DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.770e^-6)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.004496
In_3R_K	0.058133

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1831 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	10396532	3L_10396532_SNP [dm3] 3L_10403432_SNP [dm6]	C	A	2.798e^-7	0.27	INTERGENIC
2L	3985015	2L_3985015_SNP [dm3] 2L_3985015_SNP [dm6]	C	A	2.974e^-7	0.27	INTRON fred
3L	7628925	3L_7628925_SNP [dm3] 3L_7635825_SNP [dm6]	G	A	4.590e^-7	0.278	INTRON CG33275	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4659254	3L_4659254_SNP [dm3] 3L_4659254_SNP [dm6]	A	T	1.323e^-6	0.576	INTRON axo
3L	3493158	3L_3493158_SNP [dm3] 3L_3493158_SNP [dm6]	T	C	2.309e^-6	0.576	INTRON CG42324
3L	4659206	3L_4659206_SNP [dm3] 3L_4659206_SNP [dm6]	G	T	2.752e^-6	0.576	INTRON axo
3L	4659205	3L_4659205_SNP [dm3] 3L_4659205_SNP [dm6]	G	T	2.943e^-6	0.576	INTRON axo
3L	4659225	3L_4659225_SNP [dm3] 3L_4659225_SNP [dm6]	G	C	2.943e^-6	0.576	INTRON axo
3L	4659235	3L_4659235_SNP [dm3] 3L_4659235_SNP [dm6]	T	C	2.943e^-6	0.576	INTRON axo
3L	21261293	3L_21261293_SNP [dm3] 3L_21268193_SNP [dm6]	C	A	3.170e^-6	0.576	UPSTREAM CR45162 & 1 other DOWNSTREAM CG9389 INTRON CG9391
2R	16295473	2R_16295473_SNP [dm3] 2R_20407968_SNP [dm6]	C	T	5.033e^-6	0.744	INTERGENIC
3L	2353118	3L_2353118_SNP [dm3] 3L_2353118_SNP [dm6]	T	A	6.823e^-6	0.744	INTERGENIC
3L	4659296	3L_4659296_SNP [dm3] 3L_4659296_SNP [dm6]	T	C	7.058e^-6	0.744	INTRON axo
3L	4659302	3L_4659302_SNP [dm3] 3L_4659302_SNP [dm6]	A	G	7.058e^-6	0.744	INTRON axo
3L	4659304	3L_4659304_SNP [dm3] 3L_4659304_SNP [dm6]	A	T	7.058e^-6	0.744	INTRON axo
2L	2969058	2L_2969058_SNP [dm3] 2L_2969058_SNP [dm6]	G	A	7.090e^-6	0.744	SYNONYMOUS_CODING Ts DOWNSTREAM Rbp9 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	5247596	3R_5247596_SNP [dm3] 3R_9421874_SNP [dm6]	T	G	7.603e^-6	0.744	INTRON ps
3R	9761951	3R_9761951_SNP [dm3] 3R_13936229_SNP [dm6]	G	C	8.334e^-6	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13332525	3L_13332525_SNP [dm3] 3L_13339425_SNP [dm6]	C	G	8.338e^-6	0.744	INTERGENIC
3L	4659246	3L_4659246_SNP [dm3] 3L_4659246_SNP [dm6]	A	C	9.775e^-6	0.744	INTRON axo
3L	4659210	3L_4659210_SNP [dm3] 3L_4659210_SNP [dm6]	G	T	1.021e^-5	0.744	INTRON axo
3L	4659310	3L_4659310_SNP [dm3] 3L_4659310_SNP [dm6]	G	A	1.094e^-5	0.744	INTRON axo
3L	21857908	3L_21857908_SNP [dm3] 3L_21864808_SNP [dm6]	C	A	1.117e^-5	0.744	INTRON mub
2L	12448914	2L_12448914_SNP [dm3] 2L_12448914_SNP [dm6]	C	T	1.202e^-5	0.744	SYNONYMOUS_CODING Oatp33Eb UPSTREAM CG5421
3L	4659173	3L_4659173_SNP [dm3] 3L_4659173_SNP [dm6]	C	G	1.285e^-5	0.744	INTRON axo
3L	4659222	3L_4659222_SNP [dm3] 3L_4659222_SNP [dm6]	T	G	1.464e^-5	0.744	INTRON axo
3L	16962274	3L_16962274_SNP [dm3] 3L_16969174_SNP [dm6]	T	A	1.479e^-5	0.744	UPSTREAM Exn DOWNSTREAM Nc73EF INTERGENIC
3L	16962282	3L_16962282_SNP [dm3] 3L_16969182_SNP [dm6]	T	G	1.479e^-5	0.744	UPSTREAM Exn DOWNSTREAM Nc73EF INTERGENIC
2R	15443178	2R_15443178_SNP [dm3] 2R_19555673_SNP [dm6]	T	C	1.593e^-5	0.744	INTRON sm	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	4659280	3L_4659280_SNP [dm3] 3L_4659280_SNP [dm6]	A	G	1.595e^-5	0.744	INTRON axo
3L	4659283	3L_4659283_SNP [dm3] 3L_4659283_SNP [dm6]	A	C	1.595e^-5	0.744	INTRON axo
2L	12430752	2L_12430752_SNP [dm3] 2L_12430752_SNP [dm6]	T	C	1.722e^-5	0.744	SYNONYMOUS_CODING CG5435 DOWNSTREAM CG6388 & 1 other	TF binding site mE1_TFBS_cad
3R	19200966	3R_19200966_INS [dm3] 3R_23375244_INS [dm6]	T	TAAT	1.728e^-5	0.744	DOWNSTREAM CG42828 & 1 other INTERGENIC
3R	19200969	3R_19200969_SNP [dm3] 3R_23375247_SNP [dm6]	T	A	1.728e^-5	0.744	DOWNSTREAM CG4393 INTERGENIC
3L	22505990	3L_22505990_SNP [dm3] 3L_22512890_SNP [dm6]	T	C	1.809e^-5	0.744	INTERGENIC
3L	16716570	3L_16716570_SNP [dm3] 3L_16723470_SNP [dm6]	T	C	1.836e^-5	0.744	SYNONYMOUS_CODING Dab UTR_3_PRIME Dab	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3493210	3L_3493210_SNP [dm3] 3L_3493210_SNP [dm6]	A	T	1.975e^-5	0.744	INTRON CG42324	TF binding site mE1_TFBS_sbb
2R	16818328	2R_16818328_SNP [dm3] 2R_20930823_SNP [dm6]	A	G	2.012e^-5	0.744	INTRON Rx
2R	16818331	2R_16818331_DEL [dm3] 2R_20930826_DEL [dm6]	AATGG	A	2.012e^-5	0.744	INTRON Rx
3L	4659122	3L_4659122_INS [dm3] 3L_4659122_INS [dm6]	A	TTG	2.024e^-5	0.744	INTRON axo
3L	10396510	3L_10396510_SNP [dm3] 3L_10403410_SNP [dm6]	T	A	2.265e^-5	0.744	INTERGENIC
2R	16354594	2R_16354594_SNP [dm3] 2R_20467089_SNP [dm6]	G	T	2.273e^-5	0.744	INTRON CG12484
3R	26982703	3R_26982703_SNP [dm3] 3R_31156981_SNP [dm6]	G	T	2.363e^-5	0.744	INTRON Gycbeta100B
3R	6656802	3R_6656802_SNP [dm3] 3R_10831080_SNP [dm6]	A	T	2.372e^-5	0.744	INTRON Cad86C	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	3543998	2L_3543998_SNP [dm3] 2L_3543998_SNP [dm6]	G	T	2.475e^-5	0.744	INTRON drm
3L	7648057	3L_7648057_SNP [dm3] 3L_7654957_SNP [dm6]	T	A	2.532e^-5	0.744	UPSTREAM CG7492 DOWNSTREAM Ank2 INTRON CG32373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7648223	3L_7648223_SNP [dm3] 3L_7655123_SNP [dm6]	C	T	2.532e^-5	0.744	UPSTREAM CG7492 DOWNSTREAM Ank2 INTRON CG32373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13921721	2R_13921721_SNP [dm3] 2R_18034216_SNP [dm6]	A	G	2.556e^-5	0.744	INTERGENIC
3R	27355855	3R_27355855_SNP [dm3] 3R_31530133_SNP [dm6]	T	C	2.574e^-5	0.744	INTERGENIC
3L	3510268	3L_3510268_SNP [dm3] 3L_3510268_SNP [dm6]	A	C	2.581e^-5	0.744	UTR_3_PRIME CG42324 DOWNSTREAM ImpE2
2R	9662009	2R_9662009_SNP [dm3] 2R_13774504_SNP [dm6]	A	G	2.746e^-5	0.744	SYNONYMOUS_CODING Cpr50Ca	TF binding site mE1_TFBS_chinmo
3L	4895812	3L_4895812_SNP [dm3] 3L_4895812_SNP [dm6]	A	G	2.810e^-5	0.744	DOWNSTREAM CG17150 INTERGENIC
3L	22505911	3L_22505911_SNP [dm3] 3L_22512811_SNP [dm6]	G	A	2.826e^-5	0.744	INTERGENIC
3L	3003709	3L_3003709_SNP [dm3] 3L_3003709_SNP [dm6]	A	C	2.958e^-5	0.744	UTR_5_PRIME FMRFaR INTRON FMRFaR
3R	5225240	3R_5225240_SNP [dm3] 3R_9399518_SNP [dm6]	G	C	2.976e^-5	0.744	SYNONYMOUS_CODING Or85f DOWNSTREAM CG34117 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	8386441	3L_8386441_SNP [dm3] 3L_8393341_SNP [dm6]	G	A	3.020e^-5	0.744	SYNONYMOUS_CODING Jon66Cii DOWNSTREAM Jon66Ci	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	7648079	3L_7648079_SNP [dm3] 3L_7654979_SNP [dm6]	T	G	3.028e^-5	0.744	UPSTREAM CG7492 DOWNSTREAM Ank2 INTRON CG32373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11116831	3L_11116831_DEL [dm3] 3L_11123731_DEL [dm6]	TAA	T	3.034e^-5	0.744	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11116893	3L_11116893_SNP [dm3] 3L_11123793_SNP [dm6]	G	T	3.034e^-5	0.744	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11116950	3L_11116950_SNP [dm3] 3L_11123850_SNP [dm6]	G	A	3.034e^-5	0.744	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11116951	3L_11116951_SNP [dm3] 3L_11123851_SNP [dm6]	T	A	3.034e^-5	0.744	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11116987	3L_11116987_SNP [dm3] 3L_11123887_SNP [dm6]	C	T	3.034e^-5	0.744	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11117289	3L_11117289_SNP [dm3] 3L_11124189_SNP [dm6]	C	T	3.034e^-5	0.744	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11117298	3L_11117298_SNP [dm3] 3L_11124198_SNP [dm6]	C	A	3.034e^-5	0.744	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11117299	3L_11117299_SNP [dm3] 3L_11124199_SNP [dm6]	C	A	3.034e^-5	0.744	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11117304	3L_11117304_SNP [dm3] 3L_11124204_SNP [dm6]	C	T	3.034e^-5	0.744	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11117308	3L_11117308_SNP [dm3] 3L_11124208_SNP [dm6]	G	A	3.034e^-5	0.744	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11117314	3L_11117314_DEL [dm3] 3L_11124214_DEL [dm6]	CACCC	C	3.034e^-5	0.744	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11117336	3L_11117336_SNP [dm3] 3L_11124236_SNP [dm6]	T	C	3.034e^-5	0.744	INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	11117358	3L_11117358_INS [dm3] 3L_11124258_INS [dm6]	T	TACCAT	3.034e^-5	0.744	INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	11117417	3L_11117417_SNP [dm3] 3L_11124317_SNP [dm6]	A	T	3.034e^-5	0.744	INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	11117580	3L_11117580_SNP [dm3] 3L_11124480_SNP [dm6]	G	A	3.034e^-5	0.744	INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	11117599	3L_11117599_DEL [dm3] 3L_11124499_DEL [dm6]	ATA	A	3.034e^-5	0.744	INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	11117606	3L_11117606_DEL [dm3] 3L_11124506_DEL [dm6]	ACTTCCGCT	TA	3.034e^-5	0.744	INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	2669685	3L_2669685_SNP [dm3] 3L_2669685_SNP [dm6]	C	T	3.098e^-5	0.744	DOWNSTREAM Fife INTRON Fife
3L	18838906	3L_18838906_SNP [dm3] 3L_18845806_SNP [dm6]	C	A	3.113e^-5	0.744	INTRON Indy	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	1073192	3L_1073192_SNP [dm3] 3L_1073192_SNP [dm6]	G	A	3.158e^-5	0.745	INTRON bab1
3R	13895203	3R_13895203_SNP [dm3] 3R_18069481_SNP [dm6]	A	G	3.201e^-5	0.746	INTERGENIC
3L	3510950	3L_3510950_SNP [dm3] 3L_3510950_SNP [dm6]	A	T	3.244e^-5	0.746	DOWNSTREAM ImpE2 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	5225193	3R_5225193_SNP [dm3] 3R_9399471_SNP [dm6]	T	C	3.345e^-5	0.76	DOWNSTREAM CG34117 & 1 other INTRON Or85f	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	1447144	3L_1447144_SNP [dm3] 3L_1447144_SNP [dm6]	C	T	3.593e^-5	0.784	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22562891	3R_22562891_SNP [dm3] 3R_26737169_SNP [dm6]	A	G	3.602e^-5	0.784	UPSTREAM CG6403 & 1 other INTERGENIC
3R	6590888	3R_6590888_SNP [dm3] 3R_10765166_SNP [dm6]	A	G	3.655e^-5	0.784	NON_SYNONYMOUS_CODING Cap-H2
3R	964868	3R_964868_SNP [dm3] 3R_5139146_SNP [dm6]	A	G	3.693e^-5	0.784	UPSTREAM CG12589 INTERGENIC
3L	11116792	3L_11116792_SNP [dm3] 3L_11123692_SNP [dm6]	C	A	3.710e^-5	0.784	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11116873	3L_11116873_SNP [dm3] 3L_11123773_SNP [dm6]	A	G	3.710e^-5	0.784	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12437785	2L_12437785_SNP [dm3] 2L_12437785_SNP [dm6]	T	C	3.761e^-5	0.785	INTRON Elf	TF binding site mE1_TFBS_cad
2L	2964349	2L_2964349_SNP [dm3] 2L_2964349_SNP [dm6]	C	T	3.858e^-5	0.788	UTR_3_PRIME Rbp9	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	18807948	3L_18807948_SNP [dm3] 3L_18814848_SNP [dm6]	A	T	3.861e^-5	0.788	INTRON CG14073	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
3L	9525641	3L_9525641_SNP [dm3] 3L_9532541_SNP [dm6]	C	T	3.971e^-5	0.793	INTERGENIC
3L	9525659	3L_9525659_SNP [dm3] 3L_9532559_SNP [dm6]	C	T	3.971e^-5	0.793	INTERGENIC
3R	22562922	3R_22562922_INS [dm3] 3R_26737200_INS [dm6]	T	TAT	4.024e^-5	0.794	UPSTREAM CG6403 & 1 other INTERGENIC
3R	4331250	3R_4331250_SNP [dm3] 3R_8505528_SNP [dm6]	T	G	4.125e^-5	0.795	INTERGENIC	TF binding site mE1_TFBS_cad
3R	15301280	3R_15301280_SNP [dm3] 3R_19475558_SNP [dm6]	G	C	4.129e^-5	0.795	INTRON Dys	TF binding site mE1_TFBS_inv
2R	20238838	2R_20238838_SNP [dm3] 2R_24351315_SNP [dm6]	C	T	4.199e^-5	0.795	DOWNSTREAM CR44811 INTRON bs & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27355717	3R_27355717_SNP [dm3] 3R_31529995_SNP [dm6]	T	A	4.250e^-5	0.795	INTERGENIC
3L	4695266	3L_4695266_SNP [dm3] 3L_4695266_SNP [dm6]	A	G	4.284e^-5	0.795	UPSTREAM CG15876 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13357309	2R_13357309_SNP [dm3] 2R_17469804_SNP [dm6]	A	G	4.333e^-5	0.795	UTR_5_PRIME qkr54B UPSTREAM Tes INTRON qkr54B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	17938749	3L_17938749_SNP [dm3] 3L_17945649_SNP [dm6]	G	A	4.358e^-5	0.795	UTR_5_PRIME CG43174
3L	6565578	3L_6565578_SNP [dm3] 3L_6572478_SNP [dm6]	A	G	4.379e^-5	0.795	INTRON CG18769 & 1 other
3L	17844321	3L_17844321_SNP [dm3] 3L_17851221_SNP [dm6]	A	T	4.426e^-5	0.796	SYNONYMOUS_CODING CG7441
3R	5225273	3R_5225273_SNP [dm3] 3R_9399551_SNP [dm6]	G	A	4.607e^-5	0.815	SYNONYMOUS_STOP Or85f DOWNSTREAM CG34117 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	22505969	3L_22505969_SNP [dm3] 3L_22512869_SNP [dm6]	T	C	4.744e^-5	0.815	INTERGENIC
2L	12448890	2L_12448890_SNP [dm3] 2L_12448890_SNP [dm6]	C	T	4.825e^-5	0.815	SYNONYMOUS_CODING Oatp33Eb UPSTREAM CG5421
2L	12448898	2L_12448898_SNP [dm3] 2L_12448898_SNP [dm6]	G	C	4.825e^-5	0.815	SYNONYMOUS_CODING Oatp33Eb UPSTREAM CG5421
3R	13895201	3R_13895201_SNP [dm3] 3R_18069479_SNP [dm6]	T	A	4.840e^-5	0.815	INTERGENIC
3L	11117703	3L_11117703_SNP [dm3] 3L_11124603_SNP [dm6]	C	T	4.868e^-5	0.815	INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	13895133	3R_13895133_SNP [dm3] 3R_18069411_SNP [dm6]	T	A	4.904e^-5	0.815	INTERGENIC
3L	11119051	3L_11119051_SNP [dm3] 3L_11125951_SNP [dm6]	C	T	4.918e^-5	0.815	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2R	16457507	2R_16457507_SNP [dm3] 2R_20570002_SNP [dm6]	A	T	5.013e^-5	0.815	INTRON qsm	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	11473896	3R_11473896_SNP [dm3] 3R_15648174_SNP [dm6]	C	G	5.031e^-5	0.815	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	16056420	3L_16056420_SNP [dm3] 3L_16063320_SNP [dm6]	T	C	5.071e^-5	0.815	UTR_3_PRIME Mbs INTRON Mbs
2L	22322001	2L_22322001_SNP [dm3] 2L_22322001_SNP [dm6]	C	T	5.114e^-5	0.815	INTRON CG17018	transposable element FlyBase
3L	17844213	3L_17844213_SNP [dm3] 3L_17851113_SNP [dm6]	C	A	5.116e^-5	0.815	SYNONYMOUS_CODING CG7441
2L	4204564	2L_4204564_SNP [dm3] 2L_4204564_SNP [dm6]	C	G	5.313e^-5	0.832	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_sens
3L	11120199	3L_11120199_SNP [dm3] 3L_11127099_SNP [dm6]	C	T	5.313e^-5	0.832	INTRON CG42575	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	5765760	2L_5765760_SNP [dm3] 2L_5765760_SNP [dm6]	C	A	5.358e^-5	0.832	INTRON obst-E
3R	6590867	3R_6590867_SNP [dm3] 3R_10765145_SNP [dm6]	T	C	5.448e^-5	0.836	NON_SYNONYMOUS_CODING Cap-H2
3R	19226258	3R_19226258_SNP [dm3] 3R_23400536_SNP [dm6]	G	C	5.528e^-5	0.836	UPSTREAM CR44323 INTERGENIC
3L	7648401	3L_7648401_SNP [dm3] 3L_7655301_SNP [dm6]	A	G	5.576e^-5	0.836	UPSTREAM CG7492 DOWNSTREAM Ank2 INTRON CG32373	TF binding site BDTNP1_TFBS_dl
3L	22850541	3L_22850541_SNP [dm3] 3L_22857441_SNP [dm6]	T	C	5.613e^-5	0.836	INTERGENIC
X	12408561	X_12408561_SNP [dm3] X_12514528_SNP [dm6]	A	G	5.750e^-5	0.836	SYNONYMOUS_CODING CG2556	TF binding site mE1_TFBS_chinmo
3L	1447133	3L_1447133_INS [dm3] 3L_1447133_INS [dm6]	G	GTCGG	5.751e^-5	0.836	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9768036	3R_9768036_SNP [dm3] 3R_13942314_SNP [dm6]	A	G	5.793e^-5	0.836	UTR_3_PRIME Art9	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	21968433	3L_21968433_SNP [dm3] 3L_21975333_SNP [dm6]	A	G	5.865e^-5	0.836	INTRON CG7470
