DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.540e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	2.8807	0.0896

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2050 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	4331250	3R_4331250_SNP [dm3] 3R_8505528_SNP [dm6]	T	G	3.274e^-7	0.323	INTERGENIC	TF binding site mE1_TFBS_cad
3L	12131257	3L_12131257_SNP [dm3] 3L_12138157_SNP [dm6]	G	A	3.552e^-7	0.323	SYNONYMOUS_CODING l_3_neo18 UPSTREAM RhoGAP68F DOWNSTREAM Atg12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
2L	8781605	2L_8781605_SNP [dm3] 2L_8781605_SNP [dm6]	A	G	1.059e^-6	0.553	UPSTREAM CG9468 DOWNSTREAM CG42710 INTERGENIC
X	2611629	X_2611629_SNP [dm3] X_2717596_SNP [dm6]	T	C	1.455e^-6	0.553	UTR_3_PRIME CG2694 DOWNSTREAM CG2701
3L	15285419	3L_15285419_SNP [dm3] 3L_15292319_SNP [dm6]	C	G	2.704e^-6	0.553	INTERGENIC
3L	19217897	3L_19217897_SNP [dm3] 3L_19224797_SNP [dm6]	G	A	2.993e^-6	0.553	INTRON fz2
3L	19217913	3L_19217913_SNP [dm3] 3L_19224813_SNP [dm6]	A	G	2.993e^-6	0.553	INTRON fz2
3L	12131675	3L_12131675_SNP [dm3] 3L_12138575_SNP [dm6]	T	A	2.994e^-6	0.553	UTR_5_PRIME l_3_neo18 UPSTREAM RhoGAP68F & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Ubx
3L	12133468	3L_12133468_SNP [dm3] 3L_12140368_SNP [dm6]	G	A	3.671e^-6	0.553	INTRON RhoGAP68F
2R	20238838	2R_20238838_SNP [dm3] 2R_24351315_SNP [dm6]	C	T	3.746e^-6	0.553	DOWNSTREAM CR44811 INTRON bs & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2893998	X_2893998_SNP [dm3] X_2999965_SNP [dm6]	T	A	3.897e^-6	0.553	INTRON kirre
3R	27355717	3R_27355717_SNP [dm3] 3R_31529995_SNP [dm6]	T	A	4.177e^-6	0.553	INTERGENIC
3R	24579641	3R_24579641_SNP [dm3] 3R_28753919_SNP [dm6]	C	A	5.751e^-6	0.553	INTERGENIC	TF binding site mE1_TFBS_inv
2L	19818313	2L_19818313_SNP [dm3] 2L_19818313_SNP [dm6]	A	T	5.876e^-6	0.553	INTRON sick	transposable element FlyBase
2R	16457507	2R_16457507_SNP [dm3] 2R_20570002_SNP [dm6]	A	T	6.078e^-6	0.553	INTRON qsm	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	6496851	3L_6496851_SNP [dm3] 3L_6503751_SNP [dm6]	C	T	6.119e^-6	0.553	INTRON sfl	TF binding site BDTNP1_TFBS_dl
3R	26396664	3R_26396664_DEL [dm3] 3R_30570942_DEL [dm6]	TGACT	T	6.275e^-6	0.553	UPSTREAM tmod INTRON tmod
2L	8769220	2L_8769220_SNP [dm3] 2L_8769220_SNP [dm6]	T	A	6.787e^-6	0.553	SYNONYMOUS_CODING CG9465 UPSTREAM CG9463
2R	9740764	2R_9740764_SNP [dm3] 2R_13853259_SNP [dm6]	C	G	7.070e^-6	0.553	SYNONYMOUS_CODING CG6543 DOWNSTREAM CG30485	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_sna mE1_TFBS_inv
2R	11156104	2R_11156104_SNP [dm3] 2R_15268599_SNP [dm6]	T	G	7.241e^-6	0.553	INTRON Trpm
3R	27355855	3R_27355855_SNP [dm3] 3R_31530133_SNP [dm6]	T	C	7.653e^-6	0.553	INTERGENIC
2R	16295473	2R_16295473_SNP [dm3] 2R_20407968_SNP [dm6]	C	T	7.781e^-6	0.553	INTERGENIC
3R	18467494	3R_18467494_SNP [dm3] 3R_22641772_SNP [dm6]	C	T	7.851e^-6	0.553	INTRON CG45058
3R	18467505	3R_18467505_SNP [dm3] 3R_22641783_SNP [dm6]	A	T	7.851e^-6	0.553	INTRON CG45058
2L	12959894	2L_12959894_SNP [dm3] 2L_12959894_SNP [dm6]	A	G	7.980e^-6	0.553	INTERGENIC
2L	22322229	2L_22322229_SNP [dm3] 2L_22322229_SNP [dm6]	T	C	8.212e^-6	0.553	INTRON CG17018
2L	12961924	2L_12961924_SNP [dm3] 2L_12961924_SNP [dm6]	A	C	8.605e^-6	0.553	INTERGENIC
3R	6906223	3R_6906223_SNP [dm3] 3R_11080501_SNP [dm6]	A	C	8.807e^-6	0.553	INTERGENIC
X	8113500	X_8113500_SNP [dm3] X_8219467_SNP [dm6]	T	A	9.045e^-6	0.553	INTRON sdt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	19180226	3L_19180226_SNP [dm3] 3L_19187126_SNP [dm6]	G	T	9.130e^-6	0.553	INTRON fz2
2L	4204566	2L_4204566_SNP [dm3] 2L_4204566_SNP [dm6]	C	T	1.035e^-5	0.554	NON_SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_sens
3L	12128964	3L_12128964_SNP [dm3] 3L_12135864_SNP [dm6]	C	T	1.067e^-5	0.554	SYNONYMOUS_CODING CG5645	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	12129837	3L_12129837_SNP [dm3] 3L_12136737_SNP [dm6]	A	T	1.067e^-5	0.554	UPSTREAM Atg12 & 1 other DOWNSTREAM l_3_neo18 INTERGENIC	TF binding site mE1_TFBS_cad
3L	12130109	3L_12130109_SNP [dm3] 3L_12137009_SNP [dm6]	C	A	1.067e^-5	0.554	UTR_5_PRIME Atg12 UPSTREAM CG5645 DOWNSTREAM l_3_neo18
3L	12130243	3L_12130243_DEL [dm3] 3L_12137143_DEL [dm6]	CTT	C	1.067e^-5	0.554	UPSTREAM CG5645 DOWNSTREAM l_3_neo18 INTRON Atg12
3L	17853328	3L_17853328_SNP [dm3] 3L_17860228_SNP [dm6]	T	G	1.121e^-5	0.566	SYNONYMOUS_CODING CG34002
2R	16611878	2R_16611878_SNP [dm3] 2R_20724373_SNP [dm6]	A	T	1.172e^-5	0.575	INTRON dpr	TF binding site mE1_TFBS_sbb
3L	2858594	3L_2858594_DEL [dm3] 3L_2858594_DEL [dm6]	ATA	A	1.215e^-5	0.581	INTRON CG43444	insulator Insulator_Class_II.mE01
3L	17850683	3L_17850683_SNP [dm3] 3L_17857583_SNP [dm6]	C	T	1.345e^-5	0.604	UPSTREAM CG5535 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	9805525	2R_9805525_SNP [dm3] 2R_13918020_SNP [dm6]	A	G	1.352e^-5	0.604	INTRON shot
3L	3493158	3L_3493158_SNP [dm3] 3L_3493158_SNP [dm6]	T	C	1.412e^-5	0.604	INTRON CG42324
2L	12961774	2L_12961774_INS [dm3] 2L_12961774_INS [dm6]	A	AA	1.419e^-5	0.604	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	15294571	2R_15294571_SNP [dm3] 2R_19407066_SNP [dm6]	T	G	1.429e^-5	0.604	UTR_3_PRIME hts INTRON hts
3L	12128460	3L_12128460_SNP [dm3] 3L_12135360_SNP [dm6]	G	A	1.638e^-5	0.673	SYNONYMOUS_CODING CG5645	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	4433154	X_4433154_SNP [dm3] X_4539121_SNP [dm6]	C	T	1.666e^-5	0.673	SYNONYMOUS_CODING rb INTRON CR32773	TF binding site mE1_TFBS_sens
2R	16690130	2R_16690130_SNP [dm3] 2R_20802625_SNP [dm6]	A	C	1.709e^-5	0.675	INTERGENIC
2R	20006383	2R_20006383_SNP [dm3] 2R_24118860_SNP [dm6]	T	A	1.989e^-5	0.76	INTRON CG3257	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	10115037	3L_10115037_SNP [dm3] 3L_10121937_SNP [dm6]	C	T	2.125e^-5	0.76	INTRON dpr6
2R	11304765	2R_11304765_SNP [dm3] 2R_15417260_SNP [dm6]	T	C	2.190e^-5	0.76	INTRON CG43729
X	5468501	X_5468501_SNP [dm3] X_5574468_SNP [dm6]	C	T	2.252e^-5	0.76	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4659296	3L_4659296_SNP [dm3] 3L_4659296_SNP [dm6]	T	C	2.254e^-5	0.76	INTRON axo
3L	4659302	3L_4659302_SNP [dm3] 3L_4659302_SNP [dm6]	A	G	2.254e^-5	0.76	INTRON axo
3L	4659304	3L_4659304_SNP [dm3] 3L_4659304_SNP [dm6]	A	T	2.254e^-5	0.76	INTRON axo
3L	8673546	3L_8673546_SNP [dm3] 3L_8680446_SNP [dm6]	G	A	2.332e^-5	0.76	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	19580071	2L_19580071_SNP [dm3] 2L_19580071_SNP [dm6]	C	A	2.353e^-5	0.76	NON_SYNONYMOUS_CODING CG10268 DOWNSTREAM msb1l & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	5242341	X_5242341_INS [dm3] X_5348308_INS [dm6]	T	TT	2.679e^-5	0.76	INTRON SK
2R	17750945	2R_17750945_SNP [dm3] 2R_21863440_SNP [dm6]	A	C	2.685e^-5	0.76	INTERGENIC
3L	2985251	3L_2985251_SNP [dm3] 3L_2985251_SNP [dm6]	T	G	2.728e^-5	0.76	INTERGENIC
3L	11551811	3L_11551811_SNP [dm3] 3L_11558711_SNP [dm6]	G	A	2.729e^-5	0.76	UTR_5_PRIME Mob2 INTRON Mob2	TF binding site mE1_TFBS_cad
3R	3703864	3R_3703864_SNP [dm3] 3R_7878142_SNP [dm6]	A	G	2.742e^-5	0.76	INTRON CG17816
2L	4148869	2L_4148869_SNP [dm3] 2L_4148869_SNP [dm6]	C	T	2.786e^-5	0.76	UPSTREAM CG2955 INTERGENIC
3R	10567761	3R_10567761_SNP [dm3] 3R_14742039_SNP [dm6]	T	C	2.811e^-5	0.76	UTR_5_PRIME jvl UPSTREAM eff	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
3L	4659310	3L_4659310_SNP [dm3] 3L_4659310_SNP [dm6]	G	A	2.885e^-5	0.76	INTRON axo
X	6007635	X_6007635_SNP [dm3] X_6113602_SNP [dm6]	G	A	2.924e^-5	0.76	SYNONYMOUS_CODING Ca-alpha1T	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11688234	2R_11688234_SNP [dm3] 2R_15800729_SNP [dm6]	C	A	2.945e^-5	0.76	INTRON Zasp52 & 1 other
3L	6565578	3L_6565578_SNP [dm3] 3L_6572478_SNP [dm6]	A	G	3.060e^-5	0.76	INTRON CG18769 & 1 other
2L	9151139	2L_9151139_INS [dm3] 2L_9151139_INS [dm6]	A	AA	3.241e^-5	0.76	UPSTREAM CG32982 INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	4659254	3L_4659254_SNP [dm3] 3L_4659254_SNP [dm6]	A	T	3.249e^-5	0.76	INTRON axo
3L	11000608	3L_11000608_SNP [dm3] 3L_11007508_SNP [dm6]	C	T	3.261e^-5	0.76	INTRON klu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	14359397	2L_14359397_SNP [dm3] 2L_14359397_SNP [dm6]	C	G	3.346e^-5	0.76	SYNONYMOUS_CODING Pgant35A DOWNSTREAM Rab14 EXON CR43463	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Ubx
3R	968557	3R_968557_SNP [dm3] 3R_5142835_SNP [dm6]	C	T	3.352e^-5	0.76	INTERGENIC
3L	16019910	3L_16019910_SNP [dm3] 3L_16026810_SNP [dm6]	T	G	3.502e^-5	0.76	INTRON Notum	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	14987444	3L_14987444_SNP [dm3] 3L_14994344_SNP [dm6]	C	T	3.512e^-5	0.76	INTRON Zip71B	TF binding site mE1_TFBS_cad
2R	6343862	2R_6343862_INS [dm3] 2R_10456357_INS [dm6]	A	ACCCCC	3.534e^-5	0.76	INTRON Galphao & 1 other	TF binding site mE1_TFBS_inv
2R	6343863	2R_6343863_SNP [dm3] 2R_10456358_SNP [dm6]	T	C	3.534e^-5	0.76	INTRON Galphao & 1 other	TF binding site mE1_TFBS_inv
3L	6535050	3L_6535050_SNP [dm3] 3L_6541950_SNP [dm6]	T	C	3.540e^-5	0.76	INTRON sfl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	21328967	3L_21328967_SNP [dm3] 3L_21335867_SNP [dm6]	C	A	3.559e^-5	0.76	NON_SYNONYMOUS_CODING CG7338 DOWNSTREAM Rab26	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	21329575	3L_21329575_SNP [dm3] 3L_21336475_SNP [dm6]	C	G	3.559e^-5	0.76	NON_SYNONYMOUS_CODING CG7338	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	11383402	3L_11383402_SNP [dm3] 3L_11390302_SNP [dm6]	A	C	3.607e^-5	0.76	INTERGENIC
2R	7888285	2R_7888285_SNP [dm3] 2R_12000780_SNP [dm6]	T	A	3.731e^-5	0.76	DOWNSTREAM otk INTERGENIC
3L	19034475	3L_19034475_SNP [dm3] 3L_19041375_SNP [dm6]	T	C	3.738e^-5	0.76	INTRON nkd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11830598	2R_11830598_SNP [dm3] 2R_15943093_SNP [dm6]	G	A	3.747e^-5	0.76	UPSTREAM CG30093 INTRON Cyp4aa1
3L	11383403	3L_11383403_SNP [dm3] 3L_11390303_SNP [dm6]	A	G	3.768e^-5	0.76	INTERGENIC
3L	17853812	3L_17853812_SNP [dm3] 3L_17860712_SNP [dm6]	C	G	3.772e^-5	0.76	DOWNSTREAM CG34002 INTERGENIC
2L	22322001	2L_22322001_SNP [dm3] 2L_22322001_SNP [dm6]	C	T	3.798e^-5	0.76	INTRON CG17018	transposable element FlyBase
3L	7628925	3L_7628925_SNP [dm3] 3L_7635825_SNP [dm6]	G	A	3.914e^-5	0.76	INTRON CG33275	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	747174	3L_747174_SNP [dm3] 3L_747174_SNP [dm6]	T	C	3.949e^-5	0.76	INTRON hng3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	920946	2L_920946_SNP [dm3] 2L_920946_SNP [dm6]	T	C	3.981e^-5	0.76	INTERGENIC
3L	4659206	3L_4659206_SNP [dm3] 3L_4659206_SNP [dm6]	G	T	4.013e^-5	0.76	INTRON axo
2L	21730347	2L_21730347_SNP [dm3] 2L_21730347_SNP [dm6]	T	C	4.070e^-5	0.76	INTERGENIC	transposable element FlyBase
2R	16619549	2R_16619549_SNP [dm3] 2R_20732044_SNP [dm6]	T	A	4.140e^-5	0.76	INTRON dpr
3L	12129240	3L_12129240_SNP [dm3] 3L_12136140_SNP [dm6]	C	A	4.210e^-5	0.76	NON_SYNONYMOUS_CODING CG5645 UPSTREAM Atg12	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	6606854	3L_6606854_SNP [dm3] 3L_6613754_SNP [dm6]	A	G	4.272e^-5	0.76	UTR_5_PRIME CG8398 INTRON CG8398
3R	26982549	3R_26982549_SNP [dm3] 3R_31156827_SNP [dm6]	A	G	4.274e^-5	0.76	INTRON Gycbeta100B
3L	11663985	3L_11663985_SNP [dm3] 3L_11670885_SNP [dm6]	G	A	4.323e^-5	0.76	INTRON CG32085
X	1354610	X_1354610_INS [dm3] X_1460577_INS [dm6]	T	TA	4.382e^-5	0.76	UTR_5_PRIME CG14786 DOWNSTREAM CG14787	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
X	13817436	X_13817436_SNP [dm3] X_13923403_SNP [dm6]	C	T	4.414e^-5	0.76	INTRON mamo
3L	4659205	3L_4659205_SNP [dm3] 3L_4659205_SNP [dm6]	G	T	4.417e^-5	0.76	INTRON axo
3L	4659225	3L_4659225_SNP [dm3] 3L_4659225_SNP [dm6]	G	C	4.417e^-5	0.76	INTRON axo
3L	4659235	3L_4659235_SNP [dm3] 3L_4659235_SNP [dm6]	T	C	4.417e^-5	0.76	INTRON axo
3L	6161964	3L_6161964_SNP [dm3] 3L_6168864_SNP [dm6]	A	G	4.552e^-5	0.76	UTR_3_PRIME CG10289 DOWNSTREAM CG10289	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	12124625	3L_12124625_SNP [dm3] 3L_12131525_SNP [dm6]	C	T	4.558e^-5	0.76	UTR_3_PRIME Lsp2 UPSTREAM CG11534	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad
3L	12124996	3L_12124996_SNP [dm3] 3L_12131896_SNP [dm6]	A	C	4.558e^-5	0.76	UPSTREAM CG11534 DOWNSTREAM Lsp2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	12125098	3L_12125098_SNP [dm3] 3L_12131998_SNP [dm6]	A	T	4.558e^-5	0.76	UPSTREAM CG11534 DOWNSTREAM Lsp2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	12126432	3L_12126432_SNP [dm3] 3L_12133332_SNP [dm6]	A	G	4.558e^-5	0.76	NON_SYNONYMOUS_CODING CG11534 DOWNSTREAM CG5645	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3L	12127239	3L_12127239_SNP [dm3] 3L_12134139_SNP [dm6]	A	C	4.558e^-5	0.76	NON_SYNONYMOUS_CODING CG5645 DOWNSTREAM CG11534
3L	12133187	3L_12133187_SNP [dm3] 3L_12140087_SNP [dm6]	C	T	4.558e^-5	0.76	UTR_5_PRIME RhoGAP68F
3L	12133385	3L_12133385_SNP [dm3] 3L_12140285_SNP [dm6]	A	T	4.558e^-5	0.76	INTRON RhoGAP68F
3L	12133451	3L_12133451_SNP [dm3] 3L_12140351_SNP [dm6]	T	A	4.558e^-5	0.76	INTRON RhoGAP68F
3L	13767518	3L_13767518_SNP [dm3] 3L_13774418_SNP [dm6]	T	A	4.634e^-5	0.765	INTRON bru-3	TF binding site mE1_TFBS_HSA
3L	12129782	3L_12129782_SNP [dm3] 3L_12136682_SNP [dm6]	C	T	4.713e^-5	0.765	UTR_5_PRIME CG5645 UPSTREAM Atg12 DOWNSTREAM l_3_neo18	TF binding site mE1_TFBS_cad
3L	2996384	3L_2996384_SNP [dm3] 3L_2996384_SNP [dm6]	G	A	4.786e^-5	0.765	DOWNSTREAM CG2113 INTERGENIC
3L	10396532	3L_10396532_SNP [dm3] 3L_10403432_SNP [dm6]	C	A	4.787e^-5	0.765	INTERGENIC
2R	16725560	2R_16725560_DEL [dm3] 2R_20838055_DEL [dm6]	TGTT	A	4.812e^-5	0.765	INTRON CR44667	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3R	22750306	3R_22750306_SNP [dm3] 3R_26924584_SNP [dm6]	A	G	4.845e^-5	0.765	INTRON sda
2R	9775517	2R_9775517_SNP [dm3] 2R_13888012_SNP [dm6]	A	G	4.887e^-5	0.765	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	12433763	3R_12433763_SNP [dm3] 3R_16608041_SNP [dm6]	T	C	4.990e^-5	0.77	INTERGENIC
2L	22327595	2L_22327595_SNP [dm3] 2L_22327595_SNP [dm6]	A	G	5.004e^-5	0.77	INTRON CG17018	transposable element FlyBase
2L	12486790	2L_12486790_SNP [dm3] 2L_12486790_SNP [dm6]	A	G	5.062e^-5	0.773	INTRON bun
2L	11244648	2L_11244648_SNP [dm3] 2L_11244648_SNP [dm6]	T	A	5.136e^-5	0.777	INTRON ab	TF binding site BDTNP1_TFBS_twi
3L	18789180	3L_18789180_SNP [dm3] 3L_18796080_SNP [dm6]	G	C	5.256e^-5	0.781	INTRON ftz-f1
