DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.483e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.085849

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1776 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	6679124	X_6679124_SNP [dm3] X_6785091_SNP [dm6]	A	G	9.355e^-7	0.42	INTRON C3G	TF binding site mE1_TFBS_HSA
3L	10396532	3L_10396532_SNP [dm3] 3L_10403432_SNP [dm6]	C	A	1.527e^-6	0.42	INTERGENIC
3L	21968126	3L_21968126_SNP [dm3] 3L_21975026_SNP [dm6]	T	A	2.019e^-6	0.42	INTRON CG7470
3L	21968129	3L_21968129_SNP [dm3] 3L_21975029_SNP [dm6]	T	C	2.019e^-6	0.42	INTRON CG7470
3L	21968130	3L_21968130_SNP [dm3] 3L_21975030_SNP [dm6]	G	A	2.019e^-6	0.42	INTRON CG7470
X	2888398	X_2888398_SNP [dm3] X_2994365_SNP [dm6]	T	A	2.087e^-6	0.42	INTRON kirre	TF binding site mE1_TFBS_HSA
X	2888399	X_2888399_SNP [dm3] X_2994366_SNP [dm6]	C	G	2.087e^-6	0.42	INTRON kirre	TF binding site mE1_TFBS_HSA
X	2888401	X_2888401_DEL [dm3] X_2994368_DEL [dm6]	AA	A	2.087e^-6	0.42	INTRON kirre	TF binding site mE1_TFBS_HSA
3L	19387043	3L_19387043_SNP [dm3] 3L_19393943_SNP [dm6]	G	T	2.309e^-6	0.42	INTRON CG32206
3L	19387044	3L_19387044_SNP [dm3] 3L_19393944_SNP [dm6]	A	T	2.309e^-6	0.42	INTRON CG32206
2L	7392737	2L_7392737_SNP [dm3] 2L_7392737_SNP [dm6]	T	G	3.237e^-6	0.442	INTRON CG5160
3R	10602855	3R_10602855_SNP [dm3] 3R_14777133_SNP [dm6]	T	C	4.142e^-6	0.442	INTRON jvl	TF binding site BDTNP1_TFBS_twi
2L	3985015	2L_3985015_SNP [dm3] 2L_3985015_SNP [dm6]	C	A	4.820e^-6	0.442	INTRON fred
3L	19386731	3L_19386731_SNP [dm3] 3L_19393631_SNP [dm6]	C	T	4.983e^-6	0.442	INTRON CG32206
3L	19387125	3L_19387125_SNP [dm3] 3L_19394025_SNP [dm6]	A	C	5.111e^-6	0.442	INTRON CG32206
2L	7392474	2L_7392474_SNP [dm3] 2L_7392474_SNP [dm6]	C	T	5.789e^-6	0.442	INTRON CG5160
2L	7392484	2L_7392484_SNP [dm3] 2L_7392484_SNP [dm6]	A	G	5.789e^-6	0.442	INTRON CG5160
2L	7392514	2L_7392514_INS [dm3] 2L_7392514_INS [dm6]	T	TA	5.789e^-6	0.442	INTRON CG5160
2L	7392518	2L_7392518_SNP [dm3] 2L_7392518_SNP [dm6]	C	A	5.789e^-6	0.442	INTRON CG5160
2L	7392551	2L_7392551_SNP [dm3] 2L_7392551_SNP [dm6]	T	A	5.789e^-6	0.442	INTRON CG5160
3L	11148225	3L_11148225_SNP [dm3] 3L_11155125_SNP [dm6]	G	A	5.814e^-6	0.442	INTRON CG32082
X	2888388	X_2888388_SNP [dm3] X_2994355_SNP [dm6]	T	C	5.939e^-6	0.442	INTRON kirre	TF binding site mE1_TFBS_HSA
X	2888410	X_2888410_SNP [dm3] X_2994377_SNP [dm6]	G	A	5.939e^-6	0.442	INTRON kirre	TF binding site mE1_TFBS_HSA
3L	19386848	3L_19386848_SNP [dm3] 3L_19393748_SNP [dm6]	G	T	6.135e^-6	0.442	INTRON CG32206
3L	10396510	3L_10396510_SNP [dm3] 3L_10403410_SNP [dm6]	T	A	6.174e^-6	0.442	INTERGENIC
3L	19386664	3L_19386664_SNP [dm3] 3L_19393564_SNP [dm6]	T	A	6.490e^-6	0.442	INTRON CG32206
3R	11540013	3R_11540013_SNP [dm3] 3R_15714291_SNP [dm6]	T	C	6.567e^-6	0.442	INTERGENIC
2R	16984914	2R_16984914_SNP [dm3] 2R_21097409_SNP [dm6]	G	T	7.480e^-6	0.485	UPSTREAM CG34396 & 1 other INTRON CG34396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7392540	2L_7392540_SNP [dm3] 2L_7392540_SNP [dm6]	G	C	8.029e^-6	0.503	INTRON CG5160
3R	26982703	3R_26982703_SNP [dm3] 3R_31156981_SNP [dm6]	G	T	8.734e^-6	0.512	INTRON Gycbeta100B
X	2888414	X_2888414_SNP [dm3] X_2994381_SNP [dm6]	T	G	9.208e^-6	0.512	INTRON kirre	TF binding site mE1_TFBS_HSA
3L	9309606	3L_9309606_SNP [dm3] 3L_9316506_SNP [dm6]	C	G	9.255e^-6	0.512	INTERGENIC
3L	4043937	3L_4043937_SNP [dm3] 3L_4043937_SNP [dm6]	C	G	9.298e^-6	0.512	INTERGENIC
2R	8943727	2R_8943727_SNP [dm3] 2R_13056222_SNP [dm6]	G	T	9.652e^-6	0.516	UTR_3_PRIME Drl-2 DOWNSTREAM Drl-2
3L	11148240	3L_11148240_SNP [dm3] 3L_11155140_SNP [dm6]	G	A	9.974e^-6	0.516	INTRON CG32082
3L	13291564	3L_13291564_SNP [dm3] 3L_13298464_SNP [dm6]	A	G	1.076e^-5	0.516	UPSTREAM CR45255 DOWNSTREAM CR45253 & 1 other EXON CR45254	TF binding site BDTNP1_TFBS_prd
3R	11539917	3R_11539917_DEL [dm3] 3R_15714195_DEL [dm6]	GCGTTGAGTTG...	G	1.084e^-5	0.516	INTERGENIC
X	3360290	X_3360290_SNP [dm3] X_3466257_SNP [dm6]	T	G	1.090e^-5	0.516	INTRON CR44999 & 1 other
3R	26468217	3R_26468217_SNP [dm3] 3R_30642495_SNP [dm6]	T	C	1.107e^-5	0.516	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8437633	3L_8437633_SNP [dm3] 3L_8444533_SNP [dm6]	G	A	1.153e^-5	0.524	SYNONYMOUS_CODING CG6983	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	21850004	X_21850004_SNP [dm3] X_22448168_SNP [dm6]	G	A	1.308e^-5	0.58	DOWNSTREAM CG14621 INTRON CG14615
2R	18968923	2R_18968923_SNP [dm3] 2R_23081400_SNP [dm6]	G	A	1.367e^-5	0.591	SYNONYMOUS_CODING Gr59a UPSTREAM Gr59b	regulatory region REDfly_CRMs
3L	2652798	3L_2652798_SNP [dm3] 3L_2652798_SNP [dm6]	A	C	1.496e^-5	0.632	NON_SYNONYMOUS_CODING Snup UTR_5_PRIME CG42304 UPSTREAM Aats-pro & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	16558473	2L_16558473_SNP [dm3] 2L_16558473_SNP [dm6]	G	T	1.560e^-5	0.644	SYNONYMOUS_CODING CG42389	TF binding site mE1_TFBS_cad
3L	11125617	3L_11125617_SNP [dm3] 3L_11132517_SNP [dm6]	A	G	1.632e^-5	0.646	UPSTREAM CG32074 INTRON CG42575
X	2888418	X_2888418_SNP [dm3] X_2994385_SNP [dm6]	A	G	1.636e^-5	0.646	INTRON kirre	TF binding site mE1_TFBS_HSA
3L	19386849	3L_19386849_SNP [dm3] 3L_19393749_SNP [dm6]	T	C	1.702e^-5	0.651	INTRON CG32206
2R	12086879	2R_12086879_SNP [dm3] 2R_16199374_SNP [dm6]	T	A	1.720e^-5	0.651	UTR_3_PRIME CG42837 & 1 other DOWNSTREAM shark
X	21850002	X_21850002_SNP [dm3] X_22448166_SNP [dm6]	G	T	1.857e^-5	0.679	DOWNSTREAM CG14621 INTRON CG14615
2R	13994071	2R_13994071_SNP [dm3] 2R_18106566_SNP [dm6]	G	A	1.870e^-5	0.679	INTRON CG5756
3L	9608146	3L_9608146_SNP [dm3] 3L_9615046_SNP [dm6]	T	C	1.953e^-5	0.696	UPSTREAM LanB2 INTRON LanB2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12129782	3L_12129782_SNP [dm3] 3L_12136682_SNP [dm6]	C	T	2.056e^-5	0.718	UTR_5_PRIME CG5645 UPSTREAM Atg12 DOWNSTREAM l_3_neo18	TF binding site mE1_TFBS_cad
2L	7392808	2L_7392808_SNP [dm3] 2L_7392808_SNP [dm6]	A	G	2.205e^-5	0.756	INTRON CG5160
X	6679129	X_6679129_SNP [dm3] X_6785096_SNP [dm6]	T	A	2.346e^-5	0.762	INTRON C3G	TF binding site mE1_TFBS_HSA
X	3360286	X_3360286_SNP [dm3] X_3466253_SNP [dm6]	C	A	2.363e^-5	0.762	INTRON CR44999 & 1 other
2L	4012537	2L_4012537_SNP [dm3] 2L_4012537_SNP [dm6]	C	T	2.414e^-5	0.762	INTERGENIC
2R	19491538	2R_19491538_SNP [dm3] 2R_23604015_SNP [dm6]	A	G	2.475e^-5	0.762	SYNONYMOUS_CODING CG17664 DOWNSTREAM CG5398
2R	18969255	2R_18969255_SNP [dm3] 2R_23081732_SNP [dm6]	A	G	2.475e^-5	0.762	UPSTREAM Gr59b DOWNSTREAM Gr59a INTERGENIC	regulatory region REDfly_CRMs
2R	18969375	2R_18969375_SNP [dm3] 2R_23081852_SNP [dm6]	A	T	2.475e^-5	0.762	UPSTREAM Gr59b DOWNSTREAM Gr59a INTERGENIC	regulatory region REDfly_CRMs
2R	6801181	2R_6801181_SNP [dm3] 2R_10913676_SNP [dm6]	C	A	2.583e^-5	0.782	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	13551908	3L_13551908_SNP [dm3] 3L_13558808_SNP [dm6]	C	G	2.730e^-5	0.813	DOWNSTREAM CR45178 INTRON bru-3
3R	23410655	3R_23410655_SNP [dm3] 3R_27584933_SNP [dm6]	G	A	2.837e^-5	0.831	NON_SYNONYMOUS_CODING raps	TF binding site mE1_TFBS_chinmo
3L	21968136	3L_21968136_DEL [dm3] 3L_21975036_DEL [dm6]	AA	A	2.916e^-5	0.834	INTRON CG7470
2L	16431241	2L_16431241_SNP [dm3] 2L_16431241_SNP [dm6]	A	G	2.967e^-5	0.834	INTRON CG5888
2R	18969261	2R_18969261_SNP [dm3] 2R_23081738_SNP [dm6]	A	C	3.114e^-5	0.834	UPSTREAM Gr59b DOWNSTREAM Gr59a INTERGENIC	regulatory region REDfly_CRMs
2R	18969392	2R_18969392_SNP [dm3] 2R_23081869_SNP [dm6]	G	C	3.114e^-5	0.834	UPSTREAM Gr59b DOWNSTREAM Gr59a INTERGENIC	regulatory region REDfly_CRMs
3L	9608244	3L_9608244_SNP [dm3] 3L_9615144_SNP [dm6]	G	A	3.433e^-5	0.834	UPSTREAM LanB2 INTRON LanB2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	1739324	2R_1739324_SNP [dm3] 2R_5851819_SNP [dm6]	T	C	3.448e^-5	0.834	INTRON dpr12
2L	2068780	2L_2068780_SNP [dm3] 2L_2068780_SNP [dm6]	A	G	3.533e^-5	0.834	INTRON dpr3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15156377	3R_15156377_SNP [dm3] 3R_19330655_SNP [dm6]	T	C	3.536e^-5	0.834	EXON CR43258	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2988863	3L_2988863_SNP [dm3] 3L_2988863_SNP [dm6]	G	A	3.536e^-5	0.834	INTERGENIC
3R	24579641	3R_24579641_SNP [dm3] 3R_28753919_SNP [dm6]	C	A	3.615e^-5	0.834	INTERGENIC	TF binding site mE1_TFBS_inv
3L	3106250	3L_3106250_SNP [dm3] 3L_3106250_SNP [dm6]	C	A	3.616e^-5	0.834	INTRON Cht7
2R	16984982	2R_16984982_SNP [dm3] 2R_21097477_SNP [dm6]	T	G	3.630e^-5	0.834	UPSTREAM CG34396 & 1 other INTRON CG34396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	7392488	2L_7392488_SNP [dm3] 2L_7392488_SNP [dm6]	A	T	3.652e^-5	0.834	INTRON CG5160
2L	7392503	2L_7392503_SNP [dm3] 2L_7392503_SNP [dm6]	A	G	3.652e^-5	0.834	INTRON CG5160
2L	7392506	2L_7392506_SNP [dm3] 2L_7392506_SNP [dm6]	T	A	3.652e^-5	0.834	INTRON CG5160
2L	7392557	2L_7392557_SNP [dm3] 2L_7392557_SNP [dm6]	C	T	3.652e^-5	0.834	INTRON CG5160
3L	1842570	3L_1842570_SNP [dm3] 3L_1842570_SNP [dm6]	G	C	3.675e^-5	0.834	UPSTREAM Cpr62Bc INTERGENIC
X	12923370	X_12923370_SNP [dm3] X_13029337_SNP [dm6]	T	A	3.735e^-5	0.834	INTRON rad
X	12923371	X_12923371_SNP [dm3] X_13029338_SNP [dm6]	A	G	3.735e^-5	0.834	INTRON rad
3L	12131257	3L_12131257_SNP [dm3] 3L_12138157_SNP [dm6]	G	A	3.763e^-5	0.834	SYNONYMOUS_CODING l_3_neo18 UPSTREAM RhoGAP68F DOWNSTREAM Atg12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
2R	11156104	2R_11156104_SNP [dm3] 2R_15268599_SNP [dm6]	T	G	3.858e^-5	0.841	INTRON Trpm
X	12388116	X_12388116_SNP [dm3] X_12494083_SNP [dm6]	G	A	3.897e^-5	0.841	DOWNSTREAM Mks1 INTERGENIC
3L	10396489	3L_10396489_INS [dm3] 3L_10403389_INS [dm6]	T	TTA	3.990e^-5	0.841	INTERGENIC
2R	7810946	2R_7810946_SNP [dm3] 2R_11923441_SNP [dm6]	T	C	4.049e^-5	0.841	INTERGENIC
X	6678972	X_6678972_SNP [dm3] X_6784939_SNP [dm6]	C	A	4.104e^-5	0.841	INTRON C3G
3R	26982549	3R_26982549_SNP [dm3] 3R_31156827_SNP [dm6]	A	G	4.171e^-5	0.841	INTRON Gycbeta100B
2R	11900270	2R_11900270_SNP [dm3] 2R_16012765_SNP [dm6]	A	G	4.182e^-5	0.841	SYNONYMOUS_CODING CG8389	TF binding site BDTNP1_TFBS_sna
3L	4511269	3L_4511269_SNP [dm3] 3L_4511269_SNP [dm6]	A	G	4.294e^-5	0.841	SYNONYMOUS_CODING Tie	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	3510493	3L_3510493_SNP [dm3] 3L_3510493_SNP [dm6]	T	G	4.393e^-5	0.841	UTR_3_PRIME CG42324 DOWNSTREAM ImpE2
3R	26982735	3R_26982735_SNP [dm3] 3R_31157013_SNP [dm6]	C	A	4.437e^-5	0.841	INTRON Gycbeta100B
3L	752494	3L_752494_SNP [dm3] 3L_752494_SNP [dm6]	C	G	4.542e^-5	0.841	UTR_3_PRIME emc INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11170008	2L_11170008_SNP [dm3] 2L_11170008_SNP [dm6]	C	T	4.552e^-5	0.841	INTRON Ca-beta
X	12387044	X_12387044_SNP [dm3] X_12493011_SNP [dm6]	G	T	4.581e^-5	0.841	DOWNSTREAM Lsp1alpha INTERGENIC
X	12387064	X_12387064_SNP [dm3] X_12493031_SNP [dm6]	G	T	4.581e^-5	0.841	DOWNSTREAM Lsp1alpha INTERGENIC
X	12387065	X_12387065_SNP [dm3] X_12493032_SNP [dm6]	C	T	4.581e^-5	0.841	DOWNSTREAM Lsp1alpha INTERGENIC
X	12387069	X_12387069_SNP [dm3] X_12493036_SNP [dm6]	T	G	4.581e^-5	0.841	DOWNSTREAM Lsp1alpha INTERGENIC
X	12387073	X_12387073_SNP [dm3] X_12493040_SNP [dm6]	A	T	4.581e^-5	0.841	DOWNSTREAM Lsp1alpha INTERGENIC
3L	9312479	3L_9312479_SNP [dm3] 3L_9319379_SNP [dm6]	T	G	4.674e^-5	0.849	INTERGENIC
X	3360285	X_3360285_SNP [dm3] X_3466252_SNP [dm6]	T	A	4.730e^-5	0.85	INTRON CR44999 & 1 other
2L	2406143	2L_2406143_SNP [dm3] 2L_2406143_SNP [dm6]	T	C	4.796e^-5	0.85	INTRON VGlut	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	16899188	2R_16899188_SNP [dm3] 2R_21011683_SNP [dm6]	G	T	4.820e^-5	0.85	UPSTREAM CG9346 INTRON grau	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	7391897	2L_7391897_SNP [dm3] 2L_7391897_SNP [dm6]	G	A	5.006e^-5	0.861	SYNONYMOUS_CODING CG5160 DOWNSTREAM gudu
2L	2406132	2L_2406132_SNP [dm3] 2L_2406132_SNP [dm6]	G	C	5.023e^-5	0.861	INTRON VGlut	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	9948646	3R_9948646_SNP [dm3] 3R_14122924_SNP [dm6]	T	A	5.110e^-5	0.861	UPSTREAM Abi INTRON twf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	22361231	2L_22361231_SNP [dm3] 2L_22361231_SNP [dm6]	C	T	5.165e^-5	0.861	INTRON CG17018	transposable element FlyBase
3L	11116792	3L_11116792_SNP [dm3] 3L_11123692_SNP [dm6]	C	A	5.169e^-5	0.861	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11116873	3L_11116873_SNP [dm3] 3L_11123773_SNP [dm6]	A	G	5.169e^-5	0.861	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8976358	2R_8976358_SNP [dm3] 2R_13088853_SNP [dm6]	T	G	5.351e^-5	0.87	INTERGENIC
2L	11409863	2L_11409863_SNP [dm3] 2L_11409863_SNP [dm6]	C	G	5.360e^-5	0.87	INTERGENIC	regulatory region REDfly_CRMs
3L	2616154	3L_2616154_SNP [dm3] 3L_2616154_SNP [dm6]	C	T	5.369e^-5	0.87	INTRON Pxn	TF binding site mE1_TFBS_chinmo
3L	3510950	3L_3510950_SNP [dm3] 3L_3510950_SNP [dm6]	A	T	5.451e^-5	0.87	DOWNSTREAM ImpE2 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	19470378	3R_19470378_SNP [dm3] 3R_23644656_SNP [dm6]	G	A	5.470e^-5	0.87	INTRON CG31145
2L	4010471	2L_4010471_SNP [dm3] 2L_4010471_SNP [dm6]	C	T	5.506e^-5	0.87	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	2964349	2L_2964349_SNP [dm3] 2L_2964349_SNP [dm6]	C	T	5.581e^-5	0.874	UTR_3_PRIME Rbp9	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	25305787	3R_25305787_INS [dm3] 3R_29480065_INS [dm6]	T	TT	5.642e^-5	0.876	INTRON Ptp99A
2L	7392521	2L_7392521_SNP [dm3] 2L_7392521_SNP [dm6]	A	C	6.042e^-5	0.894	INTRON CG5160
2L	7392534	2L_7392534_INS [dm3] 2L_7392534_INS [dm6]	T	AC	6.042e^-5	0.894	INTRON CG5160
2L	7392538	2L_7392538_SNP [dm3] 2L_7392538_SNP [dm6]	T	A	6.042e^-5	0.894	INTRON CG5160
2L	7392542	2L_7392542_SNP [dm3] 2L_7392542_SNP [dm6]	G	C	6.042e^-5	0.894	INTRON CG5160
3R	13650957	3R_13650957_SNP [dm3] 3R_17825235_SNP [dm6]	A	T	6.056e^-5	0.894	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	13650958	3R_13650958_SNP [dm3] 3R_17825236_SNP [dm6]	A	C	6.056e^-5	0.894	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	11475590	3R_11475590_SNP [dm3] 3R_15649868_SNP [dm6]	A	G	6.242e^-5	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12388124	X_12388124_SNP [dm3] X_12494091_SNP [dm6]	C	G	6.255e^-5	0.902	DOWNSTREAM Mks1 INTERGENIC
X	12388126	X_12388126_SNP [dm3] X_12494093_SNP [dm6]	A	T	6.255e^-5	0.902	DOWNSTREAM Mks1 INTERGENIC
X	6679028	X_6679028_SNP [dm3] X_6784995_SNP [dm6]	G	A	6.326e^-5	0.905	INTRON C3G
X	6517399	X_6517399_SNP [dm3] X_6623366_SNP [dm6]	A	C	6.529e^-5	0.918	INTRON pigs	TF binding site mE1_TFBS_HSA
