DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.126e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.0986

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

986 significant hits at p-value < 0.001.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	13270958	2R_13270958_SNP [dm3] 2R_17383453_SNP [dm6]	A	G	3.628e^-7	0.242	INTERGENIC
2R	13270898	2R_13270898_SNP [dm3] 2R_17383393_SNP [dm6]	A	G	4.000e^-7	0.242	INTERGENIC
2R	13270943	2R_13270943_SNP [dm3] 2R_17383438_SNP [dm6]	T	C	4.000e^-7	0.242	INTERGENIC
2R	13270922	2R_13270922_SNP [dm3] 2R_17383417_SNP [dm6]	G	A	1.093e^-6	0.496	INTERGENIC
X	19733556	X_19733556_SNP [dm3] X_19839523_SNP [dm6]	A	C	5.942e^-6	0.981	INTRON pico
X	19733579	X_19733579_DEL [dm3] X_19839546_DEL [dm6]	ATTGTG	TCC	5.942e^-6	0.981	INTRON pico
X	19733587	X_19733587_DEL [dm3] X_19839554_DEL [dm6]	TTGGA	T	5.942e^-6	0.981	INTRON pico
X	19733667	X_19733667_SNP [dm3] X_19839634_SNP [dm6]	T	A	5.942e^-6	0.981	INTRON pico
X	19733682	X_19733682_INS [dm3] X_19839649_INS [dm6]	AA	TCATT	5.942e^-6	0.981	INTRON pico
X	19733687	X_19733687_SNP [dm3] X_19839654_SNP [dm6]	A	T	5.942e^-6	0.981	INTRON pico
X	19733690	X_19733690_INS [dm3] X_19839657_INS [dm6]	A	ATTA	5.942e^-6	0.981	INTRON pico
3L	4160835	3L_4160835_SNP [dm3] 3L_4160835_SNP [dm6]	A	T	8.483e^-6	1	UTR_5_PRIME nab DOWNSTREAM mas	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2R	14089065	2R_14089065_SNP [dm3] 2R_18201560_SNP [dm6]	G	A	8.632e^-6	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14089075	2R_14089075_SNP [dm3] 2R_18201570_SNP [dm6]	T	A	8.632e^-6	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9312830	2L_9312830_SNP [dm3] 2L_9312830_SNP [dm6]	G	A	1.187e^-5	1	INTERGENIC
3L	4160837	3L_4160837_SNP [dm3] 3L_4160837_SNP [dm6]	A	T	1.575e^-5	1	UTR_5_PRIME nab DOWNSTREAM mas	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
X	19733666	X_19733666_SNP [dm3] X_19839633_SNP [dm6]	A	T	1.650e^-5	1	INTRON pico
2R	14089068	2R_14089068_SNP [dm3] 2R_18201563_SNP [dm6]	A	G	1.708e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19733502	X_19733502_INS [dm3] X_19839469_INS [dm6]	G	GAT	1.841e^-5	1	INTRON pico
X	19733517	X_19733517_SNP [dm3] X_19839484_SNP [dm6]	T	C	1.841e^-5	1	INTRON pico
X	19733516	X_19733516_SNP [dm3] X_19839483_SNP [dm6]	G	A	2.403e^-5	1	INTRON pico
X	19311636	X_19311636_DEL [dm3] X_19417603_DEL [dm6]	TT	T	2.794e^-5	1	INTRON kek5
2L	13294440	2L_13294440_SNP [dm3] 2L_13294440_SNP [dm6]	A	G	2.877e^-5	1	INTRON CG31729	TF binding site BDTNP1_TFBS_twi
3L	3911987	3L_3911987_SNP [dm3] 3L_3911987_SNP [dm6]	A	T	3.362e^-5	1	INTRON Eip63F-1
3L	3911986	3L_3911986_SNP [dm3] 3L_3911986_SNP [dm6]	A	T	3.469e^-5	1	INTRON Eip63F-1
3L	13705299	3L_13705299_SNP [dm3] 3L_13712199_SNP [dm6]	C	T	3.592e^-5	1	INTRON bru-3
2R	12356352	2R_12356352_SNP [dm3] 2R_16468847_SNP [dm6]	C	T	3.716e^-5	1	SYNONYMOUS_CODING CheB53b
3R	22458144	3R_22458144_SNP [dm3] 3R_26632422_SNP [dm6]	A	T	3.865e^-5	1	SYNONYMOUS_CODING TwdlN	TF binding site mE1_TFBS_HSA
3R	17238771	3R_17238771_SNP [dm3] 3R_21413049_SNP [dm6]	G	T	3.979e^-5	1	INTRON lbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7631661	2L_7631661_SNP [dm3] 2L_7631661_SNP [dm6]	T	C	4.064e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_hb
3R	20464852	3R_20464852_SNP [dm3] 3R_24639130_SNP [dm6]	A	C	4.348e^-5	1	INTRON puf
2L	1433301	2L_1433301_SNP [dm3] 2L_1433301_SNP [dm6]	A	T	4.669e^-5	1	DOWNSTREAM snRNA:U3:22A INTERGENIC
2R	11972589	2R_11972589_SNP [dm3] 2R_16085084_SNP [dm6]	G	A	4.965e^-5	1	SYNONYMOUS_CODING Dg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	12488494	3L_12488494_SNP [dm3] 3L_12495394_SNP [dm6]	A	T	5.349e^-5	1	INTRON CG10657	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi BDTNP1_TFBS_z
2R	15872435	2R_15872435_SNP [dm3] 2R_19984930_SNP [dm6]	G	T	5.756e^-5	1	DOWNSTREAM CG8654 INTERGENIC
3L	12896929	3L_12896929_SNP [dm3] 3L_12903829_SNP [dm6]	A	T	6.137e^-5	1	UPSTREAM CG32117 INTERGENIC
2R	6362378	2R_6362378_SNP [dm3] 2R_10474873_SNP [dm6]	T	G	6.453e^-5	1	INTRON whd
2R	18294779	2R_18294779_SNP [dm3] 2R_22407274_SNP [dm6]	C	G	6.455e^-5	1	NON_SYNONYMOUS_CODING CG6044	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	10964271	3L_10964271_SNP [dm3] 3L_10971171_SNP [dm6]	G	A	7.042e^-5	1	INTERGENIC
2R	9740764	2R_9740764_SNP [dm3] 2R_13853259_SNP [dm6]	C	G	7.199e^-5	1	SYNONYMOUS_CODING CG6543 DOWNSTREAM CG30485	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_sna mE1_TFBS_inv
2L	14496315	2L_14496315_SNP [dm3] 2L_14496315_SNP [dm6]	A	G	7.520e^-5	1	DOWNSTREAM tRNA:P:35Bd & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
X	2893998	X_2893998_SNP [dm3] X_2999965_SNP [dm6]	T	A	7.626e^-5	1	INTRON kirre
3L	1287791	3L_1287791_SNP [dm3] 3L_1287791_SNP [dm6]	C	G	7.672e^-5	1	INTRON CG32333
3R	25139782	3R_25139782_SNP [dm3] 3R_29314060_SNP [dm6]	C	T	7.993e^-5	1	INTERGENIC
2L	9464953	2L_9464953_MNP [dm3] 2L_9464953_MNP [dm6]	TTGT	GACA	8.220e^-5	1	DOWNSTREAM numb INTERGENIC	TF binding site mE1_TFBS_bab1
3R	15319882	3R_15319882_SNP [dm3] 3R_19494160_SNP [dm6]	T	G	8.275e^-5	1	INTRON Dys
3R	17238120	3R_17238120_SNP [dm3] 3R_21412398_SNP [dm6]	G	A	8.634e^-5	1	INTRON lbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2R	11042873	2R_11042873_SNP [dm3] 2R_15155368_SNP [dm6]	C	A	8.879e^-5	1	UPSTREAM igl INTERGENIC
3L	3911964	3L_3911964_SNP [dm3] 3L_3911964_SNP [dm6]	A	T	8.930e^-5	1	INTRON Eip63F-1
2R	8381782	2R_8381782_SNP [dm3] 2R_12494277_SNP [dm6]	T	C	9.007e^-5	1	INTRON fdl
2R	6675954	2R_6675954_SNP [dm3] 2R_10788449_SNP [dm6]	C	T	9.138e^-5	1	INTRON CG33144
2L	2837302	2L_2837302_SNP [dm3] 2L_2837302_SNP [dm6]	A	T	9.185e^-5	1	INTRON CG3119	TF binding site mE1_TFBS_cad
2L	17036882	2L_17036882_SNP [dm3] 2L_17036882_SNP [dm6]	G	C	9.188e^-5	1	INTERGENIC
3R	15675157	3R_15675157_INS [dm3] 3R_19849435_INS [dm6]	G	GTCCCCAG	9.278e^-5	1	INTRON CG4662
2L	6008506	2L_6008506_SNP [dm3] 2L_6008506_SNP [dm6]	A	G	9.289e^-5	1	SPLICE_SITE_REGION CG9098 INTRON CG9098
2R	6582321	2R_6582321_SNP [dm3] 2R_10694816_SNP [dm6]	A	T	9.524e^-5	1	INTRON stan	TF binding site mE1_TFBS_HSA
2R	3236828	2R_3236828_SNP [dm3] 2R_7349323_SNP [dm6]	C	T	9.603e^-5	1	INTRON Dscam1
3L	13368524	3L_13368524_SNP [dm3] 3L_13375424_SNP [dm6]	T	C	9.630e^-5	1	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	13225531	3L_13225531_SNP [dm3] 3L_13232431_SNP [dm6]	C	T	9.916e^-5	1	INTRON caps
3L	1384957	3L_1384957_SNP [dm3] 3L_1384957_SNP [dm6]	C	T	1.018e^-4	1	INTRON Ptp61F & 1 other
3L	3023485	3L_3023485_SNP [dm3] 3L_3023485_SNP [dm6]	G	A	1.082e^-4	1	DOWNSTREAM aly INTERGENIC
2R	13373129	2R_13373129_SNP [dm3] 2R_17485624_SNP [dm6]	T	C	1.166e^-4	1	UTR_5_PRIME CG43110 INTRON NT5E-2
2R	13383336	2R_13383336_SNP [dm3] 2R_17495831_SNP [dm6]	C	T	1.167e^-4	1	UTR_3_PRIME CG30103	TF binding site mE1_TFBS_cad
2L	20474889	2L_20474889_SNP [dm3] 2L_20474889_SNP [dm6]	C	T	1.175e^-4	1	INTRON CR44980
2L	20474914	2L_20474914_SNP [dm3] 2L_20474914_SNP [dm6]	G	T	1.175e^-4	1	INTRON CR44980
3R	26601969	3R_26601969_SNP [dm3] 3R_30776247_SNP [dm6]	C	T	1.186e^-4	1	INTRON zfh1	TF binding site BDTNP1_TFBS_dl
3R	21948838	3R_21948838_SNP [dm3] 3R_26123116_SNP [dm6]	T	A	1.190e^-4	1	INTRON CG31324
2R	19645557	2R_19645557_SNP [dm3] 2R_23758034_SNP [dm6]	A	G	1.202e^-4	1	SYNONYMOUS_CODING CG9850
2L	13710150	2L_13710150_SNP [dm3] 2L_13710150_SNP [dm6]	G	C	1.205e^-4	1	NON_SYNONYMOUS_CODING CG7311 UTR_3_PRIME CG7311 INTRON CG31814	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	2916599	2R_2916599_SNP [dm3] 2R_7029094_SNP [dm6]	G	A	1.245e^-4	1	UTR_5_PRIME Tsp42Eg
3R	19211856	3R_19211856_SNP [dm3] 3R_23386134_SNP [dm6]	A	G	1.303e^-4	1	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	9339118	2L_9339118_SNP [dm3] 2L_9339118_SNP [dm6]	C	T	1.322e^-4	1	INTRON Eaat1
X	7875913	X_7875913_SNP [dm3] X_7981880_SNP [dm6]	T	C	1.339e^-4	1	INTRON sn
3L	3596801	3L_3596801_SNP [dm3] 3L_3596801_SNP [dm6]	T	A	1.341e^-4	1	INTRON Eip63E
3R	2285727	3R_2285727_SNP [dm3] 3R_6460005_SNP [dm6]	T	C	1.355e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	5692185	3L_5692185_SNP [dm3] 3L_5699085_SNP [dm6]	A	G	1.376e^-4	1	INTRON sif	TF binding site mE1_TFBS_chinmo
2L	6957910	2L_6957910_SNP [dm3] 2L_6957910_SNP [dm6]	C	T	1.386e^-4	1	SYNONYMOUS_CODING CG3430 UPSTREAM CG13775	TF binding site mE1_TFBS_sens
3R	13572008	3R_13572008_SNP [dm3] 3R_17746286_SNP [dm6]	C	T	1.395e^-4	1	UTR_3_PRIME TyrRII DOWNSTREAM TyrRII
3R	13572015	3R_13572015_INS [dm3] 3R_17746293_INS [dm6]	A	AA	1.395e^-4	1	UTR_3_PRIME TyrRII DOWNSTREAM TyrRII
2L	9464925	2L_9464925_SNP [dm3] 2L_9464925_SNP [dm6]	C	G	1.459e^-4	1	DOWNSTREAM numb INTERGENIC	TF binding site mE1_TFBS_bab1
X	10717022	X_10717022_INS [dm3] X_10822989_INS [dm6]	T	TGTA	1.498e^-4	1	UPSTREAM Imp INTRON Imp	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	8661008	2L_8661008_SNP [dm3] 2L_8661008_SNP [dm6]	C	T	1.499e^-4	1	INTRON Sema-1a
2R	18260070	2R_18260070_SNP [dm3] 2R_22372565_SNP [dm6]	T	C	1.515e^-4	1	INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl
2R	18260071	2R_18260071_SNP [dm3] 2R_22372566_SNP [dm6]	T	A	1.515e^-4	1	INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl
2R	18260089	2R_18260089_SNP [dm3] 2R_22372584_SNP [dm6]	A	C	1.515e^-4	1	INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl
2R	18260101	2R_18260101_SNP [dm3] 2R_22372596_SNP [dm6]	T	C	1.515e^-4	1	INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl
2L	381570	2L_381570_INS [dm3] 2L_381570_INS [dm6]	T	TT	1.518e^-4	1	INTRON al	TF binding site mE1_TFBS_HSA
2R	12356183	2R_12356183_SNP [dm3] 2R_16468678_SNP [dm6]	C	T	1.543e^-4	1	SYNONYMOUS_CODING CheB53b
2R	13496591	2R_13496591_SNP [dm3] 2R_17609086_SNP [dm6]	C	T	1.565e^-4	1	SYNONYMOUS_CODING CG10936
3L	13702833	3L_13702833_SNP [dm3] 3L_13709733_SNP [dm6]	C	T	1.617e^-4	1	INTRON bru-3
3R	13572036	3R_13572036_SNP [dm3] 3R_17746314_SNP [dm6]	G	T	1.618e^-4	1	UTR_3_PRIME TyrRII DOWNSTREAM TyrRII
2R	9895520	2R_9895520_SNP [dm3] 2R_14008015_SNP [dm6]	C	T	1.643e^-4	1	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	13821783	2R_13821783_SNP [dm3] 2R_17934278_SNP [dm6]	C	G	1.651e^-4	1	INTERGENIC
2R	9334303	2R_9334303_SNP [dm3] 2R_13446798_SNP [dm6]	G	A	1.667e^-4	1	UPSTREAM CG30062 INTRON cnn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	3460236	2R_3460236_SNP [dm3] 2R_7572731_SNP [dm6]	T	G	1.716e^-4	1	INTRON Vps13
3L	13368981	3L_13368981_SNP [dm3] 3L_13375881_SNP [dm6]	T	G	1.719e^-4	1	INTERGENIC
3L	14075057	3L_14075057_SNP [dm3] 3L_14081957_SNP [dm6]	A	C	1.727e^-4	1	SYNONYMOUS_CODING btl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	3492110	2R_3492110_SNP [dm3] 2R_7604605_SNP [dm6]	G	A	1.768e^-4	1	INTRON CG1358	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14089030	2R_14089030_SNP [dm3] 2R_18201525_SNP [dm6]	C	G	1.775e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6951584	2L_6951584_SNP [dm3] 2L_6951584_SNP [dm6]	C	G	1.786e^-4	1	INTRON SA
2L	6951588	2L_6951588_SNP [dm3] 2L_6951588_SNP [dm6]	A	T	1.786e^-4	1	INTRON SA
2R	2754137	2R_2754137_SNP [dm3] 2R_6866632_SNP [dm6]	C	T	1.790e^-4	1	INTRON coro
2L	1639223	2L_1639223_SNP [dm3] 2L_1639223_SNP [dm6]	T	C	1.791e^-4	1	INTERGENIC
2R	12203469	2R_12203469_SNP [dm3] 2R_16315964_SNP [dm6]	G	C	1.795e^-4	1	SPLICE_SITE_REGION Nox DOWNSTREAM CG8060 INTRON Nox	TF binding site mE1_TFBS_cad
2R	12203479	2R_12203479_SNP [dm3] 2R_16315974_SNP [dm6]	T	C	1.795e^-4	1	DOWNSTREAM CG8060 INTRON Nox	TF binding site mE1_TFBS_cad
2L	17767749	2L_17767749_SNP [dm3] 2L_17767749_SNP [dm6]	G	A	1.817e^-4	1	INTRON CadN
2R	19241880	2R_19241880_SNP [dm3] 2R_23354357_SNP [dm6]	A	G	1.834e^-4	1	UPSTREAM CG30409 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	19241891	2R_19241891_SNP [dm3] 2R_23354368_SNP [dm6]	A	G	1.834e^-4	1	UTR_5_PRIME CG30409 UPSTREAM Rpi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	1241527	2L_1241527_SNP [dm3] 2L_1241527_SNP [dm6]	G	A	1.839e^-4	1	SYNONYMOUS_CODING CG5397
3L	15263229	3L_15263229_SNP [dm3] 3L_15270129_SNP [dm6]	C	A	1.843e^-4	1	INTERGENIC
3L	9512810	3L_9512810_SNP [dm3] 3L_9519710_SNP [dm6]	T	C	1.872e^-4	1	INTRON CG33700
3L	8659933	3L_8659933_DEL [dm3] 3L_8666833_DEL [dm6]	CCC	C	1.881e^-4	1	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
2L	20071009	2L_20071009_SNP [dm3] 2L_20071009_SNP [dm6]	G	A	1.900e^-4	1	SYNONYMOUS_CODING CG10730 INTRON bwa	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1629264	3L_1629264_SNP [dm3] 3L_1629264_SNP [dm6]	G	A	1.946e^-4	1	UTR_5_PRIME GC UPSTREAM CG13928	TF binding site mE1_TFBS_chinmo
2L	6949574	2L_6949574_SNP [dm3] 2L_6949574_SNP [dm6]	A	G	1.981e^-4	1	UPSTREAM ihog & 1 other INTRON Gas41	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	6949582	2L_6949582_SNP [dm3] 2L_6949582_SNP [dm6]	C	T	1.981e^-4	1	UPSTREAM ihog & 1 other INTRON Gas41	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	15489795	2R_15489795_SNP [dm3] 2R_19602290_SNP [dm6]	G	T	1.985e^-4	1	INTRON sm
2R	19256129	2R_19256129_SNP [dm3] 2R_23368606_SNP [dm6]	A	G	1.987e^-4	1	SYNONYMOUS_CODING Ice1	TF binding site mE1_TFBS_cad
2L	17064948	2L_17064948_SNP [dm3] 2L_17064948_SNP [dm6]	G	T	2.000e^-4	1	INTERGENIC
2L	20077417	2L_20077417_SNP [dm3] 2L_20077417_SNP [dm6]	T	A	2.028e^-4	1	INTRON neb
2R	7663121	2R_7663121_SNP [dm3] 2R_11775616_SNP [dm6]	T	C	2.031e^-4	1	INTRON ths
2L	5598	2L_5598_SNP [dm3] 2L_5598_SNP [dm6]	C	G	2.045e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14796850	2R_14796850_SNP [dm3] 2R_18909345_SNP [dm6]	A	G	2.048e^-4	1	SYNONYMOUS_CODING Vha100-3 INTRON sano
3R	17295567	3R_17295567_SNP [dm3] 3R_21469845_SNP [dm6]	G	T	2.090e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_D
3R	13922832	3R_13922832_SNP [dm3] 3R_18097110_SNP [dm6]	A	C	2.102e^-4	1	INTRON sr
