DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.994e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.09852

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	7.1513	0.028

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1232 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	13575989	X_13575989_SNP [dm3] X_13681956_SNP [dm6]	C	T	3.885e^-6	0.996	UPSTREAM CG11158 INTERGENIC
3R	14974297	3R_14974297_SNP [dm3] 3R_19148575_SNP [dm6]	A	G	4.489e^-6	0.996	UPSTREAM Ppcs & 1 other DOWNSTREAM CG5835 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	14974342	3R_14974342_SNP [dm3] 3R_19148620_SNP [dm6]	A	T	4.489e^-6	0.996	UPSTREAM Ppcs & 1 other DOWNSTREAM CG5835 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	7558758	2L_7558758_SNP [dm3] 2L_7558758_SNP [dm6]	C	T	4.634e^-6	0.996	INTRON RapGAP1
2L	7559398	2L_7559398_SNP [dm3] 2L_7559398_SNP [dm6]	A	T	4.791e^-6	0.996	INTRON RapGAP1
2L	7559404	2L_7559404_SNP [dm3] 2L_7559404_SNP [dm6]	T	A	4.791e^-6	0.996	INTRON RapGAP1
2L	7559419	2L_7559419_SNP [dm3] 2L_7559419_SNP [dm6]	T	A	4.791e^-6	0.996	INTRON RapGAP1
2L	13274158	2L_13274158_SNP [dm3] 2L_13274158_SNP [dm6]	G	T	5.930e^-6	0.996	INTRON CG44085
3R	25277606	3R_25277606_SNP [dm3] 3R_29451884_SNP [dm6]	T	A	5.988e^-6	0.996	INTRON Ptp99A
2L	7559183	2L_7559183_SNP [dm3] 2L_7559183_SNP [dm6]	C	A	9.874e^-6	0.996	INTRON RapGAP1
2L	16558473	2L_16558473_SNP [dm3] 2L_16558473_SNP [dm6]	G	T	1.165e^-5	0.996	SYNONYMOUS_CODING CG42389	TF binding site mE1_TFBS_cad
3L	10396546	3L_10396546_SNP [dm3] 3L_10403446_SNP [dm6]	G	C	1.250e^-5	0.996	INTERGENIC
3R	15126021	3R_15126021_SNP [dm3] 3R_19300299_SNP [dm6]	A	T	1.507e^-5	0.996	INTERGENIC
2L	16558413	2L_16558413_SNP [dm3] 2L_16558413_SNP [dm6]	T	A	1.638e^-5	0.996	SYNONYMOUS_CODING CG42389	TF binding site mE1_TFBS_cad
3R	25304834	3R_25304834_SNP [dm3] 3R_29479112_SNP [dm6]	A	T	1.850e^-5	0.996	UPSTREAM Ptp99A INTRON Ptp99A	TF binding site mE1_TFBS_cad
3L	14070495	3L_14070495_SNP [dm3] 3L_14077395_SNP [dm6]	G	A	1.940e^-5	0.996	INTRON btl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14070496	3L_14070496_SNP [dm3] 3L_14077396_SNP [dm6]	T	C	1.940e^-5	0.996	INTRON btl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15262087	3R_15262087_SNP [dm3] 3R_19436365_SNP [dm6]	T	C	1.975e^-5	0.996	INTRON CG31221
3R	13969673	3R_13969673_SNP [dm3] 3R_18143951_SNP [dm6]	G	C	2.144e^-5	0.996	INTERGENIC
3R	16824633	3R_16824633_SNP [dm3] 3R_20998911_SNP [dm6]	T	G	2.171e^-5	0.996	INTRON Calx
3L	21968126	3L_21968126_SNP [dm3] 3L_21975026_SNP [dm6]	T	A	2.208e^-5	0.996	INTRON CG7470
3L	21968129	3L_21968129_SNP [dm3] 3L_21975029_SNP [dm6]	T	C	2.208e^-5	0.996	INTRON CG7470
3L	21968130	3L_21968130_SNP [dm3] 3L_21975030_SNP [dm6]	G	A	2.208e^-5	0.996	INTRON CG7470
3L	9309606	3L_9309606_SNP [dm3] 3L_9316506_SNP [dm6]	C	G	2.250e^-5	0.996	INTERGENIC
3L	11208027	3L_11208027_SNP [dm3] 3L_11214927_SNP [dm6]	A	G	2.397e^-5	0.996	UPSTREAM CG42671 DOWNSTREAM CG7600 INTRON CG42671	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_Kr mE1_TFBS_Trl
X	18391760	X_18391760_SNP [dm3] X_18497727_SNP [dm6]	T	A	2.628e^-5	0.996	INTRON GalNAc-T2
2R	10710564	2R_10710564_SNP [dm3] 2R_14823059_SNP [dm6]	C	T	2.741e^-5	0.996	DOWNSTREAM CR45329 INTERGENIC
3L	11208193	3L_11208193_SNP [dm3] 3L_11215093_SNP [dm6]	C	G	2.874e^-5	0.996	UPSTREAM CG42671 DOWNSTREAM CG7600 INTRON CG42671	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_Kr mE1_TFBS_Trl
2R	10715629	2R_10715629_SNP [dm3] 2R_14828124_SNP [dm6]	A	G	3.195e^-5	0.996	INTERGENIC
2L	9571456	2L_9571456_SNP [dm3] 2L_9571456_SNP [dm6]	A	T	3.233e^-5	0.996	INTRON CG3838
2R	19833852	2R_19833852_SNP [dm3] 2R_23946329_SNP [dm6]	T	G	3.264e^-5	0.996	DOWNSTREAM CG13565 INTRON Galphas
X	6679124	X_6679124_SNP [dm3] X_6785091_SNP [dm6]	A	G	3.424e^-5	0.996	INTRON C3G	TF binding site mE1_TFBS_HSA
3L	761241	3L_761241_SNP [dm3] 3L_761241_SNP [dm6]	G	A	3.468e^-5	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	9608146	3L_9608146_SNP [dm3] 3L_9615046_SNP [dm6]	T	C	3.514e^-5	0.996	UPSTREAM LanB2 INTRON LanB2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	18601161	3L_18601161_SNP [dm3] 3L_18608061_SNP [dm6]	C	A	3.661e^-5	0.996	NON_SYNONYMOUS_CODING CG18231 DOWNSTREAM CG18233 INTRON CG4174 & 1 other
3L	9675977	3L_9675977_SNP [dm3] 3L_9682877_SNP [dm6]	T	C	3.734e^-5	0.996	SYNONYMOUS_CODING alphaTub67C DOWNSTREAM CG6767	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	13413265	3R_13413265_SNP [dm3] 3R_17587543_SNP [dm6]	T	G	3.916e^-5	0.996	INTERGENIC
X	13155905	X_13155905_SNP [dm3] X_13261872_SNP [dm6]	T	A	3.930e^-5	0.996	UTR_3_PRIME comt DOWNSTREAM HDAC4
X	13155912	X_13155912_SNP [dm3] X_13261879_SNP [dm6]	C	T	3.930e^-5	0.996	UTR_3_PRIME comt DOWNSTREAM HDAC4
3R	14374772	3R_14374772_SNP [dm3] 3R_18549050_SNP [dm6]	A	G	3.973e^-5	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14973232	3R_14973232_SNP [dm3] 3R_19147510_SNP [dm6]	G	C	3.976e^-5	0.996	UTR_5_PRIME Ppcs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	13576002	X_13576002_SNP [dm3] X_13681969_SNP [dm6]	A	G	4.071e^-5	0.996	UPSTREAM CG11158 INTERGENIC
3L	2853983	3L_2853983_SNP [dm3] 3L_2853983_SNP [dm6]	T	C	4.126e^-5	0.996	INTRON CG43444
3L	16470855	3L_16470855_SNP [dm3] 3L_16477755_SNP [dm6]	A	T	4.210e^-5	0.996	INTRON CG33158 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16470867	3L_16470867_INS [dm3] 3L_16477767_INS [dm6]	A	AC	4.210e^-5	0.996	INTRON CG33158 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16470884	3L_16470884_SNP [dm3] 3L_16477784_SNP [dm6]	T	C	4.210e^-5	0.996	INTRON CG33158 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12387047	X_12387047_SNP [dm3] X_12493014_SNP [dm6]	A	C	4.423e^-5	0.996	DOWNSTREAM Lsp1alpha INTERGENIC
3R	15970826	3R_15970826_SNP [dm3] 3R_20145104_SNP [dm6]	C	T	4.487e^-5	0.996	INTERGENIC
3R	15970838	3R_15970838_DEL [dm3] 3R_20145116_DEL [dm6]	TCCATTT	T	4.512e^-5	0.996	INTERGENIC
2R	18036696	2R_18036696_SNP [dm3] 2R_22149191_SNP [dm6]	C	A	4.687e^-5	0.996	INTRON a
2L	10482154	2L_10482154_SNP [dm3] 2L_10482154_SNP [dm6]	G	A	4.693e^-5	0.996	SYNONYMOUS_CODING RluA-2 UTR_3_PRIME RluA-2	TF binding site mE1_TFBS_sens
2L	3659304	2L_3659304_SNP [dm3] 2L_3659304_SNP [dm6]	T	A	4.751e^-5	0.996	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	10396510	3L_10396510_SNP [dm3] 3L_10403410_SNP [dm6]	T	A	4.781e^-5	0.996	INTERGENIC
X	13575984	X_13575984_SNP [dm3] X_13681951_SNP [dm6]	T	A	4.798e^-5	0.996	INTERGENIC
2L	16558500	2L_16558500_SNP [dm3] 2L_16558500_SNP [dm6]	A	C	5.053e^-5	0.996	SYNONYMOUS_CODING CG42389	TF binding site mE1_TFBS_cad
X	12387044	X_12387044_SNP [dm3] X_12493011_SNP [dm6]	G	T	5.133e^-5	0.996	DOWNSTREAM Lsp1alpha INTERGENIC
X	12387064	X_12387064_SNP [dm3] X_12493031_SNP [dm6]	G	T	5.133e^-5	0.996	DOWNSTREAM Lsp1alpha INTERGENIC
X	12387065	X_12387065_SNP [dm3] X_12493032_SNP [dm6]	C	T	5.133e^-5	0.996	DOWNSTREAM Lsp1alpha INTERGENIC
X	12387069	X_12387069_SNP [dm3] X_12493036_SNP [dm6]	T	G	5.133e^-5	0.996	DOWNSTREAM Lsp1alpha INTERGENIC
X	12387073	X_12387073_SNP [dm3] X_12493040_SNP [dm6]	A	T	5.133e^-5	0.996	DOWNSTREAM Lsp1alpha INTERGENIC
3R	17543897	3R_17543897_SNP [dm3] 3R_21718175_SNP [dm6]	A	T	5.152e^-5	0.996	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
3R	17543959	3R_17543959_SNP [dm3] 3R_21718237_SNP [dm6]	T	A	5.152e^-5	0.996	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
3R	17543984	3R_17543984_SNP [dm3] 3R_21718262_SNP [dm6]	A	T	5.152e^-5	0.996	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
X	16528000	X_16528000_SNP [dm3] X_16633967_SNP [dm6]	G	C	5.166e^-5	0.996	INTRON Rok
3R	20960323	3R_20960323_SNP [dm3] 3R_25134601_SNP [dm6]	C	T	5.188e^-5	0.996	SYNONYMOUS_CODING Bili
2L	7559420	2L_7559420_SNP [dm3] 2L_7559420_SNP [dm6]	G	A	5.328e^-5	0.996	INTRON RapGAP1
3L	8215472	3L_8215472_SNP [dm3] 3L_8222372_SNP [dm6]	T	G	5.334e^-5	0.996	INTRON CG13678
2L	3659359	2L_3659359_SNP [dm3] 2L_3659359_SNP [dm6]	A	T	5.451e^-5	0.996	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	3659371	2L_3659371_SNP [dm3] 2L_3659371_SNP [dm6]	C	A	5.451e^-5	0.996	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	19009750	3R_19009750_SNP [dm3] 3R_23184028_SNP [dm6]	A	T	5.471e^-5	0.996	SYNONYMOUS_CODING Irk1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3272655	3L_3272655_SNP [dm3] 3L_3272655_SNP [dm6]	T	C	5.707e^-5	0.996	INTRON CG14960
3L	2869275	3L_2869275_SNP [dm3] 3L_2869275_SNP [dm6]	G	T	5.709e^-5	0.996	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4043937	3L_4043937_SNP [dm3] 3L_4043937_SNP [dm6]	C	G	5.724e^-5	0.996	INTERGENIC
3L	768328	3L_768328_DEL [dm3] 3L_768328_DEL [dm6]	TT	T	5.896e^-5	0.996	INTERGENIC
2L	5806335	2L_5806335_SNP [dm3] 2L_5806335_SNP [dm6]	T	C	6.845e^-5	0.996	INTRON CG11034
3R	23672880	3R_23672880_INS [dm3] 3R_27847158_INS [dm6]	A	ACATAGATATA...	6.877e^-5	0.996	INTRON CG34353 & 1 other
3R	16991750	3R_16991750_DEL [dm3] 3R_21166028_DEL [dm6]	AA	A	6.908e^-5	0.996	DOWNSTREAM CG5810 INTRON SNF4Agamma & 1 other
3R	16991762	3R_16991762_SNP [dm3] 3R_21166040_SNP [dm6]	A	C	6.908e^-5	0.996	DOWNSTREAM CG5810 INTRON SNF4Agamma & 1 other
3R	26410498	3R_26410498_SNP [dm3] 3R_30584776_SNP [dm6]	T	C	6.967e^-5	0.996	SYNONYMOUS_CODING CG9717	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	13349755	X_13349755_SNP [dm3] X_13455722_SNP [dm6]	A	G	6.985e^-5	0.996	DOWNSTREAM CG34324 INTRON Neto
3R	19927809	3R_19927809_SNP [dm3] 3R_24102087_SNP [dm6]	G	T	7.302e^-5	0.996	INTRON 4EHP & 1 other
3R	17211173	3R_17211173_SNP [dm3] 3R_21385451_SNP [dm6]	A	T	7.331e^-5	0.996	INTERGENIC	regulatory region REDfly_CRMs
3R	16824689	3R_16824689_SNP [dm3] 3R_20998967_SNP [dm6]	C	G	7.415e^-5	0.996	INTRON Calx
3R	16824780	3R_16824780_SNP [dm3] 3R_20999058_SNP [dm6]	C	T	7.617e^-5	0.996	INTRON Calx
3L	14381391	3L_14381391_SNP [dm3] 3L_14388291_SNP [dm6]	A	C	7.760e^-5	0.996	INTERGENIC
2L	16558338	2L_16558338_SNP [dm3] 2L_16558338_SNP [dm6]	G	T	7.814e^-5	0.996	NON_SYNONYMOUS_CODING CG42389	TF binding site mE1_TFBS_cad
3L	16461469	3L_16461469_SNP [dm3] 3L_16468369_SNP [dm6]	T	A	7.815e^-5	0.996	INTRON CG33158
2R	1363884	2R_1363884_SNP [dm3] 2R_5476379_SNP [dm6]	C	T	7.844e^-5	0.996	INTRON CG30440	transposable element FlyBase
3L	10396532	3L_10396532_SNP [dm3] 3L_10403432_SNP [dm6]	C	A	7.986e^-5	0.996	INTERGENIC
3L	9608244	3L_9608244_SNP [dm3] 3L_9615144_SNP [dm6]	G	A	8.353e^-5	0.996	UPSTREAM LanB2 INTRON LanB2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	14460526	X_14460526_SNP [dm3] X_14566493_SNP [dm6]	A	G	8.400e^-5	0.996	INTERGENIC
X	12388723	X_12388723_SNP [dm3] X_12494690_SNP [dm6]	A	G	8.411e^-5	0.996	SYNONYMOUS_CODING Mks1
3L	12565386	3L_12565386_SNP [dm3] 3L_12572286_SNP [dm6]	T	C	8.554e^-5	0.996	INTRON sowah	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15257241	3R_15257241_INS [dm3] 3R_19431519_INS [dm6]	T	TT	8.747e^-5	0.996	INTRON CG31221
2R	17389268	2R_17389268_SNP [dm3] 2R_21501763_SNP [dm6]	C	G	8.825e^-5	0.996	UPSTREAM MESK2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
X	12387048	X_12387048_SNP [dm3] X_12493015_SNP [dm6]	A	T	8.913e^-5	0.996	DOWNSTREAM Lsp1alpha INTERGENIC
2R	11900270	2R_11900270_SNP [dm3] 2R_16012765_SNP [dm6]	A	G	8.927e^-5	0.996	SYNONYMOUS_CODING CG8389	TF binding site BDTNP1_TFBS_sna
3L	10860571	3L_10860571_SNP [dm3] 3L_10867471_SNP [dm6]	T	C	9.118e^-5	0.996	INTRON tna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	14066885	3L_14066885_SNP [dm3] 3L_14073785_SNP [dm6]	G	A	9.600e^-5	0.996	SYNONYMOUS_CODING Pex1	TF binding site mE1_TFBS_sens
2R	12012596	2R_12012596_SNP [dm3] 2R_16125091_SNP [dm6]	A	T	9.680e^-5	0.996	UTR_5_PRIME spin DOWNSTREAM CG30095	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	11208724	3L_11208724_SNP [dm3] 3L_11215624_SNP [dm6]	A	T	9.883e^-5	0.996	UPSTREAM CG42671 INTRON CG42671	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	21257788	3R_21257788_SNP [dm3] 3R_25432066_SNP [dm6]	A	G	9.998e^-5	0.996	INTRON Fur1
X	19600606	X_19600606_SNP [dm3] X_19706573_SNP [dm6]	T	A	1.007e^-4	0.996	UTR_3_PRIME meso18E DOWNSTREAM CG14230	TF binding site mE1_TFBS_HSA
2R	11900213	2R_11900213_SNP [dm3] 2R_16012708_SNP [dm6]	A	C	1.012e^-4	0.996	SYNONYMOUS_CODING CG8389	TF binding site BDTNP1_TFBS_sna
2L	6949904	2L_6949904_SNP [dm3] 2L_6949904_SNP [dm6]	A	G	1.012e^-4	0.996	SYNONYMOUS_CODING Gas41 UPSTREAM SA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	9307726	3L_9307726_SNP [dm3] 3L_9314626_SNP [dm6]	C	T	1.018e^-4	0.996	INTERGENIC
3L	9310322	3L_9310322_SNP [dm3] 3L_9317222_SNP [dm6]	G	A	1.019e^-4	0.996	INTERGENIC
3R	27529084	3R_27529084_SNP [dm3] 3R_31703362_SNP [dm6]	A	G	1.050e^-4	0.996	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	16470853	3L_16470853_SNP [dm3] 3L_16477753_SNP [dm6]	A	G	1.058e^-4	0.996	INTRON CG33158 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27211263	3R_27211263_DEL [dm3] 3R_31385541_DEL [dm6]	AA	G	1.064e^-4	0.996	INTRON CG1607
X	18833043	X_18833043_INS [dm3] X_18939010_INS [dm6]	A	AGA	1.067e^-4	0.996	INTRON CG43759	TF binding site BDTNP1_TFBS_dl
X	13930180	X_13930180_SNP [dm3] X_14036147_SNP [dm6]	A	G	1.075e^-4	0.996	INTERGENIC
X	13349715	X_13349715_SNP [dm3] X_13455682_SNP [dm6]	A	G	1.077e^-4	0.996	DOWNSTREAM CG34324 INTRON Neto
3L	21968433	3L_21968433_SNP [dm3] 3L_21975333_SNP [dm6]	A	G	1.084e^-4	0.996	INTRON CG7470
2L	22238713	2L_22238713_INS [dm3] 2L_22238713_INS [dm6]	G	GCAAATATTCTGGAGACG...	1.102e^-4	0.996	DOWNSTREAM CR43765 INTERGENIC	transposable element FlyBase
3R	13764997	3R_13764997_SNP [dm3] 3R_17939275_SNP [dm6]	A	C	1.104e^-4	0.996	INTRON cpo	TF binding site mE1_TFBS_sens
3L	3588176	3L_3588176_SNP [dm3] 3L_3588176_SNP [dm6]	T	C	1.110e^-4	0.996	INTRON Eip63E
3L	17240409	3L_17240409_DEL [dm3] 3L_17247309_DEL [dm6]	TATAT	C	1.121e^-4	0.996	INTRON CR43870	transposable element FlyBase
2R	12011490	2R_12011490_SNP [dm3] 2R_16123985_SNP [dm6]	C	T	1.163e^-4	0.996	UPSTREAM spin INTRON CG30095	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_Ubx
3R	21889393	3R_21889393_SNP [dm3] 3R_26063671_SNP [dm6]	C	G	1.176e^-4	0.996	UPSTREAM CG14551 INTERGENIC
3R	25094519	3R_25094519_SNP [dm3] 3R_29268797_SNP [dm6]	T	A	1.215e^-4	0.996	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8994813	2R_8994813_SNP [dm3] 2R_13107308_SNP [dm6]	A	T	1.218e^-4	0.996	INTERGENIC
3L	9310613	3L_9310613_SNP [dm3] 3L_9317513_SNP [dm6]	C	T	1.219e^-4	0.996	INTERGENIC
3R	19469820	3R_19469820_SNP [dm3] 3R_23644098_SNP [dm6]	T	G	1.224e^-4	0.996	INTRON CG31145
3R	16709393	3R_16709393_SNP [dm3] 3R_20883671_SNP [dm6]	T	C	1.231e^-4	0.996	INTERGENIC