3L	3510268	3L_3510268_SNP [dm3] 3L_3510268_SNP [dm6]	A	C	6.536e^-5	0.918	UTR_3_PRIME CG42324 DOWNSTREAM ImpE2
3R	20956547	3R_20956547_SNP [dm3] 3R_25130825_SNP [dm6]	G	C	6.628e^-5	0.918	UPSTREAM Bili INTRON Clbn
3R	13869643	3R_13869643_SNP [dm3] 3R_18043921_SNP [dm6]	A	C	6.676e^-5	0.918	INTERGENIC
2R	11158116	2R_11158116_SNP [dm3] 2R_15270611_SNP [dm6]	T	C	6.772e^-5	0.918	INTRON Trpm
3R	22750306	3R_22750306_SNP [dm3] 3R_26924584_SNP [dm6]	A	G	6.780e^-5	0.918	INTRON sda
3L	1842503	3L_1842503_SNP [dm3] 3L_1842503_SNP [dm6]	T	C	6.812e^-5	0.918	UPSTREAM Cpr62Bc INTERGENIC
3L	11453316	3L_11453316_INS [dm3] 3L_11460216_INS [dm6]	A	AA	6.930e^-5	0.918	DOWNSTREAM CG7551 INTERGENIC	TF binding site mE1_TFBS_inv
X	6679203	X_6679203_SNP [dm3] X_6785170_SNP [dm6]	A	G	6.962e^-5	0.918	INTRON C3G	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	20006383	2R_20006383_SNP [dm3] 2R_24118860_SNP [dm6]	T	A	6.972e^-5	0.918	INTRON CG3257	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	17774614	3R_17774614_SNP [dm3] 3R_21948892_SNP [dm6]	G	A	6.998e^-5	0.918	UPSTREAM Eip93F INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	10602629	3R_10602629_SNP [dm3] 3R_14776907_SNP [dm6]	G	A	7.080e^-5	0.918	INTRON jvl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18968983	2R_18968983_SNP [dm3] 2R_23081460_SNP [dm6]	G	C	7.172e^-5	0.918	NON_SYNONYMOUS_CODING Gr59a UPSTREAM Gr59b	regulatory region REDfly_CRMs
X	12385568	X_12385568_SNP [dm3] X_12491535_SNP [dm6]	C	T	7.179e^-5	0.918	SYNONYMOUS_CODING Lsp1alpha	TF binding site mE1_TFBS_sens
3L	1842777	3L_1842777_SNP [dm3] 3L_1842777_SNP [dm6]	G	A	7.243e^-5	0.918	UPSTREAM Cpr62Bc INTERGENIC
X	12387047	X_12387047_SNP [dm3] X_12493014_SNP [dm6]	A	C	7.245e^-5	0.918	DOWNSTREAM Lsp1alpha INTERGENIC
2R	6267142	2R_6267142_SNP [dm3] 2R_10379637_SNP [dm6]	T	C	7.279e^-5	0.918	SYNONYMOUS_CODING Ir47a INTRON CG42732
3L	11116788	3L_11116788_SNP [dm3] 3L_11123688_SNP [dm6]	G	C	7.457e^-5	0.918	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	22360042	2L_22360042_SNP [dm3] 2L_22360042_SNP [dm6]	A	C	7.581e^-5	0.918	INTRON CG17018	transposable element FlyBase
3L	16457923	3L_16457923_SNP [dm3] 3L_16464823_SNP [dm6]	A	T	7.636e^-5	0.918	INTRON CG33158
3L	11414867	3L_11414867_SNP [dm3] 3L_11421767_SNP [dm6]	A	C	7.689e^-5	0.918	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8320488	3L_8320488_SNP [dm3] 3L_8327388_SNP [dm6]	A	T	7.739e^-5	0.918	UTR_3_PRIME CG34461 DOWNSTREAM CG34461	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	7392804	2L_7392804_SNP [dm3] 2L_7392804_SNP [dm6]	T	A	7.841e^-5	0.918	INTRON CG5160
3R	24519271	3R_24519271_SNP [dm3] 3R_28693549_SNP [dm6]	T	C	7.903e^-5	0.918	SYNONYMOUS_CODING CG9990	TF binding site mE1_TFBS_cad
X	12388723	X_12388723_SNP [dm3] X_12494690_SNP [dm6]	A	G	7.909e^-5	0.918	SYNONYMOUS_CODING Mks1
2R	6334835	2R_6334835_SNP [dm3] 2R_10447330_SNP [dm6]	A	G	7.932e^-5	0.918	INTRON Galphao
3R	13764997	3R_13764997_SNP [dm3] 3R_17939275_SNP [dm6]	A	C	7.990e^-5	0.918	INTRON cpo	TF binding site mE1_TFBS_sens
2R	11900213	2R_11900213_SNP [dm3] 2R_16012708_SNP [dm6]	A	C	7.993e^-5	0.918	SYNONYMOUS_CODING CG8389	TF binding site BDTNP1_TFBS_sna
3L	12147978	3L_12147978_SNP [dm3] 3L_12154878_SNP [dm6]	A	C	8.020e^-5	0.918	SYNONYMOUS_CODING Nrx-IV	TF binding site mE1_TFBS_sens
2L	5259248	2L_5259248_SNP [dm3] 2L_5259248_SNP [dm6]	G	A	8.063e^-5	0.918	INTRON tkv EXON CR44744	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11900267	2R_11900267_SNP [dm3] 2R_16012762_SNP [dm6]	G	C	8.131e^-5	0.918	SYNONYMOUS_CODING CG8389	TF binding site BDTNP1_TFBS_sna
2R	10020304	2R_10020304_SNP [dm3] 2R_14132799_SNP [dm6]	A	C	8.220e^-5	0.918	INTRON Prosap	TF binding site mE1_TFBS_inv
3L	19386622	3L_19386622_SNP [dm3] 3L_19393522_SNP [dm6]	C	A	8.233e^-5	0.918	INTRON CG32206
3R	19469820	3R_19469820_SNP [dm3] 3R_23644098_SNP [dm6]	T	G	8.382e^-5	0.918	INTRON CG31145
2L	16558500	2L_16558500_SNP [dm3] 2L_16558500_SNP [dm6]	A	C	8.442e^-5	0.918	SYNONYMOUS_CODING CG42389	TF binding site mE1_TFBS_cad
3L	10367567	3L_10367567_SNP [dm3] 3L_10374467_SNP [dm6]	C	A	8.526e^-5	0.918	INTERGENIC
X	14610624	X_14610624_SNP [dm3] X_14716591_SNP [dm6]	T	G	8.573e^-5	0.918	INTRON NetB
X	16931180	X_16931180_SNP [dm3] X_17037147_SNP [dm6]	A	G	8.588e^-5	0.918	INTRON CG45002
3R	4691028	3R_4691028_SNP [dm3] 3R_8865306_SNP [dm6]	G	C	8.613e^-5	0.918	SPLICE_SITE_REGION pyd UPSTREAM pyd INTRON pyd
2L	16558413	2L_16558413_SNP [dm3] 2L_16558413_SNP [dm6]	T	A	8.615e^-5	0.918	SYNONYMOUS_CODING CG42389	TF binding site mE1_TFBS_cad
2L	12330301	2L_12330301_SNP [dm3] 2L_12330301_SNP [dm6]	T	A	8.621e^-5	0.918	INTERGENIC
3L	16062500	3L_16062500_SNP [dm3] 3L_16069400_SNP [dm6]	A	T	8.800e^-5	0.918	INTRON Mbs
3L	4511272	3L_4511272_SNP [dm3] 3L_4511272_SNP [dm6]	G	A	8.804e^-5	0.918	SYNONYMOUS_CODING Tie	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	11158104	2R_11158104_SNP [dm3] 2R_15270599_SNP [dm6]	A	T	8.896e^-5	0.918	INTRON Trpm
2R	11158128	2R_11158128_SNP [dm3] 2R_15270623_SNP [dm6]	A	C	8.896e^-5	0.918	SPLICE_SITE_REGION Trpm INTRON Trpm
3R	7953378	3R_7953378_SNP [dm3] 3R_12127656_SNP [dm6]	G	T	9.172e^-5	0.918	INTRON CG4702	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	12387048	X_12387048_SNP [dm3] X_12493015_SNP [dm6]	A	T	9.462e^-5	0.918	DOWNSTREAM Lsp1alpha INTERGENIC
2L	8010395	2L_8010395_SNP [dm3] 2L_8010395_SNP [dm6]	A	C	9.601e^-5	0.918	UPSTREAM CG12560 INTRON CG34010	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	3528312	X_3528312_SNP [dm3] X_3634279_SNP [dm6]	C	T	9.802e^-5	0.918	INTRON AstA-R1	TF binding site BDTNP1_TFBS_twi
3R	23389212	3R_23389212_SNP [dm3] 3R_27563490_SNP [dm6]	T	C	9.835e^-5	0.918	UTR_3_PRIME wdb
2R	18969278	2R_18969278_SNP [dm3] 2R_23081755_SNP [dm6]	C	T	9.849e^-5	0.918	UPSTREAM Gr59b DOWNSTREAM Gr59a INTERGENIC	regulatory region REDfly_CRMs
2R	18969374	2R_18969374_SNP [dm3] 2R_23081851_SNP [dm6]	A	G	9.849e^-5	0.918	UPSTREAM Gr59b DOWNSTREAM Gr59a INTERGENIC	regulatory region REDfly_CRMs
2R	18969379	2R_18969379_SNP [dm3] 2R_23081856_SNP [dm6]	C	G	9.849e^-5	0.918	UPSTREAM Gr59b DOWNSTREAM Gr59a INTERGENIC	regulatory region REDfly_CRMs
2R	18969400	2R_18969400_SNP [dm3] 2R_23081877_SNP [dm6]	A	G	9.849e^-5	0.918	UPSTREAM Gr59b DOWNSTREAM Gr59a INTERGENIC	regulatory region REDfly_CRMs
X	14644946	X_14644946_SNP [dm3] X_14750913_SNP [dm6]	C	T	9.938e^-5	0.918	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	11453043	3L_11453043_DEL [dm3] 3L_11459943_DEL [dm6]	ACA	A	1.013e^-4	0.918	DOWNSTREAM CG7551 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	2888358	X_2888358_SNP [dm3] X_2994325_SNP [dm6]	C	G	1.020e^-4	0.918	INTRON kirre	TF binding site mE1_TFBS_HSA
3R	11539909	3R_11539909_SNP [dm3] 3R_15714187_SNP [dm6]	G	T	1.032e^-4	0.918	INTERGENIC
X	20790297	X_20790297_SNP [dm3] X_20919270_SNP [dm6]	A	T	1.041e^-4	0.918	INTRON shakB
X	3663897	X_3663897_INS [dm3] X_3769864_INS [dm6]	T	TTT	1.042e^-4	0.918	INTRON tlk	TF binding site BDTNP1_TFBS_dl
3L	13552215	3L_13552215_SNP [dm3] 3L_13559115_SNP [dm6]	G	C	1.046e^-4	0.918	INTRON bru-3
3R	13855034	3R_13855034_SNP [dm3] 3R_18029312_SNP [dm6]	T	C	1.052e^-4	0.918	INTERGENIC
3L	768328	3L_768328_DEL [dm3] 3L_768328_DEL [dm6]	TT	T	1.054e^-4	0.918	INTERGENIC
3R	24954939	3R_24954939_SNP [dm3] 3R_29129217_SNP [dm6]	T	A	1.058e^-4	0.918	SYNONYMOUS_CODING dgt6 DOWNSTREAM CG11880	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	11114754	3L_11114754_SNP [dm3] 3L_11121654_SNP [dm6]	C	T	1.062e^-4	0.918	SYNONYMOUS_CODING mRpL2 UPSTREAM fd68A DOWNSTREAM Ufd1-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3837446	2L_3837446_SNP [dm3] 2L_3837446_SNP [dm6]	C	G	1.064e^-4	0.918	SYNONYMOUS_CODING slp2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	18476228	3R_18476228_DEL [dm3] 3R_22650506_DEL [dm6]	TT	T	1.068e^-4	0.918	INTRON CG45058
X	3659626	X_3659626_SNP [dm3] X_3765593_SNP [dm6]	C	A	1.084e^-4	0.918	INTRON tlk
2R	10713912	2R_10713912_SNP [dm3] 2R_14826407_SNP [dm6]	C	T	1.088e^-4	0.918	INTERGENIC
X	3663919	X_3663919_INS [dm3] X_3769886_INS [dm6]	A	AA	1.088e^-4	0.918	INTRON tlk	TF binding site BDTNP1_TFBS_dl
X	2713719	X_2713719_SNP [dm3] X_2819686_SNP [dm6]	G	A	1.091e^-4	0.918	INTRON kirre
2L	7391721	2L_7391721_SNP [dm3] 2L_7391721_SNP [dm6]	T	C	1.094e^-4	0.918	SYNONYMOUS_CODING CG5160 DOWNSTREAM gudu
3R	13793118	3R_13793118_SNP [dm3] 3R_17967396_SNP [dm6]	C	T	1.110e^-4	0.918	SYNONYMOUS_CODING cpo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14705040	2L_14705040_SNP [dm3] 2L_14705040_SNP [dm6]	A	G	1.110e^-4	0.918	INTERGENIC
3R	25287637	3R_25287637_SNP [dm3] 3R_29461915_SNP [dm6]	G	T	1.113e^-4	0.918	UTR_5_PRIME Ptp99A INTRON Ptp99A	TF binding site BDTNP1_TFBS_twi
3L	3793037	3L_3793037_SNP [dm3] 3L_3793037_SNP [dm6]	T	A	1.132e^-4	0.918	INTRON CG32264
3L	1447144	3L_1447144_SNP [dm3] 3L_1447144_SNP [dm6]	C	T	1.132e^-4	0.918	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2694703	3L_2694703_SNP [dm3] 3L_2694703_SNP [dm6]	G	C	1.146e^-4	0.918	INTRON Fife
3L	386757	3L_386757_DEL [dm3] 3L_386757_DEL [dm6]	AGG	A	1.149e^-4	0.918	INTRON trh
2L	8769220	2L_8769220_SNP [dm3] 2L_8769220_SNP [dm6]	T	A	1.152e^-4	0.918	SYNONYMOUS_CODING CG9465 UPSTREAM CG9463
3L	19037206	3L_19037206_SNP [dm3] 3L_19044106_SNP [dm6]	A	C	1.164e^-4	0.918	INTRON nkd	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	7629835	3R_7629835_SNP [dm3] 3R_11804113_SNP [dm6]	G	C	1.172e^-4	0.918	START_GAINED ClC-a UTR_5_PRIME ClC-a INTRON ClC-a
X	12923256	X_12923256_DEL [dm3] X_13029223_DEL [dm6]	ATGCCT	CAAA	1.174e^-4	0.918	INTRON rad
2R	18968372	2R_18968372_SNP [dm3] 2R_23080849_SNP [dm6]	A	G	1.177e^-4	0.918	NON_SYNONYMOUS_CODING Gr59a	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5865807	X_5865807_SNP [dm3] X_5971774_SNP [dm6]	A	G	1.185e^-4	0.918	INTRON Grip
X	5865853	X_5865853_SNP [dm3] X_5971820_SNP [dm6]	T	G	1.185e^-4	0.918	INTRON Grip
X	4893226	X_4893226_SNP [dm3] X_4999193_SNP [dm6]	G	T	1.191e^-4	0.918	DOWNSTREAM CG12680 INTRON CR44833	regulatory region REDfly_CRMs
X	1031500	X_1031500_SNP [dm3] X_1137467_SNP [dm6]	G	A	1.192e^-4	0.918	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19360584	2R_19360584_SNP [dm3] 2R_23473061_SNP [dm6]	T	A	1.193e^-4	0.918	NON_SYNONYMOUS_CODING Or59c INTRON CG43795	TF binding site mE1_TFBS_chinmo
3L	22850208	3L_22850208_SNP [dm3] 3L_22857108_SNP [dm6]	T	C	1.197e^-4	0.918	INTERGENIC
2R	6274727	2R_6274727_SNP [dm3] 2R_10387222_SNP [dm6]	A	C	1.203e^-4	0.918	INTRON CG42732
2R	6274742	2R_6274742_SNP [dm3] 2R_10387237_SNP [dm6]	A	C	1.203e^-4	0.918	INTRON CG42732
2R	19690202	2R_19690202_SNP [dm3] 2R_23802679_SNP [dm6]	G	T	1.204e^-4	0.918	UTR_3_PRIME CG30177
3L	1394597	3L_1394597_SNP [dm3] 3L_1394597_SNP [dm6]	C	G	1.208e^-4	0.918	INTRON Ptp61F
3R	14754234	3R_14754234_SNP [dm3] 3R_18928512_SNP [dm6]	G	T	1.215e^-4	0.918	UTR_5_PRIME Mpc1 UPSTREAM CG42613	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14754237	3R_14754237_SNP [dm3] 3R_18928515_SNP [dm6]	T	A	1.215e^-4	0.918	UTR_5_PRIME Mpc1 UPSTREAM CG42613	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3510368	3L_3510368_SNP [dm3] 3L_3510368_SNP [dm6]	A	T	1.216e^-4	0.918	UTR_3_PRIME CG42324 DOWNSTREAM ImpE2
2L	7392517	2L_7392517_SNP [dm3] 2L_7392517_SNP [dm6]	G	T	1.220e^-4	0.918	INTRON CG5160
X	17025675	X_17025675_SNP [dm3] X_17131642_SNP [dm6]	T	A	1.221e^-4	0.918	INTRON CG5004
3L	16062647	3L_16062647_SNP [dm3] 3L_16069547_SNP [dm6]	C	T	1.228e^-4	0.918	INTRON Mbs
3L	21968433	3L_21968433_SNP [dm3] 3L_21975333_SNP [dm6]	A	G	1.233e^-4	0.918	INTRON CG7470
2L	4204471	2L_4204471_SNP [dm3] 2L_4204471_SNP [dm6]	G	T	1.238e^-4	0.918	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_sens
3L	19387540	3L_19387540_SNP [dm3] 3L_19394440_SNP [dm6]	T	C	1.245e^-4	0.918	INTRON CG32206
3L	9310322	3L_9310322_SNP [dm3] 3L_9317222_SNP [dm6]	G	A	1.246e^-4	0.918	INTERGENIC
3R	7953618	3R_7953618_SNP [dm3] 3R_12127896_SNP [dm6]	A	G	1.253e^-4	0.918	UTR_5_PRIME CG4702	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	19788814	2R_19788814_SNP [dm3] 2R_23901291_SNP [dm6]	G	A	1.262e^-4	0.918	SYNONYMOUS_CODING Lpt
3R	11547317	3R_11547317_SNP [dm3] 3R_15721595_SNP [dm6]	A	G	1.273e^-4	0.918	INTERGENIC
X	12388447	X_12388447_DEL [dm3] X_12494414_DEL [dm6]	TA	T	1.281e^-4	0.918	UTR_3_PRIME Mks1
3L	19548498	3L_19548498_SNP [dm3] 3L_19555398_SNP [dm6]	A	G	1.293e^-4	0.918	DOWNSTREAM CR44677 & 1 other INTERGENIC
3R	11648292	3R_11648292_SNP [dm3] 3R_15822570_SNP [dm6]	T	C	1.293e^-4	0.918	NON_SYNONYMOUS_CODING alpha-Man-IIb DOWNSTREAM rec	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12357069	3L_12357069_SNP [dm3] 3L_12363969_SNP [dm6]	C	A	1.303e^-4	0.918	INTERGENIC
3L	12718374	3L_12718374_SNP [dm3] 3L_12725274_SNP [dm6]	G	A	1.316e^-4	0.918	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9398025	2R_9398025_SNP [dm3] 2R_13510520_SNP [dm6]	T	C	1.317e^-4	0.918	SYNONYMOUS_CODING mip120	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	4017456	3L_4017456_SNP [dm3] 3L_4017456_SNP [dm6]	C	T	1.339e^-4	0.918	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2653346	3L_2653346_SNP [dm3] 3L_2653346_SNP [dm6]	T	A	1.357e^-4	0.918	UTR_5_PRIME CG42304 UTR_3_PRIME Snup
X	14130133	X_14130133_SNP [dm3] X_14236100_SNP [dm6]	C	T	1.372e^-4	0.918	NON_SYNONYMOUS_CODING Fbxl4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12437785	2L_12437785_SNP [dm3] 2L_12437785_SNP [dm6]	T	C	1.374e^-4	0.918	INTRON Elf	TF binding site mE1_TFBS_cad
X	2709528	X_2709528_SNP [dm3] X_2815495_SNP [dm6]	A	C	1.384e^-4	0.918	INTRON kirre
3L	1833536	3L_1833536_SNP [dm3] 3L_1833536_SNP [dm6]	T	G	1.386e^-4	0.918	INTRON Cpr62Bb
X	12923214	X_12923214_SNP [dm3] X_13029181_SNP [dm6]	T	G	1.386e^-4	0.918	INTRON rad
X	12923222	X_12923222_SNP [dm3] X_13029189_SNP [dm6]	A	T	1.386e^-4	0.918	INTRON rad
X	12923254	X_12923254_SNP [dm3] X_13029221_SNP [dm6]	A	C	1.386e^-4	0.918	INTRON rad
X	17482406	X_17482406_SNP [dm3] X_17588373_SNP [dm6]	T	C	1.400e^-4	0.918	UPSTREAM CG12992 INTRON CG12991
3L	7628925	3L_7628925_SNP [dm3] 3L_7635825_SNP [dm6]	G	A	1.413e^-4	0.918	INTRON CG33275	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17284226	2R_17284226_SNP [dm3] 2R_21396721_SNP [dm6]	A	G	1.436e^-4	0.918	INTRON Sdc
