DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.664e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1496 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	21968126	3L_21968126_SNP [dm3] 3L_21975026_SNP [dm6]	T	A	2.622e^-6	0.711	INTRON CG7470
3L	21968129	3L_21968129_SNP [dm3] 3L_21975029_SNP [dm6]	T	C	2.622e^-6	0.711	INTRON CG7470
3L	21968130	3L_21968130_SNP [dm3] 3L_21975030_SNP [dm6]	G	A	2.622e^-6	0.711	INTRON CG7470
2R	18600700	2R_18600700_SNP [dm3] 2R_22713195_SNP [dm6]	T	C	2.668e^-6	0.711	SYNONYMOUS_CODING CG30268 DOWNSTREAM CG30275
3L	21968433	3L_21968433_SNP [dm3] 3L_21975333_SNP [dm6]	A	G	4.100e^-6	0.711	INTRON CG7470
X	12388124	X_12388124_SNP [dm3] X_12494091_SNP [dm6]	C	G	5.152e^-6	0.711	DOWNSTREAM Mks1 INTERGENIC
X	12388126	X_12388126_SNP [dm3] X_12494093_SNP [dm6]	A	T	5.152e^-6	0.711	DOWNSTREAM Mks1 INTERGENIC
3R	13063145	3R_13063145_SNP [dm3] 3R_17237423_SNP [dm6]	T	C	5.496e^-6	0.711	INTRON beat-IIb
3L	7423041	3L_7423041_SNP [dm3] 3L_7429941_SNP [dm6]	G	A	5.725e^-6	0.711	INTRON CG42458	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
X	12388116	X_12388116_SNP [dm3] X_12494083_SNP [dm6]	G	A	6.222e^-6	0.711	DOWNSTREAM Mks1 INTERGENIC
2L	22099807	2L_22099807_SNP [dm3] 2L_22099807_SNP [dm6]	T	C	6.651e^-6	0.711	INTERGENIC
2L	22099816	2L_22099816_SNP [dm3] 2L_22099816_SNP [dm6]	C	A	6.651e^-6	0.711	INTERGENIC
2L	22099817	2L_22099817_SNP [dm3] 2L_22099817_SNP [dm6]	A	T	6.651e^-6	0.711	INTERGENIC
3L	18620796	3L_18620796_SNP [dm3] 3L_18627696_SNP [dm6]	T	A	6.754e^-6	0.711	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	2210081	3L_2210081_SNP [dm3] 3L_2210081_SNP [dm6]	T	C	6.850e^-6	0.711	DOWNSTREAM CG15878 INTERGENIC
3R	22527085	3R_22527085_SNP [dm3] 3R_26701363_SNP [dm6]	A	T	8.375e^-6	0.711	INTRON amon
3R	13780986	3R_13780986_DEL [dm3] 3R_17955264_DEL [dm6]	TT	T	8.607e^-6	0.711	INTRON cpo	TF binding site mE1_TFBS_cad
3L	11208027	3L_11208027_SNP [dm3] 3L_11214927_SNP [dm6]	A	G	9.384e^-6	0.711	UPSTREAM CG42671 DOWNSTREAM CG7600 INTRON CG42671	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_Kr mE1_TFBS_Trl
X	12387044	X_12387044_SNP [dm3] X_12493011_SNP [dm6]	G	T	9.424e^-6	0.711	DOWNSTREAM Lsp1alpha INTERGENIC
X	12387064	X_12387064_SNP [dm3] X_12493031_SNP [dm6]	G	T	9.424e^-6	0.711	DOWNSTREAM Lsp1alpha INTERGENIC
X	12387065	X_12387065_SNP [dm3] X_12493032_SNP [dm6]	C	T	9.424e^-6	0.711	DOWNSTREAM Lsp1alpha INTERGENIC
X	12387069	X_12387069_SNP [dm3] X_12493036_SNP [dm6]	T	G	9.424e^-6	0.711	DOWNSTREAM Lsp1alpha INTERGENIC
X	12387073	X_12387073_SNP [dm3] X_12493040_SNP [dm6]	A	T	9.424e^-6	0.711	DOWNSTREAM Lsp1alpha INTERGENIC
X	12387047	X_12387047_SNP [dm3] X_12493014_SNP [dm6]	A	C	1.105e^-5	0.711	DOWNSTREAM Lsp1alpha INTERGENIC
3L	17909708	3L_17909708_SNP [dm3] 3L_17916608_SNP [dm6]	A	G	1.185e^-5	0.711	INTERGENIC
3L	17908064	3L_17908064_SNP [dm3] 3L_17914964_SNP [dm6]	A	G	1.207e^-5	0.711	INTERGENIC
3L	17908077	3L_17908077_SNP [dm3] 3L_17914977_SNP [dm6]	C	A	1.207e^-5	0.711	INTERGENIC
3L	12282638	3L_12282638_SNP [dm3] 3L_12289538_SNP [dm6]	A	T	1.243e^-5	0.711	EXON CR45658
3L	12282646	3L_12282646_SNP [dm3] 3L_12289546_SNP [dm6]	G	T	1.243e^-5	0.711	EXON CR45658
3L	12282655	3L_12282655_SNP [dm3] 3L_12289555_SNP [dm6]	G	T	1.243e^-5	0.711	EXON CR45658
3L	8206920	3L_8206920_SNP [dm3] 3L_8213820_SNP [dm6]	T	A	1.277e^-5	0.711	DOWNSTREAM CG8006 INTERGENIC
3L	12179891	3L_12179891_SNP [dm3] 3L_12186791_SNP [dm6]	C	A	1.286e^-5	0.711	SYNONYMOUS_CODING CG6910	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	3753167	X_3753167_SNP [dm3] X_3859134_SNP [dm6]	A	G	1.324e^-5	0.711	EXON roX1
3L	11208193	3L_11208193_SNP [dm3] 3L_11215093_SNP [dm6]	C	G	1.342e^-5	0.711	UPSTREAM CG42671 DOWNSTREAM CG7600 INTRON CG42671	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_Kr mE1_TFBS_Trl
3R	26011106	3R_26011106_SNP [dm3] 3R_30185384_SNP [dm6]	G	A	1.386e^-5	0.711	UPSTREAM CR44262 DOWNSTREAM CG9747 INTERGENIC
3L	21968136	3L_21968136_DEL [dm3] 3L_21975036_DEL [dm6]	AA	A	1.408e^-5	0.711	INTRON CG7470
2L	7558758	2L_7558758_SNP [dm3] 2L_7558758_SNP [dm6]	C	T	1.524e^-5	0.711	INTRON RapGAP1
3R	13063674	3R_13063674_SNP [dm3] 3R_17237952_SNP [dm6]	C	A	1.552e^-5	0.711	INTRON beat-IIb
2L	13710150	2L_13710150_SNP [dm3] 2L_13710150_SNP [dm6]	G	C	1.555e^-5	0.711	NON_SYNONYMOUS_CODING CG7311 UTR_3_PRIME CG7311 INTRON CG31814	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5866010	2L_5866010_SNP [dm3] 2L_5866010_SNP [dm6]	T	C	1.566e^-5	0.711	INTRON rau
3R	25134623	3R_25134623_SNP [dm3] 3R_29308901_SNP [dm6]	C	T	1.604e^-5	0.711	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	10998820	2R_10998820_SNP [dm3] 2R_15111315_SNP [dm6]	A	G	1.722e^-5	0.729	INTERGENIC
2L	8010395	2L_8010395_SNP [dm3] 2L_8010395_SNP [dm6]	A	C	1.786e^-5	0.729	UPSTREAM CG12560 INTRON CG34010	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	17904485	3L_17904485_SNP [dm3] 3L_17911385_SNP [dm6]	T	G	1.800e^-5	0.729	SYNONYMOUS_CODING CG5290	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	659647	3L_659647_SNP [dm3] 3L_659647_SNP [dm6]	T	C	1.809e^-5	0.729	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	9314780	2R_9314780_SNP [dm3] 2R_13427275_SNP [dm6]	G	A	1.845e^-5	0.729	INTRON CG42321	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	12387048	X_12387048_SNP [dm3] X_12493015_SNP [dm6]	A	T	1.931e^-5	0.741	DOWNSTREAM Lsp1alpha INTERGENIC
2R	5285409	2R_5285409_SNP [dm3] 2R_9397904_SNP [dm6]	G	A	2.012e^-5	0.741	SYNONYMOUS_CODING CG8801	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12388723	X_12388723_SNP [dm3] X_12494690_SNP [dm6]	A	G	2.024e^-5	0.741	SYNONYMOUS_CODING Mks1
3L	10396223	3L_10396223_INS [dm3] 3L_10403123_INS [dm6]	G	GA	2.040e^-5	0.741	INTERGENIC
3L	17886042	3L_17886042_SNP [dm3] 3L_17892942_SNP [dm6]	G	A	2.141e^-5	0.749	INTRON Tsp74F	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	4774003	X_4774003_SNP [dm3] X_4879970_SNP [dm6]	T	C	2.255e^-5	0.749	INTRON CG42594
3R	23749545	3R_23749545_SNP [dm3] 3R_27923823_SNP [dm6]	A	T	2.279e^-5	0.749	UPSTREAM snoRNA:Or-aca3 INTRON RpL4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	505775	3L_505775_SNP [dm3] 3L_505775_SNP [dm6]	C	A	2.509e^-5	0.749	INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	12282654	3L_12282654_SNP [dm3] 3L_12289554_SNP [dm6]	C	G	2.520e^-5	0.749	EXON CR45658
3L	17905541	3L_17905541_SNP [dm3] 3L_17912441_SNP [dm6]	G	T	2.564e^-5	0.749	UTR_5_PRIME CG5290	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3L	17905773	3L_17905773_SNP [dm3] 3L_17912673_SNP [dm6]	A	T	2.564e^-5	0.749	UPSTREAM CG5290 INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2R	8129061	2R_8129061_SNP [dm3] 2R_12241556_SNP [dm6]	A	G	2.598e^-5	0.749	UPSTREAM CG43316 DOWNSTREAM CG13170 INTRON CG43315
2R	8129062	2R_8129062_SNP [dm3] 2R_12241557_SNP [dm6]	T	A	2.598e^-5	0.749	UPSTREAM CG43316 DOWNSTREAM CG13170 INTRON CG43315
X	20431728	X_20431728_SNP [dm3] X_20560701_SNP [dm6]	G	A	2.610e^-5	0.749	INTRON RunxB
3L	8012180	3L_8012180_SNP [dm3] 3L_8019080_SNP [dm6]	A	G	2.703e^-5	0.749	INTRON nmo
3R	13063983	3R_13063983_SNP [dm3] 3R_17238261_SNP [dm6]	A	G	2.711e^-5	0.749	INTRON beat-IIb
3L	11237468	3L_11237468_SNP [dm3] 3L_11244368_SNP [dm6]	T	C	2.749e^-5	0.749	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
X	3753160	X_3753160_SNP [dm3] X_3859127_SNP [dm6]	C	A	2.765e^-5	0.749	EXON roX1
2L	7559398	2L_7559398_SNP [dm3] 2L_7559398_SNP [dm6]	A	T	2.781e^-5	0.749	INTRON RapGAP1
2L	7559404	2L_7559404_SNP [dm3] 2L_7559404_SNP [dm6]	T	A	2.781e^-5	0.749	INTRON RapGAP1
2L	7559419	2L_7559419_SNP [dm3] 2L_7559419_SNP [dm6]	T	A	2.781e^-5	0.749	INTRON RapGAP1
2L	10111671	2L_10111671_SNP [dm3] 2L_10111671_SNP [dm6]	T	C	2.803e^-5	0.749	INTRON CG44153 & 1 other
3L	17909904	3L_17909904_SNP [dm3] 3L_17916804_SNP [dm6]	A	G	2.850e^-5	0.749	INTERGENIC
2L	5866536	2L_5866536_SNP [dm3] 2L_5866536_SNP [dm6]	A	G	2.887e^-5	0.749	INTRON rau	TF binding site BDTNP1_TFBS_da
3R	5720560	3R_5720560_DEL [dm3] 3R_9894838_DEL [dm6]	CCCAGTTTTGAAATCGC...	C	3.014e^-5	0.769	INTRON Glut4EF	TF binding site mE1_TFBS_inv
2L	3018605	2L_3018605_SNP [dm3] 2L_3018605_SNP [dm6]	A	T	3.131e^-5	0.769	START_GAINED CG17264 UTR_5_PRIME CG17264 UPSTREAM CG17264 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3018613	2L_3018613_SNP [dm3] 2L_3018613_SNP [dm6]	T	A	3.131e^-5	0.769	UTR_5_PRIME CG17264 UPSTREAM CG17264 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3018621	2L_3018621_SNP [dm3] 2L_3018621_SNP [dm6]	A	G	3.131e^-5	0.769	UTR_5_PRIME CG17264 UPSTREAM CG17264 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12388447	X_12388447_DEL [dm3] X_12494414_DEL [dm6]	TA	T	3.306e^-5	0.801	UTR_3_PRIME Mks1
2R	13856870	2R_13856870_SNP [dm3] 2R_17969365_SNP [dm6]	C	T	3.396e^-5	0.811	INTERGENIC
2R	6114693	2R_6114693_SNP [dm3] 2R_10227188_SNP [dm6]	G	A	3.440e^-5	0.811	INTRON Hr46 & 1 other	TF binding site mE1_TFBS_Trl
2R	7359258	2R_7359258_INS [dm3] 2R_11471753_INS [dm6]	A	TATAT	3.510e^-5	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	12282614	3L_12282614_SNP [dm3] 3L_12289514_SNP [dm6]	C	T	3.525e^-5	0.811	EXON CR45658
2R	4662137	2R_4662137_SNP [dm3] 2R_8774632_SNP [dm6]	A	C	3.970e^-5	0.882	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4368139	3L_4368139_SNP [dm3] 3L_4368139_SNP [dm6]	T	A	3.981e^-5	0.882	UTR_3_PRIME DopEcR UPSTREAM CG11342 DOWNSTREAM DopEcR	TF binding site mE1_TFBS_sens
3L	4368154	3L_4368154_SNP [dm3] 3L_4368154_SNP [dm6]	T	A	3.981e^-5	0.882	UTR_3_PRIME DopEcR UPSTREAM CG11342 DOWNSTREAM DopEcR	TF binding site mE1_TFBS_sens
3R	13789861	3R_13789861_SNP [dm3] 3R_17964139_SNP [dm6]	C	A	4.087e^-5	0.893	INTRON cpo
2R	6139671	2R_6139671_SNP [dm3] 2R_10252166_SNP [dm6]	A	T	4.130e^-5	0.893	UTR_5_PRIME Syb INTRON CG12913 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2R	14498690	2R_14498690_DEL [dm3] 2R_18611185_DEL [dm6]	TACGGA	T	4.260e^-5	0.911	UTR_5_PRIME GEFmeso DOWNSTREAM CG42697	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
X	4839708	X_4839708_SNP [dm3] X_4945675_SNP [dm6]	C	G	4.360e^-5	0.921	INTRON Ptp4E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	3440719	3R_3440719_SNP [dm3] 3R_7614997_SNP [dm6]	C	T	4.432e^-5	0.925	INTRON CG34127
3L	761571	3L_761571_SNP [dm3] 3L_761571_SNP [dm6]	A	G	4.686e^-5	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med
2L	8010057	2L_8010057_SNP [dm3] 2L_8010057_SNP [dm6]	C	A	4.768e^-5	0.946	SYNONYMOUS_CODING CG34010 UPSTREAM CG12560	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3R	19572363	3R_19572363_SNP [dm3] 3R_23746641_SNP [dm6]	G	A	4.782e^-5	0.946	INTRON Hmgcr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10086031	2R_10086031_SNP [dm3] 2R_14198526_SNP [dm6]	T	C	4.790e^-5	0.946	UTR_3_PRIME VGAT DOWNSTREAM CG30069
2R	18292034	2R_18292034_SNP [dm3] 2R_22404529_SNP [dm6]	C	T	4.800e^-5	0.946	INTRON CG6044	TF binding site BDTNP1_TFBS_dl
2L	8010187	2L_8010187_SNP [dm3] 2L_8010187_SNP [dm6]	C	A	4.841e^-5	0.946	NON_SYNONYMOUS_CODING CG34010 UPSTREAM CG12560	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	5214920	X_5214920_SNP [dm3] X_5320887_SNP [dm6]	G	A	5.075e^-5	0.974	SYNONYMOUS_CODING Rnp4F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	9314848	2R_9314848_SNP [dm3] 2R_13427343_SNP [dm6]	C	G	5.159e^-5	0.974	INTRON CG42321	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	17902944	3L_17902944_SNP [dm3] 3L_17909844_SNP [dm6]	A	G	5.422e^-5	0.974	NON_SYNONYMOUS_CODING CG5290 DOWNSTREAM CG14353
2L	5121453	2L_5121453_SNP [dm3] 2L_5121453_SNP [dm6]	A	T	5.692e^-5	0.974	INTRON Msp300
3R	13062827	3R_13062827_SNP [dm3] 3R_17237105_SNP [dm6]	T	A	5.737e^-5	0.974	INTRON beat-IIb
3R	17844184	3R_17844184_SNP [dm3] 3R_22018462_SNP [dm6]	A	C	5.745e^-5	0.974	INTRON CG6439	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11208359	3L_11208359_SNP [dm3] 3L_11215259_SNP [dm6]	C	G	5.822e^-5	0.974	UPSTREAM CG42671 INTRON CG42671	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_Kr mE1_TFBS_Trl
3L	9309606	3L_9309606_SNP [dm3] 3L_9316506_SNP [dm6]	C	G	5.874e^-5	0.974	INTERGENIC
3L	2210152	3L_2210152_SNP [dm3] 3L_2210152_SNP [dm6]	A	G	5.891e^-5	0.974	DOWNSTREAM CG15878 INTERGENIC
3L	9085129	3L_9085129_SNP [dm3] 3L_9092029_SNP [dm6]	A	G	5.905e^-5	0.974	UTR_3_PRIME Tequila
3L	4658253	3L_4658253_SNP [dm3] 3L_4658253_SNP [dm6]	T	C	5.927e^-5	0.974	INTRON axo
2R	13856962	2R_13856962_SNP [dm3] 2R_17969457_SNP [dm6]	G	C	5.982e^-5	0.974	INTERGENIC
3L	17902945	3L_17902945_SNP [dm3] 3L_17909845_SNP [dm6]	T	G	6.004e^-5	0.974	SYNONYMOUS_CODING CG5290 DOWNSTREAM CG14353
2R	6746350	2R_6746350_SNP [dm3] 2R_10858845_SNP [dm6]	T	G	6.206e^-5	0.974	UPSTREAM CR44302 INTRON CG30015
3L	21853239	3L_21853239_SNP [dm3] 3L_21860139_SNP [dm6]	G	T	6.248e^-5	0.974	INTRON mub	TF binding site mE1_TFBS_inv
2L	5846901	2L_5846901_SNP [dm3] 2L_5846901_SNP [dm6]	C	G	6.266e^-5	0.974	INTRON TrissinR
3L	8392724	3L_8392724_SNP [dm3] 3L_8399624_SNP [dm6]	C	T	6.310e^-5	0.974	INTRON CG7120	TF binding site mE1_TFBS_cad
2R	9314829	2R_9314829_SNP [dm3] 2R_13427324_SNP [dm6]	G	T	6.428e^-5	0.974	INTRON CG42321	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	13351657	X_13351657_SNP [dm3] X_13457624_SNP [dm6]	A	G	6.482e^-5	0.974	UTR_5_PRIME CG34324 INTRON Neto
3L	6510923	3L_6510923_SNP [dm3] 3L_6517823_SNP [dm6]	G	A	6.504e^-5	0.974	INTRON sfl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10313298	2R_10313298_SNP [dm3] 2R_14425793_SNP [dm6]	A	T	6.580e^-5	0.974	INTERGENIC
2R	18294779	2R_18294779_SNP [dm3] 2R_22407274_SNP [dm6]	C	G	6.609e^-5	0.974	NON_SYNONYMOUS_CODING CG6044	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	7559183	2L_7559183_SNP [dm3] 2L_7559183_SNP [dm6]	C	A	6.724e^-5	0.974	INTRON RapGAP1
3R	11551504	3R_11551504_SNP [dm3] 3R_15725782_SNP [dm6]	T	C	6.847e^-5	0.974	INTERGENIC
2R	6114691	2R_6114691_SNP [dm3] 2R_10227186_SNP [dm6]	C	G	6.911e^-5	0.974	INTRON Hr46 & 1 other	TF binding site mE1_TFBS_Trl
2R	16984873	2R_16984873_SNP [dm3] 2R_21097368_SNP [dm6]	T	C	6.990e^-5	0.974	UPSTREAM CG34396 & 1 other INTRON CG34396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11205698	3L_11205698_SNP [dm3] 3L_11212598_SNP [dm6]	G	A	7.012e^-5	0.974	SYNONYMOUS_CODING CG7600	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5121455	2L_5121455_SNP [dm3] 2L_5121455_SNP [dm6]	T	A	7.022e^-5	0.974	INTRON Msp300
