DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.640e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	3.3893	0.0656

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1878 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	12281534	3L_12281534_SNP [dm3] 3L_12288434_SNP [dm6]	G	A	7.859e^-7	0.535	DOWNSTREAM CR45658 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	12281536	3L_12281536_SNP [dm3] 3L_12288436_SNP [dm6]	A	G	7.859e^-7	0.535	DOWNSTREAM CR45658 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	6224210	3L_6224210_SNP [dm3] 3L_6231110_SNP [dm6]	G	A	3.243e^-6	0.535	DOWNSTREAM CG13299 INTERGENIC
3R	13895519	3R_13895519_SNP [dm3] 3R_18069797_SNP [dm6]	C	T	3.310e^-6	0.535	INTERGENIC
3L	12277874	3L_12277874_SNP [dm3] 3L_12284774_SNP [dm6]	G	T	4.080e^-6	0.535	INTERGENIC
3R	13895471	3R_13895471_SNP [dm3] 3R_18069749_SNP [dm6]	T	A	4.450e^-6	0.535	INTERGENIC
X	11152349	X_11152349_SNP [dm3] X_11258316_SNP [dm6]	T	G	5.060e^-6	0.535	INTRON CG44422
2L	16937946	2L_16937946_SNP [dm3] 2L_16937946_SNP [dm6]	C	A	7.341e^-6	0.535	INTERGENIC
X	18401895	X_18401895_SNP [dm3] X_18507862_SNP [dm6]	G	A	7.964e^-6	0.535	SYNONYMOUS_CODING Ggt-1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	2877161	X_2877161_SNP [dm3] X_2983128_SNP [dm6]	A	T	8.249e^-6	0.535	INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	8759370	3L_8759370_SNP [dm3] 3L_8766270_SNP [dm6]	T	C	8.392e^-6	0.535	UPSTREAM Fhos INTRON Fhos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	4487449	3L_4487449_SNP [dm3] 3L_4487449_SNP [dm6]	T	G	8.435e^-6	0.535	SYNONYMOUS_CODING CG13722
3L	8759403	3L_8759403_SNP [dm3] 3L_8766303_SNP [dm6]	C	G	8.803e^-6	0.535	UPSTREAM Fhos INTRON Fhos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	8752483	3L_8752483_SNP [dm3] 3L_8759383_SNP [dm6]	T	G	9.209e^-6	0.535	SPLICE_SITE_REGION Fhos INTRON Fhos
3L	8752504	3L_8752504_SNP [dm3] 3L_8759404_SNP [dm6]	A	C	9.209e^-6	0.535	INTRON Fhos
X	2877195	X_2877195_SNP [dm3] X_2983162_SNP [dm6]	T	C	9.356e^-6	0.535	INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	18022014	2R_18022014_SNP [dm3] 2R_22134509_SNP [dm6]	G	A	1.050e^-5	0.535	INTERGENIC
3L	7991987	3L_7991987_SNP [dm3] 3L_7998887_SNP [dm6]	C	A	1.080e^-5	0.535	INTRON nmo
3L	8754057	3L_8754057_SNP [dm3] 3L_8760957_SNP [dm6]	T	C	1.118e^-5	0.535	SYNONYMOUS_CODING Fhos UPSTREAM Fhos
3L	8752611	3L_8752611_SNP [dm3] 3L_8759511_SNP [dm6]	C	T	1.133e^-5	0.535	SYNONYMOUS_CODING Fhos
3L	8760238	3L_8760238_SNP [dm3] 3L_8767138_SNP [dm6]	G	C	1.133e^-5	0.535	INTRON Fhos	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	8760309	3L_8760309_SNP [dm3] 3L_8767209_SNP [dm6]	C	A	1.133e^-5	0.535	INTRON Fhos	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	8760421	3L_8760421_SNP [dm3] 3L_8767321_SNP [dm6]	G	A	1.133e^-5	0.535	INTRON Fhos	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	8755197	3L_8755197_SNP [dm3] 3L_8762097_SNP [dm6]	C	A	1.166e^-5	0.535	SYNONYMOUS_CODING Fhos	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	8756429	3L_8756429_SNP [dm3] 3L_8763329_SNP [dm6]	T	C	1.166e^-5	0.535	INTRON Fhos
3L	8756459	3L_8756459_SNP [dm3] 3L_8763359_SNP [dm6]	T	A	1.166e^-5	0.535	INTRON Fhos
3L	8756461	3L_8756461_SNP [dm3] 3L_8763361_SNP [dm6]	T	C	1.166e^-5	0.535	INTRON Fhos
3L	8756462	3L_8756462_SNP [dm3] 3L_8763362_SNP [dm6]	T	A	1.166e^-5	0.535	INTRON Fhos
3L	8756484	3L_8756484_SNP [dm3] 3L_8763384_SNP [dm6]	T	C	1.166e^-5	0.535	INTRON Fhos
3L	8756485	3L_8756485_SNP [dm3] 3L_8763385_SNP [dm6]	G	T	1.166e^-5	0.535	INTRON Fhos
3L	8756498	3L_8756498_SNP [dm3] 3L_8763398_SNP [dm6]	A	G	1.166e^-5	0.535	INTRON Fhos
3L	8756512	3L_8756512_SNP [dm3] 3L_8763412_SNP [dm6]	A	T	1.166e^-5	0.535	INTRON Fhos
3L	8758245	3L_8758245_SNP [dm3] 3L_8765145_SNP [dm6]	T	A	1.166e^-5	0.535	INTRON Fhos
3L	8758246	3L_8758246_SNP [dm3] 3L_8765146_SNP [dm6]	A	T	1.166e^-5	0.535	INTRON Fhos
3L	8758817	3L_8758817_SNP [dm3] 3L_8765717_SNP [dm6]	A	G	1.166e^-5	0.535	UPSTREAM Fhos INTRON Fhos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	8759284	3L_8759284_SNP [dm3] 3L_8766184_SNP [dm6]	T	G	1.166e^-5	0.535	UPSTREAM Fhos INTRON Fhos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	8759325	3L_8759325_SNP [dm3] 3L_8766225_SNP [dm6]	A	T	1.166e^-5	0.535	UPSTREAM Fhos INTRON Fhos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	8759326	3L_8759326_SNP [dm3] 3L_8766226_SNP [dm6]	G	A	1.166e^-5	0.535	UPSTREAM Fhos INTRON Fhos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	13286109	2L_13286109_SNP [dm3] 2L_13286109_SNP [dm6]	C	T	1.173e^-5	0.535	UPSTREAM Uvrag INTRON Drep-4 EXON CR44083	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	4487448	3L_4487448_SNP [dm3] 3L_4487448_SNP [dm6]	T	G	1.178e^-5	0.535	NON_SYNONYMOUS_CODING CG13722
2R	19109550	2R_19109550_SNP [dm3] 2R_23222027_SNP [dm6]	C	T	1.280e^-5	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16931983	2R_16931983_SNP [dm3] 2R_21044478_SNP [dm6]	C	A	1.306e^-5	0.565	INTERGENIC
X	11152348	X_11152348_SNP [dm3] X_11258315_SNP [dm6]	G	A	1.374e^-5	0.577	INTRON CG44422
2R	18022102	2R_18022102_SNP [dm3] 2R_22134597_SNP [dm6]	G	A	1.404e^-5	0.577	INTERGENIC
3R	21449047	3R_21449047_SNP [dm3] 3R_25623325_SNP [dm6]	G	A	1.430e^-5	0.577	SYNONYMOUS_CODING Npl4	TF binding site mE1_TFBS_sens
3L	8761259	3L_8761259_SNP [dm3] 3L_8768159_SNP [dm6]	A	G	1.472e^-5	0.581	INTRON Fhos
3R	7957332	3R_7957332_SNP [dm3] 3R_12131610_SNP [dm6]	T	A	1.736e^-5	0.662	DOWNSTREAM tRNA:K5:87BC INTERGENIC
2R	7113939	2R_7113939_SNP [dm3] 2R_11226434_SNP [dm6]	A	T	1.771e^-5	0.662	UTR_3_PRIME CG7737 DOWNSTREAM metro
3L	10115037	3L_10115037_SNP [dm3] 3L_10121937_SNP [dm6]	C	T	1.786e^-5	0.662	INTRON dpr6
3R	5128994	3R_5128994_SNP [dm3] 3R_9303272_SNP [dm6]	T	A	2.003e^-5	0.684	INTRON CG8861
3L	20652707	3L_20652707_SNP [dm3] 3L_20659607_SNP [dm6]	T	A	2.104e^-5	0.684	INTERGENIC	transposable element FlyBase
X	2877199	X_2877199_SNP [dm3] X_2983166_SNP [dm6]	T	C	2.133e^-5	0.684	INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	8756444	3L_8756444_MNP [dm3] 3L_8763344_MNP [dm6]	CAT	TCA	2.145e^-5	0.684	INTRON Fhos
3L	8756448	3L_8756448_SNP [dm3] 3L_8763348_SNP [dm6]	C	A	2.145e^-5	0.684	INTRON Fhos
3L	8756451	3L_8756451_SNP [dm3] 3L_8763351_SNP [dm6]	T	A	2.145e^-5	0.684	INTRON Fhos
3L	8756455	3L_8756455_SNP [dm3] 3L_8763355_SNP [dm6]	T	A	2.145e^-5	0.684	INTRON Fhos
3L	8756457	3L_8756457_SNP [dm3] 3L_8763357_SNP [dm6]	T	A	2.145e^-5	0.684	INTRON Fhos
3R	11995909	3R_11995909_SNP [dm3] 3R_16170187_SNP [dm6]	G	A	2.220e^-5	0.695	SYNONYMOUS_CODING CG6006	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3794161	3L_3794161_SNP [dm3] 3L_3794161_SNP [dm6]	T	A	2.411e^-5	0.742	INTRON CG32264
2R	18024827	2R_18024827_SNP [dm3] 2R_22137322_SNP [dm6]	T	C	2.470e^-5	0.748	UPSTREAM a INTRON a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3L	18916749	3L_18916749_SNP [dm3] 3L_18923649_SNP [dm6]	T	C	2.704e^-5	0.768	UTR_3_PRIME CG32204	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14712875	2L_14712875_SNP [dm3] 2L_14712875_SNP [dm6]	C	T	2.738e^-5	0.768	SYNONYMOUS_CODING CG15282 UPSTREAM CG34165
2R	12168670	2R_12168670_SNP [dm3] 2R_16281165_SNP [dm6]	T	C	2.744e^-5	0.768	SYNONYMOUS_CODING CG15705 DOWNSTREAM CG15704 & 1 other
2R	15967566	2R_15967566_SNP [dm3] 2R_20080061_SNP [dm6]	A	G	2.838e^-5	0.768	INTERGENIC
3L	1080045	3L_1080045_SNP [dm3] 3L_1080045_SNP [dm6]	C	G	2.876e^-5	0.768	INTRON bab1	TF binding site mE1_TFBS_chinmo
3L	1080134	3L_1080134_SNP [dm3] 3L_1080134_SNP [dm6]	T	C	2.876e^-5	0.768	INTRON bab1	TF binding site mE1_TFBS_chinmo
3L	18915960	3L_18915960_SNP [dm3] 3L_18922860_SNP [dm6]	G	T	2.876e^-5	0.768	UTR_3_PRIME CG32204 UPSTREAM CG3819
X	4842920	X_4842920_SNP [dm3] X_4948887_SNP [dm6]	A	T	2.876e^-5	0.768	INTRON Ptp4E	TF binding site mE1_TFBS_cad
2L	1371431	2L_1371431_SNP [dm3] 2L_1371431_SNP [dm6]	G	A	2.971e^-5	0.777	INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	397477	2R_397477_SNP [dm3] 2R_4509972_SNP [dm6]	C	T	2.995e^-5	0.777	INTERGENIC	transposable element FlyBase
2L	4325651	2L_4325651_SNP [dm3] 2L_4325651_SNP [dm6]	A	G	3.144e^-5	0.805	INTRON CG16857
2R	16931982	2R_16931982_SNP [dm3] 2R_21044477_SNP [dm6]	C	A	3.402e^-5	0.847	INTERGENIC
2L	1371353	2L_1371353_SNP [dm3] 2L_1371353_SNP [dm6]	T	G	3.438e^-5	0.847	INTERGENIC	TF binding site BDTNP1_TFBS_Med
2L	13128536	2L_13128536_SNP [dm3] 2L_13128536_SNP [dm6]	G	T	3.508e^-5	0.847	INTERGENIC
3L	3630320	3L_3630320_SNP [dm3] 3L_3630320_SNP [dm6]	T	C	3.577e^-5	0.847	INTRON dar1
3L	11693323	3L_11693323_SNP [dm3] 3L_11700223_SNP [dm6]	A	T	3.578e^-5	0.847	UTR_3_PRIME CG11658 UPSTREAM CG6053
2R	289852	2R_289852_SNP [dm3] 2R_4402347_SNP [dm6]	C	A	3.644e^-5	0.847	INTRON Gprk1
3L	15859526	3L_15859526_SNP [dm3] 3L_15866426_SNP [dm6]	T	A	3.674e^-5	0.847	INTRON pHCl
3L	3630330	3L_3630330_SNP [dm3] 3L_3630330_SNP [dm6]	G	A	3.715e^-5	0.847	INTRON dar1
X	17180521	X_17180521_DEL [dm3] X_17286488_DEL [dm6]	AA	A	3.958e^-5	0.847	UTR_3_PRIME Fim INTRON CG5445	TF binding site mE1_TFBS_HSA
2R	13363677	2R_13363677_SNP [dm3] 2R_17476172_SNP [dm6]	G	A	4.030e^-5	0.847	UTR_5_PRIME CG6520 UPSTREAM CG6520	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_Trl
2L	9140024	2L_9140024_SNP [dm3] 2L_9140024_SNP [dm6]	G	A	4.050e^-5	0.847	INTRON CG32982
2R	18427191	2R_18427191_SNP [dm3] 2R_22539686_SNP [dm6]	T	C	4.092e^-5	0.847	INTRON px
2R	19709329	2R_19709329_SNP [dm3] 2R_23821806_SNP [dm6]	G	A	4.218e^-5	0.847	INTRON CG5549	TF binding site mE1_TFBS_chinmo
2L	9447238	2L_9447238_SNP [dm3] 2L_9447238_SNP [dm6]	T	C	4.267e^-5	0.847	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
3L	10732027	3L_10732027_SNP [dm3] 3L_10738927_SNP [dm6]	T	C	4.333e^-5	0.847	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12486790	2L_12486790_SNP [dm3] 2L_12486790_SNP [dm6]	A	G	4.350e^-5	0.847	INTRON bun
2L	3011965	2L_3011965_SNP [dm3] 2L_3011965_SNP [dm6]	G	A	4.457e^-5	0.847	INTRON CG17265	TF binding site mE1_TFBS_inv
2L	13082911	2L_13082911_SNP [dm3] 2L_13082911_SNP [dm6]	A	G	4.494e^-5	0.847	INTERGENIC
2R	10732438	2R_10732438_SNP [dm3] 2R_14844933_SNP [dm6]	G	A	4.534e^-5	0.847	SYNONYMOUS_CODING NaPi-T	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1372594	2L_1372594_SNP [dm3] 2L_1372594_SNP [dm6]	C	T	4.546e^-5	0.847	INTERGENIC
3L	20652991	3L_20652991_SNP [dm3] 3L_20659891_SNP [dm6]	A	C	4.584e^-5	0.847	INTERGENIC
3L	7814988	3L_7814988_SNP [dm3] 3L_7821888_SNP [dm6]	T	C	4.625e^-5	0.847	INTRON Pdp1
3L	11866202	3L_11866202_SNP [dm3] 3L_11873102_SNP [dm6]	C	A	4.642e^-5	0.847	INTRON CG44837
3L	6133022	3L_6133022_SNP [dm3] 3L_6139922_SNP [dm6]	T	C	4.740e^-5	0.847	START_GAINED Cpr65Av UTR_5_PRIME Cpr65Av
3L	8756057	3L_8756057_SNP [dm3] 3L_8762957_SNP [dm6]	C	T	4.790e^-5	0.847	INTRON Fhos	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6954857	3L_6954857_SNP [dm3] 3L_6961757_SNP [dm6]	T	A	4.819e^-5	0.847	INTRON sgl
2R	16381467	2R_16381467_SNP [dm3] 2R_20493962_SNP [dm6]	C	T	4.827e^-5	0.847	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	5072426	3L_5072426_SNP [dm3] 3L_5072426_SNP [dm6]	C	T	4.894e^-5	0.847	INTRON Con
3L	5072432	3L_5072432_DEL [dm3] 3L_5072432_DEL [dm6]	CAACTATGCGATGCAGGATT...	C	4.894e^-5	0.847	INTRON Con
3L	5072501	3L_5072501_SNP [dm3] 3L_5072501_SNP [dm6]	T	A	4.894e^-5	0.847	INTRON Con
3L	5072509	3L_5072509_DEL [dm3] 3L_5072509_DEL [dm6]	TTTAAAATCTT...	T	4.894e^-5	0.847	INTRON Con
3L	5072545	3L_5072545_SNP [dm3] 3L_5072545_SNP [dm6]	A	T	4.894e^-5	0.847	INTRON Con
3L	5072552	3L_5072552_SNP [dm3] 3L_5072552_SNP [dm6]	A	G	4.894e^-5	0.847	INTRON Con
3L	11868872	3L_11868872_SNP [dm3] 3L_11875772_SNP [dm6]	A	G	4.905e^-5	0.847	INTRON CG44837
2R	20238838	2R_20238838_SNP [dm3] 2R_24351315_SNP [dm6]	C	T	4.996e^-5	0.847	DOWNSTREAM CR44811 INTRON bs & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	826899	3L_826899_SNP [dm3] 3L_826899_SNP [dm6]	T	C	5.005e^-5	0.847	DOWNSTREAM snoRNA:Me28S-C788b & 3 others INTRON CG13900 & 1 other
X	11151978	X_11151978_SNP [dm3] X_11257945_SNP [dm6]	A	G	5.095e^-5	0.847	INTRON CG44422	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	5072462	3L_5072462_SNP [dm3] 3L_5072462_SNP [dm6]	C	A	5.175e^-5	0.847	INTRON Con
3L	8752505	3L_8752505_SNP [dm3] 3L_8759405_SNP [dm6]	C	A	5.196e^-5	0.847	INTRON Fhos
3L	12278043	3L_12278043_SNP [dm3] 3L_12284943_SNP [dm6]	G	T	5.232e^-5	0.847	INTERGENIC
3R	6279106	3R_6279106_SNP [dm3] 3R_10453384_SNP [dm6]	T	G	5.290e^-5	0.847	INTERGENIC
2L	16926556	2L_16926556_SNP [dm3] 2L_16926556_SNP [dm6]	T	C	5.352e^-5	0.847	INTERGENIC
2L	1371386	2L_1371386_SNP [dm3] 2L_1371386_SNP [dm6]	C	A	5.498e^-5	0.847	INTERGENIC	TF binding site BDTNP1_TFBS_Med
2L	1870175	2L_1870175_SNP [dm3] 2L_1870175_SNP [dm6]	C	G	5.554e^-5	0.847	SYNONYMOUS_CODING CG7295 INTRON CG31663
3R	11005406	3R_11005406_SNP [dm3] 3R_15179684_SNP [dm6]	T	C	5.574e^-5	0.847	UPSTREAM Mf INTRON Gyc88E & 1 other
X	15175035	X_15175035_INS [dm3] X_15281002_INS [dm6]	T	TT	5.649e^-5	0.847	INTERGENIC
2L	16932921	2L_16932921_SNP [dm3] 2L_16932921_SNP [dm6]	A	T	5.819e^-5	0.847	INTERGENIC
2L	16932965	2L_16932965_SNP [dm3] 2L_16932965_SNP [dm6]	A	G	5.819e^-5	0.847	INTERGENIC
2R	8926300	2R_8926300_SNP [dm3] 2R_13038795_SNP [dm6]	G	T	5.946e^-5	0.847	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	19849193	2R_19849193_SNP [dm3] 2R_23961670_SNP [dm6]	T	C	5.947e^-5	0.847	SYNONYMOUS_CODING CG13566 DOWNSTREAM alpha-catenin-related
3L	6954809	3L_6954809_SNP [dm3] 3L_6961709_SNP [dm6]	G	A	5.975e^-5	0.847	INTRON sgl
3R	13895207	3R_13895207_SNP [dm3] 3R_18069485_SNP [dm6]	A	T	6.045e^-5	0.847	INTERGENIC
3R	13895211	3R_13895211_SNP [dm3] 3R_18069489_SNP [dm6]	C	A	6.045e^-5	0.847	INTERGENIC
3R	13895224	3R_13895224_SNP [dm3] 3R_18069502_SNP [dm6]	T	A	6.045e^-5	0.847	INTERGENIC
2L	9189773	2L_9189773_SNP [dm3] 2L_9189773_SNP [dm6]	A	G	6.093e^-5	0.847	INTRON tai
2L	2969058	2L_2969058_SNP [dm3] 2L_2969058_SNP [dm6]	G	A	6.118e^-5	0.847	SYNONYMOUS_CODING Ts DOWNSTREAM Rbp9 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	2008993	2L_2008993_SNP [dm3] 2L_2008993_SNP [dm6]	T	A	6.152e^-5	0.847	UTR_3_PRIME Nplp4 UPSTREAM tRNA:CR31943 & 2 others DOWNSTREAM Nplp4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	11151951	X_11151951_MNP [dm3] X_11257918_MNP [dm6]	ACCA	TGGT	6.252e^-5	0.847	INTRON CG44422	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	11151970	X_11151970_SNP [dm3] X_11257937_SNP [dm6]	C	T	6.252e^-5	0.847	INTRON CG44422	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	12358950	2L_12358950_SNP [dm3] 2L_12358950_SNP [dm6]	C	G	6.285e^-5	0.847	INTRON bru-2
