©2022-2025 Deplancke lab, EPFL, 1015 Lausanne
By genomic position | |
Variant impact | |
Gene name |
Involved in binding site | |
Binding site |
Chromosome | Position | ID | Reference | Variant | p-value | FDR_BH | Transcript annotation | Binding site annotation | |
---|---|---|---|---|---|---|---|---|---|
2R | 11277421 | 2R_11277421_SNP [dm3] 2R_15389916_SNP [dm6] | C | A | 1.533e-6 | 1 |
INTERGENIC
|
||
2R | 11277411 | 2R_11277411_SNP [dm3] 2R_15389906_SNP [dm6] | A | G | 2.972e-6 | 1 |
INTERGENIC
|
||
2R | 11277664 | 2R_11277664_SNP [dm3] 2R_15390159_SNP [dm6] | A | T | 5.488e-6 | 1 |
INTERGENIC
|
||
2R | 10817872 | 2R_10817872_SNP [dm3] 2R_14930367_SNP [dm6] | T | C | 7.445e-6 | 1 |
SYNONYMOUS_CODING
CG10253 |
TF binding site
mE1_TFBS_HSA mE1_TFBS_inv
|
|
2R | 5400620 | 2R_5400620_SNP [dm3] 2R_9513115_SNP [dm6] | T | C | 1.253e-5 | 1 |
INTRON
brp |
||
2L | 1041302 | 2L_1041302_SNP [dm3] 2L_1041302_SNP [dm6] | G | T | 1.699e-5 | 1 |
INTRON
IA-2 |
||
X | 15797130 | X_15797130_SNP [dm3] X_15903097_SNP [dm6] | C | A | 1.799e-5 | 1 |
INTRON
shi |
||
2R | 11277297 | 2R_11277297_SNP [dm3] 2R_15389792_SNP [dm6] | A | G | 1.936e-5 | 1 |
INTERGENIC
|
||
2R | 11277313 | 2R_11277313_INS [dm3] 2R_15389808_INS [dm6] | A | ACTG | 1.936e-5 | 1 |
INTERGENIC
|
||
2R | 11277331 | 2R_11277331_SNP [dm3] 2R_15389826_SNP [dm6] | C | T | 1.936e-5 | 1 |
INTERGENIC
|
||
2R | 11277343 | 2R_11277343_SNP [dm3] 2R_15389838_SNP [dm6] | A | G | 1.936e-5 | 1 |
INTERGENIC
|
||
X | 8225224 | X_8225224_SNP [dm3] X_8331191_SNP [dm6] | C | T | 2.073e-5 | 1 |
INTRON
nAChRalpha3 |
||
2R | 14533563 | 2R_14533563_SNP [dm3] 2R_18646058_SNP [dm6] | A | C | 2.391e-5 | 1 |
INTRON
SP2637 |
||
3R | 14283012 | 3R_14283012_SNP [dm3] 3R_18457290_SNP [dm6] | A | G | 2.425e-5 | 1 |
INTRON
fru |
||
2R | 10527798 | 2R_10527798_SNP [dm3] 2R_14640293_SNP [dm6] | T | C | 2.604e-5 | 1 |
NON_SYNONYMOUS_CODING
CG12862 DOWNSTREAM CG42715 |
TF binding site
BDTNP1_TFBS_dl mE1_TFBS_HSA
|
|
3R | 16910867 | 3R_16910867_SNP [dm3] 3R_21085145_SNP [dm6] | C | G | 2.781e-5 | 1 |
INTRON
RhoGAP93B |
||
3R | 14283027 | 3R_14283027_DEL [dm3] 3R_18457305_DEL [dm6] | TATAT | T | 3.016e-5 | 1 |
INTRON
fru |
||
3L | 20100851 | 3L_20100851_SNP [dm3] 3L_20107751_SNP [dm6] | C | T | 3.169e-5 | 1 |
DOWNSTREAM
Ir76b & 1 other INTERGENIC |
TF binding site
BDTNP1_TFBS_dl
transposable element FlyBase |
|
X | 10292788 | X_10292788_SNP [dm3] X_10398755_SNP [dm6] | A | G | 3.250e-5 | 1 |
INTRON
flw |
||
2R | 11277323 | 2R_11277323_SNP [dm3] 2R_15389818_SNP [dm6] | G | A | 3.272e-5 | 1 |
INTERGENIC
|
||
2R | 7373445 | 2R_7373445_SNP [dm3] 2R_11485940_SNP [dm6] | C | T | 3.387e-5 | 1 |
INTRON
inv |
||
2R | 12872795 | 2R_12872795_SNP [dm3] 2R_16985290_SNP [dm6] | T | G | 3.439e-5 | 1 |
