DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.168e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.02309

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	2.9953	0.0835

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1655 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	13328028	2L_13328028_DEL [dm3] 2L_13328028_DEL [dm6]	GCTATG	A	1.978e^-6	0.964	INTRON CG43778
3R	14449216	3R_14449216_SNP [dm3] 3R_18623494_SNP [dm6]	G	A	3.452e^-6	0.964	INTRON qin	TF binding site mE1_TFBS_inv
2R	18022014	2R_18022014_SNP [dm3] 2R_22134509_SNP [dm6]	G	A	4.791e^-6	0.964	INTERGENIC
2R	18022102	2R_18022102_SNP [dm3] 2R_22134597_SNP [dm6]	G	A	5.474e^-6	0.964	INTERGENIC
2L	1902004	2L_1902004_SNP [dm3] 2L_1902004_SNP [dm6]	A	G	5.971e^-6	0.964	INTRON CG7337
2L	2965147	2L_2965147_SNP [dm3] 2L_2965147_SNP [dm6]	A	G	6.237e^-6	0.964	UTR_3_PRIME Rbp9 DOWNSTREAM Rbp9
2R	15420871	2R_15420871_SNP [dm3] 2R_19533366_SNP [dm6]	T	A	7.057e^-6	0.964	INTRON sm
3R	5121457	3R_5121457_SNP [dm3] 3R_9295735_SNP [dm6]	A	G	7.171e^-6	0.964	SYNONYMOUS_CODING CG8861
3R	22563163	3R_22563163_SNP [dm3] 3R_26737441_SNP [dm6]	T	C	8.185e^-6	0.964	UPSTREAM CG14247 INTERGENIC
3L	13112945	3L_13112945_SNP [dm3] 3L_13119845_SNP [dm6]	A	T	8.334e^-6	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2R	20107921	2R_20107921_SNP [dm3] 2R_24220398_SNP [dm6]	C	T	8.959e^-6	0.964	INTRON CG30419
2L	13286109	2L_13286109_SNP [dm3] 2L_13286109_SNP [dm6]	C	T	1.182e^-5	0.964	UPSTREAM Uvrag INTRON Drep-4 EXON CR44083	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	13215115	3L_13215115_SNP [dm3] 3L_13222015_SNP [dm6]	G	A	1.235e^-5	0.964	INTERGENIC
2L	13711478	2L_13711478_SNP [dm3] 2L_13711478_SNP [dm6]	T	A	1.334e^-5	0.964	DOWNSTREAM CG7311 INTRON CG31814
2L	7684261	2L_7684261_SNP [dm3] 2L_7684261_SNP [dm6]	A	G	1.582e^-5	0.964	UTR_3_PRIME Myo28B1 DOWNSTREAM CR44148 INTRON Myo28B1
2R	13801109	2R_13801109_SNP [dm3] 2R_17913604_SNP [dm6]	T	C	1.652e^-5	0.964	INTRON Elk
3L	13215116	3L_13215116_SNP [dm3] 3L_13222016_SNP [dm6]	C	T	1.863e^-5	0.964	INTERGENIC
3L	13210612	3L_13210612_SNP [dm3] 3L_13217512_SNP [dm6]	C	G	1.898e^-5	0.964	DOWNSTREAM CR45098 EXON CR43914
2R	18962403	2R_18962403_SNP [dm3] 2R_23074880_SNP [dm6]	T	C	1.966e^-5	0.964	UTR_5_PRIME CG3085 UPSTREAM snoRNA:229 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15105633	X_15105633_SNP [dm3] X_15211600_SNP [dm6]	A	G	1.998e^-5	0.964	DOWNSTREAM CG5662 INTERGENIC
2L	11577871	2L_11577871_SNP [dm3] 2L_11577871_SNP [dm6]	T	A	2.056e^-5	0.964	INTERGENIC
2R	15673400	2R_15673400_SNP [dm3] 2R_19785895_SNP [dm6]	G	T	2.107e^-5	0.964	EXON CR45231	regulatory region REDfly_CRMs
3L	1848737	3L_1848737_SNP [dm3] 3L_1848737_SNP [dm6]	T	C	2.477e^-5	0.964	INTERGENIC
3L	13215111	3L_13215111_SNP [dm3] 3L_13222011_SNP [dm6]	C	T	2.490e^-5	0.964	INTERGENIC
X	15614937	X_15614937_SNP [dm3] X_15720904_SNP [dm6]	G	A	2.541e^-5	0.964	SYNONYMOUS_CODING CG8184	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2R	18021778	2R_18021778_SNP [dm3] 2R_22134273_SNP [dm6]	A	G	2.599e^-5	0.964	INTERGENIC
2R	18021821	2R_18021821_SNP [dm3] 2R_22134316_SNP [dm6]	C	T	2.599e^-5	0.964	INTERGENIC
2R	18021822	2R_18021822_SNP [dm3] 2R_22134317_SNP [dm6]	A	G	2.599e^-5	0.964	INTERGENIC
3L	1848757	3L_1848757_SNP [dm3] 3L_1848757_SNP [dm6]	G	A	2.659e^-5	0.964	INTERGENIC
3L	12094551	3L_12094551_SNP [dm3] 3L_12101451_SNP [dm6]	A	T	2.773e^-5	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	18022040	2R_18022040_SNP [dm3] 2R_22134535_SNP [dm6]	G	C	2.846e^-5	0.964	INTERGENIC
2L	13963497	2L_13963497_SNP [dm3] 2L_13963497_SNP [dm6]	A	G	2.860e^-5	0.964	UPSTREAM NimB1 DOWNSTREAM NimA INTERGENIC
2L	14005649	2L_14005649_SNP [dm3] 2L_14005649_SNP [dm6]	T	C	2.877e^-5	0.964	INTERGENIC
2L	13976987	2L_13976987_SNP [dm3] 2L_13976987_SNP [dm6]	G	A	2.984e^-5	0.964	UPSTREAM NimC1 & 1 other INTERGENIC
2R	11676477	2R_11676477_SNP [dm3] 2R_15788972_SNP [dm6]	T	G	3.080e^-5	0.964	INTRON Zasp52
3R	25367062	3R_25367062_DEL [dm3] 3R_29541340_DEL [dm6]	CTCGAGTGC	C	3.176e^-5	0.964	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	21288219	3R_21288219_SNP [dm3] 3R_25462497_SNP [dm6]	C	A	3.199e^-5	0.964	INTRON Fur1
X	2709528	X_2709528_SNP [dm3] X_2815495_SNP [dm6]	A	C	3.435e^-5	0.964	INTRON kirre
2R	18021840	2R_18021840_DEL [dm3] 2R_22134335_DEL [dm6]	TC	T	3.672e^-5	0.964	INTERGENIC
2R	20446945	2R_20446945_SNP [dm3] 2R_24559422_SNP [dm6]	G	A	3.720e^-5	0.964	UTR_3_PRIME Nurf-38 DOWNSTREAM ITP INTRON Nurf-38
3R	22750306	3R_22750306_SNP [dm3] 3R_26924584_SNP [dm6]	A	G	3.932e^-5	0.964	INTRON sda
X	15105613	X_15105613_SNP [dm3] X_15211580_SNP [dm6]	A	C	4.038e^-5	0.964	DOWNSTREAM CG5662 INTERGENIC
X	15105638	X_15105638_SNP [dm3] X_15211605_SNP [dm6]	G	A	4.038e^-5	0.964	DOWNSTREAM CG5662 INTERGENIC
2R	119721	2R_119721_SNP [dm3] 2R_4232216_SNP [dm6]	G	C	4.098e^-5	0.964	INTERGENIC
2R	18962374	2R_18962374_SNP [dm3] 2R_23074851_SNP [dm6]	T	C	4.112e^-5	0.964	UTR_5_PRIME CG3085 UPSTREAM snoRNA:229 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6954714	3L_6954714_SNP [dm3] 3L_6961614_SNP [dm6]	T	A	4.159e^-5	0.964	INTRON sgl
2L	2966823	2L_2966823_SNP [dm3] 2L_2966823_SNP [dm6]	T	A	4.269e^-5	0.964	UTR_3_PRIME Rbp9
2L	13284730	2L_13284730_SNP [dm3] 2L_13284730_SNP [dm6]	G	T	4.423e^-5	0.964	SYNONYMOUS_CODING Drep-4 UPSTREAM CR44083 DOWNSTREAM CG44085	TF binding site mE1_TFBS_cad
3R	13902722	3R_13902722_SNP [dm3] 3R_18077000_SNP [dm6]	G	A	4.503e^-5	0.964	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	20113973	2R_20113973_SNP [dm3] 2R_24226450_SNP [dm6]	T	C	4.508e^-5	0.964	INTRON CG30419
X	19037553	X_19037553_SNP [dm3] X_19143520_SNP [dm6]	A	C	4.705e^-5	0.964	UTR_3_PRIME RhoGAP18B
2L	14003529	2L_14003529_SNP [dm3] 2L_14003529_SNP [dm6]	A	G	4.783e^-5	0.964	INTERGENIC
3R	13902749	3R_13902749_SNP [dm3] 3R_18077027_SNP [dm6]	G	A	4.804e^-5	0.964	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	10241780	3L_10241780_SNP [dm3] 3L_10248680_SNP [dm6]	A	T	4.848e^-5	0.964	UPSTREAM CR44540 DOWNSTREAM CR44539 INTERGENIC
2R	18021838	2R_18021838_SNP [dm3] 2R_22134333_SNP [dm6]	C	T	4.865e^-5	0.964	INTERGENIC
3L	12094572	3L_12094572_SNP [dm3] 3L_12101472_SNP [dm6]	C	T	4.893e^-5	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	6752674	3L_6752674_SNP [dm3] 3L_6759574_SNP [dm6]	T	A	4.975e^-5	0.964	INTRON CG32392
2L	15635067	2L_15635067_SNP [dm3] 2L_15635067_SNP [dm6]	A	G	5.023e^-5	0.964	DOWNSTREAM CG18480 INTERGENIC
3L	15613828	3L_15613828_SNP [dm3] 3L_15620728_SNP [dm6]	T	C	5.039e^-5	0.964	SYNONYMOUS_CODING CG7372 INTRON comm3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3L	1853270	3L_1853270_SNP [dm3] 3L_1853270_SNP [dm6]	C	T	5.084e^-5	0.964	INTRON CG13936
3L	9791400	3L_9791400_SNP [dm3] 3L_9798300_SNP [dm6]	T	G	5.089e^-5	0.964	UPSTREAM Ilp1 & 2 others INTERGENIC
3L	1867336	3L_1867336_SNP [dm3] 3L_1867336_SNP [dm6]	T	C	5.092e^-5	0.964	SYNONYMOUS_CODING CG12025	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13711370	2L_13711370_SNP [dm3] 2L_13711370_SNP [dm6]	T	A	5.103e^-5	0.964	DOWNSTREAM CG7311 INTRON CG31814
X	15105628	X_15105628_SNP [dm3] X_15211595_SNP [dm6]	C	T	5.122e^-5	0.964	DOWNSTREAM CG5662 INTERGENIC
3L	7131490	3L_7131490_SNP [dm3] 3L_7138390_SNP [dm6]	C	A	5.218e^-5	0.964	UTR_5_PRIME melt INTRON melt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7684286	2L_7684286_SNP [dm3] 2L_7684286_SNP [dm6]	G	A	5.242e^-5	0.964	UTR_3_PRIME Myo28B1 DOWNSTREAM CR44148 INTRON Myo28B1
2R	3080452	2R_3080452_SNP [dm3] 2R_7192947_SNP [dm6]	G	A	5.498e^-5	0.964	UTR_5_PRIME pk INTRON pk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12343326	3R_12343326_SNP [dm3] 3R_16517604_SNP [dm6]	G	A	5.629e^-5	0.964	INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13999527	2L_13999527_SNP [dm3] 2L_13999527_SNP [dm6]	G	A	5.963e^-5	0.964	INTRON rk
2R	16240342	2R_16240342_SNP [dm3] 2R_20352837_SNP [dm6]	A	G	6.147e^-5	0.964	INTERGENIC
X	18401883	X_18401883_SNP [dm3] X_18507850_SNP [dm6]	G	T	6.448e^-5	0.964	SYNONYMOUS_CODING Ggt-1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	5358964	X_5358964_SNP [dm3] X_5464931_SNP [dm6]	A	C	6.460e^-5	0.964	UTR_5_PRIME SPR INTRON SPR
3L	1865490	3L_1865490_DEL [dm3] 3L_1865490_DEL [dm6]	TT	T	6.519e^-5	0.964	UTR_5_PRIME CG12025 UPSTREAM HBS1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	18962442	2R_18962442_DEL [dm3] 2R_23074919_DEL [dm6]	TTTT	T	6.562e^-5	0.964	UPSTREAM snoRNA:229 & 2 others INTRON CG3085	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19698647	3L_19698647_SNP [dm3] 3L_19705547_SNP [dm6]	T	G	6.608e^-5	0.964	INTRON serp
2L	10575763	2L_10575763_SNP [dm3] 2L_10575763_SNP [dm6]	T	C	6.830e^-5	0.964	DOWNSTREAM w-cup INTRON Trim9
3L	1391434	3L_1391434_SNP [dm3] 3L_1391434_SNP [dm6]	T	G	6.890e^-5	0.964	INTRON Ptp61F	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15705258	3L_15705258_SNP [dm3] 3L_15712158_SNP [dm6]	A	G	7.053e^-5	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
2R	20443466	2R_20443466_SNP [dm3] 2R_24555943_SNP [dm6]	C	T	7.070e^-5	0.964	SPLICE_SITE_REGION CG4622 UTR_5_PRIME CG4622 INTRON ITP
2L	9150191	2L_9150191_SNP [dm3] 2L_9150191_SNP [dm6]	G	C	7.106e^-5	0.964	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
X	15105650	X_15105650_DEL [dm3] X_15211617_DEL [dm6]	AA	T	7.195e^-5	0.964	DOWNSTREAM CG5662 INTERGENIC
3L	16166122	3L_16166122_SNP [dm3] 3L_16173022_SNP [dm6]	G	T	7.212e^-5	0.964	INTERGENIC
3R	13961636	3R_13961636_SNP [dm3] 3R_18135914_SNP [dm6]	A	G	7.272e^-5	0.964	DOWNSTREAM sr INTERGENIC
3R	21626974	3R_21626974_SNP [dm3] 3R_25801252_SNP [dm6]	A	G	7.300e^-5	0.964	INTERGENIC
3L	13312273	3L_13312273_SNP [dm3] 3L_13319173_SNP [dm6]	A	G	7.356e^-5	0.964	INTERGENIC
3L	13312295	3L_13312295_SNP [dm3] 3L_13319195_SNP [dm6]	T	A	7.356e^-5	0.964	INTERGENIC
2R	13801541	2R_13801541_SNP [dm3] 2R_17914036_SNP [dm6]	G	A	7.378e^-5	0.964	INTRON Elk
2L	13999491	2L_13999491_SNP [dm3] 2L_13999491_SNP [dm6]	C	A	7.445e^-5	0.964	INTRON rk
X	16018845	X_16018845_SNP [dm3] X_16124812_SNP [dm6]	T	G	7.504e^-5	0.964	UPSTREAM disco-r INTRON disco-r
2R	19575351	2R_19575351_SNP [dm3] 2R_23687828_SNP [dm6]	T	G	7.671e^-5	0.964	UTR_3_PRIME St3 UPSTREAM Pal2	TF binding site mE1_TFBS_cad
3L	2187166	3L_2187166_SNP [dm3] 3L_2187166_SNP [dm6]	A	G	7.858e^-5	0.964	SYNONYMOUS_CODING CG13810	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8183480	3L_8183480_INS [dm3] 3L_8190380_INS [dm6]	G	GACGGCG	7.982e^-5	0.964	UTR_3_PRIME Atg18a UPSTREAM MED24	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	1568423	X_1568423_SNP [dm3] X_1674390_SNP [dm6]	G	A	8.021e^-5	0.964	UTR_3_PRIME CG32809 DOWNSTREAM hfw & 1 other
3R	12343306	3R_12343306_SNP [dm3] 3R_16517584_SNP [dm6]	T	C	8.121e^-5	0.964	INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14327915	3L_14327915_SNP [dm3] 3L_14334815_SNP [dm6]	A	G	8.158e^-5	0.964	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	3140959	2R_3140959_SNP [dm3] 2R_7253454_SNP [dm6]	G	C	8.196e^-5	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	3140972	2R_3140972_SNP [dm3] 2R_7253467_SNP [dm6]	A	T	8.196e^-5	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	3140994	2R_3140994_SNP [dm3] 2R_7253489_SNP [dm6]	G	A	8.196e^-5	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	3141009	2R_3141009_SNP [dm3] 2R_7253504_SNP [dm6]	A	T	8.196e^-5	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	16954241	X_16954241_SNP [dm3] X_17060208_SNP [dm6]	T	C	8.251e^-5	0.964	INTRON CG45002
3R	13961639	3R_13961639_SNP [dm3] 3R_18135917_SNP [dm6]	G	C	8.295e^-5	0.964	DOWNSTREAM sr INTERGENIC
3L	1835054	3L_1835054_SNP [dm3] 3L_1835054_SNP [dm6]	G	A	8.325e^-5	0.964	UTR_5_PRIME Cpr62Bb INTRON Cpr62Bb
2L	7684242	2L_7684242_SNP [dm3] 2L_7684242_SNP [dm6]	C	T	8.374e^-5	0.964	UTR_3_PRIME Myo28B1 DOWNSTREAM CR44148 INTRON Myo28B1
2R	16295473	2R_16295473_SNP [dm3] 2R_20407968_SNP [dm6]	C	T	8.427e^-5	0.964	INTERGENIC
3L	16457924	3L_16457924_SNP [dm3] 3L_16464824_SNP [dm6]	T	A	8.445e^-5	0.964	INTRON CG33158
X	5940380	X_5940380_SNP [dm3] X_6046347_SNP [dm6]	A	G	8.468e^-5	0.964	SYNONYMOUS_CODING CG5937	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5940384	X_5940384_SNP [dm3] X_6046351_SNP [dm6]	C	T	8.468e^-5	0.964	SYNONYMOUS_CODING CG5937	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2964754	2L_2964754_SNP [dm3] 2L_2964754_SNP [dm6]	G	A	8.537e^-5	0.964	UTR_3_PRIME Rbp9	TF binding site mE1_TFBS_HSA
3L	1080600	3L_1080600_SNP [dm3] 3L_1080600_SNP [dm6]	G	A	8.617e^-5	0.964	INTRON bab1	TF binding site mE1_TFBS_chinmo
3L	1080611	3L_1080611_SNP [dm3] 3L_1080611_SNP [dm6]	A	G	8.617e^-5	0.964	INTRON bab1	TF binding site mE1_TFBS_chinmo
X	1568333	X_1568333_SNP [dm3] X_1674300_SNP [dm6]	T	G	8.648e^-5	0.964	UTR_3_PRIME CG32809 DOWNSTREAM hfw & 1 other
3L	6752669	3L_6752669_SNP [dm3] 3L_6759569_SNP [dm6]	T	C	8.714e^-5	0.964	INTRON CG32392
3L	6752671	3L_6752671_SNP [dm3] 3L_6759571_SNP [dm6]	C	T	8.714e^-5	0.964	INTRON CG32392
3L	6752673	3L_6752673_SNP [dm3] 3L_6759573_SNP [dm6]	A	G	8.714e^-5	0.964	INTRON CG32392
X	1568421	X_1568421_INS [dm3] X_1674388_INS [dm6]	G	GG	8.816e^-5	0.964	UTR_3_PRIME CG32809 DOWNSTREAM hfw & 1 other
2R	20028761	2R_20028761_SNP [dm3] 2R_24141238_SNP [dm6]	G	T	8.817e^-5	0.964	INTRON Dat
2R	20028771	2R_20028771_SNP [dm3] 2R_24141248_SNP [dm6]	G	A	8.817e^-5	0.964	INTRON Dat
2R	8548853	2R_8548853_SNP [dm3] 2R_12661348_SNP [dm6]	C	T	8.875e^-5	0.964	UTR_5_PRIME nemy INTRON nemy
2R	18025110	2R_18025110_SNP [dm3] 2R_22137605_SNP [dm6]	A	G	8.901e^-5	0.964	START_GAINED a UTR_5_PRIME a INTRON a
3L	10217131	3L_10217131_SNP [dm3] 3L_10224031_SNP [dm6]	C	G	9.002e^-5	0.964	SYNONYMOUS_CODING scramb1 UPSTREAM scramb1
X	9267606	X_9267606_SNP [dm3] X_9373573_SNP [dm6]	G	A	9.054e^-5	0.964	SYNONYMOUS_CODING mgl
3L	4149243	3L_4149243_SNP [dm3] 3L_4149243_SNP [dm6]	A	T	9.268e^-5	0.964	INTRON CG1299	TF binding site BDTNP1_TFBS_sna
3L	4149582	3L_4149582_SNP [dm3] 3L_4149582_SNP [dm6]	C	A	9.268e^-5	0.964	INTRON CG1299	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	18817375	2R_18817375_SNP [dm3] 2R_22929852_SNP [dm6]	T	C	9.305e^-5	0.964	SYNONYMOUS_CODING CG42678 UTR_5_PRIME CG42678 UTR_3_PRIME CG42678 DOWNSTREAM CG42678
3L	6132764	3L_6132764_SNP [dm3] 3L_6139664_SNP [dm6]	C	A	9.368e^-5	0.964	INTRON Cpr65Av
3L	8580309	3L_8580309_SNP [dm3] 3L_8587209_SNP [dm6]	C	A	9.394e^-5	0.964	INTRON CG43078	TF binding site mE1_TFBS_chinmo