3R	16067185	3R_16067185_SNP [dm3] 3R_20241463_SNP [dm6]	G	A	5.885e^-5	0.836	INTRON Nlg4
2L	4148869	2L_4148869_SNP [dm3] 2L_4148869_SNP [dm6]	C	T	5.938e^-5	0.836	UPSTREAM CG2955 INTERGENIC
2L	9142756	2L_9142756_SNP [dm3] 2L_9142756_SNP [dm6]	T	C	5.968e^-5	0.836	INTRON CG32982
3R	26086990	3R_26086990_SNP [dm3] 3R_30261268_SNP [dm6]	G	T	5.994e^-5	0.836	INTERGENIC
2R	6000532	2R_6000532_SNP [dm3] 2R_10113027_SNP [dm6]	C	A	6.024e^-5	0.836	SYNONYMOUS_CODING Pfk
3L	22505872	3L_22505872_SNP [dm3] 3L_22512772_SNP [dm6]	G	T	6.028e^-5	0.836	INTERGENIC
3L	17844702	3L_17844702_SNP [dm3] 3L_17851602_SNP [dm6]	T	C	6.160e^-5	0.84	SYNONYMOUS_CODING CG7441
2R	16818320	2R_16818320_SNP [dm3] 2R_20930815_SNP [dm6]	A	T	6.212e^-5	0.84	INTRON Rx
3L	22831478	3L_22831478_SNP [dm3] 3L_22838378_SNP [dm6]	T	C	6.244e^-5	0.84	DOWNSTREAM CG11226 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22831739	3L_22831739_DEL [dm3] 3L_22838639_DEL [dm6]	TTTGTGCCGGCCCGCTCCCT...	T	6.244e^-5	0.84	DOWNSTREAM CG11226 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11688234	2R_11688234_SNP [dm3] 2R_15800729_SNP [dm6]	C	A	6.397e^-5	0.852	INTRON Zasp52 & 1 other
3L	11112660	3L_11112660_DEL [dm3] 3L_11119560_DEL [dm6]	GA	G	6.425e^-5	0.852	UPSTREAM fd68A INTRON fd68A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	22505885	3L_22505885_SNP [dm3] 3L_22512785_SNP [dm6]	A	T	6.499e^-5	0.854	INTERGENIC
3L	8386486	3L_8386486_SNP [dm3] 3L_8393386_SNP [dm6]	G	C	6.577e^-5	0.854	SYNONYMOUS_CODING Jon66Cii	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	17222739	X_17222739_SNP [dm3] X_17328706_SNP [dm6]	T	A	6.685e^-5	0.854	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	16960128	2R_16960128_SNP [dm3] 2R_21072623_SNP [dm6]	A	G	6.701e^-5	0.854	DOWNSTREAM CR44704 INTRON CG10527	TF binding site mE1_TFBS_Trl
3R	26468217	3R_26468217_SNP [dm3] 3R_30642495_SNP [dm6]	T	C	6.720e^-5	0.854	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11116788	3L_11116788_SNP [dm3] 3L_11123688_SNP [dm6]	G	C	6.723e^-5	0.854	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	16716558	3L_16716558_SNP [dm3] 3L_16723458_SNP [dm6]	C	T	6.829e^-5	0.857	SYNONYMOUS_CODING Dab UTR_3_PRIME Dab	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	18789180	3L_18789180_SNP [dm3] 3L_18796080_SNP [dm6]	G	C	6.864e^-5	0.857	INTRON ftz-f1
3L	17937594	3L_17937594_SNP [dm3] 3L_17944494_SNP [dm6]	T	C	6.900e^-5	0.857	INTRON CG43174
3L	1446930	3L_1446930_SNP [dm3] 3L_1446930_SNP [dm6]	C	A	6.939e^-5	0.857	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17882734	3L_17882734_SNP [dm3] 3L_17889634_SNP [dm6]	A	G	6.979e^-5	0.857	SYNONYMOUS_CODING CG7402
3L	21857864	3L_21857864_SNP [dm3] 3L_21864764_SNP [dm6]	G	C	7.226e^-5	0.864	INTRON mub
X	1354610	X_1354610_INS [dm3] X_1460577_INS [dm6]	T	TA	7.277e^-5	0.864	UTR_5_PRIME CG14786 DOWNSTREAM CG14787	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
3L	11414867	3L_11414867_SNP [dm3] 3L_11421767_SNP [dm6]	A	C	7.285e^-5	0.864	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7647977	3L_7647977_SNP [dm3] 3L_7654877_SNP [dm6]	A	T	7.437e^-5	0.864	UPSTREAM CG7492 DOWNSTREAM Ank2 INTRON CG32373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7648017	3L_7648017_SNP [dm3] 3L_7654917_SNP [dm6]	A	G	7.437e^-5	0.864	UPSTREAM CG7492 DOWNSTREAM Ank2 INTRON CG32373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7648054	3L_7648054_SNP [dm3] 3L_7654954_SNP [dm6]	T	A	7.437e^-5	0.864	UPSTREAM CG7492 DOWNSTREAM Ank2 INTRON CG32373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	21222505	3L_21222505_SNP [dm3] 3L_21229405_SNP [dm6]	T	C	7.483e^-5	0.864	INTRON Eip78C
3L	19386664	3L_19386664_SNP [dm3] 3L_19393564_SNP [dm6]	T	A	7.702e^-5	0.864	INTRON CG32206
3R	5487637	3R_5487637_SNP [dm3] 3R_9661915_SNP [dm6]	C	T	7.914e^-5	0.864	SYNONYMOUS_CODING CG9492	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	21968126	3L_21968126_SNP [dm3] 3L_21975026_SNP [dm6]	T	A	7.921e^-5	0.864	INTRON CG7470
3L	21968129	3L_21968129_SNP [dm3] 3L_21975029_SNP [dm6]	T	C	7.921e^-5	0.864	INTRON CG7470
3L	21968130	3L_21968130_SNP [dm3] 3L_21975030_SNP [dm6]	G	A	7.921e^-5	0.864	INTRON CG7470
2R	11900136	2R_11900136_SNP [dm3] 2R_16012631_SNP [dm6]	A	C	7.963e^-5	0.864	INTRON CG8389	TF binding site BDTNP1_TFBS_sna
2L	13552179	2L_13552179_SNP [dm3] 2L_13552179_SNP [dm6]	G	T	7.986e^-5	0.864	INTRON kuz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	21261080	3L_21261080_SNP [dm3] 3L_21267980_SNP [dm6]	A	T	8.041e^-5	0.864	UPSTREAM CR45162 & 1 other DOWNSTREAM CG9389 INTRON CG9391	TF binding site mE1_TFBS_cad
3L	13558866	3L_13558866_SNP [dm3] 3L_13565766_SNP [dm6]	G	C	8.065e^-5	0.864	INTRON bru-3
3R	21650153	3R_21650153_SNP [dm3] 3R_25824431_SNP [dm6]	C	T	8.068e^-5	0.864	EXON CR44949
3R	21650184	3R_21650184_SNP [dm3] 3R_25824462_SNP [dm6]	G	A	8.068e^-5	0.864	EXON CR44949
3R	21650264	3R_21650264_SNP [dm3] 3R_25824542_SNP [dm6]	G	A	8.068e^-5	0.864	EXON CR44949
3L	2875138	3L_2875138_SNP [dm3] 3L_2875138_SNP [dm6]	G	A	8.132e^-5	0.864	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6724168	3L_6724168_SNP [dm3] 3L_6731068_SNP [dm6]	G	A	8.189e^-5	0.864	SYNONYMOUS_CODING dikar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17975464	3L_17975464_SNP [dm3] 3L_17982364_SNP [dm6]	G	A	8.266e^-5	0.864	INTRON Eip75B
2L	13552188	2L_13552188_SNP [dm3] 2L_13552188_SNP [dm6]	C	T	8.320e^-5	0.864	INTRON kuz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	11118089	3L_11118089_SNP [dm3] 3L_11124989_SNP [dm6]	T	C	8.383e^-5	0.864	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	10749270	3L_10749270_SNP [dm3] 3L_10756170_SNP [dm6]	T	C	8.436e^-5	0.864	INTERGENIC
X	19004501	X_19004501_SNP [dm3] X_19110468_SNP [dm6]	G	C	8.589e^-5	0.864	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	27461422	3R_27461422_SNP [dm3] 3R_31635700_SNP [dm6]	T	C	8.698e^-5	0.864	INTRON kek6	TF binding site mE1_TFBS_chinmo
3R	22562985	3R_22562985_SNP [dm3] 3R_26737263_SNP [dm6]	C	A	8.727e^-5	0.864	UPSTREAM CG6403 & 1 other INTERGENIC
2R	9660003	2R_9660003_DEL [dm3] 2R_13772498_DEL [dm6]	AA	A	8.800e^-5	0.864	INTRON Cpr50Ca
2L	6716094	2L_6716094_SNP [dm3] 2L_6716094_SNP [dm6]	C	T	8.836e^-5	0.864	UTR_5_PRIME AkhR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb
3R	20309996	3R_20309996_SNP [dm3] 3R_24484274_SNP [dm6]	T	A	8.839e^-5	0.864	INTERGENIC
3L	11125617	3L_11125617_SNP [dm3] 3L_11132517_SNP [dm6]	A	G	8.862e^-5	0.864	UPSTREAM CG32074 INTRON CG42575
2L	7392737	2L_7392737_SNP [dm3] 2L_7392737_SNP [dm6]	T	G	8.958e^-5	0.864	INTRON CG5160
3L	11118677	3L_11118677_SNP [dm3] 3L_11125577_SNP [dm6]	G	A	9.073e^-5	0.864	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
3R	17199067	3R_17199067_SNP [dm3] 3R_21373345_SNP [dm6]	C	T	9.093e^-5	0.864	INTRON mod_mdg4_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	7648038	3L_7648038_SNP [dm3] 3L_7654938_SNP [dm6]	A	G	9.157e^-5	0.864	UPSTREAM CG7492 DOWNSTREAM Ank2 INTRON CG32373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12978525	3L_12978525_SNP [dm3] 3L_12985425_SNP [dm6]	C	T	9.219e^-5	0.864	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3L	4884407	3L_4884407_SNP [dm3] 3L_4884407_SNP [dm6]	C	T	9.253e^-5	0.864	INTRON CG17150
2L	7707719	2L_7707719_SNP [dm3] 2L_7707719_SNP [dm6]	T	C	9.277e^-5	0.864	SYNONYMOUS_CODING Tep3 DOWNSTREAM CR44990
3L	11675024	3L_11675024_SNP [dm3] 3L_11681924_SNP [dm6]	G	C	9.282e^-5	0.864	UPSTREAM TfIIEalpha INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	17941245	3L_17941245_SNP [dm3] 3L_17948145_SNP [dm6]	T	A	9.285e^-5	0.864	UPSTREAM CR45393 INTERGENIC
2L	16394582	2L_16394582_SNP [dm3] 2L_16394582_SNP [dm6]	C	T	9.297e^-5	0.864	INTERGENIC
3R	26403559	3R_26403559_SNP [dm3] 3R_30577837_SNP [dm6]	A	G	9.321e^-5	0.864	INTRON tmod
3L	17951754	3L_17951754_SNP [dm3] 3L_17958654_SNP [dm6]	A	G	9.438e^-5	0.864	INTRON Eip75B
2L	2723945	2L_2723945_SNP [dm3] 2L_2723945_SNP [dm6]	C	T	9.442e^-5	0.864	INTERGENIC
3L	4025537	3L_4025537_SNP [dm3] 3L_4025537_SNP [dm6]	C	A	9.487e^-5	0.864	UTR_5_PRIME CG11594 UPSTREAM CG11594 INTRON CG11594
2R	20042996	2R_20042996_SNP [dm3] 2R_24155473_SNP [dm6]	A	G	9.526e^-5	0.864	INTRON Dat
3L	4659308	3L_4659308_SNP [dm3] 3L_4659308_SNP [dm6]	T	A	9.553e^-5	0.864	INTRON axo
3L	7649787	3L_7649787_SNP [dm3] 3L_7656687_SNP [dm6]	G	A	9.571e^-5	0.864	SYNONYMOUS_CODING Ank2 INTRON CG32373 & 1 other	TF binding site mE1_TFBS_cad
3L	18805711	3L_18805711_SNP [dm3] 3L_18812611_SNP [dm6]	G	A	9.620e^-5	0.864	INTRON CG14073
3L	11116816	3L_11116816_INS [dm3] 3L_11123716_INS [dm6]	T	TT	9.734e^-5	0.864	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11116847	3L_11116847_SNP [dm3] 3L_11123747_SNP [dm6]	A	G	9.734e^-5	0.864	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11116849	3L_11116849_SNP [dm3] 3L_11123749_SNP [dm6]	G	A	9.734e^-5	0.864	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3003716	3L_3003716_INS [dm3] 3L_3003716_INS [dm6]	A	ATATTCACAT	9.744e^-5	0.864	UTR_5_PRIME FMRFaR INTRON FMRFaR
3R	20949007	3R_20949007_SNP [dm3] 3R_25123285_SNP [dm6]	G	T	9.766e^-5	0.864	UPSTREAM vig2 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	11391416	3L_11391416_SNP [dm3] 3L_11398316_SNP [dm6]	A	C	9.809e^-5	0.864	DOWNSTREAM CG44362 INTERGENIC
3L	4659154	3L_4659154_SNP [dm3] 3L_4659154_SNP [dm6]	T	G	9.846e^-5	0.864	INTRON axo
3L	4659156	3L_4659156_SNP [dm3] 3L_4659156_SNP [dm6]	C	A	9.846e^-5	0.864	INTRON axo
3R	6590256	3R_6590256_SNP [dm3] 3R_10764534_SNP [dm6]	G	A	9.860e^-5	0.864	NON_SYNONYMOUS_CODING Cap-H2
2L	10464819	2L_10464819_DEL [dm3] 2L_10464819_DEL [dm6]	AA	A	9.889e^-5	0.864	SPLICE_SITE_REGION RluA-1 INTRON RluA-1
3L	19019030	3L_19019030_SNP [dm3] 3L_19025930_SNP [dm6]	C	T	1.018e^-4	0.873	INTRON nkd
3L	21353430	3L_21353430_SNP [dm3] 3L_21360330_SNP [dm6]	T	C	1.026e^-4	0.873	UTR_5_PRIME CG32440 DOWNSTREAM CG32437
2R	6003323	2R_6003323_SNP [dm3] 2R_10115818_SNP [dm6]	G	C	1.028e^-4	0.873	SYNONYMOUS_CODING Pfk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2052426	3L_2052426_SNP [dm3] 3L_2052426_SNP [dm6]	A	G	1.029e^-4	0.873	INTRON sls
3L	7647999	3L_7647999_SNP [dm3] 3L_7654899_SNP [dm6]	A	G	1.031e^-4	0.873	UPSTREAM CG7492 DOWNSTREAM Ank2 INTRON CG32373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11116796	3L_11116796_SNP [dm3] 3L_11123696_SNP [dm6]	C	A	1.031e^-4	0.873	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	17842126	3L_17842126_SNP [dm3] 3L_17849026_SNP [dm6]	T	C	1.038e^-4	0.873	UPSTREAM CG7441 INTRON CG7430	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9148671	2L_9148671_SNP [dm3] 2L_9148671_SNP [dm6]	A	T	1.040e^-4	0.873	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25798821	3R_25798821_SNP [dm3] 3R_29973099_SNP [dm6]	T	C	1.043e^-4	0.873	INTERGENIC
X	2713498	X_2713498_SNP [dm3] X_2819465_SNP [dm6]	T	C	1.059e^-4	0.873	INTRON kirre
3R	26982735	3R_26982735_SNP [dm3] 3R_31157013_SNP [dm6]	C	A	1.062e^-4	0.873	INTRON Gycbeta100B
3R	19310757	3R_19310757_SNP [dm3] 3R_23485035_SNP [dm6]	C	T	1.067e^-4	0.873	SYNONYMOUS_CODING Ir94g UPSTREAM CR44324	TF binding site mE1_TFBS_HSA
3R	16570205	3R_16570205_SNP [dm3] 3R_20744483_SNP [dm6]	C	G	1.085e^-4	0.873	SYNONYMOUS_CODING CG31200 UPSTREAM CG31199 INTRON CG42322	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	16570211	3R_16570211_SNP [dm3] 3R_20744489_SNP [dm6]	T	G	1.085e^-4	0.873	SYNONYMOUS_CODING CG31200 UPSTREAM CG31199 INTRON CG42322	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	3658906	X_3658906_DEL [dm3] X_3764873_DEL [dm6]	AAATTT	A	1.107e^-4	0.873	INTRON tlk
3L	3511528	3L_3511528_SNP [dm3] 3L_3511528_SNP [dm6]	G	C	1.121e^-4	0.873	NON_SYNONYMOUS_CODING ImpE2 DOWNSTREAM CG42324	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6724144	3L_6724144_SNP [dm3] 3L_6731044_SNP [dm6]	C	T	1.123e^-4	0.873	SYNONYMOUS_CODING dikar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22750380	3R_22750380_SNP [dm3] 3R_26924658_SNP [dm6]	A	T	1.124e^-4	0.873	START_GAINED sda UTR_5_PRIME sda
3L	21142944	3L_21142944_SNP [dm3] 3L_21149844_SNP [dm6]	G	A	1.135e^-4	0.873	INTRON Ac78C
2L	899810	2L_899810_SNP [dm3] 2L_899810_SNP [dm6]	A	G	1.140e^-4	0.873	SYNONYMOUS_CODING Lsp1beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	16745498	3L_16745498_SNP [dm3] 3L_16752398_SNP [dm6]	T	A	1.142e^-4	0.873	INTERGENIC
3L	21150357	3L_21150357_SNP [dm3] 3L_21157257_SNP [dm6]	A	T	1.145e^-4	0.873	INTRON Ac78C
3R	15409543	3R_15409543_SNP [dm3] 3R_19583821_SNP [dm6]	G	A	1.145e^-4	0.873	INTRON Dys
3L	7521407	3L_7521407_SNP [dm3] 3L_7528307_SNP [dm6]	A	G	1.155e^-4	0.873	UPSTREAM lqf DOWNSTREAM ltl INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	3828678	X_3828678_SNP [dm3] X_3934645_SNP [dm6]	T	A	1.161e^-4	0.873	SYNONYMOUS_CODING CG2938	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	3662954	X_3662954_SNP [dm3] X_3768921_SNP [dm6]	C	T	1.164e^-4	0.873	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21597099	3R_21597099_SNP [dm3] 3R_25771377_SNP [dm6]	T	C	1.165e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12529233	3L_12529233_SNP [dm3] 3L_12536133_SNP [dm6]	C	T	1.165e^-4	0.873	SYNONYMOUS_CODING CG4069 DOWNSTREAM CG10688	TF binding site mE1_TFBS_cad
3L	21255910	3L_21255910_SNP [dm3] 3L_21262810_SNP [dm6]	T	G	1.166e^-4	0.873	INTRON Eip78C
3L	21343273	3L_21343273_SNP [dm3] 3L_21350173_SNP [dm6]	A	G	1.168e^-4	0.873	SYNONYMOUS_CODING CG32436 UPSTREAM ebd2
3L	1887676	3L_1887676_SNP [dm3] 3L_1887676_SNP [dm6]	T	C	1.183e^-4	0.873	INTRON Tmhs	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3R	20310015	3R_20310015_SNP [dm3] 3R_24484293_SNP [dm6]	T	G	1.187e^-4	0.873	INTERGENIC
2R	17882109	2R_17882109_SNP [dm3] 2R_21994604_SNP [dm6]	C	A	1.189e^-4	0.873	INTRON CG34370
3L	19387125	3L_19387125_SNP [dm3] 3L_19394025_SNP [dm6]	A	C	1.189e^-4	0.873	INTRON CG32206
2R	10020304	2R_10020304_SNP [dm3] 2R_14132799_SNP [dm6]	A	C	1.204e^-4	0.873	INTRON Prosap	TF binding site mE1_TFBS_inv
X	22182202	X_22182202_SNP [dm3] X_22780366_SNP [dm6]	A	G	1.204e^-4	0.873	INTRON CR44997	transposable element FlyBase
3L	22493021	3L_22493021_SNP [dm3] 3L_22499921_SNP [dm6]	A	T	1.205e^-4	0.873	INTERGENIC
2R	17674838	2R_17674838_SNP [dm3] 2R_21787333_SNP [dm6]	T	G	1.207e^-4	0.873	INTERGENIC
2R	17674839	2R_17674839_SNP [dm3] 2R_21787334_SNP [dm6]	G	A	1.207e^-4	0.873	INTERGENIC