INTRON
Cbp53E |
||
3L | 18389741 | 3L_18389741_SNP [dm3] 3L_18396641_SNP [dm6] | T | A | 3.642e-5 | 1 |
DOWNSTREAM
rpr INTERGENIC |
||
2L | 17170505 | 2L_17170505_SNP [dm3] 2L_17170505_SNP [dm6] | C | T | 3.730e-5 | 1 |
START_GAINED
CG34106 UTR_5_PRIME CG34106 UTR_3_PRIME beat-IIIa UPSTREAM CG34106 |
||
3R | 16911319 | 3R_16911319_SNP [dm3] 3R_21085597_SNP [dm6] | A | G | 3.842e-5 | 1 |
NON_SYNONYMOUS_CODING
RhoGAP93B |
TF binding site
mE1_TFBS_cad
|
|
2R | 5398188 | 2R_5398188_SNP [dm3] 2R_9510683_SNP [dm6] | A | T | 3.851e-5 | 1 |
INTRON
brp |
TF binding site
mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
|
|
3R | 16945548 | 3R_16945548_SNP [dm3] 3R_21119826_SNP [dm6] | A | T | 4.034e-5 | 1 |
UTR_3_PRIME
slmb UPSTREAM Bdbt DOWNSTREAM slmb |
TF binding site
mE1_TFBS_HSA
|
|
2R | 10526255 | 2R_10526255_SNP [dm3] 2R_14638750_SNP [dm6] | T | A | 4.065e-5 | 1 |
UTR_3_PRIME
CG43236 UPSTREAM CG42715 |
TF binding site
mE1_TFBS_inv
|
|
3R | 10308160 | 3R_10308160_DEL [dm3] 3R_14482438_DEL [dm6] | ATAATGATAATGAAAA... | A | 4.497e-5 | 1 |
UPSTREAM
cv-c INTERGENIC |
TF binding site
BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
|
|
3R | 10308178 | 3R_10308178_DEL [dm3] 3R_14482456_DEL [dm6] | TCACAAGTG | T | 4.497e-5 | 1 |
UPSTREAM
cv-c INTERGENIC |
TF binding site
BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
|
|
3R | 10308188 | 3R_10308188_SNP [dm3] 3R_14482466_SNP [dm6] | G | A | 4.497e-5 | 1 |
UPSTREAM
cv-c INTERGENIC |
TF binding site
BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
|
|
2R | 14703450 | 2R_14703450_SNP [dm3] 2R_18815945_SNP [dm6] | C | T | 4.640e-5 | 1 |
UTR_5_PRIME
CG15096 UPSTREAM CG15096 DOWNSTREAM CR43418 |
TF binding site
mE1_TFBS_HSA mE1_TFBS_sens
|
|
2L | 8565954 | 2L_8565954_SNP [dm3] 2L_8565954_SNP [dm6] | C | A | 4.709e-5 | 1 |
INTRON
Sema-1a |
||
2R | 9605748 | 2R_9605748_SNP [dm3] 2R_13718243_SNP [dm6] | C | T | 4.840e-5 | 1 |
INTRON
fas |
||
2R | 14179300 | 2R_14179300_SNP [dm3] 2R_18291795_SNP [dm6] | T | G | 4.842e-5 | 1 |
UPSTREAM
CG14502 INTRON CG14502 & 1 other |
regulatory region
REDfly_CRMs
TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA |
|
2R | 19543550 | 2R_19543550_SNP [dm3] 2R_23656027_SNP [dm6] | T | G | 4.889e-5 | 1 |
INTERGENIC
|
TF binding site
BDTNP1_TFBS_dl
|
|
2R | 15489983 | 2R_15489983_SNP [dm3] 2R_19602478_SNP [dm6] | G | A | 4.946e-5 | 1 |
UPSTREAM
CR44473 INTRON sm |
||
3R | 9423488 | 3R_9423488_SNP [dm3] 3R_13597766_SNP [dm6] | A | C | 5.081e-5 | 1 |
INTERGENIC
|
TF binding site
mE1_TFBS_inv
|
|
2R | 11277290 | 2R_11277290_SNP [dm3] 2R_15389785_SNP [dm6] | A | C | 5.204e-5 | 1 |
INTERGENIC
|
||
3L | 17559829 | 3L_17559829_SNP [dm3] 3L_17566729_SNP [dm6] | G | A | 5.248e-5 | 1 |
