DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.311e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.008465

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	5.9997	0.0498

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1709 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	12282638	3L_12282638_SNP [dm3] 3L_12289538_SNP [dm6]	A	T	1.765e^-7	0.093	EXON CR45658
3L	12282646	3L_12282646_SNP [dm3] 3L_12289546_SNP [dm6]	G	T	1.765e^-7	0.093	EXON CR45658
3L	12282655	3L_12282655_SNP [dm3] 3L_12289555_SNP [dm6]	G	T	1.765e^-7	0.093	EXON CR45658
3L	2335765	3L_2335765_SNP [dm3] 3L_2335765_SNP [dm6]	C	A	2.052e^-7	0.093	INTRON MsR1
3L	12282654	3L_12282654_SNP [dm3] 3L_12289554_SNP [dm6]	C	G	3.107e^-7	0.113	EXON CR45658
3L	10396532	3L_10396532_SNP [dm3] 3L_10403432_SNP [dm6]	C	A	5.092e^-7	0.154	INTERGENIC
3L	21968433	3L_21968433_SNP [dm3] 3L_21975333_SNP [dm6]	A	G	1.246e^-6	0.273	INTRON CG7470
3L	2335729	3L_2335729_SNP [dm3] 3L_2335729_SNP [dm6]	T	G	1.288e^-6	0.273	INTRON MsR1
3L	12282614	3L_12282614_SNP [dm3] 3L_12289514_SNP [dm6]	C	T	1.351e^-6	0.273	EXON CR45658
3L	7411553	3L_7411553_SNP [dm3] 3L_7418453_SNP [dm6]	A	G	2.107e^-6	0.377	INTERGENIC
3L	7411563	3L_7411563_SNP [dm3] 3L_7418463_SNP [dm6]	G	A	2.284e^-6	0.377	INTERGENIC
3L	10396510	3L_10396510_SNP [dm3] 3L_10403410_SNP [dm6]	T	A	3.590e^-6	0.543	INTERGENIC
2R	11900270	2R_11900270_SNP [dm3] 2R_16012765_SNP [dm6]	A	G	4.889e^-6	0.626	SYNONYMOUS_CODING CG8389	TF binding site BDTNP1_TFBS_sna
X	12388124	X_12388124_SNP [dm3] X_12494091_SNP [dm6]	C	G	5.168e^-6	0.626	DOWNSTREAM Mks1 INTERGENIC
X	12388126	X_12388126_SNP [dm3] X_12494093_SNP [dm6]	A	T	5.168e^-6	0.626	DOWNSTREAM Mks1 INTERGENIC
3R	22527085	3R_22527085_SNP [dm3] 3R_26701363_SNP [dm6]	A	T	6.524e^-6	0.673	INTRON amon
2R	18600700	2R_18600700_SNP [dm3] 2R_22713195_SNP [dm6]	T	C	6.692e^-6	0.673	SYNONYMOUS_CODING CG30268 DOWNSTREAM CG30275
3R	6492186	3R_6492186_SNP [dm3] 3R_10666464_SNP [dm6]	G	A	7.558e^-6	0.673	INTERGENIC
3L	11208724	3L_11208724_SNP [dm3] 3L_11215624_SNP [dm6]	A	T	7.932e^-6	0.673	UPSTREAM CG42671 INTRON CG42671	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	12387047	X_12387047_SNP [dm3] X_12493014_SNP [dm6]	A	C	8.857e^-6	0.673	DOWNSTREAM Lsp1alpha INTERGENIC
2L	10194988	2L_10194988_DEL [dm3] 2L_10194988_DEL [dm6]	GTT	AA	8.901e^-6	0.673	SPLICE_SITE_REGION Sur INTRON Sur
2L	4343818	2L_4343818_SNP [dm3] 2L_4343818_SNP [dm6]	C	G	8.947e^-6	0.673	SYNONYMOUS_CODING Atet DOWNSTREAM mir-1005	TF binding site mE1_TFBS_inv
3L	3720208	3L_3720208_SNP [dm3] 3L_3720208_SNP [dm6]	G	C	9.456e^-6	0.673	INTRON CG32264
3R	26394899	3R_26394899_SNP [dm3] 3R_30569177_SNP [dm6]	G	C	9.564e^-6	0.673	INTRON tmod	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26394906	3R_26394906_SNP [dm3] 3R_30569184_SNP [dm6]	T	C	9.564e^-6	0.673	INTRON tmod	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11900267	2R_11900267_SNP [dm3] 2R_16012762_SNP [dm6]	G	C	1.025e^-5	0.673	SYNONYMOUS_CODING CG8389	TF binding site BDTNP1_TFBS_sna
3L	11208027	3L_11208027_SNP [dm3] 3L_11214927_SNP [dm6]	A	G	1.184e^-5	0.673	UPSTREAM CG42671 DOWNSTREAM CG7600 INTRON CG42671	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_Kr mE1_TFBS_Trl
X	12387044	X_12387044_SNP [dm3] X_12493011_SNP [dm6]	G	T	1.206e^-5	0.673	DOWNSTREAM Lsp1alpha INTERGENIC
X	12387064	X_12387064_SNP [dm3] X_12493031_SNP [dm6]	G	T	1.206e^-5	0.673	DOWNSTREAM Lsp1alpha INTERGENIC
X	12387065	X_12387065_SNP [dm3] X_12493032_SNP [dm6]	C	T	1.206e^-5	0.673	DOWNSTREAM Lsp1alpha INTERGENIC
X	12387069	X_12387069_SNP [dm3] X_12493036_SNP [dm6]	T	G	1.206e^-5	0.673	DOWNSTREAM Lsp1alpha INTERGENIC
X	12387073	X_12387073_SNP [dm3] X_12493040_SNP [dm6]	A	T	1.206e^-5	0.673	DOWNSTREAM Lsp1alpha INTERGENIC
3L	11715659	3L_11715659_SNP [dm3] 3L_11722559_SNP [dm6]	G	A	1.305e^-5	0.673	INTRON Bmcp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11208359	3L_11208359_SNP [dm3] 3L_11215259_SNP [dm6]	C	G	1.323e^-5	0.673	UPSTREAM CG42671 INTRON CG42671	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_Kr mE1_TFBS_Trl
3L	21968126	3L_21968126_SNP [dm3] 3L_21975026_SNP [dm6]	T	A	1.383e^-5	0.673	INTRON CG7470
3L	21968129	3L_21968129_SNP [dm3] 3L_21975029_SNP [dm6]	T	C	1.383e^-5	0.673	INTRON CG7470
3L	21968130	3L_21968130_SNP [dm3] 3L_21975030_SNP [dm6]	G	A	1.383e^-5	0.673	INTRON CG7470
3L	11208193	3L_11208193_SNP [dm3] 3L_11215093_SNP [dm6]	C	G	1.467e^-5	0.673	UPSTREAM CG42671 DOWNSTREAM CG7600 INTRON CG42671	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_Kr mE1_TFBS_Trl
3L	16052921	3L_16052921_SNP [dm3] 3L_16059821_SNP [dm6]	T	A	1.476e^-5	0.673	INTRON Mbs
3L	13277467	3L_13277467_SNP [dm3] 3L_13284367_SNP [dm6]	C	T	1.514e^-5	0.673	DOWNSTREAM CR43146 & 1 other EXON CR43913
3L	9309606	3L_9309606_SNP [dm3] 3L_9316506_SNP [dm6]	C	G	1.520e^-5	0.673	INTERGENIC
3L	11192359	3L_11192359_SNP [dm3] 3L_11199259_SNP [dm6]	C	T	1.556e^-5	0.673	SPLICE_SITE_REGION Plod UPSTREAM CG7607 INTRON Plod	TF binding site mE1_TFBS_sens
3L	3720223	3L_3720223_SNP [dm3] 3L_3720223_SNP [dm6]	T	C	1.604e^-5	0.677	INTRON CG32264
3L	2559800	3L_2559800_SNP [dm3] 3L_2559800_SNP [dm6]	G	A	1.724e^-5	0.699	INTRON msn
X	12388723	X_12388723_SNP [dm3] X_12494690_SNP [dm6]	A	G	1.731e^-5	0.699	SYNONYMOUS_CODING Mks1
3L	8127098	3L_8127098_SNP [dm3] 3L_8133998_SNP [dm6]	A	T	1.830e^-5	0.723	INTRON CG7504
3L	8958470	3L_8958470_SNP [dm3] 3L_8965370_SNP [dm6]	G	A	1.882e^-5	0.728	SYNONYMOUS_CODING CG5653 UPSTREAM CG5660	TF binding site mE1_TFBS_chinmo
3L	18270020	3L_18270020_INS [dm3] 3L_18276920_INS [dm6]	T	TT	2.053e^-5	0.762	INTERGENIC
3R	27612051	3R_27612051_SNP [dm3] 3R_31786329_SNP [dm6]	A	T	2.084e^-5	0.762	INTRON faf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10022362	3L_10022362_SNP [dm3] 3L_10029262_SNP [dm6]	C	A	2.096e^-5	0.762	DOWNSTREAM CR45155 INTRON dpr6
2L	3659330	2L_3659330_SNP [dm3] 2L_3659330_SNP [dm6]	A	G	2.161e^-5	0.77	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	13063145	3R_13063145_SNP [dm3] 3R_17237423_SNP [dm6]	T	C	2.242e^-5	0.783	INTRON beat-IIb
X	12388116	X_12388116_SNP [dm3] X_12494083_SNP [dm6]	G	A	2.364e^-5	0.81	DOWNSTREAM Mks1 INTERGENIC
X	12387048	X_12387048_SNP [dm3] X_12493015_SNP [dm6]	A	T	2.480e^-5	0.818	DOWNSTREAM Lsp1alpha INTERGENIC
X	12765438	X_12765438_SNP [dm3] X_12871405_SNP [dm6]	T	G	2.501e^-5	0.818	INTRON Pde9	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	18245214	3L_18245214_SNP [dm3] 3L_18252114_SNP [dm6]	C	T	2.522e^-5	0.818	SYNONYMOUS_CODING CheA75a
2R	11900136	2R_11900136_SNP [dm3] 2R_16012631_SNP [dm6]	A	C	2.654e^-5	0.833	INTRON CG8389	TF binding site BDTNP1_TFBS_sna
X	18732115	X_18732115_SNP [dm3] X_18838082_SNP [dm6]	A	G	2.744e^-5	0.833	NON_SYNONYMOUS_CODING Pvf1 SPLICE_SITE_REGION Pvf1 INTRON Pvf1
2L	7559183	2L_7559183_SNP [dm3] 2L_7559183_SNP [dm6]	C	A	2.745e^-5	0.833	INTRON RapGAP1
2R	16059546	2R_16059546_SNP [dm3] 2R_20172041_SNP [dm6]	G	A	2.752e^-5	0.833	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	22527082	3R_22527082_SNP [dm3] 3R_26701360_SNP [dm6]	G	A	2.823e^-5	0.841	INTRON amon
3R	5726399	3R_5726399_SNP [dm3] 3R_9900677_SNP [dm6]	C	T	2.955e^-5	0.85	INTRON Glut4EF
3L	3720162	3L_3720162_INS [dm3] 3L_3720162_INS [dm6]	T	TCC	3.000e^-5	0.85	INTRON CG32264
X	10343184	X_10343184_SNP [dm3] X_10449151_SNP [dm6]	C	T	3.059e^-5	0.85	INTRON CG32683
X	4839708	X_4839708_SNP [dm3] X_4945675_SNP [dm6]	C	G	3.200e^-5	0.85	INTRON Ptp4E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	19994325	X_19994325_SNP [dm3] X_20100292_SNP [dm6]	G	A	3.223e^-5	0.85	INTERGENIC	transposable element FlyBase
X	12388447	X_12388447_DEL [dm3] X_12494414_DEL [dm6]	TA	T	3.296e^-5	0.85	UTR_3_PRIME Mks1
2L	10072746	2L_10072746_SNP [dm3] 2L_10072746_SNP [dm6]	T	G	3.324e^-5	0.85	INTRON CG44153	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	8127065	3L_8127065_SNP [dm3] 3L_8133965_SNP [dm6]	T	C	3.333e^-5	0.85	SYNONYMOUS_CODING CG7504
2R	12572245	2R_12572245_DEL [dm3] 2R_16684740_DEL [dm6]	AGTAGTTTCCAA...	A	3.400e^-5	0.85	UPSTREAM CG30463 INTRON CG30463
3L	16052983	3L_16052983_SNP [dm3] 3L_16059883_SNP [dm6]	T	C	3.445e^-5	0.85	INTRON Mbs
3L	12282492	3L_12282492_SNP [dm3] 3L_12289392_SNP [dm6]	C	G	3.465e^-5	0.85	EXON CR45658
3L	12282496	3L_12282496_SNP [dm3] 3L_12289396_SNP [dm6]	C	T	3.465e^-5	0.85	EXON CR45658
3L	13277124	3L_13277124_SNP [dm3] 3L_13284024_SNP [dm6]	A	G	3.510e^-5	0.85	DOWNSTREAM CR43146 INTRON CR43913
X	4690315	X_4690315_SNP [dm3] X_4796282_SNP [dm6]	G	A	3.510e^-5	0.85	DOWNSTREAM CG2861 INTERGENIC
3L	1002042	3L_1002042_SNP [dm3] 3L_1002042_SNP [dm6]	C	A	3.560e^-5	0.851	INTRON trio
X	13349755	X_13349755_SNP [dm3] X_13455722_SNP [dm6]	A	G	3.812e^-5	0.885	DOWNSTREAM CG34324 INTRON Neto
2L	3659304	2L_3659304_SNP [dm3] 2L_3659304_SNP [dm6]	T	A	3.849e^-5	0.885	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	2712404	X_2712404_SNP [dm3] X_2818371_SNP [dm6]	C	G	3.850e^-5	0.885	INTRON kirre
2R	17315450	2R_17315450_SNP [dm3] 2R_21427945_SNP [dm6]	A	G	3.898e^-5	0.885	INTRON Sdc
3L	2335692	3L_2335692_SNP [dm3] 3L_2335692_SNP [dm6]	T	C	4.103e^-5	0.888	INTRON MsR1
2L	7558758	2L_7558758_SNP [dm3] 2L_7558758_SNP [dm6]	C	T	4.120e^-5	0.888	INTRON RapGAP1
3R	5720560	3R_5720560_DEL [dm3] 3R_9894838_DEL [dm6]	CCCAGTTTTGAAATCGC...	C	4.160e^-5	0.888	INTRON Glut4EF	TF binding site mE1_TFBS_inv
2L	3659359	2L_3659359_SNP [dm3] 2L_3659359_SNP [dm6]	A	T	4.260e^-5	0.888	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	3659371	2L_3659371_SNP [dm3] 2L_3659371_SNP [dm6]	C	A	4.260e^-5	0.888	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	22527071	3R_22527071_INS [dm3] 3R_26701349_INS [dm6]	A	ACATACATA	4.290e^-5	0.888	INTRON amon
2R	13508698	2R_13508698_SNP [dm3] 2R_17621193_SNP [dm6]	C	T	4.422e^-5	0.888	INTRON CG10936
3R	23479462	3R_23479462_SNP [dm3] 3R_27653740_SNP [dm6]	G	A	4.446e^-5	0.888	DOWNSTREAM RpS10a INTRON tau
X	6758820	X_6758820_DEL [dm3] X_6864787_DEL [dm6]	TGAGTTTTAACTG...	T	4.499e^-5	0.888	INTRON CG14434 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	16337711	3R_16337711_SNP [dm3] 3R_20511989_SNP [dm6]	T	G	4.549e^-5	0.888	INTRON CG4288	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	16337724	3R_16337724_SNP [dm3] 3R_20512002_SNP [dm6]	C	T	4.549e^-5	0.888	INTRON CG4288	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	17299361	X_17299361_SNP [dm3] X_17405328_SNP [dm6]	T	C	4.564e^-5	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11715678	3L_11715678_SNP [dm3] 3L_11722578_SNP [dm6]	T	C	4.645e^-5	0.888	INTRON Bmcp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	4614305	2R_4614305_INS [dm3] 2R_8726800_INS [dm6]	T	CCCA	4.692e^-5	0.888	INTRON gcl
2L	15795162	2L_15795162_SNP [dm3] 2L_15795162_SNP [dm6]	G	T	4.734e^-5	0.888	INTERGENIC
2L	7559398	2L_7559398_SNP [dm3] 2L_7559398_SNP [dm6]	A	T	4.864e^-5	0.888	INTRON RapGAP1
2L	7559404	2L_7559404_SNP [dm3] 2L_7559404_SNP [dm6]	T	A	4.864e^-5	0.888	INTRON RapGAP1
2L	7559419	2L_7559419_SNP [dm3] 2L_7559419_SNP [dm6]	T	A	4.864e^-5	0.888	INTRON RapGAP1
2R	16621768	2R_16621768_SNP [dm3] 2R_20734263_SNP [dm6]	T	C	4.864e^-5	0.888	INTRON dpr
2R	3022198	2R_3022198_SNP [dm3] 2R_7134693_SNP [dm6]	G	A	4.894e^-5	0.888	EXON CR44443
2R	6327545	2R_6327545_SNP [dm3] 2R_10440040_SNP [dm6]	T	C	5.028e^-5	0.888	INTRON Galphao	TF binding site BDTNP1_TFBS_twi
3R	11956745	3R_11956745_SNP [dm3] 3R_16131023_SNP [dm6]	G	A	5.109e^-5	0.888	INTRON Sb
2L	6425687	2L_6425687_SNP [dm3] 2L_6425687_SNP [dm6]	G	T	5.149e^-5	0.888	INTRON Fic	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	6425786	2L_6425786_SNP [dm3] 2L_6425786_SNP [dm6]	T	C	5.149e^-5	0.888	SYNONYMOUS_CODING Fic DOWNSTREAM CG9527	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	5487627	2R_5487627_SNP [dm3] 2R_9600122_SNP [dm6]	G	A	5.202e^-5	0.888	SYNONYMOUS_CODING CG30340 UPSTREAM clos DOWNSTREAM CG30338 INTRON CG1902
2R	5487630	2R_5487630_SNP [dm3] 2R_9600125_SNP [dm6]	G	A	5.202e^-5	0.888	SYNONYMOUS_CODING CG30340 UPSTREAM clos DOWNSTREAM CG30338 INTRON CG1902
3L	10699681	3L_10699681_SNP [dm3] 3L_10706581_SNP [dm6]	A	G	5.228e^-5	0.888	INTERGENIC
2R	6746350	2R_6746350_SNP [dm3] 2R_10858845_SNP [dm6]	T	G	5.321e^-5	0.89	UPSTREAM CR44302 INTRON CG30015
3L	13302289	3L_13302289_SNP [dm3] 3L_13309189_SNP [dm6]	T	C	5.342e^-5	0.89	INTERGENIC
2R	10313298	2R_10313298_SNP [dm3] 2R_14425793_SNP [dm6]	A	T	5.512e^-5	0.892	INTERGENIC
2R	4273825	2R_4273825_SNP [dm3] 2R_8386320_SNP [dm6]	A	G	5.550e^-5	0.892	INTRON pdm3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18042429	3R_18042429_SNP [dm3] 3R_22216707_SNP [dm6]	T	C	5.552e^-5	0.892	UTR_3_PRIME Gld2 INTRON SKIP
3L	10699839	3L_10699839_SNP [dm3] 3L_10706739_SNP [dm6]	T	G	5.684e^-5	0.892	INTERGENIC
2L	15325079	2L_15325079_SNP [dm3] 2L_15325079_SNP [dm6]	A	G	5.710e^-5	0.892	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	15785599	3R_15785599_SNP [dm3] 3R_19959877_SNP [dm6]	G	A	5.727e^-5	0.892	INTRON Hs6st
3R	15785639	3R_15785639_SNP [dm3] 3R_19959917_SNP [dm6]	C	A	5.727e^-5	0.892	INTRON Hs6st
3R	7971783	3R_7971783_SNP [dm3] 3R_12146061_SNP [dm6]	G	A	5.773e^-5	0.892	INTRON dpr15
2R	4614301	2R_4614301_SNP [dm3] 2R_8726796_SNP [dm6]	A	C	5.796e^-5	0.892	INTRON gcl
2R	4269720	2R_4269720_SNP [dm3] 2R_8382215_SNP [dm6]	A	G	5.967e^-5	0.907	INTRON pdm3
2R	6037580	2R_6037580_SNP [dm3] 2R_10150075_SNP [dm6]	T	G	5.990e^-5	0.907	INTRON KCNQ
3R	7338747	3R_7338747_SNP [dm3] 3R_11513025_SNP [dm6]	C	T	6.079e^-5	0.912	INTERGENIC
2L	3990486	2L_3990486_SNP [dm3] 2L_3990486_SNP [dm6]	T	G	6.122e^-5	0.912	INTRON fred	TF binding site mE1_TFBS_cad
3L	18269874	3L_18269874_SNP [dm3] 3L_18276774_SNP [dm6]	T	G	6.289e^-5	0.915	INTERGENIC
3L	7411587	3L_7411587_SNP [dm3] 3L_7418487_SNP [dm6]	A	T	6.297e^-5	0.915	INTERGENIC
3L	7411594	3L_7411594_SNP [dm3] 3L_7418494_SNP [dm6]	C	T	6.297e^-5	0.915	INTERGENIC
3L	6318612	3L_6318612_SNP [dm3] 3L_6325512_SNP [dm6]	T	A	6.395e^-5	0.922	UPSTREAM Or65b INTERGENIC
2L	21381984	2L_21381984_SNP [dm3] 2L_21381984_SNP [dm6]	A	C	6.508e^-5	0.931	INTRON nrv3