3L	8079688	3L_8079688_SNP [dm3] 3L_8086588_SNP [dm6]	G	A	7.137e^-5	0.974	INTRON Ect4	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2R	13856873	2R_13856873_SNP [dm3] 2R_17969368_SNP [dm6]	G	A	7.168e^-5	0.974	INTERGENIC
2L	15325079	2L_15325079_SNP [dm3] 2L_15325079_SNP [dm6]	A	G	7.177e^-5	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	13230617	2R_13230617_SNP [dm3] 2R_17343112_SNP [dm6]	A	G	7.339e^-5	0.974	INTRON mbl
3L	17906928	3L_17906928_SNP [dm3] 3L_17913828_SNP [dm6]	T	C	7.437e^-5	0.974	INTERGENIC	TF binding site mE1_TFBS_inv
2L	12034433	2L_12034433_SNP [dm3] 2L_12034433_SNP [dm6]	G	T	7.638e^-5	0.974	NON_SYNONYMOUS_CODING CG18788 DOWNSTREAM dmGlut
2L	12034452	2L_12034452_SNP [dm3] 2L_12034452_SNP [dm6]	A	C	7.638e^-5	0.974	SYNONYMOUS_CODING CG18788 DOWNSTREAM dmGlut
3L	2559800	3L_2559800_SNP [dm3] 3L_2559800_SNP [dm6]	G	A	7.684e^-5	0.974	INTRON msn
2L	7241235	2L_7241235_SNP [dm3] 2L_7241235_SNP [dm6]	T	C	7.708e^-5	0.974	UPSTREAM Ndae1 INTRON Ndae1
2R	16984897	2R_16984897_SNP [dm3] 2R_21097392_SNP [dm6]	C	T	7.731e^-5	0.974	UPSTREAM CG34396 & 1 other INTRON CG34396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23508188	3R_23508188_SNP [dm3] 3R_27682466_SNP [dm6]	G	A	7.734e^-5	0.974	UPSTREAM Sce INTERGENIC
3L	4022835	3L_4022835_SNP [dm3] 3L_4022835_SNP [dm6]	A	G	7.967e^-5	0.974	SYNONYMOUS_CODING Mul1 DOWNSTREAM CG11594
3L	16052921	3L_16052921_SNP [dm3] 3L_16059821_SNP [dm6]	T	A	8.178e^-5	0.974	INTRON Mbs
3R	9031046	3R_9031046_SNP [dm3] 3R_13205324_SNP [dm6]	A	T	8.280e^-5	0.974	INTERGENIC
2R	11180686	2R_11180686_SNP [dm3] 2R_15293181_SNP [dm6]	A	C	8.329e^-5	0.974	INTRON Trpm	TF binding site BDTNP1_TFBS_twi
X	5447704	X_5447704_SNP [dm3] X_5553671_SNP [dm6]	G	A	8.360e^-5	0.974	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl
2L	3327525	2L_3327525_SNP [dm3] 2L_3327525_SNP [dm6]	T	C	8.372e^-5	0.974	UPSTREAM CG33282 DOWNSTREAM CG33281 INTERGENIC
2R	18278806	2R_18278806_SNP [dm3] 2R_22391301_SNP [dm6]	A	G	8.572e^-5	0.974	SYNONYMOUS_CODING CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	20382404	2L_20382404_SNP [dm3] 2L_20382404_SNP [dm6]	C	A	8.686e^-5	0.974	UPSTREAM CG16798 INTERGENIC
2R	17514285	2R_17514285_SNP [dm3] 2R_21626780_SNP [dm6]	G	A	8.742e^-5	0.974	INTRON mahj
2R	19142515	2R_19142515_SNP [dm3] 2R_23254992_SNP [dm6]	G	T	8.756e^-5	0.974	INTERGENIC
3L	12297685	3L_12297685_DEL [dm3] 3L_12304585_DEL [dm6]	AA	A	8.906e^-5	0.974	INTERGENIC
3L	14709900	3L_14709900_SNP [dm3] 3L_14716800_SNP [dm6]	T	C	9.014e^-5	0.974	INTRON ome	regulatory region REDfly_CRMs
3L	14709901	3L_14709901_SNP [dm3] 3L_14716801_SNP [dm6]	C	T	9.014e^-5	0.974	INTRON ome	regulatory region REDfly_CRMs
2R	8129051	2R_8129051_DEL [dm3] 2R_12241546_DEL [dm6]	AAGGGGG	A	9.056e^-5	0.974	UPSTREAM CG43316 DOWNSTREAM CG13170 INTRON CG43315
X	17299324	X_17299324_SNP [dm3] X_17405291_SNP [dm6]	G	A	9.313e^-5	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2210143	3L_2210143_SNP [dm3] 3L_2210143_SNP [dm6]	T	A	9.319e^-5	0.974	DOWNSTREAM CG15878 INTERGENIC
2L	20382378	2L_20382378_INS [dm3] 2L_20382378_INS [dm6]	A	AA	9.386e^-5	0.974	UPSTREAM CG16798 INTERGENIC
X	20431778	X_20431778_SNP [dm3] X_20560751_SNP [dm6]	T	G	9.419e^-5	0.974	INTRON RunxB
2R	14501023	2R_14501023_SNP [dm3] 2R_18613518_SNP [dm6]	C	G	9.569e^-5	0.974	NON_SYNONYMOUS_CODING CG10927 UPSTREAM CG42697 DOWNSTREAM mRpS28	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11882004	3L_11882004_SNP [dm3] 3L_11888904_SNP [dm6]	G	A	9.615e^-5	0.974	UTR_5_PRIME CG5897 INTRON CG44837
2R	13955339	2R_13955339_SNP [dm3] 2R_18067834_SNP [dm6]	C	G	9.639e^-5	0.974	INTRON CG34386
2R	13955342	2R_13955342_SNP [dm3] 2R_18067837_SNP [dm6]	T	G	9.639e^-5	0.974	INTRON CG34386
3R	11352870	3R_11352870_SNP [dm3] 3R_15527148_SNP [dm6]	T	C	9.650e^-5	0.974	INTERGENIC
2L	6565848	2L_6565848_SNP [dm3] 2L_6565848_SNP [dm6]	G	A	9.685e^-5	0.974	SYNONYMOUS_CODING CG13766	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	7100544	2L_7100544_SNP [dm3] 2L_7100544_SNP [dm6]	A	G	9.761e^-5	0.974	SYNONYMOUS_CODING Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	15786280	3R_15786280_SNP [dm3] 3R_19960558_SNP [dm6]	A	T	9.868e^-5	0.974	INTRON Hs6st
2L	14171360	2L_14171360_SNP [dm3] 2L_14171360_SNP [dm6]	A	G	1.017e^-4	0.974	INTRON CG43333
3L	11208724	3L_11208724_SNP [dm3] 3L_11215624_SNP [dm6]	A	T	1.023e^-4	0.974	UPSTREAM CG42671 INTRON CG42671	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	18992709	3R_18992709_SNP [dm3] 3R_23166987_SNP [dm6]	A	T	1.068e^-4	0.974	INTERGENIC
2L	15300300	2L_15300300_SNP [dm3] 2L_15300300_SNP [dm6]	G	A	1.073e^-4	0.974	DOWNSTREAM CG15262 INTERGENIC
2R	17141027	2R_17141027_SNP [dm3] 2R_21253522_SNP [dm6]	G	T	1.077e^-4	0.974	INTERGENIC
3L	17905197	3L_17905197_SNP [dm3] 3L_17912097_SNP [dm6]	A	C	1.114e^-4	0.974	NON_SYNONYMOUS_CODING CG5290	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3L	18963140	3L_18963140_SNP [dm3] 3L_18970040_SNP [dm6]	C	T	1.132e^-4	0.974	INTERGENIC
3R	14032536	3R_14032536_SNP [dm3] 3R_18206814_SNP [dm6]	A	G	1.132e^-4	0.974	INTRON CG7985
3L	7879025	3L_7879025_SNP [dm3] 3L_7885925_SNP [dm6]	T	A	1.139e^-4	0.974	INTRON CG32365
3L	4027567	3L_4027567_SNP [dm3] 3L_4027567_SNP [dm6]	A	T	1.162e^-4	0.974	SYNONYMOUS_CODING Gr64a
2R	5069383	2R_5069383_SNP [dm3] 2R_9181878_SNP [dm6]	A	G	1.166e^-4	0.974	UPSTREAM ltd INTRON ltd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17905289	3L_17905289_SNP [dm3] 3L_17912189_SNP [dm6]	G	C	1.171e^-4	0.974	SYNONYMOUS_CODING CG5290	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3L	17905357	3L_17905357_SNP [dm3] 3L_17912257_SNP [dm6]	T	C	1.171e^-4	0.974	NON_SYNONYMOUS_CODING CG5290	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2R	18889938	2R_18889938_SNP [dm3] 2R_23002415_SNP [dm6]	G	T	1.171e^-4	0.974	INTRON twi	TF binding site mE1_TFBS_bab1
3L	15938223	3L_15938223_SNP [dm3] 3L_15945123_SNP [dm6]	A	G	1.172e^-4	0.974	INTRON Pka-C3
3R	23429660	3R_23429660_SNP [dm3] 3R_27603938_SNP [dm6]	A	C	1.185e^-4	0.974	INTRON dsd
2L	15793033	2L_15793033_SNP [dm3] 2L_15793033_SNP [dm6]	G	A	1.186e^-4	0.974	INTERGENIC
2R	13230127	2R_13230127_INS [dm3] 2R_17342622_INS [dm6]	T	TGT	1.196e^-4	0.974	INTRON mbl
3L	11872127	3L_11872127_SNP [dm3] 3L_11879027_SNP [dm6]	G	A	1.199e^-4	0.974	UPSTREAM CG14128 INTRON CG44837
2R	9458686	2R_9458686_SNP [dm3] 2R_13571181_SNP [dm6]	T	G	1.210e^-4	0.974	UTR_3_PRIME CG42807 DOWNSTREAM CG42807	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_Kr mE1_TFBS_Stat92E
2R	17727842	2R_17727842_SNP [dm3] 2R_21840337_SNP [dm6]	G	A	1.213e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	14426182	2R_14426182_SNP [dm3] 2R_18538677_SNP [dm6]	T	C	1.219e^-4	0.974	SYNONYMOUS_CODING Pepck UTR_3_PRIME CG45087 UPSTREAM Rgk2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	13063123	3R_13063123_DEL [dm3] 3R_17237401_DEL [dm6]	CAC	C	1.230e^-4	0.974	INTRON beat-IIb	insulator Insulator_Class_II.mE01
3L	17908050	3L_17908050_SNP [dm3] 3L_17914950_SNP [dm6]	C	T	1.248e^-4	0.974	INTERGENIC
2L	3731175	2L_3731175_SNP [dm3] 2L_3731175_SNP [dm6]	T	A	1.256e^-4	0.974	INTRON CG10019
3L	18963110	3L_18963110_INS [dm3] 3L_18970010_INS [dm6]	C	CC	1.257e^-4	0.974	INTERGENIC
2L	1309513	2L_1309513_SNP [dm3] 2L_1309513_SNP [dm6]	A	C	1.270e^-4	0.974	INTERGENIC
3R	18390867	3R_18390867_SNP [dm3] 3R_22565145_SNP [dm6]	T	C	1.308e^-4	0.974	INTERGENIC
2R	9595718	2R_9595718_SNP [dm3] 2R_13708213_SNP [dm6]	G	T	1.320e^-4	0.974	INTRON fas
3L	13277467	3L_13277467_SNP [dm3] 3L_13284367_SNP [dm6]	C	T	1.327e^-4	0.974	DOWNSTREAM CR43146 & 1 other EXON CR43913
3R	16162031	3R_16162031_SNP [dm3] 3R_20336309_SNP [dm6]	G	C	1.338e^-4	0.974	INTERGENIC
3R	5726399	3R_5726399_SNP [dm3] 3R_9900677_SNP [dm6]	C	T	1.342e^-4	0.974	INTRON Glut4EF
2R	9595464	2R_9595464_SNP [dm3] 2R_13707959_SNP [dm6]	C	T	1.344e^-4	0.974	INTRON fas
2L	3892293	2L_3892293_DEL [dm3] 2L_3892293_DEL [dm6]	GG	G	1.365e^-4	0.974	INTRON capu
3R	15785761	3R_15785761_SNP [dm3] 3R_19960039_SNP [dm6]	T	C	1.368e^-4	0.974	INTRON Hs6st
2L	17558498	2L_17558498_SNP [dm3] 2L_17558498_SNP [dm6]	A	G	1.376e^-4	0.974	INTERGENIC
3L	18963135	3L_18963135_SNP [dm3] 3L_18970035_SNP [dm6]	T	C	1.386e^-4	0.974	INTERGENIC
X	5447422	X_5447422_SNP [dm3] X_5553389_SNP [dm6]	T	C	1.405e^-4	0.974	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl
2L	11352417	2L_11352417_SNP [dm3] 2L_11352417_SNP [dm6]	A	G	1.419e^-4	0.974	INTERGENIC	regulatory region REDfly_CRMs
3R	25491567	3R_25491567_SNP [dm3] 3R_29665845_SNP [dm6]	T	C	1.419e^-4	0.974	SYNONYMOUS_CODING ppk21 DOWNSTREAM ppk20
3L	14571036	3L_14571036_SNP [dm3] 3L_14577936_SNP [dm6]	G	T	1.423e^-4	0.974	INTERGENIC
2R	9595472	2R_9595472_INS [dm3] 2R_13707967_INS [dm6]	C	CTTTCCGAGATAGGAC...	1.432e^-4	0.974	INTRON fas
3L	8958470	3L_8958470_SNP [dm3] 3L_8965370_SNP [dm6]	G	A	1.466e^-4	0.974	SYNONYMOUS_CODING CG5653 UPSTREAM CG5660	TF binding site mE1_TFBS_chinmo
3R	11528310	3R_11528310_SNP [dm3] 3R_15702588_SNP [dm6]	A	G	1.467e^-4	0.974	INTERGENIC
2L	11180298	2L_11180298_SNP [dm3] 2L_11180298_SNP [dm6]	A	C	1.468e^-4	0.974	UTR_3_PRIME CG4788 DOWNSTREAM CG4788 INTRON Ca-beta
2L	5867149	2L_5867149_SNP [dm3] 2L_5867149_SNP [dm6]	C	T	1.489e^-4	0.974	INTRON rau	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_sens
3R	9368635	3R_9368635_INS [dm3] 3R_13542913_INS [dm6]	C	CC	1.493e^-4	0.974	INTERGENIC
3L	774317	3L_774317_SNP [dm3] 3L_774317_SNP [dm6]	T	C	1.502e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_sens
3R	10413384	3R_10413384_SNP [dm3] 3R_14587662_SNP [dm6]	G	T	1.511e^-4	0.974	INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	14664411	X_14664411_SNP [dm3] X_14770378_SNP [dm6]	T	C	1.514e^-4	0.974	INTERGENIC
2R	15460241	2R_15460241_SNP [dm3] 2R_19572736_SNP [dm6]	C	A	1.515e^-4	0.974	INTRON sm	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1721390	2R_1721390_SNP [dm3] 2R_5833885_SNP [dm6]	G	T	1.543e^-4	0.974	INTRON dpr12
3L	3846398	3L_3846398_SNP [dm3] 3L_3846398_SNP [dm6]	C	G	1.545e^-4	0.974	UTR_5_PRIME Awh	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
X	8238021	X_8238021_SNP [dm3] X_8343988_SNP [dm6]	T	G	1.568e^-4	0.974	INTRON nAChRalpha3
X	9854492	X_9854492_INS [dm3] X_9960459_INS [dm6]	T	TTT	1.577e^-4	0.974	INTERGENIC
3L	11048347	3L_11048347_SNP [dm3] 3L_11055247_SNP [dm6]	A	T	1.579e^-4	0.974	UPSTREAM CG7888 INTRON CG7888
3L	11048349	3L_11048349_INS [dm3] 3L_11055249_INS [dm6]	A	TTTCAAG	1.579e^-4	0.974	UPSTREAM CG7888 INTRON CG7888
X	5745751	X_5745751_SNP [dm3] X_5851718_SNP [dm6]	G	A	1.580e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	13551908	3L_13551908_SNP [dm3] 3L_13558808_SNP [dm6]	C	G	1.608e^-4	0.974	DOWNSTREAM CR45178 INTRON bru-3
3R	17233913	3R_17233913_INS [dm3] 3R_21408191_INS [dm6]	G	GTG	1.641e^-4	0.974	UTR_3_PRIME CheB93a UPSTREAM CheB93b	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	3437464	3R_3437464_SNP [dm3] 3R_7611742_SNP [dm6]	C	G	1.646e^-4	0.974	INTRON CG34127
2L	16371345	2L_16371345_SNP [dm3] 2L_16371345_SNP [dm6]	G	A	1.657e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
2R	13355520	2R_13355520_SNP [dm3] 2R_17468015_SNP [dm6]	C	G	1.658e^-4	0.974	INTRON Tes	TF binding site mE1_TFBS_sens
3L	13682991	3L_13682991_SNP [dm3] 3L_13689891_SNP [dm6]	T	C	1.674e^-4	0.974	INTRON bru-3
3R	11956745	3R_11956745_SNP [dm3] 3R_16131023_SNP [dm6]	G	A	1.681e^-4	0.974	INTRON Sb
2R	12572245	2R_12572245_DEL [dm3] 2R_16684740_DEL [dm6]	AGTAGTTTCCAA...	A	1.688e^-4	0.974	UPSTREAM CG30463 INTRON CG30463
2L	12596720	2L_12596720_SNP [dm3] 2L_12596720_SNP [dm6]	G	A	1.689e^-4	0.974	INTRON nub
3L	11136463	3L_11136463_SNP [dm3] 3L_11143363_SNP [dm6]	T	C	1.692e^-4	0.974	INTRON CG32082
2R	18278764	2R_18278764_SNP [dm3] 2R_22391259_SNP [dm6]	A	C	1.694e^-4	0.974	INTRON CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18278767	2R_18278767_SNP [dm3] 2R_22391262_SNP [dm6]	C	T	1.694e^-4	0.974	SPLICE_SITE_REGION CG13506 INTRON CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3L	18963696	3L_18963696_SNP [dm3] 3L_18970596_SNP [dm6]	C	A	1.696e^-4	0.974	INTERGENIC
2R	3022198	2R_3022198_SNP [dm3] 2R_7134693_SNP [dm6]	G	A	1.699e^-4	0.974	EXON CR44443
X	12765438	X_12765438_SNP [dm3] X_12871405_SNP [dm6]	T	G	1.699e^-4	0.974	INTRON Pde9	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	13229841	2R_13229841_SNP [dm3] 2R_17342336_SNP [dm6]	G	A	1.703e^-4	0.974	INTRON mbl
2L	11412885	2L_11412885_SNP [dm3] 2L_11412885_SNP [dm6]	G	C	1.718e^-4	0.974	INTERGENIC	regulatory region REDfly_CRMs
X	4839651	X_4839651_SNP [dm3] X_4945618_SNP [dm6]	C	T	1.726e^-4	0.974	INTRON Ptp4E	TF binding site BDTNP1_TFBS_dl
2L	6425687	2L_6425687_SNP [dm3] 2L_6425687_SNP [dm6]	G	T	1.729e^-4	0.974	INTRON Fic	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	6425786	2L_6425786_SNP [dm3] 2L_6425786_SNP [dm6]	T	C	1.729e^-4	0.974	SYNONYMOUS_CODING Fic DOWNSTREAM CG9527	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	10567258	2R_10567258_SNP [dm3] 2R_14679753_SNP [dm6]	A	G	1.742e^-4	0.974	INTRON mspo
2L	9154964	2L_9154964_SNP [dm3] 2L_9154964_SNP [dm6]	A	C	1.747e^-4	0.974	INTRON CG32982
3R	23071399	3R_23071399_SNP [dm3] 3R_27245677_SNP [dm6]	A	G	1.748e^-4	0.974	UPSTREAM CG18766 DOWNSTREAM CG5984 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	25452794	3R_25452794_SNP [dm3] 3R_29627072_SNP [dm6]	T	G	1.759e^-4	0.974	INTERGENIC
3L	17907668	3L_17907668_SNP [dm3] 3L_17914568_SNP [dm6]	T	A	1.762e^-4	0.974	INTERGENIC
X	3445131	X_3445131_SNP [dm3] X_3551098_SNP [dm6]	A	T	1.780e^-4	0.974	INTRON CG32791
2R	10256494	2R_10256494_SNP [dm3] 2R_14368989_SNP [dm6]	T	G	1.783e^-4	0.974	SYNONYMOUS_CODING CG34443 UPSTREAM CG34444
2L	9154958	2L_9154958_SNP [dm3] 2L_9154958_SNP [dm6]	C	G	1.795e^-4	0.974	INTRON CG32982
2R	9595722	2R_9595722_SNP [dm3] 2R_13708217_SNP [dm6]	T	C	1.797e^-4	0.974	INTRON fas
2L	11418615	2L_11418615_INS [dm3] 2L_11418615_INS [dm6]	A	AA	1.802e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	5463414	3R_5463414_INS [dm3] 3R_9637692_INS [dm6]	T	TCGAATCGAATGATAATGTG...	1.808e^-4	0.974	UPSTREAM Dh44 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3R	9028399	3R_9028399_SNP [dm3] 3R_13202677_SNP [dm6]	G	A	1.809e^-4	0.974	INTERGENIC