2R	13384851	2R_13384851_SNP [dm3] 2R_17497346_SNP [dm6]	C	T	2.156e^-4	1	INTERGENIC
2L	10905612	2L_10905612_SNP [dm3] 2L_10905612_SNP [dm6]	G	A	2.183e^-4	1	DOWNSTREAM CG7309 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	10905614	2L_10905614_SNP [dm3] 2L_10905614_SNP [dm6]	C	T	2.183e^-4	1	DOWNSTREAM CG7309 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	20782390	3R_20782390_SNP [dm3] 3R_24956668_SNP [dm6]	T	A	2.197e^-4	1	INTERGENIC
X	1890198	X_1890198_SNP [dm3] X_1996165_SNP [dm6]	A	C	2.207e^-4	1	INTRON Hr4	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	3020169	2R_3020169_SNP [dm3] 2R_7132664_SNP [dm6]	G	A	2.220e^-4	1	UPSTREAM Cyp9b2 INTERGENIC
3R	23668406	3R_23668406_SNP [dm3] 3R_27842684_SNP [dm6]	G	C	2.253e^-4	1	INTRON CG34353
2R	18260039	2R_18260039_SNP [dm3] 2R_22372534_SNP [dm6]	G	A	2.273e^-4	1	INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl
2R	18260048	2R_18260048_SNP [dm3] 2R_22372543_SNP [dm6]	T	G	2.273e^-4	1	INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl
2L	20068818	2L_20068818_SNP [dm3] 2L_20068818_SNP [dm6]	A	T	2.273e^-4	1	INTRON bwa EXON CR44907
2L	20077326	2L_20077326_SNP [dm3] 2L_20077326_SNP [dm6]	G	T	2.290e^-4	1	INTRON neb
2L	20077342	2L_20077342_SNP [dm3] 2L_20077342_SNP [dm6]	C	T	2.290e^-4	1	INTRON neb
X	15429829	X_15429829_SNP [dm3] X_15535796_SNP [dm6]	G	C	2.304e^-4	1	INTRON Ac13E
2L	20075145	2L_20075145_SNP [dm3] 2L_20075145_SNP [dm6]	C	T	2.321e^-4	1	UTR_5_PRIME pr UPSTREAM neb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13282981	2R_13282981_SNP [dm3] 2R_17395476_SNP [dm6]	T	G	2.326e^-4	1	INTRON Sip1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_Trl
3R	13922846	3R_13922846_SNP [dm3] 3R_18097124_SNP [dm6]	C	A	2.341e^-4	1	INTRON sr
2R	10122742	2R_10122742_SNP [dm3] 2R_14235237_SNP [dm6]	G	C	2.351e^-4	1	DOWNSTREAM CG8485 INTRON Opa1	TF binding site mE1_TFBS_bab1
2L	20069824	2L_20069824_SNP [dm3] 2L_20069824_SNP [dm6]	A	G	2.353e^-4	1	UPSTREAM CR44907 DOWNSTREAM CG10730 INTRON bwa	TF binding site mE1_TFBS_cad
X	4787134	X_4787134_SNP [dm3] X_4893101_SNP [dm6]	A	T	2.357e^-4	1	INTRON CG42594
2L	20474750	2L_20474750_SNP [dm3] 2L_20474750_SNP [dm6]	C	T	2.358e^-4	1	INTRON CR44980
2R	14796871	2R_14796871_SNP [dm3] 2R_18909366_SNP [dm6]	C	T	2.358e^-4	1	SYNONYMOUS_CODING Vha100-3 INTRON sano
3L	13705332	3L_13705332_SNP [dm3] 3L_13712232_SNP [dm6]	T	A	2.362e^-4	1	INTRON bru-3
2L	19923642	2L_19923642_SNP [dm3] 2L_19923642_SNP [dm6]	A	T	2.377e^-4	1	DOWNSTREAM CR43827 INTRON sick
2L	20068433	2L_20068433_DEL [dm3] 2L_20068433_DEL [dm6]	TT	T	2.384e^-4	1	DOWNSTREAM CR44907 INTRON bwa
3L	12028199	3L_12028199_SNP [dm3] 3L_12035099_SNP [dm6]	G	A	2.414e^-4	1	INTRON rols	TF binding site BDTNP1_TFBS_twi
3R	2136880	3R_2136880_SNP [dm3] 3R_6311158_SNP [dm6]	G	A	2.423e^-4	1	UPSTREAM Osi17 DOWNSTREAM CG31560 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	2136881	3R_2136881_SNP [dm3] 3R_6311159_SNP [dm6]	T	A	2.423e^-4	1	UPSTREAM Osi17 DOWNSTREAM CG31560 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	3843812	2R_3843812_SNP [dm3] 2R_7956307_SNP [dm6]	A	C	2.450e^-4	1	UPSTREAM CG14764 INTRON CG2906	TF binding site BDTNP1_TFBS_dl
2R	3843852	2R_3843852_SNP [dm3] 2R_7956347_SNP [dm6]	T	C	2.450e^-4	1	UPSTREAM CG14764 INTRON CG2906	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3843888	2R_3843888_SNP [dm3] 2R_7956383_SNP [dm6]	T	A	2.450e^-4	1	UPSTREAM CG14764 INTRON CG2906	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9335617	2R_9335617_SNP [dm3] 2R_13448112_SNP [dm6]	C	T	2.483e^-4	1	INTRON cnn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	19742420	X_19742420_SNP [dm3] X_19848387_SNP [dm6]	A	T	2.487e^-4	1	UTR_5_PRIME pico INTRON pico	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3781640	2R_3781640_SNP [dm3] 2R_7894135_SNP [dm6]	A	G	2.520e^-4	1	INTRON CG30377
3L	11383402	3L_11383402_SNP [dm3] 3L_11390302_SNP [dm6]	A	C	2.527e^-4	1	INTERGENIC
2R	15872434	2R_15872434_SNP [dm3] 2R_19984929_SNP [dm6]	C	T	2.597e^-4	1	DOWNSTREAM CG8654 INTERGENIC
2L	17025919	2L_17025919_SNP [dm3] 2L_17025919_SNP [dm6]	G	T	2.647e^-4	1	INTERGENIC
2R	18025088	2R_18025088_INS [dm3] 2R_22137583_INS [dm6]	A	AAA	2.677e^-4	1	UTR_5_PRIME a INTRON a	TF binding site mE1_TFBS_run
2R	2754134	2R_2754134_SNP [dm3] 2R_6866629_SNP [dm6]	C	T	2.688e^-4	1	INTRON coro
3R	20871322	3R_20871322_SNP [dm3] 3R_25045600_SNP [dm6]	T	C	2.689e^-4	1	UPSTREAM 5PtaseI & 1 other INTERGENIC
2R	7663096	2R_7663096_SNP [dm3] 2R_11775591_SNP [dm6]	T	C	2.695e^-4	1	INTRON ths
2R	3843499	2R_3843499_SNP [dm3] 2R_7955994_SNP [dm6]	T	C	2.701e^-4	1	UPSTREAM CG2906 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl
3L	12587747	3L_12587747_SNP [dm3] 3L_12594647_SNP [dm6]	C	T	2.713e^-4	1	SYNONYMOUS_CODING ara	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14527255	X_14527255_SNP [dm3] X_14633222_SNP [dm6]	G	A	2.714e^-4	1	INTRON NetA
3R	15675150	3R_15675150_INS [dm3] 3R_19849428_INS [dm6]	C	TG	2.723e^-4	1	INTRON CG4662
2R	3840412	2R_3840412_SNP [dm3] 2R_7952907_SNP [dm6]	T	A	2.752e^-4	1	INTRON CG14764
2R	18796935	2R_18796935_INS [dm3] 2R_22909412_INS [dm6]	T	TTTGTTGCCAAGAACGAGCT...	2.776e^-4	1	INTRON nahoda
X	19742461	X_19742461_SNP [dm3] X_19848428_SNP [dm6]	T	C	2.803e^-4	1	UTR_5_PRIME pico INTRON pico	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	3912038	3L_3912038_DEL [dm3] 3L_3912038_DEL [dm6]	ACCACAAT	A	2.803e^-4	1	INTRON Eip63F-1
3L	3912047	3L_3912047_SNP [dm3] 3L_3912047_SNP [dm6]	G	A	2.803e^-4	1	INTRON Eip63F-1
2R	18273943	2R_18273943_SNP [dm3] 2R_22386438_SNP [dm6]	C	A	2.807e^-4	1	UTR_5_PRIME CG13506 UPSTREAM CR44757
2L	19978456	2L_19978456_SNP [dm3] 2L_19978456_SNP [dm6]	A	T	2.816e^-4	1	UPSTREAM CR43620 INTRON CG43861
2R	16200214	2R_16200214_SNP [dm3] 2R_20312709_SNP [dm6]	T	A	2.844e^-4	1	INTRON CG13868	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6735805	2R_6735805_SNP [dm3] 2R_10848300_SNP [dm6]	A	G	2.883e^-4	1	INTRON CG30015
2R	6735813	2R_6735813_SNP [dm3] 2R_10848308_SNP [dm6]	C	T	2.883e^-4	1	INTRON CG30015
2R	16003031	2R_16003031_SNP [dm3] 2R_20115526_SNP [dm6]	A	T	2.888e^-4	1	SYNONYMOUS_CODING 18w	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	12293484	X_12293484_SNP [dm3] X_12399451_SNP [dm6]	G	A	2.898e^-4	1	INTERGENIC
2L	14432842	2L_14432842_SNP [dm3] 2L_14432842_SNP [dm6]	A	T	2.918e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_sens
X	19732970	X_19732970_SNP [dm3] X_19838937_SNP [dm6]	A	T	2.938e^-4	1	INTRON pico	TF binding site mE1_TFBS_sens
X	19733008	X_19733008_SNP [dm3] X_19838975_SNP [dm6]	T	A	2.938e^-4	1	INTRON pico	TF binding site mE1_TFBS_sens
X	19733066	X_19733066_INS [dm3] X_19839033_INS [dm6]	T	TCT	2.938e^-4	1	INTRON pico	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19733752	X_19733752_INS [dm3] X_19839719_INS [dm6]	T	TTT	2.938e^-4	1	INTRON pico
X	19733799	X_19733799_SNP [dm3] X_19839766_SNP [dm6]	A	T	2.938e^-4	1	INTRON pico
X	19733945	X_19733945_SNP [dm3] X_19839912_SNP [dm6]	T	C	2.938e^-4	1	INTRON pico
X	19734032	X_19734032_SNP [dm3] X_19839999_SNP [dm6]	A	G	2.938e^-4	1	INTRON pico
X	19734403	X_19734403_SNP [dm3] X_19840370_SNP [dm6]	C	T	2.938e^-4	1	INTRON pico
X	19734743	X_19734743_SNP [dm3] X_19840710_SNP [dm6]	G	A	2.938e^-4	1	INTRON pico	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19735953	X_19735953_DEL [dm3] X_19841920_DEL [dm6]	GTA	G	2.938e^-4	1	INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	19735963	X_19735963_SNP [dm3] X_19841930_SNP [dm6]	T	A	2.938e^-4	1	INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	19735970	X_19735970_SNP [dm3] X_19841937_SNP [dm6]	G	A	2.938e^-4	1	INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	19735978	X_19735978_DEL [dm3] X_19841945_DEL [dm6]	AGCCCGA	A	2.938e^-4	1	INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	19735996	X_19735996_SNP [dm3] X_19841963_SNP [dm6]	A	G	2.938e^-4	1	INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	19736193	X_19736193_SNP [dm3] X_19842160_SNP [dm6]	G	T	2.938e^-4	1	INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
X	19736328	X_19736328_SNP [dm3] X_19842295_SNP [dm6]	A	G	2.938e^-4	1	INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	17133159	2L_17133159_SNP [dm3] 2L_17133159_SNP [dm6]	A	T	2.953e^-4	1	INTRON beat-IIIa & 1 other
3R	9423695	3R_9423695_SNP [dm3] 3R_13597973_SNP [dm6]	A	G	2.957e^-4	1	INTERGENIC
2L	5879825	2L_5879825_SNP [dm3] 2L_5879825_SNP [dm6]	T	C	2.959e^-4	1	UPSTREAM rau INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	13059709	3R_13059709_SNP [dm3] 3R_17233987_SNP [dm6]	A	C	2.961e^-4	1	INTRON beat-IIb
3L	4159861	3L_4159861_SNP [dm3] 3L_4159861_SNP [dm6]	C	A	2.977e^-4	1	INTRON nab	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3L	3915751	3L_3915751_SNP [dm3] 3L_3915751_SNP [dm6]	A	T	2.985e^-4	1	INTRON Eip63F-1
3L	3915759	3L_3915759_DEL [dm3] 3L_3915759_DEL [dm6]	AA	A	2.985e^-4	1	INTRON Eip63F-1
3L	3915773	3L_3915773_SNP [dm3] 3L_3915773_SNP [dm6]	C	T	2.985e^-4	1	INTRON Eip63F-1
3L	3915779	3L_3915779_INS [dm3] 3L_3915779_INS [dm6]	A	AA	2.985e^-4	1	INTRON Eip63F-1
3L	3915785	3L_3915785_SNP [dm3] 3L_3915785_SNP [dm6]	C	A	2.985e^-4	1	INTRON Eip63F-1
2R	18278732	2R_18278732_SNP [dm3] 2R_22391227_SNP [dm6]	C	A	2.988e^-4	1	INTRON CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3L	2337581	3L_2337581_SNP [dm3] 3L_2337581_SNP [dm6]	G	C	2.998e^-4	1	INTRON MsR1	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	19256099	2R_19256099_SNP [dm3] 2R_23368576_SNP [dm6]	C	T	2.999e^-4	1	SYNONYMOUS_CODING Ice1	TF binding site mE1_TFBS_cad
2R	19256135	2R_19256135_SNP [dm3] 2R_23368612_SNP [dm6]	C	T	2.999e^-4	1	SYNONYMOUS_CODING Ice1	TF binding site mE1_TFBS_cad
3R	16088818	3R_16088818_SNP [dm3] 3R_20263096_SNP [dm6]	C	T	3.007e^-4	1	INTRON cic	TF binding site mE1_TFBS_cad
2L	13691638	2L_13691638_SNP [dm3] 2L_13691638_SNP [dm6]	G	T	3.037e^-4	1	INTRON CG31814	TF binding site mE1_TFBS_sbb
2L	14542145	2L_14542145_SNP [dm3] 2L_14542145_SNP [dm6]	G	T	3.042e^-4	1	INTERGENIC
2R	9333421	2R_9333421_SNP [dm3] 2R_13445916_SNP [dm6]	C	T	3.048e^-4	1	SYNONYMOUS_CODING CG30062 UPSTREAM cnn INTRON cnn	TF binding site mE1_TFBS_HSA
2L	17064938	2L_17064938_SNP [dm3] 2L_17064938_SNP [dm6]	A	T	3.054e^-4	1	INTERGENIC
2L	20075110	2L_20075110_SNP [dm3] 2L_20075110_SNP [dm6]	A	C	3.055e^-4	1	UTR_5_PRIME pr UPSTREAM neb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17064988	2L_17064988_SNP [dm3] 2L_17064988_SNP [dm6]	G	A	3.078e^-4	1	INTERGENIC
3R	9649931	3R_9649931_SNP [dm3] 3R_13824209_SNP [dm6]	G	A	3.084e^-4	1	INTERGENIC
2R	14051582	2R_14051582_SNP [dm3] 2R_18164077_SNP [dm6]	C	A	3.090e^-4	1	UTR_3_PRIME CG10915 DOWNSTREAM Nup75
2R	19256151	2R_19256151_SNP [dm3] 2R_23368628_SNP [dm6]	G	A	3.112e^-4	1	NON_SYNONYMOUS_CODING Ice1	TF binding site mE1_TFBS_cad
2R	14148599	2R_14148599_SNP [dm3] 2R_18261094_SNP [dm6]	A	G	3.119e^-4	1	INTERGENIC
2R	12142398	2R_12142398_SNP [dm3] 2R_16254893_SNP [dm6]	G	A	3.136e^-4	1	SYNONYMOUS_CODING CngA
2R	1660853	2R_1660853_SNP [dm3] 2R_5773348_SNP [dm6]	T	C	3.138e^-4	1	UTR_3_PRIME Gp210 DOWNSTREAM Gp210	TF binding site BDTNP1_TFBS_dl
3L	10930675	3L_10930675_DEL [dm3] 3L_10937575_DEL [dm6]	TCT	T	3.155e^-4	1	INTERGENIC
3L	17785829	3L_17785829_SNP [dm3] 3L_17792729_SNP [dm6]	A	G	3.161e^-4	1	SYNONYMOUS_CODING CG42816
2R	9588075	2R_9588075_SNP [dm3] 2R_13700570_SNP [dm6]	T	A	3.201e^-4	1	INTRON fas
X	4559282	X_4559282_SNP [dm3] X_4665249_SNP [dm6]	C	T	3.202e^-4	1	INTRON CG3009
2L	10871059	2L_10871059_SNP [dm3] 2L_10871059_SNP [dm6]	A	G	3.204e^-4	1	UPSTREAM CR45454 DOWNSTREAM CG12517 EXON CR45453
2L	16395388	2L_16395388_SNP [dm3] 2L_16395388_SNP [dm6]	C	T	3.206e^-4	1	INTERGENIC
2L	17283145	2L_17283145_SNP [dm3] 2L_17283145_SNP [dm6]	C	A	3.207e^-4	1	INTERGENIC
2L	2882567	2L_2882567_SNP [dm3] 2L_2882567_SNP [dm6]	G	A	3.214e^-4	1	SYNONYMOUS_CODING NTPase INTRON NTPase	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	8433689	2R_8433689_SNP [dm3] 2R_12546184_SNP [dm6]	C	T	3.219e^-4	1	SYNONYMOUS_CODING CG33752 INTRON fra
2R	11039916	2R_11039916_SNP [dm3] 2R_15152411_SNP [dm6]	T	C	3.229e^-4	1	INTERGENIC
3L	3915767	3L_3915767_SNP [dm3] 3L_3915767_SNP [dm6]	G	C	3.252e^-4	1	INTRON Eip63F-1
2R	10071129	2R_10071129_SNP [dm3] 2R_14183624_SNP [dm6]	T	C	3.259e^-4	1	DOWNSTREAM cg INTERGENIC
3L	13975426	3L_13975426_SNP [dm3] 3L_13982326_SNP [dm6]	C	G	3.259e^-4	1	NON_SYNONYMOUS_CODING CG17364 INTRON CG17364
3R	20464827	3R_20464827_SNP [dm3] 3R_24639105_SNP [dm6]	G	T	3.281e^-4	1	INTRON puf
X	4559289	X_4559289_SNP [dm3] X_4665256_SNP [dm6]	G	A	3.287e^-4	1	INTRON CG3009
2R	18273946	2R_18273946_SNP [dm3] 2R_22386441_SNP [dm6]	T	C	3.319e^-4	1	UTR_5_PRIME CG13506 UPSTREAM CR44757
3L	12897467	3L_12897467_SNP [dm3] 3L_12904367_SNP [dm6]	G	A	3.326e^-4	1	UPSTREAM CG32117 INTERGENIC
3R	19568547	3R_19568547_SNP [dm3] 3R_23742825_SNP [dm6]	A	T	3.359e^-4	1	INTRON Hmgcr
3L	17795356	3L_17795356_SNP [dm3] 3L_17802256_SNP [dm6]	C	T	3.414e^-4	1	UTR_5_PRIME NUCB1 DOWNSTREAM CG5589	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17795434	3L_17795434_SNP [dm3] 3L_17802334_SNP [dm6]	G	A	3.414e^-4	1	UPSTREAM NUCB1 DOWNSTREAM CG5589 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	556773	2L_556773_SNP [dm3] 2L_556773_SNP [dm6]	T	G	3.420e^-4	1	SYNONYMOUS_CODING rempA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12142434	2R_12142434_SNP [dm3] 2R_16254929_SNP [dm6]	G	T	3.421e^-4	1	INTRON CngA
2R	18278741	2R_18278741_SNP [dm3] 2R_22391236_SNP [dm6]	G	A	3.422e^-4	1	INTRON CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