3L	2882124	3L_2882124_SNP [dm3] 3L_2882124_SNP [dm6]	G	A	6.331e^-5	0.847	UPSTREAM CR44531 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	5072425	3L_5072425_SNP [dm3] 3L_5072425_SNP [dm6]	T	A	6.367e^-5	0.847	INTRON Con
3L	2104821	3L_2104821_SNP [dm3] 3L_2104821_SNP [dm6]	A	T	6.399e^-5	0.847	INTRON sls	TF binding site mE1_TFBS_chinmo
2R	18021778	2R_18021778_SNP [dm3] 2R_22134273_SNP [dm6]	A	G	6.452e^-5	0.847	INTERGENIC
2R	18021821	2R_18021821_SNP [dm3] 2R_22134316_SNP [dm6]	C	T	6.452e^-5	0.847	INTERGENIC
2R	18021822	2R_18021822_SNP [dm3] 2R_22134317_SNP [dm6]	A	G	6.452e^-5	0.847	INTERGENIC
2L	2309311	2L_2309311_SNP [dm3] 2L_2309311_SNP [dm6]	A	G	6.488e^-5	0.847	DOWNSTREAM CG16995 INTRON CG9967	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13294528	3L_13294528_SNP [dm3] 3L_13301428_SNP [dm6]	A	C	6.554e^-5	0.847	UPSTREAM SP & 1 other INTERGENIC
X	15548914	X_15548914_SNP [dm3] X_15654881_SNP [dm6]	A	T	6.556e^-5	0.847	INTERGENIC
2L	22558371	2L_22558371_SNP [dm3] 2L_22665639_SNP [dm6]	G	A	6.593e^-5	0.847	INTRON CG40006
2L	16926621	2L_16926621_SNP [dm3] 2L_16926621_SNP [dm6]	T	C	6.634e^-5	0.847	INTERGENIC
2R	19709267	2R_19709267_SNP [dm3] 2R_23821744_SNP [dm6]	G	A	6.693e^-5	0.847	INTRON CG5549	TF binding site mE1_TFBS_chinmo
2L	13976987	2L_13976987_SNP [dm3] 2L_13976987_SNP [dm6]	G	A	6.714e^-5	0.847	UPSTREAM NimC1 & 1 other INTERGENIC
2R	19709324	2R_19709324_SNP [dm3] 2R_23821801_SNP [dm6]	T	C	6.763e^-5	0.847	INTRON CG5549	TF binding site mE1_TFBS_chinmo
3R	13895198	3R_13895198_SNP [dm3] 3R_18069476_SNP [dm6]	T	G	6.841e^-5	0.851	INTERGENIC
2R	15673400	2R_15673400_SNP [dm3] 2R_19785895_SNP [dm6]	G	T	6.934e^-5	0.857	EXON CR45231	regulatory region REDfly_CRMs
3R	6279118	3R_6279118_SNP [dm3] 3R_10453396_SNP [dm6]	G	A	7.018e^-5	0.861	INTERGENIC
3L	13156450	3L_13156450_SNP [dm3] 3L_13163350_SNP [dm6]	T	C	7.119e^-5	0.868	INTERGENIC
X	12949883	X_12949883_SNP [dm3] X_13055850_SNP [dm6]	G	C	7.218e^-5	0.868	UPSTREAM CG12715 INTRON rad
X	12949891	X_12949891_SNP [dm3] X_13055858_SNP [dm6]	C	T	7.218e^-5	0.868	UPSTREAM CG12715 INTRON rad
3L	13395571	3L_13395571_SNP [dm3] 3L_13402471_SNP [dm6]	A	T	7.325e^-5	0.875	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	19156374	3L_19156374_SNP [dm3] 3L_19163274_SNP [dm6]	T	A	7.453e^-5	0.875	INTRON fz2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	19156441	3L_19156441_SNP [dm3] 3L_19163341_SNP [dm6]	A	G	7.453e^-5	0.875	INTRON fz2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	20652885	3L_20652885_DEL [dm3] 3L_20659785_DEL [dm6]	TGT	T	7.540e^-5	0.875	INTERGENIC	transposable element FlyBase
2L	7675712	2L_7675712_SNP [dm3] 2L_7675712_SNP [dm6]	C	T	7.563e^-5	0.875	UPSTREAM Slob INTRON Myo28B1
X	11152161	X_11152161_DEL [dm3] X_11258128_DEL [dm6]	CGCTGAGTTC	C	7.587e^-5	0.875	INTRON CG44422
2L	13963497	2L_13963497_SNP [dm3] 2L_13963497_SNP [dm6]	A	G	7.610e^-5	0.875	UPSTREAM NimB1 DOWNSTREAM NimA INTERGENIC
3L	4659265	3L_4659265_SNP [dm3] 3L_4659265_SNP [dm6]	C	A	7.722e^-5	0.882	INTRON axo
3R	13895196	3R_13895196_SNP [dm3] 3R_18069474_SNP [dm6]	T	A	7.784e^-5	0.884	INTERGENIC
3L	4485607	3L_4485607_SNP [dm3] 3L_4485607_SNP [dm6]	T	G	7.893e^-5	0.884	SYNONYMOUS_CODING CG13722	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4659308	3L_4659308_SNP [dm3] 3L_4659308_SNP [dm6]	T	A	7.975e^-5	0.884	INTRON axo
X	15175017	X_15175017_SNP [dm3] X_15280984_SNP [dm6]	T	G	8.009e^-5	0.884	INTERGENIC
X	15175019	X_15175019_SNP [dm3] X_15280986_SNP [dm6]	T	A	8.009e^-5	0.884	INTERGENIC
2L	1370921	2L_1370921_SNP [dm3] 2L_1370921_SNP [dm6]	T	C	8.084e^-5	0.884	INTERGENIC
X	11152109	X_11152109_SNP [dm3] X_11258076_SNP [dm6]	A	G	8.086e^-5	0.884	INTRON CG44422
2L	6102017	2L_6102017_DEL [dm3] 2L_6102017_DEL [dm6]	TCGT	T	8.124e^-5	0.884	INTRON stai
3L	3795718	3L_3795718_SNP [dm3] 3L_3795718_SNP [dm6]	C	T	8.330e^-5	0.892	UPSTREAM CG32264 INTRON CG32264
3L	8760685	3L_8760685_SNP [dm3] 3L_8767585_SNP [dm6]	C	T	8.448e^-5	0.892	INTRON Fhos
3L	8760686	3L_8760686_SNP [dm3] 3L_8767586_SNP [dm6]	C	T	8.448e^-5	0.892	INTRON Fhos
3L	8760691	3L_8760691_SNP [dm3] 3L_8767591_SNP [dm6]	C	T	8.448e^-5	0.892	INTRON Fhos
2L	13030695	2L_13030695_SNP [dm3] 2L_13030695_SNP [dm6]	A	G	8.481e^-5	0.892	SYNONYMOUS_CODING CG9932	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4486087	3L_4486087_SNP [dm3] 3L_4486087_SNP [dm6]	G	A	8.512e^-5	0.892	SYNONYMOUS_CODING CG13722	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	15626113	3L_15626113_SNP [dm3] 3L_15633013_SNP [dm6]	C	G	8.588e^-5	0.892	UPSTREAM comm3 INTRON comm3
3L	15626114	3L_15626114_SNP [dm3] 3L_15633014_SNP [dm6]	C	T	8.588e^-5	0.892	UPSTREAM comm3 INTRON comm3
3L	8757751	3L_8757751_SNP [dm3] 3L_8764651_SNP [dm6]	C	A	8.649e^-5	0.893	INTRON Fhos
3L	8760263	3L_8760263_DEL [dm3] 3L_8767163_DEL [dm6]	AGCCCAAA	A	8.835e^-5	0.895	INTRON Fhos	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	16932867	2L_16932867_SNP [dm3] 2L_16932867_SNP [dm6]	G	A	8.920e^-5	0.895	INTERGENIC
2L	16932913	2L_16932913_SNP [dm3] 2L_16932913_SNP [dm6]	G	A	8.920e^-5	0.895	INTERGENIC
X	5439887	X_5439887_SNP [dm3] X_5545854_SNP [dm6]	G	A	8.927e^-5	0.895	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2712381	2L_2712381_SNP [dm3] 2L_2712381_SNP [dm6]	A	T	8.980e^-5	0.895	INTRON CG31690	TF binding site mE1_TFBS_chinmo
2R	9237250	2R_9237250_DEL [dm3] 2R_13349745_DEL [dm6]	TT	T	9.080e^-5	0.895	INTRON CR44206	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19264265	X_19264265_SNP [dm3] X_19370232_SNP [dm6]	A	C	9.144e^-5	0.895	INTRON kek5
2R	9187968	2R_9187968_SNP [dm3] 2R_13300463_SNP [dm6]	G	A	9.145e^-5	0.895	SYNONYMOUS_CODING CG17047
X	11152008	X_11152008_SNP [dm3] X_11257975_SNP [dm6]	A	T	9.168e^-5	0.895	INTRON CG44422	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	12358953	2L_12358953_SNP [dm3] 2L_12358953_SNP [dm6]	G	A	9.179e^-5	0.895	INTRON bru-2
X	17317566	X_17317566_SNP [dm3] X_17423533_SNP [dm6]	T	C	9.213e^-5	0.895	UPSTREAM CG5613 INTRON CG12994	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16303151	2R_16303151_SNP [dm3] 2R_20415646_SNP [dm6]	A	T	9.505e^-5	0.903	INTERGENIC
3L	8755476	3L_8755476_SNP [dm3] 3L_8762376_SNP [dm6]	C	G	9.766e^-5	0.903	NON_SYNONYMOUS_CODING Fhos	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	8756430	3L_8756430_SNP [dm3] 3L_8763330_SNP [dm6]	T	A	9.766e^-5	0.903	INTRON Fhos
3L	5979467	3L_5979467_SNP [dm3] 3L_5986367_SNP [dm6]	T	C	9.881e^-5	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18369069	2R_18369069_SNP [dm3] 2R_22481564_SNP [dm6]	A	C	9.976e^-5	0.903	INTRON CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6279082	3R_6279082_SNP [dm3] 3R_10453360_SNP [dm6]	A	G	1.000e^-4	0.903	INTERGENIC
3R	6279105	3R_6279105_SNP [dm3] 3R_10453383_SNP [dm6]	A	G	1.000e^-4	0.903	INTERGENIC
2L	9363741	2L_9363741_SNP [dm3] 2L_9363741_SNP [dm6]	G	A	1.036e^-4	0.903	UPSTREAM CR43404 INTERGENIC
3R	10378687	3R_10378687_SNP [dm3] 3R_14552965_SNP [dm6]	T	C	1.037e^-4	0.903	INTRON Pde6
X	15175032	X_15175032_SNP [dm3] X_15280999_SNP [dm6]	T	C	1.038e^-4	0.903	INTERGENIC
3R	24631087	3R_24631087_SNP [dm3] 3R_28805365_SNP [dm6]	T	G	1.047e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2740072	3L_2740072_SNP [dm3] 3L_2740072_SNP [dm6]	G	C	1.050e^-4	0.903	SYNONYMOUS_CODING Acp62F INTRON Mrtf
2R	20451647	2R_20451647_SNP [dm3] 2R_24564124_SNP [dm6]	T	C	1.067e^-4	0.903	NON_SYNONYMOUS_CODING CG11414	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2715396	3L_2715396_SNP [dm3] 3L_2715396_SNP [dm6]	G	T	1.071e^-4	0.903	INTERGENIC
3L	2715397	3L_2715397_SNP [dm3] 3L_2715397_SNP [dm6]	G	T	1.071e^-4	0.903	INTERGENIC
3R	11875998	3R_11875998_SNP [dm3] 3R_16050276_SNP [dm6]	T	A	1.076e^-4	0.903	SYNONYMOUS_CODING CG5013 UPSTREAM ird5 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	1509814	X_1509814_DEL [dm3] X_1615781_DEL [dm6]	TTTCTTC	T	1.079e^-4	0.903	INTRON br & 1 other
2R	15146148	2R_15146148_SNP [dm3] 2R_19258643_SNP [dm6]	T	C	1.082e^-4	0.903	DOWNSTREAM CR44432 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc
3L	11643086	3L_11643086_SNP [dm3] 3L_11649986_SNP [dm6]	T	G	1.085e^-4	0.903	UTR_3_PRIME CG7339 DOWNSTREAM CG32085 & 1 other
3R	14812698	3R_14812698_SNP [dm3] 3R_18986976_SNP [dm6]	T	C	1.092e^-4	0.903	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	19705782	2R_19705782_SNP [dm3] 2R_23818259_SNP [dm6]	G	C	1.095e^-4	0.903	UTR_5_PRIME CG4797
2L	802026	2L_802026_SNP [dm3] 2L_802026_SNP [dm6]	T	G	1.095e^-4	0.903	INTERGENIC
2R	13801109	2R_13801109_SNP [dm3] 2R_17913604_SNP [dm6]	T	C	1.098e^-4	0.903	INTRON Elk
3L	20652636	3L_20652636_SNP [dm3] 3L_20659536_SNP [dm6]	G	T	1.099e^-4	0.903	INTERGENIC	transposable element FlyBase
3L	20652832	3L_20652832_SNP [dm3] 3L_20659732_SNP [dm6]	G	T	1.099e^-4	0.903	INTERGENIC	transposable element FlyBase
3L	20652989	3L_20652989_SNP [dm3] 3L_20659889_SNP [dm6]	C	A	1.099e^-4	0.903	INTERGENIC
3L	20656325	3L_20656325_SNP [dm3] 3L_20663225_SNP [dm6]	A	T	1.099e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3L	5080411	3L_5080411_SNP [dm3] 3L_5080411_SNP [dm6]	T	A	1.099e^-4	0.903	INTERGENIC
2L	2553311	2L_2553311_SNP [dm3] 2L_2553311_SNP [dm6]	G	T	1.119e^-4	0.903	UPSTREAM CG3515 INTERGENIC
2R	7113898	2R_7113898_SNP [dm3] 2R_11226393_SNP [dm6]	A	C	1.127e^-4	0.903	UTR_3_PRIME CG7737 DOWNSTREAM metro	TF binding site mE1_TFBS_cad
3L	15705258	3L_15705258_SNP [dm3] 3L_15712158_SNP [dm6]	A	G	1.145e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
X	11151990	X_11151990_DEL [dm3] X_11257957_DEL [dm6]	TTTCATATCTAGCTAT...	T	1.152e^-4	0.903	INTRON CG44422	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4659284	3L_4659284_SNP [dm3] 3L_4659284_SNP [dm6]	A	T	1.168e^-4	0.903	INTRON axo
3L	4659285	3L_4659285_DEL [dm3] 3L_4659285_DEL [dm6]	ACT	A	1.168e^-4	0.903	INTRON axo
2R	16182157	2R_16182157_SNP [dm3] 2R_20294652_SNP [dm6]	G	C	1.181e^-4	0.903	EXON CR44639
2R	16182170	2R_16182170_SNP [dm3] 2R_20294665_SNP [dm6]	A	T	1.181e^-4	0.903	EXON CR44639
2L	7029998	2L_7029998_SNP [dm3] 2L_7029998_SNP [dm6]	C	T	1.192e^-4	0.903	DOWNSTREAM Rab30 INTERGENIC
3L	20653562	3L_20653562_SNP [dm3] 3L_20660462_SNP [dm6]	A	G	1.197e^-4	0.903	INTERGENIC
3R	23430682	3R_23430682_SNP [dm3] 3R_27604960_SNP [dm6]	T	A	1.205e^-4	0.903	INTRON dsd	TF binding site mE1_TFBS_cad
X	16954241	X_16954241_SNP [dm3] X_17060208_SNP [dm6]	T	C	1.229e^-4	0.903	INTRON CG45002
2L	9122957	2L_9122957_SNP [dm3] 2L_9122957_SNP [dm6]	G	A	1.232e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5920113	2L_5920113_SNP [dm3] 2L_5920113_SNP [dm6]	C	A	1.243e^-4	0.903	NON_SYNONYMOUS_CODING bchs	TF binding site mE1_TFBS_cad
2L	5920125	2L_5920125_SNP [dm3] 2L_5920125_SNP [dm6]	A	C	1.243e^-4	0.903	SYNONYMOUS_CODING bchs	TF binding site mE1_TFBS_cad
3L	8759399	3L_8759399_SNP [dm3] 3L_8766299_SNP [dm6]	C	A	1.254e^-4	0.903	UPSTREAM Fhos INTRON Fhos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	15105633	X_15105633_SNP [dm3] X_15211600_SNP [dm6]	A	G	1.282e^-4	0.903	DOWNSTREAM CG5662 INTERGENIC
3L	13272545	3L_13272545_SNP [dm3] 3L_13279445_SNP [dm6]	C	G	1.284e^-4	0.903	UTR_3_PRIME caps UPSTREAM tRNA:CR32123:Psi
2R	291420	2R_291420_SNP [dm3] 2R_4403915_SNP [dm6]	A	T	1.286e^-4	0.903	INTRON Gprk1
2R	495731	2R_495731_SNP [dm3] 2R_4608226_SNP [dm6]	T	A	1.286e^-4	0.903	INTRON p120ctn
3L	4373539	3L_4373539_SNP [dm3] 3L_4373539_SNP [dm6]	A	G	1.289e^-4	0.903	INTRON DopEcR
3L	6954714	3L_6954714_SNP [dm3] 3L_6961614_SNP [dm6]	T	A	1.291e^-4	0.903	INTRON sgl
2R	5990304	2R_5990304_SNP [dm3] 2R_10102799_SNP [dm6]	G	T	1.293e^-4	0.903	UPSTREAM 14-3-3zeta INTRON 14-3-3zeta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	18401883	X_18401883_SNP [dm3] X_18507850_SNP [dm6]	G	T	1.307e^-4	0.903	SYNONYMOUS_CODING Ggt-1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	11152173	X_11152173_SNP [dm3] X_11258140_SNP [dm6]	C	G	1.315e^-4	0.903	INTRON CG44422
2R	18025083	2R_18025083_SNP [dm3] 2R_22137578_SNP [dm6]	T	C	1.321e^-4	0.903	START_GAINED a UTR_5_PRIME a INTRON a	TF binding site mE1_TFBS_run mE1_TFBS_Trl
3L	8758436	3L_8758436_SNP [dm3] 3L_8765336_SNP [dm6]	G	A	1.326e^-4	0.903	INTRON Fhos	TF binding site mE1_TFBS_Trl
2L	15635067	2L_15635067_SNP [dm3] 2L_15635067_SNP [dm6]	A	G	1.331e^-4	0.903	DOWNSTREAM CG18480 INTERGENIC
2R	18025110	2R_18025110_SNP [dm3] 2R_22137605_SNP [dm6]	A	G	1.336e^-4	0.903	START_GAINED a UTR_5_PRIME a INTRON a
3L	20653002	3L_20653002_SNP [dm3] 3L_20659902_SNP [dm6]	T	G	1.336e^-4	0.903	INTERGENIC
X	4730468	X_4730468_SNP [dm3] X_4836435_SNP [dm6]	A	G	1.346e^-4	0.903	INTERGENIC
X	4730485	X_4730485_SNP [dm3] X_4836452_SNP [dm6]	T	C	1.346e^-4	0.903	INTERGENIC
2L	13284730	2L_13284730_SNP [dm3] 2L_13284730_SNP [dm6]	G	T	1.348e^-4	0.903	SYNONYMOUS_CODING Drep-4 UPSTREAM CR44083 DOWNSTREAM CG44085	TF binding site mE1_TFBS_cad
X	18473308	X_18473308_SNP [dm3] X_18579275_SNP [dm6]	A	C	1.350e^-4	0.903	INTERGENIC
3R	5140986	3R_5140986_SNP [dm3] 3R_9315264_SNP [dm6]	T	A	1.364e^-4	0.903	INTRON CG8861
3L	4487401	3L_4487401_SNP [dm3] 3L_4487401_SNP [dm6]	G	T	1.377e^-4	0.903	SYNONYMOUS_CODING CG13722
3R	22563163	3R_22563163_SNP [dm3] 3R_26737441_SNP [dm6]	T	C	1.383e^-4	0.903	UPSTREAM CG14247 INTERGENIC
X	11799589	X_11799589_SNP [dm3] X_11905556_SNP [dm6]	C	T	1.393e^-4	0.903	UPSTREAM Upf1 DOWNSTREAM CG43156 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
X	11799839	X_11799839_SNP [dm3] X_11905806_SNP [dm6]	C	T	1.393e^-4	0.903	UPSTREAM Upf1 DOWNSTREAM CG43156 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	8752145	3L_8752145_SNP [dm3] 3L_8759045_SNP [dm6]	G	T	1.396e^-4	0.903	INTRON Fhos
3L	8753666	3L_8753666_SNP [dm3] 3L_8760566_SNP [dm6]	T	A	1.396e^-4	0.903	NON_SYNONYMOUS_CODING Fhos UPSTREAM Fhos
3L	8753676	3L_8753676_SNP [dm3] 3L_8760576_SNP [dm6]	C	T	1.396e^-4	0.903	SYNONYMOUS_CODING Fhos UPSTREAM Fhos
3L	8753706	3L_8753706_SNP [dm3] 3L_8760606_SNP [dm6]	A	G	1.396e^-4	0.903	SYNONYMOUS_CODING Fhos UPSTREAM Fhos