2L	3837369	2L_3837369_SNP [dm3] 2L_3837369_SNP [dm6]	T	C	5.267e^-5	0.781	SYNONYMOUS_CODING slp2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9887737	2R_9887737_SNP [dm3] 2R_14000232_SNP [dm6]	G	A	5.287e^-5	0.781	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	8673489	3L_8673489_SNP [dm3] 3L_8680389_SNP [dm6]	A	G	5.361e^-5	0.782	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	18421700	3L_18421700_SNP [dm3] 3L_18428600_SNP [dm6]	C	T	5.382e^-5	0.782	INTERGENIC
3R	22723940	3R_22723940_SNP [dm3] 3R_26898218_SNP [dm6]	G	A	5.475e^-5	0.789	INTRON T48	regulatory region REDfly_CRMs
2L	12619172	2L_12619172_SNP [dm3] 2L_12619172_SNP [dm6]	C	T	5.694e^-5	0.81	INTRON Ref2 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	10601356	3R_10601356_SNP [dm3] 3R_14775634_SNP [dm6]	A	T	5.762e^-5	0.81	INTRON jvl
3L	10520264	3L_10520264_SNP [dm3] 3L_10527164_SNP [dm6]	C	G	5.800e^-5	0.81	INTRON A2bp1
3L	6535073	3L_6535073_SNP [dm3] 3L_6541973_SNP [dm6]	A	T	5.918e^-5	0.81	INTRON sfl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17750934	2R_17750934_SNP [dm3] 2R_21863429_SNP [dm6]	C	T	6.015e^-5	0.81	INTERGENIC
3L	6179603	3L_6179603_SNP [dm3] 3L_6186503_SNP [dm6]	G	A	6.132e^-5	0.81	SYNONYMOUS_CODING D19A DOWNSTREAM CG43293	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12619164	2L_12619164_SNP [dm3] 2L_12619164_SNP [dm6]	A	G	6.172e^-5	0.81	INTRON Ref2 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	12619167	2L_12619167_SNP [dm3] 2L_12619167_SNP [dm6]	T	A	6.172e^-5	0.81	INTRON Ref2 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	12619177	2L_12619177_SNP [dm3] 2L_12619177_SNP [dm6]	C	A	6.172e^-5	0.81	INTRON Ref2 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	3906588	3L_3906588_SNP [dm3] 3L_3906588_SNP [dm6]	C	T	6.173e^-5	0.81	SYNONYMOUS_CODING ida	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	4659280	3L_4659280_SNP [dm3] 3L_4659280_SNP [dm6]	A	G	6.179e^-5	0.81	INTRON axo
3L	4659283	3L_4659283_SNP [dm3] 3L_4659283_SNP [dm6]	A	C	6.179e^-5	0.81	INTRON axo
3R	10817274	3R_10817274_SNP [dm3] 3R_14991552_SNP [dm6]	A	C	6.266e^-5	0.81	INTERGENIC
2L	14359378	2L_14359378_SNP [dm3] 2L_14359378_SNP [dm6]	C	T	6.269e^-5	0.81	UTR_5_PRIME Pgant35A DOWNSTREAM Rab14 EXON CR43463	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Ubx
2R	8563519	2R_8563519_SNP [dm3] 2R_12676014_SNP [dm6]	T	G	6.290e^-5	0.81	UPSTREAM CG42708 INTRON CG42708	TF binding site mE1_TFBS_inv
2L	19818310	2L_19818310_INS [dm3] 2L_19818310_INS [dm6]	T	TAT	6.368e^-5	0.814	INTRON sick	transposable element FlyBase
3L	12133251	3L_12133251_SNP [dm3] 3L_12140151_SNP [dm6]	C	T	6.424e^-5	0.814	INTRON RhoGAP68F
2L	3985015	2L_3985015_SNP [dm3] 2L_3985015_SNP [dm6]	C	A	6.540e^-5	0.814	INTRON fred
2L	8764349	2L_8764349_SNP [dm3] 2L_8764349_SNP [dm6]	T	C	6.592e^-5	0.814	DOWNSTREAM CG9463 INTERGENIC
2L	14367287	2L_14367287_SNP [dm3] 2L_14367287_SNP [dm6]	G	T	6.677e^-5	0.814	DOWNSTREAM spel1 INTERGENIC
3R	26982735	3R_26982735_SNP [dm3] 3R_31157013_SNP [dm6]	C	A	6.692e^-5	0.814	INTRON Gycbeta100B
2R	18059760	2R_18059760_SNP [dm3] 2R_22172255_SNP [dm6]	A	G	6.697e^-5	0.814	SPLICE_SITE_REGION a DOWNSTREAM CG3045 INTRON a
2R	17139640	2R_17139640_SNP [dm3] 2R_21252135_SNP [dm6]	C	T	6.732e^-5	0.814	UPSTREAM ASPP INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1
X	2713498	X_2713498_SNP [dm3] X_2819465_SNP [dm6]	T	C	6.763e^-5	0.814	INTRON kirre
3L	17883695	3L_17883695_SNP [dm3] 3L_17890595_SNP [dm6]	T	G	6.767e^-5	0.814	SYNONYMOUS_CODING CG7402
3R	13895133	3R_13895133_SNP [dm3] 3R_18069411_SNP [dm6]	T	A	6.849e^-5	0.814	INTERGENIC
3L	21329260	3L_21329260_SNP [dm3] 3L_21336160_SNP [dm6]	A	G	6.860e^-5	0.814	SYNONYMOUS_CODING CG7338	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	3837362	2L_3837362_SNP [dm3] 2L_3837362_SNP [dm6]	A	G	6.989e^-5	0.815	SYNONYMOUS_CODING slp2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	23959905	3R_23959905_SNP [dm3] 3R_28134183_SNP [dm6]	A	G	6.990e^-5	0.815	INTERGENIC
3L	1887676	3L_1887676_SNP [dm3] 3L_1887676_SNP [dm6]	T	C	7.164e^-5	0.815	INTRON Tmhs	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3L	17883822	3L_17883822_SNP [dm3] 3L_17890722_SNP [dm6]	C	T	7.165e^-5	0.815	SYNONYMOUS_CODING CG7402
2R	15443178	2R_15443178_SNP [dm3] 2R_19555673_SNP [dm6]	T	C	7.228e^-5	0.815	INTRON sm	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	12133181	3L_12133181_SNP [dm3] 3L_12140081_SNP [dm6]	T	C	7.236e^-5	0.815	UTR_5_PRIME RhoGAP68F
2L	12619154	2L_12619154_SNP [dm3] 2L_12619154_SNP [dm6]	G	A	7.267e^-5	0.815	INTRON Ref2 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	4969407	3R_4969407_SNP [dm3] 3R_9143685_SNP [dm6]	T	C	7.329e^-5	0.815	INTRON pum
3L	10732027	3L_10732027_SNP [dm3] 3L_10738927_SNP [dm6]	T	C	7.334e^-5	0.815	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7022271	2L_7022271_SNP [dm3] 2L_7022271_SNP [dm6]	T	A	7.343e^-5	0.815	SYNONYMOUS_CODING Pcp INTRON ade3
3L	17940012	3L_17940012_SNP [dm3] 3L_17946912_SNP [dm6]	T	C	7.441e^-5	0.815	DOWNSTREAM CG43174 & 1 other INTERGENIC
3R	26396855	3R_26396855_SNP [dm3] 3R_30571133_SNP [dm6]	C	T	7.469e^-5	0.815	UPSTREAM tmod INTRON tmod
3L	6179159	3L_6179159_SNP [dm3] 3L_6186059_SNP [dm6]	G	A	7.644e^-5	0.815	UTR_3_PRIME D19A DOWNSTREAM CG43293
2L	19818318	2L_19818318_SNP [dm3] 2L_19818318_SNP [dm6]	A	G	7.748e^-5	0.815	INTRON sick	transposable element FlyBase
3L	19196974	3L_19196974_SNP [dm3] 3L_19203874_SNP [dm6]	A	C	8.016e^-5	0.815	INTRON fz2
3L	1843145	3L_1843145_SNP [dm3] 3L_1843145_SNP [dm6]	C	T	8.019e^-5	0.815	INTERGENIC
2L	14357290	2L_14357290_SNP [dm3] 2L_14357290_SNP [dm6]	A	C	8.052e^-5	0.815	UTR_5_PRIME Rab14 UPSTREAM CR44851 INTRON Rab14
2R	16617572	2R_16617572_SNP [dm3] 2R_20730067_SNP [dm6]	C	G	8.074e^-5	0.815	NON_SYNONYMOUS_CODING CG13442 INTRON dpr
3L	12125144	3L_12125144_SNP [dm3] 3L_12132044_SNP [dm6]	A	G	8.161e^-5	0.815	UPSTREAM CG11534 DOWNSTREAM Lsp2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	12125153	3L_12125153_SNP [dm3] 3L_12132053_SNP [dm6]	T	G	8.161e^-5	0.815	UPSTREAM CG11534 DOWNSTREAM Lsp2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	12125161	3L_12125161_SNP [dm3] 3L_12132061_SNP [dm6]	A	T	8.161e^-5	0.815	UPSTREAM CG11534 DOWNSTREAM Lsp2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	12125164	3L_12125164_SNP [dm3] 3L_12132064_SNP [dm6]	T	C	8.161e^-5	0.815	UPSTREAM CG11534 DOWNSTREAM Lsp2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	12170376	2R_12170376_SNP [dm3] 2R_16282871_SNP [dm6]	G	A	8.228e^-5	0.815	UTR_5_PRIME CG7755 UPSTREAM CG9068	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18164960	3R_18164960_SNP [dm3] 3R_22339238_SNP [dm6]	G	A	8.240e^-5	0.815	INTRON CG5388	TF binding site mE1_TFBS_Trl
3L	17883828	3L_17883828_SNP [dm3] 3L_17890728_SNP [dm6]	G	A	8.293e^-5	0.815	NON_SYNONYMOUS_CODING CG7402
3R	4969342	3R_4969342_SNP [dm3] 3R_9143620_SNP [dm6]	A	G	8.299e^-5	0.815	INTRON pum
2R	20593656	2R_20593656_SNP [dm3] 2R_24706133_SNP [dm6]	C	A	8.320e^-5	0.815	INTRON Mid1
3R	6903921	3R_6903921_SNP [dm3] 3R_11078199_SNP [dm6]	T	C	8.320e^-5	0.815	INTERGENIC
2R	7888212	2R_7888212_SNP [dm3] 2R_12000707_SNP [dm6]	A	G	8.439e^-5	0.815	DOWNSTREAM otk INTERGENIC
3R	26982703	3R_26982703_SNP [dm3] 3R_31156981_SNP [dm6]	G	T	8.528e^-5	0.815	INTRON Gycbeta100B
2R	16457393	2R_16457393_SNP [dm3] 2R_20569888_SNP [dm6]	T	G	8.544e^-5	0.815	INTRON qsm	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8269514	3L_8269514_SNP [dm3] 3L_8276414_SNP [dm6]	C	T	8.573e^-5	0.815	SYNONYMOUS_CODING Dscam4	TF binding site mE1_TFBS_chinmo
3L	7814988	3L_7814988_SNP [dm3] 3L_7821888_SNP [dm6]	T	C	8.575e^-5	0.815	INTRON Pdp1
3L	1076908	3L_1076908_SNP [dm3] 3L_1076908_SNP [dm6]	T	G	8.628e^-5	0.815	INTRON bab1
2R	20425599	2R_20425599_SNP [dm3] 2R_24538076_SNP [dm6]	A	G	8.634e^-5	0.815	INTRON CG4622 & 1 other
2R	18427191	2R_18427191_SNP [dm3] 2R_22539686_SNP [dm6]	T	C	8.664e^-5	0.815	INTRON px
3L	396475	3L_396475_SNP [dm3] 3L_396475_SNP [dm6]	T	A	8.812e^-5	0.815	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	9487925	3L_9487925_SNP [dm3] 3L_9494825_SNP [dm6]	T	G	8.971e^-5	0.815	UTR_3_PRIME path
3L	9487963	3L_9487963_SNP [dm3] 3L_9494863_SNP [dm6]	A	T	8.971e^-5	0.815	UTR_3_PRIME path
3L	9487974	3L_9487974_SNP [dm3] 3L_9494874_SNP [dm6]	C	G	8.971e^-5	0.815	UTR_3_PRIME path
3L	2985548	3L_2985548_SNP [dm3] 3L_2985548_SNP [dm6]	G	A	9.069e^-5	0.815	INTERGENIC
3L	12132880	3L_12132880_SNP [dm3] 3L_12139780_SNP [dm6]	A	G	9.081e^-5	0.815	INTRON RhoGAP68F
3L	12133320	3L_12133320_SNP [dm3] 3L_12140220_SNP [dm6]	C	A	9.081e^-5	0.815	INTRON RhoGAP68F
3L	12133345	3L_12133345_SNP [dm3] 3L_12140245_SNP [dm6]	G	A	9.081e^-5	0.815	INTRON RhoGAP68F
3L	12133352	3L_12133352_SNP [dm3] 3L_12140252_SNP [dm6]	C	T	9.081e^-5	0.815	INTRON RhoGAP68F
3L	15285245	3L_15285245_SNP [dm3] 3L_15292145_SNP [dm6]	C	T	9.209e^-5	0.815	INTERGENIC
3R	5225193	3R_5225193_SNP [dm3] 3R_9399471_SNP [dm6]	T	C	9.215e^-5	0.815	DOWNSTREAM CG34117 & 1 other INTRON Or85f	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	19788814	2R_19788814_SNP [dm3] 2R_23901291_SNP [dm6]	G	A	9.310e^-5	0.815	SYNONYMOUS_CODING Lpt
2L	366653	2L_366653_DEL [dm3] 2L_366653_DEL [dm6]	ATTAAAATCAATCA...	A	9.334e^-5	0.815	INTERGENIC
2L	366790	2L_366790_SNP [dm3] 2L_366790_SNP [dm6]	T	C	9.334e^-5	0.815	INTERGENIC
2R	11304797	2R_11304797_SNP [dm3] 2R_15417292_SNP [dm6]	C	T	9.365e^-5	0.815	INTRON CG43729
2L	6906763	2L_6906763_SNP [dm3] 2L_6906763_SNP [dm6]	G	A	9.418e^-5	0.815	UTR_3_PRIME CG13773 DOWNSTREAM Nlg2
3R	3703757	3R_3703757_INS [dm3] 3R_7878035_INS [dm6]	A	AGCA	9.423e^-5	0.815	INTRON CG17816
2L	11807484	2L_11807484_SNP [dm3] 2L_11807484_SNP [dm6]	C	T	9.426e^-5	0.815	INTRON crol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	17884036	3L_17884036_SNP [dm3] 3L_17890936_SNP [dm6]	G	A	9.448e^-5	0.815	NON_SYNONYMOUS_CODING CG7402 DOWNSTREAM Tsp74F
2R	16567538	2R_16567538_DEL [dm3] 2R_20680033_DEL [dm6]	TTAGACAAATGCCGACT...	T	9.457e^-5	0.815	INTERGENIC
3L	21222505	3L_21222505_SNP [dm3] 3L_21229405_SNP [dm6]	T	C	9.529e^-5	0.815	INTRON Eip78C
3R	5225240	3R_5225240_SNP [dm3] 3R_9399518_SNP [dm6]	G	C	9.598e^-5	0.815	SYNONYMOUS_CODING Or85f DOWNSTREAM CG34117 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	17843189	3L_17843189_SNP [dm3] 3L_17850089_SNP [dm6]	C	A	9.628e^-5	0.815	SYNONYMOUS_CODING CG7441 DOWNSTREAM CG7430	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	9664820	2R_9664820_SNP [dm3] 2R_13777315_SNP [dm6]	A	G	9.747e^-5	0.815	DOWNSTREAM S-Lap7 INTRON Cpr50Ca
2L	4204471	2L_4204471_SNP [dm3] 2L_4204471_SNP [dm6]	G	T	9.754e^-5	0.815	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_sens
2R	7888162	2R_7888162_SNP [dm3] 2R_12000657_SNP [dm6]	A	T	9.756e^-5	0.815	DOWNSTREAM otk INTERGENIC
2R	7888244	2R_7888244_SNP [dm3] 2R_12000739_SNP [dm6]	T	C	9.756e^-5	0.815	DOWNSTREAM otk INTERGENIC
2R	7888294	2R_7888294_SNP [dm3] 2R_12000789_SNP [dm6]	G	A	9.756e^-5	0.815	DOWNSTREAM otk INTERGENIC
2L	5790652	2L_5790652_SNP [dm3] 2L_5790652_SNP [dm6]	T	C	9.778e^-5	0.815	INTRON CG9171	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	21729624	2L_21729624_SNP [dm3] 2L_21729624_SNP [dm6]	A	G	9.838e^-5	0.816	DOWNSTREAM CG31619 INTERGENIC	transposable element FlyBase
3L	6020432	3L_6020432_DEL [dm3] 3L_6027332_DEL [dm6]	ACT	A	1.003e^-4	0.824	INTERGENIC
3L	2329869	3L_2329869_SNP [dm3] 3L_2329869_SNP [dm6]	C	A	1.011e^-4	0.824	INTRON MsR1
3R	17779047	3R_17779047_INS [dm3] 3R_21953325_INS [dm6]	T	TT	1.015e^-4	0.824	INTRON Eip93F
2R	6343702	2R_6343702_DEL [dm3] 2R_10456197_DEL [dm6]	CC	C	1.015e^-4	0.824	INTRON Galphao & 1 other	TF binding site mE1_TFBS_inv
3L	5755955	3L_5755955_SNP [dm3] 3L_5762855_SNP [dm6]	G	A	1.019e^-4	0.824	DOWNSTREAM snoRNA:Psi18S-1397 & 2 others INTRON CG10576
3R	17766228	3R_17766228_SNP [dm3] 3R_21940506_SNP [dm6]	A	T	1.024e^-4	0.824	INTERGENIC
2R	14771477	2R_14771477_SNP [dm3] 2R_18883972_SNP [dm6]	G	A	1.043e^-4	0.824	INTRON sano
3L	7217086	3L_7217086_SNP [dm3] 3L_7223986_SNP [dm6]	C	T	1.044e^-4	0.824	DOWNSTREAM CR45410 INTERGENIC
2R	17525473	2R_17525473_SNP [dm3] 2R_21637968_SNP [dm6]	T	C	1.050e^-4	0.824	SYNONYMOUS_CODING CG10321 UTR_3_PRIME CG10321	TF binding site mE1_TFBS_cad
X	3919091	X_3919091_SNP [dm3] X_4025058_SNP [dm6]	C	A	1.066e^-4	0.824	INTERGENIC
2R	9662009	2R_9662009_SNP [dm3] 2R_13774504_SNP [dm6]	A	G	1.068e^-4	0.824	SYNONYMOUS_CODING Cpr50Ca	TF binding site mE1_TFBS_chinmo
3L	2983717	3L_2983717_SNP [dm3] 3L_2983717_SNP [dm6]	A	G	1.071e^-4	0.824	DOWNSTREAM CG2107 INTERGENIC
3R	10604014	3R_10604014_SNP [dm3] 3R_14778292_SNP [dm6]	A	T	1.081e^-4	0.824	INTRON jvl
2R	9337481	2R_9337481_SNP [dm3] 2R_13449976_SNP [dm6]	T	C	1.082e^-4	0.824	UPSTREAM cnn & 1 other INTRON cnn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_Ubx
2L	14264591	2L_14264591_SNP [dm3] 2L_14264591_SNP [dm6]	A	C	1.088e^-4	0.824	INTRON wb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	12963009	2L_12963009_SNP [dm3] 2L_12963009_SNP [dm6]	T	C	1.089e^-4	0.824	INTERGENIC
2L	12963229	2L_12963229_SNP [dm3] 2L_12963229_SNP [dm6]	G	A	1.089e^-4	0.824	INTERGENIC
2L	12965318	2L_12965318_SNP [dm3] 2L_12965318_SNP [dm6]	G	T	1.089e^-4	0.824	INTERGENIC
2L	6902654	2L_6902654_SNP [dm3] 2L_6902654_SNP [dm6]	G	T	1.091e^-4	0.824	DOWNSTREAM mir-932 INTRON Nlg2
X	2579429	X_2579429_SNP [dm3] X_2685396_SNP [dm6]	G	A	1.093e^-4	0.824	UPSTREAM per INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	14865438	2L_14865438_SNP [dm3] 2L_14865438_SNP [dm6]	C	T	1.096e^-4	0.824	INTERGENIC
3R	25798613	3R_25798613_SNP [dm3] 3R_29972891_SNP [dm6]	G	A	1.098e^-4	0.824	INTERGENIC
2R	11155516	2R_11155516_SNP [dm3] 2R_15268011_SNP [dm6]	G	A	1.112e^-4	0.824	INTRON Trpm
3L	400062	3L_400062_SNP [dm3] 3L_400062_SNP [dm6]	A	G	1.116e^-4	0.824	INTERGENIC	TF binding site mE1_TFBS_cad
2L	12957682	2L_12957682_SNP [dm3] 2L_12957682_SNP [dm6]	A	G	1.116e^-4	0.824	INTERGENIC
3L	8672837	3L_8672837_SNP [dm3] 3L_8679737_SNP [dm6]	A	G	1.116e^-4	0.824	DOWNSTREAM h INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	8672848	3L_8672848_SNP [dm3] 3L_8679748_SNP [dm6]	C	T	1.116e^-4	0.824	DOWNSTREAM h INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	6535299	3L_6535299_SNP [dm3] 3L_6542199_SNP [dm6]	T	G	1.147e^-4	0.825	INTRON sfl	TF binding site BDTNP1_TFBS_dl
3L	21150357	3L_21150357_SNP [dm3] 3L_21157257_SNP [dm6]	A	T	1.151e^-4	0.825	INTRON Ac78C
X	12766474	X_12766474_SNP [dm3] X_12872441_SNP [dm6]	T	C	1.165e^-4	0.825	INTRON Pde9