X	4761076	X_4761076_DEL [dm3] X_4867043_DEL [dm6]	AAA	A	6.619e^-5	0.934	INTRON CG42594
3R	13062827	3R_13062827_SNP [dm3] 3R_17237105_SNP [dm6]	T	A	6.635e^-5	0.934	INTRON beat-IIb
2L	9571456	2L_9571456_SNP [dm3] 2L_9571456_SNP [dm6]	A	T	6.773e^-5	0.945	INTRON CG3838
2L	9822048	2L_9822048_SNP [dm3] 2L_9822048_SNP [dm6]	G	C	6.815e^-5	0.945	INTRON nAChRalpha6
3R	13063674	3R_13063674_SNP [dm3] 3R_17237952_SNP [dm6]	C	A	7.058e^-5	0.951	INTRON beat-IIb
X	6752571	X_6752571_SNP [dm3] X_6858538_SNP [dm6]	A	G	7.182e^-5	0.951	INTRON CG14434	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	14010392	2L_14010392_SNP [dm3] 2L_14010392_SNP [dm6]	G	A	7.187e^-5	0.951	DOWNSTREAM tRNA:Q:34E INTERGENIC
2L	14056708	2L_14056708_SNP [dm3] 2L_14056708_SNP [dm6]	T	A	7.200e^-5	0.951	INTRON nAChRalpha5
3R	9799511	3R_9799511_SNP [dm3] 3R_13973789_SNP [dm6]	A	G	7.290e^-5	0.951	INTRON rdx & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18732046	X_18732046_SNP [dm3] X_18838013_SNP [dm6]	G	A	7.295e^-5	0.951	UTR_5_PRIME Pvf1 INTRON Pvf1
X	10343164	X_10343164_DEL [dm3] X_10449131_DEL [dm6]	TTCGCAT	T	7.316e^-5	0.951	INTRON CG32683
3R	18903945	3R_18903945_SNP [dm3] 3R_23078223_SNP [dm6]	G	T	7.342e^-5	0.951	INTRON CG13830
2R	14926421	2R_14926421_SNP [dm3] 2R_19038916_SNP [dm6]	C	T	7.350e^-5	0.951	INTERGENIC
2L	16463311	2L_16463311_SNP [dm3] 2L_16463311_SNP [dm6]	G	C	7.382e^-5	0.951	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11881186	3L_11881186_SNP [dm3] 3L_11888086_SNP [dm6]	G	A	7.470e^-5	0.956	SYNONYMOUS_CODING CG5897 INTRON CG44837
2L	6423704	2L_6423704_SNP [dm3] 2L_6423704_SNP [dm6]	G	A	7.700e^-5	0.975	UPSTREAM Tig & 1 other INTERGENIC
3L	12587747	3L_12587747_SNP [dm3] 3L_12594647_SNP [dm6]	C	T	7.823e^-5	0.975	SYNONYMOUS_CODING ara	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14187640	2R_14187640_SNP [dm3] 2R_18300135_SNP [dm6]	A	C	7.842e^-5	0.975	DOWNSTREAM CG18540 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2712408	X_2712408_SNP [dm3] X_2818375_SNP [dm6]	A	G	7.975e^-5	0.975	INTRON kirre
3L	8127047	3L_8127047_SNP [dm3] 3L_8133947_SNP [dm6]	G	T	8.024e^-5	0.975	SYNONYMOUS_CODING CG7504
2L	6951194	2L_6951194_SNP [dm3] 2L_6951194_SNP [dm6]	A	T	8.160e^-5	0.975	SYNONYMOUS_CODING SA UPSTREAM Gas41	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	6386971	2R_6386971_SNP [dm3] 2R_10499466_SNP [dm6]	A	T	8.170e^-5	0.975	DOWNSTREAM lola INTRON lola
3L	16053008	3L_16053008_SNP [dm3] 3L_16059908_SNP [dm6]	T	C	8.211e^-5	0.975	INTRON Mbs
X	3753167	X_3753167_SNP [dm3] X_3859134_SNP [dm6]	A	G	8.580e^-5	0.975	EXON roX1
X	18387148	X_18387148_SNP [dm3] X_18493115_SNP [dm6]	T	A	8.633e^-5	0.975	DOWNSTREAM CG15043 INTERGENIC
X	19994342	X_19994342_SNP [dm3] X_20100309_SNP [dm6]	G	T	8.795e^-5	0.975	INTERGENIC	transposable element FlyBase
X	19994994	X_19994994_SNP [dm3] X_20100961_SNP [dm6]	C	G	8.795e^-5	0.975	INTERGENIC	transposable element FlyBase
3L	9085230	3L_9085230_SNP [dm3] 3L_9092130_SNP [dm6]	T	C	8.977e^-5	0.975	UTR_3_PRIME Tequila UPSTREAM CG32032
3L	9085232	3L_9085232_SNP [dm3] 3L_9092132_SNP [dm6]	C	A	8.977e^-5	0.975	UPSTREAM CG32032 DOWNSTREAM Tequila INTERGENIC
3R	14356053	3R_14356053_SNP [dm3] 3R_18530331_SNP [dm6]	T	C	9.143e^-5	0.975	INTRON fru
3R	27259773	3R_27259773_SNP [dm3] 3R_31434051_SNP [dm6]	T	A	9.200e^-5	0.975	INTRON Gprk2
3L	16052940	3L_16052940_SNP [dm3] 3L_16059840_SNP [dm6]	G	A	9.257e^-5	0.975	INTRON Mbs
X	10031049	X_10031049_SNP [dm3] X_10137016_SNP [dm6]	G	A	9.361e^-5	0.975	INTRON CR44894 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20434551	X_20434551_SNP [dm3] X_20563524_SNP [dm6]	C	A	9.412e^-5	0.975	INTRON RunxB
3L	18304828	3L_18304828_SNP [dm3] 3L_18311728_SNP [dm6]	A	G	9.760e^-5	0.975	INTERGENIC
3L	10396223	3L_10396223_INS [dm3] 3L_10403123_INS [dm6]	G	GA	9.816e^-5	0.975	INTERGENIC
3L	12815902	3L_12815902_SNP [dm3] 3L_12822802_SNP [dm6]	A	G	9.994e^-5	0.975	NON_SYNONYMOUS_CODING CG42588
X	4839651	X_4839651_SNP [dm3] X_4945618_SNP [dm6]	C	T	1.003e^-4	0.975	INTRON Ptp4E	TF binding site BDTNP1_TFBS_dl
2L	9582539	2L_9582539_SNP [dm3] 2L_9582539_SNP [dm6]	A	G	1.009e^-4	0.975	UPSTREAM gcm INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
2L	9582546	2L_9582546_SNP [dm3] 2L_9582546_SNP [dm6]	T	A	1.009e^-4	0.975	UPSTREAM gcm INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
2L	9582550	2L_9582550_SNP [dm3] 2L_9582550_SNP [dm6]	A	G	1.009e^-4	0.975	UPSTREAM gcm INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
2L	381587	2L_381587_SNP [dm3] 2L_381587_SNP [dm6]	C	G	1.024e^-4	0.975	INTRON al	TF binding site mE1_TFBS_HSA
X	3753160	X_3753160_SNP [dm3] X_3859127_SNP [dm6]	C	A	1.025e^-4	0.975	EXON roX1
2R	18292034	2R_18292034_SNP [dm3] 2R_22404529_SNP [dm6]	C	T	1.029e^-4	0.975	INTRON CG6044	TF binding site BDTNP1_TFBS_dl
2L	9582553	2L_9582553_SNP [dm3] 2L_9582553_SNP [dm6]	G	A	1.033e^-4	0.975	UPSTREAM gcm INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
2L	15736167	2L_15736167_SNP [dm3] 2L_15736167_SNP [dm6]	T	C	1.037e^-4	0.975	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4280834	2R_4280834_SNP [dm3] 2R_8393329_SNP [dm6]	G	C	1.053e^-4	0.975	INTRON pdm3	TF binding site mE1_TFBS_cad
2R	18294779	2R_18294779_SNP [dm3] 2R_22407274_SNP [dm6]	C	G	1.053e^-4	0.975	NON_SYNONYMOUS_CODING CG6044	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	21968136	3L_21968136_DEL [dm3] 3L_21975036_DEL [dm6]	AA	A	1.063e^-4	0.975	INTRON CG7470
3L	7411392	3L_7411392_SNP [dm3] 3L_7418292_SNP [dm6]	C	A	1.066e^-4	0.975	INTERGENIC
3R	25600419	3R_25600419_SNP [dm3] 3R_29774697_SNP [dm6]	A	G	1.067e^-4	0.975	INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	8126903	3L_8126903_SNP [dm3] 3L_8133803_SNP [dm6]	C	A	1.084e^-4	0.975	INTRON CG7504
X	19646096	X_19646096_SNP [dm3] X_19752063_SNP [dm6]	G	A	1.091e^-4	0.975	INTRON Pmp70	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	15938223	3L_15938223_SNP [dm3] 3L_15945123_SNP [dm6]	A	G	1.095e^-4	0.975	INTRON Pka-C3
2R	19702944	2R_19702944_INS [dm3] 2R_23815421_INS [dm6]	A	AA	1.131e^-4	0.975	DOWNSTREAM CR44807 INTRON CG4797
2R	19702953	2R_19702953_SNP [dm3] 2R_23815430_SNP [dm6]	T	A	1.131e^-4	0.975	DOWNSTREAM CR44807 INTRON CG4797
2R	19702955	2R_19702955_SNP [dm3] 2R_23815432_SNP [dm6]	C	T	1.131e^-4	0.975	DOWNSTREAM CR44807 INTRON CG4797
2L	20825408	2L_20825408_SNP [dm3] 2L_20825408_SNP [dm6]	A	T	1.136e^-4	0.975	UTR_5_PRIME CG9331 UPSTREAM CG9331 INTRON CG9331	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	6320249	3L_6320249_SNP [dm3] 3L_6327149_SNP [dm6]	A	T	1.145e^-4	0.975	UPSTREAM Or65c DOWNSTREAM Or65b INTERGENIC
2R	5150471	2R_5150471_SNP [dm3] 2R_9262966_SNP [dm6]	C	A	1.146e^-4	0.975	UTR_5_PRIME CG34141 INTRON Pkn	TF binding site mE1_TFBS_cad
2L	14962559	2L_14962559_SNP [dm3] 2L_14962559_SNP [dm6]	T	A	1.148e^-4	0.975	INTRON CG42313
3R	25778123	3R_25778123_SNP [dm3] 3R_29952401_SNP [dm6]	A	G	1.151e^-4	0.975	INTRON TkR99D	TF binding site mE1_TFBS_chinmo
3L	7002889	3L_7002889_SNP [dm3] 3L_7009789_SNP [dm6]	G	T	1.156e^-4	0.975	INTRON Mp
2R	4614289	2R_4614289_DEL [dm3] 2R_8726784_DEL [dm6]	CTTAATTA	C	1.157e^-4	0.975	INTRON gcl
3L	6318993	3L_6318993_SNP [dm3] 3L_6325893_SNP [dm6]	G	A	1.161e^-4	0.975	SYNONYMOUS_CODING Or65b
3L	6319096	3L_6319096_SNP [dm3] 3L_6325996_SNP [dm6]	T	A	1.161e^-4	0.975	SPLICE_SITE_REGION Or65b INTRON Or65b
2R	10998820	2R_10998820_SNP [dm3] 2R_15111315_SNP [dm6]	A	G	1.168e^-4	0.975	INTERGENIC
3R	16709393	3R_16709393_SNP [dm3] 3R_20883671_SNP [dm6]	T	C	1.171e^-4	0.975	INTERGENIC
2L	22099807	2L_22099807_SNP [dm3] 2L_22099807_SNP [dm6]	T	C	1.174e^-4	0.975	INTERGENIC
2L	22099816	2L_22099816_SNP [dm3] 2L_22099816_SNP [dm6]	C	A	1.174e^-4	0.975	INTERGENIC
2L	22099817	2L_22099817_SNP [dm3] 2L_22099817_SNP [dm6]	A	T	1.174e^-4	0.975	INTERGENIC
2R	6797535	2R_6797535_SNP [dm3] 2R_10910030_SNP [dm6]	A	C	1.183e^-4	0.975	INTRON Obp47a
3R	10590482	3R_10590482_SNP [dm3] 3R_14764760_SNP [dm6]	G	C	1.193e^-4	0.975	INTRON jvl
2R	15742241	2R_15742241_SNP [dm3] 2R_19854736_SNP [dm6]	G	A	1.198e^-4	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	13514575	2R_13514575_SNP [dm3] 2R_17627070_SNP [dm6]	G	C	1.201e^-4	0.975	INTRON CG10936
2L	16821864	2L_16821864_SNP [dm3] 2L_16821864_SNP [dm6]	G	A	1.203e^-4	0.975	SYNONYMOUS_CODING Cas UPSTREAM CG13280 INTRON mdy
X	5214920	X_5214920_SNP [dm3] X_5320887_SNP [dm6]	G	A	1.216e^-4	0.975	SYNONYMOUS_CODING Rnp4F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	15785761	3R_15785761_SNP [dm3] 3R_19960039_SNP [dm6]	T	C	1.220e^-4	0.975	INTRON Hs6st
3L	10020953	3L_10020953_SNP [dm3] 3L_10027853_SNP [dm6]	G	C	1.233e^-4	0.975	INTRON dpr6
2R	18285232	2R_18285232_SNP [dm3] 2R_22397727_SNP [dm6]	T	G	1.242e^-4	0.975	INTRON babos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18285233	2R_18285233_SNP [dm3] 2R_22397728_SNP [dm6]	G	C	1.242e^-4	0.975	INTRON babos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18286755	2R_18286755_SNP [dm3] 2R_22399250_SNP [dm6]	C	T	1.242e^-4	0.975	INTRON babos	TF binding site BDTNP1_TFBS_dl
3R	16766186	3R_16766186_SNP [dm3] 3R_20940464_SNP [dm6]	C	T	1.263e^-4	0.975	INTRON CG31191
X	17299324	X_17299324_SNP [dm3] X_17405291_SNP [dm6]	G	A	1.267e^-4	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16037770	3L_16037770_INS [dm3] 3L_16044670_INS [dm6]	A	AA	1.269e^-4	0.975	INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
2R	13355666	2R_13355666_SNP [dm3] 2R_17468161_SNP [dm6]	C	T	1.277e^-4	0.975	SYNONYMOUS_CODING Tes	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3844675	3L_3844675_SNP [dm3] 3L_3844675_SNP [dm6]	A	G	1.277e^-4	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad
2L	17695619	2L_17695619_SNP [dm3] 2L_17695619_SNP [dm6]	A	T	1.278e^-4	0.975	INTRON CadN
3L	9283489	3L_9283489_SNP [dm3] 3L_9290389_SNP [dm6]	G	T	1.284e^-4	0.975	INTERGENIC
3R	17783501	3R_17783501_SNP [dm3] 3R_21957779_SNP [dm6]	A	T	1.313e^-4	0.975	INTRON Eip93F
3R	21095985	3R_21095985_SNP [dm3] 3R_25270263_SNP [dm6]	G	T	1.320e^-4	0.975	SYNONYMOUS_CODING CG11889 START_GAINED CG11891 UTR_5_PRIME CG11891 UPSTREAM CR45214 DOWNSTREAM CR13656
3R	14032536	3R_14032536_SNP [dm3] 3R_18206814_SNP [dm6]	A	G	1.329e^-4	0.975	INTRON CG7985
3R	27203832	3R_27203832_SNP [dm3] 3R_31378110_SNP [dm6]	T	A	1.329e^-4	0.975	INTERGENIC
X	13921356	X_13921356_DEL [dm3] X_14027323_DEL [dm6]	CCC	C	1.330e^-4	0.975	INTERGENIC
2R	15985359	2R_15985359_SNP [dm3] 2R_20097854_SNP [dm6]	G	T	1.331e^-4	0.975	INTERGENIC
2R	15985361	2R_15985361_SNP [dm3] 2R_20097856_SNP [dm6]	G	A	1.331e^-4	0.975	INTERGENIC
X	20435079	X_20435079_SNP [dm3] X_20564052_SNP [dm6]	C	A	1.339e^-4	0.975	INTRON RunxB
2L	9962096	2L_9962096_SNP [dm3] 2L_9962096_SNP [dm6]	G	C	1.346e^-4	0.975	INTRON CG5850 EXON CR43683	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	25600208	3R_25600208_INS [dm3] 3R_29774486_INS [dm6]	G	GG	1.352e^-4	0.975	INTRON kay	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	11385106	3L_11385106_INS [dm3] 3L_11392006_INS [dm6]	A	AGTCA	1.371e^-4	0.975	INTERGENIC
3R	23590042	3R_23590042_SNP [dm3] 3R_27764320_SNP [dm6]	A	T	1.392e^-4	0.975	INTERGENIC
3R	25361696	3R_25361696_SNP [dm3] 3R_29535974_SNP [dm6]	A	G	1.393e^-4	0.975	DOWNSTREAM CR43613 INTERGENIC
3L	18270058	3L_18270058_SNP [dm3] 3L_18276958_SNP [dm6]	T	A	1.398e^-4	0.975	INTERGENIC
3R	25134623	3R_25134623_SNP [dm3] 3R_29308901_SNP [dm6]	C	T	1.398e^-4	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	3977222	2L_3977222_SNP [dm3] 2L_3977222_SNP [dm6]	T	A	1.399e^-4	0.975	INTRON fred
3L	6320588	3L_6320588_SNP [dm3] 3L_6327488_SNP [dm6]	G	T	1.403e^-4	0.975	UPSTREAM Or65c DOWNSTREAM Or65b INTERGENIC
X	4774003	X_4774003_SNP [dm3] X_4879970_SNP [dm6]	T	C	1.406e^-4	0.975	INTRON CG42594
X	15360169	X_15360169_SNP [dm3] X_15466136_SNP [dm6]	A	G	1.409e^-4	0.975	DOWNSTREAM CG15642 INTRON CG6299 & 1 other	TF binding site mE1_TFBS_chinmo
X	17299365	X_17299365_SNP [dm3] X_17405332_SNP [dm6]	T	A	1.422e^-4	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17299370	X_17299370_SNP [dm3] X_17405337_SNP [dm6]	A	G	1.422e^-4	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17299373	X_17299373_SNP [dm3] X_17405340_SNP [dm6]	A	G	1.422e^-4	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17299374	X_17299374_SNP [dm3] X_17405341_SNP [dm6]	C	T	1.422e^-4	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17299378	X_17299378_SNP [dm3] X_17405345_SNP [dm6]	T	A	1.422e^-4	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17299409	X_17299409_SNP [dm3] X_17405376_SNP [dm6]	C	A	1.422e^-4	0.975	INTERGENIC	TF binding site mE1_TFBS_HSA
X	17299427	X_17299427_DEL [dm3] X_17405394_DEL [dm6]	TTTCACATT	T	1.422e^-4	0.975	INTERGENIC
X	5745751	X_5745751_SNP [dm3] X_5851718_SNP [dm6]	G	A	1.422e^-4	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25799922	3R_25799922_SNP [dm3] 3R_29974200_SNP [dm6]	A	C	1.424e^-4	0.975	INTERGENIC
3R	14757031	3R_14757031_INS [dm3] 3R_18931309_INS [dm6]	A	ATA	1.430e^-4	0.975	UTR_5_PRIME CG42613	TF binding site mE1_TFBS_Trl
3R	11551504	3R_11551504_SNP [dm3] 3R_15725782_SNP [dm6]	T	C	1.445e^-4	0.975	INTERGENIC
2R	7817607	2R_7817607_SNP [dm3] 2R_11930102_SNP [dm6]	T	C	1.448e^-4	0.975	UPSTREAM CR44312 INTERGENIC
2R	10690756	2R_10690756_SNP [dm3] 2R_14803251_SNP [dm6]	G	C	1.452e^-4	0.975	INTRON kn	regulatory region REDfly_CRMs
X	11671502	X_11671502_SNP [dm3] X_11777469_SNP [dm6]	A	T	1.459e^-4	0.975	INTRON dy	TF binding site mE1_TFBS_Trl
2L	7096570	2L_7096570_SNP [dm3] 2L_7096570_SNP [dm6]	C	T	1.479e^-4	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
3L	4377285	3L_4377285_INS [dm3] 3L_4377285_INS [dm6]	T	TT	1.500e^-4	0.975	DOWNSTREAM CR44360 INTRON DopEcR
3R	8661900	3R_8661900_SNP [dm3] 3R_12836178_SNP [dm6]	T	C	1.521e^-4	0.975	INTERGENIC
2L	9952131	2L_9952131_SNP [dm3] 2L_9952131_SNP [dm6]	A	G	1.526e^-4	0.975	UTR_3_PRIME CG13126 DOWNSTREAM CG13126	TF binding site mE1_TFBS_inv
3R	16533505	3R_16533505_SNP [dm3] 3R_20707783_SNP [dm6]	A	T	1.535e^-4	0.975	INTRON Oamb
2R	6943437	2R_6943437_SNP [dm3] 2R_11055932_SNP [dm6]	A	G	1.555e^-4	0.975	INTRON luna