3L	8580336	3L_8580336_SNP [dm3] 3L_8587236_SNP [dm6]	A	C	9.394e^-5	0.964	INTRON CG43078	TF binding site mE1_TFBS_chinmo
3L	8580347	3L_8580347_SNP [dm3] 3L_8587247_SNP [dm6]	G	T	9.394e^-5	0.964	INTRON CG43078	TF binding site mE1_TFBS_chinmo
2R	18018302	2R_18018302_SNP [dm3] 2R_22130797_SNP [dm6]	A	T	9.524e^-5	0.964	SYNONYMOUS_CODING CG34205 DOWNSTREAM NtR	TF binding site mE1_TFBS_chinmo
2R	20109038	2R_20109038_SNP [dm3] 2R_24221515_SNP [dm6]	C	T	9.726e^-5	0.964	INTRON CG30419
3R	21375546	3R_21375546_SNP [dm3] 3R_25549824_SNP [dm6]	C	A	9.734e^-5	0.964	INTRON msi
2L	6011865	2L_6011865_SNP [dm3] 2L_6011865_SNP [dm6]	G	A	9.806e^-5	0.964	SYNONYMOUS_CODING CG9098 UTR_5_PRIME CG9098 UPSTREAM CG9098	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21288214	3R_21288214_SNP [dm3] 3R_25462492_SNP [dm6]	G	C	9.876e^-5	0.964	INTRON Fur1
2L	13278691	2L_13278691_SNP [dm3] 2L_13278691_SNP [dm6]	C	A	9.965e^-5	0.964	NON_SYNONYMOUS_CODING CG44085 INTRON CG44085	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	12732349	3R_12732349_SNP [dm3] 3R_16906627_SNP [dm6]	A	C	9.998e^-5	0.964	INTRON iab-8	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	5358982	X_5358982_SNP [dm3] X_5464949_SNP [dm6]	T	C	1.011e^-4	0.964	UTR_5_PRIME SPR INTRON SPR
3L	4149360	3L_4149360_SNP [dm3] 3L_4149360_SNP [dm6]	C	A	1.012e^-4	0.964	INTRON CG1299	TF binding site BDTNP1_TFBS_sna
X	1568431	X_1568431_SNP [dm3] X_1674398_SNP [dm6]	T	C	1.017e^-4	0.964	UTR_3_PRIME CG32809 DOWNSTREAM hfw & 1 other
3L	13210614	3L_13210614_SNP [dm3] 3L_13217514_SNP [dm6]	T	A	1.029e^-4	0.964	DOWNSTREAM CR45098 EXON CR43914
3R	25540087	3R_25540087_SNP [dm3] 3R_29714365_SNP [dm6]	C	T	1.032e^-4	0.964	UPSTREAM Obp99d & 1 other DOWNSTREAM Dup99B INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	12143022	2L_12143022_SNP [dm3] 2L_12143022_SNP [dm6]	C	T	1.034e^-4	0.964	INTRON CG31760
X	5358983	X_5358983_SNP [dm3] X_5464950_SNP [dm6]	T	G	1.038e^-4	0.964	START_GAINED SPR UTR_5_PRIME SPR INTRON SPR
2R	19193085	2R_19193085_SNP [dm3] 2R_23305562_SNP [dm6]	C	T	1.051e^-4	0.964	INTERGENIC
2R	18025083	2R_18025083_SNP [dm3] 2R_22137578_SNP [dm6]	T	C	1.071e^-4	0.964	START_GAINED a UTR_5_PRIME a INTRON a	TF binding site mE1_TFBS_run mE1_TFBS_Trl
3L	13215138	3L_13215138_SNP [dm3] 3L_13222038_SNP [dm6]	G	A	1.089e^-4	0.964	INTERGENIC
3L	1473691	3L_1473691_SNP [dm3] 3L_1473691_SNP [dm6]	C	A	1.092e^-4	0.964	START_GAINED Ptp61F UTR_5_PRIME Ptp61F
X	15536601	X_15536601_SNP [dm3] X_15642568_SNP [dm6]	T	G	1.114e^-4	0.964	UPSTREAM CR44893 INTERGENIC
3L	3187472	3L_3187472_SNP [dm3] 3L_3187472_SNP [dm6]	A	T	1.127e^-4	0.964	UPSTREAM CG14957 DOWNSTREAM CG42494 & 2 others INTERGENIC
2L	7684145	2L_7684145_SNP [dm3] 2L_7684145_SNP [dm6]	A	T	1.146e^-4	0.964	UTR_3_PRIME Myo28B1 DOWNSTREAM CR44148 INTRON Myo28B1
3R	9970441	3R_9970441_SNP [dm3] 3R_14144719_SNP [dm6]	C	A	1.149e^-4	0.964	INTERGENIC
2L	3963762	2L_3963762_SNP [dm3] 2L_3963762_SNP [dm6]	C	T	1.160e^-4	0.964	INTRON fred
2L	9405412	2L_9405412_SNP [dm3] 2L_9405412_SNP [dm6]	A	T	1.172e^-4	0.964	INTRON Shawl
2L	9405471	2L_9405471_SNP [dm3] 2L_9405471_SNP [dm6]	C	T	1.172e^-4	0.964	INTRON Shawl
2L	18685678	2L_18685678_SNP [dm3] 2L_18685678_SNP [dm6]	C	T	1.176e^-4	0.964	SYNONYMOUS_CODING msl-1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	18962365	2R_18962365_SNP [dm3] 2R_23074842_SNP [dm6]	A	C	1.178e^-4	0.964	UTR_5_PRIME CG3085 UPSTREAM snoRNA:229 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15359638	X_15359638_SNP [dm3] X_15465605_SNP [dm6]	C	G	1.191e^-4	0.964	UTR_5_PRIME CG6299 UPSTREAM CG6299 DOWNSTREAM CG6294 & 1 other INTRON CG6299 & 1 other	TF binding site mE1_TFBS_chinmo
3L	8531789	3L_8531789_SNP [dm3] 3L_8538689_SNP [dm6]	A	C	1.194e^-4	0.964	DOWNSTREAM ergic53 INTERGENIC
X	18473289	X_18473289_SNP [dm3] X_18579256_SNP [dm6]	T	C	1.196e^-4	0.964	INTERGENIC
3L	8742317	3L_8742317_SNP [dm3] 3L_8749217_SNP [dm6]	A	G	1.198e^-4	0.964	UTR_3_PRIME CG13306	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	8742318	3L_8742318_SNP [dm3] 3L_8749218_SNP [dm6]	T	C	1.198e^-4	0.964	UTR_3_PRIME CG13306	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	7886097	X_7886097_SNP [dm3] X_7992064_SNP [dm6]	A	T	1.201e^-4	0.964	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	11735870	3L_11735870_SNP [dm3] 3L_11742770_SNP [dm6]	G	A	1.213e^-4	0.964	INTRON CG6024
3R	13870068	3R_13870068_SNP [dm3] 3R_18044346_SNP [dm6]	G	C	1.213e^-4	0.964	DOWNSTREAM htl INTERGENIC
2R	18021100	2R_18021100_SNP [dm3] 2R_22133595_SNP [dm6]	T	G	1.216e^-4	0.964	INTERGENIC
3R	13828457	3R_13828457_SNP [dm3] 3R_18002735_SNP [dm6]	A	G	1.217e^-4	0.964	INTRON cpo
3L	504922	3L_504922_SNP [dm3] 3L_504922_SNP [dm6]	A	C	1.234e^-4	0.964	INTRON klar
3L	16309217	3L_16309217_SNP [dm3] 3L_16316117_SNP [dm6]	T	G	1.235e^-4	0.964	DOWNSTREAM CG13062 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2877199	X_2877199_SNP [dm3] X_2983166_SNP [dm6]	T	C	1.236e^-4	0.964	INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	7684231	2L_7684231_SNP [dm3] 2L_7684231_SNP [dm6]	G	T	1.242e^-4	0.964	UTR_3_PRIME Myo28B1 DOWNSTREAM CR44148 INTRON Myo28B1
3R	21095047	3R_21095047_SNP [dm3] 3R_25269325_SNP [dm6]	C	A	1.242e^-4	0.964	UPSTREAM CG11889 & 1 other DOWNSTREAM CR43310 INTRON CR45214 EXON CR13656	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16108085	2L_16108085_SNP [dm3] 2L_16108085_SNP [dm6]	C	G	1.244e^-4	0.964	INTERGENIC
2R	18018269	2R_18018269_SNP [dm3] 2R_22130764_SNP [dm6]	G	A	1.246e^-4	0.964	SYNONYMOUS_CODING CG34205 DOWNSTREAM NtR	TF binding site mE1_TFBS_chinmo
3R	9663877	3R_9663877_SNP [dm3] 3R_13838155_SNP [dm6]	G	A	1.281e^-4	0.964	UPSTREAM Nsf2 DOWNSTREAM CG31495 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	13976928	2L_13976928_SNP [dm3] 2L_13976928_SNP [dm6]	C	A	1.328e^-4	0.964	UPSTREAM NimC1 & 1 other INTERGENIC
2R	8931534	2R_8931534_SNP [dm3] 2R_13044029_SNP [dm6]	C	G	1.329e^-4	0.964	DOWNSTREAM CG13323 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1
3L	6954718	3L_6954718_SNP [dm3] 3L_6961618_SNP [dm6]	G	A	1.333e^-4	0.964	INTRON sgl
2R	16932074	2R_16932074_INS [dm3] 2R_21044569_INS [dm6]	T	TTAAACGGCAGAA...	1.344e^-4	0.964	INTERGENIC
3R	21094697	3R_21094697_SNP [dm3] 3R_25268975_SNP [dm6]	A	C	1.348e^-4	0.964	SPLICE_SITE_REGION CR13656 DOWNSTREAM CR43310 INTRON CR45214 EXON CR13656
2L	13538797	2L_13538797_SNP [dm3] 2L_13538797_SNP [dm6]	A	G	1.349e^-4	0.964	INTRON B4
3L	11115405	3L_11115405_SNP [dm3] 3L_11122305_SNP [dm6]	G	A	1.350e^-4	0.964	SYNONYMOUS_CODING Ufd1-like DOWNSTREAM mRpL2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	1572729	X_1572729_SNP [dm3] X_1678696_SNP [dm6]	C	G	1.352e^-4	0.964	INTRON CG32809	TF binding site mE1_TFBS_sens
2R	20042996	2R_20042996_SNP [dm3] 2R_24155473_SNP [dm6]	A	G	1.363e^-4	0.964	INTRON Dat
2L	3973078	2L_3973078_SNP [dm3] 2L_3973078_SNP [dm6]	C	T	1.364e^-4	0.964	INTRON fred
X	5452736	X_5452736_SNP [dm3] X_5558703_SNP [dm6]	C	T	1.370e^-4	0.964	INTRON Vsx2
X	11797119	X_11797119_SNP [dm3] X_11903086_SNP [dm6]	C	A	1.383e^-4	0.964	SYNONYMOUS_CODING Upf1	TF binding site mE1_TFBS_chinmo
2L	2069331	2L_2069331_DEL [dm3] 2L_2069331_DEL [dm6]	ATCCACCCCACA...	A	1.389e^-4	0.964	INTRON dpr3	TF binding site mE1_TFBS_chinmo
X	12809459	X_12809459_SNP [dm3] X_12915426_SNP [dm6]	C	T	1.390e^-4	0.964	INTRON CR45626
2L	4339513	2L_4339513_SNP [dm3] 2L_4339513_SNP [dm6]	C	T	1.391e^-4	0.964	INTRON Atet	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	4339602	2L_4339602_SNP [dm3] 2L_4339602_SNP [dm6]	G	A	1.391e^-4	0.964	INTRON Atet	TF binding site mE1_TFBS_inv
2R	12358256	2R_12358256_SNP [dm3] 2R_16470751_SNP [dm6]	C	T	1.397e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	18845381	2R_18845381_SNP [dm3] 2R_22957858_SNP [dm6]	A	G	1.431e^-4	0.964	UPSTREAM CR44780 INTERGENIC
2R	3077858	2R_3077858_SNP [dm3] 2R_7190353_SNP [dm6]	T	A	1.431e^-4	0.964	INTRON pk	TF binding site mE1_TFBS_cad
2R	3080078	2R_3080078_SNP [dm3] 2R_7192573_SNP [dm6]	C	A	1.431e^-4	0.964	INTRON pk	TF binding site BDTNP1_TFBS_prd
2R	3080309	2R_3080309_SNP [dm3] 2R_7192804_SNP [dm6]	A	T	1.431e^-4	0.964	UTR_5_PRIME pk INTRON pk	TF binding site BDTNP1_TFBS_prd
3L	10629059	3L_10629059_SNP [dm3] 3L_10635959_SNP [dm6]	A	C	1.431e^-4	0.964	INTRON E_z_
3L	12043942	3L_12043942_SNP [dm3] 3L_12050842_SNP [dm6]	A	G	1.434e^-4	0.964	INTRON rols
X	1568355	X_1568355_SNP [dm3] X_1674322_SNP [dm6]	A	C	1.436e^-4	0.964	UTR_3_PRIME CG32809 DOWNSTREAM hfw & 1 other
X	15105741	X_15105741_SNP [dm3] X_15211708_SNP [dm6]	T	C	1.442e^-4	0.964	DOWNSTREAM CG5662 INTERGENIC
3L	10214307	3L_10214307_SNP [dm3] 3L_10221207_SNP [dm6]	C	A	1.447e^-4	0.964	INTRON scramb1	TF binding site mE1_TFBS_cad
2L	12226809	2L_12226809_SNP [dm3] 2L_12226809_SNP [dm6]	C	A	1.448e^-4	0.964	INTRON aret
3R	22563252	3R_22563252_SNP [dm3] 3R_26737530_SNP [dm6]	C	A	1.448e^-4	0.964	UPSTREAM CG14247 INTERGENIC
2R	19367815	2R_19367815_SNP [dm3] 2R_23480292_SNP [dm6]	G	T	1.453e^-4	0.964	INTRON CG43795
2R	12452490	2R_12452490_SNP [dm3] 2R_16564985_SNP [dm6]	T	A	1.465e^-4	0.964	SPLICE_SITE_REGION DAT UTR_5_PRIME DAT
2R	12452498	2R_12452498_SNP [dm3] 2R_16564993_SNP [dm6]	T	C	1.465e^-4	0.964	UTR_5_PRIME DAT
2L	1864553	2L_1864553_SNP [dm3] 2L_1864553_SNP [dm6]	T	A	1.469e^-4	0.964	INTRON CG31663
3L	13112889	3L_13112889_SNP [dm3] 3L_13119789_SNP [dm6]	G	C	1.477e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	4958092	2R_4958092_SNP [dm3] 2R_9070587_SNP [dm6]	A	G	1.478e^-4	0.964	INTRON ana	TF binding site BDTNP1_TFBS_Med
2L	13630878	2L_13630878_SNP [dm3] 2L_13630878_SNP [dm6]	G	C	1.488e^-4	0.964	SYNONYMOUS_CODING kuz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	5216126	X_5216126_SNP [dm3] X_5322093_SNP [dm6]	A	G	1.490e^-4	0.964	SYNONYMOUS_CODING Rnp4F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
X	13527370	X_13527370_SNP [dm3] X_13633337_SNP [dm6]	G	C	1.491e^-4	0.964	INTRON NFAT	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	13800375	2L_13800375_DEL [dm3] 2L_13800375_DEL [dm6]	CA	C	1.517e^-4	0.964	DOWNSTREAM Sec71 INTERGENIC
X	20461047	X_20461047_SNP [dm3] X_20590020_SNP [dm6]	C	T	1.523e^-4	0.964	DOWNSTREAM RunxA INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	10286096	3L_10286096_SNP [dm3] 3L_10292996_SNP [dm6]	G	A	1.524e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15686413	3L_15686413_SNP [dm3] 3L_15693313_SNP [dm6]	C	A	1.529e^-4	0.964	INTERGENIC	silencer mE1_HDAC_PRE
X	21324963	X_21324963_DEL [dm3] X_21453936_DEL [dm6]	TT	T	1.529e^-4	0.964	INTRON CG42343
3L	12018890	3L_12018890_SNP [dm3] 3L_12025790_SNP [dm6]	T	A	1.534e^-4	0.964	INTRON rols
3L	16457923	3L_16457923_SNP [dm3] 3L_16464823_SNP [dm6]	A	T	1.545e^-4	0.964	INTRON CG33158
2L	2969058	2L_2969058_SNP [dm3] 2L_2969058_SNP [dm6]	G	A	1.553e^-4	0.964	SYNONYMOUS_CODING Ts DOWNSTREAM Rbp9 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	4352461	2L_4352461_SNP [dm3] 2L_4352461_SNP [dm6]	C	A	1.559e^-4	0.964	UPSTREAM CG15429 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	8348154	X_8348154_SNP [dm3] X_8454121_SNP [dm6]	A	G	1.574e^-4	0.964	INTRON org-1
2R	7723045	2R_7723045_SNP [dm3] 2R_11835540_SNP [dm6]	A	C	1.577e^-4	0.964	INTRON Sobp	TF binding site mE1_TFBS_cad
2L	7684221	2L_7684221_SNP [dm3] 2L_7684221_SNP [dm6]	A	T	1.584e^-4	0.964	UTR_3_PRIME Myo28B1 DOWNSTREAM CR44148 INTRON Myo28B1
2R	18021268	2R_18021268_SNP [dm3] 2R_22133763_SNP [dm6]	G	A	1.589e^-4	0.964	INTERGENIC
3R	10807043	3R_10807043_SNP [dm3] 3R_14981321_SNP [dm6]	G	A	1.595e^-4	0.964	INTERGENIC
3R	10807084	3R_10807084_SNP [dm3] 3R_14981362_SNP [dm6]	T	G	1.595e^-4	0.964	INTERGENIC
3R	10807163	3R_10807163_SNP [dm3] 3R_14981441_SNP [dm6]	A	G	1.595e^-4	0.964	INTERGENIC
3L	8580317	3L_8580317_SNP [dm3] 3L_8587217_SNP [dm6]	T	A	1.625e^-4	0.964	INTRON CG43078	TF binding site mE1_TFBS_chinmo
3R	13042746	3R_13042746_SNP [dm3] 3R_17217024_SNP [dm6]	T	A	1.631e^-4	0.964	DOWNSTREAM CG31262 INTERGENIC
2L	2069395	2L_2069395_SNP [dm3] 2L_2069395_SNP [dm6]	T	C	1.633e^-4	0.964	INTRON dpr3
2L	2069397	2L_2069397_SNP [dm3] 2L_2069397_SNP [dm6]	C	T	1.633e^-4	0.964	INTRON dpr3
2R	18650560	2R_18650560_SNP [dm3] 2R_22763055_SNP [dm6]	G	A	1.644e^-4	0.964	UPSTREAM CG13527 INTRON CG42260
3L	2181433	3L_2181433_SNP [dm3] 3L_2181433_SNP [dm6]	G	A	1.646e^-4	0.964	INTERGENIC
2R	19363037	2R_19363037_INS [dm3] 2R_23475514_INS [dm6]	A	AA	1.657e^-4	0.964	DOWNSTREAM CG13557 INTRON CG43795
2R	16932052	2R_16932052_SNP [dm3] 2R_21044547_SNP [dm6]	C	A	1.666e^-4	0.964	INTERGENIC
3R	9033819	3R_9033819_SNP [dm3] 3R_13208097_SNP [dm6]	T	A	1.676e^-4	0.964	DOWNSTREAM CG8483 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	13711395	2L_13711395_SNP [dm3] 2L_13711395_SNP [dm6]	G	T	1.679e^-4	0.964	DOWNSTREAM CG7311 INTRON CG31814
3L	5480302	3L_5480302_SNP [dm3] 3L_5487202_SNP [dm6]	T	A	1.681e^-4	0.964	INTERGENIC
2R	10960743	2R_10960743_SNP [dm3] 2R_15073238_SNP [dm6]	A	G	1.686e^-4	0.964	INTERGENIC
2R	10960782	2R_10960782_SNP [dm3] 2R_15073277_SNP [dm6]	A	T	1.686e^-4	0.964	INTERGENIC
2R	10960784	2R_10960784_SNP [dm3] 2R_15073279_SNP [dm6]	T	C	1.686e^-4	0.964	INTERGENIC
3L	9791112	3L_9791112_SNP [dm3] 3L_9798012_SNP [dm6]	C	T	1.687e^-4	0.964	UPSTREAM Ilp1 & 1 other INTERGENIC
2L	15635071	2L_15635071_SNP [dm3] 2L_15635071_SNP [dm6]	A	G	1.702e^-4	0.964	DOWNSTREAM CG18480 INTERGENIC
2L	7122118	2L_7122118_SNP [dm3] 2L_7122118_SNP [dm6]	G	A	1.702e^-4	0.964	INTRON Pvf3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	18688780	X_18688780_INS [dm3] X_18794747_INS [dm6]	T	TATTCATTGTATGAT...	1.715e^-4	0.964	UTR_3_PRIME bnb INTRON Pk17E	TF binding site BDTNP1_TFBS_dl
X	5216068	X_5216068_SNP [dm3] X_5322035_SNP [dm6]	C	T	1.728e^-4	0.964	NON_SYNONYMOUS_CODING Rnp4F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	8535355	3L_8535355_SNP [dm3] 3L_8542255_SNP [dm6]	A	T	1.729e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	24646602	3R_24646602_SNP [dm3] 3R_28820880_SNP [dm6]	G	T	1.732e^-4	0.964	NON_SYNONYMOUS_CODING CG1647	TF binding site mE1_TFBS_ttk
3L	17949441	3L_17949441_SNP [dm3] 3L_17956341_SNP [dm6]	C	T	1.732e^-4	0.964	INTRON Eip75B	TF binding site mE1_TFBS_cad
2L	12486790	2L_12486790_SNP [dm3] 2L_12486790_SNP [dm6]	A	G	1.733e^-4	0.964	INTRON bun
3L	3241173	3L_3241173_DEL [dm3] 3L_3241173_DEL [dm6]	AAAGTCGGGCCTA...	A	1.741e^-4	0.964	INTERGENIC
3L	3799356	3L_3799356_SNP [dm3] 3L_3799356_SNP [dm6]	G	T	1.745e^-4	0.964	INTRON CG32264
3R	15373465	3R_15373465_SNP [dm3] 3R_19547743_SNP [dm6]	A	G	1.747e^-4	0.964	INTRON Dys