3L	7648112	3L_7648112_DEL [dm3] 3L_7655012_DEL [dm6]	ATGTGCCCATA...	A	1.213e^-4	0.873	UPSTREAM CG7492 DOWNSTREAM Ank2 INTRON CG32373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17730876	2R_17730876_SNP [dm3] 2R_21843371_SNP [dm6]	C	G	1.224e^-4	0.873	UPSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17730893	2R_17730893_SNP [dm3] 2R_21843388_SNP [dm6]	T	A	1.224e^-4	0.873	UPSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	5236746	3R_5236746_SNP [dm3] 3R_9411024_SNP [dm6]	T	C	1.226e^-4	0.873	SYNONYMOUS_CODING Task7 UPSTREAM betaTub85D
2R	16818156	2R_16818156_SNP [dm3] 2R_20930651_SNP [dm6]	C	G	1.230e^-4	0.873	INTRON Rx
2L	6717991	2L_6717991_INS [dm3] 2L_6717991_INS [dm6]	A	ATGA	1.235e^-4	0.873		TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11117249	3L_11117249_SNP [dm3] 3L_11124149_SNP [dm6]	T	C	1.237e^-4	0.873	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	16254185	3L_16254185_SNP [dm3] 3L_16261085_SNP [dm6]	G	T	1.239e^-4	0.873	DOWNSTREAM CG34247 INTERGENIC
3L	17882066	3L_17882066_SNP [dm3] 3L_17888966_SNP [dm6]	C	T	1.241e^-4	0.873	INTRON CG7402
2L	14434437	2L_14434437_SNP [dm3] 2L_14434437_SNP [dm6]	G	C	1.243e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	14889390	2R_14889390_SNP [dm3] 2R_19001885_SNP [dm6]	A	G	1.243e^-4	0.873	INTRON tn	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	13575591	3L_13575591_SNP [dm3] 3L_13582491_SNP [dm6]	G	T	1.256e^-4	0.873	INTRON bru-3
3L	17941915	3L_17941915_SNP [dm3] 3L_17948815_SNP [dm6]	T	G	1.258e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	17941952	3L_17941952_SNP [dm3] 3L_17948852_SNP [dm6]	T	A	1.258e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	11154560	X_11154560_SNP [dm3] X_11260527_SNP [dm6]	A	G	1.262e^-4	0.873	INTRON CG44422
X	12035659	X_12035659_SNP [dm3] X_12141626_SNP [dm6]	A	G	1.276e^-4	0.873	INTRON Ten-a
X	12035700	X_12035700_SNP [dm3] X_12141667_SNP [dm6]	C	T	1.276e^-4	0.873	INTRON Ten-a
2L	22320751	2L_22320751_SNP [dm3] 2L_22320751_SNP [dm6]	C	T	1.280e^-4	0.873	INTRON CG17018
3L	19386731	3L_19386731_SNP [dm3] 3L_19393631_SNP [dm6]	C	T	1.281e^-4	0.873	INTRON CG32206
3L	22900151	3L_22900151_SNP [dm3] 3L_22907051_SNP [dm6]	C	G	1.287e^-4	0.873	INTERGENIC
3L	1356345	3L_1356345_SNP [dm3] 3L_1356345_SNP [dm6]	C	T	1.287e^-4	0.873	INTRON Ptp61F	TF binding site mE1_TFBS_inv
3R	17393951	3R_17393951_SNP [dm3] 3R_21568229_SNP [dm6]	A	G	1.300e^-4	0.878	SYNONYMOUS_CODING CG15498
3R	4201351	3R_4201351_SNP [dm3] 3R_8375629_SNP [dm6]	A	G	1.313e^-4	0.878	INTRON CG45263
3L	16968361	3L_16968361_SNP [dm3] 3L_16975261_SNP [dm6]	C	T	1.314e^-4	0.878	INTRON Exn	TF binding site mE1_TFBS_Kr
3L	21142895	3L_21142895_SNP [dm3] 3L_21149795_SNP [dm6]	A	G	1.315e^-4	0.878	INTRON Ac78C
2R	16984914	2R_16984914_SNP [dm3] 2R_21097409_SNP [dm6]	G	T	1.320e^-4	0.879	UPSTREAM CG34396 & 1 other INTRON CG34396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10629949	2L_10629949_SNP [dm3] 2L_10629949_SNP [dm6]	T	C	1.338e^-4	0.886	SYNONYMOUS_CODING CG7329
2L	12437483	2L_12437483_SNP [dm3] 2L_12437483_SNP [dm6]	T	C	1.349e^-4	0.886	INTRON Elf
3L	11675026	3L_11675026_SNP [dm3] 3L_11681926_SNP [dm6]	T	A	1.350e^-4	0.886	UPSTREAM TfIIEalpha INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	7630052	3L_7630052_SNP [dm3] 3L_7636952_SNP [dm6]	C	T	1.350e^-4	0.886	SYNONYMOUS_CODING CG33275
3L	7633219	3L_7633219_SNP [dm3] 3L_7640119_SNP [dm6]	A	G	1.357e^-4	0.887	SPLICE_SITE_REGION CG33276 DOWNSTREAM CG33275 & 2 others INTRON CG33276	TF binding site mE1_TFBS_Ubx
2R	16617572	2R_16617572_SNP [dm3] 2R_20730067_SNP [dm6]	C	G	1.379e^-4	0.898	NON_SYNONYMOUS_CODING CG13442 INTRON dpr
3R	25731080	3R_25731080_SNP [dm3] 3R_29905358_SNP [dm6]	C	T	1.388e^-4	0.898	UPSTREAM CG15515 INTERGENIC
2L	6770200	2L_6770200_SNP [dm3] 2L_6770200_SNP [dm6]	T	C	1.388e^-4	0.898	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_chinmo
2L	22360042	2L_22360042_SNP [dm3] 2L_22360042_SNP [dm6]	A	C	1.395e^-4	0.898	INTRON CG17018	transposable element FlyBase
3L	11453316	3L_11453316_INS [dm3] 3L_11460216_INS [dm6]	A	AA	1.419e^-4	0.903	DOWNSTREAM CG7551 INTERGENIC	TF binding site mE1_TFBS_inv
3L	7521304	3L_7521304_SNP [dm3] 3L_7528204_SNP [dm6]	G	A	1.420e^-4	0.903	UPSTREAM lqf DOWNSTREAM ltl INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	7521529	3L_7521529_SNP [dm3] 3L_7528429_SNP [dm6]	C	T	1.420e^-4	0.903	UPSTREAM lqf DOWNSTREAM ltl INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	12959894	2L_12959894_SNP [dm3] 2L_12959894_SNP [dm6]	A	G	1.424e^-4	0.903	INTERGENIC
3L	11391415	3L_11391415_SNP [dm3] 3L_11398315_SNP [dm6]	A	T	1.426e^-4	0.903	DOWNSTREAM CG44362 INTERGENIC
X	3663111	X_3663111_SNP [dm3] X_3769078_SNP [dm6]	A	C	1.434e^-4	0.905	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2210331	3L_2210331_SNP [dm3] 3L_2210331_SNP [dm6]	C	T	1.450e^-4	0.905	DOWNSTREAM CG15878 INTERGENIC
3L	7148152	3L_7148152_SNP [dm3] 3L_7155052_SNP [dm6]	C	T	1.457e^-4	0.905	INTRON corn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	22843107	3L_22843107_SNP [dm3] 3L_22850007_SNP [dm6]	A	G	1.462e^-4	0.905	UPSTREAM CR43426 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	9908241	X_9908241_SNP [dm3] X_10014208_SNP [dm6]	T	A	1.466e^-4	0.905	UTR_3_PRIME CG2990
3L	15681002	3L_15681002_SNP [dm3] 3L_15687902_SNP [dm6]	C	G	1.472e^-4	0.905	UTR_5_PRIME CG34452 UPSTREAM CG34452 DOWNSTREAM CG34451	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_twi
X	5865800	X_5865800_SNP [dm3] X_5971767_SNP [dm6]	T	A	1.479e^-4	0.905	INTRON Grip
X	5865804	X_5865804_SNP [dm3] X_5971771_SNP [dm6]	G	T	1.479e^-4	0.905	INTRON Grip
X	5865838	X_5865838_SNP [dm3] X_5971805_SNP [dm6]	T	A	1.479e^-4	0.905	INTRON Grip
3L	21328967	3L_21328967_SNP [dm3] 3L_21335867_SNP [dm6]	C	A	1.488e^-4	0.905	NON_SYNONYMOUS_CODING CG7338 DOWNSTREAM Rab26	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	21329575	3L_21329575_SNP [dm3] 3L_21336475_SNP [dm6]	C	G	1.488e^-4	0.905	NON_SYNONYMOUS_CODING CG7338	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	6905471	X_6905471_SNP [dm3] X_7011438_SNP [dm6]	A	G	1.497e^-4	0.905	UTR_5_PRIME CG32736 & 1 other UPSTREAM cm DOWNSTREAM CG3032 INTRON CG32736 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	10817274	3R_10817274_SNP [dm3] 3R_14991552_SNP [dm6]	A	C	1.510e^-4	0.905	INTERGENIC
3R	9948570	3R_9948570_SNP [dm3] 3R_14122848_SNP [dm6]	C	A	1.516e^-4	0.905	SYNONYMOUS_CODING twf UPSTREAM Abi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	10220539	3R_10220539_SNP [dm3] 3R_14394817_SNP [dm6]	C	T	1.518e^-4	0.905	SYNONYMOUS_CODING cv-c	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11116750	3L_11116750_DEL [dm3] 3L_11123650_DEL [dm6]	TTT	T	1.524e^-4	0.905	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	20791671	3L_20791671_SNP [dm3] 3L_20798571_SNP [dm6]	T	A	1.526e^-4	0.905	UPSTREAM CG4365 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	15438834	2R_15438834_SNP [dm3] 2R_19551329_SNP [dm6]	C	T	1.534e^-4	0.905	UPSTREAM CG43111 INTRON sm
2R	9722905	2R_9722905_SNP [dm3] 2R_13835400_SNP [dm6]	G	A	1.538e^-4	0.905	UPSTREAM CG6337 INTERGENIC
3L	13335168	3L_13335168_SNP [dm3] 3L_13342068_SNP [dm6]	A	G	1.542e^-4	0.905	INTERGENIC
3L	11124419	3L_11124419_SNP [dm3] 3L_11131319_SNP [dm6]	G	T	1.549e^-4	0.905	UTR_3_PRIME nol DOWNSTREAM CG32074 INTRON CG42575
3L	11124420	3L_11124420_SNP [dm3] 3L_11131320_SNP [dm6]	G	A	1.549e^-4	0.905	UTR_3_PRIME nol DOWNSTREAM CG32074 INTRON CG42575
3L	21255959	3L_21255959_SNP [dm3] 3L_21262859_SNP [dm6]	C	T	1.555e^-4	0.905	INTRON Eip78C	TF binding site mE1_TFBS_cad
2R	16690130	2R_16690130_SNP [dm3] 2R_20802625_SNP [dm6]	A	C	1.556e^-4	0.905	INTERGENIC
X	9908164	X_9908164_SNP [dm3] X_10014131_SNP [dm6]	A	C	1.558e^-4	0.905	UTR_3_PRIME CG2990
3R	6685439	3R_6685439_SNP [dm3] 3R_10859717_SNP [dm6]	T	C	1.569e^-4	0.905	SYNONYMOUS_CODING CG14694 DOWNSTREAM CG6574	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	11156104	2R_11156104_SNP [dm3] 2R_15268599_SNP [dm6]	T	G	1.571e^-4	0.905	INTRON Trpm
2R	20052822	2R_20052822_SNP [dm3] 2R_24165299_SNP [dm6]	G	A	1.577e^-4	0.905	INTRON CG3328
2R	20256904	2R_20256904_SNP [dm3] 2R_24369381_SNP [dm6]	A	C	1.578e^-4	0.905	INTRON bs & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3510368	3L_3510368_SNP [dm3] 3L_3510368_SNP [dm6]	A	T	1.580e^-4	0.905	UTR_3_PRIME CG42324 DOWNSTREAM ImpE2
2R	15438759	2R_15438759_SNP [dm3] 2R_19551254_SNP [dm6]	G	A	1.601e^-4	0.913	UPSTREAM CG43111 INTRON sm
3R	19310976	3R_19310976_SNP [dm3] 3R_23485254_SNP [dm6]	T	G	1.606e^-4	0.913	NON_SYNONYMOUS_CODING Ir94g UPSTREAM CR44324	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15393509	3R_15393509_SNP [dm3] 3R_19567787_SNP [dm6]	A	G	1.630e^-4	0.913	INTRON Dys	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	11117280	3L_11117280_SNP [dm3] 3L_11124180_SNP [dm6]	G	T	1.632e^-4	0.913	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	2353091	3L_2353091_SNP [dm3] 3L_2353091_SNP [dm6]	G	C	1.642e^-4	0.913	INTERGENIC
X	12722108	X_12722108_SNP [dm3] X_12828075_SNP [dm6]	A	T	1.643e^-4	0.913	INTRON Pde9
3L	22843153	3L_22843153_SNP [dm3] 3L_22850053_SNP [dm6]	T	C	1.645e^-4	0.913	UPSTREAM CR43426 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	24579641	3R_24579641_SNP [dm3] 3R_28753919_SNP [dm6]	C	A	1.650e^-4	0.913	INTERGENIC	TF binding site mE1_TFBS_inv
3L	6535050	3L_6535050_SNP [dm3] 3L_6541950_SNP [dm6]	T	C	1.653e^-4	0.913	INTRON sfl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14600799	3R_14600799_SNP [dm3] 3R_18775077_SNP [dm6]	A	C	1.653e^-4	0.913	INTRON CG7720
3L	13291651	3L_13291651_SNP [dm3] 3L_13298551_SNP [dm6]	C	T	1.655e^-4	0.913	UPSTREAM CR45255 DOWNSTREAM CR45253 & 1 other EXON CR45254	TF binding site BDTNP1_TFBS_prd
3R	27189997	3R_27189997_SNP [dm3] 3R_31364275_SNP [dm6]	C	A	1.664e^-4	0.913	INTRON CG34347
3L	7633213	3L_7633213_SNP [dm3] 3L_7640113_SNP [dm6]	A	G	1.672e^-4	0.913	DOWNSTREAM CG33275 & 2 others INTRON CG33276	TF binding site mE1_TFBS_Ubx
2L	3553012	2L_3553012_SNP [dm3] 2L_3553012_SNP [dm6]	G	T	1.679e^-4	0.913	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	6801181	2R_6801181_SNP [dm3] 2R_10913676_SNP [dm6]	C	A	1.691e^-4	0.913	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	13895159	3R_13895159_SNP [dm3] 3R_18069437_SNP [dm6]	A	C	1.692e^-4	0.913	INTERGENIC
X	4433154	X_4433154_SNP [dm3] X_4539121_SNP [dm6]	C	T	1.695e^-4	0.913	SYNONYMOUS_CODING rb INTRON CR32773	TF binding site mE1_TFBS_sens
3L	19386848	3L_19386848_SNP [dm3] 3L_19393748_SNP [dm6]	G	T	1.708e^-4	0.913	INTRON CG32206
2R	10829669	2R_10829669_SNP [dm3] 2R_14942164_SNP [dm6]	T	G	1.732e^-4	0.913	UPSTREAM CG10257 INTERGENIC
2L	2965147	2L_2965147_SNP [dm3] 2L_2965147_SNP [dm6]	A	G	1.734e^-4	0.913	UTR_3_PRIME Rbp9 DOWNSTREAM Rbp9
3L	12357069	3L_12357069_SNP [dm3] 3L_12363969_SNP [dm6]	C	A	1.740e^-4	0.913	INTERGENIC
3L	5430349	3L_5430349_INS [dm3] 3L_5437249_INS [dm6]	T	TT	1.747e^-4	0.913	INTRON CG34391
3L	7521329	3L_7521329_SNP [dm3] 3L_7528229_SNP [dm6]	A	T	1.760e^-4	0.913	UPSTREAM lqf DOWNSTREAM ltl INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3003705	3L_3003705_SNP [dm3] 3L_3003705_SNP [dm6]	A	T	1.773e^-4	0.913	UTR_5_PRIME FMRFaR INTRON FMRFaR
2L	7391897	2L_7391897_SNP [dm3] 2L_7391897_SNP [dm6]	G	A	1.779e^-4	0.913	SYNONYMOUS_CODING CG5160 DOWNSTREAM gudu
3L	11112363	3L_11112363_SNP [dm3] 3L_11119263_SNP [dm6]	G	A	1.786e^-4	0.913	UTR_5_PRIME fd68A UPSTREAM fd68A INTRON fd68A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	12486790	2L_12486790_SNP [dm3] 2L_12486790_SNP [dm6]	A	G	1.789e^-4	0.913	INTRON bun
X	7445674	X_7445674_SNP [dm3] X_7551641_SNP [dm6]	G	A	1.798e^-4	0.913	INTERGENIC
3R	7944606	3R_7944606_SNP [dm3] 3R_12118884_SNP [dm6]	A	T	1.805e^-4	0.913	INTERGENIC
3L	5399535	3L_5399535_SNP [dm3] 3L_5406435_SNP [dm6]	T	A	1.821e^-4	0.913	INTERGENIC
2L	11151218	2L_11151218_SNP [dm3] 2L_11151218_SNP [dm6]	A	C	1.841e^-4	0.913	DOWNSTREAM CG6287 INTERGENIC	TF binding site mE1_TFBS_kn
2L	7391721	2L_7391721_SNP [dm3] 2L_7391721_SNP [dm6]	T	C	1.849e^-4	0.913	SYNONYMOUS_CODING CG5160 DOWNSTREAM gudu
3L	13335791	3L_13335791_SNP [dm3] 3L_13342691_SNP [dm6]	A	T	1.877e^-4	0.913	DOWNSTREAM CR44559 INTERGENIC
3L	11663985	3L_11663985_SNP [dm3] 3L_11670885_SNP [dm6]	G	A	1.877e^-4	0.913	INTRON CG32085
3R	22563163	3R_22563163_SNP [dm3] 3R_26737441_SNP [dm6]	T	C	1.883e^-4	0.913	UPSTREAM CG14247 INTERGENIC
2R	9960008	2R_9960008_SNP [dm3] 2R_14072503_SNP [dm6]	G	A	1.890e^-4	0.913	INTRON Prosap	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	5219417	3R_5219417_SNP [dm3] 3R_9393695_SNP [dm6]	G	A	1.895e^-4	0.913	INTRON FER	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3R	17771072	3R_17771072_SNP [dm3] 3R_21945350_SNP [dm6]	T	C	1.899e^-4	0.913	INTERGENIC
2R	20518050	2R_20518050_SNP [dm3] 2R_24630527_SNP [dm6]	A	T	1.903e^-4	0.913	UPSTREAM Cyp9c1 DOWNSTREAM CR43787 INTRON CG13594
2L	22250640	2L_22250640_SNP [dm3] 2L_22250640_SNP [dm6]	T	C	1.905e^-4	0.913	NON_SYNONYMOUS_CODING Tif-IA
3L	11116915	3L_11116915_SNP [dm3] 3L_11123815_SNP [dm6]	T	C	1.915e^-4	0.913	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2052427	3L_2052427_SNP [dm3] 3L_2052427_SNP [dm6]	A	G	1.915e^-4	0.913	INTRON sls
3R	20948920	3R_20948920_SNP [dm3] 3R_25123198_SNP [dm6]	T	C	1.916e^-4	0.913	UPSTREAM vig2 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	22562952	3R_22562952_SNP [dm3] 3R_26737230_SNP [dm6]	G	C	1.921e^-4	0.913	UPSTREAM CG6403 & 1 other INTERGENIC
3L	11117038	3L_11117038_SNP [dm3] 3L_11123938_SNP [dm6]	T	A	1.928e^-4	0.913	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11117246	3L_11117246_SNP [dm3] 3L_11124146_SNP [dm6]	C	T	1.928e^-4	0.913	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11117286	3L_11117286_SNP [dm3] 3L_11124186_SNP [dm6]	G	T	1.928e^-4	0.913	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	12129782	3L_12129782_SNP [dm3] 3L_12136682_SNP [dm6]	C	T	1.928e^-4	0.913	UTR_5_PRIME CG5645 UPSTREAM Atg12 DOWNSTREAM l_3_neo18	TF binding site mE1_TFBS_cad
2R	18597225	2R_18597225_SNP [dm3] 2R_22709720_SNP [dm6]	C	T	1.949e^-4	0.913	SYNONYMOUS_CODING CG30275 UTR_3_PRIME CG30275
2L	15294043	2L_15294043_SNP [dm3] 2L_15294043_SNP [dm6]	C	A	1.952e^-4	0.913	UTR_3_PRIME ms_2_35Ci DOWNSTREAM ms_2_35Ci
3L	4884282	3L_4884282_INS [dm3] 3L_4884282_INS [dm6]	T	TTACAT	1.953e^-4	0.913	INTRON CG17150
2L	3411821	2L_3411821_SNP [dm3] 2L_3411821_SNP [dm6]	A	G	1.956e^-4	0.913	DOWNSTREAM CG8840 INTRON pgant2
2L	12490032	2L_12490032_SNP [dm3] 2L_12490032_SNP [dm6]	G	A	1.959e^-4	0.913	INTRON bun	TF binding site BDTNP1_TFBS_twi
3L	20189356	3L_20189356_SNP [dm3] 3L_20196256_SNP [dm6]	G	C	1.970e^-4	0.913	INTRON CG42674