X	19733069	X_19733069_SNP [dm3] X_19839036_SNP [dm6]	C	A	3.426e^-4	1	INTRON pico	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14089085	2R_14089085_INS [dm3] 2R_18201580_INS [dm6]	T	TATATTG	3.438e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1252280	3L_1252280_SNP [dm3] 3L_1252280_SNP [dm6]	C	T	3.440e^-4	1	SYNONYMOUS_CODING CG9130 START_GAINED CG9133 UTR_5_PRIME CG9133 DOWNSTREAM CG9129	TF binding site mE1_TFBS_cad
X	6007436	X_6007436_SNP [dm3] X_6113403_SNP [dm6]	T	C	3.448e^-4	1	NON_SYNONYMOUS_CODING Ca-alpha1T	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7259645	2L_7259645_SNP [dm3] 2L_7259645_SNP [dm6]	T	C	3.451e^-4	1	INTRON Wnt4
3R	22497942	3R_22497942_SNP [dm3] 3R_26672220_SNP [dm6]	T	C	3.454e^-4	1	INTRON beat-VII	TF binding site BDTNP1_TFBS_twi
X	6005925	X_6005925_SNP [dm3] X_6111892_SNP [dm6]	T	A	3.462e^-4	1	INTRON Ca-alpha1T	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21724154	3R_21724154_SNP [dm3] 3R_25898432_SNP [dm6]	C	G	3.479e^-4	1	NON_SYNONYMOUS_CODING MCO3
X	19733646	X_19733646_SNP [dm3] X_19839613_SNP [dm6]	A	G	3.481e^-4	1	INTRON pico
X	4787116	X_4787116_SNP [dm3] X_4893083_SNP [dm6]	G	T	3.483e^-4	1	INTRON CG42594
X	4787123	X_4787123_INS [dm3] X_4893090_INS [dm6]	T	TA	3.483e^-4	1	INTRON CG42594
2L	3148793	2L_3148793_SNP [dm3] 2L_3148793_SNP [dm6]	T	G	3.490e^-4	1	INTRON Mad	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	15257847	2L_15257847_SNP [dm3] 2L_15257847_SNP [dm6]	A	G	3.499e^-4	1	SYNONYMOUS_CODING yuri DOWNSTREAM l_2_35Cc
3L	18140859	3L_18140859_SNP [dm3] 3L_18147759_SNP [dm6]	C	T	3.503e^-4	1	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	8438834	2R_8438834_SNP [dm3] 2R_12551329_SNP [dm6]	G	A	3.508e^-4	1	INTRON fra
3L	13988703	3L_13988703_SNP [dm3] 3L_13995603_SNP [dm6]	C	T	3.525e^-4	1	SYNONYMOUS_CODING 26-29-p	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	8982995	2L_8982995_SNP [dm3] 2L_8982995_SNP [dm6]	A	G	3.553e^-4	1	INTRON CG13101
X	16765549	X_16765549_SNP [dm3] X_16871516_SNP [dm6]	G	C	3.561e^-4	1	INTRON CG13003
2L	8343906	2L_8343906_SNP [dm3] 2L_8343906_SNP [dm6]	T	C	3.567e^-4	1	INTRON CG14273 EXON CR45371
3R	20674100	3R_20674100_SNP [dm3] 3R_24848378_SNP [dm6]	C	T	3.567e^-4	1	SYNONYMOUS_CODING Esp	TF binding site mE1_TFBS_chinmo
2L	18452024	2L_18452024_SNP [dm3] 2L_18452024_SNP [dm6]	G	A	3.574e^-4	1	SYNONYMOUS_CODING bsf	TF binding site mE1_TFBS_cad
2L	20899565	2L_20899565_SNP [dm3] 2L_20899565_SNP [dm6]	A	G	3.576e^-4	1	INTRON sky & 1 other
2R	12799626	2R_12799626_SNP [dm3] 2R_16912121_SNP [dm6]	T	C	3.616e^-4	1	INTERGENIC
3L	9648727	3L_9648727_SNP [dm3] 3L_9655627_SNP [dm6]	A	G	3.625e^-4	1	INTRON fry & 1 other
3L	10758342	3L_10758342_SNP [dm3] 3L_10765242_SNP [dm6]	G	A	3.637e^-4	1	INTERGENIC
2R	6460935	2R_6460935_SNP [dm3] 2R_10573430_SNP [dm6]	A	T	3.643e^-4	1	INTRON psq
2L	5097494	2L_5097494_INS [dm3] 2L_5097494_INS [dm6]	A	ACA	3.648e^-4	1	INTRON CG4230	TF binding site BDTNP1_TFBS_dl
2R	6326537	2R_6326537_SNP [dm3] 2R_10439032_SNP [dm6]	A	T	3.654e^-4	1	UPSTREAM Galphao INTRON Galphao	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	17841821	3R_17841821_SNP [dm3] 3R_22016099_SNP [dm6]	A	G	3.665e^-4	1	UTR_3_PRIME CG6332 DOWNSTREAM CG6439	TF binding site mE1_TFBS_cad
3L	13705264	3L_13705264_SNP [dm3] 3L_13712164_SNP [dm6]	A	G	3.669e^-4	1	INTRON bru-3
3R	25361696	3R_25361696_SNP [dm3] 3R_29535974_SNP [dm6]	A	G	3.703e^-4	1	DOWNSTREAM CR43613 INTERGENIC
3L	8012273	3L_8012273_SNP [dm3] 3L_8019173_SNP [dm6]	A	G	3.706e^-4	1	INTRON nmo
3R	2132909	3R_2132909_SNP [dm3] 3R_6307187_SNP [dm6]	A	T	3.706e^-4	1	UTR_3_PRIME CG31556 DOWNSTREAM Osi16	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9411905	3L_9411905_SNP [dm3] 3L_9418805_SNP [dm6]	C	T	3.719e^-4	1	INTRON CG3967	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	9411907	3L_9411907_SNP [dm3] 3L_9418807_SNP [dm6]	T	C	3.719e^-4	1	INTRON CG3967	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	9411916	3L_9411916_SNP [dm3] 3L_9418816_SNP [dm6]	G	T	3.719e^-4	1	INTRON CG3967	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	20060201	2L_20060201_DEL [dm3] 2L_20060201_DEL [dm6]	TGGG	T	3.737e^-4	1		TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	20363002	3R_20363002_SNP [dm3] 3R_24537280_SNP [dm6]	G	A	3.740e^-4	1	SPLICE_SITE_REGION CG5789 DOWNSTREAM ana1 INTRON CG5789	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	11132211	3R_11132211_SNP [dm3] 3R_15306489_SNP [dm6]	A	G	3.746e^-4	1	SYNONYMOUS_CODING Tm1 DOWNSTREAM Tm1 INTRON Tm1	TF binding site BDTNP1_TFBS_sna
3L	1634432	3L_1634432_SNP [dm3] 3L_1634432_SNP [dm6]	T	C	3.749e^-4	1	INTRON nSyb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5184930	2L_5184930_SNP [dm3] 2L_5184930_SNP [dm6]	G	A	3.764e^-4	1	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16969672	2L_16969672_SNP [dm3] 2L_16969672_SNP [dm6]	A	G	3.769e^-4	1	INTERGENIC
2R	6660540	2R_6660540_SNP [dm3] 2R_10773035_SNP [dm6]	A	C	3.773e^-4	1	INTRON CG33144
3R	26156431	3R_26156431_SNP [dm3] 3R_30330709_SNP [dm6]	T	A	3.781e^-4	1	INTRON hdc
2L	382065	2L_382065_DEL [dm3] 2L_382065_DEL [dm6]	TG	T	3.781e^-4	1	INTRON al	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	20464862	3R_20464862_SNP [dm3] 3R_24639140_SNP [dm6]	T	C	3.802e^-4	1	INTRON puf
3L	9302402	3L_9302402_SNP [dm3] 3L_9309302_SNP [dm6]	A	T	3.835e^-4	1	INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3L	9302403	3L_9302403_SNP [dm3] 3L_9309303_SNP [dm6]	T	G	3.835e^-4	1	INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
X	19734680	X_19734680_SNP [dm3] X_19840647_SNP [dm6]	C	T	3.853e^-4	1	INTRON pico	TF binding site mE1_TFBS_HSA
3R	24374690	3R_24374690_INS [dm3] 3R_28548968_INS [dm6]	A	AA	3.856e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2872592	2L_2872592_SNP [dm3] 2L_2872592_SNP [dm6]	A	G	3.859e^-4	1	INTRON CG31694	TF binding site BDTNP1_TFBS_twi
2R	4931526	2R_4931526_SNP [dm3] 2R_9044021_SNP [dm6]	C	T	3.860e^-4	1	SYNONYMOUS_CODING PPO2 DOWNSTREAM CG13743	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	904607	3L_904607_SNP [dm3] 3L_904607_SNP [dm6]	T	A	3.865e^-4	1	DOWNSTREAM CG13905 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	14074328	3L_14074328_SNP [dm3] 3L_14081228_SNP [dm6]	T	C	3.895e^-4	1	SYNONYMOUS_CODING btl	TF binding site mE1_TFBS_sens
2R	13383307	2R_13383307_SNP [dm3] 2R_17495802_SNP [dm6]	C	T	3.903e^-4	1	SYNONYMOUS_CODING CG30103	TF binding site mE1_TFBS_cad
2L	17064741	2L_17064741_SNP [dm3] 2L_17064741_SNP [dm6]	A	T	3.915e^-4	1	INTERGENIC
3R	20464866	3R_20464866_SNP [dm3] 3R_24639144_SNP [dm6]	G	A	3.927e^-4	1	INTRON puf
2L	6950787	2L_6950787_SNP [dm3] 2L_6950787_SNP [dm6]	T	C	3.943e^-4	1	SYNONYMOUS_CODING SA UPSTREAM Gas41	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	17133095	2L_17133095_SNP [dm3] 2L_17133095_SNP [dm6]	T	A	3.952e^-4	1	INTRON beat-IIIa & 1 other
3R	25006160	3R_25006160_SNP [dm3] 3R_29180438_SNP [dm6]	T	A	3.955e^-4	1	INTRON CG14509
3L	1419673	3L_1419673_SNP [dm3] 3L_1419673_SNP [dm6]	T	A	3.992e^-4	1	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	6007458	X_6007458_SNP [dm3] X_6113425_SNP [dm6]	A	G	3.997e^-4	1	SYNONYMOUS_CODING Ca-alpha1T	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3456088	2R_3456088_SNP [dm3] 2R_7568583_SNP [dm6]	A	G	4.012e^-4	1	INTRON Vps13
2R	15872770	2R_15872770_SNP [dm3] 2R_19985265_SNP [dm6]	T	C	4.026e^-4	1	DOWNSTREAM CG8654 INTERGENIC
3L	6318993	3L_6318993_SNP [dm3] 3L_6325893_SNP [dm6]	G	A	4.027e^-4	1	SYNONYMOUS_CODING Or65b
3L	6319096	3L_6319096_SNP [dm3] 3L_6325996_SNP [dm6]	T	A	4.027e^-4	1	SPLICE_SITE_REGION Or65b INTRON Or65b
2R	6735949	2R_6735949_SNP [dm3] 2R_10848444_SNP [dm6]	A	G	4.046e^-4	1	INTRON CG30015	TF binding site mE1_TFBS_cad
2L	17100910	2L_17100910_SNP [dm3] 2L_17100910_SNP [dm6]	G	A	4.075e^-4	1	INTERGENIC
2L	14960462	2L_14960462_SNP [dm3] 2L_14960462_SNP [dm6]	A	G	4.087e^-4	1	INTRON CG42313
3L	15320646	3L_15320646_SNP [dm3] 3L_15327546_SNP [dm6]	C	T	4.088e^-4	1	INTERGENIC
2R	13373072	2R_13373072_SNP [dm3] 2R_17485567_SNP [dm6]	T	G	4.094e^-4	1	UTR_5_PRIME CG43110 INTRON NT5E-2
X	19745445	X_19745445_SNP [dm3] X_19851412_SNP [dm6]	C	T	4.115e^-4	1	UTR_5_PRIME pico UPSTREAM Nup205	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9235151	3L_9235151_SNP [dm3] 3L_9242051_SNP [dm6]	A	G	4.116e^-4	1	INTERGENIC
2R	6675976	2R_6675976_SNP [dm3] 2R_10788471_SNP [dm6]	T	A	4.129e^-4	1	INTRON CG33144
2L	6951031	2L_6951031_SNP [dm3] 2L_6951031_SNP [dm6]	C	G	4.143e^-4	1	UPSTREAM Gas41 INTRON SA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	8438856	2R_8438856_SNP [dm3] 2R_12551351_SNP [dm6]	G	C	4.161e^-4	1	INTRON fra
2R	19281746	2R_19281746_SNP [dm3] 2R_23394223_SNP [dm6]	A	T	4.168e^-4	1	INTRON CG3530	TF binding site mE1_TFBS_chinmo
2L	20474358	2L_20474358_DEL [dm3] 2L_20474358_DEL [dm6]	ACA	T	4.189e^-4	1	UPSTREAM CG43233 INTRON CR44980
2L	20474362	2L_20474362_SNP [dm3] 2L_20474362_SNP [dm6]	T	G	4.189e^-4	1	UPSTREAM CG43233 INTRON CR44980
2R	8872037	2R_8872037_SNP [dm3] 2R_12984532_SNP [dm6]	A	T	4.207e^-4	1	UPSTREAM CR44339 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10782134	2L_10782134_SNP [dm3] 2L_10782134_SNP [dm6]	G	A	4.213e^-4	1	INTRON CG31869
3R	14876913	3R_14876913_SNP [dm3] 3R_19051191_SNP [dm6]	A	G	4.223e^-4	1	INTRON cdi
2L	7006384	2L_7006384_SNP [dm3] 2L_7006384_SNP [dm6]	C	A	4.234e^-4	1	INTRON uif	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	9235012	3L_9235012_SNP [dm3] 3L_9241912_SNP [dm6]	C	T	4.235e^-4	1	INTERGENIC
3L	13368691	3L_13368691_SNP [dm3] 3L_13375591_SNP [dm6]	A	G	4.237e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	11036550	3R_11036550_SNP [dm3] 3R_15210828_SNP [dm6]	C	T	4.241e^-4	1	SYNONYMOUS_CODING CG4203 DOWNSTREAM CG6654	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	14455342	2R_14455342_SNP [dm3] 2R_18567837_SNP [dm6]	G	T	4.249e^-4	1	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	22409418	3R_22409418_SNP [dm3] 3R_26583696_SNP [dm6]	T	C	4.273e^-4	1	DOWNSTREAM scrib INTRON scrib
2R	6676222	2R_6676222_SNP [dm3] 2R_10788717_SNP [dm6]	A	G	4.274e^-4	1	INTRON CG33144
2R	6676295	2R_6676295_SNP [dm3] 2R_10788790_SNP [dm6]	C	T	4.274e^-4	1	INTRON CG33144
3L	6691372	3L_6691372_SNP [dm3] 3L_6698272_SNP [dm6]	G	T	4.281e^-4	1	INTRON SP1173
3L	5791042	3L_5791042_SNP [dm3] 3L_5797942_SNP [dm6]	A	T	4.291e^-4	1	UTR_3_PRIME S6k	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	14527103	X_14527103_DEL [dm3] X_14633070_DEL [dm6]	CCCC	T	4.322e^-4	1	INTRON NetA	TF binding site mE1_TFBS_HSA
2R	13380407	2R_13380407_SNP [dm3] 2R_17492902_SNP [dm6]	C	T	4.324e^-4	1	SYNONYMOUS_CODING NT5E-2 UPSTREAM CG30103	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	13381158	2R_13381158_SNP [dm3] 2R_17493653_SNP [dm6]	G	T	4.324e^-4	1	UPSTREAM CG30103 DOWNSTREAM NT5E-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
2R	13381513	2R_13381513_SNP [dm3] 2R_17494008_SNP [dm6]	C	G	4.324e^-4	1	DOWNSTREAM NT5E-2 INTRON CG30103	TF binding site mE1_TFBS_HSA
2R	13381524	2R_13381524_SNP [dm3] 2R_17494019_SNP [dm6]	T	A	4.324e^-4	1	DOWNSTREAM NT5E-2 INTRON CG30103	TF binding site mE1_TFBS_HSA
2R	13381847	2R_13381847_SNP [dm3] 2R_17494342_SNP [dm6]	T	A	4.324e^-4	1	SYNONYMOUS_CODING CG30103
2R	13381925	2R_13381925_SNP [dm3] 2R_17494420_SNP [dm6]	C	T	4.324e^-4	1	SYNONYMOUS_CODING CG30103
2R	13382908	2R_13382908_SNP [dm3] 2R_17495403_SNP [dm6]	G	C	4.324e^-4	1	NON_SYNONYMOUS_CODING CG30103	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13383776	2R_13383776_SNP [dm3] 2R_17496271_SNP [dm6]	A	T	4.324e^-4	1	DOWNSTREAM CG30103 INTERGENIC
2R	13384238	2R_13384238_SNP [dm3] 2R_17496733_SNP [dm6]	G	T	4.324e^-4	1	DOWNSTREAM CG30103 INTERGENIC
2R	13704537	2R_13704537_SNP [dm3] 2R_17817032_SNP [dm6]	T	C	4.329e^-4	1	INTRON grh	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	6919984	3L_6919984_SNP [dm3] 3L_6926884_SNP [dm6]	T	A	4.369e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	12355407	2R_12355407_SNP [dm3] 2R_16467902_SNP [dm6]	G	T	4.390e^-4	1	UPSTREAM CheB53b DOWNSTREAM CheB53a INTERGENIC
3L	8673546	3L_8673546_SNP [dm3] 3L_8680446_SNP [dm6]	G	A	4.413e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	5277180	3L_5277180_DEL [dm3] 3L_5284080_DEL [dm6]	AA	T	4.422e^-4	1	INTERGENIC
2L	12760060	2L_12760060_SNP [dm3] 2L_12760060_SNP [dm6]	T	A	4.447e^-4	1	DOWNSTREAM CG15483 INTERGENIC
3R	13748101	3R_13748101_SNP [dm3] 3R_17922379_SNP [dm6]	G	T	4.456e^-4	1	INTRON cpo
2L	13935290	2L_13935290_SNP [dm3] 2L_13935290_SNP [dm6]	T	G	4.479e^-4	1	UPSTREAM CG16885 INTRON Ance-3
3L	13255565	3L_13255565_SNP [dm3] 3L_13262465_SNP [dm6]	C	T	4.494e^-4	1	INTRON caps
2R	18624251	2R_18624251_SNP [dm3] 2R_22736746_SNP [dm6]	A	G	4.522e^-4	1	SYNONYMOUS_CODING jbug
3R	25409304	3R_25409304_SNP [dm3] 3R_29583582_SNP [dm6]	G	A	4.524e^-4	1	INTERGENIC
X	2502433	X_2502433_SNP [dm3] X_2608400_SNP [dm6]	C	T	4.569e^-4	1	SYNONYMOUS_CODING Bzd DOWNSTREAM CG8636	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	13293512	3L_13293512_SNP [dm3] 3L_13300412_SNP [dm6]	C	T	4.574e^-4	1	UPSTREAM CG43147 INTERGENIC
3L	13705198	3L_13705198_SNP [dm3] 3L_13712098_SNP [dm6]	G	C	4.584e^-4	1	INTRON bru-3
3L	9418006	3L_9418006_SNP [dm3] 3L_9424906_SNP [dm6]	G	A	4.606e^-4	1	DOWNSTREAM aay INTRON CG3967	TF binding site mE1_TFBS_cad
2L	2882522	2L_2882522_SNP [dm3] 2L_2882522_SNP [dm6]	G	A	4.621e^-4	1	SYNONYMOUS_CODING NTPase INTRON NTPase	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	17087295	3R_17087295_SNP [dm3] 3R_21261573_SNP [dm6]	C	T	4.638e^-4	1	INTRON ETHR
X	21916350	X_21916350_SNP [dm3] X_22514514_SNP [dm6]	G	C	4.654e^-4	1	UPSTREAM CG17600 DOWNSTREAM CR43962 EXON CR43962
3R	22497749	3R_22497749_DEL [dm3] 3R_26672027_DEL [dm6]	CAAAATG	C	4.660e^-4	1	INTRON beat-VII	TF binding site BDTNP1_TFBS_twi
3L	9512443	3L_9512443_SNP [dm3] 3L_9519343_SNP [dm6]	G	A	4.665e^-4	1	INTRON CG33700