UPSTREAM
snoRNA:Me28S-A576 INTRON Eip74EF |
TF binding site
mE1_TFBS_cad mE1_TFBS_HSA
|
|
2L | 2111230 | 2L_2111230_SNP [dm3] 2L_2111230_SNP [dm6] | T | C | 5.253e-5 | 1 |
INTERGENIC
|
||
2L | 3974407 | 2L_3974407_DEL [dm3] 2L_3974407_DEL [dm6] | TTTATTT | T | 5.572e-5 | 1 |
INTRON
fred |
||
2R | 3732280 | 2R_3732280_SNP [dm3] 2R_7844775_SNP [dm6] | C | T | 5.682e-5 | 1 |
INTRON
Dgk |
||
3R | 10308338 | 3R_10308338_DEL [dm3] 3R_14482616_DEL [dm6] | GGTTAGCAGAGT... | G | 5.819e-5 | 1 |
UPSTREAM
cv-c INTERGENIC |
TF binding site
BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
|
|
3R | 10308351 | 3R_10308351_SNP [dm3] 3R_14482629_SNP [dm6] | C | T | 5.819e-5 | 1 |
UPSTREAM
cv-c INTERGENIC |
TF binding site
BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
|
|
3R | 10308503 | 3R_10308503_SNP [dm3] 3R_14482781_SNP [dm6] | A | T | 5.819e-5 | 1 |
INTERGENIC
|
TF binding site
BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
|
|
2R | 13493193 | 2R_13493193_SNP [dm3] 2R_17605688_SNP [dm6] | G | A | 6.057e-5 | 1 |
DOWNSTREAM
tRNA:CR30231 INTRON CG10936 |
||
2R | 10790443 | 2R_10790443_SNP [dm3] 2R_14902938_SNP [dm6] | A | G | 6.296e-5 | 1 |
SYNONYMOUS_CODING
CG10249 UTR_3_PRIME Cyp317a1 |
||
2R | 13491426 | 2R_13491426_SNP [dm3] 2R_17603921_SNP [dm6] | A | T | 6.391e-5 | 1 |
UTR_3_PRIME
lack UPSTREAM tRNA:CR30231 DOWNSTREAM tRNA:CR30333 |
||
2R | 8507140 | 2R_8507140_SNP [dm3] 2R_12619635_SNP [dm6] | T | G | 6.567e-5 | 1 |
UTR_3_PRIME
CG45086 & 1 other DOWNSTREAM Galphaq |
TF binding site
mE1_TFBS_kn mE1_TFBS_zfh1
|
|
2L | 3732366 | 2L_3732366_SNP [dm3] 2L_3732366_SNP [dm6] | C | T | 6.594e-5 | 1 |
INTRON
CG10019 |
||
X | 15797128 | X_15797128_SNP [dm3] X_15903095_SNP [dm6] | G | A | 6.699e-5 | 1 |
INTRON
shi |
||
2R | 9217827 | 2R_9217827_SNP [dm3] 2R_13330322_SNP [dm6] | C | T | 6.814e-5 | 1 |
UPSTREAM
mir-184 EXON CR44206 |
TF binding site
mE1_TFBS_cad
|
|
3R | 14282906 | 3R_14282906_SNP [dm3] 3R_18457184_SNP [dm6] | G | A | 6.881e-5 | 1 |
INTRON
fru |
||
3R | 14282948 | 3R_14282948_SNP [dm3] 3R_18457226_SNP [dm6] | A | G | 6.881e-5 | 1 |
INTRON
fru |
||
3R | 14282987 | 3R_14282987_SNP [dm3] 3R_18457265_SNP [dm6] | G | A | 6.881e-5 | 1 |
INTRON
fru |
||
3R | 14282997 | 3R_14282997_SNP [dm3] 3R_18457275_SNP [dm6] | A | T | 6.881e-5 | 1 |
INTRON
fru |
||
2L | 9687822 | 2L_9687822_SNP [dm3] 2L_9687822_SNP [dm6] | A | T | 6.897e-5 | 1 |
INTRON
Pka-C1 |
||
2R | 11588977 | 2R_11588977_SNP [dm3] 2R_15701472_SNP [dm6] | C | T | 7.131e-5 | 1 |
NON_SYNONYMOUS_CODING
CG30080 UTR_5_PRIME CG42662 |
TF binding site
BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
|
|
2R | 9739079 | 2R_9739079_SNP [dm3] 2R_13851574_SNP [dm6] | G | A | 7.372e-5 | 1 |