2L	9959156	2L_9959156_SNP [dm3] 2L_9959156_SNP [dm6]	T	A	1.975e^-4	0.913	SYNONYMOUS_CODING CG4658 DOWNSTREAM CG5850 & 1 other INTRON CG4658
2L	9959167	2L_9959167_SNP [dm3] 2L_9959167_SNP [dm6]	T	C	1.975e^-4	0.913	NON_SYNONYMOUS_CODING CG4658 DOWNSTREAM CG5850 & 1 other INTRON CG4658
3R	22562957	3R_22562957_SNP [dm3] 3R_26737235_SNP [dm6]	T	C	1.986e^-4	0.913	UPSTREAM CG6403 & 1 other INTERGENIC
3L	4398834	3L_4398834_SNP [dm3] 3L_4398834_SNP [dm6]	A	T	1.996e^-4	0.913	INTRON slow
3L	4884316	3L_4884316_SNP [dm3] 3L_4884316_SNP [dm6]	A	G	1.998e^-4	0.913	INTRON CG17150
X	4589906	X_4589906_SNP [dm3] X_4695873_SNP [dm6]	T	G	2.004e^-4	0.913	INTRON ctp
3L	17951750	3L_17951750_SNP [dm3] 3L_17958650_SNP [dm6]	C	T	2.005e^-4	0.913	INTRON Eip75B
X	17222708	X_17222708_SNP [dm3] X_17328675_SNP [dm6]	C	A	2.014e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	15302823	3R_15302823_INS [dm3] 3R_19477101_INS [dm6]	T	TT	2.017e^-4	0.913	INTRON Dys
2R	16419246	2R_16419246_DEL [dm3] 2R_20531741_DEL [dm6]	TCTT	T	2.024e^-4	0.913	UPSTREAM CR44651 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9664150	2R_9664150_SNP [dm3] 2R_13776645_SNP [dm6]	T	C	2.026e^-4	0.913	INTRON Cpr50Ca
X	2713502	X_2713502_SNP [dm3] X_2819469_SNP [dm6]	A	T	2.035e^-4	0.913	INTRON kirre
3L	5755955	3L_5755955_SNP [dm3] 3L_5762855_SNP [dm6]	G	A	2.044e^-4	0.913	DOWNSTREAM snoRNA:Psi18S-1397 & 2 others INTRON CG10576
2L	6716099	2L_6716099_SNP [dm3] 2L_6716099_SNP [dm6]	C	G	2.050e^-4	0.913	UTR_5_PRIME AkhR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb
2R	3238609	2R_3238609_MNP [dm3] 2R_7351104_MNP [dm6]	GTC	TGG	2.054e^-4	0.913	INTRON Dscam1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	1935113	2L_1935113_SNP [dm3] 2L_1935113_SNP [dm6]	C	T	2.063e^-4	0.913	SYNONYMOUS_CODING CG7337	TF binding site mE1_TFBS_cad
3R	6590241	3R_6590241_SNP [dm3] 3R_10764519_SNP [dm6]	C	T	2.076e^-4	0.913	NON_SYNONYMOUS_CODING Cap-H2
3L	22900231	3L_22900231_INS [dm3] 3L_22907131_INS [dm6]	C	CGAC	2.079e^-4	0.913	INTERGENIC
3R	21851676	3R_21851676_SNP [dm3] 3R_26025954_SNP [dm6]	G	C	2.082e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3L	7521324	3L_7521324_SNP [dm3] 3L_7528224_SNP [dm6]	T	G	2.094e^-4	0.913	UPSTREAM lqf DOWNSTREAM ltl INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	12491349	2L_12491349_SNP [dm3] 2L_12491349_SNP [dm6]	A	T	2.095e^-4	0.913	INTRON bun
3R	10220557	3R_10220557_SNP [dm3] 3R_14394835_SNP [dm6]	G	A	2.102e^-4	0.913	SYNONYMOUS_CODING cv-c	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	17222613	X_17222613_SNP [dm3] X_17328580_SNP [dm6]	A	T	2.103e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	17222619	X_17222619_SNP [dm3] X_17328586_SNP [dm6]	A	G	2.103e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	17222626	X_17222626_SNP [dm3] X_17328593_SNP [dm6]	T	G	2.103e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	17222634	X_17222634_SNP [dm3] X_17328601_SNP [dm6]	C	T	2.103e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	17222643	X_17222643_SNP [dm3] X_17328610_SNP [dm6]	T	A	2.103e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	17222657	X_17222657_SNP [dm3] X_17328624_SNP [dm6]	A	G	2.103e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	6903921	3R_6903921_SNP [dm3] 3R_11078199_SNP [dm6]	T	C	2.108e^-4	0.913	INTERGENIC
2L	3553070	2L_3553070_SNP [dm3] 2L_3553070_SNP [dm6]	A	G	2.132e^-4	0.913	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	3793037	3L_3793037_SNP [dm3] 3L_3793037_SNP [dm6]	T	A	2.134e^-4	0.913	INTRON CG32264
3R	25155824	3R_25155824_SNP [dm3] 3R_29330102_SNP [dm6]	C	T	2.139e^-4	0.913	INTERGENIC
3R	25155825	3R_25155825_SNP [dm3] 3R_29330103_SNP [dm6]	G	C	2.139e^-4	0.913	INTERGENIC
3L	7641997	3L_7641997_SNP [dm3] 3L_7648897_SNP [dm6]	C	A	2.145e^-4	0.913	INTERGENIC
3L	8189163	3L_8189163_SNP [dm3] 3L_8196063_SNP [dm6]	C	T	2.145e^-4	0.913	NON_SYNONYMOUS_CODING MED24 UTR_3_PRIME Ubc12 DOWNSTREAM Ubc12
2L	7392474	2L_7392474_SNP [dm3] 2L_7392474_SNP [dm6]	C	T	2.147e^-4	0.913	INTRON CG5160
2L	7392484	2L_7392484_SNP [dm3] 2L_7392484_SNP [dm6]	A	G	2.147e^-4	0.913	INTRON CG5160
2L	7392514	2L_7392514_INS [dm3] 2L_7392514_INS [dm6]	T	TA	2.147e^-4	0.913	INTRON CG5160
2L	7392518	2L_7392518_SNP [dm3] 2L_7392518_SNP [dm6]	C	A	2.147e^-4	0.913	INTRON CG5160
2L	7392551	2L_7392551_SNP [dm3] 2L_7392551_SNP [dm6]	T	A	2.147e^-4	0.913	INTRON CG5160
3R	11475590	3R_11475590_SNP [dm3] 3R_15649868_SNP [dm6]	A	G	2.150e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7392808	2L_7392808_SNP [dm3] 2L_7392808_SNP [dm6]	A	G	2.153e^-4	0.913	INTRON CG5160
2R	16984982	2R_16984982_SNP [dm3] 2R_21097477_SNP [dm6]	T	G	2.155e^-4	0.913	UPSTREAM CG34396 & 1 other INTRON CG34396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	10266263	2R_10266263_SNP [dm3] 2R_14378758_SNP [dm6]	C	T	2.155e^-4	0.913	INTRON Dh44-R1
2R	10266265	2R_10266265_SNP [dm3] 2R_14378760_SNP [dm6]	G	T	2.155e^-4	0.913	INTRON Dh44-R1
3L	7521363	3L_7521363_SNP [dm3] 3L_7528263_SNP [dm6]	C	A	2.160e^-4	0.913	UPSTREAM lqf DOWNSTREAM ltl INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	6590222	3R_6590222_SNP [dm3] 3R_10764500_SNP [dm6]	C	T	2.175e^-4	0.913	SYNONYMOUS_CODING Cap-H2
X	12035662	X_12035662_SNP [dm3] X_12141629_SNP [dm6]	C	A	2.188e^-4	0.913	INTRON Ten-a
2R	12767680	2R_12767680_DEL [dm3] 2R_16880175_DEL [dm6]	GT	G	2.197e^-4	0.913	UPSTREAM CG6472 INTRON CG8910
3L	3617303	3L_3617303_SNP [dm3] 3L_3617303_SNP [dm6]	A	C	2.198e^-4	0.913	DOWNSTREAM CG10357 INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad
3R	10528857	3R_10528857_SNP [dm3] 3R_14703135_SNP [dm6]	G	A	2.203e^-4	0.913	SYNONYMOUS_CODING kibra	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	20239862	2R_20239862_SNP [dm3] 2R_24352339_SNP [dm6]	T	C	2.211e^-4	0.913	UPSTREAM CG44812 INTRON bs EXON CR44811	TF binding site mE1_TFBS_chinmo
3L	18201225	3L_18201225_SNP [dm3] 3L_18208125_SNP [dm6]	A	G	2.242e^-4	0.913	INTERGENIC
3R	14025513	3R_14025513_SNP [dm3] 3R_18199791_SNP [dm6]	A	T	2.244e^-4	0.913	UPSTREAM CG7985 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	21269534	3L_21269534_SNP [dm3] 3L_21276434_SNP [dm6]	A	T	2.245e^-4	0.913	UPSTREAM AcCoAS INTRON AcCoAS	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	11992844	2R_11992844_SNP [dm3] 2R_16105339_SNP [dm6]	A	T	2.247e^-4	0.913	INTRON Rho1	TF binding site BDTNP1_TFBS_dl
2R	11992847	2R_11992847_SNP [dm3] 2R_16105342_SNP [dm6]	C	T	2.247e^-4	0.913	INTRON Rho1	TF binding site BDTNP1_TFBS_dl
3L	18789152	3L_18789152_SNP [dm3] 3L_18796052_SNP [dm6]	G	C	2.254e^-4	0.913	INTRON ftz-f1
3L	7403883	3L_7403883_SNP [dm3] 3L_7410783_SNP [dm6]	A	T	2.265e^-4	0.913	INTERGENIC
3L	21968136	3L_21968136_DEL [dm3] 3L_21975036_DEL [dm6]	AA	A	2.270e^-4	0.913	INTRON CG7470
2R	12170376	2R_12170376_SNP [dm3] 2R_16282871_SNP [dm6]	G	A	2.273e^-4	0.913	UTR_5_PRIME CG7755 UPSTREAM CG9068	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10800100	3R_10800100_SNP [dm3] 3R_14974378_SNP [dm6]	C	G	2.282e^-4	0.913	INTERGENIC
3R	21650265	3R_21650265_SNP [dm3] 3R_25824543_SNP [dm6]	G	A	2.301e^-4	0.913	EXON CR44949
3L	19386622	3L_19386622_SNP [dm3] 3L_19393522_SNP [dm6]	C	A	2.303e^-4	0.913	INTRON CG32206
3L	17897674	3L_17897674_SNP [dm3] 3L_17904574_SNP [dm6]	G	T	2.329e^-4	0.913	INTRON Prestin
2R	15188894	2R_15188894_SNP [dm3] 2R_19301389_SNP [dm6]	C	T	2.333e^-4	0.913	INTRON Tab2	TF binding site mE1_TFBS_inv
2R	15188897	2R_15188897_SNP [dm3] 2R_19301392_SNP [dm6]	A	G	2.333e^-4	0.913	INTRON Tab2	TF binding site mE1_TFBS_inv
3R	14334693	3R_14334693_SNP [dm3] 3R_18508971_SNP [dm6]	T	C	2.338e^-4	0.913	INTRON fru
X	20563163	X_20563163_SNP [dm3] X_20692136_SNP [dm6]	C	T	2.350e^-4	0.913	INTRON run	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3L	17710844	3L_17710844_SNP [dm3] 3L_17717744_SNP [dm6]	G	A	2.351e^-4	0.913	INTRON Ccn
3L	7650152	3L_7650152_SNP [dm3] 3L_7657052_SNP [dm6]	C	T	2.358e^-4	0.913	NON_SYNONYMOUS_CODING Ank2 INTRON CG32373 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	7650192	3L_7650192_SNP [dm3] 3L_7657092_SNP [dm6]	C	T	2.358e^-4	0.913	SYNONYMOUS_CODING Ank2 INTRON CG32373 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	12359148	3L_12359148_SNP [dm3] 3L_12366048_SNP [dm6]	T	C	2.360e^-4	0.913	INTERGENIC
2L	221136	2L_221136_SNP [dm3] 2L_221136_SNP [dm6]	C	G	2.384e^-4	0.913	INTRON kis	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
2R	9664167	2R_9664167_SNP [dm3] 2R_13776662_SNP [dm6]	T	C	2.388e^-4	0.913	INTRON Cpr50Ca
X	22181843	X_22181843_INS [dm3] X_22780007_INS [dm6]	T	TCTCTGGCCTCGCTGGCGGT...	2.396e^-4	0.913	INTRON CR44997
X	22181857	X_22181857_SNP [dm3] X_22780021_SNP [dm6]	A	G	2.396e^-4	0.913	INTRON CR44997
X	6093993	X_6093993_SNP [dm3] X_6199960_SNP [dm6]	G	A	2.410e^-4	0.913	UPSTREAM CG43090 DOWNSTREAM vanin-like INTERGENIC
3L	22493025	3L_22493025_DEL [dm3] 3L_22499925_DEL [dm6]	AA	A	2.416e^-4	0.913	INTERGENIC
X	3658363	X_3658363_INS [dm3] X_3764330_INS [dm6]	A	AA	2.418e^-4	0.913	INTRON tlk	TF binding site BDTNP1_TFBS_dl
2L	11151164	2L_11151164_SNP [dm3] 2L_11151164_SNP [dm6]	C	T	2.420e^-4	0.913	DOWNSTREAM CG6287 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	14434394	2L_14434394_SNP [dm3] 2L_14434394_SNP [dm6]	C	A	2.421e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	5865833	X_5865833_SNP [dm3] X_5971800_SNP [dm6]	A	T	2.434e^-4	0.913	INTRON Grip
3R	22723940	3R_22723940_SNP [dm3] 3R_26898218_SNP [dm6]	G	A	2.440e^-4	0.913	INTRON T48	regulatory region REDfly_CRMs
3L	6020429	3L_6020429_SNP [dm3] 3L_6027329_SNP [dm6]	G	C	2.449e^-4	0.913	INTERGENIC
3R	6638904	3R_6638904_SNP [dm3] 3R_10813182_SNP [dm6]	A	G	2.456e^-4	0.913	NON_SYNONYMOUS_CODING CG14693 UTR_3_PRIME CG14693 DOWNSTREAM CG14693	TF binding site mE1_TFBS_HSA
3R	6639075	3R_6639075_SNP [dm3] 3R_10813353_SNP [dm6]	T	A	2.456e^-4	0.913	DOWNSTREAM CG14693 INTRON CG14693
3R	6639105	3R_6639105_SNP [dm3] 3R_10813383_SNP [dm6]	A	G	2.456e^-4	0.913	DOWNSTREAM CG14693 INTRON CG14693
2R	8944185	2R_8944185_SNP [dm3] 2R_13056680_SNP [dm6]	G	A	2.476e^-4	0.913	UTR_3_PRIME Drl-2
X	17222757	X_17222757_SNP [dm3] X_17328724_SNP [dm6]	G	T	2.486e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	20310010	3R_20310010_INS [dm3] 3R_24484288_INS [dm6]	A	AAGCGCAACATAAA...	2.489e^-4	0.913	INTERGENIC
3R	20310014	3R_20310014_SNP [dm3] 3R_24484292_SNP [dm6]	A	C	2.489e^-4	0.913	INTERGENIC
3L	7638062	3L_7638062_SNP [dm3] 3L_7644962_SNP [dm6]	A	T	2.498e^-4	0.913	INTERGENIC
3R	23467722	3R_23467722_SNP [dm3] 3R_27642000_SNP [dm6]	C	T	2.503e^-4	0.913	UTR_3_PRIME tau DOWNSTREAM mir-1001 INTRON tau
3L	16996079	3L_16996079_SNP [dm3] 3L_17002979_SNP [dm6]	A	G	2.504e^-4	0.913	UPSTREAM CG3764 INTRON CG3764
3L	2030504	3L_2030504_SNP [dm3] 3L_2030504_SNP [dm6]	G	C	2.512e^-4	0.913	INTERGENIC
2L	9152379	2L_9152379_SNP [dm3] 2L_9152379_SNP [dm6]	A	G	2.515e^-4	0.913	INTRON CG32982
3L	15301670	3L_15301670_SNP [dm3] 3L_15308570_SNP [dm6]	C	T	2.526e^-4	0.913	SYNONYMOUS_CODING CG7255
3L	7714894	3L_7714894_SNP [dm3] 3L_7721794_SNP [dm6]	C	A	2.533e^-4	0.913	DOWNSTREAM CG7457 & 1 other INTRON CG32373
2R	10266327	2R_10266327_SNP [dm3] 2R_14378822_SNP [dm6]	C	T	2.534e^-4	0.913	INTRON Dh44-R1
X	3663186	X_3663186_SNP [dm3] X_3769153_SNP [dm6]	C	G	2.540e^-4	0.913	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11595799	3L_11595799_SNP [dm3] 3L_11602699_SNP [dm6]	G	A	2.545e^-4	0.913	UTR_5_PRIME CG7368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	25798771	3R_25798771_SNP [dm3] 3R_29973049_SNP [dm6]	G	A	2.550e^-4	0.913	INTERGENIC
2R	11992835	2R_11992835_SNP [dm3] 2R_16105330_SNP [dm6]	G	A	2.555e^-4	0.913	INTRON Rho1	TF binding site BDTNP1_TFBS_dl
3R	6591817	3R_6591817_SNP [dm3] 3R_10766095_SNP [dm6]	T	G	2.558e^-4	0.913	SYNONYMOUS_CODING Cap-H2 UTR_3_PRIME Cap-H2 DOWNSTREAM TfIIFbeta
3R	6591819	3R_6591819_SNP [dm3] 3R_10766097_SNP [dm6]	G	A	2.558e^-4	0.913	NON_SYNONYMOUS_CODING Cap-H2 UTR_3_PRIME Cap-H2 DOWNSTREAM TfIIFbeta
3R	26073203	3R_26073203_SNP [dm3] 3R_30247481_SNP [dm6]	G	A	2.559e^-4	0.913	UPSTREAM CG9733 DOWNSTREAM tRNA:CR31383 INTERGENIC
3R	21794488	3R_21794488_DEL [dm3] 3R_25968766_DEL [dm6]	GG	G	2.560e^-4	0.913	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	14346359	2R_14346359_SNP [dm3] 2R_18458854_SNP [dm6]	A	C	2.562e^-4	0.913	DOWNSTREAM CG30116 INTRON CG30116
3R	20325747	3R_20325747_SNP [dm3] 3R_24500025_SNP [dm6]	G	A	2.565e^-4	0.913	INTERGENIC
3L	11414881	3L_11414881_SNP [dm3] 3L_11421781_SNP [dm6]	G	A	2.572e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19788814	2R_19788814_SNP [dm3] 2R_23901291_SNP [dm6]	G	A	2.586e^-4	0.913	SYNONYMOUS_CODING Lpt
3R	7722172	3R_7722172_SNP [dm3] 3R_11896450_SNP [dm6]	C	T	2.599e^-4	0.913	SYNONYMOUS_CODING Cad87A
3R	22750306	3R_22750306_SNP [dm3] 3R_26924584_SNP [dm6]	A	G	2.599e^-4	0.913	INTRON sda
3R	25798613	3R_25798613_SNP [dm3] 3R_29972891_SNP [dm6]	G	A	2.608e^-4	0.913	INTERGENIC
X	22182384	X_22182384_SNP [dm3] X_22780548_SNP [dm6]	A	C	2.611e^-4	0.913	INTRON CR44997	transposable element FlyBase
3L	1257923	3L_1257923_SNP [dm3] 3L_1257923_SNP [dm6]	T	C	2.618e^-4	0.913	INTRON CG9134
3L	18803537	3L_18803537_SNP [dm3] 3L_18810437_SNP [dm6]	G	A	2.620e^-4	0.913	INTRON CG14073	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
X	14610624	X_14610624_SNP [dm3] X_14716591_SNP [dm6]	T	G	2.620e^-4	0.913	INTRON NetB
X	9908165	X_9908165_SNP [dm3] X_10014132_SNP [dm6]	G	A	2.624e^-4	0.913	UTR_3_PRIME CG2990
X	5880471	X_5880471_SNP [dm3] X_5986438_SNP [dm6]	G	A	2.629e^-4	0.913	UTR_3_PRIME Grip
3L	7521720	3L_7521720_SNP [dm3] 3L_7528620_SNP [dm6]	T	A	2.642e^-4	0.913	UPSTREAM lqf DOWNSTREAM ltl INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	14201232	2R_14201232_SNP [dm3] 2R_18313727_SNP [dm6]	T	C	2.644e^-4	0.913	INTRON sbb	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
X	11424693	X_11424693_SNP [dm3] X_11530660_SNP [dm6]	A	T	2.647e^-4	0.913	INTRON Drak
2R	16567608	2R_16567608_SNP [dm3] 2R_20680103_SNP [dm6]	T	C	2.648e^-4	0.913	INTERGENIC
3R	25789808	3R_25789808_DEL [dm3] 3R_29964086_DEL [dm6]	AGCTTTCGGCCGCA...	A	2.651e^-4	0.913	INTRON TkR99D
2R	11900213	2R_11900213_SNP [dm3] 2R_16012708_SNP [dm6]	A	C	2.662e^-4	0.913	SYNONYMOUS_CODING CG8389	TF binding site BDTNP1_TFBS_sna
2R	19892831	2R_19892831_SNP [dm3] 2R_24005308_SNP [dm6]	A	G	2.663e^-4	0.913	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	27162085	3R_27162085_SNP [dm3] 3R_31336363_SNP [dm6]	G	A	2.670e^-4	0.913	INTRON CG34347
2R	5688585	2R_5688585_SNP [dm3] 2R_9801080_SNP [dm6]	A	T	2.674e^-4	0.913	INTRON CG1688
3R	25138178	3R_25138178_SNP [dm3] 3R_29312456_SNP [dm6]	T	A	2.677e^-4	0.913	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_sens
