DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.845e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	4.7879	0.0287

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1620 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	4331250	3R_4331250_SNP [dm3] 3R_8505528_SNP [dm6]	T	G	8.687e^-7	0.984	INTERGENIC	TF binding site mE1_TFBS_cad
3L	17853812	3L_17853812_SNP [dm3] 3L_17860712_SNP [dm6]	C	G	5.036e^-6	0.984	DOWNSTREAM CG34002 INTERGENIC
X	1354610	X_1354610_INS [dm3] X_1460577_INS [dm6]	T	TA	5.061e^-6	0.984	UTR_5_PRIME CG14786 DOWNSTREAM CG14787	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
2R	11688234	2R_11688234_SNP [dm3] 2R_15800729_SNP [dm6]	C	A	5.438e^-6	0.984	INTRON Zasp52 & 1 other
2R	16295473	2R_16295473_SNP [dm3] 2R_20407968_SNP [dm6]	C	T	6.961e^-6	0.984	INTERGENIC
3L	15285419	3L_15285419_SNP [dm3] 3L_15292319_SNP [dm6]	C	G	7.706e^-6	0.984	INTERGENIC
3L	16962274	3L_16962274_SNP [dm3] 3L_16969174_SNP [dm6]	T	A	7.720e^-6	0.984	UPSTREAM Exn DOWNSTREAM Nc73EF INTERGENIC
3L	16962282	3L_16962282_SNP [dm3] 3L_16969182_SNP [dm6]	T	G	7.720e^-6	0.984	UPSTREAM Exn DOWNSTREAM Nc73EF INTERGENIC
2R	14366869	2R_14366869_SNP [dm3] 2R_18479364_SNP [dm6]	T	A	7.863e^-6	0.984	INTRON CG30116
3L	17853328	3L_17853328_SNP [dm3] 3L_17860228_SNP [dm6]	T	G	9.658e^-6	0.984	SYNONYMOUS_CODING CG34002
3L	3493158	3L_3493158_SNP [dm3] 3L_3493158_SNP [dm6]	T	C	9.835e^-6	0.984	INTRON CG42324
2R	9740764	2R_9740764_SNP [dm3] 2R_13853259_SNP [dm6]	C	G	1.118e^-5	0.984	SYNONYMOUS_CODING CG6543 DOWNSTREAM CG30485	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_sna mE1_TFBS_inv
3L	17850683	3L_17850683_SNP [dm3] 3L_17857583_SNP [dm6]	C	T	1.129e^-5	0.984	UPSTREAM CG5535 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
X	5828615	X_5828615_SNP [dm3] X_5934582_SNP [dm6]	T	C	1.196e^-5	0.984	INTRON CG3726
2R	14749940	2R_14749940_SNP [dm3] 2R_18862435_SNP [dm6]	A	T	1.372e^-5	0.984	UPSTREAM CG43069 & 1 other INTERGENIC
2R	19644659	2R_19644659_SNP [dm3] 2R_23757136_SNP [dm6]	C	A	1.405e^-5	0.984	NON_SYNONYMOUS_CODING CG9850 INTRON CG9850
2R	19323714	2R_19323714_SNP [dm3] 2R_23436191_SNP [dm6]	T	A	1.414e^-5	0.984	INTERGENIC
2R	14749941	2R_14749941_SNP [dm3] 2R_18862436_SNP [dm6]	A	T	1.471e^-5	0.984	UPSTREAM CG43069 & 1 other INTERGENIC
2R	14366894	2R_14366894_DEL [dm3] 2R_18479389_DEL [dm6]	AA	T	1.497e^-5	0.984	INTRON CG30116
3L	18789180	3L_18789180_SNP [dm3] 3L_18796080_SNP [dm6]	G	C	1.596e^-5	0.984	INTRON ftz-f1
3L	7628925	3L_7628925_SNP [dm3] 3L_7635825_SNP [dm6]	G	A	1.610e^-5	0.984	INTRON CG33275	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6903921	3R_6903921_SNP [dm3] 3R_11078199_SNP [dm6]	T	C	1.670e^-5	0.984	INTERGENIC
2L	12486790	2L_12486790_SNP [dm3] 2L_12486790_SNP [dm6]	A	G	1.697e^-5	0.984	INTRON bun
3L	10115037	3L_10115037_SNP [dm3] 3L_10121937_SNP [dm6]	C	T	1.769e^-5	0.984	INTRON dpr6
2R	14414383	2R_14414383_SNP [dm3] 2R_18526878_SNP [dm6]	C	T	1.824e^-5	0.984	UPSTREAM CG10924 DOWNSTREAM CG43066 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	8563519	2R_8563519_SNP [dm3] 2R_12676014_SNP [dm6]	T	G	1.937e^-5	0.984	UPSTREAM CG42708 INTRON CG42708	TF binding site mE1_TFBS_inv
2L	9630107	2L_9630107_SNP [dm3] 2L_9630107_SNP [dm6]	T	C	1.973e^-5	0.984	INTERGENIC
2R	12170376	2R_12170376_SNP [dm3] 2R_16282871_SNP [dm6]	G	A	2.499e^-5	0.984	UTR_5_PRIME CG7755 UPSTREAM CG9068	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4201351	3R_4201351_SNP [dm3] 3R_8375629_SNP [dm6]	A	G	2.896e^-5	0.984	INTRON CG45263
2R	14749944	2R_14749944_SNP [dm3] 2R_18862439_SNP [dm6]	G	T	2.902e^-5	0.984	UPSTREAM CG43069 & 1 other INTERGENIC
3R	25787209	3R_25787209_SNP [dm3] 3R_29961487_SNP [dm6]	C	T	2.953e^-5	0.984	INTRON TkR99D
3L	22367622	3L_22367622_SNP [dm3] 3L_22374522_SNP [dm6]	C	A	3.003e^-5	0.984	INTRON Ten-m	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	4659122	3L_4659122_INS [dm3] 3L_4659122_INS [dm6]	A	TTG	3.121e^-5	0.984	INTRON axo
3L	8673546	3L_8673546_SNP [dm3] 3L_8680446_SNP [dm6]	G	A	3.304e^-5	0.984	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3R	12433763	3R_12433763_SNP [dm3] 3R_16608041_SNP [dm6]	T	C	3.365e^-5	0.984	INTERGENIC
3R	6590222	3R_6590222_SNP [dm3] 3R_10764500_SNP [dm6]	C	T	3.386e^-5	0.984	SYNONYMOUS_CODING Cap-H2
X	5468501	X_5468501_SNP [dm3] X_5574468_SNP [dm6]	C	T	3.652e^-5	0.984	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11664253	3L_11664253_SNP [dm3] 3L_11671153_SNP [dm6]	T	C	3.664e^-5	0.984	INTRON CG32085
3R	10801736	3R_10801736_SNP [dm3] 3R_14976014_SNP [dm6]	C	T	3.670e^-5	0.984	INTERGENIC
3L	2437872	3L_2437872_SNP [dm3] 3L_2437872_SNP [dm6]	C	T	3.714e^-5	0.984	INTRON CG45186	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	11221708	3L_11221708_SNP [dm3] 3L_11228608_SNP [dm6]	T	C	3.739e^-5	0.984	DOWNSTREAM CG42671 INTRON CG42671
3R	14631431	3R_14631431_SNP [dm3] 3R_18805709_SNP [dm6]	G	C	3.989e^-5	0.984	UTR_3_PRIME CG18208
2L	2969058	2L_2969058_SNP [dm3] 2L_2969058_SNP [dm6]	G	A	4.086e^-5	0.984	SYNONYMOUS_CODING Ts DOWNSTREAM Rbp9 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	5828644	X_5828644_SNP [dm3] X_5934611_SNP [dm6]	G	A	4.096e^-5	0.984	INTRON CG3726
3L	17867107	3L_17867107_SNP [dm3] 3L_17874007_SNP [dm6]	T	C	4.136e^-5	0.984	UPSTREAM CR43087 INTERGENIC	TF binding site mE1_TFBS_Trl transposable element FlyBase
2R	16654310	2R_16654310_SNP [dm3] 2R_20766805_SNP [dm6]	G	T	4.340e^-5	0.984	DOWNSTREAM CR44665 EXON CR44665
3L	15285245	3L_15285245_SNP [dm3] 3L_15292145_SNP [dm6]	C	T	4.356e^-5	0.984	INTERGENIC
3R	6590256	3R_6590256_SNP [dm3] 3R_10764534_SNP [dm6]	G	A	4.385e^-5	0.984	NON_SYNONYMOUS_CODING Cap-H2
3L	14215711	3L_14215711_SNP [dm3] 3L_14222611_SNP [dm6]	A	T	4.452e^-5	0.984	INTRON nuf
2R	19622832	2R_19622832_SNP [dm3] 2R_23735309_SNP [dm6]	C	A	4.470e^-5	0.984	UTR_3_PRIME egl DOWNSTREAM Sesn
3L	5430349	3L_5430349_INS [dm3] 3L_5437249_INS [dm6]	T	TT	4.831e^-5	0.984	INTRON CG34391
2R	15188894	2R_15188894_SNP [dm3] 2R_19301389_SNP [dm6]	C	T	4.841e^-5	0.984	INTRON Tab2	TF binding site mE1_TFBS_inv
2R	15188897	2R_15188897_SNP [dm3] 2R_19301392_SNP [dm6]	A	G	4.841e^-5	0.984	INTRON Tab2	TF binding site mE1_TFBS_inv
2L	7651197	2L_7651197_SNP [dm3] 2L_7651197_SNP [dm6]	A	C	5.033e^-5	0.984	INTRON Slob
2L	10629949	2L_10629949_SNP [dm3] 2L_10629949_SNP [dm6]	T	C	5.234e^-5	0.984	SYNONYMOUS_CODING CG7329
2L	2186921	2L_2186921_SNP [dm3] 2L_2186921_SNP [dm6]	T	C	5.363e^-5	0.984	UPSTREAM tRNA:CR31946 DOWNSTREAM CR44066 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	11304795	2R_11304795_SNP [dm3] 2R_15417290_SNP [dm6]	T	A	5.447e^-5	0.984	INTRON CG43729
3L	9944688	3L_9944688_SNP [dm3] 3L_9951588_SNP [dm6]	T	C	5.500e^-5	0.984	INTRON CG34356
3L	17866379	3L_17866379_SNP [dm3] 3L_17873279_SNP [dm6]	T	G	5.655e^-5	0.984	INTERGENIC	transposable element FlyBase
3L	6496851	3L_6496851_SNP [dm3] 3L_6503751_SNP [dm6]	C	T	5.679e^-5	0.984	INTRON sfl	TF binding site BDTNP1_TFBS_dl
3L	21261293	3L_21261293_SNP [dm3] 3L_21268193_SNP [dm6]	C	A	5.765e^-5	0.984	UPSTREAM CR45162 & 1 other DOWNSTREAM CG9389 INTRON CG9391
3L	11590825	3L_11590825_SNP [dm3] 3L_11597725_SNP [dm6]	A	T	5.777e^-5	0.984	INTRON CG7368
2R	11304797	2R_11304797_SNP [dm3] 2R_15417292_SNP [dm6]	C	T	5.844e^-5	0.984	INTRON CG43729
2L	2786334	2L_2786334_DEL [dm3] 2L_2786334_DEL [dm6]	AA	A	5.966e^-5	0.984	INTRON Syt1
2L	2882567	2L_2882567_SNP [dm3] 2L_2882567_SNP [dm6]	G	A	6.023e^-5	0.984	SYNONYMOUS_CODING NTPase INTRON NTPase	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	3703864	3R_3703864_SNP [dm3] 3R_7878142_SNP [dm6]	A	G	6.030e^-5	0.984	INTRON CG17816
2L	10630463	2L_10630463_SNP [dm3] 2L_10630463_SNP [dm6]	T	C	6.075e^-5	0.984	SYNONYMOUS_CODING CG7329	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	21823957	3L_21823957_SNP [dm3] 3L_21830857_SNP [dm6]	A	C	6.179e^-5	0.984	NON_SYNONYMOUS_CODING CG7148 UPSTREAM CR43309	TF binding site mE1_TFBS_cad
3L	21835297	3L_21835297_DEL [dm3] 3L_21842197_DEL [dm6]	GCTG	G	6.179e^-5	0.984	CODON_DELETION CG14563 UPSTREAM P5CDh1	TF binding site BDTNP1_TFBS_dl
3L	21840219	3L_21840219_SNP [dm3] 3L_21847119_SNP [dm6]	T	G	6.179e^-5	0.984	INTRON mub
3L	21845479	3L_21845479_SNP [dm3] 3L_21852379_SNP [dm6]	C	T	6.179e^-5	0.984	INTRON mub
3R	6591817	3R_6591817_SNP [dm3] 3R_10766095_SNP [dm6]	T	G	6.316e^-5	0.984	SYNONYMOUS_CODING Cap-H2 UTR_3_PRIME Cap-H2 DOWNSTREAM TfIIFbeta
3R	6591819	3R_6591819_SNP [dm3] 3R_10766097_SNP [dm6]	G	A	6.316e^-5	0.984	NON_SYNONYMOUS_CODING Cap-H2 UTR_3_PRIME Cap-H2 DOWNSTREAM TfIIFbeta
3L	11590702	3L_11590702_DEL [dm3] 3L_11597602_DEL [dm6]	GT	C	6.338e^-5	0.984	INTRON CG7368
3L	8443510	3L_8443510_SNP [dm3] 3L_8450410_SNP [dm6]	G	T	6.342e^-5	0.984	UTR_5_PRIME Gug UPSTREAM Gug	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3L	1682411	3L_1682411_SNP [dm3] 3L_1682411_SNP [dm6]	C	T	6.443e^-5	0.984	INTRON CG7991
2L	7651223	2L_7651223_SNP [dm3] 2L_7651223_SNP [dm6]	C	T	6.505e^-5	0.984	INTRON Slob
2R	9337480	2R_9337480_SNP [dm3] 2R_13449975_SNP [dm6]	A	G	6.560e^-5	0.984	UPSTREAM cnn & 1 other INTRON cnn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_Ubx
3L	14215710	3L_14215710_SNP [dm3] 3L_14222610_SNP [dm6]	G	T	6.580e^-5	0.984	INTRON nuf
2R	16224522	2R_16224522_SNP [dm3] 2R_20337017_SNP [dm6]	A	T	6.617e^-5	0.984	INTERGENIC
3R	22560061	3R_22560061_SNP [dm3] 3R_26734339_SNP [dm6]	G	A	6.639e^-5	0.984	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15443178	2R_15443178_SNP [dm3] 2R_19555673_SNP [dm6]	T	C	6.684e^-5	0.984	INTRON sm	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	7004724	3L_7004724_SNP [dm3] 3L_7011624_SNP [dm6]	G	A	6.862e^-5	0.984	INTRON Mp
3L	17882423	3L_17882423_SNP [dm3] 3L_17889323_SNP [dm6]	C	T	7.043e^-5	0.984	SPLICE_SITE_REGION CG7402 INTRON CG7402
2R	11304715	2R_11304715_SNP [dm3] 2R_15417210_SNP [dm6]	A	C	7.163e^-5	0.984	INTRON CG43729
2R	11304730	2R_11304730_SNP [dm3] 2R_15417225_SNP [dm6]	T	A	7.163e^-5	0.984	INTRON CG43729
2R	11304731	2R_11304731_SNP [dm3] 2R_15417226_SNP [dm6]	A	T	7.163e^-5	0.984	INTRON CG43729
2R	11304743	2R_11304743_SNP [dm3] 2R_15417238_SNP [dm6]	A	C	7.163e^-5	0.984	INTRON CG43729
2R	11304747	2R_11304747_SNP [dm3] 2R_15417242_SNP [dm6]	T	A	7.163e^-5	0.984	INTRON CG43729
3L	4659254	3L_4659254_SNP [dm3] 3L_4659254_SNP [dm6]	A	T	7.303e^-5	0.984	INTRON axo
3R	14449333	3R_14449333_SNP [dm3] 3R_18623611_SNP [dm6]	C	A	7.480e^-5	0.984	INTRON qin
3R	17218855	3R_17218855_SNP [dm3] 3R_21393133_SNP [dm6]	T	A	7.524e^-5	0.984	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	9563296	3L_9563296_INS [dm3] 3L_9570196_INS [dm6]	C	CC	7.548e^-5	0.984	INTRON CG42673
3L	15285144	3L_15285144_SNP [dm3] 3L_15292044_SNP [dm6]	A	G	7.679e^-5	0.984	INTERGENIC
2L	19818313	2L_19818313_SNP [dm3] 2L_19818313_SNP [dm6]	A	T	7.707e^-5	0.984	INTRON sick	transposable element FlyBase
2R	9337481	2R_9337481_SNP [dm3] 2R_13449976_SNP [dm6]	T	C	7.713e^-5	0.984	UPSTREAM cnn & 1 other INTRON cnn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_Ubx
3L	18838906	3L_18838906_SNP [dm3] 3L_18845806_SNP [dm6]	C	A	7.731e^-5	0.984	INTRON Indy	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11590742	3L_11590742_SNP [dm3] 3L_11597642_SNP [dm6]	G	A	7.786e^-5	0.984	INTRON CG7368
3L	11590758	3L_11590758_SNP [dm3] 3L_11597658_SNP [dm6]	A	T	7.786e^-5	0.984	INTRON CG7368
3L	11590769	3L_11590769_DEL [dm3] 3L_11597669_DEL [dm6]	CA	C	7.786e^-5	0.984	INTRON CG7368
2R	9932947	2R_9932947_SNP [dm3] 2R_14045442_SNP [dm6]	C	T	7.854e^-5	0.984	INTRON mam
3L	12028199	3L_12028199_SNP [dm3] 3L_12035099_SNP [dm6]	G	A	7.885e^-5	0.984	INTRON rols	TF binding site BDTNP1_TFBS_twi
3L	13272412	3L_13272412_SNP [dm3] 3L_13279312_SNP [dm6]	G	T	8.000e^-5	0.984	UTR_3_PRIME caps UPSTREAM tRNA:CR32123:Psi
3L	10538877	3L_10538877_SNP [dm3] 3L_10545777_SNP [dm6]	G	A	8.093e^-5	0.984	INTRON A2bp1
2R	19323715	2R_19323715_SNP [dm3] 2R_23436192_SNP [dm6]	T	A	8.125e^-5	0.984	INTERGENIC
X	7346778	X_7346778_SNP [dm3] X_7452745_SNP [dm6]	C	T	8.193e^-5	0.984	NON_SYNONYMOUS_CODING CG43198 DOWNSTREAM CR43199 & 1 other
X	7348161	X_7348161_SNP [dm3] X_7454128_SNP [dm6]	T	A	8.196e^-5	0.984	UPSTREAM CG43198 INTERGENIC
3L	21834424	3L_21834424_DEL [dm3] 3L_21841324_DEL [dm6]	CGGTC	C	8.222e^-5	0.984	UTR_5_PRIME P5CDh1 UPSTREAM P5CDh1 DOWNSTREAM CG14563	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	17870830	3L_17870830_SNP [dm3] 3L_17877730_SNP [dm6]	G	A	8.300e^-5	0.984	INTERGENIC
3L	21850261	3L_21850261_SNP [dm3] 3L_21857161_SNP [dm6]	G	A	8.480e^-5	0.984	INTRON mub
3R	18292082	3R_18292082_SNP [dm3] 3R_22466360_SNP [dm6]	C	T	8.536e^-5	0.984	SYNONYMOUS_CODING Pebp1 DOWNSTREAM CG5377 & 1 other	TF binding site mE1_TFBS_cad
2L	7700445	2L_7700445_SNP [dm3] 2L_7700445_SNP [dm6]	C	G	8.552e^-5	0.984	NON_SYNONYMOUS_CODING Tep2
2R	12466545	2R_12466545_DEL [dm3] 2R_16579040_DEL [dm6]	CAC	C	8.622e^-5	0.984	UPSTREAM Cdk4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z
2R	14559065	2R_14559065_SNP [dm3] 2R_18671560_SNP [dm6]	G	T	8.622e^-5	0.984	INTRON edl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6030103	2L_6030103_SNP [dm3] 2L_6030103_SNP [dm6]	T	C	8.652e^-5	0.984	INTRON CG9109
2R	11304765	2R_11304765_SNP [dm3] 2R_15417260_SNP [dm6]	T	C	8.694e^-5	0.984	INTRON CG43729
3L	1843145	3L_1843145_SNP [dm3] 3L_1843145_SNP [dm6]	C	T	8.732e^-5	0.984	INTERGENIC
2R	18427191	2R_18427191_SNP [dm3] 2R_22539686_SNP [dm6]	T	C	8.789e^-5	0.984	INTRON px
X	900360	X_900360_SNP [dm3] X_1006327_SNP [dm6]	T	C	8.797e^-5	0.984	INTERGENIC
3L	11663985	3L_11663985_SNP [dm3] 3L_11670885_SNP [dm6]	G	A	8.909e^-5	0.984	INTRON CG32085
3L	4659205	3L_4659205_SNP [dm3] 3L_4659205_SNP [dm6]	G	T	9.122e^-5	0.984	INTRON axo
3L	4659225	3L_4659225_SNP [dm3] 3L_4659225_SNP [dm6]	G	C	9.122e^-5	0.984	INTRON axo
3L	4659235	3L_4659235_SNP [dm3] 3L_4659235_SNP [dm6]	T	C	9.122e^-5	0.984	INTRON axo
3L	1259428	3L_1259428_SNP [dm3] 3L_1259428_SNP [dm6]	G	T	9.134e^-5	0.984	INTRON CG9134
3L	13298766	3L_13298766_SNP [dm3] 3L_13305666_SNP [dm6]	C	T	9.134e^-5	0.984	INTERGENIC
3L	3658296	3L_3658296_SNP [dm3] 3L_3658296_SNP [dm6]	T	C	9.134e^-5	0.984	UPSTREAM CG43098 INTERGENIC