3L	8753763	3L_8753763_SNP [dm3] 3L_8760663_SNP [dm6]	G	A	1.396e^-4	0.903	SYNONYMOUS_CODING Fhos UPSTREAM Fhos
3L	8756392	3L_8756392_SNP [dm3] 3L_8763292_SNP [dm6]	T	A	1.396e^-4	0.903	INTRON Fhos
3L	8756654	3L_8756654_SNP [dm3] 3L_8763554_SNP [dm6]	C	G	1.396e^-4	0.903	INTRON Fhos
3L	8757707	3L_8757707_SNP [dm3] 3L_8764607_SNP [dm6]	A	T	1.396e^-4	0.903	INTRON Fhos
3L	8757772	3L_8757772_SNP [dm3] 3L_8764672_SNP [dm6]	C	T	1.396e^-4	0.903	INTRON Fhos
3L	8758096	3L_8758096_SNP [dm3] 3L_8764996_SNP [dm6]	T	A	1.396e^-4	0.903	INTRON Fhos
3L	8758099	3L_8758099_SNP [dm3] 3L_8764999_SNP [dm6]	G	T	1.396e^-4	0.903	INTRON Fhos
3L	8759291	3L_8759291_SNP [dm3] 3L_8766191_SNP [dm6]	A	T	1.396e^-4	0.903	UPSTREAM Fhos INTRON Fhos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	8759310	3L_8759310_SNP [dm3] 3L_8766210_SNP [dm6]	A	C	1.396e^-4	0.903	UPSTREAM Fhos INTRON Fhos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	19546076	2R_19546076_SNP [dm3] 2R_23658553_SNP [dm6]	A	C	1.398e^-4	0.903	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	9237096	2L_9237096_SNP [dm3] 2L_9237096_SNP [dm6]	C	T	1.400e^-4	0.903	UPSTREAM tRNA:CR31885 INTRON tai
3R	24624713	3R_24624713_SNP [dm3] 3R_28798991_SNP [dm6]	G	T	1.408e^-4	0.903	INTERGENIC
X	5358964	X_5358964_SNP [dm3] X_5464931_SNP [dm6]	A	C	1.414e^-4	0.903	UTR_5_PRIME SPR INTRON SPR
2L	15262088	2L_15262088_SNP [dm3] 2L_15262088_SNP [dm6]	G	A	1.417e^-4	0.903	SYNONYMOUS_CODING yuri
2L	2010863	2L_2010863_SNP [dm3] 2L_2010863_SNP [dm6]	T	C	1.432e^-4	0.903	UPSTREAM CG4238 & 1 other DOWNSTREAM tRNA:CR31940 INTRON CG4238
3L	5072420	3L_5072420_SNP [dm3] 3L_5072420_SNP [dm6]	A	G	1.450e^-4	0.903	INTRON Con
3L	5072538	3L_5072538_SNP [dm3] 3L_5072538_SNP [dm6]	T	A	1.450e^-4	0.903	INTRON Con
3R	22877846	3R_22877846_SNP [dm3] 3R_27052124_SNP [dm6]	A	G	1.458e^-4	0.903	INTRON RYa-R
3R	7956973	3R_7956973_INS [dm3] 3R_12131251_INS [dm6]	T	TGT	1.460e^-4	0.903	UPSTREAM tRNA:K5:87BC INTERGENIC
3L	7354478	3L_7354478_SNP [dm3] 3L_7361378_SNP [dm6]	A	C	1.461e^-4	0.903	INTRON Sec63	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18395592	2R_18395592_SNP [dm3] 2R_22508087_SNP [dm6]	T	C	1.465e^-4	0.903	INTRON px	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16756950	2R_16756950_SNP [dm3] 2R_20869445_SNP [dm6]	T	A	1.467e^-4	0.903	UPSTREAM IM4 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	5679751	2R_5679751_SNP [dm3] 2R_9792246_SNP [dm6]	G	A	1.468e^-4	0.903	DOWNSTREAM CR44208 INTRON CG1688
2R	5679762	2R_5679762_SNP [dm3] 2R_9792257_SNP [dm6]	G	A	1.468e^-4	0.903	DOWNSTREAM CR44208 INTRON CG1688
2R	5679764	2R_5679764_SNP [dm3] 2R_9792259_SNP [dm6]	G	A	1.468e^-4	0.903	DOWNSTREAM CR44208 INTRON CG1688
3L	10224376	3L_10224376_DEL [dm3] 3L_10231276_DEL [dm6]	TG	T	1.474e^-4	0.903	INTERGENIC
2L	3154506	2L_3154506_SNP [dm3] 2L_3154506_SNP [dm6]	C	A	1.483e^-4	0.903	INTRON Mad
3L	15859506	3L_15859506_SNP [dm3] 3L_15866406_SNP [dm6]	T	C	1.494e^-4	0.903	INTRON pHCl
3R	13663144	3R_13663144_SNP [dm3] 3R_17837422_SNP [dm6]	T	C	1.529e^-4	0.903	INTRON tinc
X	20110390	X_20110390_DEL [dm3] X_20239316_DEL [dm6]	ATT	A	1.535e^-4	0.903	UPSTREAM obst-A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	20110397	X_20110397_SNP [dm3] X_20239323_SNP [dm6]	G	A	1.535e^-4	0.903	UPSTREAM obst-A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	20110401	X_20110401_SNP [dm3] X_20239327_SNP [dm6]	A	T	1.535e^-4	0.903	UPSTREAM obst-A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	20110496	X_20110496_SNP [dm3] X_20239422_SNP [dm6]	T	C	1.535e^-4	0.903	UPSTREAM obst-A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	3207731	3L_3207731_SNP [dm3] 3L_3207731_SNP [dm6]	T	C	1.535e^-4	0.903	SYNONYMOUS_CODING CG32269 UTR_3_PRIME CG32270 INTRON gry	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	11798535	X_11798535_SNP [dm3] X_11904502_SNP [dm6]	G	A	1.543e^-4	0.903	SYNONYMOUS_CODING Upf1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
2R	12373336	2R_12373336_SNP [dm3] 2R_16485831_SNP [dm6]	T	A	1.547e^-4	0.903	UPSTREAM CG15712 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	16935685	2L_16935685_SNP [dm3] 2L_16935685_SNP [dm6]	T	C	1.587e^-4	0.903	INTERGENIC
2R	4493629	2R_4493629_SNP [dm3] 2R_8606124_SNP [dm6]	T	A	1.610e^-4	0.903	INTRON rgr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	18451827	3L_18451827_SNP [dm3] 3L_18458727_SNP [dm6]	C	T	1.614e^-4	0.903	DOWNSTREAM CG32196 INTERGENIC
3L	4486090	3L_4486090_SNP [dm3] 3L_4486090_SNP [dm6]	T	G	1.618e^-4	0.903	SYNONYMOUS_CODING CG13722	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	11799460	X_11799460_SNP [dm3] X_11905427_SNP [dm6]	C	G	1.627e^-4	0.903	UPSTREAM Upf1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	12462739	2R_12462739_SNP [dm3] 2R_16575234_SNP [dm6]	C	T	1.629e^-4	0.903	SYNONYMOUS_CODING CG8317	TF binding site mE1_TFBS_inv
3R	5994151	3R_5994151_SNP [dm3] 3R_10168429_SNP [dm6]	A	G	1.630e^-4	0.903	INTRON Best1	TF binding site mE1_TFBS_zfh1
3R	1972430	3R_1972430_SNP [dm3] 3R_6146708_SNP [dm6]	A	G	1.632e^-4	0.903	INTERGENIC
2R	12465830	2R_12465830_SNP [dm3] 2R_16578325_SNP [dm6]	G	A	1.647e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_z
X	16760693	X_16760693_INS [dm3] X_16866660_INS [dm6]	T	TTCCTTT	1.647e^-4	0.903	INTRON CG13003
3L	3906588	3L_3906588_SNP [dm3] 3L_3906588_SNP [dm6]	C	T	1.650e^-4	0.903	SYNONYMOUS_CODING ida	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6954899	3L_6954899_SNP [dm3] 3L_6961799_SNP [dm6]	C	G	1.657e^-4	0.903	INTRON sgl
3R	13728044	3R_13728044_DEL [dm3] 3R_17902322_DEL [dm6]	AG	A	1.671e^-4	0.903	INTRON Rim
2L	7183979	2L_7183979_SNP [dm3] 2L_7183979_SNP [dm6]	C	T	1.679e^-4	0.903	SYNONYMOUS_CODING CG4495	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3630252	3L_3630252_SNP [dm3] 3L_3630252_SNP [dm6]	T	G	1.690e^-4	0.903	INTRON dar1
2L	723585	2L_723585_DEL [dm3] 2L_723585_DEL [dm6]	CC	C	1.693e^-4	0.903	INTERGENIC
3L	8756176	3L_8756176_SNP [dm3] 3L_8763076_SNP [dm6]	G	A	1.693e^-4	0.903	NON_SYNONYMOUS_CODING Fhos	TF binding site mE1_TFBS_cad
2L	19567026	2L_19567026_SNP [dm3] 2L_19567026_SNP [dm6]	G	C	1.699e^-4	0.903	SYNONYMOUS_CODING CG13077 DOWNSTREAM spi
2L	19567029	2L_19567029_SNP [dm3] 2L_19567029_SNP [dm6]	A	C	1.699e^-4	0.903	SYNONYMOUS_CODING CG13077 DOWNSTREAM spi
3R	24869249	3R_24869249_SNP [dm3] 3R_29043527_SNP [dm6]	G	C	1.699e^-4	0.903	INTRON Pkc98E
3L	2505582	3L_2505582_SNP [dm3] 3L_2505582_SNP [dm6]	T	G	1.704e^-4	0.903	UTR_3_PRIME Spn DOWNSTREAM Spn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20107921	2R_20107921_SNP [dm3] 2R_24220398_SNP [dm6]	C	T	1.711e^-4	0.903	INTRON CG30419
3L	3630338	3L_3630338_SNP [dm3] 3L_3630338_SNP [dm6]	C	T	1.713e^-4	0.903	INTRON dar1
X	13678781	X_13678781_SNP [dm3] X_13784748_SNP [dm6]	G	C	1.714e^-4	0.903	INTRON inaE	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	16195063	3L_16195063_SNP [dm3] 3L_16201963_SNP [dm6]	C	T	1.717e^-4	0.903	SYNONYMOUS_CODING CG33690
3L	16195064	3L_16195064_INS [dm3] 3L_16201964_INS [dm6]	A	AATGCCAATATATAATTATG...	1.717e^-4	0.903
X	15175062	X_15175062_SNP [dm3] X_15281029_SNP [dm6]	T	A	1.718e^-4	0.903	INTERGENIC
X	11799518	X_11799518_SNP [dm3] X_11905485_SNP [dm6]	C	A	1.739e^-4	0.903	UPSTREAM Upf1 DOWNSTREAM CG43156 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	15317301	2R_15317301_SNP [dm3] 2R_19429796_SNP [dm6]	G	T	1.756e^-4	0.903	DOWNSTREAM CalpA & 1 other INTRON CalpA
3L	2187166	3L_2187166_SNP [dm3] 3L_2187166_SNP [dm6]	A	G	1.756e^-4	0.903	SYNONYMOUS_CODING CG13810	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13466917	3L_13466917_SNP [dm3] 3L_13473817_SNP [dm6]	G	T	1.757e^-4	0.903	INTRON CG10089
3L	13395572	3L_13395572_SNP [dm3] 3L_13402472_SNP [dm6]	C	T	1.769e^-4	0.903	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	7357470	2L_7357470_SNP [dm3] 2L_7357470_SNP [dm6]	A	T	1.772e^-4	0.903	INTERGENIC
3R	14907619	3R_14907619_SNP [dm3] 3R_19081897_SNP [dm6]	G	A	1.774e^-4	0.903	INTRON cdi
3L	5088343	3L_5088343_SNP [dm3] 3L_5088343_SNP [dm6]	A	T	1.777e^-4	0.903	INTERGENIC
3L	1424484	3L_1424484_SNP [dm3] 3L_1424484_SNP [dm6]	T	A	1.781e^-4	0.903	INTRON Ptp61F
3R	13895209	3R_13895209_SNP [dm3] 3R_18069487_SNP [dm6]	A	G	1.786e^-4	0.903	INTERGENIC
3R	13895218	3R_13895218_SNP [dm3] 3R_18069496_SNP [dm6]	A	T	1.786e^-4	0.903	INTERGENIC
3R	25306319	3R_25306319_SNP [dm3] 3R_29480597_SNP [dm6]	C	T	1.795e^-4	0.903	INTRON Ptp99A	TF binding site mE1_TFBS_cad
2L	13414855	2L_13414855_SNP [dm3] 2L_13414855_SNP [dm6]	A	G	1.796e^-4	0.903	UPSTREAM CG42784 & 2 others INTERGENIC
2L	13414857	2L_13414857_SNP [dm3] 2L_13414857_SNP [dm6]	T	A	1.796e^-4	0.903	UPSTREAM CG42784 & 2 others INTERGENIC
2L	13414867	2L_13414867_SNP [dm3] 2L_13414867_SNP [dm6]	G	A	1.796e^-4	0.903	UPSTREAM CG42784 & 2 others INTERGENIC
2L	13414932	2L_13414932_SNP [dm3] 2L_13414932_SNP [dm6]	A	G	1.796e^-4	0.903	UPSTREAM CG42784 & 2 others INTERGENIC
2L	13414935	2L_13414935_SNP [dm3] 2L_13414935_SNP [dm6]	T	A	1.796e^-4	0.903	UPSTREAM CG42784 & 2 others INTERGENIC
3L	2422018	3L_2422018_SNP [dm3] 3L_2422018_SNP [dm6]	G	T	1.799e^-4	0.903	INTRON CG45186	TF binding site mE1_TFBS_inv
2L	12865256	2L_12865256_SNP [dm3] 2L_12865256_SNP [dm6]	A	C	1.815e^-4	0.903	INTERGENIC
X	11797731	X_11797731_SNP [dm3] X_11903698_SNP [dm6]	A	G	1.825e^-4	0.903	SYNONYMOUS_CODING Upf1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	4487336	3L_4487336_SNP [dm3] 3L_4487336_SNP [dm6]	A	G	1.831e^-4	0.903	NON_SYNONYMOUS_CODING CG13722
3L	4164454	3L_4164454_SNP [dm3] 3L_4164454_SNP [dm6]	T	G	1.832e^-4	0.903	SYNONYMOUS_CODING mas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9895079	2R_9895079_DEL [dm3] 2R_14007574_DEL [dm6]	CGAGTGAG	C	1.839e^-4	0.903	INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
2L	12455478	2L_12455478_SNP [dm3] 2L_12455478_SNP [dm6]	A	C	1.873e^-4	0.903	DOWNSTREAM bun & 1 other INTERGENIC
X	15175046	X_15175046_SNP [dm3] X_15281013_SNP [dm6]	C	T	1.874e^-4	0.903	INTERGENIC
2L	2018360	2L_2018360_SNP [dm3] 2L_2018360_SNP [dm6]	A	G	1.885e^-4	0.903	INTRON CG4238
X	11152362	X_11152362_INS [dm3] X_11258329_INS [dm6]	C	CCGGACTCC	1.885e^-4	0.903	INTRON CG44422
3L	2714406	3L_2714406_SNP [dm3] 3L_2714406_SNP [dm6]	T	G	1.885e^-4	0.903	INTERGENIC
2L	12483626	2L_12483626_SNP [dm3] 2L_12483626_SNP [dm6]	A	C	1.889e^-4	0.903	UPSTREAM bun INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	12483846	2L_12483846_SNP [dm3] 2L_12483846_SNP [dm6]	T	C	1.889e^-4	0.903	UPSTREAM bun INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	12483877	2L_12483877_SNP [dm3] 2L_12483877_SNP [dm6]	C	A	1.889e^-4	0.903	UPSTREAM bun INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	12483907	2L_12483907_SNP [dm3] 2L_12483907_SNP [dm6]	A	C	1.889e^-4	0.903	UPSTREAM bun INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	12483923	2L_12483923_SNP [dm3] 2L_12483923_SNP [dm6]	T	C	1.889e^-4	0.903	UPSTREAM bun INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	12483940	2L_12483940_SNP [dm3] 2L_12483940_SNP [dm6]	G	A	1.889e^-4	0.903	UPSTREAM bun INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2L	12483952	2L_12483952_SNP [dm3] 2L_12483952_SNP [dm6]	G	A	1.889e^-4	0.903	UPSTREAM bun INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2L	12483968	2L_12483968_SNP [dm3] 2L_12483968_SNP [dm6]	T	C	1.889e^-4	0.903	UPSTREAM bun INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2L	12484000	2L_12484000_SNP [dm3] 2L_12484000_SNP [dm6]	T	C	1.889e^-4	0.903	UPSTREAM bun INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2L	12484001	2L_12484001_SNP [dm3] 2L_12484001_SNP [dm6]	A	G	1.889e^-4	0.903	UPSTREAM bun INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2L	12484012	2L_12484012_SNP [dm3] 2L_12484012_SNP [dm6]	T	A	1.889e^-4	0.903	UPSTREAM bun INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2L	12484013	2L_12484013_SNP [dm3] 2L_12484013_SNP [dm6]	A	G	1.889e^-4	0.903	UPSTREAM bun INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2L	12484065	2L_12484065_DEL [dm3] 2L_12484065_DEL [dm6]	TT	T	1.889e^-4	0.903	UPSTREAM bun INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	5072600	3L_5072600_SNP [dm3] 3L_5072600_SNP [dm6]	T	G	1.890e^-4	0.903	INTRON Con
3L	5008817	3L_5008817_SNP [dm3] 3L_5008817_SNP [dm6]	T	G	1.892e^-4	0.903	INTRON Con
2L	12604290	2L_12604290_SNP [dm3] 2L_12604290_SNP [dm6]	G	T	1.894e^-4	0.903	INTRON nub
2L	12390860	2L_12390860_SNP [dm3] 2L_12390860_SNP [dm6]	A	C	1.895e^-4	0.903	INTRON bru-2
2R	18702789	2R_18702789_SNP [dm3] 2R_22815284_SNP [dm6]	T	C	1.900e^-4	0.903	SYNONYMOUS_CODING stl	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	12484195	2L_12484195_SNP [dm3] 2L_12484195_SNP [dm6]	A	G	1.901e^-4	0.903	UPSTREAM bun INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	3535889	X_3535889_DEL [dm3] X_3641856_DEL [dm6]	ATTCGTATA	A	1.903e^-4	0.903	INTRON AstA-R1
2L	12482835	2L_12482835_SNP [dm3] 2L_12482835_SNP [dm6]	G	A	1.915e^-4	0.903	UTR_5_PRIME bun INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
2L	9930762	2L_9930762_SNP [dm3] 2L_9930762_SNP [dm6]	T	A	1.920e^-4	0.903	SYNONYMOUS_CODING CG42367 DOWNSTREAM CG42366	TF binding site mE1_TFBS_HSA
2R	10278754	2R_10278754_SNP [dm3] 2R_14391249_SNP [dm6]	C	T	1.943e^-4	0.903	SYNONYMOUS_CODING CG10104	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	16769521	X_16769521_SNP [dm3] X_16875488_SNP [dm6]	G	A	1.947e^-4	0.903	UPSTREAM CG13003 INTRON CG13003
2R	18395773	2R_18395773_SNP [dm3] 2R_22508268_SNP [dm6]	T	A	1.956e^-4	0.903	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18395774	2R_18395774_INS [dm3] 2R_22508269_INS [dm6]	A	ACCAT	1.956e^-4	0.903	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18395777	2R_18395777_SNP [dm3] 2R_22508272_SNP [dm6]	T	C	1.956e^-4	0.903	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13986405	3R_13986405_SNP [dm3] 3R_18160683_SNP [dm6]	A	G	1.962e^-4	0.903	UPSTREAM CR45104 DOWNSTREAM CG7218 INTERGENIC
3R	22750306	3R_22750306_SNP [dm3] 3R_26924584_SNP [dm6]	A	G	1.973e^-4	0.903	INTRON sda
X	19013123	X_19013123_INS [dm3] X_19119090_INS [dm6]	T	TCCATTCACT	1.979e^-4	0.903	INTERGENIC
3L	4659310	3L_4659310_SNP [dm3] 3L_4659310_SNP [dm6]	G	A	1.983e^-4	0.903	INTRON axo