X	6905421	X_6905421_SNP [dm3] X_7011388_SNP [dm6]	A	G	2.683e^-4	0.913	UTR_5_PRIME CG32736 & 1 other UPSTREAM CG32736 & 2 others DOWNSTREAM CG3032	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	17897568	3L_17897568_SNP [dm3] 3L_17904468_SNP [dm6]	T	A	2.687e^-4	0.913	INTRON Prestin
3L	11122095	3L_11122095_SNP [dm3] 3L_11128995_SNP [dm6]	T	A	2.696e^-4	0.913	UTR_5_PRIME CG42575 UPSTREAM CG42575
X	3663189	X_3663189_SNP [dm3] X_3769156_SNP [dm6]	T	C	2.704e^-4	0.913	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	21252913	3L_21252913_SNP [dm3] 3L_21259813_SNP [dm6]	A	G	2.705e^-4	0.913	INTRON Eip78C
2R	9661554	2R_9661554_SNP [dm3] 2R_13774049_SNP [dm6]	A	G	2.706e^-4	0.913	INTRON Cpr50Ca	TF binding site mE1_TFBS_inv
X	22182275	X_22182275_SNP [dm3] X_22780439_SNP [dm6]	G	T	2.712e^-4	0.913	INTRON CR44997	transposable element FlyBase
3L	11427311	3L_11427311_SNP [dm3] 3L_11434211_SNP [dm6]	T	C	2.712e^-4	0.913	DOWNSTREAM CG6149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	5539556	X_5539556_SNP [dm3] X_5645523_SNP [dm6]	A	T	2.716e^-4	0.913	INTRON CG42492
X	6890022	X_6890022_SNP [dm3] X_6995989_SNP [dm6]	C	T	2.718e^-4	0.913	INTRON Inx7 EXON CR43837	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6890030	X_6890030_SNP [dm3] X_6995997_SNP [dm6]	C	A	2.718e^-4	0.913	INTRON Inx7 EXON CR43837	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3703864	3R_3703864_SNP [dm3] 3R_7878142_SNP [dm6]	A	G	2.736e^-4	0.913	INTRON CG17816
X	19618346	X_19618346_SNP [dm3] X_19724313_SNP [dm6]	C	T	2.739e^-4	0.913	INTRON CG12531
3R	25798764	3R_25798764_SNP [dm3] 3R_29973042_SNP [dm6]	T	C	2.741e^-4	0.913	INTERGENIC
X	3910610	X_3910610_SNP [dm3] X_4016577_SNP [dm6]	T	C	2.745e^-4	0.913	INTERGENIC
3R	23209238	3R_23209238_SNP [dm3] 3R_27383516_SNP [dm6]	G	C	2.749e^-4	0.913	INTRON side
3L	13334663	3L_13334663_DEL [dm3] 3L_13341563_DEL [dm6]	TT	T	2.763e^-4	0.913	INTERGENIC
3R	25798826	3R_25798826_SNP [dm3] 3R_29973104_SNP [dm6]	T	C	2.763e^-4	0.913	INTERGENIC
3R	26982549	3R_26982549_SNP [dm3] 3R_31156827_SNP [dm6]	A	G	2.770e^-4	0.913	INTRON Gycbeta100B
2R	12086879	2R_12086879_SNP [dm3] 2R_16199374_SNP [dm6]	T	A	2.780e^-4	0.913	UTR_3_PRIME CG42837 & 1 other DOWNSTREAM shark
3L	11115534	3L_11115534_SNP [dm3] 3L_11122434_SNP [dm6]	C	T	2.788e^-4	0.913	SYNONYMOUS_CODING Ufd1-like UPSTREAM CG42575 DOWNSTREAM mRpL2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	11899533	2R_11899533_SNP [dm3] 2R_16012028_SNP [dm6]	G	T	2.790e^-4	0.913	SYNONYMOUS_CODING CG8389 UPSTREAM CG8388	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	12959953	2L_12959953_SNP [dm3] 2L_12959953_SNP [dm6]	G	C	2.790e^-4	0.913	INTERGENIC
2L	16658646	2L_16658646_SNP [dm3] 2L_16658646_SNP [dm6]	A	G	2.795e^-4	0.913	SYNONYMOUS_CODING CG42389	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12863199	3L_12863199_SNP [dm3] 3L_12870099_SNP [dm6]	A	G	2.797e^-4	0.913	INTERGENIC
2R	20006383	2R_20006383_SNP [dm3] 2R_24118860_SNP [dm6]	T	A	2.816e^-4	0.913	INTRON CG3257	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
X	12498701	X_12498701_SNP [dm3] X_12604668_SNP [dm6]	C	A	2.822e^-4	0.913	SYNONYMOUS_CODING Sec16	TF binding site mE1_TFBS_cad
X	17222660	X_17222660_SNP [dm3] X_17328627_SNP [dm6]	T	C	2.832e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	19508790	2L_19508790_SNP [dm3] 2L_19508790_SNP [dm6]	A	G	2.834e^-4	0.913	UPSTREAM CG10188 DOWNSTREAM CG10186 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	11900270	2R_11900270_SNP [dm3] 2R_16012765_SNP [dm6]	A	G	2.847e^-4	0.913	SYNONYMOUS_CODING CG8389	TF binding site BDTNP1_TFBS_sna
2R	12168740	2R_12168740_SNP [dm3] 2R_16281235_SNP [dm6]	C	T	2.847e^-4	0.913	SYNONYMOUS_CODING CG15705 DOWNSTREAM CG15704 & 1 other
2L	6680348	2L_6680348_SNP [dm3] 2L_6680348_SNP [dm6]	G	A	2.865e^-4	0.913	SPLICE_SITE_REGION Nhe3 SYNONYMOUS_CODING Nhe3
3L	6535073	3L_6535073_SNP [dm3] 3L_6541973_SNP [dm6]	A	T	2.867e^-4	0.913	INTRON sfl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12448916	2L_12448916_SNP [dm3] 2L_12448916_SNP [dm6]	A	C	2.870e^-4	0.913	SYNONYMOUS_CODING Oatp33Eb UPSTREAM CG5421
2L	12448934	2L_12448934_SNP [dm3] 2L_12448934_SNP [dm6]	C	A	2.870e^-4	0.913	SYNONYMOUS_CODING Oatp33Eb UPSTREAM CG5421
3L	4884225	3L_4884225_SNP [dm3] 3L_4884225_SNP [dm6]	C	T	2.875e^-4	0.913	INTRON CG17150
3L	4884231	3L_4884231_SNP [dm3] 3L_4884231_SNP [dm6]	A	G	2.875e^-4	0.913	INTRON CG17150
3L	4884234	3L_4884234_SNP [dm3] 3L_4884234_SNP [dm6]	T	C	2.875e^-4	0.913	INTRON CG17150
3L	4884366	3L_4884366_SNP [dm3] 3L_4884366_SNP [dm6]	G	C	2.875e^-4	0.913	INTRON CG17150
3L	19019014	3L_19019014_SNP [dm3] 3L_19025914_SNP [dm6]	C	T	2.887e^-4	0.913	INTRON nkd
3L	19019048	3L_19019048_SNP [dm3] 3L_19025948_SNP [dm6]	T	A	2.887e^-4	0.913	INTRON nkd
X	12626830	X_12626830_SNP [dm3] X_12732797_SNP [dm6]	T	A	2.889e^-4	0.913	INTRON Smr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
2L	7007087	2L_7007087_SNP [dm3] 2L_7007087_SNP [dm6]	T	C	2.890e^-4	0.913	INTRON uif	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	7007103	2L_7007103_SNP [dm3] 2L_7007103_SNP [dm6]	G	A	2.890e^-4	0.913	INTRON uif	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	14571736	2R_14571736_DEL [dm3] 2R_18684231_DEL [dm6]	AA	A	2.898e^-4	0.913	UTR_3_PRIME CG44433 UPSTREAM CG44434 & 1 other
3R	6629658	3R_6629658_SNP [dm3] 3R_10803936_SNP [dm6]	G	T	2.900e^-4	0.913	UPSTREAM CG14692 INTERGENIC
2L	7392540	2L_7392540_SNP [dm3] 2L_7392540_SNP [dm6]	G	C	2.903e^-4	0.913	INTRON CG5160
3L	22832990	3L_22832990_SNP [dm3] 3L_22839890_SNP [dm6]	A	G	2.916e^-4	0.913	UPSTREAM CR45659 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2L	16117642	2L_16117642_SNP [dm3] 2L_16117642_SNP [dm6]	T	C	2.931e^-4	0.913	INTERGENIC
3L	1076908	3L_1076908_SNP [dm3] 3L_1076908_SNP [dm6]	T	G	2.936e^-4	0.913	INTRON bab1
3L	18201193	3L_18201193_SNP [dm3] 3L_18208093_SNP [dm6]	G	A	2.938e^-4	0.913	INTERGENIC
2L	9123822	2L_9123822_SNP [dm3] 2L_9123822_SNP [dm6]	T	A	2.942e^-4	0.913	UPSTREAM CR44615 INTERGENIC
3L	674614	3L_674614_SNP [dm3] 3L_674614_SNP [dm6]	A	C	2.946e^-4	0.913	INTERGENIC
3L	21922083	3L_21922083_SNP [dm3] 3L_21928983_SNP [dm6]	A	G	2.948e^-4	0.913	UTR_3_PRIME mub
X	17831255	X_17831255_SNP [dm3] X_17937222_SNP [dm6]	A	C	2.951e^-4	0.913	INTRON Sh
2L	19357789	2L_19357789_SNP [dm3] 2L_19357789_SNP [dm6]	A	G	2.954e^-4	0.913	INTRON dnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	14325595	X_14325595_SNP [dm3] X_14431562_SNP [dm6]	C	A	2.957e^-4	0.913	INTRON dpr8
X	19386395	X_19386395_SNP [dm3] X_19492362_SNP [dm6]	C	T	2.964e^-4	0.913	UPSTREAM CG12203 & 1 other DOWNSTREAM CG12204 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
X	7445724	X_7445724_SNP [dm3] X_7551691_SNP [dm6]	A	C	2.965e^-4	0.913	INTERGENIC
2L	12437784	2L_12437784_SNP [dm3] 2L_12437784_SNP [dm6]	T	A	2.966e^-4	0.913	INTRON Elf	TF binding site mE1_TFBS_cad
2R	5689198	2R_5689198_SNP [dm3] 2R_9801693_SNP [dm6]	G	T	2.984e^-4	0.913	INTRON CG1688
3L	18822934	3L_18822934_SNP [dm3] 3L_18829834_SNP [dm6]	T	G	2.989e^-4	0.913	SYNONYMOUS_CODING Indy	TF binding site mE1_TFBS_cad
2L	9368527	2L_9368527_SNP [dm3] 2L_9368527_SNP [dm6]	T	C	2.992e^-4	0.913	DOWNSTREAM CG34181 INTERGENIC
3L	11122657	3L_11122657_SNP [dm3] 3L_11129557_SNP [dm6]	A	G	2.998e^-4	0.913	UTR_5_PRIME CG42575
3L	17941784	3L_17941784_SNP [dm3] 3L_17948684_SNP [dm6]	G	A	3.006e^-4	0.913	UPSTREAM CR45393 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	1446859	3L_1446859_SNP [dm3] 3L_1446859_SNP [dm6]	A	G	3.008e^-4	0.913	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14374322	3R_14374322_SNP [dm3] 3R_18548600_SNP [dm6]	G	C	3.009e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17222727	X_17222727_SNP [dm3] X_17328694_SNP [dm6]	C	A	3.016e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	21329260	3L_21329260_SNP [dm3] 3L_21336160_SNP [dm6]	A	G	3.020e^-4	0.913	SYNONYMOUS_CODING CG7338	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	9946325	3R_9946325_SNP [dm3] 3R_14120603_SNP [dm6]	C	A	3.033e^-4	0.913	SPLICE_SITE_REGION Abi INTRON Abi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12094551	3L_12094551_SNP [dm3] 3L_12101451_SNP [dm6]	A	T	3.042e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	5104499	2L_5104499_SNP [dm3] 2L_5104499_SNP [dm6]	T	C	3.047e^-4	0.913	INTRON Msp300
2R	1674113	2R_1674113_INS [dm3] 2R_5786608_INS [dm6]	A	TAG	3.049e^-4	0.913	INTERGENIC
X	11083961	X_11083961_SNP [dm3] X_11189928_SNP [dm6]	A	C	3.049e^-4	0.913	INTERGENIC
2R	4969071	2R_4969071_SNP [dm3] 2R_9081566_SNP [dm6]	G	A	3.061e^-4	0.913	SPLICE_SITE_REGION CG8083 UPSTREAM CNT1 INTRON CG8083
3L	17875819	3L_17875819_SNP [dm3] 3L_17882719_SNP [dm6]	T	C	3.063e^-4	0.913	UTR_3_PRIME CG7408 DOWNSTREAM CG5506 & 1 other
3L	19841325	3L_19841325_SNP [dm3] 3L_19848225_SNP [dm6]	G	T	3.069e^-4	0.913	UTR_5_PRIME Papss INTRON Papss	TF binding site mE1_TFBS_Trl
2L	12491435	2L_12491435_SNP [dm3] 2L_12491435_SNP [dm6]	A	T	3.082e^-4	0.913	INTRON bun
2L	14434264	2L_14434264_SNP [dm3] 2L_14434264_SNP [dm6]	A	T	3.093e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	3360169	X_3360169_SNP [dm3] X_3466136_SNP [dm6]	A	T	3.099e^-4	0.913	SYNONYMOUS_CODING CG12206 INTRON CR44999
X	6678972	X_6678972_SNP [dm3] X_6784939_SNP [dm6]	C	A	3.104e^-4	0.913	INTRON C3G
3R	6654674	3R_6654674_SNP [dm3] 3R_10828952_SNP [dm6]	C	T	3.121e^-4	0.913	INTRON Cad86C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	8435527	X_8435527_SNP [dm3] X_8541494_SNP [dm6]	G	T	3.125e^-4	0.913	INTRON Nrg
3L	752494	3L_752494_SNP [dm3] 3L_752494_SNP [dm6]	C	G	3.126e^-4	0.913	UTR_3_PRIME emc INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16933827	X_16933827_DEL [dm3] X_17039794_DEL [dm6]	CC	C	3.129e^-4	0.913	INTRON CG45002
2L	6895785	2L_6895785_SNP [dm3] 2L_6895785_SNP [dm6]	A	T	3.133e^-4	0.913	INTRON Nlg2
2R	18597234	2R_18597234_SNP [dm3] 2R_22709729_SNP [dm6]	G	A	3.136e^-4	0.913	SYNONYMOUS_CODING CG30275 UTR_3_PRIME CG30275
X	9908182	X_9908182_SNP [dm3] X_10014149_SNP [dm6]	G	A	3.139e^-4	0.913	UTR_3_PRIME CG2990
3R	6548979	3R_6548979_SNP [dm3] 3R_10723257_SNP [dm6]	A	G	3.142e^-4	0.913	INTERGENIC
2L	11807939	2L_11807939_SNP [dm3] 2L_11807939_SNP [dm6]	A	G	3.155e^-4	0.913	INTRON crol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
3L	21256059	3L_21256059_SNP [dm3] 3L_21262959_SNP [dm6]	A	T	3.159e^-4	0.913	INTRON Eip78C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4683270	X_4683270_SNP [dm3] X_4789237_SNP [dm6]	A	G	3.176e^-4	0.913	INTERGENIC
2R	9664820	2R_9664820_SNP [dm3] 2R_13777315_SNP [dm6]	A	G	3.178e^-4	0.913	DOWNSTREAM S-Lap7 INTRON Cpr50Ca
3L	6255886	3L_6255886_SNP [dm3] 3L_6262786_SNP [dm6]	T	C	3.182e^-4	0.913	UPSTREAM ImpL3 DOWNSTREAM CR44522 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	6255899	3L_6255899_SNP [dm3] 3L_6262799_SNP [dm6]	T	C	3.182e^-4	0.913	UPSTREAM ImpL3 DOWNSTREAM CR44522 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	22499989	3L_22499989_SNP [dm3] 3L_22506889_SNP [dm6]	A	G	3.190e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11244648	2L_11244648_SNP [dm3] 2L_11244648_SNP [dm6]	T	A	3.197e^-4	0.913	INTRON ab	TF binding site BDTNP1_TFBS_twi
3L	16716543	3L_16716543_SNP [dm3] 3L_16723443_SNP [dm6]	A	C	3.230e^-4	0.913	SYNONYMOUS_CODING Dab UTR_3_PRIME Dab	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13769684	2R_13769684_SNP [dm3] 2R_17882179_SNP [dm6]	A	G	3.242e^-4	0.913	UTR_5_PRIME CG30110 INTRON Elk
2L	4010471	2L_4010471_SNP [dm3] 2L_4010471_SNP [dm6]	C	T	3.243e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	6890053	X_6890053_SNP [dm3] X_6996020_SNP [dm6]	C	T	3.243e^-4	0.913	INTRON Inx7 EXON CR43837	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10113014	3L_10113014_SNP [dm3] 3L_10119914_SNP [dm6]	C	A	3.243e^-4	0.913	INTRON dpr6
3L	1843093	3L_1843093_SNP [dm3] 3L_1843093_SNP [dm6]	T	C	3.260e^-4	0.913	INTERGENIC
3L	22906215	3L_22906215_SNP [dm3] 3L_22913115_SNP [dm6]	T	A	3.265e^-4	0.913	INTRON CG12768	TF binding site mE1_TFBS_cad
2L	10630087	2L_10630087_SNP [dm3] 2L_10630087_SNP [dm6]	A	G	3.275e^-4	0.913	INTRON CG7329	TF binding site mE1_TFBS_sens
3R	27256082	3R_27256082_SNP [dm3] 3R_31430360_SNP [dm6]	G	C	3.278e^-4	0.913	INTRON Gprk2	TF binding site mE1_TFBS_chinmo
3L	2875795	3L_2875795_SNP [dm3] 3L_2875795_SNP [dm6]	A	T	3.290e^-4	0.913	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	2953574	3L_2953574_DEL [dm3] 3L_2953574_DEL [dm6]	TT	T	3.306e^-4	0.913	DOWNSTREAM Shab INTRON Shab
3L	11114364	3L_11114364_SNP [dm3] 3L_11121264_SNP [dm6]	A	G	3.311e^-4	0.913	SYNONYMOUS_CODING mRpL2 UPSTREAM fd68A DOWNSTREAM Ufd1-like	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7638052	3L_7638052_SNP [dm3] 3L_7644952_SNP [dm6]	C	T	3.317e^-4	0.913	INTERGENIC
2L	12437764	2L_12437764_SNP [dm3] 2L_12437764_SNP [dm6]	A	G	3.318e^-4	0.913	INTRON Elf	TF binding site mE1_TFBS_cad
2L	12437765	2L_12437765_INS [dm3] 2L_12437765_INS [dm6]	A	AC	3.318e^-4	0.913	INTRON Elf	TF binding site mE1_TFBS_cad
3L	15748782	3L_15748782_SNP [dm3] 3L_15755682_SNP [dm6]	T	G	3.321e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	18402904	2R_18402904_SNP [dm3] 2R_22515399_SNP [dm6]	C	T	3.323e^-4	0.913	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18402909	2R_18402909_SNP [dm3] 2R_22515404_SNP [dm6]	T	A	3.323e^-4	0.913	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	18229377	3L_18229377_SNP [dm3] 3L_18236277_SNP [dm6]	T	C	3.324e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5102793	2L_5102793_SNP [dm3] 2L_5102793_SNP [dm6]	C	T	3.324e^-4	0.913	UTR_5_PRIME Msp300	TF binding site mE1_TFBS_cad
2L	11032116	2L_11032116_SNP [dm3] 2L_11032116_SNP [dm6]	G	C	3.325e^-4	0.913	INTRON Samuel
2L	12430761	2L_12430761_SNP [dm3] 2L_12430761_SNP [dm6]	G	A	3.341e^-4	0.913	SYNONYMOUS_CODING CG5435 DOWNSTREAM CG6388 & 1 other	TF binding site mE1_TFBS_cad
X	11558337	X_11558337_SNP [dm3] X_11664304_SNP [dm6]	T	G	3.348e^-4	0.913	INTRON Ptp10D
2R	15294571	2R_15294571_SNP [dm3] 2R_19407066_SNP [dm6]	T	G	3.352e^-4	0.913	UTR_3_PRIME hts INTRON hts
2R	20203351	2R_20203351_SNP [dm3] 2R_24315828_SNP [dm6]	T	G	3.352e^-4	0.913	INTERGENIC
3L	10396489	3L_10396489_INS [dm3] 3L_10403389_INS [dm6]	T	TTA	3.380e^-4	0.913	INTERGENIC
2R	5687931	2R_5687931_SNP [dm3] 2R_9800426_SNP [dm6]	C	G	3.387e^-4	0.913	INTRON CG1688