2L	10431120	2L_10431120_SNP [dm3] 2L_10431120_SNP [dm6]	T	A	1.591e^-4	0.975	UPSTREAM TfIIB & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	14012526	2L_14012526_SNP [dm3] 2L_14012526_SNP [dm6]	T	G	1.601e^-4	0.975	UPSTREAM bgm INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	25277606	3R_25277606_SNP [dm3] 3R_29451884_SNP [dm6]	T	A	1.604e^-4	0.975	INTRON Ptp99A
3R	16085006	3R_16085006_SNP [dm3] 3R_20259284_SNP [dm6]	C	T	1.607e^-4	0.975	INTRON cic
3L	10396489	3L_10396489_INS [dm3] 3L_10403389_INS [dm6]	T	TTA	1.615e^-4	0.975	INTERGENIC
3R	13969673	3R_13969673_SNP [dm3] 3R_18143951_SNP [dm6]	G	C	1.622e^-4	0.975	INTERGENIC
2L	12034433	2L_12034433_SNP [dm3] 2L_12034433_SNP [dm6]	G	T	1.636e^-4	0.975	NON_SYNONYMOUS_CODING CG18788 DOWNSTREAM dmGlut
2L	12034452	2L_12034452_SNP [dm3] 2L_12034452_SNP [dm6]	A	C	1.636e^-4	0.975	SYNONYMOUS_CODING CG18788 DOWNSTREAM dmGlut
3L	3566365	3L_3566365_SNP [dm3] 3L_3566365_SNP [dm6]	A	G	1.642e^-4	0.975	INTRON Eip63E
3L	11205698	3L_11205698_SNP [dm3] 3L_11212598_SNP [dm6]	G	A	1.651e^-4	0.975	SYNONYMOUS_CODING CG7600	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6425437	2L_6425437_SNP [dm3] 2L_6425437_SNP [dm6]	A	T	1.652e^-4	0.975	INTRON Fic	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	17106762	2L_17106762_SNP [dm3] 2L_17106762_SNP [dm6]	A	G	1.678e^-4	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17211173	3R_17211173_SNP [dm3] 3R_21385451_SNP [dm6]	A	T	1.679e^-4	0.975	INTERGENIC	regulatory region REDfly_CRMs
3L	9974090	3L_9974090_SNP [dm3] 3L_9980990_SNP [dm6]	C	T	1.681e^-4	0.975	INTRON dpr6
2R	4465102	2R_4465102_DEL [dm3] 2R_8577597_DEL [dm6]	TA	T	1.690e^-4	0.975	INTRON CG42326	TF binding site mE1_TFBS_cad
2R	13351480	2R_13351480_SNP [dm3] 2R_17463975_SNP [dm6]	T	A	1.695e^-4	0.975	SYNONYMOUS_CODING CG14478	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	9425477	2R_9425477_SNP [dm3] 2R_13537972_SNP [dm6]	C	T	1.723e^-4	0.975	SYNONYMOUS_CODING CG6145	TF binding site mE1_TFBS_cad
2R	13498018	2R_13498018_SNP [dm3] 2R_17610513_SNP [dm6]	A	G	1.737e^-4	0.975	INTRON CG10936
3L	11050564	3L_11050564_SNP [dm3] 3L_11057464_SNP [dm6]	A	G	1.737e^-4	0.975	INTRON CG7888
2L	9582544	2L_9582544_SNP [dm3] 2L_9582544_SNP [dm6]	A	T	1.739e^-4	0.975	UPSTREAM gcm INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
2R	6202987	2R_6202987_SNP [dm3] 2R_10315482_SNP [dm6]	T	C	1.742e^-4	0.975	INTRON Ndg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	16984519	2R_16984519_SNP [dm3] 2R_21097014_SNP [dm6]	G	A	1.744e^-4	0.975	UPSTREAM CG34396 INTRON CG34396 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	6425696	2L_6425696_SNP [dm3] 2L_6425696_SNP [dm6]	G	A	1.747e^-4	0.975	INTRON Fic	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	3977220	2L_3977220_SNP [dm3] 2L_3977220_SNP [dm6]	T	C	1.751e^-4	0.975	INTRON fred
3R	6423648	3R_6423648_SNP [dm3] 3R_10597926_SNP [dm6]	C	A	1.751e^-4	0.975	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	14329167	3L_14329167_SNP [dm3] 3L_14336067_SNP [dm6]	T	C	1.759e^-4	0.975	INTRON fz
3L	17240409	3L_17240409_DEL [dm3] 3L_17247309_DEL [dm6]	TATAT	C	1.768e^-4	0.975	INTRON CR43870	transposable element FlyBase
3L	8356131	3L_8356131_SNP [dm3] 3L_8363031_SNP [dm6]	T	C	1.788e^-4	0.975	INTERGENIC
3L	13600100	3L_13600100_SNP [dm3] 3L_13607000_SNP [dm6]	G	A	1.794e^-4	0.975	INTRON bru-3
2L	2743809	2L_2743809_SNP [dm3] 2L_2743809_SNP [dm6]	C	T	1.809e^-4	0.975	SYNONYMOUS_CODING CG9961 UTR_3_PRIME CG9961 DOWNSTREAM Hrs	TF binding site mE1_TFBS_sens
2R	19833852	2R_19833852_SNP [dm3] 2R_23946329_SNP [dm6]	T	G	1.814e^-4	0.975	DOWNSTREAM CG13565 INTRON Galphas
3L	12282746	3L_12282746_SNP [dm3] 3L_12289646_SNP [dm6]	A	G	1.821e^-4	0.975	EXON CR45658
2L	16294072	2L_16294072_INS [dm3] 2L_16294072_INS [dm6]	C	CAATAC	1.823e^-4	0.975	UPSTREAM Cyp303a1 & 1 other INTERGENIC
3R	19572363	3R_19572363_SNP [dm3] 3R_23746641_SNP [dm6]	G	A	1.826e^-4	0.975	INTRON Hmgcr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6202963	2R_6202963_SNP [dm3] 2R_10315458_SNP [dm6]	G	A	1.837e^-4	0.975	INTRON Ndg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	3725126	2L_3725126_SNP [dm3] 2L_3725126_SNP [dm6]	A	G	1.846e^-4	0.975	UTR_3_PRIME Shaw INTRON Shaw
3R	13063983	3R_13063983_SNP [dm3] 3R_17238261_SNP [dm6]	A	G	1.859e^-4	0.975	INTRON beat-IIb
3R	24466682	3R_24466682_SNP [dm3] 3R_28640960_SNP [dm6]	G	A	1.870e^-4	0.975	DOWNSTREAM CG14062 INTERGENIC	TF binding site mE1_TFBS_cad
2L	16463332	2L_16463332_SNP [dm3] 2L_16463332_SNP [dm6]	A	G	1.887e^-4	0.975	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6646144	2R_6646144_SNP [dm3] 2R_10758639_SNP [dm6]	G	T	1.908e^-4	0.975	INTRON CG33144
3R	17841313	3R_17841313_SNP [dm3] 3R_22015591_SNP [dm6]	T	C	1.932e^-4	0.975	SYNONYMOUS_CODING CG6332 DOWNSTREAM CG6439	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	6386962	2R_6386962_SNP [dm3] 2R_10499457_SNP [dm6]	G	A	1.934e^-4	0.975	DOWNSTREAM lola INTRON lola
2L	6425710	2L_6425710_SNP [dm3] 2L_6425710_SNP [dm6]	G	T	1.936e^-4	0.975	INTRON Fic	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	8117660	2R_8117660_SNP [dm3] 2R_12230155_SNP [dm6]	G	T	1.941e^-4	0.975	UPSTREAM CG8854 INTERGENIC
3L	5181372	3L_5181372_SNP [dm3] 3L_5188272_SNP [dm6]	A	G	1.963e^-4	0.975	INTRON shep	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	5181377	3L_5181377_SNP [dm3] 3L_5188277_SNP [dm6]	A	C	1.963e^-4	0.975	INTRON shep	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	9582552	2L_9582552_SNP [dm3] 2L_9582552_SNP [dm6]	T	G	1.964e^-4	0.975	UPSTREAM gcm INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
3L	7002900	3L_7002900_SNP [dm3] 3L_7009800_SNP [dm6]	A	G	1.974e^-4	0.975	INTRON Mp
X	12616596	X_12616596_SNP [dm3] X_12722563_SNP [dm6]	A	T	1.978e^-4	0.975	INTRON Smr & 1 other	TF binding site mE1_TFBS_HSA
X	12616618	X_12616618_SNP [dm3] X_12722585_SNP [dm6]	T	G	1.978e^-4	0.975	INTRON Smr & 1 other	TF binding site mE1_TFBS_HSA
2R	6035330	2R_6035330_SNP [dm3] 2R_10147825_SNP [dm6]	C	T	1.980e^-4	0.975	INTRON KCNQ
X	17299328	X_17299328_SNP [dm3] X_17405295_SNP [dm6]	G	T	1.984e^-4	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17299330	X_17299330_SNP [dm3] X_17405297_SNP [dm6]	T	A	1.984e^-4	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4467747	2R_4467747_SNP [dm3] 2R_8580242_SNP [dm6]	C	A	1.987e^-4	0.975	INTRON CG42326
2R	6356822	2R_6356822_SNP [dm3] 2R_10469317_SNP [dm6]	C	T	1.999e^-4	0.975	SYNONYMOUS_CODING CG11777 UPSTREAM Caf1-105 DOWNSTREAM whd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	9310613	3L_9310613_SNP [dm3] 3L_9317513_SNP [dm6]	C	T	2.009e^-4	0.975	INTERGENIC
3L	14577941	3L_14577941_SNP [dm3] 3L_14584841_SNP [dm6]	G	A	2.010e^-4	0.975	INTRON HGTX	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5866810	X_5866810_SNP [dm3] X_5972777_SNP [dm6]	T	C	2.011e^-4	0.975	INTRON Grip
3R	7352056	3R_7352056_SNP [dm3] 3R_11526334_SNP [dm6]	G	A	2.014e^-4	0.975	INTERGENIC
2R	17180802	2R_17180802_SNP [dm3] 2R_21293297_SNP [dm6]	G	C	2.017e^-4	0.975	UPSTREAM RpL29 INTRON Sgf29	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA
2R	4465093	2R_4465093_SNP [dm3] 2R_8577588_SNP [dm6]	G	T	2.028e^-4	0.975	INTRON CG42326	TF binding site mE1_TFBS_cad
3L	2559825	3L_2559825_SNP [dm3] 3L_2559825_SNP [dm6]	T	A	2.031e^-4	0.975	INTRON msn
X	13349715	X_13349715_SNP [dm3] X_13455682_SNP [dm6]	A	G	2.032e^-4	0.975	DOWNSTREAM CG34324 INTRON Neto
2L	16821828	2L_16821828_SNP [dm3] 2L_16821828_SNP [dm6]	C	T	2.045e^-4	0.975	SYNONYMOUS_CODING Cas UPSTREAM CG13280 INTRON mdy
2L	6425717	2L_6425717_SNP [dm3] 2L_6425717_SNP [dm6]	A	C	2.072e^-4	0.975	INTRON Fic	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	2140765	3L_2140765_SNP [dm3] 3L_2140765_SNP [dm6]	A	T	2.085e^-4	0.975	SYNONYMOUS_CODING zormin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17132293	2R_17132293_INS [dm3] 2R_21244788_INS [dm6]	C	CC	2.094e^-4	0.975	INTRON ASPP	TF binding site BDTNP1_TFBS_prd
3L	11093510	3L_11093510_SNP [dm3] 3L_11100410_SNP [dm6]	G	A	2.097e^-4	0.975	DOWNSTREAM Elo68beta INTRON APP-BP1
3R	15785901	3R_15785901_SNP [dm3] 3R_19960179_SNP [dm6]	A	C	2.100e^-4	0.975	INTRON Hs6st
3L	2032075	3L_2032075_SNP [dm3] 3L_2032075_SNP [dm6]	G	A	2.106e^-4	0.975	INTERGENIC
3L	2032135	3L_2032135_SNP [dm3] 3L_2032135_SNP [dm6]	A	C	2.106e^-4	0.975	INTERGENIC
3L	2032147	3L_2032147_SNP [dm3] 3L_2032147_SNP [dm6]	G	A	2.106e^-4	0.975	INTERGENIC
3R	6380614	3R_6380614_SNP [dm3] 3R_10554892_SNP [dm6]	C	G	2.107e^-4	0.975	INTRON hth	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	15785829	3R_15785829_SNP [dm3] 3R_19960107_SNP [dm6]	A	C	2.119e^-4	0.975	INTRON Hs6st
2R	10314300	2R_10314300_SNP [dm3] 2R_14426795_SNP [dm6]	A	G	2.135e^-4	0.975	DOWNSTREAM phyl INTERGENIC
3R	20260844	3R_20260844_SNP [dm3] 3R_24435122_SNP [dm6]	G	C	2.143e^-4	0.975	INTRON nAChRalpha1
3R	15229413	3R_15229413_SNP [dm3] 3R_19403691_SNP [dm6]	A	G	2.144e^-4	0.975	NON_SYNONYMOUS_CODING CG5316 UTR_5_PRIME CG5316 UPSTREAM Ino80	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3R	15229442	3R_15229442_SNP [dm3] 3R_19403720_SNP [dm6]	G	C	2.144e^-4	0.975	NON_SYNONYMOUS_CODING CG5316 UTR_5_PRIME CG5316 UPSTREAM Ino80	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	15985334	2R_15985334_SNP [dm3] 2R_20097829_SNP [dm6]	T	C	2.149e^-4	0.975	INTERGENIC
2L	6388037	2L_6388037_SNP [dm3] 2L_6388037_SNP [dm6]	G	A	2.156e^-4	0.975	INTRON CG42368
X	4838871	X_4838871_SNP [dm3] X_4944838_SNP [dm6]	C	T	2.190e^-4	0.975	INTRON Ptp4E
2L	8010187	2L_8010187_SNP [dm3] 2L_8010187_SNP [dm6]	C	A	2.194e^-4	0.975	NON_SYNONYMOUS_CODING CG34010 UPSTREAM CG12560	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	10709522	2R_10709522_SNP [dm3] 2R_14822017_SNP [dm6]	C	T	2.194e^-4	0.975	INTERGENIC
3R	27203674	3R_27203674_SNP [dm3] 3R_31377952_SNP [dm6]	G	T	2.200e^-4	0.975	INTERGENIC
2L	9582594	2L_9582594_SNP [dm3] 2L_9582594_SNP [dm6]	C	G	2.205e^-4	0.975	UPSTREAM gcm INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
X	4685647	X_4685647_DEL [dm3] X_4791614_DEL [dm6]	CGATGGGC	C	2.216e^-4	0.975	INTERGENIC
2R	13803017	2R_13803017_SNP [dm3] 2R_17915512_SNP [dm6]	G	A	2.220e^-4	0.975	INTRON Elk
2L	14171360	2L_14171360_SNP [dm3] 2L_14171360_SNP [dm6]	A	G	2.223e^-4	0.975	INTRON CG43333
3L	11100507	3L_11100507_SNP [dm3] 3L_11107407_SNP [dm6]	C	G	2.225e^-4	0.975	UTR_5_PRIME CG32073 UPSTREAM CG12522 & 1 other
2R	12115084	2R_12115084_SNP [dm3] 2R_16227579_SNP [dm6]	C	A	2.237e^-4	0.975	INTRON CG15706 & 1 other
3R	14283084	3R_14283084_SNP [dm3] 3R_18457362_SNP [dm6]	T	G	2.241e^-4	0.975	INTRON fru
3R	24541496	3R_24541496_SNP [dm3] 3R_28715774_SNP [dm6]	A	C	2.246e^-4	0.975	INTRON htt	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16044949	3R_16044949_INS [dm3] 3R_20219227_INS [dm6]	A	AATCCATGTT	2.255e^-4	0.975	INTRON Nlg4
3R	5989991	3R_5989991_SNP [dm3] 3R_10164269_SNP [dm6]	G	T	2.258e^-4	0.975	INTRON Best1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	25158666	3R_25158666_SNP [dm3] 3R_29332944_SNP [dm6]	G	A	2.259e^-4	0.975	INTERGENIC
2R	16003097	2R_16003097_SNP [dm3] 2R_20115592_SNP [dm6]	A	G	2.260e^-4	0.975	SYNONYMOUS_CODING 18w	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4273455	2R_4273455_SNP [dm3] 2R_8385950_SNP [dm6]	T	A	2.264e^-4	0.975	INTRON pdm3
2L	14011233	2L_14011233_SNP [dm3] 2L_14011233_SNP [dm6]	C	T	2.264e^-4	0.975	UPSTREAM tRNA:Q:34E INTERGENIC
3L	7002884	3L_7002884_SNP [dm3] 3L_7009784_SNP [dm6]	T	C	2.274e^-4	0.975	INTRON Mp
2L	16822769	2L_16822769_SNP [dm3] 2L_16822769_SNP [dm6]	C	G	2.277e^-4	0.975	SYNONYMOUS_CODING Cas INTRON mdy
3R	25204617	3R_25204617_DEL [dm3] 3R_29378895_DEL [dm6]	GCCG	G	2.282e^-4	0.975	INTRON Ptp99A
3L	18269851	3L_18269851_INS [dm3] 3L_18276751_INS [dm6]	T	TT	2.286e^-4	0.975	INTERGENIC
3L	10020991	3L_10020991_DEL [dm3] 3L_10027891_DEL [dm6]	GAATCCAGAAAACAAGACC...	G	2.301e^-4	0.975	INTRON dpr6
3R	8400796	3R_8400796_SNP [dm3] 3R_12575074_SNP [dm6]	A	G	2.325e^-4	0.975	INTRON Octbeta2R
2L	8010395	2L_8010395_SNP [dm3] 2L_8010395_SNP [dm6]	A	C	2.325e^-4	0.975	UPSTREAM CG12560 INTRON CG34010	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	6178024	X_6178024_SNP [dm3] X_6283991_SNP [dm6]	A	T	2.331e^-4	0.975	UPSTREAM CG11700 DOWNSTREAM Top3beta INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	18544780	3L_18544780_SNP [dm3] 3L_18551680_SNP [dm6]	T	G	2.347e^-4	0.975	INTERGENIC
2L	10173939	2L_10173939_SNP [dm3] 2L_10173939_SNP [dm6]	C	T	2.348e^-4	0.975	SYNONYMOUS_CODING CG13137 INTRON CG44153	TF binding site mE1_TFBS_cad
2L	7233976	2L_7233976_SNP [dm3] 2L_7233976_SNP [dm6]	C	G	2.348e^-4	0.975	INTRON Ndae1
2R	14093005	2R_14093005_SNP [dm3] 2R_18205500_SNP [dm6]	A	G	2.352e^-4	0.975	INTERGENIC
3R	14283012	3R_14283012_SNP [dm3] 3R_18457290_SNP [dm6]	A	G	2.369e^-4	0.975	INTRON fru
2L	9774791	2L_9774791_SNP [dm3] 2L_9774791_SNP [dm6]	A	G	2.372e^-4	0.975	SYNONYMOUS_CODING ppk11	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	17666338	3R_17666338_SNP [dm3] 3R_21840616_SNP [dm6]	T	A	2.374e^-4	0.975	INTERGENIC
3L	6510923	3L_6510923_SNP [dm3] 3L_6517823_SNP [dm6]	G	A	2.387e^-4	0.975	INTRON sfl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	17610101	2L_17610101_SNP [dm3] 2L_17610101_SNP [dm6]	A	G	2.391e^-4	0.975	INTERGENIC
2L	17610129	2L_17610129_SNP [dm3] 2L_17610129_SNP [dm6]	T	A	2.391e^-4	0.975	INTERGENIC
2L	17610132	2L_17610132_SNP [dm3] 2L_17610132_SNP [dm6]	T	C	2.391e^-4	0.975	INTERGENIC
2L	17610146	2L_17610146_SNP [dm3] 2L_17610146_SNP [dm6]	C	T	2.391e^-4	0.975	INTERGENIC
2L	17610057	2L_17610057_SNP [dm3] 2L_17610057_SNP [dm6]	A	T	2.396e^-4	0.975	INTERGENIC
2L	17610079	2L_17610079_SNP [dm3] 2L_17610079_SNP [dm6]	C	T	2.396e^-4	0.975	INTERGENIC
3R	18390741	3R_18390741_SNP [dm3] 3R_22565019_SNP [dm6]	T	A	2.399e^-4	0.975	INTERGENIC
3L	11721433	3L_11721433_SNP [dm3] 3L_11728333_SNP [dm6]	G	A	2.400e^-4	0.975	UPSTREAM CG32088 DOWNSTREAM Bmcp INTERGENIC
3L	15202161	3L_15202161_SNP [dm3] 3L_15209061_SNP [dm6]	A	T	2.403e^-4	0.975	DOWNSTREAM CG6888 INTERGENIC
3R	14283027	3R_14283027_DEL [dm3] 3R_18457305_DEL [dm6]	TATAT	T	2.406e^-4	0.975	INTRON fru