2R	1322881	2R_1322881_DEL [dm3] 2R_5435376_DEL [dm6]	TT	T	1.233e^-4	0.996	INTRON laccase2
3R	15257246	3R_15257246_SNP [dm3] 3R_19431524_SNP [dm6]	A	C	1.239e^-4	0.996	INTRON CG31221
2R	1361370	2R_1361370_SNP [dm3] 2R_5473865_SNP [dm6]	T	C	1.241e^-4	0.996	INTRON CG30440	transposable element FlyBase
2R	1575109	2R_1575109_SNP [dm3] 2R_5687604_SNP [dm6]	G	C	1.244e^-4	0.996	INTRON scaf
3R	11588019	3R_11588019_SNP [dm3] 3R_15762297_SNP [dm6]	G	A	1.256e^-4	0.996	UPSTREAM CG12784 INTERGENIC
3R	25590956	3R_25590956_SNP [dm3] 3R_29765234_SNP [dm6]	T	G	1.278e^-4	0.996	UPSTREAM kay INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	14279985	2R_14279985_SNP [dm3] 2R_18392480_SNP [dm6]	G	C	1.296e^-4	0.996	INTERGENIC
3L	10396489	3L_10396489_INS [dm3] 3L_10403389_INS [dm6]	T	TTA	1.309e^-4	0.996	INTERGENIC
3L	2335765	3L_2335765_SNP [dm3] 3L_2335765_SNP [dm6]	C	A	1.336e^-4	0.996	INTRON MsR1
X	5447704	X_5447704_SNP [dm3] X_5553671_SNP [dm6]	G	A	1.386e^-4	0.996	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl
X	12388124	X_12388124_SNP [dm3] X_12494091_SNP [dm6]	C	G	1.413e^-4	0.996	DOWNSTREAM Mks1 INTERGENIC
X	12388126	X_12388126_SNP [dm3] X_12494093_SNP [dm6]	A	T	1.413e^-4	0.996	DOWNSTREAM Mks1 INTERGENIC
X	17831255	X_17831255_SNP [dm3] X_17937222_SNP [dm6]	A	C	1.418e^-4	0.996	INTRON Sh
2R	11900267	2R_11900267_SNP [dm3] 2R_16012762_SNP [dm6]	G	C	1.429e^-4	0.996	SYNONYMOUS_CODING CG8389	TF binding site BDTNP1_TFBS_sna
3L	4180529	3L_4180529_SNP [dm3] 3L_4180529_SNP [dm6]	T	A	1.442e^-4	0.996	INTRON CG18675 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11050564	3L_11050564_SNP [dm3] 3L_11057464_SNP [dm6]	A	G	1.459e^-4	0.996	INTRON CG7888
3R	24988908	3R_24988908_SNP [dm3] 3R_29163186_SNP [dm6]	C	T	1.463e^-4	0.996	INTRON CG11897
2L	7099836	2L_7099836_SNP [dm3] 2L_7099836_SNP [dm6]	T	C	1.465e^-4	0.996	UTR_3_PRIME Pvf3	TF binding site BDTNP1_TFBS_sna
2L	7099837	2L_7099837_SNP [dm3] 2L_7099837_SNP [dm6]	T	C	1.465e^-4	0.996	UTR_3_PRIME Pvf3	TF binding site BDTNP1_TFBS_sna
3L	18269851	3L_18269851_INS [dm3] 3L_18276751_INS [dm6]	T	TT	1.467e^-4	0.996	INTERGENIC
2R	13354309	2R_13354309_SNP [dm3] 2R_17466804_SNP [dm6]	T	C	1.497e^-4	0.996	SYNONYMOUS_CODING Tes	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	12385568	X_12385568_SNP [dm3] X_12491535_SNP [dm6]	C	T	1.523e^-4	0.996	SYNONYMOUS_CODING Lsp1alpha	TF binding site mE1_TFBS_sens
2R	7684900	2R_7684900_SNP [dm3] 2R_11797395_SNP [dm6]	A	G	1.526e^-4	0.996	INTRON ths	TF binding site mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
2R	17789009	2R_17789009_SNP [dm3] 2R_21901504_SNP [dm6]	G	A	1.554e^-4	0.996	INTRON Fili	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13354351	2R_13354351_SNP [dm3] 2R_17466846_SNP [dm6]	T	C	1.572e^-4	0.996	SYNONYMOUS_CODING Tes	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11208359	3L_11208359_SNP [dm3] 3L_11215259_SNP [dm6]	C	G	1.577e^-4	0.996	UPSTREAM CG42671 INTRON CG42671	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_Kr mE1_TFBS_Trl
2L	10482148	2L_10482148_SNP [dm3] 2L_10482148_SNP [dm6]	C	T	1.579e^-4	0.996	SYNONYMOUS_CODING RluA-2 UTR_3_PRIME RluA-2	TF binding site mE1_TFBS_sens
X	12388447	X_12388447_DEL [dm3] X_12494414_DEL [dm6]	TA	T	1.588e^-4	0.996	UTR_3_PRIME Mks1
2L	8010395	2L_8010395_SNP [dm3] 2L_8010395_SNP [dm6]	A	C	1.601e^-4	0.996	UPSTREAM CG12560 INTRON CG34010	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	13496591	2R_13496591_SNP [dm3] 2R_17609086_SNP [dm6]	C	T	1.631e^-4	0.996	SYNONYMOUS_CODING CG10936
2L	7455838	2L_7455838_SNP [dm3] 2L_7455838_SNP [dm6]	T	C	1.637e^-4	0.996	NON_SYNONYMOUS_CODING Gr28b INTRON Gr28b	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	13353829	2R_13353829_INS [dm3] 2R_17466324_INS [dm6]	A	AT	1.644e^-4	0.996	UTR_3_PRIME Tes DOWNSTREAM CG14478	TF binding site BDTNP1_TFBS_dl
2R	13353860	2R_13353860_SNP [dm3] 2R_17466355_SNP [dm6]	G	T	1.644e^-4	0.996	UTR_3_PRIME Tes DOWNSTREAM CG14478	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11769504	X_11769504_SNP [dm3] X_11875471_SNP [dm6]	G	A	1.644e^-4	0.996	UTR_3_PRIME CG10352 DOWNSTREAM CG15739
3L	11227152	3L_11227152_SNP [dm3] 3L_11234052_SNP [dm6]	A	G	1.651e^-4	0.996	SYNONYMOUS_CODING Ir68a
2L	2688237	2L_2688237_SNP [dm3] 2L_2688237_SNP [dm6]	C	A	1.658e^-4	0.996	INTRON CG31690
2R	14185843	2R_14185843_SNP [dm3] 2R_18298338_SNP [dm6]	T	C	1.664e^-4	0.996	SYNONYMOUS_CODING CG18539 UTR_5_PRIME CG18539 UPSTREAM CG18540 DOWNSTREAM CG18538 INTRON sbb
3L	3272615	3L_3272615_SNP [dm3] 3L_3272615_SNP [dm6]	T	G	1.677e^-4	0.996	INTRON CG14960
3L	3272761	3L_3272761_SNP [dm3] 3L_3272761_SNP [dm6]	T	C	1.677e^-4	0.996	INTRON CG14960
3L	3273034	3L_3273034_SNP [dm3] 3L_3273034_SNP [dm6]	T	C	1.677e^-4	0.996	INTRON CG14960
X	9827030	X_9827030_SNP [dm3] X_9932997_SNP [dm6]	G	T	1.679e^-4	0.996	INTERGENIC
2L	6735945	2L_6735945_SNP [dm3] 2L_6735945_SNP [dm6]	T	A	1.703e^-4	0.996	DOWNSTREAM TTLL3A INTRON TTLL3B
3L	11048347	3L_11048347_SNP [dm3] 3L_11055247_SNP [dm6]	A	T	1.722e^-4	0.996	UPSTREAM CG7888 INTRON CG7888
3L	11048349	3L_11048349_INS [dm3] 3L_11055249_INS [dm6]	A	TTTCAAG	1.722e^-4	0.996	UPSTREAM CG7888 INTRON CG7888
3R	11641351	3R_11641351_SNP [dm3] 3R_15815629_SNP [dm6]	G	A	1.724e^-4	0.996	INTRON alpha-Man-IIb
3R	11641356	3R_11641356_SNP [dm3] 3R_15815634_SNP [dm6]	A	T	1.724e^-4	0.996	INTRON alpha-Man-IIb
3L	11208298	3L_11208298_SNP [dm3] 3L_11215198_SNP [dm6]	C	A	1.750e^-4	0.996	UPSTREAM CG42671 INTRON CG42671	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_Kr mE1_TFBS_Trl
3L	13037081	3L_13037081_SNP [dm3] 3L_13043981_SNP [dm6]	C	A	1.751e^-4	0.996	UTR_3_PRIME RpS4 UPSTREAM Syx13 DOWNSTREAM snoRNA:Psi28S-3327b & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	25305787	3R_25305787_INS [dm3] 3R_29480065_INS [dm6]	T	TT	1.768e^-4	0.996	INTRON Ptp99A
3L	386757	3L_386757_DEL [dm3] 3L_386757_DEL [dm6]	AGG	A	1.770e^-4	0.996	INTRON trh
3L	7692845	3L_7692845_SNP [dm3] 3L_7699745_SNP [dm6]	A	T	1.803e^-4	0.996	SYNONYMOUS_CODING Ank2 INTRON CG32373
3L	9980696	3L_9980696_SNP [dm3] 3L_9987596_SNP [dm6]	G	A	1.807e^-4	0.996	INTRON dpr6
3L	9220616	3L_9220616_SNP [dm3] 3L_9227516_SNP [dm6]	C	G	1.812e^-4	0.996	INTERGENIC
3L	12565915	3L_12565915_SNP [dm3] 3L_12572815_SNP [dm6]	G	A	1.826e^-4	0.996	UPSTREAM sowah INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	16991774	3R_16991774_SNP [dm3] 3R_21166052_SNP [dm6]	C	T	1.837e^-4	0.996	DOWNSTREAM CG5810 INTRON SNF4Agamma & 1 other
X	13349699	X_13349699_SNP [dm3] X_13455666_SNP [dm6]	C	G	1.837e^-4	0.996	DOWNSTREAM CG34324 INTRON Neto
2L	7455833	2L_7455833_SNP [dm3] 2L_7455833_SNP [dm6]	T	A	1.844e^-4	0.996	SYNONYMOUS_CODING Gr28b INTRON Gr28b	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	22022105	3L_22022105_SNP [dm3] 3L_22029005_SNP [dm6]	C	A	1.855e^-4	0.996	UPSTREAM CG7140 & 1 other DOWNSTREAM CG43392 INTERGENIC
3R	27207649	3R_27207649_SNP [dm3] 3R_31381927_SNP [dm6]	T	C	1.862e^-4	0.996	UPSTREAM CG1607 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	13556842	3R_13556842_SNP [dm3] 3R_17731120_SNP [dm6]	C	T	1.869e^-4	0.996	SYNONYMOUS_CODING Lgr1
2R	10690756	2R_10690756_SNP [dm3] 2R_14803251_SNP [dm6]	G	C	1.893e^-4	0.996	INTRON kn	regulatory region REDfly_CRMs
2R	16003097	2R_16003097_SNP [dm3] 2R_20115592_SNP [dm6]	A	G	1.900e^-4	0.996	SYNONYMOUS_CODING 18w	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16822861	3L_16822861_SNP [dm3] 3L_16829761_SNP [dm6]	C	T	1.908e^-4	0.996	UPSTREAM CG13024 INTERGENIC
2L	2949390	2L_2949390_SNP [dm3] 2L_2949390_SNP [dm6]	G	A	1.913e^-4	0.996	SYNONYMOUS_CODING lilli	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	10971649	X_10971649_SNP [dm3] X_11077616_SNP [dm6]	C	T	1.920e^-4	0.996	SYNONYMOUS_CODING sev	TF binding site mE1_TFBS_chinmo
3L	21967034	3L_21967034_SNP [dm3] 3L_21973934_SNP [dm6]	T	C	1.928e^-4	0.996	INTRON CG7470
3L	21967038	3L_21967038_SNP [dm3] 3L_21973938_SNP [dm6]	C	T	1.928e^-4	0.996	INTRON CG7470
3L	21967049	3L_21967049_SNP [dm3] 3L_21973949_SNP [dm6]	G	A	1.928e^-4	0.996	INTRON CG7470
3L	759455	3L_759455_SNP [dm3] 3L_759455_SNP [dm6]	A	G	1.930e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	11227042	3L_11227042_SNP [dm3] 3L_11233942_SNP [dm6]	G	A	1.938e^-4	0.996	INTRON Ir68a
2L	7558658	2L_7558658_SNP [dm3] 2L_7558658_SNP [dm6]	C	G	1.965e^-4	0.996	INTRON RapGAP1
2R	1361591	2R_1361591_SNP [dm3] 2R_5474086_SNP [dm6]	A	T	1.966e^-4	0.996	INTRON CG30440	transposable element FlyBase
3L	10860517	3L_10860517_SNP [dm3] 3L_10867417_SNP [dm6]	A	C	1.997e^-4	0.996	INTRON tna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	17228152	2R_17228152_SNP [dm3] 2R_21340647_SNP [dm6]	A	G	1.999e^-4	0.996	INTRON dom	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8216548	3L_8216548_INS [dm3] 3L_8223448_INS [dm6]	C	CT	2.013e^-4	0.996	DOWNSTREAM CG13678 INTERGENIC	TF binding site mE1_TFBS_cad
2R	19702944	2R_19702944_INS [dm3] 2R_23815421_INS [dm6]	A	AA	2.013e^-4	0.996	DOWNSTREAM CR44807 INTRON CG4797
2R	19702953	2R_19702953_SNP [dm3] 2R_23815430_SNP [dm6]	T	A	2.013e^-4	0.996	DOWNSTREAM CR44807 INTRON CG4797
2R	19702955	2R_19702955_SNP [dm3] 2R_23815432_SNP [dm6]	C	T	2.013e^-4	0.996	DOWNSTREAM CR44807 INTRON CG4797
X	6747740	X_6747740_SNP [dm3] X_6853707_SNP [dm6]	T	G	2.018e^-4	0.996	UPSTREAM CG14434 INTRON CG14434	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	15257074	3R_15257074_SNP [dm3] 3R_19431352_SNP [dm6]	G	T	2.019e^-4	0.996	INTRON CG31221
3L	9844525	3L_9844525_SNP [dm3] 3L_9851425_SNP [dm6]	G	T	2.036e^-4	0.996	INTRON RasGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8026769	2L_8026769_SNP [dm3] 2L_8026769_SNP [dm6]	T	C	2.043e^-4	0.996	SYNONYMOUS_CODING Tg DOWNSTREAM CG7367
3L	9604064	3L_9604064_SNP [dm3] 3L_9610964_SNP [dm6]	T	C	2.045e^-4	0.996	INTRON CG3280
3L	9604208	3L_9604208_SNP [dm3] 3L_9611108_SNP [dm6]	C	G	2.045e^-4	0.996	INTRON CG3280
3L	9604579	3L_9604579_SNP [dm3] 3L_9611479_SNP [dm6]	C	T	2.045e^-4	0.996	SYNONYMOUS_CODING CG3280	TF binding site mE1_TFBS_HSA
3L	9605948	3L_9605948_SNP [dm3] 3L_9612848_SNP [dm6]	C	T	2.045e^-4	0.996	NON_SYNONYMOUS_CODING CG3280	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17543861	3R_17543861_SNP [dm3] 3R_21718139_SNP [dm6]	A	C	2.050e^-4	0.996	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
2R	14187906	2R_14187906_SNP [dm3] 2R_18300401_SNP [dm6]	C	A	2.051e^-4	0.996	DOWNSTREAM CG18540 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	9313165	X_9313165_SNP [dm3] X_9419132_SNP [dm6]	G	A	2.056e^-4	0.996	INTRON mgl
X	9313190	X_9313190_SNP [dm3] X_9419157_SNP [dm6]	A	G	2.056e^-4	0.996	INTRON mgl
3R	25204082	3R_25204082_SNP [dm3] 3R_29378360_SNP [dm6]	A	C	2.076e^-4	0.996	INTRON Ptp99A	TF binding site mE1_TFBS_HSA
2L	18887474	2L_18887474_SNP [dm3] 2L_18887474_SNP [dm6]	C	T	2.080e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	13980757	3L_13980757_SNP [dm3] 3L_13987657_SNP [dm6]	T	A	2.092e^-4	0.996	UPSTREAM CG9040 DOWNSTREAM CG17362 INTRON CG17364
3R	26602045	3R_26602045_SNP [dm3] 3R_30776323_SNP [dm6]	G	A	2.094e^-4	0.996	INTRON zfh1	TF binding site BDTNP1_TFBS_dl
2L	7099844	2L_7099844_SNP [dm3] 2L_7099844_SNP [dm6]	T	C	2.108e^-4	0.996	UTR_3_PRIME Pvf3	TF binding site BDTNP1_TFBS_sna
2R	18505537	2R_18505537_SNP [dm3] 2R_22618032_SNP [dm6]	G	A	2.109e^-4	0.996	INTRON CG33143	TF binding site mE1_TFBS_cad
3R	21207765	3R_21207765_SNP [dm3] 3R_25382043_SNP [dm6]	G	A	2.113e^-4	0.996	SYNONYMOUS_CODING alrm INTRON Fur1
3L	13037095	3L_13037095_SNP [dm3] 3L_13043995_SNP [dm6]	A	T	2.117e^-4	0.996	UTR_3_PRIME RpS4 UPSTREAM Syx13 DOWNSTREAM snoRNA:Psi28S-3327b & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	15245946	3R_15245946_SNP [dm3] 3R_19420224_SNP [dm6]	C	T	2.121e^-4	0.996	INTRON CG31221
3R	15257252	3R_15257252_SNP [dm3] 3R_19431530_SNP [dm6]	G	A	2.136e^-4	0.996	INTRON CG31221
3L	9675725	3L_9675725_SNP [dm3] 3L_9682625_SNP [dm6]	C	T	2.144e^-4	0.996	SYNONYMOUS_CODING alphaTub67C DOWNSTREAM CG6767	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7586837	2L_7586837_SNP [dm3] 2L_7586837_SNP [dm6]	T	A	2.160e^-4	0.996	INTERGENIC
3R	6492186	3R_6492186_SNP [dm3] 3R_10666464_SNP [dm6]	G	A	2.169e^-4	0.996	INTERGENIC
2R	17389244	2R_17389244_SNP [dm3] 2R_21501739_SNP [dm6]	A	T	2.171e^-4	0.996	UPSTREAM MESK2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
2R	19109576	2R_19109576_SNP [dm3] 2R_23222053_SNP [dm6]	T	A	2.176e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10715794	2R_10715794_SNP [dm3] 2R_14828289_SNP [dm6]	A	G	2.179e^-4	0.996	INTERGENIC
3L	14147422	3L_14147422_SNP [dm3] 3L_14154322_SNP [dm6]	G	A	2.185e^-4	0.996	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8652528	2L_8652528_SNP [dm3] 2L_8652528_SNP [dm6]	T	A	2.186e^-4	0.996	INTRON Sema-1a
3L	1700678	3L_1700678_SNP [dm3] 3L_1700678_SNP [dm6]	T	A	2.187e^-4	0.996	DOWNSTREAM CG13931 INTRON CG7991	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	19813560	2R_19813560_SNP [dm3] 2R_23926037_SNP [dm6]	C	T	2.193e^-4	0.996	SYNONYMOUS_CODING CG2812 UTR_3_PRIME Ca-P60A DOWNSTREAM kcc & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	1072784	3L_1072784_SNP [dm3] 3L_1072784_SNP [dm6]	C	A	2.203e^-4	0.996	INTRON bab1
3R	18897594	3R_18897594_SNP [dm3] 3R_23071872_SNP [dm6]	C	T	2.213e^-4	0.996	UTR_3_PRIME CG13830 DOWNSTREAM CG13830
X	18391766	X_18391766_SNP [dm3] X_18497733_SNP [dm6]	G	T	2.233e^-4	0.996	INTRON GalNAc-T2
X	12388116	X_12388116_SNP [dm3] X_12494083_SNP [dm6]	G	A	2.243e^-4	0.996	DOWNSTREAM Mks1 INTERGENIC
3R	11551441	3R_11551441_SNP [dm3] 3R_15725719_SNP [dm6]	A	G	2.261e^-4	0.996	INTERGENIC
3L	12465471	3L_12465471_SNP [dm3] 3L_12472371_SNP [dm6]	G	T	2.264e^-4	0.996	INTRON CG10616	TF binding site mE1_TFBS_cad
2L	3655872	2L_3655872_SNP [dm3] 2L_3655872_SNP [dm6]	A	C	2.271e^-4	0.996	INTRON for	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	7501404	X_7501404_SNP [dm3] X_7607371_SNP [dm6]	A	T	2.282e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_Trl
3R	19470378	3R_19470378_SNP [dm3] 3R_23644656_SNP [dm6]	G	A	2.290e^-4	0.996	INTRON CG31145
2L	8652378	2L_8652378_SNP [dm3] 2L_8652378_SNP [dm6]	A	G	2.308e^-4	0.996	INTRON Sema-1a
3R	16956017	3R_16956017_SNP [dm3] 3R_21130295_SNP [dm6]	T	A	2.330e^-4	0.996	UTR_5_PRIME Ice2 UPSTREAM Obp93a DOWNSTREAM CG5793
3R	16956029	3R_16956029_SNP [dm3] 3R_21130307_SNP [dm6]	T	A	2.330e^-4	0.996	UTR_5_PRIME Ice2 UPSTREAM Obp93a DOWNSTREAM CG5793
3L	755344	3L_755344_SNP [dm3] 3L_755344_SNP [dm6]	A	G	2.349e^-4	0.996	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	759460	3L_759460_SNP [dm3] 3L_759460_SNP [dm6]	G	A	2.349e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	10998820	2R_10998820_SNP [dm3] 2R_15111315_SNP [dm6]	A	G	2.404e^-4	0.996	INTERGENIC
