DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.770e^-6)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.004496
In_3R_K	0.058133

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1831 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

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Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	10396532	3L_10396532_SNP [dm3] 3L_10403432_SNP [dm6]	C	A	2.798e^-7	0.27	INTERGENIC
2L	3985015	2L_3985015_SNP [dm3] 2L_3985015_SNP [dm6]	C	A	2.974e^-7	0.27	INTRON fred
3L	7628925	3L_7628925_SNP [dm3] 3L_7635825_SNP [dm6]	G	A	4.590e^-7	0.278	INTRON CG33275	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4659254	3L_4659254_SNP [dm3] 3L_4659254_SNP [dm6]	A	T	1.323e^-6	0.576	INTRON axo
3L	3493158	3L_3493158_SNP [dm3] 3L_3493158_SNP [dm6]	T	C	2.309e^-6	0.576	INTRON CG42324
3L	4659206	3L_4659206_SNP [dm3] 3L_4659206_SNP [dm6]	G	T	2.752e^-6	0.576	INTRON axo
3L	4659205	3L_4659205_SNP [dm3] 3L_4659205_SNP [dm6]	G	T	2.943e^-6	0.576	INTRON axo
3L	4659225	3L_4659225_SNP [dm3] 3L_4659225_SNP [dm6]	G	C	2.943e^-6	0.576	INTRON axo
3L	4659235	3L_4659235_SNP [dm3] 3L_4659235_SNP [dm6]	T	C	2.943e^-6	0.576	INTRON axo
3L	21261293	3L_21261293_SNP [dm3] 3L_21268193_SNP [dm6]	C	A	3.170e^-6	0.576	UPSTREAM CR45162 & 1 other DOWNSTREAM CG9389 INTRON CG9391
2R	16295473	2R_16295473_SNP [dm3] 2R_20407968_SNP [dm6]	C	T	5.033e^-6	0.744	INTERGENIC
3L	2353118	3L_2353118_SNP [dm3] 3L_2353118_SNP [dm6]	T	A	6.823e^-6	0.744	INTERGENIC
3L	4659296	3L_4659296_SNP [dm3] 3L_4659296_SNP [dm6]	T	C	7.058e^-6	0.744	INTRON axo
3L	4659302	3L_4659302_SNP [dm3] 3L_4659302_SNP [dm6]	A	G	7.058e^-6	0.744	INTRON axo
3L	4659304	3L_4659304_SNP [dm3] 3L_4659304_SNP [dm6]	A	T	7.058e^-6	0.744	INTRON axo
2L	2969058	2L_2969058_SNP [dm3] 2L_2969058_SNP [dm6]	G	A	7.090e^-6	0.744	SYNONYMOUS_CODING Ts DOWNSTREAM Rbp9 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	5247596	3R_5247596_SNP [dm3] 3R_9421874_SNP [dm6]	T	G	7.603e^-6	0.744	INTRON ps
3R	9761951	3R_9761951_SNP [dm3] 3R_13936229_SNP [dm6]	G	C	8.334e^-6	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13332525	3L_13332525_SNP [dm3] 3L_13339425_SNP [dm6]	C	G	8.338e^-6	0.744	INTERGENIC
3L	4659246	3L_4659246_SNP [dm3] 3L_4659246_SNP [dm6]	A	C	9.775e^-6	0.744	INTRON axo
3L	4659210	3L_4659210_SNP [dm3] 3L_4659210_SNP [dm6]	G	T	1.021e^-5	0.744	INTRON axo
3L	4659310	3L_4659310_SNP [dm3] 3L_4659310_SNP [dm6]	G	A	1.094e^-5	0.744	INTRON axo
3L	21857908	3L_21857908_SNP [dm3] 3L_21864808_SNP [dm6]	C	A	1.117e^-5	0.744	INTRON mub
2L	12448914	2L_12448914_SNP [dm3] 2L_12448914_SNP [dm6]	C	T	1.202e^-5	0.744	SYNONYMOUS_CODING Oatp33Eb UPSTREAM CG5421
3L	4659173	3L_4659173_SNP [dm3] 3L_4659173_SNP [dm6]	C	G	1.285e^-5	0.744	INTRON axo
3L	4659222	3L_4659222_SNP [dm3] 3L_4659222_SNP [dm6]	T	G	1.464e^-5	0.744	INTRON axo
3L	16962274	3L_16962274_SNP [dm3] 3L_16969174_SNP [dm6]	T	A	1.479e^-5	0.744	UPSTREAM Exn DOWNSTREAM Nc73EF INTERGENIC
