DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.887e^-2)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1433 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	2105215	3L_2105215_SNP [dm3] 3L_2105215_SNP [dm6]	T	C	8.235e^-7	0.994	SYNONYMOUS_CODING sls	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	2105093	3L_2105093_SNP [dm3] 3L_2105093_SNP [dm6]	G	C	1.745e^-6	0.994	INTRON sls	TF binding site mE1_TFBS_chinmo
X	22047349	X_22047349_SNP [dm3] X_22645513_SNP [dm6]	T	C	2.649e^-6	0.994	INTERGENIC
3L	2105204	3L_2105204_SNP [dm3] 3L_2105204_SNP [dm6]	T	C	2.977e^-6	0.994	NON_SYNONYMOUS_CODING sls	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
X	22047303	X_22047303_SNP [dm3] X_22645467_SNP [dm6]	T	A	3.901e^-6	0.994	INTERGENIC
3L	2105103	3L_2105103_SNP [dm3] 3L_2105103_SNP [dm6]	A	C	6.292e^-6	0.994	INTRON sls	TF binding site mE1_TFBS_chinmo
3R	15973841	3R_15973841_SNP [dm3] 3R_20148119_SNP [dm6]	A	T	6.511e^-6	0.994	INTERGENIC
3L	2105272	3L_2105272_SNP [dm3] 3L_2105272_SNP [dm6]	G	T	8.351e^-6	0.994	SYNONYMOUS_CODING sls	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	16579910	2R_16579910_SNP [dm3] 2R_20692405_SNP [dm6]	A	T	8.406e^-6	0.994	UPSTREAM CG13438 EXON CR44659
2R	16579911	2R_16579911_SNP [dm3] 2R_20692406_SNP [dm6]	T	C	8.406e^-6	0.994	UPSTREAM CG13438 EXON CR44659
2R	8625573	2R_8625573_DEL [dm3] 2R_12738068_DEL [dm6]	TAGCCATGCTT...	T	1.101e^-5	0.994	INTRON CG42663
2L	1999806	2L_1999806_SNP [dm3] 2L_1999806_SNP [dm6]	G	T	1.945e^-5	0.994	UPSTREAM CR43464 INTRON CG33543
2L	4022929	2L_4022929_SNP [dm3] 2L_4022929_SNP [dm6]	A	T	2.590e^-5	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	5182286	3L_5182286_SNP [dm3] 3L_5189186_SNP [dm6]	C	T	2.704e^-5	0.994	INTRON shep
3L	5182353	3L_5182353_SNP [dm3] 3L_5189253_SNP [dm6]	C	G	2.704e^-5	0.994	INTRON shep
3L	11527364	3L_11527364_SNP [dm3] 3L_11534264_SNP [dm6]	C	T	2.762e^-5	0.994	INTRON Mob2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	11506707	2L_11506707_SNP [dm3] 2L_11506707_SNP [dm6]	T	C	2.818e^-5	0.994	SYNONYMOUS_CODING spz4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	2371970	2R_2371970_SNP [dm3] 2R_6484465_SNP [dm6]	G	T	2.959e^-5	0.994	INTERGENIC	transposable element FlyBase
X	13257039	X_13257039_SNP [dm3] X_13363006_SNP [dm6]	A	T	2.994e^-5	0.994	INTRON Syt12
2R	8625608	2R_8625608_SNP [dm3] 2R_12738103_SNP [dm6]	T	C	3.381e^-5	0.994	INTRON CG42663
2R	16488245	2R_16488245_SNP [dm3] 2R_20600740_SNP [dm6]	A	C	3.546e^-5	0.994	INTRON bl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16488246	2R_16488246_SNP [dm3] 2R_20600741_SNP [dm6]	G	C	3.546e^-5	0.994	INTRON bl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16488247	2R_16488247_INS [dm3] 2R_20600742_INS [dm6]	C	CA	3.546e^-5	0.994	INTRON bl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14142082	2L_14142082_SNP [dm3] 2L_14142082_SNP [dm6]	T	C	3.562e^-5	0.994	INTRON CG17341
2L	5266834	2L_5266834_SNP [dm3] 2L_5266834_SNP [dm6]	T	C	3.726e^-5	0.994	SYNONYMOUS_CODING Cyp4ac2 DOWNSTREAM Cyp4ac1 INTRON tkv