NON_SYNONYMOUS_CODING
CG30485 |
TF binding site
mE1_TFBS_HSA
|
|
2R | 9322940 | 2R_9322940_SNP [dm3] 2R_13435435_SNP [dm6] | C | T | 7.561e-5 | 1 |
DOWNSTREAM
Ser8 INTRON CG42321 |
TF binding site
mE1_TFBS_chinmo
|
|
2R | 14273408 | 2R_14273408_SNP [dm3] 2R_18385903_SNP [dm6] | C | T | 7.609e-5 | 1 |
UPSTREAM
CG15067 & 1 other DOWNSTREAM CG18107 INTERGENIC |
||
3L | 13735309 | 3L_13735309_SNP [dm3] 3L_13742209_SNP [dm6] | A | G | 7.649e-5 | 1 |
INTRON
bru-3 |
||
X | 2411269 | X_2411269_SNP [dm3] X_2517236_SNP [dm6] | T | C | 7.683e-5 | 1 |
INTRON
trol |
TF binding site
BDTNP1_TFBS_dl
|
|
2R | 19491824 | 2R_19491824_SNP [dm3] 2R_23604301_SNP [dm6] | G | T | 7.740e-5 | 1 |
DOWNSTREAM
CG5398 INTRON CG17664 |
TF binding site
mE1_TFBS_cad
|
|
3R | 21789572 | 3R_21789572_SNP [dm3] 3R_25963850_SNP [dm6] | T | A | 7.892e-5 | 1 |
INTRON
boss |
||
3R | 21789604 | 3R_21789604_SNP [dm3] 3R_25963882_SNP [dm6] | A | T | 7.892e-5 | 1 |
INTRON
boss |
||
3R | 21789624 | 3R_21789624_SNP [dm3] 3R_25963902_SNP [dm6] | A | T | 7.892e-5 | 1 |
INTRON
boss |
||
3R | 21789630 | 3R_21789630_SNP [dm3] 3R_25963908_SNP [dm6] | G | C | 7.892e-5 | 1 |
INTRON
boss |
||
3R | 21789633 | 3R_21789633_SNP [dm3] 3R_25963911_SNP [dm6] | C | A | 7.892e-5 | 1 |
SPLICE_SITE_REGION
boss INTRON boss |
||
3L | 15751996 | 3L_15751996_SNP [dm3] 3L_15758896_SNP [dm6] | A | G | 7.910e-5 | 1 |
INTERGENIC
|
TF binding site
BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
|
|
3L | 7444824 | 3L_7444824_SNP [dm3] 3L_7451724_SNP [dm6] | A | G | 8.184e-5 | 1 |
SYNONYMOUS_CODING
CG33278 INTRON CG42458 |
||
3R | 15073219 | 3R_15073219_SNP [dm3] 3R_19247497_SNP [dm6] | C | T | 8.275e-5 | 1 |
SYNONYMOUS_CODING
CG5217 |
TF binding site
mE1_TFBS_sens
|
|
2R | 5399858 | 2R_5399858_SNP [dm3] 2R_9512353_SNP [dm6] | G | C | 8.936e-5 | 1 |
INTRON
brp |
||
2R | 5399647 | 2R_5399647_SNP [dm3] 2R_9512142_SNP [dm6] | G | T | 8.939e-5 | 1 |
INTRON
brp |
||
2R | 5402420 | 2R_5402420_SNP [dm3] 2R_9514915_SNP [dm6] | C | T | 8.939e-5 | 1 |
INTRON
brp |
||
2R | 7077104 | 2R_7077104_SNP [dm3] 2R_11189599_SNP [dm6] | C | A | 9.015e-5 | 1 |
INTRON
shn |
TF binding site
BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
|
|
2R | 7077116 | 2R_7077116_SNP [dm3] 2R_11189611_SNP [dm6] | T | C | 9.015e-5 | 1 |
INTRON
shn |
TF binding site
BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
|
|
2R | 10855454 | 2R_10855454_SNP [dm3] 2R_14967949_SNP [dm6] | T | G | 9.157e-5 | 1 |
INTRON
ckn |
TF binding site
mE1_TFBS_HSA
|
|
3R | 24107259 | 3R_24107259_SNP [dm3] 3R_28281537_SNP [dm6] | T | G | 9.184e-5 | 1 |
INTERGENIC
|
||
2L | 1901190 | 2L_1901190_SNP [dm3] 2L_1901190_SNP [dm6] | G | T | 9.219e-5 | 1 |
INTRON
CG7337 |
||