3L	8688999	3L_8688999_SNP [dm3] 3L_8695899_SNP [dm6]	T	A	9.234e^-5	0.984	INTERGENIC
2L	2784871	2L_2784871_SNP [dm3] 2L_2784871_SNP [dm6]	T	G	9.260e^-5	0.984	UTR_3_PRIME Syt1 INTRON Syt1
3L	10539615	3L_10539615_SNP [dm3] 3L_10546515_SNP [dm6]	G	A	9.267e^-5	0.984	INTRON A2bp1
2R	15188954	2R_15188954_SNP [dm3] 2R_19301449_SNP [dm6]	A	T	9.270e^-5	0.984	INTRON Tab2	TF binding site mE1_TFBS_inv
3L	11590992	3L_11590992_SNP [dm3] 3L_11597892_SNP [dm6]	T	G	9.341e^-5	0.984	INTRON CG7368
2R	16354594	2R_16354594_SNP [dm3] 2R_20467089_SNP [dm6]	G	T	9.358e^-5	0.984	INTRON CG12484
3L	11590705	3L_11590705_SNP [dm3] 3L_11597605_SNP [dm6]	C	G	9.496e^-5	0.984	INTRON CG7368
3L	12847405	3L_12847405_SNP [dm3] 3L_12854305_SNP [dm6]	T	A	9.574e^-5	0.984	INTRON Ent3
3R	27355855	3R_27355855_SNP [dm3] 3R_31530133_SNP [dm6]	T	C	9.737e^-5	0.984	INTERGENIC
3L	8760685	3L_8760685_SNP [dm3] 3L_8767585_SNP [dm6]	C	T	9.862e^-5	0.984	INTRON Fhos
3L	8760686	3L_8760686_SNP [dm3] 3L_8767586_SNP [dm6]	C	T	9.862e^-5	0.984	INTRON Fhos
3L	8760691	3L_8760691_SNP [dm3] 3L_8767591_SNP [dm6]	C	T	9.862e^-5	0.984	INTRON Fhos
2L	1946017	2L_1946017_SNP [dm3] 2L_1946017_SNP [dm6]	C	A	9.917e^-5	0.984	SYNONYMOUS_CODING CG33673 UPSTREAM CG15357	regulatory region REDfly_CRMs
3L	4659246	3L_4659246_SNP [dm3] 3L_4659246_SNP [dm6]	A	C	1.009e^-4	0.984	INTRON axo
3L	5399535	3L_5399535_SNP [dm3] 3L_5406435_SNP [dm6]	T	A	1.014e^-4	0.984	INTERGENIC
2R	8533589	2R_8533589_SNP [dm3] 2R_12646084_SNP [dm6]	T	A	1.028e^-4	0.984	UPSTREAM CG8785 INTRON CG8785	TF binding site mE1_TFBS_cad
3L	3894668	3L_3894668_SNP [dm3] 3L_3894668_SNP [dm6]	A	C	1.031e^-4	0.984	UTR_3_PRIME Fie DOWNSTREAM Gr63a
3L	3894670	3L_3894670_SNP [dm3] 3L_3894670_SNP [dm6]	A	T	1.031e^-4	0.984	UTR_3_PRIME Fie DOWNSTREAM Gr63a
2R	16371035	2R_16371035_SNP [dm3] 2R_20483530_SNP [dm6]	G	T	1.031e^-4	0.984	INTERGENIC
3L	13294528	3L_13294528_SNP [dm3] 3L_13301428_SNP [dm6]	A	C	1.035e^-4	0.984	UPSTREAM SP & 1 other INTERGENIC
3R	22526107	3R_22526107_SNP [dm3] 3R_26700385_SNP [dm6]	T	G	1.035e^-4	0.984	INTRON amon
3L	21852132	3L_21852132_SNP [dm3] 3L_21859032_SNP [dm6]	A	T	1.036e^-4	0.984	INTRON mub
2L	17624792	2L_17624792_SNP [dm3] 2L_17624792_SNP [dm6]	C	A	1.039e^-4	0.984	DOWNSTREAM CR44413 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	9523928	3L_9523928_SNP [dm3] 3L_9530828_SNP [dm6]	A	T	1.047e^-4	0.984	SYNONYMOUS_CODING Or67a
2L	7700264	2L_7700264_SNP [dm3] 2L_7700264_SNP [dm6]	A	G	1.049e^-4	0.984	NON_SYNONYMOUS_CODING Tep2
2R	9333421	2R_9333421_SNP [dm3] 2R_13445916_SNP [dm6]	C	T	1.056e^-4	0.984	SYNONYMOUS_CODING CG30062 UPSTREAM cnn INTRON cnn	TF binding site mE1_TFBS_HSA
2R	9660003	2R_9660003_DEL [dm3] 2R_13772498_DEL [dm6]	AA	A	1.056e^-4	0.984	INTRON Cpr50Ca
3L	11383402	3L_11383402_SNP [dm3] 3L_11390302_SNP [dm6]	A	C	1.065e^-4	0.984	INTERGENIC
3R	6590867	3R_6590867_SNP [dm3] 3R_10765145_SNP [dm6]	T	C	1.076e^-4	0.984	NON_SYNONYMOUS_CODING Cap-H2
2R	10819861	2R_10819861_SNP [dm3] 2R_14932356_SNP [dm6]	A	T	1.082e^-4	0.984	INTRON CG10253
X	8247428	X_8247428_SNP [dm3] X_8353395_SNP [dm6]	T	G	1.083e^-4	0.984	INTRON nAChRalpha3
2R	17264737	2R_17264737_SNP [dm3] 2R_21377232_SNP [dm6]	C	T	1.083e^-4	0.984	INTRON cv-2
X	2893998	X_2893998_SNP [dm3] X_2999965_SNP [dm6]	T	A	1.084e^-4	0.984	INTRON kirre
3L	13272545	3L_13272545_SNP [dm3] 3L_13279445_SNP [dm6]	C	G	1.094e^-4	0.984	UTR_3_PRIME caps UPSTREAM tRNA:CR32123:Psi
3L	8760774	3L_8760774_SNP [dm3] 3L_8767674_SNP [dm6]	G	A	1.114e^-4	0.984	INTRON Fhos
3L	8760781	3L_8760781_SNP [dm3] 3L_8767681_SNP [dm6]	G	T	1.114e^-4	0.984	INTRON Fhos
3L	19217897	3L_19217897_SNP [dm3] 3L_19224797_SNP [dm6]	G	A	1.115e^-4	0.984	INTRON fz2
3L	19217913	3L_19217913_SNP [dm3] 3L_19224813_SNP [dm6]	A	G	1.115e^-4	0.984	INTRON fz2
3L	16926311	3L_16926311_SNP [dm3] 3L_16933211_SNP [dm6]	G	C	1.128e^-4	0.984	INTRON CG11905	TF binding site mE1_TFBS_chinmo
2R	11065328	2R_11065328_SNP [dm3] 2R_15177823_SNP [dm6]	G	C	1.132e^-4	0.984	INTRON igl
2R	17730539	2R_17730539_SNP [dm3] 2R_21843034_SNP [dm6]	A	G	1.138e^-4	0.984	DOWNSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	27355717	3R_27355717_SNP [dm3] 3R_31529995_SNP [dm6]	T	A	1.141e^-4	0.984	INTERGENIC
2R	5689243	2R_5689243_SNP [dm3] 2R_9801738_SNP [dm6]	T	A	1.143e^-4	0.984	INTRON CG1688
2R	13994405	2R_13994405_SNP [dm3] 2R_18106900_SNP [dm6]	G	A	1.149e^-4	0.984	INTRON CG5756
3L	7189128	3L_7189128_SNP [dm3] 3L_7196028_SNP [dm6]	A	C	1.151e^-4	0.984	INTERGENIC
3L	11590648	3L_11590648_SNP [dm3] 3L_11597548_SNP [dm6]	T	C	1.154e^-4	0.984	INTRON CG7368
2R	19781346	2R_19781346_SNP [dm3] 2R_23893823_SNP [dm6]	T	C	1.154e^-4	0.984	SYNONYMOUS_CODING Upf3 DOWNSTREAM DNA-ligI	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	5430378	3L_5430378_SNP [dm3] 3L_5437278_SNP [dm6]	A	T	1.157e^-4	0.984	INTRON CG34391
2R	5687582	2R_5687582_SNP [dm3] 2R_9800077_SNP [dm6]	A	G	1.183e^-4	0.984	INTRON CG1688
3L	10471000	3L_10471000_SNP [dm3] 3L_10477900_SNP [dm6]	G	T	1.189e^-4	0.984	INTERGENIC
3L	11590723	3L_11590723_SNP [dm3] 3L_11597623_SNP [dm6]	G	A	1.191e^-4	0.984	INTRON CG7368
2R	18020071	2R_18020071_SNP [dm3] 2R_22132566_SNP [dm6]	A	G	1.200e^-4	0.984	INTERGENIC
X	2578238	X_2578238_SNP [dm3] X_2684205_SNP [dm6]	G	A	1.207e^-4	0.984	UPSTREAM CR44470 INTERGENIC	TF binding site mE1_TFBS_inv
3R	11106076	3R_11106076_SNP [dm3] 3R_15280354_SNP [dm6]	G	T	1.215e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9628506	3L_9628506_SNP [dm3] 3L_9635406_SNP [dm6]	T	C	1.218e^-4	0.984	INTRON fry
3L	17882300	3L_17882300_SNP [dm3] 3L_17889200_SNP [dm6]	C	A	1.219e^-4	0.984	INTRON CG7402
2L	17631778	2L_17631778_SNP [dm3] 2L_17631778_SNP [dm6]	C	A	1.221e^-4	0.984	INTERGENIC
3R	22569214	3R_22569214_SNP [dm3] 3R_26743492_SNP [dm6]	G	T	1.223e^-4	0.984	INTERGENIC
X	4918383	X_4918383_SNP [dm3] X_5024350_SNP [dm6]	A	G	1.228e^-4	0.984	INTRON CR44833	regulatory region REDfly_CRMs
3L	3721062	3L_3721062_SNP [dm3] 3L_3721062_SNP [dm6]	G	A	1.238e^-4	0.984	INTRON CG32264
3L	3721358	3L_3721358_SNP [dm3] 3L_3721358_SNP [dm6]	G	T	1.238e^-4	0.984	INTRON CG32264
3L	4659173	3L_4659173_SNP [dm3] 3L_4659173_SNP [dm6]	C	G	1.252e^-4	0.984	INTRON axo
3L	4659206	3L_4659206_SNP [dm3] 3L_4659206_SNP [dm6]	G	T	1.253e^-4	0.984	INTRON axo
3R	6245712	3R_6245712_SNP [dm3] 3R_10419990_SNP [dm6]	T	G	1.254e^-4	0.984	INTERGENIC
3R	6590888	3R_6590888_SNP [dm3] 3R_10765166_SNP [dm6]	A	G	1.256e^-4	0.984	NON_SYNONYMOUS_CODING Cap-H2
2R	18624251	2R_18624251_SNP [dm3] 2R_22736746_SNP [dm6]	A	G	1.263e^-4	0.984	SYNONYMOUS_CODING jbug
3L	1564687	3L_1564687_SNP [dm3] 3L_1564687_SNP [dm6]	T	A	1.264e^-4	0.984	UPSTREAM CG12003 INTRON CG7879
3L	11590795	3L_11590795_SNP [dm3] 3L_11597695_SNP [dm6]	T	C	1.274e^-4	0.984	INTRON CG7368
2R	8533527	2R_8533527_SNP [dm3] 2R_12646022_SNP [dm6]	A	T	1.278e^-4	0.984	UPSTREAM CG8785 INTRON CG8785	TF binding site mE1_TFBS_cad
X	16131469	X_16131469_SNP [dm3] X_16237436_SNP [dm6]	G	T	1.288e^-4	0.984	INTERGENIC
X	14527255	X_14527255_SNP [dm3] X_14633222_SNP [dm6]	G	A	1.292e^-4	0.984	INTRON NetA
3L	17871224	3L_17871224_SNP [dm3] 3L_17878124_SNP [dm6]	C	A	1.293e^-4	0.984	UPSTREAM CG7408 INTERGENIC
3L	17871226	3L_17871226_SNP [dm3] 3L_17878126_SNP [dm6]	T	A	1.293e^-4	0.984	UPSTREAM CG7408 INTERGENIC
3L	11590718	3L_11590718_SNP [dm3] 3L_11597618_SNP [dm6]	G	A	1.300e^-4	0.984	INTRON CG7368
3L	3003709	3L_3003709_SNP [dm3] 3L_3003709_SNP [dm6]	A	C	1.302e^-4	0.984	UTR_5_PRIME FMRFaR INTRON FMRFaR
3R	24631087	3R_24631087_SNP [dm3] 3R_28805365_SNP [dm6]	T	G	1.305e^-4	0.984	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	22387518	3L_22387518_SNP [dm3] 3L_22394418_SNP [dm6]	A	T	1.308e^-4	0.984	INTRON Ten-m	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	22531202	3R_22531202_SNP [dm3] 3R_26705480_SNP [dm6]	T	C	1.314e^-4	0.984	INTRON amon
3R	22531210	3R_22531210_SNP [dm3] 3R_26705488_SNP [dm6]	A	C	1.314e^-4	0.984	INTRON amon
3L	7630052	3L_7630052_SNP [dm3] 3L_7636952_SNP [dm6]	C	T	1.319e^-4	0.984	SYNONYMOUS_CODING CG33275
X	2579429	X_2579429_SNP [dm3] X_2685396_SNP [dm6]	G	A	1.320e^-4	0.984	UPSTREAM per INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	5689198	2R_5689198_SNP [dm3] 2R_9801693_SNP [dm6]	G	T	1.320e^-4	0.984	INTRON CG1688
3L	13297851	3L_13297851_SNP [dm3] 3L_13304751_SNP [dm6]	A	G	1.322e^-4	0.984	DOWNSTREAM CR44555 INTERGENIC
3L	8752611	3L_8752611_SNP [dm3] 3L_8759511_SNP [dm6]	C	T	1.337e^-4	0.984	SYNONYMOUS_CODING Fhos
3L	8760238	3L_8760238_SNP [dm3] 3L_8767138_SNP [dm6]	G	C	1.337e^-4	0.984	INTRON Fhos	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	8760309	3L_8760309_SNP [dm3] 3L_8767209_SNP [dm6]	C	A	1.337e^-4	0.984	INTRON Fhos	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	8760421	3L_8760421_SNP [dm3] 3L_8767321_SNP [dm6]	G	A	1.337e^-4	0.984	INTRON Fhos	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	17882620	3L_17882620_SNP [dm3] 3L_17889520_SNP [dm6]	T	A	1.342e^-4	0.984	SPLICE_SITE_REGION CG7402 INTRON CG7402
3L	16962377	3L_16962377_SNP [dm3] 3L_16969277_SNP [dm6]	T	A	1.355e^-4	0.984	UPSTREAM Exn DOWNSTREAM Nc73EF INTERGENIC
X	5828165	X_5828165_SNP [dm3] X_5934132_SNP [dm6]	G	A	1.360e^-4	0.984	INTRON CG3726
X	5828329	X_5828329_SNP [dm3] X_5934296_SNP [dm6]	C	T	1.360e^-4	0.984	INTRON CG3726
2R	3690984	2R_3690984_INS [dm3] 2R_7803479_INS [dm6]	T	TTATATTACAGA...	1.363e^-4	0.984	INTRON Nop17l	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2R	3690990	2R_3690990_DEL [dm3] 2R_7803485_DEL [dm6]	ATAT	A	1.363e^-4	0.984	INTRON Nop17l	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3L	8761259	3L_8761259_SNP [dm3] 3L_8768159_SNP [dm6]	A	G	1.363e^-4	0.984	INTRON Fhos
X	5827053	X_5827053_DEL [dm3] X_5933020_DEL [dm6]	AACAAAAA	A	1.377e^-4	0.984	INTRON CG3726
3L	5430371	3L_5430371_SNP [dm3] 3L_5437271_SNP [dm6]	A	G	1.389e^-4	0.984	INTRON CG34391
2R	8563506	2R_8563506_SNP [dm3] 2R_12676001_SNP [dm6]	C	G	1.395e^-4	0.984	UPSTREAM CG42708 INTRON CG42708	TF binding site mE1_TFBS_inv
2R	8836210	2R_8836210_SNP [dm3] 2R_12948705_SNP [dm6]	A	C	1.395e^-4	0.984	SYNONYMOUS_CODING CG44251	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4659296	3L_4659296_SNP [dm3] 3L_4659296_SNP [dm6]	T	C	1.395e^-4	0.984	INTRON axo
3L	4659302	3L_4659302_SNP [dm3] 3L_4659302_SNP [dm6]	A	G	1.395e^-4	0.984	INTRON axo
3L	4659304	3L_4659304_SNP [dm3] 3L_4659304_SNP [dm6]	A	T	1.395e^-4	0.984	INTRON axo
3R	10568658	3R_10568658_SNP [dm3] 3R_14742936_SNP [dm6]	C	T	1.404e^-4	0.984	INTRON jvl	TF binding site BDTNP1_TFBS_dl
3R	17211349	3R_17211349_SNP [dm3] 3R_21385627_SNP [dm6]	C	G	1.406e^-4	0.984	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	15301763	3L_15301763_SNP [dm3] 3L_15308663_SNP [dm6]	G	A	1.406e^-4	0.984	SYNONYMOUS_CODING CG7255
3L	11664344	3L_11664344_SNP [dm3] 3L_11671244_SNP [dm6]	T	A	1.407e^-4	0.984	INTRON CG32085
2L	7637896	2L_7637896_SNP [dm3] 2L_7637896_SNP [dm6]	G	A	1.420e^-4	0.984	DOWNSTREAM CR44800 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	4201928	3R_4201928_SNP [dm3] 3R_8376206_SNP [dm6]	T	A	1.421e^-4	0.984	INTRON CG45263
3R	4201929	3R_4201929_SNP [dm3] 3R_8376207_SNP [dm6]	A	T	1.421e^-4	0.984	INTRON CG45263
3R	6590241	3R_6590241_SNP [dm3] 3R_10764519_SNP [dm6]	C	T	1.425e^-4	0.984	NON_SYNONYMOUS_CODING Cap-H2
X	6929811	X_6929811_SNP [dm3] X_7035778_SNP [dm6]	A	G	1.429e^-4	0.984	INTRON CG12541	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6929812	X_6929812_SNP [dm3] X_7035779_SNP [dm6]	G	A	1.429e^-4	0.984	INTRON CG12541	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4918390	X_4918390_SNP [dm3] X_5024357_SNP [dm6]	T	A	1.445e^-4	0.984	INTRON CR44833
2L	6603886	2L_6603886_SNP [dm3] 2L_6603886_SNP [dm6]	C	A	1.452e^-4	0.984	INTERGENIC
3L	4659280	3L_4659280_SNP [dm3] 3L_4659280_SNP [dm6]	A	G	1.461e^-4	0.984	INTRON axo
3L	4659283	3L_4659283_SNP [dm3] 3L_4659283_SNP [dm6]	A	C	1.461e^-4	0.984	INTRON axo
3L	17694706	3L_17694706_INS [dm3] 3L_17701606_INS [dm6]	AC	TTGTGTCTT	1.472e^-4	0.984	INTRON Ccn
X	4683254	X_4683254_SNP [dm3] X_4789221_SNP [dm6]	G	A	1.484e^-4	0.984	INTERGENIC
3R	17393951	3R_17393951_SNP [dm3] 3R_21568229_SNP [dm6]	A	G	1.487e^-4	0.984	SYNONYMOUS_CODING CG15498
3L	3721392	3L_3721392_SNP [dm3] 3L_3721392_SNP [dm6]	G	A	1.492e^-4	0.984	INTRON CG32264
3L	16968361	3L_16968361_SNP [dm3] 3L_16975261_SNP [dm6]	C	T	1.494e^-4	0.984	INTRON Exn	TF binding site mE1_TFBS_Kr
3L	11373488	3L_11373488_SNP [dm3] 3L_11380388_SNP [dm6]	G	A	1.505e^-4	0.984	INTERGENIC	TF binding site mE1_TFBS_cad
3R	10567761	3R_10567761_SNP [dm3] 3R_14742039_SNP [dm6]	T	C	1.513e^-4	0.984	UTR_5_PRIME jvl UPSTREAM eff	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
2L	10122055	2L_10122055_SNP [dm3] 2L_10122055_SNP [dm6]	A	C	1.514e^-4	0.984	DOWNSTREAM CG13135 INTRON CG44153 & 1 other
2R	12170506	2R_12170506_SNP [dm3] 2R_16283001_SNP [dm6]	T	G	1.516e^-4	0.984	UPSTREAM CG9068 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2R	14755147	2R_14755147_SNP [dm3] 2R_18867642_SNP [dm6]	C	G	1.528e^-4	0.984	NON_SYNONYMOUS_CODING DptB DOWNSTREAM CG43109
3R	6245557	3R_6245557_SNP [dm3] 3R_10419835_SNP [dm6]	C	T	1.543e^-4	0.984	INTERGENIC
2R	8562576	2R_8562576_SNP [dm3] 2R_12675071_SNP [dm6]	A	T	1.549e^-4	0.984	SYNONYMOUS_CODING CG42708 UPSTREAM CG42708 INTRON CG42708
3L	9563885	3L_9563885_SNP [dm3] 3L_9570785_SNP [dm6]	G	A	1.556e^-4	0.984	INTRON CG42673
3L	21943539	3L_21943539_SNP [dm3] 3L_21950439_SNP [dm6]	C	T	1.563e^-4	0.984	DOWNSTREAM CG14562 INTRON CG7448
X	8247205	X_8247205_SNP [dm3] X_8353172_SNP [dm6]	T	C	1.569e^-4	0.984	INTRON nAChRalpha3
X	8247211	X_8247211_SNP [dm3] X_8353178_SNP [dm6]	T	C	1.569e^-4	0.984	INTRON nAChRalpha3
3L	4659310	3L_4659310_SNP [dm3] 3L_4659310_SNP [dm6]	G	A	1.588e^-4	0.984	INTRON axo
3R	6906223	3R_6906223_SNP [dm3] 3R_11080501_SNP [dm6]	A	C	1.604e^-4	0.984	INTERGENIC
X	2959339	X_2959339_SNP [dm3] X_3065306_SNP [dm6]	C	T	1.607e^-4	0.984	INTRON kirre
2L	3387871	2L_3387871_SNP [dm3] 2L_3387871_SNP [dm6]	A	C	1.617e^-4	0.984	UPSTREAM CR45301 & 1 other DOWNSTREAM CG42460 INTERGENIC