X	13527370	X_13527370_SNP [dm3] X_13633337_SNP [dm6]	G	C	1.987e^-4	0.903	INTRON NFAT	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	16934786	2L_16934786_SNP [dm3] 2L_16934786_SNP [dm6]	A	G	1.988e^-4	0.903	INTERGENIC
X	12741039	X_12741039_SNP [dm3] X_12847006_SNP [dm6]	T	C	2.004e^-4	0.903	INTRON Pde9
3L	6896118	3L_6896118_SNP [dm3] 3L_6903018_SNP [dm6]	C	T	2.018e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	4482292	3L_4482292_SNP [dm3] 3L_4482292_SNP [dm6]	G	C	2.018e^-4	0.903	UPSTREAM CG11350 DOWNSTREAM CG7465 INTERGENIC
3L	4373616	3L_4373616_SNP [dm3] 3L_4373616_SNP [dm6]	C	A	2.024e^-4	0.903	INTRON DopEcR
X	5358982	X_5358982_SNP [dm3] X_5464949_SNP [dm6]	T	C	2.026e^-4	0.903	UTR_5_PRIME SPR INTRON SPR
3L	1430513	3L_1430513_SNP [dm3] 3L_1430513_SNP [dm6]	T	C	2.030e^-4	0.903	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	15457404	2L_15457404_SNP [dm3] 2L_15457404_SNP [dm6]	T	C	2.031e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	5358983	X_5358983_SNP [dm3] X_5464950_SNP [dm6]	T	G	2.035e^-4	0.903	START_GAINED SPR UTR_5_PRIME SPR INTRON SPR
2R	14272777	2R_14272777_SNP [dm3] 2R_18385272_SNP [dm6]	T	C	2.047e^-4	0.903	NON_SYNONYMOUS_CODING CG15067 DOWNSTREAM IM1 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	937328	3L_937328_SNP [dm3] 3L_937328_SNP [dm6]	A	C	2.054e^-4	0.903	INTRON Glut1
2R	18021840	2R_18021840_DEL [dm3] 2R_22134335_DEL [dm6]	TC	T	2.060e^-4	0.903	INTERGENIC
3L	8742516	3L_8742516_SNP [dm3] 3L_8749416_SNP [dm6]	A	T	2.076e^-4	0.903	SYNONYMOUS_CODING CG13306	TF binding site mE1_TFBS_bab1
2R	16392366	2R_16392366_SNP [dm3] 2R_20504861_SNP [dm6]	C	A	2.082e^-4	0.903	UTR_3_PRIME Obp57b UPSTREAM Obp57a DOWNSTREAM Obp57c & 1 other	regulatory region REDfly_CRMs
2L	21957246	2L_21957246_SNP [dm3] 2L_21957246_SNP [dm6]	G	A	2.091e^-4	0.903	UPSTREAM CR44217 INTERGENIC
2L	21957247	2L_21957247_DEL [dm3] 2L_21957247_DEL [dm6]	TTTA	T	2.091e^-4	0.903	UPSTREAM CR44217 INTERGENIC
3L	4951222	3L_4951222_SNP [dm3] 3L_4951222_SNP [dm6]	T	A	2.092e^-4	0.903	INTRON Con	TF binding site mE1_TFBS_chinmo
3L	4951234	3L_4951234_SNP [dm3] 3L_4951234_SNP [dm6]	T	A	2.092e^-4	0.903	INTRON Con	TF binding site mE1_TFBS_chinmo
2L	14712798	2L_14712798_SNP [dm3] 2L_14712798_SNP [dm6]	T	A	2.092e^-4	0.903	UPSTREAM CG34165 INTRON CG15282
2L	14712804	2L_14712804_SNP [dm3] 2L_14712804_SNP [dm6]	A	T	2.092e^-4	0.903	UPSTREAM CG34165 INTRON CG15282
2L	14712809	2L_14712809_SNP [dm3] 2L_14712809_SNP [dm6]	A	G	2.092e^-4	0.903	UPSTREAM CG34165 INTRON CG15282
3L	16904882	3L_16904882_INS [dm3] 3L_16911782_INS [dm6]	A	ACAATA	2.093e^-4	0.903	INTRON Lmpt
2L	13976928	2L_13976928_SNP [dm3] 2L_13976928_SNP [dm6]	C	A	2.097e^-4	0.903	UPSTREAM NimC1 & 1 other INTERGENIC
3R	13895264	3R_13895264_DEL [dm3] 3R_18069542_DEL [dm6]	GATATTTAATTGAAATTAAG...	G	2.098e^-4	0.903	INTERGENIC
2R	5283593	2R_5283593_SNP [dm3] 2R_9396088_SNP [dm6]	C	A	2.099e^-4	0.903	UTR_5_PRIME CG8800 DOWNSTREAM CG8801 & 1 other
2R	5283704	2R_5283704_SNP [dm3] 2R_9396199_SNP [dm6]	T	G	2.099e^-4	0.903	UTR_5_PRIME CG8800 DOWNSTREAM CG8801 & 1 other
2R	5284206	2R_5284206_SNP [dm3] 2R_9396701_SNP [dm6]	G	C	2.099e^-4	0.903	SYNONYMOUS_CODING CG8801 UPSTREAM CG8800	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
X	9959882	X_9959882_SNP [dm3] X_10065849_SNP [dm6]	A	G	2.100e^-4	0.903	INTRON CG15312
X	19264271	X_19264271_SNP [dm3] X_19370238_SNP [dm6]	C	T	2.104e^-4	0.903	INTRON kek5
2L	7357423	2L_7357423_SNP [dm3] 2L_7357423_SNP [dm6]	T	C	2.113e^-4	0.903	INTERGENIC
3L	7325625	3L_7325625_SNP [dm3] 3L_7332525_SNP [dm6]	G	A	2.122e^-4	0.903	SYNONYMOUS_CODING mus312 UTR_3_PRIME mus312 & 1 other	TF binding site mE1_TFBS_sens
3L	521551	3L_521551_INS [dm3] 3L_521551_INS [dm6]	C	CAACCACC	2.129e^-4	0.903	INTRON klar
3L	11228243	3L_11228243_SNP [dm3] 3L_11235143_SNP [dm6]	A	G	2.134e^-4	0.903	INTRON Ir68a
2R	13407932	2R_13407932_SNP [dm3] 2R_17520427_SNP [dm6]	C	A	2.137e^-4	0.903	UTR_3_PRIME Patronin
2L	10475148	2L_10475148_SNP [dm3] 2L_10475148_SNP [dm6]	T	A	2.146e^-4	0.903	UPSTREAM RluA-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12135445	2R_12135445_SNP [dm3] 2R_16247940_SNP [dm6]	T	G	2.171e^-4	0.903	INTRON CngA
2R	16371035	2R_16371035_SNP [dm3] 2R_20483530_SNP [dm6]	G	T	2.171e^-4	0.903	INTERGENIC
2L	7813546	2L_7813546_SNP [dm3] 2L_7813546_SNP [dm6]	T	G	2.175e^-4	0.903	UPSTREAM LanB1 INTRON LanB1	TF binding site BDTNP1_TFBS_twi
2L	2018042	2L_2018042_SNP [dm3] 2L_2018042_SNP [dm6]	G	T	2.176e^-4	0.903	INTRON CG4238
2L	2018083	2L_2018083_SNP [dm3] 2L_2018083_SNP [dm6]	G	A	2.176e^-4	0.903	INTRON CG4238
X	16766643	X_16766643_SNP [dm3] X_16872610_SNP [dm6]	C	A	2.179e^-4	0.903	INTRON CG13003
X	16768014	X_16768014_SNP [dm3] X_16873981_SNP [dm6]	A	G	2.179e^-4	0.903	INTRON CG13003
X	11282362	X_11282362_SNP [dm3] X_11388329_SNP [dm6]	C	G	2.180e^-4	0.903	UTR_3_PRIME dlg1 INTRON dlg1
3L	14480198	3L_14480198_SNP [dm3] 3L_14487098_SNP [dm6]	G	A	2.192e^-4	0.903	INTRON bbg
2L	16892262	2L_16892262_SNP [dm3] 2L_16892262_SNP [dm6]	T	C	2.198e^-4	0.903	SYNONYMOUS_CODING tweek	TF binding site mE1_TFBS_sens
2L	16916207	2L_16916207_SNP [dm3] 2L_16916207_SNP [dm6]	G	C	2.198e^-4	0.903	NON_SYNONYMOUS_CODING tweek
2L	13946317	2L_13946317_SNP [dm3] 2L_13946317_SNP [dm6]	T	C	2.200e^-4	0.903	INTRON Ance-3 & 1 other
3R	14812701	3R_14812701_SNP [dm3] 3R_18986979_SNP [dm6]	T	G	2.204e^-4	0.903	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	20477099	2R_20477099_SNP [dm3] 2R_24589576_SNP [dm6]	G	T	2.205e^-4	0.903	INTRON pio
3L	11772135	3L_11772135_SNP [dm3] 3L_11779035_SNP [dm6]	G	A	2.224e^-4	0.903	SYNONYMOUS_CODING CG14131 INTRON Pi3K68D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2506409	2L_2506409_SNP [dm3] 2L_2506409_SNP [dm6]	A	T	2.237e^-4	0.903	DOWNSTREAM CR44607 INTERGENIC
3R	8093060	3R_8093060_SNP [dm3] 3R_12267338_SNP [dm6]	C	G	2.246e^-4	0.903	INTRON svp	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3R	8093099	3R_8093099_SNP [dm3] 3R_12267377_SNP [dm6]	T	C	2.246e^-4	0.903	INTRON svp	regulatory region REDfly_CRMs
2R	7782156	2R_7782156_SNP [dm3] 2R_11894651_SNP [dm6]	C	A	2.257e^-4	0.903	SYNONYMOUS_CODING Ef1alpha48D	TF binding site mE1_TFBS_sens
X	13726289	X_13726289_SNP [dm3] X_13832256_SNP [dm6]	G	A	2.258e^-4	0.903	SYNONYMOUS_CODING AMPdeam UTR_3_PRIME AMPdeam	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2711441	3L_2711441_SNP [dm3] 3L_2711441_SNP [dm6]	A	G	2.265e^-4	0.903	UTR_5_PRIME Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13664001	3R_13664001_SNP [dm3] 3R_17838279_SNP [dm6]	G	A	2.266e^-4	0.903	INTRON tinc	TF binding site mE1_TFBS_inv
2L	335752	2L_335752_SNP [dm3] 2L_335752_SNP [dm6]	A	T	2.270e^-4	0.903	INTRON Plc21C
3L	4659296	3L_4659296_SNP [dm3] 3L_4659296_SNP [dm6]	T	C	2.271e^-4	0.903	INTRON axo
3L	4659302	3L_4659302_SNP [dm3] 3L_4659302_SNP [dm6]	A	G	2.271e^-4	0.903	INTRON axo
3L	4659304	3L_4659304_SNP [dm3] 3L_4659304_SNP [dm6]	A	T	2.271e^-4	0.903	INTRON axo
2R	19109781	2R_19109781_SNP [dm3] 2R_23222258_SNP [dm6]	T	C	2.291e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	16932878	2L_16932878_SNP [dm3] 2L_16932878_SNP [dm6]	T	A	2.292e^-4	0.903	INTERGENIC
2L	16932899	2L_16932899_SNP [dm3] 2L_16932899_SNP [dm6]	C	A	2.292e^-4	0.903	INTERGENIC
2L	16932924	2L_16932924_SNP [dm3] 2L_16932924_SNP [dm6]	A	T	2.292e^-4	0.903	INTERGENIC
2L	16932926	2L_16932926_SNP [dm3] 2L_16932926_SNP [dm6]	C	T	2.292e^-4	0.903	INTERGENIC
2L	16932931	2L_16932931_SNP [dm3] 2L_16932931_SNP [dm6]	T	C	2.292e^-4	0.903	INTERGENIC
2R	14088600	2R_14088600_SNP [dm3] 2R_18201095_SNP [dm6]	G	T	2.301e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17566754	X_17566754_SNP [dm3] X_17672721_SNP [dm6]	A	G	2.305e^-4	0.903	UTR_3_PRIME chas UPSTREAM CG12990
3L	4373618	3L_4373618_SNP [dm3] 3L_4373618_SNP [dm6]	A	C	2.312e^-4	0.903	INTRON DopEcR
X	16007417	X_16007417_DEL [dm3] X_16113384_DEL [dm6]	TATT	C	2.312e^-4	0.903	INTERGENIC
3L	20640464	3L_20640464_SNP [dm3] 3L_20647364_SNP [dm6]	A	G	2.315e^-4	0.903	INTERGENIC
X	11152305	X_11152305_SNP [dm3] X_11258272_SNP [dm6]	C	G	2.318e^-4	0.903	INTRON CG44422
3L	11536340	3L_11536340_SNP [dm3] 3L_11543240_SNP [dm6]	A	T	2.323e^-4	0.903	INTRON Mob2
2L	7357472	2L_7357472_SNP [dm3] 2L_7357472_SNP [dm6]	G	T	2.326e^-4	0.903	INTERGENIC
2L	7357473	2L_7357473_INS [dm3] 2L_7357473_INS [dm6]	A	ATATAATAG	2.326e^-4	0.903	INTERGENIC
2R	9182337	2R_9182337_SNP [dm3] 2R_13294832_SNP [dm6]	A	G	2.333e^-4	0.903	INTRON Dh31-R
2L	7235872	2L_7235872_SNP [dm3] 2L_7235872_SNP [dm6]	C	T	2.342e^-4	0.903	INTRON Ndae1	TF binding site mE1_TFBS_cad
X	11559313	X_11559313_INS [dm3] X_11665280_INS [dm6]	A	AATACTGTTAATA...	2.350e^-4	0.903	INTRON Ptp10D
X	16763526	X_16763526_SNP [dm3] X_16869493_SNP [dm6]	T	A	2.353e^-4	0.903	INTRON CG13003
3R	27388743	3R_27388743_SNP [dm3] 3R_31563021_SNP [dm6]	G	T	2.362e^-4	0.903	INTRON nyo
X	11152266	X_11152266_SNP [dm3] X_11258233_SNP [dm6]	A	G	2.373e^-4	0.903	INTRON CG44422
3L	5088334	3L_5088334_INS [dm3] 3L_5088334_INS [dm6]	A	AT	2.381e^-4	0.903	INTERGENIC
X	15105613	X_15105613_SNP [dm3] X_15211580_SNP [dm6]	A	C	2.385e^-4	0.903	DOWNSTREAM CG5662 INTERGENIC
X	15105638	X_15105638_SNP [dm3] X_15211605_SNP [dm6]	G	A	2.385e^-4	0.903	DOWNSTREAM CG5662 INTERGENIC
3R	13680954	3R_13680954_SNP [dm3] 3R_17855232_SNP [dm6]	G	T	2.391e^-4	0.903	INTRON tinc
3L	10282816	3L_10282816_SNP [dm3] 3L_10289716_SNP [dm6]	T	G	2.394e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18022040	2R_18022040_SNP [dm3] 2R_22134535_SNP [dm6]	G	C	2.394e^-4	0.903	INTERGENIC
2R	13406262	2R_13406262_SNP [dm3] 2R_17518757_SNP [dm6]	A	C	2.397e^-4	0.903	SYNONYMOUS_CODING CG4866 UPSTREAM APC10 DOWNSTREAM Patronin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18395779	2R_18395779_INS [dm3] 2R_22508274_INS [dm6]	T	TGCAATTAG	2.406e^-4	0.903	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21448990	3R_21448990_SNP [dm3] 3R_25623268_SNP [dm6]	G	C	2.407e^-4	0.903	SYNONYMOUS_CODING Npl4	TF binding site mE1_TFBS_sens
3L	12277832	3L_12277832_SNP [dm3] 3L_12284732_SNP [dm6]	A	T	2.415e^-4	0.903	INTERGENIC
X	2877315	X_2877315_SNP [dm3] X_2983282_SNP [dm6]	G	A	2.415e^-4	0.903	INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11228200	3L_11228200_SNP [dm3] 3L_11235100_SNP [dm6]	A	C	2.420e^-4	0.903	SYNONYMOUS_CODING Ir68a
3L	8757248	3L_8757248_SNP [dm3] 3L_8764148_SNP [dm6]	A	G	2.422e^-4	0.903	INTRON Fhos
3L	10215988	3L_10215988_SNP [dm3] 3L_10222888_SNP [dm6]	A	T	2.432e^-4	0.903	INTRON scramb1
3R	8565644	3R_8565644_SNP [dm3] 3R_12739922_SNP [dm6]	T	C	2.433e^-4	0.903	SYNONYMOUS_CODING CG5724
2R	18018302	2R_18018302_SNP [dm3] 2R_22130797_SNP [dm6]	A	T	2.434e^-4	0.903	SYNONYMOUS_CODING CG34205 DOWNSTREAM NtR	TF binding site mE1_TFBS_chinmo
3L	18925149	3L_18925149_SNP [dm3] 3L_18932049_SNP [dm6]	A	T	2.442e^-4	0.903	INTRON CG32204	TF binding site mE1_TFBS_inv
2R	8836156	2R_8836156_SNP [dm3] 2R_12948651_SNP [dm6]	T	A	2.450e^-4	0.903	UTR_3_PRIME CG44251	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23212977	3R_23212977_SNP [dm3] 3R_27387255_SNP [dm6]	G	C	2.462e^-4	0.903	INTRON side
3L	17311989	3L_17311989_SNP [dm3] 3L_17318889_SNP [dm6]	C	T	2.464e^-4	0.903	INTERGENIC
3L	11667455	3L_11667455_SNP [dm3] 3L_11674355_SNP [dm6]	G	C	2.480e^-4	0.903	SYNONYMOUS_CODING CG32085	TF binding site mE1_TFBS_cad
3R	18597947	3R_18597947_SNP [dm3] 3R_22772225_SNP [dm6]	T	C	2.493e^-4	0.903	UPSTREAM CG43095 INTRON Usp12-46 & 1 other
2R	5303805	2R_5303805_SNP [dm3] 2R_9416300_SNP [dm6]	T	C	2.500e^-4	0.903	INTRON wun2
3L	6896801	3L_6896801_SNP [dm3] 3L_6903701_SNP [dm6]	A	C	2.504e^-4	0.903	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	4235355	2L_4235355_SNP [dm3] 2L_4235355_SNP [dm6]	G	T	2.512e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	13408091	2R_13408091_SNP [dm3] 2R_17520586_SNP [dm6]	G	A	2.519e^-4	0.903	INTRON Patronin	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18021838	2R_18021838_SNP [dm3] 2R_22134333_SNP [dm6]	C	T	2.528e^-4	0.903	INTERGENIC
3L	11662782	3L_11662782_SNP [dm3] 3L_11669682_SNP [dm6]	A	G	2.540e^-4	0.903	INTRON CG32085
3L	11662795	3L_11662795_SNP [dm3] 3L_11669695_SNP [dm6]	C	G	2.540e^-4	0.903	INTRON CG32085
2L	16930479	2L_16930479_SNP [dm3] 2L_16930479_SNP [dm6]	C	G	2.546e^-4	0.903	INTERGENIC
2R	17726243	2R_17726243_SNP [dm3] 2R_21838738_SNP [dm6]	C	A	2.549e^-4	0.903	NON_SYNONYMOUS_CODING CG4372
3L	13294600	3L_13294600_SNP [dm3] 3L_13301500_SNP [dm6]	C	A	2.554e^-4	0.903	UPSTREAM SP & 1 other INTERGENIC
2L	12445808	2L_12445808_SNP [dm3] 2L_12445808_SNP [dm6]	G	A	2.563e^-4	0.903	START_GAINED Oatp33Ea UTR_5_PRIME Oatp33Ea DOWNSTREAM CG5421	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	14186735	2R_14186735_INS [dm3] 2R_18299230_INS [dm6]	G	GC	2.566e^-4	0.903	UPSTREAM CG18540 DOWNSTREAM CG18539 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	14186869	2R_14186869_SNP [dm3] 2R_18299364_SNP [dm6]	C	T	2.566e^-4	0.903	NON_SYNONYMOUS_CODING CG18540 DOWNSTREAM CG18539 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16690788	X_16690788_INS [dm3] X_16796755_INS [dm6]	A	AA	2.566e^-4	0.903	UTR_3_PRIME CG4768 DOWNSTREAM CG9132 & 1 other
2L	5062212	2L_5062212_SNP [dm3] 2L_5062212_SNP [dm6]	A	G	2.576e^-4	0.903	UPSTREAM qtc DOWNSTREAM CR43820 INTRON qtc
2L	5062213	2L_5062213_SNP [dm3] 2L_5062213_SNP [dm6]	A	C	2.576e^-4	0.903	UPSTREAM qtc DOWNSTREAM CR43820 INTRON qtc
2R	16932836	2R_16932836_SNP [dm3] 2R_21045331_SNP [dm6]	C	T	2.580e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10821828	2R_10821828_SNP [dm3] 2R_14934323_SNP [dm6]	C	T	2.589e^-4	0.903	DOWNSTREAM CG12853 INTRON CG10253	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	15067136	2R_15067136_SNP [dm3] 2R_19179631_SNP [dm6]	C	T	2.593e^-4	0.903	UTR_5_PRIME hppy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2R	15067138	2R_15067138_SNP [dm3] 2R_19179633_SNP [dm6]	C	G	2.593e^-4	0.903	UTR_5_PRIME hppy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3L	2187058	3L_2187058_SNP [dm3] 3L_2187058_SNP [dm6]	A	C	2.597e^-4	0.903	SYNONYMOUS_CODING CG13810	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1080600	3L_1080600_SNP [dm3] 3L_1080600_SNP [dm6]	G	A	2.606e^-4	0.903	INTRON bab1	TF binding site mE1_TFBS_chinmo