X	3528138	X_3528138_SNP [dm3] X_3634105_SNP [dm6]	C	T	1.446e^-4	0.918	INTRON AstA-R1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21252913	3L_21252913_SNP [dm3] 3L_21259813_SNP [dm6]	A	G	1.449e^-4	0.918	INTRON Eip78C
2L	20983378	2L_20983378_SNP [dm3] 2L_20983378_SNP [dm6]	G	C	1.450e^-4	0.918	INTRON CG42238
3R	7629690	3R_7629690_SNP [dm3] 3R_11803968_SNP [dm6]	G	A	1.467e^-4	0.918	SYNONYMOUS_CODING ClC-a INTRON ClC-a
3R	7629801	3R_7629801_SNP [dm3] 3R_11804079_SNP [dm6]	G	A	1.467e^-4	0.918	START_GAINED ClC-a UTR_5_PRIME ClC-a INTRON ClC-a
3R	7629824	3R_7629824_SNP [dm3] 3R_11804102_SNP [dm6]	A	C	1.467e^-4	0.918	START_GAINED ClC-a UTR_5_PRIME ClC-a INTRON ClC-a
2R	20101503	2R_20101503_SNP [dm3] 2R_24213980_SNP [dm6]	A	G	1.469e^-4	0.918	UTR_3_PRIME CG30419
X	3360294	X_3360294_SNP [dm3] X_3466261_SNP [dm6]	A	G	1.493e^-4	0.918	INTRON CR44999 & 1 other
3R	26403559	3R_26403559_SNP [dm3] 3R_30577837_SNP [dm6]	A	G	1.505e^-4	0.918	INTRON tmod
3L	16062644	3L_16062644_SNP [dm3] 3L_16069544_SNP [dm6]	T	C	1.505e^-4	0.918	INTRON Mbs
3L	1842282	3L_1842282_SNP [dm3] 3L_1842282_SNP [dm6]	C	T	1.507e^-4	0.918	UPSTREAM Cpr62Bc INTERGENIC
X	3527647	X_3527647_DEL [dm3] X_3633614_DEL [dm6]	TGTTTCC	T	1.514e^-4	0.918	INTRON AstA-R1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	5950814	2R_5950814_SNP [dm3] 2R_10063309_SNP [dm6]	G	T	1.514e^-4	0.918	UTR_3_PRIME magu DOWNSTREAM CG2292
2R	18502496	2R_18502496_SNP [dm3] 2R_22614991_SNP [dm6]	T	A	1.522e^-4	0.918	INTRON CG33143	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	1842493	3L_1842493_SNP [dm3] 3L_1842493_SNP [dm6]	T	C	1.530e^-4	0.918	UPSTREAM Cpr62Bc INTERGENIC
X	16933827	X_16933827_DEL [dm3] X_17039794_DEL [dm6]	CC	C	1.533e^-4	0.918	INTRON CG45002
2R	20020569	2R_20020569_SNP [dm3] 2R_24133046_SNP [dm6]	T	C	1.542e^-4	0.918	UTR_5_PRIME tamo UPSTREAM Zfrp8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19418140	3L_19418140_SNP [dm3] 3L_19425040_SNP [dm6]	C	G	1.556e^-4	0.918	UPSTREAM CR32205 DOWNSTREAM CG33255 & 1 other INTERGENIC
2L	8652378	2L_8652378_SNP [dm3] 2L_8652378_SNP [dm6]	A	G	1.562e^-4	0.918	INTRON Sema-1a
3R	10602624	3R_10602624_INS [dm3] 3R_14776902_INS [dm6]	T	TTTTAAAGTATT...	1.572e^-4	0.918	INTRON jvl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15438834	2R_15438834_SNP [dm3] 2R_19551329_SNP [dm6]	C	T	1.581e^-4	0.918	UPSTREAM CG43111 INTRON sm
2R	18969036	2R_18969036_SNP [dm3] 2R_23081513_SNP [dm6]	T	A	1.582e^-4	0.918	UPSTREAM Gr59b INTRON Gr59a	regulatory region REDfly_CRMs
2R	12086806	2R_12086806_SNP [dm3] 2R_16199301_SNP [dm6]	G	T	1.583e^-4	0.918	UTR_3_PRIME CG42837 & 1 other DOWNSTREAM shark	TF binding site mE1_TFBS_cad
2R	13994105	2R_13994105_SNP [dm3] 2R_18106600_SNP [dm6]	G	A	1.586e^-4	0.918	INTRON CG5756
3L	12043942	3L_12043942_SNP [dm3] 3L_12050842_SNP [dm6]	A	G	1.589e^-4	0.918	INTRON rols
2R	10182146	2R_10182146_SNP [dm3] 2R_14294641_SNP [dm6]	T	C	1.600e^-4	0.918	UTR_3_PRIME Ih INTRON Ih
3L	7692845	3L_7692845_SNP [dm3] 3L_7699745_SNP [dm6]	A	T	1.603e^-4	0.918	SYNONYMOUS_CODING Ank2 INTRON CG32373
X	5447704	X_5447704_SNP [dm3] X_5553671_SNP [dm6]	G	A	1.620e^-4	0.918	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl
2R	20238838	2R_20238838_SNP [dm3] 2R_24351315_SNP [dm6]	C	T	1.628e^-4	0.918	DOWNSTREAM CR44811 INTRON bs & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18430962	X_18430962_SNP [dm3] X_18536929_SNP [dm6]	C	T	1.630e^-4	0.918	INTRON Bx
2L	8659278	2L_8659278_SNP [dm3] 2L_8659278_SNP [dm6]	A	C	1.631e^-4	0.918	INTRON Sema-1a
3R	16533892	3R_16533892_SNP [dm3] 3R_20708170_SNP [dm6]	C	G	1.648e^-4	0.918	INTRON Oamb
3R	14754179	3R_14754179_SNP [dm3] 3R_18928457_SNP [dm6]	G	A	1.651e^-4	0.918	UTR_5_PRIME Mpc1 UPSTREAM CG42613	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	11124419	3L_11124419_SNP [dm3] 3L_11131319_SNP [dm6]	G	T	1.660e^-4	0.918	UTR_3_PRIME nol DOWNSTREAM CG32074 INTRON CG42575
3L	11124420	3L_11124420_SNP [dm3] 3L_11131320_SNP [dm6]	G	A	1.660e^-4	0.918	UTR_3_PRIME nol DOWNSTREAM CG32074 INTRON CG42575
2R	9805048	2R_9805048_DEL [dm3] 2R_13917543_DEL [dm6]	TAATCC	T	1.673e^-4	0.918	INTRON shot
2R	9805060	2R_9805060_SNP [dm3] 2R_13917555_SNP [dm6]	G	T	1.673e^-4	0.918	INTRON shot
3R	5151102	3R_5151102_SNP [dm3] 3R_9325380_SNP [dm6]	G	A	1.676e^-4	0.918	INTRON CG8861
3R	26407463	3R_26407463_SNP [dm3] 3R_30581741_SNP [dm6]	A	T	1.684e^-4	0.918	SYNONYMOUS_CODING CG9702 DOWNSTREAM Rpt6R
X	19772426	X_19772426_DEL [dm3] X_19878393_DEL [dm6]	AGAA	A	1.685e^-4	0.918	INTRON Hers
2L	22359770	2L_22359770_SNP [dm3] 2L_22359770_SNP [dm6]	G	C	1.688e^-4	0.918	INTRON CG17018	transposable element FlyBase
3L	21261293	3L_21261293_SNP [dm3] 3L_21268193_SNP [dm6]	C	A	1.703e^-4	0.918	UPSTREAM CR45162 & 1 other DOWNSTREAM CG9389 INTRON CG9391
2R	18968636	2R_18968636_SNP [dm3] 2R_23081113_SNP [dm6]	A	G	1.704e^-4	0.918	NON_SYNONYMOUS_CODING Gr59a	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
3L	16457924	3L_16457924_SNP [dm3] 3L_16464824_SNP [dm6]	T	A	1.732e^-4	0.918	INTRON CG33158
3L	9821904	3L_9821904_SNP [dm3] 3L_9828804_SNP [dm6]	G	A	1.751e^-4	0.918	UPSTREAM CG43897 INTRON CG43897
3R	19469771	3R_19469771_SNP [dm3] 3R_23644049_SNP [dm6]	T	A	1.782e^-4	0.918	INTRON CG31145
3R	14319286	3R_14319286_SNP [dm3] 3R_18493564_SNP [dm6]	C	T	1.792e^-4	0.918	INTRON fru
3R	5305087	3R_5305087_SNP [dm3] 3R_9479365_SNP [dm6]	C	A	1.793e^-4	0.918	INTRON CG16779
X	5864492	X_5864492_SNP [dm3] X_5970459_SNP [dm6]	C	T	1.805e^-4	0.918	INTRON Grip	TF binding site BDTNP1_TFBS_da
3L	19418194	3L_19418194_SNP [dm3] 3L_19425094_SNP [dm6]	T	G	1.808e^-4	0.918	UPSTREAM CR32205 DOWNSTREAM CG33255 & 1 other INTERGENIC
3R	27355717	3R_27355717_SNP [dm3] 3R_31529995_SNP [dm6]	T	A	1.821e^-4	0.918	INTERGENIC
3L	2945452	3L_2945452_SNP [dm3] 3L_2945452_SNP [dm6]	G	A	1.822e^-4	0.918	UTR_3_PRIME Shab INTRON Shab
3R	16067185	3R_16067185_SNP [dm3] 3R_20241463_SNP [dm6]	G	A	1.842e^-4	0.918	INTRON Nlg4
X	3663679	X_3663679_SNP [dm3] X_3769646_SNP [dm6]	T	C	1.852e^-4	0.918	INTRON tlk	TF binding site BDTNP1_TFBS_dl
X	3663789	X_3663789_SNP [dm3] X_3769756_SNP [dm6]	T	A	1.852e^-4	0.918	INTRON tlk	TF binding site BDTNP1_TFBS_dl
X	3663988	X_3663988_SNP [dm3] X_3769955_SNP [dm6]	G	A	1.852e^-4	0.918	INTRON tlk	TF binding site BDTNP1_TFBS_dl
X	9908164	X_9908164_SNP [dm3] X_10014131_SNP [dm6]	A	C	1.874e^-4	0.918	UTR_3_PRIME CG2990
3L	22850011	3L_22850011_SNP [dm3] 3L_22856911_SNP [dm6]	C	G	1.875e^-4	0.918	UPSTREAM CG32459 INTERGENIC
3R	24519278	3R_24519278_SNP [dm3] 3R_28693556_SNP [dm6]	T	C	1.879e^-4	0.918	SYNONYMOUS_CODING CG9990	TF binding site mE1_TFBS_cad
3R	25204082	3R_25204082_SNP [dm3] 3R_29378360_SNP [dm6]	A	C	1.885e^-4	0.918	INTRON Ptp99A	TF binding site mE1_TFBS_HSA
3L	1598100	3L_1598100_SNP [dm3] 3L_1598100_SNP [dm6]	A	C	1.886e^-4	0.918	SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	21822643	2L_21822643_SNP [dm3] 2L_21822643_SNP [dm6]	T	C	1.889e^-4	0.918	DOWNSTREAM CR44786 INTERGENIC	TF binding site mE1_TFBS_cad
3L	16472427	3L_16472427_SNP [dm3] 3L_16479327_SNP [dm6]	C	A	1.892e^-4	0.918	INTRON CG33158 & 1 other
3L	769877	3L_769877_SNP [dm3] 3L_769877_SNP [dm6]	T	C	1.907e^-4	0.918	UPSTREAM tRNA:CR32481 DOWNSTREAM tRNA:CR32480 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	3657608	X_3657608_SNP [dm3] X_3763575_SNP [dm6]	G	A	1.909e^-4	0.918	INTRON tlk
2R	19360569	2R_19360569_SNP [dm3] 2R_23473046_SNP [dm6]	T	C	1.917e^-4	0.918	SYNONYMOUS_CODING Or59c INTRON CG43795	TF binding site mE1_TFBS_chinmo
3L	4236596	3L_4236596_SNP [dm3] 3L_4236596_SNP [dm6]	T	C	1.920e^-4	0.918	UPSTREAM ImpL2 INTERGENIC
3R	24497876	3R_24497876_SNP [dm3] 3R_28672154_SNP [dm6]	T	A	1.923e^-4	0.918	DOWNSTREAM CG9989 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3R	24497900	3R_24497900_SNP [dm3] 3R_28672178_SNP [dm6]	T	G	1.923e^-4	0.918	DOWNSTREAM CG9989 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3R	24497911	3R_24497911_SNP [dm3] 3R_28672189_SNP [dm6]	T	G	1.923e^-4	0.918	DOWNSTREAM CG9989 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	17975464	3L_17975464_SNP [dm3] 3L_17982364_SNP [dm6]	G	A	1.933e^-4	0.918	INTRON Eip75B
3L	1690640	3L_1690640_SNP [dm3] 3L_1690640_SNP [dm6]	T	A	1.938e^-4	0.918	INTRON CG7991
2R	19363037	2R_19363037_INS [dm3] 2R_23475514_INS [dm6]	A	AA	1.946e^-4	0.918	DOWNSTREAM CG13557 INTRON CG43795
2R	7901686	2R_7901686_SNP [dm3] 2R_12014181_SNP [dm6]	C	G	1.951e^-4	0.918	UPSTREAM CR44306 INTRON otk
3R	11813702	3R_11813702_SNP [dm3] 3R_15987980_SNP [dm6]	C	G	1.962e^-4	0.918	INTRON srp & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12156492	X_12156492_SNP [dm3] X_12262459_SNP [dm6]	C	T	1.978e^-4	0.918	INTRON Ten-a
2R	20256904	2R_20256904_SNP [dm3] 2R_24369381_SNP [dm6]	A	C	1.981e^-4	0.918	INTRON bs & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26396664	3R_26396664_DEL [dm3] 3R_30570942_DEL [dm6]	TGACT	T	1.998e^-4	0.918	UPSTREAM tmod INTRON tmod
3L	10520272	3L_10520272_SNP [dm3] 3L_10527172_SNP [dm6]	G	C	2.009e^-4	0.918	INTRON A2bp1
3L	10520274	3L_10520274_SNP [dm3] 3L_10527174_SNP [dm6]	A	T	2.009e^-4	0.918	INTRON A2bp1
3L	10520275	3L_10520275_SNP [dm3] 3L_10527175_SNP [dm6]	C	A	2.009e^-4	0.918	INTRON A2bp1
3L	21150370	3L_21150370_SNP [dm3] 3L_21157270_SNP [dm6]	T	C	2.014e^-4	0.918	INTRON Ac78C
3R	24510794	3R_24510794_SNP [dm3] 3R_28685072_SNP [dm6]	A	T	2.016e^-4	0.918	INTRON CG9990	TF binding site mE1_TFBS_cnc
3R	13651042	3R_13651042_SNP [dm3] 3R_17825320_SNP [dm6]	A	C	2.023e^-4	0.918	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	3543998	2L_3543998_SNP [dm3] 2L_3543998_SNP [dm6]	G	T	2.026e^-4	0.918	INTRON drm
3R	27247026	3R_27247026_SNP [dm3] 3R_31421304_SNP [dm6]	C	T	2.027e^-4	0.918	INTRON Gprk2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25601792	3R_25601792_SNP [dm3] 3R_29776070_SNP [dm6]	C	G	2.036e^-4	0.918	INTRON kay
3L	12047045	3L_12047045_SNP [dm3] 3L_12053945_SNP [dm6]	A	C	2.041e^-4	0.918	INTRON rols	silencer mE1_HDAC_PRE
2L	16431240	2L_16431240_SNP [dm3] 2L_16431240_SNP [dm6]	C	T	2.041e^-4	0.918	INTRON CG5888
X	10716361	X_10716361_INS [dm3] X_10822328_INS [dm6]	C	CACTCCC	2.045e^-4	0.918	UPSTREAM Imp INTRON Imp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3L	19379076	3L_19379076_SNP [dm3] 3L_19385976_SNP [dm6]	A	G	2.046e^-4	0.918	SYNONYMOUS_CODING CG32206
2L	12959894	2L_12959894_SNP [dm3] 2L_12959894_SNP [dm6]	A	G	2.054e^-4	0.918	INTERGENIC
3L	9604064	3L_9604064_SNP [dm3] 3L_9610964_SNP [dm6]	T	C	2.064e^-4	0.918	INTRON CG3280
3L	9604208	3L_9604208_SNP [dm3] 3L_9611108_SNP [dm6]	C	G	2.064e^-4	0.918	INTRON CG3280
3L	9604579	3L_9604579_SNP [dm3] 3L_9611479_SNP [dm6]	C	T	2.064e^-4	0.918	SYNONYMOUS_CODING CG3280	TF binding site mE1_TFBS_HSA
3L	9605948	3L_9605948_SNP [dm3] 3L_9612848_SNP [dm6]	C	T	2.064e^-4	0.918	NON_SYNONYMOUS_CODING CG3280	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	3360169	X_3360169_SNP [dm3] X_3466136_SNP [dm6]	A	T	2.067e^-4	0.918	SYNONYMOUS_CODING CG12206 INTRON CR44999
2L	22322264	2L_22322264_SNP [dm3] 2L_22322264_SNP [dm6]	A	G	2.069e^-4	0.918	INTRON CG17018
3L	8958470	3L_8958470_SNP [dm3] 3L_8965370_SNP [dm6]	G	A	2.094e^-4	0.918	SYNONYMOUS_CODING CG5653 UPSTREAM CG5660	TF binding site mE1_TFBS_chinmo
3R	20935787	3R_20935787_SNP [dm3] 3R_25110065_SNP [dm6]	A	C	2.096e^-4	0.918	INTRON CG13650
3L	1826360	3L_1826360_DEL [dm3] 3L_1826360_DEL [dm6]	CC	C	2.103e^-4	0.918	INTRON Cpr62Ba	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	7835633	2R_7835633_SNP [dm3] 2R_11948128_SNP [dm6]	C	A	2.107e^-4	0.918	INTRON CG13188
X	12923028	X_12923028_SNP [dm3] X_13028995_SNP [dm6]	A	G	2.122e^-4	0.918	INTRON rad
2L	5974817	2L_5974817_SNP [dm3] 2L_5974817_SNP [dm6]	G	C	2.124e^-4	0.918	INTRON chic
3R	23410885	3R_23410885_SNP [dm3] 3R_27585163_SNP [dm6]	T	C	2.126e^-4	0.918	SYNONYMOUS_CODING raps	TF binding site mE1_TFBS_chinmo
3L	19387442	3L_19387442_SNP [dm3] 3L_19394342_SNP [dm6]	G	A	2.127e^-4	0.918	INTRON CG32206
3R	11551441	3R_11551441_SNP [dm3] 3R_15725719_SNP [dm6]	A	G	2.145e^-4	0.918	INTERGENIC
X	3662962	X_3662962_SNP [dm3] X_3768929_SNP [dm6]	G	C	2.172e^-4	0.918	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	18431017	X_18431017_SNP [dm3] X_18536984_SNP [dm6]	T	C	2.174e^-4	0.918	INTRON Bx
X	2855045	X_2855045_SNP [dm3] X_2961012_SNP [dm6]	G	A	2.180e^-4	0.918	INTRON kirre & 1 other
3L	10274649	3L_10274649_SNP [dm3] 3L_10281549_SNP [dm6]	G	C	2.196e^-4	0.918	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2079325	2L_2079325_SNP [dm3] 2L_2079325_SNP [dm6]	A	G	2.222e^-4	0.918	UPSTREAM CG12674 INTRON dpr3
3L	752094	3L_752094_SNP [dm3] 3L_752094_SNP [dm6]	A	G	2.231e^-4	0.918	INTRON hng3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3R	25287411	3R_25287411_SNP [dm3] 3R_29461689_SNP [dm6]	A	G	2.234e^-4	0.918	UPSTREAM Ptp99A INTRON Ptp99A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	5864503	X_5864503_SNP [dm3] X_5970470_SNP [dm6]	G	C	2.235e^-4	0.918	INTRON Grip	TF binding site BDTNP1_TFBS_da
2R	15438759	2R_15438759_SNP [dm3] 2R_19551254_SNP [dm6]	G	A	2.239e^-4	0.918	UPSTREAM CG43111 INTRON sm
2L	12161236	2L_12161236_SNP [dm3] 2L_12161236_SNP [dm6]	C	T	2.247e^-4	0.918	UPSTREAM CG31861 INTRON CG31760
3L	10520264	3L_10520264_SNP [dm3] 3L_10527164_SNP [dm6]	C	G	2.249e^-4	0.918	INTRON A2bp1
3L	10396546	3L_10396546_SNP [dm3] 3L_10403446_SNP [dm6]	G	C	2.263e^-4	0.918	INTERGENIC
3R	24579863	3R_24579863_SNP [dm3] 3R_28754141_SNP [dm6]	T	C	2.280e^-4	0.918	INTERGENIC	TF binding site mE1_TFBS_inv
2R	7119874	2R_7119874_SNP [dm3] 2R_11232369_SNP [dm6]	C	G	2.303e^-4	0.918	UTR_5_PRIME metro DOWNSTREAM CG13218	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2R	14767026	2R_14767026_SNP [dm3] 2R_18879521_SNP [dm6]	C	T	2.306e^-4	0.918	INTRON sano	TF binding site BDTNP1_TFBS_dl
3R	26061019	3R_26061019_SNP [dm3] 3R_30235297_SNP [dm6]	A	T	2.309e^-4	0.918	INTERGENIC
3L	12133468	3L_12133468_SNP [dm3] 3L_12140368_SNP [dm6]	G	A	2.322e^-4	0.918	INTRON RhoGAP68F
3R	11805201	3R_11805201_SNP [dm3] 3R_15979479_SNP [dm6]	A	G	2.331e^-4	0.918	SYNONYMOUS_CODING Hel89B	TF binding site mE1_TFBS_cad
3R	11554090	3R_11554090_SNP [dm3] 3R_15728368_SNP [dm6]	T	C	2.332e^-4	0.918	INTERGENIC
3L	16582366	3L_16582366_SNP [dm3] 3L_16589266_SNP [dm6]	G	A	2.343e^-4	0.918	SYNONYMOUS_CODING l_3_73Ah DOWNSTREAM tra	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	2540308	3L_2540308_SNP [dm3] 3L_2540308_SNP [dm6]	A	G	2.348e^-4	0.918	INTRON Spn