X	18731982	X_18731982_SNP [dm3] X_18837949_SNP [dm6]	G	C	4.702e^-4	1	INTRON Pvf1
2R	8564808	2R_8564808_INS [dm3] 2R_12677303_INS [dm6]	T	TTTTTGTTTCATTTCTCAAA...	4.717e^-4	1	UPSTREAM CG42708 INTRON CG42708
3L	4159537	3L_4159537_SNP [dm3] 3L_4159537_SNP [dm6]	G	A	4.753e^-4	1	INTRON nab	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	21825644	3R_21825644_SNP [dm3] 3R_25999922_SNP [dm6]	G	A	4.765e^-4	1	UTR_5_PRIME E_spl_mgamma-HLH	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	7907015	3L_7907015_SNP [dm3] 3L_7913915_SNP [dm6]	T	C	4.767e^-4	1	SYNONYMOUS_CODING CG8111 DOWNSTREAM CG8281	TF binding site mE1_TFBS_chinmo
2R	6676293	2R_6676293_SNP [dm3] 2R_10788788_SNP [dm6]	C	T	4.769e^-4	1	INTRON CG33144
3L	6320588	3L_6320588_SNP [dm3] 3L_6327488_SNP [dm6]	G	T	4.797e^-4	1	UPSTREAM Or65c DOWNSTREAM Or65b INTERGENIC
X	9667042	X_9667042_SNP [dm3] X_9773009_SNP [dm6]	G	A	4.803e^-4	1	INTERGENIC
2R	9188662	2R_9188662_SNP [dm3] 2R_13301157_SNP [dm6]	C	T	4.804e^-4	1	SYNONYMOUS_CODING CG17047
2R	19535553	2R_19535553_SNP [dm3] 2R_23648030_SNP [dm6]	T	G	4.805e^-4	1	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	10193345	3L_10193345_SNP [dm3] 3L_10200245_SNP [dm6]	G	C	4.824e^-4	1	INTRON ect
3L	9412062	3L_9412062_SNP [dm3] 3L_9418962_SNP [dm6]	G	A	4.824e^-4	1	SYNONYMOUS_CODING CG3967	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3L	9149147	3L_9149147_SNP [dm3] 3L_9156047_SNP [dm6]	T	C	4.832e^-4	1	INTRON Rdl
2R	15489935	2R_15489935_SNP [dm3] 2R_19602430_SNP [dm6]	A	G	4.847e^-4	1	UPSTREAM CR44473 INTRON sm
3R	20464835	3R_20464835_SNP [dm3] 3R_24639113_SNP [dm6]	C	T	4.853e^-4	1	INTRON puf
2R	6660614	2R_6660614_SNP [dm3] 2R_10773109_SNP [dm6]	A	G	4.859e^-4	1	INTRON CG33144
2R	18385922	2R_18385922_SNP [dm3] 2R_22498417_SNP [dm6]	C	T	4.868e^-4	1	SYNONYMOUS_CODING px	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20782368	3R_20782368_SNP [dm3] 3R_24956646_SNP [dm6]	C	T	4.873e^-4	1	INTERGENIC
3L	10438233	3L_10438233_SNP [dm3] 3L_10445133_SNP [dm6]	T	A	4.882e^-4	1	INTERGENIC
3L	15321669	3L_15321669_SNP [dm3] 3L_15328569_SNP [dm6]	C	T	4.886e^-4	1	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	15321670	3L_15321670_SNP [dm3] 3L_15328570_SNP [dm6]	T	C	4.886e^-4	1	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	13381080	2R_13381080_SNP [dm3] 2R_17493575_SNP [dm6]	A	T	4.887e^-4	1	UPSTREAM CG30103 DOWNSTREAM NT5E-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
2R	13381095	2R_13381095_SNP [dm3] 2R_17493590_SNP [dm6]	T	A	4.887e^-4	1	UPSTREAM CG30103 DOWNSTREAM NT5E-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
2R	13381114	2R_13381114_SNP [dm3] 2R_17493609_SNP [dm6]	A	T	4.887e^-4	1	UPSTREAM CG30103 DOWNSTREAM NT5E-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
2R	13381117	2R_13381117_SNP [dm3] 2R_17493612_SNP [dm6]	C	A	4.887e^-4	1	UPSTREAM CG30103 DOWNSTREAM NT5E-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
X	4117651	X_4117651_SNP [dm3] X_4223618_SNP [dm6]	C	T	4.901e^-4	1	DOWNSTREAM CG15570 INTERGENIC
3L	13978557	3L_13978557_INS [dm3] 3L_13985457_INS [dm6]	G	GTGGCTGCAGTTGCAATTGC...	4.902e^-4	1	CODON_INSERTION CG17364	TF binding site mE1_TFBS_cad
3R	25134623	3R_25134623_SNP [dm3] 3R_29308901_SNP [dm6]	C	T	4.919e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	9423488	3R_9423488_SNP [dm3] 3R_13597766_SNP [dm6]	A	C	4.925e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
3R	25726691	3R_25726691_SNP [dm3] 3R_29900969_SNP [dm6]	A	G	4.942e^-4	1	INTRON CG31038
3L	13947385	3L_13947385_INS [dm3] 3L_13954285_INS [dm6]	A	ACATA	4.968e^-4	1	INTRON CG32137
2L	10890851	2L_10890851_SNP [dm3] 2L_10890851_SNP [dm6]	T	C	4.977e^-4	1	INTERGENIC
X	8157739	X_8157739_SNP [dm3] X_8263706_SNP [dm6]	G	C	4.985e^-4	1	INTRON CG1632
2L	17254963	2L_17254963_SNP [dm3] 2L_17254963_SNP [dm6]	C	A	4.986e^-4	1	INTRON beat-IIIc
3R	17841204	3R_17841204_SNP [dm3] 3R_22015482_SNP [dm6]	A	G	4.997e^-4	1	SPLICE_SITE_REGION CG6332 DOWNSTREAM Eip93F & 1 other INTRON CG6332	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	7696917	X_7696917_SNP [dm3] X_7802884_SNP [dm6]	G	A	5.011e^-4	1	INTERGENIC
2L	19879291	2L_19879291_SNP [dm3] 2L_19879291_SNP [dm6]	T	C	5.012e^-4	1	INTRON sick
X	18732115	X_18732115_SNP [dm3] X_18838082_SNP [dm6]	A	G	5.016e^-4	1	NON_SYNONYMOUS_CODING Pvf1 SPLICE_SITE_REGION Pvf1 INTRON Pvf1
2L	1290748	2L_1290748_SNP [dm3] 2L_1290748_SNP [dm6]	C	A	5.043e^-4	1	INTRON robo3
3L	11748386	3L_11748386_SNP [dm3] 3L_11755286_SNP [dm6]	T	C	5.071e^-4	1	INTRON CG6024
2R	10543893	2R_10543893_SNP [dm3] 2R_14656388_SNP [dm6]	C	A	5.093e^-4	1	DOWNSTREAM Adgf-E INTERGENIC
2R	19652867	2R_19652867_SNP [dm3] 2R_23765344_SNP [dm6]	C	T	5.114e^-4	1	INTRON CG9850
2R	13355666	2R_13355666_SNP [dm3] 2R_17468161_SNP [dm6]	C	T	5.115e^-4	1	SYNONYMOUS_CODING Tes	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19239553	2R_19239553_SNP [dm3] 2R_23352030_SNP [dm6]	C	T	5.136e^-4	1	UTR_3_PRIME CG34210	TF binding site BDTNP1_TFBS_prd
3L	3720981	3L_3720981_SNP [dm3] 3L_3720981_SNP [dm6]	A	G	5.137e^-4	1	INTRON CG32264
2R	3843660	2R_3843660_SNP [dm3] 2R_7956155_SNP [dm6]	C	T	5.145e^-4	1	UTR_5_PRIME CG2906 UPSTREAM CG14764	TF binding site BDTNP1_TFBS_dl
2L	20077217	2L_20077217_SNP [dm3] 2L_20077217_SNP [dm6]	T	G	5.159e^-4	1	NON_SYNONYMOUS_CODING neb	TF binding site mE1_TFBS_chinmo
3R	21948778	3R_21948778_SNP [dm3] 3R_26123056_SNP [dm6]	T	A	5.194e^-4	1	INTRON CG31324
2R	3847451	2R_3847451_SNP [dm3] 2R_7959946_SNP [dm6]	C	T	5.199e^-4	1	UTR_5_PRIME CG2915 DOWNSTREAM Sep5 INTRON CG2915	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
3L	8664183	3L_8664183_SNP [dm3] 3L_8671083_SNP [dm6]	G	A	5.217e^-4	1	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	10535577	2R_10535577_SNP [dm3] 2R_14648072_SNP [dm6]	C	A	5.221e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	23906843	3L_23906843_SNP [dm3] 3L_23913743_SNP [dm6]	T	C	5.236e^-4	1	INTRON CG40470
3L	12883165	3L_12883165_SNP [dm3] 3L_12890065_SNP [dm6]	T	G	5.255e^-4	1	START_GAINED CG43894 UTR_5_PRIME CG43894 UPSTREAM CG43894 & 1 other DOWNSTREAM CG14120
2L	6603886	2L_6603886_SNP [dm3] 2L_6603886_SNP [dm6]	C	A	5.257e^-4	1	INTERGENIC
2L	20478452	2L_20478452_SNP [dm3] 2L_20478452_SNP [dm6]	T	C	5.296e^-4	1	INTRON CR44980 & 1 other
3R	17087466	3R_17087466_SNP [dm3] 3R_21261744_SNP [dm6]	C	T	5.305e^-4	1	INTRON ETHR	TF binding site mE1_TFBS_cad
2L	6008296	2L_6008296_SNP [dm3] 2L_6008296_SNP [dm6]	A	G	5.305e^-4	1	SYNONYMOUS_CODING CG9098
X	6007451	X_6007451_SNP [dm3] X_6113418_SNP [dm6]	G	A	5.307e^-4	1	NON_SYNONYMOUS_CODING Ca-alpha1T	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17749543	3R_17749543_SNP [dm3] 3R_21923821_SNP [dm6]	T	C	5.320e^-4	1	INTERGENIC
2R	10669306	2R_10669306_SNP [dm3] 2R_14781801_SNP [dm6]	T	C	5.337e^-4	1	INTRON kn
2L	20068882	2L_20068882_SNP [dm3] 2L_20068882_SNP [dm6]	T	A	5.341e^-4	1	INTRON bwa EXON CR44907
2L	20075563	2L_20075563_SNP [dm3] 2L_20075563_SNP [dm6]	A	T	5.341e^-4	1	UPSTREAM neb & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	3601741	3R_3601741_SNP [dm3] 3R_7776019_SNP [dm6]	G	T	5.365e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
3R	21946954	3R_21946954_SNP [dm3] 3R_26121232_SNP [dm6]	C	A	5.368e^-4	1	INTRON CG31324
3R	15245546	3R_15245546_SNP [dm3] 3R_19419824_SNP [dm6]	G	C	5.372e^-4	1	INTRON CG31221
2L	10410285	2L_10410285_SNP [dm3] 2L_10410285_SNP [dm6]	T	C	5.385e^-4	1	SYNONYMOUS_CODING RpS27A DOWNSTREAM CG5355 & 1 other	TF binding site mE1_TFBS_HSA
2R	13864531	2R_13864531_SNP [dm3] 2R_17977026_SNP [dm6]	T	A	5.387e^-4	1	INTRON dpr13
2R	13381093	2R_13381093_SNP [dm3] 2R_17493588_SNP [dm6]	C	A	5.399e^-4	1	UPSTREAM CG30103 DOWNSTREAM NT5E-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
3L	5017730	3L_5017730_SNP [dm3] 3L_5017730_SNP [dm6]	G	T	5.443e^-4	1	INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
2L	4949555	2L_4949555_SNP [dm3] 2L_4949555_SNP [dm6]	G	A	5.445e^-4	1	NON_SYNONYMOUS_CODING jet DOWNSTREAM Jon25Biii	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	20674827	3R_20674827_SNP [dm3] 3R_24849105_SNP [dm6]	C	T	5.448e^-4	1	SYNONYMOUS_CODING Esp	TF binding site mE1_TFBS_sens
2L	16358573	2L_16358573_SNP [dm3] 2L_16358573_SNP [dm6]	T	A	5.463e^-4	1	INTERGENIC
3R	21948812	3R_21948812_SNP [dm3] 3R_26123090_SNP [dm6]	A	G	5.512e^-4	1	INTRON CG31324
3R	17218855	3R_17218855_SNP [dm3] 3R_21393133_SNP [dm6]	T	A	5.513e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	18000756	2L_18000756_SNP [dm3] 2L_18000756_SNP [dm6]	A	C	5.551e^-4	1	INTERGENIC
2R	12203496	2R_12203496_SNP [dm3] 2R_16315991_SNP [dm6]	T	C	5.588e^-4	1	DOWNSTREAM CG8060 INTRON Nox	TF binding site mE1_TFBS_cad
2R	12203505	2R_12203505_SNP [dm3] 2R_16316000_SNP [dm6]	C	T	5.588e^-4	1	DOWNSTREAM CG8060 INTRON Nox	TF binding site mE1_TFBS_cad
3R	20767287	3R_20767287_SNP [dm3] 3R_24941565_SNP [dm6]	T	C	5.608e^-4	1	SYNONYMOUS_CODING ssh	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13770012	2R_13770012_SNP [dm3] 2R_17882507_SNP [dm6]	T	C	5.624e^-4	1	UPSTREAM CG30110 INTRON Elk
2L	2063611	2L_2063611_SNP [dm3] 2L_2063611_SNP [dm6]	G	C	5.628e^-4	1	INTRON dpr3
2R	12356144	2R_12356144_SNP [dm3] 2R_16468639_SNP [dm6]	G	A	5.638e^-4	1	SYNONYMOUS_CODING CheB53b
3R	20464840	3R_20464840_SNP [dm3] 3R_24639118_SNP [dm6]	C	T	5.644e^-4	1	INTRON puf
3R	20464845	3R_20464845_SNP [dm3] 3R_24639123_SNP [dm6]	T	A	5.644e^-4	1	INTRON puf
2L	13239966	2L_13239966_SNP [dm3] 2L_13239966_SNP [dm6]	A	G	5.713e^-4	1	UPSTREAM CG5945 DOWNSTREAM CG5867 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13389331	2R_13389331_SNP [dm3] 2R_17501826_SNP [dm6]	G	A	5.733e^-4	1	UPSTREAM CG43164 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13389407	2R_13389407_INS [dm3] 2R_17501902_INS [dm6]	C	CATAAAAAGTTTC...	5.733e^-4	1	UPSTREAM CG43164 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13389409	2R_13389409_SNP [dm3] 2R_17501904_SNP [dm6]	C	T	5.733e^-4	1	UPSTREAM CG43164 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13389419	2R_13389419_SNP [dm3] 2R_17501914_SNP [dm6]	G	C	5.733e^-4	1	UPSTREAM CG43164 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13389434	2R_13389434_SNP [dm3] 2R_17501929_SNP [dm6]	A	T	5.733e^-4	1	UPSTREAM CG43164 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13389435	2R_13389435_SNP [dm3] 2R_17501930_SNP [dm6]	A	G	5.733e^-4	1	UPSTREAM CG43164 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13389455	2R_13389455_DEL [dm3] 2R_17501950_DEL [dm6]	CGA	C	5.733e^-4	1	UPSTREAM CG43164 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13389461	2R_13389461_SNP [dm3] 2R_17501956_SNP [dm6]	T	A	5.733e^-4	1	UPSTREAM CG43164 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13389474	2R_13389474_SNP [dm3] 2R_17501969_SNP [dm6]	T	A	5.733e^-4	1	UPSTREAM CG43164 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13389475	2R_13389475_SNP [dm3] 2R_17501970_SNP [dm6]	G	T	5.733e^-4	1	UPSTREAM CG43164 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13389477	2R_13389477_SNP [dm3] 2R_17501972_SNP [dm6]	A	C	5.733e^-4	1	UPSTREAM CG43164 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	6735815	2R_6735815_DEL [dm3] 2R_10848310_DEL [dm6]	AAA	G	5.749e^-4	1	INTRON CG30015
2L	14009391	2L_14009391_SNP [dm3] 2L_14009391_SNP [dm6]	A	G	5.753e^-4	1	DOWNSTREAM CG42692 INTERGENIC
2L	4876855	2L_4876855_SNP [dm3] 2L_4876855_SNP [dm6]	T	A	5.759e^-4	1	DOWNSTREAM Cf2 & 1 other INTERGENIC
3R	26134024	3R_26134024_SNP [dm3] 3R_30308302_SNP [dm6]	A	G	5.761e^-4	1	INTRON hdc
2R	2967107	2R_2967107_DEL [dm3] 2R_7079602_DEL [dm6]	AA	A	5.773e^-4	1	INTERGENIC
3L	13083851	3L_13083851_SNP [dm3] 3L_13090751_SNP [dm6]	G	C	5.797e^-4	1	UPSTREAM CG11251 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	6563024	2R_6563024_SNP [dm3] 2R_10675519_SNP [dm6]	G	A	5.823e^-4	1	INTRON stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	1252274	3L_1252274_SNP [dm3] 3L_1252274_SNP [dm6]	A	G	5.824e^-4	1	SYNONYMOUS_CODING CG9130 UTR_5_PRIME CG9133 DOWNSTREAM CG9129	TF binding site mE1_TFBS_cad
3R	26362219	3R_26362219_SNP [dm3] 3R_30536497_SNP [dm6]	T	A	5.844e^-4	1	INTRON tmod
3R	26602243	3R_26602243_SNP [dm3] 3R_30776521_SNP [dm6]	A	C	5.898e^-4	1	INTRON zfh1
3L	8065226	3L_8065226_SNP [dm3] 3L_8072126_SNP [dm6]	G	C	5.904e^-4	1	SYNONYMOUS_CODING Ect4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15902795	3L_15902795_SNP [dm3] 3L_15909695_SNP [dm6]	C	T	5.906e^-4	1	INTRON sff
2L	17062058	2L_17062058_SNP [dm3] 2L_17062058_SNP [dm6]	C	T	5.933e^-4	1	INTERGENIC
2R	8370663	2R_8370663_SNP [dm3] 2R_12483158_SNP [dm6]	A	C	5.944e^-4	1	INTRON Dh44-R2
3L	8209038	3L_8209038_SNP [dm3] 3L_8215938_SNP [dm6]	C	G	5.969e^-4	1	UTR_3_PRIME CG8012
2L	380569	2L_380569_SNP [dm3] 2L_380569_SNP [dm6]	G	A	5.969e^-4	1	INTRON al	TF binding site mE1_TFBS_h mE1_TFBS_HSA
X	9754944	X_9754944_SNP [dm3] X_9860911_SNP [dm6]	C	A	6.008e^-4	1	INTERGENIC
2L	20059867	2L_20059867_SNP [dm3] 2L_20059867_SNP [dm6]	T	C	6.018e^-4	1	SYNONYMOUS_CODING barr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	20060142	2L_20060142_SNP [dm3] 2L_20060142_SNP [dm6]	C	T	6.018e^-4	1	NON_SYNONYMOUS_CODING barr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	20063146	2L_20063146_SNP [dm3] 2L_20063146_SNP [dm6]	T	C	6.018e^-4	1	SYNONYMOUS_CODING lok	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	20070068	2L_20070068_SNP [dm3] 2L_20070068_SNP [dm6]	T	C	6.018e^-4	1	UPSTREAM CR44907 DOWNSTREAM CG10730 INTRON bwa	TF binding site mE1_TFBS_cad
2L	17317638	2L_17317638_SNP [dm3] 2L_17317638_SNP [dm6]	A	G	6.049e^-4	1	INTERGENIC
3L	15054690	3L_15054690_SNP [dm3] 3L_15061590_SNP [dm6]	T	A	6.053e^-4	1	SYNONYMOUS_CODING CG13460 DOWNSTREAM CR43684 INTRON Sytbeta
2L	20472289	2L_20472289_SNP [dm3] 2L_20472289_SNP [dm6]	C	G	6.056e^-4	1	DOWNSTREAM CG43233 INTRON CR44980