X	2579441	X_2579441_SNP [dm3] X_2685408_SNP [dm6]	C	T	1.621e^-4	0.984	UPSTREAM per INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	15681002	3L_15681002_SNP [dm3] 3L_15687902_SNP [dm6]	C	G	1.639e^-4	0.984	UTR_5_PRIME CG34452 UPSTREAM CG34452 DOWNSTREAM CG34451	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_twi
2L	17636168	2L_17636168_SNP [dm3] 2L_17636168_SNP [dm6]	G	A	1.655e^-4	0.984	INTERGENIC
2R	20518050	2R_20518050_SNP [dm3] 2R_24630527_SNP [dm6]	A	T	1.658e^-4	0.984	UPSTREAM Cyp9c1 DOWNSTREAM CR43787 INTRON CG13594
2R	7573012	2R_7573012_SNP [dm3] 2R_11685507_SNP [dm6]	C	T	1.664e^-4	0.984	SYNONYMOUS_CODING CG13196 INTRON Buffy	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8628847	3L_8628847_SNP [dm3] 3L_8635747_SNP [dm6]	T	G	1.664e^-4	0.984	SYNONYMOUS_CODING Zasp66 INTRON Zasp66
3L	8764226	3L_8764226_SNP [dm3] 3L_8771126_SNP [dm6]	G	A	1.665e^-4	0.984	INTRON Fhos
2R	19323787	2R_19323787_SNP [dm3] 2R_23436264_SNP [dm6]	T	C	1.665e^-4	0.984	INTERGENIC
2R	19323791	2R_19323791_SNP [dm3] 2R_23436268_SNP [dm6]	A	T	1.665e^-4	0.984	INTERGENIC
2R	19323793	2R_19323793_SNP [dm3] 2R_23436270_SNP [dm6]	G	A	1.665e^-4	0.984	INTERGENIC
2R	19323799	2R_19323799_SNP [dm3] 2R_23436276_SNP [dm6]	G	C	1.665e^-4	0.984	INTERGENIC
2R	19323800	2R_19323800_SNP [dm3] 2R_23436277_SNP [dm6]	G	A	1.665e^-4	0.984	INTERGENIC
2L	19580071	2L_19580071_SNP [dm3] 2L_19580071_SNP [dm6]	C	A	1.666e^-4	0.984	NON_SYNONYMOUS_CODING CG10268 DOWNSTREAM msb1l & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7631661	2L_7631661_SNP [dm3] 2L_7631661_SNP [dm6]	T	C	1.670e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_hb
3L	21822168	3L_21822168_SNP [dm3] 3L_21829068_SNP [dm6]	G	A	1.670e^-4	0.984	UPSTREAM CG32448 DOWNSTREAM CR43309 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3R	22519220	3R_22519220_SNP [dm3] 3R_26693498_SNP [dm6]	T	C	1.672e^-4	0.984	INTRON TwdlQ
3R	22526123	3R_22526123_SNP [dm3] 3R_26700401_SNP [dm6]	A	T	1.672e^-4	0.984	INTRON amon
3R	22526519	3R_22526519_SNP [dm3] 3R_26700797_SNP [dm6]	C	T	1.672e^-4	0.984	INTRON amon
3R	22529391	3R_22529391_SNP [dm3] 3R_26703669_SNP [dm6]	C	G	1.672e^-4	0.984	INTRON amon
3R	6098623	3R_6098623_SNP [dm3] 3R_10272901_SNP [dm6]	A	C	1.696e^-4	0.984	INTRON CG43143
2R	9334817	2R_9334817_SNP [dm3] 2R_13447312_SNP [dm6]	A	T	1.734e^-4	0.984	UTR_5_PRIME cnn INTRON cnn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8563593	2R_8563593_SNP [dm3] 2R_12676088_SNP [dm6]	A	G	1.737e^-4	0.984	UPSTREAM CG42708 INTRON CG42708	TF binding site mE1_TFBS_inv
3L	7814988	3L_7814988_SNP [dm3] 3L_7821888_SNP [dm6]	T	C	1.740e^-4	0.984	INTRON Pdp1
X	4683270	X_4683270_SNP [dm3] X_4789237_SNP [dm6]	A	G	1.753e^-4	0.984	INTERGENIC
3L	12847395	3L_12847395_SNP [dm3] 3L_12854295_SNP [dm6]	C	A	1.754e^-4	0.984	INTRON Ent3
2R	17139640	2R_17139640_SNP [dm3] 2R_21252135_SNP [dm6]	C	T	1.756e^-4	0.984	UPSTREAM ASPP INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1
3R	10801760	3R_10801760_SNP [dm3] 3R_14976038_SNP [dm6]	A	G	1.759e^-4	0.984	INTERGENIC
2R	12060360	2R_12060360_SNP [dm3] 2R_16172855_SNP [dm6]	A	G	1.769e^-4	0.984	SYNONYMOUS_CODING Ptp52F	TF binding site mE1_TFBS_cad
2R	9238112	2R_9238112_SNP [dm3] 2R_13350607_SNP [dm6]	C	T	1.770e^-4	0.984	INTRON CR44206
3L	21222505	3L_21222505_SNP [dm3] 3L_21229405_SNP [dm6]	T	C	1.771e^-4	0.984	INTRON Eip78C
2L	5790652	2L_5790652_SNP [dm3] 2L_5790652_SNP [dm6]	T	C	1.777e^-4	0.984	INTRON CG9171	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	10010520	2L_10010520_DEL [dm3] 2L_10010520_DEL [dm6]	AAGA	A	1.780e^-4	0.984	INTRON Trp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	21831575	3L_21831575_SNP [dm3] 3L_21838475_SNP [dm6]	G	T	1.787e^-4	0.984	INTRON P5CDh1
2R	12142434	2R_12142434_SNP [dm3] 2R_16254929_SNP [dm6]	G	T	1.791e^-4	0.984	INTRON CngA
2R	17730876	2R_17730876_SNP [dm3] 2R_21843371_SNP [dm6]	C	G	1.806e^-4	0.984	UPSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17730893	2R_17730893_SNP [dm3] 2R_21843388_SNP [dm6]	T	A	1.806e^-4	0.984	UPSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	6591067	3R_6591067_SNP [dm3] 3R_10765345_SNP [dm6]	C	A	1.811e^-4	0.984	NON_SYNONYMOUS_CODING Cap-H2
2L	9891324	2L_9891324_SNP [dm3] 2L_9891324_SNP [dm6]	C	A	1.811e^-4	0.984	UTR_3_PRIME mtDNA-helicase & 1 other UPSTREAM CG34183	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5625341	2R_5625341_SNP [dm3] 2R_9737836_SNP [dm6]	C	G	1.823e^-4	0.984	INTRON sqa
2R	5625598	2R_5625598_SNP [dm3] 2R_9738093_SNP [dm6]	C	T	1.823e^-4	0.984	INTRON sqa
2R	5625633	2R_5625633_SNP [dm3] 2R_9738128_SNP [dm6]	G	C	1.823e^-4	0.984	INTRON sqa
3L	17251131	3L_17251131_SNP [dm3] 3L_17258031_SNP [dm6]	A	G	1.848e^-4	0.984	INTRON CR43870
3L	8673489	3L_8673489_SNP [dm3] 3L_8680389_SNP [dm6]	A	G	1.857e^-4	0.984	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	8764229	3L_8764229_SNP [dm3] 3L_8771129_SNP [dm6]	C	G	1.861e^-4	0.984	INTRON Fhos
3R	22531171	3R_22531171_SNP [dm3] 3R_26705449_SNP [dm6]	A	G	1.868e^-4	0.984	INTRON amon
3L	19180226	3L_19180226_SNP [dm3] 3L_19187126_SNP [dm6]	G	T	1.871e^-4	0.984	INTRON fz2
2R	13015014	2R_13015014_SNP [dm3] 2R_17127509_SNP [dm6]	C	G	1.878e^-4	0.984	UPSTREAM CG15605 & 1 other INTERGENIC
2L	5377325	2L_5377325_SNP [dm3] 2L_5377325_SNP [dm6]	A	G	1.894e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22531201	3R_22531201_SNP [dm3] 3R_26705479_SNP [dm6]	T	A	1.896e^-4	0.984	INTRON amon
3L	17882594	3L_17882594_SNP [dm3] 3L_17889494_SNP [dm6]	T	A	1.911e^-4	0.984	INTRON CG7402
3R	11475990	3R_11475990_INS [dm3] 3R_15650268_INS [dm6]	C	CT	1.913e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7916699	2L_7916699_SNP [dm3] 2L_7916699_SNP [dm6]	C	A	1.921e^-4	0.984	INTRON Snoo
3L	11590741	3L_11590741_SNP [dm3] 3L_11597641_SNP [dm6]	A	C	1.929e^-4	0.984	INTRON CG7368
2L	6983696	2L_6983696_SNP [dm3] 2L_6983696_SNP [dm6]	G	A	1.931e^-4	0.984	SYNONYMOUS_CODING uif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17882575	3L_17882575_SNP [dm3] 3L_17889475_SNP [dm6]	T	C	1.947e^-4	0.984	INTRON CG7402
2R	7572770	2R_7572770_SNP [dm3] 2R_11685265_SNP [dm6]	C	G	1.958e^-4	0.984	NON_SYNONYMOUS_CODING CG13196 INTRON Buffy	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	11383403	3L_11383403_SNP [dm3] 3L_11390303_SNP [dm6]	A	G	1.962e^-4	0.984	INTERGENIC
3L	19034475	3L_19034475_SNP [dm3] 3L_19041375_SNP [dm6]	T	C	1.963e^-4	0.984	INTRON nkd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17843189	3L_17843189_SNP [dm3] 3L_17850089_SNP [dm6]	C	A	1.963e^-4	0.984	SYNONYMOUS_CODING CG7441 DOWNSTREAM CG7430	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	10768681	X_10768681_SNP [dm3] X_10874648_SNP [dm6]	G	A	1.966e^-4	0.984	SYNONYMOUS_CODING CG1637 INTRON CG1637	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7118175	X_7118175_DEL [dm3] X_7224142_DEL [dm6]	AA	A	1.971e^-4	0.984	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18807948	3L_18807948_SNP [dm3] 3L_18814848_SNP [dm6]	A	T	1.973e^-4	0.984	INTRON CG14073	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
2R	9662009	2R_9662009_SNP [dm3] 2R_13774504_SNP [dm6]	A	G	1.976e^-4	0.984	SYNONYMOUS_CODING Cpr50Ca	TF binding site mE1_TFBS_chinmo
X	4433154	X_4433154_SNP [dm3] X_4539121_SNP [dm6]	C	T	1.985e^-4	0.984	SYNONYMOUS_CODING rb INTRON CR32773	TF binding site mE1_TFBS_sens
2L	16394582	2L_16394582_SNP [dm3] 2L_16394582_SNP [dm6]	C	T	1.988e^-4	0.984	INTERGENIC
3L	5000443	3L_5000443_SNP [dm3] 3L_5000443_SNP [dm6]	A	G	1.999e^-4	0.984	INTRON Con	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6903905	3R_6903905_SNP [dm3] 3R_11078183_SNP [dm6]	G	C	2.008e^-4	0.984	INTERGENIC
3R	18403675	3R_18403675_SNP [dm3] 3R_22577953_SNP [dm6]	A	C	2.026e^-4	0.984	INTRON CG33110
X	3485331	X_3485331_SNP [dm3] X_3591298_SNP [dm6]	C	T	2.028e^-4	0.984	INTRON AstA-R1
3R	14449297	3R_14449297_SNP [dm3] 3R_18623575_SNP [dm6]	G	C	2.030e^-4	0.984	INTRON qin
3L	20791671	3L_20791671_SNP [dm3] 3L_20798571_SNP [dm6]	T	A	2.042e^-4	0.984	UPSTREAM CG4365 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	3485251	X_3485251_SNP [dm3] X_3591218_SNP [dm6]	T	C	2.043e^-4	0.984	INTRON AstA-R1
3R	22532600	3R_22532600_SNP [dm3] 3R_26706878_SNP [dm6]	C	T	2.070e^-4	0.984	INTRON amon
X	2791526	X_2791526_SNP [dm3] X_2897493_SNP [dm6]	T	A	2.071e^-4	0.984	INTRON kirre
3L	4695266	3L_4695266_SNP [dm3] 3L_4695266_SNP [dm6]	A	G	2.085e^-4	0.984	UPSTREAM CG15876 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17951754	3L_17951754_SNP [dm3] 3L_17958654_SNP [dm6]	A	G	2.086e^-4	0.984	INTRON Eip75B
2R	14413605	2R_14413605_SNP [dm3] 2R_18526100_SNP [dm6]	A	C	2.101e^-4	0.984	UTR_3_PRIME CG43066 DOWNSTREAM CG43066
3L	9384765	3L_9384765_SNP [dm3] 3L_9391665_SNP [dm6]	T	G	2.101e^-4	0.984	INTRON CG4080	TF binding site BDTNP1_TFBS_dl
2R	6343862	2R_6343862_INS [dm3] 2R_10456357_INS [dm6]	A	ACCCCC	2.103e^-4	0.984	INTRON Galphao & 1 other	TF binding site mE1_TFBS_inv
2R	6343863	2R_6343863_SNP [dm3] 2R_10456358_SNP [dm6]	T	C	2.103e^-4	0.984	INTRON Galphao & 1 other	TF binding site mE1_TFBS_inv
3L	8145901	3L_8145901_DEL [dm3] 3L_8152801_DEL [dm6]	TT	T	2.115e^-4	0.984	UPSTREAM CG13676 INTERGENIC
2L	2882522	2L_2882522_SNP [dm3] 2L_2882522_SNP [dm6]	G	A	2.125e^-4	0.984	SYNONYMOUS_CODING NTPase INTRON NTPase	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17903500	2R_17903500_SNP [dm3] 2R_22015995_SNP [dm6]	G	C	2.130e^-4	0.984	INTRON CG34370
3L	21857908	3L_21857908_SNP [dm3] 3L_21864808_SNP [dm6]	C	A	2.131e^-4	0.984	INTRON mub
2L	6030009	2L_6030009_SNP [dm3] 2L_6030009_SNP [dm6]	T	G	2.141e^-4	0.984	INTRON CG9109
X	8113500	X_8113500_SNP [dm3] X_8219467_SNP [dm6]	T	A	2.160e^-4	0.984	INTRON sdt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	2786342	2L_2786342_SNP [dm3] 2L_2786342_SNP [dm6]	T	G	2.163e^-4	0.984	INTRON Syt1
3L	1634046	3L_1634046_SNP [dm3] 3L_1634046_SNP [dm6]	G	A	2.166e^-4	0.984	INTRON nSyb	TF binding site mE1_TFBS_cad
2R	7426261	2R_7426261_INS [dm3] 2R_11538756_INS [dm6]	T	TGGT	2.168e^-4	0.984	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	14876233	3R_14876233_SNP [dm3] 3R_19050511_SNP [dm6]	C	T	2.171e^-4	0.984	INTRON cdi
3L	9848671	3L_9848671_SNP [dm3] 3L_9855571_SNP [dm6]	T	G	2.186e^-4	0.984	UPSTREAM RasGAP1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3L	9848712	3L_9848712_DEL [dm3] 3L_9855612_DEL [dm6]	TTTT	T	2.186e^-4	0.984	UPSTREAM RasGAP1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3L	9848773	3L_9848773_SNP [dm3] 3L_9855673_SNP [dm6]	C	T	2.186e^-4	0.984	UPSTREAM RasGAP1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3L	17785829	3L_17785829_SNP [dm3] 3L_17792729_SNP [dm6]	A	G	2.192e^-4	0.984	SYNONYMOUS_CODING CG42816
3L	22198784	3L_22198784_SNP [dm3] 3L_22205684_SNP [dm6]	A	G	2.204e^-4	0.984	INTRON olf413	TF binding site mE1_TFBS_HSA
2R	8845652	2R_8845652_SNP [dm3] 2R_12958147_SNP [dm6]	A	T	2.207e^-4	0.984	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2659386	3L_2659386_SNP [dm3] 3L_2659386_SNP [dm6]	T	G	2.210e^-4	0.984	UPSTREAM CG33233 INTRON Fife	TF binding site mE1_TFBS_chinmo
2R	3690989	2R_3690989_SNP [dm3] 2R_7803484_SNP [dm6]	A	C	2.213e^-4	0.984	INTRON Nop17l	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
X	18052104	X_18052104_SNP [dm3] X_18158071_SNP [dm6]	G	A	2.218e^-4	0.984	INTRON Frq1
2R	7573275	2R_7573275_DEL [dm3] 2R_11685770_DEL [dm6]	CTGGAAC	C	2.230e^-4	0.984	CODON_DELETION CG13196 INTRON Buffy	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17086616	2R_17086616_SNP [dm3] 2R_21199111_SNP [dm6]	C	T	2.237e^-4	0.984	SYNONYMOUS_CODING Lapsyn
2R	17087274	2R_17087274_SNP [dm3] 2R_21199769_SNP [dm6]	G	A	2.237e^-4	0.984	UPSTREAM Glycogenin & 1 other DOWNSTREAM Lapsyn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	6279082	3R_6279082_SNP [dm3] 3R_10453360_SNP [dm6]	A	G	2.241e^-4	0.984	INTERGENIC
3R	6279105	3R_6279105_SNP [dm3] 3R_10453383_SNP [dm6]	A	G	2.241e^-4	0.984	INTERGENIC
2L	3878199	2L_3878199_SNP [dm3] 2L_3878199_SNP [dm6]	A	G	2.247e^-4	0.984	INTRON capu
3L	9848743	3L_9848743_SNP [dm3] 3L_9855643_SNP [dm6]	T	C	2.266e^-4	0.984	UPSTREAM RasGAP1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2R	1660853	2R_1660853_SNP [dm3] 2R_5773348_SNP [dm6]	T	C	2.274e^-4	0.984	UTR_3_PRIME Gp210 DOWNSTREAM Gp210	TF binding site BDTNP1_TFBS_dl
2L	5627942	2L_5627942_SNP [dm3] 2L_5627942_SNP [dm6]	C	A	2.287e^-4	0.984	INTRON CG31646
3L	1957981	3L_1957981_SNP [dm3] 3L_1957981_SNP [dm6]	T	C	2.310e^-4	0.984	INTRON mv	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1957982	3L_1957982_SNP [dm3] 3L_1957982_SNP [dm6]	A	C	2.310e^-4	0.984	INTRON mv	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10262661	3R_10262661_SNP [dm3] 3R_14436939_SNP [dm6]	C	A	2.324e^-4	0.984	INTRON cv-c
3L	9487925	3L_9487925_SNP [dm3] 3L_9494825_SNP [dm6]	T	G	2.335e^-4	0.984	UTR_3_PRIME path
3L	9487963	3L_9487963_SNP [dm3] 3L_9494863_SNP [dm6]	A	T	2.335e^-4	0.984	UTR_3_PRIME path
3L	9487974	3L_9487974_SNP [dm3] 3L_9494874_SNP [dm6]	C	G	2.335e^-4	0.984	UTR_3_PRIME path
3L	17882595	3L_17882595_SNP [dm3] 3L_17889495_SNP [dm6]	C	T	2.344e^-4	0.984	INTRON CG7402
2L	12959894	2L_12959894_SNP [dm3] 2L_12959894_SNP [dm6]	A	G	2.348e^-4	0.984	INTERGENIC
3L	3557183	3L_3557183_SNP [dm3] 3L_3557183_SNP [dm6]	G	A	2.371e^-4	0.984	INTRON Eip63E
3R	21448990	3R_21448990_SNP [dm3] 3R_25623268_SNP [dm6]	G	C	2.374e^-4	0.984	SYNONYMOUS_CODING Npl4	TF binding site mE1_TFBS_sens
X	3540408	X_3540408_SNP [dm3] X_3646375_SNP [dm6]	T	A	2.392e^-4	0.984	INTRON AstA-R1
3R	22520353	3R_22520353_SNP [dm3] 3R_26694631_SNP [dm6]	G	T	2.400e^-4	0.984	INTERGENIC
3R	22520378	3R_22520378_SNP [dm3] 3R_26694656_SNP [dm6]	T	C	2.400e^-4	0.984	INTERGENIC
3R	22520703	3R_22520703_SNP [dm3] 3R_26694981_SNP [dm6]	G	A	2.400e^-4	0.984	INTERGENIC
3R	22524063	3R_22524063_SNP [dm3] 3R_26698341_SNP [dm6]	G	T	2.400e^-4	0.984	UTR_3_PRIME amon
3R	22524070	3R_22524070_SNP [dm3] 3R_26698348_SNP [dm6]	T	A	2.400e^-4	0.984	UTR_3_PRIME amon
3R	22527153	3R_22527153_SNP [dm3] 3R_26701431_SNP [dm6]	A	G	2.400e^-4	0.984	INTRON amon
3R	22527474	3R_22527474_SNP [dm3] 3R_26701752_SNP [dm6]	C	T	2.400e^-4	0.984	INTRON amon
3R	22528250	3R_22528250_SNP [dm3] 3R_26702528_SNP [dm6]	C	T	2.400e^-4	0.984	INTRON amon	TF binding site mE1_TFBS_chinmo