2L	12619143	2L_12619143_SNP [dm3] 2L_12619143_SNP [dm6]	A	G	1.171e^-4	0.825	INTRON Ref2 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	19426809	2R_19426809_SNP [dm3] 2R_23539286_SNP [dm6]	A	C	1.184e^-4	0.825	SYNONYMOUS_CODING ppk3 UPSTREAM bw	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4659210	3L_4659210_SNP [dm3] 3L_4659210_SNP [dm6]	G	T	1.186e^-4	0.825	INTRON axo
2R	17027151	2R_17027151_SNP [dm3] 2R_21139646_SNP [dm6]	T	A	1.186e^-4	0.825	UTR_5_PRIME Magi INTRON Magi
2R	10007072	2R_10007072_SNP [dm3] 2R_14119567_SNP [dm6]	C	T	1.188e^-4	0.825	INTRON Prosap
3L	7080427	3L_7080427_SNP [dm3] 3L_7087327_SNP [dm6]	A	G	1.188e^-4	0.825	UPSTREAM Cpr65Ea DOWNSTREAM Cpr65Eb INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	17730876	2R_17730876_SNP [dm3] 2R_21843371_SNP [dm6]	C	G	1.194e^-4	0.825	UPSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17730893	2R_17730893_SNP [dm3] 2R_21843388_SNP [dm6]	T	A	1.194e^-4	0.825	UPSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6532994	2R_6532994_SNP [dm3] 2R_10645489_SNP [dm6]	G	T	1.198e^-4	0.825	UPSTREAM Elp2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3L	16019761	3L_16019761_SNP [dm3] 3L_16026661_SNP [dm6]	A	C	1.204e^-4	0.825	INTRON Notum	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	2985390	3L_2985390_SNP [dm3] 3L_2985390_SNP [dm6]	T	A	1.209e^-4	0.825	INTERGENIC
X	5000100	X_5000100_SNP [dm3] X_5106067_SNP [dm6]	G	A	1.210e^-4	0.825	INTRON rg & 1 other
3L	17884547	3L_17884547_SNP [dm3] 3L_17891447_SNP [dm6]	A	G	1.212e^-4	0.825	DOWNSTREAM Tsp74F & 1 other INTERGENIC
2L	21959081	2L_21959081_SNP [dm3] 2L_21959081_SNP [dm6]	G	C	1.215e^-4	0.825	DOWNSTREAM CR44217 & 1 other EXON CR44803
3L	16962274	3L_16962274_SNP [dm3] 3L_16969174_SNP [dm6]	T	A	1.216e^-4	0.825	UPSTREAM Exn DOWNSTREAM Nc73EF INTERGENIC
3L	16962282	3L_16962282_SNP [dm3] 3L_16969182_SNP [dm6]	T	G	1.216e^-4	0.825	UPSTREAM Exn DOWNSTREAM Nc73EF INTERGENIC
2R	17623961	2R_17623961_SNP [dm3] 2R_21736456_SNP [dm6]	T	A	1.224e^-4	0.825	INTERGENIC
2L	359421	2L_359421_SNP [dm3] 2L_359421_SNP [dm6]	A	T	1.226e^-4	0.825	INTERGENIC
2R	19062736	2R_19062736_SNP [dm3] 2R_23175213_SNP [dm6]	C	T	1.229e^-4	0.825	INTRON CG34371	TF binding site BDTNP1_TFBS_da
3L	19018715	3L_19018715_SNP [dm3] 3L_19025615_SNP [dm6]	C	G	1.232e^-4	0.825	INTRON nkd
3L	19019050	3L_19019050_SNP [dm3] 3L_19025950_SNP [dm6]	C	A	1.232e^-4	0.825	INTRON nkd
3R	5225273	3R_5225273_SNP [dm3] 3R_9399551_SNP [dm6]	G	A	1.236e^-4	0.825	SYNONYMOUS_STOP Or85f DOWNSTREAM CG34117 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	5476037	X_5476037_SNP [dm3] X_5582004_SNP [dm6]	C	T	1.243e^-4	0.825	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	4965180	3R_4965180_SNP [dm3] 3R_9139458_SNP [dm6]	C	T	1.256e^-4	0.825	INTRON pum
2L	11807411	2L_11807411_SNP [dm3] 2L_11807411_SNP [dm6]	C	T	1.259e^-4	0.825	INTRON crol	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	16987827	2R_16987827_SNP [dm3] 2R_21100322_SNP [dm6]	T	C	1.260e^-4	0.825	SYNONYMOUS_CODING CG34396	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_inv
3L	22850541	3L_22850541_SNP [dm3] 3L_22857441_SNP [dm6]	T	C	1.262e^-4	0.825	INTERGENIC
2L	12959314	2L_12959314_DEL [dm3] 2L_12959314_DEL [dm6]	GATCG	G	1.263e^-4	0.825	INTERGENIC
2L	12960108	2L_12960108_SNP [dm3] 2L_12960108_SNP [dm6]	G	A	1.263e^-4	0.825	INTERGENIC
3L	2659386	3L_2659386_SNP [dm3] 3L_2659386_SNP [dm6]	T	G	1.287e^-4	0.83	UPSTREAM CG33233 INTRON Fife	TF binding site mE1_TFBS_chinmo
2R	14825710	2R_14825710_SNP [dm3] 2R_18938205_SNP [dm6]	T	C	1.307e^-4	0.83	INTRON sano
2L	3837329	2L_3837329_SNP [dm3] 2L_3837329_SNP [dm6]	G	A	1.310e^-4	0.83	SYNONYMOUS_CODING slp2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	22760425	3L_22760425_SNP [dm3] 3L_22767325_SNP [dm6]	C	G	1.321e^-4	0.83	INTRON SPoCk
2R	6790721	2R_6790721_SNP [dm3] 2R_10903216_SNP [dm6]	G	C	1.324e^-4	0.83	UPSTREAM CG12943 INTERGENIC
3R	10605145	3R_10605145_SNP [dm3] 3R_14779423_SNP [dm6]	A	G	1.329e^-4	0.83	INTRON jvl	TF binding site mE1_TFBS_HSA
3L	1938310	3L_1938310_SNP [dm3] 3L_1938310_SNP [dm6]	G	A	1.350e^-4	0.83	DOWNSTREAM CR44536 INTRON CG5687
3R	10262661	3R_10262661_SNP [dm3] 3R_14436939_SNP [dm6]	C	A	1.351e^-4	0.83	INTRON cv-c
2R	9337480	2R_9337480_SNP [dm3] 2R_13449975_SNP [dm6]	A	G	1.355e^-4	0.83	UPSTREAM cnn & 1 other INTRON cnn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_Ubx
3L	12125053	3L_12125053_SNP [dm3] 3L_12131953_SNP [dm6]	G	T	1.359e^-4	0.83	UPSTREAM CG11534 DOWNSTREAM Lsp2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	10624763	2R_10624763_SNP [dm3] 2R_14737258_SNP [dm6]	G	C	1.361e^-4	0.83	DOWNSTREAM CR43428 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	8563593	2R_8563593_SNP [dm3] 2R_12676088_SNP [dm6]	A	G	1.363e^-4	0.83	UPSTREAM CG42708 INTRON CG42708	TF binding site mE1_TFBS_inv
3L	9263105	3L_9263105_SNP [dm3] 3L_9270005_SNP [dm6]	A	T	1.364e^-4	0.83	INTRON GluRIB
X	8247428	X_8247428_SNP [dm3] X_8353395_SNP [dm6]	T	G	1.365e^-4	0.83	INTRON nAChRalpha3
3L	17882423	3L_17882423_SNP [dm3] 3L_17889323_SNP [dm6]	C	T	1.368e^-4	0.83	SPLICE_SITE_REGION CG7402 INTRON CG7402
2L	14264589	2L_14264589_INS [dm3] 2L_14264589_INS [dm6]	T	ATC	1.369e^-4	0.83	INTRON wb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	11951939	3L_11951939_SNP [dm3] 3L_11958839_SNP [dm6]	G	A	1.370e^-4	0.83	UTR_3_PRIME CG43294 DOWNSTREAM prc
3L	10520020	3L_10520020_INS [dm3] 3L_10526920_INS [dm6]	A	AGAGGAA	1.376e^-4	0.83	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11414867	3L_11414867_SNP [dm3] 3L_11421767_SNP [dm6]	A	C	1.379e^-4	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11116750	3L_11116750_DEL [dm3] 3L_11123650_DEL [dm6]	TTT	T	1.380e^-4	0.83	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6535290	3L_6535290_SNP [dm3] 3L_6542190_SNP [dm6]	T	C	1.383e^-4	0.83	INTRON sfl	TF binding site BDTNP1_TFBS_dl
3L	6535316	3L_6535316_SNP [dm3] 3L_6542216_SNP [dm6]	T	C	1.383e^-4	0.83	INTRON sfl	TF binding site BDTNP1_TFBS_dl
3L	6535402	3L_6535402_SNP [dm3] 3L_6542302_SNP [dm6]	C	T	1.383e^-4	0.83	INTRON sfl
3L	6535404	3L_6535404_SNP [dm3] 3L_6542304_SNP [dm6]	C	A	1.383e^-4	0.83	INTRON sfl
2L	12959936	2L_12959936_SNP [dm3] 2L_12959936_SNP [dm6]	G	A	1.386e^-4	0.83	INTERGENIC
3R	23157711	3R_23157711_SNP [dm3] 3R_27331989_SNP [dm6]	T	C	1.389e^-4	0.83	INTERGENIC
2L	12974119	2L_12974119_SNP [dm3] 2L_12974119_SNP [dm6]	C	T	1.412e^-4	0.831	UPSTREAM Vha68-2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	5256503	X_5256503_SNP [dm3] X_5362470_SNP [dm6]	A	G	1.412e^-4	0.831	INTRON SK
3L	17897831	3L_17897831_SNP [dm3] 3L_17904731_SNP [dm6]	G	A	1.420e^-4	0.831	INTRON Prestin
X	2713502	X_2713502_SNP [dm3] X_2819469_SNP [dm6]	A	T	1.424e^-4	0.831	INTRON kirre
2R	10764262	2R_10764262_SNP [dm3] 2R_14876757_SNP [dm6]	C	T	1.426e^-4	0.831	SYNONYMOUS_CODING Cyp6a23	TF binding site mE1_TFBS_sens
3L	18979436	3L_18979436_SNP [dm3] 3L_18986336_SNP [dm6]	T	A	1.433e^-4	0.831	NON_SYNONYMOUS_CODING CG11619 DOWNSTREAM CG14075
3R	26468217	3R_26468217_SNP [dm3] 3R_30642495_SNP [dm6]	T	C	1.434e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5626728	2R_5626728_SNP [dm3] 2R_9739223_SNP [dm6]	T	C	1.437e^-4	0.831	INTRON sqa
2R	6089561	2R_6089561_SNP [dm3] 2R_10202056_SNP [dm6]	C	T	1.444e^-4	0.831	INTERGENIC
3L	20791671	3L_20791671_SNP [dm3] 3L_20798571_SNP [dm6]	T	A	1.448e^-4	0.831	UPSTREAM CG4365 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	885686	2L_885686_SNP [dm3] 2L_885686_SNP [dm6]	T	G	1.449e^-4	0.831	UPSTREAM CG15824 INTERGENIC
2R	7888169	2R_7888169_SNP [dm3] 2R_12000664_SNP [dm6]	T	A	1.450e^-4	0.831	DOWNSTREAM otk INTERGENIC
2R	8944185	2R_8944185_SNP [dm3] 2R_13056680_SNP [dm6]	G	A	1.469e^-4	0.831	UTR_3_PRIME Drl-2
3L	5345456	3L_5345456_SNP [dm3] 3L_5352356_SNP [dm6]	T	C	1.474e^-4	0.831	UPSTREAM lama INTRON lama	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
3L	16563006	3L_16563006_SNP [dm3] 3L_16569906_SNP [dm6]	G	A	1.475e^-4	0.831	INTRON Mipp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	921667	2L_921667_INS [dm3] 2L_921667_INS [dm6]	T	TTA	1.481e^-4	0.831	INTERGENIC
2L	12962638	2L_12962638_INS [dm3] 2L_12962638_INS [dm6]	T	TGT	1.482e^-4	0.831	INTERGENIC
3L	17978802	3L_17978802_SNP [dm3] 3L_17985702_SNP [dm6]	A	G	1.490e^-4	0.831	INTRON Eip75B
3L	7403844	3L_7403844_SNP [dm3] 3L_7410744_SNP [dm6]	T	G	1.491e^-4	0.831	INTERGENIC
2L	12958114	2L_12958114_SNP [dm3] 2L_12958114_SNP [dm6]	A	C	1.491e^-4	0.831	INTERGENIC
2L	12682295	2L_12682295_SNP [dm3] 2L_12682295_SNP [dm6]	T	C	1.492e^-4	0.831	INTRON pdm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	11216827	2R_11216827_SNP [dm3] 2R_15329322_SNP [dm6]	C	T	1.501e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	21019954	3R_21019954_SNP [dm3] 3R_25194232_SNP [dm6]	C	T	1.507e^-4	0.831	UPSTREAM lobo INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
3R	6590888	3R_6590888_SNP [dm3] 3R_10765166_SNP [dm6]	A	G	1.508e^-4	0.831	NON_SYNONYMOUS_CODING Cap-H2
3L	16755247	3L_16755247_SNP [dm3] 3L_16762147_SNP [dm6]	T	G	1.509e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	16755250	3L_16755250_SNP [dm3] 3L_16762150_SNP [dm6]	T	G	1.509e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	921008	2L_921008_INS [dm3] 2L_921008_INS [dm6]	A	AAATA	1.530e^-4	0.834	INTERGENIC
3L	21261293	3L_21261293_SNP [dm3] 3L_21268193_SNP [dm6]	C	A	1.538e^-4	0.834	UPSTREAM CR45162 & 1 other DOWNSTREAM CG9389 INTRON CG9391
3L	21142944	3L_21142944_SNP [dm3] 3L_21149844_SNP [dm6]	G	A	1.539e^-4	0.834	INTRON Ac78C
X	3360040	X_3360040_SNP [dm3] X_3466007_SNP [dm6]	C	A	1.546e^-4	0.834	UTR_3_PRIME CG12206 INTRON CR44999
3L	11663862	3L_11663862_SNP [dm3] 3L_11670762_SNP [dm6]	A	G	1.549e^-4	0.834	INTRON CG32085
3R	9948570	3R_9948570_SNP [dm3] 3R_14122848_SNP [dm6]	C	A	1.550e^-4	0.834	SYNONYMOUS_CODING twf UPSTREAM Abi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	15183577	2R_15183577_SNP [dm3] 2R_19296072_SNP [dm6]	G	C	1.551e^-4	0.834	INTRON Tab2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	20457957	X_20457957_SNP [dm3] X_20586930_SNP [dm6]	G	C	1.556e^-4	0.834	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	13770012	2R_13770012_SNP [dm3] 2R_17882507_SNP [dm6]	T	C	1.556e^-4	0.834	UPSTREAM CG30110 INTRON Elk
2L	13841463	2L_13841463_SNP [dm3] 2L_13841463_SNP [dm6]	G	A	1.567e^-4	0.836	NON_SYNONYMOUS_CODING CG33307 INTRON CenG1A
2L	9630107	2L_9630107_SNP [dm3] 2L_9630107_SNP [dm6]	T	C	1.571e^-4	0.836	INTERGENIC
3L	16563257	3L_16563257_SNP [dm3] 3L_16570157_SNP [dm6]	C	A	1.577e^-4	0.836	INTRON Mipp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11167942	2R_11167942_SNP [dm3] 2R_15280437_SNP [dm6]	T	C	1.594e^-4	0.836	INTRON Trpm
3R	18164929	3R_18164929_SNP [dm3] 3R_22339207_SNP [dm6]	G	A	1.594e^-4	0.836	INTRON CG5388	TF binding site mE1_TFBS_Trl
3L	4659222	3L_4659222_SNP [dm3] 3L_4659222_SNP [dm6]	T	G	1.596e^-4	0.836	INTRON axo
3L	1281763	3L_1281763_SNP [dm3] 3L_1281763_SNP [dm6]	G	C	1.601e^-4	0.836	INTRON CG32333
3L	11383364	3L_11383364_SNP [dm3] 3L_11390264_SNP [dm6]	G	A	1.604e^-4	0.836	INTERGENIC
3L	1447144	3L_1447144_SNP [dm3] 3L_1447144_SNP [dm6]	C	T	1.608e^-4	0.836	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17882300	3L_17882300_SNP [dm3] 3L_17889200_SNP [dm6]	C	A	1.611e^-4	0.836	INTRON CG7402
2R	17334235	2R_17334235_SNP [dm3] 2R_21446730_SNP [dm6]	T	C	1.611e^-4	0.836	INTRON Sdc
3L	19122970	3L_19122970_SNP [dm3] 3L_19129870_SNP [dm6]	A	T	1.616e^-4	0.837	UPSTREAM Spn75F INTRON CG14082
2L	1746707	2L_1746707_SNP [dm3] 2L_1746707_SNP [dm6]	T	C	1.628e^-4	0.84	INTRON CG17646
X	2579441	X_2579441_SNP [dm3] X_2685408_SNP [dm6]	C	T	1.631e^-4	0.84	UPSTREAM per INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	14414383	2R_14414383_SNP [dm3] 2R_18526878_SNP [dm6]	C	T	1.647e^-4	0.84	UPSTREAM CG10924 DOWNSTREAM CG43066 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	3360052	X_3360052_SNP [dm3] X_3466019_SNP [dm6]	T	A	1.657e^-4	0.84	UTR_3_PRIME CG12206 INTRON CR44999
3R	964868	3R_964868_SNP [dm3] 3R_5139146_SNP [dm6]	A	G	1.658e^-4	0.84	UPSTREAM CG12589 INTERGENIC
2L	12959436	2L_12959436_SNP [dm3] 2L_12959436_SNP [dm6]	T	A	1.665e^-4	0.84	INTERGENIC
X	5387588	X_5387588_SNP [dm3] X_5493555_SNP [dm6]	A	C	1.667e^-4	0.84	UTR_3_PRIME SPR & 1 other DOWNSTREAM frma & 1 other
3L	7648057	3L_7648057_SNP [dm3] 3L_7654957_SNP [dm6]	T	A	1.671e^-4	0.84	UPSTREAM CG7492 DOWNSTREAM Ank2 INTRON CG32373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7648223	3L_7648223_SNP [dm3] 3L_7655123_SNP [dm6]	C	T	1.671e^-4	0.84	UPSTREAM CG7492 DOWNSTREAM Ank2 INTRON CG32373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18025110	2R_18025110_SNP [dm3] 2R_22137605_SNP [dm6]	A	G	1.676e^-4	0.84	START_GAINED a UTR_5_PRIME a INTRON a
3R	10814081	3R_10814081_INS [dm3] 3R_14988359_INS [dm6]	G	GAATGATG	1.679e^-4	0.84	INTERGENIC
3R	23410861	3R_23410861_SNP [dm3] 3R_27585139_SNP [dm6]	G	A	1.683e^-4	0.84	SYNONYMOUS_CODING raps	TF binding site mE1_TFBS_chinmo
2R	11899533	2R_11899533_SNP [dm3] 2R_16012028_SNP [dm6]	G	T	1.683e^-4	0.84	SYNONYMOUS_CODING CG8389 UPSTREAM CG8388	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	12406301	2L_12406301_SNP [dm3] 2L_12406301_SNP [dm6]	T	A	1.687e^-4	0.84	DOWNSTREAM vir-1 INTRON vir-1
3L	3846842	3L_3846842_SNP [dm3] 3L_3846842_SNP [dm6]	T	A	1.702e^-4	0.841	INTRON Awh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
2R	15188894	2R_15188894_SNP [dm3] 2R_19301389_SNP [dm6]	C	T	1.708e^-4	0.841	INTRON Tab2	TF binding site mE1_TFBS_inv
2R	15188897	2R_15188897_SNP [dm3] 2R_19301392_SNP [dm6]	A	G	1.708e^-4	0.841	INTRON Tab2	TF binding site mE1_TFBS_inv
2L	11443197	2L_11443197_SNP [dm3] 2L_11443197_SNP [dm6]	G	A	1.708e^-4	0.841	INTRON salm
2R	8533527	2R_8533527_SNP [dm3] 2R_12646022_SNP [dm6]	A	T	1.723e^-4	0.846	UPSTREAM CG8785 INTRON CG8785	TF binding site mE1_TFBS_cad
3R	6307201	3R_6307201_SNP [dm3] 3R_10481479_SNP [dm6]	A	G	1.727e^-4	0.846	INTERGENIC
X	6678972	X_6678972_SNP [dm3] X_6784939_SNP [dm6]	C	A	1.742e^-4	0.851	INTRON C3G
2R	8410923	2R_8410923_SNP [dm3] 2R_12523418_SNP [dm6]	A	G	1.749e^-4	0.852	DOWNSTREAM CG33632 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7271654	3L_7271654_SNP [dm3] 3L_7278554_SNP [dm6]	T	A	1.759e^-4	0.854	INTRON unc-13-4A
3R	16303513	3R_16303513_SNP [dm3] 3R_20477791_SNP [dm6]	T	C	1.771e^-4	0.858	INTRON Gfrl