3L	13419923	3L_13419923_SNP [dm3] 3L_13426823_SNP [dm6]	T	C	1.748e^-4	0.964	UPSTREAM CG14105 INTERGENIC
3L	13549850	3L_13549850_SNP [dm3] 3L_13556750_SNP [dm6]	A	G	1.765e^-4	0.964	INTRON bru-3
3R	4877609	3R_4877609_SNP [dm3] 3R_9051887_SNP [dm6]	T	A	1.767e^-4	0.964	UTR_3_PRIME Mst85C UPSTREAM Kdm2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
X	17566754	X_17566754_SNP [dm3] X_17672721_SNP [dm6]	A	G	1.803e^-4	0.964	UTR_3_PRIME chas UPSTREAM CG12990
3L	13395282	3L_13395282_SNP [dm3] 3L_13402182_SNP [dm6]	G	C	1.810e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	13395285	3L_13395285_SNP [dm3] 3L_13402185_SNP [dm6]	A	T	1.810e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	9746494	3R_9746494_SNP [dm3] 3R_13920772_SNP [dm6]	T	A	1.814e^-4	0.964	INTERGENIC
3R	9746575	3R_9746575_INS [dm3] 3R_13920853_INS [dm6]	A	GACCCTTAAG	1.814e^-4	0.964	INTERGENIC
2L	2743809	2L_2743809_SNP [dm3] 2L_2743809_SNP [dm6]	C	T	1.820e^-4	0.964	SYNONYMOUS_CODING CG9961 UTR_3_PRIME CG9961 DOWNSTREAM Hrs	TF binding site mE1_TFBS_sens
3L	3906588	3L_3906588_SNP [dm3] 3L_3906588_SNP [dm6]	C	T	1.820e^-4	0.964	SYNONYMOUS_CODING ida	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7684328	2L_7684328_SNP [dm3] 2L_7684328_SNP [dm6]	T	C	1.823e^-4	0.964	UTR_3_PRIME Myo28B1 DOWNSTREAM CR44148 INTRON Myo28B1
3L	7272835	3L_7272835_SNP [dm3] 3L_7279735_SNP [dm6]	G	A	1.825e^-4	0.964	INTRON unc-13-4A
X	3241552	X_3241552_SNP [dm3] X_3347519_SNP [dm6]	T	C	1.829e^-4	0.964	INTRON CR44886	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19363325	2R_19363325_SNP [dm3] 2R_23475802_SNP [dm6]	C	T	1.831e^-4	0.964	UTR_3_PRIME CG13557 UPSTREAM CR43792 INTRON CG43795
2L	7912495	2L_7912495_SNP [dm3] 2L_7912495_SNP [dm6]	T	C	1.858e^-4	0.964	INTRON Snoo
X	11152349	X_11152349_SNP [dm3] X_11258316_SNP [dm6]	T	G	1.861e^-4	0.964	INTRON CG44422
2R	16982037	2R_16982037_SNP [dm3] 2R_21094532_SNP [dm6]	T	C	1.867e^-4	0.964	INTRON CG34396
2L	16117642	2L_16117642_SNP [dm3] 2L_16117642_SNP [dm6]	T	C	1.884e^-4	0.964	INTERGENIC
3L	2309845	3L_2309845_SNP [dm3] 3L_2309845_SNP [dm6]	G	T	1.884e^-4	0.964	INTERGENIC
3R	13664001	3R_13664001_SNP [dm3] 3R_17838279_SNP [dm6]	G	A	1.887e^-4	0.964	INTRON tinc	TF binding site mE1_TFBS_inv
3L	14356081	3L_14356081_SNP [dm3] 3L_14362981_SNP [dm6]	A	G	1.910e^-4	0.964	INTRON fz
2R	13858373	2R_13858373_SNP [dm3] 2R_17970868_SNP [dm6]	T	C	1.932e^-4	0.964	INTERGENIC
2L	698269	2L_698269_SNP [dm3] 2L_698269_SNP [dm6]	G	A	1.938e^-4	0.964	INTRON ds
2L	8124534	2L_8124534_SNP [dm3] 2L_8124534_SNP [dm6]	C	G	1.940e^-4	0.964	NON_SYNONYMOUS_CODING CG8673 UPSTREAM mon2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13211841	3L_13211841_SNP [dm3] 3L_13218741_SNP [dm6]	G	C	1.949e^-4	0.964	EXON CR45098	TF binding site mE1_TFBS_inv
3L	13212959	3L_13212959_SNP [dm3] 3L_13219859_SNP [dm6]	T	C	1.949e^-4	0.964	UPSTREAM CR45098 INTERGENIC
X	15105727	X_15105727_SNP [dm3] X_15211694_SNP [dm6]	C	A	1.952e^-4	0.964	DOWNSTREAM CG5662 INTERGENIC
2L	7684184	2L_7684184_SNP [dm3] 2L_7684184_SNP [dm6]	C	T	1.953e^-4	0.964	UTR_3_PRIME Myo28B1 DOWNSTREAM CR44148 INTRON Myo28B1
2L	7684185	2L_7684185_SNP [dm3] 2L_7684185_SNP [dm6]	C	T	1.953e^-4	0.964	UTR_3_PRIME Myo28B1 DOWNSTREAM CR44148 INTRON Myo28B1
2L	7684210	2L_7684210_SNP [dm3] 2L_7684210_SNP [dm6]	T	C	1.953e^-4	0.964	UTR_3_PRIME Myo28B1 DOWNSTREAM CR44148 INTRON Myo28B1
3L	10285990	3L_10285990_INS [dm3] 3L_10292890_INS [dm6]	T	TTT	1.954e^-4	0.964	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	10286001	3L_10286001_DEL [dm3] 3L_10292901_DEL [dm6]	TGTC	T	1.954e^-4	0.964	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	10234282	3L_10234282_SNP [dm3] 3L_10241182_SNP [dm6]	C	A	1.954e^-4	0.964	DOWNSTREAM CR45403 INTERGENIC
2L	21729624	2L_21729624_SNP [dm3] 2L_21729624_SNP [dm6]	A	G	1.954e^-4	0.964	DOWNSTREAM CG31619 INTERGENIC	transposable element FlyBase
3R	5237137	3R_5237137_SNP [dm3] 3R_9411415_SNP [dm6]	T	A	1.955e^-4	0.964	SYNONYMOUS_CODING Task7
2L	12486725	2L_12486725_SNP [dm3] 2L_12486725_SNP [dm6]	T	A	1.962e^-4	0.964	INTRON bun
3L	13395486	3L_13395486_SNP [dm3] 3L_13402386_SNP [dm6]	A	T	1.963e^-4	0.964	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	5251576	2R_5251576_SNP [dm3] 2R_9364071_SNP [dm6]	T	A	1.964e^-4	0.964	INTRON CG13954
3L	2187058	3L_2187058_SNP [dm3] 3L_2187058_SNP [dm6]	A	C	1.969e^-4	0.964	SYNONYMOUS_CODING CG13810	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13050248	2R_13050248_SNP [dm3] 2R_17162743_SNP [dm6]	C	T	1.975e^-4	0.964	INTERGENIC
X	20460966	X_20460966_SNP [dm3] X_20589939_SNP [dm6]	A	G	1.977e^-4	0.964	DOWNSTREAM RunxA INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	13350619	3L_13350619_SNP [dm3] 3L_13357519_SNP [dm6]	G	T	1.992e^-4	0.964	DOWNSTREAM Nplp2 INTERGENIC
X	11559313	X_11559313_INS [dm3] X_11665280_INS [dm6]	A	AATACTGTTAATA...	1.993e^-4	0.964	INTRON Ptp10D
2R	20443418	2R_20443418_SNP [dm3] 2R_24555895_SNP [dm6]	T	A	2.001e^-4	0.964	INTRON CG4622 & 1 other
2R	20443425	2R_20443425_SNP [dm3] 2R_24555902_SNP [dm6]	A	C	2.001e^-4	0.964	INTRON CG4622 & 1 other
X	3910610	X_3910610_SNP [dm3] X_4016577_SNP [dm6]	T	C	2.006e^-4	0.964	INTERGENIC
3L	13395559	3L_13395559_INS [dm3] 3L_13402459_INS [dm6]	T	TGGTTTACTTCGCCAT...	2.032e^-4	0.964	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	10692184	2R_10692184_SNP [dm3] 2R_14804679_SNP [dm6]	G	T	2.042e^-4	0.964	INTRON kn	regulatory region REDfly_CRMs
2R	19360686	2R_19360686_SNP [dm3] 2R_23473163_SNP [dm6]	G	A	2.042e^-4	0.964	SYNONYMOUS_CODING Or59c INTRON CG43795
2R	18021171	2R_18021171_SNP [dm3] 2R_22133666_SNP [dm6]	G	A	2.046e^-4	0.964	INTERGENIC
2R	18021185	2R_18021185_SNP [dm3] 2R_22133680_SNP [dm6]	G	T	2.046e^-4	0.964	INTERGENIC
3L	18451827	3L_18451827_SNP [dm3] 3L_18458727_SNP [dm6]	C	T	2.047e^-4	0.964	DOWNSTREAM CG32196 INTERGENIC
2R	20091250	2R_20091250_SNP [dm3] 2R_24203727_SNP [dm6]	T	G	2.049e^-4	0.964	UTR_3_PRIME CG11406 INTRON CG11406
3R	22562985	3R_22562985_SNP [dm3] 3R_26737263_SNP [dm6]	C	A	2.057e^-4	0.964	UPSTREAM CG6403 & 1 other INTERGENIC
2R	3073840	2R_3073840_SNP [dm3] 2R_7186335_SNP [dm6]	C	T	2.072e^-4	0.964	UPSTREAM pk INTRON pk	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	1865467	3L_1865467_SNP [dm3] 3L_1865467_SNP [dm6]	T	C	2.081e^-4	0.964	START_GAINED CG12025 UTR_5_PRIME CG12025 UPSTREAM HBS1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10944424	3L_10944424_SNP [dm3] 3L_10951324_SNP [dm6]	G	A	2.087e^-4	0.964	INTERGENIC
2R	19362915	2R_19362915_SNP [dm3] 2R_23475392_SNP [dm6]	C	A	2.093e^-4	0.964	DOWNSTREAM CG13557 INTRON CG43795
2R	18962333	2R_18962333_SNP [dm3] 2R_23074810_SNP [dm6]	C	A	2.133e^-4	0.964	UPSTREAM CG3085 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17632688	2L_17632688_SNP [dm3] 2L_17632688_SNP [dm6]	C	T	2.135e^-4	0.964	INTERGENIC
2R	12373304	2R_12373304_SNP [dm3] 2R_16485799_SNP [dm6]	T	C	2.136e^-4	0.964	UPSTREAM CG15712 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	12373335	2R_12373335_SNP [dm3] 2R_16485830_SNP [dm6]	T	G	2.136e^-4	0.964	UPSTREAM CG15712 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	6213452	3L_6213452_SNP [dm3] 3L_6220352_SNP [dm6]	A	G	2.140e^-4	0.964	UPSTREAM pncr008:3L INTERGENIC
3L	2309710	3L_2309710_INS [dm3] 3L_2309710_INS [dm6]	T	TGT	2.153e^-4	0.964	INTERGENIC
3L	2309746	3L_2309746_SNP [dm3] 3L_2309746_SNP [dm6]	A	T	2.153e^-4	0.964	INTERGENIC
3L	9791379	3L_9791379_SNP [dm3] 3L_9798279_SNP [dm6]	G	T	2.156e^-4	0.964	UPSTREAM Ilp1 & 2 others INTERGENIC
X	4859156	X_4859156_DEL [dm3] X_4965123_DEL [dm6]	TATGATTTT	T	2.161e^-4	0.964	INTRON CR44833
3L	1020895	3L_1020895_SNP [dm3] 3L_1020895_SNP [dm6]	G	T	2.185e^-4	0.964	INTRON trio
X	4796425	X_4796425_SNP [dm3] X_4902392_SNP [dm6]	A	G	2.186e^-4	0.964	INTRON CG42594
2R	20111015	2R_20111015_SNP [dm3] 2R_24223492_SNP [dm6]	T	C	2.199e^-4	0.964	INTRON CG30419
2R	20114890	2R_20114890_SNP [dm3] 2R_24227367_SNP [dm6]	G	A	2.199e^-4	0.964	INTRON CG30419
3R	20366441	3R_20366441_SNP [dm3] 3R_24540719_SNP [dm6]	A	T	2.200e^-4	0.964	NON_SYNONYMOUS_CODING CG5789	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16570933	3R_16570933_SNP [dm3] 3R_20745211_SNP [dm6]	C	T	2.202e^-4	0.964	SPLICE_SITE_REGION CG31200 INTRON CG42322 & 1 other
3R	16570936	3R_16570936_SNP [dm3] 3R_20745214_SNP [dm6]	A	G	2.202e^-4	0.964	INTRON CG42322 & 1 other
3R	16570943	3R_16570943_SNP [dm3] 3R_20745221_SNP [dm6]	G	A	2.202e^-4	0.964	INTRON CG42322 & 1 other
3L	3639478	3L_3639478_SNP [dm3] 3L_3639478_SNP [dm6]	T	G	2.203e^-4	0.964	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	3602056	2R_3602056_INS [dm3] 2R_7714551_INS [dm6]	G	GAATAG	2.204e^-4	0.964	UPSTREAM CG1946 DOWNSTREAM CG1942 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	4055804	2L_4055804_SNP [dm3] 2L_4055804_SNP [dm6]	A	G	2.205e^-4	0.964	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3R	14934794	3R_14934794_SNP [dm3] 3R_19109072_SNP [dm6]	A	G	2.208e^-4	0.964	INTRON CG6040
3L	9505094	3L_9505094_SNP [dm3] 3L_9511994_SNP [dm6]	A	C	2.213e^-4	0.964	UPSTREAM RpS9 DOWNSTREAM CG33703 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_HSA
2L	13999301	2L_13999301_SNP [dm3] 2L_13999301_SNP [dm6]	A	G	2.229e^-4	0.964	INTRON rk
2L	3973076	2L_3973076_SNP [dm3] 2L_3973076_SNP [dm6]	T	G	2.234e^-4	0.964	INTRON fred
3L	12054843	3L_12054843_SNP [dm3] 3L_12061743_SNP [dm6]	A	G	2.269e^-4	0.964	SYNONYMOUS_CODING rols	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7684326	2L_7684326_SNP [dm3] 2L_7684326_SNP [dm6]	C	T	2.276e^-4	0.964	UTR_3_PRIME Myo28B1 DOWNSTREAM CR44148 INTRON Myo28B1
X	15105692	X_15105692_SNP [dm3] X_15211659_SNP [dm6]	T	G	2.281e^-4	0.964	DOWNSTREAM CG5662 INTERGENIC
2L	11577677	2L_11577677_SNP [dm3] 2L_11577677_SNP [dm6]	A	C	2.286e^-4	0.964	INTERGENIC
3R	13042860	3R_13042860_SNP [dm3] 3R_17217138_SNP [dm6]	G	T	2.303e^-4	0.964	UTR_3_PRIME CG31262
3R	13042864	3R_13042864_SNP [dm3] 3R_17217142_SNP [dm6]	C	A	2.303e^-4	0.964	UTR_3_PRIME CG31262
2R	2905774	2R_2905774_SNP [dm3] 2R_7018269_SNP [dm6]	G	A	2.324e^-4	0.964	UTR_3_PRIME Tsp42Ee UPSTREAM CG43646
3L	10998618	3L_10998618_SNP [dm3] 3L_11005518_SNP [dm6]	A	G	2.326e^-4	0.964	INTRON klu
2R	3073924	2R_3073924_SNP [dm3] 2R_7186419_SNP [dm6]	T	A	2.327e^-4	0.964	UPSTREAM pk INTRON pk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_zfh1
2L	13999189	2L_13999189_INS [dm3] 2L_13999189_INS [dm6]	T	TT	2.328e^-4	0.964	INTRON rk
3R	10871236	3R_10871236_SNP [dm3] 3R_15045514_SNP [dm6]	G	A	2.344e^-4	0.964	INTERGENIC
2R	12549997	2R_12549997_SNP [dm3] 2R_16662492_SNP [dm6]	T	G	2.359e^-4	0.964	INTRON Picot
2L	13328018	2L_13328018_SNP [dm3] 2L_13328018_SNP [dm6]	C	A	2.364e^-4	0.964	INTRON CG43778
X	10716361	X_10716361_INS [dm3] X_10822328_INS [dm6]	C	CACTCCC	2.365e^-4	0.964	UPSTREAM Imp INTRON Imp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3L	3639490	3L_3639490_SNP [dm3] 3L_3639490_SNP [dm6]	G	A	2.373e^-4	0.964	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9336055	3L_9336055_SNP [dm3] 3L_9342955_SNP [dm6]	C	T	2.373e^-4	0.964	SYNONYMOUS_CODING PGRP-LC	TF binding site mE1_TFBS_cad
X	13219481	X_13219481_INS [dm3] X_13325448_INS [dm6]	C	CAGCGTAC	2.379e^-4	0.964	INTRON IP3K2
X	13219494	X_13219494_INS [dm3] X_13325461_INS [dm6]	G	GG	2.379e^-4	0.964	INTRON IP3K2
3L	8061808	3L_8061808_SNP [dm3] 3L_8068708_SNP [dm6]	T	G	2.379e^-4	0.964	NON_SYNONYMOUS_CODING CG42590 UPSTREAM tRNA:CR32363 DOWNSTREAM CG42591 INTRON Ect4
2R	8620932	2R_8620932_SNP [dm3] 2R_12733427_SNP [dm6]	G	A	2.380e^-4	0.964	INTRON CG42663	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18874882	2R_18874882_SNP [dm3] 2R_22987359_SNP [dm6]	G	A	2.383e^-4	0.964	DOWNSTREAM CR42742 INTRON twi
2R	17713080	2R_17713080_SNP [dm3] 2R_21825575_SNP [dm6]	C	T	2.384e^-4	0.964	SYNONYMOUS_CODING CG13492	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	12549978	2R_12549978_SNP [dm3] 2R_16662473_SNP [dm6]	G	T	2.416e^-4	0.964	INTRON Picot
3L	9392501	3L_9392501_SNP [dm3] 3L_9399401_SNP [dm6]	C	A	2.429e^-4	0.964	UPSTREAM CG4080 DOWNSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	13212742	3L_13212742_SNP [dm3] 3L_13219642_SNP [dm6]	C	A	2.450e^-4	0.964	UPSTREAM CR45098 INTERGENIC	TF binding site mE1_TFBS_inv
X	14082289	X_14082289_SNP [dm3] X_14188256_SNP [dm6]	A	G	2.454e^-4	0.964	DOWNSTREAM CG12481 INTERGENIC
3L	17702067	3L_17702067_SNP [dm3] 3L_17708967_SNP [dm6]	A	G	2.457e^-4	0.964	INTRON Ccn
2L	13630308	2L_13630308_SNP [dm3] 2L_13630308_SNP [dm6]	C	G	2.459e^-4	0.964	INTRON kuz
3L	13592852	3L_13592852_SNP [dm3] 3L_13599752_SNP [dm6]	C	T	2.464e^-4	0.964	INTRON bru-3 EXON CR45120
2L	3264336	2L_3264336_SNP [dm3] 2L_3264336_SNP [dm6]	T	G	2.466e^-4	0.964	EXON CR45706	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	12452450	2R_12452450_SNP [dm3] 2R_16564945_SNP [dm6]	G	T	2.479e^-4	0.964	INTRON DAT
3R	25398367	3R_25398367_SNP [dm3] 3R_29572645_SNP [dm6]	T	C	2.488e^-4	0.964	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	25945846	3R_25945846_DEL [dm3] 3R_30120124_DEL [dm6]	AA	A	2.493e^-4	0.964	INTRON sima	TF binding site mE1_TFBS_chinmo
2R	19590890	2R_19590890_SNP [dm3] 2R_23703367_SNP [dm6]	T	C	2.505e^-4	0.964	SYNONYMOUS_CODING l_2_dtl UPSTREAM CG4091	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	10177664	2R_10177664_SNP [dm3] 2R_14290159_SNP [dm6]	C	T	2.506e^-4	0.964	INTRON Ih	TF binding site BDTNP1_TFBS_twi
3L	13395421	3L_13395421_SNP [dm3] 3L_13402321_SNP [dm6]	C	T	2.523e^-4	0.964	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	18922755	2R_18922755_SNP [dm3] 2R_23035232_SNP [dm6]	T	C	2.536e^-4	0.964	INTRON twi & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	12193156	2R_12193156_SNP [dm3] 2R_16305651_SNP [dm6]	A	T	2.541e^-4	0.964	EXON CR45232
3L	11773007	3L_11773007_SNP [dm3] 3L_11779907_SNP [dm6]	G	A	2.556e^-4	0.964	NON_SYNONYMOUS_CODING CG14131 INTRON Pi3K68D	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10210867	3L_10210867_SNP [dm3] 3L_10217767_SNP [dm6]	G	C	2.562e^-4	0.964	DOWNSTREAM CG8065 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16082452	X_16082452_SNP [dm3] X_16188419_SNP [dm6]	G	A	2.576e^-4	0.964	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	3185719	3L_3185719_SNP [dm3] 3L_3185719_SNP [dm6]	G	C	2.577e^-4	0.964	SYNONYMOUS_CODING CG42494 UPSTREAM CG32284 DOWNSTREAM Girdin
3L	3186698	3L_3186698_SNP [dm3] 3L_3186698_SNP [dm6]	G	T	2.577e^-4	0.964	SPLICE_SITE_DONOR CG32284 UPSTREAM CG14957 DOWNSTREAM CG42494 INTRON CG32284