3L	16962282	3L_16962282_SNP [dm3] 3L_16969182_SNP [dm6]	T	G	1.479e^-5	0.744	UPSTREAM Exn DOWNSTREAM Nc73EF INTERGENIC
2R	15443178	2R_15443178_SNP [dm3] 2R_19555673_SNP [dm6]	T	C	1.593e^-5	0.744	INTRON sm	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	4659280	3L_4659280_SNP [dm3] 3L_4659280_SNP [dm6]	A	G	1.595e^-5	0.744	INTRON axo
3L	4659283	3L_4659283_SNP [dm3] 3L_4659283_SNP [dm6]	A	C	1.595e^-5	0.744	INTRON axo
2L	12430752	2L_12430752_SNP [dm3] 2L_12430752_SNP [dm6]	T	C	1.722e^-5	0.744	SYNONYMOUS_CODING CG5435 DOWNSTREAM CG6388 & 1 other	TF binding site mE1_TFBS_cad
3R	19200966	3R_19200966_INS [dm3] 3R_23375244_INS [dm6]	T	TAAT	1.728e^-5	0.744	DOWNSTREAM CG42828 & 1 other INTERGENIC
3R	19200969	3R_19200969_SNP [dm3] 3R_23375247_SNP [dm6]	T	A	1.728e^-5	0.744	DOWNSTREAM CG4393 INTERGENIC
3L	22505990	3L_22505990_SNP [dm3] 3L_22512890_SNP [dm6]	T	C	1.809e^-5	0.744	INTERGENIC
3L	16716570	3L_16716570_SNP [dm3] 3L_16723470_SNP [dm6]	T	C	1.836e^-5	0.744	SYNONYMOUS_CODING Dab UTR_3_PRIME Dab	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3493210	3L_3493210_SNP [dm3] 3L_3493210_SNP [dm6]	A	T	1.975e^-5	0.744	INTRON CG42324	TF binding site mE1_TFBS_sbb
2R	16818328	2R_16818328_SNP [dm3] 2R_20930823_SNP [dm6]	A	G	2.012e^-5	0.744	INTRON Rx
2R	16818331	2R_16818331_DEL [dm3] 2R_20930826_DEL [dm6]	AATGG	A	2.012e^-5	0.744	INTRON Rx
3L	4659122	3L_4659122_INS [dm3] 3L_4659122_INS [dm6]	A	TTG	2.024e^-5	0.744	INTRON axo
3L	10396510	3L_10396510_SNP [dm3] 3L_10403410_SNP [dm6]	T	A	2.265e^-5	0.744	INTERGENIC
2R	16354594	2R_16354594_SNP [dm3] 2R_20467089_SNP [dm6]	G	T	2.273e^-5	0.744	INTRON CG12484
3R	26982703	3R_26982703_SNP [dm3] 3R_31156981_SNP [dm6]	G	T	2.363e^-5	0.744	INTRON Gycbeta100B
3R	6656802	3R_6656802_SNP [dm3] 3R_10831080_SNP [dm6]	A	T	2.372e^-5	0.744	INTRON Cad86C	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	3543998	2L_3543998_SNP [dm3] 2L_3543998_SNP [dm6]	G	T	2.475e^-5	0.744	INTRON drm
3L	7648057	3L_7648057_SNP [dm3] 3L_7654957_SNP [dm6]	T	A	2.532e^-5	0.744	UPSTREAM CG7492 DOWNSTREAM Ank2 INTRON CG32373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7648223	3L_7648223_SNP [dm3] 3L_7655123_SNP [dm6]	C	T	2.532e^-5	0.744	UPSTREAM CG7492 DOWNSTREAM Ank2 INTRON CG32373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13921721	2R_13921721_SNP [dm3] 2R_18034216_SNP [dm6]	A	G	2.556e^-5	0.744	INTERGENIC
3R	27355855	3R_27355855_SNP [dm3] 3R_31530133_SNP [dm6]	T	C	2.574e^-5	0.744	INTERGENIC
3L	3510268	3L_3510268_SNP [dm3] 3L_3510268_SNP [dm6]	A	C	2.581e^-5	0.744	UTR_3_PRIME CG42324 DOWNSTREAM ImpE2
2R	9662009	2R_9662009_SNP [dm3] 2R_13774504_SNP [dm6]	A	G	2.746e^-5	0.744	SYNONYMOUS_CODING Cpr50Ca	TF binding site mE1_TFBS_chinmo
3L	4895812	3L_4895812_SNP [dm3] 3L_4895812_SNP [dm6]	A	G	2.810e^-5	0.744	DOWNSTREAM CG17150 INTERGENIC
3L	22505911	3L_22505911_SNP [dm3] 3L_22512811_SNP [dm6]	G	A	2.826e^-5	0.744	INTERGENIC
3L	3003709	3L_3003709_SNP [dm3] 3L_3003709_SNP [dm6]	A	C	2.958e^-5	0.744	UTR_5_PRIME FMRFaR INTRON FMRFaR