2R	17749081	2R_17749081_SNP [dm3] 2R_21861576_SNP [dm6]	A	G	1.782e^-4	0.859	SYNONYMOUS_CODING CG9294	TF binding site mE1_TFBS_sens
2R	16567608	2R_16567608_SNP [dm3] 2R_20680103_SNP [dm6]	T	C	1.784e^-4	0.859	INTERGENIC
3L	21328215	3L_21328215_SNP [dm3] 3L_21335115_SNP [dm6]	T	C	1.794e^-4	0.862	UPSTREAM CG7338 DOWNSTREAM Rab26 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn
3L	20678872	3L_20678872_SNP [dm3] 3L_20685772_SNP [dm6]	G	A	1.799e^-4	0.863	INTERGENIC	TF binding site mE1_TFBS_sens
3L	9263106	3L_9263106_SNP [dm3] 3L_9270006_SNP [dm6]	T	C	1.828e^-4	0.863	INTRON GluRIB
2L	9173615	2L_9173615_SNP [dm3] 2L_9173615_SNP [dm6]	C	T	1.829e^-4	0.863	INTRON tai	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	9173617	2L_9173617_SNP [dm3] 2L_9173617_SNP [dm6]	A	T	1.829e^-4	0.863	INTRON tai	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	11649982	3L_11649982_SNP [dm3] 3L_11656882_SNP [dm6]	C	G	1.831e^-4	0.863	UPSTREAM mir-274 INTRON CG32085
3L	11650000	3L_11650000_SNP [dm3] 3L_11656900_SNP [dm6]	G	A	1.831e^-4	0.863	UPSTREAM mir-274 INTRON CG32085
3L	11650009	3L_11650009_SNP [dm3] 3L_11656909_SNP [dm6]	G	A	1.831e^-4	0.863	UPSTREAM mir-274 INTRON CG32085
3R	25043456	3R_25043456_SNP [dm3] 3R_29217734_SNP [dm6]	G	A	1.836e^-4	0.863	DOWNSTREAM mir-996 INTRON CR31044 EXON CR31044	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	7378244	3R_7378244_SNP [dm3] 3R_11552522_SNP [dm6]	T	A	1.842e^-4	0.863	INTERGENIC
3L	823774	3L_823774_INS [dm3] 3L_823774_INS [dm6]	C	CC	1.847e^-4	0.863	INTERGENIC
2R	19781346	2R_19781346_SNP [dm3] 2R_23893823_SNP [dm6]	T	C	1.849e^-4	0.863	SYNONYMOUS_CODING Upf3 DOWNSTREAM DNA-ligI	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	12343560	3R_12343560_SNP [dm3] 3R_16517838_SNP [dm6]	C	G	1.873e^-4	0.863	INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	8562576	2R_8562576_SNP [dm3] 2R_12675071_SNP [dm6]	A	T	1.875e^-4	0.863	SYNONYMOUS_CODING CG42708 UPSTREAM CG42708 INTRON CG42708
2R	15294701	2R_15294701_SNP [dm3] 2R_19407196_SNP [dm6]	A	T	1.898e^-4	0.863	INTRON hts
2L	22322264	2L_22322264_SNP [dm3] 2L_22322264_SNP [dm6]	A	G	1.899e^-4	0.863	INTRON CG17018
3R	25731080	3R_25731080_SNP [dm3] 3R_29905358_SNP [dm6]	C	T	1.918e^-4	0.863	UPSTREAM CG15515 INTERGENIC
3L	11650529	3L_11650529_SNP [dm3] 3L_11657429_SNP [dm6]	G	A	1.921e^-4	0.863	DOWNSTREAM mir-274 INTRON CG32085
3R	21488861	3R_21488861_SNP [dm3] 3R_25663139_SNP [dm6]	G	C	1.926e^-4	0.863	UPSTREAM CR45208 INTRON RASSF8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	19188663	2L_19188663_SNP [dm3] 2L_19188663_SNP [dm6]	G	A	1.933e^-4	0.863	SYNONYMOUS_CODING pigeon
3L	17976841	3L_17976841_DEL [dm3] 3L_17983741_DEL [dm6]	CTATCACTC	C	1.937e^-4	0.863	INTRON Eip75B
3R	9682343	3R_9682343_SNP [dm3] 3R_13856621_SNP [dm6]	T	A	1.941e^-4	0.863	INTERGENIC
3L	12774984	3L_12774984_SNP [dm3] 3L_12781884_SNP [dm6]	C	A	1.964e^-4	0.863	SYNONYMOUS_CODING CG17666 UPSTREAM CG10969
X	4611103	X_4611103_SNP [dm3] X_4717070_SNP [dm6]	C	A	1.965e^-4	0.863	INTRON Proc-R
3L	5488750	3L_5488750_SNP [dm3] 3L_5495650_SNP [dm6]	T	C	1.965e^-4	0.863	UPSTREAM CR44520 INTERGENIC
3L	8752483	3L_8752483_SNP [dm3] 3L_8759383_SNP [dm6]	T	G	1.967e^-4	0.863	SPLICE_SITE_REGION Fhos INTRON Fhos
3L	8752504	3L_8752504_SNP [dm3] 3L_8759404_SNP [dm6]	A	C	1.967e^-4	0.863	INTRON Fhos
3L	12127060	3L_12127060_SNP [dm3] 3L_12133960_SNP [dm6]	T	G	1.971e^-4	0.863	SYNONYMOUS_CODING CG5645 DOWNSTREAM CG11534	TF binding site BDTNP1_TFBS_twi
3R	6590222	3R_6590222_SNP [dm3] 3R_10764500_SNP [dm6]	C	T	1.973e^-4	0.863	SYNONYMOUS_CODING Cap-H2
2L	14359366	2L_14359366_SNP [dm3] 2L_14359366_SNP [dm6]	T	G	1.982e^-4	0.863	UTR_5_PRIME Pgant35A DOWNSTREAM Rab14 EXON CR43463	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Ubx
2L	19998023	2L_19998023_DEL [dm3] 2L_19998023_DEL [dm6]	ATTA	A	1.994e^-4	0.863	INTRON CG43861
3L	16562611	3L_16562611_SNP [dm3] 3L_16569511_SNP [dm6]	G	C	2.000e^-4	0.863	INTRON Mipp1
3R	17633394	3R_17633394_DEL [dm3] 3R_21807672_DEL [dm6]	AA	A	2.003e^-4	0.863	UTR_5_PRIME CASK INTRON CASK	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	7648079	3L_7648079_SNP [dm3] 3L_7654979_SNP [dm6]	T	G	2.009e^-4	0.863	UPSTREAM CG7492 DOWNSTREAM Ank2 INTRON CG32373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	21314925	3L_21314925_SNP [dm3] 3L_21321825_SNP [dm6]	C	G	2.017e^-4	0.863	UPSTREAM Rab26 INTRON Rab26	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	19349310	3L_19349310_INS [dm3] 3L_19356210_INS [dm6]	A	AA	2.017e^-4	0.863	INTRON CG32206
2R	8533589	2R_8533589_SNP [dm3] 2R_12646084_SNP [dm6]	T	A	2.037e^-4	0.863	UPSTREAM CG8785 INTRON CG8785	TF binding site mE1_TFBS_cad
3R	25156119	3R_25156119_SNP [dm3] 3R_29330397_SNP [dm6]	G	A	2.047e^-4	0.863	INTERGENIC
3R	5480330	3R_5480330_SNP [dm3] 3R_9654608_SNP [dm6]	G	C	2.049e^-4	0.863	SYNONYMOUS_CODING CG9492	TF binding site mE1_TFBS_chinmo
2R	5625341	2R_5625341_SNP [dm3] 2R_9737836_SNP [dm6]	C	G	2.068e^-4	0.863	INTRON sqa
2R	5625598	2R_5625598_SNP [dm3] 2R_9738093_SNP [dm6]	C	T	2.068e^-4	0.863	INTRON sqa
2R	5625633	2R_5625633_SNP [dm3] 2R_9738128_SNP [dm6]	G	C	2.068e^-4	0.863	INTRON sqa
3L	7080622	3L_7080622_SNP [dm3] 3L_7087522_SNP [dm6]	G	T	2.081e^-4	0.863	UPSTREAM Cpr65Ea DOWNSTREAM Cpr65Eb INTERGENIC	TF binding site mE1_TFBS_inv
3L	5668658	3L_5668658_SNP [dm3] 3L_5675558_SNP [dm6]	T	A	2.085e^-4	0.863	INTRON sif
3L	17937119	3L_17937119_SNP [dm3] 3L_17944019_SNP [dm6]	C	G	2.085e^-4	0.863	INTRON CG43174
3L	16019980	3L_16019980_SNP [dm3] 3L_16026880_SNP [dm6]	C	T	2.095e^-4	0.863	INTRON Notum	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	16755291	3L_16755291_SNP [dm3] 3L_16762191_SNP [dm6]	T	A	2.113e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	1468075	X_1468075_DEL [dm3] X_1574042_DEL [dm6]	TT	T	2.114e^-4	0.863	INTRON Mur2B
2R	16354594	2R_16354594_SNP [dm3] 2R_20467089_SNP [dm6]	G	T	2.118e^-4	0.863	INTRON CG12484
2R	10100548	2R_10100548_SNP [dm3] 2R_14213043_SNP [dm6]	G	A	2.118e^-4	0.863	UPSTREAM Sox15 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	7386798	2R_7386798_SNP [dm3] 2R_11499293_SNP [dm6]	T	A	2.118e^-4	0.863	INTRON inv	TF binding site mE1_TFBS_inv
3L	17974476	3L_17974476_SNP [dm3] 3L_17981376_SNP [dm6]	T	A	2.119e^-4	0.863	INTRON Eip75B
3L	663522	3L_663522_SNP [dm3] 3L_663522_SNP [dm6]	C	T	2.121e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1671414	2R_1671414_SNP [dm3] 2R_5783909_SNP [dm6]	A	G	2.126e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_z
2L	3387871	2L_3387871_SNP [dm3] 2L_3387871_SNP [dm6]	A	C	2.127e^-4	0.863	UPSTREAM CR45301 & 1 other DOWNSTREAM CG42460 INTERGENIC
3L	17883380	3L_17883380_SNP [dm3] 3L_17890280_SNP [dm6]	T	A	2.151e^-4	0.863	INTRON CG7402
2L	12961748	2L_12961748_SNP [dm3] 2L_12961748_SNP [dm6]	C	T	2.157e^-4	0.863	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5863071	2R_5863071_SNP [dm3] 2R_9975566_SNP [dm6]	A	G	2.159e^-4	0.863	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
2R	12170506	2R_12170506_SNP [dm3] 2R_16283001_SNP [dm6]	T	G	2.168e^-4	0.863	UPSTREAM CG9068 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3R	12433778	3R_12433778_SNP [dm3] 3R_16608056_SNP [dm6]	A	T	2.173e^-4	0.863	INTERGENIC
2L	12959953	2L_12959953_SNP [dm3] 2L_12959953_SNP [dm6]	G	C	2.178e^-4	0.863	INTERGENIC
2R	19622832	2R_19622832_SNP [dm3] 2R_23735309_SNP [dm6]	C	A	2.182e^-4	0.863	UTR_3_PRIME egl DOWNSTREAM Sesn
2R	15812289	2R_15812289_SNP [dm3] 2R_19924784_SNP [dm6]	A	T	2.183e^-4	0.863	DOWNSTREAM CR44626 INTERGENIC
3R	946430	3R_946430_SNP [dm3] 3R_5120708_SNP [dm6]	C	T	2.189e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	6098623	3R_6098623_SNP [dm3] 3R_10272901_SNP [dm6]	A	C	2.190e^-4	0.863	INTRON CG43143
3L	17842126	3L_17842126_SNP [dm3] 3L_17849026_SNP [dm6]	T	C	2.198e^-4	0.863	UPSTREAM CG7441 INTRON CG7430	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6110895	3L_6110895_SNP [dm3] 3L_6117795_SNP [dm6]	A	C	2.206e^-4	0.863	INTRON Ets65A
2L	4118566	2L_4118566_SNP [dm3] 2L_4118566_SNP [dm6]	A	C	2.211e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16656136	2R_16656136_SNP [dm3] 2R_20768631_SNP [dm6]	C	T	2.216e^-4	0.863	DOWNSTREAM CR44665 INTERGENIC
3R	22789826	3R_22789826_SNP [dm3] 3R_26964104_SNP [dm6]	A	T	2.224e^-4	0.863	INTRON Tsp97E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	6020466	3L_6020466_SNP [dm3] 3L_6027366_SNP [dm6]	C	T	2.227e^-4	0.863	INTERGENIC
3L	21142895	3L_21142895_SNP [dm3] 3L_21149795_SNP [dm6]	A	G	2.232e^-4	0.863	INTRON Ac78C
3L	6289884	3L_6289884_SNP [dm3] 3L_6296784_SNP [dm6]	A	T	2.241e^-4	0.863	INTERGENIC
3L	16019892	3L_16019892_SNP [dm3] 3L_16026792_SNP [dm6]	G	A	2.254e^-4	0.863	INTRON Notum	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	5627942	2L_5627942_SNP [dm3] 2L_5627942_SNP [dm6]	C	A	2.255e^-4	0.863	INTRON CG31646
3R	11702335	3R_11702335_SNP [dm3] 3R_15876613_SNP [dm6]	C	A	2.261e^-4	0.863	UPSTREAM CG31183 INTERGENIC
3L	20839899	3L_20839899_SNP [dm3] 3L_20846799_SNP [dm6]	A	G	2.262e^-4	0.863	SPLICE_SITE_REGION CG32432 INTRON CG32432	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	13895159	3R_13895159_SNP [dm3] 3R_18069437_SNP [dm6]	A	C	2.266e^-4	0.863	INTERGENIC
3L	18838906	3L_18838906_SNP [dm3] 3L_18845806_SNP [dm6]	C	A	2.268e^-4	0.863	INTRON Indy	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	17785829	3L_17785829_SNP [dm3] 3L_17792729_SNP [dm6]	A	G	2.270e^-4	0.863	SYNONYMOUS_CODING CG42816
3L	13989580	3L_13989580_SNP [dm3] 3L_13996480_SNP [dm6]	C	T	2.274e^-4	0.863	UTR_3_PRIME 26-29-p UPSTREAM CG17361	TF binding site mE1_TFBS_cad
2L	10629538	2L_10629538_SNP [dm3] 2L_10629538_SNP [dm6]	C	G	2.276e^-4	0.863	NON_SYNONYMOUS_CODING CG7329
3L	19176067	3L_19176067_DEL [dm3] 3L_19182967_DEL [dm6]	TCCTT	T	2.276e^-4	0.863	INTRON fz2	TF binding site mE1_TFBS_cad
2L	3997210	2L_3997210_SNP [dm3] 2L_3997210_SNP [dm6]	C	T	2.291e^-4	0.863	INTERGENIC
2R	20249665	2R_20249665_SNP [dm3] 2R_24362142_SNP [dm6]	C	T	2.291e^-4	0.863	INTRON bs & 1 other
X	3919011	X_3919011_SNP [dm3] X_4024978_SNP [dm6]	C	T	2.300e^-4	0.863	INTERGENIC
2L	4847904	2L_4847904_SNP [dm3] 2L_4847904_SNP [dm6]	T	A	2.303e^-4	0.863	NON_SYNONYMOUS_CODING CG11927 UPSTREAM mxt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Ubx
2L	4848907	2L_4848907_SNP [dm3] 2L_4848907_SNP [dm6]	A	G	2.303e^-4	0.863	SYNONYMOUS_CODING CG11927 DOWNSTREAM mRpS2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5488655	3L_5488655_SNP [dm3] 3L_5495555_SNP [dm6]	T	G	2.314e^-4	0.863	UPSTREAM CR44520 INTERGENIC
3L	5488662	3L_5488662_DEL [dm3] 3L_5495562_DEL [dm6]	ATACTGAA	A	2.314e^-4	0.863	UPSTREAM CR44520 INTERGENIC
X	4683270	X_4683270_SNP [dm3] X_4789237_SNP [dm6]	A	G	2.318e^-4	0.863	INTERGENIC
2R	10007078	2R_10007078_SNP [dm3] 2R_14119573_SNP [dm6]	C	T	2.323e^-4	0.863	INTRON Prosap
X	2713524	X_2713524_SNP [dm3] X_2819491_SNP [dm6]	A	T	2.325e^-4	0.863	INTRON kirre
3L	19022441	3L_19022441_SNP [dm3] 3L_19029341_SNP [dm6]	G	A	2.330e^-4	0.863	INTRON nkd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13989584	3L_13989584_SNP [dm3] 3L_13996484_SNP [dm6]	C	T	2.340e^-4	0.863	UTR_3_PRIME 26-29-p UPSTREAM CG17361	TF binding site mE1_TFBS_cad
3L	2122359	3L_2122359_SNP [dm3] 3L_2122359_SNP [dm6]	T	G	2.344e^-4	0.863	DOWNSTREAM zormin INTRON zormin
2R	11168109	2R_11168109_SNP [dm3] 2R_15280604_SNP [dm6]	C	T	2.349e^-4	0.863	INTRON Trpm
2R	10201441	2R_10201441_SNP [dm3] 2R_14313936_SNP [dm6]	T	C	2.351e^-4	0.863	INTRON Shroom	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	3369219	3L_3369219_SNP [dm3] 3L_3369219_SNP [dm6]	T	A	2.368e^-4	0.863	UPSTREAM Drs INTERGENIC	regulatory region REDfly_CRMs
3L	3369235	3L_3369235_SNP [dm3] 3L_3369235_SNP [dm6]	T	G	2.368e^-4	0.863	UPSTREAM Drs INTERGENIC	regulatory region REDfly_CRMs
3L	3369323	3L_3369323_SNP [dm3] 3L_3369323_SNP [dm6]	G	A	2.368e^-4	0.863	UPSTREAM Drs INTERGENIC	regulatory region REDfly_CRMs
3L	3369326	3L_3369326_SNP [dm3] 3L_3369326_SNP [dm6]	C	G	2.368e^-4	0.863	UPSTREAM Drs INTERGENIC	regulatory region REDfly_CRMs
2L	22250640	2L_22250640_SNP [dm3] 2L_22250640_SNP [dm6]	T	C	2.374e^-4	0.863	NON_SYNONYMOUS_CODING Tif-IA
2L	8855562	2L_8855562_SNP [dm3] 2L_8855562_SNP [dm6]	A	G	2.378e^-4	0.863	INTERGENIC
3R	6245712	3R_6245712_SNP [dm3] 3R_10419990_SNP [dm6]	T	G	2.395e^-4	0.863	INTERGENIC
2R	5689198	2R_5689198_SNP [dm3] 2R_9801693_SNP [dm6]	G	T	2.406e^-4	0.863	INTRON CG1688
3R	6245627	3R_6245627_SNP [dm3] 3R_10419905_SNP [dm6]	A	G	2.433e^-4	0.863	INTERGENIC
3L	7753897	3L_7753897_SNP [dm3] 3L_7760797_SNP [dm6]	C	G	2.434e^-4	0.863	UPSTREAM Hn INTRON Hn
3L	17976778	3L_17976778_SNP [dm3] 3L_17983678_SNP [dm6]	A	G	2.439e^-4	0.863	INTRON Eip75B
3R	25043447	3R_25043447_SNP [dm3] 3R_29217725_SNP [dm6]	G	C	2.439e^-4	0.863	DOWNSTREAM mir-996 INTRON CR31044 EXON CR31044	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	25043450	3R_25043450_SNP [dm3] 3R_29217728_SNP [dm6]	G	A	2.439e^-4	0.863	DOWNSTREAM mir-996 INTRON CR31044 EXON CR31044	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	25798562	3R_25798562_SNP [dm3] 3R_29972840_SNP [dm6]	A	T	2.445e^-4	0.863	INTERGENIC
3L	7079521	3L_7079521_SNP [dm3] 3L_7086421_SNP [dm6]	A	G	2.462e^-4	0.863	SYNONYMOUS_CODING Cpr65Ea	TF binding site mE1_TFBS_HSA
2L	12943632	2L_12943632_SNP [dm3] 2L_12943632_SNP [dm6]	T	A	2.469e^-4	0.863	INTERGENIC
3L	3637402	3L_3637402_SNP [dm3] 3L_3637402_SNP [dm6]	A	G	2.483e^-4	0.863	INTRON dar1
2R	5687931	2R_5687931_SNP [dm3] 2R_9800426_SNP [dm6]	C	G	2.483e^-4	0.863	INTRON CG1688
3L	11650075	3L_11650075_SNP [dm3] 3L_11656975_SNP [dm6]	G	A	2.494e^-4	0.863	DOWNSTREAM mir-274 INTRON CG32085 EXON mir-274
3L	11650454	3L_11650454_SNP [dm3] 3L_11657354_SNP [dm6]	C	A	2.494e^-4	0.863	DOWNSTREAM mir-274 INTRON CG32085
3L	6468911	3L_6468911_SNP [dm3] 3L_6475811_SNP [dm6]	A	T	2.494e^-4	0.863	INTRON CG42747
3L	6468916	3L_6468916_SNP [dm3] 3L_6475816_SNP [dm6]	G	A	2.494e^-4	0.863	INTRON CG42747
3L	12122445	3L_12122445_SNP [dm3] 3L_12129345_SNP [dm6]	G	A	2.505e^-4	0.863	UPSTREAM Lsp2 DOWNSTREAM CG34241 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13856304	3R_13856304_SNP [dm3] 3R_18030582_SNP [dm6]	G	A	2.510e^-4	0.863	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	19814596	2L_19814596_SNP [dm3] 2L_19814596_SNP [dm6]	G	T	2.518e^-4	0.863	UPSTREAM CG13962 INTRON sick
2L	11651757	2L_11651757_SNP [dm3] 2L_11651757_SNP [dm6]	T	A	2.525e^-4	0.863	SYNONYMOUS_CODING CG12307 UPSTREAM CG4983