2L	13143997	2L_13143997_SNP [dm3] 2L_13143997_SNP [dm6]	T	A	3.759e^-5	0.994	UPSTREAM CG16978 INTERGENIC
2L	10346156	2L_10346156_SNP [dm3] 2L_10346156_SNP [dm6]	T	C	3.906e^-5	0.994	SYNONYMOUS_CODING CG5022
2L	13114940	2L_13114940_SNP [dm3] 2L_13114940_SNP [dm6]	G	A	4.039e^-5	0.994	INTERGENIC
2L	11344665	2L_11344665_SNP [dm3] 2L_11344665_SNP [dm6]	C	G	4.045e^-5	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	17087088	3R_17087088_SNP [dm3] 3R_21261366_SNP [dm6]	A	G	4.051e^-5	0.994	INTRON ETHR
3R	14188472	3R_14188472_SNP [dm3] 3R_18362750_SNP [dm6]	G	A	4.087e^-5	0.994	NON_SYNONYMOUS_CODING CG7669	TF binding site mE1_TFBS_cad
3R	11870743	3R_11870743_SNP [dm3] 3R_16045021_SNP [dm6]	G	A	4.107e^-5	0.994	SYNONYMOUS_CODING CG10407 DOWNSTREAM CG10264
X	21527077	X_21527077_SNP [dm3] X_21656050_SNP [dm6]	G	A	4.122e^-5	0.994	INTERGENIC	transposable element FlyBase
2L	5966209	2L_5966209_SNP [dm3] 2L_5966209_SNP [dm6]	T	G	4.170e^-5	0.994	SYNONYMOUS_CODING CG13992	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	7970720	X_7970720_SNP [dm3] X_8076687_SNP [dm6]	A	G	4.179e^-5	0.994	SYNONYMOUS_CODING CG1571	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18571469	2R_18571469_SNP [dm3] 2R_22683964_SNP [dm6]	A	G	4.348e^-5	0.994	DOWNSTREAM ppa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc
X	4636883	X_4636883_SNP [dm3] X_4742850_SNP [dm6]	A	G	4.398e^-5	0.994	INTERGENIC
2L	6855623	2L_6855623_SNP [dm3] 2L_6855623_SNP [dm6]	G	A	4.440e^-5	0.994	SYNONYMOUS_CODING l_2_k09022
3L	11473802	3L_11473802_SNP [dm3] 3L_11480702_SNP [dm6]	T	C	4.525e^-5	0.994	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	6787659	2L_6787659_SNP [dm3] 2L_6787659_SNP [dm6]	T	C	4.622e^-5	0.994	UPSTREAM nrv1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	10346168	2L_10346168_SNP [dm3] 2L_10346168_SNP [dm6]	G	A	4.869e^-5	0.994	SYNONYMOUS_CODING CG5022
X	6448698	X_6448698_SNP [dm3] X_6554665_SNP [dm6]	C	T	5.118e^-5	0.994	SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_chinmo
2R	5822548	2R_5822548_SNP [dm3] 2R_9935043_SNP [dm6]	G	C	5.192e^-5	0.994	INTRON Mef2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4196823	2L_4196823_SNP [dm3] 2L_4196823_SNP [dm6]	G	T	5.195e^-5	0.994	INTRON CG3714	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
3L	3633578	3L_3633578_SNP [dm3] 3L_3633578_SNP [dm6]	T	A	5.226e^-5	0.994	INTRON dar1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	18636445	X_18636445_DEL [dm3] X_18742412_DEL [dm6]	CC	C	5.299e^-5	0.994	INTERGENIC
2R	8625628	2R_8625628_SNP [dm3] 2R_12738123_SNP [dm6]	G	A	5.588e^-5	0.994	INTRON CG42663
2R	18571606	2R_18571606_SNP [dm3] 2R_22684101_SNP [dm6]	G	A	5.663e^-5	0.994	DOWNSTREAM ppa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13120453	3L_13120453_SNP [dm3] 3L_13127353_SNP [dm6]	G	A	5.877e^-5	0.994	INTERGENIC
X	13482055	X_13482055_INS [dm3] X_13588022_INS [dm6]	T	TT	5.989e^-5	0.994	INTRON Tango13