2L	2263767	2L_2263767_SNP [dm3] 2L_2263767_SNP [dm6]	G	A	2.406e^-4	0.996	DOWNSTREAM CG34049 INTRON CG4270
2L	18887464	2L_18887464_SNP [dm3] 2L_18887464_SNP [dm6]	G	T	2.409e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	12934145	3L_12934145_DEL [dm3] 3L_12941045_DEL [dm6]	TTTA	T	2.425e^-4	0.996	INTERGENIC
3R	21888452	3R_21888452_INS [dm3] 3R_26062730_INS [dm6]	G	GTTGTTGTTGCTG...	2.432e^-4	0.996	UTR_5_PRIME CG14551 UPSTREAM CG14551
2L	2429475	2L_2429475_INS [dm3] 2L_2429475_INS [dm6]	T	TCAAT	2.434e^-4	0.996	INTRON dpp
2L	16822778	2L_16822778_SNP [dm3] 2L_16822778_SNP [dm6]	T	A	2.442e^-4	0.996	SYNONYMOUS_CODING Cas INTRON mdy
3L	3273474	3L_3273474_DEL [dm3] 3L_3273474_DEL [dm6]	GGTGTGTTGCCAT...	G	2.444e^-4	0.996	INTRON CG14960
3L	11715659	3L_11715659_SNP [dm3] 3L_11722559_SNP [dm6]	G	A	2.450e^-4	0.996	INTRON Bmcp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13083893	3L_13083893_SNP [dm3] 3L_13090793_SNP [dm6]	G	T	2.469e^-4	0.996	UPSTREAM CG11251 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	13736076	3L_13736076_SNP [dm3] 3L_13742976_SNP [dm6]	C	A	2.474e^-4	0.996	INTRON bru-3
2L	7241235	2L_7241235_SNP [dm3] 2L_7241235_SNP [dm6]	T	C	2.476e^-4	0.996	UPSTREAM Ndae1 INTRON Ndae1
3L	22021967	3L_22021967_SNP [dm3] 3L_22028867_SNP [dm6]	C	T	2.478e^-4	0.996	UPSTREAM CG7140 DOWNSTREAM CG43392 INTERGENIC
3L	22021972	3L_22021972_SNP [dm3] 3L_22028872_SNP [dm6]	T	C	2.478e^-4	0.996	UPSTREAM CG7140 DOWNSTREAM CG43392 INTERGENIC
2L	346425	2L_346425_SNP [dm3] 2L_346425_SNP [dm6]	T	C	2.483e^-4	0.996	UTR_3_PRIME Plc21C DOWNSTREAM Plc21C	TF binding site BDTNP1_TFBS_dl
3R	17543867	3R_17543867_INS [dm3] 3R_21718145_INS [dm6]	C	CCTCCTAAC	2.513e^-4	0.996	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
X	8220926	X_8220926_DEL [dm3] X_8326893_DEL [dm6]	GG	G	2.515e^-4	0.996	INTRON nAChRalpha3
2L	16558327	2L_16558327_SNP [dm3] 2L_16558327_SNP [dm6]	A	G	2.546e^-4	0.996	NON_SYNONYMOUS_CODING CG42389	TF binding site mE1_TFBS_cad
2L	9560862	2L_9560862_INS [dm3] 2L_9560862_INS [dm6]	T	TT	2.578e^-4	0.996	UPSTREAM jp INTRON jp
3R	16709654	3R_16709654_SNP [dm3] 3R_20883932_SNP [dm6]	T	C	2.581e^-4	0.996	INTERGENIC
2L	12146154	2L_12146154_SNP [dm3] 2L_12146154_SNP [dm6]	A	C	2.593e^-4	0.996	INTRON CG31760
3L	3523147	3L_3523147_SNP [dm3] 3L_3523147_SNP [dm6]	C	G	2.605e^-4	0.996	INTRON Eip63E EXON CR45043
2R	16899188	2R_16899188_SNP [dm3] 2R_21011683_SNP [dm6]	G	T	2.619e^-4	0.996	UPSTREAM CG9346 INTRON grau	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	7835447	2R_7835447_DEL [dm3] 2R_11947942_DEL [dm6]	TTT	T	2.635e^-4	0.996	INTRON CG13188
2R	1326148	2R_1326148_SNP [dm3] 2R_5438643_SNP [dm6]	T	C	2.641e^-4	0.996	INTRON laccase2
X	12275340	X_12275340_SNP [dm3] X_12381307_SNP [dm6]	T	C	2.645e^-4	0.996	INTERGENIC
2R	12134729	2R_12134729_SNP [dm3] 2R_16247224_SNP [dm6]	C	G	2.653e^-4	0.996	INTRON CngA
2R	9964065	2R_9964065_SNP [dm3] 2R_14076560_SNP [dm6]	G	T	2.659e^-4	0.996	INTRON Prosap
2R	16428377	2R_16428377_SNP [dm3] 2R_20540872_SNP [dm6]	T	C	2.680e^-4	0.996	UPSTREAM CG13428 EXON CR44652	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	10860569	3L_10860569_SNP [dm3] 3L_10867469_SNP [dm6]	A	C	2.688e^-4	0.996	INTRON tna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	17841313	3R_17841313_SNP [dm3] 3R_22015591_SNP [dm6]	T	C	2.691e^-4	0.996	SYNONYMOUS_CODING CG6332 DOWNSTREAM CG6439	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	8821004	2L_8821004_SNP [dm3] 2L_8821004_SNP [dm6]	A	T	2.714e^-4	0.996	INTERGENIC
3R	15156377	3R_15156377_SNP [dm3] 3R_19330655_SNP [dm6]	T	C	2.724e^-4	0.996	EXON CR43258	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17323326	X_17323326_SNP [dm3] X_17429293_SNP [dm6]	G	T	2.740e^-4	0.996	DOWNSTREAM CG5613 INTRON CG12994
3L	9980938	3L_9980938_SNP [dm3] 3L_9987838_SNP [dm6]	G	T	2.763e^-4	0.996	INTRON dpr6
X	6679129	X_6679129_SNP [dm3] X_6785096_SNP [dm6]	T	A	2.785e^-4	0.996	INTRON C3G	TF binding site mE1_TFBS_HSA
3L	9847460	3L_9847460_SNP [dm3] 3L_9854360_SNP [dm6]	C	A	2.794e^-4	0.996	INTRON RasGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	9847561	3L_9847561_SNP [dm3] 3L_9854461_SNP [dm6]	T	A	2.794e^-4	0.996	INTRON RasGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	9751615	3L_9751615_SNP [dm3] 3L_9758515_SNP [dm6]	C	T	2.796e^-4	0.996	INTRON CG42268
3L	11387497	3L_11387497_SNP [dm3] 3L_11394397_SNP [dm6]	G	T	2.804e^-4	0.996	UPSTREAM CG11726 INTERGENIC
3L	10860644	3L_10860644_SNP [dm3] 3L_10867544_SNP [dm6]	T	G	2.805e^-4	0.996	INTRON tna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	22021397	3L_22021397_SNP [dm3] 3L_22028297_SNP [dm6]	A	C	2.806e^-4	0.996	UTR_5_PRIME CG7140
2L	7986387	2L_7986387_SNP [dm3] 2L_7986387_SNP [dm6]	A	T	2.815e^-4	0.996	SYNONYMOUS_CODING CG7231 DOWNSTREAM pes
2R	6225720	2R_6225720_SNP [dm3] 2R_10338215_SNP [dm6]	G	A	2.831e^-4	0.996	INTRON CG42732
2R	19078687	2R_19078687_SNP [dm3] 2R_23191164_SNP [dm6]	G	A	2.851e^-4	0.996	SYNONYMOUS_CODING CG34371	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	18562981	3R_18562981_SNP [dm3] 3R_22737259_SNP [dm6]	C	T	2.866e^-4	0.996	SYNONYMOUS_CODING Dcr-1	TF binding site mE1_TFBS_cad
2R	10710568	2R_10710568_SNP [dm3] 2R_14823063_SNP [dm6]	G	C	2.924e^-4	0.996	DOWNSTREAM CR45329 INTERGENIC
3L	1096481	3L_1096481_SNP [dm3] 3L_1096481_SNP [dm6]	T	C	2.930e^-4	0.996	INTRON bab1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	10423212	3L_10423212_SNP [dm3] 3L_10430112_SNP [dm6]	G	A	2.968e^-4	0.996	UTR_3_PRIME Ir67b
2R	12119542	2R_12119542_SNP [dm3] 2R_16232037_SNP [dm6]	C	A	2.976e^-4	0.996	NON_SYNONYMOUS_CODING CG15701	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	7932803	2R_7932803_SNP [dm3] 2R_12045298_SNP [dm6]	A	G	2.982e^-4	0.996	INTRON Drep-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	2335729	3L_2335729_SNP [dm3] 3L_2335729_SNP [dm6]	T	G	2.993e^-4	0.996	INTRON MsR1
3L	9497487	3L_9497487_SNP [dm3] 3L_9504387_SNP [dm6]	T	A	3.009e^-4	0.996	INTRON path	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	8146939	3L_8146939_SNP [dm3] 3L_8153839_SNP [dm6]	T	A	3.012e^-4	0.996	DOWNSTREAM CG42445 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7003700	3R_7003700_SNP [dm3] 3R_11177978_SNP [dm6]	A	T	3.026e^-4	0.996	DOWNSTREAM Ugt86Dh INTERGENIC
3R	20956547	3R_20956547_SNP [dm3] 3R_25130825_SNP [dm6]	G	C	3.044e^-4	0.996	UPSTREAM Bili INTRON Clbn
2R	4519484	2R_4519484_SNP [dm3] 2R_8631979_SNP [dm6]	G	A	3.052e^-4	0.996	UPSTREAM CG8635 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	4519495	2R_4519495_SNP [dm3] 2R_8631990_SNP [dm6]	T	C	3.052e^-4	0.996	UPSTREAM CG8635 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
X	2888398	X_2888398_SNP [dm3] X_2994365_SNP [dm6]	T	A	3.055e^-4	0.996	INTRON kirre	TF binding site mE1_TFBS_HSA
X	2888399	X_2888399_SNP [dm3] X_2994366_SNP [dm6]	C	G	3.055e^-4	0.996	INTRON kirre	TF binding site mE1_TFBS_HSA
X	2888401	X_2888401_DEL [dm3] X_2994368_DEL [dm6]	AA	A	3.055e^-4	0.996	INTRON kirre	TF binding site mE1_TFBS_HSA
2R	11470635	2R_11470635_DEL [dm3] 2R_15583130_DEL [dm6]	TGG	T	3.055e^-4	0.996	INTERGENIC
3R	26721809	3R_26721809_SNP [dm3] 3R_30896087_SNP [dm6]	T	A	3.064e^-4	0.996	INTRON Cyp4c3
2R	16361887	2R_16361887_SNP [dm3] 2R_20474382_SNP [dm6]	G	A	3.064e^-4	0.996	INTRON CG12484
X	19943628	X_19943628_SNP [dm3] X_20049595_SNP [dm6]	G	A	3.064e^-4	0.996	INTRON Dop2R
3L	13037034	3L_13037034_SNP [dm3] 3L_13043934_SNP [dm6]	G	A	3.065e^-4	0.996	UTR_3_PRIME RpS4 UPSTREAM Syx13 DOWNSTREAM snoRNA:Psi28S-3327b & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	13037049	3L_13037049_SNP [dm3] 3L_13043949_SNP [dm6]	G	A	3.065e^-4	0.996	UTR_3_PRIME RpS4 UPSTREAM Syx13 DOWNSTREAM snoRNA:Psi28S-3327b & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	25313060	3R_25313060_SNP [dm3] 3R_29487338_SNP [dm6]	A	G	3.088e^-4	0.996	SYNONYMOUS_CODING CG2321 DOWNSTREAM Ptp99A
3R	23676018	3R_23676018_DEL [dm3] 3R_27850296_DEL [dm6]	GTAAGTTATAAGC...	G	3.095e^-4	0.996	INTRON CG34353
2R	10712841	2R_10712841_DEL [dm3] 2R_14825336_DEL [dm6]	CCATTCGCTTTCTGTTC...	C	3.102e^-4	0.996	UPSTREAM CR45329 INTERGENIC
3L	774317	3L_774317_SNP [dm3] 3L_774317_SNP [dm6]	T	C	3.108e^-4	0.996	INTERGENIC	TF binding site mE1_TFBS_sens
2R	8443332	2R_8443332_SNP [dm3] 2R_12555827_SNP [dm6]	A	C	3.111e^-4	0.996	INTRON fra
2R	9455772	2R_9455772_SNP [dm3] 2R_13568267_SNP [dm6]	C	A	3.132e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
2R	9455773	2R_9455773_SNP [dm3] 2R_13568268_SNP [dm6]	T	C	3.132e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
3L	750320	3L_750320_SNP [dm3] 3L_750320_SNP [dm6]	A	C	3.144e^-4	0.996	INTRON hng3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco
3L	750328	3L_750328_SNP [dm3] 3L_750328_SNP [dm6]	A	G	3.144e^-4	0.996	INTRON hng3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco
3L	750337	3L_750337_INS [dm3] 3L_750337_INS [dm6]	T	TA	3.144e^-4	0.996	INTRON hng3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco
3L	750340	3L_750340_SNP [dm3] 3L_750340_SNP [dm6]	A	T	3.144e^-4	0.996	INTRON hng3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco
3R	10919722	3R_10919722_SNP [dm3] 3R_15094000_SNP [dm6]	T	G	3.156e^-4	0.996	INTRON CG6966	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_run mE1_TFBS_Trl
3L	10886967	3L_10886967_SNP [dm3] 3L_10893867_SNP [dm6]	T	C	3.158e^-4	0.996	UPSTREAM Cpr67Fb DOWNSTREAM Aps EXON CR45171
3L	18269874	3L_18269874_SNP [dm3] 3L_18276774_SNP [dm6]	T	G	3.159e^-4	0.996	INTERGENIC
2L	4212270	2L_4212270_SNP [dm3] 2L_4212270_SNP [dm6]	G	T	3.167e^-4	0.996	INTRON ft	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	11591882	3R_11591882_SNP [dm3] 3R_15766160_SNP [dm6]	C	T	3.188e^-4	0.996	DOWNSTREAM CG5623 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	11591902	3R_11591902_SNP [dm3] 3R_15766180_SNP [dm6]	A	G	3.188e^-4	0.996	DOWNSTREAM CG5623 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	25320657	3R_25320657_SNP [dm3] 3R_29494935_SNP [dm6]	T	G	3.190e^-4	0.996	START_GAINED CG2010 UTR_5_PRIME CG2010 DOWNSTREAM Diedel INTRON CG2010
2R	13381144	2R_13381144_SNP [dm3] 2R_17493639_SNP [dm6]	C	G	3.207e^-4	0.996	UPSTREAM CG30103 DOWNSTREAM NT5E-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
3R	8182714	3R_8182714_SNP [dm3] 3R_12356992_SNP [dm6]	A	G	3.221e^-4	0.996	UPSTREAM MBD-R2 INTERGENIC
3L	7002819	3L_7002819_SNP [dm3] 3L_7009719_SNP [dm6]	T	C	3.222e^-4	0.996	INTRON Mp
3R	25317545	3R_25317545_SNP [dm3] 3R_29491823_SNP [dm6]	G	A	3.241e^-4	0.996	SYNONYMOUS_CODING CG2310 UPSTREAM Spase12 DOWNSTREAM CG2006	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18476228	3R_18476228_DEL [dm3] 3R_22650506_DEL [dm6]	TT	T	3.242e^-4	0.996	INTRON CG45058
3L	16250777	3L_16250777_SNP [dm3] 3L_16257677_SNP [dm6]	A	G	3.251e^-4	0.996	UPSTREAM CG13054 INTERGENIC	TF binding site mE1_TFBS_cad
2R	1361595	2R_1361595_SNP [dm3] 2R_5474090_SNP [dm6]	A	G	3.255e^-4	0.996	INTRON CG30440	transposable element FlyBase
X	13039334	X_13039334_SNP [dm3] X_13145301_SNP [dm6]	C	A	3.258e^-4	0.996	INTRON CG32645
3R	27211696	3R_27211696_SNP [dm3] 3R_31385974_SNP [dm6]	C	T	3.301e^-4	0.996	INTRON CG1607
3L	18597728	3L_18597728_SNP [dm3] 3L_18604628_SNP [dm6]	T	C	3.328e^-4	0.996	SYNONYMOUS_CODING CG18234 UPSTREAM CG18233 INTRON CG4174 & 1 other
2L	1096402	2L_1096402_SNP [dm3] 2L_1096402_SNP [dm6]	T	C	3.340e^-4	0.996	INTRON CG4629	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1096406	2L_1096406_SNP [dm3] 2L_1096406_SNP [dm6]	T	C	3.340e^-4	0.996	INTRON CG4629	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	16558344	2L_16558344_SNP [dm3] 2L_16558344_SNP [dm6]	G	T	3.342e^-4	0.996	NON_SYNONYMOUS_CODING CG42389	TF binding site mE1_TFBS_cad
3R	26435813	3R_26435813_SNP [dm3] 3R_30610091_SNP [dm6]	T	A	3.349e^-4	0.996	UTR_3_PRIME CG31016
2L	4686844	2L_4686844_SNP [dm3] 2L_4686844_SNP [dm6]	A	C	3.353e^-4	0.996	SYNONYMOUS_CODING CG11929 UPSTREAM Elba3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2443105	3L_2443105_SNP [dm3] 3L_2443105_SNP [dm6]	C	A	3.387e^-4	0.996	INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6309523	3L_6309523_SNP [dm3] 3L_6316423_SNP [dm6]	G	A	3.413e^-4	0.996	INTERGENIC	regulatory region REDfly_CRMs
2R	16984519	2R_16984519_SNP [dm3] 2R_21097014_SNP [dm6]	G	A	3.418e^-4	0.996	UPSTREAM CG34396 INTRON CG34396 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	9440402	X_9440402_SNP [dm3] X_9546369_SNP [dm6]	T	C	3.430e^-4	0.996	INTRON CG32700
X	9440406	X_9440406_SNP [dm3] X_9546373_SNP [dm6]	A	C	3.430e^-4	0.996	INTRON CG32700
3L	13634136	3L_13634136_SNP [dm3] 3L_13641036_SNP [dm6]	G	A	3.446e^-4	0.996	INTRON bru-3	TF binding site mE1_TFBS_chinmo
2R	17102989	2R_17102989_SNP [dm3] 2R_21215484_SNP [dm6]	T	G	3.448e^-4	0.996	UTR_3_PRIME CG15661 UPSTREAM CG4302
2R	6593028	2R_6593028_SNP [dm3] 2R_10705523_SNP [dm6]	C	T	3.454e^-4	0.996	UPSTREAM stan INTRON stan
2R	8117666	2R_8117666_INS [dm3] 2R_12230161_INS [dm6]	T	TCGTTTTTT	3.458e^-4	0.996	UPSTREAM CG8854 INTERGENIC
2L	22241652	2L_22241652_SNP [dm3] 2L_22241652_SNP [dm6]	T	G	3.462e^-4	0.996	UTR_3_PRIME CG3262 DOWNSTREAM CG3262	transposable element FlyBase
2L	22241685	2L_22241685_SNP [dm3] 2L_22241685_SNP [dm6]	C	T	3.462e^-4	0.996	UTR_3_PRIME CG3262 DOWNSTREAM CG3262	transposable element FlyBase
2L	22241714	2L_22241714_SNP [dm3] 2L_22241714_SNP [dm6]	C	T	3.462e^-4	0.996	UTR_3_PRIME CG3262 DOWNSTREAM CG3262	transposable element FlyBase
2L	22241737	2L_22241737_SNP [dm3] 2L_22241737_SNP [dm6]	C	T	3.462e^-4	0.996	UTR_3_PRIME CG3262 DOWNSTREAM CG3262	transposable element FlyBase
2L	22241798	2L_22241798_SNP [dm3] 2L_22241798_SNP [dm6]	A	G	3.462e^-4	0.996	UTR_3_PRIME CG3262 DOWNSTREAM CG3262
2R	6225714	2R_6225714_DEL [dm3] 2R_10338209_DEL [dm6]	AT	C	3.465e^-4	0.996	INTRON CG42732
2R	8435418	2R_8435418_SNP [dm3] 2R_12547913_SNP [dm6]	C	G	3.473e^-4	0.996	INTRON fra	TF binding site mE1_TFBS_cad
2L	7006930	2L_7006930_SNP [dm3] 2L_7006930_SNP [dm6]	C	T	3.477e^-4	0.996	INTRON uif	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	6746350	2R_6746350_SNP [dm3] 2R_10858845_SNP [dm6]	T	G	3.487e^-4	0.996	UPSTREAM CR44302 INTRON CG30015
3L	19386664	3L_19386664_SNP [dm3] 3L_19393564_SNP [dm6]	T	A	3.491e^-4	0.996	INTRON CG32206
3L	12465453	3L_12465453_SNP [dm3] 3L_12472353_SNP [dm6]	A	C	3.495e^-4	0.996	INTRON CG10616	TF binding site mE1_TFBS_cad
2R	6669591	2R_6669591_SNP [dm3] 2R_10782086_SNP [dm6]	G	T	3.517e^-4	0.996	UPSTREAM CR44299 INTRON CG33144	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	7007123	2L_7007123_SNP [dm3] 2L_7007123_SNP [dm6]	C	G	3.539e^-4	0.996	INTRON uif	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	9312479	3L_9312479_SNP [dm3] 3L_9319379_SNP [dm6]	T	G	3.543e^-4	0.996	INTERGENIC