3R	22529842	3R_22529842_SNP [dm3] 3R_26704120_SNP [dm6]	A	G	2.400e^-4	0.984	INTRON amon
3R	22530615	3R_22530615_SNP [dm3] 3R_26704893_SNP [dm6]	G	T	2.400e^-4	0.984	INTRON amon
3R	22530998	3R_22530998_SNP [dm3] 3R_26705276_SNP [dm6]	C	A	2.400e^-4	0.984	INTRON amon
3R	22531147	3R_22531147_SNP [dm3] 3R_26705425_SNP [dm6]	C	A	2.400e^-4	0.984	INTRON amon
3R	22532962	3R_22532962_SNP [dm3] 3R_26707240_SNP [dm6]	C	T	2.400e^-4	0.984	INTRON amon	TF binding site mE1_TFBS_ftz_f1
3L	21853606	3L_21853606_SNP [dm3] 3L_21860506_SNP [dm6]	G	A	2.405e^-4	0.984	INTRON mub	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	21864507	3L_21864507_SNP [dm3] 3L_21871407_SNP [dm6]	G	A	2.405e^-4	0.984	INTRON mub	TF binding site mE1_TFBS_cad
3L	21918016	3L_21918016_SNP [dm3] 3L_21924916_SNP [dm6]	C	A	2.405e^-4	0.984	DOWNSTREAM mub INTRON mub
2R	3238609	2R_3238609_MNP [dm3] 2R_7351104_MNP [dm6]	GTC	TGG	2.418e^-4	0.984	INTRON Dscam1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	8765198	3L_8765198_SNP [dm3] 3L_8772098_SNP [dm6]	T	C	2.430e^-4	0.984	INTRON Fhos
3R	19012365	3R_19012365_SNP [dm3] 3R_23186643_SNP [dm6]	A	T	2.436e^-4	0.984	UTR_3_PRIME cnc
2R	14366456	2R_14366456_SNP [dm3] 2R_18478951_SNP [dm6]	G	A	2.439e^-4	0.984	INTRON CG30116
2R	14366849	2R_14366849_SNP [dm3] 2R_18479344_SNP [dm6]	C	A	2.449e^-4	0.984	INTRON CG30116
2R	10949856	2R_10949856_SNP [dm3] 2R_15062351_SNP [dm6]	T	C	2.452e^-4	0.984	INTERGENIC
2R	20113973	2R_20113973_SNP [dm3] 2R_24226450_SNP [dm6]	T	C	2.457e^-4	0.984	INTRON CG30419
2L	16338416	2L_16338416_SNP [dm3] 2L_16338416_SNP [dm6]	G	A	2.467e^-4	0.984	SYNONYMOUS_CODING CG42266 UPSTREAM CG31817	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22519311	3R_22519311_SNP [dm3] 3R_26693589_SNP [dm6]	C	A	2.473e^-4	0.984	UTR_5_PRIME TwdlQ
X	10768740	X_10768740_SNP [dm3] X_10874707_SNP [dm6]	T	C	2.482e^-4	0.984	NON_SYNONYMOUS_CODING CG1637 INTRON CG1637	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	10769399	X_10769399_SNP [dm3] X_10875366_SNP [dm6]	C	A	2.482e^-4	0.984	SYNONYMOUS_CODING CG1637 INTRON CG1637	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25138699	3R_25138699_SNP [dm3] 3R_29312977_SNP [dm6]	G	T	2.503e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	8944185	2R_8944185_SNP [dm3] 2R_13056680_SNP [dm6]	G	A	2.507e^-4	0.984	UTR_3_PRIME Drl-2
2R	17027151	2R_17027151_SNP [dm3] 2R_21139646_SNP [dm6]	T	A	2.528e^-4	0.984	UTR_5_PRIME Magi INTRON Magi
X	17325410	X_17325410_SNP [dm3] X_17431377_SNP [dm6]	A	G	2.539e^-4	0.984	INTRON CG12994
3L	21843147	3L_21843147_SNP [dm3] 3L_21850047_SNP [dm6]	A	T	2.547e^-4	0.984	INTRON mub
2R	19323802	2R_19323802_MNP [dm3] 2R_23436279_MNP [dm6]	GCG	CAT	2.551e^-4	0.984	INTERGENIC
3R	12433778	3R_12433778_SNP [dm3] 3R_16608056_SNP [dm6]	A	T	2.561e^-4	0.984	INTERGENIC
2R	10949898	2R_10949898_SNP [dm3] 2R_15062393_SNP [dm6]	A	C	2.571e^-4	0.984	INTERGENIC
3R	22520386	3R_22520386_SNP [dm3] 3R_26694664_SNP [dm6]	T	C	2.581e^-4	0.984	INTERGENIC
X	12722108	X_12722108_SNP [dm3] X_12828075_SNP [dm6]	A	T	2.583e^-4	0.984	INTRON Pde9
3L	11590649	3L_11590649_SNP [dm3] 3L_11597549_SNP [dm6]	G	T	2.594e^-4	0.984	INTRON CG7368
3L	13271290	3L_13271290_SNP [dm3] 3L_13278190_SNP [dm6]	G	A	2.609e^-4	0.984	UTR_3_PRIME caps
3L	8588407	3L_8588407_SNP [dm3] 3L_8595307_SNP [dm6]	C	G	2.614e^-4	0.984	NON_SYNONYMOUS_CODING CG43078 UTR_3_PRIME CG43078	TF binding site mE1_TFBS_chinmo
2R	7782156	2R_7782156_SNP [dm3] 2R_11894651_SNP [dm6]	C	A	2.615e^-4	0.984	SYNONYMOUS_CODING Ef1alpha48D	TF binding site mE1_TFBS_sens
X	10776800	X_10776800_SNP [dm3] X_10882767_SNP [dm6]	G	T	2.619e^-4	0.984	INTRON Ork1
X	2844257	X_2844257_SNP [dm3] X_2950224_SNP [dm6]	C	G	2.623e^-4	0.984	DOWNSTREAM rst INTRON kirre
3L	17842126	3L_17842126_SNP [dm3] 3L_17849026_SNP [dm6]	T	C	2.628e^-4	0.984	UPSTREAM CG7441 INTRON CG7430	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4659764	2L_4659764_SNP [dm3] 2L_4659764_SNP [dm6]	C	T	2.632e^-4	0.984	INTERGENIC
2L	11807411	2L_11807411_SNP [dm3] 2L_11807411_SNP [dm6]	C	T	2.635e^-4	0.984	INTRON crol	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	8765226	3L_8765226_SNP [dm3] 3L_8772126_SNP [dm6]	C	A	2.637e^-4	0.984	INTRON Fhos
2R	5687931	2R_5687931_SNP [dm3] 2R_9800426_SNP [dm6]	C	G	2.647e^-4	0.984	INTRON CG1688
3L	8758436	3L_8758436_SNP [dm3] 3L_8765336_SNP [dm6]	G	A	2.658e^-4	0.984	INTRON Fhos	TF binding site mE1_TFBS_Trl
3R	10814081	3R_10814081_INS [dm3] 3R_14988359_INS [dm6]	G	GAATGATG	2.666e^-4	0.984	INTERGENIC
2L	7633060	2L_7633060_SNP [dm3] 2L_7633060_SNP [dm6]	T	C	2.668e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	8765104	3L_8765104_SNP [dm3] 3L_8772004_SNP [dm6]	T	G	2.673e^-4	0.984	INTRON Fhos
3L	8765256	3L_8765256_SNP [dm3] 3L_8772156_SNP [dm6]	A	G	2.673e^-4	0.984	INTRON Fhos
3R	10429776	3R_10429776_SNP [dm3] 3R_14604054_SNP [dm6]	C	A	2.686e^-4	0.984	INTRON stumps
3L	8752145	3L_8752145_SNP [dm3] 3L_8759045_SNP [dm6]	G	T	2.695e^-4	0.984	INTRON Fhos
3L	8753666	3L_8753666_SNP [dm3] 3L_8760566_SNP [dm6]	T	A	2.695e^-4	0.984	NON_SYNONYMOUS_CODING Fhos UPSTREAM Fhos
3L	8753676	3L_8753676_SNP [dm3] 3L_8760576_SNP [dm6]	C	T	2.695e^-4	0.984	SYNONYMOUS_CODING Fhos UPSTREAM Fhos
3L	8753706	3L_8753706_SNP [dm3] 3L_8760606_SNP [dm6]	A	G	2.695e^-4	0.984	SYNONYMOUS_CODING Fhos UPSTREAM Fhos
3L	8753763	3L_8753763_SNP [dm3] 3L_8760663_SNP [dm6]	G	A	2.695e^-4	0.984	SYNONYMOUS_CODING Fhos UPSTREAM Fhos
3L	8756392	3L_8756392_SNP [dm3] 3L_8763292_SNP [dm6]	T	A	2.695e^-4	0.984	INTRON Fhos
3L	8756654	3L_8756654_SNP [dm3] 3L_8763554_SNP [dm6]	C	G	2.695e^-4	0.984	INTRON Fhos
3L	8757707	3L_8757707_SNP [dm3] 3L_8764607_SNP [dm6]	A	T	2.695e^-4	0.984	INTRON Fhos
3L	8757772	3L_8757772_SNP [dm3] 3L_8764672_SNP [dm6]	C	T	2.695e^-4	0.984	INTRON Fhos
3L	8758096	3L_8758096_SNP [dm3] 3L_8764996_SNP [dm6]	T	A	2.695e^-4	0.984	INTRON Fhos
3L	8758099	3L_8758099_SNP [dm3] 3L_8764999_SNP [dm6]	G	T	2.695e^-4	0.984	INTRON Fhos
3L	8759291	3L_8759291_SNP [dm3] 3L_8766191_SNP [dm6]	A	T	2.695e^-4	0.984	UPSTREAM Fhos INTRON Fhos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	8759310	3L_8759310_SNP [dm3] 3L_8766210_SNP [dm6]	A	C	2.695e^-4	0.984	UPSTREAM Fhos INTRON Fhos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	19004501	X_19004501_SNP [dm3] X_19110468_SNP [dm6]	G	C	2.707e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12991273	3L_12991273_SNP [dm3] 3L_12998173_SNP [dm6]	C	G	2.711e^-4	0.984	DOWNSTREAM CG11262 INTERGENIC
2L	11163395	2L_11163395_SNP [dm3] 2L_11163395_SNP [dm6]	A	G	2.711e^-4	0.984	SPLICE_SITE_REGION Ca-beta INTRON Ca-beta
3R	15995889	3R_15995889_SNP [dm3] 3R_20170167_SNP [dm6]	A	G	2.712e^-4	0.984	INTRON CG5023
X	2844258	X_2844258_SNP [dm3] X_2950225_SNP [dm6]	A	C	2.719e^-4	0.984	DOWNSTREAM rst INTRON kirre
3R	13895133	3R_13895133_SNP [dm3] 3R_18069411_SNP [dm6]	T	A	2.728e^-4	0.984	INTERGENIC
3L	8759399	3L_8759399_SNP [dm3] 3L_8766299_SNP [dm6]	C	A	2.735e^-4	0.984	UPSTREAM Fhos INTRON Fhos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	4679794	2L_4679794_SNP [dm3] 2L_4679794_SNP [dm6]	C	G	2.754e^-4	0.984	INTERGENIC
2L	9891615	2L_9891615_SNP [dm3] 2L_9891615_SNP [dm6]	C	T	2.761e^-4	0.984	SYNONYMOUS_CODING mtDNA-helicase UPSTREAM CG34183 DOWNSTREAM CG4537	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	2782949	2L_2782949_SNP [dm3] 2L_2782949_SNP [dm6]	A	G	2.769e^-4	0.984	INTRON Syt1
3L	11383364	3L_11383364_SNP [dm3] 3L_11390264_SNP [dm6]	G	A	2.771e^-4	0.984	INTERGENIC
2L	4148869	2L_4148869_SNP [dm3] 2L_4148869_SNP [dm6]	C	T	2.774e^-4	0.984	UPSTREAM CG2955 INTERGENIC
2L	6008353	2L_6008353_SNP [dm3] 2L_6008353_SNP [dm6]	C	A	2.775e^-4	0.984	SYNONYMOUS_CODING CG9098
3R	18081692	3R_18081692_SNP [dm3] 3R_22255970_SNP [dm6]	T	C	2.776e^-4	0.984	INTRON SKIP	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18369069	2R_18369069_SNP [dm3] 2R_22481564_SNP [dm6]	A	C	2.782e^-4	0.984	INTRON CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7982131	3L_7982131_SNP [dm3] 3L_7989031_SNP [dm6]	C	G	2.791e^-4	0.984	INTRON nmo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	9890670	2L_9890670_SNP [dm3] 2L_9890670_SNP [dm6]	A	T	2.794e^-4	0.984	UPSTREAM CG4537 DOWNSTREAM FKBP59 & 1 other INTRON CG34183	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	5626728	2R_5626728_SNP [dm3] 2R_9739223_SNP [dm6]	T	C	2.795e^-4	0.984	INTRON sqa
2R	19396871	2R_19396871_SNP [dm3] 2R_23509348_SNP [dm6]	G	C	2.804e^-4	0.984	INTERGENIC
3L	8535415	3L_8535415_SNP [dm3] 3L_8542315_SNP [dm6]	G	A	2.825e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16338419	2L_16338419_SNP [dm3] 2L_16338419_SNP [dm6]	A	T	2.826e^-4	0.984	SYNONYMOUS_CODING CG42266 UPSTREAM CG31817	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17903513	2R_17903513_SNP [dm3] 2R_22016008_SNP [dm6]	T	C	2.827e^-4	0.984	INTRON CG34370
3R	18419818	3R_18419818_SNP [dm3] 3R_22594096_SNP [dm6]	T	C	2.832e^-4	0.984	INTRON Efa6	TF binding site mE1_TFBS_chinmo
3L	8535513	3L_8535513_INS [dm3] 3L_8542413_INS [dm6]	T	TC	2.834e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8535532	3L_8535532_SNP [dm3] 3L_8542432_SNP [dm6]	C	T	2.834e^-4	0.984	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	4074433	2R_4074433_SNP [dm3] 2R_8186928_SNP [dm6]	C	G	2.866e^-4	0.984	NON_SYNONYMOUS_CODING LRP1 INTRON LRP1
3R	9682343	3R_9682343_SNP [dm3] 3R_13856621_SNP [dm6]	T	A	2.895e^-4	0.984	INTERGENIC
2L	7700275	2L_7700275_SNP [dm3] 2L_7700275_SNP [dm6]	G	A	2.896e^-4	0.984	SYNONYMOUS_CODING Tep2
2R	16618967	2R_16618967_SNP [dm3] 2R_20731462_SNP [dm6]	T	G	2.911e^-4	0.984	UPSTREAM CG13442 INTRON dpr
X	15584532	X_15584532_SNP [dm3] X_15690499_SNP [dm6]	A	T	2.912e^-4	0.984	INTRON CG43132	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16922427	2R_16922427_SNP [dm3] 2R_21034922_SNP [dm6]	C	T	2.933e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	6145337	2R_6145337_INS [dm3] 2R_10257832_INS [dm6]	C	CAC	2.936e^-4	0.984	INTRON CG12911	TF binding site mE1_TFBS_cad
3R	24879129	3R_24879129_SNP [dm3] 3R_29053407_SNP [dm6]	G	C	2.946e^-4	0.984	SYNONYMOUS_CODING CG11842 UPSTREAM CG11843	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	6028860	2L_6028860_INS [dm3] 2L_6028860_INS [dm6]	T	TTA	2.949e^-4	0.984	INTRON CG9109
3L	8754057	3L_8754057_SNP [dm3] 3L_8760957_SNP [dm6]	T	C	2.949e^-4	0.984	SYNONYMOUS_CODING Fhos UPSTREAM Fhos
3R	25801158	3R_25801158_SNP [dm3] 3R_29975436_SNP [dm6]	G	T	2.952e^-4	0.984	INTERGENIC
3L	4659308	3L_4659308_SNP [dm3] 3L_4659308_SNP [dm6]	T	A	2.952e^-4	0.984	INTRON axo
3L	1564552	3L_1564552_SNP [dm3] 3L_1564552_SNP [dm6]	G	A	2.955e^-4	0.984	UPSTREAM CG12003 INTRON CG7879
X	3613930	X_3613930_SNP [dm3] X_3719897_SNP [dm6]	T	C	2.955e^-4	0.984	UPSTREAM tlk & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_run
3L	22504193	3L_22504193_SNP [dm3] 3L_22511093_SNP [dm6]	T	C	2.966e^-4	0.984	DOWNSTREAM CR45429 INTERGENIC	TF binding site mE1_TFBS_cad
3L	22504194	3L_22504194_SNP [dm3] 3L_22511094_SNP [dm6]	C	T	2.966e^-4	0.984	DOWNSTREAM CR45429 INTERGENIC	TF binding site mE1_TFBS_cad
X	8328996	X_8328996_SNP [dm3] X_8434963_SNP [dm6]	A	G	2.967e^-4	0.984	INTRON CG12125	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	6535290	3L_6535290_SNP [dm3] 3L_6542190_SNP [dm6]	T	C	2.972e^-4	0.984	INTRON sfl	TF binding site BDTNP1_TFBS_dl
3L	6535316	3L_6535316_SNP [dm3] 3L_6542216_SNP [dm6]	T	C	2.972e^-4	0.984	INTRON sfl	TF binding site BDTNP1_TFBS_dl
3L	6535402	3L_6535402_SNP [dm3] 3L_6542302_SNP [dm6]	C	T	2.972e^-4	0.984	INTRON sfl
3L	6535404	3L_6535404_SNP [dm3] 3L_6542304_SNP [dm6]	C	A	2.972e^-4	0.984	INTRON sfl
3L	12356983	3L_12356983_SNP [dm3] 3L_12363883_SNP [dm6]	G	C	2.976e^-4	0.984	INTERGENIC
3R	4283846	3R_4283846_SNP [dm3] 3R_8458124_SNP [dm6]	G	A	2.986e^-4	0.984	INTRON CG45263
3L	17884547	3L_17884547_SNP [dm3] 3L_17891447_SNP [dm6]	A	G	3.005e^-4	0.984	DOWNSTREAM Tsp74F & 1 other INTERGENIC
X	2611629	X_2611629_SNP [dm3] X_2717596_SNP [dm6]	T	C	3.007e^-4	0.984	UTR_3_PRIME CG2694 DOWNSTREAM CG2701
2R	17903806	2R_17903806_SNP [dm3] 2R_22016301_SNP [dm6]	A	G	3.011e^-4	0.984	INTRON CG34370
X	2844275	X_2844275_SNP [dm3] X_2950242_SNP [dm6]	C	A	3.024e^-4	0.984	DOWNSTREAM rst INTRON kirre
2L	11548223	2L_11548223_SNP [dm3] 2L_11548223_SNP [dm6]	G	T	3.034e^-4	0.984	DOWNSTREAM CR44494 INTERGENIC
2L	8781605	2L_8781605_SNP [dm3] 2L_8781605_SNP [dm6]	A	G	3.035e^-4	0.984	UPSTREAM CG9468 DOWNSTREAM CG42710 INTERGENIC
X	6007635	X_6007635_SNP [dm3] X_6113602_SNP [dm6]	G	A	3.046e^-4	0.984	SYNONYMOUS_CODING Ca-alpha1T	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3694296	2L_3694296_SNP [dm3] 2L_3694296_SNP [dm6]	G	A	3.047e^-4	0.984	UPSTREAM Acp24A4 DOWNSTREAM CG43165 & 1 other INTRON CR43364
2R	14755195	2R_14755195_SNP [dm3] 2R_18867690_SNP [dm6]	G	T	3.048e^-4	0.984	SYNONYMOUS_CODING DptB DOWNSTREAM CG43109
2L	9368527	2L_9368527_SNP [dm3] 2L_9368527_SNP [dm6]	T	C	3.066e^-4	0.984	DOWNSTREAM CG34181 INTERGENIC
2R	4514524	2R_4514524_SNP [dm3] 2R_8627019_SNP [dm6]	A	G	3.071e^-4	0.984	NON_SYNONYMOUS_CODING beta3GalTII UPSTREAM CG14749 DOWNSTREAM Vps25	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
2R	9664820	2R_9664820_SNP [dm3] 2R_13777315_SNP [dm6]	A	G	3.071e^-4	0.984	DOWNSTREAM S-Lap7 INTRON Cpr50Ca
2L	959031	2L_959031_SNP [dm3] 2L_959031_SNP [dm6]	C	T	3.076e^-4	0.984	DOWNSTREAM CG4341 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	6535324	3L_6535324_SNP [dm3] 3L_6542224_SNP [dm6]	C	A	3.083e^-4	0.984	INTRON sfl	TF binding site BDTNP1_TFBS_dl
3R	6279118	3R_6279118_SNP [dm3] 3R_10453396_SNP [dm6]	G	A	3.086e^-4	0.984	INTERGENIC
3L	8759403	3L_8759403_SNP [dm3] 3L_8766303_SNP [dm6]	C	G	3.108e^-4	0.984	UPSTREAM Fhos INTRON Fhos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	14366500	2R_14366500_SNP [dm3] 2R_18478995_SNP [dm6]	T	A	3.121e^-4	0.984	INTRON CG30116
2R	14366514	2R_14366514_SNP [dm3] 2R_18479009_SNP [dm6]	A	G	3.121e^-4	0.984	INTRON CG30116
2R	16647300	2R_16647300_SNP [dm3] 2R_20759795_SNP [dm6]	G	A	3.123e^-4	0.984	INTERGENIC
2R	8908091	2R_8908091_SNP [dm3] 2R_13020586_SNP [dm6]	G	A	3.129e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	11374001	3L_11374001_SNP [dm3] 3L_11380901_SNP [dm6]	T	G	3.129e^-4	0.984	INTERGENIC