X	5447460	X_5447460_SNP [dm3] X_5553427_SNP [dm6]	T	G	1.812e^-4	0.974	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl
2R	7983239	2R_7983239_SNP [dm3] 2R_12095734_SNP [dm6]	A	T	1.814e^-4	0.974	INTRON jeb
2L	16358072	2L_16358072_SNP [dm3] 2L_16358072_SNP [dm6]	A	T	1.821e^-4	0.974	INTERGENIC
2L	4192572	2L_4192572_INS [dm3] 2L_4192572_INS [dm6]	G	GATATTCG	1.822e^-4	0.974	INTRON CG3714
3L	11024476	3L_11024476_SNP [dm3] 3L_11031376_SNP [dm6]	T	A	1.831e^-4	0.974	INTERGENIC
3L	16822708	3L_16822708_SNP [dm3] 3L_16829608_SNP [dm6]	G	A	1.832e^-4	0.974	UPSTREAM CG13024 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	11050564	3L_11050564_SNP [dm3] 3L_11057464_SNP [dm6]	A	G	1.833e^-4	0.974	INTRON CG7888
3L	17030785	3L_17030785_SNP [dm3] 3L_17037685_SNP [dm6]	T	C	1.833e^-4	0.974	DOWNSTREAM beg INTRON scaf6	TF binding site mE1_TFBS_cad
2R	10829669	2R_10829669_SNP [dm3] 2R_14942164_SNP [dm6]	T	G	1.842e^-4	0.974	UPSTREAM CG10257 INTERGENIC
X	5113091	X_5113091_SNP [dm3] X_5219058_SNP [dm6]	A	T	1.859e^-4	0.974	INTRON CG15465 & 1 other
X	5447380	X_5447380_DEL [dm3] X_5553347_DEL [dm6]	CGCAAGAGGGATTGC...	C	1.869e^-4	0.974	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl
3R	9014843	3R_9014843_SNP [dm3] 3R_13189121_SNP [dm6]	G	A	1.873e^-4	0.974	SYNONYMOUS_CODING CG14380
3R	9027359	3R_9027359_SNP [dm3] 3R_13201637_SNP [dm6]	C	T	1.893e^-4	0.974	INTERGENIC
2L	7096570	2L_7096570_SNP [dm3] 2L_7096570_SNP [dm6]	C	T	1.896e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
3L	7030440	3L_7030440_SNP [dm3] 3L_7037340_SNP [dm6]	C	T	1.938e^-4	0.974	INTRON Mp
3R	13747565	3R_13747565_SNP [dm3] 3R_17921843_SNP [dm6]	C	T	1.952e^-4	0.974	INTRON cpo
3L	17903214	3L_17903214_SNP [dm3] 3L_17910114_SNP [dm6]	A	G	1.953e^-4	0.974	SYNONYMOUS_CODING CG5290 DOWNSTREAM CG14353	TF binding site mE1_TFBS_chinmo
2L	5866605	2L_5866605_SNP [dm3] 2L_5866605_SNP [dm6]	G	C	1.967e^-4	0.974	INTRON rau	TF binding site BDTNP1_TFBS_da
2L	5866612	2L_5866612_SNP [dm3] 2L_5866612_SNP [dm6]	C	G	1.967e^-4	0.974	INTRON rau	TF binding site BDTNP1_TFBS_da
2L	5867250	2L_5867250_SNP [dm3] 2L_5867250_SNP [dm6]	C	A	1.970e^-4	0.974	INTRON rau	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_sens
2L	1639223	2L_1639223_SNP [dm3] 2L_1639223_SNP [dm6]	T	C	1.974e^-4	0.974	INTERGENIC
3R	9016093	3R_9016093_SNP [dm3] 3R_13190371_SNP [dm6]	A	G	1.976e^-4	0.974	DOWNSTREAM CG14380 INTERGENIC
3R	9029742	3R_9029742_SNP [dm3] 3R_13204020_SNP [dm6]	T	C	1.976e^-4	0.974	INTERGENIC
3R	24509218	3R_24509218_SNP [dm3] 3R_28683496_SNP [dm6]	C	T	1.977e^-4	0.974	INTRON CG9990
3R	9806965	3R_9806965_SNP [dm3] 3R_13981243_SNP [dm6]	G	T	1.989e^-4	0.974	INTRON rdx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	9806969	3R_9806969_SNP [dm3] 3R_13981247_SNP [dm6]	T	C	1.989e^-4	0.974	INTRON rdx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	9806981	3R_9806981_SNP [dm3] 3R_13981259_SNP [dm6]	A	G	1.989e^-4	0.974	INTRON rdx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	16250777	3L_16250777_SNP [dm3] 3L_16257677_SNP [dm6]	A	G	2.015e^-4	0.974	UPSTREAM CG13054 INTERGENIC	TF binding site mE1_TFBS_cad
2R	13230135	2R_13230135_SNP [dm3] 2R_17342630_SNP [dm6]	C	G	2.032e^-4	0.974	INTRON mbl
3L	13468330	3L_13468330_SNP [dm3] 3L_13475230_SNP [dm6]	T	C	2.032e^-4	0.974	UPSTREAM CG10089 INTERGENIC
2R	10208618	2R_10208618_SNP [dm3] 2R_14321113_SNP [dm6]	G	T	2.034e^-4	0.974	INTRON Shroom	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	9028489	3R_9028489_SNP [dm3] 3R_13202767_SNP [dm6]	T	C	2.039e^-4	0.974	INTERGENIC
3R	9028496	3R_9028496_SNP [dm3] 3R_13202774_SNP [dm6]	A	T	2.039e^-4	0.974	INTERGENIC
3R	9028497	3R_9028497_SNP [dm3] 3R_13202775_SNP [dm6]	A	G	2.039e^-4	0.974	INTERGENIC
2R	12572298	2R_12572298_SNP [dm3] 2R_16684793_SNP [dm6]	A	T	2.043e^-4	0.974	UPSTREAM CG30463 INTRON CG30463
3R	17234065	3R_17234065_SNP [dm3] 3R_21408343_SNP [dm6]	C	T	2.064e^-4	0.974	UPSTREAM CheB93b DOWNSTREAM CheB93a INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	7359051	2R_7359051_SNP [dm3] 2R_11471546_SNP [dm6]	T	A	2.070e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	7359192	2R_7359192_SNP [dm3] 2R_11471687_SNP [dm6]	T	C	2.070e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	7359235	2R_7359235_SNP [dm3] 2R_11471730_SNP [dm6]	T	A	2.070e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	7359249	2R_7359249_MNP [dm3] 2R_11471744_MNP [dm6]	CCC	GGG	2.070e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5121401	2L_5121401_SNP [dm3] 2L_5121401_SNP [dm6]	C	T	2.079e^-4	0.974	INTRON Msp300
3L	2214486	3L_2214486_SNP [dm3] 3L_2214486_SNP [dm6]	T	G	2.085e^-4	0.974	INTERGENIC
3R	9015457	3R_9015457_SNP [dm3] 3R_13189735_SNP [dm6]	C	T	2.091e^-4	0.974	DOWNSTREAM CG14380 INTERGENIC
3R	9016201	3R_9016201_SNP [dm3] 3R_13190479_SNP [dm6]	C	A	2.091e^-4	0.974	DOWNSTREAM CG14380 INTERGENIC
3R	9018037	3R_9018037_SNP [dm3] 3R_13192315_SNP [dm6]	C	T	2.091e^-4	0.974	NON_SYNONYMOUS_CODING CG8141
3R	9031278	3R_9031278_SNP [dm3] 3R_13205556_SNP [dm6]	G	C	2.091e^-4	0.974	INTERGENIC
3R	15785829	3R_15785829_SNP [dm3] 3R_19960107_SNP [dm6]	A	C	2.095e^-4	0.974	INTRON Hs6st
3R	15675116	3R_15675116_DEL [dm3] 3R_19849394_DEL [dm6]	TT	T	2.096e^-4	0.974	INTRON CG4662
3L	17948312	3L_17948312_SNP [dm3] 3L_17955212_SNP [dm6]	C	T	2.099e^-4	0.974	SPLICE_SITE_REGION Eip75B INTRON Eip75B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18118287	3L_18118287_SNP [dm3] 3L_18125187_SNP [dm6]	C	T	2.111e^-4	0.974	INTERGENIC
3L	761241	3L_761241_SNP [dm3] 3L_761241_SNP [dm6]	G	A	2.135e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	23590042	3R_23590042_SNP [dm3] 3R_27764320_SNP [dm6]	A	T	2.136e^-4	0.974	INTERGENIC
3R	23479462	3R_23479462_SNP [dm3] 3R_27653740_SNP [dm6]	G	A	2.141e^-4	0.974	DOWNSTREAM RpS10a INTRON tau
3L	4656893	3L_4656893_SNP [dm3] 3L_4656893_SNP [dm6]	A	C	2.151e^-4	0.974	INTRON axo
X	17299365	X_17299365_SNP [dm3] X_17405332_SNP [dm6]	T	A	2.159e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17299370	X_17299370_SNP [dm3] X_17405337_SNP [dm6]	A	G	2.159e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17299373	X_17299373_SNP [dm3] X_17405340_SNP [dm6]	A	G	2.159e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17299374	X_17299374_SNP [dm3] X_17405341_SNP [dm6]	C	T	2.159e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17299378	X_17299378_SNP [dm3] X_17405345_SNP [dm6]	T	A	2.159e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17299409	X_17299409_SNP [dm3] X_17405376_SNP [dm6]	C	A	2.159e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_HSA
X	17299427	X_17299427_DEL [dm3] X_17405394_DEL [dm6]	TTTCACATT	T	2.159e^-4	0.974	INTERGENIC
3L	4487457	3L_4487457_SNP [dm3] 3L_4487457_SNP [dm6]	C	T	2.170e^-4	0.974	NON_SYNONYMOUS_CODING CG13722
X	13231440	X_13231440_SNP [dm3] X_13337407_SNP [dm6]	G	A	2.172e^-4	0.974	UPSTREAM CG15747 INTRON RpS15Aa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	7358448	2R_7358448_SNP [dm3] 2R_11470943_SNP [dm6]	C	G	2.174e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	10248414	3L_10248414_SNP [dm3] 3L_10255314_SNP [dm6]	C	T	2.197e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8127098	3L_8127098_SNP [dm3] 3L_8133998_SNP [dm6]	A	T	2.197e^-4	0.974	INTRON CG7504
3R	9016092	3R_9016092_SNP [dm3] 3R_13190370_SNP [dm6]	C	A	2.197e^-4	0.974	DOWNSTREAM CG14380 INTERGENIC
3L	17901030	3L_17901030_SNP [dm3] 3L_17907930_SNP [dm6]	C	G	2.223e^-4	0.974	UPSTREAM CG14353 & 1 other INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_Ubx
2L	3812520	2L_3812520_SNP [dm3] 2L_3812520_SNP [dm6]	C	T	2.226e^-4	0.974	SYNONYMOUS_CODING CG3407	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4739500	3L_4739500_DEL [dm3] 3L_4739500_DEL [dm6]	GGCCA	G	2.230e^-4	0.974	INTRON RhoGEF64C	TF binding site mE1_TFBS_inv
3R	16337711	3R_16337711_SNP [dm3] 3R_20511989_SNP [dm6]	T	G	2.237e^-4	0.974	INTRON CG4288	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	16337724	3R_16337724_SNP [dm3] 3R_20512002_SNP [dm6]	C	T	2.237e^-4	0.974	INTRON CG4288	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	8697940	3L_8697940_SNP [dm3] 3L_8704840_SNP [dm6]	A	G	2.240e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_cad
3R	6492186	3R_6492186_SNP [dm3] 3R_10666464_SNP [dm6]	G	A	2.244e^-4	0.974	INTERGENIC
X	3753344	X_3753344_SNP [dm3] X_3859311_SNP [dm6]	C	A	2.252e^-4	0.974	EXON roX1
X	4774024	X_4774024_SNP [dm3] X_4879991_SNP [dm6]	G	A	2.254e^-4	0.974	INTRON CG42594
X	4774041	X_4774041_SNP [dm3] X_4880008_SNP [dm6]	T	A	2.254e^-4	0.974	INTRON CG42594
2L	16460499	2L_16460499_DEL [dm3] 2L_16460499_DEL [dm6]	GG	G	2.259e^-4	0.974	INTERGENIC	regulatory region REDfly_CRMs
3L	18963138	3L_18963138_SNP [dm3] 3L_18970038_SNP [dm6]	A	T	2.271e^-4	0.974	INTERGENIC
2R	13807980	2R_13807980_SNP [dm3] 2R_17920475_SNP [dm6]	G	A	2.284e^-4	0.974	INTRON Elk
3L	17921865	3L_17921865_SNP [dm3] 3L_17928765_SNP [dm6]	A	C	2.286e^-4	0.974	INTERGENIC
2R	5285601	2R_5285601_SNP [dm3] 2R_9398096_SNP [dm6]	C	T	2.292e^-4	0.974	SYNONYMOUS_CODING CG8801 UPSTREAM l_2_k10201	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9029401	3R_9029401_SNP [dm3] 3R_13203679_SNP [dm6]	C	T	2.299e^-4	0.974	INTERGENIC
3L	17904353	3L_17904353_SNP [dm3] 3L_17911253_SNP [dm6]	C	T	2.305e^-4	0.974	INTRON CG5290	TF binding site mE1_TFBS_HSA
2R	6854883	2R_6854883_DEL [dm3] 2R_10967378_DEL [dm6]	AAA	A	2.305e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	3970429	X_3970429_SNP [dm3] X_4076396_SNP [dm6]	A	G	2.311e^-4	0.974	UTR_5_PRIME CG43689
2R	16378541	2R_16378541_SNP [dm3] 2R_20491036_SNP [dm6]	G	A	2.312e^-4	0.974	EXON CR44643
3R	15785599	3R_15785599_SNP [dm3] 3R_19959877_SNP [dm6]	G	A	2.319e^-4	0.974	INTRON Hs6st
3R	15785639	3R_15785639_SNP [dm3] 3R_19959917_SNP [dm6]	C	A	2.319e^-4	0.974	INTRON Hs6st
2R	6386971	2R_6386971_SNP [dm3] 2R_10499466_SNP [dm6]	A	T	2.324e^-4	0.974	DOWNSTREAM lola INTRON lola
2R	17968640	2R_17968640_SNP [dm3] 2R_22081135_SNP [dm6]	T	C	2.324e^-4	0.974	UTR_5_PRIME Synj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	17968641	2R_17968641_SNP [dm3] 2R_22081136_SNP [dm6]	T	A	2.324e^-4	0.974	UTR_5_PRIME Synj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	17968652	2R_17968652_SNP [dm3] 2R_22081147_SNP [dm6]	A	G	2.324e^-4	0.974	UTR_5_PRIME Synj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	17968676	2R_17968676_SNP [dm3] 2R_22081171_SNP [dm6]	A	C	2.324e^-4	0.974	UTR_5_PRIME Synj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	8010214	2L_8010214_SNP [dm3] 2L_8010214_SNP [dm6]	G	C	2.339e^-4	0.974	NON_SYNONYMOUS_CODING CG34010 UPSTREAM CG12560	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	8010246	2L_8010246_SNP [dm3] 2L_8010246_SNP [dm6]	G	C	2.339e^-4	0.974	NON_SYNONYMOUS_CODING CG34010 UPSTREAM CG12560	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	11871457	3L_11871457_SNP [dm3] 3L_11878357_SNP [dm6]	T	A	2.352e^-4	0.974	UPSTREAM CG14128 INTRON CG44837
2L	20382368	2L_20382368_SNP [dm3] 2L_20382368_SNP [dm6]	T	G	2.357e^-4	0.974	UPSTREAM CG16798 INTERGENIC
2R	13816815	2R_13816815_SNP [dm3] 2R_17929310_SNP [dm6]	T	C	2.358e^-4	0.974	INTERGENIC
3R	20260844	3R_20260844_SNP [dm3] 3R_24435122_SNP [dm6]	G	C	2.378e^-4	0.974	INTRON nAChRalpha1
3R	15399557	3R_15399557_SNP [dm3] 3R_19573835_SNP [dm6]	A	G	2.384e^-4	0.974	INTRON Dys
3R	27244111	3R_27244111_SNP [dm3] 3R_31418389_SNP [dm6]	C	T	2.388e^-4	0.974	INTRON Gprk2
3R	19623204	3R_19623204_SNP [dm3] 3R_23797482_SNP [dm6]	C	T	2.402e^-4	0.974	SYNONYMOUS_CODING mbc	TF binding site mE1_TFBS_cad
2R	7837383	2R_7837383_SNP [dm3] 2R_11949878_SNP [dm6]	C	T	2.413e^-4	0.974	INTRON CG13188
2L	6423704	2L_6423704_SNP [dm3] 2L_6423704_SNP [dm6]	G	A	2.414e^-4	0.974	UPSTREAM Tig & 1 other INTERGENIC
2L	4457178	2L_4457178_INS [dm3] 2L_4457178_INS [dm6]	C	CCAC	2.419e^-4	0.974	UPSTREAM Gs1l DOWNSTREAM RpL27A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	8477222	X_8477222_SNP [dm3] X_8583189_SNP [dm6]	G	A	2.423e^-4	0.974	INTRON CG12065
2L	7273120	2L_7273120_SNP [dm3] 2L_7273120_SNP [dm6]	C	G	2.424e^-4	0.974	INTRON Wnt4	TF binding site mE1_TFBS_HSA
3R	17844235	3R_17844235_SNP [dm3] 3R_22018513_SNP [dm6]	T	C	2.434e^-4	0.974	DOWNSTREAM CG6455 INTRON CG6439	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4662128	2R_4662128_SNP [dm3] 2R_8774623_SNP [dm6]	C	T	2.444e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	15399713	3R_15399713_SNP [dm3] 3R_19573991_SNP [dm6]	C	T	2.448e^-4	0.974	INTRON Dys
2R	12505256	2R_12505256_SNP [dm3] 2R_16617751_SNP [dm6]	C	A	2.451e^-4	0.974	UPSTREAM CG5065 INTRON CG5065
2R	17315450	2R_17315450_SNP [dm3] 2R_21427945_SNP [dm6]	A	G	2.453e^-4	0.974	INTRON Sdc
2R	19924886	2R_19924886_SNP [dm3] 2R_24037363_SNP [dm6]	G	A	2.476e^-4	0.974	UPSTREAM IntS1 DOWNSTREAM MAN1 INTRON Not11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	19924969	2R_19924969_SNP [dm3] 2R_24037446_SNP [dm6]	C	T	2.476e^-4	0.974	SYNONYMOUS_CODING Not11 UPSTREAM IntS1 DOWNSTREAM MAN1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	13668821	2R_13668821_SNP [dm3] 2R_17781316_SNP [dm6]	G	A	2.484e^-4	0.974	INTRON fab1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	19083862	2R_19083862_SNP [dm3] 2R_23196339_SNP [dm6]	A	C	2.490e^-4	0.974	INTRON CG34371	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7609714	2L_7609714_SNP [dm3] 2L_7609714_SNP [dm6]	T	A	2.496e^-4	0.974	INTRON CG6739
3L	4029718	3L_4029718_SNP [dm3] 3L_4029718_SNP [dm6]	C	T	2.503e^-4	0.974	SYNONYMOUS_CODING Gr64b UTR_5_PRIME Gr64c UPSTREAM Gr64c
3R	19424466	3R_19424466_SNP [dm3] 3R_23598744_SNP [dm6]	T	A	2.510e^-4	0.974	INTRON CG10183
3L	16470855	3L_16470855_SNP [dm3] 3L_16477755_SNP [dm6]	A	T	2.547e^-4	0.974	INTRON CG33158 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16470867	3L_16470867_INS [dm3] 3L_16477767_INS [dm6]	A	AC	2.547e^-4	0.974	INTRON CG33158 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16470884	3L_16470884_SNP [dm3] 3L_16477784_SNP [dm6]	T	C	2.547e^-4	0.974	INTRON CG33158 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18288233	3L_18288233_DEL [dm3] 3L_18295133_DEL [dm6]	GG	G	2.550e^-4	0.974	UPSTREAM CG5103 INTRON CR43306	TF binding site mE1_TFBS_Kr