3R	15144176	3R_15144176_SNP [dm3] 3R_19318454_SNP [dm6]	T	G	6.057e^-4	1	INTRON Dl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	6735908	2R_6735908_SNP [dm3] 2R_10848403_SNP [dm6]	C	A	6.062e^-4	1	INTRON CG30015	TF binding site mE1_TFBS_cad
2L	2873604	2L_2873604_SNP [dm3] 2L_2873604_SNP [dm6]	C	G	6.065e^-4	1	INTRON CG31694	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12203519	2R_12203519_SNP [dm3] 2R_16316014_SNP [dm6]	T	C	6.086e^-4	1	DOWNSTREAM CG8060 INTRON Nox	TF binding site mE1_TFBS_cad
3L	1151762	3L_1151762_SNP [dm3] 3L_1151762_SNP [dm6]	G	C	6.099e^-4	1	INTRON bab2
2L	9198120	2L_9198120_SNP [dm3] 2L_9198120_SNP [dm6]	T	A	6.113e^-4	1	INTRON tai
2L	17827759	2L_17827759_SNP [dm3] 2L_17827759_SNP [dm6]	A	T	6.145e^-4	1	UTR_5_PRIME CadN2
3R	25139403	3R_25139403_SNP [dm3] 3R_29313681_SNP [dm6]	T	C	6.147e^-4	1	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	6327545	2R_6327545_SNP [dm3] 2R_10440040_SNP [dm6]	T	C	6.152e^-4	1	INTRON Galphao	TF binding site BDTNP1_TFBS_twi
3L	20212109	3L_20212109_SNP [dm3] 3L_20219009_SNP [dm6]	G	T	6.181e^-4	1	NON_SYNONYMOUS_CODING CG6933	TF binding site mE1_TFBS_cad
3R	13597152	3R_13597152_SNP [dm3] 3R_17771430_SNP [dm6]	G	T	6.195e^-4	1	INTRON CG43102
2R	6326716	2R_6326716_SNP [dm3] 2R_10439211_SNP [dm6]	A	G	6.203e^-4	1	UPSTREAM Galphao INTRON Galphao	TF binding site BDTNP1_TFBS_dl
X	5475671	X_5475671_SNP [dm3] X_5581638_SNP [dm6]	T	G	6.208e^-4	1	INTERGENIC
2R	8529895	2R_8529895_SNP [dm3] 2R_12642390_SNP [dm6]	G	C	6.234e^-4	1	INTRON CG8785
2L	17465339	2L_17465339_SNP [dm3] 2L_17465339_SNP [dm6]	C	A	6.256e^-4	1	INTRON BicD
3R	3599253	3R_3599253_SNP [dm3] 3R_7773531_SNP [dm6]	C	G	6.263e^-4	1	INTERGENIC
2L	17854360	2L_17854360_SNP [dm3] 2L_17854360_SNP [dm6]	G	A	6.268e^-4	1	INTRON CadN2
X	3917380	X_3917380_SNP [dm3] X_4023347_SNP [dm6]	C	A	6.269e^-4	1	INTERGENIC
X	19735223	X_19735223_SNP [dm3] X_19841190_SNP [dm6]	G	A	6.284e^-4	1	INTRON pico
2R	9552637	2R_9552637_SNP [dm3] 2R_13665132_SNP [dm6]	T	C	6.310e^-4	1	UTR_5_PRIME CG13337 INTRON fas
2R	10819870	2R_10819870_INS [dm3] 2R_14932365_INS [dm6]	C	CC	6.310e^-4	1	INTRON CG10253
2L	9676868	2L_9676868_SNP [dm3] 2L_9676868_SNP [dm6]	A	G	6.323e^-4	1	INTERGENIC
3L	8606344	3L_8606344_DEL [dm3] 3L_8613244_DEL [dm6]	AT	G	6.331e^-4	1	INTRON CG6282
2L	17998375	2L_17998375_SNP [dm3] 2L_17998375_SNP [dm6]	A	G	6.331e^-4	1	INTERGENIC
2R	17945368	2R_17945368_SNP [dm3] 2R_22057863_SNP [dm6]	G	A	6.346e^-4	1	UPSTREAM CG13500 INTERGENIC	TF binding site mE1_TFBS_cad
3R	14708155	3R_14708155_SNP [dm3] 3R_18882433_SNP [dm6]	A	G	6.353e^-4	1	INTERGENIC
2R	14182654	2R_14182654_SNP [dm3] 2R_18295149_SNP [dm6]	A	G	6.357e^-4	1	SYNONYMOUS_CODING CG18536 UPSTREAM CG18537 DOWNSTREAM CG14502 INTRON sbb
X	18732046	X_18732046_SNP [dm3] X_18838013_SNP [dm6]	G	A	6.367e^-4	1	UTR_5_PRIME Pvf1 INTRON Pvf1
3R	23387081	3R_23387081_SNP [dm3] 3R_27561359_SNP [dm6]	G	A	6.371e^-4	1	UPSTREAM snmRNA:157 & 1 other DOWNSTREAM wdb INTERGENIC
2L	10630568	2L_10630568_SNP [dm3] 2L_10630568_SNP [dm6]	A	G	6.373e^-4	1	SYNONYMOUS_CODING CG7329	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3826884	X_3826884_SNP [dm3] X_3932851_SNP [dm6]	C	T	6.377e^-4	1	UTR_3_PRIME CG2938	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	19385371	2L_19385371_SNP [dm3] 2L_19385371_SNP [dm6]	T	A	6.385e^-4	1	SPLICE_SITE_REGION fon INTRON fon
2R	6259664	2R_6259664_DEL [dm3] 2R_10372159_DEL [dm6]	CGCTACATGC	G	6.408e^-4	1	INTRON CG42732	TF binding site mE1_TFBS_inv
X	16646173	X_16646173_DEL [dm3] X_16752140_DEL [dm6]	ATAATAAATCATAATAA...	G	6.430e^-4	1	UPSTREAM CG9634 DOWNSTREAM if INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn
2L	4718940	2L_4718940_SNP [dm3] 2L_4718940_SNP [dm6]	T	C	6.431e^-4	1	INTRON CG34351
3R	25795091	3R_25795091_SNP [dm3] 3R_29969369_SNP [dm6]	A	G	6.435e^-4	1	UTR_5_PRIME TkR99D
3R	25795092	3R_25795092_SNP [dm3] 3R_29969370_SNP [dm6]	G	A	6.435e^-4	1	START_GAINED TkR99D UTR_5_PRIME TkR99D
2R	7582105	2R_7582105_SNP [dm3] 2R_11694600_SNP [dm6]	A	T	6.445e^-4	1	INTRON CG13197
2R	7582115	2R_7582115_SNP [dm3] 2R_11694610_SNP [dm6]	C	G	6.445e^-4	1	INTRON CG13197
X	19994325	X_19994325_SNP [dm3] X_20100292_SNP [dm6]	G	A	6.453e^-4	1	INTERGENIC	transposable element FlyBase
2L	17036881	2L_17036881_SNP [dm3] 2L_17036881_SNP [dm6]	G	T	6.455e^-4	1	INTERGENIC
3R	14555493	3R_14555493_SNP [dm3] 3R_18729771_SNP [dm6]	C	T	6.459e^-4	1	SYNONYMOUS_CODING Cha	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	19994342	X_19994342_SNP [dm3] X_20100309_SNP [dm6]	G	T	6.477e^-4	1	INTERGENIC	transposable element FlyBase
X	19994994	X_19994994_SNP [dm3] X_20100961_SNP [dm6]	C	G	6.477e^-4	1	INTERGENIC	transposable element FlyBase
3R	27222409	3R_27222409_SNP [dm3] 3R_31396687_SNP [dm6]	G	C	6.488e^-4	1	SYNONYMOUS_CODING Gcn2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	14960241	2L_14960241_SNP [dm3] 2L_14960241_SNP [dm6]	C	A	6.508e^-4	1	INTRON CG42313
3L	9222613	3L_9222613_INS [dm3] 3L_9229513_INS [dm6]	A	AA	6.514e^-4	1	INTERGENIC
3R	18042429	3R_18042429_SNP [dm3] 3R_22216707_SNP [dm6]	T	C	6.523e^-4	1	UTR_3_PRIME Gld2 INTRON SKIP
3L	7284471	3L_7284471_SNP [dm3] 3L_7291371_SNP [dm6]	A	G	6.524e^-4	1	INTRON unc-13-4A
2R	6736563	2R_6736563_SNP [dm3] 2R_10849058_SNP [dm6]	C	T	6.527e^-4	1	SYNONYMOUS_CODING CG30015 UTR_5_PRIME CG30015	TF binding site mE1_TFBS_cad
3L	6318621	3L_6318621_DEL [dm3] 3L_6325521_DEL [dm6]	ACATTTT	A	6.534e^-4	1	UPSTREAM Or65b INTERGENIC
3L	6318653	3L_6318653_SNP [dm3] 3L_6325553_SNP [dm6]	T	A	6.534e^-4	1	UPSTREAM Or65b INTERGENIC
3L	6318694	3L_6318694_SNP [dm3] 3L_6325594_SNP [dm6]	G	A	6.534e^-4	1	UPSTREAM Or65b INTERGENIC
3L	6318750	3L_6318750_SNP [dm3] 3L_6325650_SNP [dm6]	A	C	6.534e^-4	1	SYNONYMOUS_CODING Or65b
3L	6318755	3L_6318755_SNP [dm3] 3L_6325655_SNP [dm6]	A	G	6.534e^-4	1	NON_SYNONYMOUS_CODING Or65b
3R	3599602	3R_3599602_SNP [dm3] 3R_7773880_SNP [dm6]	T	A	6.540e^-4	1	INTERGENIC
X	21092298	X_21092298_INS [dm3] X_21221271_INS [dm6]	A	AATTCCCA	6.554e^-4	1	INTRON CG32521
3L	17098403	3L_17098403_SNP [dm3] 3L_17105303_SNP [dm6]	A	G	6.591e^-4	1	INTRON Rbp6
3L	3911580	3L_3911580_SNP [dm3] 3L_3911580_SNP [dm6]	A	G	6.600e^-4	1	UTR_3_PRIME Eip63F-1 DOWNSTREAM Eip63F-1
3L	3912095	3L_3912095_SNP [dm3] 3L_3912095_SNP [dm6]	A	G	6.600e^-4	1	INTRON Eip63F-1
3L	623968	3L_623968_SNP [dm3] 3L_623968_SNP [dm6]	C	A	6.600e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	624035	3L_624035_SNP [dm3] 3L_624035_SNP [dm6]	G	T	6.600e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	16755464	X_16755464_SNP [dm3] X_16861431_SNP [dm6]	G	T	6.600e^-4	1	INTRON CG13003
X	16755475	X_16755475_SNP [dm3] X_16861442_SNP [dm6]	G	T	6.600e^-4	1	INTRON CG13003
3R	25181509	3R_25181509_SNP [dm3] 3R_29355787_SNP [dm6]	T	A	6.636e^-4	1	DOWNSTREAM CR45547 INTERGENIC
2L	4229836	2L_4229836_SNP [dm3] 2L_4229836_SNP [dm6]	G	T	6.664e^-4	1	DOWNSTREAM CR44608 INTERGENIC
3L	10823350	3L_10823350_SNP [dm3] 3L_10830250_SNP [dm6]	A	G	6.689e^-4	1	INTERGENIC
3L	5681402	3L_5681402_SNP [dm3] 3L_5688302_SNP [dm6]	G	A	6.715e^-4	1	INTRON sif
2R	7018429	2R_7018429_SNP [dm3] 2R_11130924_SNP [dm6]	C	A	6.729e^-4	1	INTERGENIC
2R	3460461	2R_3460461_SNP [dm3] 2R_7572956_SNP [dm6]	C	T	6.748e^-4	1	SPLICE_SITE_REGION Vps13 INTRON Vps13	TF binding site mE1_TFBS_inv
2L	14393222	2L_14393222_SNP [dm3] 2L_14393222_SNP [dm6]	T	C	6.748e^-4	1	INTRON elB	TF binding site mE1_TFBS_inv
3L	10146873	3L_10146873_SNP [dm3] 3L_10153773_SNP [dm6]	A	G	6.763e^-4	1	DOWNSTREAM CG8072 INTRON dpr10
3L	2836918	3L_2836918_DEL [dm3] 3L_2836918_DEL [dm6]	GGTTTTTAG	G	6.774e^-4	1	INTRON CG43444
2L	19879276	2L_19879276_SNP [dm3] 2L_19879276_SNP [dm6]	T	A	6.811e^-4	1	INTRON sick
3L	22101246	3L_22101246_SNP [dm3] 3L_22108146_SNP [dm6]	T	C	6.814e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	552528	2L_552528_SNP [dm3] 2L_552528_SNP [dm6]	T	C	6.817e^-4	1	UTR_5_PRIME Ets21C UPSTREAM Ets21C
3L	10024822	3L_10024822_SNP [dm3] 3L_10031722_SNP [dm6]	T	A	6.826e^-4	1	INTRON dpr6
3L	10024824	3L_10024824_SNP [dm3] 3L_10031724_SNP [dm6]	T	A	6.826e^-4	1	INTRON dpr6
3L	9944688	3L_9944688_SNP [dm3] 3L_9951588_SNP [dm6]	T	C	6.841e^-4	1	INTRON CG34356
2R	7792669	2R_7792669_SNP [dm3] 2R_11905164_SNP [dm6]	A	G	6.855e^-4	1	SYNONYMOUS_CODING CG13183
X	17204932	X_17204932_SNP [dm3] X_17310899_SNP [dm6]	A	G	6.865e^-4	1	INTERGENIC
2R	10819861	2R_10819861_SNP [dm3] 2R_14932356_SNP [dm6]	A	T	6.875e^-4	1	INTRON CG10253
2L	17998137	2L_17998137_SNP [dm3] 2L_17998137_SNP [dm6]	T	C	6.887e^-4	1	INTERGENIC
3L	1278235	3L_1278235_SNP [dm3] 3L_1278235_SNP [dm6]	A	T	6.897e^-4	1	INTRON CG32333
2L	17859444	2L_17859444_SNP [dm3] 2L_17859444_SNP [dm6]	G	C	6.901e^-4	1	INTRON CadN2
3L	1252292	3L_1252292_SNP [dm3] 3L_1252292_SNP [dm6]	C	A	6.911e^-4	1	SYNONYMOUS_CODING CG9130 UTR_5_PRIME CG9133 DOWNSTREAM CG9129	TF binding site mE1_TFBS_cad
3L	1252337	3L_1252337_SNP [dm3] 3L_1252337_SNP [dm6]	A	G	6.911e^-4	1	SYNONYMOUS_CODING CG9130 UTR_5_PRIME CG9133 DOWNSTREAM CG9129	TF binding site mE1_TFBS_cad
3L	1252343	3L_1252343_SNP [dm3] 3L_1252343_SNP [dm6]	C	T	6.911e^-4	1	SYNONYMOUS_CODING CG9130 UTR_5_PRIME CG9133 DOWNSTREAM CG9129	TF binding site mE1_TFBS_cad
3L	8676236	3L_8676236_SNP [dm3] 3L_8683136_SNP [dm6]	C	A	6.932e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
2R	13383049	2R_13383049_SNP [dm3] 2R_17495544_SNP [dm6]	T	C	6.953e^-4	1	SYNONYMOUS_CODING CG30103	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	19743754	X_19743754_SNP [dm3] X_19849721_SNP [dm6]	A	C	6.961e^-4	1	INTRON pico	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19743787	X_19743787_SNP [dm3] X_19849754_SNP [dm6]	A	C	6.961e^-4	1	INTRON pico	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19743793	X_19743793_SNP [dm3] X_19849760_SNP [dm6]	T	A	6.961e^-4	1	INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19743819	X_19743819_SNP [dm3] X_19849786_SNP [dm6]	T	A	6.961e^-4	1	INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27614138	3R_27614138_SNP [dm3] 3R_31788416_SNP [dm6]	G	T	6.969e^-4	1	DOWNSTREAM faf INTRON faf	TF binding site mE1_TFBS_cad
2R	18180034	2R_18180034_SNP [dm3] 2R_22292529_SNP [dm6]	A	G	6.978e^-4	1	UPSTREAM CG5819 DOWNSTREAM CR43422 INTERGENIC
2L	6951259	2L_6951259_SNP [dm3] 2L_6951259_SNP [dm6]	C	A	6.987e^-4	1	INTRON SA	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19253064	3R_19253064_SNP [dm3] 3R_23427342_SNP [dm6]	T	A	6.994e^-4	1	INTRON CG4374
3L	4155893	3L_4155893_SNP [dm3] 3L_4155893_SNP [dm6]	C	G	6.996e^-4	1	SYNONYMOUS_CODING nab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27614076	3R_27614076_SNP [dm3] 3R_31788354_SNP [dm6]	T	C	7.008e^-4	1	DOWNSTREAM faf INTRON faf	TF binding site mE1_TFBS_cad
3L	10393997	3L_10393997_SNP [dm3] 3L_10400897_SNP [dm6]	T	C	7.041e^-4	1	INTERGENIC
3L	9628506	3L_9628506_SNP [dm3] 3L_9635406_SNP [dm6]	T	C	7.065e^-4	1	INTRON fry
2R	1488468	2R_1488468_SNP [dm3] 2R_5600963_SNP [dm6]	T	A	7.071e^-4	1	INTERGENIC
2L	13263711	2L_13263711_SNP [dm3] 2L_13263711_SNP [dm6]	C	T	7.073e^-4	1	INTRON CG44085
2R	8532671	2R_8532671_SNP [dm3] 2R_12645166_SNP [dm6]	A	C	7.075e^-4	1	UPSTREAM CG8785 INTRON CG8785	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9411870	3L_9411870_SNP [dm3] 3L_9418770_SNP [dm6]	G	T	7.111e^-4	1	INTRON CG3967	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	20767089	3R_20767089_SNP [dm3] 3R_24941367_SNP [dm6]	T	A	7.115e^-4	1	SYNONYMOUS_CODING ssh	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	27618802	3R_27618802_SNP [dm3] 3R_31793080_SNP [dm6]	G	A	7.120e^-4	1	SYNONYMOUS_CODING CG2118 UPSTREAM Acf1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	6735902	2R_6735902_SNP [dm3] 2R_10848397_SNP [dm6]	T	A	7.120e^-4	1	INTRON CG30015	TF binding site mE1_TFBS_cad
2R	8564805	2R_8564805_SNP [dm3] 2R_12677300_SNP [dm6]	G	A	7.132e^-4	1	UPSTREAM CG42708 INTRON CG42708
3L	13705237	3L_13705237_SNP [dm3] 3L_13712137_SNP [dm6]	A	T	7.132e^-4	1	INTRON bru-3
3L	13705238	3L_13705238_SNP [dm3] 3L_13712138_SNP [dm6]	C	T	7.132e^-4	1	INTRON bru-3
3L	13705240	3L_13705240_SNP [dm3] 3L_13712140_SNP [dm6]	A	C	7.132e^-4	1	INTRON bru-3
2R	7047817	2R_7047817_DEL [dm3] 2R_11160312_DEL [dm6]	TACAT	T	7.133e^-4	1	INTRON shn & 1 other
3L	21034906	3L_21034906_SNP [dm3] 3L_21041806_SNP [dm6]	A	G	7.152e^-4	1	INTRON siz
3L	1259428	3L_1259428_SNP [dm3] 3L_1259428_SNP [dm6]	G	T	7.163e^-4	1	INTRON CG9134
3L	13298766	3L_13298766_SNP [dm3] 3L_13305666_SNP [dm6]	C	T	7.163e^-4	1	INTERGENIC
3L	3658296	3L_3658296_SNP [dm3] 3L_3658296_SNP [dm6]	T	C	7.163e^-4	1	UPSTREAM CG43098 INTERGENIC
X	16759890	X_16759890_SNP [dm3] X_16865857_SNP [dm6]	G	A	7.169e^-4	1	INTRON CG13003	TF binding site BDTNP1_TFBS_twi
2R	6735905	2R_6735905_SNP [dm3] 2R_10848400_SNP [dm6]	G	T	7.171e^-4	1	INTRON CG30015	TF binding site mE1_TFBS_cad
2L	17552180	2L_17552180_SNP [dm3] 2L_17552180_SNP [dm6]	T	C	7.174e^-4	1	INTERGENIC
3L	5276539	3L_5276539_SNP [dm3] 3L_5283439_SNP [dm6]	G	C	7.185e^-4	1	INTERGENIC
3L	17795686	3L_17795686_SNP [dm3] 3L_17802586_SNP [dm6]	A	T	7.234e^-4	1	UTR_3_PRIME CG5589 UPSTREAM NUCB1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17795704	3L_17795704_SNP [dm3] 3L_17802604_SNP [dm6]	T	A	7.234e^-4	1	UTR_3_PRIME CG5589 UPSTREAM NUCB1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2798593	2R_2798593_SNP [dm3] 2R_6911088_SNP [dm6]	T	G	7.236e^-4	1	INTRON CG30158
2R	6326670	2R_6326670_SNP [dm3] 2R_10439165_SNP [dm6]	G	C	7.245e^-4	1	UPSTREAM Galphao INTRON Galphao	TF binding site BDTNP1_TFBS_dl
2R	12355550	2R_12355550_SNP [dm3] 2R_16468045_SNP [dm6]	C	T	7.251e^-4	1	UPSTREAM CheB53b DOWNSTREAM CheB53a INTERGENIC
2L	2064484	2L_2064484_SNP [dm3] 2L_2064484_SNP [dm6]	A	C	7.256e^-4	1	INTRON dpr3