3L	3186876	3L_3186876_SNP [dm3] 3L_3186876_SNP [dm6]	C	T	2.577e^-4	0.964	SYNONYMOUS_CODING CG32284 UPSTREAM CG14957 DOWNSTREAM CG42494
X	15105735	X_15105735_SNP [dm3] X_15211702_SNP [dm6]	C	T	2.583e^-4	0.964	DOWNSTREAM CG5662 INTERGENIC
X	15105736	X_15105736_SNP [dm3] X_15211703_SNP [dm6]	A	C	2.583e^-4	0.964	DOWNSTREAM CG5662 INTERGENIC
X	15105742	X_15105742_DEL [dm3] X_15211709_DEL [dm6]	AGTTTCTAAATGTGG...	A	2.583e^-4	0.964	DOWNSTREAM CG5662 INTERGENIC
X	15105762	X_15105762_DEL [dm3] X_15211729_DEL [dm6]	TTACTGGCGAGTC...	T	2.583e^-4	0.964	DOWNSTREAM CG5662 INTERGENIC
X	15105780	X_15105780_SNP [dm3] X_15211747_SNP [dm6]	A	T	2.583e^-4	0.964	DOWNSTREAM CG5662 INTERGENIC
X	15105795	X_15105795_SNP [dm3] X_15211762_SNP [dm6]	T	A	2.583e^-4	0.964	DOWNSTREAM CG5662 INTERGENIC
X	15105812	X_15105812_INS [dm3] X_15211779_INS [dm6]	T	TTTAAAGATATACT...	2.583e^-4	0.964	DOWNSTREAM CG5662 INTERGENIC
X	15105824	X_15105824_SNP [dm3] X_15211791_SNP [dm6]	C	T	2.583e^-4	0.964	DOWNSTREAM CG5662 INTERGENIC
X	15105720	X_15105720_SNP [dm3] X_15211687_SNP [dm6]	A	C	2.596e^-4	0.964	DOWNSTREAM CG5662 INTERGENIC
2L	19841514	2L_19841514_SNP [dm3] 2L_19841514_SNP [dm6]	A	G	2.604e^-4	0.964	INTRON sick
X	20464293	X_20464293_SNP [dm3] X_20593266_SNP [dm6]	T	A	2.610e^-4	0.964	INTRON RunxA
3R	24601218	3R_24601218_SNP [dm3] 3R_28775496_SNP [dm6]	T	A	2.627e^-4	0.964	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	2309821	3L_2309821_SNP [dm3] 3L_2309821_SNP [dm6]	A	G	2.634e^-4	0.964	INTERGENIC
2R	20344791	2R_20344791_SNP [dm3] 2R_24457268_SNP [dm6]	C	A	2.636e^-4	0.964	INTRON CG13579
X	16018840	X_16018840_SNP [dm3] X_16124807_SNP [dm6]	A	T	2.637e^-4	0.964	UPSTREAM disco-r INTRON disco-r
X	20460967	X_20460967_SNP [dm3] X_20589940_SNP [dm6]	C	G	2.648e^-4	0.964	DOWNSTREAM RunxA INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	1073192	3L_1073192_SNP [dm3] 3L_1073192_SNP [dm6]	G	A	2.658e^-4	0.964	INTRON bab1
3R	964868	3R_964868_SNP [dm3] 3R_5139146_SNP [dm6]	A	G	2.666e^-4	0.964	UPSTREAM CG12589 INTERGENIC
2L	16117337	2L_16117337_SNP [dm3] 2L_16117337_SNP [dm6]	T	A	2.684e^-4	0.964	INTERGENIC
3R	13565257	3R_13565257_SNP [dm3] 3R_17739535_SNP [dm6]	G	A	2.687e^-4	0.964	UPSTREAM TyrRII INTRON TyrRII
2R	3269477	2R_3269477_SNP [dm3] 2R_7381972_SNP [dm6]	T	C	2.701e^-4	0.964	UPSTREAM Dscam1 DOWNSTREAM cos INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	22562922	3R_22562922_INS [dm3] 3R_26737200_INS [dm6]	T	TAT	2.705e^-4	0.964	UPSTREAM CG6403 & 1 other INTERGENIC
3L	4614603	3L_4614603_SNP [dm3] 3L_4614603_SNP [dm6]	G	T	2.718e^-4	0.964	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA
3L	13104899	3L_13104899_SNP [dm3] 3L_13111799_SNP [dm6]	G	A	2.726e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9824812	2L_9824812_SNP [dm3] 2L_9824812_SNP [dm6]	T	A	2.735e^-4	0.964	INTRON nAChRalpha6
2R	19364924	2R_19364924_SNP [dm3] 2R_23477401_SNP [dm6]	C	G	2.739e^-4	0.964	UPSTREAM CG13557 DOWNSTREAM CR43792 INTRON CG43795 EXON CR43793
2R	19365789	2R_19365789_INS [dm3] 2R_23478266_INS [dm6]	GC	TAA	2.739e^-4	0.964	UPSTREAM CR43793 INTRON CG43795
2R	19564258	2R_19564258_SNP [dm3] 2R_23676735_SNP [dm6]	C	A	2.739e^-4	0.964	UPSTREAM Pde8 INTRON Pde8
2R	19568542	2R_19568542_SNP [dm3] 2R_23681019_SNP [dm6]	T	C	2.739e^-4	0.964	UPSTREAM St1 DOWNSTREAM Pde8 INTERGENIC
3L	13605871	3L_13605871_SNP [dm3] 3L_13612771_SNP [dm6]	T	A	2.739e^-4	0.964	INTRON bru-3
2L	9149567	2L_9149567_SNP [dm3] 2L_9149567_SNP [dm6]	C	T	2.742e^-4	0.964	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6004734	2L_6004734_SNP [dm3] 2L_6004734_SNP [dm6]	T	A	2.746e^-4	0.964	SYNONYMOUS_CODING Gal DOWNSTREAM Tsp26A EXON CR43866	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	21180779	X_21180779_SNP [dm3] X_21309752_SNP [dm6]	A	G	2.747e^-4	0.964	INTRON CG1801	transposable element FlyBase
2R	12373336	2R_12373336_SNP [dm3] 2R_16485831_SNP [dm6]	T	A	2.759e^-4	0.964	UPSTREAM CG15712 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	4796661	X_4796661_SNP [dm3] X_4902628_SNP [dm6]	G	C	2.760e^-4	0.964	INTRON CG42594
2R	17713098	2R_17713098_SNP [dm3] 2R_21825593_SNP [dm6]	A	G	2.777e^-4	0.964	SYNONYMOUS_CODING CG13492	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	18466971	X_18466971_SNP [dm3] X_18572938_SNP [dm6]	C	A	2.783e^-4	0.964	DOWNSTREAM Bx INTERGENIC
2R	19550412	2R_19550412_SNP [dm3] 2R_23662889_SNP [dm6]	G	A	2.791e^-4	0.964	INTRON Pde8	TF binding site BDTNP1_TFBS_dl
3L	7188620	3L_7188620_SNP [dm3] 3L_7195520_SNP [dm6]	G	A	2.798e^-4	0.964	INTERGENIC
2R	11286778	2R_11286778_SNP [dm3] 2R_15399273_SNP [dm6]	A	T	2.801e^-4	0.964	INTERGENIC
3L	9723063	3L_9723063_SNP [dm3] 3L_9729963_SNP [dm6]	G	T	2.808e^-4	0.964	UPSTREAM ATPsyn-b DOWNSTREAM Naa60 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	4659308	3L_4659308_SNP [dm3] 3L_4659308_SNP [dm6]	T	A	2.815e^-4	0.964	INTRON axo
2R	14872158	2R_14872158_SNP [dm3] 2R_18984653_SNP [dm6]	G	T	2.834e^-4	0.964	INTERGENIC
2L	15432080	2L_15432080_SNP [dm3] 2L_15432080_SNP [dm6]	T	A	2.850e^-4	0.964	INTERGENIC
2L	16800168	2L_16800168_SNP [dm3] 2L_16800168_SNP [dm6]	C	A	2.851e^-4	0.964	NON_SYNONYMOUS_CODING Ugt36Bc
2L	9502232	2L_9502232_SNP [dm3] 2L_9502232_SNP [dm6]	C	T	2.852e^-4	0.964	INTRON CG33298
3R	6656802	3R_6656802_SNP [dm3] 3R_10831080_SNP [dm6]	A	T	2.855e^-4	0.964	INTRON Cad86C	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	3971470	2L_3971470_SNP [dm3] 2L_3971470_SNP [dm6]	T	C	2.856e^-4	0.964	INTRON fred
3L	1867306	3L_1867306_SNP [dm3] 3L_1867306_SNP [dm6]	G	C	2.861e^-4	0.964	SYNONYMOUS_CODING CG12025	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12626830	X_12626830_SNP [dm3] X_12732797_SNP [dm6]	T	A	2.865e^-4	0.964	INTRON Smr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
3R	10529922	3R_10529922_SNP [dm3] 3R_14704200_SNP [dm6]	T	A	2.881e^-4	0.964	INTRON kibra
3L	10242624	3L_10242624_SNP [dm3] 3L_10249524_SNP [dm6]	G	C	2.881e^-4	0.964	UPSTREAM CR44540 INTERGENIC
3L	12863189	3L_12863189_SNP [dm3] 3L_12870089_SNP [dm6]	T	A	2.885e^-4	0.964	INTERGENIC
2L	14704819	2L_14704819_SNP [dm3] 2L_14704819_SNP [dm6]	T	A	2.898e^-4	0.964	INTERGENIC
X	10024469	X_10024469_SNP [dm3] X_10130436_SNP [dm6]	T	C	2.908e^-4	0.964	INTRON CR44894 & 1 other
3L	10023202	3L_10023202_DEL [dm3] 3L_10030102_DEL [dm6]	CAAAA	G	2.909e^-4	0.964	SPLICE_SITE_REGION CR45155 INTRON dpr6 EXON CR45155
2R	20115479	2R_20115479_SNP [dm3] 2R_24227956_SNP [dm6]	G	C	2.919e^-4	0.964	INTRON CG30419
2L	9157327	2L_9157327_SNP [dm3] 2L_9157327_SNP [dm6]	A	G	2.926e^-4	0.964	INTRON CG32982
3R	14812520	3R_14812520_SNP [dm3] 3R_18986798_SNP [dm6]	G	A	2.938e^-4	0.964	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14812550	3R_14812550_SNP [dm3] 3R_18986828_SNP [dm6]	C	T	2.938e^-4	0.964	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5262005	2L_5262005_SNP [dm3] 2L_5262005_SNP [dm6]	G	T	2.944e^-4	0.964	INTRON tkv	TF binding site BDTNP1_TFBS_twi
3L	4659265	3L_4659265_SNP [dm3] 3L_4659265_SNP [dm6]	C	A	2.947e^-4	0.964	INTRON axo
3L	17879683	3L_17879683_SNP [dm3] 3L_17886583_SNP [dm6]	T	A	2.961e^-4	0.964	NON_SYNONYMOUS_CODING CG16775	TF binding site mE1_TFBS_cad
2R	12549989	2R_12549989_SNP [dm3] 2R_16662484_SNP [dm6]	G	A	2.969e^-4	0.964	INTRON Picot
2L	13630488	2L_13630488_SNP [dm3] 2L_13630488_SNP [dm6]	T	C	2.969e^-4	0.964	INTRON kuz	TF binding site mE1_TFBS_cad
2R	19590716	2R_19590716_SNP [dm3] 2R_23703193_SNP [dm6]	G	T	2.975e^-4	0.964	SYNONYMOUS_CODING l_2_dtl UPSTREAM CG4091	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14898229	3R_14898229_SNP [dm3] 3R_19072507_SNP [dm6]	C	A	2.982e^-4	0.964	INTRON cdi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17726243	2R_17726243_SNP [dm3] 2R_21838738_SNP [dm6]	C	A	2.984e^-4	0.964	NON_SYNONYMOUS_CODING CG4372
3L	16167056	3L_16167056_SNP [dm3] 3L_16173956_SNP [dm6]	A	G	2.991e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12823439	3L_12823439_SNP [dm3] 3L_12830339_SNP [dm6]	T	C	2.996e^-4	0.964	INTRON CG10960	TF binding site mE1_TFBS_cnc
2R	17108116	2R_17108116_SNP [dm3] 2R_21220611_SNP [dm6]	C	T	3.004e^-4	0.964	SYNONYMOUS_CODING ASPP	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	12035659	X_12035659_SNP [dm3] X_12141626_SNP [dm6]	A	G	3.005e^-4	0.964	INTRON Ten-a
X	12035700	X_12035700_SNP [dm3] X_12141667_SNP [dm6]	C	T	3.005e^-4	0.964	INTRON Ten-a
3L	14328003	3L_14328003_SNP [dm3] 3L_14334903_SNP [dm6]	T	A	3.007e^-4	0.964	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	1568456	X_1568456_SNP [dm3] X_1674423_SNP [dm6]	A	C	3.010e^-4	0.964	UTR_3_PRIME CG32809 DOWNSTREAM hfw & 1 other
3L	9790945	3L_9790945_SNP [dm3] 3L_9797845_SNP [dm6]	C	A	3.010e^-4	0.964	UPSTREAM Ilp1 & 1 other INTERGENIC
2R	13046178	2R_13046178_SNP [dm3] 2R_17158673_SNP [dm6]	G	T	3.018e^-4	0.964	SYNONYMOUS_CODING CG30458 UPSTREAM CG17287	TF binding site mE1_TFBS_cad
2L	1901983	2L_1901983_SNP [dm3] 2L_1901983_SNP [dm6]	C	A	3.018e^-4	0.964	INTRON CG7337
3L	1520522	3L_1520522_SNP [dm3] 3L_1520522_SNP [dm6]	T	C	3.019e^-4	0.964	SYNONYMOUS_CODING Psa	TF binding site mE1_TFBS_cad
3L	1520582	3L_1520582_SNP [dm3] 3L_1520582_SNP [dm6]	G	C	3.019e^-4	0.964	SYNONYMOUS_CODING Psa	TF binding site mE1_TFBS_cad
2L	6265825	2L_6265825_SNP [dm3] 2L_6265825_SNP [dm6]	C	G	3.021e^-4	0.964	INTRON Ddr
X	13219507	X_13219507_SNP [dm3] X_13325474_SNP [dm6]	C	T	3.023e^-4	0.964	INTRON IP3K2
2L	13588812	2L_13588812_DEL [dm3] 2L_13588812_DEL [dm6]	GGCAGAGATGAGTTCA...	G	3.039e^-4	0.964	INTRON kuz
3R	5479874	3R_5479874_SNP [dm3] 3R_9654152_SNP [dm6]	G	C	3.040e^-4	0.964	UPSTREAM CG43441 INTRON CG9492
3R	5483271	3R_5483271_SNP [dm3] 3R_9657549_SNP [dm6]	G	A	3.040e^-4	0.964	SYNONYMOUS_CODING CG9492	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14571736	2R_14571736_DEL [dm3] 2R_18684231_DEL [dm6]	AA	A	3.050e^-4	0.964	UTR_3_PRIME CG44433 UPSTREAM CG44434 & 1 other
X	19360244	X_19360244_SNP [dm3] X_19466211_SNP [dm6]	C	T	3.060e^-4	0.964	SYNONYMOUS_CODING kek5	TF binding site mE1_TFBS_cad
2L	3971911	2L_3971911_SNP [dm3] 2L_3971911_SNP [dm6]	A	G	3.064e^-4	0.964	INTRON fred
3L	10239432	3L_10239432_SNP [dm3] 3L_10246332_SNP [dm6]	G	T	3.067e^-4	0.964	UPSTREAM CR44539 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1
X	11559316	X_11559316_SNP [dm3] X_11665283_SNP [dm6]	T	A	3.072e^-4	0.964	INTRON Ptp10D
X	11559318	X_11559318_SNP [dm3] X_11665285_SNP [dm6]	C	A	3.072e^-4	0.964	INTRON Ptp10D
X	11559321	X_11559321_INS [dm3] X_11665288_INS [dm6]	T	TTAAT	3.072e^-4	0.964	INTRON Ptp10D
2L	4351117	2L_4351117_SNP [dm3] 2L_4351117_SNP [dm6]	C	T	3.073e^-4	0.964	EXON CR44700	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	6867458	2L_6867458_SNP [dm3] 2L_6867458_SNP [dm6]	C	T	3.076e^-4	0.964	INTRON Nha1
3L	10285994	3L_10285994_SNP [dm3] 3L_10292894_SNP [dm6]	A	T	3.082e^-4	0.964	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	26940117	3R_26940117_SNP [dm3] 3R_31114395_SNP [dm6]	C	T	3.085e^-4	0.964	INTERGENIC	TF binding site mE1_TFBS_inv
3L	12094601	3L_12094601_SNP [dm3] 3L_12101501_SNP [dm6]	T	C	3.088e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	18451774	3L_18451774_SNP [dm3] 3L_18458674_SNP [dm6]	A	G	3.088e^-4	0.964	DOWNSTREAM CG32196 INTERGENIC
2R	12373326	2R_12373326_SNP [dm3] 2R_16485821_SNP [dm6]	T	A	3.091e^-4	0.964	UPSTREAM CG15712 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	13043059	3R_13043059_SNP [dm3] 3R_17217337_SNP [dm6]	G	A	3.092e^-4	0.964	INTRON CG31262
2L	3969214	2L_3969214_SNP [dm3] 2L_3969214_SNP [dm6]	G	T	3.125e^-4	0.964	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	18962263	2R_18962263_SNP [dm3] 2R_23074740_SNP [dm6]	A	C	3.138e^-4	0.964	UPSTREAM CG3085 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1869161	3L_1869161_SNP [dm3] 3L_1869161_SNP [dm6]	G	C	3.141e^-4	0.964	UTR_3_PRIME CG12025 UPSTREAM CG13924 DOWNSTREAM CG12025
3L	1849037	3L_1849037_SNP [dm3] 3L_1849037_SNP [dm6]	A	T	3.149e^-4	0.964	INTERGENIC
2R	10612887	2R_10612887_SNP [dm3] 2R_14725382_SNP [dm6]	G	A	3.150e^-4	0.964	INTERGENIC
3R	15409266	3R_15409266_DEL [dm3] 3R_19583544_DEL [dm6]	AA	A	3.151e^-4	0.964	INTRON Dys
3L	11665372	3L_11665372_DEL [dm3] 3L_11672272_DEL [dm6]	TATGTTGTG	A	3.153e^-4	0.964	INTRON CG32085
3L	1456122	3L_1456122_SNP [dm3] 3L_1456122_SNP [dm6]	G	A	3.153e^-4	0.964	INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	5101799	3R_5101799_SNP [dm3] 3R_9276077_SNP [dm6]	T	A	3.162e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	13527070	2R_13527070_SNP [dm3] 2R_17639565_SNP [dm6]	G	T	3.163e^-4	0.964	UPSTREAM CG10936 INTERGENIC
3L	3906381	3L_3906381_SNP [dm3] 3L_3906381_SNP [dm6]	G	A	3.171e^-4	0.964	SYNONYMOUS_CODING ida	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	11268507	3R_11268507_SNP [dm3] 3R_15442785_SNP [dm6]	T	C	3.174e^-4	0.964	UTR_3_PRIME AdamTS-A DOWNSTREAM Act88F
3R	11268519	3R_11268519_DEL [dm3] 3R_15442797_DEL [dm6]	AT	C	3.174e^-4	0.964	UTR_3_PRIME AdamTS-A DOWNSTREAM Act88F
3R	11268524	3R_11268524_DEL [dm3] 3R_15442802_DEL [dm6]	TG	T	3.174e^-4	0.964	UTR_3_PRIME AdamTS-A DOWNSTREAM Act88F
2R	11213938	2R_11213938_SNP [dm3] 2R_15326433_SNP [dm6]	G	A	3.178e^-4	0.964	UPSTREAM CG8157 DOWNSTREAM Arf51F & 1 other INTERGENIC
3L	15793677	3L_15793677_SNP [dm3] 3L_15800577_SNP [dm6]	G	T	3.195e^-4	0.964	INTERGENIC
2L	15736384	2L_15736384_SNP [dm3] 2L_15736384_SNP [dm6]	T	A	3.199e^-4	0.964	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3080391	2R_3080391_SNP [dm3] 2R_7192886_SNP [dm6]	C	A	3.213e^-4	0.964	UTR_5_PRIME pk INTRON pk	TF binding site mE1_TFBS_cad
X	4796515	X_4796515_DEL [dm3] X_4902482_DEL [dm6]	CGCCTTACGTTATC...	C	3.222e^-4	0.964	INTRON CG42594
3R	5101797	3R_5101797_SNP [dm3] 3R_9276075_SNP [dm6]	T	G	3.223e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	13198573	X_13198573_SNP [dm3] X_13304540_SNP [dm6]	C	A	3.224e^-4	0.964	UPSTREAM CR45018 & 1 other INTRON IP3K2 EXON CR45018	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2020744	2L_2020744_DEL [dm3] 2L_2020744_DEL [dm6]	ACTGAA	A	3.235e^-4	0.964	INTRON CG4238
2L	14705047	2L_14705047_SNP [dm3] 2L_14705047_SNP [dm6]	G	A	3.275e^-4	0.964	INTERGENIC
3R	13902618	3R_13902618_SNP [dm3] 3R_18076896_SNP [dm6]	A	G	3.275e^-4	0.964	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	17578086	2R_17578086_SNP [dm3] 2R_21690581_SNP [dm6]	T	A	3.278e^-4	0.964	UPSTREAM CG42496 & 1 other DOWNSTREAM CG10307 INTRON Tim10 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17578088	2R_17578088_SNP [dm3] 2R_21690583_SNP [dm6]	G	A	3.278e^-4	0.964	UPSTREAM CG42496 & 1 other DOWNSTREAM CG10307 INTRON Tim10 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	6752628	3L_6752628_DEL [dm3] 3L_6759528_DEL [dm6]	AAGTGGGTGAGCCA...	A	3.287e^-4	0.964	INTRON CG32392