3L	1080611	3L_1080611_SNP [dm3] 3L_1080611_SNP [dm6]	A	G	2.606e^-4	0.903	INTRON bab1	TF binding site mE1_TFBS_chinmo
3L	15703899	3L_15703899_SNP [dm3] 3L_15710799_SNP [dm6]	G	T	2.623e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1421965	3L_1421965_INS [dm3] 3L_1421965_INS [dm6]	T	TGTACTTTTAGA...	2.628e^-4	0.903	UTR_3_PRIME CG9173 INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23430824	3R_23430824_SNP [dm3] 3R_27605102_SNP [dm6]	T	G	2.635e^-4	0.903	INTRON dsd	TF binding site mE1_TFBS_cad
2R	15167622	2R_15167622_SNP [dm3] 2R_19280117_SNP [dm6]	A	G	2.635e^-4	0.903	SYNONYMOUS_CODING rib UTR_3_PRIME rib	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	15176422	3L_15176422_SNP [dm3] 3L_15183322_SNP [dm6]	G	T	2.647e^-4	0.903	INTERGENIC
3L	9253931	3L_9253931_MNP [dm3] 3L_9260831_MNP [dm6]	AAG	TTA	2.658e^-4	0.903	INTRON GluRIB	TF binding site BDTNP1_TFBS_twi
X	10134033	X_10134033_SNP [dm3] X_10240000_SNP [dm6]	G	C	2.659e^-4	0.903	INTRON Hk
X	10134049	X_10134049_SNP [dm3] X_10240016_SNP [dm6]	A	G	2.659e^-4	0.903	INTRON Hk
2L	13393479	2L_13393479_SNP [dm3] 2L_13393479_SNP [dm6]	G	A	2.675e^-4	0.903	SYNONYMOUS_CODING CG7099 DOWNSTREAM RpL24	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	8535415	3L_8535415_SNP [dm3] 3L_8542315_SNP [dm6]	G	A	2.681e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14272772	2R_14272772_SNP [dm3] 2R_18385267_SNP [dm6]	C	A	2.681e^-4	0.903	NON_SYNONYMOUS_CODING CG15067 DOWNSTREAM IM1 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7991969	3L_7991969_SNP [dm3] 3L_7998869_SNP [dm6]	A	T	2.683e^-4	0.903	INTRON nmo
2L	9125543	2L_9125543_SNP [dm3] 2L_9125543_SNP [dm6]	C	T	2.686e^-4	0.903	UPSTREAM CG32982 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	18979297	3L_18979297_SNP [dm3] 3L_18986197_SNP [dm6]	G	A	2.687e^-4	0.903	SYNONYMOUS_CODING CG11619 DOWNSTREAM CG14075
3L	13976426	3L_13976426_SNP [dm3] 3L_13983326_SNP [dm6]	G	A	2.691e^-4	0.903	INTRON CG17364
3L	14488068	3L_14488068_SNP [dm3] 3L_14494968_SNP [dm6]	A	T	2.706e^-4	0.903	INTRON bbg
2R	20698394	2R_20698394_SNP [dm3] 2R_24810871_SNP [dm6]	C	T	2.710e^-4	0.903	DOWNSTREAM CG42851 INTERGENIC	regulatory region FlyBase REDfly_CRMs
X	16454125	X_16454125_DEL [dm3] X_16560092_DEL [dm6]	GGAAG	G	2.714e^-4	0.903	UPSTREAM Pp2B-14D DOWNSTREAM CanA-14F INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	4223770	2L_4223770_SNP [dm3] 2L_4223770_SNP [dm6]	G	A	2.721e^-4	0.903	DOWNSTREAM CG3702 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	20344791	2R_20344791_SNP [dm3] 2R_24457268_SNP [dm6]	C	A	2.724e^-4	0.903	INTRON CG13579
3L	3827504	3L_3827504_DEL [dm3] 3L_3827504_DEL [dm6]	TCTATT	T	2.725e^-4	0.903	INTRON enc & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16767432	X_16767432_SNP [dm3] X_16873399_SNP [dm6]	G	T	2.729e^-4	0.903	INTRON CG13003
2R	13406370	2R_13406370_SNP [dm3] 2R_17518865_SNP [dm6]	G	A	2.737e^-4	0.903	SYNONYMOUS_CODING CG4866 UPSTREAM APC10 DOWNSTREAM Patronin	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	4730521	X_4730521_SNP [dm3] X_4836488_SNP [dm6]	A	T	2.739e^-4	0.903	INTERGENIC
2R	5611006	2R_5611006_SNP [dm3] 2R_9723501_SNP [dm6]	G	A	2.741e^-4	0.903	INTRON sqa
3L	504922	3L_504922_SNP [dm3] 3L_504922_SNP [dm6]	A	C	2.742e^-4	0.903	INTRON klar
X	16766292	X_16766292_SNP [dm3] X_16872259_SNP [dm6]	C	T	2.749e^-4	0.903	INTRON CG13003
X	16767297	X_16767297_SNP [dm3] X_16873264_SNP [dm6]	A	G	2.749e^-4	0.903	INTRON CG13003
X	16767401	X_16767401_SNP [dm3] X_16873368_SNP [dm6]	A	T	2.749e^-4	0.903	INTRON CG13003
X	16767984	X_16767984_SNP [dm3] X_16873951_SNP [dm6]	T	A	2.749e^-4	0.903	INTRON CG13003
X	16768152	X_16768152_SNP [dm3] X_16874119_SNP [dm6]	A	C	2.749e^-4	0.903	INTRON CG13003
X	16768553	X_16768553_SNP [dm3] X_16874520_SNP [dm6]	A	G	2.749e^-4	0.903	INTRON CG13003
X	16769511	X_16769511_SNP [dm3] X_16875478_SNP [dm6]	A	G	2.749e^-4	0.903	UPSTREAM CG13003 INTRON CG13003
X	16769534	X_16769534_SNP [dm3] X_16875501_SNP [dm6]	T	C	2.749e^-4	0.903	UPSTREAM CG13003 INTRON CG13003
X	16769535	X_16769535_SNP [dm3] X_16875502_SNP [dm6]	G	T	2.749e^-4	0.903	UPSTREAM CG13003 INTRON CG13003
X	16758838	X_16758838_DEL [dm3] X_16864805_DEL [dm6]	AAGCA	A	2.768e^-4	0.903	INTRON CG13003	TF binding site BDTNP1_TFBS_twi
X	16758847	X_16758847_DEL [dm3] X_16864814_DEL [dm6]	TATATCCATCCAT...	T	2.768e^-4	0.903	INTRON CG13003	TF binding site BDTNP1_TFBS_twi
X	16759152	X_16759152_SNP [dm3] X_16865119_SNP [dm6]	C	G	2.768e^-4	0.903	INTRON CG13003	TF binding site BDTNP1_TFBS_twi
X	16761502	X_16761502_SNP [dm3] X_16867469_SNP [dm6]	T	A	2.768e^-4	0.903	INTRON CG13003
X	16761852	X_16761852_SNP [dm3] X_16867819_SNP [dm6]	A	C	2.768e^-4	0.903	INTRON CG13003
X	16761869	X_16761869_SNP [dm3] X_16867836_SNP [dm6]	G	A	2.768e^-4	0.903	INTRON CG13003
X	16763453	X_16763453_SNP [dm3] X_16869420_SNP [dm6]	G	C	2.768e^-4	0.903	INTRON CG13003
X	16764097	X_16764097_SNP [dm3] X_16870064_SNP [dm6]	C	T	2.768e^-4	0.903	INTRON CG13003
3R	12243708	3R_12243708_SNP [dm3] 3R_16417986_SNP [dm6]	C	T	2.771e^-4	0.903	INTERGENIC	regulatory region REDfly_CRMs
3R	12243808	3R_12243808_SNP [dm3] 3R_16418086_SNP [dm6]	G	A	2.771e^-4	0.903	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	12243811	3R_12243811_SNP [dm3] 3R_16418089_SNP [dm6]	A	T	2.771e^-4	0.903	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	6142795	2R_6142795_SNP [dm3] 2R_10255290_SNP [dm6]	T	A	2.774e^-4	0.903	UTR_3_PRIME CG12913 DOWNSTREAM CG12913
3R	8671633	3R_8671633_SNP [dm3] 3R_12845911_SNP [dm6]	G	A	2.777e^-4	0.903	INTRON beat-Va
2L	9129210	2L_9129210_SNP [dm3] 2L_9129210_SNP [dm6]	C	T	2.789e^-4	0.903	INTRON CG32982	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17768240	3R_17768240_INS [dm3] 3R_21942518_INS [dm6]	A	AGC	2.793e^-4	0.903	INTERGENIC
X	19735457	X_19735457_SNP [dm3] X_19841424_SNP [dm6]	G	T	2.798e^-4	0.903	INTRON pico	TF binding site BDTNP1_TFBS_da
X	19735583	X_19735583_SNP [dm3] X_19841550_SNP [dm6]	A	G	2.798e^-4	0.903	INTRON pico	TF binding site BDTNP1_TFBS_da
X	19735673	X_19735673_SNP [dm3] X_19841640_SNP [dm6]	A	G	2.798e^-4	0.903	INTRON pico	TF binding site BDTNP1_TFBS_da
X	19735898	X_19735898_SNP [dm3] X_19841865_SNP [dm6]	C	T	2.798e^-4	0.903	INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	2649709	2L_2649709_SNP [dm3] 2L_2649709_SNP [dm6]	T	C	2.801e^-4	0.903	SYNONYMOUS_CODING CG33125 UTR_3_PRIME CG33125
2L	2712248	2L_2712248_SNP [dm3] 2L_2712248_SNP [dm6]	A	G	2.804e^-4	0.903	INTRON CG31690	TF binding site mE1_TFBS_chinmo
2L	14705040	2L_14705040_SNP [dm3] 2L_14705040_SNP [dm6]	A	G	2.829e^-4	0.909	INTERGENIC
X	16796925	X_16796925_SNP [dm3] X_16902892_SNP [dm6]	T	A	2.840e^-4	0.909	EXON CR44754
2L	4561672	2L_4561672_SNP [dm3] 2L_4561672_SNP [dm6]	C	T	2.841e^-4	0.909	SYNONYMOUS_CODING dp INTRON dp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	15105628	X_15105628_SNP [dm3] X_15211595_SNP [dm6]	C	T	2.842e^-4	0.909	DOWNSTREAM CG5662 INTERGENIC
2R	15318116	2R_15318116_SNP [dm3] 2R_19430611_SNP [dm6]	C	T	2.848e^-4	0.909	DOWNSTREAM Fak & 1 other INTERGENIC
2L	3678559	2L_3678559_SNP [dm3] 2L_3678559_SNP [dm6]	T	G	2.861e^-4	0.909	INTRON CG34340
3L	12758230	3L_12758230_SNP [dm3] 3L_12765130_SNP [dm6]	A	T	2.861e^-4	0.909	SPLICE_SITE_REGION CG32113 INTRON CG32113	TF binding site mE1_TFBS_cad
2R	16182155	2R_16182155_SNP [dm3] 2R_20294650_SNP [dm6]	G	A	2.864e^-4	0.909	EXON CR44639
2R	17028512	2R_17028512_SNP [dm3] 2R_21141007_SNP [dm6]	A	C	2.869e^-4	0.909	INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	13272412	3L_13272412_SNP [dm3] 3L_13279312_SNP [dm6]	G	T	2.871e^-4	0.909	UTR_3_PRIME caps UPSTREAM tRNA:CR32123:Psi
X	16454196	X_16454196_SNP [dm3] X_16560163_SNP [dm6]	T	C	2.878e^-4	0.909	UPSTREAM Pp2B-14D DOWNSTREAM CanA-14F INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	16926845	2L_16926845_SNP [dm3] 2L_16926845_SNP [dm6]	T	A	2.884e^-4	0.91	INTERGENIC
3L	8535513	3L_8535513_INS [dm3] 3L_8542413_INS [dm6]	T	TC	2.911e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8535532	3L_8535532_SNP [dm3] 3L_8542432_SNP [dm6]	C	T	2.911e^-4	0.91	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	1428400	3R_1428400_SNP [dm3] 3R_5602678_SNP [dm6]	C	A	2.915e^-4	0.91	NON_SYNONYMOUS_CODING CG1427 UTR_3_PRIME CG1427 DOWNSTREAM asl	TF binding site mE1_TFBS_sens
3L	11581622	3L_11581622_SNP [dm3] 3L_11588522_SNP [dm6]	T	G	2.921e^-4	0.91	UPSTREAM rt INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	16454312	X_16454312_SNP [dm3] X_16560279_SNP [dm6]	A	G	2.921e^-4	0.91	UPSTREAM Pp2B-14D DOWNSTREAM CanA-14F INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	16769519	X_16769519_SNP [dm3] X_16875486_SNP [dm6]	T	A	2.921e^-4	0.91	UPSTREAM CG13003 INTRON CG13003
3L	3827519	3L_3827519_SNP [dm3] 3L_3827519_SNP [dm6]	T	C	2.925e^-4	0.91	INTRON enc & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4066040	2R_4066040_DEL [dm3] 2R_8178535_DEL [dm6]	AC	A	2.930e^-4	0.91	INTRON LRP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	4659280	3L_4659280_SNP [dm3] 3L_4659280_SNP [dm6]	A	G	2.936e^-4	0.91	INTRON axo
3L	4659283	3L_4659283_SNP [dm3] 3L_4659283_SNP [dm6]	A	C	2.936e^-4	0.91	INTRON axo
X	12949219	X_12949219_SNP [dm3] X_13055186_SNP [dm6]	T	C	2.945e^-4	0.91	NON_SYNONYMOUS_CODING CG12715 DOWNSTREAM CR44840 INTRON rad	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	1519619	X_1519619_SNP [dm3] X_1625586_SNP [dm6]	G	A	2.956e^-4	0.91	INTRON Mur2B & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	4482772	3L_4482772_SNP [dm3] 3L_4482772_SNP [dm6]	C	A	2.960e^-4	0.91	UPSTREAM CG11350 INTERGENIC
2L	3678533	2L_3678533_SNP [dm3] 2L_3678533_SNP [dm6]	T	A	2.965e^-4	0.91	INTRON CG34340
3L	12451286	3L_12451286_SNP [dm3] 3L_12458186_SNP [dm6]	G	A	2.971e^-4	0.91	INTERGENIC
3L	5982455	3L_5982455_SNP [dm3] 3L_5989355_SNP [dm6]	C	T	2.975e^-4	0.91	INTERGENIC
2R	15317315	2R_15317315_SNP [dm3] 2R_19429810_SNP [dm6]	G	T	2.977e^-4	0.91	DOWNSTREAM CalpA & 1 other INTRON CalpA
3L	4104033	3L_4104033_DEL [dm3] 3L_4104033_DEL [dm6]	AG	C	2.979e^-4	0.91	UTR_5_PRIME Fit1 UPSTREAM CG14995	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	16767456	X_16767456_SNP [dm3] X_16873423_SNP [dm6]	T	C	2.985e^-4	0.91	INTRON CG13003
3L	12278230	3L_12278230_SNP [dm3] 3L_12285130_SNP [dm6]	A	T	3.006e^-4	0.91	INTERGENIC
3L	8455454	3L_8455454_SNP [dm3] 3L_8462354_SNP [dm6]	G	C	3.006e^-4	0.91	INTRON Gug	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16985070	X_16985070_INS [dm3] X_17091037_INS [dm6]	A	ACTA	3.007e^-4	0.91	UPSTREAM CG16700 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18873971	2R_18873971_SNP [dm3] 2R_22986448_SNP [dm6]	G	A	3.008e^-4	0.91	UPSTREAM CG9897 INTRON twi EXON CR42742
3L	14095905	3L_14095905_SNP [dm3] 3L_14102805_SNP [dm6]	T	C	3.011e^-4	0.91	DOWNSTREAM Sox21a INTERGENIC
3L	16694263	3L_16694263_SNP [dm3] 3L_16701163_SNP [dm6]	G	T	3.018e^-4	0.91	INTRON Lasp & 1 other
3R	5314365	3R_5314365_SNP [dm3] 3R_9488643_SNP [dm6]	C	T	3.029e^-4	0.91	INTRON CG16779	TF binding site BDTNP1_TFBS_dl
2L	16928499	2L_16928499_SNP [dm3] 2L_16928499_SNP [dm6]	G	A	3.031e^-4	0.91	INTERGENIC	TF binding site mE1_TFBS_inv
X	20110413	X_20110413_SNP [dm3] X_20239339_SNP [dm6]	T	A	3.032e^-4	0.91	UPSTREAM obst-A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	13329805	2L_13329805_SNP [dm3] 2L_13329805_SNP [dm6]	T	A	3.038e^-4	0.91	INTRON CG43778
3L	12150105	3L_12150105_SNP [dm3] 3L_12157005_SNP [dm6]	G	C	3.046e^-4	0.91	DOWNSTREAM CG9760 & 1 other INTERGENIC
3L	12150119	3L_12150119_SNP [dm3] 3L_12157019_SNP [dm6]	G	A	3.046e^-4	0.91	DOWNSTREAM CG9760 & 1 other INTERGENIC
3R	13042746	3R_13042746_SNP [dm3] 3R_17217024_SNP [dm6]	T	A	3.047e^-4	0.91	DOWNSTREAM CG31262 INTERGENIC
3R	15033587	3R_15033587_SNP [dm3] 3R_19207865_SNP [dm6]	C	A	3.063e^-4	0.911	INTERGENIC
3L	7095884	3L_7095884_SNP [dm3] 3L_7102784_SNP [dm6]	C	T	3.065e^-4	0.911	INTRON form3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16934423	2R_16934423_SNP [dm3] 2R_21046918_SNP [dm6]	C	A	3.065e^-4	0.911	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	16932893	2L_16932893_SNP [dm3] 2L_16932893_SNP [dm6]	T	A	3.070e^-4	0.911	INTERGENIC
3L	6896390	3L_6896390_SNP [dm3] 3L_6903290_SNP [dm6]	G	A	3.076e^-4	0.912	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
3L	4487881	3L_4487881_SNP [dm3] 3L_4487881_SNP [dm6]	A	C	3.095e^-4	0.912	INTRON CG13722
2L	9122860	2L_9122860_SNP [dm3] 2L_9122860_SNP [dm6]	G	T	3.096e^-4	0.912	UPSTREAM CR44616 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6954718	3L_6954718_SNP [dm3] 3L_6961618_SNP [dm6]	G	A	3.102e^-4	0.912	INTRON sgl
2L	2018026	2L_2018026_SNP [dm3] 2L_2018026_SNP [dm6]	A	G	3.106e^-4	0.912	INTRON CG4238
X	16761843	X_16761843_SNP [dm3] X_16867810_SNP [dm6]	A	T	3.110e^-4	0.912	INTRON CG13003
3L	16694281	3L_16694281_SNP [dm3] 3L_16701181_SNP [dm6]	G	A	3.110e^-4	0.912	INTRON Lasp & 1 other
X	4490520	X_4490520_SNP [dm3] X_4596487_SNP [dm6]	C	G	3.133e^-4	0.912	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	6903921	3R_6903921_SNP [dm3] 3R_11078199_SNP [dm6]	T	C	3.138e^-4	0.912	INTERGENIC
2L	16108085	2L_16108085_SNP [dm3] 2L_16108085_SNP [dm6]	C	G	3.139e^-4	0.912	INTERGENIC
2R	9762819	2R_9762819_SNP [dm3] 2R_13875314_SNP [dm6]	T	C	3.143e^-4	0.912	SYNONYMOUS_CODING shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	12081552	2R_12081552_SNP [dm3] 2R_16194047_SNP [dm6]	A	G	3.144e^-4	0.912	UTR_3_PRIME clu DOWNSTREAM calypso
2R	16224654	2R_16224654_SNP [dm3] 2R_20337149_SNP [dm6]	T	C	3.158e^-4	0.912	INTERGENIC
X	15175045	X_15175045_SNP [dm3] X_15281012_SNP [dm6]	T	C	3.163e^-4	0.912	INTERGENIC
3L	16034550	3L_16034550_DEL [dm3] 3L_16041450_DEL [dm6]	CC	C	3.165e^-4	0.912	UPSTREAM th INTRON th	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	13574267	3R_13574267_SNP [dm3] 3R_17748545_SNP [dm6]	G	A	3.167e^-4	0.912	INTERGENIC
3R	14534700	3R_14534700_SNP [dm3] 3R_18708978_SNP [dm6]	C	A	3.190e^-4	0.912	INTRON VAChT & 1 other
3L	3260903	3L_3260903_SNP [dm3] 3L_3260903_SNP [dm6]	C	A	3.194e^-4	0.912	INTRON ckd
3L	3260906	3L_3260906_SNP [dm3] 3L_3260906_SNP [dm6]	A	T	3.194e^-4	0.912	INTRON ckd