3R	13651061	3R_13651061_SNP [dm3] 3R_17825339_SNP [dm6]	C	A	2.360e^-4	0.918	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11595799	3L_11595799_SNP [dm3] 3L_11602699_SNP [dm6]	G	A	2.368e^-4	0.918	UTR_5_PRIME CG7368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
X	5221274	X_5221274_SNP [dm3] X_5327241_SNP [dm6]	T	C	2.374e^-4	0.918	UTR_3_PRIME CG3309 DOWNSTREAM Mcm3
3R	10607649	3R_10607649_SNP [dm3] 3R_14781927_SNP [dm6]	A	C	2.377e^-4	0.918	INTRON jvl
2R	7833000	2R_7833000_SNP [dm3] 2R_11945495_SNP [dm6]	A	G	2.380e^-4	0.918	INTRON CG13188
3L	19418229	3L_19418229_SNP [dm3] 3L_19425129_SNP [dm6]	A	T	2.388e^-4	0.918	UPSTREAM CR32205 DOWNSTREAM CG33255 & 1 other INTERGENIC	transposable element FlyBase
2L	8737937	2L_8737937_INS [dm3] 2L_8737937_INS [dm6]	T	TTT	2.388e^-4	0.918	INTRON raw
3L	9497487	3L_9497487_SNP [dm3] 3L_9504387_SNP [dm6]	T	A	2.390e^-4	0.918	INTRON path	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	9908241	X_9908241_SNP [dm3] X_10014208_SNP [dm6]	T	A	2.405e^-4	0.918	UTR_3_PRIME CG2990
2L	20763432	2L_20763432_SNP [dm3] 2L_20763432_SNP [dm6]	C	A	2.409e^-4	0.918	INTRON dia
2L	3821084	2L_3821084_SNP [dm3] 2L_3821084_SNP [dm6]	G	A	2.430e^-4	0.918	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11595425	3L_11595425_SNP [dm3] 3L_11602325_SNP [dm6]	A	G	2.431e^-4	0.918	INTRON CG7368	TF binding site mE1_TFBS_inv
3L	11595434	3L_11595434_SNP [dm3] 3L_11602334_SNP [dm6]	G	A	2.431e^-4	0.918	INTRON CG7368	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	11595413	3L_11595413_SNP [dm3] 3L_11602313_SNP [dm6]	T	C	2.432e^-4	0.918	INTRON CG7368	TF binding site mE1_TFBS_inv
3R	9730106	3R_9730106_SNP [dm3] 3R_13904384_SNP [dm6]	A	G	2.432e^-4	0.918	UTR_3_PRIME ems
3R	11760560	3R_11760560_SNP [dm3] 3R_15934838_SNP [dm6]	G	A	2.437e^-4	0.918	UTR_3_PRIME blp UPSTREAM Sap47	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl mE1_TFBS_Ubx
X	5865789	X_5865789_INS [dm3] X_5971756_INS [dm6]	A	ACTAA	2.446e^-4	0.918	INTRON Grip
3L	11595711	3L_11595711_SNP [dm3] 3L_11602611_SNP [dm6]	G	A	2.447e^-4	0.918	INTRON CG7368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	11595714	3L_11595714_SNP [dm3] 3L_11602614_SNP [dm6]	T	C	2.447e^-4	0.918	INTRON CG7368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	3962104	2L_3962104_SNP [dm3] 2L_3962104_SNP [dm6]	A	G	2.468e^-4	0.918	INTRON fred
3R	13869652	3R_13869652_DEL [dm3] 3R_18043930_DEL [dm6]	TA	C	2.481e^-4	0.918	INTERGENIC
3L	11595724	3L_11595724_SNP [dm3] 3L_11602624_SNP [dm6]	T	C	2.488e^-4	0.918	INTRON CG7368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2R	8134270	2R_8134270_MNP [dm3] 2R_12246765_MNP [dm6]	TCA	CGT	2.498e^-4	0.918	EXON CR44315
3R	9948570	3R_9948570_SNP [dm3] 3R_14122848_SNP [dm6]	C	A	2.501e^-4	0.918	SYNONYMOUS_CODING twf UPSTREAM Abi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	16704921	3L_16704921_SNP [dm3] 3L_16711821_SNP [dm6]	A	G	2.536e^-4	0.918	UPSTREAM Dab & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	18968767	2R_18968767_SNP [dm3] 2R_23081244_SNP [dm6]	A	C	2.540e^-4	0.918	SYNONYMOUS_CODING Gr59a UPSTREAM Gr59b	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
2R	18968770	2R_18968770_SNP [dm3] 2R_23081247_SNP [dm6]	C	A	2.540e^-4	0.918	SYNONYMOUS_CODING Gr59a UPSTREAM Gr59b	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
3L	16062470	3L_16062470_SNP [dm3] 3L_16069370_SNP [dm6]	A	T	2.540e^-4	0.918	INTRON Mbs
2L	6906861	2L_6906861_SNP [dm3] 2L_6906861_SNP [dm6]	T	A	2.545e^-4	0.918	UTR_3_PRIME CG13773 DOWNSTREAM Nlg2
2L	7535284	2L_7535284_SNP [dm3] 2L_7535284_SNP [dm6]	A	T	2.547e^-4	0.918	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	14705047	2L_14705047_SNP [dm3] 2L_14705047_SNP [dm6]	G	A	2.556e^-4	0.918	INTERGENIC
3L	2653352	3L_2653352_SNP [dm3] 3L_2653352_SNP [dm6]	C	T	2.577e^-4	0.918	UTR_5_PRIME CG42304 UTR_3_PRIME Snup
2R	20042996	2R_20042996_SNP [dm3] 2R_24155473_SNP [dm6]	A	G	2.578e^-4	0.918	INTRON Dat
3L	9606685	3L_9606685_SNP [dm3] 3L_9613585_SNP [dm6]	G	A	2.594e^-4	0.918	SYNONYMOUS_CODING CG3280	TF binding site mE1_TFBS_chinmo
2L	9571456	2L_9571456_SNP [dm3] 2L_9571456_SNP [dm6]	A	T	2.599e^-4	0.918	INTRON CG3838
3L	11427311	3L_11427311_SNP [dm3] 3L_11434211_SNP [dm6]	T	C	2.622e^-4	0.918	DOWNSTREAM CG6149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	2988830	3L_2988830_SNP [dm3] 3L_2988830_SNP [dm6]	A	G	2.622e^-4	0.918	INTERGENIC
2L	6565848	2L_6565848_SNP [dm3] 2L_6565848_SNP [dm6]	G	A	2.627e^-4	0.918	SYNONYMOUS_CODING CG13766	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	2969058	2L_2969058_SNP [dm3] 2L_2969058_SNP [dm6]	G	A	2.636e^-4	0.918	SYNONYMOUS_CODING Ts DOWNSTREAM Rbp9 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	3659919	X_3659919_SNP [dm3] X_3765886_SNP [dm6]	T	C	2.638e^-4	0.918	INTRON tlk
2L	20763416	2L_20763416_SNP [dm3] 2L_20763416_SNP [dm6]	A	G	2.641e^-4	0.918	INTRON dia
2L	9561704	2L_9561704_SNP [dm3] 2L_9561704_SNP [dm6]	G	A	2.641e^-4	0.918	INTRON jp
2L	2354319	2L_2354319_SNP [dm3] 2L_2354319_SNP [dm6]	T	C	2.647e^-4	0.918	SYNONYMOUS_CODING eys INTRON CG9967	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8134289	2R_8134289_SNP [dm3] 2R_12246784_SNP [dm6]	T	C	2.655e^-4	0.918	EXON CR44315
X	9908182	X_9908182_SNP [dm3] X_10014149_SNP [dm6]	G	A	2.661e^-4	0.918	UTR_3_PRIME CG2990
3L	2771972	3L_2771972_SNP [dm3] 3L_2771972_SNP [dm6]	C	T	2.666e^-4	0.918	UTR_5_PRIME CG9977 DOWNSTREAM CG12093	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	11256799	X_11256799_SNP [dm3] X_11362766_SNP [dm6]	C	A	2.671e^-4	0.918	INTRON hop
3L	12131675	3L_12131675_SNP [dm3] 3L_12138575_SNP [dm6]	T	A	2.671e^-4	0.918	UTR_5_PRIME l_3_neo18 UPSTREAM RhoGAP68F & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Ubx
3L	7648057	3L_7648057_SNP [dm3] 3L_7654957_SNP [dm6]	T	A	2.688e^-4	0.918	UPSTREAM CG7492 DOWNSTREAM Ank2 INTRON CG32373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7648223	3L_7648223_SNP [dm3] 3L_7655123_SNP [dm6]	C	T	2.688e^-4	0.918	UPSTREAM CG7492 DOWNSTREAM Ank2 INTRON CG32373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18488951	2R_18488951_SNP [dm3] 2R_22601446_SNP [dm6]	G	A	2.692e^-4	0.918	DOWNSTREAM CG4269 INTRON CG4294	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25060747	3R_25060747_SNP [dm3] 3R_29235025_SNP [dm6]	C	G	2.696e^-4	0.918	UTR_3_PRIME CG15817 DOWNSTREAM CG11951
2R	6043474	2R_6043474_SNP [dm3] 2R_10155969_SNP [dm6]	A	T	2.696e^-4	0.918	UTR_3_PRIME mlt DOWNSTREAM mlt INTRON KCNQ
3R	15061796	3R_15061796_SNP [dm3] 3R_19236074_SNP [dm6]	G	A	2.696e^-4	0.918	INTRON unc79
3L	10326793	3L_10326793_SNP [dm3] 3L_10333693_SNP [dm6]	G	A	2.712e^-4	0.918	INTERGENIC
2R	8943660	2R_8943660_SNP [dm3] 2R_13056155_SNP [dm6]	G	T	2.729e^-4	0.918	UTR_3_PRIME Drl-2 DOWNSTREAM Drl-2
3R	14258901	3R_14258901_DEL [dm3] 3R_18433179_DEL [dm6]	GTTTGTTTG	G	2.731e^-4	0.918	INTRON fru
3L	6724440	3L_6724440_INS [dm3] 3L_6731340_INS [dm6]	G	GCTG	2.736e^-4	0.918	CODON_INSERTION dikar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4148869	2L_4148869_SNP [dm3] 2L_4148869_SNP [dm6]	C	T	2.738e^-4	0.918	UPSTREAM CG2955 INTERGENIC
3L	13736076	3L_13736076_SNP [dm3] 3L_13742976_SNP [dm6]	C	A	2.743e^-4	0.918	INTRON bru-3
2L	7559420	2L_7559420_SNP [dm3] 2L_7559420_SNP [dm6]	G	A	2.747e^-4	0.918	INTRON RapGAP1
X	18842984	X_18842984_SNP [dm3] X_18948951_SNP [dm6]	C	T	2.748e^-4	0.918	INTRON CG43759	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	18906786	3R_18906786_SNP [dm3] 3R_23081064_SNP [dm6]	A	G	2.752e^-4	0.918	INTRON CG13830
3R	27355855	3R_27355855_SNP [dm3] 3R_31530133_SNP [dm6]	T	C	2.761e^-4	0.918	INTERGENIC
3L	15349913	3L_15349913_SNP [dm3] 3L_15356813_SNP [dm6]	G	A	2.768e^-4	0.918	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	16984985	2R_16984985_SNP [dm3] 2R_21097480_SNP [dm6]	T	C	2.769e^-4	0.918	UPSTREAM CG34396 & 1 other INTRON CG34396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	7392440	2L_7392440_SNP [dm3] 2L_7392440_SNP [dm6]	A	G	2.770e^-4	0.918	INTRON CG5160
X	6201180	X_6201180_SNP [dm3] X_6307147_SNP [dm6]	A	G	2.781e^-4	0.918	DOWNSTREAM CG3823 INTERGENIC
2R	16984897	2R_16984897_SNP [dm3] 2R_21097392_SNP [dm6]	C	T	2.784e^-4	0.918	UPSTREAM CG34396 & 1 other INTRON CG34396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12551568	2R_12551568_SNP [dm3] 2R_16664063_SNP [dm6]	T	G	2.785e^-4	0.918	UTR_5_PRIME Picot UPSTREAM Picot
2R	6111906	2R_6111906_SNP [dm3] 2R_10224401_SNP [dm6]	G	A	2.796e^-4	0.918	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	15257074	3R_15257074_SNP [dm3] 3R_19431352_SNP [dm6]	G	T	2.807e^-4	0.918	INTRON CG31221
3L	9310613	3L_9310613_SNP [dm3] 3L_9317513_SNP [dm6]	C	T	2.808e^-4	0.918	INTERGENIC
3L	9606361	3L_9606361_SNP [dm3] 3L_9613261_SNP [dm6]	C	T	2.814e^-4	0.918	SYNONYMOUS_CODING CG3280	TF binding site mE1_TFBS_chinmo
3L	9606733	3L_9606733_SNP [dm3] 3L_9613633_SNP [dm6]	C	T	2.814e^-4	0.918	SYNONYMOUS_CODING CG3280	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	3662808	X_3662808_DEL [dm3] X_3768775_DEL [dm6]	TGT	T	2.815e^-4	0.918	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11414881	3L_11414881_SNP [dm3] 3L_11421781_SNP [dm6]	G	A	2.832e^-4	0.918	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16388552	3R_16388552_SNP [dm3] 3R_20562830_SNP [dm6]	G	A	2.845e^-4	0.918	SYNONYMOUS_CODING CG10877 INTRON CG5191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21387627	3R_21387627_SNP [dm3] 3R_25561905_SNP [dm6]	G	A	2.849e^-4	0.918	INTRON msi
2L	2964410	2L_2964410_SNP [dm3] 2L_2964410_SNP [dm6]	T	C	2.852e^-4	0.918	UTR_3_PRIME Rbp9	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	10863278	X_10863278_SNP [dm3] X_10969245_SNP [dm6]	G	C	2.878e^-4	0.918	SYNONYMOUS_CODING CG42339
2L	22106361	2L_22106361_SNP [dm3] 2L_22106361_SNP [dm6]	G	T	2.879e^-4	0.918	UPSTREAM CG15219 DOWNSTREAM CG10834 INTERGENIC
X	9829057	X_9829057_SNP [dm3] X_9935024_SNP [dm6]	A	T	2.888e^-4	0.918	INTERGENIC
X	9829086	X_9829086_SNP [dm3] X_9935053_SNP [dm6]	A	T	2.888e^-4	0.918	INTERGENIC
2L	16558338	2L_16558338_SNP [dm3] 2L_16558338_SNP [dm6]	G	T	2.901e^-4	0.918	NON_SYNONYMOUS_CODING CG42389	TF binding site mE1_TFBS_cad
2L	3977220	2L_3977220_SNP [dm3] 2L_3977220_SNP [dm6]	T	C	2.904e^-4	0.918	INTRON fred
2R	16984873	2R_16984873_SNP [dm3] 2R_21097368_SNP [dm6]	T	C	2.904e^-4	0.918	UPSTREAM CG34396 & 1 other INTRON CG34396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12961774	2L_12961774_INS [dm3] 2L_12961774_INS [dm6]	A	AA	2.915e^-4	0.918	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	18204844	2R_18204844_DEL [dm3] 2R_22317339_DEL [dm6]	TT	T	2.920e^-4	0.918	UPSTREAM Gp150 DOWNSTREAM CR44758 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	20960323	3R_20960323_SNP [dm3] 3R_25134601_SNP [dm6]	C	T	2.922e^-4	0.918	SYNONYMOUS_CODING Bili
3L	12128460	3L_12128460_SNP [dm3] 3L_12135360_SNP [dm6]	G	A	2.946e^-4	0.918	SYNONYMOUS_CODING CG5645	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	3708531	X_3708531_SNP [dm3] X_3814498_SNP [dm6]	C	A	2.949e^-4	0.918	INTRON ec
2R	9722905	2R_9722905_SNP [dm3] 2R_13835400_SNP [dm6]	G	A	2.949e^-4	0.918	UPSTREAM CG6337 INTERGENIC
3R	25303931	3R_25303931_SNP [dm3] 3R_29478209_SNP [dm6]	G	A	2.949e^-4	0.918	INTRON Ptp99A
X	18430691	X_18430691_SNP [dm3] X_18536658_SNP [dm6]	A	C	2.957e^-4	0.918	INTRON Bx
3R	17403022	3R_17403022_SNP [dm3] 3R_21577300_SNP [dm6]	A	G	2.968e^-4	0.918	SYNONYMOUS_CODING InR
3L	12147990	3L_12147990_SNP [dm3] 3L_12154890_SNP [dm6]	A	T	2.969e^-4	0.918	SYNONYMOUS_CODING Nrx-IV	TF binding site mE1_TFBS_sens
2R	18351231	2R_18351231_DEL [dm3] 2R_22463726_DEL [dm6]	AACCTCA	GGAGG	2.972e^-4	0.918	INTRON CG10384	TF binding site mE1_TFBS_chinmo
3R	13650945	3R_13650945_SNP [dm3] 3R_17825223_SNP [dm6]	C	A	2.973e^-4	0.918	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	10129266	2R_10129266_SNP [dm3] 2R_14241761_SNP [dm6]	A	G	2.979e^-4	0.918	NON_SYNONYMOUS_CODING CG8494	TF binding site mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
X	20724361	X_20724361_SNP [dm3] X_20853334_SNP [dm6]	G	T	2.989e^-4	0.918	INTRON shakB
2L	2079327	2L_2079327_SNP [dm3] 2L_2079327_SNP [dm6]	G	A	2.999e^-4	0.918	UPSTREAM CG12674 INTRON dpr3
2R	7684900	2R_7684900_SNP [dm3] 2R_11797395_SNP [dm6]	A	G	3.001e^-4	0.918	INTRON ths	TF binding site mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
2R	16489225	2R_16489225_SNP [dm3] 2R_20601720_SNP [dm6]	A	G	3.001e^-4	0.918	INTRON bl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1265290	3L_1265290_SNP [dm3] 3L_1265290_SNP [dm6]	T	A	3.004e^-4	0.918	UPSTREAM CG9134 INTRON CG9134	TF binding site mE1_TFBS_Trl
3R	11079384	3R_11079384_SNP [dm3] 3R_15253662_SNP [dm6]	A	G	3.007e^-4	0.918	SYNONYMOUS_CODING CG42404 UTR_3_PRIME CG42404	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20808630	X_20808630_SNP [dm3] X_20937603_SNP [dm6]	A	T	3.011e^-4	0.918	NON_SYNONYMOUS_CODING Npc1b	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	18476349	3R_18476349_SNP [dm3] 3R_22650627_SNP [dm6]	G	A	3.019e^-4	0.918	INTRON CG45058
3R	18476352	3R_18476352_SNP [dm3] 3R_22650630_SNP [dm6]	G	A	3.019e^-4	0.918	INTRON CG45058
3R	18476354	3R_18476354_SNP [dm3] 3R_22650632_SNP [dm6]	T	C	3.019e^-4	0.918	INTRON CG45058
3R	18476405	3R_18476405_SNP [dm3] 3R_22650683_SNP [dm6]	T	A	3.019e^-4	0.918	INTRON CG45058
3L	14486285	3L_14486285_SNP [dm3] 3L_14493185_SNP [dm6]	G	C	3.025e^-4	0.918	INTRON bbg
2R	12086762	2R_12086762_SNP [dm3] 2R_16199257_SNP [dm6]	A	G	3.025e^-4	0.918	UTR_3_PRIME CG42837 & 1 other DOWNSTREAM shark	TF binding site mE1_TFBS_cad
X	2854966	X_2854966_SNP [dm3] X_2960933_SNP [dm6]	A	C	3.031e^-4	0.918	INTRON kirre & 1 other
3R	14319271	3R_14319271_SNP [dm3] 3R_18493549_SNP [dm6]	T	C	3.039e^-4	0.918	INTRON fru
3L	13291651	3L_13291651_SNP [dm3] 3L_13298551_SNP [dm6]	C	T	3.043e^-4	0.918	UPSTREAM CR45255 DOWNSTREAM CR45253 & 1 other EXON CR45254	TF binding site BDTNP1_TFBS_prd
3L	10740346	3L_10740346_SNP [dm3] 3L_10747246_SNP [dm6]	A	G	3.044e^-4	0.918	INTERGENIC
X	4059704	X_4059704_SNP [dm3] X_4165671_SNP [dm6]	T	C	3.047e^-4	0.918	INTRON Fas2
2R	14186924	2R_14186924_DEL [dm3] 2R_18299419_DEL [dm6]	AAGAA	A	3.050e^-4	0.918	DOWNSTREAM CG18539 INTRON sbb & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10231878	3L_10231878_SNP [dm3] 3L_10238778_SNP [dm6]	C	T	3.053e^-4	0.918	INTERGENIC
2R	10710564	2R_10710564_SNP [dm3] 2R_14823059_SNP [dm6]	C	T	3.077e^-4	0.918	DOWNSTREAM CR45329 INTERGENIC