3R	16378451	3R_16378451_SNP [dm3] 3R_20552729_SNP [dm6]	C	T	3.295e^-4	0.964	UTR_3_PRIME att-ORFA & 1 other UPSTREAM Stat92E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	13042925	3R_13042925_SNP [dm3] 3R_17217203_SNP [dm6]	C	T	3.298e^-4	0.964	UTR_3_PRIME CG31262
3R	13042939	3R_13042939_SNP [dm3] 3R_17217217_SNP [dm6]	A	G	3.298e^-4	0.964	UTR_3_PRIME CG31262
2L	5526281	2L_5526281_SNP [dm3] 2L_5526281_SNP [dm6]	C	T	3.308e^-4	0.964	SYNONYMOUS_CODING Cap-D3 UPSTREAM CG31648 DOWNSTREAM CG6907 EXON CR44793	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	5526307	2L_5526307_SNP [dm3] 2L_5526307_SNP [dm6]	A	T	3.308e^-4	0.964	NON_SYNONYMOUS_CODING Cap-D3 UPSTREAM CG31648 DOWNSTREAM CG6907 EXON CR44793	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	5088334	3L_5088334_INS [dm3] 3L_5088334_INS [dm6]	A	AT	3.314e^-4	0.964	INTERGENIC
2R	17322058	2R_17322058_SNP [dm3] 2R_21434553_SNP [dm6]	T	C	3.314e^-4	0.964	INTRON Sdc
3L	4632722	3L_4632722_SNP [dm3] 3L_4632722_SNP [dm6]	T	C	3.348e^-4	0.964	INTRON axo
3R	9746531	3R_9746531_SNP [dm3] 3R_13920809_SNP [dm6]	C	T	3.354e^-4	0.964	INTERGENIC
2L	1066451	2L_1066451_SNP [dm3] 2L_1066451_SNP [dm6]	T	C	3.366e^-4	0.964	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	15599023	3L_15599023_SNP [dm3] 3L_15605923_SNP [dm6]	T	A	3.409e^-4	0.964	INTRON RhoGAP71E
2L	4162754	2L_4162754_SNP [dm3] 2L_4162754_SNP [dm6]	C	A	3.410e^-4	0.964	INTERGENIC
3L	10023222	3L_10023222_SNP [dm3] 3L_10030122_SNP [dm6]	A	G	3.417e^-4	0.964	INTRON dpr6 EXON CR45155
2R	17323977	2R_17323977_SNP [dm3] 2R_21436472_SNP [dm6]	T	G	3.425e^-4	0.964	INTRON Sdc
2R	18021651	2R_18021651_INS [dm3] 2R_22134146_INS [dm6]	T	TAGA	3.427e^-4	0.964	INTERGENIC
3R	16067122	3R_16067122_SNP [dm3] 3R_20241400_SNP [dm6]	A	T	3.433e^-4	0.964	INTRON Nlg4
2L	6904843	2L_6904843_SNP [dm3] 2L_6904843_SNP [dm6]	A	G	3.440e^-4	0.964	NON_SYNONYMOUS_CODING Nlg2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14727502	2R_14727502_SNP [dm3] 2R_18839997_SNP [dm6]	G	T	3.449e^-4	0.964	SYNONYMOUS_CODING CG15099	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26874556	3R_26874556_SNP [dm3] 3R_31048834_SNP [dm6]	G	A	3.452e^-4	0.964	UPSTREAM Aph-4 INTERGENIC
2L	3969271	2L_3969271_SNP [dm3] 2L_3969271_SNP [dm6]	G	T	3.453e^-4	0.964	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	3969182	2L_3969182_SNP [dm3] 2L_3969182_SNP [dm6]	A	G	3.463e^-4	0.964	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	17305208	3R_17305208_SNP [dm3] 3R_21479486_SNP [dm6]	A	G	3.471e^-4	0.964	INTERGENIC
2L	3970283	2L_3970283_SNP [dm3] 2L_3970283_SNP [dm6]	A	T	3.471e^-4	0.964	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	14812542	3R_14812542_SNP [dm3] 3R_18986820_SNP [dm6]	T	A	3.495e^-4	0.964	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12343185	3L_12343185_SNP [dm3] 3L_12350085_SNP [dm6]	C	T	3.497e^-4	0.964	INTRON CrzR
3R	9038132	3R_9038132_SNP [dm3] 3R_13212410_SNP [dm6]	G	C	3.498e^-4	0.964	INTRON CG8483
3R	9041862	3R_9041862_SNP [dm3] 3R_13216140_SNP [dm6]	C	A	3.498e^-4	0.964	INTERGENIC
X	6872446	X_6872446_SNP [dm3] X_6978413_SNP [dm6]	C	A	3.509e^-4	0.964	UPSTREAM ogre INTRON ogre
2R	20053813	2R_20053813_SNP [dm3] 2R_24166290_SNP [dm6]	T	G	3.520e^-4	0.964	UPSTREAM CG3328 INTRON CG3328
2L	1869748	2L_1869748_SNP [dm3] 2L_1869748_SNP [dm6]	C	G	3.521e^-4	0.964	UPSTREAM CG7295 INTRON CG31663
3L	10944425	3L_10944425_SNP [dm3] 3L_10951325_SNP [dm6]	G	A	3.537e^-4	0.964	INTERGENIC
3L	10944432	3L_10944432_SNP [dm3] 3L_10951332_SNP [dm6]	A	G	3.537e^-4	0.964	INTERGENIC
3L	10944437	3L_10944437_SNP [dm3] 3L_10951337_SNP [dm6]	G	C	3.537e^-4	0.964	INTERGENIC
3L	10944440	3L_10944440_SNP [dm3] 3L_10951340_SNP [dm6]	A	C	3.537e^-4	0.964	INTERGENIC
2R	19582334	2R_19582334_SNP [dm3] 2R_23694811_SNP [dm6]	T	C	3.542e^-4	0.964	SYNONYMOUS_CODING angel INTRON CG30183	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3053756	3L_3053756_SNP [dm3] 3L_3053756_SNP [dm6]	C	T	3.544e^-4	0.964	INTRON CG1271	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12486674	2L_12486674_SNP [dm3] 2L_12486674_SNP [dm6]	G	A	3.545e^-4	0.964	INTRON bun
X	6872461	X_6872461_DEL [dm3] X_6978428_DEL [dm6]	AA	G	3.548e^-4	0.964	UPSTREAM ogre INTRON ogre
X	4796762	X_4796762_SNP [dm3] X_4902729_SNP [dm6]	G	A	3.549e^-4	0.964	INTRON CG42594
2L	3975374	2L_3975374_SNP [dm3] 2L_3975374_SNP [dm6]	G	A	3.559e^-4	0.964	INTRON fred
2R	19231245	2R_19231245_SNP [dm3] 2R_23343722_SNP [dm6]	A	T	3.566e^-4	0.964	INTRON CG3502
3L	7753182	3L_7753182_SNP [dm3] 3L_7760082_SNP [dm6]	T	G	3.567e^-4	0.964	UPSTREAM Hn DOWNSTREAM CG32373 INTERGENIC
2R	15669877	2R_15669877_SNP [dm3] 2R_19782372_SNP [dm6]	A	G	3.571e^-4	0.964	INTERGENIC
2R	15669942	2R_15669942_SNP [dm3] 2R_19782437_SNP [dm6]	C	T	3.571e^-4	0.964	INTERGENIC
3L	3185785	3L_3185785_SNP [dm3] 3L_3185785_SNP [dm6]	C	T	3.577e^-4	0.964	SYNONYMOUS_CODING CG42494 UPSTREAM CG32284 DOWNSTREAM Girdin
3R	10163587	3R_10163587_SNP [dm3] 3R_14337865_SNP [dm6]	C	A	3.585e^-4	0.964	INTRON NK7.1
X	18466982	X_18466982_SNP [dm3] X_18572949_SNP [dm6]	C	A	3.594e^-4	0.964	DOWNSTREAM Bx INTERGENIC
3R	8565644	3R_8565644_SNP [dm3] 3R_12739922_SNP [dm6]	T	C	3.602e^-4	0.964	SYNONYMOUS_CODING CG5724
3L	6954716	3L_6954716_INS [dm3] 3L_6961616_INS [dm6]	G	GGCT	3.618e^-4	0.964	INTRON sgl
3R	13762879	3R_13762879_SNP [dm3] 3R_17937157_SNP [dm6]	T	C	3.623e^-4	0.964	INTRON cpo
3R	13762880	3R_13762880_SNP [dm3] 3R_17937158_SNP [dm6]	G	C	3.623e^-4	0.964	INTRON cpo
2R	7723059	2R_7723059_SNP [dm3] 2R_11835554_SNP [dm6]	T	A	3.644e^-4	0.964	INTRON Sobp	TF binding site mE1_TFBS_cad
3L	4694347	3L_4694347_SNP [dm3] 3L_4694347_SNP [dm6]	G	T	3.647e^-4	0.964	SYNONYMOUS_CODING CG15876 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11891874	2R_11891874_SNP [dm3] 2R_16004369_SNP [dm6]	G	A	3.667e^-4	0.964	SYNONYMOUS_CODING CG8370	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25804536	3R_25804536_SNP [dm3] 3R_29978814_SNP [dm6]	G	T	3.677e^-4	0.964	INTERGENIC
2R	9466255	2R_9466255_SNP [dm3] 2R_13578750_SNP [dm6]	C	T	3.680e^-4	0.964	EXON CR44366	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12173736	2R_12173736_SNP [dm3] 2R_16286231_SNP [dm6]	A	G	3.695e^-4	0.964	SPLICE_SITE_REGION CG9068 SYNONYMOUS_CODING CG9068 EXON CR43728
2L	1601486	2L_1601486_SNP [dm3] 2L_1601486_SNP [dm6]	A	G	3.696e^-4	0.964	SYNONYMOUS_CODING haf INTRON CG31935	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13060586	3L_13060586_SNP [dm3] 3L_13067486_SNP [dm6]	A	C	3.713e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	12281534	3L_12281534_SNP [dm3] 3L_12288434_SNP [dm6]	G	A	3.718e^-4	0.964	DOWNSTREAM CR45658 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	12281536	3L_12281536_SNP [dm3] 3L_12288436_SNP [dm6]	A	G	3.718e^-4	0.964	DOWNSTREAM CR45658 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	17305212	3R_17305212_SNP [dm3] 3R_21479490_SNP [dm6]	G	T	3.721e^-4	0.964	INTERGENIC
3R	17305218	3R_17305218_SNP [dm3] 3R_21479496_SNP [dm6]	C	T	3.721e^-4	0.964	INTERGENIC
3R	7202726	3R_7202726_SNP [dm3] 3R_11377004_SNP [dm6]	C	G	3.732e^-4	0.964	SYNONYMOUS_CODING pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	12094566	3L_12094566_SNP [dm3] 3L_12101466_SNP [dm6]	C	T	3.747e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	2187109	3L_2187109_SNP [dm3] 3L_2187109_SNP [dm6]	T	C	3.751e^-4	0.964	SYNONYMOUS_CODING CG13810	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2187220	3L_2187220_SNP [dm3] 3L_2187220_SNP [dm6]	C	T	3.751e^-4	0.964	SYNONYMOUS_CODING CG13810	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9304424	3L_9304424_SNP [dm3] 3L_9311324_SNP [dm6]	C	T	3.756e^-4	0.964	INTERGENIC
3L	21564941	3L_21564941_SNP [dm3] 3L_21571841_SNP [dm6]	G	A	3.756e^-4	0.964	SYNONYMOUS_CODING Smc5
3L	5498283	3L_5498283_SNP [dm3] 3L_5505183_SNP [dm6]	A	T	3.759e^-4	0.964	INTRON CG34342
2L	9403399	2L_9403399_SNP [dm3] 2L_9403399_SNP [dm6]	G	T	3.762e^-4	0.964	INTRON Shawl
3R	9024642	3R_9024642_SNP [dm3] 3R_13198920_SNP [dm6]	T	C	3.762e^-4	0.964	INTERGENIC
2R	3016452	2R_3016452_SNP [dm3] 2R_7128947_SNP [dm6]	A	G	3.776e^-4	0.964	SPLICE_SITE_REGION Cyp9b1 INTRON Cyp9b1
2R	3016457	2R_3016457_SNP [dm3] 2R_7128952_SNP [dm6]	T	C	3.776e^-4	0.964	INTRON Cyp9b1
2R	12373315	2R_12373315_SNP [dm3] 2R_16485810_SNP [dm6]	A	G	3.785e^-4	0.964	UPSTREAM CG15712 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	7118608	2R_7118608_SNP [dm3] 2R_11231103_SNP [dm6]	C	T	3.787e^-4	0.964	INTRON metro	TF binding site mE1_TFBS_chinmo mE1_TFBS_Trl
2R	3460707	2R_3460707_SNP [dm3] 2R_7573202_SNP [dm6]	C	T	3.798e^-4	0.964	NON_SYNONYMOUS_CODING Vps13	TF binding site mE1_TFBS_inv
2R	12373393	2R_12373393_SNP [dm3] 2R_16485888_SNP [dm6]	C	G	3.800e^-4	0.964	UPSTREAM CG15712 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	16165582	3L_16165582_SNP [dm3] 3L_16172482_SNP [dm6]	A	C	3.801e^-4	0.964	INTERGENIC
3L	8062119	3L_8062119_SNP [dm3] 3L_8069019_SNP [dm6]	C	G	3.805e^-4	0.964	SYNONYMOUS_CODING CG42590 UPSTREAM tRNA:CR32363 DOWNSTREAM CG42591 INTRON Ect4
X	17320317	X_17320317_SNP [dm3] X_17426284_SNP [dm6]	C	A	3.807e^-4	0.964	SYNONYMOUS_CODING CG5613 INTRON CG12994
2R	19723110	2R_19723110_SNP [dm3] 2R_23835587_SNP [dm6]	T	A	3.807e^-4	0.964	NON_SYNONYMOUS_CODING CG5549	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7146982	3L_7146982_SNP [dm3] 3L_7153882_SNP [dm6]	A	C	3.816e^-4	0.964	INTRON corn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15105816	X_15105816_SNP [dm3] X_15211783_SNP [dm6]	T	C	3.817e^-4	0.964	DOWNSTREAM CG5662 INTERGENIC
2R	20026599	2R_20026599_SNP [dm3] 2R_24139076_SNP [dm6]	A	T	3.825e^-4	0.964	UPSTREAM Dat EXON CR44826	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	19576672	2R_19576672_SNP [dm3] 2R_23689149_SNP [dm6]	G	A	3.826e^-4	0.964	INTRON Pal2
3R	13043169	3R_13043169_SNP [dm3] 3R_17217447_SNP [dm6]	A	C	3.829e^-4	0.964	SYNONYMOUS_CODING CG31262 UTR_3_PRIME CG31262	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	22562952	3R_22562952_SNP [dm3] 3R_26737230_SNP [dm6]	G	C	3.834e^-4	0.964	UPSTREAM CG6403 & 1 other INTERGENIC
3L	19641063	3L_19641063_SNP [dm3] 3L_19647963_SNP [dm6]	T	A	3.840e^-4	0.964	SYNONYMOUS_CODING Oat	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24260395	3R_24260395_SNP [dm3] 3R_28434673_SNP [dm6]	T	C	3.854e^-4	0.964	INTRON beat-VI
2L	15328775	2L_15328775_SNP [dm3] 2L_15328775_SNP [dm6]	C	T	3.856e^-4	0.964	INTERGENIC
X	16018847	X_16018847_SNP [dm3] X_16124814_SNP [dm6]	A	G	3.866e^-4	0.964	UPSTREAM disco-r INTRON disco-r
2L	5579549	2L_5579549_DEL [dm3] 2L_5579549_DEL [dm6]	TTTAGAAAACT...	T	3.867e^-4	0.964	DOWNSTREAM CG14011 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	12147990	3L_12147990_SNP [dm3] 3L_12154890_SNP [dm6]	A	T	3.888e^-4	0.964	SYNONYMOUS_CODING Nrx-IV	TF binding site mE1_TFBS_sens
2R	19234070	2R_19234070_SNP [dm3] 2R_23346547_SNP [dm6]	G	A	3.907e^-4	0.964	UPSTREAM CG9863 INTRON CG3502	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19928478	2L_19928478_DEL [dm3] 2L_19928478_DEL [dm6]	GGGTGT	G	3.912e^-4	0.964	INTRON sick
2R	18829920	2R_18829920_SNP [dm3] 2R_22942397_SNP [dm6]	A	C	3.913e^-4	0.964	UTR_5_PRIME CG42694 UPSTREAM CG42694
2R	11675561	2R_11675561_SNP [dm3] 2R_15788056_SNP [dm6]	T	C	3.919e^-4	0.964	INTRON Zasp52
3R	7933982	3R_7933982_SNP [dm3] 3R_12108260_SNP [dm6]	G	T	3.922e^-4	0.964	INTRON dpr17
3L	1916510	3L_1916510_INS [dm3] 3L_1916510_INS [dm6]	A	AACTTTGAGTTCAA...	3.936e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10944419	3L_10944419_SNP [dm3] 3L_10951319_SNP [dm6]	T	C	3.946e^-4	0.964	INTERGENIC
3L	7150480	3L_7150480_SNP [dm3] 3L_7157380_SNP [dm6]	G	A	3.968e^-4	0.964	UPSTREAM corn & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	13042938	3R_13042938_SNP [dm3] 3R_17217216_SNP [dm6]	G	A	3.972e^-4	0.964	UTR_3_PRIME CG31262
3R	16236638	3R_16236638_SNP [dm3] 3R_20410916_SNP [dm6]	G	C	3.978e^-4	0.964	INTRON Gfrl
2R	51715	2R_51715_SNP [dm3] 2R_4164210_SNP [dm6]	T	G	3.980e^-4	0.964	INTERGENIC
3R	25168283	3R_25168283_SNP [dm3] 3R_29342561_SNP [dm6]	A	T	3.984e^-4	0.964	INTERGENIC	TF binding site mE1_TFBS_cad
X	16410486	X_16410486_SNP [dm3] X_16516453_SNP [dm6]	G	A	4.022e^-4	0.964	INTRON para
3L	8408217	3L_8408217_SNP [dm3] 3L_8415117_SNP [dm6]	A	C	4.023e^-4	0.964	DOWNSTREAM CG32354 INTRON Exo70
X	5536448	X_5536448_SNP [dm3] X_5642415_SNP [dm6]	G	C	4.032e^-4	0.964	INTRON CG42492
X	5380557	X_5380557_SNP [dm3] X_5486524_SNP [dm6]	T	C	4.044e^-4	0.964	INTRON SPR	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	17608172	2R_17608172_SNP [dm3] 2R_21720667_SNP [dm6]	C	G	4.049e^-4	0.964	UPSTREAM LBR & 1 other INTRON LBR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	8183654	3L_8183654_INS [dm3] 3L_8190554_INS [dm6]	T	TT	4.049e^-4	0.964	UTR_3_PRIME Atg18a UPSTREAM MED24 DOWNSTREAM CG7387	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8210716	2L_8210716_SNP [dm3] 2L_8210716_SNP [dm6]	T	A	4.052e^-4	0.964	UPSTREAM Ssb-c31a INTRON Su_var_205	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	16419184	3R_16419184_SNP [dm3] 3R_20593462_SNP [dm6]	C	T	4.052e^-4	0.964	UTR_5_PRIME bon UPSTREAM CG4159	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	13711287	2L_13711287_SNP [dm3] 2L_13711287_SNP [dm6]	T	A	4.055e^-4	0.964	DOWNSTREAM CG7311 INTRON CG31814
3L	15884330	3L_15884330_SNP [dm3] 3L_15891230_SNP [dm6]	T	C	4.058e^-4	0.964	INTRON pHCl
2L	7235872	2L_7235872_SNP [dm3] 2L_7235872_SNP [dm6]	C	T	4.059e^-4	0.964	INTRON Ndae1	TF binding site mE1_TFBS_cad
3R	24616421	3R_24616421_SNP [dm3] 3R_28790699_SNP [dm6]	T	G	4.060e^-4	0.964	NON_SYNONYMOUS_CODING intr DOWNSTREAM CG34295
3R	24616569	3R_24616569_SNP [dm3] 3R_28790847_SNP [dm6]	A	C	4.060e^-4	0.964	NON_SYNONYMOUS_CODING intr DOWNSTREAM CG34295
2L	3965191	2L_3965191_SNP [dm3] 2L_3965191_SNP [dm6]	A	C	4.072e^-4	0.964	INTRON fred
3R	11539917	3R_11539917_DEL [dm3] 3R_15714195_DEL [dm6]	GCGTTGAGTTG...	G	4.074e^-4	0.964	INTERGENIC
X	21940917	X_21940917_SNP [dm3] X_22539081_SNP [dm6]	C	A	4.085e^-4	0.964	INTRON CG17600 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	9353900	3L_9353900_SNP [dm3] 3L_9360800_SNP [dm6]	T	A	4.088e^-4	0.964	DOWNSTREAM CG32039 INTRON CG34455	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12570068	2R_12570068_SNP [dm3] 2R_16682563_SNP [dm6]	C	A	4.098e^-4	0.964	INTRON CG30463