X	16454208	X_16454208_SNP [dm3] X_16560175_SNP [dm6]	C	A	3.195e^-4	0.912	UPSTREAM Pp2B-14D DOWNSTREAM CanA-14F INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	15317590	2R_15317590_SNP [dm3] 2R_19430085_SNP [dm6]	T	C	3.208e^-4	0.912	SYNONYMOUS_CODING CalpA DOWNSTREAM Fak
2R	19795219	2R_19795219_SNP [dm3] 2R_23907696_SNP [dm6]	G	C	3.210e^-4	0.912	UTR_5_PRIME kcc UPSTREAM Nap1 & 1 other DOWNSTREAM CR44806	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15318102	2R_15318102_SNP [dm3] 2R_19430597_SNP [dm6]	A	G	3.212e^-4	0.912	DOWNSTREAM Fak & 1 other INTERGENIC
2L	12483050	2L_12483050_DEL [dm3] 2L_12483050_DEL [dm6]	CTTCTTAACACACCGAAC...	C	3.231e^-4	0.912	UTR_5_PRIME bun INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
2L	1902790	2L_1902790_SNP [dm3] 2L_1902790_SNP [dm6]	C	G	3.233e^-4	0.912	INTRON CG7337
2R	9240517	2R_9240517_SNP [dm3] 2R_13353012_SNP [dm6]	A	T	3.245e^-4	0.912	DOWNSTREAM CG17048 INTRON CR44206
2R	9437443	2R_9437443_SNP [dm3] 2R_13549938_SNP [dm6]	A	C	3.254e^-4	0.912	INTRON CG33156	TF binding site mE1_TFBS_inv
3L	8837564	3L_8837564_SNP [dm3] 3L_8844464_SNP [dm6]	A	G	3.255e^-4	0.912	INTRON dally
3L	12510919	3L_12510919_SNP [dm3] 3L_12517819_SNP [dm6]	C	T	3.271e^-4	0.912	SYNONYMOUS_CODING tral	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	15548937	X_15548937_DEL [dm3] X_15654904_DEL [dm6]	GCTTAAATTATTATTCTGCG...	AG	3.273e^-4	0.912	INTERGENIC
X	15548973	X_15548973_SNP [dm3] X_15654940_SNP [dm6]	G	A	3.273e^-4	0.912	INTERGENIC
X	15548976	X_15548976_SNP [dm3] X_15654943_SNP [dm6]	A	C	3.273e^-4	0.912	INTERGENIC
X	16758302	X_16758302_SNP [dm3] X_16864269_SNP [dm6]	C	G	3.275e^-4	0.912	INTRON CG13003	TF binding site BDTNP1_TFBS_twi
2L	10873652	2L_10873652_SNP [dm3] 2L_10873652_SNP [dm6]	G	C	3.278e^-4	0.912	INTERGENIC
2L	12483913	2L_12483913_SNP [dm3] 2L_12483913_SNP [dm6]	T	A	3.279e^-4	0.912	UPSTREAM bun INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	12483996	2L_12483996_DEL [dm3] 2L_12483996_DEL [dm6]	CC	C	3.279e^-4	0.912	UPSTREAM bun INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2L	12484123	2L_12484123_SNP [dm3] 2L_12484123_SNP [dm6]	C	T	3.279e^-4	0.912	UPSTREAM bun INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2L	12484176	2L_12484176_SNP [dm3] 2L_12484176_SNP [dm6]	T	C	3.279e^-4	0.912	UPSTREAM bun INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	11667139	3L_11667139_SNP [dm3] 3L_11674039_SNP [dm6]	T	C	3.281e^-4	0.912	INTRON CG32085
2L	7186558	2L_7186558_SNP [dm3] 2L_7186558_SNP [dm6]	T	A	3.282e^-4	0.912	NON_SYNONYMOUS_CODING CG4496	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8454497	3L_8454497_SNP [dm3] 3L_8461397_SNP [dm6]	T	G	3.288e^-4	0.912	INTRON Gug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	16295473	2R_16295473_SNP [dm3] 2R_20407968_SNP [dm6]	C	T	3.291e^-4	0.912	INTERGENIC
3L	7451099	3L_7451099_SNP [dm3] 3L_7457999_SNP [dm6]	T	A	3.300e^-4	0.912	INTRON ppk26
2R	16338320	2R_16338320_SNP [dm3] 2R_20450815_SNP [dm6]	A	G	3.324e^-4	0.912	INTRON CG12484
X	16760539	X_16760539_SNP [dm3] X_16866506_SNP [dm6]	C	T	3.330e^-4	0.912	INTRON CG13003	TF binding site BDTNP1_TFBS_twi
3R	3706737	3R_3706737_SNP [dm3] 3R_7881015_SNP [dm6]	C	A	3.333e^-4	0.912	INTRON CG17816
3R	4971133	3R_4971133_SNP [dm3] 3R_9145411_SNP [dm6]	G	C	3.333e^-4	0.912	INTRON pum	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14487981	3L_14487981_SNP [dm3] 3L_14494881_SNP [dm6]	C	T	3.338e^-4	0.912	INTRON bbg
3R	18080943	3R_18080943_SNP [dm3] 3R_22255221_SNP [dm6]	G	A	3.341e^-4	0.912	INTRON SKIP
2L	3177569	2L_3177569_SNP [dm3] 2L_3177569_SNP [dm6]	C	T	3.345e^-4	0.912	INTRON CG34393	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2L	13534340	2L_13534340_SNP [dm3] 2L_13534340_SNP [dm6]	G	T	3.346e^-4	0.912	DOWNSTREAM CG33645 & 1 other INTRON B4	TF binding site BDTNP1_TFBS_dl
2R	16224331	2R_16224331_SNP [dm3] 2R_20336826_SNP [dm6]	T	G	3.350e^-4	0.912	INTERGENIC
3L	1867336	3L_1867336_SNP [dm3] 3L_1867336_SNP [dm6]	T	C	3.352e^-4	0.912	SYNONYMOUS_CODING CG12025	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12277711	3L_12277711_SNP [dm3] 3L_12284611_SNP [dm6]	C	T	3.354e^-4	0.912	INTERGENIC
2L	7797077	2L_7797077_SNP [dm3] 2L_7797077_SNP [dm6]	A	T	3.364e^-4	0.912	SYNONYMOUS_CODING Herp DOWNSTREAM CR44825	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	68324	2R_68324_SNP [dm3] 2R_4180819_SNP [dm6]	C	T	3.367e^-4	0.912	INTERGENIC
3L	6895795	3L_6895795_SNP [dm3] 3L_6902695_SNP [dm6]	G	A	3.374e^-4	0.912	INTERGENIC
2L	625715	2L_625715_SNP [dm3] 2L_625715_SNP [dm6]	G	A	3.375e^-4	0.912	NON_SYNONYMOUS_CODING CG2839 DOWNSTREAM lectin-21Ca	TF binding site BDTNP1_TFBS_dl
3L	13769844	3L_13769844_SNP [dm3] 3L_13776744_SNP [dm6]	T	C	3.376e^-4	0.912	INTRON bru-3
3L	19156212	3L_19156212_SNP [dm3] 3L_19163112_SNP [dm6]	C	T	3.379e^-4	0.912	INTRON fz2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	13328876	2L_13328876_SNP [dm3] 2L_13328876_SNP [dm6]	T	C	3.389e^-4	0.912	INTRON CG43778
X	11151934	X_11151934_SNP [dm3] X_11257901_SNP [dm6]	G	A	3.391e^-4	0.912	INTRON CG44422	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	13726169	X_13726169_SNP [dm3] X_13832136_SNP [dm6]	C	T	3.391e^-4	0.912	SYNONYMOUS_CODING AMPdeam UTR_3_PRIME AMPdeam	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13406896	2R_13406896_SNP [dm3] 2R_17519391_SNP [dm6]	A	G	3.400e^-4	0.912	UTR_3_PRIME Patronin DOWNSTREAM Patronin & 1 other
2R	13406907	2R_13406907_SNP [dm3] 2R_17519402_SNP [dm6]	G	C	3.400e^-4	0.912	UTR_3_PRIME Patronin DOWNSTREAM Patronin & 1 other
3R	13042860	3R_13042860_SNP [dm3] 3R_17217138_SNP [dm6]	G	T	3.416e^-4	0.914	UTR_3_PRIME CG31262
3R	13042864	3R_13042864_SNP [dm3] 3R_17217142_SNP [dm6]	C	A	3.416e^-4	0.914	UTR_3_PRIME CG31262
3L	16166122	3L_16166122_SNP [dm3] 3L_16173022_SNP [dm6]	G	T	3.423e^-4	0.914	INTERGENIC
2L	16932911	2L_16932911_SNP [dm3] 2L_16932911_SNP [dm6]	T	G	3.449e^-4	0.919	INTERGENIC
2R	3210447	2R_3210447_SNP [dm3] 2R_7322942_SNP [dm6]	G	A	3.457e^-4	0.919	SYNONYMOUS_CODING Dscam1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17744896	2R_17744896_SNP [dm3] 2R_21857391_SNP [dm6]	C	G	3.460e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
2R	17745063	2R_17745063_SNP [dm3] 2R_21857558_SNP [dm6]	T	A	3.460e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	12455488	2L_12455488_SNP [dm3] 2L_12455488_SNP [dm6]	C	T	3.484e^-4	0.922	DOWNSTREAM bun & 1 other INTERGENIC
X	5714594	X_5714594_INS [dm3] X_5820561_INS [dm6]	T	TTGAGCT	3.489e^-4	0.922	INTRON CG15765
3L	9505094	3L_9505094_SNP [dm3] 3L_9511994_SNP [dm6]	A	C	3.499e^-4	0.922	UPSTREAM RpS9 DOWNSTREAM CG33703 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_HSA
X	15175030	X_15175030_SNP [dm3] X_15280997_SNP [dm6]	C	T	3.503e^-4	0.922	INTERGENIC
2R	5626609	2R_5626609_SNP [dm3] 2R_9739104_SNP [dm6]	G	A	3.530e^-4	0.922	INTRON sqa
2L	9914430	2L_9914430_SNP [dm3] 2L_9914430_SNP [dm6]	C	G	3.531e^-4	0.922	SYNONYMOUS_CODING Srp54 UPSTREAM yip2
3L	8454465	3L_8454465_SNP [dm3] 3L_8461365_SNP [dm6]	T	G	3.535e^-4	0.922	INTRON Gug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	22902362	3R_22902362_SNP [dm3] 3R_27076640_SNP [dm6]	C	T	3.542e^-4	0.922	INTRON CG14257
3L	2833704	3L_2833704_SNP [dm3] 3L_2833704_SNP [dm6]	T	A	3.549e^-4	0.922	INTRON CG43444
2R	18028150	2R_18028150_SNP [dm3] 2R_22140645_SNP [dm6]	C	T	3.552e^-4	0.922	SYNONYMOUS_CODING gom INTRON a	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12931729	3R_12931729_SNP [dm3] 3R_17106007_SNP [dm6]	A	C	3.561e^-4	0.922	INTRON cher
3L	7192554	3L_7192554_SNP [dm3] 3L_7199454_SNP [dm6]	G	A	3.563e^-4	0.922	INTERGENIC
2R	20706269	2R_20706269_SNP [dm3] 2R_24818746_SNP [dm6]	T	C	3.566e^-4	0.922	INTRON Dll
3R	15373465	3R_15373465_SNP [dm3] 3R_19547743_SNP [dm6]	A	G	3.567e^-4	0.922	INTRON Dys
3L	19353558	3L_19353558_SNP [dm3] 3L_19360458_SNP [dm6]	G	C	3.569e^-4	0.922	INTRON CG32206
2L	12865263	2L_12865263_SNP [dm3] 2L_12865263_SNP [dm6]	A	T	3.569e^-4	0.922	INTERGENIC
2L	12865264	2L_12865264_DEL [dm3] 2L_12865264_DEL [dm6]	GG	G	3.569e^-4	0.922	INTERGENIC
3L	5230172	3L_5230172_SNP [dm3] 3L_5237072_SNP [dm6]	G	A	3.573e^-4	0.922	DOWNSTREAM CG4669 INTRON shep
2R	11214850	2R_11214850_SNP [dm3] 2R_15327345_SNP [dm6]	C	G	3.584e^-4	0.922	UTR_3_PRIME CG8160 UPSTREAM CG8157
2R	11214855	2R_11214855_DEL [dm3] 2R_15327350_DEL [dm6]	AA	A	3.584e^-4	0.922	UTR_3_PRIME CG8160 UPSTREAM CG8157
2L	9731284	2L_9731284_SNP [dm3] 2L_9731284_SNP [dm6]	A	T	3.591e^-4	0.922	DOWNSTREAM CG13116 INTRON Nckx30C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	10114280	3L_10114280_SNP [dm3] 3L_10121180_SNP [dm6]	G	T	3.592e^-4	0.922	INTRON dpr6
3L	17821519	3L_17821519_SNP [dm3] 3L_17828419_SNP [dm6]	C	T	3.598e^-4	0.922	INTRON Grd
X	11152307	X_11152307_SNP [dm3] X_11258274_SNP [dm6]	T	G	3.612e^-4	0.922	INTRON CG44422
2L	22275835	2L_22275835_SNP [dm3] 2L_22275835_SNP [dm6]	C	T	3.614e^-4	0.922	INTERGENIC
2R	16916655	2R_16916655_SNP [dm3] 2R_21029150_SNP [dm6]	A	G	3.617e^-4	0.922	DOWNSTREAM CR45148 INTERGENIC
X	10134034	X_10134034_SNP [dm3] X_10240001_SNP [dm6]	T	C	3.622e^-4	0.922	INTRON Hk
X	10134036	X_10134036_SNP [dm3] X_10240003_SNP [dm6]	T	C	3.622e^-4	0.922	INTRON Hk
X	10134052	X_10134052_SNP [dm3] X_10240019_SNP [dm6]	A	G	3.622e^-4	0.922	INTRON Hk
X	13330123	X_13330123_SNP [dm3] X_13436090_SNP [dm6]	C	T	3.628e^-4	0.922	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	13287993	2L_13287993_SNP [dm3] 2L_13287993_SNP [dm6]	C	A	3.632e^-4	0.922	NON_SYNONYMOUS_CODING Uvrag DOWNSTREAM CR44972
2R	8715265	2R_8715265_SNP [dm3] 2R_12827760_SNP [dm6]	T	C	3.634e^-4	0.922	INTERGENIC
3L	1551353	3L_1551353_SNP [dm3] 3L_1551353_SNP [dm6]	T	C	3.642e^-4	0.923	INTRON Cct1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16093645	2L_16093645_SNP [dm3] 2L_16093645_SNP [dm6]	C	T	3.650e^-4	0.924	INTERGENIC
2R	18285062	2R_18285062_SNP [dm3] 2R_22397557_SNP [dm6]	G	T	3.664e^-4	0.926	INTRON babos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23430904	3R_23430904_SNP [dm3] 3R_27605182_SNP [dm6]	C	G	3.678e^-4	0.928	INTRON dsd	TF binding site mE1_TFBS_cad
2L	9104918	2L_9104918_SNP [dm3] 2L_9104918_SNP [dm6]	C	A	3.685e^-4	0.928	INTERGENIC
2R	11215560	2R_11215560_SNP [dm3] 2R_15328055_SNP [dm6]	G	A	3.694e^-4	0.929	NON_SYNONYMOUS_CODING CG8160
2R	5679758	2R_5679758_SNP [dm3] 2R_9792253_SNP [dm6]	A	G	3.696e^-4	0.929	DOWNSTREAM CR44208 INTRON CG1688
3R	25278060	3R_25278060_SNP [dm3] 3R_29452338_SNP [dm6]	C	T	3.706e^-4	0.929	INTRON Ptp99A
2L	16930551	2L_16930551_SNP [dm3] 2L_16930551_SNP [dm6]	T	A	3.715e^-4	0.929	INTERGENIC
3L	8594017	3L_8594017_SNP [dm3] 3L_8600917_SNP [dm6]	T	C	3.720e^-4	0.929	UPSTREAM RpL14 & 2 others INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8594023	3L_8594023_SNP [dm3] 3L_8600923_SNP [dm6]	A	C	3.720e^-4	0.929	UPSTREAM RpL14 & 2 others INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20370806	3L_20370806_SNP [dm3] 3L_20377706_SNP [dm6]	A	G	3.730e^-4	0.929	UPSTREAM RhoBTB INTRON RhoBTB
2R	18639941	2R_18639941_SNP [dm3] 2R_22752436_SNP [dm6]	C	T	3.732e^-4	0.929	INTRON CG42260
2L	13414791	2L_13414791_SNP [dm3] 2L_13414791_SNP [dm6]	A	G	3.751e^-4	0.929	UPSTREAM CG42784 & 2 others INTERGENIC
3R	25982142	3R_25982142_SNP [dm3] 3R_30156420_SNP [dm6]	T	C	3.785e^-4	0.929	UTR_5_PRIME CG11498	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	14661306	2L_14661306_SNP [dm3] 2L_14661306_SNP [dm6]	T	A	3.786e^-4	0.929	INTRON osp
3L	8559200	3L_8559200_SNP [dm3] 3L_8566100_SNP [dm6]	T	C	3.789e^-4	0.929	SYNONYMOUS_CODING rhea UTR_3_PRIME rhea	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	25367062	3R_25367062_DEL [dm3] 3R_29541340_DEL [dm6]	CTCGAGTGC	C	3.791e^-4	0.929	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2R	17000534	2R_17000534_SNP [dm3] 2R_21113029_SNP [dm6]	T	A	3.793e^-4	0.929	INTRON ktub
2R	17846570	2R_17846570_INS [dm3] 2R_21959065_INS [dm6]	G	GG	3.794e^-4	0.929	INTERGENIC
2L	7200153	2L_7200153_SNP [dm3] 2L_7200153_SNP [dm6]	G	A	3.794e^-4	0.929	INTRON CG4502	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1182815	2L_1182815_SNP [dm3] 2L_1182815_SNP [dm6]	A	G	3.800e^-4	0.929	SYNONYMOUS_CODING CG5126 DOWNSTREAM CG4896	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	16182161	2R_16182161_SNP [dm3] 2R_20294656_SNP [dm6]	C	T	3.810e^-4	0.929	EXON CR44639
2R	16369354	2R_16369354_SNP [dm3] 2R_20481849_SNP [dm6]	T	C	3.810e^-4	0.929	INTERGENIC
3R	13663367	3R_13663367_SNP [dm3] 3R_17837645_SNP [dm6]	A	C	3.811e^-4	0.929	INTRON tinc
3R	13663373	3R_13663373_SNP [dm3] 3R_17837651_SNP [dm6]	G	A	3.811e^-4	0.929	INTRON tinc
3L	18697360	3L_18697360_SNP [dm3] 3L_18704260_SNP [dm6]	C	T	3.814e^-4	0.929	INTERGENIC
2L	12483887	2L_12483887_SNP [dm3] 2L_12483887_SNP [dm6]	A	G	3.827e^-4	0.929	UPSTREAM bun INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	12483888	2L_12483888_SNP [dm3] 2L_12483888_SNP [dm6]	C	T	3.827e^-4	0.929	UPSTREAM bun INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	20301944	X_20301944_SNP [dm3] X_20430917_SNP [dm6]	A	C	3.827e^-4	0.929	NON_SYNONYMOUS_CODING mal
3R	12411027	3R_12411027_SNP [dm3] 3R_16585305_SNP [dm6]	G	A	3.832e^-4	0.929	INTERGENIC
X	17610189	X_17610189_SNP [dm3] X_17716156_SNP [dm6]	G	A	3.832e^-4	0.929	INTRON CG42684
2L	8888176	2L_8888176_SNP [dm3] 2L_8888176_SNP [dm6]	T	C	3.835e^-4	0.929	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3R	14934794	3R_14934794_SNP [dm3] 3R_19109072_SNP [dm6]	A	G	3.836e^-4	0.929	INTRON CG6040
3L	6895893	3L_6895893_SNP [dm3] 3L_6902793_SNP [dm6]	T	A	3.847e^-4	0.93	INTERGENIC
3L	4487887	3L_4487887_SNP [dm3] 3L_4487887_SNP [dm6]	A	G	3.849e^-4	0.93	INTRON CG13722
X	15105650	X_15105650_DEL [dm3] X_15211617_DEL [dm6]	AA	T	3.855e^-4	0.93	DOWNSTREAM CG5662 INTERGENIC
2R	18639949	2R_18639949_SNP [dm3] 2R_22752444_SNP [dm6]	T	G	3.872e^-4	0.932	INTRON CG42260
2R	9182241	2R_9182241_SNP [dm3] 2R_13294736_SNP [dm6]	T	G	3.874e^-4	0.932	INTRON Dh31-R
2L	9446940	2L_9446940_SNP [dm3] 2L_9446940_SNP [dm6]	G	A	3.895e^-4	0.934	INTRON numb	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2L	9446969	2L_9446969_DEL [dm3] 2L_9446969_DEL [dm6]	AACTGCTTTA	A	3.895e^-4	0.934	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
X	16878199	X_16878199_SNP [dm3] X_16984166_SNP [dm6]	A	T	3.913e^-4	0.934	INTRON CG45002