X	22056550	X_22056550_SNP [dm3] X_22654714_SNP [dm6]	G	A	6.156e^-5	0.994	INTERGENIC
3R	13789150	3R_13789150_SNP [dm3] 3R_17963428_SNP [dm6]	G	T	6.388e^-5	0.994	INTRON cpo
X	6448651	X_6448651_SNP [dm3] X_6554618_SNP [dm6]	G	C	6.463e^-5	0.994	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_chinmo
3L	16987512	3L_16987512_SNP [dm3] 3L_16994412_SNP [dm6]	T	G	6.514e^-5	0.994	DOWNSTREAM CG3764 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	16987692	3L_16987692_SNP [dm3] 3L_16994592_SNP [dm6]	G	A	6.514e^-5	0.994	DOWNSTREAM CG3764 & 1 other INTERGENIC
X	13482071	X_13482071_SNP [dm3] X_13588038_SNP [dm6]	A	G	6.619e^-5	0.994	INTRON Tango13
X	13482081	X_13482081_SNP [dm3] X_13588048_SNP [dm6]	C	G	6.619e^-5	0.994	INTRON Tango13
2R	13042332	2R_13042332_DEL [dm3] 2R_17154827_DEL [dm6]	TT	T	6.661e^-5	0.994	INTRON CG17290
3R	2704481	3R_2704481_SNP [dm3] 3R_6878759_SNP [dm6]	A	C	6.935e^-5	0.994	INTRON CR44931	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	7962865	X_7962865_MNP [dm3] X_8068832_MNP [dm6]	TCAA	GTTT	6.947e^-5	0.994	INTRON mys	TF binding site mE1_TFBS_cad
X	7962869	X_7962869_DEL [dm3] X_8068836_DEL [dm6]	ACGA	A	6.947e^-5	0.994	INTRON mys	TF binding site mE1_TFBS_cad
X	7962874	X_7962874_SNP [dm3] X_8068841_SNP [dm6]	A	C	6.947e^-5	0.994	INTRON mys	TF binding site mE1_TFBS_cad
2L	5265505	2L_5265505_SNP [dm3] 2L_5265505_SNP [dm6]	A	C	7.006e^-5	0.994	SYNONYMOUS_CODING Cyp4ac1 UPSTREAM Cyp4ac2 INTRON tkv	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11870917	3R_11870917_SNP [dm3] 3R_16045195_SNP [dm6]	G	A	7.021e^-5	0.994	DOWNSTREAM CG10264 INTRON CG10407
2L	1242374	2L_1242374_SNP [dm3] 2L_1242374_SNP [dm6]	C	A	7.236e^-5	0.994	UTR_3_PRIME CG5397 DOWNSTREAM CG5397	TF binding site mE1_TFBS_chinmo
3R	7112774	3R_7112774_SNP [dm3] 3R_11287052_SNP [dm6]	T	C	7.579e^-5	0.994	INTRON CR31386
3L	19131521	3L_19131521_SNP [dm3] 3L_19138421_SNP [dm6]	C	T	7.603e^-5	0.994	INTRON CG14082
2L	11331143	2L_11331143_SNP [dm3] 2L_11331143_SNP [dm6]	T	C	7.651e^-5	0.994	DOWNSTREAM CR44584 INTERGENIC
2L	11331145	2L_11331145_SNP [dm3] 2L_11331145_SNP [dm6]	T	A	7.651e^-5	0.994	DOWNSTREAM CR44584 INTERGENIC
2L	4198308	2L_4198308_SNP [dm3] 2L_4198308_SNP [dm6]	A	G	7.684e^-5	0.994	UPSTREAM CG3714 DOWNSTREAM ft INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16579815	2R_16579815_DEL [dm3] 2R_20692310_DEL [dm6]	TTCGCCCTGGGTTT...	T	7.775e^-5	0.994	UPSTREAM CG13438 EXON CR44659
2R	16579722	2R_16579722_SNP [dm3] 2R_20692217_SNP [dm6]	C	T	7.860e^-5	0.994	UPSTREAM CG13438 EXON CR44659
3R	11872094	3R_11872094_SNP [dm3] 3R_16046372_SNP [dm6]	C	T	7.988e^-5	0.994	UTR_3_PRIME ird5 UPSTREAM CG10407
3L	3150980	3L_3150980_SNP [dm3] 3L_3150980_SNP [dm6]	G	A	8.067e^-5	0.994	SYNONYMOUS_CODING BtbVII	TF binding site mE1_TFBS_chinmo
2L	8398469	2L_8398469_DEL [dm3] 2L_8398469_DEL [dm6]	GTTTTCGT	G	8.083e^-5	0.994	UPSTREAM CG13386 DOWNSTREAM CG13385 INTERGENIC