X	12293979	X_12293979_INS [dm3] X_12399946_INS [dm6]	T	TATAT	7.256e^-4	1	INTERGENIC
2R	14390659	2R_14390659_SNP [dm3] 2R_18503154_SNP [dm6]	G	T	7.258e^-4	1	UPSTREAM GstE11 INTERGENIC
2R	13837396	2R_13837396_SNP [dm3] 2R_17949891_SNP [dm6]	T	C	7.261e^-4	1	INTERGENIC
X	9666190	X_9666190_SNP [dm3] X_9772157_SNP [dm6]	T	G	7.264e^-4	1	INTERGENIC
3R	13571654	3R_13571654_SNP [dm3] 3R_17745932_SNP [dm6]	A	T	7.274e^-4	1	UTR_3_PRIME TyrRII	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3007408	2L_3007408_SNP [dm3] 2L_3007408_SNP [dm6]	C	T	7.282e^-4	1	INTRON CG17265	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26615924	3R_26615924_SNP [dm3] 3R_30790202_SNP [dm6]	A	G	7.286e^-4	1	UTR_3_PRIME wts DOWNSTREAM zfh1
2R	16447386	2R_16447386_SNP [dm3] 2R_20559881_SNP [dm6]	C	T	7.294e^-4	1	UTR_3_PRIME lms & 1 other DOWNSTREAM lms	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	3721030	3L_3721030_SNP [dm3] 3L_3721030_SNP [dm6]	T	A	7.303e^-4	1	INTRON CG32264
X	2578627	X_2578627_INS [dm3] X_2684594_INS [dm6]	T	TCGT	7.324e^-4	1	UPSTREAM CR44470 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	2579321	X_2579321_SNP [dm3] X_2685288_SNP [dm6]	A	G	7.324e^-4	1	UPSTREAM per INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	13083866	3L_13083866_SNP [dm3] 3L_13090766_SNP [dm6]	A	T	7.338e^-4	1	UPSTREAM CG11251 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	21200386	3L_21200386_SNP [dm3] 3L_21207286_SNP [dm6]	A	G	7.355e^-4	1	DOWNSTREAM CG10510 INTRON CG10512	TF binding site mE1_TFBS_inv
3L	8392246	3L_8392246_SNP [dm3] 3L_8399146_SNP [dm6]	T	A	7.367e^-4	1	INTRON CG7120
3L	13257094	3L_13257094_SNP [dm3] 3L_13263994_SNP [dm6]	G	A	7.374e^-4	1	INTRON caps	enhancer mE1_CBP_Enhancers
3L	9748841	3L_9748841_SNP [dm3] 3L_9755741_SNP [dm6]	T	C	7.378e^-4	1	INTRON CG42268
3L	13148128	3L_13148128_SNP [dm3] 3L_13155028_SNP [dm6]	T	C	7.392e^-4	1	INTERGENIC
2L	10531399	2L_10531399_SNP [dm3] 2L_10531399_SNP [dm6]	A	G	7.401e^-4	1	NON_SYNONYMOUS_CODING Lip4 UPSTREAM CG18301
3R	10807334	3R_10807334_DEL [dm3] 3R_14981612_DEL [dm6]	AA	A	7.411e^-4	1	INTERGENIC
2L	9320762	2L_9320762_SNP [dm3] 2L_9320762_SNP [dm6]	T	A	7.433e^-4	1	INTERGENIC
2R	12819354	2R_12819354_SNP [dm3] 2R_16931849_SNP [dm6]	T	C	7.450e^-4	1	INTRON Pkc53E
2L	8447265	2L_8447265_SNP [dm3] 2L_8447265_SNP [dm6]	A	G	7.451e^-4	1	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	8447278	2L_8447278_SNP [dm3] 2L_8447278_SNP [dm6]	T	G	7.451e^-4	1	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	19742004	X_19742004_SNP [dm3] X_19847971_SNP [dm6]	G	A	7.457e^-4	1	INTRON pico	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	19742677	X_19742677_SNP [dm3] X_19848644_SNP [dm6]	G	A	7.457e^-4	1	UPSTREAM pico INTRON pico	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	19742774	X_19742774_SNP [dm3] X_19848741_SNP [dm6]	G	A	7.457e^-4	1	UPSTREAM pico INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	19742781	X_19742781_SNP [dm3] X_19848748_SNP [dm6]	A	C	7.457e^-4	1	UPSTREAM pico INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	19743004	X_19743004_SNP [dm3] X_19848971_SNP [dm6]	T	G	7.457e^-4	1	UPSTREAM pico INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19743273	X_19743273_SNP [dm3] X_19849240_SNP [dm6]	A	G	7.457e^-4	1	UPSTREAM pico INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19743444	X_19743444_SNP [dm3] X_19849411_SNP [dm6]	G	A	7.457e^-4	1	UPSTREAM pico INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19744691	X_19744691_SNP [dm3] X_19850658_SNP [dm6]	A	T	7.457e^-4	1	UPSTREAM pico INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	19744756	X_19744756_SNP [dm3] X_19850723_SNP [dm6]	T	A	7.457e^-4	1	UPSTREAM pico INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	19744758	X_19744758_SNP [dm3] X_19850725_SNP [dm6]	T	G	7.457e^-4	1	UPSTREAM pico INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	19744782	X_19744782_SNP [dm3] X_19850749_SNP [dm6]	C	T	7.457e^-4	1	UPSTREAM pico INTRON pico	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	19745719	X_19745719_SNP [dm3] X_19851686_SNP [dm6]	T	C	7.457e^-4	1	UTR_5_PRIME pico UPSTREAM Nup205	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	6832974	3R_6832974_SNP [dm3] 3R_11007252_SNP [dm6]	G	A	7.462e^-4	1	INTRON CG34114	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	6833450	3R_6833450_SNP [dm3] 3R_11007728_SNP [dm6]	T	A	7.462e^-4	1	INTRON CG34114	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	6836534	3R_6836534_DEL [dm3] 3R_11010812_DEL [dm6]	TGTCAACTCCAAATTTACCC...	T	7.462e^-4	1	INTRON CG34114
3R	6836565	3R_6836565_SNP [dm3] 3R_11010843_SNP [dm6]	A	T	7.462e^-4	1	INTRON CG34114
3R	6836567	3R_6836567_SNP [dm3] 3R_11010845_SNP [dm6]	A	G	7.462e^-4	1	INTRON CG34114
3R	6836608	3R_6836608_DEL [dm3] 3R_11010886_DEL [dm6]	GTCTGTTTTTTACCA...	TAAAAC	7.462e^-4	1	INTRON CG34114
3L	9642137	3L_9642137_SNP [dm3] 3L_9649037_SNP [dm6]	C	T	7.468e^-4	1	INTRON fry & 1 other
2R	10100873	2R_10100873_SNP [dm3] 2R_14213368_SNP [dm6]	C	A	7.469e^-4	1	UPSTREAM Sox15 INTERGENIC
2R	19646476	2R_19646476_SNP [dm3] 2R_23758953_SNP [dm6]	C	T	7.472e^-4	1	INTRON CG9850	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	11456114	3R_11456114_SNP [dm3] 3R_15630392_SNP [dm6]	T	G	7.476e^-4	1	INTERGENIC
3L	17795482	3L_17795482_SNP [dm3] 3L_17802382_SNP [dm6]	T	G	7.486e^-4	1	UPSTREAM NUCB1 DOWNSTREAM CG5589 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4188122	2L_4188122_SNP [dm3] 2L_4188122_SNP [dm6]	G	A	7.486e^-4	1	UPSTREAM lectin-24Db & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13295357	3L_13295357_SNP [dm3] 3L_13302257_SNP [dm6]	G	A	7.497e^-4	1	UPSTREAM CR43911 DOWNSTREAM CR44557 & 1 other INTERGENIC
3L	9523928	3L_9523928_SNP [dm3] 3L_9530828_SNP [dm6]	A	T	7.507e^-4	1	SYNONYMOUS_CODING Or67a
3L	12128460	3L_12128460_SNP [dm3] 3L_12135360_SNP [dm6]	G	A	7.518e^-4	1	SYNONYMOUS_CODING CG5645	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	20065064	2L_20065064_SNP [dm3] 2L_20065064_SNP [dm6]	G	T	7.521e^-4	1	NON_SYNONYMOUS_CODING vls DOWNSTREAM lok	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8392678	2L_8392678_SNP [dm3] 2L_8392678_SNP [dm6]	G	T	7.551e^-4	1	SYNONYMOUS_CODING Acp29AB UPSTREAM CG42820 DOWNSTREAM lectin-29Ca	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	8392690	2L_8392690_SNP [dm3] 2L_8392690_SNP [dm6]	C	A	7.551e^-4	1	SYNONYMOUS_CODING Acp29AB UPSTREAM CG42820 DOWNSTREAM lectin-29Ca	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	14694033	2L_14694033_SNP [dm3] 2L_14694033_SNP [dm6]	G	C	7.593e^-4	1	INTERGENIC
2L	6951194	2L_6951194_SNP [dm3] 2L_6951194_SNP [dm6]	A	T	7.604e^-4	1	SYNONYMOUS_CODING SA UPSTREAM Gas41	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	10230179	2R_10230179_SNP [dm3] 2R_14342674_SNP [dm6]	G	T	7.605e^-4	1	INTRON Shroom	TF binding site mE1_TFBS_HSA
2R	19924960	2R_19924960_SNP [dm3] 2R_24037437_SNP [dm6]	C	T	7.609e^-4	1	SYNONYMOUS_CODING Not11 UPSTREAM IntS1 DOWNSTREAM MAN1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	17998386	2L_17998386_SNP [dm3] 2L_17998386_SNP [dm6]	C	T	7.610e^-4	1	INTERGENIC
2L	13188975	2L_13188975_SNP [dm3] 2L_13188975_SNP [dm6]	C	T	7.617e^-4	1	NON_SYNONYMOUS_CODING CG16974	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13354241	3L_13354241_SNP [dm3] 3L_13361141_SNP [dm6]	A	G	7.620e^-4	1	INTERGENIC
3R	27619519	3R_27619519_SNP [dm3] 3R_31793797_SNP [dm6]	T	C	7.621e^-4	1	START_GAINED CG2118 UTR_5_PRIME CG2118 UPSTREAM Acf1 & 1 other INTRON CG2118	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA
3R	27619579	3R_27619579_SNP [dm3] 3R_31793857_SNP [dm6]	C	T	7.621e^-4	1	UTR_5_PRIME CG2118 UPSTREAM Acf1 & 1 other INTRON CG2118	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA
2R	8440370	2R_8440370_SNP [dm3] 2R_12552865_SNP [dm6]	A	G	7.637e^-4	1	INTRON fra
2L	17036824	2L_17036824_SNP [dm3] 2L_17036824_SNP [dm6]	T	A	7.653e^-4	1	INTERGENIC
2L	19929053	2L_19929053_DEL [dm3] 2L_19929053_DEL [dm6]	AA	A	7.656e^-4	1	INTRON sick
2L	19929061	2L_19929061_SNP [dm3] 2L_19929061_SNP [dm6]	G	T	7.656e^-4	1	INTRON sick
2L	19831506	2L_19831506_SNP [dm3] 2L_19831506_SNP [dm6]	C	T	7.685e^-4	1	INTRON sick	TF binding site BDTNP1_TFBS_twi
3L	6697799	3L_6697799_SNP [dm3] 3L_6704699_SNP [dm6]	G	C	7.687e^-4	1	UPSTREAM CG8519 INTERGENIC
3R	20871380	3R_20871380_SNP [dm3] 3R_25045658_SNP [dm6]	G	A	7.701e^-4	1	UPSTREAM 5PtaseI & 1 other INTERGENIC
3R	13945899	3R_13945899_INS [dm3] 3R_18120177_INS [dm6]	C	CTGTATC	7.705e^-4	1	INTRON sr
2R	9463422	2R_9463422_SNP [dm3] 2R_13575917_SNP [dm6]	A	G	7.718e^-4	1	EXON CR44365	TF binding site BDTNP1_TFBS_dl
2R	9588160	2R_9588160_SNP [dm3] 2R_13700655_SNP [dm6]	A	C	7.730e^-4	1	INTRON fas
3L	10093081	3L_10093081_SNP [dm3] 3L_10099981_SNP [dm6]	T	C	7.733e^-4	1	SYNONYMOUS_CODING CG42826 INTRON dpr6
3R	10081298	3R_10081298_SNP [dm3] 3R_14255576_SNP [dm6]	G	T	7.738e^-4	1	UPSTREAM CG43179 INTRON Aats-met
3R	10414966	3R_10414966_SNP [dm3] 3R_14589244_SNP [dm6]	G	A	7.739e^-4	1	INTRON stumps	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9322049	2R_9322049_SNP [dm3] 2R_13434544_SNP [dm6]	G	A	7.752e^-4	1	SYNONYMOUS_CODING Ser8 DOWNSTREAM CG30065 INTRON CG42321
3R	27622511	3R_27622511_SNP [dm3] 3R_31796789_SNP [dm6]	G	C	7.752e^-4	1	NON_SYNONYMOUS_CODING Acf1
3R	11456219	3R_11456219_SNP [dm3] 3R_15630497_SNP [dm6]	T	A	7.756e^-4	1	INTERGENIC
2R	17770717	2R_17770717_SNP [dm3] 2R_21883212_SNP [dm6]	C	T	7.773e^-4	1	UPSTREAM Fili & 1 other INTRON Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2R	17770737	2R_17770737_SNP [dm3] 2R_21883232_SNP [dm6]	T	G	7.773e^-4	1	UPSTREAM Fili & 1 other INTRON Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	19879282	2L_19879282_DEL [dm3] 2L_19879282_DEL [dm6]	GGCCG	C	7.777e^-4	1	INTRON sick
X	19733294	X_19733294_SNP [dm3] X_19839261_SNP [dm6]	T	A	7.786e^-4	1	INTRON pico	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	4918383	X_4918383_SNP [dm3] X_5024350_SNP [dm6]	A	G	7.800e^-4	1	INTRON CR44833	regulatory region REDfly_CRMs
2L	9550190	2L_9550190_SNP [dm3] 2L_9550190_SNP [dm6]	C	G	7.807e^-4	1	INTRON jp	TF binding site mE1_TFBS_cad
3R	9423578	3R_9423578_DEL [dm3] 3R_13597856_DEL [dm6]	CG	C	7.816e^-4	1	INTERGENIC
2R	18025153	2R_18025153_SNP [dm3] 2R_22137648_SNP [dm6]	A	T	7.820e^-4	1	UTR_5_PRIME a INTRON a
2R	18025164	2R_18025164_SNP [dm3] 2R_22137659_SNP [dm6]	T	A	7.820e^-4	1	UTR_5_PRIME a INTRON a
3R	13596970	3R_13596970_SNP [dm3] 3R_17771248_SNP [dm6]	A	G	7.821e^-4	1	SYNONYMOUS_CODING CG43102
2R	9322052	2R_9322052_SNP [dm3] 2R_13434547_SNP [dm6]	A	G	7.828e^-4	1	SYNONYMOUS_CODING Ser8 DOWNSTREAM CG30065 INTRON CG42321
3R	21650977	3R_21650977_SNP [dm3] 3R_25825255_SNP [dm6]	A	C	7.830e^-4	1	UPSTREAM CR44949 INTERGENIC
X	9666289	X_9666289_SNP [dm3] X_9772256_SNP [dm6]	T	C	7.831e^-4	1	INTERGENIC
X	18491640	X_18491640_SNP [dm3] X_18597607_SNP [dm6]	A	T	7.836e^-4	1	INTERGENIC
2R	19386001	2R_19386001_SNP [dm3] 2R_23498478_SNP [dm6]	T	C	7.843e^-4	1	INTERGENIC
3L	6991681	3L_6991681_SNP [dm3] 3L_6998581_SNP [dm6]	A	G	7.843e^-4	1	UPSTREAM Mp INTERGENIC	TF binding site mE1_TFBS_HSA
3L	13295278	3L_13295278_SNP [dm3] 3L_13302178_SNP [dm6]	A	G	7.847e^-4	1	UPSTREAM CR43911 DOWNSTREAM CR44557 & 1 other INTERGENIC
2L	6425687	2L_6425687_SNP [dm3] 2L_6425687_SNP [dm6]	G	T	7.861e^-4	1	INTRON Fic	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	6425786	2L_6425786_SNP [dm3] 2L_6425786_SNP [dm6]	T	C	7.861e^-4	1	SYNONYMOUS_CODING Fic DOWNSTREAM CG9527	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	12603343	2L_12603343_INS [dm3] 2L_12603343_INS [dm6]	A	AATAAGAATTTTTATTTGGG...	7.874e^-4	1	INTRON nub	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	7508194	2R_7508194_SNP [dm3] 2R_11620689_SNP [dm6]	C	G	7.876e^-4	1	UTR_3_PRIME CG9005	TF binding site BDTNP1_TFBS_da
X	19039317	X_19039317_SNP [dm3] X_19145284_SNP [dm6]	T	C	7.904e^-4	1	INTRON RhoGAP18B
3R	23605570	3R_23605570_SNP [dm3] 3R_27779848_SNP [dm6]	T	G	7.915e^-4	1	INTRON CG34353	TF binding site mE1_TFBS_chinmo
X	20142483	X_20142483_SNP [dm3] X_20271457_SNP [dm6]	A	C	7.925e^-4	1	INTERGENIC
2L	11797185	2L_11797185_SNP [dm3] 2L_11797185_SNP [dm6]	A	G	7.935e^-4	1	SYNONYMOUS_CODING crol DOWNSTREAM snoRNA:Me18S-A934	TF binding site mE1_TFBS_cad
2R	8564825	2R_8564825_SNP [dm3] 2R_12677320_SNP [dm6]	A	T	7.956e^-4	1	UPSTREAM CG42708 INTRON CG42708
X	18477022	X_18477022_SNP [dm3] X_18582989_SNP [dm6]	C	T	7.960e^-4	1	INTERGENIC
X	18477044	X_18477044_SNP [dm3] X_18583011_SNP [dm6]	A	G	7.960e^-4	1	INTERGENIC
3L	5415718	3L_5415718_SNP [dm3] 3L_5422618_SNP [dm6]	C	T	7.969e^-4	1	INTERGENIC
X	5260374	X_5260374_SNP [dm3] X_5366341_SNP [dm6]	G	C	7.975e^-4	1	INTRON SK
3R	27613760	3R_27613760_SNP [dm3] 3R_31788038_SNP [dm6]	C	G	7.981e^-4	1	SYNONYMOUS_CODING faf	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10488600	3L_10488600_INS [dm3] 3L_10495500_INS [dm6]	T	TC	7.983e^-4	1	INTRON A2bp1
X	1769521	X_1769521_SNP [dm3] X_1875488_SNP [dm6]	G	A	7.986e^-4	1	SYNONYMOUS_CODING Vps26 DOWNSTREAM CG14817
3R	22409434	3R_22409434_SNP [dm3] 3R_26583712_SNP [dm6]	G	A	7.989e^-4	1	DOWNSTREAM scrib INTRON scrib
3L	16037770	3L_16037770_INS [dm3] 3L_16044670_INS [dm6]	A	AA	7.998e^-4	1	INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
3R	17913721	3R_17913721_SNP [dm3] 3R_22087999_SNP [dm6]	A	C	8.004e^-4	1	DOWNSTREAM CG5791 INTRON CG5778
2L	10487385	2L_10487385_SNP [dm3] 2L_10487385_SNP [dm6]	T	C	8.021e^-4	1	SYNONYMOUS_CODING CG7456	TF binding site mE1_TFBS_inv
2R	12505043	2R_12505043_SNP [dm3] 2R_16617538_SNP [dm6]	T	A	8.053e^-4	1	UPSTREAM CG5065 INTRON CG5065
2R	12505045	2R_12505045_DEL [dm3] 2R_16617540_DEL [dm6]	TG	T	8.053e^-4	1	UPSTREAM CG5065 INTRON CG5065