2R	5990682	2R_5990682_SNP [dm3] 2R_10103177_SNP [dm6]	G	T	3.129e^-4	0.984	UPSTREAM 14-3-3zeta INTRON 14-3-3zeta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	10820004	3R_10820004_SNP [dm3] 3R_14994282_SNP [dm6]	C	T	3.131e^-4	0.984	INTERGENIC
3L	2668595	3L_2668595_SNP [dm3] 3L_2668595_SNP [dm6]	T	G	3.141e^-4	0.984	INTRON Fife
2R	8563587	2R_8563587_SNP [dm3] 2R_12676082_SNP [dm6]	A	G	3.150e^-4	0.984	UPSTREAM CG42708 INTRON CG42708	TF binding site mE1_TFBS_inv
2R	8563592	2R_8563592_SNP [dm3] 2R_12676087_SNP [dm6]	A	G	3.150e^-4	0.984	UPSTREAM CG42708 INTRON CG42708	TF binding site mE1_TFBS_inv
3L	22198817	3L_22198817_SNP [dm3] 3L_22205717_SNP [dm6]	C	T	3.153e^-4	0.984	INTRON olf413	TF binding site mE1_TFBS_HSA
3R	24812406	3R_24812406_SNP [dm3] 3R_28986684_SNP [dm6]	T	A	3.165e^-4	0.984	INTERGENIC
2R	5990304	2R_5990304_SNP [dm3] 2R_10102799_SNP [dm6]	G	T	3.168e^-4	0.984	UPSTREAM 14-3-3zeta INTRON 14-3-3zeta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	13989580	3L_13989580_SNP [dm3] 3L_13996480_SNP [dm6]	C	T	3.168e^-4	0.984	UTR_3_PRIME 26-29-p UPSTREAM CG17361	TF binding site mE1_TFBS_cad
3L	1958065	3L_1958065_SNP [dm3] 3L_1958065_SNP [dm6]	A	T	3.169e^-4	0.984	SYNONYMOUS_CODING mv	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4659210	3L_4659210_SNP [dm3] 3L_4659210_SNP [dm6]	G	T	3.180e^-4	0.984	INTRON axo
2R	17730680	2R_17730680_SNP [dm3] 2R_21843175_SNP [dm6]	T	A	3.197e^-4	0.984	UPSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23410104	3R_23410104_SNP [dm3] 3R_27584382_SNP [dm6]	A	G	3.198e^-4	0.984	INTRON raps	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23410117	3R_23410117_SNP [dm3] 3R_27584395_SNP [dm6]	C	T	3.198e^-4	0.984	INTRON raps	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	11978780	3R_11978780_SNP [dm3] 3R_16153058_SNP [dm6]	G	T	3.253e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	1084609	3L_1084609_SNP [dm3] 3L_1084609_SNP [dm6]	A	G	3.263e^-4	0.984	INTRON bab1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	5437516	3L_5437516_SNP [dm3] 3L_5444416_SNP [dm6]	T	G	3.268e^-4	0.984	INTERGENIC
2L	4659873	2L_4659873_SNP [dm3] 2L_4659873_SNP [dm6]	A	T	3.295e^-4	0.984	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	4331156	3R_4331156_SNP [dm3] 3R_8505434_SNP [dm6]	A	G	3.309e^-4	0.984	INTERGENIC
2L	14774536	2L_14774536_SNP [dm3] 2L_14774536_SNP [dm6]	A	G	3.313e^-4	0.984	NON_SYNONYMOUS_CODING CG4650 UTR_3_PRIME CG4650
3L	8759370	3L_8759370_SNP [dm3] 3L_8766270_SNP [dm6]	T	C	3.324e^-4	0.984	UPSTREAM Fhos INTRON Fhos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	11807626	2L_11807626_SNP [dm3] 2L_11807626_SNP [dm6]	G	C	3.332e^-4	0.984	INTRON crol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	13335861	3L_13335861_SNP [dm3] 3L_13342761_SNP [dm6]	A	G	3.337e^-4	0.984	DOWNSTREAM CR44559 INTERGENIC
2R	13549720	2R_13549720_SNP [dm3] 2R_17662215_SNP [dm6]	A	C	3.349e^-4	0.984	INTRON CCHa1-R
2L	2784883	2L_2784883_SNP [dm3] 2L_2784883_SNP [dm6]	A	G	3.355e^-4	0.984	UTR_3_PRIME Syt1 INTRON Syt1
2R	17299063	2R_17299063_SNP [dm3] 2R_21411558_SNP [dm6]	A	G	3.359e^-4	0.984	INTRON Sdc
2R	16690130	2R_16690130_SNP [dm3] 2R_20802625_SNP [dm6]	A	C	3.362e^-4	0.984	INTERGENIC
2L	17576593	2L_17576593_SNP [dm3] 2L_17576593_SNP [dm6]	A	T	3.367e^-4	0.984	INTERGENIC
3L	8755197	3L_8755197_SNP [dm3] 3L_8762097_SNP [dm6]	C	A	3.376e^-4	0.984	SYNONYMOUS_CODING Fhos	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	8756429	3L_8756429_SNP [dm3] 3L_8763329_SNP [dm6]	T	C	3.376e^-4	0.984	INTRON Fhos
3L	8756459	3L_8756459_SNP [dm3] 3L_8763359_SNP [dm6]	T	A	3.376e^-4	0.984	INTRON Fhos
3L	8756461	3L_8756461_SNP [dm3] 3L_8763361_SNP [dm6]	T	C	3.376e^-4	0.984	INTRON Fhos
3L	8756462	3L_8756462_SNP [dm3] 3L_8763362_SNP [dm6]	T	A	3.376e^-4	0.984	INTRON Fhos
3L	8756484	3L_8756484_SNP [dm3] 3L_8763384_SNP [dm6]	T	C	3.376e^-4	0.984	INTRON Fhos
3L	8756485	3L_8756485_SNP [dm3] 3L_8763385_SNP [dm6]	G	T	3.376e^-4	0.984	INTRON Fhos
3L	8756498	3L_8756498_SNP [dm3] 3L_8763398_SNP [dm6]	A	G	3.376e^-4	0.984	INTRON Fhos
3L	8756512	3L_8756512_SNP [dm3] 3L_8763412_SNP [dm6]	A	T	3.376e^-4	0.984	INTRON Fhos
3L	8758245	3L_8758245_SNP [dm3] 3L_8765145_SNP [dm6]	T	A	3.376e^-4	0.984	INTRON Fhos
3L	8758246	3L_8758246_SNP [dm3] 3L_8765146_SNP [dm6]	A	T	3.376e^-4	0.984	INTRON Fhos
3L	8758817	3L_8758817_SNP [dm3] 3L_8765717_SNP [dm6]	A	G	3.376e^-4	0.984	UPSTREAM Fhos INTRON Fhos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	8759284	3L_8759284_SNP [dm3] 3L_8766184_SNP [dm6]	T	G	3.376e^-4	0.984	UPSTREAM Fhos INTRON Fhos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	8759325	3L_8759325_SNP [dm3] 3L_8766225_SNP [dm6]	A	T	3.376e^-4	0.984	UPSTREAM Fhos INTRON Fhos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	8759326	3L_8759326_SNP [dm3] 3L_8766226_SNP [dm6]	G	A	3.376e^-4	0.984	UPSTREAM Fhos INTRON Fhos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	12961931	X_12961931_SNP [dm3] X_13067898_SNP [dm6]	A	G	3.382e^-4	0.984	INTRON rad
X	12961946	X_12961946_SNP [dm3] X_13067913_SNP [dm6]	C	T	3.382e^-4	0.984	INTRON rad
2R	12295214	2R_12295214_SNP [dm3] 2R_16407709_SNP [dm6]	G	A	3.396e^-4	0.984	INTRON Sema-2b
3L	8628705	3L_8628705_SNP [dm3] 3L_8635605_SNP [dm6]	G	A	3.405e^-4	0.984	INTRON Zasp66
2R	8839074	2R_8839074_SNP [dm3] 2R_12951569_SNP [dm6]	G	A	3.409e^-4	0.984	INTRON CG44251 & 1 other
3R	23410108	3R_23410108_SNP [dm3] 3R_27584386_SNP [dm6]	G	A	3.418e^-4	0.984	INTRON raps	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7691391	3L_7691391_SNP [dm3] 3L_7698291_SNP [dm6]	G	T	3.418e^-4	0.984	NON_SYNONYMOUS_CODING Ank2 INTRON CG32373	TF binding site mE1_TFBS_sens
3R	24902133	3R_24902133_SNP [dm3] 3R_29076411_SNP [dm6]	G	T	3.430e^-4	0.984	INTRON CG11873
2L	8343274	2L_8343274_DEL [dm3] 2L_8343274_DEL [dm6]	AC	A	3.435e^-4	0.984	DOWNSTREAM CR45371 INTRON CG14273
2R	15842784	2R_15842784_SNP [dm3] 2R_19955279_SNP [dm6]	C	T	3.440e^-4	0.984	UPSTREAM CG44623 DOWNSTREAM CG44622 INTERGENIC
3R	2223902	3R_2223902_SNP [dm3] 3R_6398180_SNP [dm6]	G	C	3.445e^-4	0.984	INTRON Dmtn	TF binding site mE1_TFBS_cnc
2L	8495107	2L_8495107_SNP [dm3] 2L_8495107_SNP [dm6]	T	A	3.448e^-4	0.984	UTR_3_PRIME Bace DOWNSTREAM Bace INTRON Dh31	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	964868	3R_964868_SNP [dm3] 3R_5139146_SNP [dm6]	A	G	3.449e^-4	0.984	UPSTREAM CG12589 INTERGENIC
2R	10796258	2R_10796258_SNP [dm3] 2R_14908753_SNP [dm6]	C	A	3.450e^-4	0.984	UPSTREAM CG10249 INTRON CG10249	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17608172	2R_17608172_SNP [dm3] 2R_21720667_SNP [dm6]	C	G	3.452e^-4	0.984	UPSTREAM LBR & 1 other INTRON LBR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3R	13913787	3R_13913787_SNP [dm3] 3R_18088065_SNP [dm6]	T	C	3.463e^-4	0.984	INTERGENIC
3R	13913797	3R_13913797_SNP [dm3] 3R_18088075_SNP [dm6]	T	C	3.463e^-4	0.984	INTERGENIC
2L	11804303	2L_11804303_SNP [dm3] 2L_11804303_SNP [dm6]	T	C	3.471e^-4	0.984	INTRON crol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	17882734	3L_17882734_SNP [dm3] 3L_17889634_SNP [dm6]	A	G	3.499e^-4	0.984	SYNONYMOUS_CODING CG7402
3R	22750306	3R_22750306_SNP [dm3] 3R_26924584_SNP [dm6]	A	G	3.501e^-4	0.984	INTRON sda
3L	21885834	3L_21885834_SNP [dm3] 3L_21892734_SNP [dm6]	C	G	3.513e^-4	0.984	INTRON mub
3L	21871168	3L_21871168_SNP [dm3] 3L_21878068_SNP [dm6]	A	G	3.515e^-4	0.984	INTRON mub	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	8343236	2L_8343236_SNP [dm3] 2L_8343236_SNP [dm6]	C	G	3.542e^-4	0.984	DOWNSTREAM CR45371 INTRON CG14273
3R	22082470	3R_22082470_SNP [dm3] 3R_26256748_SNP [dm6]	T	G	3.567e^-4	0.984	INTRON Ald	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8582271	2L_8582271_SNP [dm3] 2L_8582271_SNP [dm6]	T	C	3.573e^-4	0.984	INTRON Sema-1a
2L	6534132	2L_6534132_SNP [dm3] 2L_6534132_SNP [dm6]	A	G	3.574e^-4	0.984	INTRON eya	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	22401085	3L_22401085_SNP [dm3] 3L_22407985_SNP [dm6]	G	A	3.579e^-4	0.984	UPSTREAM Ten-m INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
2R	14412134	2R_14412134_SNP [dm3] 2R_18524629_SNP [dm6]	G	A	3.592e^-4	0.984	UTR_3_PRIME CG43066
2R	16654547	2R_16654547_SNP [dm3] 2R_20767042_SNP [dm6]	A	G	3.597e^-4	0.984	DOWNSTREAM CR44665 EXON CR44665
3L	3536372	3L_3536372_SNP [dm3] 3L_3536372_SNP [dm6]	C	A	3.599e^-4	0.984	INTRON Eip63E
2R	16371045	2R_16371045_SNP [dm3] 2R_20483540_SNP [dm6]	C	T	3.625e^-4	0.984	INTERGENIC
2L	8929127	2L_8929127_SNP [dm3] 2L_8929127_SNP [dm6]	C	A	3.628e^-4	0.984	NON_SYNONYMOUS_CODING CG34398	TF binding site mE1_TFBS_cad
2L	885686	2L_885686_SNP [dm3] 2L_885686_SNP [dm6]	T	G	3.638e^-4	0.984	UPSTREAM CG15824 INTERGENIC
2L	18906039	2L_18906039_SNP [dm3] 2L_18906039_SNP [dm6]	A	C	3.648e^-4	0.984	UPSTREAM CR44738 INTERGENIC
2L	1292730	2L_1292730_SNP [dm3] 2L_1292730_SNP [dm6]	G	A	3.673e^-4	0.984	NON_SYNONYMOUS_CODING robo3	TF binding site mE1_TFBS_chinmo
2R	18597225	2R_18597225_SNP [dm3] 2R_22709720_SNP [dm6]	C	T	3.677e^-4	0.984	SYNONYMOUS_CODING CG30275 UTR_3_PRIME CG30275
3L	21907477	3L_21907477_SNP [dm3] 3L_21914377_SNP [dm6]	C	G	3.700e^-4	0.984	INTRON mub	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	22518337	3R_22518337_SNP [dm3] 3R_26692615_SNP [dm6]	C	T	3.701e^-4	0.984	UTR_3_PRIME TwdlQ	TF binding site mE1_TFBS_cad
3R	22526777	3R_22526777_SNP [dm3] 3R_26701055_SNP [dm6]	C	T	3.701e^-4	0.984	INTRON amon
3R	22530684	3R_22530684_SNP [dm3] 3R_26704962_SNP [dm6]	C	G	3.701e^-4	0.984	INTRON amon
2R	18228316	2R_18228316_SNP [dm3] 2R_22340811_SNP [dm6]	G	A	3.704e^-4	0.984	SYNONYMOUS_CODING Liprin-gamma	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11373371	3L_11373371_SNP [dm3] 3L_11380271_SNP [dm6]	C	T	3.719e^-4	0.984	INTERGENIC	TF binding site mE1_TFBS_cad
3L	11373375	3L_11373375_SNP [dm3] 3L_11380275_SNP [dm6]	A	T	3.719e^-4	0.984	INTERGENIC	TF binding site mE1_TFBS_cad
3L	11373389	3L_11373389_SNP [dm3] 3L_11380289_SNP [dm6]	T	C	3.719e^-4	0.984	INTERGENIC	TF binding site mE1_TFBS_cad
2R	19782204	2R_19782204_SNP [dm3] 2R_23894681_SNP [dm6]	G	A	3.731e^-4	0.984	SYNONYMOUS_CODING Upf3 UPSTREAM CG17658	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	16380757	3R_16380757_SNP [dm3] 3R_20555035_SNP [dm6]	G	A	3.732e^-4	0.984	UPSTREAM att-ORFA & 1 other INTRON att-ORFA	TF binding site mE1_TFBS_HSA
3R	16380825	3R_16380825_SNP [dm3] 3R_20555103_SNP [dm6]	T	A	3.732e^-4	0.984	UPSTREAM att-ORFA & 1 other INTRON att-ORFA	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	16380848	3R_16380848_SNP [dm3] 3R_20555126_SNP [dm6]	C	T	3.732e^-4	0.984	UPSTREAM att-ORFA & 1 other INTRON att-ORFA	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	16380850	3R_16380850_SNP [dm3] 3R_20555128_SNP [dm6]	C	T	3.732e^-4	0.984	UPSTREAM att-ORFA & 1 other INTRON att-ORFA	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	16380853	3R_16380853_SNP [dm3] 3R_20555131_SNP [dm6]	C	T	3.732e^-4	0.984	UPSTREAM att-ORFA & 1 other INTRON att-ORFA	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	16380857	3R_16380857_INS [dm3] 3R_20555135_INS [dm6]	C	TATTAATATTA...	3.732e^-4	0.984	UPSTREAM att-ORFA & 1 other INTRON att-ORFA	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	16380910	3R_16380910_SNP [dm3] 3R_20555188_SNP [dm6]	G	A	3.732e^-4	0.984	UPSTREAM att-ORFA & 1 other INTRON att-ORFA	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	22861791	3L_22861791_DEL [dm3] 3L_22868691_DEL [dm6]	GTG	G	3.734e^-4	0.984	UTR_3_PRIME Arf79F UPSTREAM CG11137 DOWNSTREAM snoRNA:Me28S-G764	TF binding site BDTNP1_TFBS_dl
X	6905072	X_6905072_SNP [dm3] X_7011039_SNP [dm6]	C	T	3.736e^-4	0.984	UPSTREAM CG32736 & 1 other INTRON cm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	17431522	2R_17431522_SNP [dm3] 2R_21544017_SNP [dm6]	T	C	3.736e^-4	0.984	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12529233	3L_12529233_SNP [dm3] 3L_12536133_SNP [dm6]	C	T	3.745e^-4	0.984	SYNONYMOUS_CODING CG4069 DOWNSTREAM CG10688	TF binding site mE1_TFBS_cad
X	6499498	X_6499498_SNP [dm3] X_6605465_SNP [dm6]	G	T	3.748e^-4	0.984	INTRON pigs
2L	9632969	2L_9632969_DEL [dm3] 2L_9632969_DEL [dm6]	TTGCTAGCACT...	T	3.753e^-4	0.984	INTERGENIC
3L	21847073	3L_21847073_SNP [dm3] 3L_21853973_SNP [dm6]	T	C	3.753e^-4	0.984	DOWNSTREAM tRNA:CR32449 INTRON mub
2R	16987827	2R_16987827_SNP [dm3] 2R_21100322_SNP [dm6]	T	C	3.767e^-4	0.984	SYNONYMOUS_CODING CG34396	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_inv
3R	21353635	3R_21353635_SNP [dm3] 3R_25527913_SNP [dm6]	C	G	3.781e^-4	0.984	INTRON msi
3R	13895159	3R_13895159_SNP [dm3] 3R_18069437_SNP [dm6]	A	C	3.791e^-4	0.984	INTERGENIC
3L	17897512	3L_17897512_SNP [dm3] 3L_17904412_SNP [dm6]	A	T	3.800e^-4	0.984	INTRON Prestin
3L	2711441	3L_2711441_SNP [dm3] 3L_2711441_SNP [dm6]	A	G	3.815e^-4	0.984	UTR_5_PRIME Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7652302	2L_7652302_SNP [dm3] 2L_7652302_SNP [dm6]	C	G	3.819e^-4	0.984	INTRON Slob
2L	10629538	2L_10629538_SNP [dm3] 2L_10629538_SNP [dm6]	C	G	3.825e^-4	0.984	NON_SYNONYMOUS_CODING CG7329
2R	6867137	2R_6867137_SNP [dm3] 2R_10979632_SNP [dm6]	T	A	3.829e^-4	0.984	UTR_3_PRIME luna
3L	2985251	3L_2985251_SNP [dm3] 3L_2985251_SNP [dm6]	T	G	3.867e^-4	0.984	INTERGENIC
2R	7445718	2R_7445718_SNP [dm3] 2R_11558213_SNP [dm6]	C	T	3.900e^-4	0.984	INTERGENIC
3R	18292079	3R_18292079_SNP [dm3] 3R_22466357_SNP [dm6]	G	T	3.911e^-4	0.984	SYNONYMOUS_CODING Pebp1 DOWNSTREAM CG5377 & 1 other	TF binding site mE1_TFBS_cad
3L	11388928	3L_11388928_SNP [dm3] 3L_11395828_SNP [dm6]	A	G	3.929e^-4	0.984	DOWNSTREAM CG11726 INTERGENIC
3L	21846149	3L_21846149_SNP [dm3] 3L_21853049_SNP [dm6]	G	A	3.944e^-4	0.984	INTRON mub
3R	22525879	3R_22525879_SNP [dm3] 3R_26700157_SNP [dm6]	T	A	3.960e^-4	0.984	SYNONYMOUS_CODING amon
2R	10796259	2R_10796259_DEL [dm3] 2R_14908754_DEL [dm6]	TATA	T	3.961e^-4	0.984	UPSTREAM CG10249 INTRON CG10249	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	16654528	2R_16654528_SNP [dm3] 2R_20767023_SNP [dm6]	T	C	3.961e^-4	0.984	DOWNSTREAM CR44665 EXON CR44665
2R	16654571	2R_16654571_SNP [dm3] 2R_20767066_SNP [dm6]	A	C	3.961e^-4	0.984	DOWNSTREAM CR44665 EXON CR44665