3R	25665920	3R_25665920_DEL [dm3] 3R_29840198_DEL [dm6]	CCTC	C	8.085e^-5	0.994	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2783086	2L_2783086_SNP [dm3] 2L_2783086_SNP [dm6]	G	A	8.157e^-5	0.994	SYNONYMOUS_CODING Syt1 UTR_3_PRIME Syt1
2L	11331146	2L_11331146_SNP [dm3] 2L_11331146_SNP [dm6]	T	C	8.219e^-5	0.994	DOWNSTREAM CR44584 INTERGENIC
X	13988861	X_13988861_SNP [dm3] X_14094828_SNP [dm6]	C	A	8.349e^-5	0.994	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	13403447	2R_13403447_SNP [dm3] 2R_17515942_SNP [dm6]	G	A	8.393e^-5	0.994	NON_SYNONYMOUS_CODING CG4853
2L	4196788	2L_4196788_SNP [dm3] 2L_4196788_SNP [dm6]	G	T	8.557e^-5	0.994	UTR_5_PRIME CG3714 INTRON CG3714	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
2R	16579808	2R_16579808_SNP [dm3] 2R_20692303_SNP [dm6]	T	C	8.566e^-5	0.994	UPSTREAM CG13438 EXON CR44659
2R	2372257	2R_2372257_SNP [dm3] 2R_6484752_SNP [dm6]	T	G	8.613e^-5	0.994	INTERGENIC	transposable element FlyBase
2L	5265511	2L_5265511_SNP [dm3] 2L_5265511_SNP [dm6]	A	G	8.617e^-5	0.994	SYNONYMOUS_CODING Cyp4ac1 UPSTREAM Cyp4ac2 INTRON tkv	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	17279197	3R_17279197_SNP [dm3] 3R_21453475_SNP [dm6]	T	C	8.647e^-5	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	8625501	2R_8625501_SNP [dm3] 2R_12737996_SNP [dm6]	A	C	8.665e^-5	0.994	INTRON CG42663
2R	7653085	2R_7653085_SNP [dm3] 2R_11765580_SNP [dm6]	T	C	8.667e^-5	0.994	INTRON ths
3L	7386578	3L_7386578_SNP [dm3] 3L_7393478_SNP [dm6]	C	A	8.705e^-5	0.994	INTRON CG8563
2R	13403231	2R_13403231_SNP [dm3] 2R_17515726_SNP [dm6]	C	A	8.716e^-5	0.994	NON_SYNONYMOUS_CODING CG4853
3R	16195775	3R_16195775_SNP [dm3] 3R_20370053_SNP [dm6]	T	C	8.754e^-5	0.994	INTERGENIC
3R	10172088	3R_10172088_SNP [dm3] 3R_14346366_SNP [dm6]	A	C	8.771e^-5	0.994	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11303667	3R_11303667_SNP [dm3] 3R_15477945_SNP [dm6]	A	T	8.797e^-5	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	17087635	3R_17087635_SNP [dm3] 3R_21261913_SNP [dm6]	G	T	8.841e^-5	0.994	SYNONYMOUS_CODING ETHR INTRON ETHR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17087636	3R_17087636_SNP [dm3] 3R_21261914_SNP [dm6]	C	T	8.841e^-5	0.994	SYNONYMOUS_CODING ETHR INTRON ETHR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25441276	3R_25441276_SNP [dm3] 3R_29615554_SNP [dm6]	G	T	8.841e^-5	0.994	INTRON alph
3R	17259285	3R_17259285_SNP [dm3] 3R_21433563_SNP [dm6]	G	C	8.864e^-5	0.994	SYNONYMOUS_CODING lbl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2R	12617616	2R_12617616_DEL [dm3] 2R_16730111_DEL [dm6]	CCCTCGTCAAGTACGAC...	C	9.197e^-5	0.994	INTRON CG30463	TF binding site BDTNP1_TFBS_dl
2L	4198141	2L_4198141_SNP [dm3] 2L_4198141_SNP [dm6]	T	A	9.197e^-5	0.994	UPSTREAM CG3714 DOWNSTREAM ft INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	18978979	3L_18978979_SNP [dm3] 3L_18985879_SNP [dm6]	A	T	9.604e^-5	0.994	DOWNSTREAM CG11619 & 1 other INTERGENIC
X	7962855	X_7962855_DEL [dm3] X_8068822_DEL [dm6]	AACC	A	9.611e^-5	0.994	INTRON mys	TF binding site mE1_TFBS_cad