X	15302826	X_15302826_SNP [dm3] X_15408793_SNP [dm6]	A	T	3.921e^-4	0.934	INTRON Cngl	transposable element FlyBase
X	19018866	X_19018866_SNP [dm3] X_19124833_SNP [dm6]	C	G	3.921e^-4	0.934	UPSTREAM CG15882 DOWNSTREAM tgy INTERGENIC
3L	12862234	3L_12862234_SNP [dm3] 3L_12869134_SNP [dm6]	C	A	3.928e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10246737	3L_10246737_SNP [dm3] 3L_10253637_SNP [dm6]	C	G	3.938e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	18451774	3L_18451774_SNP [dm3] 3L_18458674_SNP [dm6]	A	G	3.962e^-4	0.934	DOWNSTREAM CG32196 INTERGENIC
2L	13287398	2L_13287398_SNP [dm3] 2L_13287398_SNP [dm6]	G	A	3.971e^-4	0.934	SYNONYMOUS_CODING Uvrag UPSTREAM Drep-4 DOWNSTREAM CR44083 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13287399	2L_13287399_SNP [dm3] 2L_13287399_SNP [dm6]	C	T	3.971e^-4	0.934	SYNONYMOUS_CODING Uvrag UPSTREAM Drep-4 DOWNSTREAM CR44083 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6895059	3L_6895059_DEL [dm3] 3L_6901959_DEL [dm6]	TT	T	3.971e^-4	0.934	INTERGENIC
2R	12056863	2R_12056863_SNP [dm3] 2R_16169358_SNP [dm6]	G	T	3.974e^-4	0.934	UTR_3_PRIME lbk DOWNSTREAM CG8435
2R	19353938	2R_19353938_SNP [dm3] 2R_23466415_SNP [dm6]	T	A	3.985e^-4	0.934	INTRON CG43795
3L	2615924	3L_2615924_SNP [dm3] 3L_2615924_SNP [dm6]	A	G	3.998e^-4	0.934	INTRON Pxn	TF binding site mE1_TFBS_chinmo
X	11151905	X_11151905_SNP [dm3] X_11257872_SNP [dm6]	T	C	3.998e^-4	0.934	INTRON CG44422	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	11151921	X_11151921_SNP [dm3] X_11257888_SNP [dm6]	A	G	3.998e^-4	0.934	INTRON CG44422	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9238809	3L_9238809_SNP [dm3] 3L_9245709_SNP [dm6]	A	T	3.999e^-4	0.934	INTERGENIC
2L	7823890	2L_7823890_SNP [dm3] 2L_7823890_SNP [dm6]	G	A	4.001e^-4	0.934	SYNONYMOUS_CODING CG7115
2L	4424729	2L_4424729_SNP [dm3] 2L_4424729_SNP [dm6]	A	C	4.001e^-4	0.934	INTRON CG15431
X	11559316	X_11559316_SNP [dm3] X_11665283_SNP [dm6]	T	A	4.011e^-4	0.934	INTRON Ptp10D
X	11559318	X_11559318_SNP [dm3] X_11665285_SNP [dm6]	C	A	4.011e^-4	0.934	INTRON Ptp10D
X	11559321	X_11559321_INS [dm3] X_11665288_INS [dm6]	T	TTAAT	4.011e^-4	0.934	INTRON Ptp10D
X	11559329	X_11559329_SNP [dm3] X_11665296_SNP [dm6]	A	G	4.048e^-4	0.934	INTRON Ptp10D
3L	4487311	3L_4487311_SNP [dm3] 3L_4487311_SNP [dm6]	C	G	4.053e^-4	0.934	SYNONYMOUS_CODING CG13722
2R	16758224	2R_16758224_SNP [dm3] 2R_20870719_SNP [dm6]	T	A	4.053e^-4	0.934	UPSTREAM Ipk1 DOWNSTREAM IM14 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3L	5080609	3L_5080609_SNP [dm3] 3L_5080609_SNP [dm6]	T	G	4.062e^-4	0.934	INTERGENIC
2R	3495388	2R_3495388_SNP [dm3] 2R_7607883_SNP [dm6]	G	C	4.068e^-4	0.934	INTRON CG1358
3L	8029081	3L_8029081_SNP [dm3] 3L_8035981_SNP [dm6]	G	A	4.071e^-4	0.934	INTRON nmo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12521475	3L_12521475_SNP [dm3] 3L_12528375_SNP [dm6]	A	G	4.079e^-4	0.934	SYNONYMOUS_CODING nst	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12521481	3L_12521481_SNP [dm3] 3L_12528381_SNP [dm6]	G	C	4.079e^-4	0.934	SYNONYMOUS_CODING nst	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19567035	2L_19567035_SNP [dm3] 2L_19567035_SNP [dm6]	T	G	4.079e^-4	0.934	SYNONYMOUS_CODING CG13077 DOWNSTREAM spi
2R	19982505	2R_19982505_SNP [dm3] 2R_24094982_SNP [dm6]	C	T	4.092e^-4	0.934	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	7915562	X_7915562_SNP [dm3] X_8021529_SNP [dm6]	C	T	4.103e^-4	0.934	UPSTREAM CG15333 INTRON Tbh
2L	8399582	2L_8399582_SNP [dm3] 2L_8399582_SNP [dm6]	C	T	4.108e^-4	0.934	SYNONYMOUS_CODING CG13386 UPSTREAM CG31898	TF binding site mE1_TFBS_chinmo
2L	14241114	2L_14241114_INS [dm3] 2L_14241114_INS [dm6]	T	TTAT	4.112e^-4	0.934	UPSTREAM CR44216 INTRON CR44216
X	8176999	X_8176999_SNP [dm3] X_8282966_SNP [dm6]	A	G	4.114e^-4	0.934	SYNONYMOUS_CODING nAChRalpha3
2R	17903500	2R_17903500_SNP [dm3] 2R_22015995_SNP [dm6]	G	C	4.116e^-4	0.934	INTRON CG34370
3R	14812664	3R_14812664_INS [dm3] 3R_18986942_INS [dm6]	A	AA	4.118e^-4	0.934	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11559255	X_11559255_SNP [dm3] X_11665222_SNP [dm6]	A	G	4.136e^-4	0.934	INTRON Ptp10D
X	11559257	X_11559257_SNP [dm3] X_11665224_SNP [dm6]	A	T	4.136e^-4	0.934	INTRON Ptp10D
X	11559267	X_11559267_SNP [dm3] X_11665234_SNP [dm6]	G	A	4.136e^-4	0.934	INTRON Ptp10D
X	11559280	X_11559280_SNP [dm3] X_11665247_SNP [dm6]	T	A	4.136e^-4	0.934	INTRON Ptp10D
3L	20605352	3L_20605352_SNP [dm3] 3L_20612252_SNP [dm6]	A	G	4.139e^-4	0.934	INTRON knrl	regulatory region REDfly_CRMs
2L	16927648	2L_16927648_SNP [dm3] 2L_16927648_SNP [dm6]	A	G	4.141e^-4	0.934	INTERGENIC
X	19275875	X_19275875_SNP [dm3] X_19381842_SNP [dm6]	A	C	4.142e^-4	0.934	INTRON kek5
3L	15703870	3L_15703870_SNP [dm3] 3L_15710770_SNP [dm6]	T	A	4.142e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2L	677019	2L_677019_DEL [dm3] 2L_677019_DEL [dm6]	TCT	T	4.142e^-4	0.934	INTRON ds	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	3607802	3L_3607802_SNP [dm3] 3L_3607802_SNP [dm6]	T	C	4.146e^-4	0.934	UTR_3_PRIME Eip63E
3L	16919041	3L_16919041_SNP [dm3] 3L_16925941_SNP [dm6]	C	G	4.151e^-4	0.934	NON_SYNONYMOUS_CODING CG13023	TF binding site mE1_TFBS_chinmo
X	5704094	X_5704094_SNP [dm3] X_5810061_SNP [dm6]	T	C	4.155e^-4	0.934	UTR_3_PRIME Prosbeta2R1 UPSTREAM CR45529
2R	8891095	2R_8891095_SNP [dm3] 2R_13003590_SNP [dm6]	A	C	4.164e^-4	0.934	SYNONYMOUS_CODING Su_z_2	TF binding site mE1_TFBS_chinmo
3L	8245752	3L_8245752_INS [dm3] 3L_8252652_INS [dm6]	C	CACTCCTGTATTCC...	4.170e^-4	0.934	INTRON Dscam4
2L	9346982	2L_9346982_SNP [dm3] 2L_9346982_SNP [dm6]	A	G	4.172e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	10452935	2L_10452935_SNP [dm3] 2L_10452935_SNP [dm6]	T	C	4.173e^-4	0.934	SYNONYMOUS_CODING CG5322 UPSTREAM ppk10
3L	1566294	3L_1566294_SNP [dm3] 3L_1566294_SNP [dm6]	G	A	4.181e^-4	0.934	SYNONYMOUS_CODING CG12003 INTRON CG7879	TF binding site mE1_TFBS_sens
3L	1566300	3L_1566300_SNP [dm3] 3L_1566300_SNP [dm6]	C	A	4.181e^-4	0.934	SYNONYMOUS_CODING CG12003 INTRON CG7879	TF binding site mE1_TFBS_sens
X	16454407	X_16454407_SNP [dm3] X_16560374_SNP [dm6]	G	A	4.195e^-4	0.934	UPSTREAM Pp2B-14D DOWNSTREAM CanA-14F INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	16457924	3L_16457924_SNP [dm3] 3L_16464824_SNP [dm6]	T	A	4.196e^-4	0.934	INTRON CG33158
3R	7957474	3R_7957474_SNP [dm3] 3R_12131752_SNP [dm6]	G	A	4.199e^-4	0.934	DOWNSTREAM tRNA:K5:87BC INTERGENIC
X	5468501	X_5468501_SNP [dm3] X_5574468_SNP [dm6]	C	T	4.202e^-4	0.934	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10940261	3R_10940261_SNP [dm3] 3R_15114539_SNP [dm6]	T	A	4.210e^-4	0.934	INTRON CG42788
2R	18239057	2R_18239057_SNP [dm3] 2R_22351552_SNP [dm6]	G	A	4.210e^-4	0.934	INTRON Liprin-gamma
2R	18239062	2R_18239062_SNP [dm3] 2R_22351557_SNP [dm6]	C	T	4.210e^-4	0.934	INTRON Liprin-gamma
3L	8766416	3L_8766416_SNP [dm3] 3L_8773316_SNP [dm6]	T	C	4.210e^-4	0.934	INTRON Fhos	TF binding site BDTNP1_TFBS_prd
3R	12070942	3R_12070942_SNP [dm3] 3R_16245220_SNP [dm6]	A	G	4.214e^-4	0.934	INTRON tara	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	1367534	2L_1367534_SNP [dm3] 2L_1367534_SNP [dm6]	C	T	4.220e^-4	0.934	UPSTREAM CG14346 INTERGENIC
2L	21961002	2L_21961002_SNP [dm3] 2L_21961002_SNP [dm6]	T	A	4.236e^-4	0.936	INTERGENIC
3R	8615627	3R_8615627_SNP [dm3] 3R_12789905_SNP [dm6]	C	T	4.252e^-4	0.938	INTERGENIC
2L	2964126	2L_2964126_SNP [dm3] 2L_2964126_SNP [dm6]	C	T	4.258e^-4	0.938	UTR_3_PRIME Rbp9	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	13663410	3R_13663410_SNP [dm3] 3R_17837688_SNP [dm6]	A	T	4.260e^-4	0.938	INTRON tinc
3L	4668002	3L_4668002_SNP [dm3] 3L_4668002_SNP [dm6]	A	G	4.269e^-4	0.938	UPSTREAM CG32236 INTRON axo	TF binding site BDTNP1_TFBS_twi
3L	1411037	3L_1411037_SNP [dm3] 3L_1411037_SNP [dm6]	T	G	4.295e^-4	0.938	UPSTREAM CG9168 INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7082104	3L_7082104_SNP [dm3] 3L_7089004_SNP [dm6]	A	C	4.300e^-4	0.938	UPSTREAM Cpr65Eb INTERGENIC
X	4060730	X_4060730_DEL [dm3] X_4166697_DEL [dm6]	AAACAAAG	T	4.304e^-4	0.938	INTRON Fas2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10475147	2L_10475147_SNP [dm3] 2L_10475147_SNP [dm6]	A	G	4.308e^-4	0.938	UPSTREAM RluA-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12994703	2R_12994703_SNP [dm3] 2R_17107198_SNP [dm6]	C	T	4.311e^-4	0.938	UTR_3_PRIME CG30456	TF binding site mE1_TFBS_cad
X	13306051	X_13306051_SNP [dm3] X_13412018_SNP [dm6]	G	A	4.311e^-4	0.938	UPSTREAM CG1998 INTRON CG1998	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	13306082	X_13306082_DEL [dm3] X_13412049_DEL [dm6]	AAAAAAA	A	4.311e^-4	0.938	UPSTREAM CG1998 INTRON CG1998	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	13306123	X_13306123_SNP [dm3] X_13412090_SNP [dm6]	T	A	4.311e^-4	0.938	UPSTREAM CG1998 INTRON CG1998	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	6909964	3L_6909964_SNP [dm3] 3L_6916864_SNP [dm6]	C	T	4.313e^-4	0.938	INTERGENIC
3R	14449216	3R_14449216_SNP [dm3] 3R_18623494_SNP [dm6]	G	A	4.332e^-4	0.941	INTRON qin	TF binding site mE1_TFBS_inv
X	11559266	X_11559266_SNP [dm3] X_11665233_SNP [dm6]	T	G	4.342e^-4	0.941	INTRON Ptp10D
2R	19109732	2R_19109732_SNP [dm3] 2R_23222209_SNP [dm6]	C	T	4.343e^-4	0.941	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16987221	X_16987221_SNP [dm3] X_17093188_SNP [dm6]	C	A	4.359e^-4	0.942	INTRON CG16700 & 1 other
X	5206747	X_5206747_SNP [dm3] X_5312714_SNP [dm6]	C	A	4.369e^-4	0.942	SYNONYMOUS_CODING dhd UPSTREAM TrxT & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3260907	3L_3260907_SNP [dm3] 3L_3260907_SNP [dm6]	C	T	4.373e^-4	0.942	INTRON ckd
2L	1656531	2L_1656531_SNP [dm3] 2L_1656531_SNP [dm6]	T	A	4.374e^-4	0.942	INTRON chinmo	TF binding site BDTNP1_TFBS_dl
3L	4129910	3L_4129910_INS [dm3] 3L_4129910_INS [dm6]	T	TA	4.389e^-4	0.942	INTRON ens
X	14605476	X_14605476_SNP [dm3] X_14711443_SNP [dm6]	G	C	4.399e^-4	0.942	INTRON NetB
X	11282419	X_11282419_SNP [dm3] X_11388386_SNP [dm6]	T	C	4.403e^-4	0.942	UTR_3_PRIME dlg1 INTRON dlg1
3R	11195630	3R_11195630_SNP [dm3] 3R_15369908_SNP [dm6]	T	G	4.410e^-4	0.942	UTR_5_PRIME CG14868 DOWNSTREAM CG6136
3R	11195631	3R_11195631_SNP [dm3] 3R_15369909_SNP [dm6]	T	C	4.410e^-4	0.942	UTR_5_PRIME CG14868 DOWNSTREAM CG6136
2L	4476672	2L_4476672_SNP [dm3] 2L_4476672_SNP [dm6]	G	A	4.419e^-4	0.942	UTR_5_PRIME ine DOWNSTREAM dp INTRON ine
3L	4482748	3L_4482748_INS [dm3] 3L_4482748_INS [dm6]	G	GG	4.424e^-4	0.942	UPSTREAM CG11350 INTERGENIC
X	4062359	X_4062359_SNP [dm3] X_4168326_SNP [dm6]	A	G	4.427e^-4	0.942	INTRON Fas2	TF binding site mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
X	11559308	X_11559308_SNP [dm3] X_11665275_SNP [dm6]	T	C	4.436e^-4	0.942	INTRON Ptp10D
X	11559335	X_11559335_SNP [dm3] X_11665302_SNP [dm6]	C	T	4.436e^-4	0.942	INTRON Ptp10D
2L	22558409	2L_22558409_SNP [dm3] 2L_22665677_SNP [dm6]	A	G	4.440e^-4	0.942	INTRON CG40006
2L	5446284	2L_5446284_SNP [dm3] 2L_5446284_SNP [dm6]	C	T	4.445e^-4	0.942	INTERGENIC
X	9060456	X_9060456_INS [dm3] X_9166423_INS [dm6]	C	CC	4.456e^-4	0.942	UTR_5_PRIME mei-P26	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA
X	9060460	X_9060460_SNP [dm3] X_9166427_SNP [dm6]	A	T	4.456e^-4	0.942	UTR_5_PRIME mei-P26	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA
X	9060461	X_9060461_SNP [dm3] X_9166428_SNP [dm6]	A	T	4.456e^-4	0.942	UTR_5_PRIME mei-P26	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA
X	9060466	X_9060466_INS [dm3] X_9166433_INS [dm6]	T	TC	4.456e^-4	0.942	UTR_5_PRIME mei-P26	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA
2R	5300870	2R_5300870_SNP [dm3] 2R_9413365_SNP [dm6]	A	G	4.457e^-4	0.942	UTR_5_PRIME wun UPSTREAM wun2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
X	11589138	X_11589138_SNP [dm3] X_11695105_SNP [dm6]	C	T	4.463e^-4	0.943	UPSTREAM PhKgamma DOWNSTREAM bif INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2R	19668908	2R_19668908_SNP [dm3] 2R_23781385_SNP [dm6]	G	T	4.476e^-4	0.944	INTRON CG9850
2R	10808482	2R_10808482_SNP [dm3] 2R_14920977_SNP [dm6]	T	A	4.484e^-4	0.944	INTRON CG10249
2L	9447125	2L_9447125_SNP [dm3] 2L_9447125_SNP [dm6]	T	G	4.504e^-4	0.944	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
X	16985074	X_16985074_SNP [dm3] X_17091041_SNP [dm6]	T	A	4.509e^-4	0.944	UPSTREAM CG16700 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10792795	2R_10792795_SNP [dm3] 2R_14905290_SNP [dm6]	C	T	4.522e^-4	0.944	SYNONYMOUS_CODING CG10249	TF binding site mE1_TFBS_chinmo
X	16454217	X_16454217_SNP [dm3] X_16560184_SNP [dm6]	C	G	4.524e^-4	0.944	UPSTREAM Pp2B-14D DOWNSTREAM CanA-14F INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	16454220	X_16454220_SNP [dm3] X_16560187_SNP [dm6]	T	G	4.524e^-4	0.944	UPSTREAM Pp2B-14D DOWNSTREAM CanA-14F INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	16454224	X_16454224_SNP [dm3] X_16560191_SNP [dm6]	A	C	4.524e^-4	0.944	UPSTREAM Pp2B-14D DOWNSTREAM CanA-14F INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	25531792	3R_25531792_SNP [dm3] 3R_29706070_SNP [dm6]	C	T	4.526e^-4	0.944	INTERGENIC
3L	5666851	3L_5666851_SNP [dm3] 3L_5673751_SNP [dm6]	G	A	4.529e^-4	0.944	INTRON sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5666930	3L_5666930_SNP [dm3] 3L_5673830_SNP [dm6]	T	C	4.529e^-4	0.944	SYNONYMOUS_CODING sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9730954	2L_9730954_SNP [dm3] 2L_9730954_SNP [dm6]	T	A	4.533e^-4	0.944	DOWNSTREAM CG13116 INTRON Nckx30C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
X	11222201	X_11222201_SNP [dm3] X_11328168_SNP [dm6]	G	A	4.542e^-4	0.944	SYNONYMOUS_CODING CG1657	TF binding site mE1_TFBS_chinmo
3R	10954044	3R_10954044_SNP [dm3] 3R_15128322_SNP [dm6]	T	A	4.543e^-4	0.944	INTRON CG42788
X	11282380	X_11282380_SNP [dm3] X_11388347_SNP [dm6]	C	G	4.562e^-4	0.946	UTR_3_PRIME dlg1 INTRON dlg1
3L	3263840	3L_3263840_SNP [dm3] 3L_3263840_SNP [dm6]	G	A	4.570e^-4	0.946	INTRON ckd
3L	3263841	3L_3263841_DEL [dm3] 3L_3263841_DEL [dm6]	TTTTGATCAAGAGGGATAGA...	T	4.570e^-4	0.946	INTRON ckd
2R	17608172	2R_17608172_SNP [dm3] 2R_21720667_SNP [dm6]	C	G	4.578e^-4	0.946	UPSTREAM LBR & 1 other INTRON LBR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2R	15674916	2R_15674916_SNP [dm3] 2R_19787411_SNP [dm6]	G	A	4.585e^-4	0.946	EXON CR45231