2L	17610059	2L_17610059_SNP [dm3] 2L_17610059_SNP [dm6]	C	T	2.414e^-4	0.975	INTERGENIC
3L	9312574	3L_9312574_DEL [dm3] 3L_9319474_DEL [dm6]	CT	C	2.421e^-4	0.975	INTERGENIC
2L	15794435	2L_15794435_SNP [dm3] 2L_15794435_SNP [dm6]	T	A	2.426e^-4	0.975	INTERGENIC
2R	12012596	2R_12012596_SNP [dm3] 2R_16125091_SNP [dm6]	A	T	2.434e^-4	0.975	UTR_5_PRIME spin DOWNSTREAM CG30095	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	18304717	3L_18304717_SNP [dm3] 3L_18311617_SNP [dm6]	G	A	2.442e^-4	0.975	INTERGENIC
3L	18304720	3L_18304720_SNP [dm3] 3L_18311620_SNP [dm6]	C	T	2.442e^-4	0.975	INTERGENIC
X	11277568	X_11277568_SNP [dm3] X_11383535_SNP [dm6]	G	A	2.444e^-4	0.975	INTRON dlg1	TF binding site BDTNP1_TFBS_dl
2R	10710568	2R_10710568_SNP [dm3] 2R_14823063_SNP [dm6]	G	C	2.449e^-4	0.975	DOWNSTREAM CR45329 INTERGENIC
2R	13355520	2R_13355520_SNP [dm3] 2R_17468015_SNP [dm6]	C	G	2.450e^-4	0.975	INTRON Tes	TF binding site mE1_TFBS_sens
3R	13063123	3R_13063123_DEL [dm3] 3R_17237401_DEL [dm6]	CAC	C	2.474e^-4	0.975	INTRON beat-IIb	insulator Insulator_Class_II.mE01
X	12156492	X_12156492_SNP [dm3] X_12262459_SNP [dm6]	C	T	2.493e^-4	0.975	INTRON Ten-a
2R	17461048	2R_17461048_SNP [dm3] 2R_21573543_SNP [dm6]	G	A	2.504e^-4	0.975	INTRON CG10440
3L	12882589	3L_12882589_INS [dm3] 3L_12889489_INS [dm6]	T	TT	2.518e^-4	0.975	UPSTREAM CG43894 DOWNSTREAM CG14120 EXON CR45748
2L	16822778	2L_16822778_SNP [dm3] 2L_16822778_SNP [dm6]	T	A	2.527e^-4	0.975	SYNONYMOUS_CODING Cas INTRON mdy
3L	761241	3L_761241_SNP [dm3] 3L_761241_SNP [dm6]	G	A	2.528e^-4	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	4275008	2R_4275008_SNP [dm3] 2R_8387503_SNP [dm6]	A	G	2.537e^-4	0.975	UTR_5_PRIME pdm3 INTRON pdm3
2R	4277275	2R_4277275_SNP [dm3] 2R_8389770_SNP [dm6]	A	T	2.537e^-4	0.975	INTRON pdm3
2R	4277276	2R_4277276_SNP [dm3] 2R_8389771_SNP [dm6]	C	A	2.537e^-4	0.975	INTRON pdm3
X	16821035	X_16821035_SNP [dm3] X_16927002_SNP [dm6]	A	T	2.552e^-4	0.975	INTRON CG4928
2L	3979222	2L_3979222_SNP [dm3] 2L_3979222_SNP [dm6]	T	A	2.559e^-4	0.975	INTRON fred
3R	23639348	3R_23639348_SNP [dm3] 3R_27813626_SNP [dm6]	G	A	2.567e^-4	0.975	INTRON CG34353
2R	13803014	2R_13803014_SNP [dm3] 2R_17915509_SNP [dm6]	T	C	2.580e^-4	0.975	INTRON Elk
2R	13496591	2R_13496591_SNP [dm3] 2R_17609086_SNP [dm6]	C	T	2.583e^-4	0.975	SYNONYMOUS_CODING CG10936
2L	6424633	2L_6424633_SNP [dm3] 2L_6424633_SNP [dm6]	T	C	2.593e^-4	0.975	SYNONYMOUS_CODING Fic	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	6425711	2L_6425711_INS [dm3] 2L_6425711_INS [dm6]	C	CC	2.594e^-4	0.975	INTRON Fic	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	11144959	X_11144959_SNP [dm3] X_11250926_SNP [dm6]	A	T	2.594e^-4	0.975	INTRON CG44422
3L	6318621	3L_6318621_DEL [dm3] 3L_6325521_DEL [dm6]	ACATTTT	A	2.599e^-4	0.975	UPSTREAM Or65b INTERGENIC
3L	6318653	3L_6318653_SNP [dm3] 3L_6325553_SNP [dm6]	T	A	2.599e^-4	0.975	UPSTREAM Or65b INTERGENIC
3L	6318694	3L_6318694_SNP [dm3] 3L_6325594_SNP [dm6]	G	A	2.599e^-4	0.975	UPSTREAM Or65b INTERGENIC
3L	6318750	3L_6318750_SNP [dm3] 3L_6325650_SNP [dm6]	A	C	2.599e^-4	0.975	SYNONYMOUS_CODING Or65b
3L	6318755	3L_6318755_SNP [dm3] 3L_6325655_SNP [dm6]	A	G	2.599e^-4	0.975	NON_SYNONYMOUS_CODING Or65b
2L	2688237	2L_2688237_SNP [dm3] 2L_2688237_SNP [dm6]	C	A	2.610e^-4	0.975	INTRON CG31690
3L	10860569	3L_10860569_SNP [dm3] 3L_10867469_SNP [dm6]	A	C	2.632e^-4	0.975	INTRON tna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	11342187	3L_11342187_SNP [dm3] 3L_11349087_SNP [dm6]	A	T	2.635e^-4	0.975	DOWNSTREAM CR45251 INTERGENIC
3L	10022208	3L_10022208_SNP [dm3] 3L_10029108_SNP [dm6]	G	T	2.640e^-4	0.975	DOWNSTREAM CR45155 INTRON dpr6
X	20434973	X_20434973_SNP [dm3] X_20563946_SNP [dm6]	C	T	2.657e^-4	0.975	INTRON RunxB
4	448023	4_448023_SNP [dm3] 4_427397_SNP [dm6]	C	A	2.663e^-4	0.975	DOWNSTREAM CR43437 EXON CR44024	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	3659339	2L_3659339_SNP [dm3] 2L_3659339_SNP [dm6]	C	T	2.670e^-4	0.975	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	18992709	3R_18992709_SNP [dm3] 3R_23166987_SNP [dm6]	A	T	2.683e^-4	0.975	INTERGENIC
3R	8100530	3R_8100530_SNP [dm3] 3R_12274808_SNP [dm6]	C	A	2.685e^-4	0.975	INTRON svp
3L	4739317	3L_4739317_SNP [dm3] 3L_4739317_SNP [dm6]	A	T	2.693e^-4	0.975	INTRON RhoGEF64C
3R	8134755	3R_8134755_SNP [dm3] 3R_12309033_SNP [dm6]	G	A	2.701e^-4	0.975	INTERGENIC
3R	26471712	3R_26471712_SNP [dm3] 3R_30645990_SNP [dm6]	A	C	2.709e^-4	0.975	UPSTREAM CG31013 DOWNSTREAM PH4alphaPV INTERGENIC
3L	2210081	3L_2210081_SNP [dm3] 3L_2210081_SNP [dm6]	T	C	2.717e^-4	0.975	DOWNSTREAM CG15878 INTERGENIC
3L	7423041	3L_7423041_SNP [dm3] 3L_7429941_SNP [dm6]	G	A	2.740e^-4	0.975	INTRON CG42458	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2R	16746513	2R_16746513_SNP [dm3] 2R_20859008_SNP [dm6]	T	G	2.741e^-4	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7411348	3L_7411348_SNP [dm3] 3L_7418248_SNP [dm6]	T	C	2.741e^-4	0.975	INTERGENIC
2R	11900213	2R_11900213_SNP [dm3] 2R_16012708_SNP [dm6]	A	C	2.741e^-4	0.975	SYNONYMOUS_CODING CG8389	TF binding site BDTNP1_TFBS_sna
2R	14998905	2R_14998905_SNP [dm3] 2R_19111400_SNP [dm6]	C	A	2.742e^-4	0.975	INTRON 5-HT1A
2L	14020653	2L_14020653_SNP [dm3] 2L_14020653_SNP [dm6]	C	T	2.780e^-4	0.975	UPSTREAM NimC3 DOWNSTREAM CR44849 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	16690078	3L_16690078_SNP [dm3] 3L_16696978_SNP [dm6]	A	T	2.799e^-4	0.975	INTRON CR45179 & 2 others
X	20434955	X_20434955_SNP [dm3] X_20563928_SNP [dm6]	C	T	2.800e^-4	0.975	INTRON RunxB
3R	5726668	3R_5726668_SNP [dm3] 3R_9900946_SNP [dm6]	T	C	2.804e^-4	0.975	INTRON Glut4EF
X	7742942	X_7742942_DEL [dm3] X_7848909_DEL [dm6]	AGG	A	2.810e^-4	0.975	INTERGENIC
X	7742948	X_7742948_MNP [dm3] X_7848915_MNP [dm6]	GCC	TAA	2.810e^-4	0.975	INTERGENIC
3L	1278235	3L_1278235_SNP [dm3] 3L_1278235_SNP [dm6]	A	T	2.811e^-4	0.975	INTRON CG32333
3L	15938528	3L_15938528_SNP [dm3] 3L_15945428_SNP [dm6]	G	T	2.818e^-4	0.975	INTRON Pka-C3	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
3L	8206920	3L_8206920_SNP [dm3] 3L_8213820_SNP [dm6]	T	A	2.819e^-4	0.975	DOWNSTREAM CG8006 INTERGENIC
2L	14393222	2L_14393222_SNP [dm3] 2L_14393222_SNP [dm6]	T	C	2.821e^-4	0.975	INTRON elB	TF binding site mE1_TFBS_inv
3L	13978557	3L_13978557_INS [dm3] 3L_13985457_INS [dm6]	G	GTGGCTGCAGTTGCAATTGC...	2.822e^-4	0.975	CODON_INSERTION CG17364	TF binding site mE1_TFBS_cad
4	483326	4_483326_INS [dm3] 4_462700_INS [dm6]	A	AA	2.825e^-4	0.975	INTRON bip2
2L	9950238	2L_9950238_SNP [dm3] 2L_9950238_SNP [dm6]	G	C	2.825e^-4	0.975	DOWNSTREAM mir-87 INTERGENIC
X	7742917	X_7742917_DEL [dm3] X_7848884_DEL [dm6]	TGG	T	2.831e^-4	0.975	INTERGENIC
X	7743035	X_7743035_SNP [dm3] X_7849002_SNP [dm6]	G	A	2.831e^-4	0.975	INTERGENIC
4	503653	4_503653_INS [dm3] 4_483027_INS [dm6]	T	TGTAT	2.832e^-4	0.975	UPSTREAM Asator INTRON Asator	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	10037104	2L_10037104_SNP [dm3] 2L_10037104_SNP [dm6]	G	A	2.839e^-4	0.975	INTRON obst-B
3L	4422936	3L_4422936_SNP [dm3] 3L_4422936_SNP [dm6]	C	T	2.845e^-4	0.975	INTRON CG15020
2R	9426607	2R_9426607_SNP [dm3] 2R_13539102_SNP [dm6]	A	G	2.852e^-4	0.975	SYNONYMOUS_CODING CG6145	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	4368139	3L_4368139_SNP [dm3] 3L_4368139_SNP [dm6]	T	A	2.855e^-4	0.975	UTR_3_PRIME DopEcR UPSTREAM CG11342 DOWNSTREAM DopEcR	TF binding site mE1_TFBS_sens
3L	4368154	3L_4368154_SNP [dm3] 3L_4368154_SNP [dm6]	T	A	2.855e^-4	0.975	UTR_3_PRIME DopEcR UPSTREAM CG11342 DOWNSTREAM DopEcR	TF binding site mE1_TFBS_sens
3R	8671180	3R_8671180_SNP [dm3] 3R_12845458_SNP [dm6]	G	A	2.856e^-4	0.975	INTRON beat-Va
2R	5285409	2R_5285409_SNP [dm3] 2R_9397904_SNP [dm6]	G	A	2.857e^-4	0.975	SYNONYMOUS_CODING CG8801	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18284429	2R_18284429_DEL [dm3] 2R_22396924_DEL [dm6]	TATTCGAT	T	2.874e^-4	0.975	INTRON babos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	4280835	2R_4280835_SNP [dm3] 2R_8393330_SNP [dm6]	C	T	2.878e^-4	0.975	INTRON pdm3	TF binding site mE1_TFBS_cad
2R	9461643	2R_9461643_SNP [dm3] 2R_13574138_SNP [dm6]	C	T	2.897e^-4	0.975	SYNONYMOUS_CODING CG42808 UPSTREAM CR44365	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12448801	2L_12448801_SNP [dm3] 2L_12448801_SNP [dm6]	A	C	2.909e^-4	0.975	SPLICE_SITE_REGION Oatp33Eb UPSTREAM CG5421 INTRON Oatp33Eb
2R	11139750	2R_11139750_SNP [dm3] 2R_15252245_SNP [dm6]	T	G	2.925e^-4	0.975	UPSTREAM scb INTRON scb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
2R	11963825	2R_11963825_SNP [dm3] 2R_16076320_SNP [dm6]	C	G	2.926e^-4	0.975	INTERGENIC
2R	3739755	2R_3739755_SNP [dm3] 2R_7852250_SNP [dm6]	G	C	2.928e^-4	0.975	INTRON Dgk
2R	3784488	2R_3784488_SNP [dm3] 2R_7896983_SNP [dm6]	G	A	2.930e^-4	0.975	INTRON CG30377
3L	16983234	3L_16983234_SNP [dm3] 3L_16990134_SNP [dm6]	A	C	2.950e^-4	0.975	INTRON Exn
3L	10020808	3L_10020808_SNP [dm3] 3L_10027708_SNP [dm6]	A	C	2.953e^-4	0.975	INTRON dpr6
2L	4219196	2L_4219196_SNP [dm3] 2L_4219196_SNP [dm6]	G	C	2.954e^-4	0.975	INTRON ft	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18118287	3L_18118287_SNP [dm3] 3L_18125187_SNP [dm6]	C	T	2.956e^-4	0.975	INTERGENIC
2L	10127657	2L_10127657_SNP [dm3] 2L_10127657_SNP [dm6]	T	C	2.957e^-4	0.975	INTRON CG44153
3R	27183877	3R_27183877_SNP [dm3] 3R_31358155_SNP [dm6]	C	T	2.959e^-4	0.975	INTRON CG34347
3L	14329187	3L_14329187_SNP [dm3] 3L_14336087_SNP [dm6]	A	T	2.959e^-4	0.975	INTRON fz
3L	8320488	3L_8320488_SNP [dm3] 3L_8327388_SNP [dm6]	A	T	2.961e^-4	0.975	UTR_3_PRIME CG34461 DOWNSTREAM CG34461	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	11412885	2L_11412885_SNP [dm3] 2L_11412885_SNP [dm6]	G	C	2.969e^-4	0.975	INTERGENIC	regulatory region REDfly_CRMs
2R	12338934	2R_12338934_SNP [dm3] 2R_16451429_SNP [dm6]	C	A	2.975e^-4	0.975	INTERGENIC
X	14517624	X_14517624_SNP [dm3] X_14623591_SNP [dm6]	T	G	2.976e^-4	0.975	INTRON NetA
2R	18889938	2R_18889938_SNP [dm3] 2R_23002415_SNP [dm6]	G	T	2.977e^-4	0.975	INTRON twi	TF binding site mE1_TFBS_bab1
2R	5088959	2R_5088959_SNP [dm3] 2R_9201454_SNP [dm6]	C	T	2.982e^-4	0.975	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	8129061	2R_8129061_SNP [dm3] 2R_12241556_SNP [dm6]	A	G	3.024e^-4	0.975	UPSTREAM CG43316 DOWNSTREAM CG13170 INTRON CG43315
2R	8129062	2R_8129062_SNP [dm3] 2R_12241557_SNP [dm6]	T	A	3.024e^-4	0.975	UPSTREAM CG43316 DOWNSTREAM CG13170 INTRON CG43315
3L	11385087	3L_11385087_INS [dm3] 3L_11391987_INS [dm6]	T	TCCCCAGATT	3.028e^-4	0.975	INTERGENIC
2R	19924886	2R_19924886_SNP [dm3] 2R_24037363_SNP [dm6]	G	A	3.039e^-4	0.975	UPSTREAM IntS1 DOWNSTREAM MAN1 INTRON Not11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	19924969	2R_19924969_SNP [dm3] 2R_24037446_SNP [dm6]	C	T	3.039e^-4	0.975	SYNONYMOUS_CODING Not11 UPSTREAM IntS1 DOWNSTREAM MAN1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	23749545	3R_23749545_SNP [dm3] 3R_27923823_SNP [dm6]	A	T	3.042e^-4	0.975	UPSTREAM snoRNA:Or-aca3 INTRON RpL4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11672973	3R_11672973_SNP [dm3] 3R_15847251_SNP [dm6]	A	C	3.085e^-4	0.975	SYNONYMOUS_CODING CG4546 INTRON cv-d	TF binding site mE1_TFBS_cad
3R	24960966	3R_24960966_SNP [dm3] 3R_29135244_SNP [dm6]	T	A	3.088e^-4	0.975	INTRON Vha100-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	27189419	3R_27189419_SNP [dm3] 3R_31363697_SNP [dm6]	C	T	3.091e^-4	0.975	INTRON CG34347
3R	26602149	3R_26602149_SNP [dm3] 3R_30776427_SNP [dm6]	G	A	3.095e^-4	0.975	INTRON zfh1
X	4839313	X_4839313_SNP [dm3] X_4945280_SNP [dm6]	A	G	3.102e^-4	0.975	INTRON Ptp4E
X	5021587	X_5021587_DEL [dm3] X_5127554_DEL [dm6]	TACAT	T	3.103e^-4	0.975	INTRON rg & 1 other
2L	17610143	2L_17610143_SNP [dm3] 2L_17610143_SNP [dm6]	T	A	3.111e^-4	0.975	INTERGENIC
3R	16162031	3R_16162031_SNP [dm3] 3R_20336309_SNP [dm6]	G	C	3.113e^-4	0.975	INTERGENIC
X	13970980	X_13970980_SNP [dm3] X_14076947_SNP [dm6]	G	A	3.114e^-4	0.975	INTERGENIC	TF binding site mE1_TFBS_HSA
X	12397846	X_12397846_INS [dm3] X_12503813_INS [dm6]	T	TTGACT	3.117e^-4	0.975	INTRON CG2556
2R	17425125	2R_17425125_SNP [dm3] 2R_21537620_SNP [dm6]	G	A	3.118e^-4	0.975	SPLICE_SITE_REGION CG30287 UPSTREAM CG30286 DOWNSTREAM CG33226 INTRON Egfr & 1 other	TF binding site mE1_TFBS_sens
3R	20960323	3R_20960323_SNP [dm3] 3R_25134601_SNP [dm6]	C	T	3.120e^-4	0.975	SYNONYMOUS_CODING Bili
2L	5519142	2L_5519142_SNP [dm3] 2L_5519142_SNP [dm6]	T	C	3.121e^-4	0.975	SYNONYMOUS_CODING CG7382 UPSTREAM cl DOWNSTREAM CG14020	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	14503621	3R_14503621_SNP [dm3] 3R_18677899_SNP [dm6]	T	C	3.127e^-4	0.975	UTR_5_PRIME CG7706 UPSTREAM CG7705	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA
X	13930180	X_13930180_SNP [dm3] X_14036147_SNP [dm6]	A	G	3.127e^-4	0.975	INTERGENIC
2R	14951883	2R_14951883_SNP [dm3] 2R_19064378_SNP [dm6]	T	C	3.129e^-4	0.975	INTERGENIC
2L	7273120	2L_7273120_SNP [dm3] 2L_7273120_SNP [dm6]	C	G	3.155e^-4	0.975	INTRON Wnt4	TF binding site mE1_TFBS_HSA
2R	5488350	2R_5488350_SNP [dm3] 2R_9600845_SNP [dm6]	T	C	3.158e^-4	0.975	NON_SYNONYMOUS_CODING CG30340 DOWNSTREAM CG30339 INTRON CG1902	TF binding site mE1_TFBS_sens
3L	13334944	3L_13334944_SNP [dm3] 3L_13341844_SNP [dm6]	T	C	3.167e^-4	0.975	INTERGENIC
3L	13334987	3L_13334987_SNP [dm3] 3L_13341887_SNP [dm6]	A	T	3.167e^-4	0.975	INTERGENIC
X	9084214	X_9084214_SNP [dm3] X_9190181_SNP [dm6]	G	A	3.172e^-4	0.975	DOWNSTREAM mei-P26 INTRON CG12115
2R	13821906	2R_13821906_SNP [dm3] 2R_17934401_SNP [dm6]	T	C	3.180e^-4	0.975	INTERGENIC
3L	10469641	3L_10469641_SNP [dm3] 3L_10476541_SNP [dm6]	A	G	3.190e^-4	0.975	INTERGENIC
3L	2869275	3L_2869275_SNP [dm3] 3L_2869275_SNP [dm6]	G	T	3.195e^-4	0.975	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13856870	2R_13856870_SNP [dm3] 2R_17969365_SNP [dm6]	C	T	3.203e^-4	0.975	INTERGENIC
3L	12337051	3L_12337051_SNP [dm3] 3L_12343951_SNP [dm6]	A	G	3.211e^-4	0.975	INTRON CrzR
3L	18304764	3L_18304764_SNP [dm3] 3L_18311664_SNP [dm6]	C	A	3.211e^-4	0.975	INTERGENIC