3R	16195812	3R_16195812_SNP [dm3] 3R_20370090_SNP [dm6]	G	A	9.861e^-5	0.994	INTERGENIC
2R	2925219	2R_2925219_SNP [dm3] 2R_7037714_SNP [dm6]	C	T	9.984e^-5	0.994	UTR_5_PRIME CG33914 DOWNSTREAM Tsp42Ei
3R	25441184	3R_25441184_SNP [dm3] 3R_29615462_SNP [dm6]	A	T	9.999e^-5	0.994	INTRON alph
2R	14373794	2R_14373794_SNP [dm3] 2R_18486289_SNP [dm6]	T	C	1.006e^-4	0.994	INTRON CG30116
2R	14373819	2R_14373819_SNP [dm3] 2R_18486314_SNP [dm6]	C	A	1.006e^-4	0.994	INTRON CG30116
3R	11870448	3R_11870448_SNP [dm3] 3R_16044726_SNP [dm6]	A	T	1.007e^-4	0.994	UTR_3_PRIME CG10264 DOWNSTREAM CG10407
3R	11872522	3R_11872522_SNP [dm3] 3R_16046800_SNP [dm6]	T	C	1.008e^-4	0.994	SYNONYMOUS_CODING ird5 UPSTREAM CG10407
X	7670148	X_7670148_SNP [dm3] X_7776115_SNP [dm6]	C	T	1.015e^-4	0.994	INTERGENIC
3R	14048386	3R_14048386_SNP [dm3] 3R_18222664_SNP [dm6]	G	A	1.028e^-4	0.994	SYNONYMOUS_CODING mTerf5	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	6298786	3R_6298786_SNP [dm3] 3R_10473064_SNP [dm6]	C	A	1.032e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	11683405	2R_11683405_SNP [dm3] 2R_15795900_SNP [dm6]	C	T	1.033e^-4	0.994	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5266823	2L_5266823_SNP [dm3] 2L_5266823_SNP [dm6]	T	C	1.049e^-4	0.994	NON_SYNONYMOUS_CODING Cyp4ac2 DOWNSTREAM Cyp4ac1 INTRON tkv
2L	1999494	2L_1999494_SNP [dm3] 2L_1999494_SNP [dm6]	C	G	1.060e^-4	0.994	UPSTREAM CR43464 INTRON CG33543
2R	13042382	2R_13042382_SNP [dm3] 2R_17154877_SNP [dm6]	A	C	1.062e^-4	0.994	SYNONYMOUS_CODING CG17290
2L	5966175	2L_5966175_SNP [dm3] 2L_5966175_SNP [dm6]	C	G	1.078e^-4	0.994	NON_SYNONYMOUS_CODING CG13992	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7325501	3L_7325501_SNP [dm3] 3L_7332401_SNP [dm6]	G	A	1.089e^-4	0.994	NON_SYNONYMOUS_CODING mus312 UTR_3_PRIME mus312 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6534172	2L_6534172_SNP [dm3] 2L_6534172_SNP [dm6]	C	T	1.097e^-4	0.994	INTRON eya	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	10630319	3R_10630319_SNP [dm3] 3R_14804597_SNP [dm6]	T	A	1.105e^-4	0.994	UTR_3_PRIME btsz DOWNSTREAM CG14857
3R	5615284	3R_5615284_SNP [dm3] 3R_9789562_SNP [dm6]	G	T	1.108e^-4	0.994	SYNONYMOUS_CODING CG12945 DOWNSTREAM CG8500
3R	2704526	3R_2704526_SNP [dm3] 3R_6878804_SNP [dm6]	T	A	1.130e^-4	0.994	INTRON CR44931	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	651588	X_651588_SNP [dm3] X_757555_SNP [dm6]	C	T	1.130e^-4	0.994	INTRON CG5254
X	651778	X_651778_SNP [dm3] X_757745_SNP [dm6]	C	T	1.130e^-4	0.994	INTRON CG5254
2L	9068972	2L_9068972_SNP [dm3] 2L_9068972_SNP [dm6]	C	T	1.156e^-4	0.994	INTRON CG31708
3R	17262839	3R_17262839_SNP [dm3] 3R_21437117_SNP [dm6]	T	A	1.158e^-4	0.994	UPSTREAM CR44089 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	17677128	X_17677128_SNP [dm3] X_17783095_SNP [dm6]	C	T	1.183e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2979431	2L_2979431_SNP [dm3] 2L_2979431_SNP [dm6]	A	C	1.183e^-4	0.994	UPSTREAM CG9643 DOWNSTREAM CG3165 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3R	17962897	3R_17962897_SNP [dm3] 3R_22137175_SNP [dm6]	A	C	1.184e^-4	0.994	INTRON SKIP