2R	19833846	2R_19833846_SNP [dm3] 2R_23946323_SNP [dm6]	A	T	3.545e^-4	0.996	DOWNSTREAM CG13565 INTRON Galphas
2R	19690202	2R_19690202_SNP [dm3] 2R_23802679_SNP [dm6]	G	T	3.558e^-4	0.996	UTR_3_PRIME CG30177
3R	16533505	3R_16533505_SNP [dm3] 3R_20707783_SNP [dm6]	A	T	3.566e^-4	0.996	INTRON Oamb
X	12399475	X_12399475_SNP [dm3] X_12505442_SNP [dm6]	G	C	3.588e^-4	0.996	INTRON CG2556
3R	16337711	3R_16337711_SNP [dm3] 3R_20511989_SNP [dm6]	T	G	3.594e^-4	0.996	INTRON CG4288	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	16337724	3R_16337724_SNP [dm3] 3R_20512002_SNP [dm6]	C	T	3.594e^-4	0.996	INTRON CG4288	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	19109789	2R_19109789_SNP [dm3] 2R_23222266_SNP [dm6]	C	T	3.597e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	21968136	3L_21968136_DEL [dm3] 3L_21975036_DEL [dm6]	AA	A	3.609e^-4	0.996	INTRON CG7470
2L	8063411	2L_8063411_SNP [dm3] 2L_8063411_SNP [dm6]	A	G	3.623e^-4	0.996	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	10585422	2R_10585422_SNP [dm3] 2R_14697917_SNP [dm6]	A	C	3.632e^-4	0.996	INTRON mspo
3R	14973223	3R_14973223_SNP [dm3] 3R_19147501_SNP [dm6]	T	A	3.649e^-4	0.996	UTR_5_PRIME Ppcs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	8943727	2R_8943727_SNP [dm3] 2R_13056222_SNP [dm6]	G	T	3.653e^-4	0.996	UTR_3_PRIME Drl-2 DOWNSTREAM Drl-2
2L	5867250	2L_5867250_SNP [dm3] 2L_5867250_SNP [dm6]	C	A	3.669e^-4	0.996	INTRON rau	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_sens
3L	15641512	3L_15641512_SNP [dm3] 3L_15648412_SNP [dm6]	T	C	3.672e^-4	0.996	UPSTREAM CG43083 & 1 other DOWNSTREAM Eig71Ea INTERGENIC
3L	15641514	3L_15641514_SNP [dm3] 3L_15648414_SNP [dm6]	G	C	3.672e^-4	0.996	UPSTREAM CG43083 & 1 other DOWNSTREAM Eig71Ea INTERGENIC
2L	16563966	2L_16563966_SNP [dm3] 2L_16563966_SNP [dm6]	A	T	3.674e^-4	0.996	INTRON CG42389
X	4838871	X_4838871_SNP [dm3] X_4944838_SNP [dm6]	C	T	3.683e^-4	0.996	INTRON Ptp4E
X	20707765	X_20707765_SNP [dm3] X_20836738_SNP [dm6]	C	G	3.685e^-4	0.996	INTRON shakB
3L	16471417	3L_16471417_SNP [dm3] 3L_16478317_SNP [dm6]	A	G	3.699e^-4	0.996	INTRON CG33158 & 1 other	TF binding site mE1_TFBS_HSA
3R	15257208	3R_15257208_SNP [dm3] 3R_19431486_SNP [dm6]	A	G	3.708e^-4	0.996	INTRON CG31221
X	16933827	X_16933827_DEL [dm3] X_17039794_DEL [dm6]	CC	C	3.721e^-4	0.996	INTRON CG45002
3R	11528310	3R_11528310_SNP [dm3] 3R_15702588_SNP [dm6]	A	G	3.722e^-4	0.996	INTERGENIC
3R	11398104	3R_11398104_SNP [dm3] 3R_15572382_SNP [dm6]	T	C	3.727e^-4	0.996	INTERGENIC
2L	7793338	2L_7793338_SNP [dm3] 2L_7793338_SNP [dm6]	C	T	3.741e^-4	0.996	SPLICE_SITE_REGION LKR INTRON LKR	TF binding site mE1_TFBS_cad
2R	5283670	2R_5283670_SNP [dm3] 2R_9396165_SNP [dm6]	T	C	3.744e^-4	0.996	START_GAINED CG8800 UTR_5_PRIME CG8800 DOWNSTREAM CG8801 & 1 other
3L	20900745	3L_20900745_SNP [dm3] 3L_20907645_SNP [dm6]	G	A	3.764e^-4	0.996	INTERGENIC	TF binding site mE1_TFBS_inv
2R	11445590	2R_11445590_SNP [dm3] 2R_15558085_SNP [dm6]	T	C	3.766e^-4	0.996	SYNONYMOUS_CODING CG12963 UPSTREAM CG12963 INTRON CG12963	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
X	12379396	X_12379396_SNP [dm3] X_12485363_SNP [dm6]	T	A	3.769e^-4	0.996	INTERGENIC
2R	3021693	2R_3021693_SNP [dm3] 2R_7134188_SNP [dm6]	G	A	3.770e^-4	0.996	UPSTREAM CR44443 INTERGENIC
3R	27420640	3R_27420640_SNP [dm3] 3R_31594918_SNP [dm6]	C	G	3.782e^-4	0.996	UTR_3_PRIME RpL6 DOWNSTREAM CG1774
2R	1322728	2R_1322728_SNP [dm3] 2R_5435223_SNP [dm6]	C	A	3.786e^-4	0.996	INTRON laccase2
2L	7559263	2L_7559263_SNP [dm3] 2L_7559263_SNP [dm6]	A	C	3.786e^-4	0.996	INTRON RapGAP1
3L	3484098	3L_3484098_SNP [dm3] 3L_3484098_SNP [dm6]	A	G	3.786e^-4	0.996	SYNONYMOUS_CODING CG43074 INTRON CG42324
X	9826975	X_9826975_SNP [dm3] X_9932942_SNP [dm6]	T	G	3.787e^-4	0.996	INTERGENIC
3L	3201827	3L_3201827_SNP [dm3] 3L_3201827_SNP [dm6]	G	A	3.794e^-4	0.996	SYNONYMOUS_CODING gry DOWNSTREAM CG32271
3R	21031679	3R_21031679_SNP [dm3] 3R_25205957_SNP [dm6]	G	A	3.801e^-4	0.996	INTRON CG13654 & 1 other	TF binding site mE1_TFBS_cad
3R	23673063	3R_23673063_SNP [dm3] 3R_27847341_SNP [dm6]	A	C	3.805e^-4	0.996	DOWNSTREAM Or98a INTRON CG34353
X	12201906	X_12201906_SNP [dm3] X_12307873_SNP [dm6]	G	A	3.807e^-4	0.996	INTRON Ten-a
3R	6930484	3R_6930484_SNP [dm3] 3R_11104762_SNP [dm6]	T	C	3.811e^-4	0.996	INTERGENIC
3R	24379784	3R_24379784_SNP [dm3] 3R_28554062_SNP [dm6]	T	A	3.813e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	2964349	2L_2964349_SNP [dm3] 2L_2964349_SNP [dm6]	C	T	3.826e^-4	0.996	UTR_3_PRIME Rbp9	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9373063	3L_9373063_DEL [dm3] 3L_9379963_DEL [dm6]	TATAC	T	3.855e^-4	0.996	UPSTREAM Hsp67Ba EXON CR43481	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1623770	2L_1623770_DEL [dm3] 2L_1623770_DEL [dm6]	TT	T	3.859e^-4	0.996	UPSTREAM CR44603 EXON CR44603
3R	11587974	3R_11587974_SNP [dm3] 3R_15762252_SNP [dm6]	A	G	3.860e^-4	0.996	UPSTREAM CG12784 INTERGENIC
3R	17616040	3R_17616040_SNP [dm3] 3R_21790318_SNP [dm6]	T	A	3.866e^-4	0.996	INTRON CASK	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7986390	2L_7986390_SNP [dm3] 2L_7986390_SNP [dm6]	C	T	3.872e^-4	0.996	SYNONYMOUS_CODING CG7231 DOWNSTREAM pes
2R	17775892	2R_17775892_SNP [dm3] 2R_21888387_SNP [dm6]	G	A	3.875e^-4	0.996	INTRON Fili
2L	2718854	2L_2718854_SNP [dm3] 2L_2718854_SNP [dm6]	G	A	3.884e^-4	0.996	SYNONYMOUS_CODING CG31690	TF binding site mE1_TFBS_chinmo
3L	3588186	3L_3588186_SNP [dm3] 3L_3588186_SNP [dm6]	T	C	3.904e^-4	0.996	INTRON Eip63E
3L	2442988	3L_2442988_SNP [dm3] 3L_2442988_SNP [dm6]	C	T	3.912e^-4	0.996	INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	5140601	3L_5140601_SNP [dm3] 3L_5147501_SNP [dm6]	T	C	3.918e^-4	0.996	SYNONYMOUS_CODING Aats-ala-m	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	4576054	3L_4576054_SNP [dm3] 3L_4576054_SNP [dm6]	G	T	3.927e^-4	0.996	INTRON CG42540
3L	11385612	3L_11385612_SNP [dm3] 3L_11392512_SNP [dm6]	C	T	3.959e^-4	0.996	INTERGENIC
2L	6951194	2L_6951194_SNP [dm3] 2L_6951194_SNP [dm6]	A	T	3.959e^-4	0.996	SYNONYMOUS_CODING SA UPSTREAM Gas41	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	6951101	2L_6951101_SNP [dm3] 2L_6951101_SNP [dm6]	T	C	3.961e^-4	0.996	SYNONYMOUS_CODING SA UPSTREAM Gas41	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	8000954	2L_8000954_SNP [dm3] 2L_8000954_SNP [dm6]	G	A	3.962e^-4	0.996	INTRON Wwox
2L	3134975	2L_3134975_DEL [dm3] 2L_3134975_DEL [dm6]	CC	C	3.970e^-4	0.996	INTRON toc
2R	12011465	2R_12011465_SNP [dm3] 2R_16123960_SNP [dm6]	T	C	3.983e^-4	0.996	INTRON CG30095	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco
3L	13083989	3L_13083989_SNP [dm3] 3L_13090889_SNP [dm6]	T	A	3.983e^-4	0.996	UPSTREAM CG11251 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	13084013	3L_13084013_SNP [dm3] 3L_13090913_SNP [dm6]	A	G	3.983e^-4	0.996	UPSTREAM CG11251 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	21999043	2L_21999043_SNP [dm3] 2L_21999043_SNP [dm6]	T	A	3.985e^-4	0.996	DOWNSTREAM CR44916 INTERGENIC
2R	9722905	2R_9722905_SNP [dm3] 2R_13835400_SNP [dm6]	G	A	3.986e^-4	0.996	UPSTREAM CG6337 INTERGENIC
3L	15938223	3L_15938223_SNP [dm3] 3L_15945123_SNP [dm6]	A	G	4.013e^-4	0.996	INTRON Pka-C3
2R	7837831	2R_7837831_DEL [dm3] 2R_11950326_DEL [dm6]	AA	A	4.032e^-4	0.996	INTRON CG13188
3R	10919727	3R_10919727_SNP [dm3] 3R_15094005_SNP [dm6]	A	G	4.037e^-4	0.996	INTRON CG6966	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_run mE1_TFBS_Trl
2R	3937308	2R_3937308_SNP [dm3] 2R_8049803_SNP [dm6]	A	C	4.039e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10590482	3R_10590482_SNP [dm3] 3R_14764760_SNP [dm6]	G	C	4.048e^-4	0.996	INTRON jvl
2L	3659339	2L_3659339_SNP [dm3] 2L_3659339_SNP [dm6]	C	T	4.058e^-4	0.996	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	9962096	2L_9962096_SNP [dm3] 2L_9962096_SNP [dm6]	G	C	4.071e^-4	0.996	INTRON CG5850 EXON CR43683	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	3934145	2R_3934145_SNP [dm3] 2R_8046640_SNP [dm6]	C	T	4.096e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	20608962	X_20608962_SNP [dm3] X_20737935_SNP [dm6]	A	G	4.104e^-4	0.996	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6517400	X_6517400_SNP [dm3] X_6623367_SNP [dm6]	T	A	4.116e^-4	0.996	INTRON pigs	TF binding site mE1_TFBS_HSA
3L	937894	3L_937894_SNP [dm3] 3L_937894_SNP [dm6]	G	A	4.119e^-4	0.996	INTRON Glut1
3R	14600461	3R_14600461_SNP [dm3] 3R_18774739_SNP [dm6]	T	G	4.125e^-4	0.996	INTRON CG7720
3R	20220181	3R_20220181_SNP [dm3] 3R_24394459_SNP [dm6]	C	A	4.143e^-4	0.996	UTR_3_PRIME nAChRalpha1 DOWNSTREAM CG13616
2L	12700500	2L_12700500_SNP [dm3] 2L_12700500_SNP [dm6]	C	A	4.147e^-4	0.996	SYNONYMOUS_CODING CG17036 DOWNSTREAM CG5776	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3175077	2L_3175077_SNP [dm3] 2L_3175077_SNP [dm6]	G	A	4.147e^-4	0.996	DOWNSTREAM CG34393 & 1 other INTERGENIC
2L	21822643	2L_21822643_SNP [dm3] 2L_21822643_SNP [dm6]	T	C	4.151e^-4	0.996	DOWNSTREAM CR44786 INTERGENIC	TF binding site mE1_TFBS_cad
3R	22760592	3R_22760592_DEL [dm3] 3R_26934870_DEL [dm6]	CCTGGGC	C	4.158e^-4	0.996	INTRON sda
2L	7586743	2L_7586743_DEL [dm3] 2L_7586743_DEL [dm6]	GG	G	4.160e^-4	0.996	INTERGENIC
2L	7586775	2L_7586775_SNP [dm3] 2L_7586775_SNP [dm6]	T	A	4.160e^-4	0.996	INTERGENIC
3L	13083936	3L_13083936_SNP [dm3] 3L_13090836_SNP [dm6]	T	G	4.164e^-4	0.996	UPSTREAM CG11251 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	13083951	3L_13083951_SNP [dm3] 3L_13090851_SNP [dm6]	G	A	4.164e^-4	0.996	UPSTREAM CG11251 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	27212106	3R_27212106_SNP [dm3] 3R_31386384_SNP [dm6]	T	C	4.170e^-4	0.996	INTRON CG1607
2R	13355520	2R_13355520_SNP [dm3] 2R_17468015_SNP [dm6]	C	G	4.183e^-4	0.996	INTRON Tes	TF binding site mE1_TFBS_sens
3R	26364725	3R_26364725_SNP [dm3] 3R_30539003_SNP [dm6]	G	A	4.185e^-4	0.996	UTR_5_PRIME tmod INTRON tmod
2L	7007139	2L_7007139_SNP [dm3] 2L_7007139_SNP [dm6]	C	A	4.186e^-4	0.996	INTRON uif	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
X	19903306	X_19903306_SNP [dm3] X_20009273_SNP [dm6]	A	T	4.201e^-4	0.996	INTRON Dop2R
3L	9872788	3L_9872788_SNP [dm3] 3L_9879688_SNP [dm6]	A	T	4.206e^-4	0.996	INTRON CG34382
2L	13591589	2L_13591589_SNP [dm3] 2L_13591589_SNP [dm6]	T	G	4.217e^-4	0.996	INTRON kuz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3106250	3L_3106250_SNP [dm3] 3L_3106250_SNP [dm6]	C	A	4.227e^-4	0.996	INTRON Cht7
2L	8652529	2L_8652529_SNP [dm3] 2L_8652529_SNP [dm6]	T	A	4.236e^-4	0.996	INTRON Sema-1a
3R	16065478	3R_16065478_SNP [dm3] 3R_20239756_SNP [dm6]	G	A	4.245e^-4	0.996	INTRON Nlg4
3L	14069565	3L_14069565_SNP [dm3] 3L_14076465_SNP [dm6]	G	A	4.257e^-4	0.996	UPSTREAM btl DOWNSTREAM Pex1 INTRON btl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16062500	3L_16062500_SNP [dm3] 3L_16069400_SNP [dm6]	A	T	4.259e^-4	0.996	INTRON Mbs
3R	25449307	3R_25449307_SNP [dm3] 3R_29623585_SNP [dm6]	G	A	4.279e^-4	0.996	INTERGENIC
2R	13351480	2R_13351480_SNP [dm3] 2R_17463975_SNP [dm6]	T	A	4.281e^-4	0.996	SYNONYMOUS_CODING CG14478	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	21850004	X_21850004_SNP [dm3] X_22448168_SNP [dm6]	G	A	4.322e^-4	0.996	DOWNSTREAM CG14621 INTRON CG14615
X	8477222	X_8477222_SNP [dm3] X_8583189_SNP [dm6]	G	A	4.325e^-4	0.996	INTRON CG12065
2L	7985976	2L_7985976_SNP [dm3] 2L_7985976_SNP [dm6]	C	T	4.332e^-4	0.996	SYNONYMOUS_CODING CG7231 DOWNSTREAM pes	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17315450	2R_17315450_SNP [dm3] 2R_21427945_SNP [dm6]	A	G	4.347e^-4	0.996	INTRON Sdc
2R	12759017	2R_12759017_SNP [dm3] 2R_16871512_SNP [dm6]	G	T	4.353e^-4	0.996	SPLICE_SITE_REGION CG6426 SYNONYMOUS_CODING CG6426 UPSTREAM CG6421	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	12759026	2R_12759026_SNP [dm3] 2R_16871521_SNP [dm6]	T	C	4.353e^-4	0.996	SYNONYMOUS_CODING CG6426 UPSTREAM CG6421	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	2079325	2L_2079325_SNP [dm3] 2L_2079325_SNP [dm6]	A	G	4.381e^-4	0.996	UPSTREAM CG12674 INTRON dpr3
2L	7985813	2L_7985813_SNP [dm3] 2L_7985813_SNP [dm6]	A	G	4.384e^-4	0.996	DOWNSTREAM pes INTRON CG7231	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	11077216	3R_11077216_DEL [dm3] 3R_15251494_DEL [dm6]	CATAC	C	4.413e^-4	0.996	INTRON CG42404	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17543949	3R_17543949_SNP [dm3] 3R_21718227_SNP [dm6]	T	A	4.416e^-4	0.996	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
3R	21257908	3R_21257908_SNP [dm3] 3R_25432186_SNP [dm6]	T	G	4.421e^-4	0.996	INTRON Fur1
2R	9606117	2R_9606117_SNP [dm3] 2R_13718612_SNP [dm6]	C	A	4.430e^-4	0.996	INTRON fas	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	11528217	3R_11528217_SNP [dm3] 3R_15702495_SNP [dm6]	C	T	4.464e^-4	0.996	INTERGENIC
3L	16467971	3L_16467971_SNP [dm3] 3L_16474871_SNP [dm6]	A	T	4.496e^-4	0.996	INTRON CG33158 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_inv mE1_TFBS_sens
2L	5940121	2L_5940121_SNP [dm3] 2L_5940121_SNP [dm6]	G	A	4.505e^-4	0.996	DOWNSTREAM dsf EXON CR45288
2L	15110646	2L_15110646_SNP [dm3] 2L_15110646_SNP [dm6]	A	C	4.509e^-4	0.996	INTRON CG15269	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	15110681	2L_15110681_SNP [dm3] 2L_15110681_SNP [dm6]	C	T	4.509e^-4	0.996	INTRON CG15269	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	11049938	3L_11049938_DEL [dm3] 3L_11056838_DEL [dm6]	TC	T	4.509e^-4	0.996	UPSTREAM CG7888 INTRON CG7888
3L	11049941	3L_11049941_SNP [dm3] 3L_11056841_SNP [dm6]	A	T	4.509e^-4	0.996	UPSTREAM CG7888 INTRON CG7888
3L	11049942	3L_11049942_SNP [dm3] 3L_11056842_SNP [dm6]	C	G	4.509e^-4	0.996	UPSTREAM CG7888 INTRON CG7888
3L	11049943	3L_11049943_DEL [dm3] 3L_11056843_DEL [dm6]	TC	T	4.509e^-4	0.996	UPSTREAM CG7888 INTRON CG7888
3L	11049946	3L_11049946_SNP [dm3] 3L_11056846_SNP [dm6]	A	G	4.509e^-4	0.996	UPSTREAM CG7888 INTRON CG7888
3L	11049950	3L_11049950_SNP [dm3] 3L_11056850_SNP [dm6]	G	A	4.509e^-4	0.996	UPSTREAM CG7888 INTRON CG7888
3L	11049951	3L_11049951_SNP [dm3] 3L_11056851_SNP [dm6]	C	T	4.509e^-4	0.996	UPSTREAM CG7888 INTRON CG7888
3L	11049953	3L_11049953_MNP [dm3] 3L_11056853_MNP [dm6]	TAT	AGG	4.509e^-4	0.996	UPSTREAM CG7888 INTRON CG7888
3R	11648292	3R_11648292_SNP [dm3] 3R_15822570_SNP [dm6]	T	C	4.509e^-4	0.996	NON_SYNONYMOUS_CODING alpha-Man-IIb DOWNSTREAM rec	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8354397	X_8354397_SNP [dm3] X_8460364_SNP [dm6]	T	G	4.509e^-4	0.996	INTRON CG15347	transposable element FlyBase