2R	8127058	2R_8127058_DEL [dm3] 2R_12239553_DEL [dm6]	AAA	A	3.089e^-4	0.918	UPSTREAM CG13170 INTERGENIC
3L	2694837	3L_2694837_SNP [dm3] 3L_2694837_SNP [dm6]	G	A	3.092e^-4	0.918	INTRON Fife
2L	4204566	2L_4204566_SNP [dm3] 2L_4204566_SNP [dm6]	C	T	3.094e^-4	0.918	NON_SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_sens
3L	7648079	3L_7648079_SNP [dm3] 3L_7654979_SNP [dm6]	T	G	3.104e^-4	0.918	UPSTREAM CG7492 DOWNSTREAM Ank2 INTRON CG32373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	13345108	X_13345108_SNP [dm3] X_13451075_SNP [dm6]	T	A	3.107e^-4	0.918	INTRON Neto	TF binding site BDTNP1_TFBS_dl
X	14251932	X_14251932_DEL [dm3] X_14357899_DEL [dm6]	TGTGTGT	T	3.116e^-4	0.918	INTRON dpr8
X	14251983	X_14251983_SNP [dm3] X_14357950_SNP [dm6]	T	C	3.116e^-4	0.918	INTRON dpr8
X	9908165	X_9908165_SNP [dm3] X_10014132_SNP [dm6]	G	A	3.124e^-4	0.918	UTR_3_PRIME CG2990
2R	18965558	2R_18965558_SNP [dm3] 2R_23078035_SNP [dm6]	A	G	3.135e^-4	0.918	SYNONYMOUS_CODING Art7	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16984519	2R_16984519_SNP [dm3] 2R_21097014_SNP [dm6]	G	A	3.137e^-4	0.918	UPSTREAM CG34396 INTRON CG34396 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	2694696	3L_2694696_SNP [dm3] 3L_2694696_SNP [dm6]	C	G	3.138e^-4	0.918	INTRON Fife
2L	12330203	2L_12330203_SNP [dm3] 2L_12330203_SNP [dm6]	T	A	3.142e^-4	0.918	INTERGENIC
3R	7945858	3R_7945858_SNP [dm3] 3R_12120136_SNP [dm6]	A	T	3.142e^-4	0.918	INTERGENIC
3L	4001714	3L_4001714_SNP [dm3] 3L_4001714_SNP [dm6]	T	C	3.148e^-4	0.918	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	13570258	X_13570258_SNP [dm3] X_13676225_SNP [dm6]	A	T	3.152e^-4	0.918	UTR_3_PRIME CG15760 UPSTREAM CG11162
X	13570260	X_13570260_DEL [dm3] X_13676227_DEL [dm6]	TCAACTAAACGTGT...	T	3.152e^-4	0.918	UTR_3_PRIME CG15760 UPSTREAM CG11162 DOWNSTREAM CG15760 INTRAGENIC CG15760 INTERGENIC
X	13570289	X_13570289_SNP [dm3] X_13676256_SNP [dm6]	T	C	3.152e^-4	0.918	UPSTREAM CG11162 DOWNSTREAM CG15760 INTERGENIC
2R	8127570	2R_8127570_SNP [dm3] 2R_12240065_SNP [dm6]	T	G	3.155e^-4	0.918	UPSTREAM CG13170 INTERGENIC
2R	8127572	2R_8127572_SNP [dm3] 2R_12240067_SNP [dm6]	A	G	3.155e^-4	0.918	UPSTREAM CG13170 INTERGENIC
2R	8127573	2R_8127573_SNP [dm3] 2R_12240068_SNP [dm6]	T	A	3.155e^-4	0.918	UPSTREAM CG13170 INTERGENIC
2R	8127574	2R_8127574_DEL [dm3] 2R_12240069_DEL [dm6]	TAA	T	3.155e^-4	0.918	UPSTREAM CG13170 INTERGENIC
2R	13309878	2R_13309878_SNP [dm3] 2R_17422373_SNP [dm6]	G	T	3.155e^-4	0.918	INTRON l_2_k01209	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	24493130	3R_24493130_SNP [dm3] 3R_28667408_SNP [dm6]	A	T	3.156e^-4	0.918	INTERGENIC
2R	8510937	2R_8510937_SNP [dm3] 2R_12623432_SNP [dm6]	T	C	3.157e^-4	0.918	UPSTREAM CG30054 DOWNSTREAM Galphaq INTERGENIC
X	11769504	X_11769504_SNP [dm3] X_11875471_SNP [dm6]	G	A	3.179e^-4	0.918	UTR_3_PRIME CG10352 DOWNSTREAM CG15739
X	6697672	X_6697672_SNP [dm3] X_6803639_SNP [dm6]	C	T	3.200e^-4	0.918	UPSTREAM pod1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2L	15797014	2L_15797014_SNP [dm3] 2L_15797014_SNP [dm6]	A	G	3.207e^-4	0.918	INTERGENIC
2L	15797026	2L_15797026_SNP [dm3] 2L_15797026_SNP [dm6]	T	C	3.207e^-4	0.918	INTERGENIC
3R	24510367	3R_24510367_SNP [dm3] 3R_28684645_SNP [dm6]	A	T	3.214e^-4	0.918	INTRON CG9990
2R	15817671	2R_15817671_SNP [dm3] 2R_19930166_SNP [dm6]	C	A	3.219e^-4	0.918	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20030786	X_20030786_SNP [dm3] X_20136753_SNP [dm6]	T	C	3.220e^-4	0.918	SYNONYMOUS_CODING CG15322	TF binding site mE1_TFBS_chinmo
2R	10715629	2R_10715629_SNP [dm3] 2R_14828124_SNP [dm6]	A	G	3.223e^-4	0.918	INTERGENIC
2L	17338658	2L_17338658_SNP [dm3] 2L_17338658_SNP [dm6]	A	C	3.224e^-4	0.918	INTERGENIC
3R	17543861	3R_17543861_SNP [dm3] 3R_21718139_SNP [dm6]	A	C	3.237e^-4	0.918	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
X	6517434	X_6517434_SNP [dm3] X_6623401_SNP [dm6]	G	C	3.238e^-4	0.918	INTRON pigs	TF binding site mE1_TFBS_HSA
2L	8223199	2L_8223199_SNP [dm3] 2L_8223199_SNP [dm6]	A	G	3.276e^-4	0.918	INTRON Pvr
2R	19178568	2R_19178568_SNP [dm3] 2R_23291045_SNP [dm6]	G	C	3.286e^-4	0.918	EXON CR44783
2R	19178569	2R_19178569_SNP [dm3] 2R_23291046_SNP [dm6]	C	A	3.286e^-4	0.918	EXON CR44783
2L	1185812	2L_1185812_SNP [dm3] 2L_1185812_SNP [dm6]	A	G	3.299e^-4	0.918	UTR_5_PRIME CG5001 UPSTREAM CG5001 DOWNSTREAM Tgt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	3658424	X_3658424_SNP [dm3] X_3764391_SNP [dm6]	T	G	3.310e^-4	0.918	INTRON tlk	TF binding site BDTNP1_TFBS_dl
2L	5478448	2L_5478448_SNP [dm3] 2L_5478448_SNP [dm6]	T	C	3.321e^-4	0.918	INTERGENIC
2L	5478490	2L_5478490_SNP [dm3] 2L_5478490_SNP [dm6]	T	A	3.321e^-4	0.918	INTERGENIC	TF binding site mE1_TFBS_cad
X	6678791	X_6678791_SNP [dm3] X_6784758_SNP [dm6]	G	A	3.324e^-4	0.918	INTRON C3G
3L	10710518	3L_10710518_SNP [dm3] 3L_10717418_SNP [dm6]	T	C	3.326e^-4	0.918	INTERGENIC
2R	17158227	2R_17158227_SNP [dm3] 2R_21270722_SNP [dm6]	C	T	3.349e^-4	0.918	INTRON Rgk3
3L	19178748	3L_19178748_SNP [dm3] 3L_19185648_SNP [dm6]	T	G	3.364e^-4	0.918	INTRON fz2
3R	27420640	3R_27420640_SNP [dm3] 3R_31594918_SNP [dm6]	C	G	3.368e^-4	0.918	UTR_3_PRIME RpL6 DOWNSTREAM CG1774
3R	7939187	3R_7939187_DEL [dm3] 3R_12113465_DEL [dm6]	AGA	A	3.372e^-4	0.918	INTERGENIC
2L	11030569	2L_11030569_DEL [dm3] 2L_11030569_DEL [dm6]	ACGTG	A	3.376e^-4	0.918	INTRON Samuel	TF binding site mE1_TFBS_cad
3R	19960414	3R_19960414_SNP [dm3] 3R_24134692_SNP [dm6]	T	C	3.392e^-4	0.918	UPSTREAM Sec10 DOWNSTREAM Tsc1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3R	19960418	3R_19960418_SNP [dm3] 3R_24134696_SNP [dm6]	T	G	3.392e^-4	0.918	UPSTREAM Sec10 DOWNSTREAM Tsc1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3R	19960607	3R_19960607_SNP [dm3] 3R_24134885_SNP [dm6]	T	A	3.392e^-4	0.918	UTR_5_PRIME Sec10 DOWNSTREAM Tsc1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
X	1081188	X_1081188_SNP [dm3] X_1187155_SNP [dm6]	T	A	3.394e^-4	0.918	INTRON CG14626	TF binding site mE1_TFBS_chinmo
2L	7393003	2L_7393003_SNP [dm3] 2L_7393003_SNP [dm6]	C	A	3.397e^-4	0.918	INTRON CG5160
3R	19048924	3R_19048924_SNP [dm3] 3R_23223202_SNP [dm6]	A	T	3.402e^-4	0.918	INTRON cnc
X	15363520	X_15363520_SNP [dm3] X_15469487_SNP [dm6]	C	G	3.405e^-4	0.918	SYNONYMOUS_CODING Grip128	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4935215	2L_4935215_SNP [dm3] 2L_4935215_SNP [dm6]	A	T	3.406e^-4	0.918	INTRON hoe2	TF binding site mE1_TFBS_chinmo
2R	7813963	2R_7813963_SNP [dm3] 2R_11926458_SNP [dm6]	T	G	3.416e^-4	0.918	INTERGENIC
3L	12047375	3L_12047375_DEL [dm3] 3L_12054275_DEL [dm6]	AAGTCT	A	3.428e^-4	0.918	INTRON rols	silencer mE1_HDAC_PRE
X	11769419	X_11769419_INS [dm3] X_11875386_INS [dm6]	A	AA	3.440e^-4	0.918	UTR_3_PRIME CG10352 DOWNSTREAM CG15739
X	12379396	X_12379396_SNP [dm3] X_12485363_SNP [dm6]	T	A	3.446e^-4	0.918	INTERGENIC
2L	16389026	2L_16389026_SNP [dm3] 2L_16389026_SNP [dm6]	A	G	3.448e^-4	0.918	INTERGENIC
2R	16457507	2R_16457507_SNP [dm3] 2R_20570002_SNP [dm6]	A	T	3.456e^-4	0.918	INTRON qsm	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	8400796	3R_8400796_SNP [dm3] 3R_12575074_SNP [dm6]	A	G	3.456e^-4	0.918	INTRON Octbeta2R
3L	4206940	3L_4206940_SNP [dm3] 3L_4206940_SNP [dm6]	G	A	3.458e^-4	0.918	DOWNSTREAM Cpr64Aa INTRON CG43367
2R	6542810	2R_6542810_SNP [dm3] 2R_10655305_SNP [dm6]	T	C	3.461e^-4	0.918	INTERGENIC
2R	1564968	2R_1564968_DEL [dm3] 2R_5677463_DEL [dm6]	TTGTGTAGAT	T	3.472e^-4	0.918	UTR_3_PRIME scaf
2R	1564990	2R_1564990_SNP [dm3] 2R_5677485_SNP [dm6]	T	C	3.472e^-4	0.918	UTR_3_PRIME scaf
2R	1564992	2R_1564992_SNP [dm3] 2R_5677487_SNP [dm6]	T	C	3.472e^-4	0.918	UTR_3_PRIME scaf
3L	18756805	3L_18756805_SNP [dm3] 3L_18763705_SNP [dm6]	A	G	3.477e^-4	0.918	SYNONYMOUS_CODING ftz-f1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	23966466	3R_23966466_SNP [dm3] 3R_28140744_SNP [dm6]	C	T	3.481e^-4	0.918	INTERGENIC
2L	22322001	2L_22322001_SNP [dm3] 2L_22322001_SNP [dm6]	C	T	3.508e^-4	0.918	INTRON CG17018	transposable element FlyBase
3R	23955110	3R_23955110_SNP [dm3] 3R_28129388_SNP [dm6]	G	T	3.509e^-4	0.918	INTERGENIC
3R	23955129	3R_23955129_SNP [dm3] 3R_28129407_SNP [dm6]	A	T	3.509e^-4	0.918	INTERGENIC
X	20724810	X_20724810_SNP [dm3] X_20853783_SNP [dm6]	A	T	3.510e^-4	0.918	INTRON shakB
X	2245857	X_2245857_SNP [dm3] X_2351824_SNP [dm6]	A	G	3.516e^-4	0.918	INTRON ptr
3R	21095985	3R_21095985_SNP [dm3] 3R_25270263_SNP [dm6]	G	T	3.519e^-4	0.918	SYNONYMOUS_CODING CG11889 START_GAINED CG11891 UTR_5_PRIME CG11891 UPSTREAM CR45214 DOWNSTREAM CR13656
3L	11116831	3L_11116831_DEL [dm3] 3L_11123731_DEL [dm6]	TAA	T	3.525e^-4	0.918	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11116893	3L_11116893_SNP [dm3] 3L_11123793_SNP [dm6]	G	T	3.525e^-4	0.918	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11116950	3L_11116950_SNP [dm3] 3L_11123850_SNP [dm6]	G	A	3.525e^-4	0.918	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11116951	3L_11116951_SNP [dm3] 3L_11123851_SNP [dm6]	T	A	3.525e^-4	0.918	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11116987	3L_11116987_SNP [dm3] 3L_11123887_SNP [dm6]	C	T	3.525e^-4	0.918	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11117289	3L_11117289_SNP [dm3] 3L_11124189_SNP [dm6]	C	T	3.525e^-4	0.918	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11117298	3L_11117298_SNP [dm3] 3L_11124198_SNP [dm6]	C	A	3.525e^-4	0.918	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11117299	3L_11117299_SNP [dm3] 3L_11124199_SNP [dm6]	C	A	3.525e^-4	0.918	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11117304	3L_11117304_SNP [dm3] 3L_11124204_SNP [dm6]	C	T	3.525e^-4	0.918	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11117308	3L_11117308_SNP [dm3] 3L_11124208_SNP [dm6]	G	A	3.525e^-4	0.918	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11117314	3L_11117314_DEL [dm3] 3L_11124214_DEL [dm6]	CACCC	C	3.525e^-4	0.918	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11117336	3L_11117336_SNP [dm3] 3L_11124236_SNP [dm6]	T	C	3.525e^-4	0.918	INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	11117358	3L_11117358_INS [dm3] 3L_11124258_INS [dm6]	T	TACCAT	3.525e^-4	0.918	INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	11117417	3L_11117417_SNP [dm3] 3L_11124317_SNP [dm6]	A	T	3.525e^-4	0.918	INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	11117580	3L_11117580_SNP [dm3] 3L_11124480_SNP [dm6]	G	A	3.525e^-4	0.918	INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	11117599	3L_11117599_DEL [dm3] 3L_11124499_DEL [dm6]	ATA	A	3.525e^-4	0.918	INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	11117606	3L_11117606_DEL [dm3] 3L_11124506_DEL [dm6]	ACTTCCGCT	TA	3.525e^-4	0.918	INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	11915344	3R_11915344_SNP [dm3] 3R_16089622_SNP [dm6]	C	A	3.528e^-4	0.918	INTRON Mhcl
3L	15623067	3L_15623067_SNP [dm3] 3L_15629967_SNP [dm6]	C	T	3.539e^-4	0.918	INTRON comm3
2R	16984983	2R_16984983_SNP [dm3] 2R_21097478_SNP [dm6]	C	G	3.541e^-4	0.918	UPSTREAM CG34396 & 1 other INTRON CG34396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	11591882	3R_11591882_SNP [dm3] 3R_15766160_SNP [dm6]	C	T	3.541e^-4	0.918	DOWNSTREAM CG5623 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	11591902	3R_11591902_SNP [dm3] 3R_15766180_SNP [dm6]	A	G	3.541e^-4	0.918	DOWNSTREAM CG5623 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	7941173	3R_7941173_DEL [dm3] 3R_12115451_DEL [dm6]	GTCG	G	3.557e^-4	0.918	INTERGENIC
2R	1674113	2R_1674113_INS [dm3] 2R_5786608_INS [dm6]	A	TAG	3.559e^-4	0.918	INTERGENIC
X	6491457	X_6491457_SNP [dm3] X_6597424_SNP [dm6]	A	G	3.569e^-4	0.918	SYNONYMOUS_CODING APC7 START_GAINED APC7 UTR_5_PRIME APC7 DOWNSTREAM Pat1
X	20808722	X_20808722_SNP [dm3] X_20937695_SNP [dm6]	T	C	3.582e^-4	0.918	INTRON Npc1b	TF binding site mE1_TFBS_inv
X	13570286	X_13570286_SNP [dm3] X_13676253_SNP [dm6]	C	T	3.597e^-4	0.918	UPSTREAM CG11162 DOWNSTREAM CG15760 INTERGENIC
X	6517400	X_6517400_SNP [dm3] X_6623367_SNP [dm6]	T	A	3.605e^-4	0.918	INTRON pigs	TF binding site mE1_TFBS_HSA
X	7767273	X_7767273_SNP [dm3] X_7873240_SNP [dm6]	A	G	3.616e^-4	0.918	UPSTREAM dec-1 EXON CR43615	TF binding site mE1_TFBS_chinmo
2R	20518050	2R_20518050_SNP [dm3] 2R_24630527_SNP [dm6]	A	T	3.622e^-4	0.918	UPSTREAM Cyp9c1 DOWNSTREAM CR43787 INTRON CG13594
2R	8134277	2R_8134277_SNP [dm3] 2R_12246772_SNP [dm6]	G	A	3.633e^-4	0.918	EXON CR44315
2R	13307218	2R_13307218_INS [dm3] 2R_17419713_INS [dm6]	G	GGA	3.642e^-4	0.918	UTR_5_PRIME cnk UPSTREAM l_2_k01209 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl mE1_TFBS_Ubx
2R	13307223	2R_13307223_SNP [dm3] 2R_17419718_SNP [dm6]	G	A	3.642e^-4	0.918	START_GAINED cnk UTR_5_PRIME cnk UPSTREAM l_2_k01209 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
2R	13307224	2R_13307224_SNP [dm3] 2R_17419719_SNP [dm6]	A	G	3.642e^-4	0.918	UTR_5_PRIME cnk UPSTREAM l_2_k01209 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
2R	13307320	2R_13307320_SNP [dm3] 2R_17419815_SNP [dm6]	T	A	3.642e^-4	0.918	UTR_5_PRIME cnk UPSTREAM l_2_k01209 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
3R	26000847	3R_26000847_SNP [dm3] 3R_30175125_SNP [dm6]	A	G	3.654e^-4	0.918	UPSTREAM Mlc2 DOWNSTREAM CG1983 INTERGENIC	regulatory region REDfly_CRMs
2L	9560862	2L_9560862_INS [dm3] 2L_9560862_INS [dm6]	T	TT	3.655e^-4	0.918	UPSTREAM jp INTRON jp
3R	7939122	3R_7939122_SNP [dm3] 3R_12113400_SNP [dm6]	A	G	3.658e^-4	0.918	INTERGENIC
3L	769691	3L_769691_SNP [dm3] 3L_769691_SNP [dm6]	G	T	3.668e^-4	0.918	UPSTREAM tRNA:CR32481 DOWNSTREAM tRNA:CR32480 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	770195	3L_770195_SNP [dm3] 3L_770195_SNP [dm6]	G	C	3.668e^-4	0.918	UPSTREAM tRNA:CR32481 DOWNSTREAM tRNA:CR32480 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	770528	3L_770528_SNP [dm3] 3L_770528_SNP [dm6]	T	G	3.668e^-4	0.918	DOWNSTREAM tRNA:CR32480 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	770531	3L_770531_SNP [dm3] 3L_770531_SNP [dm6]	C	T	3.668e^-4	0.918	DOWNSTREAM tRNA:CR32480 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	22182202	X_22182202_SNP [dm3] X_22780366_SNP [dm6]	A	G	3.668e^-4	0.918	INTRON CR44997	transposable element FlyBase
2R	1912326	2R_1912326_SNP [dm3] 2R_6024821_SNP [dm6]	G	T	3.668e^-4	0.918	INTERGENIC