3R	5225240	3R_5225240_SNP [dm3] 3R_9399518_SNP [dm6]	G	C	2.976e^-5	0.744	SYNONYMOUS_CODING Or85f DOWNSTREAM CG34117 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	8386441	3L_8386441_SNP [dm3] 3L_8393341_SNP [dm6]	G	A	3.020e^-5	0.744	SYNONYMOUS_CODING Jon66Cii DOWNSTREAM Jon66Ci	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	7648079	3L_7648079_SNP [dm3] 3L_7654979_SNP [dm6]	T	G	3.028e^-5	0.744	UPSTREAM CG7492 DOWNSTREAM Ank2 INTRON CG32373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11116831	3L_11116831_DEL [dm3] 3L_11123731_DEL [dm6]	TAA	T	3.034e^-5	0.744	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11116893	3L_11116893_SNP [dm3] 3L_11123793_SNP [dm6]	G	T	3.034e^-5	0.744	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11116950	3L_11116950_SNP [dm3] 3L_11123850_SNP [dm6]	G	A	3.034e^-5	0.744	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11116951	3L_11116951_SNP [dm3] 3L_11123851_SNP [dm6]	T	A	3.034e^-5	0.744	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11116987	3L_11116987_SNP [dm3] 3L_11123887_SNP [dm6]	C	T	3.034e^-5	0.744	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11117289	3L_11117289_SNP [dm3] 3L_11124189_SNP [dm6]	C	T	3.034e^-5	0.744	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11117298	3L_11117298_SNP [dm3] 3L_11124198_SNP [dm6]	C	A	3.034e^-5	0.744	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11117299	3L_11117299_SNP [dm3] 3L_11124199_SNP [dm6]	C	A	3.034e^-5	0.744	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11117304	3L_11117304_SNP [dm3] 3L_11124204_SNP [dm6]	C	T	3.034e^-5	0.744	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11117308	3L_11117308_SNP [dm3] 3L_11124208_SNP [dm6]	G	A	3.034e^-5	0.744	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11117314	3L_11117314_DEL [dm3] 3L_11124214_DEL [dm6]	CACCC	C	3.034e^-5	0.744	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11117336	3L_11117336_SNP [dm3] 3L_11124236_SNP [dm6]	T	C	3.034e^-5	0.744	INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	11117358	3L_11117358_INS [dm3] 3L_11124258_INS [dm6]	T	TACCAT	3.034e^-5	0.744	INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	11117417	3L_11117417_SNP [dm3] 3L_11124317_SNP [dm6]	A	T	3.034e^-5	0.744	INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	11117580	3L_11117580_SNP [dm3] 3L_11124480_SNP [dm6]	G	A	3.034e^-5	0.744	INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	11117599	3L_11117599_DEL [dm3] 3L_11124499_DEL [dm6]	ATA	A	3.034e^-5	0.744	INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	11117606	3L_11117606_DEL [dm3] 3L_11124506_DEL [dm6]	ACTTCCGCT	TA	3.034e^-5	0.744	INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	2669685	3L_2669685_SNP [dm3] 3L_2669685_SNP [dm6]	C	T	3.098e^-5	0.744	DOWNSTREAM Fife INTRON Fife
3L	18838906	3L_18838906_SNP [dm3] 3L_18845806_SNP [dm6]	C	A	3.113e^-5	0.744	INTRON Indy	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	1073192	3L_1073192_SNP [dm3] 3L_1073192_SNP [dm6]	G	A	3.158e^-5	0.745	INTRON bab1