3R	25624226	3R_25624226_SNP [dm3] 3R_29798504_SNP [dm6]	A	G	3.232e^-4	0.975	NON_SYNONYMOUS_CODING CG7837	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12666719	3L_12666719_SNP [dm3] 3L_12673619_SNP [dm6]	C	T	3.250e^-4	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9845687	3L_9845687_SNP [dm3] 3L_9852587_SNP [dm6]	T	C	3.259e^-4	0.975	INTRON RasGAP1	TF binding site BDTNP1_TFBS_dl
2L	1185812	2L_1185812_SNP [dm3] 2L_1185812_SNP [dm6]	A	G	3.267e^-4	0.975	UTR_5_PRIME CG5001 UPSTREAM CG5001 DOWNSTREAM Tgt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	11931386	2L_11931386_SNP [dm3] 2L_11931386_SNP [dm6]	C	T	3.304e^-4	0.975	INTERGENIC
2L	9572238	2L_9572238_SNP [dm3] 2L_9572238_SNP [dm6]	A	G	3.316e^-4	0.975	NON_SYNONYMOUS_CODING CG3838
2L	13692743	2L_13692743_SNP [dm3] 2L_13692743_SNP [dm6]	T	C	3.348e^-4	0.975	INTRON CG31814
3R	17543897	3R_17543897_SNP [dm3] 3R_21718175_SNP [dm6]	A	T	3.351e^-4	0.975	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
3R	17543959	3R_17543959_SNP [dm3] 3R_21718237_SNP [dm6]	T	A	3.351e^-4	0.975	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
3R	17543984	3R_17543984_SNP [dm3] 3R_21718262_SNP [dm6]	A	T	3.351e^-4	0.975	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
3R	10967359	3R_10967359_SNP [dm3] 3R_15141637_SNP [dm6]	A	G	3.358e^-4	0.975	UTR_3_PRIME CG3987 DOWNSTREAM GlyS	TF binding site BDTNP1_TFBS_twi
3R	8983024	3R_8983024_SNP [dm3] 3R_13157302_SNP [dm6]	T	C	3.360e^-4	0.975	INTRON timeout
2R	4281647	2R_4281647_SNP [dm3] 2R_8394142_SNP [dm6]	G	A	3.374e^-4	0.975	INTRON pdm3	TF binding site mE1_TFBS_bab1
X	13349699	X_13349699_SNP [dm3] X_13455666_SNP [dm6]	C	G	3.379e^-4	0.975	DOWNSTREAM CG34324 INTRON Neto
3R	27211696	3R_27211696_SNP [dm3] 3R_31385974_SNP [dm6]	C	T	3.384e^-4	0.975	INTRON CG1607
X	20471675	X_20471675_SNP [dm3] X_20600648_SNP [dm6]	G	T	3.386e^-4	0.975	INTRON RunxA
2R	5283399	2R_5283399_SNP [dm3] 2R_9395894_SNP [dm6]	A	T	3.386e^-4	0.975	DOWNSTREAM CG8801 & 1 other INTRON CG8800	TF binding site mE1_TFBS_cad
2R	6593028	2R_6593028_SNP [dm3] 2R_10705523_SNP [dm6]	C	T	3.387e^-4	0.975	UPSTREAM stan INTRON stan
3L	14067035	3L_14067035_SNP [dm3] 3L_14073935_SNP [dm6]	A	G	3.411e^-4	0.975	SYNONYMOUS_CODING Pex1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5940121	2L_5940121_SNP [dm3] 2L_5940121_SNP [dm6]	G	A	3.423e^-4	0.975	DOWNSTREAM dsf EXON CR45288
3R	7307651	3R_7307651_SNP [dm3] 3R_11481929_SNP [dm6]	T	A	3.431e^-4	0.975	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	7191150	3L_7191150_SNP [dm3] 3L_7198050_SNP [dm6]	T	A	3.432e^-4	0.975	INTERGENIC
3L	18233305	3L_18233305_SNP [dm3] 3L_18240205_SNP [dm6]	T	C	3.434e^-4	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	8637171	3L_8637171_SNP [dm3] 3L_8644071_SNP [dm6]	T	A	3.449e^-4	0.975	DOWNSTREAM Cpr66D & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13515849	2R_13515849_SNP [dm3] 2R_17628344_SNP [dm6]	T	C	3.455e^-4	0.975	DOWNSTREAM rhi INTRON CG10936
3R	25272369	3R_25272369_DEL [dm3] 3R_29446647_DEL [dm6]	TGGA	AC	3.457e^-4	0.975	INTRON Ptp99A
X	13575989	X_13575989_SNP [dm3] X_13681956_SNP [dm6]	C	T	3.461e^-4	0.975	UPSTREAM CG11158 INTERGENIC
2R	7837831	2R_7837831_DEL [dm3] 2R_11950326_DEL [dm6]	AA	A	3.490e^-4	0.975	INTRON CG13188
2R	18285092	2R_18285092_SNP [dm3] 2R_22397587_SNP [dm6]	A	C	3.497e^-4	0.975	INTRON babos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	4839261	X_4839261_SNP [dm3] X_4945228_SNP [dm6]	C	G	3.500e^-4	0.975	INTRON Ptp4E
2L	13717359	2L_13717359_DEL [dm3] 2L_13717359_DEL [dm6]	CC	C	3.505e^-4	0.975	UPSTREAM CG31814 INTERGENIC
3L	14709900	3L_14709900_SNP [dm3] 3L_14716800_SNP [dm6]	T	C	3.507e^-4	0.975	INTRON ome	regulatory region REDfly_CRMs
3L	14709901	3L_14709901_SNP [dm3] 3L_14716801_SNP [dm6]	C	T	3.507e^-4	0.975	INTRON ome	regulatory region REDfly_CRMs
2L	10482154	2L_10482154_SNP [dm3] 2L_10482154_SNP [dm6]	G	A	3.517e^-4	0.975	SYNONYMOUS_CODING RluA-2 UTR_3_PRIME RluA-2	TF binding site mE1_TFBS_sens
X	11341443	X_11341443_SNP [dm3] X_11447410_SNP [dm6]	T	A	3.525e^-4	0.975	INTRON Evi5	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	16044961	3R_16044961_SNP [dm3] 3R_20219239_SNP [dm6]	A	C	3.532e^-4	0.975	INTRON Nlg4
2R	11158120	2R_11158120_SNP [dm3] 2R_15270615_SNP [dm6]	C	G	3.555e^-4	0.975	INTRON Trpm
2R	6735805	2R_6735805_SNP [dm3] 2R_10848300_SNP [dm6]	A	G	3.571e^-4	0.975	INTRON CG30015
2R	6735813	2R_6735813_SNP [dm3] 2R_10848308_SNP [dm6]	C	T	3.571e^-4	0.975	INTRON CG30015
2L	14057764	2L_14057764_SNP [dm3] 2L_14057764_SNP [dm6]	T	C	3.575e^-4	0.975	INTRON nAChRalpha5
2L	14057799	2L_14057799_SNP [dm3] 2L_14057799_SNP [dm6]	T	A	3.575e^-4	0.975	INTRON nAChRalpha5
3L	18304678	3L_18304678_SNP [dm3] 3L_18311578_SNP [dm6]	A	G	3.579e^-4	0.975	INTERGENIC
3L	18304679	3L_18304679_SNP [dm3] 3L_18311579_SNP [dm6]	T	A	3.579e^-4	0.975	INTERGENIC
3L	18304684	3L_18304684_SNP [dm3] 3L_18311584_SNP [dm6]	A	T	3.579e^-4	0.975	INTERGENIC
2L	3692513	2L_3692513_SNP [dm3] 2L_3692513_SNP [dm6]	T	C	3.589e^-4	0.975	NON_SYNONYMOUS_CODING CG16704 DOWNSTREAM CG3513 & 2 others
3L	15128483	3L_15128483_SNP [dm3] 3L_15135383_SNP [dm6]	C	A	3.596e^-4	0.975	UPSTREAM scaRNA:MeU5-U42 INTRON CG12316
2L	10441068	2L_10441068_SNP [dm3] 2L_10441068_SNP [dm6]	A	T	3.616e^-4	0.975	DOWNSTREAM CG13142 & 1 other INTERGENIC
2L	1096402	2L_1096402_SNP [dm3] 2L_1096402_SNP [dm6]	T	C	3.626e^-4	0.975	INTRON CG4629	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1096406	2L_1096406_SNP [dm3] 2L_1096406_SNP [dm6]	T	C	3.626e^-4	0.975	INTRON CG4629	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9606117	2R_9606117_SNP [dm3] 2R_13718612_SNP [dm6]	C	A	3.640e^-4	0.975	INTRON fas	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	12944476	X_12944476_DEL [dm3] X_13050443_DEL [dm6]	CATATATACATAGCATGGCC...	C	3.642e^-4	0.975	INTRON rad
X	20431728	X_20431728_SNP [dm3] X_20560701_SNP [dm6]	G	A	3.657e^-4	0.975	INTRON RunxB
3L	21968388	3L_21968388_SNP [dm3] 3L_21975288_SNP [dm6]	G	A	3.663e^-4	0.975	INTRON CG7470
3R	5726713	3R_5726713_SNP [dm3] 3R_9900991_SNP [dm6]	C	T	3.664e^-4	0.975	INTRON Glut4EF
2L	8575654	2L_8575654_SNP [dm3] 2L_8575654_SNP [dm6]	G	A	3.671e^-4	0.975	INTRON Sema-1a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	11896397	X_11896397_INS [dm3] X_12002364_INS [dm6]	T	TT	3.681e^-4	0.975	UTR_5_PRIME fw UPSTREAM fw
3L	3645435	3L_3645435_SNP [dm3] 3L_3645435_SNP [dm6]	A	T	3.682e^-4	0.975	INTRON dar1	TF binding site BDTNP1_TFBS_da
3L	3648623	3L_3648623_SNP [dm3] 3L_3648623_SNP [dm6]	T	G	3.682e^-4	0.975	INTRON dar1
3R	8553780	3R_8553780_SNP [dm3] 3R_12728058_SNP [dm6]	G	A	3.708e^-4	0.975	INTRON CR44231	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	5121453	2L_5121453_SNP [dm3] 2L_5121453_SNP [dm6]	A	T	3.711e^-4	0.975	INTRON Msp300
2L	7236876	2L_7236876_SNP [dm3] 2L_7236876_SNP [dm6]	G	A	3.731e^-4	0.975	INTRON Ndae1
2L	7236880	2L_7236880_SNP [dm3] 2L_7236880_SNP [dm6]	T	A	3.731e^-4	0.975	INTRON Ndae1
X	4771002	X_4771002_SNP [dm3] X_4876969_SNP [dm6]	T	G	3.743e^-4	0.975	NON_SYNONYMOUS_CODING CG12681 INTRON CG42594
3R	5719282	3R_5719282_SNP [dm3] 3R_9893560_SNP [dm6]	C	T	3.755e^-4	0.975	INTRON Glut4EF
2L	339912	2L_339912_DEL [dm3] 2L_339912_DEL [dm6]	GAG	G	3.755e^-4	0.975	INTRON Plc21C
2L	13725211	2L_13725211_SNP [dm3] 2L_13725211_SNP [dm6]	C	T	3.755e^-4	0.975	INTERGENIC
3R	26471821	3R_26471821_SNP [dm3] 3R_30646099_SNP [dm6]	C	A	3.758e^-4	0.975	UPSTREAM CG31013 DOWNSTREAM PH4alphaPV INTERGENIC
3R	26471822	3R_26471822_SNP [dm3] 3R_30646100_SNP [dm6]	A	T	3.758e^-4	0.975	UPSTREAM CG31013 DOWNSTREAM PH4alphaPV INTERGENIC
3L	15595205	3L_15595205_SNP [dm3] 3L_15602105_SNP [dm6]	A	G	3.759e^-4	0.975	NON_SYNONYMOUS_CODING RhoGAP71E INTRON RhoGAP71E	TF binding site mE1_TFBS_chinmo
2R	12012414	2R_12012414_SNP [dm3] 2R_16124909_SNP [dm6]	G	A	3.760e^-4	0.975	UPSTREAM spin DOWNSTREAM CG30095 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	12014082	2R_12014082_SNP [dm3] 2R_16126577_SNP [dm6]	G	A	3.760e^-4	0.975	INTRON spin	TF binding site BDTNP1_TFBS_dl
3L	16057931	3L_16057931_SNP [dm3] 3L_16064831_SNP [dm6]	A	C	3.761e^-4	0.975	INTRON Mbs	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	17106874	2L_17106874_SNP [dm3] 2L_17106874_SNP [dm6]	T	A	3.774e^-4	0.975	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	13787185	3R_13787185_SNP [dm3] 3R_17961463_SNP [dm6]	A	C	3.778e^-4	0.975	INTRON cpo
3L	10022132	3L_10022132_SNP [dm3] 3L_10029032_SNP [dm6]	G	A	3.801e^-4	0.975	DOWNSTREAM CR45155 INTRON dpr6
3R	5730320	3R_5730320_SNP [dm3] 3R_9904598_SNP [dm6]	A	G	3.811e^-4	0.975	INTRON Glut4EF
3L	11197346	3L_11197346_SNP [dm3] 3L_11204246_SNP [dm6]	C	T	3.814e^-4	0.975	INTRON Plod
2L	17863000	2L_17863000_SNP [dm3] 2L_17863000_SNP [dm6]	C	G	3.815e^-4	0.975	INTRON CadN2
3L	4484576	3L_4484576_SNP [dm3] 3L_4484576_SNP [dm6]	A	G	3.817e^-4	0.975	DOWNSTREAM CG13722 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
2R	12663959	2R_12663959_SNP [dm3] 2R_16776454_SNP [dm6]	T	C	3.821e^-4	0.975	DOWNSTREAM Arp53D INTERGENIC
2R	19813318	2R_19813318_DEL [dm3] 2R_23925795_DEL [dm6]	CC	G	3.825e^-4	0.975	UTR_3_PRIME Ca-P60A DOWNSTREAM kcc INTRON CG2812	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18304779	3L_18304779_SNP [dm3] 3L_18311679_SNP [dm6]	C	A	3.825e^-4	0.975	INTERGENIC
2L	7455838	2L_7455838_SNP [dm3] 2L_7455838_SNP [dm6]	T	C	3.827e^-4	0.975	NON_SYNONYMOUS_CODING Gr28b INTRON Gr28b	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	761571	3L_761571_SNP [dm3] 3L_761571_SNP [dm6]	A	G	3.830e^-4	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med
2R	19924960	2R_19924960_SNP [dm3] 2R_24037437_SNP [dm6]	C	T	3.844e^-4	0.975	SYNONYMOUS_CODING Not11 UPSTREAM IntS1 DOWNSTREAM MAN1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	5904331	2R_5904331_SNP [dm3] 2R_10016826_SNP [dm6]	G	A	3.847e^-4	0.975	INTRON Pka-R2
3L	16185472	3L_16185472_SNP [dm3] 3L_16192372_SNP [dm6]	T	A	3.858e^-4	0.975	INTERGENIC
2L	1901190	2L_1901190_SNP [dm3] 2L_1901190_SNP [dm6]	G	T	3.859e^-4	0.975	INTRON CG7337
2R	17425136	2R_17425136_SNP [dm3] 2R_21537631_SNP [dm6]	A	C	3.863e^-4	0.975	UPSTREAM CG30286 DOWNSTREAM CG33226 INTRON Egfr & 1 other	TF binding site mE1_TFBS_sens
3L	9675725	3L_9675725_SNP [dm3] 3L_9682625_SNP [dm6]	C	T	3.877e^-4	0.975	SYNONYMOUS_CODING alphaTub67C DOWNSTREAM CG6767	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	9783639	3R_9783639_INS [dm3] 3R_13957917_INS [dm6]	T	TGAT	3.879e^-4	0.975	UPSTREAM Ipp INTERGENIC
3R	9783641	3R_9783641_SNP [dm3] 3R_13957919_SNP [dm6]	G	C	3.879e^-4	0.975	UPSTREAM Ipp INTERGENIC
3L	10699624	3L_10699624_SNP [dm3] 3L_10706524_SNP [dm6]	A	G	3.886e^-4	0.975	INTERGENIC
3L	10699625	3L_10699625_SNP [dm3] 3L_10706525_SNP [dm6]	C	A	3.886e^-4	0.975	INTERGENIC
3R	3440719	3R_3440719_SNP [dm3] 3R_7614997_SNP [dm6]	C	T	3.886e^-4	0.975	INTRON CG34127
2R	3072319	2R_3072319_SNP [dm3] 2R_7184814_SNP [dm6]	T	A	3.887e^-4	0.975	NON_SYNONYMOUS_CODING CG30384 INTRON pk
2R	3072332	2R_3072332_SNP [dm3] 2R_7184827_SNP [dm6]	C	A	3.887e^-4	0.975	NON_SYNONYMOUS_CODING CG30384 INTRON pk
2L	10424431	2L_10424431_SNP [dm3] 2L_10424431_SNP [dm6]	A	G	3.890e^-4	0.975	SYNONYMOUS_CODING CG5168
2R	19690202	2R_19690202_SNP [dm3] 2R_23802679_SNP [dm6]	G	T	3.891e^-4	0.975	UTR_3_PRIME CG30177
3R	15786280	3R_15786280_SNP [dm3] 3R_19960558_SNP [dm6]	A	T	3.893e^-4	0.975	INTRON Hs6st
2R	16753577	2R_16753577_INS [dm3] 2R_20866072_INS [dm6]	G	GTGGA	3.903e^-4	0.975	UTR_5_PRIME CG15227
X	5818606	X_5818606_SNP [dm3] X_5924573_SNP [dm6]	T	A	3.906e^-4	0.975	INTRON CG3726
3L	10022207	3L_10022207_SNP [dm3] 3L_10029107_SNP [dm6]	C	T	3.907e^-4	0.975	DOWNSTREAM CR45155 INTRON dpr6
3L	10022210	3L_10022210_SNP [dm3] 3L_10029110_SNP [dm6]	A	T	3.907e^-4	0.975	DOWNSTREAM CR45155 INTRON dpr6
2R	17727842	2R_17727842_SNP [dm3] 2R_21840337_SNP [dm6]	G	A	3.910e^-4	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	13717342	2L_13717342_SNP [dm3] 2L_13717342_SNP [dm6]	C	G	3.916e^-4	0.975	UPSTREAM CG31814 INTERGENIC
3L	18304661	3L_18304661_SNP [dm3] 3L_18311561_SNP [dm6]	T	C	3.926e^-4	0.975	INTERGENIC
3L	4422598	3L_4422598_SNP [dm3] 3L_4422598_SNP [dm6]	T	C	3.926e^-4	0.975	INTRON CG15020
3L	6309233	3L_6309233_SNP [dm3] 3L_6316133_SNP [dm6]	A	C	3.944e^-4	0.975	INTERGENIC	regulatory region REDfly_CRMs
3L	9085172	3L_9085172_SNP [dm3] 3L_9092072_SNP [dm6]	A	T	3.978e^-4	0.975	UTR_3_PRIME Tequila UPSTREAM CG32032
3L	22840756	3L_22840756_DEL [dm3] 3L_22847656_DEL [dm6]	GCCTTTGCTTGAAG...	G	4.004e^-4	0.975	DOWNSTREAM tRNA:CR32460 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	5690740	2R_5690740_SNP [dm3] 2R_9803235_SNP [dm6]	C	T	4.006e^-4	0.975	INTRON CG1688
3L	6309222	3L_6309222_SNP [dm3] 3L_6316122_SNP [dm6]	G	T	4.025e^-4	0.975	INTERGENIC	regulatory region REDfly_CRMs
3L	19386664	3L_19386664_SNP [dm3] 3L_19393564_SNP [dm6]	T	A	4.029e^-4	0.975	INTRON CG32206
3L	11427504	3L_11427504_SNP [dm3] 3L_11434404_SNP [dm6]	G	T	4.037e^-4	0.975	DOWNSTREAM CG6149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	18654758	2R_18654758_SNP [dm3] 2R_22767253_SNP [dm6]	T	G	4.040e^-4	0.975	INTRON CG42260
3L	17904485	3L_17904485_SNP [dm3] 3L_17911385_SNP [dm6]	T	G	4.056e^-4	0.975	SYNONYMOUS_CODING CG5290	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11352484	3R_11352484_SNP [dm3] 3R_15526762_SNP [dm6]	G	A	4.059e^-4	0.975	INTERGENIC
2R	6357862	2R_6357862_SNP [dm3] 2R_10470357_SNP [dm6]	T	G	4.064e^-4	0.975	DOWNSTREAM CG11777 INTRON whd	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6073805	2R_6073805_SNP [dm3] 2R_10186300_SNP [dm6]	T	C	4.084e^-4	0.975	INTRON KCNQ
2R	15211961	2R_15211961_SNP [dm3] 2R_19324456_SNP [dm6]	C	T	4.087e^-4	0.975	INTRON Rgk1
3R	27211638	3R_27211638_SNP [dm3] 3R_31385916_SNP [dm6]	C	T	4.095e^-4	0.975	INTRON CG1607
2R	16933996	2R_16933996_SNP [dm3] 2R_21046491_SNP [dm6]	T	C	4.102e^-4	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	4690372	X_4690372_SNP [dm3] X_4796339_SNP [dm6]	C	T	4.104e^-4	0.975	DOWNSTREAM CG2861 INTERGENIC