2R	16985009	2R_16985009_DEL [dm3] 2R_21097504_DEL [dm6]	TT	T	2.563e^-4	0.974	UPSTREAM CG34396 & 1 other INTRON CG34396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	11871408	3L_11871408_SNP [dm3] 3L_11878308_SNP [dm6]	G	A	2.580e^-4	0.974	UPSTREAM CG14128 INTRON CG44837
2L	5121460	2L_5121460_SNP [dm3] 2L_5121460_SNP [dm6]	T	G	2.596e^-4	0.974	INTRON Msp300
2L	5749680	2L_5749680_SNP [dm3] 2L_5749680_SNP [dm6]	C	A	2.605e^-4	0.974	INTRON CG11030	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8855898	3L_8855898_SNP [dm3] 3L_8862798_SNP [dm6]	T	G	2.609e^-4	0.974	INTRON dally	TF binding site BDTNP1_TFBS_prd
2R	10304901	2R_10304901_SNP [dm3] 2R_14417396_SNP [dm6]	G	T	2.611e^-4	0.974	INTERGENIC
2R	11139750	2R_11139750_SNP [dm3] 2R_15252245_SNP [dm6]	T	G	2.616e^-4	0.974	UPSTREAM scb INTRON scb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
3L	17909508	3L_17909508_SNP [dm3] 3L_17916408_SNP [dm6]	A	C	2.625e^-4	0.974	INTERGENIC
3R	9023352	3R_9023352_SNP [dm3] 3R_13197630_SNP [dm6]	C	G	2.629e^-4	0.974	INTERGENIC
X	13970980	X_13970980_SNP [dm3] X_14076947_SNP [dm6]	G	A	2.630e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	18285232	2R_18285232_SNP [dm3] 2R_22397727_SNP [dm6]	T	G	2.642e^-4	0.974	INTRON babos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18285233	2R_18285233_SNP [dm3] 2R_22397728_SNP [dm6]	G	C	2.642e^-4	0.974	INTRON babos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18286755	2R_18286755_SNP [dm3] 2R_22399250_SNP [dm6]	C	T	2.642e^-4	0.974	INTRON babos	TF binding site BDTNP1_TFBS_dl
3R	18390960	3R_18390960_INS [dm3] 3R_22565238_INS [dm6]	A	ATCAGTAATAAT...	2.650e^-4	0.974	INTERGENIC
3L	4484576	3L_4484576_SNP [dm3] 3L_4484576_SNP [dm6]	A	G	2.659e^-4	0.974	DOWNSTREAM CG13722 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
3R	10948172	3R_10948172_SNP [dm3] 3R_15122450_SNP [dm6]	C	T	2.675e^-4	0.974	INTRON CG42788
3R	26602243	3R_26602243_SNP [dm3] 3R_30776521_SNP [dm6]	A	C	2.686e^-4	0.974	INTRON zfh1
2L	16358573	2L_16358573_SNP [dm3] 2L_16358573_SNP [dm6]	T	A	2.692e^-4	0.974	INTERGENIC
2L	15172042	2L_15172042_SNP [dm3] 2L_15172042_SNP [dm6]	A	C	2.694e^-4	0.974	INTRON CG4168
3L	11715659	3L_11715659_SNP [dm3] 3L_11722559_SNP [dm6]	G	A	2.696e^-4	0.974	INTRON Bmcp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15967316	3R_15967316_SNP [dm3] 3R_20141594_SNP [dm6]	C	T	2.726e^-4	0.974	INTERGENIC
3L	17900877	3L_17900877_SNP [dm3] 3L_17907777_SNP [dm6]	A	G	2.732e^-4	0.974	UTR_5_PRIME Prestin UPSTREAM CG14353	TF binding site mE1_TFBS_Ubx
3L	17901045	3L_17901045_SNP [dm3] 3L_17907945_SNP [dm6]	A	T	2.732e^-4	0.974	UPSTREAM CG14353 & 1 other INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_Ubx
3L	14067035	3L_14067035_SNP [dm3] 3L_14073935_SNP [dm6]	A	G	2.738e^-4	0.974	SYNONYMOUS_CODING Pex1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14700420	2L_14700420_SNP [dm3] 2L_14700420_SNP [dm6]	T	C	2.751e^-4	0.974	INTERGENIC
3R	9902997	3R_9902997_SNP [dm3] 3R_14077275_SNP [dm6]	A	G	2.766e^-4	0.974	INTRON foxo
3L	10022362	3L_10022362_SNP [dm3] 3L_10029262_SNP [dm6]	C	A	2.769e^-4	0.974	DOWNSTREAM CR45155 INTRON dpr6
2L	13717359	2L_13717359_DEL [dm3] 2L_13717359_DEL [dm6]	CC	C	2.775e^-4	0.974	UPSTREAM CG31814 INTERGENIC
3L	8856534	3L_8856534_SNP [dm3] 3L_8863434_SNP [dm6]	T	C	2.780e^-4	0.974	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3327511	2L_3327511_SNP [dm3] 2L_3327511_SNP [dm6]	T	C	2.787e^-4	0.974	UPSTREAM CG33282 DOWNSTREAM CG33281 INTERGENIC
3L	10248494	3L_10248494_SNP [dm3] 3L_10255394_SNP [dm6]	C	G	2.791e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16984914	2R_16984914_SNP [dm3] 2R_21097409_SNP [dm6]	G	T	2.816e^-4	0.974	UPSTREAM CG34396 & 1 other INTRON CG34396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13710077	3R_13710077_SNP [dm3] 3R_17884355_SNP [dm6]	G	A	2.828e^-4	0.974	SYNONYMOUS_CODING Rim INTRON Rim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	5446021	2R_5446021_SNP [dm3] 2R_9558516_SNP [dm6]	T	G	2.829e^-4	0.974	DOWNSTREAM CR45281 INTERGENIC
3L	11427311	3L_11427311_SNP [dm3] 3L_11434211_SNP [dm6]	T	C	2.845e^-4	0.974	DOWNSTREAM CG6149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	7879019	3L_7879019_SNP [dm3] 3L_7885919_SNP [dm6]	A	T	2.848e^-4	0.974	INTRON CG32365
2R	7359278	2R_7359278_INS [dm3] 2R_11471773_INS [dm6]	T	TGATTAGGCTGCCCAT...	2.854e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	6951194	2L_6951194_SNP [dm3] 2L_6951194_SNP [dm6]	A	T	2.855e^-4	0.974	SYNONYMOUS_CODING SA UPSTREAM Gas41	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	16470853	3L_16470853_SNP [dm3] 3L_16477753_SNP [dm6]	A	G	2.859e^-4	0.974	INTRON CG33158 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10766799	3L_10766799_DEL [dm3] 3L_10773699_DEL [dm6]	TGCTCT	T	2.870e^-4	0.974	DOWNSTREAM CG43245 INTERGENIC
X	4106661	X_4106661_SNP [dm3] X_4212628_SNP [dm6]	C	T	2.885e^-4	0.974	UPSTREAM CG43288 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	2645866	3L_2645866_SNP [dm3] 3L_2645866_SNP [dm6]	A	G	2.892e^-4	0.974	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	17299328	X_17299328_SNP [dm3] X_17405295_SNP [dm6]	G	T	2.901e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17299330	X_17299330_SNP [dm3] X_17405297_SNP [dm6]	T	A	2.901e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25600419	3R_25600419_SNP [dm3] 3R_29774697_SNP [dm6]	A	G	2.902e^-4	0.974	INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	16371334	2L_16371334_SNP [dm3] 2L_16371334_SNP [dm6]	C	T	2.911e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
3L	17030775	3L_17030775_SNP [dm3] 3L_17037675_SNP [dm6]	T	C	2.911e^-4	0.974	DOWNSTREAM beg INTRON scaf6	TF binding site mE1_TFBS_cad
3L	17030776	3L_17030776_SNP [dm3] 3L_17037676_SNP [dm6]	G	A	2.911e^-4	0.974	DOWNSTREAM beg INTRON scaf6	TF binding site mE1_TFBS_cad
2R	11900270	2R_11900270_SNP [dm3] 2R_16012765_SNP [dm6]	A	G	2.913e^-4	0.974	SYNONYMOUS_CODING CG8389	TF binding site BDTNP1_TFBS_sna
3L	15270114	3L_15270114_SNP [dm3] 3L_15277014_SNP [dm6]	C	T	2.918e^-4	0.974	INTERGENIC
2L	17319430	2L_17319430_DEL [dm3] 2L_17319430_DEL [dm6]	GC	G	2.918e^-4	0.974	UPSTREAM CR45696 DOWNSTREAM CG45691 INTERGENIC
2R	16003689	2R_16003689_INS [dm3] 2R_20116184_INS [dm6]	C	CACAC	2.926e^-4	0.974	UTR_3_PRIME 18w	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7359076	2R_7359076_SNP [dm3] 2R_11471571_SNP [dm6]	C	A	2.930e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5861287	2L_5861287_SNP [dm3] 2L_5861287_SNP [dm6]	A	T	2.932e^-4	0.974	SYNONYMOUS_CODING rau	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2L	8001107	2L_8001107_SNP [dm3] 2L_8001107_SNP [dm6]	C	T	2.934e^-4	0.974	INTRON Wwox
X	11341443	X_11341443_SNP [dm3] X_11447410_SNP [dm6]	T	A	2.935e^-4	0.974	INTRON Evi5	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
X	3753303	X_3753303_SNP [dm3] X_3859270_SNP [dm6]	A	G	2.941e^-4	0.974	EXON roX1
2L	5750531	2L_5750531_SNP [dm3] 2L_5750531_SNP [dm6]	G	A	2.944e^-4	0.974	INTRON CG11030	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8356131	3L_8356131_SNP [dm3] 3L_8363031_SNP [dm6]	T	C	2.949e^-4	0.974	INTERGENIC
2R	11035448	2R_11035448_SNP [dm3] 2R_15147943_SNP [dm6]	T	C	2.957e^-4	0.974	START_GAINED CG7544 UTR_5_PRIME CG7544 UPSTREAM CG8089	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	17901632	3L_17901632_SNP [dm3] 3L_17908532_SNP [dm6]	A	G	2.960e^-4	0.974	UPSTREAM Prestin DOWNSTREAM CG5290 INTRON CG14353	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	17902567	3L_17902567_SNP [dm3] 3L_17909467_SNP [dm6]	G	C	2.960e^-4	0.974	UTR_3_PRIME CG14353 DOWNSTREAM CG5290
3L	17902606	3L_17902606_SNP [dm3] 3L_17909506_SNP [dm6]	T	G	2.960e^-4	0.974	UTR_3_PRIME CG14353 & 1 other
3L	17902608	3L_17902608_SNP [dm3] 3L_17909508_SNP [dm6]	A	T	2.960e^-4	0.974	UTR_3_PRIME CG14353 & 1 other
3L	17909896	3L_17909896_SNP [dm3] 3L_17916796_SNP [dm6]	G	A	2.960e^-4	0.974	INTERGENIC
2L	9822048	2L_9822048_SNP [dm3] 2L_9822048_SNP [dm6]	G	C	2.966e^-4	0.974	INTRON nAChRalpha6
3R	9369218	3R_9369218_SNP [dm3] 3R_13543496_SNP [dm6]	G	A	2.983e^-4	0.974	DOWNSTREAM CG31337 INTERGENIC
X	4685647	X_4685647_DEL [dm3] X_4791614_DEL [dm6]	CGATGGGC	C	2.988e^-4	0.974	INTERGENIC
2R	16003639	2R_16003639_SNP [dm3] 2R_20116134_SNP [dm6]	T	C	2.994e^-4	0.974	UTR_3_PRIME 18w	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13349348	X_13349348_SNP [dm3] X_13455315_SNP [dm6]	T	C	3.009e^-4	0.974	INTRON Neto
3R	14027588	3R_14027588_SNP [dm3] 3R_18201866_SNP [dm6]	G	A	3.010e^-4	0.974	INTRON CG7985
3L	18226858	3L_18226858_SNP [dm3] 3L_18233758_SNP [dm6]	A	G	3.015e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11986241	2R_11986241_SNP [dm3] 2R_16098736_SNP [dm6]	A	G	3.015e^-4	0.974	UPSTREAM mRpL34 & 1 other DOWNSTREAM CG8414 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	15947024	3L_15947024_SNP [dm3] 3L_15953924_SNP [dm6]	T	A	3.017e^-4	0.974	UPSTREAM Pka-C3 INTRON Pka-C3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3990486	2L_3990486_SNP [dm3] 2L_3990486_SNP [dm6]	T	G	3.022e^-4	0.974	INTRON fred	TF binding site mE1_TFBS_cad
3L	11197681	3L_11197681_SNP [dm3] 3L_11204581_SNP [dm6]	A	C	3.041e^-4	0.974	INTRON Plod
2L	5974817	2L_5974817_SNP [dm3] 2L_5974817_SNP [dm6]	G	C	3.058e^-4	0.974	INTRON chic
2L	15115409	2L_15115409_SNP [dm3] 2L_15115409_SNP [dm6]	C	G	3.065e^-4	0.974	SYNONYMOUS_CODING stc	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4715229	3L_4715229_SNP [dm3] 3L_4715229_SNP [dm6]	A	T	3.077e^-4	0.974	INTRON RhoGEF64C
X	3753413	X_3753413_SNP [dm3] X_3859380_SNP [dm6]	A	T	3.082e^-4	0.974	EXON roX1
X	17299361	X_17299361_SNP [dm3] X_17405328_SNP [dm6]	T	C	3.100e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20260892	3R_20260892_SNP [dm3] 3R_24435170_SNP [dm6]	T	C	3.104e^-4	0.974	INTRON nAChRalpha1
X	4691174	X_4691174_INS [dm3] X_4797141_INS [dm6]	C	TCAAAAACGATTGCAG...	3.107e^-4	0.974	DOWNSTREAM CG2861 INTERGENIC
X	4691198	X_4691198_SNP [dm3] X_4797165_SNP [dm6]	C	G	3.107e^-4	0.974	DOWNSTREAM CG2861 INTERGENIC
2R	7541461	2R_7541461_SNP [dm3] 2R_11653956_SNP [dm6]	T	A	3.111e^-4	0.974	UPSTREAM CG13198 INTRON Roc2
2R	13813460	2R_13813460_SNP [dm3] 2R_17925955_SNP [dm6]	G	A	3.115e^-4	0.974	UTR_3_PRIME Elk
3R	21142035	3R_21142035_DEL [dm3] 3R_25316313_DEL [dm6]	AA	A	3.121e^-4	0.974	UPSTREAM CG10559 DOWNSTREAM CG10553 INTERGENIC
3L	16052940	3L_16052940_SNP [dm3] 3L_16059840_SNP [dm6]	G	A	3.122e^-4	0.974	INTRON Mbs
3L	4027561	3L_4027561_SNP [dm3] 3L_4027561_SNP [dm6]	C	T	3.153e^-4	0.974	SYNONYMOUS_CODING Gr64a
3R	26152129	3R_26152129_SNP [dm3] 3R_30326407_SNP [dm6]	G	A	3.176e^-4	0.974	INTRON hdc
3R	15817148	3R_15817148_SNP [dm3] 3R_19991426_SNP [dm6]	A	G	3.201e^-4	0.974	INTRON Hs6st
2R	11139684	2R_11139684_SNP [dm3] 2R_15252179_SNP [dm6]	G	A	3.206e^-4	0.974	UPSTREAM scb INTRON scb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	15268476	3L_15268476_SNP [dm3] 3L_15275376_SNP [dm6]	A	G	3.216e^-4	0.974	INTERGENIC
2L	17698390	2L_17698390_SNP [dm3] 2L_17698390_SNP [dm6]	A	T	3.224e^-4	0.974	INTRON CadN
2L	4457097	2L_4457097_SNP [dm3] 2L_4457097_SNP [dm6]	T	C	3.228e^-4	0.974	UPSTREAM Gs1l DOWNSTREAM RpL27A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4457129	2L_4457129_SNP [dm3] 2L_4457129_SNP [dm6]	C	T	3.228e^-4	0.974	UPSTREAM Gs1l DOWNSTREAM RpL27A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11385660	3L_11385660_DEL [dm3] 3L_11392560_DEL [dm6]	GG	G	3.245e^-4	0.974	INTERGENIC
2L	314444	2L_314444_DEL [dm3] 2L_314444_DEL [dm6]	GG	G	3.252e^-4	0.974	INTRON Plc21C
3L	4715234	3L_4715234_SNP [dm3] 3L_4715234_SNP [dm6]	T	C	3.273e^-4	0.974	INTRON RhoGEF64C
3R	16748536	3R_16748536_SNP [dm3] 3R_20922814_SNP [dm6]	C	A	3.282e^-4	0.974	INTRON CG31191 & 1 other
2L	7558692	2L_7558692_SNP [dm3] 2L_7558692_SNP [dm6]	A	C	3.288e^-4	0.974	INTRON RapGAP1
3R	9129964	3R_9129964_SNP [dm3] 3R_13304242_SNP [dm6]	G	A	3.289e^-4	0.974	SYNONYMOUS_CODING CG32473 UPSTREAM CG32473 DOWNSTREAM CG43208
2L	3731297	2L_3731297_SNP [dm3] 2L_3731297_SNP [dm6]	C	A	3.290e^-4	0.974	INTRON CG10019
3L	2335765	3L_2335765_SNP [dm3] 3L_2335765_SNP [dm6]	C	A	3.291e^-4	0.974	INTRON MsR1
3R	3436874	3R_3436874_SNP [dm3] 3R_7611152_SNP [dm6]	A	C	3.304e^-4	0.974	INTRON CG34127
X	14624374	X_14624374_SNP [dm3] X_14730341_SNP [dm6]	T	C	3.308e^-4	0.974	INTRON NetB
3L	2401064	3L_2401064_SNP [dm3] 3L_2401064_SNP [dm6]	T	C	3.320e^-4	0.974	INTRON CG45186
3L	22843153	3L_22843153_SNP [dm3] 3L_22850053_SNP [dm6]	T	C	3.322e^-4	0.974	UPSTREAM CR43426 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	12506618	3R_12506618_SNP [dm3] 3R_16680896_SNP [dm6]	G	A	3.349e^-4	0.974	INTRON Ubx	TF binding site mE1_TFBS_cad
3R	19127729	3R_19127729_SNP [dm3] 3R_23302007_SNP [dm6]	A	G	3.361e^-4	0.974	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19127769	3R_19127769_SNP [dm3] 3R_23302047_SNP [dm6]	T	A	3.361e^-4	0.974	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6646144	2R_6646144_SNP [dm3] 2R_10758639_SNP [dm6]	G	T	3.368e^-4	0.974	INTRON CG33144
3R	9022911	3R_9022911_SNP [dm3] 3R_13197189_SNP [dm6]	G	T	3.374e^-4	0.974	INTERGENIC
3R	9022932	3R_9022932_SNP [dm3] 3R_13197210_SNP [dm6]	T	A	3.374e^-4	0.974	INTERGENIC
3R	19302025	3R_19302025_SNP [dm3] 3R_23476303_SNP [dm6]	G	A	3.400e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	15015138	2R_15015138_SNP [dm3] 2R_19127633_SNP [dm6]	C	T	3.403e^-4	0.974	UPSTREAM CG15117 INTRON CG15117
2R	11760179	2R_11760179_SNP [dm3] 2R_15872674_SNP [dm6]	C	T	3.423e^-4	0.974	SYNONYMOUS_CODING sli UTR_3_PRIME sli	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8127368	2R_8127368_SNP [dm3] 2R_12239863_SNP [dm6]	T	A	3.464e^-4	0.974	UPSTREAM CG13170 INTERGENIC
2R	8127372	2R_8127372_SNP [dm3] 2R_12239867_SNP [dm6]	A	G	3.464e^-4	0.974	UPSTREAM CG13170 INTERGENIC
3L	18919141	3L_18919141_SNP [dm3] 3L_18926041_SNP [dm6]	C	T	3.464e^-4	0.974	SYNONYMOUS_CODING CG43049 INTRON CG32204
X	7443395	X_7443395_DEL [dm3] X_7549362_DEL [dm6]	GCAACAG	G	3.475e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9507232	3L_9507232_SNP [dm3] 3L_9514132_SNP [dm6]	A	G	3.479e^-4	0.974	UTR_3_PRIME CG33700 UPSTREAM CG33702 & 1 other
X	2448694	X_2448694_SNP [dm3] X_2554661_SNP [dm6]	T	C	3.481e^-4	0.974	INTRON Pdfr