2R	12139867	2R_12139867_SNP [dm3] 2R_16252362_SNP [dm6]	C	T	4.588e^-4	0.946	INTRON CngA
3L	8559197	3L_8559197_SNP [dm3] 3L_8566097_SNP [dm6]	A	G	4.590e^-4	0.946	SYNONYMOUS_CODING rhea UTR_3_PRIME rhea	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	11773007	3L_11773007_SNP [dm3] 3L_11779907_SNP [dm6]	G	A	4.600e^-4	0.946	NON_SYNONYMOUS_CODING CG14131 INTRON Pi3K68D	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	20361387	3R_20361387_SNP [dm3] 3R_24535665_SNP [dm6]	A	G	4.601e^-4	0.946	NON_SYNONYMOUS_CODING ana1 DOWNSTREAM CG5789
2R	7718257	2R_7718257_SNP [dm3] 2R_11830752_SNP [dm6]	G	A	4.610e^-4	0.946	INTRON Sobp
2R	13800618	2R_13800618_SNP [dm3] 2R_17913113_SNP [dm6]	T	C	4.622e^-4	0.946	INTRON Elk
X	1511113	X_1511113_SNP [dm3] X_1617080_SNP [dm6]	C	T	4.624e^-4	0.946	INTRON br & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	12173123	2R_12173123_SNP [dm3] 2R_16285618_SNP [dm6]	G	C	4.628e^-4	0.946	NON_SYNONYMOUS_CODING CG9068 DOWNSTREAM CR43728
3L	4485583	3L_4485583_SNP [dm3] 3L_4485583_SNP [dm6]	G	C	4.645e^-4	0.946	SYNONYMOUS_CODING CG13722	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11003411	3R_11003411_SNP [dm3] 3R_15177689_SNP [dm6]	G	T	4.652e^-4	0.946	UTR_3_PRIME Mf INTRON Gyc88E & 1 other
2L	1107210	2L_1107210_SNP [dm3] 2L_1107210_SNP [dm6]	T	A	4.652e^-4	0.946	NON_SYNONYMOUS_CODING mtRNApol	TF binding site mE1_TFBS_sens
X	16410486	X_16410486_SNP [dm3] X_16516453_SNP [dm6]	G	A	4.654e^-4	0.946	INTRON para
3L	16018835	3L_16018835_SNP [dm3] 3L_16025735_SNP [dm6]	T	A	4.660e^-4	0.946	INTRON Notum	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	10651707	3L_10651707_SNP [dm3] 3L_10658607_SNP [dm6]	C	A	4.663e^-4	0.946	INTRON CG32066	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	10475176	2L_10475176_SNP [dm3] 2L_10475176_SNP [dm6]	C	A	4.671e^-4	0.946	UPSTREAM RluA-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3951891	3L_3951891_SNP [dm3] 3L_3951891_SNP [dm6]	A	G	4.673e^-4	0.946	INTRON CG14984	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13565493	3R_13565493_SNP [dm3] 3R_17739771_SNP [dm6]	C	A	4.676e^-4	0.946	UTR_5_PRIME TyrRII INTRON TyrRII
2R	15018631	2R_15018631_SNP [dm3] 2R_19131126_SNP [dm6]	A	G	4.679e^-4	0.946	SYNONYMOUS_CODING botv	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12484021	2L_12484021_SNP [dm3] 2L_12484021_SNP [dm6]	T	G	4.681e^-4	0.946	UPSTREAM bun INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3R	13902722	3R_13902722_SNP [dm3] 3R_18077000_SNP [dm6]	G	A	4.685e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	9487006	3L_9487006_INS [dm3] 3L_9493906_INS [dm6]	A	ATGGCCCAA	4.688e^-4	0.946	DOWNSTREAM path INTERGENIC
3L	1927752	3L_1927752_SNP [dm3] 3L_1927752_SNP [dm6]	C	G	4.709e^-4	0.947	INTRON Dbx	TF binding site mE1_TFBS_chinmo
2L	1654718	2L_1654718_SNP [dm3] 2L_1654718_SNP [dm6]	A	T	4.711e^-4	0.947	INTRON chinmo
2L	1199855	2L_1199855_SNP [dm3] 2L_1199855_SNP [dm6]	A	C	4.716e^-4	0.947	UTR_3_PRIME CG43348 UPSTREAM CG43349 & 2 others DOWNSTREAM CG43348
2R	10001895	2R_10001895_SNP [dm3] 2R_14114390_SNP [dm6]	A	T	4.723e^-4	0.947	INTRON Prosap	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	17317819	X_17317819_SNP [dm3] X_17423786_SNP [dm6]	T	A	4.744e^-4	0.947	SYNONYMOUS_CODING CG5613 INTRON CG12994	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
X	17317978	X_17317978_INS [dm3] X_17423945_INS [dm6]	T	TG	4.744e^-4	0.947	INTRON CG12994 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16240342	2R_16240342_SNP [dm3] 2R_20352837_SNP [dm6]	A	G	4.751e^-4	0.947	INTERGENIC
3L	4487347	3L_4487347_SNP [dm3] 3L_4487347_SNP [dm6]	G	A	4.767e^-4	0.947	SYNONYMOUS_CODING CG13722
2L	15635071	2L_15635071_SNP [dm3] 2L_15635071_SNP [dm6]	A	G	4.775e^-4	0.947	DOWNSTREAM CG18480 INTERGENIC
2L	10468944	2L_10468944_SNP [dm3] 2L_10468944_SNP [dm6]	C	T	4.779e^-4	0.947	INTRON RluA-1
3L	4487248	3L_4487248_SNP [dm3] 3L_4487248_SNP [dm6]	A	G	4.781e^-4	0.947	SYNONYMOUS_CODING CG13722
X	8716069	X_8716069_DEL [dm3] X_8822036_DEL [dm6]	GT	G	4.783e^-4	0.947	INTERGENIC
X	21362118	X_21362118_SNP [dm3] X_21491091_SNP [dm6]	G	C	4.783e^-4	0.947	INTERGENIC
2L	14017817	2L_14017817_DEL [dm3] 2L_14017817_DEL [dm6]	ATTTATTGCTGACAGAAAAT...	A	4.808e^-4	0.947	INTRON bgm
2R	12895088	2R_12895088_SNP [dm3] 2R_17007583_SNP [dm6]	A	G	4.810e^-4	0.947	DOWNSTREAM Ehbp1 & 1 other INTERGENIC
3L	11536419	3L_11536419_SNP [dm3] 3L_11543319_SNP [dm6]	T	C	4.820e^-4	0.947	INTRON Mob2
X	16792729	X_16792729_DEL [dm3] X_16898696_DEL [dm6]	GGTCG	G	4.832e^-4	0.947	INTERGENIC
2L	443435	2L_443435_SNP [dm3] 2L_443435_SNP [dm6]	T	C	4.845e^-4	0.947	SYNONYMOUS_CODING ex
2L	7682229	2L_7682229_SNP [dm3] 2L_7682229_SNP [dm6]	C	T	4.854e^-4	0.947	SYNONYMOUS_CODING Myo28B1	TF binding site mE1_TFBS_sens
2L	14708231	2L_14708231_SNP [dm3] 2L_14708231_SNP [dm6]	T	A	4.863e^-4	0.947	INTERGENIC
2R	3208063	2R_3208063_SNP [dm3] 2R_7320558_SNP [dm6]	C	T	4.868e^-4	0.947	UTR_3_PRIME Dscam1
3L	3601332	3L_3601332_SNP [dm3] 3L_3601332_SNP [dm6]	G	A	4.875e^-4	0.947	INTRON Eip63E
X	12635854	X_12635854_SNP [dm3] X_12741821_SNP [dm6]	T	A	4.880e^-4	0.947	UPSTREAM CR45623 INTRON Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9895092	2R_9895092_SNP [dm3] 2R_14007587_SNP [dm6]	T	C	4.881e^-4	0.947	INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3L	5072076	3L_5072076_SNP [dm3] 3L_5072076_SNP [dm6]	A	T	4.884e^-4	0.947	INTRON Con
2L	9804537	2L_9804537_SNP [dm3] 2L_9804537_SNP [dm6]	A	C	4.890e^-4	0.947	INTRON nAChRalpha6
2L	9804538	2L_9804538_SNP [dm3] 2L_9804538_SNP [dm6]	T	A	4.890e^-4	0.947	INTRON nAChRalpha6
2L	2312408	2L_2312408_SNP [dm3] 2L_2312408_SNP [dm6]	T	C	4.892e^-4	0.947	INTRON CG9967 & 1 other
3L	7109947	3L_7109947_SNP [dm3] 3L_7116847_SNP [dm6]	A	G	4.916e^-4	0.947	INTRON form3
X	4935378	X_4935378_SNP [dm3] X_5041345_SNP [dm6]	G	A	4.924e^-4	0.947	INTRON CR44833	regulatory region REDfly_CRMs
2R	17359864	2R_17359864_DEL [dm3] 2R_21472359_DEL [dm6]	TATATGGCTC	T	4.938e^-4	0.947	INTRON Sdc
2R	17359876	2R_17359876_DEL [dm3] 2R_21472371_DEL [dm6]	ATGCTCCCCAACATTTG...	A	4.938e^-4	0.947	INTRON Sdc
2R	17359894	2R_17359894_SNP [dm3] 2R_21472389_SNP [dm6]	G	A	4.938e^-4	0.947	INTRON Sdc
2L	4373723	2L_4373723_SNP [dm3] 2L_4373723_SNP [dm6]	C	T	4.946e^-4	0.947	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	6771120	X_6771120_SNP [dm3] X_6877087_SNP [dm6]	G	A	4.960e^-4	0.947	NON_SYNONYMOUS_CODING CG43736 DOWNSTREAM CG43736 INTRON CG43736	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12858565	2L_12858565_SNP [dm3] 2L_12858565_SNP [dm6]	A	T	4.961e^-4	0.947	INTERGENIC
2L	12855607	2L_12855607_SNP [dm3] 2L_12855607_SNP [dm6]	G	T	4.964e^-4	0.947	INTERGENIC
2L	12541153	2L_12541153_SNP [dm3] 2L_12541153_SNP [dm6]	A	C	4.966e^-4	0.947	UPSTREAM bun INTRON bun	TF binding site BDTNP1_TFBS_dl
3L	8760774	3L_8760774_SNP [dm3] 3L_8767674_SNP [dm6]	G	A	4.968e^-4	0.947	INTRON Fhos
3L	8760781	3L_8760781_SNP [dm3] 3L_8767681_SNP [dm6]	G	T	4.968e^-4	0.947	INTRON Fhos
2R	11059627	2R_11059627_SNP [dm3] 2R_15172122_SNP [dm6]	C	A	4.979e^-4	0.947	INTRON igl
3R	25327724	3R_25327724_SNP [dm3] 3R_29502002_SNP [dm6]	T	A	4.987e^-4	0.947	SYNONYMOUS_CODING Trc8	TF binding site mE1_TFBS_chinmo
2L	633467	2L_633467_SNP [dm3] 2L_633467_SNP [dm6]	A	G	4.988e^-4	0.947	INTERGENIC
X	19053942	X_19053942_SNP [dm3] X_19159909_SNP [dm6]	A	C	4.999e^-4	0.947	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19054243	X_19054243_INS [dm3] X_19160210_INS [dm6]	T	TGAAATAATTTATTACATCT...	4.999e^-4	0.947	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19054252	X_19054252_SNP [dm3] X_19160219_SNP [dm6]	G	A	4.999e^-4	0.947	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19054715	X_19054715_SNP [dm3] X_19160682_SNP [dm6]	C	T	4.999e^-4	0.947	INTRON RhoGAP18B	TF binding site mE1_TFBS_HSA
2L	4470692	2L_4470692_SNP [dm3] 2L_4470692_SNP [dm6]	T	A	4.999e^-4	0.947	INTRON ine	TF binding site mE1_TFBS_cad
3L	16927495	3L_16927495_DEL [dm3] 3L_16934395_DEL [dm6]	AA	A	5.002e^-4	0.947	INTRON CG11905
3R	26640958	3R_26640958_SNP [dm3] 3R_30815236_SNP [dm6]	C	T	5.007e^-4	0.947	INTRON cindr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18136211	3L_18136211_SNP [dm3] 3L_18143111_SNP [dm6]	T	C	5.007e^-4	0.947	INTRON gk
2L	9383527	2L_9383527_SNP [dm3] 2L_9383527_SNP [dm6]	A	G	5.011e^-4	0.947	INTRON Shawl
3L	3126221	3L_3126221_SNP [dm3] 3L_3126221_SNP [dm6]	T	A	5.013e^-4	0.947	INTRON prominin-like	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	18898119	X_18898119_SNP [dm3] X_19004086_SNP [dm6]	C	T	5.024e^-4	0.947	INTRON CG43759	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sbb
X	9238320	X_9238320_DEL [dm3] X_9344287_DEL [dm6]	AGAAAAA	A	5.032e^-4	0.947	INTRON CG34449
2R	19109438	2R_19109438_SNP [dm3] 2R_23221915_SNP [dm6]	A	T	5.038e^-4	0.947	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19109444	2R_19109444_SNP [dm3] 2R_23221921_SNP [dm6]	T	A	5.038e^-4	0.947	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19110031	2R_19110031_SNP [dm3] 2R_23222508_SNP [dm6]	C	T	5.038e^-4	0.947	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8755230	3L_8755230_SNP [dm3] 3L_8762130_SNP [dm6]	C	G	5.047e^-4	0.947	SYNONYMOUS_CODING Fhos	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	2036509	3L_2036509_SNP [dm3] 3L_2036509_SNP [dm6]	T	C	5.054e^-4	0.947	DOWNSTREAM CG42355 INTERGENIC
3L	2796193	3L_2796193_SNP [dm3] 3L_2796193_SNP [dm6]	G	A	5.057e^-4	0.947	INTRON CG43444	TF binding site mE1_TFBS_inv
3L	10414438	3L_10414438_SNP [dm3] 3L_10421338_SNP [dm6]	C	T	5.059e^-4	0.947	INTERGENIC
2L	10468960	2L_10468960_SNP [dm3] 2L_10468960_SNP [dm6]	C	G	5.073e^-4	0.947	INTRON RluA-1
3L	21767151	3L_21767151_SNP [dm3] 3L_21774051_SNP [dm6]	G	A	5.087e^-4	0.947	UPSTREAM CG42552 INTRON CG42689
3L	8028947	3L_8028947_SNP [dm3] 3L_8035847_SNP [dm6]	G	C	5.087e^-4	0.947	INTRON nmo	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	9315524	X_9315524_SNP [dm3] X_9421491_SNP [dm6]	A	G	5.092e^-4	0.947	INTRON mgl
3L	1431041	3L_1431041_SNP [dm3] 3L_1431041_SNP [dm6]	A	T	5.092e^-4	0.947	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	8770781	3L_8770781_SNP [dm3] 3L_8777681_SNP [dm6]	T	G	5.096e^-4	0.947	INTRON Fhos
X	8871249	X_8871249_SNP [dm3] X_8977216_SNP [dm6]	C	T	5.099e^-4	0.947	DOWNSTREAM CR43836 INTRON rdgA & 1 other
3R	22090652	3R_22090652_SNP [dm3] 3R_26264930_SNP [dm6]	G	T	5.105e^-4	0.947	INTRON CG6154
3R	22090669	3R_22090669_SNP [dm3] 3R_26264947_SNP [dm6]	G	A	5.105e^-4	0.947	INTRON CG6154
2R	5990682	2R_5990682_SNP [dm3] 2R_10103177_SNP [dm6]	G	T	5.113e^-4	0.947	UPSTREAM 14-3-3zeta INTRON 14-3-3zeta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	22513461	3L_22513461_SNP [dm3] 3L_22520361_SNP [dm6]	C	T	5.113e^-4	0.947	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19781346	2R_19781346_SNP [dm3] 2R_23893823_SNP [dm6]	T	C	5.119e^-4	0.947	SYNONYMOUS_CODING Upf3 DOWNSTREAM DNA-ligI	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	12373304	2R_12373304_SNP [dm3] 2R_16485799_SNP [dm6]	T	C	5.119e^-4	0.947	UPSTREAM CG15712 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	12373335	2R_12373335_SNP [dm3] 2R_16485830_SNP [dm6]	T	G	5.119e^-4	0.947	UPSTREAM CG15712 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	7546589	2L_7546589_SNP [dm3] 2L_7546589_SNP [dm6]	T	G	5.122e^-4	0.947	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl
2L	7547299	2L_7547299_SNP [dm3] 2L_7547299_SNP [dm6]	C	T	5.122e^-4	0.947	INTRON RapGAP1
3L	18229161	3L_18229161_SNP [dm3] 3L_18236061_SNP [dm6]	A	G	5.122e^-4	0.947	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18229371	3L_18229371_SNP [dm3] 3L_18236271_SNP [dm6]	C	T	5.122e^-4	0.947	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	4386421	X_4386421_SNP [dm3] X_4492388_SNP [dm6]	A	C	5.122e^-4	0.947	INTRON CR32773	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	11323413	2R_11323413_SNP [dm3] 2R_15435908_SNP [dm6]	A	C	5.132e^-4	0.947	INTRON CG43729
2R	4958092	2R_4958092_SNP [dm3] 2R_9070587_SNP [dm6]	A	G	5.138e^-4	0.947	INTRON ana	TF binding site BDTNP1_TFBS_Med
2L	2264632	2L_2264632_SNP [dm3] 2L_2264632_SNP [dm6]	G	T	5.139e^-4	0.947	SYNONYMOUS_CODING CG34049 DOWNSTREAM CG4270
2L	10706339	2L_10706339_SNP [dm3] 2L_10706339_SNP [dm6]	C	T	5.140e^-4	0.947	UPSTREAM Lip2 INTRON Lip2	TF binding site mE1_TFBS_inv
2R	15317623	2R_15317623_SNP [dm3] 2R_19430118_SNP [dm6]	T	C	5.142e^-4	0.947	SYNONYMOUS_CODING CalpA DOWNSTREAM Fak
3R	22576827	3R_22576827_SNP [dm3] 3R_26751105_SNP [dm6]	C	A	5.147e^-4	0.947	INTERGENIC
2R	4443420	2R_4443420_SNP [dm3] 2R_8555915_SNP [dm6]	G	A	5.149e^-4	0.947	INTERGENIC
2L	7629859	2L_7629859_SNP [dm3] 2L_7629859_SNP [dm6]	C	T	5.160e^-4	0.947	INTERGENIC
3L	6132764	3L_6132764_SNP [dm3] 3L_6139664_SNP [dm6]	C	A	5.170e^-4	0.947	INTRON Cpr65Av
3L	9206541	3L_9206541_SNP [dm3] 3L_9213441_SNP [dm6]	G	A	5.183e^-4	0.947	SYNONYMOUS_CODING CG4476
2L	1367646	2L_1367646_SNP [dm3] 2L_1367646_SNP [dm6]	G	A	5.215e^-4	0.947	UPSTREAM CG14346 INTERGENIC	TF binding site mE1_TFBS_inv
2R	15188758	2R_15188758_DEL [dm3] 2R_19301253_DEL [dm6]	TATGTTTCGCAAACTT...	T	5.225e^-4	0.947	INTRON Tab2	TF binding site mE1_TFBS_inv
3R	11995930	3R_11995930_SNP [dm3] 3R_16170208_SNP [dm6]	C	T	5.228e^-4	0.947	SYNONYMOUS_CODING CG6006	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	12084666	2L_12084666_SNP [dm3] 2L_12084666_SNP [dm6]	C	T	5.250e^-4	0.947	NON_SYNONYMOUS_CODING prd UPSTREAM CR44592	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	8413813	3L_8413813_SNP [dm3] 3L_8420713_SNP [dm6]	G	T	5.250e^-4	0.947	INTRON CG32354	TF binding site BDTNP1_TFBS_dl
3L	8413815	3L_8413815_SNP [dm3] 3L_8420715_SNP [dm6]	G	T	5.250e^-4	0.947	INTRON CG32354	TF binding site BDTNP1_TFBS_dl
2R	11304715	2R_11304715_SNP [dm3] 2R_15417210_SNP [dm6]	A	C	5.251e^-4	0.947	INTRON CG43729
2R	11304730	2R_11304730_SNP [dm3] 2R_15417225_SNP [dm6]	T	A	5.251e^-4	0.947	INTRON CG43729
2R	11304731	2R_11304731_SNP [dm3] 2R_15417226_SNP [dm6]	A	T	5.251e^-4	0.947	INTRON CG43729

Missing results

By genomic position
Variant impact
Gene name

pc_KP_PElem_HS phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results