X	2799025	X_2799025_SNP [dm3] X_2904992_SNP [dm6]	T	A	2.531e^-4	0.863	INTRON kirre
X	2799026	X_2799026_SNP [dm3] X_2904993_SNP [dm6]	A	T	2.531e^-4	0.863	INTRON kirre
2R	19782204	2R_19782204_SNP [dm3] 2R_23894681_SNP [dm6]	G	A	2.534e^-4	0.863	SYNONYMOUS_CODING Upf3 UPSTREAM CG17658	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	5000046	X_5000046_DEL [dm3] X_5106013_DEL [dm6]	GATAAAGAAAA...	TC	2.537e^-4	0.863	INTRON rg & 1 other
X	5000062	X_5000062_SNP [dm3] X_5106029_SNP [dm6]	T	C	2.537e^-4	0.863	INTRON rg & 1 other
2R	16899188	2R_16899188_SNP [dm3] 2R_21011683_SNP [dm6]	G	T	2.543e^-4	0.863	UPSTREAM CG9346 INTRON grau	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	7953378	3R_7953378_SNP [dm3] 3R_12127656_SNP [dm6]	G	T	2.565e^-4	0.863	INTRON CG4702	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	21330687	3L_21330687_SNP [dm3] 3L_21337587_SNP [dm6]	T	C	2.565e^-4	0.863	SYNONYMOUS_CODING CG7338 DOWNSTREAM CG7324	TF binding site mE1_TFBS_cad
2R	18228316	2R_18228316_SNP [dm3] 2R_22340811_SNP [dm6]	G	A	2.566e^-4	0.863	SYNONYMOUS_CODING Liprin-gamma	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	968476	3R_968476_INS [dm3] 3R_5142754_INS [dm6]	A	ATAA	2.567e^-4	0.863	INTERGENIC
2L	11807939	2L_11807939_SNP [dm3] 2L_11807939_SNP [dm6]	A	G	2.571e^-4	0.863	INTRON crol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
3R	10568038	3R_10568038_SNP [dm3] 3R_14742316_SNP [dm6]	C	G	2.576e^-4	0.863	NON_SYNONYMOUS_CODING jvl UPSTREAM eff	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	13424543	2L_13424543_SNP [dm3] 2L_13424543_SNP [dm6]	C	T	2.579e^-4	0.863	INTRON CG42784
2L	18221642	2L_18221642_SNP [dm3] 2L_18221642_SNP [dm6]	A	T	2.583e^-4	0.863	INTRON CG42750
3L	19034620	3L_19034620_SNP [dm3] 3L_19041520_SNP [dm6]	A	G	2.587e^-4	0.863	INTRON nkd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12448914	2L_12448914_SNP [dm3] 2L_12448914_SNP [dm6]	C	T	2.589e^-4	0.863	SYNONYMOUS_CODING Oatp33Eb UPSTREAM CG5421
X	5242354	X_5242354_SNP [dm3] X_5348321_SNP [dm6]	G	A	2.590e^-4	0.863	INTRON SK
2R	5990304	2R_5990304_SNP [dm3] 2R_10102799_SNP [dm6]	G	T	2.593e^-4	0.863	UPSTREAM 14-3-3zeta INTRON 14-3-3zeta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	17955243	3L_17955243_SNP [dm3] 3L_17962143_SNP [dm6]	C	A	2.603e^-4	0.863	UPSTREAM Eip75B INTRON Eip75B	TF binding site mE1_TFBS_Trl
3L	17955257	3L_17955257_SNP [dm3] 3L_17962157_SNP [dm6]	A	T	2.603e^-4	0.863	UPSTREAM Eip75B INTRON Eip75B	TF binding site mE1_TFBS_Trl
3R	25138699	3R_25138699_SNP [dm3] 3R_29312977_SNP [dm6]	G	T	2.606e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	19670591	2R_19670591_SNP [dm3] 2R_23783068_SNP [dm6]	G	C	2.611e^-4	0.863	INTRON CG9850	TF binding site mE1_TFBS_chinmo
2R	11173422	2R_11173422_SNP [dm3] 2R_15285917_SNP [dm6]	T	C	2.623e^-4	0.863	INTRON Trpm	TF binding site mE1_TFBS_chinmo
2L	22213497	2L_22213497_SNP [dm3] 2L_22213497_SNP [dm6]	A	T	2.624e^-4	0.863	INTRON Ir40a	TF binding site mE1_TFBS_cad
3L	17882594	3L_17882594_SNP [dm3] 3L_17889494_SNP [dm6]	T	A	2.625e^-4	0.863	INTRON CG7402
2R	13996780	2R_13996780_SNP [dm3] 2R_18109275_SNP [dm6]	A	T	2.629e^-4	0.863	UPSTREAM CG5756 & 1 other INTERGENIC
3L	10741742	3L_10741742_SNP [dm3] 3L_10748642_SNP [dm6]	C	A	2.630e^-4	0.863	INTERGENIC
X	8247205	X_8247205_SNP [dm3] X_8353172_SNP [dm6]	T	C	2.631e^-4	0.863	INTRON nAChRalpha3
X	8247211	X_8247211_SNP [dm3] X_8353178_SNP [dm6]	T	C	2.631e^-4	0.863	INTRON nAChRalpha3
3L	2030504	3L_2030504_SNP [dm3] 3L_2030504_SNP [dm6]	G	C	2.638e^-4	0.863	INTERGENIC
2R	14559065	2R_14559065_SNP [dm3] 2R_18671560_SNP [dm6]	G	T	2.641e^-4	0.863	INTRON edl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8752505	3L_8752505_SNP [dm3] 3L_8759405_SNP [dm6]	C	A	2.648e^-4	0.863	INTRON Fhos
2R	5689243	2R_5689243_SNP [dm3] 2R_9801738_SNP [dm6]	T	A	2.649e^-4	0.863	INTRON CG1688
3R	6590867	3R_6590867_SNP [dm3] 3R_10765145_SNP [dm6]	T	C	2.651e^-4	0.863	NON_SYNONYMOUS_CODING Cap-H2
X	12722108	X_12722108_SNP [dm3] X_12828075_SNP [dm6]	A	T	2.656e^-4	0.863	INTRON Pde9
3R	5712761	3R_5712761_SNP [dm3] 3R_9887039_SNP [dm6]	G	A	2.656e^-4	0.863	INTRON Glut4EF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	21277736	3L_21277736_SNP [dm3] 3L_21284636_SNP [dm6]	T	C	2.657e^-4	0.863	INTRON CG12974	TF binding site BDTNP1_TFBS_dl
2R	15317301	2R_15317301_SNP [dm3] 2R_19429796_SNP [dm6]	G	T	2.660e^-4	0.863	DOWNSTREAM CalpA & 1 other INTRON CalpA
2R	17431616	2R_17431616_SNP [dm3] 2R_21544111_SNP [dm6]	C	T	2.662e^-4	0.863	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3L	2437872	3L_2437872_SNP [dm3] 3L_2437872_SNP [dm6]	C	T	2.665e^-4	0.863	INTRON CG45186	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	13895203	3R_13895203_SNP [dm3] 3R_18069481_SNP [dm6]	A	G	2.668e^-4	0.863	INTERGENIC
2L	4115997	2L_4115997_SNP [dm3] 2L_4115997_SNP [dm6]	T	G	2.670e^-4	0.863	DOWNSTREAM ed INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	2959339	X_2959339_SNP [dm3] X_3065306_SNP [dm6]	C	T	2.671e^-4	0.863	INTRON kirre
3L	8764229	3L_8764229_SNP [dm3] 3L_8771129_SNP [dm6]	C	G	2.672e^-4	0.863	INTRON Fhos
3L	22365937	3L_22365937_SNP [dm3] 3L_22372837_SNP [dm6]	G	T	2.674e^-4	0.863	INTRON Ten-m	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	13895201	3R_13895201_SNP [dm3] 3R_18069479_SNP [dm6]	T	A	2.680e^-4	0.863	INTERGENIC
3L	3181887	3L_3181887_SNP [dm3] 3L_3181887_SNP [dm6]	A	G	2.682e^-4	0.863	SYNONYMOUS_CODING Girdin
2R	6792945	2R_6792945_SNP [dm3] 2R_10905440_SNP [dm6]	T	G	2.683e^-4	0.863	SYNONYMOUS_CODING CG12943 UTR_3_PRIME CG12943
3L	7754929	3L_7754929_SNP [dm3] 3L_7761829_SNP [dm6]	G	A	2.687e^-4	0.863	SYNONYMOUS_CODING Hn START_GAINED Hn UTR_5_PRIME Hn
X	3713612	X_3713612_SNP [dm3] X_3819579_SNP [dm6]	T	A	2.704e^-4	0.863	UPSTREAM tRNA:CR32785 INTRON ec
3L	4659122	3L_4659122_INS [dm3] 3L_4659122_INS [dm6]	A	TTG	2.704e^-4	0.863	INTRON axo
2R	20256904	2R_20256904_SNP [dm3] 2R_24369381_SNP [dm6]	A	C	2.706e^-4	0.863	INTRON bs & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	16338419	2L_16338419_SNP [dm3] 2L_16338419_SNP [dm6]	A	T	2.716e^-4	0.863	SYNONYMOUS_CODING CG42266 UPSTREAM CG31817	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12046956	3L_12046956_SNP [dm3] 3L_12053856_SNP [dm6]	T	A	2.716e^-4	0.863	INTRON rols	silencer mE1_HDAC_PRE
2L	2795664	2L_2795664_SNP [dm3] 2L_2795664_SNP [dm6]	T	A	2.721e^-4	0.863	UPSTREAM Syt1 INTRON Syt1
2R	17339230	2R_17339230_INS [dm3] 2R_21451725_INS [dm6]	A	AT	2.722e^-4	0.863	INTRON Sdc
3L	1446794	3L_1446794_SNP [dm3] 3L_1446794_SNP [dm6]	T	A	2.726e^-4	0.863	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1446796	3L_1446796_INS [dm3] 3L_1446796_INS [dm6]	AA	GGTATCCCGT	2.726e^-4	0.863	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1446799	3L_1446799_SNP [dm3] 3L_1446799_SNP [dm6]	C	T	2.726e^-4	0.863	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1446802	3L_1446802_SNP [dm3] 3L_1446802_SNP [dm6]	A	T	2.726e^-4	0.863	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	7947267	3R_7947267_SNP [dm3] 3R_12121545_SNP [dm6]	C	A	2.730e^-4	0.863	DOWNSTREAM CG4702 INTERGENIC	TF binding site BDTNP1_TFBS_ftz
2L	4250904	2L_4250904_SNP [dm3] 2L_4250904_SNP [dm6]	A	T	2.735e^-4	0.863	INTERGENIC	TF binding site mE1_TFBS_inv
3L	1447133	3L_1447133_INS [dm3] 3L_1447133_INS [dm6]	G	GTCGG	2.737e^-4	0.863	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9333421	2R_9333421_SNP [dm3] 2R_13445916_SNP [dm6]	C	T	2.744e^-4	0.863	SYNONYMOUS_CODING CG30062 UPSTREAM cnn INTRON cnn	TF binding site mE1_TFBS_HSA
2R	15188954	2R_15188954_SNP [dm3] 2R_19301449_SNP [dm6]	A	T	2.752e^-4	0.863	INTRON Tab2	TF binding site mE1_TFBS_inv
3R	14363113	3R_14363113_SNP [dm3] 3R_18537391_SNP [dm6]	T	C	2.760e^-4	0.863	INTRON fru
3R	5114847	3R_5114847_SNP [dm3] 3R_9289125_SNP [dm6]	T	A	2.764e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_sna
3L	2653352	3L_2653352_SNP [dm3] 3L_2653352_SNP [dm6]	C	T	2.771e^-4	0.863	UTR_5_PRIME CG42304 UTR_3_PRIME Snup
3R	20309996	3R_20309996_SNP [dm3] 3R_24484274_SNP [dm6]	T	A	2.782e^-4	0.863	INTERGENIC
2L	9148671	2L_9148671_SNP [dm3] 2L_9148671_SNP [dm6]	A	T	2.787e^-4	0.863	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20934671	3R_20934671_SNP [dm3] 3R_25108949_SNP [dm6]	G	A	2.792e^-4	0.863	SYNONYMOUS_CODING CG34027 DOWNSTREAM CG13650
3R	6629658	3R_6629658_SNP [dm3] 3R_10803936_SNP [dm6]	G	T	2.793e^-4	0.863	UPSTREAM CG14692 INTERGENIC
2R	10807657	2R_10807657_DEL [dm3] 2R_14920152_DEL [dm6]	CAT	C	2.809e^-4	0.863	INTRON CG10249	TF binding site mE1_TFBS_cnc
2L	14434437	2L_14434437_SNP [dm3] 2L_14434437_SNP [dm6]	G	C	2.815e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	16381130	2R_16381130_SNP [dm3] 2R_20493625_SNP [dm6]	G	C	2.818e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	365892	2L_365892_SNP [dm3] 2L_365892_SNP [dm6]	C	T	2.819e^-4	0.863	INTERGENIC
2L	366797	2L_366797_INS [dm3] 2L_366797_INS [dm6]	T	GC	2.819e^-4	0.863	INTERGENIC
2L	366799	2L_366799_SNP [dm3] 2L_366799_SNP [dm6]	G	C	2.819e^-4	0.863	INTERGENIC
3L	7003638	3L_7003638_SNP [dm3] 3L_7010538_SNP [dm6]	C	G	2.822e^-4	0.863	INTRON Mp
X	3030434	X_3030434_SNP [dm3] X_3136401_SNP [dm6]	T	C	2.834e^-4	0.863	INTRON N	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	20006295	2R_20006295_SNP [dm3] 2R_24118772_SNP [dm6]	T	C	2.835e^-4	0.863	INTRON CG3257	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	4025597	3L_4025597_SNP [dm3] 3L_4025597_SNP [dm6]	T	C	2.837e^-4	0.863	UTR_5_PRIME CG11594 UPSTREAM CG11594 INTRON CG11594
3L	11835491	3L_11835491_SNP [dm3] 3L_11842391_SNP [dm6]	T	G	2.844e^-4	0.863	INTERGENIC
3R	5480312	3R_5480312_SNP [dm3] 3R_9654590_SNP [dm6]	G	A	2.846e^-4	0.863	SYNONYMOUS_CODING CG9492	TF binding site mE1_TFBS_chinmo
3L	6020429	3L_6020429_SNP [dm3] 3L_6027329_SNP [dm6]	G	C	2.846e^-4	0.863	INTERGENIC
3L	19133921	3L_19133921_SNP [dm3] 3L_19140821_SNP [dm6]	T	C	2.849e^-4	0.863	DOWNSTREAM fz2 INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_run
3L	6724168	3L_6724168_SNP [dm3] 3L_6731068_SNP [dm6]	G	A	2.850e^-4	0.863	SYNONYMOUS_CODING dikar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4659246	3L_4659246_SNP [dm3] 3L_4659246_SNP [dm6]	A	C	2.855e^-4	0.863	INTRON axo
2R	16622889	2R_16622889_SNP [dm3] 2R_20735384_SNP [dm6]	C	T	2.861e^-4	0.863	INTRON dpr
3L	13395572	3L_13395572_SNP [dm3] 3L_13402472_SNP [dm6]	C	T	2.864e^-4	0.863	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	5666711	3L_5666711_SNP [dm3] 3L_5673611_SNP [dm6]	G	A	2.864e^-4	0.863	SYNONYMOUS_CODING sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11168103	2R_11168103_SNP [dm3] 2R_15280598_SNP [dm6]	C	T	2.878e^-4	0.863	INTRON Trpm
3L	7753937	3L_7753937_SNP [dm3] 3L_7760837_SNP [dm6]	T	A	2.883e^-4	0.863	UPSTREAM Hn INTRON Hn
3L	3369111	3L_3369111_SNP [dm3] 3L_3369111_SNP [dm6]	A	C	2.895e^-4	0.863	UPSTREAM Drs DOWNSTREAM kst INTERGENIC	regulatory region REDfly_CRMs
2R	18369069	2R_18369069_SNP [dm3] 2R_22481564_SNP [dm6]	A	C	2.896e^-4	0.863	INTRON CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6590256	3R_6590256_SNP [dm3] 3R_10764534_SNP [dm6]	G	A	2.896e^-4	0.863	NON_SYNONYMOUS_CODING Cap-H2
2R	4744948	2R_4744948_SNP [dm3] 2R_8857443_SNP [dm6]	T	A	2.899e^-4	0.863	INTERGENIC
2R	4744970	2R_4744970_SNP [dm3] 2R_8857465_SNP [dm6]	T	A	2.899e^-4	0.863	INTERGENIC
2L	4250874	2L_4250874_INS [dm3] 2L_4250874_INS [dm6]	A	ATGCAGCTTAAGTCGATTAA...	2.899e^-4	0.863	INTERGENIC	TF binding site mE1_TFBS_inv
3L	5377811	3L_5377811_SNP [dm3] 3L_5384711_SNP [dm6]	T	A	2.903e^-4	0.863	INTERGENIC
3R	23157751	3R_23157751_SNP [dm3] 3R_27332029_SNP [dm6]	A	G	2.914e^-4	0.863	INTERGENIC
2R	19428728	2R_19428728_SNP [dm3] 2R_23541205_SNP [dm6]	A	G	2.915e^-4	0.863	UPSTREAM ppk3 INTRON Gr59e	TF binding site mE1_TFBS_cad
2R	16989340	2R_16989340_SNP [dm3] 2R_21101835_SNP [dm6]	A	G	2.916e^-4	0.863	UPSTREAM ktub DOWNSTREAM CG34396 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	16989969	2R_16989969_DEL [dm3] 2R_21102464_DEL [dm6]	CC	C	2.916e^-4	0.863	UTR_5_PRIME ktub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	13156450	3L_13156450_SNP [dm3] 3L_13163350_SNP [dm6]	T	C	2.921e^-4	0.863	INTERGENIC
3R	21019939	3R_21019939_SNP [dm3] 3R_25194217_SNP [dm6]	T	C	2.948e^-4	0.863	UPSTREAM lobo INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
3L	18967062	3L_18967062_SNP [dm3] 3L_18973962_SNP [dm6]	A	G	2.951e^-4	0.863	INTERGENIC
2L	2649709	2L_2649709_SNP [dm3] 2L_2649709_SNP [dm6]	T	C	2.959e^-4	0.863	SYNONYMOUS_CODING CG33125 UTR_3_PRIME CG33125
3L	5754412	3L_5754412_SNP [dm3] 3L_5761312_SNP [dm6]	T	C	2.962e^-4	0.863	SYNONYMOUS_CODING Ubp64E DOWNSTREAM CG10576	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	3892159	2R_3892159_SNP [dm3] 2R_8004654_SNP [dm6]	G	A	2.967e^-4	0.863	UPSTREAM Odc1 INTERGENIC	TF binding site mE1_TFBS_cad
2R	6867137	2R_6867137_SNP [dm3] 2R_10979632_SNP [dm6]	T	A	2.970e^-4	0.863	UTR_3_PRIME luna
3L	19824811	3L_19824811_SNP [dm3] 3L_19831711_SNP [dm6]	A	G	2.972e^-4	0.863	UTR_3_PRIME trc	TF binding site mE1_TFBS_inv
3L	17937918	3L_17937918_SNP [dm3] 3L_17944818_SNP [dm6]	G	T	2.978e^-4	0.863	INTRON CG43174
X	17325410	X_17325410_SNP [dm3] X_17431377_SNP [dm6]	A	G	2.978e^-4	0.863	INTRON CG12994
2L	5879960	2L_5879960_SNP [dm3] 2L_5879960_SNP [dm6]	T	A	2.978e^-4	0.863	UPSTREAM rau INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	16563522	3L_16563522_SNP [dm3] 3L_16570422_SNP [dm6]	G	T	2.989e^-4	0.863	INTRON Mipp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17864733	2R_17864733_SNP [dm3] 2R_21977228_SNP [dm6]	A	G	3.008e^-4	0.863	SYNONYMOUS_CODING Gr58c DOWNSTREAM CG9304 & 1 other	TF binding site mE1_TFBS_sens
3L	18423301	3L_18423301_SNP [dm3] 3L_18430201_SNP [dm6]	T	A	3.009e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18423302	3L_18423302_SNP [dm3] 3L_18430202_SNP [dm6]	T	C	3.009e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6334419	2R_6334419_SNP [dm3] 2R_10446914_SNP [dm6]	A	T	3.011e^-4	0.863	INTRON Galphao
3L	16745498	3L_16745498_SNP [dm3] 3L_16752398_SNP [dm6]	T	A	3.013e^-4	0.863	INTERGENIC
3L	12348915	3L_12348915_SNP [dm3] 3L_12355815_SNP [dm6]	C	T	3.014e^-4	0.863	INTERGENIC
2R	18373292	2R_18373292_SNP [dm3] 2R_22485787_SNP [dm6]	G	A	3.020e^-4	0.863	SYNONYMOUS_CODING CG4554
2R	18373370	2R_18373370_SNP [dm3] 2R_22485865_SNP [dm6]	G	A	3.020e^-4	0.863	SYNONYMOUS_CODING CG4554