3L	16735984	3L_16735984_SNP [dm3] 3L_16742884_SNP [dm6]	A	C	4.551e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	3187718	3R_3187718_SNP [dm3] 3R_7361996_SNP [dm6]	C	T	4.552e^-4	0.996	NON_SYNONYMOUS_CODING CG17944
2R	1378679	2R_1378679_SNP [dm3] 2R_5491174_SNP [dm6]	G	T	4.552e^-4	0.996	INTRON CG30440
3L	7002809	3L_7002809_SNP [dm3] 3L_7009709_SNP [dm6]	C	A	4.553e^-4	0.996	INTRON Mp
3R	25490608	3R_25490608_SNP [dm3] 3R_29664886_SNP [dm6]	A	C	4.572e^-4	0.996	SYNONYMOUS_CODING ppk21	TF binding site mE1_TFBS_sens
3L	13978557	3L_13978557_INS [dm3] 3L_13985457_INS [dm6]	G	GTGGCTGCAGTTGCAATTGC...	4.582e^-4	0.996	CODON_INSERTION CG17364	TF binding site mE1_TFBS_cad
2L	3659330	2L_3659330_SNP [dm3] 2L_3659330_SNP [dm6]	A	G	4.588e^-4	0.996	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	752094	3L_752094_SNP [dm3] 3L_752094_SNP [dm6]	A	G	4.598e^-4	0.996	INTRON hng3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
X	12387038	X_12387038_SNP [dm3] X_12493005_SNP [dm6]	C	A	4.601e^-4	0.996	DOWNSTREAM Lsp1alpha INTERGENIC
3L	9873037	3L_9873037_SNP [dm3] 3L_9879937_SNP [dm6]	G	A	4.611e^-4	0.996	INTRON CG34382
3R	17774614	3R_17774614_SNP [dm3] 3R_21948892_SNP [dm6]	G	A	4.625e^-4	0.996	UPSTREAM Eip93F INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	6255512	2L_6255512_SNP [dm3] 2L_6255512_SNP [dm6]	G	T	4.638e^-4	0.996	UPSTREAM CG9486 INTRON Ddr
3R	22284051	3R_22284051_SNP [dm3] 3R_26458329_SNP [dm6]	C	G	4.671e^-4	0.996	UTR_5_PRIME CG14238
2R	18294779	2R_18294779_SNP [dm3] 2R_22407274_SNP [dm6]	C	G	4.679e^-4	0.996	NON_SYNONYMOUS_CODING CG6044	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	7405935	2L_7405935_SNP [dm3] 2L_7405935_SNP [dm6]	G	A	4.686e^-4	0.996	INTRON CG5177
2R	1361967	2R_1361967_SNP [dm3] 2R_5474462_SNP [dm6]	T	G	4.689e^-4	0.996	INTRON CG30440	transposable element FlyBase
2R	1361969	2R_1361969_INS [dm3] 2R_5474464_INS [dm6]	T	TAGATAGATAGATATC...	4.689e^-4	0.996	INTRON CG30440	transposable element FlyBase
2R	10266327	2R_10266327_SNP [dm3] 2R_14378822_SNP [dm6]	C	T	4.700e^-4	0.996	INTRON Dh44-R1
3R	25590972	3R_25590972_SNP [dm3] 3R_29765250_SNP [dm6]	C	T	4.707e^-4	0.996	UPSTREAM kay INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16984873	2R_16984873_SNP [dm3] 2R_21097368_SNP [dm6]	T	C	4.725e^-4	0.996	UPSTREAM CG34396 & 1 other INTRON CG34396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5044819	2L_5044819_INS [dm3] 2L_5044819_INS [dm6]	C	CAGATATGCATTAATATACC...	4.725e^-4	0.996	UPSTREAM CG31650 & 2 others INTRON CG44000 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	15083644	2L_15083644_SNP [dm3] 2L_15083644_SNP [dm6]	C	G	4.750e^-4	0.996	INTRON CG15270
X	6752571	X_6752571_SNP [dm3] X_6858538_SNP [dm6]	A	G	4.754e^-4	0.996	INTRON CG14434	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	12566997	3L_12566997_SNP [dm3] 3L_12573897_SNP [dm6]	T	G	4.766e^-4	0.996	INTERGENIC
3L	13551908	3L_13551908_SNP [dm3] 3L_13558808_SNP [dm6]	C	G	4.783e^-4	0.996	DOWNSTREAM CR45178 INTRON bru-3
2R	4614305	2R_4614305_INS [dm3] 2R_8726800_INS [dm6]	T	CCCA	4.795e^-4	0.996	INTRON gcl
3R	24404540	3R_24404540_SNP [dm3] 3R_28578818_SNP [dm6]	G	C	4.797e^-4	0.996	INTERGENIC	regulatory region REDfly_CRMs
2R	8430995	2R_8430995_SNP [dm3] 2R_12543490_SNP [dm6]	C	A	4.824e^-4	0.996	INTRON fra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	13686085	2L_13686085_SNP [dm3] 2L_13686085_SNP [dm6]	T	C	4.825e^-4	0.996	INTRON CG31814
2R	6746358	2R_6746358_SNP [dm3] 2R_10858853_SNP [dm6]	T	G	4.829e^-4	0.996	UPSTREAM CR44302 INTRON CG30015
3L	13080563	3L_13080563_SNP [dm3] 3L_13087463_SNP [dm6]	A	G	4.831e^-4	0.996	UPSTREAM CR45749 & 1 other INTERGENIC
3L	16471507	3L_16471507_SNP [dm3] 3L_16478407_SNP [dm6]	T	G	4.833e^-4	0.996	INTRON CG33158 & 1 other	TF binding site mE1_TFBS_HSA
3R	3187001	3R_3187001_SNP [dm3] 3R_7361279_SNP [dm6]	A	G	4.844e^-4	0.996	DOWNSTREAM CG17944 INTERGENIC
3L	21801607	3L_21801607_SNP [dm3] 3L_21808507_SNP [dm6]	C	T	4.875e^-4	0.996	UPSTREAM eg INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	4968301	3R_4968301_SNP [dm3] 3R_9142579_SNP [dm6]	C	A	4.876e^-4	0.996	INTRON pum
3R	4968309	3R_4968309_SNP [dm3] 3R_9142587_SNP [dm6]	C	T	4.876e^-4	0.996	INTRON pum
2R	10712878	2R_10712878_SNP [dm3] 2R_14825373_SNP [dm6]	T	A	4.886e^-4	0.996	INTERGENIC
2R	10713052	2R_10713052_SNP [dm3] 2R_14825547_SNP [dm6]	C	T	4.886e^-4	0.996	INTERGENIC
3R	25320658	3R_25320658_SNP [dm3] 3R_29494936_SNP [dm6]	T	C	4.902e^-4	0.996	UTR_5_PRIME CG2010 DOWNSTREAM Diedel INTRON CG2010
2R	12014023	2R_12014023_SNP [dm3] 2R_16126518_SNP [dm6]	G	A	4.913e^-4	0.996	INTRON spin	TF binding site BDTNP1_TFBS_dl
2R	12014024	2R_12014024_SNP [dm3] 2R_16126519_SNP [dm6]	T	G	4.913e^-4	0.996	INTRON spin	TF binding site BDTNP1_TFBS_dl
3R	12120243	3R_12120243_SNP [dm3] 3R_16294521_SNP [dm6]	G	A	4.951e^-4	0.996	INTRON gish
3L	13084024	3L_13084024_SNP [dm3] 3L_13090924_SNP [dm6]	T	A	4.952e^-4	0.996	UPSTREAM CG11251 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	11590088	3R_11590088_SNP [dm3] 3R_15764366_SNP [dm6]	T	A	4.961e^-4	0.996	DOWNSTREAM CG12784 INTERGENIC
3R	11590104	3R_11590104_SNP [dm3] 3R_15764382_SNP [dm6]	C	T	4.961e^-4	0.996	DOWNSTREAM CG12784 INTERGENIC
3L	10845662	3L_10845662_SNP [dm3] 3L_10852562_SNP [dm6]	G	C	4.962e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	17543987	3R_17543987_SNP [dm3] 3R_21718265_SNP [dm6]	C	T	4.967e^-4	0.996	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
3L	14065964	3L_14065964_SNP [dm3] 3L_14072864_SNP [dm6]	C	T	4.969e^-4	0.996	SYNONYMOUS_CODING Pex1
3R	3144406	3R_3144406_SNP [dm3] 3R_7318684_SNP [dm6]	G	A	4.974e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	17774986	2R_17774986_SNP [dm3] 2R_21887481_SNP [dm6]	A	G	4.975e^-4	0.996	INTRON Fili
2L	3655732	2L_3655732_SNP [dm3] 2L_3655732_SNP [dm6]	A	C	4.979e^-4	0.996	INTRON for	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	17328947	3R_17328947_SNP [dm3] 3R_21503225_SNP [dm6]	C	T	4.982e^-4	0.996	INTRON C15	TF binding site BDTNP1_TFBS_da
2L	3774251	2L_3774251_SNP [dm3] 2L_3774251_SNP [dm6]	C	T	4.985e^-4	0.996	INTRON bowl	TF binding site mE1_TFBS_HSA
2L	3774254	2L_3774254_SNP [dm3] 2L_3774254_SNP [dm6]	G	T	4.985e^-4	0.996	INTRON bowl	TF binding site mE1_TFBS_HSA
3L	10195681	3L_10195681_SNP [dm3] 3L_10202581_SNP [dm6]	A	G	4.986e^-4	0.996	UPSTREAM ect INTERGENIC
3L	12465386	3L_12465386_SNP [dm3] 3L_12472286_SNP [dm6]	T	A	4.990e^-4	0.996	INTRON CG10616	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12465387	3L_12465387_SNP [dm3] 3L_12472287_SNP [dm6]	T	C	4.990e^-4	0.996	INTRON CG10616	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12465394	3L_12465394_SNP [dm3] 3L_12472294_SNP [dm6]	C	T	4.990e^-4	0.996	INTRON CG10616	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12465395	3L_12465395_SNP [dm3] 3L_12472295_SNP [dm6]	T	G	4.990e^-4	0.996	INTRON CG10616	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12465410	3L_12465410_SNP [dm3] 3L_12472310_SNP [dm6]	A	C	4.990e^-4	0.996	INTRON CG10616	TF binding site mE1_TFBS_cad
3L	12465448	3L_12465448_SNP [dm3] 3L_12472348_SNP [dm6]	G	A	4.990e^-4	0.996	INTRON CG10616	TF binding site mE1_TFBS_cad
3L	12465463	3L_12465463_SNP [dm3] 3L_12472363_SNP [dm6]	A	C	4.990e^-4	0.996	INTRON CG10616	TF binding site mE1_TFBS_cad
3L	12465482	3L_12465482_SNP [dm3] 3L_12472382_SNP [dm6]	C	G	4.990e^-4	0.996	INTRON CG10616	TF binding site mE1_TFBS_cad
2R	13351564	2R_13351564_SNP [dm3] 2R_17464059_SNP [dm6]	C	T	5.008e^-4	0.996	SYNONYMOUS_CODING CG14478	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	13736074	3L_13736074_SNP [dm3] 3L_13742974_SNP [dm6]	C	T	5.035e^-4	0.996	INTRON bru-3
3L	8361611	3L_8361611_SNP [dm3] 3L_8368511_SNP [dm6]	G	A	5.040e^-4	0.996	INTERGENIC
3L	16582366	3L_16582366_SNP [dm3] 3L_16589266_SNP [dm6]	G	A	5.088e^-4	0.996	SYNONYMOUS_CODING l_3_73Ah DOWNSTREAM tra	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	9577774	2L_9577774_SNP [dm3] 2L_9577774_SNP [dm6]	A	T	5.118e^-4	0.996	DOWNSTREAM CG31709 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	6432443	X_6432443_DEL [dm3] X_6538410_DEL [dm6]	TAT	T	5.127e^-4	0.996	UTR_3_PRIME dx	TF binding site BDTNP1_TFBS_dl
3L	9113299	3L_9113299_SNP [dm3] 3L_9120199_SNP [dm6]	C	T	5.138e^-4	0.996	INTRON bol
3L	9113306	3L_9113306_SNP [dm3] 3L_9120206_SNP [dm6]	C	G	5.138e^-4	0.996	INTRON bol
2R	11470639	2R_11470639_SNP [dm3] 2R_15583134_SNP [dm6]	G	A	5.142e^-4	0.996	INTERGENIC
X	20471675	X_20471675_SNP [dm3] X_20600648_SNP [dm6]	G	T	5.148e^-4	0.996	INTRON RunxA
2L	16460499	2L_16460499_DEL [dm3] 2L_16460499_DEL [dm6]	GG	G	5.153e^-4	0.996	INTERGENIC	regulatory region REDfly_CRMs
2R	4114620	2R_4114620_SNP [dm3] 2R_8227115_SNP [dm6]	C	T	5.154e^-4	0.996	DOWNSTREAM LRP1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	1185701	2L_1185701_INS [dm3] 2L_1185701_INS [dm6]	T	TAATTCACAATT...	5.164e^-4	0.996	UPSTREAM CG5001 DOWNSTREAM Tgt INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3L	10699681	3L_10699681_SNP [dm3] 3L_10706581_SNP [dm6]	A	G	5.173e^-4	0.996	INTERGENIC
3R	26365410	3R_26365410_SNP [dm3] 3R_30539688_SNP [dm6]	A	G	5.185e^-4	0.996	INTRON tmod
X	14711857	X_14711857_DEL [dm3] X_14817824_DEL [dm6]	TTT	T	5.192e^-4	0.996	INTRON rut
2L	8287922	2L_8287922_SNP [dm3] 2L_8287922_SNP [dm6]	A	T	5.195e^-4	0.996	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13083945	3L_13083945_SNP [dm3] 3L_13090845_SNP [dm6]	T	A	5.197e^-4	0.996	UPSTREAM CG11251 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	27466914	3R_27466914_SNP [dm3] 3R_31641192_SNP [dm6]	T	C	5.197e^-4	0.996	INTRON kek6
3R	24404555	3R_24404555_SNP [dm3] 3R_28578833_SNP [dm6]	C	A	5.223e^-4	0.996	INTERGENIC	regulatory region REDfly_CRMs
3L	9751873	3L_9751873_SNP [dm3] 3L_9758773_SNP [dm6]	C	T	5.226e^-4	0.996	INTRON CG42268
2L	15084002	2L_15084002_SNP [dm3] 2L_15084002_SNP [dm6]	A	G	5.229e^-4	0.996	INTRON CG15270
2R	16984897	2R_16984897_SNP [dm3] 2R_21097392_SNP [dm6]	C	T	5.237e^-4	0.996	UPSTREAM CG34396 & 1 other INTRON CG34396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11197346	3L_11197346_SNP [dm3] 3L_11204246_SNP [dm6]	C	T	5.237e^-4	0.996	INTRON Plod
2L	7995744	2L_7995744_SNP [dm3] 2L_7995744_SNP [dm6]	T	C	5.238e^-4	0.996	INTRON CG7227 EXON CR44996	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	7995745	2L_7995745_SNP [dm3] 2L_7995745_SNP [dm6]	C	G	5.238e^-4	0.996	INTRON CG7227 EXON CR44996	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8695893	2L_8695893_SNP [dm3] 2L_8695893_SNP [dm6]	T	C	5.251e^-4	0.996	INTRON Hnf4
2R	10715671	2R_10715671_SNP [dm3] 2R_14828166_SNP [dm6]	C	G	5.263e^-4	0.996	INTERGENIC
2R	10715684	2R_10715684_SNP [dm3] 2R_14828179_SNP [dm6]	A	G	5.263e^-4	0.996	INTERGENIC
2L	16822769	2L_16822769_SNP [dm3] 2L_16822769_SNP [dm6]	C	G	5.264e^-4	0.996	SYNONYMOUS_CODING Cas INTRON mdy
2L	14449693	2L_14449693_SNP [dm3] 2L_14449693_SNP [dm6]	A	C	5.273e^-4	0.996	UPSTREAM CR45726 DOWNSTREAM CG15283 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	4759724	X_4759724_SNP [dm3] X_4865691_SNP [dm6]	G	A	5.292e^-4	0.996	INTRON CG42594
2R	15140776	2R_15140776_SNP [dm3] 2R_19253271_SNP [dm6]	G	C	5.299e^-4	0.996	UPSTREAM CG33453 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17719461	2R_17719461_SNP [dm3] 2R_21831956_SNP [dm6]	G	A	5.300e^-4	0.996	UPSTREAM CG13492 DOWNSTREAM CG34040 INTERGENIC
2L	5125631	2L_5125631_SNP [dm3] 2L_5125631_SNP [dm6]	G	A	5.319e^-4	0.996	INTRON Msp300	TF binding site mE1_TFBS_cad
3L	12465369	3L_12465369_SNP [dm3] 3L_12472269_SNP [dm6]	T	C	5.321e^-4	0.996	INTRON CG10616	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	2888388	X_2888388_SNP [dm3] X_2994355_SNP [dm6]	T	C	5.325e^-4	0.996	INTRON kirre	TF binding site mE1_TFBS_HSA
X	2888410	X_2888410_SNP [dm3] X_2994377_SNP [dm6]	G	A	5.325e^-4	0.996	INTRON kirre	TF binding site mE1_TFBS_HSA
2R	11886613	2R_11886613_SNP [dm3] 2R_15999108_SNP [dm6]	T	C	5.329e^-4	0.996	INTRON ATPCL
3R	18890195	3R_18890195_SNP [dm3] 3R_23064473_SNP [dm6]	G	A	5.334e^-4	0.996	INTRON CG17111	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	12120235	3R_12120235_SNP [dm3] 3R_16294513_SNP [dm6]	T	G	5.335e^-4	0.996	INTRON gish
2R	2895512	2R_2895512_SNP [dm3] 2R_7008007_SNP [dm6]	T	C	5.340e^-4	0.996	SYNONYMOUS_CODING Tsp42Ec	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	4614289	2R_4614289_DEL [dm3] 2R_8726784_DEL [dm6]	CTTAATTA	C	5.352e^-4	0.996	INTRON gcl
3R	27211564	3R_27211564_SNP [dm3] 3R_31385842_SNP [dm6]	G	T	5.356e^-4	0.996	INTRON CG1607
2L	18631565	2L_18631565_SNP [dm3] 2L_18631565_SNP [dm6]	A	C	5.358e^-4	0.996	INTRON MESR3
2R	16003031	2R_16003031_SNP [dm3] 2R_20115526_SNP [dm6]	A	T	5.362e^-4	0.996	SYNONYMOUS_CODING 18w	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8182689	3R_8182689_SNP [dm3] 3R_12356967_SNP [dm6]	A	T	5.363e^-4	0.996	UPSTREAM MBD-R2 INTERGENIC	TF binding site mE1_TFBS_cad
2L	9146914	2L_9146914_SNP [dm3] 2L_9146914_SNP [dm6]	G	A	5.371e^-4	0.996	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	4614301	2R_4614301_SNP [dm3] 2R_8726796_SNP [dm6]	A	C	5.372e^-4	0.996	INTRON gcl
2R	8385577	2R_8385577_SNP [dm3] 2R_12498072_SNP [dm6]	A	G	5.380e^-4	0.996	INTRON fdl & 1 other	TF binding site mE1_TFBS_inv
3L	3523122	3L_3523122_SNP [dm3] 3L_3523122_SNP [dm6]	G	T	5.398e^-4	0.996	INTRON Eip63E EXON CR45043
3L	16690078	3L_16690078_SNP [dm3] 3L_16696978_SNP [dm6]	A	T	5.400e^-4	0.996	INTRON CR45179 & 2 others
3L	9023017	3L_9023017_SNP [dm3] 3L_9029917_SNP [dm6]	G	C	5.411e^-4	0.996	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	11625089	2R_11625089_SNP [dm3] 2R_15737584_SNP [dm6]	T	G	5.437e^-4	0.996	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8215430	3L_8215430_SNP [dm3] 3L_8222330_SNP [dm6]	C	G	5.448e^-4	0.996	INTRON CG13678
3L	16248509	3L_16248509_SNP [dm3] 3L_16255409_SNP [dm6]	C	A	5.483e^-4	0.996	DOWNSTREAM CG13054 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17951437	2R_17951437_SNP [dm3] 2R_22063932_SNP [dm6]	C	T	5.490e^-4	0.996	INTRON Snp
3R	21995886	3R_21995886_SNP [dm3] 3R_26170164_SNP [dm6]	C	T	5.492e^-4	0.996	UPSTREAM CG31323 INTERGENIC
3L	9113339	3L_9113339_SNP [dm3] 3L_9120239_SNP [dm6]	C	T	5.495e^-4	0.996	INTRON bol
3L	9113341	3L_9113341_SNP [dm3] 3L_9120241_SNP [dm6]	A	C	5.495e^-4	0.996	INTRON bol
3L	9113360	3L_9113360_SNP [dm3] 3L_9120260_SNP [dm6]	A	T	5.495e^-4	0.996	INTRON bol
3L	9113362	3L_9113362_SNP [dm3] 3L_9120262_SNP [dm6]	C	T	5.495e^-4	0.996	INTRON bol