2R	7793327	2R_7793327_SNP [dm3] 2R_11905822_SNP [dm6]	G	C	3.674e^-4	0.918	NON_SYNONYMOUS_CODING CG13183
X	10863611	X_10863611_SNP [dm3] X_10969578_SNP [dm6]	G	A	3.679e^-4	0.918	INTRON CG42339
3L	7801676	3L_7801676_SNP [dm3] 3L_7808576_SNP [dm6]	A	T	3.697e^-4	0.918	INTRON CG32369	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
X	6890022	X_6890022_SNP [dm3] X_6995989_SNP [dm6]	C	T	3.697e^-4	0.918	INTRON Inx7 EXON CR43837	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6890030	X_6890030_SNP [dm3] X_6995997_SNP [dm6]	C	A	3.697e^-4	0.918	INTRON Inx7 EXON CR43837	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17856255	2R_17856255_SNP [dm3] 2R_21968750_SNP [dm6]	G	A	3.700e^-4	0.918	SYNONYMOUS_CODING ppk9
2R	8551016	2R_8551016_SNP [dm3] 2R_12663511_SNP [dm6]	T	G	3.708e^-4	0.918	UPSTREAM nemy INTRON nemy	TF binding site mE1_TFBS_cad
3L	22021967	3L_22021967_SNP [dm3] 3L_22028867_SNP [dm6]	C	T	3.709e^-4	0.918	UPSTREAM CG7140 DOWNSTREAM CG43392 INTERGENIC
3L	22021972	3L_22021972_SNP [dm3] 3L_22028872_SNP [dm6]	T	C	3.709e^-4	0.918	UPSTREAM CG7140 DOWNSTREAM CG43392 INTERGENIC
2L	2367445	2L_2367445_SNP [dm3] 2L_2367445_SNP [dm6]	G	A	3.714e^-4	0.918	SYNONYMOUS_CODING Axud1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	761565	3L_761565_SNP [dm3] 3L_761565_SNP [dm6]	G	T	3.717e^-4	0.918	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med
2R	18968888	2R_18968888_SNP [dm3] 2R_23081365_SNP [dm6]	C	T	3.719e^-4	0.918	NON_SYNONYMOUS_CODING Gr59a UPSTREAM Gr59b	regulatory region REDfly_CRMs
3L	19331819	3L_19331819_SNP [dm3] 3L_19338719_SNP [dm6]	T	G	3.724e^-4	0.918	INTERGENIC
2L	22250640	2L_22250640_SNP [dm3] 2L_22250640_SNP [dm6]	T	C	3.732e^-4	0.918	NON_SYNONYMOUS_CODING Tif-IA
X	3658799	X_3658799_SNP [dm3] X_3764766_SNP [dm6]	A	G	3.732e^-4	0.918	INTRON tlk
3R	3315060	3R_3315060_SNP [dm3] 3R_7489338_SNP [dm6]	T	C	3.734e^-4	0.918	UPSTREAM alpha-Est10 INTRON alpha-Est10
2L	5478531	2L_5478531_SNP [dm3] 2L_5478531_SNP [dm6]	T	A	3.740e^-4	0.918	INTERGENIC	TF binding site mE1_TFBS_cad
3R	23960882	3R_23960882_SNP [dm3] 3R_28135160_SNP [dm6]	T	C	3.743e^-4	0.918	INTERGENIC
3R	9500641	3R_9500641_SNP [dm3] 3R_13674919_SNP [dm6]	G	C	3.746e^-4	0.918	UPSTREAM Task6 DOWNSTREAM CG9588 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sbb mE1_TFBS_Trl
2R	16899492	2R_16899492_SNP [dm3] 2R_21011987_SNP [dm6]	C	T	3.753e^-4	0.918	UTR_5_PRIME CG9346 UPSTREAM grau	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	7911238	2R_7911238_SNP [dm3] 2R_12023733_SNP [dm6]	A	C	3.778e^-4	0.918	NON_SYNONYMOUS_CODING CG8964	TF binding site mE1_TFBS_cad
2R	18942398	2R_18942398_SNP [dm3] 2R_23054875_SNP [dm6]	G	A	3.780e^-4	0.918	UPSTREAM CG44252 INTERGENIC
X	20807974	X_20807974_SNP [dm3] X_20936947_SNP [dm6]	A	T	3.782e^-4	0.918	SYNONYMOUS_CODING Npc1b	TF binding site mE1_TFBS_inv
X	20808352	X_20808352_SNP [dm3] X_20937325_SNP [dm6]	C	T	3.782e^-4	0.918	SYNONYMOUS_CODING Npc1b	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	20808662	X_20808662_SNP [dm3] X_20937635_SNP [dm6]	T	A	3.782e^-4	0.918	NON_SYNONYMOUS_CODING Npc1b	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	20808707	X_20808707_SNP [dm3] X_20937680_SNP [dm6]	A	G	3.782e^-4	0.918	SPLICE_SITE_REGION Npc1b INTRON Npc1b	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	20808808	X_20808808_SNP [dm3] X_20937781_SNP [dm6]	T	A	3.782e^-4	0.918	SYNONYMOUS_CODING Npc1b	TF binding site mE1_TFBS_inv
3L	7094238	3L_7094238_SNP [dm3] 3L_7101138_SNP [dm6]	G	A	3.787e^-4	0.918	INTRON form3
3R	19927809	3R_19927809_SNP [dm3] 3R_24102087_SNP [dm6]	G	T	3.788e^-4	0.918	INTRON 4EHP & 1 other
X	3360052	X_3360052_SNP [dm3] X_3466019_SNP [dm6]	T	A	3.793e^-4	0.918	UTR_3_PRIME CG12206 INTRON CR44999
X	3528034	X_3528034_DEL [dm3] X_3634001_DEL [dm6]	AA	A	3.795e^-4	0.918	INTRON AstA-R1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	22320751	2L_22320751_SNP [dm3] 2L_22320751_SNP [dm6]	C	T	3.801e^-4	0.918	INTRON CG17018
2L	4195945	2L_4195945_SNP [dm3] 2L_4195945_SNP [dm6]	C	G	3.805e^-4	0.918	INTRON CG3714
3L	13708246	3L_13708246_SNP [dm3] 3L_13715146_SNP [dm6]	A	C	3.806e^-4	0.918	INTRON bru-3
3L	19422148	3L_19422148_SNP [dm3] 3L_19429048_SNP [dm6]	C	T	3.810e^-4	0.918	INTERGENIC
2L	11487080	2L_11487080_SNP [dm3] 2L_11487080_SNP [dm6]	C	T	3.815e^-4	0.918	DOWNSTREAM sala & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7392650	2L_7392650_SNP [dm3] 2L_7392650_SNP [dm6]	G	T	3.828e^-4	0.918	INTRON CG5160
3L	759450	3L_759450_SNP [dm3] 3L_759450_SNP [dm6]	G	A	3.828e^-4	0.918	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	12047513	3L_12047513_SNP [dm3] 3L_12054413_SNP [dm6]	G	T	3.830e^-4	0.918	INTRON rols
3L	15533330	3L_15533330_SNP [dm3] 3L_15540230_SNP [dm6]	A	T	3.830e^-4	0.918	INTRON CrebA
X	3658764	X_3658764_INS [dm3] X_3764731_INS [dm6]	T	TATGCAAACACGAAT...	3.845e^-4	0.918	INTRON tlk
X	6745647	X_6745647_INS [dm3] X_6851614_INS [dm6]	T	TT	3.847e^-4	0.918	UTR_3_PRIME CG4558 DOWNSTREAM CG14434
2R	16935048	2R_16935048_SNP [dm3] 2R_21047543_SNP [dm6]	C	T	3.855e^-4	0.918	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	10318633	2L_10318633_SNP [dm3] 2L_10318633_SNP [dm6]	G	A	3.856e^-4	0.918	SYNONYMOUS_CODING CG5381	TF binding site mE1_TFBS_sens
2R	10182559	2R_10182559_SNP [dm3] 2R_14295054_SNP [dm6]	A	T	3.857e^-4	0.918	UTR_3_PRIME Ih INTRON Ih
2L	18631565	2L_18631565_SNP [dm3] 2L_18631565_SNP [dm6]	A	C	3.859e^-4	0.918	INTRON MESR3
3L	1841812	3L_1841812_SNP [dm3] 3L_1841812_SNP [dm6]	G	A	3.873e^-4	0.918	SYNONYMOUS_CODING Cpr62Bc
2L	2649409	2L_2649409_SNP [dm3] 2L_2649409_SNP [dm6]	T	C	3.882e^-4	0.918	SYNONYMOUS_CODING CG33125 UTR_3_PRIME CG33125
3L	7648401	3L_7648401_SNP [dm3] 3L_7655301_SNP [dm6]	A	G	3.884e^-4	0.918	UPSTREAM CG7492 DOWNSTREAM Ank2 INTRON CG32373	TF binding site BDTNP1_TFBS_dl
3L	15621195	3L_15621195_SNP [dm3] 3L_15628095_SNP [dm6]	G	A	3.886e^-4	0.918	INTRON comm3
3L	754106	3L_754106_SNP [dm3] 3L_754106_SNP [dm6]	C	T	3.889e^-4	0.918	DOWNSTREAM emc INTRON hng3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	25201273	3R_25201273_SNP [dm3] 3R_29375551_SNP [dm6]	C	T	3.900e^-4	0.918	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	9620920	3L_9620920_SNP [dm3] 3L_9627820_SNP [dm6]	C	T	3.907e^-4	0.918	SYNONYMOUS_CODING Or67b UPSTREAM CG8336 DOWNSTREAM CG3335
2L	11487383	2L_11487383_SNP [dm3] 2L_11487383_SNP [dm6]	T	C	3.919e^-4	0.918	DOWNSTREAM sala & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	6679347	X_6679347_SNP [dm3] X_6785314_SNP [dm6]	C	A	3.923e^-4	0.918	INTRON C3G	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	12437483	2L_12437483_SNP [dm3] 2L_12437483_SNP [dm6]	T	C	3.929e^-4	0.918	INTRON Elf
2L	8986843	2L_8986843_SNP [dm3] 2L_8986843_SNP [dm6]	C	T	3.932e^-4	0.918	INTRON rost
3R	9942695	3R_9942695_SNP [dm3] 3R_14116973_SNP [dm6]	C	T	3.932e^-4	0.918	INTRON Kif19A
3R	25303958	3R_25303958_SNP [dm3] 3R_29478236_SNP [dm6]	A	C	3.936e^-4	0.918	INTRON Ptp99A
X	2709477	X_2709477_SNP [dm3] X_2815444_SNP [dm6]	T	G	3.939e^-4	0.918	INTRON kirre
2R	10182276	2R_10182276_SNP [dm3] 2R_14294771_SNP [dm6]	A	G	3.945e^-4	0.918	UTR_3_PRIME Ih INTRON Ih
3L	11117703	3L_11117703_SNP [dm3] 3L_11124603_SNP [dm6]	C	T	3.953e^-4	0.918	INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	18505276	3R_18505276_SNP [dm3] 3R_22679554_SNP [dm6]	C	T	3.960e^-4	0.918	SYNONYMOUS_CODING CG45058	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12597261	2L_12597261_SNP [dm3] 2L_12597261_SNP [dm6]	T	G	3.962e^-4	0.918	INTRON nub
3L	387406	3L_387406_SNP [dm3] 3L_387406_SNP [dm6]	T	A	3.963e^-4	0.918	INTRON trh
3L	387409	3L_387409_INS [dm3] 3L_387409_INS [dm6]	T	TT	3.963e^-4	0.918	INTRON trh
3L	387434	3L_387434_SNP [dm3] 3L_387434_SNP [dm6]	A	G	3.963e^-4	0.918	INTRON trh
3L	17939094	3L_17939094_SNP [dm3] 3L_17945994_SNP [dm6]	G	C	3.964e^-4	0.918	UTR_3_PRIME CG43174
2L	12957364	2L_12957364_SNP [dm3] 2L_12957364_SNP [dm6]	C	T	3.967e^-4	0.918	INTERGENIC
3L	1833001	3L_1833001_SNP [dm3] 3L_1833001_SNP [dm6]	G	A	3.972e^-4	0.918	INTRON Cpr62Bb
3R	7166194	3R_7166194_SNP [dm3] 3R_11340472_SNP [dm6]	A	G	3.981e^-4	0.918	INTRON pros	TF binding site BDTNP1_TFBS_dl
3L	2353118	3L_2353118_SNP [dm3] 3L_2353118_SNP [dm6]	T	A	3.988e^-4	0.918	INTERGENIC
X	3360040	X_3360040_SNP [dm3] X_3466007_SNP [dm6]	C	A	3.989e^-4	0.918	UTR_3_PRIME CG12206 INTRON CR44999
2L	9175083	2L_9175083_SNP [dm3] 2L_9175083_SNP [dm6]	T	C	3.991e^-4	0.918	INTRON tai
3R	23517969	3R_23517969_SNP [dm3] 3R_27692247_SNP [dm6]	C	A	3.993e^-4	0.918	UTR_3_PRIME CG12880	TF binding site mE1_TFBS_chinmo
3R	26982574	3R_26982574_SNP [dm3] 3R_31156852_SNP [dm6]	C	G	4.003e^-4	0.918	INTRON Gycbeta100B
2L	5466268	2L_5466268_SNP [dm3] 2L_5466268_SNP [dm6]	C	T	4.007e^-4	0.918	SYNONYMOUS_CODING mid	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16823477	3L_16823477_SNP [dm3] 3L_16830377_SNP [dm6]	C	G	4.015e^-4	0.918	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	4937211	X_4937211_SNP [dm3] X_5043178_SNP [dm6]	C	A	4.017e^-4	0.918	INTRON CR44833	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6735945	2L_6735945_SNP [dm3] 2L_6735945_SNP [dm6]	T	A	4.033e^-4	0.918	DOWNSTREAM TTLL3A INTRON TTLL3B
3R	21777474	3R_21777474_SNP [dm3] 3R_25951752_SNP [dm6]	A	C	4.037e^-4	0.918	INTRON CCAP-R
2L	12149947	2L_12149947_SNP [dm3] 2L_12149947_SNP [dm6]	G	A	4.065e^-4	0.918	INTRON CG31760
3R	17211173	3R_17211173_SNP [dm3] 3R_21385451_SNP [dm6]	A	T	4.066e^-4	0.918	INTERGENIC	regulatory region REDfly_CRMs
3R	21612474	3R_21612474_SNP [dm3] 3R_25786752_SNP [dm6]	C	T	4.090e^-4	0.918	SYNONYMOUS_CODING CG4960
3R	17543867	3R_17543867_INS [dm3] 3R_21718145_INS [dm6]	C	CCTCCTAAC	4.098e^-4	0.918	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
X	4937227	X_4937227_SNP [dm3] X_5043194_SNP [dm6]	A	G	4.112e^-4	0.918	INTRON CR44833	TF binding site BDTNP1_TFBS_dl
2L	7559438	2L_7559438_INS [dm3] 2L_7559438_INS [dm6]	T	TGCACAT	4.124e^-4	0.918	INTRON RapGAP1
3R	14309545	3R_14309545_SNP [dm3] 3R_18483823_SNP [dm6]	C	T	4.124e^-4	0.918	INTRON fru
3R	14309560	3R_14309560_SNP [dm3] 3R_18483838_SNP [dm6]	G	T	4.124e^-4	0.918	INTRON fru
X	20433516	X_20433516_INS [dm3] X_20562489_INS [dm6]	A	AA	4.132e^-4	0.918	INTRON RunxB
3L	1076908	3L_1076908_SNP [dm3] 3L_1076908_SNP [dm6]	T	G	4.133e^-4	0.918	INTRON bab1
2R	10314300	2R_10314300_SNP [dm3] 2R_14426795_SNP [dm6]	A	G	4.138e^-4	0.918	DOWNSTREAM phyl INTERGENIC
X	6890053	X_6890053_SNP [dm3] X_6996020_SNP [dm6]	C	T	4.164e^-4	0.918	INTRON Inx7 EXON CR43837	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12465471	3L_12465471_SNP [dm3] 3L_12472371_SNP [dm6]	G	T	4.174e^-4	0.918	INTRON CG10616	TF binding site mE1_TFBS_cad
2R	10313298	2R_10313298_SNP [dm3] 2R_14425793_SNP [dm6]	A	T	4.179e^-4	0.918	INTERGENIC
X	12432824	X_12432824_SNP [dm3] X_12538791_SNP [dm6]	T	A	4.182e^-4	0.918	INTRON CG43921
2R	767639	2R_767639_SNP [dm3] 2R_4880134_SNP [dm6]	T	A	4.189e^-4	0.918	INTERGENIC	transposable element FlyBase
X	3659062	X_3659062_DEL [dm3] X_3765029_DEL [dm6]	TTACCGCCAGTTACCGT...	T	4.191e^-4	0.918	INTRON tlk
X	12162895	X_12162895_SNP [dm3] X_12268862_SNP [dm6]	T	C	4.199e^-4	0.918	INTRON Ten-a
3R	7941012	3R_7941012_SNP [dm3] 3R_12115290_SNP [dm6]	A	G	4.203e^-4	0.918	INTERGENIC
3R	7941219	3R_7941219_SNP [dm3] 3R_12115497_SNP [dm6]	C	T	4.203e^-4	0.918	INTERGENIC
3R	25201620	3R_25201620_SNP [dm3] 3R_29375898_SNP [dm6]	G	T	4.211e^-4	0.918	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3L	19269731	3L_19269731_SNP [dm3] 3L_19276631_SNP [dm6]	C	T	4.212e^-4	0.918	SYNONYMOUS_CODING CG14086
3R	7952905	3R_7952905_SNP [dm3] 3R_12127183_SNP [dm6]	G	T	4.214e^-4	0.918	INTRON CG4702
2R	20425599	2R_20425599_SNP [dm3] 2R_24538076_SNP [dm6]	A	G	4.228e^-4	0.918	INTRON CG4622 & 1 other
2R	11168109	2R_11168109_SNP [dm3] 2R_15280604_SNP [dm6]	C	T	4.229e^-4	0.918	INTRON Trpm
3R	19200966	3R_19200966_INS [dm3] 3R_23375244_INS [dm6]	T	TAAT	4.240e^-4	0.918	DOWNSTREAM CG42828 & 1 other INTERGENIC
3R	19200969	3R_19200969_SNP [dm3] 3R_23375247_SNP [dm6]	T	A	4.240e^-4	0.918	DOWNSTREAM CG4393 INTERGENIC
X	6679242	X_6679242_SNP [dm3] X_6785209_SNP [dm6]	A	T	4.250e^-4	0.918	INTRON C3G	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	6679243	X_6679243_SNP [dm3] X_6785210_SNP [dm6]	T	A	4.250e^-4	0.918	INTRON C3G	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	6679245	X_6679245_SNP [dm3] X_6785212_SNP [dm6]	A	T	4.250e^-4	0.918	INTRON C3G	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	6679267	X_6679267_SNP [dm3] X_6785234_SNP [dm6]	T	A	4.250e^-4	0.918	INTRON C3G	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	6679282	X_6679282_SNP [dm3] X_6785249_SNP [dm6]	T	C	4.250e^-4	0.918	INTRON C3G	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	13552211	3L_13552211_SNP [dm3] 3L_13559111_SNP [dm6]	G	A	4.275e^-4	0.918	INTRON bru-3
3R	25277606	3R_25277606_SNP [dm3] 3R_29451884_SNP [dm6]	T	A	4.276e^-4	0.918	INTRON Ptp99A
X	9908257	X_9908257_SNP [dm3] X_10014224_SNP [dm6]	C	G	4.284e^-4	0.918	UTR_3_PRIME CG2990
X	9908260	X_9908260_SNP [dm3] X_10014227_SNP [dm6]	A	T	4.284e^-4	0.918	UTR_3_PRIME CG2990
X	9908266	X_9908266_SNP [dm3] X_10014233_SNP [dm6]	C	T	4.284e^-4	0.918	UTR_3_PRIME CG2990
X	3658166	X_3658166_SNP [dm3] X_3764133_SNP [dm6]	C	T	4.295e^-4	0.918	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3659328	X_3659328_SNP [dm3] X_3765295_SNP [dm6]	A	G	4.295e^-4	0.918	INTRON tlk
X	3660544	X_3660544_SNP [dm3] X_3766511_SNP [dm6]	T	C	4.295e^-4	0.918	INTRON tlk
X	3661658	X_3661658_SNP [dm3] X_3767625_SNP [dm6]	T	A	4.295e^-4	0.918	INTRON tlk
X	3662409	X_3662409_DEL [dm3] X_3768376_DEL [dm6]	ATAATGAATGA...	A	4.295e^-4	0.918	INTRON tlk
X	3662509	X_3662509_SNP [dm3] X_3768476_SNP [dm6]	T	C	4.295e^-4	0.918	INTRON tlk
2L	12957325	2L_12957325_SNP [dm3] 2L_12957325_SNP [dm6]	A	C	4.309e^-4	0.918	INTERGENIC
X	5245182	X_5245182_SNP [dm3] X_5351149_SNP [dm6]	C	T	4.371e^-4	0.918	INTRON SK
X	3701431	X_3701431_SNP [dm3] X_3807398_SNP [dm6]	A	G	4.382e^-4	0.918	INTRON fd3F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	6646144	2R_6646144_SNP [dm3] 2R_10758639_SNP [dm6]	G	T	4.387e^-4	0.918	INTRON CG33144