3L	3009306	3L_3009306_SNP [dm3] 3L_3009306_SNP [dm6]	T	C	3.024e^-4	0.863	SYNONYMOUS_CODING FMRFaR	TF binding site mE1_TFBS_cad
3L	8765226	3L_8765226_SNP [dm3] 3L_8772126_SNP [dm6]	C	A	3.028e^-4	0.863	INTRON Fhos
3L	6695977	3L_6695977_SNP [dm3] 3L_6702877_SNP [dm6]	C	A	3.029e^-4	0.863	UTR_5_PRIME SP1173 INTRON SP1173	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9169547	2R_9169547_SNP [dm3] 2R_13282042_SNP [dm6]	A	C	3.039e^-4	0.863	INTRON Dh31-R
3L	3522789	3L_3522789_SNP [dm3] 3L_3522789_SNP [dm6]	T	A	3.053e^-4	0.863	DOWNSTREAM CR45043 INTRON Eip63E
3L	7810506	3L_7810506_SNP [dm3] 3L_7817406_SNP [dm6]	C	T	3.056e^-4	0.863	INTRON Pdp1	TF binding site mE1_TFBS_cad
3L	5669396	3L_5669396_SNP [dm3] 3L_5676296_SNP [dm6]	G	C	3.058e^-4	0.863	SYNONYMOUS_CODING sif
3L	2985109	3L_2985109_SNP [dm3] 3L_2985109_SNP [dm6]	C	T	3.059e^-4	0.863	INTERGENIC
X	7247206	X_7247206_SNP [dm3] X_7353173_SNP [dm6]	C	G	3.062e^-4	0.863	INTRON CR44357 & 1 other
3R	25798771	3R_25798771_SNP [dm3] 3R_29973049_SNP [dm6]	G	A	3.064e^-4	0.863	INTERGENIC
3R	26982574	3R_26982574_SNP [dm3] 3R_31156852_SNP [dm6]	C	G	3.065e^-4	0.863	INTRON Gycbeta100B
2R	10380209	2R_10380209_SNP [dm3] 2R_14492704_SNP [dm6]	C	G	3.067e^-4	0.863	INTRON L	TF binding site mE1_TFBS_cad
3L	16324501	3L_16324501_SNP [dm3] 3L_16331401_SNP [dm6]	C	T	3.067e^-4	0.863	UTR_5_PRIME CG33060 UPSTREAM retinin DOWNSTREAM CG33061	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11664253	3L_11664253_SNP [dm3] 3L_11671153_SNP [dm6]	T	C	3.068e^-4	0.863	INTRON CG32085
3L	17882620	3L_17882620_SNP [dm3] 3L_17889520_SNP [dm6]	T	A	3.085e^-4	0.863	SPLICE_SITE_REGION CG7402 INTRON CG7402
2R	6542645	2R_6542645_SNP [dm3] 2R_10655140_SNP [dm6]	T	A	3.090e^-4	0.863	INTERGENIC
3L	19688061	3L_19688061_SNP [dm3] 3L_19694961_SNP [dm6]	C	T	3.090e^-4	0.863	INTRON verm
3R	27409734	3R_27409734_SNP [dm3] 3R_31584012_SNP [dm6]	A	C	3.093e^-4	0.863	NON_SYNONYMOUS_CODING rod
2R	8943727	2R_8943727_SNP [dm3] 2R_13056222_SNP [dm6]	G	T	3.095e^-4	0.863	UTR_3_PRIME Drl-2 DOWNSTREAM Drl-2
3R	6591817	3R_6591817_SNP [dm3] 3R_10766095_SNP [dm6]	T	G	3.095e^-4	0.863	SYNONYMOUS_CODING Cap-H2 UTR_3_PRIME Cap-H2 DOWNSTREAM TfIIFbeta
3R	6591819	3R_6591819_SNP [dm3] 3R_10766097_SNP [dm6]	G	A	3.095e^-4	0.863	NON_SYNONYMOUS_CODING Cap-H2 UTR_3_PRIME Cap-H2 DOWNSTREAM TfIIFbeta
3R	19211466	3R_19211466_SNP [dm3] 3R_23385744_SNP [dm6]	C	A	3.096e^-4	0.863	UPSTREAM CG4393 INTERGENIC
2R	20518050	2R_20518050_SNP [dm3] 2R_24630527_SNP [dm6]	A	T	3.119e^-4	0.863	UPSTREAM Cyp9c1 DOWNSTREAM CR43787 INTRON CG13594
3R	15453806	3R_15453806_SNP [dm3] 3R_19628084_SNP [dm6]	A	G	3.128e^-4	0.863	UPSTREAM CG6231 INTRON CG6231	TF binding site BDTNP1_TFBS_dl
X	2713518	X_2713518_SNP [dm3] X_2819485_SNP [dm6]	C	G	3.140e^-4	0.863	INTRON kirre
2L	7151259	2L_7151259_SNP [dm3] 2L_7151259_SNP [dm6]	G	T	3.143e^-4	0.863	INTRON Pvf3
2L	12274178	2L_12274178_SNP [dm3] 2L_12274178_SNP [dm6]	C	T	3.148e^-4	0.863	INTRON aret
3L	12049078	3L_12049078_SNP [dm3] 3L_12055978_SNP [dm6]	G	A	3.150e^-4	0.863	UTR_5_PRIME rols INTRON rols	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	17955191	3L_17955191_SNP [dm3] 3L_17962091_SNP [dm6]	T	C	3.153e^-4	0.863	UPSTREAM Eip75B INTRON Eip75B
3L	6535431	3L_6535431_SNP [dm3] 3L_6542331_SNP [dm6]	C	T	3.160e^-4	0.863	INTRON sfl
3L	2985143	3L_2985143_SNP [dm3] 3L_2985143_SNP [dm6]	G	A	3.163e^-4	0.863	INTERGENIC
3L	1957981	3L_1957981_SNP [dm3] 3L_1957981_SNP [dm6]	T	C	3.167e^-4	0.863	INTRON mv	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1957982	3L_1957982_SNP [dm3] 3L_1957982_SNP [dm6]	A	C	3.167e^-4	0.863	INTRON mv	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17730773	2R_17730773_SNP [dm3] 2R_21843268_SNP [dm6]	C	T	3.169e^-4	0.863	UPSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	11304715	2R_11304715_SNP [dm3] 2R_15417210_SNP [dm6]	A	C	3.173e^-4	0.863	INTRON CG43729
2R	11304730	2R_11304730_SNP [dm3] 2R_15417225_SNP [dm6]	T	A	3.173e^-4	0.863	INTRON CG43729
2R	11304731	2R_11304731_SNP [dm3] 2R_15417226_SNP [dm6]	A	T	3.173e^-4	0.863	INTRON CG43729
2R	11304743	2R_11304743_SNP [dm3] 2R_15417238_SNP [dm6]	A	C	3.173e^-4	0.863	INTRON CG43729
2R	11304747	2R_11304747_SNP [dm3] 2R_15417242_SNP [dm6]	T	A	3.173e^-4	0.863	INTRON CG43729
2L	12126480	2L_12126480_SNP [dm3] 2L_12126480_SNP [dm6]	G	A	3.174e^-4	0.863	SYNONYMOUS_CODING CG17211
3L	12847405	3L_12847405_SNP [dm3] 3L_12854305_SNP [dm6]	T	A	3.178e^-4	0.863	INTRON Ent3
2L	11119028	2L_11119028_SNP [dm3] 2L_11119028_SNP [dm6]	C	T	3.200e^-4	0.863	NON_SYNONYMOUS_CODING CG6230	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	7953618	3R_7953618_SNP [dm3] 3R_12127896_SNP [dm6]	A	G	3.204e^-4	0.863	UTR_5_PRIME CG4702	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	15292463	2R_15292463_SNP [dm3] 2R_19404958_SNP [dm6]	G	A	3.208e^-4	0.863	SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16989222	2R_16989222_SNP [dm3] 2R_21101717_SNP [dm6]	G	A	3.209e^-4	0.863	UPSTREAM ktub DOWNSTREAM CG34396 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	18202217	3L_18202217_SNP [dm3] 3L_18209117_SNP [dm6]	G	A	3.222e^-4	0.863	INTERGENIC
2R	20216005	2R_20216005_SNP [dm3] 2R_24328482_SNP [dm6]	A	C	3.226e^-4	0.863	UPSTREAM CR44810 INTRON CR44810
3L	17937117	3L_17937117_SNP [dm3] 3L_17944017_SNP [dm6]	A	T	3.244e^-4	0.863	INTRON CG43174
X	4613495	X_4613495_SNP [dm3] X_4719462_SNP [dm6]	C	T	3.254e^-4	0.863	INTRON Proc-R
3L	12816300	3L_12816300_SNP [dm3] 3L_12823200_SNP [dm6]	T	G	3.255e^-4	0.863	NON_SYNONYMOUS_CODING CG42588
3R	14596825	3R_14596825_SNP [dm3] 3R_18771103_SNP [dm6]	G	C	3.256e^-4	0.863	INTRON CG7720
2R	16392366	2R_16392366_SNP [dm3] 2R_20504861_SNP [dm6]	C	A	3.257e^-4	0.863	UTR_3_PRIME Obp57b UPSTREAM Obp57a DOWNSTREAM Obp57c & 1 other	regulatory region REDfly_CRMs
3L	10286066	3L_10286066_SNP [dm3] 3L_10292966_SNP [dm6]	G	A	3.265e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9563296	3L_9563296_INS [dm3] 3L_9570196_INS [dm6]	C	CC	3.266e^-4	0.863	INTRON CG42673
3L	3368971	3L_3368971_SNP [dm3] 3L_3368971_SNP [dm6]	T	C	3.266e^-4	0.863	UPSTREAM Drs DOWNSTREAM kst INTERGENIC	regulatory region REDfly_CRMs
X	2995121	X_2995121_SNP [dm3] X_3101088_SNP [dm6]	A	G	3.268e^-4	0.863	INTRON kirre
3L	12121901	3L_12121901_SNP [dm3] 3L_12128801_SNP [dm6]	C	T	3.273e^-4	0.863	UPSTREAM Lsp2 DOWNSTREAM CG34241 INTERGENIC
3L	12122380	3L_12122380_SNP [dm3] 3L_12129280_SNP [dm6]	C	T	3.273e^-4	0.863	UPSTREAM Lsp2 DOWNSTREAM CG34241 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	521627	3L_521627_SNP [dm3] 3L_521627_SNP [dm6]	G	C	3.274e^-4	0.863	INTRON klar
X	3360169	X_3360169_SNP [dm3] X_3466136_SNP [dm6]	A	T	3.279e^-4	0.863	SYNONYMOUS_CODING CG12206 INTRON CR44999
3L	12047514	3L_12047514_SNP [dm3] 3L_12054414_SNP [dm6]	C	G	3.282e^-4	0.863	INTRON rols
3R	3821798	3R_3821798_SNP [dm3] 3R_7996076_SNP [dm6]	T	G	3.283e^-4	0.863	UPSTREAM CG2781 INTERGENIC
3L	3310191	3L_3310191_SNP [dm3] 3L_3310191_SNP [dm6]	A	T	3.299e^-4	0.863	INTRON ZnT63C
3L	17844213	3L_17844213_SNP [dm3] 3L_17851113_SNP [dm6]	C	A	3.300e^-4	0.863	SYNONYMOUS_CODING CG7441
3R	19049832	3R_19049832_SNP [dm3] 3R_23224110_SNP [dm6]	C	T	3.308e^-4	0.863	INTRON cnc
2R	18372522	2R_18372522_SNP [dm3] 2R_22485017_SNP [dm6]	T	A	3.308e^-4	0.863	NON_SYNONYMOUS_CODING CG4554
2R	18372533	2R_18372533_SNP [dm3] 2R_22485028_SNP [dm6]	A	C	3.308e^-4	0.863	SYNONYMOUS_CODING CG4554
2L	19330004	2L_19330004_SNP [dm3] 2L_19330004_SNP [dm6]	T	G	3.309e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19330062	2L_19330062_SNP [dm3] 2L_19330062_SNP [dm6]	A	G	3.309e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16457367	2R_16457367_SNP [dm3] 2R_20569862_SNP [dm6]	C	T	3.309e^-4	0.863	INTRON qsm	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6724144	3L_6724144_SNP [dm3] 3L_6731044_SNP [dm6]	C	T	3.310e^-4	0.863	SYNONYMOUS_CODING dikar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	1466219	X_1466219_INS [dm3] X_1572186_INS [dm6]	T	TT	3.316e^-4	0.863	INTRON Mur2B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	5314367	3R_5314367_SNP [dm3] 3R_9488645_SNP [dm6]	C	T	3.337e^-4	0.863	INTRON CG16779	TF binding site BDTNP1_TFBS_dl
3L	8673479	3L_8673479_SNP [dm3] 3L_8680379_SNP [dm6]	T	G	3.338e^-4	0.863	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2R	16457372	2R_16457372_SNP [dm3] 2R_20569867_SNP [dm6]	A	C	3.353e^-4	0.863	INTRON qsm	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16457376	2R_16457376_MNP [dm3] 2R_20569871_MNP [dm6]	CAT	TTG	3.353e^-4	0.863	INTRON qsm	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17937657	2L_17937657_INS [dm3] 2L_17937657_INS [dm6]	T	TTATATATA	3.356e^-4	0.863	INTERGENIC
2R	14492556	2R_14492556_INS [dm3] 2R_18605051_INS [dm6]	T	TA	3.358e^-4	0.863	INTRON GEFmeso
2R	16992498	2R_16992498_SNP [dm3] 2R_21104993_SNP [dm6]	G	C	3.360e^-4	0.863	INTRON ktub	TF binding site mE1_TFBS_inv
3L	14109233	3L_14109233_DEL [dm3] 3L_14116133_DEL [dm6]	TT	T	3.369e^-4	0.863	INTRON Sox21b
3L	10914210	3L_10914210_SNP [dm3] 3L_10921110_SNP [dm6]	T	C	3.378e^-4	0.863	INTERGENIC
X	3342186	X_3342186_INS [dm3] X_3448153_INS [dm6]	T	TGTGT	3.381e^-4	0.863	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
X	20507419	X_20507419_INS [dm3] X_20636392_INS [dm6]	A	ATTATA	3.383e^-4	0.863	INTERGENIC
2R	5687582	2R_5687582_SNP [dm3] 2R_9800077_SNP [dm6]	A	G	3.391e^-4	0.863	INTRON CG1688
3L	15224108	3L_15224108_DEL [dm3] 3L_15231008_DEL [dm6]	GTTAGCTCGAGGGG...	G	3.396e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	15224128	3L_15224128_SNP [dm3] 3L_15231028_SNP [dm6]	T	C	3.396e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	17882595	3L_17882595_SNP [dm3] 3L_17889495_SNP [dm6]	C	T	3.400e^-4	0.863	INTRON CG7402
2R	6542586	2R_6542586_SNP [dm3] 2R_10655081_SNP [dm6]	C	T	3.402e^-4	0.863	INTERGENIC
2R	15085345	2R_15085345_SNP [dm3] 2R_19197840_SNP [dm6]	A	G	3.411e^-4	0.863	INTRON hppy
2R	15085352	2R_15085352_SNP [dm3] 2R_19197847_SNP [dm6]	A	C	3.411e^-4	0.863	INTRON hppy
3R	14258956	3R_14258956_SNP [dm3] 3R_18433234_SNP [dm6]	G	T	3.412e^-4	0.863	INTRON fru
3L	5661096	3L_5661096_SNP [dm3] 3L_5667996_SNP [dm6]	C	A	3.414e^-4	0.863	INTRON sif
3L	21150370	3L_21150370_SNP [dm3] 3L_21157270_SNP [dm6]	T	C	3.424e^-4	0.863	INTRON Ac78C
3L	12359148	3L_12359148_SNP [dm3] 3L_12366048_SNP [dm6]	T	C	3.426e^-4	0.863	INTERGENIC
3L	17883936	3L_17883936_SNP [dm3] 3L_17890836_SNP [dm6]	A	G	3.428e^-4	0.863	NON_SYNONYMOUS_CODING CG7402 DOWNSTREAM Tsp74F
3L	9286407	3L_9286407_DEL [dm3] 3L_9293307_DEL [dm6]	CG	C	3.430e^-4	0.863	INTERGENIC
3L	1446930	3L_1446930_SNP [dm3] 3L_1446930_SNP [dm6]	C	A	3.432e^-4	0.863	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	922703	2L_922703_DEL [dm3] 2L_922703_DEL [dm6]	TT	T	3.436e^-4	0.863	UPSTREAM CG4341 INTERGENIC
2L	4988723	2L_4988723_SNP [dm3] 2L_4988723_SNP [dm6]	T	C	3.447e^-4	0.864	INTRON CG34126
3L	6165045	3L_6165045_SNP [dm3] 3L_6171945_SNP [dm6]	T	A	3.450e^-4	0.864	INTRON CG10289	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11807626	2L_11807626_SNP [dm3] 2L_11807626_SNP [dm6]	G	C	3.469e^-4	0.865	INTRON crol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	14258930	3R_14258930_SNP [dm3] 3R_18433208_SNP [dm6]	C	T	3.479e^-4	0.865	INTRON fru
3L	19335893	3L_19335893_SNP [dm3] 3L_19342793_SNP [dm6]	C	A	3.504e^-4	0.865	UTR_3_PRIME CG32206
3L	7403883	3L_7403883_SNP [dm3] 3L_7410783_SNP [dm6]	A	T	3.509e^-4	0.865	INTERGENIC
X	2242717	X_2242717_SNP [dm3] X_2348684_SNP [dm6]	G	A	3.512e^-4	0.865	SYNONYMOUS_CODING ptr	TF binding site mE1_TFBS_chinmo
2L	19330005	2L_19330005_SNP [dm3] 2L_19330005_SNP [dm6]	C	T	3.524e^-4	0.865	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4659173	3L_4659173_SNP [dm3] 3L_4659173_SNP [dm6]	C	G	3.526e^-4	0.865	INTRON axo
2L	2969058	2L_2969058_SNP [dm3] 2L_2969058_SNP [dm6]	G	A	3.527e^-4	0.865	SYNONYMOUS_CODING Ts DOWNSTREAM Rbp9 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	16127412	3R_16127412_SNP [dm3] 3R_20301690_SNP [dm6]	C	T	3.541e^-4	0.865	UTR_3_PRIME cic DOWNSTREAM cic
3L	7648401	3L_7648401_SNP [dm3] 3L_7655301_SNP [dm6]	A	G	3.542e^-4	0.865	UPSTREAM CG7492 DOWNSTREAM Ank2 INTRON CG32373	TF binding site BDTNP1_TFBS_dl
3R	25331525	3R_25331525_SNP [dm3] 3R_29505803_SNP [dm6]	C	G	3.547e^-4	0.865	INTERGENIC
2R	8438940	2R_8438940_SNP [dm3] 2R_12551435_SNP [dm6]	T	A	3.549e^-4	0.865	INTRON fra
2R	8438944	2R_8438944_SNP [dm3] 2R_12551439_SNP [dm6]	G	C	3.549e^-4	0.865	INTRON fra
3L	19123570	3L_19123570_SNP [dm3] 3L_19130470_SNP [dm6]	G	A	3.555e^-4	0.865	UPSTREAM Spn75F INTRON CG14082
2R	13869910	2R_13869910_SNP [dm3] 2R_17982405_SNP [dm6]	A	G	3.556e^-4	0.865	INTRON dpr13
2L	22322677	2L_22322677_SNP [dm3] 2L_22322677_SNP [dm6]	G	A	3.556e^-4	0.865	INTRON CG17018
3L	8628847	3L_8628847_SNP [dm3] 3L_8635747_SNP [dm6]	T	G	3.567e^-4	0.865	SYNONYMOUS_CODING Zasp66 INTRON Zasp66
X	3360290	X_3360290_SNP [dm3] X_3466257_SNP [dm6]	T	G	3.569e^-4	0.865	INTRON CR44999 & 1 other
2R	436154	2R_436154_SNP [dm3] 2R_4548649_SNP [dm6]	G	A	3.570e^-4	0.865	INTRON Stlk	transposable element FlyBase
3L	7003726	3L_7003726_SNP [dm3] 3L_7010626_SNP [dm6]	G	C	3.581e^-4	0.865	INTRON Mp
2L	22335994	2L_22335994_SNP [dm3] 2L_22335994_SNP [dm6]	G	A	3.582e^-4	0.865	INTRON CG17018	transposable element FlyBase
2L	19326316	2L_19326316_SNP [dm3] 2L_19326316_SNP [dm6]	C	T	3.582e^-4	0.865	DOWNSTREAM CR45700 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	17844321	3L_17844321_SNP [dm3] 3L_17851221_SNP [dm6]	A	T	3.583e^-4	0.865	SYNONYMOUS_CODING CG7441
3R	25043448	3R_25043448_SNP [dm3] 3R_29217726_SNP [dm6]	T	A	3.584e^-4	0.865	DOWNSTREAM mir-996 INTRON CR31044 EXON CR31044	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	16949453	3L_16949453_INS [dm3] 3L_16956353_INS [dm6]	T	TT	3.585e^-4	0.865	INTRON Nc73EF	TF binding site BDTNP1_TFBS_dl
3R	26424237	3R_26424237_SNP [dm3] 3R_30598515_SNP [dm6]	T	G	3.587e^-4	0.865	SYNONYMOUS_CODING CG31019 INTRON CG2246	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	419303	3L_419303_SNP [dm3] 3L_419303_SNP [dm6]	A	T	3.602e^-4	0.865	INTERGENIC	TF binding site mE1_TFBS_sens
X	2219726	X_2219726_SNP [dm3] X_2325693_SNP [dm6]	T	G	3.602e^-4	0.865	UTR_5_PRIME CG14050 INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	19326395	2L_19326395_SNP [dm3] 2L_19326395_SNP [dm6]	G	T	3.607e^-4	0.865	UPSTREAM CR45258 DOWNSTREAM CR45700 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	11125617	3L_11125617_SNP [dm3] 3L_11132517_SNP [dm6]	A	G	3.609e^-4	0.865	UPSTREAM CG32074 INTRON CG42575