2R	11671717	2R_11671717_SNP [dm3] 2R_15784212_SNP [dm6]	T	A	3.487e^-4	0.974	INTRON Zasp52	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11671733	2R_11671733_SNP [dm3] 2R_15784228_SNP [dm6]	T	C	3.487e^-4	0.974	INTRON Zasp52	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13787185	3R_13787185_SNP [dm3] 3R_17961463_SNP [dm6]	A	C	3.489e^-4	0.974	INTRON cpo
2R	6326716	2R_6326716_SNP [dm3] 2R_10439211_SNP [dm6]	A	G	3.492e^-4	0.974	UPSTREAM Galphao INTRON Galphao	TF binding site BDTNP1_TFBS_dl
3L	12337092	3L_12337092_SNP [dm3] 3L_12343992_SNP [dm6]	G	A	3.503e^-4	0.974	INTRON CrzR
3L	12337097	3L_12337097_SNP [dm3] 3L_12343997_SNP [dm6]	C	T	3.503e^-4	0.974	INTRON CrzR
3L	12337135	3L_12337135_SNP [dm3] 3L_12344035_SNP [dm6]	T	A	3.503e^-4	0.974	INTRON CrzR
3L	12337154	3L_12337154_SNP [dm3] 3L_12344054_SNP [dm6]	A	C	3.503e^-4	0.974	INTRON CrzR
3R	9763869	3R_9763869_SNP [dm3] 3R_13938147_SNP [dm6]	T	G	3.524e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	9754944	X_9754944_SNP [dm3] X_9860911_SNP [dm6]	C	A	3.526e^-4	0.974	INTERGENIC
3R	14600799	3R_14600799_SNP [dm3] 3R_18775077_SNP [dm6]	A	C	3.548e^-4	0.974	INTRON CG7720
2L	9582553	2L_9582553_SNP [dm3] 2L_9582553_SNP [dm6]	G	A	3.551e^-4	0.974	UPSTREAM gcm INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
3L	15202327	3L_15202327_SNP [dm3] 3L_15209227_SNP [dm6]	C	T	3.557e^-4	0.974	DOWNSTREAM CG6888 INTERGENIC
X	16824187	X_16824187_SNP [dm3] X_16930154_SNP [dm6]	C	T	3.582e^-4	0.974	INTRON CG4928
X	14624379	X_14624379_SNP [dm3] X_14730346_SNP [dm6]	T	C	3.592e^-4	0.974	INTRON NetB
2R	8129044	2R_8129044_SNP [dm3] 2R_12241539_SNP [dm6]	T	C	3.599e^-4	0.974	DOWNSTREAM CG13170 INTRON CG43315
2R	13955362	2R_13955362_SNP [dm3] 2R_18067857_SNP [dm6]	G	C	3.609e^-4	0.974	INTRON CG34386
3L	16472692	3L_16472692_SNP [dm3] 3L_16479592_SNP [dm6]	G	A	3.624e^-4	0.974	INTRON CG33158 & 1 other
3R	11528217	3R_11528217_SNP [dm3] 3R_15702495_SNP [dm6]	C	T	3.636e^-4	0.974	INTERGENIC
3R	23639348	3R_23639348_SNP [dm3] 3R_27813626_SNP [dm6]	G	A	3.636e^-4	0.974	INTRON CG34353
3R	5463616	3R_5463616_SNP [dm3] 3R_9637894_SNP [dm6]	A	G	3.660e^-4	0.974	UPSTREAM Dh44 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
3R	27259773	3R_27259773_SNP [dm3] 3R_31434051_SNP [dm6]	T	A	3.663e^-4	0.974	INTRON Gprk2
2L	9153396	2L_9153396_DEL [dm3] 2L_9153396_DEL [dm6]	CC	C	3.663e^-4	0.974	INTRON CG32982
2L	9153406	2L_9153406_SNP [dm3] 2L_9153406_SNP [dm6]	C	T	3.663e^-4	0.974	INTRON CG32982
3R	14757031	3R_14757031_INS [dm3] 3R_18931309_INS [dm6]	A	ATA	3.665e^-4	0.974	UTR_5_PRIME CG42613	TF binding site mE1_TFBS_Trl
3R	5472773	3R_5472773_SNP [dm3] 3R_9647051_SNP [dm6]	A	G	3.666e^-4	0.974	SYNONYMOUS_CODING Dh44 UPSTREAM Fst
2L	9154243	2L_9154243_DEL [dm3] 2L_9154243_DEL [dm6]	CACGG	C	3.695e^-4	0.974	INTRON CG32982
2L	9154252	2L_9154252_SNP [dm3] 2L_9154252_SNP [dm6]	A	C	3.695e^-4	0.974	INTRON CG32982
2R	6058950	2R_6058950_SNP [dm3] 2R_10171445_SNP [dm6]	T	C	3.704e^-4	0.974	INTRON KCNQ
3R	23477354	3R_23477354_SNP [dm3] 3R_27651632_SNP [dm6]	G	A	3.707e^-4	0.974	UPSTREAM tau INTRON tau	TF binding site mE1_TFBS_bab1
3L	11133801	3L_11133801_SNP [dm3] 3L_11140701_SNP [dm6]	C	T	3.713e^-4	0.974	INTRON CG32082
X	6381681	X_6381681_SNP [dm3] X_6487648_SNP [dm6]	A	G	3.719e^-4	0.974	INTRON CG42340
X	2448824	X_2448824_SNP [dm3] X_2554791_SNP [dm6]	A	T	3.726e^-4	0.974	INTRON Pdfr
2L	3938397	2L_3938397_SNP [dm3] 2L_3938397_SNP [dm6]	T	C	3.749e^-4	0.974	INTRON fred
2L	3938398	2L_3938398_DEL [dm3] 2L_3938398_DEL [dm6]	ATTTATGAGTATTTA...	A	3.749e^-4	0.974	INTRON fred
2L	3938419	2L_3938419_SNP [dm3] 2L_3938419_SNP [dm6]	A	T	3.749e^-4	0.974	INTRON fred
2L	3938437	2L_3938437_DEL [dm3] 2L_3938437_DEL [dm6]	TTGAAAACTCTATTTC...	T	3.749e^-4	0.974	INTRON fred
2L	3938463	2L_3938463_SNP [dm3] 2L_3938463_SNP [dm6]	A	T	3.749e^-4	0.974	INTRON fred
3L	14157919	3L_14157919_SNP [dm3] 3L_14164819_SNP [dm6]	C	A	3.755e^-4	0.974	INTERGENIC	regulatory region REDfly_CRMs
3L	14157929	3L_14157929_SNP [dm3] 3L_14164829_SNP [dm6]	T	A	3.755e^-4	0.974	INTERGENIC	regulatory region REDfly_CRMs
X	4690359	X_4690359_SNP [dm3] X_4796326_SNP [dm6]	G	C	3.756e^-4	0.974	DOWNSTREAM CG2861 INTERGENIC
2R	14187640	2R_14187640_SNP [dm3] 2R_18300135_SNP [dm6]	A	C	3.769e^-4	0.974	DOWNSTREAM CG18540 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3985015	2L_3985015_SNP [dm3] 2L_3985015_SNP [dm6]	C	A	3.773e^-4	0.974	INTRON fred
2R	14501006	2R_14501006_SNP [dm3] 2R_18613501_SNP [dm6]	G	T	3.780e^-4	0.974	SYNONYMOUS_CODING CG10927 UPSTREAM CG42697 DOWNSTREAM mRpS28	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3566365	3L_3566365_SNP [dm3] 3L_3566365_SNP [dm6]	A	G	3.782e^-4	0.974	INTRON Eip63E
3R	11355886	3R_11355886_SNP [dm3] 3R_15530164_SNP [dm6]	C	A	3.794e^-4	0.974	UTR_3_PRIME CG31296 DOWNSTREAM CG31296	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7879029	3L_7879029_INS [dm3] 3L_7885929_INS [dm6]	T	TT	3.796e^-4	0.974	INTRON CG32365
X	5118954	X_5118954_SNP [dm3] X_5224921_SNP [dm6]	C	T	3.803e^-4	0.974	INTRON CG15465 & 1 other
3L	16472634	3L_16472634_SNP [dm3] 3L_16479534_SNP [dm6]	A	G	3.803e^-4	0.974	INTRON CG33158 & 1 other
X	15312292	X_15312292_SNP [dm3] X_15418259_SNP [dm6]	A	C	3.818e^-4	0.974	INTRON Cngl
3R	27246568	3R_27246568_SNP [dm3] 3R_31420846_SNP [dm6]	C	T	3.822e^-4	0.974	INTRON Gprk2
3R	24488367	3R_24488367_SNP [dm3] 3R_28662645_SNP [dm6]	G	A	3.828e^-4	0.974	INTERGENIC
2R	11139686	2R_11139686_SNP [dm3] 2R_15252181_SNP [dm6]	T	C	3.829e^-4	0.974	UPSTREAM scb INTRON scb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	15985359	2R_15985359_SNP [dm3] 2R_20097854_SNP [dm6]	G	T	3.839e^-4	0.974	INTERGENIC
2R	15985361	2R_15985361_SNP [dm3] 2R_20097856_SNP [dm6]	G	A	3.839e^-4	0.974	INTERGENIC
3R	15786202	3R_15786202_SNP [dm3] 3R_19960480_SNP [dm6]	C	T	3.839e^-4	0.974	INTRON Hs6st
X	3544862	X_3544862_SNP [dm3] X_3650829_SNP [dm6]	A	C	3.841e^-4	0.974	INTRON AstA-R1
2R	14269468	2R_14269468_SNP [dm3] 2R_18381963_SNP [dm6]	G	T	3.844e^-4	0.974	UPSTREAM CG43202 DOWNSTREAM IM23 INTERGENIC
2R	14269470	2R_14269470_SNP [dm3] 2R_18381965_SNP [dm6]	C	A	3.844e^-4	0.974	UPSTREAM CG43202 DOWNSTREAM IM23 INTERGENIC
2R	18600730	2R_18600730_SNP [dm3] 2R_22713225_SNP [dm6]	A	G	3.880e^-4	0.974	SYNONYMOUS_CODING CG30268 DOWNSTREAM CG30275
3R	5464787	3R_5464787_DEL [dm3] 3R_9639065_DEL [dm6]	AA	A	3.898e^-4	0.974	INTRON Dh44
2R	16252012	2R_16252012_SNP [dm3] 2R_20364507_SNP [dm6]	G	T	3.910e^-4	0.974	INTERGENIC
2L	6715065	2L_6715065_SNP [dm3] 2L_6715065_SNP [dm6]	A	G	3.923e^-4	0.974	UTR_5_PRIME AkhR INTRON AkhR
2R	10182146	2R_10182146_SNP [dm3] 2R_14294641_SNP [dm6]	T	C	3.944e^-4	0.974	UTR_3_PRIME Ih INTRON Ih
X	13575989	X_13575989_SNP [dm3] X_13681956_SNP [dm6]	C	T	3.947e^-4	0.974	UPSTREAM CG11158 INTERGENIC
3L	18989181	3L_18989181_SNP [dm3] 3L_18996081_SNP [dm6]	T	G	3.948e^-4	0.974	UPSTREAM CG18135 INTRON CG18135	TF binding site mE1_TFBS_Trl
2R	9764940	2R_9764940_SNP [dm3] 2R_13877435_SNP [dm6]	G	A	3.950e^-4	0.974	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	2286520	X_2286520_SNP [dm3] X_2392487_SNP [dm6]	C	T	3.954e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2286538	X_2286538_INS [dm3] X_2392505_INS [dm6]	A	AA	3.954e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2286564	X_2286564_SNP [dm3] X_2392531_SNP [dm6]	T	G	3.954e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12388209	X_12388209_DEL [dm3] X_12494176_DEL [dm6]	AA	A	3.958e^-4	0.974	DOWNSTREAM Mks1 INTERGENIC
X	7583612	X_7583612_SNP [dm3] X_7689579_SNP [dm6]	T	G	3.964e^-4	0.974	SYNONYMOUS_CODING CHES-1-like	TF binding site mE1_TFBS_chinmo
2R	16644221	2R_16644221_SNP [dm3] 2R_20756716_SNP [dm6]	A	C	3.966e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_inv
3R	27244085	3R_27244085_SNP [dm3] 3R_31418363_SNP [dm6]	T	A	3.970e^-4	0.974	INTRON Gprk2
2R	3739755	2R_3739755_SNP [dm3] 2R_7852250_SNP [dm6]	G	C	3.984e^-4	0.974	INTRON Dgk
3R	24826189	3R_24826189_SNP [dm3] 3R_29000467_SNP [dm6]	T	C	4.003e^-4	0.974	INTRON wat
3R	24826213	3R_24826213_SNP [dm3] 3R_29000491_SNP [dm6]	T	C	4.003e^-4	0.974	INTRON wat
3R	24826222	3R_24826222_SNP [dm3] 3R_29000500_SNP [dm6]	A	G	4.003e^-4	0.974	INTRON wat
3L	6510713	3L_6510713_SNP [dm3] 3L_6517613_SNP [dm6]	A	G	4.016e^-4	0.974	INTRON sfl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15681862	2R_15681862_SNP [dm3] 2R_19794357_SNP [dm6]	T	A	4.018e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	14027069	3L_14027069_SNP [dm3] 3L_14033969_SNP [dm6]	T	C	4.024e^-4	0.974	SYNONYMOUS_CODING CG6650 UPSTREAM CG6661 DOWNSTREAM pncr014:3L	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14329167	3L_14329167_SNP [dm3] 3L_14336067_SNP [dm6]	T	C	4.024e^-4	0.974	INTRON fz
2L	13708918	2L_13708918_SNP [dm3] 2L_13708918_SNP [dm6]	G	A	4.044e^-4	0.974	INTRON CG31814 & 1 other	TF binding site mE1_TFBS_inv
2R	13807971	2R_13807971_SNP [dm3] 2R_17920466_SNP [dm6]	A	G	4.046e^-4	0.974	INTRON Elk
3R	3144406	3R_3144406_SNP [dm3] 3R_7318684_SNP [dm6]	G	A	4.052e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	7527636	2L_7527636_SNP [dm3] 2L_7527636_SNP [dm6]	C	T	4.056e^-4	0.974	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	7527674	2L_7527674_SNP [dm3] 2L_7527674_SNP [dm6]	T	C	4.056e^-4	0.974	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	10630593	3R_10630593_SNP [dm3] 3R_14804871_SNP [dm6]	A	T	4.061e^-4	0.974	UTR_3_PRIME btsz DOWNSTREAM CG14857
3L	1106627	3L_1106627_INS [dm3] 3L_1106627_INS [dm6]	G	GCCG	4.063e^-4	0.974	INTERGENIC
3L	1106631	3L_1106631_SNP [dm3] 3L_1106631_SNP [dm6]	C	G	4.063e^-4	0.974	INTERGENIC
3R	11352772	3R_11352772_SNP [dm3] 3R_15527050_SNP [dm6]	T	C	4.073e^-4	0.974	INTERGENIC
2R	19833852	2R_19833852_SNP [dm3] 2R_23946329_SNP [dm6]	T	G	4.078e^-4	0.974	DOWNSTREAM CG13565 INTRON Galphas
X	4690315	X_4690315_SNP [dm3] X_4796282_SNP [dm6]	G	A	4.082e^-4	0.974	DOWNSTREAM CG2861 INTERGENIC
X	2448798	X_2448798_SNP [dm3] X_2554765_SNP [dm6]	G	C	4.082e^-4	0.974	INTRON Pdfr
2R	7359001	2R_7359001_SNP [dm3] 2R_11471496_SNP [dm6]	G	A	4.083e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	4657029	3L_4657029_SNP [dm3] 3L_4657029_SNP [dm6]	A	G	4.084e^-4	0.974	INTRON axo
3R	12993769	3R_12993769_SNP [dm3] 3R_17168047_SNP [dm6]	G	A	4.089e^-4	0.974	INTRON Mur89F
2L	3327342	2L_3327342_SNP [dm3] 2L_3327342_SNP [dm6]	A	T	4.095e^-4	0.974	UPSTREAM CG33282 DOWNSTREAM CG33281 INTERGENIC
2L	3327362	2L_3327362_SNP [dm3] 2L_3327362_SNP [dm6]	G	A	4.095e^-4	0.974	UPSTREAM CG33282 DOWNSTREAM CG33281 INTERGENIC
2L	3327373	2L_3327373_SNP [dm3] 2L_3327373_SNP [dm6]	C	T	4.095e^-4	0.974	UPSTREAM CG33282 DOWNSTREAM CG33281 INTERGENIC
2L	3327379	2L_3327379_SNP [dm3] 2L_3327379_SNP [dm6]	G	T	4.095e^-4	0.974	UPSTREAM CG33282 DOWNSTREAM CG33281 INTERGENIC
X	20707700	X_20707700_SNP [dm3] X_20836673_SNP [dm6]	T	C	4.110e^-4	0.974	INTRON shakB
3L	3955878	3L_3955878_SNP [dm3] 3L_3955878_SNP [dm6]	A	T	4.115e^-4	0.974	UTR_3_PRIME CG12605 DOWNSTREAM CG12605
2L	18127038	2L_18127038_SNP [dm3] 2L_18127038_SNP [dm6]	A	C	4.116e^-4	0.974	INTRON CG5758
3R	9030867	3R_9030867_DEL [dm3] 3R_13205145_DEL [dm6]	AA	A	4.116e^-4	0.974	INTERGENIC
2R	13229210	2R_13229210_SNP [dm3] 2R_17341705_SNP [dm6]	G	C	4.129e^-4	0.974	INTRON mbl
2R	13229234	2R_13229234_SNP [dm3] 2R_17341729_SNP [dm6]	G	T	4.129e^-4	0.974	INTRON mbl
3R	25650575	3R_25650575_SNP [dm3] 3R_29824853_SNP [dm6]	T	A	4.148e^-4	0.974	SYNONYMOUS_CODING neo	TF binding site mE1_TFBS_cad
2R	12520872	2R_12520872_SNP [dm3] 2R_16633367_SNP [dm6]	A	G	4.152e^-4	0.974	SYNONYMOUS_CODING Alk	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	602761	3L_602761_SNP [dm3] 3L_602761_SNP [dm6]	T	A	4.157e^-4	0.974	INTRON CG13893
3L	3055314	3L_3055314_SNP [dm3] 3L_3055314_SNP [dm6]	G	A	4.171e^-4	0.974	SYNONYMOUS_CODING CG16753 DOWNSTREAM CG1271 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2R	7359242	2R_7359242_DEL [dm3] 2R_11471737_DEL [dm6]	GA	G	4.177e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	20428594	2L_20428594_SNP [dm3] 2L_20428594_SNP [dm6]	A	C	4.201e^-4	0.974	UPSTREAM CG31688 INTRON CG31688	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Ubx
2L	20428595	2L_20428595_SNP [dm3] 2L_20428595_SNP [dm6]	G	A	4.201e^-4	0.974	UPSTREAM CG31688 INTRON CG31688	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Ubx
X	13349755	X_13349755_SNP [dm3] X_13455722_SNP [dm6]	A	G	4.220e^-4	0.974	DOWNSTREAM CG34324 INTRON Neto
3L	3588176	3L_3588176_SNP [dm3] 3L_3588176_SNP [dm6]	T	C	4.229e^-4	0.974	INTRON Eip63E
2R	7020054	2R_7020054_SNP [dm3] 2R_11132549_SNP [dm6]	A	C	4.233e^-4	0.974	INTERGENIC
3R	15785901	3R_15785901_SNP [dm3] 3R_19960179_SNP [dm6]	A	C	4.245e^-4	0.974	INTRON Hs6st
3L	19595761	3L_19595761_SNP [dm3] 3L_19602661_SNP [dm6]	G	A	4.249e^-4	0.974	NON_SYNONYMOUS_CODING CG9368 UTR_3_PRIME CG9368 INTRON CG9368
3L	8697792	3L_8697792_SNP [dm3] 3L_8704692_SNP [dm6]	G	T	4.263e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_cad
3R	23749571	3R_23749571_SNP [dm3] 3R_27923849_SNP [dm6]	G	C	4.268e^-4	0.974	UPSTREAM snoRNA:Or-aca3 INTRON RpL4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23749576	3R_23749576_SNP [dm3] 3R_27923854_SNP [dm6]	T	C	4.268e^-4	0.974	UPSTREAM snoRNA:Or-aca3 INTRON RpL4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12337177	3L_12337177_SNP [dm3] 3L_12344077_SNP [dm6]	A	C	4.269e^-4	0.974	INTRON CrzR
3R	8553780	3R_8553780_SNP [dm3] 3R_12728058_SNP [dm6]	G	A	4.299e^-4	0.974	INTRON CR44231	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	3938392	2L_3938392_SNP [dm3] 2L_3938392_SNP [dm6]	G	T	4.301e^-4	0.974	INTRON fred
3L	2578010	3L_2578010_SNP [dm3] 3L_2578010_SNP [dm6]	C	T	4.313e^-4	0.974	INTRON msn
X	16824645	X_16824645_SNP [dm3] X_16930612_SNP [dm6]	A	G	4.314e^-4	0.974	INTRON CG4928
X	5864559	X_5864559_SNP [dm3] X_5970526_SNP [dm6]	T	C	4.324e^-4	0.974	INTRON Grip	TF binding site BDTNP1_TFBS_da
3R	23477590	3R_23477590_SNP [dm3] 3R_27651868_SNP [dm6]	A	T	4.326e^-4	0.974	UPSTREAM RpS10a INTRON tau	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3R	23477598	3R_23477598_SNP [dm3] 3R_27651876_SNP [dm6]	G	A	4.326e^-4	0.974	UPSTREAM RpS10a INTRON tau	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
X	3108141	X_3108141_SNP [dm3] X_3214108_SNP [dm6]	C	T	4.335e^-4	0.974	INTRON dnc