3L	7648057	3L_7648057_SNP [dm3] 3L_7654957_SNP [dm6]	T	A	3.975e^-4	0.984	UPSTREAM CG7492 DOWNSTREAM Ank2 INTRON CG32373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7648223	3L_7648223_SNP [dm3] 3L_7655123_SNP [dm6]	C	T	3.975e^-4	0.984	UPSTREAM CG7492 DOWNSTREAM Ank2 INTRON CG32373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25801160	3R_25801160_SNP [dm3] 3R_29975438_SNP [dm6]	A	T	3.981e^-4	0.984	INTERGENIC
2R	11216827	2R_11216827_SNP [dm3] 2R_15329322_SNP [dm6]	C	T	3.984e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	10563894	3R_10563894_INS [dm3] 3R_14738172_INS [dm6]	A	ACTAA	3.999e^-4	0.984	INTRON eff	TF binding site BDTNP1_TFBS_dl
3L	12669914	3L_12669914_INS [dm3] 3L_12676814_INS [dm6]	G	GG	4.000e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3L	521494	3L_521494_SNP [dm3] 3L_521494_SNP [dm6]	C	G	4.007e^-4	0.984	INTRON klar
2R	14367211	2R_14367211_SNP [dm3] 2R_18479706_SNP [dm6]	T	A	4.017e^-4	0.984	INTRON CG30116
2L	9350349	2L_9350349_SNP [dm3] 2L_9350349_SNP [dm6]	G	A	4.021e^-4	0.984	UPSTREAM CG13110 DOWNSTREAM CG43350 INTERGENIC
2R	17730773	2R_17730773_SNP [dm3] 2R_21843268_SNP [dm6]	C	T	4.024e^-4	0.984	UPSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	17844702	3L_17844702_SNP [dm3] 3L_17851602_SNP [dm6]	T	C	4.024e^-4	0.984	SYNONYMOUS_CODING CG7441
3L	19022441	3L_19022441_SNP [dm3] 3L_19029341_SNP [dm6]	G	A	4.044e^-4	0.984	INTRON nkd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13269366	2R_13269366_SNP [dm3] 2R_17381861_SNP [dm6]	C	G	4.063e^-4	0.984	INTERGENIC	TF binding site mE1_TFBS_inv
2L	8393767	2L_8393767_SNP [dm3] 2L_8393767_SNP [dm6]	C	G	4.065e^-4	0.984	NON_SYNONYMOUS_CODING lectin-29Ca UPSTREAM Acp29AB & 1 other DOWNSTREAM Peritrophin-15b
3L	11033624	3L_11033624_SNP [dm3] 3L_11040524_SNP [dm6]	A	T	4.069e^-4	0.984	SYNONYMOUS_CODING CG43693 UPSTREAM CG43693 INTRON CG43693
X	10773302	X_10773302_SNP [dm3] X_10879269_SNP [dm6]	T	C	4.075e^-4	0.984	SYNONYMOUS_CODING Ork1	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22537060	3R_22537060_SNP [dm3] 3R_26711338_SNP [dm6]	A	G	4.082e^-4	0.984	INTRON amon
3L	16329944	3L_16329944_SNP [dm3] 3L_16336844_SNP [dm6]	C	G	4.082e^-4	0.984	INTERGENIC
2R	11899533	2R_11899533_SNP [dm3] 2R_16012028_SNP [dm6]	G	T	4.082e^-4	0.984	SYNONYMOUS_CODING CG8389 UPSTREAM CG8388	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8931800	2L_8931800_SNP [dm3] 2L_8931800_SNP [dm6]	T	G	4.093e^-4	0.984	SYNONYMOUS_CODING CG34398 INTRON CG34398
2R	20518051	2R_20518051_SNP [dm3] 2R_24630528_SNP [dm6]	C	T	4.106e^-4	0.984	UPSTREAM Cyp9c1 DOWNSTREAM CR43787 INTRON CG13594
2R	19905892	2R_19905892_SNP [dm3] 2R_24018369_SNP [dm6]	G	A	4.107e^-4	0.984	SYNONYMOUS_CODING CG3121	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	21857864	3L_21857864_SNP [dm3] 3L_21864764_SNP [dm6]	G	C	4.118e^-4	0.984	INTRON mub
3L	8386441	3L_8386441_SNP [dm3] 3L_8393341_SNP [dm6]	G	A	4.118e^-4	0.984	SYNONYMOUS_CODING Jon66Cii DOWNSTREAM Jon66Ci	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	16956173	2R_16956173_SNP [dm3] 2R_21068668_SNP [dm6]	T	C	4.124e^-4	0.984	INTRON Cht9 EXON CR44703	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4659222	3L_4659222_SNP [dm3] 3L_4659222_SNP [dm6]	T	G	4.129e^-4	0.984	INTRON axo
X	5031580	X_5031580_SNP [dm3] X_5137547_SNP [dm6]	A	C	4.136e^-4	0.984	INTRON rg & 1 other
2R	16619549	2R_16619549_SNP [dm3] 2R_20732044_SNP [dm6]	T	A	4.144e^-4	0.984	INTRON dpr
2L	7916690	2L_7916690_SNP [dm3] 2L_7916690_SNP [dm6]	G	A	4.147e^-4	0.984	INTRON Snoo
3L	12674377	3L_12674377_SNP [dm3] 3L_12681277_SNP [dm6]	A	T	4.150e^-4	0.984	INTERGENIC
2R	4464429	2R_4464429_SNP [dm3] 2R_8576924_SNP [dm6]	A	G	4.160e^-4	0.984	SYNONYMOUS_CODING CG42326	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22500861	3L_22500861_SNP [dm3] 3L_22507761_SNP [dm6]	C	A	4.163e^-4	0.984	INTERGENIC
3R	16380906	3R_16380906_SNP [dm3] 3R_20555184_SNP [dm6]	G	T	4.170e^-4	0.984	UPSTREAM att-ORFA & 1 other INTRON att-ORFA	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	12233613	3L_12233613_SNP [dm3] 3L_12240513_SNP [dm6]	C	G	4.185e^-4	0.984	INTRON app	TF binding site BDTNP1_TFBS_twi
3R	6279106	3R_6279106_SNP [dm3] 3R_10453384_SNP [dm6]	T	G	4.185e^-4	0.984	INTERGENIC
3L	18197248	3L_18197248_SNP [dm3] 3L_18204148_SNP [dm6]	C	G	4.187e^-4	0.984	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	9893215	2R_9893215_SNP [dm3] 2R_14005710_SNP [dm6]	G	T	4.188e^-4	0.984	DOWNSTREAM mir-4978 INTRON mam
3L	17328529	3L_17328529_SNP [dm3] 3L_17335429_SNP [dm6]	A	G	4.191e^-4	0.984	DOWNSTREAM CR44563 & 1 other INTERGENIC
3L	3617303	3L_3617303_SNP [dm3] 3L_3617303_SNP [dm6]	A	C	4.197e^-4	0.984	DOWNSTREAM CG10357 INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad
3L	1367834	3L_1367834_SNP [dm3] 3L_1367834_SNP [dm6]	A	T	4.210e^-4	0.984	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27177581	3R_27177581_SNP [dm3] 3R_31351859_SNP [dm6]	A	T	4.212e^-4	0.984	INTRON CG34347	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25236602	3R_25236602_SNP [dm3] 3R_29410880_SNP [dm6]	C	T	4.216e^-4	0.984	INTRON Ptp99A
2R	4220511	2R_4220511_SNP [dm3] 2R_8333006_SNP [dm6]	C	T	4.222e^-4	0.984	INTRON pdm3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3L	17694776	3L_17694776_SNP [dm3] 3L_17701676_SNP [dm6]	G	T	4.222e^-4	0.984	INTRON Ccn
X	4501192	X_4501192_SNP [dm3] X_4607159_SNP [dm6]	G	T	4.229e^-4	0.984	INTRON CR32773
3L	20370806	3L_20370806_SNP [dm3] 3L_20377706_SNP [dm6]	A	G	4.230e^-4	0.984	UPSTREAM RhoBTB INTRON RhoBTB
3L	7774764	3L_7774764_SNP [dm3] 3L_7781664_SNP [dm6]	A	G	4.242e^-4	0.984	INTRON CG32369	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	4615094	X_4615094_DEL [dm3] X_4721061_DEL [dm6]	GTG	A	4.243e^-4	0.984	INTRON Proc-R
2R	19501231	2R_19501231_SNP [dm3] 2R_23613708_SNP [dm6]	A	G	4.243e^-4	0.984	INTRON CG17664 & 1 other
3R	23410121	3R_23410121_SNP [dm3] 3R_27584399_SNP [dm6]	A	C	4.244e^-4	0.984	INTRON raps	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	3480873	X_3480873_SNP [dm3] X_3586840_SNP [dm6]	A	G	4.244e^-4	0.984	INTRON AstA-R1
3R	10568038	3R_10568038_SNP [dm3] 3R_14742316_SNP [dm6]	C	G	4.273e^-4	0.984	NON_SYNONYMOUS_CODING jvl UPSTREAM eff	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	20239065	2R_20239065_SNP [dm3] 2R_24351542_SNP [dm6]	A	G	4.282e^-4	0.984	UPSTREAM CG44812 INTRON bs EXON CR44811	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5408875	X_5408875_SNP [dm3] X_5514842_SNP [dm6]	A	G	4.283e^-4	0.984	INTERGENIC
3L	16787693	3L_16787693_SNP [dm3] 3L_16794593_SNP [dm6]	C	T	4.295e^-4	0.984	NON_SYNONYMOUS_CODING CG9674
2L	8495270	2L_8495270_SNP [dm3] 2L_8495270_SNP [dm6]	A	G	4.307e^-4	0.984	SYNONYMOUS_CODING Bace INTRON Dh31	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8495495	2L_8495495_SNP [dm3] 2L_8495495_SNP [dm6]	A	G	4.307e^-4	0.984	SYNONYMOUS_CODING Bace INTRON Dh31	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18230072	2R_18230072_SNP [dm3] 2R_22342567_SNP [dm6]	G	T	4.309e^-4	0.984	SYNONYMOUS_CODING Liprin-gamma INTRON Liprin-gamma
3L	13294182	3L_13294182_SNP [dm3] 3L_13301082_SNP [dm6]	G	A	4.335e^-4	0.984	UPSTREAM CG43147 & 1 other INTERGENIC
2R	16758384	2R_16758384_SNP [dm3] 2R_20870879_SNP [dm6]	T	C	4.350e^-4	0.984	START_GAINED Ipk1 UTR_5_PRIME Ipk1 DOWNSTREAM IM14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3003705	3L_3003705_SNP [dm3] 3L_3003705_SNP [dm6]	A	T	4.352e^-4	0.984	UTR_5_PRIME FMRFaR INTRON FMRFaR
3R	21178121	3R_21178121_SNP [dm3] 3R_25352399_SNP [dm6]	T	C	4.365e^-4	0.984	DOWNSTREAM Fur1 INTRON Fur1
2L	3837362	2L_3837362_SNP [dm3] 2L_3837362_SNP [dm6]	A	G	4.366e^-4	0.984	SYNONYMOUS_CODING slp2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	16469839	2L_16469839_SNP [dm3] 2L_16469839_SNP [dm6]	A	G	4.371e^-4	0.984	INTRON dac	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
X	3613019	X_3613019_SNP [dm3] X_3718986_SNP [dm6]	A	G	4.377e^-4	0.984	INTRON Rala	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	6629658	3R_6629658_SNP [dm3] 3R_10803936_SNP [dm6]	G	T	4.378e^-4	0.984	UPSTREAM CG14692 INTERGENIC
2L	2090746	2L_2090746_SNP [dm3] 2L_2090746_SNP [dm6]	G	C	4.380e^-4	0.984	INTRON dpr3
3L	22396086	3L_22396086_SNP [dm3] 3L_22402986_SNP [dm6]	A	T	4.399e^-4	0.984	INTRON Ten-m	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2R	8836156	2R_8836156_SNP [dm3] 2R_12948651_SNP [dm6]	T	A	4.405e^-4	0.984	UTR_3_PRIME CG44251	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6531108	3L_6531108_DEL [dm3] 3L_6538008_DEL [dm6]	GG	G	4.432e^-4	0.984	INTRON sfl
3L	11551811	3L_11551811_SNP [dm3] 3L_11558711_SNP [dm6]	G	A	4.433e^-4	0.984	UTR_5_PRIME Mob2 INTRON Mob2	TF binding site mE1_TFBS_cad
3L	8752483	3L_8752483_SNP [dm3] 3L_8759383_SNP [dm6]	T	G	4.436e^-4	0.984	SPLICE_SITE_REGION Fhos INTRON Fhos
3L	8752504	3L_8752504_SNP [dm3] 3L_8759404_SNP [dm6]	A	C	4.436e^-4	0.984	INTRON Fhos
3R	918436	3R_918436_SNP [dm3] 3R_5092714_SNP [dm6]	C	T	4.453e^-4	0.984	INTERGENIC
2L	11807939	2L_11807939_SNP [dm3] 2L_11807939_SNP [dm6]	A	G	4.459e^-4	0.984	INTRON crol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
3L	21833213	3L_21833213_SNP [dm3] 3L_21840113_SNP [dm6]	C	G	4.473e^-4	0.984	UTR_5_PRIME P5CDh1 INTRON P5CDh1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	8672837	3L_8672837_SNP [dm3] 3L_8679737_SNP [dm6]	A	G	4.477e^-4	0.984	DOWNSTREAM h INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	8672848	3L_8672848_SNP [dm3] 3L_8679748_SNP [dm6]	C	T	4.477e^-4	0.984	DOWNSTREAM h INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	5660867	3L_5660867_INS [dm3] 3L_5667767_INS [dm6]	A	ATT	4.477e^-4	0.984	INTRON sif
3R	10564160	3R_10564160_SNP [dm3] 3R_14738438_SNP [dm6]	T	C	4.478e^-4	0.984	INTRON eff	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	14749852	2R_14749852_SNP [dm3] 2R_18862347_SNP [dm6]	G	A	4.482e^-4	0.984	UPSTREAM CG43069 & 1 other INTERGENIC
X	18350724	X_18350724_SNP [dm3] X_18456691_SNP [dm6]	A	G	4.494e^-4	0.984	INTRON CG32547
3R	16293207	3R_16293207_SNP [dm3] 3R_20467485_SNP [dm6]	C	T	4.501e^-4	0.984	INTRON Gfrl
3L	17848931	3L_17848931_SNP [dm3] 3L_17855831_SNP [dm6]	G	A	4.502e^-4	0.984	UPSTREAM CG5535 INTRON CG5535	TF binding site BDTNP1_TFBS_twi
2R	19540619	2R_19540619_SNP [dm3] 2R_23653096_SNP [dm6]	C	T	4.504e^-4	0.984	SYNONYMOUS_CODING retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	4720788	2L_4720788_SNP [dm3] 2L_4720788_SNP [dm6]	A	T	4.506e^-4	0.984	UTR_3_PRIME CG34351
3R	21449047	3R_21449047_SNP [dm3] 3R_25623325_SNP [dm6]	G	A	4.507e^-4	0.984	SYNONYMOUS_CODING Npl4	TF binding site mE1_TFBS_sens
2L	16460449	2L_16460449_SNP [dm3] 2L_16460449_SNP [dm6]	A	T	4.510e^-4	0.984	INTERGENIC	regulatory region REDfly_CRMs
3L	8755476	3L_8755476_SNP [dm3] 3L_8762376_SNP [dm6]	C	G	4.517e^-4	0.984	NON_SYNONYMOUS_CODING Fhos	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	8756430	3L_8756430_SNP [dm3] 3L_8763330_SNP [dm6]	T	A	4.517e^-4	0.984	INTRON Fhos
2R	20238838	2R_20238838_SNP [dm3] 2R_24351315_SNP [dm6]	C	T	4.520e^-4	0.984	DOWNSTREAM CR44811 INTRON bs & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10470996	3L_10470996_SNP [dm3] 3L_10477896_SNP [dm6]	G	T	4.522e^-4	0.984	INTERGENIC
2L	4659832	2L_4659832_SNP [dm3] 2L_4659832_SNP [dm6]	T	C	4.551e^-4	0.984	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	19015524	3R_19015524_INS [dm3] 3R_23189802_INS [dm6]	A	ATA	4.554e^-4	0.984	UPSTREAM cnc INTRON cnc	TF binding site mE1_TFBS_cad mE1_TFBS_cnc
2L	2186916	2L_2186916_SNP [dm3] 2L_2186916_SNP [dm6]	T	A	4.557e^-4	0.984	UPSTREAM tRNA:CR31946 DOWNSTREAM CR44066 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	17325444	X_17325444_SNP [dm3] X_17431411_SNP [dm6]	G	C	4.557e^-4	0.984	INTRON CG12994
3L	2999955	3L_2999955_SNP [dm3] 3L_2999955_SNP [dm6]	G	A	4.560e^-4	0.984	INTERGENIC
3R	6771414	3R_6771414_SNP [dm3] 3R_10945692_SNP [dm6]	A	G	4.613e^-4	0.984	INTERGENIC
3L	1447133	3L_1447133_INS [dm3] 3L_1447133_INS [dm6]	G	GTCGG	4.617e^-4	0.984	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3560280	3L_3560280_SNP [dm3] 3L_3560280_SNP [dm6]	G	A	4.629e^-4	0.984	INTRON Eip63E	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	6535299	3L_6535299_SNP [dm3] 3L_6542199_SNP [dm6]	T	G	4.653e^-4	0.984	INTRON sfl	TF binding site BDTNP1_TFBS_dl
2R	10345644	2R_10345644_SNP [dm3] 2R_14458139_SNP [dm6]	G	T	4.656e^-4	0.984	UPSTREAM Oaz INTRON Oaz	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	10346641	2R_10346641_SNP [dm3] 2R_14459136_SNP [dm6]	G	A	4.656e^-4	0.984	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10346651	2R_10346651_SNP [dm3] 2R_14459146_SNP [dm6]	C	A	4.656e^-4	0.984	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	10346657	2R_10346657_SNP [dm3] 2R_14459152_SNP [dm6]	C	T	4.656e^-4	0.984	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	8533869	2R_8533869_SNP [dm3] 2R_12646364_SNP [dm6]	G	A	4.664e^-4	0.984	INTRON CG8785
3L	17844780	3L_17844780_SNP [dm3] 3L_17851680_SNP [dm6]	A	T	4.666e^-4	0.984	SYNONYMOUS_CODING CG7441 DOWNSTREAM CG5535
2L	6009428	2L_6009428_SNP [dm3] 2L_6009428_SNP [dm6]	G	A	4.672e^-4	0.984	SYNONYMOUS_CODING CG9098	TF binding site mE1_TFBS_chinmo
2L	16472945	2L_16472945_SNP [dm3] 2L_16472945_SNP [dm6]	T	A	4.673e^-4	0.984	SYNONYMOUS_CODING dac	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19331536	2L_19331536_SNP [dm3] 2L_19331536_SNP [dm6]	C	A	4.673e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	10122068	2L_10122068_SNP [dm3] 2L_10122068_SNP [dm6]	C	T	4.675e^-4	0.984	DOWNSTREAM CG13135 INTRON CG44153 & 1 other
3L	7648079	3L_7648079_SNP [dm3] 3L_7654979_SNP [dm6]	T	G	4.680e^-4	0.984	UPSTREAM CG7492 DOWNSTREAM Ank2 INTRON CG32373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25351170	3R_25351170_SNP [dm3] 3R_29525448_SNP [dm6]	A	G	4.687e^-4	0.984	INTERGENIC
3L	13989584	3L_13989584_SNP [dm3] 3L_13996484_SNP [dm6]	C	T	4.690e^-4	0.984	UTR_3_PRIME 26-29-p UPSTREAM CG17361	TF binding site mE1_TFBS_cad
2R	9805525	2R_9805525_SNP [dm3] 2R_13918020_SNP [dm6]	A	G	4.693e^-4	0.984	INTRON shot