3R	9783621	3R_9783621_SNP [dm3] 3R_13957899_SNP [dm6]	T	G	4.106e^-4	0.975	UPSTREAM Ipp INTERGENIC
3R	10126270	3R_10126270_SNP [dm3] 3R_14300548_SNP [dm6]	T	C	4.115e^-4	0.975	SYNONYMOUS_CODING CG12207	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14577550	3L_14577550_SNP [dm3] 3L_14584450_SNP [dm6]	A	G	4.121e^-4	0.975	INTRON HGTX	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17812962	2L_17812962_SNP [dm3] 2L_17812962_SNP [dm6]	A	G	4.124e^-4	0.975	UPSTREAM CG42830 INTRON CadN2
3L	4895629	3L_4895629_SNP [dm3] 3L_4895629_SNP [dm6]	C	T	4.133e^-4	0.975	UTR_3_PRIME CG17150
2L	6950118	2L_6950118_SNP [dm3] 2L_6950118_SNP [dm6]	A	G	4.135e^-4	0.975	UTR_5_PRIME Gas41 UPSTREAM SA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	2680366	3L_2680366_SNP [dm3] 3L_2680366_SNP [dm6]	C	T	4.144e^-4	0.975	INTRON Fife
3L	16325797	3L_16325797_SNP [dm3] 3L_16332697_SNP [dm6]	C	T	4.148e^-4	0.975	UTR_3_PRIME retinin UPSTREAM CG13056 DOWNSTREAM CG33060	TF binding site mE1_TFBS_cad
2L	14093702	2L_14093702_SNP [dm3] 2L_14093702_SNP [dm6]	G	A	4.156e^-4	0.975	UTR_3_PRIME nAChRalpha5 DOWNSTREAM nAChRalpha5
2R	11021119	2R_11021119_SNP [dm3] 2R_15133614_SNP [dm6]	A	G	4.159e^-4	0.975	INTRON chn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	16248509	3L_16248509_SNP [dm3] 3L_16255409_SNP [dm6]	C	A	4.177e^-4	0.975	DOWNSTREAM CG13054 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	20803201	2L_20803201_SNP [dm3] 2L_20803201_SNP [dm6]	T	A	4.182e^-4	0.975	INTRON CG9328
3L	3634296	3L_3634296_SNP [dm3] 3L_3634296_SNP [dm6]	A	T	4.187e^-4	0.975	INTRON dar1	TF binding site mE1_TFBS_HSA
2R	6746249	2R_6746249_SNP [dm3] 2R_10858744_SNP [dm6]	C	A	4.190e^-4	0.975	UPSTREAM CR44302 INTRON CG30015
2R	19675945	2R_19675945_SNP [dm3] 2R_23788422_SNP [dm6]	T	C	4.192e^-4	0.975	INTRON CG9850
2R	19675952	2R_19675952_SNP [dm3] 2R_23788429_SNP [dm6]	G	A	4.192e^-4	0.975	INTRON CG9850
3L	10396546	3L_10396546_SNP [dm3] 3L_10403446_SNP [dm6]	G	C	4.192e^-4	0.975	INTERGENIC
3L	17929647	3L_17929647_SNP [dm3] 3L_17936547_SNP [dm6]	A	C	4.205e^-4	0.975	DOWNSTREAM CG43173 INTRON CG43174
3R	10944375	3R_10944375_SNP [dm3] 3R_15118653_SNP [dm6]	T	G	4.207e^-4	0.975	INTRON CG42788
2R	16915212	2R_16915212_SNP [dm3] 2R_21027707_SNP [dm6]	T	A	4.209e^-4	0.975	INTERGENIC
2R	3073507	2R_3073507_SNP [dm3] 2R_7186002_SNP [dm6]	G	A	4.217e^-4	0.975	DOWNSTREAM CG30384 INTRON pk
2L	2185520	2L_2185520_INS [dm3] 2L_2185520_INS [dm6]	T	TAGAT	4.220e^-4	0.975	DOWNSTREAM CR43751 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
2R	12459840	2R_12459840_SNP [dm3] 2R_16572335_SNP [dm6]	C	T	4.220e^-4	0.975	SYNONYMOUS_CODING CG4927	TF binding site mE1_TFBS_bab1
3L	16470853	3L_16470853_SNP [dm3] 3L_16477753_SNP [dm6]	A	G	4.234e^-4	0.975	INTRON CG33158 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15669678	2R_15669678_SNP [dm3] 2R_19782173_SNP [dm6]	T	C	4.239e^-4	0.975	INTERGENIC
3L	6971323	3L_6971323_DEL [dm3] 3L_6978223_DEL [dm6]	CACTAT	A	4.240e^-4	0.975	INTRON Galphai EXON CR32385	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11024476	3L_11024476_SNP [dm3] 3L_11031376_SNP [dm6]	T	A	4.266e^-4	0.975	INTERGENIC
2L	13711370	2L_13711370_SNP [dm3] 2L_13711370_SNP [dm6]	T	A	4.284e^-4	0.975	DOWNSTREAM CG7311 INTRON CG31814
3L	18304772	3L_18304772_SNP [dm3] 3L_18311672_SNP [dm6]	T	A	4.287e^-4	0.975	INTERGENIC
3L	18304778	3L_18304778_SNP [dm3] 3L_18311678_SNP [dm6]	T	A	4.287e^-4	0.975	INTERGENIC
3R	15086134	3R_15086134_SNP [dm3] 3R_19260412_SNP [dm6]	C	T	4.290e^-4	0.975	DOWNSTREAM CG14280 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8672469	2L_8672469_SNP [dm3] 2L_8672469_SNP [dm6]	T	C	4.295e^-4	0.975	UPSTREAM Glt DOWNSTREAM Sema-1a INTERGENIC
2L	5121455	2L_5121455_SNP [dm3] 2L_5121455_SNP [dm6]	T	A	4.309e^-4	0.975	INTRON Msp300
2L	7559263	2L_7559263_SNP [dm3] 2L_7559263_SNP [dm6]	A	C	4.312e^-4	0.975	INTRON RapGAP1
3R	9783700	3R_9783700_DEL [dm3] 3R_13957978_DEL [dm6]	TAAGCTTAAT	T	4.322e^-4	0.975	UPSTREAM Ipp INTERGENIC	TF binding site mE1_TFBS_cad
3R	11588019	3R_11588019_SNP [dm3] 3R_15762297_SNP [dm6]	G	A	4.324e^-4	0.975	UPSTREAM CG12784 INTERGENIC
3R	9368635	3R_9368635_INS [dm3] 3R_13542913_INS [dm6]	C	CC	4.331e^-4	0.975	INTERGENIC
2L	5536086	2L_5536086_SNP [dm3] 2L_5536086_SNP [dm6]	C	T	4.341e^-4	0.975	SYNONYMOUS_CODING tomb DOWNSTREAM CG14015 & 1 other	TF binding site mE1_TFBS_chinmo
2L	17767151	2L_17767151_SNP [dm3] 2L_17767151_SNP [dm6]	A	G	4.358e^-4	0.975	INTRON CadN
2L	7030119	2L_7030119_SNP [dm3] 2L_7030119_SNP [dm6]	A	G	4.381e^-4	0.975	DOWNSTREAM Rab30 INTERGENIC
2R	7836118	2R_7836118_SNP [dm3] 2R_11948613_SNP [dm6]	G	A	4.382e^-4	0.975	INTRON CG13188
2R	5088960	2R_5088960_SNP [dm3] 2R_9201455_SNP [dm6]	T	G	4.386e^-4	0.975	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	15202186	3L_15202186_SNP [dm3] 3L_15209086_SNP [dm6]	T	A	4.394e^-4	0.975	DOWNSTREAM CG6888 INTERGENIC
2L	14309789	2L_14309789_SNP [dm3] 2L_14309789_SNP [dm6]	A	T	4.398e^-4	0.975	INTRON wb	TF binding site mE1_TFBS_HSA
2L	14031895	2L_14031895_SNP [dm3] 2L_14031895_SNP [dm6]	T	C	4.408e^-4	0.975	UPSTREAM CG18095 DOWNSTREAM CR45284 INTERGENIC
2R	15566374	2R_15566374_SNP [dm3] 2R_19678869_SNP [dm6]	A	G	4.412e^-4	0.975	INTERGENIC
X	18391760	X_18391760_SNP [dm3] X_18497727_SNP [dm6]	T	A	4.420e^-4	0.975	INTRON GalNAc-T2
3L	10022247	3L_10022247_INS [dm3] 3L_10029147_INS [dm6]	A	ATGACAA	4.420e^-4	0.975	DOWNSTREAM CR45155 INTRON dpr6
X	4839219	X_4839219_DEL [dm3] X_4945186_DEL [dm6]	AA	A	4.421e^-4	0.975	INTRON Ptp4E
2L	17106963	2L_17106963_SNP [dm3] 2L_17106963_SNP [dm6]	A	T	4.423e^-4	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4203838	X_4203838_SNP [dm3] X_4309805_SNP [dm6]	A	C	4.429e^-4	0.975	INTERGENIC
3L	3846855	3L_3846855_SNP [dm3] 3L_3846855_SNP [dm6]	T	A	4.431e^-4	0.975	INTRON Awh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
3L	7411537	3L_7411537_SNP [dm3] 3L_7418437_SNP [dm6]	A	T	4.433e^-4	0.975	INTERGENIC
2L	3692520	2L_3692520_SNP [dm3] 2L_3692520_SNP [dm6]	A	T	4.435e^-4	0.975	NON_SYNONYMOUS_CODING CG16704 DOWNSTREAM CG3513 & 2 others
3L	11237468	3L_11237468_SNP [dm3] 3L_11244368_SNP [dm6]	T	C	4.443e^-4	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
2L	8652378	2L_8652378_SNP [dm3] 2L_8652378_SNP [dm6]	A	G	4.456e^-4	0.975	INTRON Sema-1a
X	15312292	X_15312292_SNP [dm3] X_15418259_SNP [dm6]	A	C	4.472e^-4	0.975	INTRON Cngl
3R	16314658	3R_16314658_INS [dm3] 3R_20488936_INS [dm6]	T	TTACC	4.475e^-4	0.975	INTERGENIC
3L	7002851	3L_7002851_SNP [dm3] 3L_7009751_SNP [dm6]	C	T	4.476e^-4	0.975	INTRON Mp
3L	18090533	3L_18090533_SNP [dm3] 3L_18097433_SNP [dm6]	C	T	4.479e^-4	0.975	INTRON CG13698
3R	15456373	3R_15456373_SNP [dm3] 3R_19630651_SNP [dm6]	C	A	4.479e^-4	0.975	INTRON CG6231
3L	11208298	3L_11208298_SNP [dm3] 3L_11215198_SNP [dm6]	C	A	4.491e^-4	0.975	UPSTREAM CG42671 INTRON CG42671	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_Kr mE1_TFBS_Trl
3R	11237305	3R_11237305_SNP [dm3] 3R_15411583_SNP [dm6]	C	A	4.493e^-4	0.975	INTRON Atx2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4751330	X_4751330_SNP [dm3] X_4857297_SNP [dm6]	T	C	4.493e^-4	0.975	INTRON CG42594
3L	21967034	3L_21967034_SNP [dm3] 3L_21973934_SNP [dm6]	T	C	4.493e^-4	0.975	INTRON CG7470
3L	21967038	3L_21967038_SNP [dm3] 3L_21973938_SNP [dm6]	C	T	4.493e^-4	0.975	INTRON CG7470
3L	21967049	3L_21967049_SNP [dm3] 3L_21973949_SNP [dm6]	G	A	4.493e^-4	0.975	INTRON CG7470
3L	3510368	3L_3510368_SNP [dm3] 3L_3510368_SNP [dm6]	A	T	4.494e^-4	0.975	UTR_3_PRIME CG42324 DOWNSTREAM ImpE2
3R	20819924	3R_20819924_SNP [dm3] 3R_24994202_SNP [dm6]	C	A	4.501e^-4	0.975	INTRON tnc
2L	12982914	2L_12982914_SNP [dm3] 2L_12982914_SNP [dm6]	A	C	4.511e^-4	0.975	INTERGENIC
2R	15015138	2R_15015138_SNP [dm3] 2R_19127633_SNP [dm6]	C	T	4.528e^-4	0.975	UPSTREAM CG15117 INTRON CG15117
3L	14558886	3L_14558886_SNP [dm3] 3L_14565786_SNP [dm6]	C	G	4.539e^-4	0.975	INTERGENIC
3L	14558890	3L_14558890_SNP [dm3] 3L_14565790_SNP [dm6]	C	T	4.539e^-4	0.975	INTERGENIC
3L	14558892	3L_14558892_SNP [dm3] 3L_14565792_SNP [dm6]	A	C	4.539e^-4	0.975	INTERGENIC
3R	2639405	3R_2639405_SNP [dm3] 3R_6813683_SNP [dm6]	G	A	4.540e^-4	0.975	INTRON CR42651	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2R	16428377	2R_16428377_SNP [dm3] 2R_20540872_SNP [dm6]	T	C	4.542e^-4	0.975	UPSTREAM CG13428 EXON CR44652	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	5276613	3L_5276613_SNP [dm3] 3L_5283513_SNP [dm6]	G	C	4.549e^-4	0.975	INTERGENIC
3L	5276766	3L_5276766_SNP [dm3] 3L_5283666_SNP [dm6]	C	A	4.549e^-4	0.975	INTERGENIC
3L	5276795	3L_5276795_SNP [dm3] 3L_5283695_SNP [dm6]	G	T	4.549e^-4	0.975	INTERGENIC
3L	6319161	3L_6319161_SNP [dm3] 3L_6326061_SNP [dm6]	A	G	4.551e^-4	0.975	SYNONYMOUS_CODING Or65b
3L	6319660	3L_6319660_DEL [dm3] 3L_6326560_DEL [dm6]	TA	T	4.551e^-4	0.975	INTRON Or65b
3L	6319666	3L_6319666_MNP [dm3] 3L_6326566_MNP [dm6]	GGTT	TCCC	4.551e^-4	0.975	INTRON Or65b
3L	6319671	3L_6319671_DEL [dm3] 3L_6326571_DEL [dm6]	TT	T	4.551e^-4	0.975	SPLICE_SITE_REGION Or65b INTRON Or65b
3L	6320555	3L_6320555_SNP [dm3] 3L_6327455_SNP [dm6]	T	G	4.551e^-4	0.975	UPSTREAM Or65c DOWNSTREAM Or65b INTERGENIC
3L	6320569	3L_6320569_SNP [dm3] 3L_6327469_SNP [dm6]	T	G	4.551e^-4	0.975	UPSTREAM Or65c DOWNSTREAM Or65b INTERGENIC
3L	6320575	3L_6320575_DEL [dm3] 3L_6327475_DEL [dm6]	TATTGT	T	4.551e^-4	0.975	UPSTREAM Or65c DOWNSTREAM Or65b INTERGENIC
3L	6320590	3L_6320590_SNP [dm3] 3L_6327490_SNP [dm6]	A	T	4.551e^-4	0.975	UPSTREAM Or65c DOWNSTREAM Or65b INTERGENIC
3L	6320603	3L_6320603_SNP [dm3] 3L_6327503_SNP [dm6]	G	A	4.551e^-4	0.975	UPSTREAM Or65c DOWNSTREAM Or65b INTERGENIC
3L	6320606	3L_6320606_SNP [dm3] 3L_6327506_SNP [dm6]	G	A	4.551e^-4	0.975	UPSTREAM Or65c DOWNSTREAM Or65b INTERGENIC
3L	6320614	3L_6320614_SNP [dm3] 3L_6327514_SNP [dm6]	T	A	4.551e^-4	0.975	UPSTREAM Or65c DOWNSTREAM Or65b INTERGENIC
3L	14618996	3L_14618996_SNP [dm3] 3L_14625896_SNP [dm6]	T	A	4.554e^-4	0.975	INTRON CG9628	TF binding site BDTNP1_TFBS_dl
2L	6949574	2L_6949574_SNP [dm3] 2L_6949574_SNP [dm6]	A	G	4.554e^-4	0.975	UPSTREAM ihog & 1 other INTRON Gas41	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	6949582	2L_6949582_SNP [dm3] 2L_6949582_SNP [dm6]	C	T	4.554e^-4	0.975	UPSTREAM ihog & 1 other INTRON Gas41	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	14501023	2R_14501023_SNP [dm3] 2R_18613518_SNP [dm6]	C	G	4.557e^-4	0.975	NON_SYNONYMOUS_CODING CG10927 UPSTREAM CG42697 DOWNSTREAM mRpS28	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	13789861	3R_13789861_SNP [dm3] 3R_17964139_SNP [dm6]	C	A	4.564e^-4	0.975	INTRON cpo
2L	5222207	2L_5222207_INS [dm3] 2L_5222207_INS [dm6]	G	GG	4.570e^-4	0.975	INTRON tkv
2L	5222222	2L_5222222_SNP [dm3] 2L_5222222_SNP [dm6]	T	C	4.570e^-4	0.975	INTRON tkv
3L	12827019	3L_12827019_SNP [dm3] 3L_12833919_SNP [dm6]	C	G	4.576e^-4	0.975	INTRON CG10960	TF binding site BDTNP1_TFBS_dl
2R	14187575	2R_14187575_SNP [dm3] 2R_18300070_SNP [dm6]	T	C	4.601e^-4	0.975	UTR_3_PRIME CG18540 INTRON sbb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	20900840	2L_20900840_SNP [dm3] 2L_20900840_SNP [dm6]	C	T	4.612e^-4	0.975	UPSTREAM CR33317 INTRON sky & 1 other	transposable element FlyBase
3R	27244111	3R_27244111_SNP [dm3] 3R_31418389_SNP [dm6]	C	T	4.620e^-4	0.975	INTRON Gprk2
3L	11153110	3L_11153110_SNP [dm3] 3L_11160010_SNP [dm6]	T	A	4.623e^-4	0.975	INTRON CG32082	TF binding site mE1_TFBS_chinmo
2L	13337374	2L_13337374_SNP [dm3] 2L_13337374_SNP [dm6]	G	A	4.625e^-4	0.975	INTERGENIC
3R	19540227	3R_19540227_SNP [dm3] 3R_23714505_SNP [dm6]	G	C	4.626e^-4	0.975	INTRON nau
3L	825799	3L_825799_DEL [dm3] 3L_825799_DEL [dm6]	CA	C	4.638e^-4	0.975	DOWNSTREAM CG13900 & 1 other INTERGENIC
3R	6492459	3R_6492459_SNP [dm3] 3R_10666737_SNP [dm6]	G	C	4.640e^-4	0.975	INTERGENIC
3R	27247026	3R_27247026_SNP [dm3] 3R_31421304_SNP [dm6]	C	T	4.640e^-4	0.975	INTRON Gprk2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	20290592	3R_20290592_SNP [dm3] 3R_24464870_SNP [dm6]	G	A	4.642e^-4	0.975	UPSTREAM CR45649 INTERGENIC
2R	13821756	2R_13821756_SNP [dm3] 2R_17934251_SNP [dm6]	A	G	4.655e^-4	0.975	INTERGENIC
2R	4664294	2R_4664294_SNP [dm3] 2R_8776789_SNP [dm6]	A	G	4.656e^-4	0.975	INTERGENIC
3R	14716615	3R_14716615_SNP [dm3] 3R_18890893_SNP [dm6]	T	C	4.680e^-4	0.975	INTERGENIC
3R	5989854	3R_5989854_SNP [dm3] 3R_10164132_SNP [dm6]	T	C	4.682e^-4	0.975	INTRON Best1
3R	9369218	3R_9369218_SNP [dm3] 3R_13543496_SNP [dm6]	G	A	4.687e^-4	0.975	DOWNSTREAM CG31337 INTERGENIC
3L	14069565	3L_14069565_SNP [dm3] 3L_14076465_SNP [dm6]	G	A	4.690e^-4	0.975	UPSTREAM btl DOWNSTREAM Pex1 INTRON btl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25152995	3R_25152995_SNP [dm3] 3R_29327273_SNP [dm6]	A	T	4.693e^-4	0.975	INTERGENIC
2R	10710564	2R_10710564_SNP [dm3] 2R_14823059_SNP [dm6]	C	T	4.694e^-4	0.975	DOWNSTREAM CR45329 INTERGENIC
3L	13030532	3L_13030532_SNP [dm3] 3L_13037432_SNP [dm6]	T	C	4.718e^-4	0.975	SYNONYMOUS_CODING SRm160 DOWNSTREAM CG17672	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	12421515	3L_12421515_SNP [dm3] 3L_12428415_SNP [dm6]	T	C	4.718e^-4	0.975	INTRON toe	TF binding site mE1_TFBS_chinmo
3L	3787445	3L_3787445_SNP [dm3] 3L_3787445_SNP [dm6]	A	T	4.719e^-4	0.975	INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	15794407	2L_15794407_SNP [dm3] 2L_15794407_SNP [dm6]	T	A	4.720e^-4	0.975	INTERGENIC
2R	18284264	2R_18284264_SNP [dm3] 2R_22396759_SNP [dm6]	A	G	4.726e^-4	0.975	INTRON babos	TF binding site BDTNP1_TFBS_dl
3R	18042307	3R_18042307_SNP [dm3] 3R_22216585_SNP [dm6]	C	T	4.726e^-4	0.975	SYNONYMOUS_CODING Gld2 INTRON SKIP
X	10031273	X_10031273_SNP [dm3] X_10137240_SNP [dm6]	A	C	4.727e^-4	0.975	INTRON CR44894 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27614076	3R_27614076_SNP [dm3] 3R_31788354_SNP [dm6]	T	C	4.727e^-4	0.975	DOWNSTREAM faf INTRON faf	TF binding site mE1_TFBS_cad
3R	8243856	3R_8243856_SNP [dm3] 3R_12418134_SNP [dm6]	T	A	4.728e^-4	0.975	NON_SYNONYMOUS_CODING pps	TF binding site mE1_TFBS_cad