2R | 7247632 | 2R_7247632_SNP [dm3] 2R_11360127_SNP [dm6] | G | A | 9.219e-5 | 1 |
UTR_5_PRIME
ix UPSTREAM CG12384 & 1 other |
TF binding site
BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
|
|
3L | 13740766 | 3L_13740766_SNP [dm3] 3L_13747666_SNP [dm6] | A | C | 9.337e-5 | 1 |
INTRON
bru-3 |
||
3L | 5442294 | 3L_5442294_SNP [dm3] 3L_5449194_SNP [dm6] | A | C | 9.397e-5 | 1 |
INTERGENIC
|
||
2R | 14533735 | 2R_14533735_SNP [dm3] 2R_18646230_SNP [dm6] | C | A | 9.426e-5 | 1 |
INTRON
SP2637 |
||
2R | 9537050 | 2R_9537050_SNP [dm3] 2R_13649545_SNP [dm6] | T | C | 9.799e-5 | 1 |
INTRON
fas |
||
2R | 9314848 | 2R_9314848_SNP [dm3] 2R_13427343_SNP [dm6] | C | G | 9.809e-5 | 1 |
INTRON
CG42321 |
TF binding site
BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
|
|
2R | 5408565 | 2R_5408565_DEL [dm3] 2R_9521060_DEL [dm6] | CA | T | 9.854e-5 | 1 |
INTRON
brp |
TF binding site
BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
|
|
3R | 5471313 | 3R_5471313_SNP [dm3] 3R_9645591_SNP [dm6] | C | G | 9.945e-5 | 1 |
SYNONYMOUS_CODING
Fst INTRON Dh44 |
TF binding site
mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
|
|
2R | 10527827 | 2R_10527827_SNP [dm3] 2R_14640322_SNP [dm6] | T | C | 1.026e-4 | 1 |
SYNONYMOUS_CODING
CG12862 DOWNSTREAM CG42715 |
TF binding site
BDTNP1_TFBS_dl mE1_TFBS_HSA
|
|
2R | 7083150 | 2R_7083150_SNP [dm3] 2R_11195645_SNP [dm6] | C | A | 1.040e-4 | 1 |
INTRON
shn |
TF binding site
BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
|
|
3R | 14207821 | 3R_14207821_SNP [dm3] 3R_18382099_SNP [dm6] | T | C | 1.044e-4 | 1 |
SYNONYMOUS_CODING
CG14309 UPSTREAM CG7675 |
TF binding site
mE1_TFBS_cad
|
|
3R | 14283601 | 3R_14283601_SNP [dm3] 3R_18457879_SNP [dm6] | G | A | 1.048e-4 | 1 |
INTRON
fru |
||
3L | 3506775 | 3L_3506775_SNP [dm3] 3L_3506775_SNP [dm6] | A | G | 1.053e-4 | 1 |
SYNONYMOUS_CODING
CG42324 |
TF binding site
mE1_TFBS_cad
|
|
2R | 18844592 | 2R_18844592_SNP [dm3] 2R_22957069_SNP [dm6] | A | T | 1.061e-4 | 1 |
DOWNSTREAM
CR44780 INTERGENIC |
||
2R | 5023348 | 2R_5023348_SNP [dm3] 2R_9135843_SNP [dm6] | G | T | 1.070e-4 | 1 |
SYNONYMOUS_CODING
alc DOWNSTREAM Hydr1 |
TF binding site
mE1_TFBS_cad
|
|
2R | 11316139 | 2R_11316139_SNP [dm3] 2R_15428634_SNP [dm6] | T | C | 1.073e-4 | 1 |
UPSTREAM
CG34188 INTRON CG43729 |
||
2R | 19491828 | 2R_19491828_SNP [dm3] 2R_23604305_SNP [dm6] | T | A | 1.080e-4 | 1 |
DOWNSTREAM
CG5398 INTRON CG17664 |
TF binding site
mE1_TFBS_cad
|
|
2L | 7592305 | 2L_7592305_SNP [dm3] 2L_7592305_SNP [dm6] | C | G | 1.089e-4 | 1 |
INTERGENIC
|
TF binding site
BDTNP1_TFBS_dl
|
|
2R | 5023303 | 2R_5023303_SNP [dm3] 2R_9135798_SNP [dm6] | G | A | 1.092e-4 | 1 |
SYNONYMOUS_CODING
alc DOWNSTREAM Hydr1 |
TF binding site
mE1_TFBS_cad
|