X	13624147	X_13624147_SNP [dm3] X_13730114_SNP [dm6]	A	G	4.694e^-4	0.984	SYNONYMOUS_CODING g	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	2204336	3L_2204336_SNP [dm3] 3L_2204336_SNP [dm6]	G	T	4.707e^-4	0.984	INTERGENIC
X	1982460	X_1982460_SNP [dm3] X_2088427_SNP [dm6]	A	T	4.710e^-4	0.984	UPSTREAM Unc-76 INTRON Unc-76
3L	12897337	3L_12897337_SNP [dm3] 3L_12904237_SNP [dm6]	A	T	4.713e^-4	0.984	UPSTREAM CG32117 INTERGENIC
X	13012083	X_13012083_SNP [dm3] X_13118050_SNP [dm6]	T	C	4.722e^-4	0.984	INTRON CG42237
2R	8015401	2R_8015401_SNP [dm3] 2R_12127896_SNP [dm6]	C	G	4.725e^-4	0.984	INTERGENIC
3L	8012566	3L_8012566_SNP [dm3] 3L_8019466_SNP [dm6]	C	T	4.725e^-4	0.984	INTRON nmo
3L	8012599	3L_8012599_SNP [dm3] 3L_8019499_SNP [dm6]	T	A	4.725e^-4	0.984	INTRON nmo
3L	8012620	3L_8012620_SNP [dm3] 3L_8019520_SNP [dm6]	C	T	4.725e^-4	0.984	INTRON nmo
2R	7386798	2R_7386798_SNP [dm3] 2R_11499293_SNP [dm6]	T	A	4.736e^-4	0.984	INTRON inv	TF binding site mE1_TFBS_inv
3R	9662965	3R_9662965_DEL [dm3] 3R_13837243_DEL [dm6]	TG	T	4.738e^-4	0.984	DOWNSTREAM CG31495 INTRON Nsf2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9664004	3R_9664004_SNP [dm3] 3R_13838282_SNP [dm6]	G	A	4.738e^-4	0.984	UTR_3_PRIME CG31495 UPSTREAM Nsf2 DOWNSTREAM CG31495	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	9664249	3R_9664249_DEL [dm3] 3R_13838527_DEL [dm6]	ATATATATAATA...	A	4.738e^-4	0.984	UTR_3_PRIME CG31495 UPSTREAM Nsf2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4277729	3R_4277729_SNP [dm3] 3R_8452007_SNP [dm6]	T	C	4.739e^-4	0.984	INTRON CG45263	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3053756	3L_3053756_SNP [dm3] 3L_3053756_SNP [dm6]	C	T	4.741e^-4	0.984	INTRON CG1271	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17849530	3L_17849530_SNP [dm3] 3L_17856430_SNP [dm6]	A	G	4.741e^-4	0.984	UPSTREAM CG5535 INTRON CG5535	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10797271	2R_10797271_INS [dm3] 2R_14909766_INS [dm6]	A	AAA	4.751e^-4	0.984	INTRON CG10249
3L	1565651	3L_1565651_SNP [dm3] 3L_1565651_SNP [dm6]	C	A	4.782e^-4	0.984	INTRON CG7879 & 1 other	TF binding site mE1_TFBS_sens
2R	16567538	2R_16567538_DEL [dm3] 2R_20680033_DEL [dm6]	TTAGACAAATGCCGACT...	T	4.784e^-4	0.984	INTERGENIC
2R	6000532	2R_6000532_SNP [dm3] 2R_10113027_SNP [dm6]	C	A	4.796e^-4	0.984	SYNONYMOUS_CODING Pfk
3L	13294600	3L_13294600_SNP [dm3] 3L_13301500_SNP [dm6]	C	A	4.800e^-4	0.984	UPSTREAM SP & 1 other INTERGENIC
3L	7271654	3L_7271654_SNP [dm3] 3L_7278554_SNP [dm6]	T	A	4.803e^-4	0.984	INTRON unc-13-4A
X	14554166	X_14554166_DEL [dm3] X_14660133_DEL [dm6]	AACAAGGAA	A	4.805e^-4	0.984	INTERGENIC
2R	5680218	2R_5680218_SNP [dm3] 2R_9792713_SNP [dm6]	A	T	4.807e^-4	0.984	UPSTREAM CG1698 INTRON CG1688
2L	7918466	2L_7918466_SNP [dm3] 2L_7918466_SNP [dm6]	A	T	4.808e^-4	0.984	INTRON Snoo	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7451158	3L_7451158_SNP [dm3] 3L_7458058_SNP [dm6]	G	A	4.815e^-4	0.984	INTRON ppk26
X	5476037	X_5476037_SNP [dm3] X_5582004_SNP [dm6]	C	T	4.854e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	22500102	3L_22500102_SNP [dm3] 3L_22507002_SNP [dm6]	C	G	4.858e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16843476	2R_16843476_SNP [dm3] 2R_20955971_SNP [dm6]	G	A	4.884e^-4	0.984	INTRON hbn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	16843480	2R_16843480_DEL [dm3] 2R_20955975_DEL [dm6]	ACTTTTCTA	A	4.884e^-4	0.984	INTRON hbn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	17872781	X_17872781_SNP [dm3] X_17978748_SNP [dm6]	T	C	4.884e^-4	0.984	INTRON Sh
3L	13334133	3L_13334133_SNP [dm3] 3L_13341033_SNP [dm6]	C	A	4.888e^-4	0.984	INTERGENIC
X	2502391	X_2502391_SNP [dm3] X_2608358_SNP [dm6]	T	G	4.889e^-4	0.984	SYNONYMOUS_CODING Bzd DOWNSTREAM CG8636	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
3L	17882411	3L_17882411_SNP [dm3] 3L_17889311_SNP [dm6]	A	G	4.890e^-4	0.984	INTRON CG7402
X	14554162	X_14554162_SNP [dm3] X_14660129_SNP [dm6]	T	A	4.890e^-4	0.984	INTERGENIC
3L	21879555	3L_21879555_SNP [dm3] 3L_21886455_SNP [dm6]	G	A	4.922e^-4	0.984	INTRON mub & 1 other
2R	19752074	2R_19752074_SNP [dm3] 2R_23864551_SNP [dm6]	A	G	4.924e^-4	0.984	UPSTREAM CG4585 & 1 other INTRON CG4585	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
3R	25792432	3R_25792432_DEL [dm3] 3R_29966710_DEL [dm6]	AA	A	4.931e^-4	0.984	INTRON TkR99D
X	6295175	X_6295175_SNP [dm3] X_6401142_SNP [dm6]	T	G	4.939e^-4	0.984	INTERGENIC
2R	18307718	2R_18307718_SNP [dm3] 2R_22420213_SNP [dm6]	G	A	4.940e^-4	0.984	SYNONYMOUS_CODING mRpS29 UPSTREAM rad50	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11799612	2L_11799612_SNP [dm3] 2L_11799612_SNP [dm6]	C	T	4.946e^-4	0.984	INTRON crol	TF binding site mE1_TFBS_cad
2R	17903812	2R_17903812_SNP [dm3] 2R_22016307_SNP [dm6]	A	G	4.956e^-4	0.984	INTRON CG34370
3R	7529855	3R_7529855_SNP [dm3] 3R_11704133_SNP [dm6]	A	G	4.983e^-4	0.984	NON_SYNONYMOUS_CODING I-t
X	3919091	X_3919091_SNP [dm3] X_4025058_SNP [dm6]	C	A	4.990e^-4	0.984	INTERGENIC
3R	13948010	3R_13948010_SNP [dm3] 3R_18122288_SNP [dm6]	G	C	4.992e^-4	0.984	UTR_5_PRIME sr INTRON sr	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	13294147	3L_13294147_SNP [dm3] 3L_13301047_SNP [dm6]	C	A	5.003e^-4	0.984	UPSTREAM CG43147 & 1 other INTERGENIC
3L	17882066	3L_17882066_SNP [dm3] 3L_17888966_SNP [dm6]	C	T	5.004e^-4	0.984	INTRON CG7402
2R	5688585	2R_5688585_SNP [dm3] 2R_9801080_SNP [dm6]	A	T	5.008e^-4	0.984	INTRON CG1688
3R	10784069	3R_10784069_SNP [dm3] 3R_14958347_SNP [dm6]	A	T	5.011e^-4	0.984	INTERGENIC
3R	3703757	3R_3703757_INS [dm3] 3R_7878035_INS [dm6]	A	AGCA	5.020e^-4	0.984	INTRON CG17816
2L	4380186	2L_4380186_SNP [dm3] 2L_4380186_SNP [dm6]	G	A	5.021e^-4	0.984	UTR_3_PRIME Traf4 DOWNSTREAM CG17612	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
X	4918299	X_4918299_SNP [dm3] X_5024266_SNP [dm6]	C	T	5.035e^-4	0.984	INTRON CR44833	regulatory region REDfly_CRMs
3L	4398834	3L_4398834_SNP [dm3] 3L_4398834_SNP [dm6]	A	T	5.042e^-4	0.984	INTRON slow
3L	10242185	3L_10242185_SNP [dm3] 3L_10249085_SNP [dm6]	T	A	5.050e^-4	0.984	UPSTREAM CR44540 INTERGENIC
3R	23410310	3R_23410310_SNP [dm3] 3R_27584588_SNP [dm6]	G	A	5.060e^-4	0.984	INTRON raps	TF binding site mE1_TFBS_chinmo
2R	16566417	2R_16566417_SNP [dm3] 2R_20678912_SNP [dm6]	T	G	5.063e^-4	0.984	INTERGENIC
X	6093993	X_6093993_SNP [dm3] X_6199960_SNP [dm6]	G	A	5.077e^-4	0.984	UPSTREAM CG43090 DOWNSTREAM vanin-like INTERGENIC
2L	7629859	2L_7629859_SNP [dm3] 2L_7629859_SNP [dm6]	C	T	5.081e^-4	0.984	INTERGENIC
2L	10227553	2L_10227553_SNP [dm3] 2L_10227553_SNP [dm6]	T	G	5.087e^-4	0.984	UPSTREAM CG5708 DOWNSTREAM CG5694 INTERGENIC	TF binding site mE1_TFBS_cad
3R	13185662	3R_13185662_SNP [dm3] 3R_17359940_SNP [dm6]	A	C	5.088e^-4	0.984	INTRON beat-IIa
X	2713498	X_2713498_SNP [dm3] X_2819465_SNP [dm6]	T	C	5.099e^-4	0.984	INTRON kirre
3L	21885764	3L_21885764_SNP [dm3] 3L_21892664_SNP [dm6]	G	T	5.137e^-4	0.984	INTRON mub
3L	9563884	3L_9563884_SNP [dm3] 3L_9570784_SNP [dm6]	G	A	5.138e^-4	0.984	INTRON CG42673
X	3222410	X_3222410_SNP [dm3] X_3328377_SNP [dm6]	G	C	5.139e^-4	0.984	INTRON CR44886 & 1 other
3L	8593000	3L_8593000_SNP [dm3] 3L_8599900_SNP [dm6]	A	G	5.146e^-4	0.984	SYNONYMOUS_CODING Nelf-E DOWNSTREAM CG43078
3R	21851676	3R_21851676_SNP [dm3] 3R_26025954_SNP [dm6]	G	C	5.149e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2L	11799982	2L_11799982_SNP [dm3] 2L_11799982_SNP [dm6]	G	A	5.149e^-4	0.984	INTRON crol	TF binding site mE1_TFBS_cad
2L	19818318	2L_19818318_SNP [dm3] 2L_19818318_SNP [dm6]	A	G	5.161e^-4	0.984	INTRON sick	transposable element FlyBase
3L	13558866	3L_13558866_SNP [dm3] 3L_13565766_SNP [dm6]	G	C	5.174e^-4	0.984	INTRON bru-3
2R	11490132	2R_11490132_SNP [dm3] 2R_15602627_SNP [dm6]	C	A	5.186e^-4	0.984	INTERGENIC
3L	17844213	3L_17844213_SNP [dm3] 3L_17851113_SNP [dm6]	C	A	5.187e^-4	0.984	SYNONYMOUS_CODING CG7441
2L	9467304	2L_9467304_SNP [dm3] 2L_9467304_SNP [dm6]	A	T	5.192e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8644346	2L_8644346_SNP [dm3] 2L_8644346_SNP [dm6]	G	C	5.206e^-4	0.984	INTRON Sema-1a
2L	11162383	2L_11162383_SNP [dm3] 2L_11162383_SNP [dm6]	T	C	5.209e^-4	0.984	SYNONYMOUS_CODING Ca-beta INTRON Ca-beta
3L	10141200	3L_10141200_SNP [dm3] 3L_10148100_SNP [dm6]	T	C	5.209e^-4	0.984	UTR_3_PRIME dpr10
3L	13293512	3L_13293512_SNP [dm3] 3L_13300412_SNP [dm6]	C	T	5.225e^-4	0.984	UPSTREAM CG43147 INTERGENIC
2L	21710098	2L_21710098_SNP [dm3] 2L_21710098_SNP [dm6]	C	T	5.233e^-4	0.984	INTRON CG31619	transposable element FlyBase
2R	19754480	2R_19754480_SNP [dm3] 2R_23866957_SNP [dm6]	A	G	5.242e^-4	0.984	SYNONYMOUS_CODING Thiolase DOWNSTREAM CG5569	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	14726734	3L_14726734_SNP [dm3] 3L_14733634_SNP [dm6]	G	A	5.243e^-4	0.984	UPSTREAM CG13471 INTRON ome
3L	15176422	3L_15176422_SNP [dm3] 3L_15183322_SNP [dm6]	G	T	5.256e^-4	0.984	INTERGENIC
3R	14176682	3R_14176682_SNP [dm3] 3R_18350960_SNP [dm6]	G	C	5.257e^-4	0.984	INTRON CG15803
2R	18250451	2R_18250451_SNP [dm3] 2R_22362946_SNP [dm6]	G	C	5.257e^-4	0.984	INTRON Liprin-gamma
2R	18250467	2R_18250467_SNP [dm3] 2R_22362962_SNP [dm6]	C	G	5.257e^-4	0.984	INTRON Liprin-gamma
3L	521551	3L_521551_INS [dm3] 3L_521551_INS [dm6]	C	CAACCACC	5.270e^-4	0.984	INTRON klar
2R	17027141	2R_17027141_SNP [dm3] 2R_21139636_SNP [dm6]	G	C	5.272e^-4	0.984	UTR_5_PRIME Magi INTRON Magi
3L	17897507	3L_17897507_SNP [dm3] 3L_17904407_SNP [dm6]	T	C	5.282e^-4	0.984	INTRON Prestin
2L	15645780	2L_15645780_SNP [dm3] 2L_15645780_SNP [dm6]	T	C	5.308e^-4	0.984	UTR_3_PRIME CG4587 DOWNSTREAM CG4587
3L	10486241	3L_10486241_SNP [dm3] 3L_10493141_SNP [dm6]	G	A	5.312e^-4	0.984	DOWNSTREAM S-Lap4 INTRON A2bp1	TF binding site mE1_TFBS_inv
3L	11590642	3L_11590642_SNP [dm3] 3L_11597542_SNP [dm6]	T	A	5.315e^-4	0.984	INTRON CG7368
X	19391019	X_19391019_DEL [dm3] X_19496986_DEL [dm6]	ACA	A	5.319e^-4	0.984	INTRON Pfrx & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	14946433	2R_14946433_SNP [dm3] 2R_19058928_SNP [dm6]	G	C	5.340e^-4	0.984	UPSTREAM CG15109 INTERGENIC
3L	7638290	3L_7638290_SNP [dm3] 3L_7645190_SNP [dm6]	G	C	5.357e^-4	0.984	INTERGENIC
2L	2785394	2L_2785394_SNP [dm3] 2L_2785394_SNP [dm6]	T	A	5.358e^-4	0.984	UTR_3_PRIME Syt1 INTRON Syt1
3R	15208443	3R_15208443_SNP [dm3] 3R_19382721_SNP [dm6]	G	A	5.365e^-4	0.984	INTRON Ino80
3L	8012819	3L_8012819_SNP [dm3] 3L_8019719_SNP [dm6]	C	T	5.372e^-4	0.984	INTRON nmo
3L	18794507	3L_18794507_SNP [dm3] 3L_18801407_SNP [dm6]	A	C	5.374e^-4	0.984	UPSTREAM ftz-f1 DOWNSTREAM CG14073 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	20792034	X_20792034_SNP [dm3] X_20921007_SNP [dm6]	C	T	5.383e^-4	0.984	INTRON shakB
2R	11156104	2R_11156104_SNP [dm3] 2R_15268599_SNP [dm6]	T	G	5.386e^-4	0.984	INTRON Trpm
3L	7944812	3L_7944812_SNP [dm3] 3L_7951712_SNP [dm6]	G	A	5.395e^-4	0.984	DOWNSTREAM exex INTERGENIC
3R	5697996	3R_5697996_SNP [dm3] 3R_9872274_SNP [dm6]	A	T	5.423e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	11106490	3R_11106490_SNP [dm3] 3R_15280768_SNP [dm6]	G	A	5.427e^-4	0.984	UPSTREAM Tm1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3L	12670737	3L_12670737_SNP [dm3] 3L_12677637_SNP [dm6]	C	T	5.429e^-4	0.984	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14357290	2L_14357290_SNP [dm3] 2L_14357290_SNP [dm6]	A	C	5.431e^-4	0.984	UTR_5_PRIME Rab14 UPSTREAM CR44851 INTRON Rab14
3R	918152	3R_918152_DEL [dm3] 3R_5092430_DEL [dm6]	ACGCT	A	5.433e^-4	0.984	INTERGENIC
3L	14539902	3L_14539902_SNP [dm3] 3L_14546802_SNP [dm6]	G	A	5.435e^-4	0.984	INTRON CG9238	TF binding site BDTNP1_TFBS_Med
3L	7638292	3L_7638292_SNP [dm3] 3L_7645192_SNP [dm6]	A	T	5.460e^-4	0.984	INTERGENIC
X	16065476	X_16065476_SNP [dm3] X_16171443_SNP [dm6]	T	C	5.468e^-4	0.984	INTERGENIC
3R	14029633	3R_14029633_SNP [dm3] 3R_18203911_SNP [dm6]	T	G	5.470e^-4	0.984	INTRON CG7985
3L	1285321	3L_1285321_SNP [dm3] 3L_1285321_SNP [dm6]	T	C	5.476e^-4	0.984	INTRON CG32333
3R	22089907	3R_22089907_SNP [dm3] 3R_26264185_SNP [dm6]	C	T	5.491e^-4	0.984	INTRON CG6154
3R	22089943	3R_22089943_SNP [dm3] 3R_26264221_SNP [dm6]	A	T	5.491e^-4	0.984	INTRON CG6154
3R	22089948	3R_22089948_SNP [dm3] 3R_26264226_SNP [dm6]	C	A	5.491e^-4	0.984	INTRON CG6154
3R	22089951	3R_22089951_SNP [dm3] 3R_26264229_SNP [dm6]	G	C	5.491e^-4	0.984	INTRON CG6154
3R	22089991	3R_22089991_SNP [dm3] 3R_26264269_SNP [dm6]	A	T	5.491e^-4	0.984	INTRON CG6154
3R	25043800	3R_25043800_DEL [dm3] 3R_29218078_DEL [dm6]	TAATCTATTTACAAT...	T	5.492e^-4	0.984	DOWNSTREAM mir-996 INTRON CR31044 EXON CR31044	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12579039	3L_12579039_SNP [dm3] 3L_12585939_SNP [dm6]	C	T	5.499e^-4	0.984	SYNONYMOUS_CODING ara	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22365937	3L_22365937_SNP [dm3] 3L_22372837_SNP [dm6]	G	T	5.499e^-4	0.984	INTRON Ten-m	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	13990772	3L_13990772_SNP [dm3] 3L_13997672_SNP [dm6]	G	T	5.504e^-4	0.984	NON_SYNONYMOUS_CODING CG17361 DOWNSTREAM CG17359	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11807484	2L_11807484_SNP [dm3] 2L_11807484_SNP [dm6]	C	T	5.506e^-4	0.984	INTRON crol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	5699974	2R_5699974_SNP [dm3] 2R_9812469_SNP [dm6]	G	T	5.517e^-4	0.984	INTRON CG1648
2R	12171896	2R_12171896_SNP [dm3] 2R_16284391_SNP [dm6]	C	A	5.524e^-4	0.984	NON_SYNONYMOUS_CODING CG9068	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	19818310	2L_19818310_INS [dm3] 2L_19818310_INS [dm6]	T	TAT	5.525e^-4	0.984	INTRON sick	transposable element FlyBase
2L	4659746	2L_4659746_SNP [dm3] 2L_4659746_SNP [dm6]	C	G	5.538e^-4	0.984	INTERGENIC
2L	4048579	2L_4048579_SNP [dm3] 2L_4048579_SNP [dm6]	C	T	5.542e^-4	0.984	INTRON ed
2R	8410923	2R_8410923_SNP [dm3] 2R_12523418_SNP [dm6]	A	G	5.544e^-4	0.984	DOWNSTREAM CG33632 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11869990	3R_11869990_SNP [dm3] 3R_16044268_SNP [dm6]	T	C	5.546e^-4	0.984	DOWNSTREAM CG10407 INTRON CG10264