2L	14434438	2L_14434438_SNP [dm3] 2L_14434438_SNP [dm6]	C	T	3.387e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	26865548	3R_26865548_SNP [dm3] 3R_31039826_SNP [dm6]	G	T	3.387e^-4	0.913	UTR_5_PRIME CanA1 INTRON CanA1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	21441062	3R_21441062_SNP [dm3] 3R_25615340_SNP [dm6]	G	C	3.397e^-4	0.913	INTRON Npl4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14762881	X_14762881_SNP [dm3] X_14868848_SNP [dm6]	T	C	3.410e^-4	0.913	INTRON Flo2 & 1 other
3L	16745263	3L_16745263_SNP [dm3] 3L_16752163_SNP [dm6]	G	A	3.413e^-4	0.913	INTERGENIC
3L	16064100	3L_16064100_SNP [dm3] 3L_16071000_SNP [dm6]	T	A	3.414e^-4	0.913	INTRON Mbs
3L	11115555	3L_11115555_SNP [dm3] 3L_11122455_SNP [dm6]	G	T	3.415e^-4	0.913	SYNONYMOUS_CODING Ufd1-like UPSTREAM CG42575 DOWNSTREAM mRpL2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	21324966	X_21324966_SNP [dm3] X_21453939_SNP [dm6]	C	G	3.421e^-4	0.913	INTRON CG42343
3L	1883482	3L_1883482_SNP [dm3] 3L_1883482_SNP [dm6]	C	G	3.422e^-4	0.913	UPSTREAM CG13937 DOWNSTREAM Aprt INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3R	25373940	3R_25373940_SNP [dm3] 3R_29548218_SNP [dm6]	G	T	3.440e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	13049448	3L_13049448_SNP [dm3] 3L_13056348_SNP [dm6]	G	A	3.471e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16570604	3R_16570604_SNP [dm3] 3R_20744882_SNP [dm6]	G	A	3.473e^-4	0.913	SYNONYMOUS_CODING CG31200 INTRON CG42322	TF binding site mE1_TFBS_cad
3L	21330738	3L_21330738_SNP [dm3] 3L_21337638_SNP [dm6]	C	T	3.482e^-4	0.913	SYNONYMOUS_CODING CG7338 DOWNSTREAM CG7324	TF binding site mE1_TFBS_cad
2L	12437623	2L_12437623_DEL [dm3] 2L_12437623_DEL [dm6]	CCC	C	3.483e^-4	0.913	INTRON Elf
2L	12437680	2L_12437680_SNP [dm3] 2L_12437680_SNP [dm6]	C	A	3.483e^-4	0.913	INTRON Elf
2L	12437823	2L_12437823_SNP [dm3] 2L_12437823_SNP [dm6]	T	C	3.483e^-4	0.913	SYNONYMOUS_CODING Elf	TF binding site mE1_TFBS_cad
3L	6020466	3L_6020466_SNP [dm3] 3L_6027366_SNP [dm6]	C	T	3.489e^-4	0.913	INTERGENIC
3R	25156119	3R_25156119_SNP [dm3] 3R_29330397_SNP [dm6]	G	A	3.493e^-4	0.913	INTERGENIC
3R	10567761	3R_10567761_SNP [dm3] 3R_14742039_SNP [dm6]	T	C	3.495e^-4	0.913	UTR_5_PRIME jvl UPSTREAM eff	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
2R	14189800	2R_14189800_SNP [dm3] 2R_18302295_SNP [dm6]	C	A	3.498e^-4	0.913	DOWNSTREAM CG14505 INTRON sbb	TF binding site BDTNP1_TFBS_dl
2R	14189801	2R_14189801_SNP [dm3] 2R_18302296_SNP [dm6]	C	A	3.498e^-4	0.913	DOWNSTREAM CG14505 INTRON sbb	TF binding site BDTNP1_TFBS_dl
3L	16064114	3L_16064114_DEL [dm3] 3L_16071014_DEL [dm6]	AAC	G	3.500e^-4	0.913	INTRON Mbs
3R	23217792	3R_23217792_SNP [dm3] 3R_27392070_SNP [dm6]	G	A	3.504e^-4	0.913	INTRON side
2L	4048579	2L_4048579_SNP [dm3] 2L_4048579_SNP [dm6]	C	T	3.519e^-4	0.913	INTRON ed
3L	11391448	3L_11391448_SNP [dm3] 3L_11398348_SNP [dm6]	T	C	3.543e^-4	0.913	DOWNSTREAM CG44362 INTERGENIC
3R	962708	3R_962708_SNP [dm3] 3R_5136986_SNP [dm6]	T	C	3.543e^-4	0.913	DOWNSTREAM CG12589 INTERGENIC
3L	16949453	3L_16949453_INS [dm3] 3L_16956353_INS [dm6]	T	TT	3.558e^-4	0.913	INTRON Nc73EF	TF binding site BDTNP1_TFBS_dl
2L	9546112	2L_9546112_SNP [dm3] 2L_9546112_SNP [dm6]	A	G	3.563e^-4	0.913	SYNONYMOUS_CODING CG13114	TF binding site mE1_TFBS_chinmo
3L	10227627	3L_10227627_DEL [dm3] 3L_10234527_DEL [dm6]	GG	G	3.569e^-4	0.913	INTERGENIC
2L	6727168	2L_6727168_SNP [dm3] 2L_6727168_SNP [dm6]	T	C	3.577e^-4	0.913	INTRON Liprin-alpha
3L	7634318	3L_7634318_SNP [dm3] 3L_7641218_SNP [dm6]	A	C	3.590e^-4	0.913	SYNONYMOUS_CODING CG7506 UPSTREAM CG33276	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3L	11108673	3L_11108673_SNP [dm3] 3L_11115573_SNP [dm6]	A	G	3.594e^-4	0.913	SYNONYMOUS_CODING fd68A
2R	18942398	2R_18942398_SNP [dm3] 2R_23054875_SNP [dm6]	G	A	3.598e^-4	0.913	UPSTREAM CG44252 INTERGENIC
3L	9312479	3L_9312479_SNP [dm3] 3L_9319379_SNP [dm6]	T	G	3.598e^-4	0.913	INTERGENIC
X	3485331	X_3485331_SNP [dm3] X_3591298_SNP [dm6]	C	T	3.602e^-4	0.913	INTRON AstA-R1
3L	17844780	3L_17844780_SNP [dm3] 3L_17851680_SNP [dm6]	A	T	3.613e^-4	0.913	SYNONYMOUS_CODING CG7441 DOWNSTREAM CG5535
2L	12959882	2L_12959882_SNP [dm3] 2L_12959882_SNP [dm6]	C	A	3.621e^-4	0.913	INTERGENIC
3L	16387344	3L_16387344_SNP [dm3] 3L_16394244_SNP [dm6]	G	C	3.646e^-4	0.913	UPSTREAM Grp INTRON CG44836	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9947457	3R_9947457_SNP [dm3] 3R_14121735_SNP [dm6]	G	A	3.648e^-4	0.913	UPSTREAM twf INTRON Abi	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5247571	2L_5247571_SNP [dm3] 2L_5247571_SNP [dm6]	C	G	3.654e^-4	0.913	INTRON tkv
3L	3510493	3L_3510493_SNP [dm3] 3L_3510493_SNP [dm6]	T	G	3.659e^-4	0.913	UTR_3_PRIME CG42324 DOWNSTREAM ImpE2
2L	6680440	2L_6680440_SNP [dm3] 2L_6680440_SNP [dm6]	T	G	3.668e^-4	0.913	NON_SYNONYMOUS_CODING Nhe3
2L	4162676	2L_4162676_SNP [dm3] 2L_4162676_SNP [dm6]	T	G	3.672e^-4	0.913	INTERGENIC
3L	2881155	3L_2881155_SNP [dm3] 3L_2881155_SNP [dm6]	C	T	3.673e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	9682343	3R_9682343_SNP [dm3] 3R_13856621_SNP [dm6]	T	A	3.682e^-4	0.913	INTERGENIC
3L	1590715	3L_1590715_SNP [dm3] 3L_1590715_SNP [dm6]	G	A	3.684e^-4	0.913	INTRON CG13917
3L	18803493	3L_18803493_INS [dm3] 3L_18810393_INS [dm6]	T	TCT	3.686e^-4	0.913	INTRON CG14073	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
X	5971153	X_5971153_SNP [dm3] X_6077120_SNP [dm6]	A	T	3.694e^-4	0.913	INTRON CG4666
3R	13869643	3R_13869643_SNP [dm3] 3R_18043921_SNP [dm6]	A	C	3.697e^-4	0.913	INTERGENIC
3L	3463947	3L_3463947_SNP [dm3] 3L_3463947_SNP [dm6]	G	A	3.703e^-4	0.913	SYNONYMOUS_CODING armi
X	2713524	X_2713524_SNP [dm3] X_2819491_SNP [dm6]	A	T	3.723e^-4	0.913	INTRON kirre
X	11838314	X_11838314_INS [dm3] X_11944281_INS [dm6]	G	GTTG	3.725e^-4	0.913	INTRON cac
X	22182332	X_22182332_SNP [dm3] X_22780496_SNP [dm6]	T	G	3.737e^-4	0.913	INTRON CR44997	transposable element FlyBase
2L	6173898	2L_6173898_SNP [dm3] 2L_6173898_SNP [dm6]	C	T	3.739e^-4	0.913	INTERGENIC
2R	20101503	2R_20101503_SNP [dm3] 2R_24213980_SNP [dm6]	A	G	3.747e^-4	0.913	UTR_3_PRIME CG30419
2R	20265497	2R_20265497_SNP [dm3] 2R_24377974_SNP [dm6]	G	A	3.751e^-4	0.913	UTR_5_PRIME CG13578 DOWNSTREAM mAChR-A	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7521361	3L_7521361_SNP [dm3] 3L_7528261_SNP [dm6]	C	G	3.759e^-4	0.913	UPSTREAM lqf DOWNSTREAM ltl INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	17948034	3L_17948034_SNP [dm3] 3L_17954934_SNP [dm6]	T	C	3.760e^-4	0.913	SYNONYMOUS_CODING Eip75B	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21794477	3R_21794477_SNP [dm3] 3R_25968755_SNP [dm6]	C	T	3.760e^-4	0.913	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	12940648	3L_12940648_SNP [dm3] 3L_12947548_SNP [dm6]	T	G	3.763e^-4	0.913	INTERGENIC	TF binding site mE1_TFBS_inv
2L	9959157	2L_9959157_SNP [dm3] 2L_9959157_SNP [dm6]	T	C	3.766e^-4	0.913	NON_SYNONYMOUS_CODING CG4658 DOWNSTREAM CG5850 & 1 other INTRON CG4658
2R	14366894	2R_14366894_DEL [dm3] 2R_18479389_DEL [dm6]	AA	T	3.770e^-4	0.913	INTRON CG30116
2R	8550805	2R_8550805_SNP [dm3] 2R_12663300_SNP [dm6]	G	T	3.770e^-4	0.913	UPSTREAM nemy INTRON nemy	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8551178	2R_8551178_SNP [dm3] 2R_12663673_SNP [dm6]	G	A	3.770e^-4	0.913	INTRON nemy	TF binding site mE1_TFBS_cad
2R	8551492	2R_8551492_SNP [dm3] 2R_12663987_SNP [dm6]	C	A	3.770e^-4	0.913	INTRON nemy
2R	8551702	2R_8551702_SNP [dm3] 2R_12664197_SNP [dm6]	A	G	3.770e^-4	0.913	INTRON nemy
2R	6753412	2R_6753412_DEL [dm3] 2R_10865907_DEL [dm6]	CAATCTTTTCCCCCTT...	C	3.773e^-4	0.913	INTRON CG30015
X	20792034	X_20792034_SNP [dm3] X_20921007_SNP [dm6]	C	T	3.776e^-4	0.913	INTRON shakB
3L	11117557	3L_11117557_SNP [dm3] 3L_11124457_SNP [dm6]	G	C	3.779e^-4	0.913	INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	12131257	3L_12131257_SNP [dm3] 3L_12138157_SNP [dm6]	G	A	3.786e^-4	0.913	SYNONYMOUS_CODING l_3_neo18 UPSTREAM RhoGAP68F DOWNSTREAM Atg12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
2L	7006897	2L_7006897_SNP [dm3] 2L_7006897_SNP [dm6]	C	T	3.787e^-4	0.913	INTRON uif	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	9399781	3R_9399781_SNP [dm3] 3R_13574059_SNP [dm6]	C	T	3.801e^-4	0.913	UPSTREAM CR43848 INTERGENIC
3L	7521386	3L_7521386_SNP [dm3] 3L_7528286_SNP [dm6]	A	G	3.812e^-4	0.913	UPSTREAM lqf DOWNSTREAM ltl INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	8126897	2R_8126897_SNP [dm3] 2R_12239392_SNP [dm6]	A	G	3.814e^-4	0.913	INTERGENIC
2R	2481399	2R_2481399_SNP [dm3] 2R_6593894_SNP [dm6]	G	A	3.819e^-4	0.913	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	18118810	3R_18118810_SNP [dm3] 3R_22293088_SNP [dm6]	A	T	3.819e^-4	0.913	DOWNSTREAM mir-1010 INTRON SKIP
X	6904812	X_6904812_SNP [dm3] X_7010779_SNP [dm6]	A	G	3.825e^-4	0.913	SYNONYMOUS_CODING cm UPSTREAM Inx7 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	15736384	2L_15736384_SNP [dm3] 2L_15736384_SNP [dm6]	T	A	3.830e^-4	0.913	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8769220	2L_8769220_SNP [dm3] 2L_8769220_SNP [dm6]	T	A	3.838e^-4	0.913	SYNONYMOUS_CODING CG9465 UPSTREAM CG9463
2R	6798085	2R_6798085_SNP [dm3] 2R_10910580_SNP [dm6]	A	C	3.844e^-4	0.913	DOWNSTREAM Obp47a INTERGENIC
X	14326439	X_14326439_SNP [dm3] X_14432406_SNP [dm6]	T	A	3.847e^-4	0.913	INTRON dpr8
2R	10382559	2R_10382559_SNP [dm3] 2R_14495054_SNP [dm6]	A	G	3.848e^-4	0.913	INTRON L	TF binding site mE1_TFBS_cad
2R	10382575	2R_10382575_SNP [dm3] 2R_14495070_SNP [dm6]	C	G	3.848e^-4	0.913	INTRON L	TF binding site mE1_TFBS_cad
2R	10382598	2R_10382598_SNP [dm3] 2R_14495093_SNP [dm6]	T	A	3.848e^-4	0.913	INTRON L	TF binding site mE1_TFBS_cad
2R	10382605	2R_10382605_SNP [dm3] 2R_14495100_SNP [dm6]	T	G	3.848e^-4	0.913	INTRON L	TF binding site mE1_TFBS_cad
2R	10382606	2R_10382606_SNP [dm3] 2R_14495101_SNP [dm6]	A	G	3.848e^-4	0.913	INTRON L	TF binding site mE1_TFBS_cad
2L	12491401	2L_12491401_SNP [dm3] 2L_12491401_SNP [dm6]	G	A	3.850e^-4	0.913	INTRON bun
3L	17882423	3L_17882423_SNP [dm3] 3L_17889323_SNP [dm6]	C	T	3.850e^-4	0.913	SPLICE_SITE_REGION CG7402 INTRON CG7402
3L	17840934	3L_17840934_SNP [dm3] 3L_17847834_SNP [dm6]	C	T	3.850e^-4	0.913	SYNONYMOUS_CODING CG7430	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14755195	2R_14755195_SNP [dm3] 2R_18867690_SNP [dm6]	G	T	3.853e^-4	0.913	SYNONYMOUS_CODING DptB DOWNSTREAM CG43109
2L	14434177	2L_14434177_SNP [dm3] 2L_14434177_SNP [dm6]	C	T	3.858e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	10474692	2L_10474692_SNP [dm3] 2L_10474692_SNP [dm6]	T	A	3.865e^-4	0.913	UPSTREAM RluA-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	7521480	3L_7521480_SNP [dm3] 3L_7528380_SNP [dm6]	A	G	3.867e^-4	0.913	UPSTREAM lqf DOWNSTREAM ltl INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	3662935	X_3662935_SNP [dm3] X_3768902_SNP [dm6]	G	A	3.867e^-4	0.913	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	6905437	X_6905437_SNP [dm3] X_7011404_SNP [dm6]	G	T	3.868e^-4	0.913	START_GAINED CG32736 & 1 other UTR_5_PRIME CG32736 & 1 other UPSTREAM CG32736 & 2 others DOWNSTREAM CG3032	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2R	10330559	2R_10330559_SNP [dm3] 2R_14443054_SNP [dm6]	A	G	3.876e^-4	0.913	INTRON Oaz	TF binding site mE1_TFBS_cad
2R	11898487	2R_11898487_SNP [dm3] 2R_16010982_SNP [dm6]	A	T	3.880e^-4	0.913	SYNONYMOUS_CODING CG8388 UPSTREAM CG8389 INTRON CG8389	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	2854966	X_2854966_SNP [dm3] X_2960933_SNP [dm6]	A	C	3.885e^-4	0.913	INTRON kirre & 1 other
3L	19349310	3L_19349310_INS [dm3] 3L_19356210_INS [dm6]	A	AA	3.887e^-4	0.913	INTRON CG32206
X	5256503	X_5256503_SNP [dm3] X_5362470_SNP [dm6]	A	G	3.894e^-4	0.913	INTRON SK
3L	3639478	3L_3639478_SNP [dm3] 3L_3639478_SNP [dm6]	T	G	3.895e^-4	0.913	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10190997	2R_10190997_SNP [dm3] 2R_14303492_SNP [dm6]	T	C	3.920e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11899330	3L_11899330_INS [dm3] 3L_11906230_INS [dm6]	C	CCGCCAACCATTCA...	3.921e^-4	0.913	INTRON CG44837
X	6497869	X_6497869_SNP [dm3] X_6603836_SNP [dm6]	G	C	3.922e^-4	0.913	INTRON pigs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2878384	2R_2878384_SNP [dm3] 2R_6990879_SNP [dm6]	A	G	3.923e^-4	0.913	INTERGENIC
3L	6814824	3L_6814824_SNP [dm3] 3L_6821724_SNP [dm6]	A	T	3.924e^-4	0.913	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	2437872	3L_2437872_SNP [dm3] 3L_2437872_SNP [dm6]	C	T	3.929e^-4	0.913	INTRON CG45186	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	3106250	3L_3106250_SNP [dm3] 3L_3106250_SNP [dm6]	C	A	3.933e^-4	0.913	INTRON Cht7
X	15614937	X_15614937_SNP [dm3] X_15720904_SNP [dm6]	G	A	3.934e^-4	0.913	SYNONYMOUS_CODING CG8184	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	17694706	3L_17694706_INS [dm3] 3L_17701606_INS [dm6]	AC	TTGTGTCTT	3.934e^-4	0.913	INTRON Ccn
3R	17763210	3R_17763210_INS [dm3] 3R_21937488_INS [dm6]	T	TC	3.966e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3030457	X_3030457_SNP [dm3] X_3136424_SNP [dm6]	T	C	3.970e^-4	0.913	INTRON N	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	19556524	2R_19556524_SNP [dm3] 2R_23669001_SNP [dm6]	T	A	3.974e^-4	0.913	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15228422	3L_15228422_DEL [dm3] 3L_15235322_DEL [dm6]	TTT	T	3.977e^-4	0.913	UPSTREAM Tollo INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
3L	22848499	3L_22848499_SNP [dm3] 3L_22855399_SNP [dm6]	T	G	3.978e^-4	0.913	NON_SYNONYMOUS_CODING CG32459 DOWNSTREAM CR43426
2R	18422819	2R_18422819_SNP [dm3] 2R_22535314_SNP [dm6]	G	C	3.978e^-4	0.913	INTRON px
2R	5689243	2R_5689243_SNP [dm3] 2R_9801738_SNP [dm6]	T	A	3.985e^-4	0.913	INTRON CG1688
3L	16545658	3L_16545658_SNP [dm3] 3L_16552558_SNP [dm6]	T	C	3.986e^-4	0.913	INTERGENIC
2L	1746707	2L_1746707_SNP [dm3] 2L_1746707_SNP [dm6]	T	C	3.989e^-4	0.913	INTRON CG17646
2R	9660239	2R_9660239_SNP [dm3] 2R_13772734_SNP [dm6]	G	C	3.991e^-4	0.913	INTRON Cpr50Ca
X	6905072	X_6905072_SNP [dm3] X_7011039_SNP [dm6]	C	T	4.014e^-4	0.913	UPSTREAM CG32736 & 1 other INTRON cm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	6680168	3R_6680168_SNP [dm3] 3R_10854446_SNP [dm6]	G	A	4.019e^-4	0.913	UTR_5_PRIME CG6567 UPSTREAM CG4511 DOWNSTREAM CG4565	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3R	6680226	3R_6680226_SNP [dm3] 3R_10854504_SNP [dm6]	T	C	4.019e^-4	0.913	UTR_5_PRIME CG4511 UPSTREAM CG4511 & 1 other DOWNSTREAM CG4565	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	6680227	3R_6680227_SNP [dm3] 3R_10854505_SNP [dm6]	A	C	4.019e^-4	0.913	UTR_5_PRIME CG4511 UPSTREAM CG4511 & 1 other DOWNSTREAM CG4565	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	18831424	3L_18831424_SNP [dm3] 3L_18838324_SNP [dm6]	A	T	4.028e^-4	0.913	INTRON Indy	TF binding site mE1_TFBS_zfh1