2R	15288556	2R_15288556_SNP [dm3] 2R_19401051_SNP [dm6]	A	G	8.063e^-4	1	SYNONYMOUS_CODING hts DOWNSTREAM hts INTRON hts EXON CR43430
3L	2055655	3L_2055655_SNP [dm3] 3L_2055655_SNP [dm6]	T	A	8.064e^-4	1	NON_SYNONYMOUS_CODING sls INTRON sls
X	19743939	X_19743939_SNP [dm3] X_19849906_SNP [dm6]	C	T	8.079e^-4	1	INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5275988	2L_5275988_SNP [dm3] 2L_5275988_SNP [dm6]	C	A	8.079e^-4	1	INTRON Bsg25D	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad
3R	21948881	3R_21948881_SNP [dm3] 3R_26123159_SNP [dm6]	G	T	8.082e^-4	1	INTRON CG31324
3R	2174486	3R_2174486_SNP [dm3] 3R_6348764_SNP [dm6]	C	T	8.084e^-4	1	UPSTREAM Hr83 INTERGENIC
3L	6318612	3L_6318612_SNP [dm3] 3L_6325512_SNP [dm6]	T	A	8.115e^-4	1	UPSTREAM Or65b INTERGENIC
3L	22101240	3L_22101240_SNP [dm3] 3L_22108140_SNP [dm6]	A	G	8.116e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2R	13389411	2R_13389411_SNP [dm3] 2R_17501906_SNP [dm6]	C	T	8.150e^-4	1	UPSTREAM CG43164 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	8434652	X_8434652_SNP [dm3] X_8540619_SNP [dm6]	G	T	8.153e^-4	1	INTRON Nrg
2L	7022271	2L_7022271_SNP [dm3] 2L_7022271_SNP [dm6]	T	A	8.167e^-4	1	SYNONYMOUS_CODING Pcp INTRON ade3
3R	14180608	3R_14180608_SNP [dm3] 3R_18354886_SNP [dm6]	T	C	8.170e^-4	1	SYNONYMOUS_CODING CG15803	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12355546	2R_12355546_SNP [dm3] 2R_16468041_SNP [dm6]	G	T	8.175e^-4	1	UPSTREAM CheB53b DOWNSTREAM CheB53a INTERGENIC
2R	12355548	2R_12355548_SNP [dm3] 2R_16468043_SNP [dm6]	C	T	8.175e^-4	1	UPSTREAM CheB53b DOWNSTREAM CheB53a INTERGENIC
3L	3915754	3L_3915754_SNP [dm3] 3L_3915754_SNP [dm6]	G	C	8.192e^-4	1	INTRON Eip63F-1
3L	3915758	3L_3915758_SNP [dm3] 3L_3915758_SNP [dm6]	A	T	8.192e^-4	1	INTRON Eip63F-1
X	15548990	X_15548990_SNP [dm3] X_15654957_SNP [dm6]	C	G	8.202e^-4	1	INTERGENIC
2L	9347408	2L_9347408_SNP [dm3] 2L_9347408_SNP [dm6]	A	T	8.214e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9347427	2L_9347427_SNP [dm3] 2L_9347427_SNP [dm6]	A	C	8.214e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17963587	3L_17963587_SNP [dm3] 3L_17970487_SNP [dm6]	A	G	8.216e^-4	1	SYNONYMOUS_CODING Eip75B INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19408900	2L_19408900_SNP [dm3] 2L_19408900_SNP [dm6]	C	G	8.229e^-4	1	INTRON Pax
2L	19409055	2L_19409055_SNP [dm3] 2L_19409055_SNP [dm6]	T	C	8.229e^-4	1	INTRON Pax
2L	19412274	2L_19412274_SNP [dm3] 2L_19412274_SNP [dm6]	G	A	8.229e^-4	1	UPSTREAM Pax INTRON Pax
2L	19412317	2L_19412317_SNP [dm3] 2L_19412317_SNP [dm6]	C	T	8.229e^-4	1	UPSTREAM Pax INTRON Pax
2L	19412325	2L_19412325_SNP [dm3] 2L_19412325_SNP [dm6]	C	T	8.229e^-4	1	UPSTREAM Pax INTRON Pax
2L	15226011	2L_15226011_SNP [dm3] 2L_15226011_SNP [dm6]	T	A	8.232e^-4	1	INTERGENIC
3R	3855691	3R_3855691_DEL [dm3] 3R_8029969_DEL [dm6]	CTTG	C	8.237e^-4	1	UPSTREAM CG10903 & 1 other INTRON CG2747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_Trl
3R	11978780	3R_11978780_SNP [dm3] 3R_16153058_SNP [dm6]	G	T	8.242e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	9020196	3L_9020196_SNP [dm3] 3L_9027096_SNP [dm6]	T	A	8.322e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2R	6676135	2R_6676135_SNP [dm3] 2R_10788630_SNP [dm6]	G	C	8.331e^-4	1	INTRON CG33144
3L	6320249	3L_6320249_SNP [dm3] 3L_6327149_SNP [dm6]	A	T	8.332e^-4	1	UPSTREAM Or65c DOWNSTREAM Or65b INTERGENIC
2L	14010395	2L_14010395_SNP [dm3] 2L_14010395_SNP [dm6]	T	C	8.349e^-4	1	DOWNSTREAM tRNA:Q:34E INTERGENIC
2L	17134468	2L_17134468_SNP [dm3] 2L_17134468_SNP [dm6]	A	G	8.361e^-4	1	INTRON beat-IIIa & 1 other
X	18189363	X_18189363_SNP [dm3] X_18295330_SNP [dm6]	G	T	8.364e^-4	1	INTERGENIC
2R	13821756	2R_13821756_SNP [dm3] 2R_17934251_SNP [dm6]	A	G	8.366e^-4	1	INTERGENIC
3L	5681304	3L_5681304_SNP [dm3] 3L_5688204_SNP [dm6]	C	T	8.393e^-4	1	INTRON sif
3L	17978802	3L_17978802_SNP [dm3] 3L_17985702_SNP [dm6]	A	G	8.393e^-4	1	INTRON Eip75B
2R	11065328	2R_11065328_SNP [dm3] 2R_15177823_SNP [dm6]	G	C	8.396e^-4	1	INTRON igl
2R	13269366	2R_13269366_SNP [dm3] 2R_17381861_SNP [dm6]	C	G	8.397e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
3L	14487853	3L_14487853_SNP [dm3] 3L_14494753_SNP [dm6]	G	C	8.402e^-4	1	INTRON bbg
3L	17440117	3L_17440117_SNP [dm3] 3L_17447017_SNP [dm6]	T	A	8.402e^-4	1	INTRON CG18265	TF binding site BDTNP1_TFBS_dl
3L	17440119	3L_17440119_SNP [dm3] 3L_17447019_SNP [dm6]	T	A	8.402e^-4	1	INTRON CG18265	TF binding site BDTNP1_TFBS_dl
3L	17447526	3L_17447526_SNP [dm3] 3L_17454426_SNP [dm6]	C	A	8.402e^-4	1	UTR_3_PRIME CG18265
3L	17451301	3L_17451301_SNP [dm3] 3L_17458201_SNP [dm6]	G	A	8.402e^-4	1	DOWNSTREAM CG18265 INTERGENIC
3L	624181	3L_624181_SNP [dm3] 3L_624181_SNP [dm6]	A	G	8.402e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	624184	3L_624184_SNP [dm3] 3L_624184_SNP [dm6]	T	A	8.402e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	624194	3L_624194_SNP [dm3] 3L_624194_SNP [dm6]	C	T	8.402e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	6471037	3R_6471037_SNP [dm3] 3R_10645315_SNP [dm6]	A	T	8.402e^-4	1	EXON CR44018	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	16755362	X_16755362_SNP [dm3] X_16861329_SNP [dm6]	A	T	8.402e^-4	1	INTRON CG13003
X	16756433	X_16756433_SNP [dm3] X_16862400_SNP [dm6]	G	A	8.402e^-4	1	INTRON CG13003
X	16756805	X_16756805_SNP [dm3] X_16862772_SNP [dm6]	A	C	8.402e^-4	1	INTRON CG13003
X	16763291	X_16763291_SNP [dm3] X_16869258_SNP [dm6]	G	A	8.402e^-4	1	INTRON CG13003
3L	8392253	3L_8392253_SNP [dm3] 3L_8399153_SNP [dm6]	T	A	8.405e^-4	1	INTRON CG7120
X	11734924	X_11734924_SNP [dm3] X_11840891_SNP [dm6]	T	C	8.449e^-4	1	INTRON Cyp28c1	TF binding site mE1_TFBS_chinmo
2R	13451078	2R_13451078_SNP [dm3] 2R_17563573_SNP [dm6]	A	T	8.453e^-4	1	UPSTREAM CG43324 & 1 other DOWNSTREAM Klp54D INTERGENIC	TF binding site mE1_TFBS_ttk
2R	13451152	2R_13451152_SNP [dm3] 2R_17563647_SNP [dm6]	G	T	8.453e^-4	1	UTR_5_PRIME CG43324 UPSTREAM CG14480 DOWNSTREAM Klp54D	TF binding site mE1_TFBS_ttk
3R	13922827	3R_13922827_SNP [dm3] 3R_18097105_SNP [dm6]	T	A	8.471e^-4	1	INTRON sr
3L	15525833	3L_15525833_SNP [dm3] 3L_15532733_SNP [dm6]	T	C	8.479e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16756598	X_16756598_SNP [dm3] X_16862565_SNP [dm6]	C	A	8.486e^-4	1	INTRON CG13003
3L	13269088	3L_13269088_SNP [dm3] 3L_13275988_SNP [dm6]	T	C	8.490e^-4	1	SYNONYMOUS_CODING caps	TF binding site mE1_TFBS_chinmo
X	3363398	X_3363398_SNP [dm3] X_3469365_SNP [dm6]	A	G	8.499e^-4	1	INTRON CR44999 & 1 other
2R	17283239	2R_17283239_SNP [dm3] 2R_21395734_SNP [dm6]	A	G	8.509e^-4	1	INTRON Sdc
3R	25789336	3R_25789336_SNP [dm3] 3R_29963614_SNP [dm6]	T	C	8.510e^-4	1	INTRON TkR99D
3L	10588236	3L_10588236_SNP [dm3] 3L_10595136_SNP [dm6]	C	T	8.526e^-4	1	INTERGENIC
2R	10148217	2R_10148217_SNP [dm3] 2R_14260712_SNP [dm6]	A	G	8.528e^-4	1	UTR_3_PRIME beta4GalNAcTA DOWNSTREAM CG8547
3L	7385083	3L_7385083_INS [dm3] 3L_7391983_INS [dm6]	A	TTAT	8.562e^-4	1	INTRON CG8563
3L	7385161	3L_7385161_SNP [dm3] 3L_7392061_SNP [dm6]	A	T	8.562e^-4	1	INTRON CG8563
3L	7385165	3L_7385165_SNP [dm3] 3L_7392065_SNP [dm6]	C	G	8.562e^-4	1	INTRON CG8563
3L	7385168	3L_7385168_SNP [dm3] 3L_7392068_SNP [dm6]	G	A	8.562e^-4	1	INTRON CG8563
3L	7385183	3L_7385183_SNP [dm3] 3L_7392083_SNP [dm6]	C	T	8.562e^-4	1	INTRON CG8563
2R	12528564	2R_12528564_SNP [dm3] 2R_16641059_SNP [dm6]	G	T	8.584e^-4	1	UPSTREAM gprs INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2L	9347444	2L_9347444_SNP [dm3] 2L_9347444_SNP [dm6]	G	T	8.588e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23673756	3R_23673756_SNP [dm3] 3R_27848034_SNP [dm6]	A	G	8.593e^-4	1	DOWNSTREAM Or98a INTRON CG34353
3R	23676701	3R_23676701_SNP [dm3] 3R_27850979_SNP [dm6]	G	A	8.593e^-4	1	INTRON CG34353
3L	13604324	3L_13604324_SNP [dm3] 3L_13611224_SNP [dm6]	C	T	8.594e^-4	1	INTRON bru-3
2R	9445805	2R_9445805_INS [dm3] 2R_13558300_INS [dm6]	T	TGT	8.595e^-4	1	UPSTREAM CG13334 & 3 others DOWNSTREAM link INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5963761	2L_5963761_SNP [dm3] 2L_5963761_SNP [dm6]	T	G	8.626e^-4	1	NON_SYNONYMOUS_CODING psd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	4117217	X_4117217_SNP [dm3] X_4223184_SNP [dm6]	A	T	8.629e^-4	1	UTR_3_PRIME CG15570
3R	20871372	3R_20871372_SNP [dm3] 3R_25045650_SNP [dm6]	G	C	8.637e^-4	1	UPSTREAM 5PtaseI & 1 other INTERGENIC
2L	7631040	2L_7631040_SNP [dm3] 2L_7631040_SNP [dm6]	C	T	8.645e^-4	1	INTERGENIC
X	6563809	X_6563809_SNP [dm3] X_6669776_SNP [dm6]	T	C	8.648e^-4	1	UTR_3_PRIME CG3198	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	8672837	3L_8672837_SNP [dm3] 3L_8679737_SNP [dm6]	A	G	8.650e^-4	1	DOWNSTREAM h INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	8672848	3L_8672848_SNP [dm3] 3L_8679748_SNP [dm6]	C	T	8.650e^-4	1	DOWNSTREAM h INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2L	17771545	2L_17771545_SNP [dm3] 2L_17771545_SNP [dm6]	T	C	8.656e^-4	1	INTRON CadN
2L	17771611	2L_17771611_SNP [dm3] 2L_17771611_SNP [dm6]	G	A	8.656e^-4	1	INTRON CadN
2R	8563519	2R_8563519_SNP [dm3] 2R_12676014_SNP [dm6]	T	G	8.670e^-4	1	UPSTREAM CG42708 INTRON CG42708	TF binding site mE1_TFBS_inv
2R	10132377	2R_10132377_SNP [dm3] 2R_14244872_SNP [dm6]	G	A	8.675e^-4	1	SYNONYMOUS_CODING CG8503
3R	25130021	3R_25130021_SNP [dm3] 3R_29304299_SNP [dm6]	C	A	8.678e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25130024	3R_25130024_SNP [dm3] 3R_29304302_SNP [dm6]	T	G	8.678e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	17781208	3R_17781208_SNP [dm3] 3R_21955486_SNP [dm6]	G	A	8.684e^-4	1	INTRON Eip93F
3R	17781248	3R_17781248_SNP [dm3] 3R_21955526_SNP [dm6]	G	A	8.684e^-4	1	INTRON Eip93F
3R	26844983	3R_26844983_SNP [dm3] 3R_31019261_SNP [dm6]	G	T	8.713e^-4	1	INTERGENIC
3L	7907033	3L_7907033_SNP [dm3] 3L_7913933_SNP [dm6]	T	C	8.721e^-4	1	SYNONYMOUS_CODING CG8111 DOWNSTREAM CG8281	TF binding site mE1_TFBS_chinmo
X	17366789	X_17366789_SNP [dm3] X_17472756_SNP [dm6]	C	T	8.752e^-4	1	INTRON CG43658
3R	16528961	3R_16528961_INS [dm3] 3R_20703239_INS [dm6]	T	TGTAAGATTGTTTATTATTA...	8.759e^-4	1	INTRON Oamb
2L	17291054	2L_17291054_SNP [dm3] 2L_17291054_SNP [dm6]	A	G	8.774e^-4	1	DOWNSTREAM CG6380 INTERGENIC
3L	5356449	3L_5356449_SNP [dm3] 3L_5363349_SNP [dm6]	T	G	8.775e^-4	1	UTR_3_PRIME Uev1A DOWNSTREAM CG4769
2L	14460525	2L_14460525_SNP [dm3] 2L_14460525_SNP [dm6]	A	G	8.778e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3L	12088928	3L_12088928_SNP [dm3] 3L_12095828_SNP [dm6]	C	T	8.783e^-4	1	INTERGENIC
3R	19534508	3R_19534508_SNP [dm3] 3R_23708786_SNP [dm6]	A	T	8.783e^-4	1	DOWNSTREAM CG31414 INTERGENIC
3R	19534511	3R_19534511_SNP [dm3] 3R_23708789_SNP [dm6]	T	C	8.783e^-4	1	DOWNSTREAM CG31414 INTERGENIC
3L	13083847	3L_13083847_SNP [dm3] 3L_13090747_SNP [dm6]	T	G	8.797e^-4	1	UPSTREAM CG11251 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	13083857	3L_13083857_INS [dm3] 3L_13090757_INS [dm6]	A	AAATGAA	8.797e^-4	1	UPSTREAM CG11251 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	13083859	3L_13083859_SNP [dm3] 3L_13090759_SNP [dm6]	T	C	8.797e^-4	1	UPSTREAM CG11251 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	13083863	3L_13083863_SNP [dm3] 3L_13090763_SNP [dm6]	A	C	8.797e^-4	1	UPSTREAM CG11251 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	13083864	3L_13083864_SNP [dm3] 3L_13090764_SNP [dm6]	G	A	8.797e^-4	1	UPSTREAM CG11251 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	22305116	3R_22305116_SNP [dm3] 3R_26479394_SNP [dm6]	A	T	8.801e^-4	1	INTRON plum
3R	22305135	3R_22305135_SNP [dm3] 3R_26479413_SNP [dm6]	T	A	8.801e^-4	1	INTRON plum
X	2579857	X_2579857_SNP [dm3] X_2685824_SNP [dm6]	C	T	8.829e^-4	1	UTR_5_PRIME per
3L	17188725	3L_17188725_SNP [dm3] 3L_17195625_SNP [dm6]	G	C	8.830e^-4	1	INTRON Rbp6	TF binding site mE1_TFBS_inv
2R	8564418	2R_8564418_SNP [dm3] 2R_12676913_SNP [dm6]	C	A	8.831e^-4	1	UPSTREAM CG42708 INTRON CG42708
2R	9264154	2R_9264154_SNP [dm3] 2R_13376649_SNP [dm6]	C	T	8.837e^-4	1	INTRON CG10814	TF binding site mE1_TFBS_chinmo
2R	9264159	2R_9264159_SNP [dm3] 2R_13376654_SNP [dm6]	T	A	8.837e^-4	1	INTRON CG10814	TF binding site mE1_TFBS_chinmo
2R	9264163	2R_9264163_SNP [dm3] 2R_13376658_SNP [dm6]	C	G	8.837e^-4	1	INTRON CG10814	TF binding site mE1_TFBS_chinmo
3L	9417877	3L_9417877_SNP [dm3] 3L_9424777_SNP [dm6]	T	A	8.854e^-4	1	UTR_3_PRIME aay INTRON CG3967	TF binding site mE1_TFBS_cad
3R	18042611	3R_18042611_SNP [dm3] 3R_22216889_SNP [dm6]	G	A	8.875e^-4	1	UTR_3_PRIME Gld2 INTRON SKIP
3R	18042619	3R_18042619_SNP [dm3] 3R_22216897_SNP [dm6]	G	A	8.875e^-4	1	UTR_3_PRIME Gld2 INTRON SKIP
2L	17859445	2L_17859445_SNP [dm3] 2L_17859445_SNP [dm6]	G	T	8.884e^-4	1	INTRON CadN2
2L	10170746	2L_10170746_SNP [dm3] 2L_10170746_SNP [dm6]	T	G	8.889e^-4	1	INTRON CG44153
3R	13589843	3R_13589843_SNP [dm3] 3R_17764121_SNP [dm6]	A	G	8.890e^-4	1	UPSTREAM TyrR INTERGENIC
X	4918390	X_4918390_SNP [dm3] X_5024357_SNP [dm6]	T	A	8.900e^-4	1	INTRON CR44833
2R	14148466	2R_14148466_SNP [dm3] 2R_18260961_SNP [dm6]	A	G	8.911e^-4	1	INTERGENIC
2L	20480854	2L_20480854_DEL [dm3] 2L_20480854_DEL [dm6]	TATTGCTAAGAGTAATAACT...	T	8.917e^-4	1	INTRON CR44980	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3222410	X_3222410_SNP [dm3] X_3328377_SNP [dm6]	G	C	8.933e^-4	1	INTRON CR44886 & 1 other
2R	19190145	2R_19190145_SNP [dm3] 2R_23302622_SNP [dm6]	T	C	8.950e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	3363370	X_3363370_SNP [dm3] X_3469337_SNP [dm6]	T	A	8.984e^-4	1	INTRON CR44999 & 1 other
2R	19645347	2R_19645347_SNP [dm3] 2R_23757824_SNP [dm6]	T	C	9.004e^-4	1	SYNONYMOUS_CODING CG9850
3L	17118277	3L_17118277_SNP [dm3] 3L_17125177_SNP [dm6]	A	C	9.009e^-4	1	INTRON Rbp6
3L	17118342	3L_17118342_SNP [dm3] 3L_17125242_SNP [dm6]	A	T	9.009e^-4	1	INTRON Rbp6