2R	5477505	2R_5477505_SNP [dm3] 2R_9590000_SNP [dm6]	C	T	4.111e^-4	0.964	SYNONYMOUS_CODING CG1827 UPSTREAM Map60 INTRON clos	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11773153	3L_11773153_SNP [dm3] 3L_11780053_SNP [dm6]	C	T	4.111e^-4	0.964	SYNONYMOUS_CODING CG14131 INTRON Pi3K68D	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3986751	2L_3986751_SNP [dm3] 2L_3986751_SNP [dm6]	T	C	4.111e^-4	0.964	INTRON fred
X	19426255	X_19426255_SNP [dm3] X_19532222_SNP [dm6]	G	A	4.114e^-4	0.964	UTR_3_PRIME CG32532 UPSTREAM CG12231
X	19426277	X_19426277_SNP [dm3] X_19532244_SNP [dm6]	A	G	4.114e^-4	0.964	UTR_3_PRIME CG32532 UPSTREAM CG12231
3R	9039212	3R_9039212_SNP [dm3] 3R_13213490_SNP [dm6]	C	A	4.116e^-4	0.964	INTRON CG8483
2R	15313357	2R_15313357_SNP [dm3] 2R_19425852_SNP [dm6]	G	T	4.132e^-4	0.964	UPSTREAM hts INTRON CalpA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_zfh1
2L	6867360	2L_6867360_SNP [dm3] 2L_6867360_SNP [dm6]	T	C	4.138e^-4	0.964	INTRON Nha1
2R	8809240	2R_8809240_SNP [dm3] 2R_12921735_SNP [dm6]	A	G	4.145e^-4	0.964	SYNONYMOUS_CODING NAT1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	13282835	2L_13282835_SNP [dm3] 2L_13282835_SNP [dm6]	A	G	4.146e^-4	0.964	INTRON CG44085
2R	3071471	2R_3071471_SNP [dm3] 2R_7183966_SNP [dm6]	C	A	4.160e^-4	0.964	SYNONYMOUS_CODING CG30384 DOWNSTREAM CG30385 INTRON pk	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11665368	3L_11665368_SNP [dm3] 3L_11672268_SNP [dm6]	A	T	4.176e^-4	0.964	INTRON CG32085
3L	11772135	3L_11772135_SNP [dm3] 3L_11779035_SNP [dm6]	G	A	4.177e^-4	0.964	SYNONYMOUS_CODING CG14131 INTRON Pi3K68D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	20466804	2R_20466804_SNP [dm3] 2R_24579281_SNP [dm6]	G	T	4.180e^-4	0.964	SYNONYMOUS_CODING CG4681	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19365361	2R_19365361_SNP [dm3] 2R_23477838_SNP [dm6]	C	T	4.182e^-4	0.964	UPSTREAM CR43793 DOWNSTREAM CR43792 INTRON CG43795
3R	14898225	3R_14898225_SNP [dm3] 3R_19072503_SNP [dm6]	G	A	4.186e^-4	0.964	INTRON cdi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6005101	2L_6005101_SNP [dm3] 2L_6005101_SNP [dm6]	G	A	4.193e^-4	0.964	SYNONYMOUS_CODING Gal EXON CR43866	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2186920	2L_2186920_SNP [dm3] 2L_2186920_SNP [dm6]	C	T	4.196e^-4	0.964	UPSTREAM tRNA:CR31946 DOWNSTREAM CR44066 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	12949883	X_12949883_SNP [dm3] X_13055850_SNP [dm6]	G	C	4.200e^-4	0.964	UPSTREAM CG12715 INTRON rad
X	12949891	X_12949891_SNP [dm3] X_13055858_SNP [dm6]	C	T	4.200e^-4	0.964	UPSTREAM CG12715 INTRON rad
X	18473308	X_18473308_SNP [dm3] X_18579275_SNP [dm6]	A	C	4.212e^-4	0.964	INTERGENIC
X	18688760	X_18688760_SNP [dm3] X_18794727_SNP [dm6]	T	C	4.212e^-4	0.964	UTR_3_PRIME bnb INTRON Pk17E	TF binding site BDTNP1_TFBS_dl
2R	18021535	2R_18021535_SNP [dm3] 2R_22134030_SNP [dm6]	C	T	4.214e^-4	0.964	INTERGENIC
3L	9615198	3L_9615198_SNP [dm3] 3L_9622098_SNP [dm6]	A	G	4.217e^-4	0.964	SYNONYMOUS_CODING LanB2	TF binding site mE1_TFBS_cad
3L	4167727	3L_4167727_SNP [dm3] 3L_4167727_SNP [dm6]	G	C	4.239e^-4	0.964	UPSTREAM mas DOWNSTREAM CR44529 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	13534340	2L_13534340_SNP [dm3] 2L_13534340_SNP [dm6]	G	T	4.243e^-4	0.964	DOWNSTREAM CG33645 & 1 other INTRON B4	TF binding site BDTNP1_TFBS_dl
2L	3788095	2L_3788095_SNP [dm3] 2L_3788095_SNP [dm6]	A	T	4.247e^-4	0.964	INTRON CG3921
X	4859128	X_4859128_SNP [dm3] X_4965095_SNP [dm6]	A	T	4.247e^-4	0.964	INTRON CR44833
X	4859137	X_4859137_DEL [dm3] X_4965104_DEL [dm6]	TTTTTTTTTCGGC...	T	4.247e^-4	0.964	INTRON CR44833
X	8151420	X_8151420_SNP [dm3] X_8257387_SNP [dm6]	A	T	4.249e^-4	0.964	INTRON CG1632
3R	13043130	3R_13043130_SNP [dm3] 3R_17217408_SNP [dm6]	T	G	4.252e^-4	0.964	SYNONYMOUS_CODING CG31262 UTR_3_PRIME CG31262	TF binding site mE1_TFBS_HSA
3L	9563068	3L_9563068_INS [dm3] 3L_9569968_INS [dm6]	A	CTTAAATAGTTGCAAG...	4.253e^-4	0.964	INTRON CG42673
3R	13043200	3R_13043200_SNP [dm3] 3R_17217478_SNP [dm6]	C	A	4.254e^-4	0.964	NON_SYNONYMOUS_CODING CG31262 UTR_3_PRIME CG31262	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	6178040	X_6178040_SNP [dm3] X_6284007_SNP [dm6]	G	T	4.255e^-4	0.964	UPSTREAM CG11700 DOWNSTREAM Top3beta INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	25398553	3R_25398553_SNP [dm3] 3R_29572831_SNP [dm6]	C	T	4.270e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	12635711	X_12635711_SNP [dm3] X_12741678_SNP [dm6]	T	C	4.292e^-4	0.964	UPSTREAM CR45623 INTRON Smr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	1849006	3L_1849006_INS [dm3] 3L_1849006_INS [dm6]	T	TGAATTCAGTTTT...	4.294e^-4	0.964	INTERGENIC
2L	13285990	2L_13285990_SNP [dm3] 2L_13285990_SNP [dm6]	A	G	4.299e^-4	0.964	UPSTREAM Uvrag INTRON Drep-4 EXON CR44083	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6925284	3L_6925284_SNP [dm3] 3L_6932184_SNP [dm6]	G	A	4.302e^-4	0.964	UPSTREAM CG14820 & 1 other INTERGENIC
X	18913643	X_18913643_SNP [dm3] X_19019610_SNP [dm6]	G	C	4.306e^-4	0.964	INTRON CG43759
X	11559255	X_11559255_SNP [dm3] X_11665222_SNP [dm6]	A	G	4.312e^-4	0.964	INTRON Ptp10D
X	11559257	X_11559257_SNP [dm3] X_11665224_SNP [dm6]	A	T	4.312e^-4	0.964	INTRON Ptp10D
X	11559267	X_11559267_SNP [dm3] X_11665234_SNP [dm6]	G	A	4.312e^-4	0.964	INTRON Ptp10D
X	11559280	X_11559280_SNP [dm3] X_11665247_SNP [dm6]	T	A	4.312e^-4	0.964	INTRON Ptp10D
2L	3971431	2L_3971431_SNP [dm3] 2L_3971431_SNP [dm6]	A	C	4.316e^-4	0.964	INTRON fred
2L	3570081	2L_3570081_SNP [dm3] 2L_3570081_SNP [dm6]	T	G	4.317e^-4	0.964	INTERGENIC
2L	3570082	2L_3570082_SNP [dm3] 2L_3570082_SNP [dm6]	C	T	4.317e^-4	0.964	INTERGENIC
2L	3570087	2L_3570087_SNP [dm3] 2L_3570087_SNP [dm6]	G	C	4.317e^-4	0.964	INTERGENIC
2R	13010373	2R_13010373_SNP [dm3] 2R_17122868_SNP [dm6]	G	A	4.317e^-4	0.964	DOWNSTREAM Spn53F EXON CR45272
3L	9353892	3L_9353892_SNP [dm3] 3L_9360792_SNP [dm6]	G	C	4.319e^-4	0.964	DOWNSTREAM CG32039 INTRON CG34455	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13312903	3L_13312903_SNP [dm3] 3L_13319803_SNP [dm6]	C	T	4.323e^-4	0.964	INTERGENIC
2R	8549148	2R_8549148_INS [dm3] 2R_12661643_INS [dm6]	C	CAC	4.323e^-4	0.964	UTR_5_PRIME nemy INTRON nemy
3R	24649161	3R_24649161_SNP [dm3] 3R_28823439_SNP [dm6]	T	C	4.324e^-4	0.964	NON_SYNONYMOUS_CODING CG1647	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	1182815	2L_1182815_SNP [dm3] 2L_1182815_SNP [dm6]	A	G	4.331e^-4	0.964	SYNONYMOUS_CODING CG5126 DOWNSTREAM CG4896	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	18795552	3R_18795552_INS [dm3] 3R_22969830_INS [dm6]	C	CGAGCGC	4.350e^-4	0.964	INTERGENIC
2R	19542033	2R_19542033_SNP [dm3] 2R_23654510_SNP [dm6]	C	G	4.368e^-4	0.964	UTR_3_PRIME retn	TF binding site BDTNP1_TFBS_dl
2R	19360584	2R_19360584_SNP [dm3] 2R_23473061_SNP [dm6]	T	A	4.376e^-4	0.964	NON_SYNONYMOUS_CODING Or59c INTRON CG43795	TF binding site mE1_TFBS_chinmo
3L	4659284	3L_4659284_SNP [dm3] 3L_4659284_SNP [dm6]	A	T	4.378e^-4	0.964	INTRON axo
3L	4659285	3L_4659285_DEL [dm3] 3L_4659285_DEL [dm6]	ACT	A	4.378e^-4	0.964	INTRON axo
2R	3016448	2R_3016448_SNP [dm3] 2R_7128943_SNP [dm6]	A	G	4.392e^-4	0.964	SPLICE_SITE_REGION Cyp9b1 INTRON Cyp9b1
X	18466983	X_18466983_SNP [dm3] X_18572950_SNP [dm6]	C	T	4.392e^-4	0.964	DOWNSTREAM Bx INTERGENIC
2L	7684222	2L_7684222_SNP [dm3] 2L_7684222_SNP [dm6]	C	A	4.396e^-4	0.964	UTR_3_PRIME Myo28B1 DOWNSTREAM CR44148 INTRON Myo28B1
3L	12320676	3L_12320676_SNP [dm3] 3L_12327576_SNP [dm6]	C	G	4.396e^-4	0.964	INTERGENIC
2R	20452836	2R_20452836_SNP [dm3] 2R_24565313_SNP [dm6]	A	G	4.404e^-4	0.964	UPSTREAM uri DOWNSTREAM CG11414 INTERGENIC	TF binding site mE1_TFBS_cad
2R	20452871	2R_20452871_DEL [dm3] 2R_24565348_DEL [dm6]	ATTA	A	4.404e^-4	0.964	UPSTREAM uri DOWNSTREAM CG11414 INTERGENIC	TF binding site mE1_TFBS_cad
2R	20453042	2R_20453042_SNP [dm3] 2R_24565519_SNP [dm6]	G	T	4.404e^-4	0.964	UPSTREAM uri DOWNSTREAM CG11414 INTERGENIC
2R	20465071	2R_20465071_SNP [dm3] 2R_24577548_SNP [dm6]	T	A	4.404e^-4	0.964	UTR_3_PRIME Start1 DOWNSTREAM SIFa & 1 other
2R	20471373	2R_20471373_INS [dm3] 2R_24583850_INS [dm6]	C	CACC	4.404e^-4	0.964	INTRON pio
2R	20471384	2R_20471384_SNP [dm3] 2R_24583861_SNP [dm6]	C	A	4.404e^-4	0.964	INTRON pio
3L	11773008	3L_11773008_SNP [dm3] 3L_11779908_SNP [dm6]	T	C	4.411e^-4	0.964	SYNONYMOUS_CODING CG14131 INTRON Pi3K68D	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	15502658	3L_15502658_SNP [dm3] 3L_15509558_SNP [dm6]	G	A	4.418e^-4	0.964	NON_SYNONYMOUS_CODING gdl-ORF39 UTR_5_PRIME gdl UPSTREAM gdl DOWNSTREAM Z600	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	14306336	X_14306336_SNP [dm3] X_14412303_SNP [dm6]	T	A	4.419e^-4	0.964	INTRON dpr8
X	10803101	X_10803101_SNP [dm3] X_10909068_SNP [dm6]	C	T	4.427e^-4	0.964	SYNONYMOUS_CODING CG43901	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13226841	3L_13226841_SNP [dm3] 3L_13233741_SNP [dm6]	G	A	4.429e^-4	0.964	INTRON caps
3L	16271601	3L_16271601_SNP [dm3] 3L_16278501_SNP [dm6]	T	C	4.430e^-4	0.964	UTR_3_PRIME CG13050 DOWNSTREAM CG13065
2R	14571614	2R_14571614_SNP [dm3] 2R_18684109_SNP [dm6]	A	G	4.439e^-4	0.964	UTR_5_PRIME CG44435 & 1 other DOWNSTREAM CG44433
3L	1456141	3L_1456141_SNP [dm3] 3L_1456141_SNP [dm6]	T	A	4.450e^-4	0.964	INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	11151581	X_11151581_SNP [dm3] X_11257548_SNP [dm6]	T	C	4.463e^-4	0.964	INTRON CG44422
3R	20253772	3R_20253772_SNP [dm3] 3R_24428050_SNP [dm6]	T	C	4.466e^-4	0.964	INTRON nAChRalpha1	TF binding site mE1_TFBS_cad
2L	1880842	2L_1880842_DEL [dm3] 2L_1880842_DEL [dm6]	GTGATGG	G	4.467e^-4	0.964	UPSTREAM CG31663 INTRON CG31663
3R	11594546	3R_11594546_SNP [dm3] 3R_15768824_SNP [dm6]	T	A	4.471e^-4	0.964	INTERGENIC
2L	9404801	2L_9404801_SNP [dm3] 2L_9404801_SNP [dm6]	A	C	4.482e^-4	0.964	INTRON Shawl
3L	7549434	3L_7549434_SNP [dm3] 3L_7556334_SNP [dm6]	T	C	4.489e^-4	0.964	NON_SYNONYMOUS_CODING CG14837	TF binding site mE1_TFBS_sens
2L	1157694	2L_1157694_SNP [dm3] 2L_1157694_SNP [dm6]	G	C	4.490e^-4	0.964	UPSTREAM Tango14 DOWNSTREAM CR43767 INTRON capt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	1158024	2L_1158024_SNP [dm3] 2L_1158024_SNP [dm6]	A	G	4.490e^-4	0.964	UPSTREAM Tango14 DOWNSTREAM CR43767 INTRON capt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	1158096	2L_1158096_SNP [dm3] 2L_1158096_SNP [dm6]	G	A	4.490e^-4	0.964	UTR_5_PRIME capt UPSTREAM Tango14 DOWNSTREAM CR43767	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	16792158	3R_16792158_SNP [dm3] 3R_20966436_SNP [dm6]	C	T	4.491e^-4	0.964	SYNONYMOUS_CODING Atpalpha
2R	17140357	2R_17140357_SNP [dm3] 2R_21252852_SNP [dm6]	A	T	4.518e^-4	0.964	INTERGENIC
3L	8342579	3L_8342579_SNP [dm3] 3L_8349479_SNP [dm6]	A	C	4.522e^-4	0.964	SYNONYMOUS_CODING GAPcenA	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	9791417	3L_9791417_SNP [dm3] 3L_9798317_SNP [dm6]	T	A	4.524e^-4	0.964	UPSTREAM Ilp1 & 2 others INTERGENIC
X	20461186	X_20461186_SNP [dm3] X_20590159_SNP [dm6]	T	C	4.531e^-4	0.964	DOWNSTREAM RunxA INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	1850896	3L_1850896_SNP [dm3] 3L_1850896_SNP [dm6]	T	C	4.538e^-4	0.964	DOWNSTREAM CG13936 INTERGENIC
3R	14812506	3R_14812506_SNP [dm3] 3R_18986784_SNP [dm6]	A	C	4.541e^-4	0.964	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14812537	3R_14812537_SNP [dm3] 3R_18986815_SNP [dm6]	A	T	4.541e^-4	0.964	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14812539	3R_14812539_SNP [dm3] 3R_18986817_SNP [dm6]	T	A	4.541e^-4	0.964	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11559266	X_11559266_SNP [dm3] X_11665233_SNP [dm6]	T	G	4.543e^-4	0.964	INTRON Ptp10D
3L	8061816	3L_8061816_SNP [dm3] 3L_8068716_SNP [dm6]	A	T	4.543e^-4	0.964	SYNONYMOUS_CODING CG42590 UPSTREAM tRNA:CR32363 DOWNSTREAM CG42591 INTRON Ect4
2R	18923615	2R_18923615_SNP [dm3] 2R_23036092_SNP [dm6]	T	C	4.548e^-4	0.964	INTRON twi & 1 other	TF binding site mE1_TFBS_inv
3L	12010345	3L_12010345_SNP [dm3] 3L_12017245_SNP [dm6]	G	A	4.566e^-4	0.964	INTRON rols
3L	10211865	3L_10211865_SNP [dm3] 3L_10218765_SNP [dm6]	G	T	4.567e^-4	0.964	SYNONYMOUS_CODING CG32055
2R	16310798	2R_16310798_SNP [dm3] 2R_20423293_SNP [dm6]	A	G	4.572e^-4	0.964	INTERGENIC
X	2709551	X_2709551_INS [dm3] X_2815518_INS [dm6]	T	TTATTTTAATT...	4.591e^-4	0.964	INTRON kirre
2L	9150494	2L_9150494_SNP [dm3] 2L_9150494_SNP [dm6]	A	G	4.602e^-4	0.964	UPSTREAM CG32982 INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18913572	X_18913572_INS [dm3] X_19019539_INS [dm6]	A	AA	4.619e^-4	0.964	INTRON CG43759
3R	9739838	3R_9739838_SNP [dm3] 3R_13914116_SNP [dm6]	T	A	4.625e^-4	0.964	INTERGENIC
3R	27724776	3R_27724776_DEL [dm3] 3R_31899054_DEL [dm6]	CTTTTTC	C	4.637e^-4	0.964	INTRON heph
2L	9212088	2L_9212088_SNP [dm3] 2L_9212088_SNP [dm6]	G	A	4.662e^-4	0.964	INTRON tai	TF binding site BDTNP1_TFBS_dl
2L	9212091	2L_9212091_SNP [dm3] 2L_9212091_SNP [dm6]	G	A	4.662e^-4	0.964	INTRON tai	TF binding site BDTNP1_TFBS_dl
2L	19940524	2L_19940524_SNP [dm3] 2L_19940524_SNP [dm6]	T	A	4.692e^-4	0.964	INTRON sick
2L	19940547	2L_19940547_SNP [dm3] 2L_19940547_SNP [dm6]	T	G	4.692e^-4	0.964	INTRON sick
2L	14085878	2L_14085878_SNP [dm3] 2L_14085878_SNP [dm6]	G	A	4.694e^-4	0.964	INTRON nAChRalpha5
2L	20769706	2L_20769706_SNP [dm3] 2L_20769706_SNP [dm6]	A	C	4.701e^-4	0.964	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	15684408	3L_15684408_SNP [dm3] 3L_15691308_SNP [dm6]	T	A	4.704e^-4	0.964	INTRON CG34451	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	11058906	2R_11058906_SNP [dm3] 2R_15171401_SNP [dm6]	T	C	4.739e^-4	0.964	INTRON igl
2R	11058907	2R_11058907_SNP [dm3] 2R_15171402_SNP [dm6]	A	T	4.739e^-4	0.964	INTRON igl
2L	10148167	2L_10148167_SNP [dm3] 2L_10148167_SNP [dm6]	C	G	4.743e^-4	0.964	INTRON CG44153 & 1 other
2L	1753733	2L_1753733_SNP [dm3] 2L_1753733_SNP [dm6]	A	G	4.744e^-4	0.964	DOWNSTREAM CG17648 INTERGENIC
2R	20439799	2R_20439799_SNP [dm3] 2R_24552276_SNP [dm6]	T	C	4.748e^-4	0.964	INTRON CG4622 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	19013190	X_19013190_SNP [dm3] X_19119157_SNP [dm6]	G	A	4.759e^-4	0.964	INTERGENIC
2R	12508594	2R_12508594_DEL [dm3] 2R_16621089_DEL [dm6]	CCCGGTCTGCTGTCGCT...	C	4.765e^-4	0.964	INTRON CG5065	TF binding site mE1_TFBS_cad