X	6735440	X_6735440_SNP [dm3] X_6841407_SNP [dm6]	T	C	4.036e^-4	0.913	INTRON CG14435
3R	12346343	3R_12346343_SNP [dm3] 3R_16520621_SNP [dm6]	T	A	4.036e^-4	0.913	INTRON CG42342	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	7953618	3R_7953618_SNP [dm3] 3R_12127896_SNP [dm6]	A	G	4.041e^-4	0.913	UTR_5_PRIME CG4702	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1564687	3L_1564687_SNP [dm3] 3L_1564687_SNP [dm6]	T	A	4.060e^-4	0.913	UPSTREAM CG12003 INTRON CG7879
2L	12437754	2L_12437754_SNP [dm3] 2L_12437754_SNP [dm6]	A	T	4.062e^-4	0.913	INTRON Elf	TF binding site mE1_TFBS_cad
2R	17760406	2R_17760406_SNP [dm3] 2R_21872901_SNP [dm6]	G	T	4.075e^-4	0.913	INTRON Fili	TF binding site mE1_TFBS_D mE1_TFBS_sens
3L	11141917	3L_11141917_SNP [dm3] 3L_11148817_SNP [dm6]	T	A	4.075e^-4	0.913	DOWNSTREAM CG6216 INTRON CG32082
3R	20309921	3R_20309921_SNP [dm3] 3R_24484199_SNP [dm6]	G	A	4.082e^-4	0.913	INTERGENIC
3L	13767495	3L_13767495_SNP [dm3] 3L_13774395_SNP [dm6]	T	C	4.082e^-4	0.913	INTRON bru-3	TF binding site mE1_TFBS_HSA
2L	5765654	2L_5765654_SNP [dm3] 2L_5765654_SNP [dm6]	T	A	4.085e^-4	0.913	INTRON obst-E
2L	5765687	2L_5765687_SNP [dm3] 2L_5765687_SNP [dm6]	G	C	4.085e^-4	0.913	INTRON obst-E
3L	8960630	3L_8960630_SNP [dm3] 3L_8967530_SNP [dm6]	A	T	4.088e^-4	0.913	UPSTREAM CG5026 INTRON CG5021	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6905227	X_6905227_SNP [dm3] X_7011194_SNP [dm6]	C	T	4.095e^-4	0.913	UPSTREAM CG32736 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	11330511	3L_11330511_SNP [dm3] 3L_11337411_SNP [dm6]	A	T	4.102e^-4	0.913	INTERGENIC	TF binding site mE1_TFBS_sens
3L	13334595	3L_13334595_SNP [dm3] 3L_13341495_SNP [dm6]	G	A	4.110e^-4	0.913	INTERGENIC
2R	19668146	2R_19668146_SNP [dm3] 2R_23780623_SNP [dm6]	C	G	4.113e^-4	0.913	INTRON CG9850
2R	19668156	2R_19668156_SNP [dm3] 2R_23780633_SNP [dm6]	C	G	4.113e^-4	0.913	INTRON CG9850
2R	9887737	2R_9887737_SNP [dm3] 2R_14000232_SNP [dm6]	G	A	4.117e^-4	0.913	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	16336765	3R_16336765_SNP [dm3] 3R_20511043_SNP [dm6]	C	T	4.131e^-4	0.913	UPSTREAM CG4288 INTRON CG4288
3R	14309545	3R_14309545_SNP [dm3] 3R_18483823_SNP [dm6]	C	T	4.145e^-4	0.913	INTRON fru
3R	14309560	3R_14309560_SNP [dm3] 3R_18483838_SNP [dm6]	G	T	4.145e^-4	0.913	INTRON fru
X	3658490	X_3658490_INS [dm3] X_3764457_INS [dm6]	T	TGACAGAG	4.147e^-4	0.913	INTRON tlk	TF binding site BDTNP1_TFBS_dl
X	3658493	X_3658493_DEL [dm3] X_3764460_DEL [dm6]	CCCTCTG	C	4.147e^-4	0.913	INTRON tlk	TF binding site BDTNP1_TFBS_dl
X	3658776	X_3658776_SNP [dm3] X_3764743_SNP [dm6]	G	T	4.147e^-4	0.913	INTRON tlk
X	3658783	X_3658783_SNP [dm3] X_3764750_SNP [dm6]	G	A	4.147e^-4	0.913	INTRON tlk
3R	20310036	3R_20310036_SNP [dm3] 3R_24484314_SNP [dm6]	G	A	4.150e^-4	0.913	INTERGENIC
3L	17941299	3L_17941299_SNP [dm3] 3L_17948199_SNP [dm6]	A	T	4.151e^-4	0.913	UPSTREAM CR45393 INTERGENIC
3R	13133143	3R_13133143_SNP [dm3] 3R_17307421_SNP [dm6]	T	G	4.155e^-4	0.913	INTERGENIC
3L	7714609	3L_7714609_SNP [dm3] 3L_7721509_SNP [dm6]	G	C	4.157e^-4	0.913	DOWNSTREAM CG7457 & 1 other INTRON CG32373	TF binding site mE1_TFBS_inv
3R	10604014	3R_10604014_SNP [dm3] 3R_14778292_SNP [dm6]	A	T	4.167e^-4	0.913	INTRON jvl
2L	22361231	2L_22361231_SNP [dm3] 2L_22361231_SNP [dm6]	C	T	4.171e^-4	0.913	INTRON CG17018	transposable element FlyBase
X	9908257	X_9908257_SNP [dm3] X_10014224_SNP [dm6]	C	G	4.176e^-4	0.913	UTR_3_PRIME CG2990
X	9908260	X_9908260_SNP [dm3] X_10014227_SNP [dm6]	A	T	4.176e^-4	0.913	UTR_3_PRIME CG2990
X	9908266	X_9908266_SNP [dm3] X_10014233_SNP [dm6]	C	T	4.176e^-4	0.913	UTR_3_PRIME CG2990
2L	10629538	2L_10629538_SNP [dm3] 2L_10629538_SNP [dm6]	C	G	4.184e^-4	0.913	NON_SYNONYMOUS_CODING CG7329
3L	4884344	3L_4884344_SNP [dm3] 3L_4884344_SNP [dm6]	T	C	4.191e^-4	0.913	INTRON CG17150
3R	5114847	3R_5114847_SNP [dm3] 3R_9289125_SNP [dm6]	T	A	4.200e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_sna
3L	4884255	3L_4884255_SNP [dm3] 3L_4884255_SNP [dm6]	C	A	4.201e^-4	0.913	INTRON CG17150
3L	17850349	3L_17850349_SNP [dm3] 3L_17857249_SNP [dm6]	T	C	4.201e^-4	0.913	UPSTREAM CG5535 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	25798562	3R_25798562_SNP [dm3] 3R_29972840_SNP [dm6]	A	T	4.212e^-4	0.913	INTERGENIC
X	14322941	X_14322941_SNP [dm3] X_14428908_SNP [dm6]	C	T	4.213e^-4	0.913	INTRON dpr8
2L	5415585	2L_5415585_SNP [dm3] 2L_5415585_SNP [dm6]	C	T	4.222e^-4	0.913	SYNONYMOUS_CODING H15	TF binding site mE1_TFBS_cad
X	4059704	X_4059704_SNP [dm3] X_4165671_SNP [dm6]	T	C	4.227e^-4	0.913	INTRON Fas2
2R	8551016	2R_8551016_SNP [dm3] 2R_12663511_SNP [dm6]	T	G	4.232e^-4	0.913	UPSTREAM nemy INTRON nemy	TF binding site mE1_TFBS_cad
3L	3001122	3L_3001122_SNP [dm3] 3L_3001122_SNP [dm6]	A	C	4.235e^-4	0.913	UPSTREAM FMRFaR INTERGENIC
3R	9947173	3R_9947173_SNP [dm3] 3R_14121451_SNP [dm6]	C	T	4.237e^-4	0.913	SYNONYMOUS_CODING Abi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14595353	2R_14595353_SNP [dm3] 2R_18707848_SNP [dm6]	G	A	4.249e^-4	0.913	SYNONYMOUS_CODING CG15073 DOWNSTREAM CG15087
2L	11501599	2L_11501599_SNP [dm3] 2L_11501599_SNP [dm6]	A	C	4.254e^-4	0.913	UPSTREAM spz4 INTERGENIC
2L	6716773	2L_6716773_SNP [dm3] 2L_6716773_SNP [dm6]	C	T	4.261e^-4	0.913	UPSTREAM AkhR & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cnc mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	6716826	2L_6716826_SNP [dm3] 2L_6716826_SNP [dm6]	G	A	4.261e^-4	0.913	UPSTREAM AkhR & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cnc mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	8446472	3L_8446472_SNP [dm3] 3L_8453372_SNP [dm6]	A	G	4.270e^-4	0.913	INTRON Gug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
X	4397412	X_4397412_SNP [dm3] X_4503379_SNP [dm6]	T	C	4.274e^-4	0.913	INTRON CR32773
2L	10007363	2L_10007363_SNP [dm3] 2L_10007363_SNP [dm6]	T	A	4.284e^-4	0.913	INTRON CG4747
3L	10396524	3L_10396524_SNP [dm3] 3L_10403424_SNP [dm6]	T	A	4.291e^-4	0.913	INTERGENIC
3L	11663862	3L_11663862_SNP [dm3] 3L_11670762_SNP [dm6]	A	G	4.296e^-4	0.913	INTRON CG32085
X	6476115	X_6476115_SNP [dm3] X_6582082_SNP [dm6]	C	T	4.297e^-4	0.913	SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12437721	2L_12437721_DEL [dm3] 2L_12437721_DEL [dm6]	AGCCATAT	A	4.299e^-4	0.913	INTRON Elf	TF binding site mE1_TFBS_cad
2L	12437759	2L_12437759_SNP [dm3] 2L_12437759_SNP [dm6]	C	G	4.299e^-4	0.913	INTRON Elf	TF binding site mE1_TFBS_cad
2L	12437761	2L_12437761_SNP [dm3] 2L_12437761_SNP [dm6]	T	C	4.299e^-4	0.913	INTRON Elf	TF binding site mE1_TFBS_cad
2L	12437763	2L_12437763_SNP [dm3] 2L_12437763_SNP [dm6]	T	G	4.299e^-4	0.913	INTRON Elf	TF binding site mE1_TFBS_cad
2L	12437768	2L_12437768_SNP [dm3] 2L_12437768_SNP [dm6]	G	T	4.299e^-4	0.913	INTRON Elf	TF binding site mE1_TFBS_cad
2L	6716572	2L_6716572_INS [dm3] 2L_6716572_INS [dm6]	C	GTCAGTGG	4.304e^-4	0.913	UPSTREAM AkhR INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	6716574	2L_6716574_SNP [dm3] 2L_6716574_SNP [dm6]	C	T	4.304e^-4	0.913	UPSTREAM AkhR INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	21150370	3L_21150370_SNP [dm3] 3L_21157270_SNP [dm6]	T	C	4.311e^-4	0.913	INTRON Ac78C
3R	4331156	3R_4331156_SNP [dm3] 3R_8505434_SNP [dm6]	A	G	4.313e^-4	0.913	INTERGENIC
3L	16996097	3L_16996097_SNP [dm3] 3L_17002997_SNP [dm6]	G	A	4.327e^-4	0.913	UPSTREAM CG3764 INTRON CG3764
3R	27461436	3R_27461436_INS [dm3] 3R_31635714_INS [dm6]	G	GGCG	4.329e^-4	0.913	INTRON kek6	TF binding site mE1_TFBS_chinmo
2R	20239065	2R_20239065_SNP [dm3] 2R_24351542_SNP [dm6]	A	G	4.335e^-4	0.913	UPSTREAM CG44812 INTRON bs EXON CR44811	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9958935	3R_9958935_SNP [dm3] 3R_14133213_SNP [dm6]	A	C	4.341e^-4	0.913	INTERGENIC
2L	4204566	2L_4204566_SNP [dm3] 2L_4204566_SNP [dm6]	C	T	4.345e^-4	0.913	NON_SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_sens
2L	6716280	2L_6716280_SNP [dm3] 2L_6716280_SNP [dm6]	T	C	4.355e^-4	0.913	UPSTREAM AkhR INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
3L	11721433	3L_11721433_SNP [dm3] 3L_11728333_SNP [dm6]	G	A	4.356e^-4	0.913	UPSTREAM CG32088 DOWNSTREAM Bmcp INTERGENIC
X	3663112	X_3663112_SNP [dm3] X_3769079_SNP [dm6]	G	A	4.357e^-4	0.913	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	6905469	X_6905469_SNP [dm3] X_7011436_SNP [dm6]	G	A	4.360e^-4	0.913	UPSTREAM CG32736 & 2 others DOWNSTREAM CG3032 INTRON CG32736 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	21331722	3L_21331722_SNP [dm3] 3L_21338622_SNP [dm6]	G	C	4.363e^-4	0.913	NON_SYNONYMOUS_CODING CG7324 DOWNSTREAM CG7338
3L	21328215	3L_21328215_SNP [dm3] 3L_21335115_SNP [dm6]	T	C	4.372e^-4	0.913	UPSTREAM CG7338 DOWNSTREAM Rab26 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn
3L	22494314	3L_22494314_SNP [dm3] 3L_22501214_SNP [dm6]	C	T	4.375e^-4	0.913	UPSTREAM CG43312 INTERGENIC
X	4397397	X_4397397_SNP [dm3] X_4503364_SNP [dm6]	G	C	4.380e^-4	0.913	INTRON CR32773
2R	15863480	2R_15863480_SNP [dm3] 2R_19975975_SNP [dm6]	A	T	4.385e^-4	0.913	INTERGENIC
3R	10216543	3R_10216543_SNP [dm3] 3R_14390821_SNP [dm6]	T	C	4.413e^-4	0.913	DOWNSTREAM cv-c INTERGENIC	TF binding site mE1_TFBS_zfh1
3L	17897507	3L_17897507_SNP [dm3] 3L_17904407_SNP [dm6]	T	C	4.420e^-4	0.913	INTRON Prestin
2L	13097885	2L_13097885_SNP [dm3] 2L_13097885_SNP [dm6]	T	G	4.422e^-4	0.913	DOWNSTREAM CR45447 INTERGENIC
2L	13097886	2L_13097886_SNP [dm3] 2L_13097886_SNP [dm6]	T	C	4.422e^-4	0.913	DOWNSTREAM CR45447 INTERGENIC
3L	11520520	3L_11520520_SNP [dm3] 3L_11527420_SNP [dm6]	G	T	4.434e^-4	0.913	INTRON Mob2	TF binding site mE1_TFBS_HSA
3L	19386849	3L_19386849_SNP [dm3] 3L_19393749_SNP [dm6]	T	C	4.437e^-4	0.913	INTRON CG32206
2L	8781605	2L_8781605_SNP [dm3] 2L_8781605_SNP [dm6]	A	G	4.438e^-4	0.913	UPSTREAM CG9468 DOWNSTREAM CG42710 INTERGENIC
3L	2917758	3L_2917758_SNP [dm3] 3L_2917758_SNP [dm6]	T	G	4.438e^-4	0.913	INTRON Shab
3L	7648160	3L_7648160_SNP [dm3] 3L_7655060_SNP [dm6]	C	T	4.442e^-4	0.913	UPSTREAM CG7492 DOWNSTREAM Ank2 INTRON CG32373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10220041	3R_10220041_SNP [dm3] 3R_14394319_SNP [dm6]	A	C	4.445e^-4	0.913	SYNONYMOUS_CODING cv-c	TF binding site mE1_TFBS_cad
3R	26061019	3R_26061019_SNP [dm3] 3R_30235297_SNP [dm6]	A	T	4.506e^-4	0.913	INTERGENIC
3L	21122249	3L_21122249_SNP [dm3] 3L_21129149_SNP [dm6]	T	A	4.518e^-4	0.913	INTRON ko
3L	21122367	3L_21122367_SNP [dm3] 3L_21129267_SNP [dm6]	A	G	4.518e^-4	0.913	INTRON ko
2R	18903339	2R_18903339_SNP [dm3] 2R_23015816_SNP [dm6]	C	T	4.526e^-4	0.913	INTRON twi & 1 other
3L	17875873	3L_17875873_SNP [dm3] 3L_17882773_SNP [dm6]	C	T	4.534e^-4	0.913	UTR_3_PRIME CG7408 DOWNSTREAM CG5506 & 1 other
2L	12437808	2L_12437808_SNP [dm3] 2L_12437808_SNP [dm6]	C	T	4.547e^-4	0.913	SPLICE_SITE_REGION Elf INTRON Elf	TF binding site mE1_TFBS_cad
X	12408488	X_12408488_SNP [dm3] X_12514455_SNP [dm6]	T	A	4.555e^-4	0.913	INTRON CG2556
X	2888414	X_2888414_SNP [dm3] X_2994381_SNP [dm6]	T	G	4.556e^-4	0.913	INTRON kirre	TF binding site mE1_TFBS_HSA
2L	1287688	2L_1287688_SNP [dm3] 2L_1287688_SNP [dm6]	T	C	4.558e^-4	0.913	SYNONYMOUS_CODING robo3
2L	172166	2L_172166_SNP [dm3] 2L_172166_SNP [dm6]	C	A	4.579e^-4	0.913	INTRON spen	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	23410655	3R_23410655_SNP [dm3] 3R_27584933_SNP [dm6]	G	A	4.583e^-4	0.913	NON_SYNONYMOUS_CODING raps	TF binding site mE1_TFBS_chinmo
3L	21807086	3L_21807086_SNP [dm3] 3L_21813986_SNP [dm6]	C	G	4.585e^-4	0.913	UPSTREAM CG43895 INTRON eg	transposable element FlyBase
2L	7392804	2L_7392804_SNP [dm3] 2L_7392804_SNP [dm6]	T	A	4.587e^-4	0.913	INTRON CG5160
2L	22241652	2L_22241652_SNP [dm3] 2L_22241652_SNP [dm6]	T	G	4.591e^-4	0.913	UTR_3_PRIME CG3262 DOWNSTREAM CG3262	transposable element FlyBase
2L	22241685	2L_22241685_SNP [dm3] 2L_22241685_SNP [dm6]	C	T	4.591e^-4	0.913	UTR_3_PRIME CG3262 DOWNSTREAM CG3262	transposable element FlyBase
2L	22241714	2L_22241714_SNP [dm3] 2L_22241714_SNP [dm6]	C	T	4.591e^-4	0.913	UTR_3_PRIME CG3262 DOWNSTREAM CG3262	transposable element FlyBase
2L	22241737	2L_22241737_SNP [dm3] 2L_22241737_SNP [dm6]	C	T	4.591e^-4	0.913	UTR_3_PRIME CG3262 DOWNSTREAM CG3262	transposable element FlyBase
2L	22241798	2L_22241798_SNP [dm3] 2L_22241798_SNP [dm6]	A	G	4.591e^-4	0.913	UTR_3_PRIME CG3262 DOWNSTREAM CG3262
3R	1295399	3R_1295399_SNP [dm3] 3R_5469677_SNP [dm6]	T	C	4.593e^-4	0.913	NON_SYNONYMOUS_CODING mRpL44 DOWNSTREAM CG12162	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	12161236	2L_12161236_SNP [dm3] 2L_12161236_SNP [dm6]	C	T	4.595e^-4	0.913	UPSTREAM CG31861 INTRON CG31760
2R	15188954	2R_15188954_SNP [dm3] 2R_19301449_SNP [dm6]	A	T	4.596e^-4	0.913	INTRON Tab2	TF binding site mE1_TFBS_inv
3L	2988863	3L_2988863_SNP [dm3] 3L_2988863_SNP [dm6]	G	A	4.614e^-4	0.913	INTERGENIC
3L	3639490	3L_3639490_SNP [dm3] 3L_3639490_SNP [dm6]	G	A	4.627e^-4	0.913	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2611629	X_2611629_SNP [dm3] X_2717596_SNP [dm6]	T	C	4.630e^-4	0.913	UTR_3_PRIME CG2694 DOWNSTREAM CG2701
2R	6343702	2R_6343702_DEL [dm3] 2R_10456197_DEL [dm6]	CC	C	4.645e^-4	0.913	INTRON Galphao & 1 other	TF binding site mE1_TFBS_inv
2R	14272145	2R_14272145_SNP [dm3] 2R_18384640_SNP [dm6]	C	A	4.666e^-4	0.913	SYNONYMOUS_CODING CG18107 DOWNSTREAM CG15067 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	1718935	2R_1718935_SNP [dm3] 2R_5831430_SNP [dm6]	T	C	4.668e^-4	0.913	INTRON dpr12
3L	8960619	3L_8960619_SNP [dm3] 3L_8967519_SNP [dm6]	G	A	4.672e^-4	0.913	SPLICE_SITE_REGION CG5021 INTRON CG5021	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11647262	2L_11647262_SNP [dm3] 2L_11647262_SNP [dm6]	G	T	4.677e^-4	0.913	SYNONYMOUS_CODING CG6614	TF binding site mE1_TFBS_HSA
2R	16566459	2R_16566459_SNP [dm3] 2R_20678954_SNP [dm6]	T	C	4.679e^-4	0.913	INTERGENIC
2L	12527578	2L_12527578_SNP [dm3] 2L_12527578_SNP [dm6]	C	A	4.685e^-4	0.913	INTRON bun	TF binding site BDTNP1_TFBS_dl
2R	9654643	2R_9654643_SNP [dm3] 2R_13767138_SNP [dm6]	G	T	4.715e^-4	0.913	INTERGENIC
2R	20344791	2R_20344791_SNP [dm3] 2R_24457268_SNP [dm6]	C	A	4.724e^-4	0.913	INTRON CG13579
X	2713518	X_2713518_SNP [dm3] X_2819485_SNP [dm6]	C	G	4.726e^-4	0.913	INTRON kirre
2L	3231803	2L_3231803_SNP [dm3] 2L_3231803_SNP [dm6]	C	G	4.731e^-4	0.913	INTERGENIC
3R	23209236	3R_23209236_SNP [dm3] 3R_27383514_SNP [dm6]	A	T	4.749e^-4	0.913	INTRON side
3L	13316527	3L_13316527_SNP [dm3] 3L_13323427_SNP [dm6]	A	G	4.756e^-4	0.913	DOWNSTREAM CR44558 INTERGENIC