2R	18563638	2R_18563638_SNP [dm3] 2R_22676133_SNP [dm6]	G	T	5.500e^-4	0.996	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11715678	3L_11715678_SNP [dm3] 3L_11722578_SNP [dm6]	T	C	5.505e^-4	0.996	INTRON Bmcp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18304717	3L_18304717_SNP [dm3] 3L_18311617_SNP [dm6]	G	A	5.529e^-4	0.996	INTERGENIC
3L	18304720	3L_18304720_SNP [dm3] 3L_18311620_SNP [dm6]	C	T	5.529e^-4	0.996	INTERGENIC
X	18842984	X_18842984_SNP [dm3] X_18948951_SNP [dm6]	C	T	5.557e^-4	0.996	INTRON CG43759	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	15035206	2L_15035206_SNP [dm3] 2L_15035206_SNP [dm6]	G	T	5.559e^-4	0.996	UPSTREAM yellow-c DOWNSTREAM GABA-B-R1 INTERGENIC
2R	5904331	2R_5904331_SNP [dm3] 2R_10016826_SNP [dm6]	G	A	5.571e^-4	0.996	INTRON Pka-R2
X	6758820	X_6758820_DEL [dm3] X_6864787_DEL [dm6]	TGAGTTTTAACTG...	T	5.573e^-4	0.996	INTRON CG14434 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	18222029	3L_18222029_SNP [dm3] 3L_18228929_SNP [dm6]	G	A	5.579e^-4	0.996	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8418402	3R_8418402_SNP [dm3] 3R_12592680_SNP [dm6]	G	A	5.602e^-4	0.996	INTRON Octbeta2R
3R	8418546	3R_8418546_SNP [dm3] 3R_12592824_SNP [dm6]	G	A	5.602e^-4	0.996	INTRON Octbeta2R
2L	16821864	2L_16821864_SNP [dm3] 2L_16821864_SNP [dm6]	G	A	5.605e^-4	0.996	SYNONYMOUS_CODING Cas UPSTREAM CG13280 INTRON mdy
2L	6984425	2L_6984425_SNP [dm3] 2L_6984425_SNP [dm6]	G	A	5.614e^-4	0.996	SYNONYMOUS_CODING uif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14381619	3L_14381619_SNP [dm3] 3L_14388519_SNP [dm6]	A	C	5.617e^-4	0.996	INTERGENIC
3L	9606361	3L_9606361_SNP [dm3] 3L_9613261_SNP [dm6]	C	T	5.620e^-4	0.996	SYNONYMOUS_CODING CG3280	TF binding site mE1_TFBS_chinmo
3L	9606733	3L_9606733_SNP [dm3] 3L_9613633_SNP [dm6]	C	T	5.620e^-4	0.996	SYNONYMOUS_CODING CG3280	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5561503	2L_5561503_SNP [dm3] 2L_5561503_SNP [dm6]	G	A	5.643e^-4	0.996	SYNONYMOUS_CODING GluRIIB
3L	9676016	3L_9676016_SNP [dm3] 3L_9682916_SNP [dm6]	A	G	5.654e^-4	0.996	SYNONYMOUS_CODING alphaTub67C DOWNSTREAM CG6767	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18466597	3L_18466597_SNP [dm3] 3L_18473497_SNP [dm6]	T	C	5.665e^-4	0.996	INTERGENIC
2L	7131751	2L_7131751_SNP [dm3] 2L_7131751_SNP [dm6]	T	A	5.669e^-4	0.996	INTRON Pvf3
3R	27524300	3R_27524300_SNP [dm3] 3R_31698578_SNP [dm6]	G	A	5.721e^-4	0.996	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	16424009	3L_16424009_SNP [dm3] 3L_16430909_SNP [dm6]	T	C	5.721e^-4	0.996	INTRON CG33158 & 1 other
3L	10212704	3L_10212704_SNP [dm3] 3L_10219604_SNP [dm6]	A	G	5.736e^-4	0.996	SYNONYMOUS_CODING CG32055 DOWNSTREAM scramb1
2L	2964410	2L_2964410_SNP [dm3] 2L_2964410_SNP [dm6]	T	C	5.739e^-4	0.996	UTR_3_PRIME Rbp9	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	15015138	2R_15015138_SNP [dm3] 2R_19127633_SNP [dm6]	C	T	5.740e^-4	0.996	UPSTREAM CG15117 INTRON CG15117
2R	14186924	2R_14186924_DEL [dm3] 2R_18299419_DEL [dm6]	AAGAA	A	5.743e^-4	0.996	DOWNSTREAM CG18539 INTRON sbb & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	20707600	X_20707600_SNP [dm3] X_20836573_SNP [dm6]	T	A	5.746e^-4	0.996	INTRON shakB
2L	15328923	2L_15328923_SNP [dm3] 2L_15328923_SNP [dm6]	A	T	5.756e^-4	0.996	INTERGENIC
3L	13302289	3L_13302289_SNP [dm3] 3L_13309189_SNP [dm6]	T	C	5.757e^-4	0.996	INTERGENIC
2L	5806338	2L_5806338_SNP [dm3] 2L_5806338_SNP [dm6]	C	A	5.761e^-4	0.996	INTRON CG11034
3R	8418590	3R_8418590_SNP [dm3] 3R_12592868_SNP [dm6]	C	A	5.771e^-4	0.996	INTRON Octbeta2R
3R	26372780	3R_26372780_SNP [dm3] 3R_30547058_SNP [dm6]	A	T	5.772e^-4	0.996	UTR_5_PRIME tmod INTRON tmod
3L	11445858	3L_11445858_SNP [dm3] 3L_11452758_SNP [dm6]	G	A	5.787e^-4	0.996	INTERGENIC
2R	17250126	2R_17250126_SNP [dm3] 2R_21362621_SNP [dm6]	C	A	5.796e^-4	0.996	INTRON cv-2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
3L	8420329	3L_8420329_SNP [dm3] 3L_8427229_SNP [dm6]	G	A	5.812e^-4	0.996	INTRON Cbl
2R	16961132	2R_16961132_SNP [dm3] 2R_21073627_SNP [dm6]	C	A	5.822e^-4	0.996	UPSTREAM CG10527 & 1 other INTERGENIC
2R	12759415	2R_12759415_SNP [dm3] 2R_16871910_SNP [dm6]	G	A	5.848e^-4	0.996	UPSTREAM CG6421 DOWNSTREAM CG6426 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	13719605	2L_13719605_SNP [dm3] 2L_13719605_SNP [dm6]	T	A	5.849e^-4	0.996	INTERGENIC
3L	17240418	3L_17240418_SNP [dm3] 3L_17247318_SNP [dm6]	G	C	5.857e^-4	0.996	INTRON CR43870	transposable element FlyBase
2L	16822883	2L_16822883_SNP [dm3] 2L_16822883_SNP [dm6]	A	G	5.878e^-4	0.996	SYNONYMOUS_CODING Cas INTRON mdy
2L	10127657	2L_10127657_SNP [dm3] 2L_10127657_SNP [dm6]	T	C	5.878e^-4	0.996	INTRON CG44153
X	11769450	X_11769450_SNP [dm3] X_11875417_SNP [dm6]	A	T	5.881e^-4	0.996	UTR_3_PRIME CG10352 DOWNSTREAM CG15739
X	11769455	X_11769455_SNP [dm3] X_11875422_SNP [dm6]	T	A	5.881e^-4	0.996	UTR_3_PRIME CG10352 DOWNSTREAM CG15739
X	11769501	X_11769501_SNP [dm3] X_11875468_SNP [dm6]	A	G	5.881e^-4	0.996	UTR_3_PRIME CG10352 DOWNSTREAM CG15739
X	14711862	X_14711862_SNP [dm3] X_14817829_SNP [dm6]	G	T	5.882e^-4	0.996	INTRON rut
X	21850002	X_21850002_SNP [dm3] X_22448166_SNP [dm6]	G	T	5.892e^-4	0.996	DOWNSTREAM CG14621 INTRON CG14615
2L	15795162	2L_15795162_SNP [dm3] 2L_15795162_SNP [dm6]	G	T	5.896e^-4	0.996	INTERGENIC
3R	26602314	3R_26602314_DEL [dm3] 3R_30776592_DEL [dm6]	TT	T	5.908e^-4	0.996	INTRON zfh1
X	4839651	X_4839651_SNP [dm3] X_4945618_SNP [dm6]	C	T	5.937e^-4	0.996	INTRON Ptp4E	TF binding site BDTNP1_TFBS_dl
2L	5754628	2L_5754628_SNP [dm3] 2L_5754628_SNP [dm6]	T	C	5.941e^-4	0.996	INTRON CG11030
2L	2079327	2L_2079327_SNP [dm3] 2L_2079327_SNP [dm6]	G	A	5.945e^-4	0.996	UPSTREAM CG12674 INTRON dpr3
3R	9815091	3R_9815091_SNP [dm3] 3R_13989369_SNP [dm6]	A	C	5.948e^-4	0.996	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	27247026	3R_27247026_SNP [dm3] 3R_31421304_SNP [dm6]	C	T	5.958e^-4	0.996	INTRON Gprk2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7124815	2R_7124815_SNP [dm3] 2R_11237310_SNP [dm6]	G	T	5.960e^-4	0.996	SYNONYMOUS_CODING CG34224 UPSTREAM CG13217 DOWNSTREAM CG13216	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3990486	2L_3990486_SNP [dm3] 2L_3990486_SNP [dm6]	T	G	5.979e^-4	0.996	INTRON fred	TF binding site mE1_TFBS_cad
3L	12465487	3L_12465487_SNP [dm3] 3L_12472387_SNP [dm6]	C	G	5.981e^-4	0.996	INTRON CG10616	TF binding site mE1_TFBS_cad
3L	12465505	3L_12465505_SNP [dm3] 3L_12472405_SNP [dm6]	G	A	5.981e^-4	0.996	INTRON CG10616	TF binding site mE1_TFBS_cad
3L	12465583	3L_12465583_SNP [dm3] 3L_12472483_SNP [dm6]	A	C	5.981e^-4	0.996	INTRON CG10616
3L	12465816	3L_12465816_SNP [dm3] 3L_12472716_SNP [dm6]	G	A	5.981e^-4	0.996	SYNONYMOUS_CODING CG10616
2R	19087167	2R_19087167_DEL [dm3] 2R_23199644_DEL [dm6]	TCTGTGAGCCAAATAT...	T	5.981e^-4	0.996	INTRON CG34371
3L	3497851	3L_3497851_SNP [dm3] 3L_3497851_SNP [dm6]	C	T	5.983e^-4	0.996	INTRON CG42324
2L	8696085	2L_8696085_SNP [dm3] 2L_8696085_SNP [dm6]	G	T	5.984e^-4	0.996	INTRON Hnf4
3R	22846568	3R_22846568_SNP [dm3] 3R_27020846_SNP [dm6]	A	G	6.005e^-4	0.996	SYNONYMOUS_CODING CG6283 INTRON RYa-R	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	14659706	3L_14659706_SNP [dm3] 3L_14666606_SNP [dm6]	T	C	6.011e^-4	0.996	INTRON dlp	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	14624379	X_14624379_SNP [dm3] X_14730346_SNP [dm6]	T	C	6.026e^-4	0.996	INTRON NetB
2L	16132607	2L_16132607_SNP [dm3] 2L_16132607_SNP [dm6]	T	A	6.034e^-4	0.996	UPSTREAM CG4892 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16991754	3R_16991754_SNP [dm3] 3R_21166032_SNP [dm6]	T	A	6.040e^-4	0.996	DOWNSTREAM CG5810 INTRON SNF4Agamma & 1 other
2L	5754075	2L_5754075_SNP [dm3] 2L_5754075_SNP [dm6]	A	T	6.042e^-4	0.996	INTRON CG11030
3R	15399024	3R_15399024_SNP [dm3] 3R_19573302_SNP [dm6]	A	G	6.045e^-4	0.996	INTRON Dys
3R	16808771	3R_16808771_SNP [dm3] 3R_20983049_SNP [dm6]	T	A	6.055e^-4	0.996	INTRON Calx
2L	15084821	2L_15084821_SNP [dm3] 2L_15084821_SNP [dm6]	A	C	6.060e^-4	0.996	INTRON CG15270
3L	14381745	3L_14381745_SNP [dm3] 3L_14388645_SNP [dm6]	G	A	6.077e^-4	0.996	INTERGENIC
3L	14381746	3L_14381746_SNP [dm3] 3L_14388646_SNP [dm6]	T	A	6.077e^-4	0.996	INTERGENIC
3L	10860824	3L_10860824_SNP [dm3] 3L_10867724_SNP [dm6]	C	G	6.088e^-4	0.996	INTRON tna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18432789	2L_18432789_SNP [dm3] 2L_18432789_SNP [dm6]	A	G	6.092e^-4	0.996	UPSTREAM CR44488 INTERGENIC
3L	12465367	3L_12465367_SNP [dm3] 3L_12472267_SNP [dm6]	C	G	6.094e^-4	0.996	INTRON CG10616	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16337862	2L_16337862_SNP [dm3] 2L_16337862_SNP [dm6]	G	A	6.095e^-4	0.996	UTR_5_PRIME CG31817 DOWNSTREAM CG42266
2R	8438117	2R_8438117_SNP [dm3] 2R_12550612_SNP [dm6]	C	T	6.100e^-4	0.996	INTRON fra	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	8354409	X_8354409_INS [dm3] X_8460376_INS [dm6]	A	AAGGAA	6.100e^-4	0.996	INTRON CG15347	transposable element FlyBase
X	16965572	X_16965572_SNP [dm3] X_17071539_SNP [dm6]	C	A	6.103e^-4	0.996	SYNONYMOUS_CODING CG8949	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1605529	3L_1605529_SNP [dm3] 3L_1605529_SNP [dm6]	C	T	6.109e^-4	0.996	SPLICE_SITE_REGION CG33791 & 1 other INTRON CG33791 & 1 other
3L	1819986	3L_1819986_SNP [dm3] 3L_1819986_SNP [dm6]	C	T	6.118e^-4	0.996	INTRON GV1
3R	10892543	3R_10892543_SNP [dm3] 3R_15066821_SNP [dm6]	G	A	6.120e^-4	0.996	SYNONYMOUS_CODING dpr9
3L	759450	3L_759450_SNP [dm3] 3L_759450_SNP [dm6]	G	A	6.129e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	5164190	2R_5164190_DEL [dm3] 2R_9276685_DEL [dm6]	AACA	A	6.137e^-4	0.996	INTRON Pkn
3L	9604042	3L_9604042_SNP [dm3] 3L_9610942_SNP [dm6]	C	A	6.138e^-4	0.996	INTRON CG3280
3L	10860662	3L_10860662_SNP [dm3] 3L_10867562_SNP [dm6]	A	T	6.140e^-4	0.996	INTRON tna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	1056535	3L_1056535_SNP [dm3] 3L_1056535_SNP [dm6]	C	A	6.163e^-4	0.996	INTRON bab1
3R	18461891	3R_18461891_SNP [dm3] 3R_22636169_SNP [dm6]	T	G	6.168e^-4	0.996	UTR_5_PRIME loco INTRON loco	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	23675343	3R_23675343_SNP [dm3] 3R_27849621_SNP [dm6]	T	A	6.170e^-4	0.996	INTRON CG34353
3L	3273007	3L_3273007_MNP [dm3] 3L_3273007_MNP [dm6]	GGC	ATT	6.172e^-4	0.996	INTRON CG14960
3L	3273011	3L_3273011_DEL [dm3] 3L_3273011_DEL [dm6]	TCACAAAGGGCCA...	T	6.172e^-4	0.996	INTRON CG14960
3L	3273030	3L_3273030_DEL [dm3] 3L_3273030_DEL [dm6]	GCA	T	6.172e^-4	0.996	INTRON CG14960
2L	3174577	2L_3174577_SNP [dm3] 2L_3174577_SNP [dm6]	G	T	6.179e^-4	0.996	UPSTREAM CG31698 DOWNSTREAM CG34393 & 1 other INTERGENIC
2L	7559438	2L_7559438_INS [dm3] 2L_7559438_INS [dm6]	T	TGCACAT	6.188e^-4	0.996	INTRON RapGAP1
X	6517434	X_6517434_SNP [dm3] X_6623401_SNP [dm6]	G	C	6.191e^-4	0.996	INTRON pigs	TF binding site mE1_TFBS_HSA
3L	10469641	3L_10469641_SNP [dm3] 3L_10476541_SNP [dm6]	A	G	6.198e^-4	0.996	INTERGENIC
3L	7002785	3L_7002785_SNP [dm3] 3L_7009685_SNP [dm6]	G	A	6.202e^-4	0.996	INTRON Mp
3L	18222555	3L_18222555_SNP [dm3] 3L_18229455_SNP [dm6]	T	C	6.210e^-4	0.996	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3L	3846306	3L_3846306_SNP [dm3] 3L_3846306_SNP [dm6]	C	G	6.221e^-4	0.996	START_GAINED Awh UTR_5_PRIME Awh	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2L	7986343	2L_7986343_SNP [dm3] 2L_7986343_SNP [dm6]	G	A	6.221e^-4	0.996	NON_SYNONYMOUS_CODING CG7231 DOWNSTREAM pes
2L	7986345	2L_7986345_SNP [dm3] 2L_7986345_SNP [dm6]	A	C	6.221e^-4	0.996	NON_SYNONYMOUS_CODING CG7231 DOWNSTREAM pes
2R	13493953	2R_13493953_SNP [dm3] 2R_17606448_SNP [dm6]	G	C	6.222e^-4	0.996	SYNONYMOUS_CODING CG10936
3L	770362	3L_770362_SNP [dm3] 3L_770362_SNP [dm6]	T	C	6.226e^-4	0.996	UPSTREAM tRNA:CR32481 DOWNSTREAM tRNA:CR32480 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20825408	2L_20825408_SNP [dm3] 2L_20825408_SNP [dm6]	A	T	6.245e^-4	0.996	UTR_5_PRIME CG9331 UPSTREAM CG9331 INTRON CG9331	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	16471517	3L_16471517_SNP [dm3] 3L_16478417_SNP [dm6]	G	T	6.253e^-4	0.996	INTRON CG33158 & 1 other	TF binding site mE1_TFBS_HSA
3L	16471518	3L_16471518_SNP [dm3] 3L_16478418_SNP [dm6]	G	T	6.253e^-4	0.996	INTRON CG33158 & 1 other	TF binding site mE1_TFBS_HSA
3R	27211436	3R_27211436_SNP [dm3] 3R_31385714_SNP [dm6]	C	A	6.255e^-4	0.996	INTRON CG1607
2R	14681523	2R_14681523_SNP [dm3] 2R_18794018_SNP [dm6]	G	A	6.283e^-4	0.996	SYNONYMOUS_CODING CG15080 DOWNSTREAM MFS15	TF binding site mE1_TFBS_chinmo
3L	9037359	3L_9037359_SNP [dm3] 3L_9044259_SNP [dm6]	T	C	6.292e^-4	0.996	INTRON Doc1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13080570	3L_13080570_INS [dm3] 3L_13087470_INS [dm6]	A	AA	6.296e^-4	0.996	UPSTREAM CR45749 & 1 other INTERGENIC
3L	13080439	3L_13080439_SNP [dm3] 3L_13087339_SNP [dm6]	C	T	6.300e^-4	0.996	UPSTREAM CR45749 & 1 other INTERGENIC
3L	13080440	3L_13080440_SNP [dm3] 3L_13087340_SNP [dm6]	A	G	6.300e^-4	0.996	UPSTREAM CR45749 & 1 other INTERGENIC
3L	10886890	3L_10886890_SNP [dm3] 3L_10893790_SNP [dm6]	A	C	6.301e^-4	0.996	UPSTREAM Cpr67Fb DOWNSTREAM Aps EXON CR45171
2R	16984914	2R_16984914_SNP [dm3] 2R_21097409_SNP [dm6]	G	T	6.302e^-4	0.996	UPSTREAM CG34396 & 1 other INTRON CG34396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3871536	2L_3871536_SNP [dm3] 2L_3871536_SNP [dm6]	G	A	6.321e^-4	0.996	UTR_3_PRIME CG31957 DOWNSTREAM Cep97	TF binding site mE1_TFBS_sens
2L	17117891	2L_17117891_SNP [dm3] 2L_17117891_SNP [dm6]	G	C	6.336e^-4	0.996	INTERGENIC
2L	17117895	2L_17117895_SNP [dm3] 2L_17117895_SNP [dm6]	T	C	6.336e^-4	0.996	INTERGENIC
2L	17117905	2L_17117905_SNP [dm3] 2L_17117905_SNP [dm6]	A	G	6.336e^-4	0.996	INTERGENIC
2L	17117913	2L_17117913_SNP [dm3] 2L_17117913_SNP [dm6]	G	A	6.336e^-4	0.996	INTERGENIC
3R	25361696	3R_25361696_SNP [dm3] 3R_29535974_SNP [dm6]	A	G	6.341e^-4	0.996	DOWNSTREAM CR43613 INTERGENIC
3R	19371964	3R_19371964_SNP [dm3] 3R_23546242_SNP [dm6]	A	T	6.343e^-4	0.996	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	13832291	3R_13832291_SNP [dm3] 3R_18006569_SNP [dm6]	G	A	6.347e^-4	0.996	INTRON cpo
2L	22099807	2L_22099807_SNP [dm3] 2L_22099807_SNP [dm6]	T	C	6.354e^-4	0.996	INTERGENIC
2L	22099816	2L_22099816_SNP [dm3] 2L_22099816_SNP [dm6]	C	A	6.354e^-4	0.996	INTERGENIC
2L	22099817	2L_22099817_SNP [dm3] 2L_22099817_SNP [dm6]	A	T	6.354e^-4	0.996	INTERGENIC
X	14249195	X_14249195_SNP [dm3] X_14355162_SNP [dm6]	C	T	6.419e^-4	0.996	INTRON dpr8
2R	11330454	2R_11330454_SNP [dm3] 2R_15442949_SNP [dm6]	G	A	6.430e^-4	0.996	INTRON CG43729
2L	7558692	2L_7558692_SNP [dm3] 2L_7558692_SNP [dm6]	A	C	6.431e^-4	0.996	INTRON RapGAP1
3L	7093417	3L_7093417_SNP [dm3] 3L_7100317_SNP [dm6]	G	A	6.432e^-4	0.996	INTRON form3
3R	23676003	3R_23676003_SNP [dm3] 3R_27850281_SNP [dm6]	T	C	6.438e^-4	0.996	INTRON CG34353