2R	13689295	2R_13689295_SNP [dm3] 2R_17801790_SNP [dm6]	C	T	5.546e^-4	0.984	UTR_5_PRIME grh UPSTREAM CR45270 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	15584597	X_15584597_SNP [dm3] X_15690564_SNP [dm6]	G	T	5.562e^-4	0.984	INTRON CG43132	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17872815	X_17872815_SNP [dm3] X_17978782_SNP [dm6]	G	C	5.562e^-4	0.984	INTRON Sh
3R	21608210	3R_21608210_SNP [dm3] 3R_25782488_SNP [dm6]	G	T	5.568e^-4	0.984	INTERGENIC
2R	17903954	2R_17903954_SNP [dm3] 2R_22016449_SNP [dm6]	G	A	5.574e^-4	0.984	INTRON CG34370
X	11125338	X_11125338_SNP [dm3] X_11231305_SNP [dm6]	T	G	5.581e^-4	0.984	INTRON CG44422
3R	6620490	3R_6620490_SNP [dm3] 3R_10794768_SNP [dm6]	C	G	5.590e^-4	0.984	SYNONYMOUS_CODING CG14692
2R	9687799	2R_9687799_SNP [dm3] 2R_13800294_SNP [dm6]	C	G	5.592e^-4	0.984	INTRON Cpr50Cb
2R	6089561	2R_6089561_SNP [dm3] 2R_10202056_SNP [dm6]	C	T	5.596e^-4	0.984	INTERGENIC
2R	4899622	2R_4899622_SNP [dm3] 2R_9012117_SNP [dm6]	G	A	5.602e^-4	0.984	UPSTREAM CG8172 INTRON CG8172
X	10802668	X_10802668_SNP [dm3] X_10908635_SNP [dm6]	G	A	5.618e^-4	0.984	NON_SYNONYMOUS_CODING CG43901	TF binding site BDTNP1_TFBS_sna
3R	11098694	3R_11098694_SNP [dm3] 3R_15272972_SNP [dm6]	T	C	5.636e^-4	0.984	SYNONYMOUS_CODING Cp190	TF binding site mE1_TFBS_sens
2R	12053513	2R_12053513_SNP [dm3] 2R_16166008_SNP [dm6]	C	T	5.640e^-4	0.984	SPLICE_SITE_REGION lbk INTRON lbk
2L	11799888	2L_11799888_SNP [dm3] 2L_11799888_SNP [dm6]	C	A	5.650e^-4	0.984	INTRON crol	TF binding site mE1_TFBS_cad
2L	9891533	2L_9891533_SNP [dm3] 2L_9891533_SNP [dm6]	A	G	5.651e^-4	0.984	SYNONYMOUS_CODING mtDNA-helicase UPSTREAM CG34183 DOWNSTREAM CG4537	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12537222	3L_12537222_SNP [dm3] 3L_12544122_SNP [dm6]	T	C	5.653e^-4	0.984	INTRON sowah	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12537224	3L_12537224_MNP [dm3] 3L_12544124_MNP [dm6]	GCC	ATT	5.653e^-4	0.984	INTRON sowah	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9567448	3R_9567448_SNP [dm3] 3R_13741726_SNP [dm6]	A	T	5.654e^-4	0.984	INTRON CG34383
3L	19275758	3L_19275758_SNP [dm3] 3L_19282658_SNP [dm6]	T	C	5.659e^-4	0.984	UTR_3_PRIME Gbs-76A
X	5390306	X_5390306_SNP [dm3] X_5496273_SNP [dm6]	C	T	5.677e^-4	0.984	UPSTREAM frma INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi
2R	14088600	2R_14088600_SNP [dm3] 2R_18201095_SNP [dm6]	G	T	5.679e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11799557	2L_11799557_SNP [dm3] 2L_11799557_SNP [dm6]	T	A	5.699e^-4	0.984	INTRON crol	TF binding site mE1_TFBS_cad
3L	15319002	3L_15319002_SNP [dm3] 3L_15325902_SNP [dm6]	T	A	5.718e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22089901	3R_22089901_SNP [dm3] 3R_26264179_SNP [dm6]	T	A	5.724e^-4	0.984	INTRON CG6154
3L	5740815	3L_5740815_SNP [dm3] 3L_5747715_SNP [dm6]	G	A	5.735e^-4	0.984	UTR_3_PRIME sif
3L	16915120	3L_16915120_SNP [dm3] 3L_16922020_SNP [dm6]	A	C	5.740e^-4	0.984	UTR_3_PRIME Lmpt
3L	8445951	3L_8445951_SNP [dm3] 3L_8452851_SNP [dm6]	A	T	5.742e^-4	0.984	INTRON Gug	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	21829193	3L_21829193_SNP [dm3] 3L_21836093_SNP [dm6]	T	A	5.764e^-4	0.984	SYNONYMOUS_CODING Nopp140 UTR_3_PRIME Nopp140 DOWNSTREAM P5CDh1
3R	21448619	3R_21448619_INS [dm3] 3R_25622897_INS [dm6]	A	AT	5.767e^-4	0.984	SPLICE_SITE_REGION Npl4 INTRON Npl4	TF binding site mE1_TFBS_sens
2R	9661994	2R_9661994_SNP [dm3] 2R_13774489_SNP [dm6]	G	A	5.770e^-4	0.984	SYNONYMOUS_CODING Cpr50Ca	TF binding site mE1_TFBS_chinmo
2R	9662012	2R_9662012_SNP [dm3] 2R_13774507_SNP [dm6]	C	T	5.770e^-4	0.984	SYNONYMOUS_CODING Cpr50Ca	TF binding site mE1_TFBS_chinmo
2R	6362378	2R_6362378_SNP [dm3] 2R_10474873_SNP [dm6]	T	G	5.784e^-4	0.984	INTRON whd
2R	5116391	2R_5116391_SNP [dm3] 2R_9228886_SNP [dm6]	G	A	5.788e^-4	0.984	UTR_3_PRIME hig INTRON hig	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10526851	3R_10526851_SNP [dm3] 3R_14701129_SNP [dm6]	C	A	5.794e^-4	0.984	SYNONYMOUS_CODING kibra	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	5245617	X_5245617_SNP [dm3] X_5351584_SNP [dm6]	T	G	5.797e^-4	0.984	INTRON SK
X	5245657	X_5245657_SNP [dm3] X_5351624_SNP [dm6]	A	C	5.797e^-4	0.984	INTRON SK
X	5245681	X_5245681_SNP [dm3] X_5351648_SNP [dm6]	T	C	5.797e^-4	0.984	INTRON SK
X	17976757	X_17976757_SNP [dm3] X_18082724_SNP [dm6]	T	G	5.799e^-4	0.984	INTRON CG7536
2R	5699497	2R_5699497_SNP [dm3] 2R_9811992_SNP [dm6]	G	A	5.813e^-4	0.984	INTRON CG1648
3L	17882432	3L_17882432_SNP [dm3] 3L_17889332_SNP [dm6]	C	T	5.826e^-4	0.984	SPLICE_SITE_REGION CG7402 UTR_5_PRIME CG7402
3R	16938197	3R_16938197_SNP [dm3] 3R_21112475_SNP [dm6]	C	A	5.831e^-4	0.984	INTRON Rab11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	16303513	3R_16303513_SNP [dm3] 3R_20477791_SNP [dm6]	T	C	5.854e^-4	0.984	INTRON Gfrl
2R	19281746	2R_19281746_SNP [dm3] 2R_23394223_SNP [dm6]	A	T	5.870e^-4	0.984	INTRON CG3530	TF binding site mE1_TFBS_chinmo
3L	12976374	3L_12976374_SNP [dm3] 3L_12983274_SNP [dm6]	C	G	5.879e^-4	0.984	INTERGENIC
2R	13163712	2R_13163712_SNP [dm3] 2R_17276207_SNP [dm6]	T	G	5.892e^-4	0.984	INTRON mbl
3L	17883828	3L_17883828_SNP [dm3] 3L_17890728_SNP [dm6]	G	A	5.898e^-4	0.984	NON_SYNONYMOUS_CODING CG7402
3L	17844321	3L_17844321_SNP [dm3] 3L_17851221_SNP [dm6]	A	T	5.900e^-4	0.984	SYNONYMOUS_CODING CG7441
2L	9891531	2L_9891531_SNP [dm3] 2L_9891531_SNP [dm6]	C	A	5.902e^-4	0.984	NON_SYNONYMOUS_CODING mtDNA-helicase UPSTREAM CG34183 DOWNSTREAM CG4537	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	893967	X_893967_SNP [dm3] X_999934_SNP [dm6]	C	G	5.903e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3003716	3L_3003716_INS [dm3] 3L_3003716_INS [dm6]	A	ATATTCACAT	5.912e^-4	0.984	UTR_5_PRIME FMRFaR INTRON FMRFaR
2R	18422819	2R_18422819_SNP [dm3] 2R_22535314_SNP [dm6]	G	C	5.913e^-4	0.984	INTRON px
2L	17133095	2L_17133095_SNP [dm3] 2L_17133095_SNP [dm6]	T	A	5.916e^-4	0.984	INTRON beat-IIIa & 1 other
2R	19646476	2R_19646476_SNP [dm3] 2R_23758953_SNP [dm6]	C	T	5.917e^-4	0.984	INTRON CG9850	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	3011965	2L_3011965_SNP [dm3] 2L_3011965_SNP [dm6]	G	A	5.932e^-4	0.984	INTRON CG17265	TF binding site mE1_TFBS_inv
3L	1590239	3L_1590239_SNP [dm3] 3L_1590239_SNP [dm6]	C	T	5.943e^-4	0.984	INTRON CG13917
3L	3722081	3L_3722081_SNP [dm3] 3L_3722081_SNP [dm6]	G	A	5.943e^-4	0.984	INTRON CG32264
X	3910610	X_3910610_SNP [dm3] X_4016577_SNP [dm6]	T	C	5.948e^-4	0.984	INTERGENIC
3L	21841584	3L_21841584_SNP [dm3] 3L_21848484_SNP [dm6]	T	C	5.961e^-4	0.984	INTRON mub
2R	18866256	2R_18866256_SNP [dm3] 2R_22978733_SNP [dm6]	A	G	5.967e^-4	0.984	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	13549760	3L_13549760_SNP [dm3] 3L_13556660_SNP [dm6]	A	G	5.980e^-4	0.984	INTRON bru-3
3L	9848706	3L_9848706_SNP [dm3] 3L_9855606_SNP [dm6]	T	G	6.006e^-4	0.984	UPSTREAM RasGAP1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3L	12290911	3L_12290911_SNP [dm3] 3L_12297811_SNP [dm6]	T	C	6.010e^-4	0.984	INTERGENIC	TF binding site mE1_TFBS_cad
X	12409296	X_12409296_SNP [dm3] X_12515263_SNP [dm6]	C	T	6.011e^-4	0.984	SYNONYMOUS_CODING CG2556	TF binding site mE1_TFBS_chinmo
3R	13913803	3R_13913803_SNP [dm3] 3R_18088081_SNP [dm6]	A	C	6.016e^-4	0.984	INTERGENIC
2R	11216750	2R_11216750_SNP [dm3] 2R_15329245_SNP [dm6]	G	T	6.021e^-4	0.984	UPSTREAM CG8160 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	25600904	3R_25600904_SNP [dm3] 3R_29775182_SNP [dm6]	A	T	6.025e^-4	0.984	INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	25600986	3R_25600986_SNP [dm3] 3R_29775264_SNP [dm6]	C	T	6.025e^-4	0.984	INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	9148671	2L_9148671_SNP [dm3] 2L_9148671_SNP [dm6]	A	T	6.039e^-4	0.984	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3663186	X_3663186_SNP [dm3] X_3769153_SNP [dm6]	C	G	6.040e^-4	0.984	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25373940	3R_25373940_SNP [dm3] 3R_29548218_SNP [dm6]	G	T	6.048e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	18403618	3R_18403618_INS [dm3] 3R_22577896_INS [dm6]	A	ATGCGATTTCCGTTTTCAAA...	6.050e^-4	0.984	INTRON CG33110
3L	1356345	3L_1356345_SNP [dm3] 3L_1356345_SNP [dm6]	C	T	6.053e^-4	0.984	INTRON Ptp61F	TF binding site mE1_TFBS_inv
2R	13722587	2R_13722587_SNP [dm3] 2R_17835082_SNP [dm6]	G	A	6.079e^-4	0.984	INTRON grh
2L	19504932	2L_19504932_SNP [dm3] 2L_19504932_SNP [dm6]	C	T	6.080e^-4	0.984	SYNONYMOUS_CODING CG10188	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	21900370	3L_21900370_SNP [dm3] 3L_21907270_SNP [dm6]	C	T	6.082e^-4	0.984	INTRON mub
3L	12088928	3L_12088928_SNP [dm3] 3L_12095828_SNP [dm6]	C	T	6.084e^-4	0.984	INTERGENIC
3L	8752505	3L_8752505_SNP [dm3] 3L_8759405_SNP [dm6]	C	A	6.088e^-4	0.984	INTRON Fhos
3R	10801922	3R_10801922_SNP [dm3] 3R_14976200_SNP [dm6]	A	G	6.088e^-4	0.984	INTERGENIC
3R	20186778	3R_20186778_SNP [dm3] 3R_24361056_SNP [dm6]	C	T	6.100e^-4	0.984	SYNONYMOUS_CODING CG5762 UPSTREAM CG18528 & 1 other
3R	6775281	3R_6775281_SNP [dm3] 3R_10949559_SNP [dm6]	G	A	6.104e^-4	0.984	UPSTREAM Tengl4 INTERGENIC
3L	3511528	3L_3511528_SNP [dm3] 3L_3511528_SNP [dm6]	G	C	6.115e^-4	0.984	NON_SYNONYMOUS_CODING ImpE2 DOWNSTREAM CG42324	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8435527	X_8435527_SNP [dm3] X_8541494_SNP [dm6]	G	T	6.122e^-4	0.984	INTRON Nrg
2R	9381316	2R_9381316_SNP [dm3] 2R_13493811_SNP [dm6]	T	G	6.123e^-4	0.984	INTRON bbc
2R	18249857	2R_18249857_SNP [dm3] 2R_22362352_SNP [dm6]	T	G	6.123e^-4	0.984	INTRON Liprin-gamma
2L	9891675	2L_9891675_SNP [dm3] 2L_9891675_SNP [dm6]	T	G	6.151e^-4	0.984	SYNONYMOUS_CODING mtDNA-helicase UPSTREAM CG34183 DOWNSTREAM CG4537	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11838314	X_11838314_INS [dm3] X_11944281_INS [dm6]	G	GTTG	6.157e^-4	0.984	INTRON cac
3L	8689966	3L_8689966_SNP [dm3] 3L_8696866_SNP [dm6]	C	A	6.158e^-4	0.984	INTERGENIC
3L	14238290	3L_14238290_SNP [dm3] 3L_14245190_SNP [dm6]	C	T	6.159e^-4	0.984	UPSTREAM CR44560 EXON CR44561
2L	9350347	2L_9350347_SNP [dm3] 2L_9350347_SNP [dm6]	G	A	6.178e^-4	0.984	UPSTREAM CG13110 DOWNSTREAM CG43350 INTERGENIC
X	19734680	X_19734680_SNP [dm3] X_19840647_SNP [dm6]	C	T	6.188e^-4	0.984	INTRON pico	TF binding site mE1_TFBS_HSA
3R	18862970	3R_18862970_SNP [dm3] 3R_23037248_SNP [dm6]	A	T	6.192e^-4	0.984	INTERGENIC
3L	9286407	3L_9286407_DEL [dm3] 3L_9293307_DEL [dm6]	CG	C	6.207e^-4	0.984	INTERGENIC
3L	3262885	3L_3262885_SNP [dm3] 3L_3262885_SNP [dm6]	A	G	6.212e^-4	0.984	INTRON ckd
3R	6767925	3R_6767925_SNP [dm3] 3R_10942203_SNP [dm6]	T	A	6.216e^-4	0.984	INTERGENIC
2L	10122066	2L_10122066_SNP [dm3] 2L_10122066_SNP [dm6]	T	C	6.220e^-4	0.984	DOWNSTREAM CG13135 INTRON CG44153 & 1 other
2R	11321962	2R_11321962_DEL [dm3] 2R_15434457_DEL [dm6]	TTAAA	T	6.222e^-4	0.984	INTRON CG43729	TF binding site mE1_TFBS_chinmo
2R	6956079	2R_6956079_SNP [dm3] 2R_11068574_SNP [dm6]	T	A	6.225e^-4	0.984	INTRON luna
3L	21904007	3L_21904007_SNP [dm3] 3L_21910907_SNP [dm6]	G	C	6.233e^-4	0.984	INTRON mub	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21904207	3L_21904207_SNP [dm3] 3L_21911107_SNP [dm6]	G	C	6.233e^-4	0.984	INTRON mub	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15301134	3R_15301134_SNP [dm3] 3R_19475412_SNP [dm6]	C	T	6.257e^-4	0.984	INTRON Dys	TF binding site mE1_TFBS_inv
2L	7224238	2L_7224238_SNP [dm3] 2L_7224238_SNP [dm6]	G	T	6.260e^-4	0.984	UTR_3_PRIME Ndae1 INTRON Ndae1
2L	7224239	2L_7224239_SNP [dm3] 2L_7224239_SNP [dm6]	G	A	6.260e^-4	0.984	UTR_3_PRIME Ndae1 INTRON Ndae1
2L	7224249	2L_7224249_SNP [dm3] 2L_7224249_SNP [dm6]	T	A	6.260e^-4	0.984	UTR_3_PRIME Ndae1 INTRON Ndae1
3R	10573783	3R_10573783_SNP [dm3] 3R_14748061_SNP [dm6]	G	A	6.277e^-4	0.984	UPSTREAM smp-30 INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
3L	7813783	3L_7813783_SNP [dm3] 3L_7820683_SNP [dm6]	A	G	6.285e^-4	0.984	INTRON Pdp1
2L	17107530	2L_17107530_SNP [dm3] 2L_17107530_SNP [dm6]	G	A	6.290e^-4	0.984	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	11442875	2L_11442875_DEL [dm3] 2L_11442875_DEL [dm6]	CAC	T	6.293e^-4	0.984	INTRON salm
2L	11442891	2L_11442891_SNP [dm3] 2L_11442891_SNP [dm6]	T	G	6.293e^-4	0.984	INTRON salm
2L	11442910	2L_11442910_INS [dm3] 2L_11442910_INS [dm6]	A	ATGGCTT	6.293e^-4	0.984	INTRON salm
X	12994399	X_12994399_SNP [dm3] X_13100366_SNP [dm6]	T	C	6.299e^-4	0.984	INTRON CG43313
3R	19200966	3R_19200966_INS [dm3] 3R_23375244_INS [dm6]	T	TAAT	6.300e^-4	0.984	DOWNSTREAM CG42828 & 1 other INTERGENIC
3R	19200969	3R_19200969_SNP [dm3] 3R_23375247_SNP [dm6]	T	A	6.300e^-4	0.984	DOWNSTREAM CG4393 INTERGENIC
3L	21829379	3L_21829379_SNP [dm3] 3L_21836279_SNP [dm6]	T	A	6.308e^-4	0.984	UTR_3_PRIME Nopp140 DOWNSTREAM P5CDh1
3L	17951750	3L_17951750_SNP [dm3] 3L_17958650_SNP [dm6]	C	T	6.325e^-4	0.984	INTRON Eip75B
2R	16955834	2R_16955834_SNP [dm3] 2R_21068329_SNP [dm6]	G	A	6.352e^-4	0.984	SYNONYMOUS_CODING Cht9 EXON CR44703	TF binding site mE1_TFBS_cad
3R	21328292	3R_21328292_SNP [dm3] 3R_25502570_SNP [dm6]	C	T	6.353e^-4	0.984	UPSTREAM CR43457 & 1 other EXON CR43456	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	8593040	3L_8593040_SNP [dm3] 3L_8599940_SNP [dm6]	A	G	6.354e^-4	0.984	SYNONYMOUS_CODING Nelf-E DOWNSTREAM CG43078
3L	1887676	3L_1887676_SNP [dm3] 3L_1887676_SNP [dm6]	T	C	6.363e^-4	0.984	INTRON Tmhs	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
X	18995728	X_18995728_SNP [dm3] X_19101695_SNP [dm6]	T	C	6.363e^-4	0.984	INTERGENIC
X	16243855	X_16243855_SNP [dm3] X_16349822_SNP [dm6]	G	C	6.371e^-4	0.984	UPSTREAM sl INTERGENIC	TF binding site mE1_TFBS_Ubx
3L	7633219	3L_7633219_SNP [dm3] 3L_7640119_SNP [dm6]	A	G	6.374e^-4	0.984	SPLICE_SITE_REGION CG33276 DOWNSTREAM CG33275 & 2 others INTRON CG33276	TF binding site mE1_TFBS_Ubx
3L	7827350	3L_7827350_SNP [dm3] 3L_7834250_SNP [dm6]	A	G	6.423e^-4	0.984	INTRON Pdp1	TF binding site mE1_TFBS_Trl
3L	5727826	3L_5727826_SNP [dm3] 3L_5734726_SNP [dm6]	G	T	6.436e^-4	0.984	INTRON sif
3R	12513916	3R_12513916_SNP [dm3] 3R_16688194_SNP [dm6]	G	C	6.442e^-4	0.984	INTRON Ubx	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad

Missing results

By genomic position
Variant impact
Gene name

pc_KP_PElem_HC phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results