2L	15228147	2L_15228147_SNP [dm3] 2L_15228147_SNP [dm6]	T	G	4.355e^-4	0.974	DOWNSTREAM ZnT35C INTERGENIC
3R	17783501	3R_17783501_SNP [dm3] 3R_21957779_SNP [dm6]	A	T	4.357e^-4	0.974	INTRON Eip93F
3R	22472453	3R_22472453_SNP [dm3] 3R_26646731_SNP [dm6]	A	T	4.367e^-4	0.974	UTR_3_PRIME beat-VII
2R	5135478	2R_5135478_SNP [dm3] 2R_9247973_SNP [dm6]	T	G	4.403e^-4	0.974	UPSTREAM hig INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	18278661	2R_18278661_SNP [dm3] 2R_22391156_SNP [dm6]	G	A	4.411e^-4	0.974	SYNONYMOUS_CODING CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2R	19925204	2R_19925204_SNP [dm3] 2R_24037681_SNP [dm6]	C	G	4.415e^-4	0.974	UTR_5_PRIME Not11 UPSTREAM IntS1 DOWNSTREAM MAN1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	5616051	2L_5616051_SNP [dm3] 2L_5616051_SNP [dm6]	C	T	4.470e^-4	0.974	DOWNSTREAM CR44795 INTRON CG14010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3R	20918716	3R_20918716_SNP [dm3] 3R_25092994_SNP [dm6]	T	C	4.478e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14187733	2R_14187733_SNP [dm3] 2R_18300228_SNP [dm6]	G	T	4.502e^-4	0.974	DOWNSTREAM CG18540 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13229332	2R_13229332_INS [dm3] 2R_17341827_INS [dm6]	G	CA	4.506e^-4	0.974	INTRON mbl
2R	13229340	2R_13229340_SNP [dm3] 2R_17341835_SNP [dm6]	C	T	4.506e^-4	0.974	INTRON mbl
2L	2068780	2L_2068780_SNP [dm3] 2L_2068780_SNP [dm6]	A	G	4.508e^-4	0.974	INTRON dpr3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24826153	3R_24826153_SNP [dm3] 3R_29000431_SNP [dm6]	C	T	4.516e^-4	0.974	INTRON wat
3R	24826156	3R_24826156_SNP [dm3] 3R_29000434_SNP [dm6]	G	A	4.516e^-4	0.974	INTRON wat
3R	24826157	3R_24826157_SNP [dm3] 3R_29000435_SNP [dm6]	C	G	4.516e^-4	0.974	INTRON wat
3R	24826160	3R_24826160_SNP [dm3] 3R_29000438_SNP [dm6]	C	T	4.516e^-4	0.974	INTRON wat
3R	24826179	3R_24826179_SNP [dm3] 3R_29000457_SNP [dm6]	T	A	4.516e^-4	0.974	INTRON wat
3R	24826185	3R_24826185_SNP [dm3] 3R_29000463_SNP [dm6]	C	T	4.516e^-4	0.974	INTRON wat
3R	18524116	3R_18524116_SNP [dm3] 3R_22698394_SNP [dm6]	C	T	4.525e^-4	0.974	UTR_5_PRIME Cyp6d4 DOWNSTREAM cd	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	12992004	3R_12992004_SNP [dm3] 3R_17166282_SNP [dm6]	G	C	4.531e^-4	0.974	INTRON Mur89F
X	10283806	X_10283806_INS [dm3] X_10389773_INS [dm6]	C	CC	4.540e^-4	0.974	INTRON flw
2R	17961385	2R_17961385_SNP [dm3] 2R_22073880_SNP [dm6]	C	T	4.549e^-4	0.974	SYNONYMOUS_CODING CG2921 UPSTREAM CG11474	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17961421	2R_17961421_SNP [dm3] 2R_22073916_SNP [dm6]	A	G	4.549e^-4	0.974	UPSTREAM CG11474 INTRON CG2921	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	23248192	3R_23248192_SNP [dm3] 3R_27422470_SNP [dm6]	G	A	4.550e^-4	0.974	INTRON side
3L	9293758	3L_9293758_INS [dm3] 3L_9300658_INS [dm6]	T	TCTT	4.558e^-4	0.974	INTERGENIC
2L	12151563	2L_12151563_SNP [dm3] 2L_12151563_SNP [dm6]	A	G	4.559e^-4	0.974	INTRON CG31760
3L	4377285	3L_4377285_INS [dm3] 3L_4377285_INS [dm6]	T	TT	4.565e^-4	0.974	DOWNSTREAM CR44360 INTRON DopEcR
3L	16076958	3L_16076958_SNP [dm3] 3L_16083858_SNP [dm6]	T	C	4.566e^-4	0.974	UPSTREAM CG13075 DOWNSTREAM CG33258 INTERGENIC
2L	12551501	2L_12551501_SNP [dm3] 2L_12551501_SNP [dm6]	C	G	4.578e^-4	0.974	INTERGENIC
2R	18598028	2R_18598028_SNP [dm3] 2R_22710523_SNP [dm6]	C	T	4.597e^-4	0.974	SYNONYMOUS_CODING CG30275 UTR_3_PRIME CG30275	TF binding site mE1_TFBS_sens
3R	3436852	3R_3436852_SNP [dm3] 3R_7611130_SNP [dm6]	G	A	4.608e^-4	0.974	INTRON CG34127
2L	12211482	2L_12211482_SNP [dm3] 2L_12211482_SNP [dm6]	A	C	4.610e^-4	0.974	INTRON aret
3L	443985	3L_443985_SNP [dm3] 3L_443985_SNP [dm6]	G	A	4.614e^-4	0.974	SYNONYMOUS_CODING klar	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	5069413	2R_5069413_SNP [dm3] 2R_9181908_SNP [dm6]	T	G	4.617e^-4	0.974	UPSTREAM ltd INTRON ltd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3463180	3L_3463180_SNP [dm3] 3L_3463180_SNP [dm6]	C	G	4.621e^-4	0.974	NON_SYNONYMOUS_CODING armi	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	3463181	3L_3463181_SNP [dm3] 3L_3463181_SNP [dm6]	A	C	4.621e^-4	0.974	NON_SYNONYMOUS_CODING armi	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	19435647	3R_19435647_SNP [dm3] 3R_23609925_SNP [dm6]	C	A	4.622e^-4	0.974	INTRON CG31145
X	20753424	X_20753424_SNP [dm3] X_20882397_SNP [dm6]	A	G	4.627e^-4	0.974	SYNONYMOUS_CODING I-3 INTRON shakB
2R	11021119	2R_11021119_SNP [dm3] 2R_15133614_SNP [dm6]	A	G	4.630e^-4	0.974	INTRON chn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	10795352	2L_10795352_SNP [dm3] 2L_10795352_SNP [dm6]	C	A	4.630e^-4	0.974	INTRON CG31869	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	14571052	3L_14571052_SNP [dm3] 3L_14577952_SNP [dm6]	C	A	4.630e^-4	0.974	INTERGENIC
3L	11005868	3L_11005868_SNP [dm3] 3L_11012768_SNP [dm6]	C	T	4.639e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	1831668	3L_1831668_INS [dm3] 3L_1831668_INS [dm6]	C	CC	4.647e^-4	0.974	SPLICE_SITE_REGION Cpr62Ba UTR_5_PRIME Cpr62Ba DOWNSTREAM Cpr62Bb
3R	14324458	3R_14324458_SNP [dm3] 3R_18498736_SNP [dm6]	G	T	4.652e^-4	0.974	INTRON fru
3R	18903945	3R_18903945_SNP [dm3] 3R_23078223_SNP [dm6]	G	T	4.653e^-4	0.974	INTRON CG13830
2L	9153594	2L_9153594_SNP [dm3] 2L_9153594_SNP [dm6]	T	G	4.655e^-4	0.974	INTRON CG32982
3L	444035	3L_444035_SNP [dm3] 3L_444035_SNP [dm6]	T	A	4.666e^-4	0.974	NON_SYNONYMOUS_CODING klar	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	24488385	3R_24488385_SNP [dm3] 3R_28662663_SNP [dm6]	C	T	4.668e^-4	0.974	INTERGENIC
3L	3518498	3L_3518498_SNP [dm3] 3L_3518498_SNP [dm6]	C	T	4.669e^-4	0.974	INTRON Eip63E
3R	11424566	3R_11424566_SNP [dm3] 3R_15598844_SNP [dm6]	T	C	4.674e^-4	0.974	INTERGENIC
X	6381642	X_6381642_INS [dm3] X_6487609_INS [dm6]	A	AT	4.680e^-4	0.974	INTRON CG42340
3R	17845251	3R_17845251_SNP [dm3] 3R_22019529_SNP [dm6]	A	T	4.681e^-4	0.974	UTR_3_PRIME CG6455 UPSTREAM CG6439 DOWNSTREAM CG6455	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3L	770362	3L_770362_SNP [dm3] 3L_770362_SNP [dm6]	T	C	4.691e^-4	0.974	UPSTREAM tRNA:CR32481 DOWNSTREAM tRNA:CR32480 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17767749	2L_17767749_SNP [dm3] 2L_17767749_SNP [dm6]	G	A	4.706e^-4	0.974	INTRON CadN
2R	11163875	2R_11163875_SNP [dm3] 2R_15276370_SNP [dm6]	A	T	4.720e^-4	0.974	INTRON Trpm
2R	18295551	2R_18295551_SNP [dm3] 2R_22408046_SNP [dm6]	C	T	4.723e^-4	0.974	UTR_3_PRIME CG6044 UPSTREAM ventrally-expressed-protein-D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	17234115	3R_17234115_SNP [dm3] 3R_21408393_SNP [dm6]	C	A	4.723e^-4	0.974	UPSTREAM CheB93b DOWNSTREAM CheB93a INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	8363811	3R_8363811_SNP [dm3] 3R_12538089_SNP [dm6]	G	A	4.728e^-4	0.974	INTRON Octbeta3R
X	18391766	X_18391766_SNP [dm3] X_18497733_SNP [dm6]	G	T	4.730e^-4	0.974	INTRON GalNAc-T2
2L	12802871	2L_12802871_SNP [dm3] 2L_12802871_SNP [dm6]	G	A	4.735e^-4	0.974	INTERGENIC
3R	18478054	3R_18478054_SNP [dm3] 3R_22652332_SNP [dm6]	C	T	4.741e^-4	0.974	UTR_5_PRIME CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7655877	3R_7655877_SNP [dm3] 3R_11830155_SNP [dm6]	T	A	4.746e^-4	0.974	INTRON CG6959
3R	20298039	3R_20298039_SNP [dm3] 3R_24472317_SNP [dm6]	A	C	4.769e^-4	0.974	INTERGENIC
3L	2462714	3L_2462714_SNP [dm3] 3L_2462714_SNP [dm6]	T	G	4.778e^-4	0.974	UPSTREAM CG45186 INTRON CG45186
3L	5097048	3L_5097048_SNP [dm3] 3L_5097048_SNP [dm6]	T	A	4.784e^-4	0.974	INTERGENIC
2L	22099884	2L_22099884_SNP [dm3] 2L_22099884_SNP [dm6]	A	G	4.788e^-4	0.974	INTERGENIC
3L	10689809	3L_10689809_SNP [dm3] 3L_10696709_SNP [dm6]	C	G	4.790e^-4	0.974	UTR_5_PRIME NijA
2L	13725211	2L_13725211_SNP [dm3] 2L_13725211_SNP [dm6]	C	T	4.798e^-4	0.974	INTERGENIC
2L	7985813	2L_7985813_SNP [dm3] 2L_7985813_SNP [dm6]	A	G	4.802e^-4	0.974	DOWNSTREAM pes INTRON CG7231	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	14501627	2R_14501627_SNP [dm3] 2R_18614122_SNP [dm6]	G	A	4.804e^-4	0.974	SYNONYMOUS_CODING CG10927 UPSTREAM CG5323 DOWNSTREAM mRpS28	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	11173048	2L_11173048_SNP [dm3] 2L_11173048_SNP [dm6]	A	G	4.806e^-4	0.974	INTRON Ca-beta
3R	5472815	3R_5472815_SNP [dm3] 3R_9647093_SNP [dm6]	T	G	4.815e^-4	0.974	SYNONYMOUS_CODING Dh44 UPSTREAM Fst
3L	7692845	3L_7692845_SNP [dm3] 3L_7699745_SNP [dm6]	A	T	4.827e^-4	0.974	SYNONYMOUS_CODING Ank2 INTRON CG32373
3R	3820769	3R_3820769_SNP [dm3] 3R_7995047_SNP [dm6]	A	G	4.843e^-4	0.974	INTRON CG2781
X	11742010	X_11742010_SNP [dm3] X_11847977_SNP [dm6]	A	G	4.846e^-4	0.974	INTERGENIC
3R	3588299	3R_3588299_SNP [dm3] 3R_7762577_SNP [dm6]	C	T	4.857e^-4	0.974	INTRON Sp7
3L	11339739	3L_11339739_SNP [dm3] 3L_11346639_SNP [dm6]	C	T	4.857e^-4	0.974	INTERGENIC
3L	3613387	3L_3613387_SNP [dm3] 3L_3613387_SNP [dm6]	G	A	4.860e^-4	0.974	INTRON CG10359
3L	3613618	3L_3613618_SNP [dm3] 3L_3613618_SNP [dm6]	A	G	4.860e^-4	0.974	INTRON CG10359
3R	26739474	3R_26739474_SNP [dm3] 3R_30913752_SNP [dm6]	T	A	4.861e^-4	0.974	INTRON Ptx1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18865730	2R_18865730_SNP [dm3] 2R_22978207_SNP [dm6]	T	C	4.866e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	16472924	3L_16472924_SNP [dm3] 3L_16479824_SNP [dm6]	C	T	4.866e^-4	0.974	INTRON CG33158 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	11427504	3L_11427504_SNP [dm3] 3L_11434404_SNP [dm6]	G	T	4.880e^-4	0.974	DOWNSTREAM CG6149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	11630200	3L_11630200_SNP [dm3] 3L_11637100_SNP [dm6]	T	A	4.886e^-4	0.974	INTRON CG32091
2R	19309771	2R_19309771_SNP [dm3] 2R_23422248_SNP [dm6]	C	G	4.890e^-4	0.974	SYNONYMOUS_CODING CG9815	TF binding site mE1_TFBS_chinmo
2R	14455342	2R_14455342_SNP [dm3] 2R_18567837_SNP [dm6]	G	T	4.891e^-4	0.974	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2R	4404118	2R_4404118_SNP [dm3] 2R_8516613_SNP [dm6]	T	C	4.893e^-4	0.974	INTRON mtt
3R	22526394	3R_22526394_SNP [dm3] 3R_26700672_SNP [dm6]	A	G	4.911e^-4	0.974	SYNONYMOUS_CODING amon
3R	26083457	3R_26083457_SNP [dm3] 3R_30257735_SNP [dm6]	T	A	4.913e^-4	0.974	INTERGENIC
3L	3846855	3L_3846855_SNP [dm3] 3L_3846855_SNP [dm6]	T	A	4.919e^-4	0.974	INTRON Awh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
X	4692789	X_4692789_SNP [dm3] X_4798756_SNP [dm6]	C	G	4.921e^-4	0.974	NON_SYNONYMOUS_CODING CG2861
3L	11116792	3L_11116792_SNP [dm3] 3L_11123692_SNP [dm6]	C	A	4.945e^-4	0.974	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11116873	3L_11116873_SNP [dm3] 3L_11123773_SNP [dm6]	A	G	4.945e^-4	0.974	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12268989	2L_12268989_MNP [dm3] 2L_12268989_MNP [dm6]	ACAACA	TTGTGT	4.947e^-4	0.974	INTRON aret
2L	12268996	2L_12268996_SNP [dm3] 2L_12268996_SNP [dm6]	G	C	4.947e^-4	0.974	INTRON aret
2L	12269000	2L_12269000_SNP [dm3] 2L_12269000_SNP [dm6]	A	G	4.947e^-4	0.974	INTRON aret
2L	12269003	2L_12269003_SNP [dm3] 2L_12269003_SNP [dm6]	T	A	4.947e^-4	0.974	INTRON aret
3R	27211696	3R_27211696_SNP [dm3] 3R_31385974_SNP [dm6]	C	T	4.948e^-4	0.974	INTRON CG1607
2R	7837387	2R_7837387_SNP [dm3] 2R_11949882_SNP [dm6]	A	G	4.988e^-4	0.974	INTRON CG13188
2L	7520845	2L_7520845_SNP [dm3] 2L_7520845_SNP [dm6]	G	A	4.990e^-4	0.974	DOWNSTREAM CR44082 INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	16821864	2L_16821864_SNP [dm3] 2L_16821864_SNP [dm6]	G	A	4.996e^-4	0.974	SYNONYMOUS_CODING Cas UPSTREAM CG13280 INTRON mdy
3R	9028502	3R_9028502_SNP [dm3] 3R_13202780_SNP [dm6]	G	T	5.003e^-4	0.974	INTERGENIC
3R	16991774	3R_16991774_SNP [dm3] 3R_21166052_SNP [dm6]	C	T	5.006e^-4	0.974	DOWNSTREAM CG5810 INTRON SNF4Agamma & 1 other
2R	6354251	2R_6354251_SNP [dm3] 2R_10466746_SNP [dm6]	G	C	5.011e^-4	0.974	SYNONYMOUS_CODING Caf1-105	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6354443	2R_6354443_SNP [dm3] 2R_10466938_SNP [dm6]	C	A	5.011e^-4	0.974	NON_SYNONYMOUS_CODING Caf1-105	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7423080	3L_7423080_SNP [dm3] 3L_7429980_SNP [dm6]	T	A	5.017e^-4	0.974	INTRON CG42458	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3R	12993216	3R_12993216_SNP [dm3] 3R_17167494_SNP [dm6]	T	A	5.018e^-4	0.974	INTRON Mur89F
3L	9644678	3L_9644678_SNP [dm3] 3L_9651578_SNP [dm6]	T	A	5.034e^-4	0.974	INTRON fry & 1 other
2L	5749615	2L_5749615_SNP [dm3] 2L_5749615_SNP [dm6]	G	T	5.043e^-4	0.974	INTRON CG11030	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	3754215	X_3754215_SNP [dm3] X_3860182_SNP [dm6]	A	T	5.051e^-4	0.974	EXON roX1	TF binding site BDTNP1_TFBS_dl
3R	3440869	3R_3440869_SNP [dm3] 3R_7615147_SNP [dm6]	A	T	5.057e^-4	0.974	INTRON CG34127
2R	9799207	2R_9799207_SNP [dm3] 2R_13911702_SNP [dm6]	G	T	5.071e^-4	0.974	UPSTREAM shot INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	19646096	X_19646096_SNP [dm3] X_19752063_SNP [dm6]	G	A	5.076e^-4	0.974	INTRON Pmp70	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	2136880	3R_2136880_SNP [dm3] 3R_6311158_SNP [dm6]	G	A	5.078e^-4	0.974	UPSTREAM Osi17 DOWNSTREAM CG31560 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	2136881	3R_2136881_SNP [dm3] 3R_6311159_SNP [dm6]	T	A	5.078e^-4	0.974	UPSTREAM Osi17 DOWNSTREAM CG31560 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	4483950	2L_4483950_SNP [dm3] 2L_4483950_SNP [dm6]	G	A	5.086e^-4	0.974	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11348894	2L_11348894_MNP [dm3] 2L_11348894_MNP [dm6]	GAG	ACA	5.088e^-4	0.974	INTERGENIC	regulatory region REDfly_CRMs
2R	12397446	2R_12397446_SNP [dm3] 2R_16509941_SNP [dm6]	G	A	5.103e^-4	0.974	INTRON Sema-2a
3R	14369059	3R_14369059_SNP [dm3] 3R_18543337_SNP [dm6]	C	T	5.111e^-4	0.974	INTRON fru
3R	12798006	3R_12798006_SNP [dm3] 3R_16972284_SNP [dm6]	C	G	5.125e^-4	0.974	UPSTREAM Abd-B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_eve mE1_TFBS_HSA
3R	2168589	3R_2168589_SNP [dm3] 3R_6342867_SNP [dm6]	T	G	5.125e^-4	0.974	UTR_3_PRIME CG17917 UPSTREAM CG10298
3L	8127065	3L_8127065_SNP [dm3] 3L_8133965_SNP [dm6]	T	C	5.132e^-4	0.974	SYNONYMOUS_CODING CG7504
3L	3885927	3L_3885927_SNP [dm3] 3L_3885927_SNP [dm6]	G	T	5.139e^-4	0.974	INTERGENIC
3L	17931837	3L_17931837_SNP [dm3] 3L_17938737_SNP [dm6]	G	A	5.141e^-4	0.974	INTRON CG43174