3R	23676007	3R_23676007_SNP [dm3] 3R_27850285_SNP [dm6]	T	C	6.438e^-4	0.996	INTRON CG34353
3R	23676008	3R_23676008_DEL [dm3] 3R_27850286_DEL [dm6]	TTTTTCATAA	T	6.438e^-4	0.996	INTRON CG34353
X	17477382	X_17477382_SNP [dm3] X_17583349_SNP [dm6]	G	A	6.459e^-4	0.996	INTRON CG12991
X	17477422	X_17477422_SNP [dm3] X_17583389_SNP [dm6]	T	C	6.459e^-4	0.996	INTRON CG12991
2L	3658784	2L_3658784_SNP [dm3] 2L_3658784_SNP [dm6]	A	T	6.465e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3658801	2L_3658801_SNP [dm3] 2L_3658801_SNP [dm6]	A	G	6.465e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3658806	2L_3658806_SNP [dm3] 2L_3658806_SNP [dm6]	A	T	6.465e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3658823	2L_3658823_SNP [dm3] 2L_3658823_SNP [dm6]	T	G	6.465e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3658829	2L_3658829_SNP [dm3] 2L_3658829_SNP [dm6]	C	T	6.465e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9085230	3L_9085230_SNP [dm3] 3L_9092130_SNP [dm6]	T	C	6.478e^-4	0.996	UTR_3_PRIME Tequila UPSTREAM CG32032
3L	9085232	3L_9085232_SNP [dm3] 3L_9092132_SNP [dm6]	C	A	6.478e^-4	0.996	UPSTREAM CG32032 DOWNSTREAM Tequila INTERGENIC
2L	8040185	2L_8040185_SNP [dm3] 2L_8040185_SNP [dm6]	G	A	6.480e^-4	0.996	UTR_3_PRIME Cka UPSTREAM CG7367 & 1 other
2L	5558559	2L_5558559_SNP [dm3] 2L_5558559_SNP [dm6]	G	A	6.506e^-4	0.996	SYNONYMOUS_CODING GluRIIA UPSTREAM GluRIIB
2L	5559990	2L_5559990_SNP [dm3] 2L_5559990_SNP [dm6]	C	T	6.506e^-4	0.996	DOWNSTREAM GluRIIA INTRON GluRIIB
2L	5560191	2L_5560191_SNP [dm3] 2L_5560191_SNP [dm6]	C	A	6.506e^-4	0.996	INTRON GluRIIB
3L	16239289	3L_16239289_DEL [dm3] 3L_16246189_DEL [dm6]	TGT	T	6.532e^-4	0.996	INTERGENIC
3L	387406	3L_387406_SNP [dm3] 3L_387406_SNP [dm6]	T	A	6.537e^-4	0.996	INTRON trh
3L	387409	3L_387409_INS [dm3] 3L_387409_INS [dm6]	T	TT	6.537e^-4	0.996	INTRON trh
3L	387434	3L_387434_SNP [dm3] 3L_387434_SNP [dm6]	A	G	6.537e^-4	0.996	INTRON trh
2R	13353312	2R_13353312_SNP [dm3] 2R_17465807_SNP [dm6]	T	C	6.539e^-4	0.996	DOWNSTREAM Tes & 1 other INTERGENIC
3R	27211445	3R_27211445_SNP [dm3] 3R_31385723_SNP [dm6]	C	T	6.561e^-4	0.996	INTRON CG1607
3L	8521065	3L_8521065_SNP [dm3] 3L_8527965_SNP [dm6]	A	C	6.564e^-4	0.996	UPSTREAM foi INTRON foi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26004964	3R_26004964_SNP [dm3] 3R_30179242_SNP [dm6]	A	G	6.565e^-4	0.996	NON_SYNONYMOUS_CODING CG15530 UPSTREAM Bet5	TF binding site mE1_TFBS_chinmo
3L	14709900	3L_14709900_SNP [dm3] 3L_14716800_SNP [dm6]	T	C	6.580e^-4	0.996	INTRON ome	regulatory region REDfly_CRMs
3L	14709901	3L_14709901_SNP [dm3] 3L_14716801_SNP [dm6]	C	T	6.580e^-4	0.996	INTRON ome	regulatory region REDfly_CRMs
2R	11444738	2R_11444738_INS [dm3] 2R_15557233_INS [dm6]	T	TT	6.583e^-4	0.996	UPSTREAM CG12963 INTRON CG12963
3R	11074533	3R_11074533_SNP [dm3] 3R_15248811_SNP [dm6]	T	G	6.597e^-4	0.996	SYNONYMOUS_CODING CG6499	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8551016	2R_8551016_SNP [dm3] 2R_12663511_SNP [dm6]	T	G	6.603e^-4	0.996	UPSTREAM nemy INTRON nemy	TF binding site mE1_TFBS_cad
2R	15460241	2R_15460241_SNP [dm3] 2R_19572736_SNP [dm6]	C	A	6.604e^-4	0.996	INTRON sm	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14339951	3R_14339951_DEL [dm3] 3R_18514229_DEL [dm6]	TAT	T	6.608e^-4	0.996	UTR_5_PRIME fru INTRON fru
3R	21096694	3R_21096694_SNP [dm3] 3R_25270972_SNP [dm6]	G	C	6.610e^-4	0.996	NON_SYNONYMOUS_CODING CG11889 UTR_5_PRIME CG11891 UPSTREAM CR45214 & 1 other
3L	22022151	3L_22022151_SNP [dm3] 3L_22029051_SNP [dm6]	A	G	6.618e^-4	0.996	UPSTREAM CG7140 & 1 other DOWNSTREAM CG43392 INTERGENIC
2R	17461048	2R_17461048_SNP [dm3] 2R_21573543_SNP [dm6]	G	A	6.621e^-4	0.996	INTRON CG10440
2L	16821828	2L_16821828_SNP [dm3] 2L_16821828_SNP [dm6]	C	T	6.622e^-4	0.996	SYNONYMOUS_CODING Cas UPSTREAM CG13280 INTRON mdy
3L	12564497	3L_12564497_SNP [dm3] 3L_12571397_SNP [dm6]	T	C	6.629e^-4	0.996	INTRON sowah	TF binding site mE1_TFBS_cad
3R	20241331	3R_20241331_SNP [dm3] 3R_24415609_SNP [dm6]	A	T	6.637e^-4	0.996	INTRON nAChRalpha1
3L	18466598	3L_18466598_SNP [dm3] 3L_18473498_SNP [dm6]	G	A	6.638e^-4	0.996	INTERGENIC
3L	14381508	3L_14381508_SNP [dm3] 3L_14388408_SNP [dm6]	T	A	6.648e^-4	0.996	INTERGENIC
3L	9606685	3L_9606685_SNP [dm3] 3L_9613585_SNP [dm6]	G	A	6.680e^-4	0.996	SYNONYMOUS_CODING CG3280	TF binding site mE1_TFBS_chinmo
2R	1376939	2R_1376939_SNP [dm3] 2R_5489434_SNP [dm6]	G	T	6.682e^-4	0.996	INTRON CG30440	transposable element FlyBase
3L	17902944	3L_17902944_SNP [dm3] 3L_17909844_SNP [dm6]	A	G	6.683e^-4	0.996	NON_SYNONYMOUS_CODING CG5290 DOWNSTREAM CG14353
3R	12904746	3R_12904746_SNP [dm3] 3R_17079024_SNP [dm6]	C	A	6.686e^-4	0.996	UPSTREAM Keap1 INTRON Keap1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_Trl
3L	9839158	3L_9839158_SNP [dm3] 3L_9846058_SNP [dm6]	A	G	6.688e^-4	0.996	INTRON RasGAP1	TF binding site BDTNP1_TFBS_dl
X	6179004	X_6179004_SNP [dm3] X_6284971_SNP [dm6]	T	C	6.692e^-4	0.996	SPLICE_SITE_REGION Top3beta INTRON Top3beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	5878704	3R_5878704_SNP [dm3] 3R_10052982_SNP [dm6]	T	C	6.695e^-4	0.996	UPSTREAM Npc2e & 1 other INTRON CR44192	TF binding site mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3L	18597666	3L_18597666_SNP [dm3] 3L_18604566_SNP [dm6]	A	T	6.744e^-4	0.996	NON_SYNONYMOUS_CODING CG18234 UPSTREAM CG18233 INTRON CG4174 & 1 other
2R	16561850	2R_16561850_SNP [dm3] 2R_20674345_SNP [dm6]	G	A	6.747e^-4	0.996	DOWNSTREAM CG30152 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	17250112	2R_17250112_SNP [dm3] 2R_21362607_SNP [dm6]	A	C	6.752e^-4	0.996	INTRON cv-2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
2R	17250133	2R_17250133_SNP [dm3] 2R_21362628_SNP [dm6]	G	A	6.752e^-4	0.996	INTRON cv-2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
3L	9844491	3L_9844491_SNP [dm3] 3L_9851391_SNP [dm6]	G	C	6.754e^-4	0.996	INTRON RasGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	1362016	2R_1362016_SNP [dm3] 2R_5474511_SNP [dm6]	C	T	6.762e^-4	0.996	INTRON CG30440	transposable element FlyBase
3R	17727737	3R_17727737_SNP [dm3] 3R_21902015_SNP [dm6]	A	G	6.772e^-4	0.996	INTRON CG6678
2L	7831062	2L_7831062_SNP [dm3] 2L_7831062_SNP [dm6]	A	T	6.798e^-4	0.996	INTRON mts	TF binding site mE1_TFBS_cad
2R	10266263	2R_10266263_SNP [dm3] 2R_14378758_SNP [dm6]	C	T	6.808e^-4	0.996	INTRON Dh44-R1
2R	10266265	2R_10266265_SNP [dm3] 2R_14378760_SNP [dm6]	G	T	6.808e^-4	0.996	INTRON Dh44-R1
2R	4519393	2R_4519393_SNP [dm3] 2R_8631888_SNP [dm6]	A	T	6.811e^-4	0.996	UTR_5_PRIME CG8635 UPSTREAM CG8635	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	4519428	2R_4519428_SNP [dm3] 2R_8631923_SNP [dm6]	A	G	6.811e^-4	0.996	UTR_5_PRIME CG8635 UPSTREAM CG8635	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	3756542	2L_3756542_SNP [dm3] 2L_3756542_SNP [dm6]	C	A	6.816e^-4	0.996	UPSTREAM CG43707 INTERGENIC
X	11769401	X_11769401_SNP [dm3] X_11875368_SNP [dm6]	C	G	6.823e^-4	0.996	UTR_3_PRIME CG10352 DOWNSTREAM CG15739
3R	27058896	3R_27058896_SNP [dm3] 3R_31233174_SNP [dm6]	T	A	6.843e^-4	0.996	NON_SYNONYMOUS_CODING CG15564 UPSTREAM CG15563	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18285092	2R_18285092_SNP [dm3] 2R_22397587_SNP [dm6]	A	C	6.864e^-4	0.996	INTRON babos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1381249	3L_1381249_SNP [dm3] 3L_1381249_SNP [dm6]	T	G	6.883e^-4	0.996	DOWNSTREAM tRNA:CR32328 & 1 other INTRON Ptp61F & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19646096	X_19646096_SNP [dm3] X_19752063_SNP [dm6]	G	A	6.885e^-4	0.996	INTRON Pmp70	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	15109462	3R_15109462_SNP [dm3] 3R_19283740_SNP [dm6]	C	G	6.898e^-4	0.996	INTERGENIC
2L	13993074	2L_13993074_SNP [dm3] 2L_13993074_SNP [dm6]	T	C	6.916e^-4	0.996	SYNONYMOUS_CODING rk
3L	16459426	3L_16459426_SNP [dm3] 3L_16466326_SNP [dm6]	G	A	6.918e^-4	0.996	INTRON CG33158	TF binding site mE1_TFBS_cnc
3L	10440645	3L_10440645_SNP [dm3] 3L_10447545_SNP [dm6]	G	C	6.920e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21096698	3R_21096698_DEL [dm3] 3R_25270976_DEL [dm6]	CC	C	6.949e^-4	0.996	FRAME_SHIFT CG11889 UTR_5_PRIME CG11891 UPSTREAM CR45214 & 1 other
2R	10016887	2R_10016887_SNP [dm3] 2R_14129382_SNP [dm6]	T	C	6.965e^-4	0.996	INTRON Prosap
3R	3144400	3R_3144400_SNP [dm3] 3R_7318678_SNP [dm6]	A	G	6.979e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	25959535	3R_25959535_SNP [dm3] 3R_30133813_SNP [dm6]	G	C	6.987e^-4	0.996	SYNONYMOUS_CODING Tpi	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11470641	2R_11470641_SNP [dm3] 2R_15583136_SNP [dm6]	T	A	6.989e^-4	0.996	INTERGENIC
X	9464964	X_9464964_SNP [dm3] X_9570931_SNP [dm6]	T	G	6.990e^-4	0.996	NON_SYNONYMOUS_CODING Cubn DOWNSTREAM CG32699
2L	6555086	2L_6555086_SNP [dm3] 2L_6555086_SNP [dm6]	A	G	6.995e^-4	0.996	DOWNSTREAM Osm6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16052983	3L_16052983_SNP [dm3] 3L_16059883_SNP [dm6]	T	C	7.000e^-4	0.996	INTRON Mbs
X	16848290	X_16848290_SNP [dm3] X_16954257_SNP [dm6]	C	T	7.003e^-4	0.996	INTRON RhoGAP15B
2L	8659278	2L_8659278_SNP [dm3] 2L_8659278_SNP [dm6]	A	C	7.014e^-4	0.996	INTRON Sema-1a
3L	16062644	3L_16062644_SNP [dm3] 3L_16069544_SNP [dm6]	T	C	7.022e^-4	0.996	INTRON Mbs
X	11769412	X_11769412_SNP [dm3] X_11875379_SNP [dm6]	A	G	7.029e^-4	0.996	UTR_3_PRIME CG10352 DOWNSTREAM CG15739
X	11769422	X_11769422_SNP [dm3] X_11875389_SNP [dm6]	G	A	7.029e^-4	0.996	UTR_3_PRIME CG10352 DOWNSTREAM CG15739
3L	769877	3L_769877_SNP [dm3] 3L_769877_SNP [dm6]	T	C	7.029e^-4	0.996	UPSTREAM tRNA:CR32481 DOWNSTREAM tRNA:CR32480 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11747673	3L_11747673_SNP [dm3] 3L_11754573_SNP [dm6]	G	A	7.032e^-4	0.996	INTRON CG6024
3R	25305425	3R_25305425_SNP [dm3] 3R_29479703_SNP [dm6]	G	A	7.036e^-4	0.996	SYNONYMOUS_CODING Ptp99A INTRON Ptp99A	TF binding site mE1_TFBS_cad
2L	16567140	2L_16567140_SNP [dm3] 2L_16567140_SNP [dm6]	A	G	7.041e^-4	0.996	INTRON CG42389
2L	10452314	2L_10452314_SNP [dm3] 2L_10452314_SNP [dm6]	T	G	7.049e^-4	0.996	UTR_5_PRIME ppk10 DOWNSTREAM CG5322
X	21788245	X_21788245_DEL [dm3] X_22386412_DEL [dm6]	TTACGATTCGTGTCTTTGGC...	T	7.050e^-4	0.996	INTERGENIC	transposable element FlyBase
3L	16471496	3L_16471496_SNP [dm3] 3L_16478396_SNP [dm6]	G	C	7.050e^-4	0.996	INTRON CG33158 & 1 other	TF binding site mE1_TFBS_HSA
2L	18131996	2L_18131996_SNP [dm3] 2L_18131996_SNP [dm6]	C	T	7.062e^-4	0.996	SYNONYMOUS_CODING kel UTR_3_PRIME kel	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10005986	2R_10005986_SNP [dm3] 2R_14118481_SNP [dm6]	G	T	7.075e^-4	0.996	INTRON Prosap
3R	23673331	3R_23673331_SNP [dm3] 3R_27847609_SNP [dm6]	A	T	7.076e^-4	0.996	DOWNSTREAM Or98a INTRON CG34353
2R	10712092	2R_10712092_SNP [dm3] 2R_14824587_SNP [dm6]	G	T	7.079e^-4	0.996	UPSTREAM CR45329 INTERGENIC
3R	22581124	3R_22581124_INS [dm3] 3R_26755402_INS [dm6]	A	AAAGCA	7.082e^-4	0.996	INTERGENIC
3R	13062827	3R_13062827_SNP [dm3] 3R_17237105_SNP [dm6]	T	A	7.085e^-4	0.996	INTRON beat-IIb
2L	4189780	2L_4189780_SNP [dm3] 2L_4189780_SNP [dm6]	G	A	7.094e^-4	0.996	UTR_3_PRIME CG3714 DOWNSTREAM lectin-24Db
2L	13337389	2L_13337389_SNP [dm3] 2L_13337389_SNP [dm6]	C	A	7.096e^-4	0.996	INTERGENIC
2L	13337398	2L_13337398_SNP [dm3] 2L_13337398_SNP [dm6]	T	A	7.096e^-4	0.996	INTERGENIC
3L	9392331	3L_9392331_SNP [dm3] 3L_9399231_SNP [dm6]	T	A	7.102e^-4	0.996	UPSTREAM CG4080 DOWNSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	9392454	3L_9392454_SNP [dm3] 3L_9399354_SNP [dm6]	C	A	7.102e^-4	0.996	UPSTREAM CG4080 DOWNSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	9392732	3L_9392732_SNP [dm3] 3L_9399632_SNP [dm6]	G	A	7.102e^-4	0.996	UTR_3_PRIME eIF-4E UPSTREAM CG4080	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	16056748	3R_16056748_SNP [dm3] 3R_20231026_SNP [dm6]	A	G	7.104e^-4	0.996	INTRON Nlg4
X	5288496	X_5288496_SNP [dm3] X_5394463_SNP [dm6]	C	T	7.124e^-4	0.996	INTRON SK
2L	16045326	2L_16045326_SNP [dm3] 2L_16045326_SNP [dm6]	C	T	7.145e^-4	0.996	SYNONYMOUS_CODING BicC UTR_3_PRIME CG45084
3R	14522705	3R_14522705_SNP [dm3] 3R_18696983_SNP [dm6]	A	T	7.158e^-4	0.996	INTERGENIC
2L	7559305	2L_7559305_SNP [dm3] 2L_7559305_SNP [dm6]	T	C	7.175e^-4	0.996	INTRON RapGAP1
2R	1814834	2R_1814834_SNP [dm3] 2R_5927329_SNP [dm6]	C	G	7.191e^-4	0.996	NON_SYNONYMOUS_CODING CG43366	TF binding site mE1_TFBS_cad
3L	12938688	3L_12938688_SNP [dm3] 3L_12945588_SNP [dm6]	T	C	7.192e^-4	0.996	INTERGENIC
3R	23674803	3R_23674803_SNP [dm3] 3R_27849081_SNP [dm6]	G	A	7.201e^-4	0.996	INTRON CG34353
3L	12465748	3L_12465748_SNP [dm3] 3L_12472648_SNP [dm6]	A	G	7.203e^-4	0.996	INTRON CG10616
3L	12465756	3L_12465756_SNP [dm3] 3L_12472656_SNP [dm6]	G	A	7.203e^-4	0.996	INTRON CG10616
2R	15588589	2R_15588589_SNP [dm3] 2R_19701084_SNP [dm6]	A	T	7.209e^-4	0.996	UTR_5_PRIME Obp56c	regulatory region REDfly_CRMs
2R	12759247	2R_12759247_SNP [dm3] 2R_16871742_SNP [dm6]	A	G	7.210e^-4	0.996	SYNONYMOUS_STOP CG6426 UPSTREAM CG6421	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	27469483	3R_27469483_SNP [dm3] 3R_31643761_SNP [dm6]	C	T	7.232e^-4	0.996	INTRON kek6
3L	4658253	3L_4658253_SNP [dm3] 3L_4658253_SNP [dm6]	T	C	7.234e^-4	0.996	INTRON axo
2L	8013295	2L_8013295_SNP [dm3] 2L_8013295_SNP [dm6]	T	C	7.239e^-4	0.996	INTRON Tg
2R	9960678	2R_9960678_SNP [dm3] 2R_14073173_SNP [dm6]	A	T	7.270e^-4	0.996	INTRON Prosap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	9960710	2R_9960710_SNP [dm3] 2R_14073205_SNP [dm6]	A	G	7.270e^-4	0.996	INTRON Prosap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	9601975	X_9601975_DEL [dm3] X_9707942_DEL [dm6]	CC	C	7.285e^-4	0.996	INTERGENIC	TF binding site mE1_TFBS_cnc
3R	11079384	3R_11079384_SNP [dm3] 3R_15253662_SNP [dm6]	A	G	7.303e^-4	0.996	SYNONYMOUS_CODING CG42404 UTR_3_PRIME CG42404	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20808630	X_20808630_SNP [dm3] X_20937603_SNP [dm6]	A	T	7.305e^-4	0.996	NON_SYNONYMOUS_CODING Npc1b	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9312417	3L_9312417_SNP [dm3] 3L_9319317_SNP [dm6]	T	G	7.306e^-4	0.996	INTERGENIC
3L	9312451	3L_9312451_SNP [dm3] 3L_9319351_SNP [dm6]	A	T	7.306e^-4	0.996	INTERGENIC
3L	9313956	3L_9313956_SNP [dm3] 3L_9320856_SNP [dm6]	A	T	7.306e^-4	0.996	INTERGENIC
2L	8559780	2L_8559780_SNP [dm3] 2L_8559780_SNP [dm6]	A	G	7.309e^-4	0.996	INTRON Sema-1a
3L	9149506	3L_9149506_SNP [dm3] 3L_9156406_SNP [dm6]	A	G	7.335e^-4	0.996	INTRON Rdl
3R	24988834	3R_24988834_SNP [dm3] 3R_29163112_SNP [dm6]	G	C	7.336e^-4	0.996	INTRON CG11897