3L	17883987	3L_17883987_SNP [dm3] 3L_17890887_SNP [dm6]	C	G	3.612e^-4	0.865	NON_SYNONYMOUS_CODING CG7402 DOWNSTREAM Tsp74F
3L	2945452	3L_2945452_SNP [dm3] 3L_2945452_SNP [dm6]	G	A	3.624e^-4	0.865	UTR_3_PRIME Shab INTRON Shab
X	14762881	X_14762881_SNP [dm3] X_14868848_SNP [dm6]	T	C	3.627e^-4	0.865	INTRON Flo2 & 1 other
3R	17627674	3R_17627674_SNP [dm3] 3R_21801952_SNP [dm6]	G	C	3.629e^-4	0.865	INTRON CASK
2R	9394473	2R_9394473_SNP [dm3] 2R_13506968_SNP [dm6]	G	A	3.635e^-4	0.865	UPSTREAM EfTuM DOWNSTREAM mars INTRON mip120	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	4028346	3L_4028346_SNP [dm3] 3L_4028346_SNP [dm6]	A	C	3.641e^-4	0.865	UPSTREAM Gr64b & 1 other INTRON Gr64a	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	21278064	3L_21278064_SNP [dm3] 3L_21284964_SNP [dm6]	T	C	3.641e^-4	0.865	UTR_5_PRIME CG12974 INTRON CG12974	TF binding site BDTNP1_TFBS_dl
3L	21290777	3L_21290777_SNP [dm3] 3L_21297677_SNP [dm6]	C	T	3.641e^-4	0.865	UPSTREAM CG43702 DOWNSTREAM Cpr78Cb INTRON Edg78E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	21296526	3L_21296526_SNP [dm3] 3L_21303426_SNP [dm6]	G	T	3.641e^-4	0.865	NON_SYNONYMOUS_CODING CG11309	TF binding site mE1_TFBS_cad
2R	19022313	2R_19022313_SNP [dm3] 2R_23134790_SNP [dm6]	G	T	3.656e^-4	0.865	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	12874165	3L_12874165_SNP [dm3] 3L_12881065_SNP [dm6]	A	T	3.663e^-4	0.865	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	396455	3L_396455_SNP [dm3] 3L_396455_SNP [dm6]	A	C	3.667e^-4	0.865	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	18221648	2L_18221648_SNP [dm3] 2L_18221648_SNP [dm6]	C	T	3.670e^-4	0.865	INTRON CG42750
2L	3876905	2L_3876905_SNP [dm3] 2L_3876905_SNP [dm6]	T	C	3.674e^-4	0.865	INTRON capu
3R	18292082	3R_18292082_SNP [dm3] 3R_22466360_SNP [dm6]	C	T	3.688e^-4	0.865	SYNONYMOUS_CODING Pebp1 DOWNSTREAM CG5377 & 1 other	TF binding site mE1_TFBS_cad
3R	9399781	3R_9399781_SNP [dm3] 3R_13574059_SNP [dm6]	C	T	3.693e^-4	0.865	UPSTREAM CR43848 INTERGENIC
3L	15176422	3L_15176422_SNP [dm3] 3L_15183322_SNP [dm6]	G	T	3.699e^-4	0.865	INTERGENIC
3L	8445951	3L_8445951_SNP [dm3] 3L_8452851_SNP [dm6]	A	T	3.700e^-4	0.865	INTRON Gug	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	10197559	2R_10197559_INS [dm3] 2R_14310054_INS [dm6]	A	ATA	3.712e^-4	0.865	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
3R	25043444	3R_25043444_SNP [dm3] 3R_29217722_SNP [dm6]	A	G	3.718e^-4	0.865	DOWNSTREAM mir-996 INTRON CR31044 EXON CR31044	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_sens
3L	14528052	3L_14528052_SNP [dm3] 3L_14534952_SNP [dm6]	A	T	3.721e^-4	0.865	INTRON bbg
2R	16654310	2R_16654310_SNP [dm3] 2R_20766805_SNP [dm6]	G	T	3.727e^-4	0.865	DOWNSTREAM CR44665 EXON CR44665
2L	12961705	2L_12961705_DEL [dm3] 2L_12961705_DEL [dm6]	ACTTAGCAGCCAAATAAAA...	A	3.727e^-4	0.865	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15466046	3L_15466046_SNP [dm3] 3L_15472946_SNP [dm6]	G	A	3.731e^-4	0.865	SYNONYMOUS_CODING CG7804
3R	23340489	3R_23340489_SNP [dm3] 3R_27514767_SNP [dm6]	A	G	3.736e^-4	0.865	INTERGENIC
3R	14596808	3R_14596808_SNP [dm3] 3R_18771086_SNP [dm6]	G	A	3.745e^-4	0.865	INTRON CG7720
3R	21488838	3R_21488838_SNP [dm3] 3R_25663116_SNP [dm6]	G	C	3.757e^-4	0.865	UPSTREAM CR45208 INTRON RASSF8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	19223686	3L_19223686_SNP [dm3] 3L_19230586_SNP [dm6]	G	A	3.757e^-4	0.865	DOWNSTREAM CR43893 INTRON fz2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	18875119	3L_18875119_SNP [dm3] 3L_18882019_SNP [dm6]	C	T	3.758e^-4	0.865	INTRON CG3961
3L	21314671	3L_21314671_SNP [dm3] 3L_21321571_SNP [dm6]	C	A	3.770e^-4	0.865	UPSTREAM Rab26 INTRON Rab26	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	6178927	3R_6178927_SNP [dm3] 3R_10353205_SNP [dm6]	C	T	3.774e^-4	0.865	INTRON jumu	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	5317364	3R_5317364_SNP [dm3] 3R_9491642_SNP [dm6]	A	G	3.779e^-4	0.865	INTRON CG16779
3L	17772773	3L_17772773_SNP [dm3] 3L_17779673_SNP [dm6]	G	A	3.780e^-4	0.865	INTERGENIC
2R	19782614	2R_19782614_SNP [dm3] 2R_23895091_SNP [dm6]	G	T	3.785e^-4	0.865	START_GAINED CG17658 UTR_5_PRIME CG17658 UPSTREAM Upf3	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2R	19782620	2R_19782620_INS [dm3] 2R_23895097_INS [dm6]	C	CC	3.785e^-4	0.865	UTR_5_PRIME CG17658 UPSTREAM Upf3	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3L	12121624	3L_12121624_SNP [dm3] 3L_12128524_SNP [dm6]	T	G	3.787e^-4	0.865	UPSTREAM Lsp2 DOWNSTREAM CG34241 INTERGENIC
X	17445222	X_17445222_SNP [dm3] X_17551189_SNP [dm6]	A	C	3.790e^-4	0.865	INTRON CG43658
3L	19019030	3L_19019030_SNP [dm3] 3L_19025930_SNP [dm6]	C	T	3.793e^-4	0.865	INTRON nkd
3L	13837063	3L_13837063_SNP [dm3] 3L_13843963_SNP [dm6]	C	T	3.793e^-4	0.865	UPSTREAM CG8750 INTRON Tsp68C
3L	13837092	3L_13837092_SNP [dm3] 3L_13843992_SNP [dm6]	T	C	3.793e^-4	0.865	UPSTREAM CG8750 INTRON Tsp68C
3L	1887675	3L_1887675_SNP [dm3] 3L_1887675_SNP [dm6]	G	A	3.793e^-4	0.865	INTRON Tmhs	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3L	6027928	3L_6027928_SNP [dm3] 3L_6034828_SNP [dm6]	T	C	3.794e^-4	0.865	UPSTREAM yip7 & 1 other INTERGENIC
3L	1853061	3L_1853061_SNP [dm3] 3L_1853061_SNP [dm6]	G	T	3.798e^-4	0.865	INTRON CG13936
2L	12430752	2L_12430752_SNP [dm3] 2L_12430752_SNP [dm6]	T	C	3.807e^-4	0.865	SYNONYMOUS_CODING CG5435 DOWNSTREAM CG6388 & 1 other	TF binding site mE1_TFBS_cad
3L	13294528	3L_13294528_SNP [dm3] 3L_13301428_SNP [dm6]	A	C	3.812e^-4	0.865	UPSTREAM SP & 1 other INTERGENIC
3L	3892529	3L_3892529_SNP [dm3] 3L_3892529_SNP [dm6]	G	A	3.824e^-4	0.865	UPSTREAM Fie & 1 other DOWNSTREAM snRNA:U11 INTERGENIC
3L	12927335	3L_12927335_SNP [dm3] 3L_12934235_SNP [dm6]	C	A	3.824e^-4	0.865	INTERGENIC
3L	11108281	3L_11108281_SNP [dm3] 3L_11115181_SNP [dm6]	G	A	3.832e^-4	0.865	SYNONYMOUS_CODING fd68A
2R	18933322	2R_18933322_SNP [dm3] 2R_23045799_SNP [dm6]	A	T	3.834e^-4	0.865	UPSTREAM twi INTRON twi	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	15443096	2R_15443096_SNP [dm3] 2R_19555591_SNP [dm6]	T	C	3.835e^-4	0.865	INTRON sm	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	410194	3R_410194_SNP [dm3] 3R_4584472_SNP [dm6]	A	T	3.848e^-4	0.866	DOWNSTREAM CR45558 INTERGENIC
3R	11691632	3R_11691632_SNP [dm3] 3R_15865910_SNP [dm6]	T	C	3.849e^-4	0.866	INTRON CG31183
3R	7952905	3R_7952905_SNP [dm3] 3R_12127183_SNP [dm6]	G	T	3.852e^-4	0.866	INTRON CG4702
3R	26397972	3R_26397972_SNP [dm3] 3R_30572250_SNP [dm6]	C	T	3.855e^-4	0.866	SYNONYMOUS_CODING tmod
3L	4073915	3L_4073915_SNP [dm3] 3L_4073915_SNP [dm6]	G	A	3.866e^-4	0.866	UTR_5_PRIME Faa DOWNSTREAM Gad1	TF binding site mE1_TFBS_Trl
2R	10431042	2R_10431042_DEL [dm3] 2R_14543537_DEL [dm6]	TT	T	3.892e^-4	0.866	DOWNSTREAM CG30076 INTRON ttv
3L	8764226	3L_8764226_SNP [dm3] 3L_8771126_SNP [dm6]	G	A	3.895e^-4	0.866	INTRON Fhos
2R	8836210	2R_8836210_SNP [dm3] 2R_12948705_SNP [dm6]	A	C	3.903e^-4	0.866	SYNONYMOUS_CODING CG44251	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	4613494	X_4613494_SNP [dm3] X_4719461_SNP [dm6]	C	T	3.912e^-4	0.866	INTRON Proc-R
3R	10608326	3R_10608326_SNP [dm3] 3R_14782604_SNP [dm6]	T	C	3.912e^-4	0.866	INTRON jvl
3R	16533892	3R_16533892_SNP [dm3] 3R_20708170_SNP [dm6]	C	G	3.924e^-4	0.866	INTRON Oamb
3L	5697546	3L_5697546_SNP [dm3] 3L_5704446_SNP [dm6]	G	A	3.926e^-4	0.866	INTRON sif
3L	21328231	3L_21328231_SNP [dm3] 3L_21335131_SNP [dm6]	A	G	3.929e^-4	0.866	UPSTREAM CG7338 DOWNSTREAM Rab26 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn
3L	8443510	3L_8443510_SNP [dm3] 3L_8450410_SNP [dm6]	G	T	3.932e^-4	0.866	UTR_5_PRIME Gug UPSTREAM Gug	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2R	15991370	2R_15991370_SNP [dm3] 2R_20103865_SNP [dm6]	T	C	3.932e^-4	0.866	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
3L	17928418	3L_17928418_SNP [dm3] 3L_17935318_SNP [dm6]	C	T	3.941e^-4	0.866	SYNONYMOUS_CODING CG43173 INTRON CG43174
3R	7614125	3R_7614125_SNP [dm3] 3R_11788403_SNP [dm6]	C	T	3.942e^-4	0.866	STOP_GAINED HisCl1 DOWNSTREAM Sbf INTRON HisCl1
3L	15249834	3L_15249834_SNP [dm3] 3L_15256734_SNP [dm6]	A	G	3.943e^-4	0.866	INTERGENIC
2L	2186921	2L_2186921_SNP [dm3] 2L_2186921_SNP [dm6]	T	C	3.946e^-4	0.866	UPSTREAM tRNA:CR31946 DOWNSTREAM CR44066 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	9523928	3L_9523928_SNP [dm3] 3L_9530828_SNP [dm6]	A	T	3.949e^-4	0.866	SYNONYMOUS_CODING Or67a
3R	17199067	3R_17199067_SNP [dm3] 3R_21373345_SNP [dm6]	C	T	3.966e^-4	0.866	INTRON mod_mdg4_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	15285144	3L_15285144_SNP [dm3] 3L_15292044_SNP [dm6]	A	G	3.967e^-4	0.866	INTERGENIC
X	2220647	X_2220647_SNP [dm3] X_2326614_SNP [dm6]	G	A	3.967e^-4	0.866	UPSTREAM CG14050 & 1 other INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	5197558	X_5197558_SNP [dm3] X_5303525_SNP [dm6]	T	C	3.972e^-4	0.866	SYNONYMOUS_CODING CG3323 DOWNSTREAM CG42749 INTRON CG42749
2L	12945275	2L_12945275_SNP [dm3] 2L_12945275_SNP [dm6]	C	G	3.982e^-4	0.866	INTERGENIC
3L	11108673	3L_11108673_SNP [dm3] 3L_11115573_SNP [dm6]	A	G	3.983e^-4	0.866	SYNONYMOUS_CODING fd68A
3L	19428123	3L_19428123_SNP [dm3] 3L_19435023_SNP [dm6]	A	G	3.984e^-4	0.866	INTERGENIC
2L	19326341	2L_19326341_SNP [dm3] 2L_19326341_SNP [dm6]	G	C	4.000e^-4	0.866	DOWNSTREAM CR45700 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	19326353	2L_19326353_SNP [dm3] 2L_19326353_SNP [dm6]	G	A	4.000e^-4	0.866	DOWNSTREAM CR45700 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	19326378	2L_19326378_SNP [dm3] 2L_19326378_SNP [dm6]	T	C	4.000e^-4	0.866	UPSTREAM CR45258 DOWNSTREAM CR45700 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	19326380	2L_19326380_SNP [dm3] 2L_19326380_SNP [dm6]	G	A	4.000e^-4	0.866	UPSTREAM CR45258 DOWNSTREAM CR45700 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	19326390	2L_19326390_SNP [dm3] 2L_19326390_SNP [dm6]	G	A	4.000e^-4	0.866	UPSTREAM CR45258 DOWNSTREAM CR45700 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	1682411	3L_1682411_SNP [dm3] 3L_1682411_SNP [dm6]	C	T	4.003e^-4	0.866	INTRON CG7991
2L	9804540	2L_9804540_SNP [dm3] 2L_9804540_SNP [dm6]	G	C	4.006e^-4	0.866	INTRON nAChRalpha6
3R	10412343	3R_10412343_SNP [dm3] 3R_14586621_SNP [dm6]	G	T	4.006e^-4	0.866	INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10519779	3L_10519779_DEL [dm3] 3L_10526679_DEL [dm6]	ATGCCTCATGCCACATGCCC...	A	4.042e^-4	0.867	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4933836	2L_4933836_SNP [dm3] 2L_4933836_SNP [dm6]	G	A	4.042e^-4	0.867	SYNONYMOUS_CODING hoe2
3R	19226258	3R_19226258_SNP [dm3] 3R_23400536_SNP [dm6]	G	C	4.047e^-4	0.867	UPSTREAM CR44323 INTERGENIC
2R	6801181	2R_6801181_SNP [dm3] 2R_10913676_SNP [dm6]	C	A	4.054e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	21291838	3L_21291838_SNP [dm3] 3L_21298738_SNP [dm6]	A	G	4.061e^-4	0.867	UPSTREAM CG43702 & 1 other INTRON CG43702	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18942398	2R_18942398_SNP [dm3] 2R_23054875_SNP [dm6]	G	A	4.062e^-4	0.867	UPSTREAM CG44252 INTERGENIC
3L	4666362	3L_4666362_SNP [dm3] 3L_4666362_SNP [dm6]	A	G	4.066e^-4	0.867	SYNONYMOUS_CODING CG32236 INTRON axo
2R	7793562	2R_7793562_SNP [dm3] 2R_11906057_SNP [dm6]	A	G	4.072e^-4	0.867	INTRON CG13183
2R	18001532	2R_18001532_SNP [dm3] 2R_22114027_SNP [dm6]	T	C	4.078e^-4	0.867	SYNONYMOUS_CODING CG30280 UPSTREAM CG30281 INTRON Vrp1
3L	8447007	3L_8447007_SNP [dm3] 3L_8453907_SNP [dm6]	T	C	4.084e^-4	0.867	INTRON Gug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	9946544	3R_9946544_SNP [dm3] 3R_14120822_SNP [dm6]	T	C	4.085e^-4	0.867	INTRON Abi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26644444	3R_26644444_SNP [dm3] 3R_30818722_SNP [dm6]	G	A	4.095e^-4	0.867	INTRON cindr	TF binding site mE1_TFBS_sens mE1_TFBS_Trl
2L	15200422	2L_15200422_SNP [dm3] 2L_15200422_SNP [dm6]	T	G	4.107e^-4	0.867	UTR_5_PRIME CG4168
2L	16394582	2L_16394582_SNP [dm3] 2L_16394582_SNP [dm6]	C	T	4.110e^-4	0.867	INTERGENIC
3L	8759370	3L_8759370_SNP [dm3] 3L_8766270_SNP [dm6]	T	C	4.117e^-4	0.867	UPSTREAM Fhos INTRON Fhos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	3368951	3L_3368951_SNP [dm3] 3L_3368951_SNP [dm6]	C	T	4.117e^-4	0.867	UPSTREAM Drs DOWNSTREAM kst INTERGENIC	regulatory region REDfly_CRMs
3L	17976628	3L_17976628_SNP [dm3] 3L_17983528_SNP [dm6]	A	G	4.125e^-4	0.867	INTRON Eip75B
3R	7947259	3R_7947259_INS [dm3] 3R_12121537_INS [dm6]	A	AT	4.130e^-4	0.867	DOWNSTREAM CG4702 INTERGENIC	TF binding site BDTNP1_TFBS_ftz
2L	19261568	2L_19261568_SNP [dm3] 2L_19261568_SNP [dm6]	T	G	4.139e^-4	0.867	NON_SYNONYMOUS_CODING CG31797 UPSTREAM CR44191	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10289739	3R_10289739_SNP [dm3] 3R_14464017_SNP [dm6]	T	C	4.142e^-4	0.867	INTRON cv-c
3L	21261080	3L_21261080_SNP [dm3] 3L_21267980_SNP [dm6]	A	T	4.144e^-4	0.867	UPSTREAM CR45162 & 1 other DOWNSTREAM CG9389 INTRON CG9391	TF binding site mE1_TFBS_cad
3R	6548240	3R_6548240_SNP [dm3] 3R_10722518_SNP [dm6]	A	C	4.159e^-4	0.867	INTERGENIC
2L	12963513	2L_12963513_SNP [dm3] 2L_12963513_SNP [dm6]	G	A	4.168e^-4	0.867	INTERGENIC
3L	12127097	3L_12127097_SNP [dm3] 3L_12133997_SNP [dm6]	T	A	4.169e^-4	0.867	NON_SYNONYMOUS_CODING CG5645 DOWNSTREAM CG11534	TF binding site BDTNP1_TFBS_twi
3L	13817369	3L_13817369_SNP [dm3] 3L_13824269_SNP [dm6]	A	T	4.171e^-4	0.867	INTERGENIC
3L	1887706	3L_1887706_SNP [dm3] 3L_1887706_SNP [dm6]	C	T	4.171e^-4	0.867	INTRON Tmhs	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3L	12943912	3L_12943912_SNP [dm3] 3L_12950812_SNP [dm6]	G	A	4.175e^-4	0.867	INTERGENIC
3R	21705009	3R_21705009_SNP [dm3] 3R_25879287_SNP [dm6]	T	C	4.194e^-4	0.867	INTRON Tsp96F
2R	16566417	2R_16566417_SNP [dm3] 2R_20678912_SNP [dm6]	T	G	4.202e^-4	0.867	INTERGENIC
3L	13277167	3L_13277167_SNP [dm3] 3L_13284067_SNP [dm6]	C	G	4.206e^-4	0.867	DOWNSTREAM CR43146 INTRON CR43913 EXON CR43913
3L	12132996	3L_12132996_SNP [dm3] 3L_12139896_SNP [dm6]	T	G	4.207e^-4	0.867	INTRON RhoGAP68F
3R	26428310	3R_26428310_SNP [dm3] 3R_30602588_SNP [dm6]	G	A	4.217e^-4	0.867	SYNONYMOUS_CODING CG31021	TF binding site mE1_TFBS_HSA
3R	18620835	3R_18620835_SNP [dm3] 3R_22795113_SNP [dm6]	A	T	4.222e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	8561060	2R_8561060_SNP [dm3] 2R_12673555_SNP [dm6]	G	A	4.233e^-4	0.867	INTRON CG42708	TF binding site mE1_TFBS_cad