3L	18624065	3L_18624065_SNP [dm3] 3L_18630965_SNP [dm6]	C	T	5.152e^-4	0.974	INTRON MYPT-75D	TF binding site mE1_TFBS_HSA
3L	4483643	3L_4483643_SNP [dm3] 3L_4483643_SNP [dm6]	C	A	5.155e^-4	0.974	SYNONYMOUS_CODING CG11350
3L	10736546	3L_10736546_SNP [dm3] 3L_10743446_SNP [dm6]	A	T	5.166e^-4	0.974	INTERGENIC
X	9754750	X_9754750_DEL [dm3] X_9860717_DEL [dm6]	GCA	AG	5.169e^-4	0.974	INTERGENIC
2L	9529924	2L_9529924_SNP [dm3] 2L_9529924_SNP [dm6]	T	C	5.171e^-4	0.974	DOWNSTREAM CG31883 INTRON Oatp30B
2L	9354183	2L_9354183_SNP [dm3] 2L_9354183_SNP [dm6]	T	A	5.177e^-4	0.974	INTERGENIC
3R	2247658	3R_2247658_SNP [dm3] 3R_6421936_SNP [dm6]	A	C	5.179e^-4	0.974	INTRON gpp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	27247026	3R_27247026_SNP [dm3] 3R_31421304_SNP [dm6]	C	T	5.190e^-4	0.974	INTRON Gprk2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11748386	3L_11748386_SNP [dm3] 3L_11755286_SNP [dm6]	T	C	5.196e^-4	0.974	INTRON CG6024
2R	8134009	2R_8134009_SNP [dm3] 2R_12246504_SNP [dm6]	C	T	5.203e^-4	0.974	DOWNSTREAM CR44315 INTERGENIC
2R	15857388	2R_15857388_SNP [dm3] 2R_19969883_SNP [dm6]	T	G	5.212e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	10798906	2L_10798906_SNP [dm3] 2L_10798906_SNP [dm6]	C	A	5.238e^-4	0.974	INTRON CG31869
3R	9018556	3R_9018556_DEL [dm3] 3R_13192834_DEL [dm6]	TAAGCAGCTT	T	5.239e^-4	0.974	DOWNSTREAM CG8141 INTERGENIC
3L	11137699	3L_11137699_SNP [dm3] 3L_11144599_SNP [dm6]	C	T	5.240e^-4	0.974	INTRON CG32082	TF binding site mE1_TFBS_HSA
2L	14869824	2L_14869824_SNP [dm3] 2L_14869824_SNP [dm6]	T	C	5.241e^-4	0.974	DOWNSTREAM CG4480 INTERGENIC
3R	17234094	3R_17234094_SNP [dm3] 3R_21408372_SNP [dm6]	G	A	5.247e^-4	0.974	UPSTREAM CheB93b DOWNSTREAM CheB93a INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	16033120	3L_16033120_SNP [dm3] 3L_16040020_SNP [dm6]	C	T	5.250e^-4	0.974	UTR_5_PRIME th	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
3L	14063854	3L_14063854_SNP [dm3] 3L_14070754_SNP [dm6]	A	G	5.253e^-4	0.974	UTR_3_PRIME CG32138 DOWNSTREAM CG32138
3R	10162468	3R_10162468_SNP [dm3] 3R_14336746_SNP [dm6]	A	T	5.275e^-4	0.974	INTRON NK7.1	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	19274664	2R_19274664_SNP [dm3] 2R_23387141_SNP [dm6]	T	A	5.278e^-4	0.974	SYNONYMOUS_CODING eIF2B-delta UPSTREAM CG30415	TF binding site mE1_TFBS_HSA
2R	8904564	2R_8904564_SNP [dm3] 2R_13017059_SNP [dm6]	T	G	5.279e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	18391039	3R_18391039_SNP [dm3] 3R_22565317_SNP [dm6]	A	G	5.289e^-4	0.974	INTERGENIC
3R	7971783	3R_7971783_SNP [dm3] 3R_12146061_SNP [dm6]	G	A	5.315e^-4	0.974	INTRON dpr15
2R	6119734	2R_6119734_SNP [dm3] 2R_10232229_SNP [dm6]	G	T	5.319e^-4	0.974	SYNONYMOUS_CODING Hr46 UTR_3_PRIME CG12912 INTRON Hr46	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	8649477	3L_8649477_SNP [dm3] 3L_8656377_SNP [dm6]	A	G	5.320e^-4	0.974	INTERGENIC
3L	10736575	3L_10736575_SNP [dm3] 3L_10743475_SNP [dm6]	A	C	5.330e^-4	0.974	INTERGENIC
2L	5259248	2L_5259248_SNP [dm3] 2L_5259248_SNP [dm6]	G	A	5.338e^-4	0.974	INTRON tkv EXON CR44744	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9153407	2L_9153407_DEL [dm3] 2L_9153407_DEL [dm6]	CGCT	C	5.343e^-4	0.974	INTRON CG32982
2R	2569357	2R_2569357_SNP [dm3] 2R_6681852_SNP [dm6]	T	C	5.348e^-4	0.974	DOWNSTREAM CR44165 INTRON CG9422 EXON CR44164
2R	2569359	2R_2569359_SNP [dm3] 2R_6681854_SNP [dm6]	A	T	5.348e^-4	0.974	DOWNSTREAM CR44165 INTRON CG9422 EXON CR44164
3R	14761339	3R_14761339_SNP [dm3] 3R_18935617_SNP [dm6]	A	T	5.349e^-4	0.974	INTRON CG42613
3R	26394899	3R_26394899_SNP [dm3] 3R_30569177_SNP [dm6]	G	C	5.356e^-4	0.974	INTRON tmod	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26394906	3R_26394906_SNP [dm3] 3R_30569184_SNP [dm6]	T	C	5.356e^-4	0.974	INTRON tmod	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6293913	2L_6293913_SNP [dm3] 2L_6293913_SNP [dm6]	T	A	5.357e^-4	0.974	INTRON Ddr
3R	16085006	3R_16085006_SNP [dm3] 3R_20259284_SNP [dm6]	C	T	5.358e^-4	0.974	INTRON cic
X	2286576	X_2286576_SNP [dm3] X_2392543_SNP [dm6]	A	T	5.361e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	5730320	3R_5730320_SNP [dm3] 3R_9904598_SNP [dm6]	A	G	5.381e^-4	0.974	INTRON Glut4EF
2R	9425477	2R_9425477_SNP [dm3] 2R_13537972_SNP [dm6]	C	T	5.381e^-4	0.974	SYNONYMOUS_CODING CG6145	TF binding site mE1_TFBS_cad
2L	19931075	2L_19931075_SNP [dm3] 2L_19931075_SNP [dm6]	A	G	5.387e^-4	0.974	INTRON sick
2L	5503040	2L_5503040_SNP [dm3] 2L_5503040_SNP [dm6]	T	C	5.388e^-4	0.974	INTERGENIC
3R	3459670	3R_3459670_SNP [dm3] 3R_7633948_SNP [dm6]	T	C	5.394e^-4	0.974	INTRON CG34127
3L	3588186	3L_3588186_SNP [dm3] 3L_3588186_SNP [dm6]	T	C	5.407e^-4	0.974	INTRON Eip63E
2L	2405105	2L_2405105_SNP [dm3] 2L_2405105_SNP [dm6]	A	T	5.428e^-4	0.974	INTRON VGlut
3L	7448301	3L_7448301_SNP [dm3] 3L_7455201_SNP [dm6]	C	T	5.429e^-4	0.974	UPSTREAM ppk26 DOWNSTREAM CG42458 INTERGENIC
3L	8444133	3L_8444133_SNP [dm3] 3L_8451033_SNP [dm6]	C	A	5.433e^-4	0.974	INTRON Gug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	18245214	3L_18245214_SNP [dm3] 3L_18252114_SNP [dm6]	C	T	5.436e^-4	0.974	SYNONYMOUS_CODING CheA75a
3R	23254919	3R_23254919_SNP [dm3] 3R_27429197_SNP [dm6]	C	T	5.458e^-4	0.974	INTRON side
3L	4735799	3L_4735799_SNP [dm3] 3L_4735799_SNP [dm6]	T	A	5.466e^-4	0.974	INTRON RhoGEF64C
X	7441338	X_7441338_SNP [dm3] X_7547305_SNP [dm6]	G	A	5.474e^-4	0.974	INTRON CG32719
3L	7002889	3L_7002889_SNP [dm3] 3L_7009789_SNP [dm6]	G	T	5.487e^-4	0.974	INTRON Mp
3L	4218870	3L_4218870_SNP [dm3] 3L_4218870_SNP [dm6]	C	T	5.494e^-4	0.974	SYNONYMOUS_CODING CG43367	TF binding site mE1_TFBS_sens
3R	19127782	3R_19127782_SNP [dm3] 3R_23302060_SNP [dm6]	A	G	5.495e^-4	0.974	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10630735	3R_10630735_SNP [dm3] 3R_14805013_SNP [dm6]	A	T	5.495e^-4	0.974	UTR_3_PRIME btsz DOWNSTREAM CG14857
2L	9582594	2L_9582594_SNP [dm3] 2L_9582594_SNP [dm6]	C	G	5.497e^-4	0.974	UPSTREAM gcm INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2R	19645347	2R_19645347_SNP [dm3] 2R_23757824_SNP [dm6]	T	C	5.497e^-4	0.974	SYNONYMOUS_CODING CG9850
X	4798996	X_4798996_SNP [dm3] X_4904963_SNP [dm6]	T	C	5.497e^-4	0.974	INTRON CG42594	TF binding site mE1_TFBS_chinmo
2R	11900267	2R_11900267_SNP [dm3] 2R_16012762_SNP [dm6]	G	C	5.498e^-4	0.974	SYNONYMOUS_CODING CG8389	TF binding site BDTNP1_TFBS_sna
2L	2323022	2L_2323022_SNP [dm3] 2L_2323022_SNP [dm6]	A	G	5.502e^-4	0.974	INTRON CG9967 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11450301	3L_11450301_SNP [dm3] 3L_11457201_SNP [dm6]	G	T	5.519e^-4	0.974	SYNONYMOUS_CODING CG12289	TF binding site mE1_TFBS_HSA
3R	24988828	3R_24988828_SNP [dm3] 3R_29163106_SNP [dm6]	C	T	5.523e^-4	0.974	INTRON CG11897
3R	24988884	3R_24988884_SNP [dm3] 3R_29163162_SNP [dm6]	T	A	5.523e^-4	0.974	INTRON CG11897
2R	11035358	2R_11035358_SNP [dm3] 2R_15147853_SNP [dm6]	G	A	5.535e^-4	0.974	UPSTREAM CG7544 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	11424569	3R_11424569_SNP [dm3] 3R_15598847_SNP [dm6]	A	G	5.538e^-4	0.974	INTERGENIC
3R	11424578	3R_11424578_SNP [dm3] 3R_15598856_SNP [dm6]	A	T	5.538e^-4	0.974	INTERGENIC
X	18700374	X_18700374_SNP [dm3] X_18806341_SNP [dm6]	G	C	5.566e^-4	0.974	UPSTREAM CG7058 DOWNSTREAM Pk17E EXON CR44841	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	11483880	3R_11483880_SNP [dm3] 3R_15658158_SNP [dm6]	C	T	5.573e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	16555227	3L_16555227_SNP [dm3] 3L_16562127_SNP [dm6]	G	A	5.575e^-4	0.974	INTERGENIC
3R	22753990	3R_22753990_SNP [dm3] 3R_26928268_SNP [dm6]	A	G	5.580e^-4	0.974	INTRON sda
2L	18024693	2L_18024693_SNP [dm3] 2L_18024693_SNP [dm6]	G	A	5.584e^-4	0.974	INTRON rdo
2L	5674145	2L_5674145_INS [dm3] 2L_5674145_INS [dm6]	A	AA	5.586e^-4	0.974	INTERGENIC
2R	6348441	2R_6348441_SNP [dm3] 2R_10460936_SNP [dm6]	G	A	5.588e^-4	0.974	SYNONYMOUS_CODING Galphao UTR_5_PRIME Galphao	TF binding site mE1_TFBS_inv
X	14624401	X_14624401_INS [dm3] X_14730368_INS [dm6]	T	TT	5.590e^-4	0.974	INTRON NetB
3R	17234045	3R_17234045_SNP [dm3] 3R_21408323_SNP [dm6]	A	T	5.593e^-4	0.974	UTR_3_PRIME CheB93a UPSTREAM CheB93b	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	817669	3L_817669_INS [dm3] 3L_817669_INS [dm6]	T	TT	5.601e^-4	0.974	INTERGENIC
X	5865807	X_5865807_SNP [dm3] X_5971774_SNP [dm6]	A	G	5.603e^-4	0.974	INTRON Grip
X	5865853	X_5865853_SNP [dm3] X_5971820_SNP [dm6]	T	G	5.603e^-4	0.974	INTRON Grip
3L	19083618	3L_19083618_SNP [dm3] 3L_19090518_SNP [dm6]	G	T	5.604e^-4	0.974	UPSTREAM CR45386 INTERGENIC
2R	8905431	2R_8905431_SNP [dm3] 2R_13017926_SNP [dm6]	A	T	5.608e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	11514946	3R_11514946_SNP [dm3] 3R_15689224_SNP [dm6]	G	A	5.622e^-4	0.974	UTR_3_PRIME pxb DOWNSTREAM pxb
3R	26010684	3R_26010684_SNP [dm3] 3R_30184962_SNP [dm6]	T	C	5.641e^-4	0.974	UPSTREAM CR44262 DOWNSTREAM CG9747 INTERGENIC
3R	11352824	3R_11352824_SNP [dm3] 3R_15527102_SNP [dm6]	G	A	5.650e^-4	0.974	INTERGENIC
3R	22558116	3R_22558116_SNP [dm3] 3R_26732394_SNP [dm6]	T	A	5.656e^-4	0.974	INTERGENIC
2L	13644350	2L_13644350_SNP [dm3] 2L_13644350_SNP [dm6]	A	G	5.661e^-4	0.974	INTERGENIC
3R	9018414	3R_9018414_DEL [dm3] 3R_13192692_DEL [dm6]	CGAATCGAAGAAATATTTTA...	C	5.661e^-4	0.974	DOWNSTREAM CG8141 INTERGENIC
2R	18260070	2R_18260070_SNP [dm3] 2R_22372565_SNP [dm6]	T	C	5.673e^-4	0.974	INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl
2R	18260071	2R_18260071_SNP [dm3] 2R_22372566_SNP [dm6]	T	A	5.673e^-4	0.974	INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl
2R	18260089	2R_18260089_SNP [dm3] 2R_22372584_SNP [dm6]	A	C	5.673e^-4	0.974	INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl
2R	18260101	2R_18260101_SNP [dm3] 2R_22372596_SNP [dm6]	T	C	5.673e^-4	0.974	INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl
3R	9017226	3R_9017226_SNP [dm3] 3R_13191504_SNP [dm6]	T	G	5.676e^-4	0.974	UPSTREAM CG8141 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	9024924	3R_9024924_SNP [dm3] 3R_13199202_SNP [dm6]	G	A	5.676e^-4	0.974	INTERGENIC
2L	5940121	2L_5940121_SNP [dm3] 2L_5940121_SNP [dm6]	G	A	5.683e^-4	0.974	DOWNSTREAM dsf EXON CR45288
3L	7411553	3L_7411553_SNP [dm3] 3L_7418453_SNP [dm6]	A	G	5.691e^-4	0.974	INTERGENIC
3R	14529177	3R_14529177_SNP [dm3] 3R_18703455_SNP [dm6]	T	C	5.694e^-4	0.974	INTERGENIC
2R	10228422	2R_10228422_SNP [dm3] 2R_14340917_SNP [dm6]	T	G	5.700e^-4	0.974	INTRON Shroom
2R	18285092	2R_18285092_SNP [dm3] 2R_22397587_SNP [dm6]	A	C	5.701e^-4	0.974	INTRON babos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8501292	3R_8501292_DEL [dm3] 3R_12675570_DEL [dm6]	ATCTG	GAAA	5.706e^-4	0.974	DOWNSTREAM CG43630 & 1 other INTRON CG6188	TF binding site mE1_TFBS_cad
3L	4076847	3L_4076847_SNP [dm3] 3L_4076847_SNP [dm6]	C	T	5.710e^-4	0.974	SYNONYMOUS_CODING Gad1
3R	3144400	3R_3144400_SNP [dm3] 3R_7318678_SNP [dm6]	A	G	5.710e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	6511352	3L_6511352_SNP [dm3] 3L_6518252_SNP [dm6]	C	A	5.717e^-4	0.974	INTRON sfl
3R	16748492	3R_16748492_SNP [dm3] 3R_20922770_SNP [dm6]	A	T	5.735e^-4	0.974	INTRON CG31191 & 1 other
2R	6073805	2R_6073805_SNP [dm3] 2R_10186300_SNP [dm6]	T	C	5.737e^-4	0.974	INTRON KCNQ
3L	16053008	3L_16053008_SNP [dm3] 3L_16059908_SNP [dm6]	T	C	5.744e^-4	0.974	INTRON Mbs
2R	9458063	2R_9458063_SNP [dm3] 2R_13570558_SNP [dm6]	C	A	5.746e^-4	0.974	DOWNSTREAM CG42807 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
3R	9015106	3R_9015106_SNP [dm3] 3R_13189384_SNP [dm6]	A	G	5.747e^-4	0.974	UTR_3_PRIME CG14380
2L	8042145	2L_8042145_SNP [dm3] 2L_8042145_SNP [dm6]	C	A	5.747e^-4	0.974	DOWNSTREAM snoRNA:Psi28S-2648 & 1 other INTRON RpL36A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	8044311	2L_8044311_SNP [dm3] 2L_8044311_SNP [dm6]	A	G	5.747e^-4	0.974	INTRON CG7466	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	8045446	2L_8045446_SNP [dm3] 2L_8045446_SNP [dm6]	C	T	5.747e^-4	0.974	SYNONYMOUS_CODING CG7466
X	18700408	X_18700408_SNP [dm3] X_18806375_SNP [dm6]	G	A	5.754e^-4	0.974	UPSTREAM CG7058 & 1 other DOWNSTREAM Pk17E INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	4736552	3L_4736552_SNP [dm3] 3L_4736552_SNP [dm6]	C	A	5.760e^-4	0.974	INTRON RhoGEF64C
3L	4022662	3L_4022662_SNP [dm3] 3L_4022662_SNP [dm6]	C	T	5.769e^-4	0.974	DOWNSTREAM CG11594 INTRON Mul1
2L	4218294	2L_4218294_SNP [dm3] 2L_4218294_SNP [dm6]	C	A	5.777e^-4	0.974	INTRON ft
X	5758920	X_5758920_SNP [dm3] X_5864887_SNP [dm6]	A	G	5.780e^-4	0.974	SYNONYMOUS_CODING CG43137
2L	1837303	2L_1837303_SNP [dm3] 2L_1837303_SNP [dm6]	T	A	5.784e^-4	0.974	UTR_5_PRIME wry INTRON wry
3L	13375317	3L_13375317_SNP [dm3] 3L_13382217_SNP [dm6]	A	G	5.785e^-4	0.974	UPSTREAM CG14107 & 1 other INTERGENIC
2R	6181881	2R_6181881_SNP [dm3] 2R_10294376_SNP [dm6]	T	C	5.787e^-4	0.974	INTRON CAP	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3613582	3L_3613582_SNP [dm3] 3L_3613582_SNP [dm6]	C	T	5.794e^-4	0.974	INTRON CG10359
2R	13388553	2R_13388553_SNP [dm3] 2R_17501048_SNP [dm6]	T	C	5.808e^-4	0.974	INTERGENIC
2L	5806335	2L_5806335_SNP [dm3] 2L_5806335_SNP [dm6]	T	C	5.817e^-4	0.974	INTRON CG11034
2L	2262103	2L_2262103_SNP [dm3] 2L_2262103_SNP [dm6]	A	C	5.831e^-4	0.974	INTERGENIC
3R	13782952	3R_13782952_SNP [dm3] 3R_17957230_SNP [dm6]	C	T	5.831e^-4	0.974	INTRON cpo
2R	18036696	2R_18036696_SNP [dm3] 2R_22149191_SNP [dm6]	C	A	5.844e^-4	0.974	INTRON a
2L	6680348	2L_6680348_SNP [dm3] 2L_6680348_SNP [dm6]	G	A	5.848e^-4	0.974	SPLICE_SITE_REGION Nhe3 SYNONYMOUS_CODING Nhe3
3R	26602149	3R_26602149_SNP [dm3] 3R_30776427_SNP [dm6]	G	A	5.852e^-4	0.974	INTRON zfh1
2L	16821828	2L_16821828_SNP [dm3] 2L_16821828_SNP [dm6]	C	T	5.854e^-4	0.974	SYNONYMOUS_CODING Cas UPSTREAM CG13280 INTRON mdy
2R	13514876	2R_13514876_SNP [dm3] 2R_17627371_SNP [dm6]	C	A	5.862e^-4	0.974	INTRON CG10936
2R	13515923	2R_13515923_SNP [dm3] 2R_17628418_SNP [dm6]	G	A	5.862e^-4	0.974	DOWNSTREAM rhi INTRON CG10936
2R	16811084	2R_16811084_SNP [dm3] 2R_20923579_SNP [dm6]	A	G	5.868e^-4	0.974	NON_SYNONYMOUS_CODING Rx SPLICE_SITE_REGION Rx	TF binding site mE1_TFBS_chinmo
2L	7523756	2L_7523756_SNP [dm3] 2L_7523756_SNP [dm6]	T	C	5.870e^-4	0.974	INTRON RapGAP1
3L	14246790	3L_14246790_SNP [dm3] 3L_14253690_SNP [dm6]	G	T	5.880e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_cnc