X	19385968	X_19385968_SNP [dm3] X_19491935_SNP [dm6]	G	A	4.772e^-4	0.964	UTR_5_PRIME pcm UPSTREAM CG12203	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	19386158	X_19386158_SNP [dm3] X_19492125_SNP [dm6]	T	G	4.772e^-4	0.964	UPSTREAM CG12203 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
X	19386166	X_19386166_SNP [dm3] X_19492133_SNP [dm6]	C	A	4.772e^-4	0.964	UPSTREAM CG12203 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2L	13822518	2L_13822518_SNP [dm3] 2L_13822518_SNP [dm6]	T	C	4.773e^-4	0.964	INTRON b
2R	17718120	2R_17718120_SNP [dm3] 2R_21830615_SNP [dm6]	A	T	4.797e^-4	0.964	INTRON CG13492
2R	17718161	2R_17718161_SNP [dm3] 2R_21830656_SNP [dm6]	T	A	4.797e^-4	0.964	INTRON CG13492
3R	22562891	3R_22562891_SNP [dm3] 3R_26737169_SNP [dm6]	A	G	4.802e^-4	0.964	UPSTREAM CG6403 & 1 other INTERGENIC
3L	11228200	3L_11228200_SNP [dm3] 3L_11235100_SNP [dm6]	A	C	4.808e^-4	0.964	SYNONYMOUS_CODING Ir68a
2R	20138341	2R_20138341_SNP [dm3] 2R_24250818_SNP [dm6]	G	C	4.809e^-4	0.964	SYNONYMOUS_CODING Ir60a UPSTREAM snoRNA:Me18S-A1597 INTRON nord	TF binding site mE1_TFBS_chinmo
3L	1521969	3L_1521969_SNP [dm3] 3L_1521969_SNP [dm6]	C	T	4.809e^-4	0.964	SYNONYMOUS_CODING Psa	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	9289912	2L_9289912_SNP [dm3] 2L_9289912_SNP [dm6]	T	C	4.812e^-4	0.964	INTRON Ggamma30A
2L	2966422	2L_2966422_SNP [dm3] 2L_2966422_SNP [dm6]	G	A	4.820e^-4	0.964	UTR_3_PRIME Rbp9
3L	12175077	3L_12175077_SNP [dm3] 3L_12181977_SNP [dm6]	A	G	4.828e^-4	0.964	SYNONYMOUS_CODING CAH2
3R	14936503	3R_14936503_SNP [dm3] 3R_19110781_SNP [dm6]	G	T	4.829e^-4	0.964	INTRON CG6040
X	12035662	X_12035662_SNP [dm3] X_12141629_SNP [dm6]	C	A	4.833e^-4	0.964	INTRON Ten-a
2R	16088971	2R_16088971_SNP [dm3] 2R_20201466_SNP [dm6]	C	G	4.834e^-4	0.964	INTERGENIC
2R	20329233	2R_20329233_SNP [dm3] 2R_24441710_SNP [dm6]	T	G	4.844e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_HSA
X	19785902	X_19785902_SNP [dm3] X_19891869_SNP [dm6]	A	T	4.853e^-4	0.964	UPSTREAM Hers INTRON Hers
2L	3971501	2L_3971501_SNP [dm3] 2L_3971501_SNP [dm6]	C	T	4.865e^-4	0.964	INTRON fred
2L	13352625	2L_13352625_SNP [dm3] 2L_13352625_SNP [dm6]	G	A	4.886e^-4	0.964	SYNONYMOUS_CODING CG9395	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4659310	3L_4659310_SNP [dm3] 3L_4659310_SNP [dm6]	G	A	4.888e^-4	0.964	INTRON axo
3R	24434778	3R_24434778_SNP [dm3] 3R_28609056_SNP [dm6]	A	G	4.890e^-4	0.964	UTR_3_PRIME CG10011 DOWNSTREAM CG9986
X	18401895	X_18401895_SNP [dm3] X_18507862_SNP [dm6]	G	A	4.895e^-4	0.964	SYNONYMOUS_CODING Ggt-1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4050544	2L_4050544_SNP [dm3] 2L_4050544_SNP [dm6]	T	C	4.919e^-4	0.964	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	4203012	2L_4203012_SNP [dm3] 2L_4203012_SNP [dm6]	G	T	4.925e^-4	0.964	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_chinmo
X	21172279	X_21172279_SNP [dm3] X_21301252_SNP [dm6]	C	G	4.931e^-4	0.964	INTRON CG1718
3R	10334317	3R_10334317_SNP [dm3] 3R_14508595_SNP [dm6]	G	A	4.936e^-4	0.964	DOWNSTREAM HtrA2 EXON CR44177
2R	12550153	2R_12550153_SNP [dm3] 2R_16662648_SNP [dm6]	T	G	4.938e^-4	0.964	INTRON Picot
2L	13700761	2L_13700761_SNP [dm3] 2L_13700761_SNP [dm6]	C	T	4.946e^-4	0.964	INTRON CG31814
X	17102898	X_17102898_SNP [dm3] X_17208865_SNP [dm6]	T	C	4.948e^-4	0.964	SYNONYMOUS_CODING CG32563 DOWNSTREAM CG12995
2L	4056483	2L_4056483_SNP [dm3] 2L_4056483_SNP [dm6]	G	T	4.949e^-4	0.964	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	11643086	3L_11643086_SNP [dm3] 3L_11649986_SNP [dm6]	T	G	4.953e^-4	0.964	UTR_3_PRIME CG7339 DOWNSTREAM CG32085 & 1 other
2L	1869831	2L_1869831_SNP [dm3] 2L_1869831_SNP [dm6]	G	C	4.954e^-4	0.964	UTR_5_PRIME CG7295 INTRON CG31663
2L	14250962	2L_14250962_SNP [dm3] 2L_14250962_SNP [dm6]	A	C	4.955e^-4	0.964	INTERGENIC
2L	6609980	2L_6609980_SNP [dm3] 2L_6609980_SNP [dm6]	T	A	4.955e^-4	0.964	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	10490210	3L_10490210_SNP [dm3] 3L_10497110_SNP [dm6]	T	G	4.955e^-4	0.964	INTRON A2bp1
3L	10490968	3L_10490968_SNP [dm3] 3L_10497868_SNP [dm6]	C	T	4.955e^-4	0.964	INTRON A2bp1
3L	15592715	3L_15592715_SNP [dm3] 3L_15599615_SNP [dm6]	G	T	4.956e^-4	0.964	INTRON RhoGAP71E
2L	12537458	2L_12537458_SNP [dm3] 2L_12537458_SNP [dm6]	A	G	4.957e^-4	0.964	INTRON bun	TF binding site mE1_TFBS_chinmo
3L	10235345	3L_10235345_SNP [dm3] 3L_10242245_SNP [dm6]	T	G	4.975e^-4	0.964	DOWNSTREAM CR44541 INTERGENIC
3L	18442275	3L_18442275_SNP [dm3] 3L_18449175_SNP [dm6]	G	A	4.986e^-4	0.964	INTERGENIC
2L	20769716	2L_20769716_SNP [dm3] 2L_20769716_SNP [dm6]	C	A	4.998e^-4	0.964	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	1864483	2L_1864483_SNP [dm3] 2L_1864483_SNP [dm6]	C	G	4.999e^-4	0.964	INTRON CG31663
3L	10944416	3L_10944416_SNP [dm3] 3L_10951316_SNP [dm6]	A	C	5.021e^-4	0.964	INTERGENIC
3R	5994151	3R_5994151_SNP [dm3] 3R_10168429_SNP [dm6]	A	G	5.036e^-4	0.964	INTRON Best1	TF binding site mE1_TFBS_zfh1
X	16115698	X_16115698_DEL [dm3] X_16221665_DEL [dm6]	GTGG	G	5.053e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	6489303	X_6489303_SNP [dm3] X_6595270_SNP [dm6]	C	A	5.059e^-4	0.964	INTRON Pat1	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	14528183	3R_14528183_SNP [dm3] 3R_18702461_SNP [dm6]	A	G	5.061e^-4	0.964	INTERGENIC
3L	7189272	3L_7189272_SNP [dm3] 3L_7196172_SNP [dm6]	T	G	5.075e^-4	0.964	INTERGENIC
2R	19109550	2R_19109550_SNP [dm3] 2R_23222027_SNP [dm6]	C	T	5.075e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10300385	2L_10300385_SNP [dm3] 2L_10300385_SNP [dm6]	C	T	5.079e^-4	0.964	NON_SYNONYMOUS_CODING CG13138 UPSTREAM CYLD
3L	9791116	3L_9791116_SNP [dm3] 3L_9798016_SNP [dm6]	A	T	5.084e^-4	0.964	UPSTREAM Ilp1 & 1 other INTERGENIC
X	12635509	X_12635509_SNP [dm3] X_12741476_SNP [dm6]	A	C	5.084e^-4	0.964	UTR_5_PRIME Smr INTRON Smr	TF binding site BDTNP1_TFBS_dl
2L	2966500	2L_2966500_SNP [dm3] 2L_2966500_SNP [dm6]	A	G	5.086e^-4	0.964	UTR_3_PRIME Rbp9
X	14082287	X_14082287_SNP [dm3] X_14188254_SNP [dm6]	G	A	5.101e^-4	0.964	DOWNSTREAM CG12481 INTERGENIC
X	4859129	X_4859129_DEL [dm3] X_4965096_DEL [dm6]	AA	A	5.103e^-4	0.964	INTRON CR44833
X	11152348	X_11152348_SNP [dm3] X_11258315_SNP [dm6]	G	A	5.117e^-4	0.964	INTRON CG44422
3R	14898220	3R_14898220_DEL [dm3] 3R_19072498_DEL [dm6]	AA	A	5.136e^-4	0.964	INTRON cdi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1567368	X_1567368_DEL [dm3] X_1673335_DEL [dm6]	TATGTGT	T	5.139e^-4	0.964	UTR_3_PRIME hfw & 1 other DOWNSTREAM CG32809 & 1 other
2L	14454595	2L_14454595_SNP [dm3] 2L_14454595_SNP [dm6]	T	A	5.154e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	2568501	3R_2568501_SNP [dm3] 3R_6742779_SNP [dm6]	C	A	5.159e^-4	0.964	UPSTREAM pb DOWNSTREAM zen2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	2568681	3R_2568681_SNP [dm3] 3R_6742959_SNP [dm6]	T	A	5.159e^-4	0.964	UPSTREAM pb DOWNSTREAM zen2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	2568785	3R_2568785_SNP [dm3] 3R_6743063_SNP [dm6]	C	T	5.159e^-4	0.964	UPSTREAM pb DOWNSTREAM zen2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	13996324	2L_13996324_SNP [dm3] 2L_13996324_SNP [dm6]	G	A	5.163e^-4	0.964	INTRON rk
2L	7121907	2L_7121907_SNP [dm3] 2L_7121907_SNP [dm6]	T	A	5.163e^-4	0.964	INTRON Pvf3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12278230	3L_12278230_SNP [dm3] 3L_12285130_SNP [dm6]	A	T	5.174e^-4	0.964	INTERGENIC
3L	9343164	3L_9343164_SNP [dm3] 3L_9350064_SNP [dm6]	G	A	5.175e^-4	0.964	DOWNSTREAM UGP INTRON PGRP-LF
2R	13010501	2R_13010501_SNP [dm3] 2R_17122996_SNP [dm6]	C	T	5.177e^-4	0.964	UTR_3_PRIME Spn53F EXON CR45272
2L	14042256	2L_14042256_SNP [dm3] 2L_14042256_SNP [dm6]	G	T	5.178e^-4	0.964	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_dl
2L	7165512	2L_7165512_INS [dm3] 2L_7165512_INS [dm6]	A	AA	5.179e^-4	0.964	INTERGENIC
2R	11058889	2R_11058889_SNP [dm3] 2R_15171384_SNP [dm6]	T	C	5.186e^-4	0.964	INTRON igl
X	6791219	X_6791219_SNP [dm3] X_6897186_SNP [dm6]	A	C	5.189e^-4	0.964	INTERGENIC
2R	8548856	2R_8548856_SNP [dm3] 2R_12661351_SNP [dm6]	T	C	5.200e^-4	0.964	UTR_5_PRIME nemy INTRON nemy
2L	3613290	2L_3613290_SNP [dm3] 2L_3613290_SNP [dm6]	A	G	5.200e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	17014392	X_17014392_SNP [dm3] X_17120359_SNP [dm6]	G	C	5.202e^-4	0.964	INTRON CG5004
3R	23560802	3R_23560802_SNP [dm3] 3R_27735080_SNP [dm6]	A	G	5.211e^-4	0.964	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4521571	2L_4521571_SNP [dm3] 2L_4521571_SNP [dm6]	A	G	5.233e^-4	0.964	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18330193	2L_18330193_SNP [dm3] 2L_18330193_SNP [dm6]	A	T	5.235e^-4	0.964	INTRON Fas3
2R	19719732	2R_19719732_SNP [dm3] 2R_23832209_SNP [dm6]	G	A	5.235e^-4	0.964	INTRON CG5549
3R	8038928	3R_8038928_SNP [dm3] 3R_12213206_SNP [dm6]	C	T	5.238e^-4	0.964	DOWNSTREAM CG4848 INTERGENIC
2R	14452748	2R_14452748_SNP [dm3] 2R_18565243_SNP [dm6]	C	T	5.256e^-4	0.964	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	16761998	X_16761998_SNP [dm3] X_16867965_SNP [dm6]	T	A	5.262e^-4	0.964	INTRON CG13003
2L	335752	2L_335752_SNP [dm3] 2L_335752_SNP [dm6]	A	T	5.265e^-4	0.964	INTRON Plc21C
2L	2011518	2L_2011518_SNP [dm3] 2L_2011518_SNP [dm6]	T	A	5.268e^-4	0.964	UPSTREAM CG4238 & 2 others INTRON CG4238
3R	5028420	3R_5028420_SNP [dm3] 3R_9202698_SNP [dm6]	A	C	5.271e^-4	0.964	INTRON pum
X	9074936	X_9074936_DEL [dm3] X_9180903_DEL [dm6]	TT	T	5.294e^-4	0.964	UTR_3_PRIME mei-P26
3R	18449853	3R_18449853_SNP [dm3] 3R_22624131_SNP [dm6]	A	G	5.294e^-4	0.964	INTRON loco	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
X	16313534	X_16313534_SNP [dm3] X_16419501_SNP [dm6]	A	G	5.295e^-4	0.964	SYNONYMOUS_CODING AnxB11 INTRON AnxB11	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	4659296	3L_4659296_SNP [dm3] 3L_4659296_SNP [dm6]	T	C	5.295e^-4	0.964	INTRON axo
3L	4659302	3L_4659302_SNP [dm3] 3L_4659302_SNP [dm6]	A	G	5.295e^-4	0.964	INTRON axo
3L	4659304	3L_4659304_SNP [dm3] 3L_4659304_SNP [dm6]	A	T	5.295e^-4	0.964	INTRON axo
3L	11039895	3L_11039895_SNP [dm3] 3L_11046795_SNP [dm6]	C	T	5.305e^-4	0.964	UPSTREAM CG43693 INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	11559308	X_11559308_SNP [dm3] X_11665275_SNP [dm6]	T	C	5.306e^-4	0.964	INTRON Ptp10D
X	11559335	X_11559335_SNP [dm3] X_11665302_SNP [dm6]	C	T	5.306e^-4	0.964	INTRON Ptp10D
2R	20225772	2R_20225772_DEL [dm3] 2R_24338249_DEL [dm6]	AGTCC	GA	5.306e^-4	0.964	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_chinmo
2L	13963040	2L_13963040_SNP [dm3] 2L_13963040_SNP [dm6]	C	A	5.307e^-4	0.964	UTR_3_PRIME NimA UPSTREAM NimB1 DOWNSTREAM NimA
X	19887252	X_19887252_SNP [dm3] X_19993219_SNP [dm6]	G	A	5.310e^-4	0.964	INTERGENIC
X	20644953	X_20644953_SNP [dm3] X_20773926_SNP [dm6]	C	A	5.323e^-4	0.964	INTRON shakB
3L	18451817	3L_18451817_SNP [dm3] 3L_18458717_SNP [dm6]	A	T	5.325e^-4	0.964	DOWNSTREAM CG32196 INTERGENIC
2L	9950238	2L_9950238_SNP [dm3] 2L_9950238_SNP [dm6]	G	C	5.332e^-4	0.964	DOWNSTREAM mir-87 INTERGENIC
X	18012418	X_18012418_SNP [dm3] X_18118385_SNP [dm6]	A	G	5.337e^-4	0.964	INTERGENIC
X	1568419	X_1568419_SNP [dm3] X_1674386_SNP [dm6]	A	G	5.342e^-4	0.964	UTR_3_PRIME CG32809 DOWNSTREAM hfw & 1 other
2R	9477774	2R_9477774_SNP [dm3] 2R_13590269_SNP [dm6]	A	G	5.347e^-4	0.964	INTRON CG6191 & 1 other
3L	9791120	3L_9791120_SNP [dm3] 3L_9798020_SNP [dm6]	A	G	5.349e^-4	0.964	UPSTREAM Ilp1 & 1 other INTERGENIC
2R	20468922	2R_20468922_SNP [dm3] 2R_24581399_SNP [dm6]	T	A	5.365e^-4	0.964	UTR_5_PRIME pio INTRON pio	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	2021300	2L_2021300_SNP [dm3] 2L_2021300_SNP [dm6]	T	A	5.380e^-4	0.964	INTRON CG4238
3R	23196229	3R_23196229_INS [dm3] 3R_27370507_INS [dm6]	T	TT	5.380e^-4	0.964	UPSTREAM CR43476 INTRON CG42534	TF binding site mE1_TFBS_chinmo
2L	2250467	2L_2250467_SNP [dm3] 2L_2250467_SNP [dm6]	A	G	5.381e^-4	0.964	UTR_3_PRIME Ser12
3R	17305234	3R_17305234_SNP [dm3] 3R_21479512_SNP [dm6]	G	T	5.386e^-4	0.964	INTERGENIC
3R	17305413	3R_17305413_DEL [dm3] 3R_21479691_DEL [dm6]	GTAT	G	5.386e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	8092450	X_8092450_DEL [dm3] X_8198417_DEL [dm6]	AA	A	5.387e^-4	0.964	INTRON sdt	TF binding site mE1_TFBS_HSA
3R	9663863	3R_9663863_SNP [dm3] 3R_13838141_SNP [dm6]	G	C	5.395e^-4	0.964	UPSTREAM Nsf2 DOWNSTREAM CG31495 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	6213568	3L_6213568_SNP [dm3] 3L_6220468_SNP [dm6]	C	T	5.403e^-4	0.964	UPSTREAM pncr008:3L INTERGENIC
3L	11713383	3L_11713383_SNP [dm3] 3L_11720283_SNP [dm6]	G	T	5.411e^-4	0.964	UPSTREAM Bmcp INTERGENIC
2L	3387045	2L_3387045_SNP [dm3] 2L_3387045_SNP [dm6]	G	C	5.413e^-4	0.964	DOWNSTREAM Sfp23F & 1 other EXON CR45301
2L	3814112	2L_3814112_SNP [dm3] 2L_3814112_SNP [dm6]	T	C	5.416e^-4	0.964	UPSTREAM CG3407 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3R	17389804	3R_17389804_SNP [dm3] 3R_21564082_SNP [dm6]	A	C	5.422e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	16570995	3R_16570995_SNP [dm3] 3R_20745273_SNP [dm6]	G	A	5.439e^-4	0.964	SPLICE_SITE_REGION CG31200 SYNONYMOUS_CODING CG31200 INTRON CG42322
3L	11148905	3L_11148905_INS [dm3] 3L_11155805_INS [dm6]	G	GG	5.463e^-4	0.964	INTRON CG32082
3L	5979467	3L_5979467_SNP [dm3] 3L_5986367_SNP [dm6]	T	C	5.464e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	5874186	2R_5874186_SNP [dm3] 2R_9986681_SNP [dm6]	A	T	5.465e^-4	0.964	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Kr
X	12035718	X_12035718_SNP [dm3] X_12141685_SNP [dm6]	T	G	5.472e^-4	0.964	INTRON Ten-a
X	11559329	X_11559329_SNP [dm3] X_11665296_SNP [dm6]	A	G	5.487e^-4	0.964	INTRON Ptp10D
2R	9466257	2R_9466257_SNP [dm3] 2R_13578752_SNP [dm6]	A	G	5.501e^-4	0.964	EXON CR44366	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8715265	2R_8715265_SNP [dm3] 2R_12827760_SNP [dm6]	T	C	5.501e^-4	0.964	INTERGENIC
2R	12055374	2R_12055374_SNP [dm3] 2R_16167869_SNP [dm6]	A	G	5.503e^-4	0.964	INTRON lbk	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4352427	2L_4352427_SNP [dm3] 2L_4352427_SNP [dm6]	C	T	5.504e^-4	0.964	UPSTREAM CG15429 DOWNSTREAM CR44700 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	22562957	3R_22562957_SNP [dm3] 3R_26737235_SNP [dm6]	T	C	5.515e^-4	0.964	UPSTREAM CG6403 & 1 other INTERGENIC
2L	19928476	2L_19928476_SNP [dm3] 2L_19928476_SNP [dm6]	T	C	5.518e^-4	0.964	INTRON sick
3R	15002243	3R_15002243_DEL [dm3] 3R_19176521_DEL [dm6]	CC	C	5.518e^-4	0.964	UPSTREAM CG14282 INTERGENIC