3L	21265313	3L_21265313_SNP [dm3] 3L_21272213_SNP [dm6]	C	T	4.238e^-4	0.867	INTRON AcCoAS
3R	9395976	3R_9395976_SNP [dm3] 3R_13570254_SNP [dm6]	A	T	4.241e^-4	0.867	INTERGENIC
3R	9395993	3R_9395993_SNP [dm3] 3R_13570271_SNP [dm6]	A	T	4.241e^-4	0.867	INTERGENIC
2L	15200433	2L_15200433_SNP [dm3] 2L_15200433_SNP [dm6]	T	C	4.246e^-4	0.867	UTR_5_PRIME CG4168
3L	2985085	3L_2985085_SNP [dm3] 3L_2985085_SNP [dm6]	G	C	4.247e^-4	0.867	INTERGENIC
2L	22434880	2L_22434880_SNP [dm3] 2L_22542148_SNP [dm6]	A	G	4.250e^-4	0.867	DOWNSTREAM CG17490 INTRON CG17490
3L	11267312	3L_11267312_SNP [dm3] 3L_11274212_SNP [dm6]	C	G	4.257e^-4	0.867	EXON CR44720	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	4331156	3R_4331156_SNP [dm3] 3R_8505434_SNP [dm6]	A	G	4.260e^-4	0.867	INTERGENIC
3R	27252656	3R_27252656_DEL [dm3] 3R_31426934_DEL [dm6]	TCTTGTATTACTAGAGTAAA...	T	4.260e^-4	0.867	INTRON Gprk2
X	3713531	X_3713531_SNP [dm3] X_3819498_SNP [dm6]	C	A	4.267e^-4	0.867	UPSTREAM tRNA:CR32785 INTRON ec
2L	1107120	2L_1107120_SNP [dm3] 2L_1107120_SNP [dm6]	C	T	4.273e^-4	0.867	INTRON mtRNApol	TF binding site mE1_TFBS_sens
2R	9771084	2R_9771084_SNP [dm3] 2R_13883579_SNP [dm6]	C	T	4.287e^-4	0.867	INTRON shot
2L	11907282	2L_11907282_SNP [dm3] 2L_11907282_SNP [dm6]	A	T	4.302e^-4	0.867	INTRON Pde1c
2R	1674113	2R_1674113_INS [dm3] 2R_5786608_INS [dm6]	A	TAG	4.302e^-4	0.867	INTERGENIC
2R	20518051	2R_20518051_SNP [dm3] 2R_24630528_SNP [dm6]	C	T	4.308e^-4	0.867	UPSTREAM Cyp9c1 DOWNSTREAM CR43787 INTRON CG13594
3L	396468	3L_396468_SNP [dm3] 3L_396468_SNP [dm6]	A	G	4.310e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	4250919	2L_4250919_DEL [dm3] 2L_4250919_DEL [dm6]	ATT	G	4.313e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_inv
X	5000133	X_5000133_SNP [dm3] X_5106100_SNP [dm6]	T	A	4.318e^-4	0.867	INTRON rg & 1 other
2R	15294716	2R_15294716_SNP [dm3] 2R_19407211_SNP [dm6]	C	T	4.322e^-4	0.867	INTRON hts
2R	15294725	2R_15294725_SNP [dm3] 2R_19407220_SNP [dm6]	T	C	4.322e^-4	0.867	INTRON hts
3L	17937594	3L_17937594_SNP [dm3] 3L_17944494_SNP [dm6]	T	C	4.328e^-4	0.867	INTRON CG43174
3L	12132415	3L_12132415_INS [dm3] 3L_12139315_INS [dm6]	G	GGCAAAAAAAGGAGACACTA...	4.332e^-4	0.867	UPSTREAM l_3_neo18 INTRON RhoGAP68F	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
3R	22031809	3R_22031809_SNP [dm3] 3R_26206087_SNP [dm6]	C	T	4.333e^-4	0.867	INTRON CR44320
2R	12022232	2R_12022232_DEL [dm3] 2R_16134727_DEL [dm6]	AA	A	4.334e^-4	0.867	INTRON spin
3R	4073521	3R_4073521_SNP [dm3] 3R_8247799_SNP [dm6]	T	C	4.339e^-4	0.867	UTR_3_PRIME CG33722 & 1 other UPSTREAM CG15864	TF binding site mE1_TFBS_HSA
2R	14755195	2R_14755195_SNP [dm3] 2R_18867690_SNP [dm6]	G	T	4.352e^-4	0.867	SYNONYMOUS_CODING DptB DOWNSTREAM CG43109
2L	1935113	2L_1935113_SNP [dm3] 2L_1935113_SNP [dm6]	C	T	4.366e^-4	0.867	SYNONYMOUS_CODING CG7337	TF binding site mE1_TFBS_cad
3R	19224850	3R_19224850_SNP [dm3] 3R_23399128_SNP [dm6]	G	A	4.373e^-4	0.867	DOWNSTREAM CR44323 INTERGENIC
3R	19224863	3R_19224863_SNP [dm3] 3R_23399141_SNP [dm6]	T	C	4.373e^-4	0.867	DOWNSTREAM CR44323 INTERGENIC
2L	16323288	2L_16323288_SNP [dm3] 2L_16323288_SNP [dm6]	T	G	4.375e^-4	0.867	INTRON cact	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	17884455	3L_17884455_SNP [dm3] 3L_17891355_SNP [dm6]	C	T	4.378e^-4	0.867	UTR_3_PRIME CG7402 DOWNSTREAM Tsp74F
3L	17884493	3L_17884493_SNP [dm3] 3L_17891393_SNP [dm6]	A	T	4.378e^-4	0.867	UTR_3_PRIME CG7402 DOWNSTREAM Tsp74F
X	18159946	X_18159946_SNP [dm3] X_18265913_SNP [dm6]	A	T	4.379e^-4	0.867	INTERGENIC
3R	14599465	3R_14599465_SNP [dm3] 3R_18773743_SNP [dm6]	C	T	4.381e^-4	0.867	INTRON CG7720
3L	11109054	3L_11109054_SNP [dm3] 3L_11115954_SNP [dm6]	G	A	4.387e^-4	0.867	SYNONYMOUS_CODING fd68A
3R	4965141	3R_4965141_SNP [dm3] 3R_9139419_SNP [dm6]	C	T	4.408e^-4	0.867	INTRON pum
2L	16394488	2L_16394488_SNP [dm3] 2L_16394488_SNP [dm6]	A	G	4.408e^-4	0.867	INTERGENIC
3L	395440	3L_395440_SNP [dm3] 3L_395440_SNP [dm6]	A	G	4.417e^-4	0.867	INTERGENIC	regulatory region REDfly_CRMs
3L	5889346	3L_5889346_SNP [dm3] 3L_5896246_SNP [dm6]	G	A	4.426e^-4	0.867	SYNONYMOUS_CODING Pole2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	9661554	2R_9661554_SNP [dm3] 2R_13774049_SNP [dm6]	A	G	4.430e^-4	0.867	INTRON Cpr50Ca	TF binding site mE1_TFBS_inv
2R	15317315	2R_15317315_SNP [dm3] 2R_19429810_SNP [dm6]	G	T	4.434e^-4	0.867	DOWNSTREAM CalpA & 1 other INTRON CalpA
3L	15228422	3L_15228422_DEL [dm3] 3L_15235322_DEL [dm6]	TTT	T	4.436e^-4	0.867	UPSTREAM Tollo INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
3L	15681002	3L_15681002_SNP [dm3] 3L_15687902_SNP [dm6]	C	G	4.443e^-4	0.867	UTR_5_PRIME CG34452 UPSTREAM CG34452 DOWNSTREAM CG34451	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_twi
2R	16457371	2R_16457371_SNP [dm3] 2R_20569866_SNP [dm6]	A	G	4.446e^-4	0.867	INTRON qsm	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
X	19496919	X_19496919_SNP [dm3] X_19602886_SNP [dm6]	G	T	4.447e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	6475698	X_6475698_SNP [dm3] X_6581665_SNP [dm6]	C	T	4.450e^-4	0.867	SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	22322197	2L_22322197_SNP [dm3] 2L_22322197_SNP [dm6]	A	G	4.450e^-4	0.867	INTRON CG17018
2L	9147760	2L_9147760_SNP [dm3] 2L_9147760_SNP [dm6]	T	C	4.453e^-4	0.867	INTRON CG32982	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	25364661	3R_25364661_SNP [dm3] 3R_29538939_SNP [dm6]	G	A	4.453e^-4	0.867	INTERGENIC
3L	4659308	3L_4659308_SNP [dm3] 3L_4659308_SNP [dm6]	T	A	4.461e^-4	0.867	INTRON axo
X	15552573	X_15552573_SNP [dm3] X_15658540_SNP [dm6]	T	C	4.465e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_Kr
3L	16563609	3L_16563609_SNP [dm3] 3L_16570509_SNP [dm6]	A	G	4.466e^-4	0.867	INTRON Mipp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1283068	3L_1283068_SNP [dm3] 3L_1283068_SNP [dm6]	C	T	4.468e^-4	0.867	INTRON CG32333
3L	10520272	3L_10520272_SNP [dm3] 3L_10527172_SNP [dm6]	G	C	4.469e^-4	0.867	INTRON A2bp1
3L	10520274	3L_10520274_SNP [dm3] 3L_10527174_SNP [dm6]	A	T	4.469e^-4	0.867	INTRON A2bp1
3L	10520275	3L_10520275_SNP [dm3] 3L_10527175_SNP [dm6]	C	A	4.469e^-4	0.867	INTRON A2bp1
2R	10197190	2R_10197190_SNP [dm3] 2R_14309685_SNP [dm6]	G	A	4.472e^-4	0.867	INTRON Shroom	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
3L	21338536	3L_21338536_SNP [dm3] 3L_21345436_SNP [dm6]	T	C	4.480e^-4	0.867	NON_SYNONYMOUS_CODING ebd2 INTRON CG32436	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	4062359	X_4062359_SNP [dm3] X_4168326_SNP [dm6]	A	G	4.482e^-4	0.867	INTRON Fas2	TF binding site mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3R	17766195	3R_17766195_SNP [dm3] 3R_21940473_SNP [dm6]	C	T	4.482e^-4	0.867	INTERGENIC
3L	19134376	3L_19134376_DEL [dm3] 3L_19141276_DEL [dm6]	TT	T	4.493e^-4	0.867	UTR_3_PRIME fz2 DOWNSTREAM fz2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2R	20425805	2R_20425805_SNP [dm3] 2R_24538282_SNP [dm6]	C	T	4.500e^-4	0.867	INTRON CG4622 & 1 other
2R	8563587	2R_8563587_SNP [dm3] 2R_12676082_SNP [dm6]	A	G	4.502e^-4	0.867	UPSTREAM CG42708 INTRON CG42708	TF binding site mE1_TFBS_inv
2R	8563592	2R_8563592_SNP [dm3] 2R_12676087_SNP [dm6]	A	G	4.502e^-4	0.867	UPSTREAM CG42708 INTRON CG42708	TF binding site mE1_TFBS_inv
3R	26117973	3R_26117973_SNP [dm3] 3R_30292251_SNP [dm6]	A	T	4.505e^-4	0.867	INTRON hdc
2L	17417967	2L_17417967_SNP [dm3] 2L_17417967_SNP [dm6]	T	A	4.506e^-4	0.867	INTRON Dif	TF binding site mE1_TFBS_cad
3R	16063875	3R_16063875_SNP [dm3] 3R_20238153_SNP [dm6]	A	G	4.515e^-4	0.867	SYNONYMOUS_CODING Nlg4
3R	10603217	3R_10603217_SNP [dm3] 3R_14777495_SNP [dm6]	A	G	4.522e^-4	0.867	INTRON jvl
2R	9769608	2R_9769608_SNP [dm3] 2R_13882103_SNP [dm6]	C	T	4.527e^-4	0.867	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4648103	X_4648103_SNP [dm3] X_4754070_SNP [dm6]	A	G	4.532e^-4	0.867	INTERGENIC
2R	15290807	2R_15290807_SNP [dm3] 2R_19403302_SNP [dm6]	A	T	4.552e^-4	0.867	NON_SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	9946566	3R_9946566_SNP [dm3] 3R_14120844_SNP [dm6]	C	T	4.554e^-4	0.867	SPLICE_SITE_REGION Abi INTRON Abi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15812788	2R_15812788_DEL [dm3] 2R_19925283_DEL [dm6]	GT	G	4.566e^-4	0.867	DOWNSTREAM CR44626 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	17825275	2R_17825275_SNP [dm3] 2R_21937770_SNP [dm6]	T	C	4.574e^-4	0.867	UPSTREAM CG43742 INTRON Fili
3R	944317	3R_944317_SNP [dm3] 3R_5118595_SNP [dm6]	G	C	4.575e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	13696996	3L_13696996_SNP [dm3] 3L_13703896_SNP [dm6]	A	G	4.584e^-4	0.867	INTRON bru-3
3L	16882800	3L_16882800_SNP [dm3] 3L_16889700_SNP [dm6]	T	G	4.587e^-4	0.867	INTRON Lmpt
3R	16303335	3R_16303335_SNP [dm3] 3R_20477613_SNP [dm6]	C	G	4.598e^-4	0.867	INTRON Gfrl
3R	23410108	3R_23410108_SNP [dm3] 3R_27584386_SNP [dm6]	G	A	4.605e^-4	0.867	INTRON raps	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4893223	X_4893223_SNP [dm3] X_4999190_SNP [dm6]	G	C	4.605e^-4	0.867	DOWNSTREAM CG12680 INTRON CR44833	regulatory region REDfly_CRMs
3L	521551	3L_521551_INS [dm3] 3L_521551_INS [dm6]	C	CAACCACC	4.611e^-4	0.867	INTRON klar
2R	6792590	2R_6792590_SNP [dm3] 2R_10905085_SNP [dm6]	T	C	4.618e^-4	0.867	SYNONYMOUS_CODING CG12943 UTR_3_PRIME CG12943
3R	6279118	3R_6279118_SNP [dm3] 3R_10453396_SNP [dm6]	G	A	4.619e^-4	0.867	INTERGENIC
3R	22031921	3R_22031921_SNP [dm3] 3R_26206199_SNP [dm6]	A	G	4.620e^-4	0.867	INTRON CR44320
3L	2560974	3L_2560974_SNP [dm3] 3L_2560974_SNP [dm6]	G	A	4.623e^-4	0.867	INTRON msn
3L	752318	3L_752318_SNP [dm3] 3L_752318_SNP [dm6]	G	A	4.625e^-4	0.867	UTR_3_PRIME emc INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
3L	16915120	3L_16915120_SNP [dm3] 3L_16922020_SNP [dm6]	A	C	4.627e^-4	0.867	UTR_3_PRIME Lmpt
3L	7632926	3L_7632926_SNP [dm3] 3L_7639826_SNP [dm6]	A	T	4.632e^-4	0.867	UTR_3_PRIME CG33276 DOWNSTREAM CG33275 & 2 others
X	14325595	X_14325595_SNP [dm3] X_14431562_SNP [dm6]	C	A	4.636e^-4	0.867	INTRON dpr8
3L	399460	3L_399460_SNP [dm3] 3L_399460_SNP [dm6]	C	T	4.638e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_cad
3L	18807948	3L_18807948_SNP [dm3] 3L_18814848_SNP [dm6]	A	T	4.638e^-4	0.867	INTRON CG14073	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
3L	8674095	3L_8674095_SNP [dm3] 3L_8680995_SNP [dm6]	C	T	4.644e^-4	0.867	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17710844	3L_17710844_SNP [dm3] 3L_17717744_SNP [dm6]	G	A	4.655e^-4	0.867	INTRON Ccn
2L	5872254	2L_5872254_SNP [dm3] 2L_5872254_SNP [dm6]	T	G	4.656e^-4	0.867	INTRON rau	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2R	18025083	2R_18025083_SNP [dm3] 2R_22137578_SNP [dm6]	T	C	4.657e^-4	0.867	START_GAINED a UTR_5_PRIME a INTRON a	TF binding site mE1_TFBS_run mE1_TFBS_Trl
3L	9944059	3L_9944059_SNP [dm3] 3L_9950959_SNP [dm6]	C	T	4.674e^-4	0.867	INTRON CG34356
X	3663186	X_3663186_SNP [dm3] X_3769153_SNP [dm6]	C	G	4.676e^-4	0.867	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9152379	2L_9152379_SNP [dm3] 2L_9152379_SNP [dm6]	A	G	4.692e^-4	0.867	INTRON CG32982
3R	25789808	3R_25789808_DEL [dm3] 3R_29964086_DEL [dm6]	AGCTTTCGGCCGCA...	A	4.701e^-4	0.867	INTRON TkR99D
X	5880471	X_5880471_SNP [dm3] X_5986438_SNP [dm6]	G	A	4.703e^-4	0.867	UTR_3_PRIME Grip
3L	6523787	3L_6523787_SNP [dm3] 3L_6530687_SNP [dm6]	A	G	4.709e^-4	0.867	UPSTREAM CG32396 INTRON sfl	TF binding site mE1_TFBS_cad
3L	6523795	3L_6523795_SNP [dm3] 3L_6530695_SNP [dm6]	G	T	4.709e^-4	0.867	UPSTREAM CG32396 INTRON sfl	TF binding site mE1_TFBS_cad
2L	6132073	2L_6132073_SNP [dm3] 2L_6132073_SNP [dm6]	T	C	4.724e^-4	0.867	INTRON CG9222
2R	10222138	2R_10222138_SNP [dm3] 2R_14334633_SNP [dm6]	G	A	4.726e^-4	0.867	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18282069	2R_18282069_SNP [dm3] 2R_22394564_SNP [dm6]	T	A	4.727e^-4	0.867	DOWNSTREAM CG13506 INTRON babos
2R	18282074	2R_18282074_SNP [dm3] 2R_22394569_SNP [dm6]	G	C	4.727e^-4	0.867	DOWNSTREAM CG13506 INTRON babos
2R	18282093	2R_18282093_SNP [dm3] 2R_22394588_SNP [dm6]	T	C	4.727e^-4	0.867	DOWNSTREAM CG13506 INTRON babos
3L	13295391	3L_13295391_SNP [dm3] 3L_13302291_SNP [dm6]	C	A	4.739e^-4	0.867	UPSTREAM CR43911 DOWNSTREAM CR44557 & 1 other INTERGENIC
3R	21977544	3R_21977544_SNP [dm3] 3R_26151822_SNP [dm6]	A	C	4.742e^-4	0.867	INTERGENIC
3L	8759403	3L_8759403_SNP [dm3] 3L_8766303_SNP [dm6]	C	G	4.745e^-4	0.867	UPSTREAM Fhos INTRON Fhos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	3613930	X_3613930_SNP [dm3] X_3719897_SNP [dm6]	T	C	4.748e^-4	0.867	UPSTREAM tlk & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_run
2R	19668101	2R_19668101_SNP [dm3] 2R_23780578_SNP [dm6]	T	C	4.753e^-4	0.867	INTRON CG9850
3L	11291218	3L_11291218_SNP [dm3] 3L_11298118_SNP [dm6]	G	A	4.767e^-4	0.867	INTERGENIC
3L	5675546	3L_5675546_SNP [dm3] 3L_5682446_SNP [dm6]	C	A	4.768e^-4	0.867	INTRON sif
3L	22198784	3L_22198784_SNP [dm3] 3L_22205684_SNP [dm6]	A	G	4.773e^-4	0.867	INTRON olf413	TF binding site mE1_TFBS_HSA
3R	24573266	3R_24573266_INS [dm3] 3R_28747544_INS [dm6]	T	TG	4.782e^-4	0.867	DOWNSTREAM CG10000 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	4965182	3R_4965182_SNP [dm3] 3R_9139460_SNP [dm6]	A	C	4.787e^-4	0.867	INTRON pum
3R	4965185	3R_4965185_SNP [dm3] 3R_9139463_SNP [dm6]	G	T	4.787e^-4	0.867	INTRON pum
3L	17973746	3L_17973746_SNP [dm3] 3L_17980646_SNP [dm6]	T	C	4.796e^-4	0.867	INTRON Eip75B	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	10797716	3R_10797716_SNP [dm3] 3R_14971994_SNP [dm6]	C	G	4.804e^-4	0.867	INTERGENIC
3L	17683720	3L_17683720_SNP [dm3] 3L_17690620_SNP [dm6]	A	T	4.805e^-4	0.867	INTRON Ccn
3L	17882575	3L_17882575_SNP [dm3] 3L_17889475_SNP [dm6]	T	C	4.821e^-4	0.867	INTRON CG7402
3L	15436885	3L_15436885_SNP [dm3] 3L_15443785_SNP [dm6]	A	G	4.826e^-4	0.867	INTERGENIC
3R	25138178	3R_25138178_SNP [dm3] 3R_29312456_SNP [dm6]	T	A	4.826e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_sens
2R	19360569	2R_19360569_SNP [dm3] 2R_23473046_SNP [dm6]	T	C	4.833e^-4	0.867	SYNONYMOUS_CODING Or59c INTRON CG43795	TF binding site mE1_TFBS_chinmo
3L	8753232	3L_8753232_SNP [dm3] 3L_8760132_SNP [dm6]	A	G	4.833e^-4	0.867	SYNONYMOUS_CODING Fhos

Missing results

By genomic position
Variant impact
Gene name

pc_KP_PElem_GS phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results