2L	7756622	2L_7756622_SNP [dm3] 2L_7756622_SNP [dm6]	C	A	7.343e^-4	0.996	SYNONYMOUS_CODING CG14538 INTRON CG7196	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	20927737	X_20927737_DEL [dm3] X_21056710_DEL [dm6]	TGCA	C	7.345e^-4	0.996	INTRON bves	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	16522090	3R_16522090_INS [dm3] 3R_20696368_INS [dm6]	G	GAGAGAAAAG	7.347e^-4	0.996	INTRON Oamb
X	17659443	X_17659443_SNP [dm3] X_17765410_SNP [dm6]	T	C	7.360e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4685458	2R_4685458_SNP [dm3] 2R_8797953_SNP [dm6]	A	T	7.365e^-4	0.996	UPSTREAM sns INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2L	8539516	2L_8539516_SNP [dm3] 2L_8539516_SNP [dm6]	C	T	7.371e^-4	0.996	INTRON CG17834
2L	10320056	2L_10320056_DEL [dm3] 2L_10320056_DEL [dm6]	GA	G	7.386e^-4	0.996	SPLICE_SITE_REGION CG5381 INTRON CG5381
2L	16132629	2L_16132629_SNP [dm3] 2L_16132629_SNP [dm6]	T	C	7.395e^-4	0.996	UPSTREAM CG4892 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13787185	3R_13787185_SNP [dm3] 3R_17961463_SNP [dm6]	A	C	7.401e^-4	0.996	INTRON cpo
3R	10977159	3R_10977159_SNP [dm3] 3R_15151437_SNP [dm6]	A	G	7.407e^-4	0.996	UPSTREAM Gyc88E INTRON Gyc88E
3R	25355497	3R_25355497_SNP [dm3] 3R_29529775_SNP [dm6]	A	G	7.408e^-4	0.996	INTERGENIC
2R	6225758	2R_6225758_SNP [dm3] 2R_10338253_SNP [dm6]	A	G	7.411e^-4	0.996	INTRON CG42732
3L	8439863	3L_8439863_SNP [dm3] 3L_8446763_SNP [dm6]	G	A	7.417e^-4	0.996	INTRON CG6983
3L	14381482	3L_14381482_DEL [dm3] 3L_14388382_DEL [dm6]	CAGC	C	7.419e^-4	0.996	INTERGENIC
3R	3149079	3R_3149079_SNP [dm3] 3R_7323357_SNP [dm6]	T	C	7.419e^-4	0.996	INTERGENIC
3L	13981140	3L_13981140_SNP [dm3] 3L_13988040_SNP [dm6]	T	C	7.425e^-4	0.996	SYNONYMOUS_CODING CG9040 DOWNSTREAM CG17362 INTRON CG17364
3L	11207088	3L_11207088_INS [dm3] 3L_11213988_INS [dm6]	T	TT	7.428e^-4	0.996	UTR_3_PRIME CG7600 UPSTREAM CG42671	TF binding site mE1_TFBS_cad
2L	7788118	2L_7788118_SNP [dm3] 2L_7788118_SNP [dm6]	G	A	7.428e^-4	0.996	INTRON CG7149
2R	7934402	2R_7934402_SNP [dm3] 2R_12046897_SNP [dm6]	T	C	7.429e^-4	0.996	INTRON Drep-1
2L	5806706	2L_5806706_SNP [dm3] 2L_5806706_SNP [dm6]	C	T	7.436e^-4	0.996	SYNONYMOUS_CODING CG11034 UTR_3_PRIME CG11034	TF binding site mE1_TFBS_cad
2R	11424377	2R_11424377_SNP [dm3] 2R_15536872_SNP [dm6]	T	C	7.442e^-4	0.996	INTRON CG30471
X	8568791	X_8568791_SNP [dm3] X_8674758_SNP [dm6]	C	T	7.460e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12663959	2R_12663959_SNP [dm3] 2R_16776454_SNP [dm6]	T	C	7.481e^-4	0.996	DOWNSTREAM Arp53D INTERGENIC
3L	18363354	3L_18363354_SNP [dm3] 3L_18370254_SNP [dm6]	T	C	7.485e^-4	0.996	INTERGENIC
3L	9322764	3L_9322764_SNP [dm3] 3L_9329664_SNP [dm6]	T	G	7.485e^-4	0.996	INTERGENIC
2R	2875204	2R_2875204_SNP [dm3] 2R_6987699_SNP [dm6]	C	G	7.493e^-4	0.996	INTRON CG17002	TF binding site mE1_TFBS_cad
2R	6225726	2R_6225726_SNP [dm3] 2R_10338221_SNP [dm6]	T	C	7.500e^-4	0.996	INTRON CG42732
3R	27209840	3R_27209840_SNP [dm3] 3R_31384118_SNP [dm6]	T	A	7.500e^-4	0.996	UPSTREAM CG1607 INTRON CG1607	TF binding site mE1_TFBS_Trl
2L	8329864	2L_8329864_SNP [dm3] 2L_8329864_SNP [dm6]	G	T	7.504e^-4	0.996	INTRON CG14275
2R	6345808	2R_6345808_DEL [dm3] 2R_10458303_DEL [dm6]	TT	T	7.510e^-4	0.996	UPSTREAM Galphao & 1 other INTRON Galphao & 1 other
2L	19881312	2L_19881312_SNP [dm3] 2L_19881312_SNP [dm6]	A	G	7.519e^-4	0.996	INTRON sick
3L	16823373	3L_16823373_SNP [dm3] 3L_16830273_SNP [dm6]	T	C	7.537e^-4	0.996	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	1394597	3L_1394597_SNP [dm3] 3L_1394597_SNP [dm6]	C	G	7.572e^-4	0.996	INTRON Ptp61F
X	19943634	X_19943634_SNP [dm3] X_20049601_SNP [dm6]	T	C	7.637e^-4	0.996	INTRON Dop2R
2R	7465354	2R_7465354_SNP [dm3] 2R_11577849_SNP [dm6]	T	C	7.641e^-4	0.996	UTR_3_PRIME tou
3L	13381400	3L_13381400_SNP [dm3] 3L_13388300_SNP [dm6]	A	C	7.656e^-4	0.996	UTR_3_PRIME Poc1 UPSTREAM CG10171
3L	13381418	3L_13381418_SNP [dm3] 3L_13388318_SNP [dm6]	T	C	7.656e^-4	0.996	UTR_3_PRIME Poc1 UPSTREAM CG10171
2L	7287410	2L_7287410_SNP [dm3] 2L_7287410_SNP [dm6]	A	G	7.676e^-4	0.996	INTERGENIC
2L	3821084	2L_3821084_SNP [dm3] 2L_3821084_SNP [dm6]	G	A	7.690e^-4	0.996	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3L	761565	3L_761565_SNP [dm3] 3L_761565_SNP [dm6]	G	T	7.708e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med
2L	7756619	2L_7756619_SNP [dm3] 2L_7756619_SNP [dm6]	G	A	7.720e^-4	0.996	SYNONYMOUS_CODING CG14538 INTRON CG7196	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15390849	3L_15390849_SNP [dm3] 3L_15397749_SNP [dm6]	G	A	7.723e^-4	0.996	INTERGENIC
3L	15390868	3L_15390868_SNP [dm3] 3L_15397768_SNP [dm6]	A	G	7.723e^-4	0.996	INTERGENIC
2R	1361955	2R_1361955_SNP [dm3] 2R_5474450_SNP [dm6]	A	T	7.726e^-4	0.996	INTRON CG30440	transposable element FlyBase
2R	17439298	2R_17439298_SNP [dm3] 2R_21551793_SNP [dm6]	G	A	7.727e^-4	0.996	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	12445571	3L_12445571_SNP [dm3] 3L_12452471_SNP [dm6]	C	T	7.728e^-4	0.996	INTERGENIC
2R	8550593	2R_8550593_SNP [dm3] 2R_12663088_SNP [dm6]	C	G	7.729e^-4	0.996	UPSTREAM nemy INTRON nemy	TF binding site mE1_TFBS_cad
2L	3174486	2L_3174486_SNP [dm3] 2L_3174486_SNP [dm6]	G	A	7.734e^-4	0.996	UTR_3_PRIME CG15404 UPSTREAM CG31698 DOWNSTREAM CG34393 & 1 other
2L	3174491	2L_3174491_INS [dm3] 2L_3174491_INS [dm6]	A	AA	7.734e^-4	0.996	UTR_3_PRIME CG15404 UPSTREAM CG31698 DOWNSTREAM CG34393 & 1 other
X	12273203	X_12273203_SNP [dm3] X_12379170_SNP [dm6]	T	A	7.751e^-4	0.996	INTERGENIC
2R	16059546	2R_16059546_SNP [dm3] 2R_20172041_SNP [dm6]	G	A	7.760e^-4	0.996	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	17252796	2R_17252796_SNP [dm3] 2R_21365291_SNP [dm6]	A	G	7.776e^-4	0.996	INTRON cv-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad
2R	17968640	2R_17968640_SNP [dm3] 2R_22081135_SNP [dm6]	T	C	7.779e^-4	0.996	UTR_5_PRIME Synj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	17968641	2R_17968641_SNP [dm3] 2R_22081136_SNP [dm6]	T	A	7.779e^-4	0.996	UTR_5_PRIME Synj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	17968652	2R_17968652_SNP [dm3] 2R_22081147_SNP [dm6]	A	G	7.779e^-4	0.996	UTR_5_PRIME Synj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	17968676	2R_17968676_SNP [dm3] 2R_22081171_SNP [dm6]	A	C	7.779e^-4	0.996	UTR_5_PRIME Synj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	16822799	2L_16822799_SNP [dm3] 2L_16822799_SNP [dm6]	T	C	7.786e^-4	0.996	SYNONYMOUS_CODING Cas INTRON mdy
2L	6138924	2L_6138924_SNP [dm3] 2L_6138924_SNP [dm6]	C	T	7.811e^-4	0.996	UPSTREAM CG13991 EXON CR44824
2R	8549608	2R_8549608_SNP [dm3] 2R_12662103_SNP [dm6]	A	G	7.812e^-4	0.996	UPSTREAM nemy INTRON nemy
2R	18035726	2R_18035726_SNP [dm3] 2R_22148221_SNP [dm6]	A	T	7.819e^-4	0.996	INTRON a
3L	2540352	3L_2540352_SNP [dm3] 3L_2540352_SNP [dm6]	A	C	7.855e^-4	0.996	INTRON Spn
3L	12028245	3L_12028245_SNP [dm3] 3L_12035145_SNP [dm6]	A	T	7.858e^-4	0.996	INTRON rols	TF binding site BDTNP1_TFBS_twi
3R	25286126	3R_25286126_SNP [dm3] 3R_29460404_SNP [dm6]	A	G	7.863e^-4	0.996	INTRON Ptp99A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8055465	2L_8055465_SNP [dm3] 2L_8055465_SNP [dm6]	T	G	7.865e^-4	0.996	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8055468	2L_8055468_SNP [dm3] 2L_8055468_SNP [dm6]	C	T	7.865e^-4	0.996	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9392587	3L_9392587_SNP [dm3] 3L_9399487_SNP [dm6]	A	G	7.869e^-4	0.996	UPSTREAM CG4080 DOWNSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	12759422	2R_12759422_SNP [dm3] 2R_16871917_SNP [dm6]	C	G	7.908e^-4	0.996	UPSTREAM CG6421 DOWNSTREAM CG6426 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	12759425	2R_12759425_SNP [dm3] 2R_16871920_SNP [dm6]	A	T	7.908e^-4	0.996	UPSTREAM CG6421 DOWNSTREAM CG6426 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	12759435	2R_12759435_SNP [dm3] 2R_16871930_SNP [dm6]	T	C	7.908e^-4	0.996	UPSTREAM CG6421 DOWNSTREAM CG6426 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	12759497	2R_12759497_SNP [dm3] 2R_16871992_SNP [dm6]	G	A	7.908e^-4	0.996	UPSTREAM CG6421 DOWNSTREAM CG6426 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	12759514	2R_12759514_SNP [dm3] 2R_16872009_SNP [dm6]	C	A	7.908e^-4	0.996	UPSTREAM CG6421 DOWNSTREAM CG6426 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	12759523	2R_12759523_SNP [dm3] 2R_16872018_SNP [dm6]	G	A	7.908e^-4	0.996	UPSTREAM CG6421 & 1 other DOWNSTREAM CG6426 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	9730754	3L_9730754_SNP [dm3] 3L_9737654_SNP [dm6]	A	G	7.912e^-4	0.996	INTRON CG42268
3L	10860478	3L_10860478_SNP [dm3] 3L_10867378_SNP [dm6]	T	C	7.913e^-4	0.996	INTRON tna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12209498	2L_12209498_SNP [dm3] 2L_12209498_SNP [dm6]	G	A	7.922e^-4	0.996	NON_SYNONYMOUS_CODING CG31759 INTRON aret
3R	25321801	3R_25321801_SNP [dm3] 3R_29496079_SNP [dm6]	T	A	7.933e^-4	0.996	UPSTREAM CG2010 INTRON CG2010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_HSA
3R	11593967	3R_11593967_SNP [dm3] 3R_15768245_SNP [dm6]	C	T	7.936e^-4	0.996	UPSTREAM CG5623 INTERGENIC
3R	26602149	3R_26602149_SNP [dm3] 3R_30776427_SNP [dm6]	G	A	7.941e^-4	0.996	INTRON zfh1
3L	16069991	3L_16069991_SNP [dm3] 3L_16076891_SNP [dm6]	C	A	7.943e^-4	0.996	INTRON Mbs
2L	16465950	2L_16465950_SNP [dm3] 2L_16465950_SNP [dm6]	G	A	7.980e^-4	0.996	DOWNSTREAM dac INTERGENIC	regulatory region REDfly_CRMs
X	14624374	X_14624374_SNP [dm3] X_14730341_SNP [dm6]	T	C	7.992e^-4	0.996	INTRON NetB
2R	10127016	2R_10127016_SNP [dm3] 2R_14239511_SNP [dm6]	A	G	8.003e^-4	0.996	UTR_5_PRIME CG8485 UPSTREAM CG8494 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	20439358	X_20439358_SNP [dm3] X_20568331_SNP [dm6]	A	T	8.010e^-4	0.996	INTERGENIC	transposable element FlyBase
3L	1556223	3L_1556223_SNP [dm3] 3L_1556223_SNP [dm6]	G	A	8.026e^-4	0.996	SPLICE_SITE_REGION CG12099 DOWNSTREAM Cct2 INTRON CG12099	TF binding site mE1_TFBS_cad
3L	9313343	3L_9313343_SNP [dm3] 3L_9320243_SNP [dm6]	T	G	8.037e^-4	0.996	INTERGENIC
2R	5282991	2R_5282991_SNP [dm3] 2R_9395486_SNP [dm6]	G	T	8.045e^-4	0.996	SYNONYMOUS_CODING CG8800 DOWNSTREAM CG8801 & 1 other	TF binding site mE1_TFBS_cad
2L	3813830	2L_3813830_SNP [dm3] 2L_3813830_SNP [dm6]	A	C	8.061e^-4	0.996	UPSTREAM CG3407 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11672973	3R_11672973_SNP [dm3] 3R_15847251_SNP [dm6]	A	C	8.062e^-4	0.996	SYNONYMOUS_CODING CG4546 INTRON cv-d	TF binding site mE1_TFBS_cad
2L	20983767	2L_20983767_SNP [dm3] 2L_20983767_SNP [dm6]	G	C	8.063e^-4	0.996	INTRON CG42238
3L	12282638	3L_12282638_SNP [dm3] 3L_12289538_SNP [dm6]	A	T	8.064e^-4	0.996	EXON CR45658
3L	12282646	3L_12282646_SNP [dm3] 3L_12289546_SNP [dm6]	G	T	8.064e^-4	0.996	EXON CR45658
3L	12282655	3L_12282655_SNP [dm3] 3L_12289555_SNP [dm6]	G	T	8.064e^-4	0.996	EXON CR45658
3L	9310331	3L_9310331_SNP [dm3] 3L_9317231_SNP [dm6]	A	C	8.065e^-4	0.996	INTERGENIC
3L	8551868	3L_8551868_SNP [dm3] 3L_8558768_SNP [dm6]	G	C	8.067e^-4	0.996	INTRON rhea
3L	16471465	3L_16471465_SNP [dm3] 3L_16478365_SNP [dm6]	G	C	8.068e^-4	0.996	INTRON CG33158 & 1 other	TF binding site mE1_TFBS_HSA
3R	16395426	3R_16395426_SNP [dm3] 3R_20569704_SNP [dm6]	G	A	8.073e^-4	0.996	INTRON CG5191
3R	16821401	3R_16821401_DEL [dm3] 3R_20995679_DEL [dm6]	AACATGGCTTCAA...	A	8.077e^-4	0.996	INTRON Calx
2L	10371561	2L_10371561_SNP [dm3] 2L_10371561_SNP [dm6]	G	T	8.078e^-4	0.996	SYNONYMOUS_CODING rho-5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10018935	3L_10018935_SNP [dm3] 3L_10025835_SNP [dm6]	T	G	8.079e^-4	0.996	INTRON dpr6
2R	18206066	2R_18206066_DEL [dm3] 2R_22318561_DEL [dm6]	AGCAACAACA	A	8.082e^-4	0.996	UTR_5_PRIME Gp150 DOWNSTREAM CR44756 INTRON Gp150	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	3664741	2L_3664741_SNP [dm3] 2L_3664741_SNP [dm6]	T	A	8.083e^-4	0.996	INTRON CG34340
X	5448107	X_5448107_SNP [dm3] X_5554074_SNP [dm6]	T	C	8.085e^-4	0.996	INTRON Vsx2
2L	1975460	2L_1975460_SNP [dm3] 2L_1975460_SNP [dm6]	T	A	8.106e^-4	0.996	DOWNSTREAM CG15356 & 1 other INTERGENIC
2R	16984508	2R_16984508_SNP [dm3] 2R_21097003_SNP [dm6]	A	G	8.109e^-4	0.996	UPSTREAM CG34396 INTRON CG34396 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	10019283	2R_10019283_SNP [dm3] 2R_14131778_SNP [dm6]	G	C	8.127e^-4	0.996	INTRON Prosap	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13381438	3L_13381438_SNP [dm3] 3L_13388338_SNP [dm6]	T	C	8.130e^-4	0.996	UTR_3_PRIME Poc1 UPSTREAM CG10171
3L	13381440	3L_13381440_SNP [dm3] 3L_13388340_SNP [dm6]	G	T	8.130e^-4	0.996	UTR_3_PRIME Poc1 UPSTREAM CG10171
3L	13381488	3L_13381488_SNP [dm3] 3L_13388388_SNP [dm6]	T	A	8.130e^-4	0.996	UTR_3_PRIME Poc1 UPSTREAM CG10171	TF binding site mE1_TFBS_cad
X	15360169	X_15360169_SNP [dm3] X_15466136_SNP [dm6]	A	G	8.133e^-4	0.996	DOWNSTREAM CG15642 INTRON CG6299 & 1 other	TF binding site mE1_TFBS_chinmo
3L	18141789	3L_18141789_SNP [dm3] 3L_18148689_SNP [dm6]	G	A	8.134e^-4	0.996	UPSTREAM CG7330 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	24093906	3R_24093906_SNP [dm3] 3R_28268184_SNP [dm6]	A	G	8.135e^-4	0.996	INTERGENIC
2R	19675945	2R_19675945_SNP [dm3] 2R_23788422_SNP [dm6]	T	C	8.136e^-4	0.996	INTRON CG9850
2R	19675952	2R_19675952_SNP [dm3] 2R_23788429_SNP [dm6]	G	A	8.136e^-4	0.996	INTRON CG9850
3L	15202186	3L_15202186_SNP [dm3] 3L_15209086_SNP [dm6]	T	A	8.160e^-4	0.996	DOWNSTREAM CG6888 INTERGENIC
2R	3553527	2R_3553527_SNP [dm3] 2R_7666022_SNP [dm6]	T	A	8.164e^-4	0.996	DOWNSTREAM CG2065 INTRON CG2064	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	10367673	3L_10367673_INS [dm3] 3L_10374573_INS [dm6]	T	TT	8.170e^-4	0.996	INTERGENIC
3R	16337602	3R_16337602_SNP [dm3] 3R_20511880_SNP [dm6]	T	G	8.186e^-4	0.996	INTRON CG4288	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	18732046	X_18732046_SNP [dm3] X_18838013_SNP [dm6]	G	A	8.193e^-4	0.996	UTR_5_PRIME Pvf1 INTRON Pvf1
3R	11591946	3R_11591946_DEL [dm3] 3R_15766224_DEL [dm6]	AA	A	8.229e^-4	0.996	DOWNSTREAM CG5623 INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	7937141	2R_7937141_SNP [dm3] 2R_12049636_SNP [dm6]	T	G	8.236e^-4	0.996	UTR_3_PRIME Drep-1
3L	8216120	3L_8216120_SNP [dm3] 3L_8223020_SNP [dm6]	A	C	8.240e^-4	0.996	DOWNSTREAM CG13678 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4669473	3L_4669473_SNP [dm3] 3L_4669473_SNP [dm6]	C	T	8.251e^-4	0.996	INTRON axo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16062647	3L_16062647_SNP [dm3] 3L_16069547_SNP [dm6]	C	T	8.255e^-4	0.996	INTRON Mbs

Missing results

By genomic position
Variant impact
Gene name

pc_FL_PElem_GS phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results