3R	21331952	3R_21331952_SNP [dm3] 3R_25506230_SNP [dm6]	T	A	4.762e^-4	0.913	UPSTREAM CG5111 DOWNSTREAM CG5107 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	17564429	3L_17564429_SNP [dm3] 3L_17571329_SNP [dm6]	T	A	4.766e^-4	0.913	INTRON Eip74EF
X	3662962	X_3662962_SNP [dm3] X_3768929_SNP [dm6]	G	C	4.768e^-4	0.913	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13356558	2R_13356558_SNP [dm3] 2R_17469053_SNP [dm6]	G	A	4.771e^-4	0.913	SYNONYMOUS_CODING Tes UPSTREAM qkr54B
X	17222710	X_17222710_SNP [dm3] X_17328677_SNP [dm6]	C	A	4.790e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	11267312	3L_11267312_SNP [dm3] 3L_11274212_SNP [dm6]	C	G	4.813e^-4	0.913	EXON CR44720	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4877898	2L_4877898_SNP [dm3] 2L_4877898_SNP [dm6]	A	T	4.827e^-4	0.913	UTR_3_PRIME Cf2
3L	3794035	3L_3794035_SNP [dm3] 3L_3794035_SNP [dm6]	A	T	4.835e^-4	0.913	INTRON CG32264
3L	7642121	3L_7642121_SNP [dm3] 3L_7649021_SNP [dm6]	T	C	4.847e^-4	0.913	INTERGENIC
2L	7707686	2L_7707686_SNP [dm3] 2L_7707686_SNP [dm6]	C	A	4.859e^-4	0.913	SYNONYMOUS_CODING Tep3 DOWNSTREAM CR44990
2L	19582076	2L_19582076_SNP [dm3] 2L_19582076_SNP [dm6]	T	C	4.867e^-4	0.913	NON_SYNONYMOUS_CODING Hakai DOWNSTREAM CG10262	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9513213	2R_9513213_SNP [dm3] 2R_13625708_SNP [dm6]	C	T	4.868e^-4	0.913	INTRON fas
2L	12957364	2L_12957364_SNP [dm3] 2L_12957364_SNP [dm6]	C	T	4.875e^-4	0.913	INTERGENIC
2L	5102791	2L_5102791_SNP [dm3] 2L_5102791_SNP [dm6]	T	C	4.876e^-4	0.913	UTR_5_PRIME Msp300	TF binding site mE1_TFBS_cad
3L	6155416	3L_6155416_DEL [dm3] 3L_6162316_DEL [dm6]	ACATAGTTTAACTTTCAAA...	A	4.886e^-4	0.913	UPSTREAM CG13296 DOWNSTREAM Cpr65Az & 1 other INTERGENIC
2L	2964410	2L_2964410_SNP [dm3] 2L_2964410_SNP [dm6]	T	C	4.897e^-4	0.913	UTR_3_PRIME Rbp9	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	16982432	3L_16982432_SNP [dm3] 3L_16989332_SNP [dm6]	T	A	4.913e^-4	0.913	INTRON Exn
3L	16982523	3L_16982523_SNP [dm3] 3L_16989423_SNP [dm6]	T	A	4.913e^-4	0.913	INTRON Exn
3L	16982576	3L_16982576_SNP [dm3] 3L_16989476_SNP [dm6]	T	A	4.913e^-4	0.913	INTRON Exn
3L	16982578	3L_16982578_SNP [dm3] 3L_16989478_SNP [dm6]	A	T	4.913e^-4	0.913	INTRON Exn
3L	18195723	3L_18195723_SNP [dm3] 3L_18202623_SNP [dm6]	G	A	4.918e^-4	0.913	NON_SYNONYMOUS_CODING CG7320	TF binding site mE1_TFBS_sens
3L	22693460	3L_22693460_SNP [dm3] 3L_22700360_SNP [dm6]	A	G	4.940e^-4	0.913	DOWNSTREAM CG45116 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	9078865	2R_9078865_SNP [dm3] 2R_13191360_SNP [dm6]	C	T	4.956e^-4	0.913	INTRON Kdm4B	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9959141	2L_9959141_SNP [dm3] 2L_9959141_SNP [dm6]	G	C	4.959e^-4	0.913	SYNONYMOUS_CODING CG4658 DOWNSTREAM CG5850 & 1 other INTRON CG4658
X	10860319	X_10860319_SNP [dm3] X_10966286_SNP [dm6]	G	A	4.967e^-4	0.913	SYNONYMOUS_CODING C901
3L	20189765	3L_20189765_SNP [dm3] 3L_20196665_SNP [dm6]	C	T	4.975e^-4	0.913	INTRON CG42674
3L	3734689	3L_3734689_SNP [dm3] 3L_3734689_SNP [dm6]	C	T	4.988e^-4	0.913	INTRON CG32264
2R	14571614	2R_14571614_SNP [dm3] 2R_18684109_SNP [dm6]	A	G	4.991e^-4	0.913	UTR_5_PRIME CG44435 & 1 other DOWNSTREAM CG44433
3L	6987157	3L_6987157_DEL [dm3] 3L_6994057_DEL [dm6]	CACCCCAGCC	C	5.001e^-4	0.913	CODON_DELETION bin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12810362	X_12810362_INS [dm3] X_12916329_INS [dm6]	A	TG	5.007e^-4	0.913	DOWNSTREAM CR45626 INTERGENIC
2R	11992805	2R_11992805_SNP [dm3] 2R_16105300_SNP [dm6]	T	G	5.035e^-4	0.913	INTRON Rho1	TF binding site BDTNP1_TFBS_dl
2R	11992813	2R_11992813_SNP [dm3] 2R_16105308_SNP [dm6]	T	A	5.035e^-4	0.913	INTRON Rho1	TF binding site BDTNP1_TFBS_dl
2R	11992816	2R_11992816_SNP [dm3] 2R_16105311_SNP [dm6]	T	G	5.035e^-4	0.913	INTRON Rho1	TF binding site BDTNP1_TFBS_dl
2R	11992818	2R_11992818_SNP [dm3] 2R_16105313_SNP [dm6]	C	T	5.035e^-4	0.913	INTRON Rho1	TF binding site BDTNP1_TFBS_dl
2R	11992821	2R_11992821_SNP [dm3] 2R_16105316_SNP [dm6]	A	T	5.035e^-4	0.913	INTRON Rho1	TF binding site BDTNP1_TFBS_dl
2R	11992831	2R_11992831_SNP [dm3] 2R_16105326_SNP [dm6]	A	G	5.035e^-4	0.913	INTRON Rho1	TF binding site BDTNP1_TFBS_dl
3L	15600360	3L_15600360_SNP [dm3] 3L_15607260_SNP [dm6]	A	G	5.059e^-4	0.913	UTR_3_PRIME RhoGAP71E
3L	1842777	3L_1842777_SNP [dm3] 3L_1842777_SNP [dm6]	G	A	5.064e^-4	0.913	UPSTREAM Cpr62Bc INTERGENIC
3L	2769843	3L_2769843_SNP [dm3] 3L_2769843_SNP [dm6]	G	A	5.065e^-4	0.913	SYNONYMOUS_CODING CG9977	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16926311	3L_16926311_SNP [dm3] 3L_16933211_SNP [dm6]	G	C	5.068e^-4	0.913	INTRON CG11905	TF binding site mE1_TFBS_chinmo
3R	943269	3R_943269_SNP [dm3] 3R_5117547_SNP [dm6]	T	A	5.071e^-4	0.913	INTERGENIC
3R	4296467	3R_4296467_SNP [dm3] 3R_8470745_SNP [dm6]	G	A	5.076e^-4	0.913	INTRON CG45263	TF binding site BDTNP1_TFBS_dl
2R	10334015	2R_10334015_SNP [dm3] 2R_14446510_SNP [dm6]	G	A	5.080e^-4	0.913	INTRON Oaz
2R	6343862	2R_6343862_INS [dm3] 2R_10456357_INS [dm6]	A	ACCCCC	5.081e^-4	0.913	INTRON Galphao & 1 other	TF binding site mE1_TFBS_inv
2R	6343863	2R_6343863_SNP [dm3] 2R_10456358_SNP [dm6]	T	C	5.081e^-4	0.913	INTRON Galphao & 1 other	TF binding site mE1_TFBS_inv
3L	17931876	3L_17931876_SNP [dm3] 3L_17938776_SNP [dm6]	A	G	5.089e^-4	0.913	INTRON CG43174
2R	12170506	2R_12170506_SNP [dm3] 2R_16283001_SNP [dm6]	T	G	5.091e^-4	0.913	UPSTREAM CG9068 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
X	11558250	X_11558250_SNP [dm3] X_11664217_SNP [dm6]	A	T	5.093e^-4	0.913	INTRON Ptp10D
3L	21122680	3L_21122680_SNP [dm3] 3L_21129580_SNP [dm6]	C	T	5.099e^-4	0.913	INTRON ko	TF binding site BDTNP1_TFBS_dl
X	6904479	X_6904479_SNP [dm3] X_7010446_SNP [dm6]	C	T	5.105e^-4	0.913	SPLICE_SITE_REGION cm UPSTREAM Inx7 & 2 others INTRON cm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9139021	2L_9139021_SNP [dm3] 2L_9139021_SNP [dm6]	C	A	5.113e^-4	0.913	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17883800	3L_17883800_SNP [dm3] 3L_17890700_SNP [dm6]	T	C	5.118e^-4	0.913	SYNONYMOUS_CODING CG7402
2L	12957325	2L_12957325_SNP [dm3] 2L_12957325_SNP [dm6]	A	C	5.128e^-4	0.913	INTERGENIC
X	6905463	X_6905463_SNP [dm3] X_7011430_SNP [dm6]	C	T	5.132e^-4	0.913	UPSTREAM CG32736 & 2 others DOWNSTREAM CG3032 INTRON CG32736 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2R	13939860	2R_13939860_SNP [dm3] 2R_18052355_SNP [dm6]	C	A	5.137e^-4	0.913	UPSTREAM Muc55B DOWNSTREAM CG10911 INTERGENIC
X	19425375	X_19425375_SNP [dm3] X_19531342_SNP [dm6]	T	C	5.165e^-4	0.913	NON_SYNONYMOUS_CODING CG12231 DOWNSTREAM CG32532 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12529251	3L_12529251_SNP [dm3] 3L_12536151_SNP [dm6]	T	G	5.165e^-4	0.913	SYNONYMOUS_CODING CG4069 DOWNSTREAM CG10688	TF binding site mE1_TFBS_cad
2R	19163060	2R_19163060_DEL [dm3] 2R_23275537_DEL [dm6]	AA	G	5.167e^-4	0.913	UPSTREAM ord INTERGENIC
2R	19163065	2R_19163065_SNP [dm3] 2R_23275542_SNP [dm6]	C	T	5.167e^-4	0.913	UPSTREAM ord INTERGENIC
2R	19163070	2R_19163070_SNP [dm3] 2R_23275547_SNP [dm6]	G	A	5.167e^-4	0.913	UPSTREAM ord INTERGENIC
2R	18081400	2R_18081400_SNP [dm3] 2R_22193895_SNP [dm6]	A	G	5.171e^-4	0.913	UPSTREAM Swim INTRON Swim
2R	14767026	2R_14767026_SNP [dm3] 2R_18879521_SNP [dm6]	C	T	5.173e^-4	0.913	INTRON sano	TF binding site BDTNP1_TFBS_dl
3R	1003948	3R_1003948_SNP [dm3] 3R_5178226_SNP [dm6]	C	T	5.186e^-4	0.913	DOWNSTREAM cno INTRON cno
3R	11477159	3R_11477159_SNP [dm3] 3R_15651437_SNP [dm6]	C	T	5.199e^-4	0.913	INTERGENIC
2L	6680234	2L_6680234_SNP [dm3] 2L_6680234_SNP [dm6]	G	A	5.206e^-4	0.913	SYNONYMOUS_CODING Nhe3
3L	19122970	3L_19122970_SNP [dm3] 3L_19129870_SNP [dm6]	A	T	5.210e^-4	0.913	UPSTREAM Spn75F INTRON CG14082
3L	7649328	3L_7649328_SNP [dm3] 3L_7656228_SNP [dm6]	C	G	5.225e^-4	0.913	INTRON CG32373 & 1 other	TF binding site mE1_TFBS_cad
2R	17854458	2R_17854458_SNP [dm3] 2R_21966953_SNP [dm6]	C	G	5.257e^-4	0.913	INTRON ppk9
2L	1941319	2L_1941319_SNP [dm3] 2L_1941319_SNP [dm6]	T	A	5.273e^-4	0.913	NON_SYNONYMOUS_CODING CG7337 INTRON CG7337	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7638451	2L_7638451_SNP [dm3] 2L_7638451_SNP [dm6]	A	G	5.273e^-4	0.913	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	10568038	3R_10568038_SNP [dm3] 3R_14742316_SNP [dm6]	C	G	5.274e^-4	0.913	NON_SYNONYMOUS_CODING jvl UPSTREAM eff	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	2047980	3L_2047980_SNP [dm3] 3L_2047980_SNP [dm6]	T	C	5.276e^-4	0.913	NON_SYNONYMOUS_CODING sls
2R	17896583	2R_17896583_SNP [dm3] 2R_22009078_SNP [dm6]	A	C	5.279e^-4	0.913	INTRON CG34370
3L	1833001	3L_1833001_SNP [dm3] 3L_1833001_SNP [dm6]	G	A	5.285e^-4	0.913	INTRON Cpr62Bb
3R	21702745	3R_21702745_SNP [dm3] 3R_25877023_SNP [dm6]	T	A	5.285e^-4	0.913	INTRON Tsp96F	TF binding site BDTNP1_TFBS_twi
3L	17839339	3L_17839339_SNP [dm3] 3L_17846239_SNP [dm6]	A	C	5.286e^-4	0.913	UTR_5_PRIME MED19 UPSTREAM CG7430	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	21338536	3L_21338536_SNP [dm3] 3L_21345436_SNP [dm6]	T	C	5.290e^-4	0.913	NON_SYNONYMOUS_CODING ebd2 INTRON CG32436	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	6905354	X_6905354_INS [dm3] X_7011321_INS [dm6]	C	CTC	5.291e^-4	0.913	UPSTREAM CG32736 & 2 others DOWNSTREAM CG3032 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2R	11900267	2R_11900267_SNP [dm3] 2R_16012762_SNP [dm6]	G	C	5.302e^-4	0.913	SYNONYMOUS_CODING CG8389	TF binding site BDTNP1_TFBS_sna
3L	2769825	3L_2769825_SNP [dm3] 3L_2769825_SNP [dm6]	G	A	5.307e^-4	0.913	SYNONYMOUS_CODING CG9977	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3837362	2L_3837362_SNP [dm3] 2L_3837362_SNP [dm6]	A	G	5.308e^-4	0.913	SYNONYMOUS_CODING slp2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4204471	2L_4204471_SNP [dm3] 2L_4204471_SNP [dm6]	G	T	5.315e^-4	0.913	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_sens
X	22182735	X_22182735_INS [dm3] X_22780899_INS [dm6]	C	CCAGAAAGATATCTTCTATA...	5.332e^-4	0.913	INTRON CR44997
3R	21122224	3R_21122224_SNP [dm3] 3R_25296502_SNP [dm6]	G	T	5.345e^-4	0.913	NON_SYNONYMOUS_CODING CG31097 UPSTREAM CG31102
2L	16585332	2L_16585332_SNP [dm3] 2L_16585332_SNP [dm6]	C	G	5.350e^-4	0.913	INTRON CG42389
2R	16899188	2R_16899188_SNP [dm3] 2R_21011683_SNP [dm6]	G	T	5.356e^-4	0.913	UPSTREAM CG9346 INTRON grau	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	5633411	2R_5633411_SNP [dm3] 2R_9745906_SNP [dm6]	T	C	5.361e^-4	0.913	START_GAINED sqa UTR_5_PRIME sqa UPSTREAM sqa
2L	2966422	2L_2966422_SNP [dm3] 2L_2966422_SNP [dm6]	G	A	5.367e^-4	0.913	UTR_3_PRIME Rbp9
3L	2958960	3L_2958960_SNP [dm3] 3L_2958960_SNP [dm6]	G	T	5.370e^-4	0.913	UTR_3_PRIME Shab DOWNSTREAM CG34025
2R	9663359	2R_9663359_SNP [dm3] 2R_13775854_SNP [dm6]	C	T	5.388e^-4	0.913	SYNONYMOUS_CODING Cpr50Ca	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19387442	3L_19387442_SNP [dm3] 3L_19394342_SNP [dm6]	G	A	5.391e^-4	0.913	INTRON CG32206
2L	12959866	2L_12959866_SNP [dm3] 2L_12959866_SNP [dm6]	T	C	5.392e^-4	0.913	INTERGENIC
2L	12959885	2L_12959885_SNP [dm3] 2L_12959885_SNP [dm6]	C	T	5.392e^-4	0.913	INTERGENIC
3L	17928775	3L_17928775_SNP [dm3] 3L_17935675_SNP [dm6]	C	T	5.417e^-4	0.913	DOWNSTREAM CG43173 INTRON CG43174
2R	17571839	2R_17571839_SNP [dm3] 2R_21684334_SNP [dm6]	T	C	5.425e^-4	0.913	SYNONYMOUS_CODING CG30263 UPSTREAM CG10306	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9108922	2L_9108922_SNP [dm3] 2L_9108922_SNP [dm6]	C	T	5.449e^-4	0.913	INTERGENIC
3R	20956547	3R_20956547_SNP [dm3] 3R_25130825_SNP [dm6]	G	C	5.453e^-4	0.913	UPSTREAM Bili INTRON Clbn
3L	6213452	3L_6213452_SNP [dm3] 3L_6220352_SNP [dm6]	A	G	5.453e^-4	0.913	UPSTREAM pncr008:3L INTERGENIC
X	15451413	X_15451413_SNP [dm3] X_15557380_SNP [dm6]	T	C	5.455e^-4	0.913	INTERGENIC
2R	9804321	2R_9804321_SNP [dm3] 2R_13916816_SNP [dm6]	A	G	5.457e^-4	0.913	INTRON shot
3L	7627410	3L_7627410_SNP [dm3] 3L_7634310_SNP [dm6]	T	A	5.472e^-4	0.913	INTRON CG33275
3L	7627523	3L_7627523_SNP [dm3] 3L_7634423_SNP [dm6]	C	T	5.472e^-4	0.913	INTRON CG33275
3L	19018715	3L_19018715_SNP [dm3] 3L_19025615_SNP [dm6]	C	G	5.472e^-4	0.913	INTRON nkd
3L	19019050	3L_19019050_SNP [dm3] 3L_19025950_SNP [dm6]	C	A	5.472e^-4	0.913	INTRON nkd
3L	2032075	3L_2032075_SNP [dm3] 3L_2032075_SNP [dm6]	G	A	5.477e^-4	0.913	INTERGENIC
3L	2032135	3L_2032135_SNP [dm3] 3L_2032135_SNP [dm6]	A	C	5.477e^-4	0.913	INTERGENIC
3L	2032147	3L_2032147_SNP [dm3] 3L_2032147_SNP [dm6]	G	A	5.477e^-4	0.913	INTERGENIC
2L	32124	2L_32124_SNP [dm3] 2L_32124_SNP [dm6]	C	A	5.479e^-4	0.913	NON_SYNONYMOUS_CODING Cda5 INTRON Cda5	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2L	9015401	2L_9015401_SNP [dm3] 2L_9015401_SNP [dm6]	C	T	5.480e^-4	0.913	INTERGENIC	TF binding site mE1_TFBS_inv
3L	11148905	3L_11148905_INS [dm3] 3L_11155805_INS [dm6]	G	GG	5.480e^-4	0.913	INTRON CG32082
2R	13132583	2R_13132583_SNP [dm3] 2R_17245078_SNP [dm6]	G	A	5.484e^-4	0.913	DOWNSTREAM CG18469 INTRON mbl
2L	4380186	2L_4380186_SNP [dm3] 2L_4380186_SNP [dm6]	G	A	5.495e^-4	0.913	UTR_3_PRIME Traf4 DOWNSTREAM CG17612	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18597179	2R_18597179_SNP [dm3] 2R_22709674_SNP [dm6]	G	A	5.500e^-4	0.913	INTRON CG30275
2R	6755073	2R_6755073_SNP [dm3] 2R_10867568_SNP [dm6]	A	G	5.504e^-4	0.913	INTRON CG30015
3L	7523298	3L_7523298_SNP [dm3] 3L_7530198_SNP [dm6]	G	C	5.507e^-4	0.913	INTRON lqf
X	6238594	X_6238594_SNP [dm3] X_6344561_SNP [dm6]	T	G	5.508e^-4	0.913	DOWNSTREAM CG3842 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	9662119	2R_9662119_SNP [dm3] 2R_13774614_SNP [dm6]	A	T	5.514e^-4	0.913	NON_SYNONYMOUS_CODING Cpr50Ca	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5376860	2L_5376860_SNP [dm3] 2L_5376860_SNP [dm6]	T	G	5.522e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	19310730	3R_19310730_SNP [dm3] 3R_23485008_SNP [dm6]	G	A	5.525e^-4	0.913	SYNONYMOUS_CODING Ir94g UPSTREAM CR44324	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19387540	3L_19387540_SNP [dm3] 3L_19394440_SNP [dm6]	T	C	5.534e^-4	0.913	INTRON CG32206
3L	7400088	3L_7400088_INS [dm3] 3L_7406988_INS [dm6]	T	TC	5.534e^-4	0.913	DOWNSTREAM pncr015:3L INTERGENIC
X	21324963	X_21324963_DEL [dm3] X_21453936_DEL [dm6]	TT	T	5.541e^-4	0.913	INTRON CG42343
2R	19781346	2R_19781346_SNP [dm3] 2R_23893823_SNP [dm6]	T	C	5.542e^-4	0.913	SYNONYMOUS_CODING Upf3 DOWNSTREAM DNA-ligI	TF binding site mE1_TFBS_cad mE1_TFBS_HSA

Missing results

By genomic position
Variant impact
Gene name

pc_FPKP_PElem_HC phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results