2L	7826997	2L_7826997_SNP [dm3] 2L_7826997_SNP [dm6]	G	A	4.735e^-4	0.975	UPSTREAM mts INTRON Rack1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23778544	3R_23778544_SNP [dm3] 3R_27952822_SNP [dm6]	C	T	4.738e^-4	0.975	SYNONYMOUS_CODING CG4951 DOWNSTREAM Gp93	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	9133258	3R_9133258_SNP [dm3] 3R_13307536_SNP [dm6]	A	C	4.740e^-4	0.975	INTRON CG32473
X	10031004	X_10031004_DEL [dm3] X_10136971_DEL [dm6]	ATAAGAGGA	A	4.751e^-4	0.975	INTRON CR44894 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14010395	2L_14010395_SNP [dm3] 2L_14010395_SNP [dm6]	T	C	4.767e^-4	0.975	DOWNSTREAM tRNA:Q:34E INTERGENIC
2R	13230617	2R_13230617_SNP [dm3] 2R_17343112_SNP [dm6]	A	G	4.771e^-4	0.975	INTRON mbl
3L	4294514	3L_4294514_SNP [dm3] 3L_4294514_SNP [dm6]	T	C	4.783e^-4	0.975	UTR_3_PRIME dyl	TF binding site mE1_TFBS_cad
3L	11722258	3L_11722258_SNP [dm3] 3L_11729158_SNP [dm6]	A	C	4.797e^-4	0.975	INTRON CG32088
X	13351657	X_13351657_SNP [dm3] X_13457624_SNP [dm6]	A	G	4.800e^-4	0.975	UTR_5_PRIME CG34324 INTRON Neto
2R	6746247	2R_6746247_SNP [dm3] 2R_10858742_SNP [dm6]	G	A	4.801e^-4	0.975	UPSTREAM CR44302 INTRON CG30015
2R	11139684	2R_11139684_SNP [dm3] 2R_15252179_SNP [dm6]	G	A	4.817e^-4	0.975	UPSTREAM scb INTRON scb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	3895518	2R_3895518_SNP [dm3] 2R_8008013_SNP [dm6]	C	T	4.827e^-4	0.975	SYNONYMOUS_CODING Odc2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19925199	2R_19925199_SNP [dm3] 2R_24037676_SNP [dm6]	T	A	4.829e^-4	0.975	UTR_5_PRIME Not11 UPSTREAM IntS1 DOWNSTREAM MAN1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	19925269	2R_19925269_SNP [dm3] 2R_24037746_SNP [dm6]	G	T	4.829e^-4	0.975	UTR_5_PRIME Not11 UPSTREAM IntS1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	10111671	2L_10111671_SNP [dm3] 2L_10111671_SNP [dm6]	T	C	4.840e^-4	0.975	INTRON CG44153 & 1 other
2L	6949585	2L_6949585_SNP [dm3] 2L_6949585_SNP [dm6]	A	G	4.846e^-4	0.975	UPSTREAM ihog & 1 other INTRON Gas41	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	10967309	3R_10967309_SNP [dm3] 3R_15141587_SNP [dm6]	C	G	4.849e^-4	0.975	UTR_3_PRIME CG3987 DOWNSTREAM GlyS	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3159894	X_3159894_SNP [dm3] X_3265861_SNP [dm6]	A	T	4.850e^-4	0.975	INTRON dnc
X	4839142	X_4839142_SNP [dm3] X_4945109_SNP [dm6]	T	A	4.850e^-4	0.975	INTRON Ptp4E
X	4839153	X_4839153_SNP [dm3] X_4945120_SNP [dm6]	C	T	4.850e^-4	0.975	INTRON Ptp4E
3L	4714780	3L_4714780_SNP [dm3] 3L_4714780_SNP [dm6]	A	G	4.855e^-4	0.975	INTRON RhoGEF64C
X	17831255	X_17831255_SNP [dm3] X_17937222_SNP [dm6]	A	C	4.865e^-4	0.975	INTRON Sh
2R	12011490	2R_12011490_SNP [dm3] 2R_16123985_SNP [dm6]	C	T	4.867e^-4	0.975	UPSTREAM spin INTRON CG30095	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_Ubx
3R	19155622	3R_19155622_SNP [dm3] 3R_23329900_SNP [dm6]	A	G	4.869e^-4	0.975	INTRON pnt
2L	16563966	2L_16563966_SNP [dm3] 2L_16563966_SNP [dm6]	A	T	4.869e^-4	0.975	INTRON CG42389
2L	14410113	2L_14410113_SNP [dm3] 2L_14410113_SNP [dm6]	T	C	4.879e^-4	0.975	UPSTREAM elB DOWNSTREAM CR44733 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
2R	6038383	2R_6038383_SNP [dm3] 2R_10150878_SNP [dm6]	G	T	4.881e^-4	0.975	SYNONYMOUS_CODING KCNQ	TF binding site mE1_TFBS_cad
3R	27210167	3R_27210167_SNP [dm3] 3R_31384445_SNP [dm6]	G	A	4.896e^-4	0.975	UTR_5_PRIME CG1607 INTRON CG1607	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	11040179	2R_11040179_SNP [dm3] 2R_15152674_SNP [dm6]	G	A	4.919e^-4	0.975	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	27244085	3R_27244085_SNP [dm3] 3R_31418363_SNP [dm6]	T	A	4.923e^-4	0.975	INTRON Gprk2
X	4691174	X_4691174_INS [dm3] X_4797141_INS [dm6]	C	TCAAAAACGATTGCAG...	4.923e^-4	0.975	DOWNSTREAM CG2861 INTERGENIC
X	4691198	X_4691198_SNP [dm3] X_4797165_SNP [dm6]	C	G	4.923e^-4	0.975	DOWNSTREAM CG2861 INTERGENIC
2L	15794413	2L_15794413_SNP [dm3] 2L_15794413_SNP [dm6]	A	G	4.925e^-4	0.975	INTERGENIC
2R	9777064	2R_9777064_SNP [dm3] 2R_13889559_SNP [dm6]	T	G	4.927e^-4	0.975	NON_SYNONYMOUS_CODING shot INTRON shot
2R	14498690	2R_14498690_DEL [dm3] 2R_18611185_DEL [dm6]	TACGGA	T	4.933e^-4	0.975	UTR_5_PRIME GEFmeso DOWNSTREAM CG42697	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
3L	11116816	3L_11116816_INS [dm3] 3L_11123716_INS [dm6]	T	TT	4.934e^-4	0.975	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11116847	3L_11116847_SNP [dm3] 3L_11123747_SNP [dm6]	A	G	4.934e^-4	0.975	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11116849	3L_11116849_SNP [dm3] 3L_11123749_SNP [dm6]	G	A	4.934e^-4	0.975	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	16358072	2L_16358072_SNP [dm3] 2L_16358072_SNP [dm6]	A	T	4.937e^-4	0.975	INTERGENIC
X	10031064	X_10031064_SNP [dm3] X_10137031_SNP [dm6]	A	C	4.937e^-4	0.975	INTRON CR44894 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17098153	3L_17098153_SNP [dm3] 3L_17105053_SNP [dm6]	A	C	4.957e^-4	0.975	INTRON Rbp6
2R	18600730	2R_18600730_SNP [dm3] 2R_22713225_SNP [dm6]	A	G	4.961e^-4	0.975	SYNONYMOUS_CODING CG30268 DOWNSTREAM CG30275
3R	15073219	3R_15073219_SNP [dm3] 3R_19247497_SNP [dm6]	C	T	4.964e^-4	0.975	SYNONYMOUS_CODING CG5217	TF binding site mE1_TFBS_sens
3L	7002855	3L_7002855_SNP [dm3] 3L_7009755_SNP [dm6]	G	T	4.964e^-4	0.975	INTRON Mp
3L	7002864	3L_7002864_SNP [dm3] 3L_7009764_SNP [dm6]	C	T	4.964e^-4	0.975	INTRON Mp
X	12385568	X_12385568_SNP [dm3] X_12491535_SNP [dm6]	C	T	4.971e^-4	0.975	SYNONYMOUS_CODING Lsp1alpha	TF binding site mE1_TFBS_sens
3R	27211564	3R_27211564_SNP [dm3] 3R_31385842_SNP [dm6]	G	T	4.973e^-4	0.975	INTRON CG1607
2L	3974407	2L_3974407_DEL [dm3] 2L_3974407_DEL [dm6]	TTTATTT	T	5.023e^-4	0.975	INTRON fred
X	4690359	X_4690359_SNP [dm3] X_4796326_SNP [dm6]	G	C	5.029e^-4	0.975	DOWNSTREAM CG2861 INTERGENIC
2R	10712841	2R_10712841_DEL [dm3] 2R_14825336_DEL [dm6]	CCATTCGCTTTCTGTTC...	C	5.038e^-4	0.975	UPSTREAM CR45329 INTERGENIC
3R	14555493	3R_14555493_SNP [dm3] 3R_18729771_SNP [dm6]	C	T	5.040e^-4	0.975	SYNONYMOUS_CODING Cha	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24409775	3R_24409775_SNP [dm3] 3R_28584053_SNP [dm6]	C	T	5.043e^-4	0.975	SYNONYMOUS_CODING fkh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10020917	3L_10020917_SNP [dm3] 3L_10027817_SNP [dm6]	C	A	5.044e^-4	0.975	INTRON dpr6
3L	18355415	3L_18355415_DEL [dm3] 3L_18362315_DEL [dm6]	CATCGGAAA	C	5.054e^-4	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	6293910	2L_6293910_SNP [dm3] 2L_6293910_SNP [dm6]	G	T	5.057e^-4	0.975	INTRON Ddr
2R	5282991	2R_5282991_SNP [dm3] 2R_9395486_SNP [dm6]	G	T	5.085e^-4	0.975	SYNONYMOUS_CODING CG8800 DOWNSTREAM CG8801 & 1 other	TF binding site mE1_TFBS_cad
3R	15126021	3R_15126021_SNP [dm3] 3R_19300299_SNP [dm6]	A	T	5.087e^-4	0.975	INTERGENIC
2L	6565848	2L_6565848_SNP [dm3] 2L_6565848_SNP [dm6]	G	A	5.091e^-4	0.975	SYNONYMOUS_CODING CG13766	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	6329270	2R_6329270_SNP [dm3] 2R_10441765_SNP [dm6]	A	G	5.095e^-4	0.975	INTRON Galphao
3L	5204637	3L_5204637_SNP [dm3] 3L_5211537_SNP [dm6]	A	T	5.097e^-4	0.975	INTRON shep
3L	8158419	3L_8158419_SNP [dm3] 3L_8165319_SNP [dm6]	G	A	5.097e^-4	0.975	UPSTREAM CG13675 INTRON CG13675
3L	12587589	3L_12587589_SNP [dm3] 3L_12594489_SNP [dm6]	T	C	5.099e^-4	0.975	SYNONYMOUS_CODING ara	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	19959896	X_19959896_DEL [dm3] X_20065863_DEL [dm6]	TTGAAACTTAATGGTCTTCT...	T	5.103e^-4	0.975	INTERGENIC
2L	3985015	2L_3985015_SNP [dm3] 2L_3985015_SNP [dm6]	C	A	5.106e^-4	0.975	INTRON fred
X	10031098	X_10031098_SNP [dm3] X_10137065_SNP [dm6]	A	C	5.110e^-4	0.975	INTRON CR44894 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8587779	2R_8587779_SNP [dm3] 2R_12700274_SNP [dm6]	C	G	5.111e^-4	0.975	UTR_5_PRIME wuc INTRON wuc
2L	13187412	2L_13187412_SNP [dm3] 2L_13187412_SNP [dm6]	G	A	5.115e^-4	0.975	INTRON CG16974
2R	8127368	2R_8127368_SNP [dm3] 2R_12239863_SNP [dm6]	T	A	5.122e^-4	0.975	UPSTREAM CG13170 INTERGENIC
2R	8127372	2R_8127372_SNP [dm3] 2R_12239867_SNP [dm6]	A	G	5.122e^-4	0.975	UPSTREAM CG13170 INTERGENIC
3L	14618994	3L_14618994_SNP [dm3] 3L_14625894_SNP [dm6]	A	C	5.127e^-4	0.975	INTRON CG9628	TF binding site BDTNP1_TFBS_dl
3L	14618998	3L_14618998_SNP [dm3] 3L_14625898_SNP [dm6]	T	G	5.127e^-4	0.975	INTRON CG9628	TF binding site BDTNP1_TFBS_dl
3L	14619002	3L_14619002_SNP [dm3] 3L_14625902_SNP [dm6]	T	C	5.127e^-4	0.975	INTRON CG9628	TF binding site BDTNP1_TFBS_dl
3R	9035876	3R_9035876_SNP [dm3] 3R_13210154_SNP [dm6]	C	T	5.130e^-4	0.975	SYNONYMOUS_CODING CG8483
2L	7505442	2L_7505442_SNP [dm3] 2L_7505442_SNP [dm6]	G	A	5.138e^-4	0.975	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	9113299	3L_9113299_SNP [dm3] 3L_9120199_SNP [dm6]	C	T	5.138e^-4	0.975	INTRON bol
3L	9113306	3L_9113306_SNP [dm3] 3L_9120206_SNP [dm6]	C	G	5.138e^-4	0.975	INTRON bol
2R	19833846	2R_19833846_SNP [dm3] 2R_23946323_SNP [dm6]	A	T	5.142e^-4	0.975	DOWNSTREAM CG13565 INTRON Galphas
3L	12874728	3L_12874728_SNP [dm3] 3L_12881628_SNP [dm6]	G	C	5.147e^-4	0.975	INTERGENIC
2L	8652799	2L_8652799_SNP [dm3] 2L_8652799_SNP [dm6]	G	A	5.151e^-4	0.975	INTRON Sema-1a
3R	23700235	3R_23700235_SNP [dm3] 3R_27874513_SNP [dm6]	C	G	5.153e^-4	0.975	INTRON CG34353
3R	22009997	3R_22009997_SNP [dm3] 3R_26184275_SNP [dm6]	G	A	5.154e^-4	0.975	UPSTREAM CG31086 INTRON CG31323	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	7002784	3L_7002784_SNP [dm3] 3L_7009684_SNP [dm6]	A	T	5.158e^-4	0.975	INTRON Mp
X	20431778	X_20431778_SNP [dm3] X_20560751_SNP [dm6]	T	G	5.182e^-4	0.975	INTRON RunxB
2L	1197507	2L_1197507_INS [dm3] 2L_1197507_INS [dm6]	G	GACGAGGATGG...	5.185e^-4	0.975	DOWNSTREAM CG5001 & 1 other INTERGENIC
X	13381045	X_13381045_SNP [dm3] X_13487012_SNP [dm6]	T	C	5.199e^-4	0.975	INTRON Neto
X	13381047	X_13381047_SNP [dm3] X_13487014_SNP [dm6]	T	C	5.199e^-4	0.975	INTRON Neto
2R	6735815	2R_6735815_DEL [dm3] 2R_10848310_DEL [dm6]	AAA	G	5.200e^-4	0.975	INTRON CG30015
3R	9815091	3R_9815091_SNP [dm3] 3R_13989369_SNP [dm6]	A	C	5.205e^-4	0.975	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	3102510	3L_3102510_SNP [dm3] 3L_3102510_SNP [dm6]	A	C	5.205e^-4	0.975	INTRON Cht7
2L	3167578	2L_3167578_SNP [dm3] 2L_3167578_SNP [dm6]	A	G	5.208e^-4	0.975	INTRON Hydr2
3L	4294493	3L_4294493_SNP [dm3] 3L_4294493_SNP [dm6]	G	A	5.211e^-4	0.975	UTR_3_PRIME dyl	TF binding site mE1_TFBS_cad
3L	16876019	3L_16876019_SNP [dm3] 3L_16882919_SNP [dm6]	T	G	5.214e^-4	0.975	INTRON Lmpt
3L	13037095	3L_13037095_SNP [dm3] 3L_13043995_SNP [dm6]	A	T	5.223e^-4	0.975	UTR_3_PRIME RpS4 UPSTREAM Syx13 DOWNSTREAM snoRNA:Psi28S-3327b & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	16821746	2L_16821746_SNP [dm3] 2L_16821746_SNP [dm6]	T	C	5.234e^-4	0.975	NON_SYNONYMOUS_CODING Cas UPSTREAM CG13280 INTRON mdy
3R	9961536	3R_9961536_SNP [dm3] 3R_14135814_SNP [dm6]	C	T	5.252e^-4	0.975	INTERGENIC
X	6350429	X_6350429_SNP [dm3] X_6456396_SNP [dm6]	T	G	5.256e^-4	0.975	INTRON CG42340
X	6350481	X_6350481_SNP [dm3] X_6456448_SNP [dm6]	C	A	5.256e^-4	0.975	INTRON CG42340
X	6350482	X_6350482_SNP [dm3] X_6456449_SNP [dm6]	A	G	5.256e^-4	0.975	INTRON CG42340
3L	14106880	3L_14106880_DEL [dm3] 3L_14113780_DEL [dm6]	TTAAAATACT	T	5.264e^-4	0.975	INTRON Sox21b
2L	9132306	2L_9132306_SNP [dm3] 2L_9132306_SNP [dm6]	A	T	5.265e^-4	0.975	INTRON CG32982
2L	7995744	2L_7995744_SNP [dm3] 2L_7995744_SNP [dm6]	T	C	5.269e^-4	0.975	INTRON CG7227 EXON CR44996	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	7995745	2L_7995745_SNP [dm3] 2L_7995745_SNP [dm6]	C	G	5.269e^-4	0.975	INTRON CG7227 EXON CR44996	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	2058670	2L_2058670_SNP [dm3] 2L_2058670_SNP [dm6]	C	A	5.279e^-4	0.975	DOWNSTREAM dpr3 & 1 other INTERGENIC
3L	18269976	3L_18269976_SNP [dm3] 3L_18276876_SNP [dm6]	C	T	5.282e^-4	0.975	INTERGENIC
3L	18269977	3L_18269977_SNP [dm3] 3L_18276877_SNP [dm6]	T	G	5.282e^-4	0.975	INTERGENIC
3L	9113339	3L_9113339_SNP [dm3] 3L_9120239_SNP [dm6]	C	T	5.282e^-4	0.975	INTRON bol
3L	9113341	3L_9113341_SNP [dm3] 3L_9120241_SNP [dm6]	A	C	5.282e^-4	0.975	INTRON bol
3L	9113360	3L_9113360_SNP [dm3] 3L_9120260_SNP [dm6]	A	T	5.282e^-4	0.975	INTRON bol
3L	9113362	3L_9113362_SNP [dm3] 3L_9120262_SNP [dm6]	C	T	5.282e^-4	0.975	INTRON bol
2R	11545022	2R_11545022_SNP [dm3] 2R_15657517_SNP [dm6]	G	T	5.295e^-4	0.975	UTR_3_PRIME fus DOWNSTREAM mir-278 & 1 other	TF binding site mE1_TFBS_bab1
3R	14465583	3R_14465583_SNP [dm3] 3R_18639861_SNP [dm6]	C	G	5.299e^-4	0.975	INTRON qin & 1 other
3R	14027588	3R_14027588_SNP [dm3] 3R_18201866_SNP [dm6]	G	A	5.310e^-4	0.975	INTRON CG7985
3L	12587609	3L_12587609_SNP [dm3] 3L_12594509_SNP [dm6]	T	G	5.311e^-4	0.975	NON_SYNONYMOUS_CODING ara	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	784125	3L_784125_SNP [dm3] 3L_784125_SNP [dm6]	A	T	5.315e^-4	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9085129	3L_9085129_SNP [dm3] 3L_9092029_SNP [dm6]	A	G	5.326e^-4	0.975	UTR_3_PRIME Tequila
3L	5181362	3L_5181362_SNP [dm3] 3L_5188262_SNP [dm6]	T	A	5.329e^-4	0.975	INTRON shep	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	19625780	3L_19625780_SNP [dm3] 3L_19632680_SNP [dm6]	G	A	5.331e^-4	0.975	START_GAINED wnd UTR_5_PRIME wnd INTRON wnd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	8717028	3R_8717028_SNP [dm3] 3R_12891306_SNP [dm6]	C	G	5.332e^-4	0.975	UPSTREAM d-cup DOWNSTREAM CR44235 INTERGENIC
2R	15742494	2R_15742494_SNP [dm3] 2R_19854989_SNP [dm6]	G	T	5.334e^-4	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
3R	26433864	3R_26433864_SNP [dm3] 3R_30608142_SNP [dm6]	C	T	5.338e^-4	0.975	NON_SYNONYMOUS_CODING CG31016
3L	2353118	3L_2353118_SNP [dm3] 3L_2353118_SNP [dm6]	T	A	5.339e^-4	0.975	INTERGENIC
2R	13514569	2R_13514569_INS [dm3] 2R_17627064_INS [dm6]	A	AACAAA	5.340e^-4	0.975	INTRON CG10936
3L	6325311	3L_6325311_INS [dm3] 3L_6332211_INS [dm6]	A	AAGAGA	5.341e^-4	0.975	INTRON CG13300	TF binding site mE1_TFBS_chinmo
2R	3502203	2R_3502203_SNP [dm3] 2R_7614698_SNP [dm6]	T	G	5.343e^-4	0.975	UPSTREAM CG1358 INTRON CG1358	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10020903	3L_10020903_SNP [dm3] 3L_10027803_SNP [dm6]	A	T	5.343e^-4	0.975	INTRON dpr6