3R	19957898	3R_19957898_SNP [dm3] 3R_24132176_SNP [dm6]	A	G	4.398e^-4	0.918	NON_SYNONYMOUS_CODING Tsc1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	12154718	X_12154718_SNP [dm3] X_12260685_SNP [dm6]	G	A	4.401e^-4	0.918	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	18842214	X_18842214_SNP [dm3] X_18948181_SNP [dm6]	G	A	4.404e^-4	0.918	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	12596720	2L_12596720_SNP [dm3] 2L_12596720_SNP [dm6]	G	A	4.416e^-4	0.918	INTRON nub
2L	4010451	2L_4010451_SNP [dm3] 2L_4010451_SNP [dm6]	T	C	4.418e^-4	0.918	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	11256808	X_11256808_SNP [dm3] X_11362775_SNP [dm6]	G	C	4.445e^-4	0.918	INTRON hop
2R	17443777	2R_17443777_SNP [dm3] 2R_21556272_SNP [dm6]	C	G	4.459e^-4	0.918	SYNONYMOUS_CODING Egfr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	19373322	3L_19373322_SNP [dm3] 3L_19380222_SNP [dm6]	T	G	4.466e^-4	0.918	INTRON CG32206	TF binding site BDTNP1_TFBS_twi
3R	10380392	3R_10380392_SNP [dm3] 3R_14554670_SNP [dm6]	A	T	4.469e^-4	0.918	INTRON Pde6
2L	20987601	2L_20987601_SNP [dm3] 2L_20987601_SNP [dm6]	T	A	4.475e^-4	0.918	INTRON CG42238
2L	20987602	2L_20987602_SNP [dm3] 2L_20987602_SNP [dm6]	G	T	4.475e^-4	0.918	INTRON CG42238
3L	16200742	3L_16200742_SNP [dm3] 3L_16207642_SNP [dm6]	A	G	4.483e^-4	0.918	INTERGENIC
2R	8127580	2R_8127580_DEL [dm3] 2R_12240075_DEL [dm6]	AAA	G	4.485e^-4	0.918	UPSTREAM CG13170 INTERGENIC
2R	8127606	2R_8127606_SNP [dm3] 2R_12240101_SNP [dm6]	T	C	4.485e^-4	0.918	UPSTREAM CG13170 INTERGENIC
3L	14330073	3L_14330073_SNP [dm3] 3L_14336973_SNP [dm6]	T	C	4.498e^-4	0.918	INTRON fz	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16571216	3R_16571216_SNP [dm3] 3R_20745494_SNP [dm6]	T	C	4.504e^-4	0.918	UPSTREAM CG31200 INTRON CG42322
2R	17623961	2R_17623961_SNP [dm3] 2R_21736456_SNP [dm6]	T	A	4.510e^-4	0.918	INTERGENIC
3L	12047516	3L_12047516_SNP [dm3] 3L_12054416_SNP [dm6]	A	G	4.511e^-4	0.918	INTRON rols
2R	17751103	2R_17751103_SNP [dm3] 2R_21863598_SNP [dm6]	C	A	4.529e^-4	0.918	INTERGENIC
2R	8127443	2R_8127443_SNP [dm3] 2R_12239938_SNP [dm6]	A	T	4.531e^-4	0.918	UPSTREAM CG13170 INTERGENIC
2R	7793311	2R_7793311_SNP [dm3] 2R_11905806_SNP [dm6]	G	A	4.545e^-4	0.918	SYNONYMOUS_CODING CG13183
X	18391659	X_18391659_SNP [dm3] X_18497626_SNP [dm6]	T	C	4.548e^-4	0.918	INTRON GalNAc-T2
X	20808076	X_20808076_SNP [dm3] X_20937049_SNP [dm6]	C	T	4.552e^-4	0.918	SYNONYMOUS_CODING Npc1b	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	22831478	3L_22831478_SNP [dm3] 3L_22838378_SNP [dm6]	T	C	4.563e^-4	0.918	DOWNSTREAM CG11226 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22831739	3L_22831739_DEL [dm3] 3L_22838639_DEL [dm6]	TTTGTGCCGGCCCGCTCCCT...	T	4.563e^-4	0.918	DOWNSTREAM CG11226 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9606409	3L_9606409_SNP [dm3] 3L_9613309_SNP [dm6]	G	A	4.567e^-4	0.918	SYNONYMOUS_CODING CG3280	TF binding site mE1_TFBS_chinmo
2R	17724457	2R_17724457_SNP [dm3] 2R_21836952_SNP [dm6]	T	A	4.572e^-4	0.918	UPSTREAM CG4377 DOWNSTREAM CG4372 INTERGENIC
3L	12548226	3L_12548226_SNP [dm3] 3L_12555126_SNP [dm6]	A	T	4.581e^-4	0.918	INTRON sowah
3R	9946305	3R_9946305_SNP [dm3] 3R_14120583_SNP [dm6]	A	C	4.582e^-4	0.918	INTRON Abi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25050431	3R_25050431_SNP [dm3] 3R_29224709_SNP [dm6]	G	A	4.598e^-4	0.918	SYNONYMOUS_CODING Brd8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26415365	3R_26415365_SNP [dm3] 3R_30589643_SNP [dm6]	C	A	4.603e^-4	0.918	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	794215	2R_794215_SNP [dm3] 2R_4906710_SNP [dm6]	C	A	4.608e^-4	0.918	INTRON CG44102	transposable element FlyBase
X	17720038	X_17720038_SNP [dm3] X_17826005_SNP [dm6]	T	A	4.618e^-4	0.918	INTRON Socs16D
3L	6110895	3L_6110895_SNP [dm3] 3L_6117795_SNP [dm6]	A	C	4.630e^-4	0.918	INTRON Ets65A
3L	3493210	3L_3493210_SNP [dm3] 3L_3493210_SNP [dm6]	A	T	4.631e^-4	0.918	INTRON CG42324	TF binding site mE1_TFBS_sbb
X	14573408	X_14573408_SNP [dm3] X_14679375_SNP [dm6]	A	T	4.633e^-4	0.918	UPSTREAM CG5321 INTERGENIC
X	14573409	X_14573409_SNP [dm3] X_14679376_SNP [dm6]	T	C	4.633e^-4	0.918	UPSTREAM CG5321 INTERGENIC
X	14573412	X_14573412_SNP [dm3] X_14679379_SNP [dm6]	A	C	4.633e^-4	0.918	UPSTREAM CG5321 INTERGENIC
X	14573434	X_14573434_SNP [dm3] X_14679401_SNP [dm6]	A	C	4.633e^-4	0.918	UPSTREAM CG5321 INTERGENIC
X	14573435	X_14573435_SNP [dm3] X_14679402_SNP [dm6]	A	G	4.633e^-4	0.918	UPSTREAM CG5321 INTERGENIC
X	14573437	X_14573437_SNP [dm3] X_14679404_SNP [dm6]	A	G	4.633e^-4	0.918	UPSTREAM CG5321 INTERGENIC
X	14573440	X_14573440_INS [dm3] X_14679407_INS [dm6]	T	TTCT	4.633e^-4	0.918	UPSTREAM CG5321 INTERGENIC
X	14573443	X_14573443_SNP [dm3] X_14679410_SNP [dm6]	A	T	4.633e^-4	0.918	UPSTREAM CG5321 INTERGENIC
X	14573444	X_14573444_SNP [dm3] X_14679411_SNP [dm6]	A	T	4.633e^-4	0.918	UPSTREAM CG5321 INTERGENIC
X	20808118	X_20808118_SNP [dm3] X_20937091_SNP [dm6]	G	C	4.639e^-4	0.918	SYNONYMOUS_CODING Npc1b	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	20006216	2R_20006216_SNP [dm3] 2R_24118693_SNP [dm6]	T	C	4.641e^-4	0.918	INTRON CG3257	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	20006260	2R_20006260_SNP [dm3] 2R_24118737_SNP [dm6]	C	T	4.641e^-4	0.918	INTRON CG3257	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	12129240	3L_12129240_SNP [dm3] 3L_12136140_SNP [dm6]	C	A	4.649e^-4	0.918	NON_SYNONYMOUS_CODING CG5645 UPSTREAM Atg12	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	16690130	2R_16690130_SNP [dm3] 2R_20802625_SNP [dm6]	A	C	4.656e^-4	0.918	INTERGENIC
X	7767265	X_7767265_SNP [dm3] X_7873232_SNP [dm6]	C	A	4.656e^-4	0.918	UPSTREAM dec-1 EXON CR43615	TF binding site mE1_TFBS_chinmo
X	20608962	X_20608962_SNP [dm3] X_20737935_SNP [dm6]	A	G	4.692e^-4	0.918	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10713914	2R_10713914_SNP [dm3] 2R_14826409_SNP [dm6]	C	T	4.698e^-4	0.918	INTERGENIC
X	14252433	X_14252433_DEL [dm3] X_14358400_DEL [dm6]	CACAGC	C	4.718e^-4	0.918	INTRON dpr8
X	14252550	X_14252550_SNP [dm3] X_14358517_SNP [dm6]	T	C	4.718e^-4	0.918	INTRON dpr8
X	18838735	X_18838735_INS [dm3] X_18944702_INS [dm6]	T	TG	4.740e^-4	0.918	INTRON CG43759
2R	20518051	2R_20518051_SNP [dm3] 2R_24630528_SNP [dm6]	C	T	4.743e^-4	0.918	UPSTREAM Cyp9c1 DOWNSTREAM CR43787 INTRON CG13594
3L	8447678	3L_8447678_SNP [dm3] 3L_8454578_SNP [dm6]	C	T	4.747e^-4	0.918	INTRON Gug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	20790298	X_20790298_SNP [dm3] X_20919271_SNP [dm6]	T	A	4.752e^-4	0.918	INTRON shakB
2R	1913157	2R_1913157_DEL [dm3] 2R_6025652_DEL [dm6]	CTATCC	C	4.760e^-4	0.918	DOWNSTREAM SCAP INTERGENIC
3L	19387460	3L_19387460_DEL [dm3] 3L_19394360_DEL [dm6]	TT	T	4.762e^-4	0.918	INTRON CG32206
X	10716102	X_10716102_SNP [dm3] X_10822069_SNP [dm6]	A	G	4.766e^-4	0.918	UPSTREAM Imp INTRON Imp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
X	10716136	X_10716136_SNP [dm3] X_10822103_SNP [dm6]	A	G	4.766e^-4	0.918	UPSTREAM Imp INTRON Imp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
2R	12873823	2R_12873823_SNP [dm3] 2R_16986318_SNP [dm6]	C	A	4.768e^-4	0.918	INTRON Cbp53E
2R	12873828	2R_12873828_SNP [dm3] 2R_16986323_SNP [dm6]	A	G	4.768e^-4	0.918	INTRON Cbp53E
3R	25303894	3R_25303894_SNP [dm3] 3R_29478172_SNP [dm6]	A	G	4.769e^-4	0.918	INTRON Ptp99A
X	16082452	X_16082452_SNP [dm3] X_16188419_SNP [dm6]	G	A	4.782e^-4	0.918	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	6258398	2R_6258398_SNP [dm3] 2R_10370893_SNP [dm6]	A	C	4.804e^-4	0.918	INTRON CG42732
3L	2771589	3L_2771589_SNP [dm3] 3L_2771589_SNP [dm6]	G	A	4.805e^-4	0.918	SYNONYMOUS_CODING CG9977 DOWNSTREAM CG12093	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2R	17485683	2R_17485683_SNP [dm3] 2R_21598178_SNP [dm6]	C	G	4.813e^-4	0.918	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19833852	2R_19833852_SNP [dm3] 2R_23946329_SNP [dm6]	T	G	4.816e^-4	0.918	DOWNSTREAM CG13565 INTRON Galphas
3L	761229	3L_761229_SNP [dm3] 3L_761229_SNP [dm6]	A	T	4.822e^-4	0.918	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	761560	3L_761560_SNP [dm3] 3L_761560_SNP [dm6]	A	T	4.822e^-4	0.918	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med
3L	11595984	3L_11595984_SNP [dm3] 3L_11602884_SNP [dm6]	A	C	4.834e^-4	0.918	SYNONYMOUS_CODING CG7368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	23990777	3R_23990777_SNP [dm3] 3R_28165055_SNP [dm6]	C	A	4.834e^-4	0.918	INTRON CG34354
2R	19178562	2R_19178562_SNP [dm3] 2R_23291039_SNP [dm6]	C	T	4.835e^-4	0.918	EXON CR44783
3L	19179121	3L_19179121_SNP [dm3] 3L_19186021_SNP [dm6]	T	G	4.867e^-4	0.918	INTRON fz2
3L	19179127	3L_19179127_SNP [dm3] 3L_19186027_SNP [dm6]	C	T	4.867e^-4	0.918	INTRON fz2
3L	8488506	3L_8488506_SNP [dm3] 3L_8495406_SNP [dm6]	A	G	4.893e^-4	0.918	INTRON CG43163
2R	11974156	2R_11974156_DEL [dm3] 2R_16086651_DEL [dm6]	TTTTGT	T	4.902e^-4	0.918	INTRON Dg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9343232	2L_9343232_SNP [dm3] 2L_9343232_SNP [dm6]	G	C	4.903e^-4	0.918	NON_SYNONYMOUS_CODING CG3748
3L	18944880	3L_18944880_SNP [dm3] 3L_18951780_SNP [dm6]	C	T	4.906e^-4	0.918	INTRON CG6836
2R	13309776	2R_13309776_SNP [dm3] 2R_17422271_SNP [dm6]	T	C	4.907e^-4	0.918	INTRON l_2_k01209	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12568705	2L_12568705_SNP [dm3] 2L_12568705_SNP [dm6]	G	A	4.911e^-4	0.918	INTERGENIC
3L	13244982	3L_13244982_SNP [dm3] 3L_13251882_SNP [dm6]	A	C	4.912e^-4	0.918	INTRON caps
3R	11078482	3R_11078482_SNP [dm3] 3R_15252760_SNP [dm6]	C	T	4.912e^-4	0.918	SYNONYMOUS_CODING CG42404 UTR_3_PRIME CG42404	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19720497	2L_19720497_SNP [dm3] 2L_19720497_SNP [dm6]	G	A	4.915e^-4	0.918	INTRON Lar
2R	8550593	2R_8550593_SNP [dm3] 2R_12663088_SNP [dm6]	C	G	4.919e^-4	0.918	UPSTREAM nemy INTRON nemy	TF binding site mE1_TFBS_cad
3L	18921375	3L_18921375_SNP [dm3] 3L_18928275_SNP [dm6]	A	G	4.936e^-4	0.918	INTRON CG32204	TF binding site mE1_TFBS_run
2L	2306333	2L_2306333_SNP [dm3] 2L_2306333_SNP [dm6]	C	T	4.939e^-4	0.918	INTERGENIC
2L	2306486	2L_2306486_SNP [dm3] 2L_2306486_SNP [dm6]	T	A	4.939e^-4	0.918	INTERGENIC
2L	2306513	2L_2306513_SNP [dm3] 2L_2306513_SNP [dm6]	A	C	4.939e^-4	0.918	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	6043445	2R_6043445_SNP [dm3] 2R_10155940_SNP [dm6]	A	T	4.940e^-4	0.918	UTR_3_PRIME mlt DOWNSTREAM mlt INTRON KCNQ
2R	7637125	2R_7637125_SNP [dm3] 2R_11749620_SNP [dm6]	T	C	4.960e^-4	0.918	INTERGENIC
2L	15796903	2L_15796903_DEL [dm3] 2L_15796903_DEL [dm6]	TCTTA	T	4.969e^-4	0.918	INTERGENIC
3L	16467971	3L_16467971_SNP [dm3] 3L_16474871_SNP [dm6]	A	T	4.997e^-4	0.918	INTRON CG33158 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_inv mE1_TFBS_sens
2L	22172340	2L_22172340_INS [dm3] 2L_22172340_INS [dm6]	C	CCTTATTCATTAACGAGCTC...	5.009e^-4	0.918	INTERGENIC	transposable element FlyBase
3L	2345460	3L_2345460_SNP [dm3] 3L_2345460_SNP [dm6]	A	C	5.014e^-4	0.918	UTR_3_PRIME MsR1
3L	15609133	3L_15609133_SNP [dm3] 3L_15616033_SNP [dm6]	A	C	5.015e^-4	0.918	INTRON comm3
3L	11050564	3L_11050564_SNP [dm3] 3L_11057464_SNP [dm6]	A	G	5.020e^-4	0.918	INTRON CG7888
3L	12128964	3L_12128964_SNP [dm3] 3L_12135864_SNP [dm6]	C	T	5.022e^-4	0.918	SYNONYMOUS_CODING CG5645	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	12129837	3L_12129837_SNP [dm3] 3L_12136737_SNP [dm6]	A	T	5.022e^-4	0.918	UPSTREAM Atg12 & 1 other DOWNSTREAM l_3_neo18 INTERGENIC	TF binding site mE1_TFBS_cad
3L	12130109	3L_12130109_SNP [dm3] 3L_12137009_SNP [dm6]	C	A	5.022e^-4	0.918	UTR_5_PRIME Atg12 UPSTREAM CG5645 DOWNSTREAM l_3_neo18
3L	12130243	3L_12130243_DEL [dm3] 3L_12137143_DEL [dm6]	CTT	C	5.022e^-4	0.918	UPSTREAM CG5645 DOWNSTREAM l_3_neo18 INTRON Atg12
X	14630345	X_14630345_SNP [dm3] X_14736312_SNP [dm6]	A	G	5.023e^-4	0.918	INTRON NetB
X	12201906	X_12201906_SNP [dm3] X_12307873_SNP [dm6]	G	A	5.024e^-4	0.918	INTRON Ten-a
3L	2966623	3L_2966623_SNP [dm3] 3L_2966623_SNP [dm6]	G	A	5.027e^-4	0.918	INTERGENIC
2L	2306682	2L_2306682_SNP [dm3] 2L_2306682_SNP [dm6]	A	G	5.032e^-4	0.918	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5865800	X_5865800_SNP [dm3] X_5971767_SNP [dm6]	T	A	5.035e^-4	0.918	INTRON Grip
X	5865804	X_5865804_SNP [dm3] X_5971771_SNP [dm6]	G	T	5.035e^-4	0.918	INTRON Grip
X	5865838	X_5865838_SNP [dm3] X_5971805_SNP [dm6]	T	A	5.035e^-4	0.918	INTRON Grip
3L	770362	3L_770362_SNP [dm3] 3L_770362_SNP [dm6]	T	C	5.043e^-4	0.918	UPSTREAM tRNA:CR32481 DOWNSTREAM tRNA:CR32480 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	10860319	X_10860319_SNP [dm3] X_10966286_SNP [dm6]	G	A	5.059e^-4	0.918	SYNONYMOUS_CODING C901
3R	24493028	3R_24493028_SNP [dm3] 3R_28667306_SNP [dm6]	A	C	5.074e^-4	0.918	INTERGENIC
3L	22021397	3L_22021397_SNP [dm3] 3L_22028297_SNP [dm6]	A	C	5.075e^-4	0.918	UTR_5_PRIME CG7140
2L	6717648	2L_6717648_SNP [dm3] 2L_6717648_SNP [dm6]	G	T	5.092e^-4	0.918	UTR_5_PRIME Aatf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	7402346	2R_7402346_SNP [dm3] 2R_11514841_SNP [dm6]	T	G	5.097e^-4	0.918	INTERGENIC
3L	9322764	3L_9322764_SNP [dm3] 3L_9329664_SNP [dm6]	T	G	5.100e^-4	0.918	INTERGENIC
3L	13736074	3L_13736074_SNP [dm3] 3L_13742974_SNP [dm6]	C	T	5.101e^-4	0.918	INTRON bru-3
3R	14600799	3R_14600799_SNP [dm3] 3R_18775077_SNP [dm6]	A	C	5.103e^-4	0.918	INTRON CG7720
X	11769412	X_11769412_SNP [dm3] X_11875379_SNP [dm6]	A	G	5.108e^-4	0.918	UTR_3_PRIME CG10352 DOWNSTREAM CG15739
X	11769422	X_11769422_SNP [dm3] X_11875389_SNP [dm6]	G	A	5.108e^-4	0.918	UTR_3_PRIME CG10352 DOWNSTREAM CG15739
2R	750504	2R_750504_SNP [dm3] 2R_4862999_SNP [dm6]	A	T	5.110e^-4	0.918	INTERGENIC	transposable element FlyBase
X	20808616	X_20808616_SNP [dm3] X_20937589_SNP [dm6]	T	C	5.113e^-4	0.918	SYNONYMOUS_CODING Npc1b	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	17689456	3R_17689456_SNP [dm3] 3R_21863734_SNP [dm6]	A	T	5.117e^-4	0.918	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9398036	2R_9398036_SNP [dm3] 2R_13510531_SNP [dm6]	C	A	5.131e^-4	0.918	SYNONYMOUS_CODING mip120	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	24628572	3R_24628572_SNP [dm3] 3R_28802850_SNP [dm6]	T	A	5.146e^-4	0.918	INTERGENIC
3L	14930194	3L_14930194_SNP [dm3] 3L_14937094_SNP [dm6]	A	T	5.156e^-4	0.918	INTRON DCX-EMAP
2R	7795137	2R_7795137_SNP [dm3] 2R_11907632_SNP [dm6]	G	A	5.159e^-4	0.918	INTRON CG13183
2R	12816583	2R_12816583_SNP [dm3] 2R_16929078_SNP [dm6]	G	A	5.181e^-4	0.918	INTRON Pkc53E
3L	16471426	3L_16471426_SNP [dm3] 3L_16478326_SNP [dm6]	G	A	5.195e^-4	0.918	INTRON CG33158 & 1 other	TF binding site mE1_TFBS_HSA