3R	13895203	3R_13895203_SNP [dm3] 3R_18069481_SNP [dm6]	A	G	3.201e^-5	0.746	INTERGENIC
3L	3510950	3L_3510950_SNP [dm3] 3L_3510950_SNP [dm6]	A	T	3.244e^-5	0.746	DOWNSTREAM ImpE2 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	5225193	3R_5225193_SNP [dm3] 3R_9399471_SNP [dm6]	T	C	3.345e^-5	0.76	DOWNSTREAM CG34117 & 1 other INTRON Or85f	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	1447144	3L_1447144_SNP [dm3] 3L_1447144_SNP [dm6]	C	T	3.593e^-5	0.784	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22562891	3R_22562891_SNP [dm3] 3R_26737169_SNP [dm6]	A	G	3.602e^-5	0.784	UPSTREAM CG6403 & 1 other INTERGENIC
3R	6590888	3R_6590888_SNP [dm3] 3R_10765166_SNP [dm6]	A	G	3.655e^-5	0.784	NON_SYNONYMOUS_CODING Cap-H2
3R	964868	3R_964868_SNP [dm3] 3R_5139146_SNP [dm6]	A	G	3.693e^-5	0.784	UPSTREAM CG12589 INTERGENIC
3L	11116792	3L_11116792_SNP [dm3] 3L_11123692_SNP [dm6]	C	A	3.710e^-5	0.784	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11116873	3L_11116873_SNP [dm3] 3L_11123773_SNP [dm6]	A	G	3.710e^-5	0.784	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12437785	2L_12437785_SNP [dm3] 2L_12437785_SNP [dm6]	T	C	3.761e^-5	0.785	INTRON Elf	TF binding site mE1_TFBS_cad
2L	2964349	2L_2964349_SNP [dm3] 2L_2964349_SNP [dm6]	C	T	3.858e^-5	0.788	UTR_3_PRIME Rbp9	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	18807948	3L_18807948_SNP [dm3] 3L_18814848_SNP [dm6]	A	T	3.861e^-5	0.788	INTRON CG14073	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
3L	9525641	3L_9525641_SNP [dm3] 3L_9532541_SNP [dm6]	C	T	3.971e^-5	0.793	INTERGENIC
3L	9525659	3L_9525659_SNP [dm3] 3L_9532559_SNP [dm6]	C	T	3.971e^-5	0.793	INTERGENIC
3R	22562922	3R_22562922_INS [dm3] 3R_26737200_INS [dm6]	T	TAT	4.024e^-5	0.794	UPSTREAM CG6403 & 1 other INTERGENIC
3R	4331250	3R_4331250_SNP [dm3] 3R_8505528_SNP [dm6]	T	G	4.125e^-5	0.795	INTERGENIC	TF binding site mE1_TFBS_cad
3R	15301280	3R_15301280_SNP [dm3] 3R_19475558_SNP [dm6]	G	C	4.129e^-5	0.795	INTRON Dys	TF binding site mE1_TFBS_inv
2R	20238838	2R_20238838_SNP [dm3] 2R_24351315_SNP [dm6]	C	T	4.199e^-5	0.795	DOWNSTREAM CR44811 INTRON bs & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27355717	3R_27355717_SNP [dm3] 3R_31529995_SNP [dm6]	T	A	4.250e^-5	0.795	INTERGENIC
3L	4695266	3L_4695266_SNP [dm3] 3L_4695266_SNP [dm6]	A	G	4.284e^-5	0.795	UPSTREAM CG15876 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13357309	2R_13357309_SNP [dm3] 2R_17469804_SNP [dm6]	A	G	4.333e^-5	0.795	UTR_5_PRIME qkr54B UPSTREAM Tes INTRON qkr54B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	17938749	3L_17938749_SNP [dm3] 3L_17945649_SNP [dm6]	G	A	4.358e^-5	0.795	UTR_5_PRIME CG43174
3L	6565578	3L_6565578_SNP [dm3] 3L_6572478_SNP [dm6]	A	G	4.379e^-5	0.795	INTRON CG18769 & 1 other

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Missing results

By genomic position
Variant impact
Gene name

pc_FPKP_PElem_HC phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results