3L	17904357	3L_17904357_SNP [dm3] 3L_17911257_SNP [dm6]	A	G	5.893e^-4	0.974	INTRON CG5290	TF binding site mE1_TFBS_HSA
3R	5726713	3R_5726713_SNP [dm3] 3R_9900991_SNP [dm6]	C	T	5.898e^-4	0.974	INTRON Glut4EF
2L	9582539	2L_9582539_SNP [dm3] 2L_9582539_SNP [dm6]	A	G	5.901e^-4	0.974	UPSTREAM gcm INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
2L	9582546	2L_9582546_SNP [dm3] 2L_9582546_SNP [dm6]	T	A	5.901e^-4	0.974	UPSTREAM gcm INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
2L	9582550	2L_9582550_SNP [dm3] 2L_9582550_SNP [dm6]	A	G	5.901e^-4	0.974	UPSTREAM gcm INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
2L	16882795	2L_16882795_SNP [dm3] 2L_16882795_SNP [dm6]	C	G	5.906e^-4	0.974	INTRON CG31743 & 1 other
2R	5506672	2R_5506672_SNP [dm3] 2R_9619167_SNP [dm6]	C	T	5.927e^-4	0.974	INTRON Mmp2
3L	11237510	3L_11237510_SNP [dm3] 3L_11244410_SNP [dm6]	T	C	5.930e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
X	9754781	X_9754781_SNP [dm3] X_9860748_SNP [dm6]	A	G	5.932e^-4	0.974	INTERGENIC
3L	15202488	3L_15202488_SNP [dm3] 3L_15209388_SNP [dm6]	A	C	5.934e^-4	0.974	DOWNSTREAM CG6888 INTERGENIC
X	6381633	X_6381633_DEL [dm3] X_6487600_DEL [dm6]	TTCTTTA	T	5.943e^-4	0.974	INTRON CG42340
3R	23557907	3R_23557907_SNP [dm3] 3R_27732185_SNP [dm6]	G	A	5.947e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16062644	3L_16062644_SNP [dm3] 3L_16069544_SNP [dm6]	T	C	5.947e^-4	0.974	INTRON Mbs
3L	12337105	3L_12337105_SNP [dm3] 3L_12344005_SNP [dm6]	T	G	5.955e^-4	0.974	INTRON CrzR
2L	7126501	2L_7126501_SNP [dm3] 2L_7126501_SNP [dm6]	C	T	5.964e^-4	0.974	INTRON Pvf3
2L	4219196	2L_4219196_SNP [dm3] 2L_4219196_SNP [dm6]	G	C	5.968e^-4	0.974	INTRON ft	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14071458	3L_14071458_INS [dm3] 3L_14078358_INS [dm6]	A	ATGCCTGCAAAGTCTTAA...	5.976e^-4	0.974	INTRON btl	regulatory region REDfly_CRMs
2L	1126059	2L_1126059_SNP [dm3] 2L_1126059_SNP [dm6]	C	T	5.978e^-4	0.974	INTRON Pino
3R	5726668	3R_5726668_SNP [dm3] 3R_9900946_SNP [dm6]	T	C	5.985e^-4	0.974	INTRON Glut4EF
2R	12505208	2R_12505208_SNP [dm3] 2R_16617703_SNP [dm6]	G	A	5.988e^-4	0.974	UPSTREAM CG5065 INTRON CG5065
2R	12505230	2R_12505230_SNP [dm3] 2R_16617725_SNP [dm6]	G	T	5.988e^-4	0.974	UPSTREAM CG5065 INTRON CG5065
3L	11235566	3L_11235566_SNP [dm3] 3L_11242466_SNP [dm6]	T	A	5.991e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2R	19917725	2R_19917725_SNP [dm3] 2R_24030202_SNP [dm6]	T	G	5.992e^-4	0.974	SYNONYMOUS_CODING CG3163 DOWNSTREAM CG30172	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	5201224	3R_5201224_SNP [dm3] 3R_9375502_SNP [dm6]	C	T	5.994e^-4	0.974	UPSTREAM FER INTRON FER	regulatory region REDfly_CRMs
2R	9598547	2R_9598547_SNP [dm3] 2R_13711042_SNP [dm6]	C	T	5.999e^-4	0.974	INTRON fas	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	10947929	3R_10947929_SNP [dm3] 3R_15122207_SNP [dm6]	G	A	6.001e^-4	0.974	INTRON CG42788
3L	19083611	3L_19083611_SNP [dm3] 3L_19090511_SNP [dm6]	T	C	6.004e^-4	0.974	UPSTREAM CR45386 INTERGENIC
2R	17789009	2R_17789009_SNP [dm3] 2R_21901504_SNP [dm6]	G	A	6.004e^-4	0.974	INTRON Fili	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13063542	3R_13063542_SNP [dm3] 3R_17237820_SNP [dm6]	G	A	6.005e^-4	0.974	INTRON beat-IIb
3R	16956226	3R_16956226_SNP [dm3] 3R_21130504_SNP [dm6]	C	G	6.020e^-4	0.974	NON_SYNONYMOUS_CODING Ice2 START_GAINED Ice2 UTR_5_PRIME Ice2 UPSTREAM Obp93a DOWNSTREAM CG5793	TF binding site mE1_TFBS_cad
2R	9314498	2R_9314498_SNP [dm3] 2R_13426993_SNP [dm6]	T	C	6.028e^-4	0.974	INTRON CG42321	TF binding site BDTNP1_TFBS_twi
3L	770520	3L_770520_SNP [dm3] 3L_770520_SNP [dm6]	C	T	6.034e^-4	0.974	DOWNSTREAM tRNA:CR32480 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15985334	2R_15985334_SNP [dm3] 2R_20097829_SNP [dm6]	T	C	6.038e^-4	0.974	INTERGENIC
3L	15641512	3L_15641512_SNP [dm3] 3L_15648412_SNP [dm6]	T	C	6.047e^-4	0.974	UPSTREAM CG43083 & 1 other DOWNSTREAM Eig71Ea INTERGENIC
3L	15641514	3L_15641514_SNP [dm3] 3L_15648414_SNP [dm6]	G	C	6.047e^-4	0.974	UPSTREAM CG43083 & 1 other DOWNSTREAM Eig71Ea INTERGENIC
3L	10748292	3L_10748292_SNP [dm3] 3L_10755192_SNP [dm6]	C	A	6.049e^-4	0.974	INTERGENIC
X	8171058	X_8171058_INS [dm3] X_8277025_INS [dm6]	T	TC	6.059e^-4	0.974	UTR_3_PRIME nAChRalpha3 DOWNSTREAM CG1636	TF binding site mE1_TFBS_HSA
3R	15890684	3R_15890684_SNP [dm3] 3R_20064962_SNP [dm6]	G	T	6.062e^-4	0.974	INTERGENIC
3R	19751927	3R_19751927_SNP [dm3] 3R_23926205_SNP [dm6]	T	C	6.069e^-4	0.974	SYNONYMOUS_CODING Ndc1 DOWNSTREAM CG13601	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9113299	3L_9113299_SNP [dm3] 3L_9120199_SNP [dm6]	C	T	6.086e^-4	0.974	INTRON bol
3L	9113306	3L_9113306_SNP [dm3] 3L_9120206_SNP [dm6]	C	G	6.086e^-4	0.974	INTRON bol
3L	19071470	3L_19071470_SNP [dm3] 3L_19078370_SNP [dm6]	C	T	6.086e^-4	0.974	INTRON Mkp3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
X	5889724	X_5889724_SNP [dm3] X_5995691_SNP [dm6]	A	G	6.099e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	14208359	2L_14208359_SNP [dm3] 2L_14208359_SNP [dm6]	A	T	6.100e^-4	0.974	INTRON Dyrk2
X	20434551	X_20434551_SNP [dm3] X_20563524_SNP [dm6]	C	A	6.105e^-4	0.974	INTRON RunxB
X	12791568	X_12791568_SNP [dm3] X_12897535_SNP [dm6]	G	A	6.123e^-4	0.974	UTR_3_PRIME CG32650 UPSTREAM Pde9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA
3L	2335729	3L_2335729_SNP [dm3] 3L_2335729_SNP [dm6]	T	G	6.134e^-4	0.974	INTRON MsR1
2R	6386962	2R_6386962_SNP [dm3] 2R_10499457_SNP [dm6]	G	A	6.134e^-4	0.974	DOWNSTREAM lola INTRON lola
X	3445050	X_3445050_SNP [dm3] X_3551017_SNP [dm6]	C	G	6.175e^-4	0.974	INTRON CG32791
X	13104181	X_13104181_SNP [dm3] X_13210148_SNP [dm6]	G	A	6.176e^-4	0.974	INTRON sno	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7364062	2R_7364062_SNP [dm3] 2R_11476557_SNP [dm6]	C	T	6.180e^-4	0.974	SYNONYMOUS_CODING inv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
3L	17882986	3L_17882986_SNP [dm3] 3L_17889886_SNP [dm6]	C	T	6.181e^-4	0.974	NON_SYNONYMOUS_CODING CG7402
X	5889656	X_5889656_SNP [dm3] X_5995623_SNP [dm6]	C	A	6.181e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	2659452	3L_2659452_SNP [dm3] 3L_2659452_SNP [dm6]	A	T	6.182e^-4	0.974	UPSTREAM CG33233 INTRON Fife	TF binding site mE1_TFBS_chinmo
3R	25624179	3R_25624179_SNP [dm3] 3R_29798457_SNP [dm6]	C	G	6.197e^-4	0.974	SYNONYMOUS_CODING CG7837	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9009475	3R_9009475_SNP [dm3] 3R_13183753_SNP [dm6]	G	A	6.208e^-4	0.974	INTERGENIC
3R	23749618	3R_23749618_SNP [dm3] 3R_27923896_SNP [dm6]	C	T	6.218e^-4	0.974	UPSTREAM snoRNA:Or-aca3 DOWNSTREAM CR45566 INTRON RpL4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7986387	2L_7986387_SNP [dm3] 2L_7986387_SNP [dm6]	A	T	6.222e^-4	0.974	SYNONYMOUS_CODING CG7231 DOWNSTREAM pes
2L	1311806	2L_1311806_SNP [dm3] 2L_1311806_SNP [dm6]	T	G	6.224e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	10004276	2R_10004276_SNP [dm3] 2R_14116771_SNP [dm6]	C	G	6.240e^-4	0.974	INTRON Prosap
2R	10004282	2R_10004282_SNP [dm3] 2R_14116777_SNP [dm6]	A	T	6.240e^-4	0.974	INTRON Prosap
2R	10004343	2R_10004343_SNP [dm3] 2R_14116838_SNP [dm6]	C	T	6.240e^-4	0.974	INTRON Prosap
2R	10004384	2R_10004384_SNP [dm3] 2R_14116879_SNP [dm6]	T	C	6.240e^-4	0.974	INTRON Prosap
2R	10004400	2R_10004400_SNP [dm3] 2R_14116895_SNP [dm6]	G	A	6.240e^-4	0.974	INTRON Prosap
2L	16450930	2L_16450930_SNP [dm3] 2L_16450930_SNP [dm6]	A	G	6.242e^-4	0.974	UTR_5_PRIME Idgf3 UPSTREAM Idgf3 DOWNSTREAM Idgf2	TF binding site mE1_TFBS_Trl
3L	11715678	3L_11715678_SNP [dm3] 3L_11722578_SNP [dm6]	T	C	6.251e^-4	0.974	INTRON Bmcp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21095985	3R_21095985_SNP [dm3] 3R_25270263_SNP [dm6]	G	T	6.260e^-4	0.974	SYNONYMOUS_CODING CG11889 START_GAINED CG11891 UTR_5_PRIME CG11891 UPSTREAM CR45214 DOWNSTREAM CR13656
X	3541139	X_3541139_SNP [dm3] X_3647106_SNP [dm6]	T	C	6.262e^-4	0.974	INTRON AstA-R1
3L	21968388	3L_21968388_SNP [dm3] 3L_21975288_SNP [dm6]	G	A	6.274e^-4	0.974	INTRON CG7470
2L	12059543	2L_12059543_SNP [dm3] 2L_12059543_SNP [dm6]	A	T	6.285e^-4	0.974	SYNONYMOUS_CODING Rab3-GAP
3L	11116816	3L_11116816_INS [dm3] 3L_11123716_INS [dm6]	T	TT	6.310e^-4	0.974	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11116847	3L_11116847_SNP [dm3] 3L_11123747_SNP [dm6]	A	G	6.310e^-4	0.974	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11116849	3L_11116849_SNP [dm3] 3L_11123749_SNP [dm6]	G	A	6.310e^-4	0.974	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	16062470	3L_16062470_SNP [dm3] 3L_16069370_SNP [dm6]	A	T	6.336e^-4	0.974	INTRON Mbs
3R	25490166	3R_25490166_INS [dm3] 3R_29664444_INS [dm6]	A	AA	6.339e^-4	0.974	UPSTREAM ppk21 INTERGENIC
3L	8683092	3L_8683092_SNP [dm3] 3L_8689992_SNP [dm6]	G	A	6.346e^-4	0.974	INTERGENIC
3R	24988908	3R_24988908_SNP [dm3] 3R_29163186_SNP [dm6]	C	T	6.350e^-4	0.974	INTRON CG11897
2L	9582607	2L_9582607_SNP [dm3] 2L_9582607_SNP [dm6]	T	C	6.359e^-4	0.974	UPSTREAM gcm INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	10305556	2R_10305556_SNP [dm3] 2R_14418051_SNP [dm6]	T	A	6.362e^-4	0.974	INTERGENIC
2R	8550593	2R_8550593_SNP [dm3] 2R_12663088_SNP [dm6]	C	G	6.374e^-4	0.974	UPSTREAM nemy INTRON nemy	TF binding site mE1_TFBS_cad
2L	15182240	2L_15182240_SNP [dm3] 2L_15182240_SNP [dm6]	C	A	6.381e^-4	0.974	INTRON CG4168	TF binding site mE1_TFBS_cad
2R	18706381	2R_18706381_SNP [dm3] 2R_22818876_SNP [dm6]	G	A	6.395e^-4	0.974	UTR_5_PRIME CG30271 INTRON CG30271	TF binding site mE1_TFBS_chinmo
X	20932716	X_20932716_SNP [dm3] X_21061689_SNP [dm6]	T	G	6.400e^-4	0.974	DOWNSTREAM CG32512 INTRON bves	TF binding site BDTNP1_TFBS_dl
3L	17900543	3L_17900543_SNP [dm3] 3L_17907443_SNP [dm6]	A	G	6.416e^-4	0.974	UTR_5_PRIME Prestin UPSTREAM CG14353
X	5447343	X_5447343_SNP [dm3] X_5553310_SNP [dm6]	G	T	6.417e^-4	0.974	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl
X	3431825	X_3431825_SNP [dm3] X_3537792_SNP [dm6]	A	C	6.418e^-4	0.974	INTRON CG32791
2L	11009768	2L_11009768_SNP [dm3] 2L_11009768_SNP [dm6]	G	C	6.427e^-4	0.974	UTR_3_PRIME Nup154 DOWNSTREAM Art8
3R	19302099	3R_19302099_SNP [dm3] 3R_23476377_SNP [dm6]	C	G	6.433e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	5238746	3L_5238746_SNP [dm3] 3L_5245646_SNP [dm6]	C	T	6.448e^-4	0.974	INTRON shep
2L	16450002	2L_16450002_SNP [dm3] 2L_16450002_SNP [dm6]	C	T	6.452e^-4	0.974	SYNONYMOUS_CODING Idgf2 UPSTREAM Idgf3
3R	17234057	3R_17234057_SNP [dm3] 3R_21408335_SNP [dm6]	C	A	6.453e^-4	0.974	UPSTREAM CheB93b DOWNSTREAM CheB93a INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	16062647	3L_16062647_SNP [dm3] 3L_16069547_SNP [dm6]	C	T	6.454e^-4	0.974	INTRON Mbs
X	2350315	X_2350315_SNP [dm3] X_2456282_SNP [dm6]	C	G	6.461e^-4	0.974	INTRON boi
2R	19063563	2R_19063563_INS [dm3] 2R_23176040_INS [dm6]	A	ACTGCGTTAAAAAGTCGAAA...	6.462e^-4	0.974	INTRON CG34371
2R	15712103	2R_15712103_SNP [dm3] 2R_19824598_SNP [dm6]	G	T	6.465e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_Trl
X	3754918	X_3754918_SNP [dm3] X_3860885_SNP [dm6]	T	C	6.475e^-4	0.974	EXON roX1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	9541019	3R_9541019_SNP [dm3] 3R_13715297_SNP [dm6]	T	A	6.494e^-4	0.974	UTR_5_PRIME CG34383	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11140569	3L_11140569_SNP [dm3] 3L_11147469_SNP [dm6]	A	G	6.498e^-4	0.974	INTRON CG32082
2R	1674537	2R_1674537_DEL [dm3] 2R_5787032_DEL [dm6]	GCTCTTAACGG...	G	6.507e^-4	0.974	INTERGENIC
3R	5322538	3R_5322538_SNP [dm3] 3R_9496816_SNP [dm6]	C	A	6.516e^-4	0.974	DOWNSTREAM RhoL & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
2R	15133627	2R_15133627_SNP [dm3] 2R_19246122_SNP [dm6]	C	T	6.518e^-4	0.974	INTERGENIC
2L	4912342	2L_4912342_SNP [dm3] 2L_4912342_SNP [dm6]	C	G	6.533e^-4	0.974	INTRON hoe1
3R	1983774	3R_1983774_SNP [dm3] 3R_6158052_SNP [dm6]	C	T	6.534e^-4	0.974	UPSTREAM CG31559 INTERGENIC
3L	7411563	3L_7411563_SNP [dm3] 3L_7418463_SNP [dm6]	G	A	6.540e^-4	0.974	INTERGENIC
X	16822816	X_16822816_SNP [dm3] X_16928783_SNP [dm6]	T	G	6.543e^-4	0.974	INTRON CG4928
X	4109749	X_4109749_SNP [dm3] X_4215716_SNP [dm6]	A	T	6.558e^-4	0.974	INTERGENIC
3R	10479369	3R_10479369_SNP [dm3] 3R_14653647_SNP [dm6]	T	A	6.560e^-4	0.974	INTRON l_3_L1231	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	3433194	3R_3433194_DEL [dm3] 3R_7607472_DEL [dm6]	AA	A	6.577e^-4	0.974	INTRON CG34127	TF binding site mE1_TFBS_inv
3R	6990873	3R_6990873_SNP [dm3] 3R_11165151_SNP [dm6]	A	C	6.592e^-4	0.974	NON_SYNONYMOUS_CODING Ugt86Dg	TF binding site mE1_TFBS_HSA
3R	23913296	3R_23913296_INS [dm3] 3R_28087574_INS [dm6]	C	CT	6.605e^-4	0.974	UTR_3_PRIME CG34362	TF binding site BDTNP1_TFBS_twi
3L	16822057	3L_16822057_SNP [dm3] 3L_16828957_SNP [dm6]	G	A	6.610e^-4	0.974	UTR_5_PRIME CG13024	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8012273	3L_8012273_SNP [dm3] 3L_8019173_SNP [dm6]	A	G	6.616e^-4	0.974	INTRON nmo
3L	8441306	3L_8441306_SNP [dm3] 3L_8448206_SNP [dm6]	C	G	6.627e^-4	0.974	INTRON CG6983	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	6716094	2L_6716094_SNP [dm3] 2L_6716094_SNP [dm6]	C	T	6.629e^-4	0.974	UTR_5_PRIME AkhR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb
X	12325308	X_12325308_SNP [dm3] X_12431275_SNP [dm6]	G	A	6.631e^-4	0.974	UPSTREAM Pkcdelta INTERGENIC
3L	15270595	3L_15270595_SNP [dm3] 3L_15277495_SNP [dm6]	T	G	6.666e^-4	0.974	INTERGENIC
3L	15270602	3L_15270602_SNP [dm3] 3L_15277502_SNP [dm6]	C	T	6.666e^-4	0.974	INTERGENIC
2R	16984992	2R_16984992_SNP [dm3] 2R_21097487_SNP [dm6]	T	A	6.684e^-4	0.974	UPSTREAM CG34396 & 1 other INTRON CG34396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	2287402	3R_2287402_INS [dm3] 3R_6461680_INS [dm6]	A	AA	6.712e^-4	0.974	INTERGENIC
2R	7126386	2R_7126386_SNP [dm3] 2R_11238881_SNP [dm6]	G	T	6.717e^-4	0.974	NON_SYNONYMOUS_CODING CG13216 DOWNSTREAM CG13215	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
3L	17875269	3L_17875269_SNP [dm3] 3L_17882169_SNP [dm6]	A	C	6.722e^-4	0.974	SYNONYMOUS_CODING CG7408	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens

Missing results

By genomic position
Variant impact
Gene name

pc_FL_PElem_HC phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results