3L	3201827	3L_3201827_SNP [dm3] 3L_3201827_SNP [dm6]	G	A	5.199e^-4	0.918	SYNONYMOUS_CODING gry DOWNSTREAM CG32271
3R	24093328	3R_24093328_SNP [dm3] 3R_28267606_SNP [dm6]	A	G	5.202e^-4	0.918	INTERGENIC
X	9908178	X_9908178_SNP [dm3] X_10014145_SNP [dm6]	A	T	5.203e^-4	0.918	UTR_3_PRIME CG2990
3L	11116816	3L_11116816_INS [dm3] 3L_11123716_INS [dm6]	T	TT	5.208e^-4	0.918	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11116847	3L_11116847_SNP [dm3] 3L_11123747_SNP [dm6]	A	G	5.208e^-4	0.918	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11116849	3L_11116849_SNP [dm3] 3L_11123749_SNP [dm6]	G	A	5.208e^-4	0.918	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	15467631	2L_15467631_SNP [dm3] 2L_15467631_SNP [dm6]	C	T	5.210e^-4	0.918	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19705604	2R_19705604_SNP [dm3] 2R_23818081_SNP [dm6]	G	A	5.227e^-4	0.918	UTR_5_PRIME CG4797
2R	10313333	2R_10313333_SNP [dm3] 2R_14425828_SNP [dm6]	C	T	5.228e^-4	0.918	INTERGENIC
3L	18765037	3L_18765037_SNP [dm3] 3L_18771937_SNP [dm6]	T	G	5.228e^-4	0.918	INTRON ftz-f1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	3663607	X_3663607_SNP [dm3] X_3769574_SNP [dm6]	C	G	5.236e^-4	0.918	INTRON tlk	TF binding site BDTNP1_TFBS_dl
2R	10713956	2R_10713956_SNP [dm3] 2R_14826451_SNP [dm6]	T	C	5.245e^-4	0.918	INTERGENIC
2R	10266327	2R_10266327_SNP [dm3] 2R_14378822_SNP [dm6]	C	T	5.246e^-4	0.918	INTRON Dh44-R1
2L	12437784	2L_12437784_SNP [dm3] 2L_12437784_SNP [dm6]	T	A	5.253e^-4	0.918	INTRON Elf	TF binding site mE1_TFBS_cad
3R	11662022	3R_11662022_SNP [dm3] 3R_15836300_SNP [dm6]	C	G	5.254e^-4	0.918	DOWNSTREAM Arpc3A INTRON ND23 EXON mir-4911	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	14843656	X_14843656_SNP [dm3] X_14949623_SNP [dm6]	A	T	5.255e^-4	0.918	INTRON pdgy
2L	15796919	2L_15796919_SNP [dm3] 2L_15796919_SNP [dm6]	T	A	5.257e^-4	0.918	INTERGENIC
3L	1689963	3L_1689963_INS [dm3] 3L_1689963_INS [dm6]	C	CAAGC	5.258e^-4	0.918	INTRON CG7991
2R	17284241	2R_17284241_SNP [dm3] 2R_21396736_SNP [dm6]	T	A	5.267e^-4	0.918	INTRON Sdc
2R	12873745	2R_12873745_SNP [dm3] 2R_16986240_SNP [dm6]	T	A	5.270e^-4	0.918	INTRON Cbp53E
3L	11116315	3L_11116315_SNP [dm3] 3L_11123215_SNP [dm6]	A	C	5.273e^-4	0.918	UTR_5_PRIME Ufd1-like UPSTREAM CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8833274	2R_8833274_SNP [dm3] 2R_12945769_SNP [dm6]	A	C	5.303e^-4	0.918	INTRON Mdr49	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	15360491	X_15360491_SNP [dm3] X_15466458_SNP [dm6]	C	A	5.303e^-4	0.918	SYNONYMOUS_CODING CG6299 UTR_3_PRIME CG15642 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5277512	2L_5277512_SNP [dm3] 2L_5277512_SNP [dm6]	T	C	5.313e^-4	0.918	UPSTREAM Bsg25D INTRON Bsg25D	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7991832	2L_7991832_DEL [dm3] 2L_7991832_DEL [dm6]	GAGAGAG	G	5.337e^-4	0.918	UPSTREAM pes INTRON pes	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	2570163	X_2570163_SNP [dm3] X_2676130_SNP [dm6]	T	A	5.339e^-4	0.918	UTR_3_PRIME sgg DOWNSTREAM sgg INTRON sgg EXON CR45197	TF binding site BDTNP1_TFBS_dl
2L	7638451	2L_7638451_SNP [dm3] 2L_7638451_SNP [dm6]	A	G	5.347e^-4	0.918	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	23360523	3R_23360523_SNP [dm3] 3R_27534801_SNP [dm6]	T	A	5.349e^-4	0.918	DOWNSTREAM CG12885 INTERGENIC
3R	23360530	3R_23360530_INS [dm3] 3R_27534808_INS [dm6]	C	CC	5.349e^-4	0.918	DOWNSTREAM CG12885 INTERGENIC
2R	13307767	2R_13307767_SNP [dm3] 2R_17420262_SNP [dm6]	G	C	5.355e^-4	0.918	UPSTREAM l_2_k01209 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	12565915	3L_12565915_SNP [dm3] 3L_12572815_SNP [dm6]	G	A	5.357e^-4	0.918	UPSTREAM sowah INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	4071126	2L_4071126_SNP [dm3] 2L_4071126_SNP [dm6]	A	G	5.362e^-4	0.918	INTRON ed
3R	13104852	3R_13104852_SNP [dm3] 3R_17279130_SNP [dm6]	T	C	5.372e^-4	0.918	INTERGENIC
2R	7086977	2R_7086977_SNP [dm3] 2R_11199472_SNP [dm6]	T	A	5.379e^-4	0.918	INTRON shn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl mE1_TFBS_zfh1
2R	19360653	2R_19360653_SNP [dm3] 2R_23473130_SNP [dm6]	A	G	5.384e^-4	0.918	SYNONYMOUS_CODING Or59c INTRON CG43795
2R	19360685	2R_19360685_SNP [dm3] 2R_23473162_SNP [dm6]	A	G	5.384e^-4	0.918	SYNONYMOUS_CODING Or59c INTRON CG43795
2R	19360707	2R_19360707_SNP [dm3] 2R_23473184_SNP [dm6]	A	G	5.384e^-4	0.918	SYNONYMOUS_CODING Or59c INTRON CG43795
3L	16472634	3L_16472634_SNP [dm3] 3L_16479534_SNP [dm6]	A	G	5.392e^-4	0.918	INTRON CG33158 & 1 other
3L	12148020	3L_12148020_SNP [dm3] 3L_12154920_SNP [dm6]	G	C	5.402e^-4	0.918	NON_SYNONYMOUS_CODING Nrx-IV	TF binding site mE1_TFBS_sens
3R	26431769	3R_26431769_INS [dm3] 3R_30606047_INS [dm6]	A	AA	5.404e^-4	0.918	UTR_3_PRIME PH4alphaNE3 UPSTREAM CG31016
X	14842374	X_14842374_INS [dm3] X_14948341_INS [dm6]	A	ACATAGTCCATAAGGTA...	5.414e^-4	0.918	INTRON pdgy	TF binding site mE1_TFBS_HSA
3L	2772387	3L_2772387_SNP [dm3] 3L_2772387_SNP [dm6]	A	T	5.416e^-4	0.918	UPSTREAM CG9977 DOWNSTREAM CG12093 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	11550310	3R_11550310_SNP [dm3] 3R_15724588_SNP [dm6]	A	G	5.417e^-4	0.918	INTERGENIC
3R	11550315	3R_11550315_SNP [dm3] 3R_15724593_SNP [dm6]	G	C	5.417e^-4	0.918	INTERGENIC
3L	9845687	3L_9845687_SNP [dm3] 3L_9852587_SNP [dm6]	T	C	5.418e^-4	0.918	INTRON RasGAP1	TF binding site BDTNP1_TFBS_dl
2L	8533806	2L_8533806_SNP [dm3] 2L_8533806_SNP [dm6]	C	G	5.424e^-4	0.918	INTRON CG17834	TF binding site mE1_TFBS_cad
3R	20659873	3R_20659873_SNP [dm3] 3R_24834151_SNP [dm6]	G	A	5.426e^-4	0.918	UTR_5_PRIME sosie	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20440169	X_20440169_SNP [dm3] X_20569142_SNP [dm6]	G	C	5.442e^-4	0.918	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10218280	2R_10218280_SNP [dm3] 2R_14330775_SNP [dm6]	G	A	5.442e^-4	0.918	INTRON Shroom
2R	13307311	2R_13307311_SNP [dm3] 2R_17419806_SNP [dm6]	G	A	5.443e^-4	0.918	UTR_5_PRIME cnk UPSTREAM l_2_k01209 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
2R	13307312	2R_13307312_SNP [dm3] 2R_17419807_SNP [dm6]	T	C	5.443e^-4	0.918	START_GAINED cnk UTR_5_PRIME cnk UPSTREAM l_2_k01209 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
2L	10318630	2L_10318630_SNP [dm3] 2L_10318630_SNP [dm6]	A	G	5.446e^-4	0.918	SYNONYMOUS_CODING CG5381	TF binding site mE1_TFBS_sens
3L	9480101	3L_9480101_SNP [dm3] 3L_9487001_SNP [dm6]	G	C	5.453e^-4	0.918	SYNONYMOUS_CODING pall DOWNSTREAM Jarid2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	9480248	3L_9480248_SNP [dm3] 3L_9487148_SNP [dm6]	G	A	5.453e^-4	0.918	SYNONYMOUS_CODING pall DOWNSTREAM Jarid2 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	9480308	3L_9480308_SNP [dm3] 3L_9487208_SNP [dm6]	C	G	5.453e^-4	0.918	SYNONYMOUS_CODING pall DOWNSTREAM Jarid2 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	2616127	3L_2616127_SNP [dm3] 3L_2616127_SNP [dm6]	A	T	5.457e^-4	0.918	INTRON Pxn	TF binding site mE1_TFBS_chinmo
2L	22322229	2L_22322229_SNP [dm3] 2L_22322229_SNP [dm6]	T	C	5.458e^-4	0.918	INTRON CG17018
2L	12961924	2L_12961924_SNP [dm3] 2L_12961924_SNP [dm6]	A	C	5.463e^-4	0.918	INTERGENIC
3L	16716570	3L_16716570_SNP [dm3] 3L_16723470_SNP [dm6]	T	C	5.482e^-4	0.918	SYNONYMOUS_CODING Dab UTR_3_PRIME Dab	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8117857	3R_8117857_SNP [dm3] 3R_12292135_SNP [dm6]	G	A	5.486e^-4	0.918	INTRON svp
3R	24510113	3R_24510113_SNP [dm3] 3R_28684391_SNP [dm6]	A	T	5.490e^-4	0.918	INTRON CG9990
3R	13270241	3R_13270241_SNP [dm3] 3R_17444519_SNP [dm6]	T	A	5.492e^-4	0.918	INTRON CG5873
3R	13270258	3R_13270258_SNP [dm3] 3R_17444536_SNP [dm6]	T	A	5.492e^-4	0.918	INTRON CG5873
3L	21150357	3L_21150357_SNP [dm3] 3L_21157257_SNP [dm6]	A	T	5.492e^-4	0.918	INTRON Ac78C
3R	16303698	3R_16303698_DEL [dm3] 3R_20477976_DEL [dm6]	CTC	C	5.503e^-4	0.918	INTRON Gfrl
3L	12465487	3L_12465487_SNP [dm3] 3L_12472387_SNP [dm6]	C	G	5.512e^-4	0.918	INTRON CG10616	TF binding site mE1_TFBS_cad
3L	12465505	3L_12465505_SNP [dm3] 3L_12472405_SNP [dm6]	G	A	5.512e^-4	0.918	INTRON CG10616	TF binding site mE1_TFBS_cad
3L	12465583	3L_12465583_SNP [dm3] 3L_12472483_SNP [dm6]	A	C	5.512e^-4	0.918	INTRON CG10616
3L	12465816	3L_12465816_SNP [dm3] 3L_12472716_SNP [dm6]	G	A	5.512e^-4	0.918	SYNONYMOUS_CODING CG10616
2R	9399423	2R_9399423_SNP [dm3] 2R_13511918_SNP [dm6]	G	T	5.514e^-4	0.918	SYNONYMOUS_CODING mip120	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16097859	2R_16097859_SNP [dm3] 2R_20210354_SNP [dm6]	C	T	5.524e^-4	0.918	INTERGENIC	TF binding site mE1_TFBS_inv
3L	16471465	3L_16471465_SNP [dm3] 3L_16478365_SNP [dm6]	G	C	5.533e^-4	0.918	INTRON CG33158 & 1 other	TF binding site mE1_TFBS_HSA
3L	9322619	3L_9322619_SNP [dm3] 3L_9329519_SNP [dm6]	C	T	5.538e^-4	0.918	INTERGENIC
X	14844658	X_14844658_SNP [dm3] X_14950625_SNP [dm6]	A	C	5.543e^-4	0.918	UTR_5_PRIME pdgy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	19080738	2R_19080738_SNP [dm3] 2R_23193215_SNP [dm6]	T	A	5.558e^-4	0.918	INTRON CG34371
X	19903306	X_19903306_SNP [dm3] X_20009273_SNP [dm6]	A	T	5.565e^-4	0.918	INTRON Dop2R
2R	19557689	2R_19557689_SNP [dm3] 2R_23670166_SNP [dm6]	T	C	5.567e^-4	0.918	SYNONYMOUS_CODING Pde8 INTRON Pde8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12923269	X_12923269_SNP [dm3] X_13029236_SNP [dm6]	C	T	5.575e^-4	0.918	INTRON rad
3L	9844525	3L_9844525_SNP [dm3] 3L_9851425_SNP [dm6]	G	T	5.577e^-4	0.918	INTRON RasGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11807484	2L_11807484_SNP [dm3] 2L_11807484_SNP [dm6]	C	T	5.582e^-4	0.918	INTRON crol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	16475634	3L_16475634_SNP [dm3] 3L_16482534_SNP [dm6]	T	A	5.585e^-4	0.918	INTRON CG33158 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	20440190	X_20440190_SNP [dm3] X_20569163_SNP [dm6]	C	T	5.586e^-4	0.918	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	3662866	X_3662866_INS [dm3] X_3768833_INS [dm6]	T	CTC	5.586e^-4	0.918	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17531672	3L_17531672_SNP [dm3] 3L_17538572_SNP [dm6]	C	T	5.589e^-4	0.918	INTRON Nedd4
2R	10706704	2R_10706704_SNP [dm3] 2R_14819199_SNP [dm6]	A	G	5.594e^-4	0.918	SYNONYMOUS_CODING CG10202	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	14147422	3L_14147422_SNP [dm3] 3L_14154322_SNP [dm6]	G	A	5.600e^-4	0.918	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6555086	2L_6555086_SNP [dm3] 2L_6555086_SNP [dm6]	A	G	5.601e^-4	0.918	DOWNSTREAM Osm6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15209832	3R_15209832_SNP [dm3] 3R_19384110_SNP [dm6]	G	T	5.602e^-4	0.918	INTRON Ino80
2R	18938752	2R_18938752_SNP [dm3] 2R_23051229_SNP [dm6]	C	A	5.603e^-4	0.918	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18502579	2R_18502579_SNP [dm3] 2R_22615074_SNP [dm6]	T	C	5.626e^-4	0.918	INTRON CG33143
3R	7127413	3R_7127413_SNP [dm3] 3R_11301691_SNP [dm6]	T	A	5.633e^-4	0.918	INTRON CR31386
2L	4194834	2L_4194834_SNP [dm3] 2L_4194834_SNP [dm6]	C	T	5.637e^-4	0.918	SYNONYMOUS_CODING CG3714
2R	9805017	2R_9805017_SNP [dm3] 2R_13917512_SNP [dm6]	G	A	5.637e^-4	0.918	INTRON shot
3R	23679530	3R_23679530_SNP [dm3] 3R_27853808_SNP [dm6]	T	A	5.671e^-4	0.918	INTRON CG34353
2R	14185843	2R_14185843_SNP [dm3] 2R_18298338_SNP [dm6]	T	C	5.675e^-4	0.918	SYNONYMOUS_CODING CG18539 UTR_5_PRIME CG18539 UPSTREAM CG18540 DOWNSTREAM CG18538 INTRON sbb
X	19902009	X_19902009_DEL [dm3] X_20007976_DEL [dm6]	AA	A	5.680e^-4	0.918	INTRON Dop2R
3L	10113014	3L_10113014_SNP [dm3] 3L_10119914_SNP [dm6]	C	A	5.686e^-4	0.918	INTRON dpr6
3R	24630145	3R_24630145_SNP [dm3] 3R_28804423_SNP [dm6]	T	A	5.687e^-4	0.918	INTERGENIC
3L	10224376	3L_10224376_DEL [dm3] 3L_10231276_DEL [dm6]	TG	T	5.695e^-4	0.918	INTERGENIC
X	3658517	X_3658517_SNP [dm3] X_3764484_SNP [dm6]	C	T	5.696e^-4	0.918	INTRON tlk	TF binding site BDTNP1_TFBS_dl
3R	21612740	3R_21612740_SNP [dm3] 3R_25787018_SNP [dm6]	A	G	5.698e^-4	0.918	SYNONYMOUS_CODING CG4960 DOWNSTREAM CG31380
2L	2277218	2L_2277218_SNP [dm3] 2L_2277218_SNP [dm6]	G	A	5.708e^-4	0.918	DOWNSTREAM CR43753 INTRON CR43753
2L	11172040	2L_11172040_SNP [dm3] 2L_11172040_SNP [dm6]	A	T	5.715e^-4	0.918	UPSTREAM Vm32E INTRON Ca-beta	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_cad
3R	16570205	3R_16570205_SNP [dm3] 3R_20744483_SNP [dm6]	C	G	5.716e^-4	0.918	SYNONYMOUS_CODING CG31200 UPSTREAM CG31199 INTRON CG42322	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	16570211	3R_16570211_SNP [dm3] 3R_20744489_SNP [dm6]	T	G	5.716e^-4	0.918	SYNONYMOUS_CODING CG31200 UPSTREAM CG31199 INTRON CG42322	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	15748792	3L_15748792_SNP [dm3] 3L_15755692_SNP [dm6]	A	T	5.743e^-4	0.918	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	12260179	2R_12260179_SNP [dm3] 2R_16372674_SNP [dm6]	A	C	5.756e^-4	0.918	INTERGENIC
2R	15443178	2R_15443178_SNP [dm3] 2R_19555673_SNP [dm6]	T	C	5.772e^-4	0.918	INTRON sm	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	1113582	3L_1113582_SNP [dm3] 3L_1113582_SNP [dm6]	G	A	5.780e^-4	0.918	INTERGENIC
X	17393030	X_17393030_SNP [dm3] X_17498997_SNP [dm6]	G	A	5.792e^-4	0.918	INTRON CG43658
3L	770520	3L_770520_SNP [dm3] 3L_770520_SNP [dm6]	C	T	5.793e^-4	0.918	DOWNSTREAM tRNA:CR32480 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	400062	3L_400062_SNP [dm3] 3L_400062_SNP [dm6]	A	G	5.796e^-4	0.918	INTERGENIC	TF binding site mE1_TFBS_cad
2L	7270458	2L_7270458_SNP [dm3] 2L_7270458_SNP [dm6]	A	G	5.801e^-4	0.918	INTRON Wnt4
3L	12548217	3L_12548217_SNP [dm3] 3L_12555117_SNP [dm6]	T	C	5.809e^-4	0.918	INTRON sowah
3R	1010768	3R_1010768_SNP [dm3] 3R_5185046_SNP [dm6]	G	T	5.820e^-4	0.918	INTRON cno
3R	25798771	3R_25798771_SNP [dm3] 3R_29973049_SNP [dm6]	G	A	5.824e^-4	0.918	INTERGENIC
X	1018235	X_1018235_SNP [dm3] X_1124202_SNP [dm6]	C	T	5.826e^-4	0.918	INTRON CG3655
2L	3977222	2L_3977222_SNP [dm3] 2L_3977222_SNP [dm6]	T	A	5.829e^-4	0.918	INTRON fred
3L	8744765	3L_8744765_SNP [dm3] 3L_8751665_SNP [dm6]	C	T	5.832e^-4	0.918	EXON CR44527	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16097986	2R_16097986_SNP [dm3] 2R_20210481_SNP [dm6]	A	T	5.834e^-4	0.918	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv

Missing results

By genomic position
Variant impact
Gene name

pc_FPKP_PElem_GS phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results