2L	20061698	2L_20061698_SNP [dm3] 2L_20061698_SNP [dm6]	T	C	5.524e^-4	0.964	UTR_5_PRIME lok UPSTREAM barr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	4797974	X_4797974_SNP [dm3] X_4903941_SNP [dm6]	T	A	5.524e^-4	0.964	SPLICE_SITE_REGION CG42594 INTRON CG42594
3L	10023214	3L_10023214_SNP [dm3] 3L_10030114_SNP [dm6]	C	T	5.524e^-4	0.964	INTRON dpr6 EXON CR45155
X	12635743	X_12635743_SNP [dm3] X_12741710_SNP [dm6]	A	T	5.525e^-4	0.964	UPSTREAM CR45623 INTRON Smr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	739570	2L_739570_SNP [dm3] 2L_739570_SNP [dm6]	G	A	5.535e^-4	0.964	SYNONYMOUS_CODING Eaat2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21449047	3R_21449047_SNP [dm3] 3R_25623325_SNP [dm6]	G	A	5.538e^-4	0.964	SYNONYMOUS_CODING Npl4	TF binding site mE1_TFBS_sens
2R	5477634	2R_5477634_SNP [dm3] 2R_9590129_SNP [dm6]	G	T	5.538e^-4	0.964	SYNONYMOUS_CODING CG1827 UPSTREAM Map60 INTRON clos	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16243710	2R_16243710_SNP [dm3] 2R_20356205_SNP [dm6]	T	C	5.543e^-4	0.964	INTERGENIC
3L	8342963	3L_8342963_SNP [dm3] 3L_8349863_SNP [dm6]	C	T	5.576e^-4	0.964	INTRON GAPcenA	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8342981	3L_8342981_SNP [dm3] 3L_8349881_SNP [dm6]	A	T	5.576e^-4	0.964	INTRON GAPcenA	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	18658172	3R_18658172_SNP [dm3] 3R_22832450_SNP [dm6]	A	T	5.593e^-4	0.964	INTERGENIC
X	16135541	X_16135541_SNP [dm3] X_16241508_SNP [dm6]	C	G	5.598e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7189098	3L_7189098_SNP [dm3] 3L_7195998_SNP [dm6]	T	C	5.607e^-4	0.964	INTERGENIC
2R	9664150	2R_9664150_SNP [dm3] 2R_13776645_SNP [dm6]	T	C	5.612e^-4	0.964	INTRON Cpr50Ca
2L	7018921	2L_7018921_SNP [dm3] 2L_7018921_SNP [dm6]	T	C	5.613e^-4	0.964	SYNONYMOUS_CODING ade3	TF binding site mE1_TFBS_chinmo
2L	7122046	2L_7122046_SNP [dm3] 2L_7122046_SNP [dm6]	C	A	5.614e^-4	0.964	INTRON Pvf3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8828568	2R_8828568_SNP [dm3] 2R_12941063_SNP [dm6]	A	T	5.643e^-4	0.964	SYNONYMOUS_CODING Mdr49 DOWNSTREAM Sans	TF binding site mE1_TFBS_chinmo
2L	7187676	2L_7187676_SNP [dm3] 2L_7187676_SNP [dm6]	A	T	5.646e^-4	0.964	INTRON CG4496	TF binding site BDTNP1_TFBS_dl
2R	17358638	2R_17358638_SNP [dm3] 2R_21471133_SNP [dm6]	G	A	5.653e^-4	0.964	INTRON Sdc
2L	3975771	2L_3975771_SNP [dm3] 2L_3975771_SNP [dm6]	G	A	5.657e^-4	0.964	INTRON fred
3R	9812865	3R_9812865_DEL [dm3] 3R_13987143_DEL [dm6]	GG	G	5.666e^-4	0.964	INTRON rdx	TF binding site mE1_TFBS_Trl
2R	16919935	2R_16919935_SNP [dm3] 2R_21032430_SNP [dm6]	A	T	5.671e^-4	0.964	INTERGENIC
3L	13214428	3L_13214428_INS [dm3] 3L_13221328_INS [dm6]	T	TT	5.674e^-4	0.964	INTERGENIC
3L	1369123	3L_1369123_SNP [dm3] 3L_1369123_SNP [dm6]	G	A	5.699e^-4	0.964	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16934027	X_16934027_SNP [dm3] X_17039994_SNP [dm6]	A	G	5.704e^-4	0.964	INTRON CG45002
X	18481705	X_18481705_SNP [dm3] X_18587672_SNP [dm6]	A	G	5.711e^-4	0.964	UPSTREAM CR43492 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	18482017	X_18482017_SNP [dm3] X_18587984_SNP [dm6]	T	C	5.711e^-4	0.964	UPSTREAM CR43492 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_jumu
X	18482144	X_18482144_SNP [dm3] X_18588111_SNP [dm6]	G	A	5.711e^-4	0.964	UPSTREAM CR43492 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
X	18482215	X_18482215_SNP [dm3] X_18588182_SNP [dm6]	G	A	5.711e^-4	0.964	UPSTREAM CR43492 INTERGENIC
X	9801771	X_9801771_DEL [dm3] X_9907738_DEL [dm6]	CC	C	5.711e^-4	0.964	DOWNSTREAM CG1986 INTERGENIC
X	20502227	X_20502227_SNP [dm3] X_20631200_SNP [dm6]	A	C	5.718e^-4	0.964	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
X	12035589	X_12035589_SNP [dm3] X_12141556_SNP [dm6]	C	T	5.722e^-4	0.964	INTRON Ten-a
2R	2408385	2R_2408385_SNP [dm3] 2R_6520880_SNP [dm6]	G	A	5.738e^-4	0.964	INTRON jing
3L	10217877	3L_10217877_SNP [dm3] 3L_10224777_SNP [dm6]	G	A	5.746e^-4	0.964	INTRON scramb1	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	3364531	2L_3364531_SNP [dm3] 2L_3364531_SNP [dm6]	A	G	5.752e^-4	0.964	SYNONYMOUS_CODING CG34394	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22574074	3R_22574074_DEL [dm3] 3R_26748352_DEL [dm6]	ACGGACGCA	A	5.760e^-4	0.964	INTERGENIC
2L	4051610	2L_4051610_SNP [dm3] 2L_4051610_SNP [dm6]	G	T	5.769e^-4	0.964	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna
3R	25949022	3R_25949022_SNP [dm3] 3R_30123300_SNP [dm6]	G	A	5.775e^-4	0.964	UPSTREAM CG45072 DOWNSTREAM CG45073 INTERGENIC
3R	25949029	3R_25949029_SNP [dm3] 3R_30123307_SNP [dm6]	T	C	5.775e^-4	0.964	UPSTREAM CG45072 DOWNSTREAM CG45073 INTERGENIC
3R	25950551	3R_25950551_SNP [dm3] 3R_30124829_SNP [dm6]	C	G	5.775e^-4	0.964	UPSTREAM CG45073 DOWNSTREAM Ppi1 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	3066410	2R_3066410_SNP [dm3] 2R_7178905_SNP [dm6]	G	T	5.777e^-4	0.964	SYNONYMOUS_CODING CG33140 DOWNSTREAM CG11060 INTRON pk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8695552	3R_8695552_SNP [dm3] 3R_12869830_SNP [dm6]	A	T	5.780e^-4	0.964	INTERGENIC
3R	14138238	3R_14138238_SNP [dm3] 3R_18312516_SNP [dm6]	C	T	5.794e^-4	0.964	UPSTREAM PKD INTRON PKD	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	14138339	3R_14138339_SNP [dm3] 3R_18312617_SNP [dm6]	T	C	5.794e^-4	0.964	UPSTREAM PKD INTRON PKD	TF binding site mE1_TFBS_HSA
3R	14138340	3R_14138340_SNP [dm3] 3R_18312618_SNP [dm6]	T	C	5.794e^-4	0.964	UPSTREAM PKD INTRON PKD	TF binding site mE1_TFBS_HSA
3R	24601180	3R_24601180_SNP [dm3] 3R_28775458_SNP [dm6]	C	T	5.812e^-4	0.964	INTERGENIC
3R	12341643	3R_12341643_SNP [dm3] 3R_16515921_SNP [dm6]	C	T	5.836e^-4	0.964	INTRON CG42342
2L	8586376	2L_8586376_SNP [dm3] 2L_8586376_SNP [dm6]	G	A	5.838e^-4	0.964	INTRON Sema-1a
2R	19547836	2R_19547836_INS [dm3] 2R_23660313_INS [dm6]	T	TCTGT	5.842e^-4	0.964	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	1600679	X_1600679_SNP [dm3] X_1706646_SNP [dm6]	T	A	5.898e^-4	0.964	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	23560844	3R_23560844_SNP [dm3] 3R_27735122_SNP [dm6]	G	A	5.928e^-4	0.964	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1011653	3L_1011653_SNP [dm3] 3L_1011653_SNP [dm6]	G	A	5.931e^-4	0.964	INTRON trio
3R	2240173	3R_2240173_SNP [dm3] 3R_6414451_SNP [dm6]	T	G	5.937e^-4	0.964	INTRON gpp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	12305943	X_12305943_DEL [dm3] X_12411910_DEL [dm6]	TTTGTCTTATAT...	T	5.948e^-4	0.964	UTR_5_PRIME CG32652
2R	17590788	2R_17590788_SNP [dm3] 2R_21703283_SNP [dm6]	C	A	5.959e^-4	0.964	UPSTREAM HmgZ INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
3R	13364292	3R_13364292_SNP [dm3] 3R_17538570_SNP [dm6]	G	C	5.959e^-4	0.964	SYNONYMOUS_CODING l_3_07882	TF binding site mE1_TFBS_sens
3R	11813813	3R_11813813_SNP [dm3] 3R_15988091_SNP [dm6]	C	T	5.961e^-4	0.964	INTRON srp & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	6791264	X_6791264_SNP [dm3] X_6897231_SNP [dm6]	A	T	5.967e^-4	0.964	INTERGENIC
3R	6576366	3R_6576366_SNP [dm3] 3R_10750644_SNP [dm6]	C	T	5.976e^-4	0.964	UTR_5_PRIME TkR86C
3R	12167906	3R_12167906_SNP [dm3] 3R_16342184_SNP [dm6]	T	A	5.976e^-4	0.964	UPSTREAM pad & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3R	12169712	3R_12169712_SNP [dm3] 3R_16343990_SNP [dm6]	A	G	5.976e^-4	0.964	NON_SYNONYMOUS_CODING pad	TF binding site mE1_TFBS_HSA
X	7794367	X_7794367_SNP [dm3] X_7900334_SNP [dm6]	A	C	5.978e^-4	0.964	DOWNSTREAM snoRNA:Or-aca2 INTRON CR33222 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	10960732	2R_10960732_SNP [dm3] 2R_15073227_SNP [dm6]	A	G	5.993e^-4	0.964	INTERGENIC
2R	10960792	2R_10960792_SNP [dm3] 2R_15073287_SNP [dm6]	C	A	5.993e^-4	0.964	INTERGENIC
3L	3756441	3L_3756441_SNP [dm3] 3L_3756441_SNP [dm6]	A	C	5.993e^-4	0.964	INTRON CG32264	TF binding site mE1_TFBS_Kr mE1_TFBS_Trl
3L	3756472	3L_3756472_SNP [dm3] 3L_3756472_SNP [dm6]	G	A	5.993e^-4	0.964	INTRON CG32264	TF binding site mE1_TFBS_Kr mE1_TFBS_Trl
3L	3756505	3L_3756505_SNP [dm3] 3L_3756505_SNP [dm6]	A	G	5.993e^-4	0.964	INTRON CG32264	TF binding site mE1_TFBS_Kr mE1_TFBS_Trl
2R	15394231	2R_15394231_SNP [dm3] 2R_19506726_SNP [dm6]	C	T	6.012e^-4	0.964	UPSTREAM tRNA:H:56E INTERGENIC
3L	6941914	3L_6941914_SNP [dm3] 3L_6948814_SNP [dm6]	T	G	6.013e^-4	0.964	UTR_3_PRIME tow DOWNSTREAM CG10077 & 1 other
2L	5580313	2L_5580313_SNP [dm3] 2L_5580313_SNP [dm6]	T	C	6.014e^-4	0.964	SYNONYMOUS_CODING CG14011	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14001933	2L_14001933_SNP [dm3] 2L_14001933_SNP [dm6]	C	A	6.033e^-4	0.964	UPSTREAM rk INTERGENIC
X	11097358	X_11097358_SNP [dm3] X_11203325_SNP [dm6]	A	G	6.037e^-4	0.964	DOWNSTREAM CG11106 INTERGENIC
2L	14663575	2L_14663575_SNP [dm3] 2L_14663575_SNP [dm6]	C	A	6.037e^-4	0.964	INTRON osp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	2961051	2L_2961051_SNP [dm3] 2L_2961051_SNP [dm6]	G	A	6.041e^-4	0.964	INTRON Rbp9
3R	13364544	3R_13364544_SNP [dm3] 3R_17538822_SNP [dm6]	C	T	6.042e^-4	0.964	SYNONYMOUS_CODING l_3_07882	TF binding site mE1_TFBS_sens
3R	14589698	3R_14589698_SNP [dm3] 3R_18763976_SNP [dm6]	T	C	6.043e^-4	0.964	INTRON CG7720
3L	11772574	3L_11772574_SNP [dm3] 3L_11779474_SNP [dm6]	G	A	6.062e^-4	0.964	NON_SYNONYMOUS_CODING CG14131 INTRON Pi3K68D	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8386486	3L_8386486_SNP [dm3] 3L_8393386_SNP [dm6]	G	C	6.064e^-4	0.964	SYNONYMOUS_CODING Jon66Cii	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	16553106	3R_16553106_SNP [dm3] 3R_20727384_SNP [dm6]	G	A	6.075e^-4	0.964	INTERGENIC
2R	5249663	2R_5249663_SNP [dm3] 2R_9362158_SNP [dm6]	T	C	6.082e^-4	0.964	DOWNSTREAM CG12158 INTRON CG13954	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	13043550	3R_13043550_SNP [dm3] 3R_17217828_SNP [dm6]	G	A	6.086e^-4	0.964	SYNONYMOUS_CODING CG31262 UTR_3_PRIME CG31262
2L	9150637	2L_9150637_SNP [dm3] 2L_9150637_SNP [dm6]	A	T	6.096e^-4	0.964	UPSTREAM CG32982 INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	7943945	3R_7943945_SNP [dm3] 3R_12118223_SNP [dm6]	A	G	6.109e^-4	0.964	INTERGENIC
2L	8369743	2L_8369743_INS [dm3] 2L_8369743_INS [dm6]	T	TT	6.112e^-4	0.964	UTR_3_PRIME Pp2A-29B UPSTREAM CG17292 DOWNSTREAM CR45341	TF binding site mE1_TFBS_cad
2L	12604084	2L_12604084_SNP [dm3] 2L_12604084_SNP [dm6]	A	G	6.113e^-4	0.964	INTRON nub
2L	12604138	2L_12604138_SNP [dm3] 2L_12604138_SNP [dm6]	A	T	6.113e^-4	0.964	INTRON nub
2R	12453529	2R_12453529_DEL [dm3] 2R_16566024_DEL [dm6]	AGA	A	6.124e^-4	0.964	UTR_5_PRIME CG4945 UPSTREAM DAT
2L	7878589	2L_7878589_SNP [dm3] 2L_7878589_SNP [dm6]	A	G	6.124e^-4	0.964	SYNONYMOUS_CODING spz3	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11030203	2L_11030203_SNP [dm3] 2L_11030203_SNP [dm6]	A	G	6.126e^-4	0.964	NON_SYNONYMOUS_CODING Samuel UTR_3_PRIME Samuel	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13999156	2L_13999156_DEL [dm3] 2L_13999156_DEL [dm6]	AT	A	6.128e^-4	0.964	INTRON rk
3R	8614421	3R_8614421_SNP [dm3] 3R_12788699_SNP [dm6]	T	C	6.166e^-4	0.964	INTERGENIC
2L	2066892	2L_2066892_SNP [dm3] 2L_2066892_SNP [dm6]	T	C	6.168e^-4	0.964	SYNONYMOUS_CODING dpr3
3L	11268054	3L_11268054_SNP [dm3] 3L_11274954_SNP [dm6]	T	A	6.170e^-4	0.964	UPSTREAM CR44720 INTERGENIC
2R	17044088	2R_17044088_SNP [dm3] 2R_21156583_SNP [dm6]	C	G	6.175e^-4	0.964	INTRON CG30389	TF binding site BDTNP1_TFBS_twi
2R	17098516	2R_17098516_SNP [dm3] 2R_21211011_SNP [dm6]	C	A	6.191e^-4	0.964	UTR_5_PRIME CG44245 DOWNSTREAM Glycogenin INTRON CG44245
2L	19940539	2L_19940539_SNP [dm3] 2L_19940539_SNP [dm6]	T	C	6.195e^-4	0.964	INTRON sick
3L	10025654	3L_10025654_SNP [dm3] 3L_10032554_SNP [dm6]	G	C	6.199e^-4	0.964	INTRON dpr6
3L	10025658	3L_10025658_SNP [dm3] 3L_10032558_SNP [dm6]	T	A	6.199e^-4	0.964	INTRON dpr6
2R	20550806	2R_20550806_SNP [dm3] 2R_24663283_SNP [dm6]	A	G	6.203e^-4	0.964	DOWNSTREAM CG3663 & 1 other INTRON Cpr60D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	15276794	2L_15276794_SNP [dm3] 2L_15276794_SNP [dm6]	A	G	6.206e^-4	0.964	INTERGENIC
X	18509528	X_18509528_SNP [dm3] X_18615495_SNP [dm6]	T	C	6.213e^-4	0.964	INTRON CG15040	TF binding site mE1_TFBS_chinmo
2L	1938358	2L_1938358_SNP [dm3] 2L_1938358_SNP [dm6]	T	A	6.225e^-4	0.964	UPSTREAM tRNA:G3:22BCa INTRON CG7337	TF binding site mE1_TFBS_HSA
3L	18713507	3L_18713507_SNP [dm3] 3L_18720407_SNP [dm6]	T	G	6.236e^-4	0.964	INTERGENIC
2R	19231261	2R_19231261_SNP [dm3] 2R_23343738_SNP [dm6]	A	T	6.239e^-4	0.964	INTRON CG3502
2R	19231284	2R_19231284_SNP [dm3] 2R_23343761_SNP [dm6]	G	A	6.239e^-4	0.964	SPLICE_SITE_REGION CG3502 SYNONYMOUS_CODING CG3502
2L	6005107	2L_6005107_SNP [dm3] 2L_6005107_SNP [dm6]	C	G	6.247e^-4	0.964	SYNONYMOUS_CODING Gal EXON CR43866	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17324025	2R_17324025_SNP [dm3] 2R_21436520_SNP [dm6]	C	T	6.252e^-4	0.964	INTRON Sdc
2R	3076870	2R_3076870_SNP [dm3] 2R_7189365_SNP [dm6]	G	A	6.259e^-4	0.964	INTRON pk
2R	5874628	2R_5874628_SNP [dm3] 2R_9987123_SNP [dm6]	G	A	6.264e^-4	0.964	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	7171922	2L_7171922_SNP [dm3] 2L_7171922_SNP [dm6]	T	G	6.273e^-4	0.964	INTERGENIC
2L	7171923	2L_7171923_SNP [dm3] 2L_7171923_SNP [dm6]	T	A	6.273e^-4	0.964	INTERGENIC
2L	7171929	2L_7171929_DEL [dm3] 2L_7171929_DEL [dm6]	TCTTAATTT	T	6.273e^-4	0.964	INTERGENIC
2L	7171958	2L_7171958_SNP [dm3] 2L_7171958_SNP [dm6]	A	T	6.273e^-4	0.964	INTERGENIC
2L	11979846	2L_11979846_SNP [dm3] 2L_11979846_SNP [dm6]	G	C	6.275e^-4	0.964	INTERGENIC
3R	25971695	3R_25971695_SNP [dm3] 3R_30145973_SNP [dm6]	T	G	6.275e^-4	0.964	INTRON AdoR
2L	3969109	2L_3969109_SNP [dm3] 2L_3969109_SNP [dm6]	G	A	6.282e^-4	0.964	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	3969148	2L_3969148_SNP [dm3] 2L_3969148_SNP [dm6]	G	T	6.282e^-4	0.964	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	3969151	2L_3969151_SNP [dm3] 2L_3969151_SNP [dm6]	A	G	6.282e^-4	0.964	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	3969199	2L_3969199_SNP [dm3] 2L_3969199_SNP [dm6]	T	A	6.282e^-4	0.964	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	3969204	2L_3969204_SNP [dm3] 2L_3969204_SNP [dm6]	A	T	6.282e^-4	0.964	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	3969242	2L_3969242_SNP [dm3] 2L_3969242_SNP [dm6]	T	C	6.282e^-4	0.964	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad

Missing results

By genomic position
Variant impact
Gene name

pc_FPKP_PElem_HS phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results