2L	8491836	2L_8491836_DEL [dm3] 2L_8491836_DEL [dm6]	CC	C	9.015e^-4	1	DOWNSTREAM Dh31 & 1 other INTERGENIC
3L	8210368	3L_8210368_SNP [dm3] 3L_8217268_SNP [dm6]	T	A	9.024e^-4	1	DOWNSTREAM CG13674 INTERGENIC
2L	19409952	2L_19409952_SNP [dm3] 2L_19409952_SNP [dm6]	A	G	9.045e^-4	1	INTRON Pax
2L	19409960	2L_19409960_SNP [dm3] 2L_19409960_SNP [dm6]	C	A	9.045e^-4	1	INTRON Pax
2L	19409972	2L_19409972_SNP [dm3] 2L_19409972_SNP [dm6]	G	T	9.045e^-4	1	INTRON Pax
2L	19409991	2L_19409991_SNP [dm3] 2L_19409991_SNP [dm6]	A	C	9.045e^-4	1	INTRON Pax
2L	19410010	2L_19410010_SNP [dm3] 2L_19410010_SNP [dm6]	C	T	9.045e^-4	1	INTRON Pax
3L	1257762	3L_1257762_SNP [dm3] 3L_1257762_SNP [dm6]	A	T	9.051e^-4	1	INTRON CG9134
3L	1793714	3L_1793714_SNP [dm3] 3L_1793714_SNP [dm6]	G	T	9.052e^-4	1	INTRON alpha-Spec & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	4069439	2R_4069439_SNP [dm3] 2R_8181934_SNP [dm6]	G	T	9.057e^-4	1	INTRON LRP1
3R	10464509	3R_10464509_SNP [dm3] 3R_14638787_SNP [dm6]	C	T	9.060e^-4	1	SYNONYMOUS_CODING Cad88C INTRON CG7886	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	16251799	2R_16251799_SNP [dm3] 2R_20364294_SNP [dm6]	A	G	9.066e^-4	1	INTERGENIC
3L	4675093	3L_4675093_SNP [dm3] 3L_4675093_SNP [dm6]	G	T	9.069e^-4	1	SYNONYMOUS_CODING axo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	10172075	2R_10172075_SNP [dm3] 2R_14284570_SNP [dm6]	T	C	9.071e^-4	1	INTRON Ih	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	8658742	3R_8658742_SNP [dm3] 3R_12833020_SNP [dm6]	C	G	9.088e^-4	1	INTERGENIC
2L	6936975	2L_6936975_SNP [dm3] 2L_6936975_SNP [dm6]	C	G	9.097e^-4	1	INTRON CG18304
X	4117596	X_4117596_SNP [dm3] X_4223563_SNP [dm6]	A	C	9.099e^-4	1	DOWNSTREAM CG15570 INTERGENIC
2L	17025966	2L_17025966_SNP [dm3] 2L_17025966_SNP [dm6]	A	C	9.103e^-4	1	INTERGENIC
3L	15448147	3L_15448147_SNP [dm3] 3L_15455047_SNP [dm6]	T	A	9.123e^-4	1	INTERGENIC
X	11734928	X_11734928_SNP [dm3] X_11840895_SNP [dm6]	C	T	9.129e^-4	1	INTRON Cyp28c1	TF binding site mE1_TFBS_chinmo
3R	11132172	3R_11132172_SNP [dm3] 3R_15306450_SNP [dm6]	T	C	9.160e^-4	1	SYNONYMOUS_CODING Tm1 DOWNSTREAM Tm1 INTRON Tm1	TF binding site BDTNP1_TFBS_sna
2L	1192228	2L_1192228_SNP [dm3] 2L_1192228_SNP [dm6]	C	T	9.176e^-4	1	INTRON CG5001	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8209108	3L_8209108_SNP [dm3] 3L_8216008_SNP [dm6]	T	A	9.176e^-4	1	UTR_3_PRIME CG8012 DOWNSTREAM CG8012
3R	27619197	3R_27619197_SNP [dm3] 3R_31793475_SNP [dm6]	G	T	9.178e^-4	1	SPLICE_SITE_REGION CG2118 UPSTREAM Acf1 & 1 other INTRON CG2118	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	14495263	2R_14495263_SNP [dm3] 2R_18607758_SNP [dm6]	T	A	9.185e^-4	1	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	21743573	3R_21743573_SNP [dm3] 3R_25917851_SNP [dm6]	T	C	9.205e^-4	1	SYNONYMOUS_CODING CG42235 DOWNSTREAM CG42235 INTRON CG42235
3L	10192625	3L_10192625_SNP [dm3] 3L_10199525_SNP [dm6]	G	C	9.210e^-4	1	INTRON ect
3L	9645382	3L_9645382_SNP [dm3] 3L_9652282_SNP [dm6]	A	G	9.215e^-4	1	INTRON fry & 1 other
2L	1963745	2L_1963745_SNP [dm3] 2L_1963745_SNP [dm6]	T	C	9.218e^-4	1	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	18278740	2R_18278740_SNP [dm3] 2R_22391235_SNP [dm6]	C	A	9.223e^-4	1	INTRON CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8757013	3L_8757013_SNP [dm3] 3L_8763913_SNP [dm6]	A	G	9.244e^-4	1	INTRON Fhos
2L	9320692	2L_9320692_SNP [dm3] 2L_9320692_SNP [dm6]	C	A	9.246e^-4	1	INTERGENIC
3R	17300251	3R_17300251_SNP [dm3] 3R_21474529_SNP [dm6]	A	T	9.269e^-4	1	INTERGENIC
2L	2650834	2L_2650834_SNP [dm3] 2L_2650834_SNP [dm6]	G	C	9.275e^-4	1	NON_SYNONYMOUS_CODING CG33125
2L	2650862	2L_2650862_SNP [dm3] 2L_2650862_SNP [dm6]	A	G	9.275e^-4	1	NON_SYNONYMOUS_CODING CG33125
2R	5430191	2R_5430191_SNP [dm3] 2R_9542686_SNP [dm6]	G	A	9.275e^-4	1	UTR_3_PRIME CG1888	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1870997	3L_1870997_SNP [dm3] 3L_1870997_SNP [dm6]	A	G	9.275e^-4	1	SYNONYMOUS_CODING CG13924 DOWNSTREAM dre4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1871029	3L_1871029_SNP [dm3] 3L_1871029_SNP [dm6]	C	A	9.275e^-4	1	NON_SYNONYMOUS_CODING CG13924 DOWNSTREAM dre4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1871204	3L_1871204_SNP [dm3] 3L_1871204_SNP [dm6]	G	A	9.275e^-4	1	SYNONYMOUS_CODING CG13924 DOWNSTREAM dre4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	1890662	X_1890662_SNP [dm3] X_1996629_SNP [dm6]	A	G	9.275e^-4	1	INTRON Hr4	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	1890674	X_1890674_SNP [dm3] X_1996641_SNP [dm6]	C	T	9.275e^-4	1	INTRON Hr4	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	10074015	2L_10074015_SNP [dm3] 2L_10074015_SNP [dm6]	T	G	9.277e^-4	1	INTRON CG44153
2R	3848480	2R_3848480_SNP [dm3] 2R_7960975_SNP [dm6]	G	C	9.288e^-4	1	SYNONYMOUS_CODING Sep5 UPSTREAM CG2915	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2R	3849357	2R_3849357_SNP [dm3] 2R_7961852_SNP [dm6]	T	C	9.288e^-4	1	UTR_5_PRIME Sep5 UPSTREAM nito	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
2R	8923857	2R_8923857_SNP [dm3] 2R_13036352_SNP [dm6]	T	C	9.297e^-4	1	INTERGENIC	TF binding site mE1_TFBS_Trl
3R	13876361	3R_13876361_SNP [dm3] 3R_18050639_SNP [dm6]	G	T	9.307e^-4	1	INTRON htl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	20631691	2R_20631691_SNP [dm3] 2R_24744168_SNP [dm6]	C	T	9.316e^-4	1	UTR_5_PRIME CG30421	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14174865	3R_14174865_SNP [dm3] 3R_18349143_SNP [dm6]	T	C	9.317e^-4	1	INTRON CG15803
2L	5745417	2L_5745417_SNP [dm3] 2L_5745417_SNP [dm6]	C	T	9.349e^-4	1	UPSTREAM CG11029 INTRON CG11030
2L	8644340	2L_8644340_SNP [dm3] 2L_8644340_SNP [dm6]	C	A	9.354e^-4	1	INTRON Sema-1a
2L	15062931	2L_15062931_SNP [dm3] 2L_15062931_SNP [dm6]	G	T	9.355e^-4	1	UTR_3_PRIME vig INTRON vas
2L	8179660	2L_8179660_SNP [dm3] 2L_8179660_SNP [dm6]	T	C	9.360e^-4	1	SYNONYMOUS_CODING Piezo	TF binding site mE1_TFBS_cad
3L	12789443	3L_12789443_SNP [dm3] 3L_12796343_SNP [dm6]	T	C	9.368e^-4	1	DOWNSTREAM CG42709 INTRON Atg1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	14540831	2R_14540831_SNP [dm3] 2R_18653326_SNP [dm6]	A	G	9.375e^-4	1	UPSTREAM SP2637 INTRON SP2637	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	19743021	X_19743021_SNP [dm3] X_19848988_SNP [dm6]	T	G	9.388e^-4	1	UPSTREAM pico INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23598616	3R_23598616_SNP [dm3] 3R_27772894_SNP [dm6]	C	T	9.389e^-4	1	INTRON CG34353
2R	12527852	2R_12527852_DEL [dm3] 2R_16640347_DEL [dm6]	GTTGCTGCGA	G	9.402e^-4	1	UPSTREAM Alk & 1 other INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll mE1_TFBS_HSA
3L	22622207	3L_22622207_SNP [dm3] 3L_22629107_SNP [dm6]	C	G	9.421e^-4	1	INTRON CG14459
2R	17727842	2R_17727842_SNP [dm3] 2R_21840337_SNP [dm6]	G	A	9.427e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8209036	3L_8209036_SNP [dm3] 3L_8215936_SNP [dm6]	A	C	9.427e^-4	1	UTR_3_PRIME CG8012
3L	8209118	3L_8209118_SNP [dm3] 3L_8216018_SNP [dm6]	T	C	9.427e^-4	1	UTR_3_PRIME CG8012 DOWNSTREAM CG8012
2R	16105647	2R_16105647_SNP [dm3] 2R_20218142_SNP [dm6]	A	C	9.432e^-4	1	INTERGENIC
2L	10169238	2L_10169238_INS [dm3] 2L_10169238_INS [dm6]	A	AAT	9.474e^-4	1	INTRON CG44153
2R	10817408	2R_10817408_SNP [dm3] 2R_14929903_SNP [dm6]	T	C	9.477e^-4	1	UTR_3_PRIME CG10253 DOWNSTREAM CG10253	TF binding site mE1_TFBS_inv
3R	13885304	3R_13885304_SNP [dm3] 3R_18059582_SNP [dm6]	C	T	9.487e^-4	1	INTERGENIC
2R	11985168	2R_11985168_SNP [dm3] 2R_16097663_SNP [dm6]	C	T	9.491e^-4	1	INTRON Dg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	13446642	2R_13446642_SNP [dm3] 2R_17559137_SNP [dm6]	C	A	9.493e^-4	1	INTRON Klp54D
3R	6434069	3R_6434069_SNP [dm3] 3R_10608347_SNP [dm6]	C	T	9.499e^-4	1	INTRON hth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	10753726	2L_10753726_SNP [dm3] 2L_10753726_SNP [dm6]	G	T	9.503e^-4	1	UTR_5_PRIME CG17124 INTRON CG17124
2L	15990283	2L_15990283_SNP [dm3] 2L_15990283_SNP [dm6]	A	G	9.505e^-4	1	DOWNSTREAM CR43412 INTERGENIC
3R	23789754	3R_23789754_SNP [dm3] 3R_27964032_SNP [dm6]	T	C	9.510e^-4	1	SYNONYMOUS_CODING CG4849 UPSTREAM CG31131	TF binding site mE1_TFBS_cad mE1_TFBS_Ubx
2L	6255704	2L_6255704_SNP [dm3] 2L_6255704_SNP [dm6]	G	T	9.510e^-4	1	UPSTREAM CG9486 INTRON Ddr	TF binding site mE1_TFBS_HSA
3L	14352059	3L_14352059_SNP [dm3] 3L_14358959_SNP [dm6]	A	G	9.510e^-4	1	INTRON fz
3L	5277304	3L_5277304_SNP [dm3] 3L_5284204_SNP [dm6]	A	G	9.510e^-4	1	INTERGENIC
2L	1950392	2L_1950392_SNP [dm3] 2L_1950392_SNP [dm6]	C	G	9.545e^-4	1	UTR_3_PRIME erm
3R	20727904	3R_20727904_SNP [dm3] 3R_24902182_SNP [dm6]	A	G	9.561e^-4	1	SYNONYMOUS_CODING CG10845 INTRON CG13643	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3911472	3L_3911472_SNP [dm3] 3L_3911472_SNP [dm6]	C	T	9.582e^-4	1	UTR_3_PRIME Eip63F-1 DOWNSTREAM Eip63F-1
2R	10548312	2R_10548312_SNP [dm3] 2R_14660807_SNP [dm6]	T	A	9.592e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10548314	2R_10548314_INS [dm3] 2R_14660809_INS [dm6]	A	AA	9.592e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9320798	2L_9320798_SNP [dm3] 2L_9320798_SNP [dm6]	C	T	9.599e^-4	1	INTERGENIC
2L	9320816	2L_9320816_SNP [dm3] 2L_9320816_SNP [dm6]	C	T	9.599e^-4	1	INTERGENIC
2R	13454568	2R_13454568_SNP [dm3] 2R_17567063_SNP [dm6]	A	T	9.605e^-4	1	SYNONYMOUS_CODING Ns2
2R	15021746	2R_15021746_SNP [dm3] 2R_19134241_SNP [dm6]	A	G	9.610e^-4	1	SYNONYMOUS_CODING CG15118 UTR_3_PRIME CG15118 DOWNSTREAM botv	TF binding site mE1_TFBS_chinmo
3R	17300344	3R_17300344_SNP [dm3] 3R_21474622_SNP [dm6]	C	T	9.615e^-4	1	INTERGENIC
2L	14761030	2L_14761030_SNP [dm3] 2L_14761030_SNP [dm6]	A	G	9.622e^-4	1	SYNONYMOUS_CODING CG4691 UPSTREAM CR44858
2R	6305342	2R_6305342_SNP [dm3] 2R_10417837_SNP [dm6]	A	T	9.622e^-4	1	UPSTREAM CG42732 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	7354569	2L_7354569_SNP [dm3] 2L_7354569_SNP [dm6]	G	C	9.667e^-4	1	INTERGENIC
2L	5783066	2L_5783066_SNP [dm3] 2L_5783066_SNP [dm6]	A	C	9.670e^-4	1	UPSTREAM CG31913 INTRON CG9171
3L	15263359	3L_15263359_SNP [dm3] 3L_15270259_SNP [dm6]	C	T	9.673e^-4	1	INTERGENIC
X	9666807	X_9666807_SNP [dm3] X_9772774_SNP [dm6]	A	C	9.675e^-4	1	INTERGENIC
X	9666820	X_9666820_SNP [dm3] X_9772787_SNP [dm6]	T	G	9.675e^-4	1	INTERGENIC
2L	7097508	2L_7097508_SNP [dm3] 2L_7097508_SNP [dm6]	A	G	9.720e^-4	1	DOWNSTREAM Pvf3 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21744756	3R_21744756_SNP [dm3] 3R_25919034_SNP [dm6]	G	A	9.722e^-4	1	DOWNSTREAM CG42235 INTRON CG42235
X	20149025	X_20149025_SNP [dm3] X_20277999_SNP [dm6]	G	A	9.725e^-4	1	INTERGENIC	insulator Insulator_Class_II.mE01
2L	6008302	2L_6008302_SNP [dm3] 2L_6008302_SNP [dm6]	G	C	9.734e^-4	1	SYNONYMOUS_CODING CG9098
2R	14148488	2R_14148488_SNP [dm3] 2R_18260983_SNP [dm6]	A	G	9.737e^-4	1	INTERGENIC
2R	14148512	2R_14148512_SNP [dm3] 2R_18261007_SNP [dm6]	A	T	9.737e^-4	1	INTERGENIC
2L	5717044	2L_5717044_SNP [dm3] 2L_5717044_SNP [dm6]	G	A	9.744e^-4	1	UPSTREAM CG14007 DOWNSTREAM CR44818 INTRON CG34011
2L	14960397	2L_14960397_SNP [dm3] 2L_14960397_SNP [dm6]	G	A	9.748e^-4	1	INTRON CG42313
X	1317798	X_1317798_SNP [dm3] X_1423765_SNP [dm6]	T	C	9.748e^-4	1	INTRON futsch	TF binding site mE1_TFBS_cad
2R	8653536	2R_8653536_SNP [dm3] 2R_12766031_SNP [dm6]	G	A	9.775e^-4	1	INTERGENIC
3L	22519614	3L_22519614_SNP [dm3] 3L_22526514_SNP [dm6]	G	A	9.777e^-4	1	INTERGENIC
3R	23672598	3R_23672598_SNP [dm3] 3R_27846876_SNP [dm6]	C	T	9.779e^-4	1	SYNONYMOUS_CODING Or98a INTRON CG34353
2L	4219070	2L_4219070_SNP [dm3] 2L_4219070_SNP [dm6]	A	G	9.782e^-4	1	INTRON ft	TF binding site mE1_TFBS_HSA
2L	10419628	2L_10419628_SNP [dm3] 2L_10419628_SNP [dm6]	G	A	9.783e^-4	1	SYNONYMOUS_CODING RfC3 DOWNSTREAM Klp31E & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2R	3507306	2R_3507306_SNP [dm3] 2R_7619801_SNP [dm6]	C	T	9.796e^-4	1	INTRON CG1358	TF binding site mE1_TFBS_chinmo
2L	2623905	2L_2623905_SNP [dm3] 2L_2623905_SNP [dm6]	T	G	9.809e^-4	1	INTERGENIC
3L	22944490	3L_22944490_SNP [dm3] 3L_22951390_SNP [dm6]	G	A	9.820e^-4	1	SYNONYMOUS_STOP Mes2
2R	18577742	2R_18577742_SNP [dm3] 2R_22690237_SNP [dm6]	G	C	9.831e^-4	1	UPSTREAM CR44764 DOWNSTREAM CR44762 EXON CR44763	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
X	16539631	X_16539631_SNP [dm3] X_16645598_SNP [dm6]	T	C	9.843e^-4	1	INTRON mthl1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15498162	2L_15498162_SNP [dm3] 2L_15498162_SNP [dm6]	C	T	9.859e^-4	1	UPSTREAM lace INTERGENIC
X	16131225	X_16131225_SNP [dm3] X_16237192_SNP [dm6]	T	C	9.863e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
3L	1002042	3L_1002042_SNP [dm3] 3L_1002042_SNP [dm6]	C	A	9.878e^-4	1	INTRON trio
2L	16569875	2L_16569875_SNP [dm3] 2L_16569875_SNP [dm6]	T	C	9.887e^-4	1	INTRON CG42389
3R	17825586	3R_17825586_SNP [dm3] 3R_21999864_SNP [dm6]	C	T	9.890e^-4	1	INTRON Eip93F
3R	17825703	3R_17825703_SNP [dm3] 3R_21999981_SNP [dm6]	T	C	9.890e^-4	1	INTRON Eip93F
X	2288457	X_2288457_SNP [dm3] X_2394424_SNP [dm6]	T	C	9.904e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	22086624	3L_22086624_SNP [dm3] 3L_22093524_SNP [dm6]	T	C	9.916e^-4	1	INTERGENIC
2L	5846901	2L_5846901_SNP [dm3] 2L_5846901_SNP [dm6]	C	G	9.943e^-4	1	INTRON TrissinR
X	15173001	X_15173001_SNP [dm3] X_15278968_SNP [dm6]	T	A	9.958e^-4	1	INTERGENIC
2R	7376323	2R_7376323_SNP [dm3] 2R_11488818_SNP [dm6]	G	T	9.963e^-4	1	INTRON inv
2L	10782079	2L_10782079_SNP [dm3] 2L_10782079_SNP [dm6]	C	A	9.969e^-4	1	INTRON CG31869
2L	1215940	2L_1215940_SNP [dm3] 2L_1215940_SNP [dm6]	A	C	9.975e^-4	1	UPSTREAM CR45346 DOWNSTREAM CR43263 INTERGENIC

Missing results

By genomic position
Variant impact
Gene name

pc_Deletion_PElem_GC phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results