3R	8695552	3R_8695552_SNP [dm3] 3R_12869830_SNP [dm6]	A	T	5.347e^-4	0.975	INTERGENIC
3R	15262087	3R_15262087_SNP [dm3] 3R_19436365_SNP [dm6]	T	C	5.348e^-4	0.975	INTRON CG31221
2R	9598547	2R_9598547_SNP [dm3] 2R_13711042_SNP [dm6]	C	T	5.354e^-4	0.975	INTRON fas	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	7559305	2L_7559305_SNP [dm3] 2L_7559305_SNP [dm6]	T	C	5.362e^-4	0.975	INTRON RapGAP1
3R	5722162	3R_5722162_SNP [dm3] 3R_9896440_SNP [dm6]	G	A	5.368e^-4	0.975	INTRON Glut4EF
3R	17740413	3R_17740413_SNP [dm3] 3R_21914691_SNP [dm6]	G	C	5.375e^-4	0.975	SYNONYMOUS_CODING CG17843
2R	9595718	2R_9595718_SNP [dm3] 2R_13708213_SNP [dm6]	G	T	5.382e^-4	0.975	INTRON fas
3L	5276700	3L_5276700_SNP [dm3] 3L_5283600_SNP [dm6]	A	T	5.393e^-4	0.975	INTERGENIC
3L	5276722	3L_5276722_SNP [dm3] 3L_5283622_SNP [dm6]	C	A	5.393e^-4	0.975	INTERGENIC
3L	2655573	3L_2655573_DEL [dm3] 3L_2655573_DEL [dm6]	GGTAA	G	5.398e^-4	0.975	UTR_3_PRIME Fife DOWNSTREAM Snup & 1 other
3L	2655581	3L_2655581_DEL [dm3] 3L_2655581_DEL [dm6]	CTAAGTTATTCTTTA...	T	5.398e^-4	0.975	UTR_3_PRIME Fife DOWNSTREAM Snup & 1 other
3L	10699469	3L_10699469_DEL [dm3] 3L_10706369_DEL [dm6]	AGGTAAAAACG...	A	5.411e^-4	0.975	INTERGENIC
3R	20241331	3R_20241331_SNP [dm3] 3R_24415609_SNP [dm6]	A	T	5.412e^-4	0.975	INTRON nAChRalpha1
2R	14583678	2R_14583678_SNP [dm3] 2R_18696173_SNP [dm6]	G	A	5.422e^-4	0.975	UPSTREAM CG15071 INTRON Sik3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5282899	2R_5282899_SNP [dm3] 2R_9395394_SNP [dm6]	A	C	5.427e^-4	0.975	UTR_3_PRIME CG8800 DOWNSTREAM CG8801 & 1 other	TF binding site mE1_TFBS_cad
2L	16460499	2L_16460499_DEL [dm3] 2L_16460499_DEL [dm6]	GG	G	5.447e^-4	0.975	INTERGENIC	regulatory region REDfly_CRMs
3L	3279324	3L_3279324_SNP [dm3] 3L_3279324_SNP [dm6]	G	T	5.460e^-4	0.975	UPSTREAM CG12017 INTERGENIC
2R	6035350	2R_6035350_SNP [dm3] 2R_10147845_SNP [dm6]	C	A	5.463e^-4	0.975	INTRON KCNQ
2R	16621779	2R_16621779_SNP [dm3] 2R_20734274_SNP [dm6]	C	T	5.470e^-4	0.975	INTRON dpr
3L	11244388	3L_11244388_SNP [dm3] 3L_11251288_SNP [dm6]	T	A	5.476e^-4	0.975	UPSTREAM CR44716 DOWNSTREAM CR44717 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
3L	11244397	3L_11244397_SNP [dm3] 3L_11251297_SNP [dm6]	A	T	5.476e^-4	0.975	UPSTREAM CR44716 DOWNSTREAM CR44717 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2R	6327586	2R_6327586_SNP [dm3] 2R_10440081_SNP [dm6]	C	T	5.481e^-4	0.975	INTRON Galphao	TF binding site BDTNP1_TFBS_twi
2R	6327587	2R_6327587_INS [dm3] 2R_10440082_INS [dm6]	C	CG	5.481e^-4	0.975	INTRON Galphao	TF binding site BDTNP1_TFBS_twi
3R	25190378	3R_25190378_SNP [dm3] 3R_29364656_SNP [dm6]	C	G	5.481e^-4	0.975	INTERGENIC
2R	12571238	2R_12571238_SNP [dm3] 2R_16683733_SNP [dm6]	G	A	5.486e^-4	0.975	INTRON CG30463
3L	18544739	3L_18544739_SNP [dm3] 3L_18551639_SNP [dm6]	C	T	5.490e^-4	0.975	INTERGENIC
3R	14534556	3R_14534556_SNP [dm3] 3R_18708834_SNP [dm6]	A	G	5.492e^-4	0.975	INTRON VAChT & 1 other
2R	16984914	2R_16984914_SNP [dm3] 2R_21097409_SNP [dm6]	G	T	5.495e^-4	0.975	UPSTREAM CG34396 & 1 other INTRON CG34396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6387825	3R_6387825_SNP [dm3] 3R_10562103_SNP [dm6]	G	C	5.496e^-4	0.975	INTRON hth
3L	14226164	3L_14226164_SNP [dm3] 3L_14233064_SNP [dm6]	T	A	5.497e^-4	0.975	UTR_3_PRIME nuf UPSTREAM CG7924 DOWNSTREAM nuf
X	4839209	X_4839209_SNP [dm3] X_4945176_SNP [dm6]	G	A	5.504e^-4	0.975	INTRON Ptp4E
3L	3595118	3L_3595118_SNP [dm3] 3L_3595118_SNP [dm6]	G	C	5.516e^-4	0.975	INTRON Eip63E
3R	16991774	3R_16991774_SNP [dm3] 3R_21166052_SNP [dm6]	C	T	5.517e^-4	0.975	DOWNSTREAM CG5810 INTRON SNF4Agamma & 1 other
2L	8171825	2L_8171825_SNP [dm3] 2L_8171825_SNP [dm6]	T	C	5.518e^-4	0.975	INTRON Piezo
3R	14282906	3R_14282906_SNP [dm3] 3R_18457184_SNP [dm6]	G	A	5.519e^-4	0.975	INTRON fru
3R	14282948	3R_14282948_SNP [dm3] 3R_18457226_SNP [dm6]	A	G	5.519e^-4	0.975	INTRON fru
3R	14282987	3R_14282987_SNP [dm3] 3R_18457265_SNP [dm6]	G	A	5.519e^-4	0.975	INTRON fru
3R	14282997	3R_14282997_SNP [dm3] 3R_18457275_SNP [dm6]	A	T	5.519e^-4	0.975	INTRON fru
2L	7504771	2L_7504771_SNP [dm3] 2L_7504771_SNP [dm6]	G	A	5.528e^-4	0.975	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	7289924	2R_7289924_SNP [dm3] 2R_11402419_SNP [dm6]	C	T	5.529e^-4	0.975	INTERGENIC
2L	7559420	2L_7559420_SNP [dm3] 2L_7559420_SNP [dm6]	G	A	5.530e^-4	0.975	INTRON RapGAP1
2R	4736829	2R_4736829_SNP [dm3] 2R_8849324_SNP [dm6]	C	T	5.538e^-4	0.975	INTRON sns
3R	3815046	3R_3815046_SNP [dm3] 3R_7989324_SNP [dm6]	A	G	5.538e^-4	0.975	INTRON CG2781
X	20434979	X_20434979_SNP [dm3] X_20563952_SNP [dm6]	C	A	5.541e^-4	0.975	INTRON RunxB
3R	8499926	3R_8499926_SNP [dm3] 3R_12674204_SNP [dm6]	T	G	5.562e^-4	0.975	UPSTREAM CG6188 DOWNSTREAM CG14395 INTERGENIC
3L	11385612	3L_11385612_SNP [dm3] 3L_11392512_SNP [dm6]	C	T	5.570e^-4	0.975	INTERGENIC
3L	18544783	3L_18544783_SNP [dm3] 3L_18551683_SNP [dm6]	G	A	5.580e^-4	0.975	INTERGENIC
3R	27191114	3R_27191114_SNP [dm3] 3R_31365392_SNP [dm6]	A	G	5.587e^-4	0.975	INTRON CG34347
X	6177836	X_6177836_SNP [dm3] X_6283803_SNP [dm6]	G	A	5.594e^-4	0.975	UPSTREAM CG11700 DOWNSTREAM Top3beta INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	5283670	2R_5283670_SNP [dm3] 2R_9396165_SNP [dm6]	T	C	5.596e^-4	0.975	START_GAINED CG8800 UTR_5_PRIME CG8800 DOWNSTREAM CG8801 & 1 other
2R	19925204	2R_19925204_SNP [dm3] 2R_24037681_SNP [dm6]	C	G	5.603e^-4	0.975	UTR_5_PRIME Not11 UPSTREAM IntS1 DOWNSTREAM MAN1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	4203355	X_4203355_SNP [dm3] X_4309322_SNP [dm6]	T	A	5.614e^-4	0.975	INTERGENIC
3L	18304785	3L_18304785_MNP [dm3] 3L_18311685_MNP [dm6]	TAT	ATG	5.616e^-4	0.975	INTERGENIC
3L	18304821	3L_18304821_SNP [dm3] 3L_18311721_SNP [dm6]	A	T	5.616e^-4	0.975	INTERGENIC
3L	18304833	3L_18304833_SNP [dm3] 3L_18311733_SNP [dm6]	T	C	5.616e^-4	0.975	INTERGENIC
3L	18304853	3L_18304853_SNP [dm3] 3L_18311753_SNP [dm6]	T	C	5.616e^-4	0.975	INTERGENIC
3L	18304861	3L_18304861_SNP [dm3] 3L_18311761_SNP [dm6]	C	T	5.616e^-4	0.975	INTERGENIC
2L	2537616	2L_2537616_SNP [dm3] 2L_2537616_SNP [dm6]	C	T	5.625e^-4	0.975	INTERGENIC
X	21295882	X_21295882_SNP [dm3] X_21424855_SNP [dm6]	C	A	5.629e^-4	0.975	SYNONYMOUS_CODING CG42343	TF binding site BDTNP1_TFBS_da
2R	9777067	2R_9777067_SNP [dm3] 2R_13889562_SNP [dm6]	T	G	5.629e^-4	0.975	NON_SYNONYMOUS_CODING shot INTRON shot
3R	27618802	3R_27618802_SNP [dm3] 3R_31793080_SNP [dm6]	G	A	5.633e^-4	0.975	SYNONYMOUS_CODING CG2118 UPSTREAM Acf1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	23508188	3R_23508188_SNP [dm3] 3R_27682466_SNP [dm6]	G	A	5.653e^-4	0.975	UPSTREAM Sce INTERGENIC
3R	15137458	3R_15137458_SNP [dm3] 3R_19311736_SNP [dm6]	C	A	5.658e^-4	0.975	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	15137459	3R_15137459_SNP [dm3] 3R_19311737_SNP [dm6]	C	A	5.658e^-4	0.975	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	15137469	3R_15137469_SNP [dm3] 3R_19311747_SNP [dm6]	T	C	5.658e^-4	0.975	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	18620559	3L_18620559_SNP [dm3] 3L_18627459_SNP [dm6]	A	C	5.663e^-4	0.975	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12282676	3L_12282676_SNP [dm3] 3L_12289576_SNP [dm6]	C	G	5.663e^-4	0.975	EXON CR45658
3R	24455064	3R_24455064_SNP [dm3] 3R_28629342_SNP [dm6]	C	T	5.671e^-4	0.975	INTRON CG10011
3R	3440869	3R_3440869_SNP [dm3] 3R_7615147_SNP [dm6]	A	T	5.672e^-4	0.975	INTRON CG34127
X	6219668	X_6219668_SNP [dm3] X_6325635_SNP [dm6]	G	A	5.673e^-4	0.975	SYNONYMOUS_CODING CG15894	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	6181881	2R_6181881_SNP [dm3] 2R_10294376_SNP [dm6]	T	C	5.681e^-4	0.975	INTRON CAP	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1478243	3L_1478243_SNP [dm3] 3L_1478243_SNP [dm6]	T	C	5.701e^-4	0.975	UTR_3_PRIME robl62A DOWNSTREAM robl62A INTRON stet
X	18395693	X_18395693_SNP [dm3] X_18501660_SNP [dm6]	T	A	5.701e^-4	0.975	UTR_3_PRIME Wnt5 DOWNSTREAM Rad51D
3L	14833497	3L_14833497_SNP [dm3] 3L_14840397_SNP [dm6]	C	A	5.710e^-4	0.975	INTRON CG17839
3R	6990873	3R_6990873_SNP [dm3] 3R_11165151_SNP [dm6]	A	C	5.721e^-4	0.975	NON_SYNONYMOUS_CODING Ugt86Dg	TF binding site mE1_TFBS_HSA
2R	10228422	2R_10228422_SNP [dm3] 2R_14340917_SNP [dm6]	T	G	5.731e^-4	0.975	INTRON Shroom
2R	15133509	2R_15133509_SNP [dm3] 2R_19246004_SNP [dm6]	G	A	5.733e^-4	0.975	INTERGENIC
3L	6311421	3L_6311421_SNP [dm3] 3L_6318321_SNP [dm6]	G	A	5.738e^-4	0.975	INTERGENIC	regulatory region REDfly_CRMs
2L	17698390	2L_17698390_SNP [dm3] 2L_17698390_SNP [dm6]	A	T	5.742e^-4	0.975	INTRON CadN
3L	2442988	3L_2442988_SNP [dm3] 3L_2442988_SNP [dm6]	C	T	5.748e^-4	0.975	INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2443081	3L_2443081_INS [dm3] 3L_2443081_INS [dm6]	G	GTG	5.769e^-4	0.975	INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
4	509697	4_509697_DEL [dm3] 4_489071_DEL [dm6]	TACAT	A	5.772e^-4	0.975	UPSTREAM Asator INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10452450	2R_10452450_SNP [dm3] 2R_14564945_SNP [dm6]	C	T	5.777e^-4	0.975	INTRON ttv
2L	9644065	2L_9644065_SNP [dm3] 2L_9644065_SNP [dm6]	T	C	5.781e^-4	0.975	SYNONYMOUS_CODING Apoltp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10547711	2L_10547711_SNP [dm3] 2L_10547711_SNP [dm6]	T	G	5.789e^-4	0.975	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna
2L	10547904	2L_10547904_SNP [dm3] 2L_10547904_SNP [dm6]	G	A	5.789e^-4	0.975	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	10547905	2L_10547905_SNP [dm3] 2L_10547905_SNP [dm6]	G	T	5.789e^-4	0.975	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	27613760	3R_27613760_SNP [dm3] 3R_31788038_SNP [dm6]	C	G	5.792e^-4	0.975	SYNONYMOUS_CODING faf	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9464953	2L_9464953_MNP [dm3] 2L_9464953_MNP [dm6]	TTGT	GACA	5.794e^-4	0.975	DOWNSTREAM numb INTERGENIC	TF binding site mE1_TFBS_bab1
X	5866825	X_5866825_SNP [dm3] X_5972792_SNP [dm6]	G	A	5.797e^-4	0.975	INTRON Grip
2R	20084583	2R_20084583_SNP [dm3] 2R_24197060_SNP [dm6]	A	G	5.806e^-4	0.975	UPSTREAM CG3356 DOWNSTREAM cN-IIIB INTERGENIC
3L	11385660	3L_11385660_DEL [dm3] 3L_11392560_DEL [dm6]	GG	G	5.816e^-4	0.975	INTERGENIC
3L	9373400	3L_9373400_SNP [dm3] 3L_9380300_SNP [dm6]	A	G	5.824e^-4	0.975	UPSTREAM Hsp67Ba EXON CR43481	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9373403	3L_9373403_SNP [dm3] 3L_9380303_SNP [dm6]	C	T	5.824e^-4	0.975	UPSTREAM Hsp67Ba EXON CR43481	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18732111	X_18732111_SNP [dm3] X_18838078_SNP [dm6]	T	C	5.827e^-4	0.975	SPLICE_SITE_REGION Pvf1 SYNONYMOUS_CODING Pvf1 INTRON Pvf1
2L	10871914	2L_10871914_SNP [dm3] 2L_10871914_SNP [dm6]	C	A	5.831e^-4	0.975	UPSTREAM CR45454 DOWNSTREAM CR45453 INTERGENIC
2R	11139686	2R_11139686_SNP [dm3] 2R_15252181_SNP [dm6]	T	C	5.839e^-4	0.975	UPSTREAM scb INTRON scb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	17064785	3R_17064785_SNP [dm3] 3R_21239063_SNP [dm6]	A	G	5.847e^-4	0.975	INTERGENIC	regulatory region REDfly_CRMs
3R	17249281	3R_17249281_SNP [dm3] 3R_21423559_SNP [dm6]	G	T	5.851e^-4	0.975	INTRON lbl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da
2L	10540177	2L_10540177_SNP [dm3] 2L_10540177_SNP [dm6]	C	A	5.857e^-4	0.975	INTERGENIC
2R	3740457	2R_3740457_SNP [dm3] 2R_7852952_SNP [dm6]	A	G	5.860e^-4	0.975	INTRON Dgk
2L	7641057	2L_7641057_SNP [dm3] 2L_7641057_SNP [dm6]	G	A	5.866e^-4	0.975	DOWNSTREAM Slob INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	13718814	2L_13718814_SNP [dm3] 2L_13718814_SNP [dm6]	A	G	5.870e^-4	0.975	INTERGENIC
3L	12564497	3L_12564497_SNP [dm3] 3L_12571397_SNP [dm6]	T	C	5.891e^-4	0.975	INTRON sowah	TF binding site mE1_TFBS_cad
3L	13735309	3L_13735309_SNP [dm3] 3L_13742209_SNP [dm6]	A	G	5.901e^-4	0.975	INTRON bru-3
3L	2659452	3L_2659452_SNP [dm3] 3L_2659452_SNP [dm6]	A	T	5.912e^-4	0.975	UPSTREAM CG33233 INTRON Fife	TF binding site mE1_TFBS_chinmo
3L	12273919	3L_12273919_SNP [dm3] 3L_12280819_SNP [dm6]	A	G	5.913e^-4	0.975	SYNONYMOUS_CODING CG10426	TF binding site mE1_TFBS_sens
2R	18976288	2R_18976288_SNP [dm3] 2R_23088765_SNP [dm6]	G	A	5.935e^-4	0.975	DOWNSTREAM CG13538 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18976293	2R_18976293_SNP [dm3] 2R_23088770_SNP [dm6]	A	T	5.935e^-4	0.975	DOWNSTREAM CG13538 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18976296	2R_18976296_SNP [dm3] 2R_23088773_SNP [dm6]	A	G	5.935e^-4	0.975	DOWNSTREAM CG13538 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	6510713	3L_6510713_SNP [dm3] 3L_6517613_SNP [dm6]	A	G	5.938e^-4	0.975	INTRON sfl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7002819	3L_7002819_SNP [dm3] 3L_7009719_SNP [dm6]	T	C	5.950e^-4	0.975	INTRON Mp
2L	4688907	2L_4688907_SNP [dm3] 2L_4688907_SNP [dm6]	G	C	5.952e^-4	0.975	UTR_3_PRIME Elba3 DOWNSTREAM CG3251
3R	14555312	3R_14555312_SNP [dm3] 3R_18729590_SNP [dm6]	T	A	5.952e^-4	0.975	INTRON Cha	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6073806	2R_6073806_SNP [dm3] 2R_10186301_SNP [dm6]	G	A	5.957e^-4	0.975	INTRON KCNQ
2R	18295551	2R_18295551_SNP [dm3] 2R_22408046_SNP [dm6]	C	T	5.960e^-4	0.975	UTR_3_PRIME CG6044 UPSTREAM ventrally-expressed-protein-D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	7505560	2L_7505560_SNP [dm3] 2L_7505560_SNP [dm6]	C	T	5.966e^-4	0.975	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	850689	3L_850689_SNP [dm3] 3L_850689_SNP [dm6]	G	A	5.982e^-4	0.975	SYNONYMOUS_CODING CG13889 UPSTREAM CG13890	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	5261010	2L_5261010_SNP [dm3] 2L_5261010_SNP [dm6]	G	A	5.998e^-4	0.975	INTRON tkv
X	4333591	X_4333591_INS [dm3] X_4439558_INS [dm6]	A	ATAGA	6.003e^-4	0.975	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
3R	19435647	3R_19435647_SNP [dm3] 3R_23609925_SNP [dm6]	C	A	6.003e^-4	0.975	INTRON CG31145

Missing results

By genomic position
Variant impact
Gene name

pc_FL_PElem_GC phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results