3R	17962908	3R_17962908_SNP [dm3] 3R_22137186_SNP [dm6]	G	T	1.184e^-4	0.994	INTRON SKIP
3R	17962923	3R_17962923_SNP [dm3] 3R_22137201_SNP [dm6]	A	C	1.184e^-4	0.994	INTRON SKIP
3R	17962938	3R_17962938_SNP [dm3] 3R_22137216_SNP [dm6]	A	T	1.184e^-4	0.994	INTRON SKIP
X	2262176	X_2262176_SNP [dm3] X_2368143_SNP [dm6]	C	T	1.193e^-4	0.994	UTR_3_PRIME PsGEF
3L	1378772	3L_1378772_SNP [dm3] 3L_1378772_SNP [dm6]	T	A	1.199e^-4	0.994	INTRON Ptp61F & 1 other
2L	8611811	2L_8611811_SNP [dm3] 2L_8611811_SNP [dm6]	C	A	1.202e^-4	0.994	INTRON Sema-1a
3R	15951090	3R_15951090_SNP [dm3] 3R_20125368_SNP [dm6]	C	T	1.214e^-4	0.994	INTERGENIC
3R	15954628	3R_15954628_SNP [dm3] 3R_20128906_SNP [dm6]	C	A	1.214e^-4	0.994	INTERGENIC
3R	14808912	3R_14808912_SNP [dm3] 3R_18983190_SNP [dm6]	A	G	1.218e^-4	0.994	SYNONYMOUS_CODING snRNP-U1-C UPSTREAM gukh DOWNSTREAM dnk	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	14808939	3R_14808939_SNP [dm3] 3R_18983217_SNP [dm6]	G	A	1.218e^-4	0.994	SYNONYMOUS_CODING snRNP-U1-C UPSTREAM gukh DOWNSTREAM dnk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	21989816	3R_21989816_SNP [dm3] 3R_26164094_SNP [dm6]	G	A	1.218e^-4	0.994	INTERGENIC
3R	21989824	3R_21989824_SNP [dm3] 3R_26164102_SNP [dm6]	A	C	1.218e^-4	0.994	INTERGENIC
3R	21989847	3R_21989847_SNP [dm3] 3R_26164125_SNP [dm6]	A	G	1.218e^-4	0.994	INTERGENIC
3R	21989852	3R_21989852_DEL [dm3] 3R_26164130_DEL [dm6]	AGGCAATAGGTAA...	A	1.218e^-4	0.994	INTERGENIC
3L	18802601	3L_18802601_SNP [dm3] 3L_18809501_SNP [dm6]	A	T	1.224e^-4	0.994	INTRON CG14073	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	18802619	3L_18802619_SNP [dm3] 3L_18809519_SNP [dm6]	A	C	1.224e^-4	0.994	INTRON CG14073	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	15577758	2R_15577758_SNP [dm3] 2R_19690253_SNP [dm6]	A	G	1.226e^-4	0.994	UPSTREAM CG15126 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	21998920	3R_21998920_SNP [dm3] 3R_26173198_SNP [dm6]	G	T	1.236e^-4	0.994	INTRON CG31323
3R	12244628	3R_12244628_SNP [dm3] 3R_16418906_SNP [dm6]	T	C	1.244e^-4	0.994	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	16151326	X_16151326_SNP [dm3] X_16257293_SNP [dm6]	A	T	1.249e^-4	0.994	INTERGENIC
X	17969598	X_17969598_SNP [dm3] X_18075565_SNP [dm6]	C	T	1.249e^-4	0.994	SYNONYMOUS_CODING Dhc16F
X	17969648	X_17969648_SNP [dm3] X_18075615_SNP [dm6]	C	T	1.249e^-4	0.994	SYNONYMOUS_CODING Dhc16F
2R	16861818	2R_16861818_SNP [dm3] 2R_20974313_SNP [dm6]	T	A	1.263e^-4	0.994	UPSTREAM CG15649 INTERGENIC
X	17665523	X_17665523_SNP [dm3] X_17771490_SNP [dm6]	A	G	1.276e^-4	0.994	INTRON unc-4
2L	9635798	2L_9635798_SNP [dm3] 2L_9635798_SNP [dm6]	G	T	1.277e^-4	0.994	INTRON Apoltp
X	11830788	X_11830788_SNP [dm3] X_11936755_SNP [dm6]	C	T	1.280e^-4	0.994	SYNONYMOUS_CODING cac	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11679916	X_11679916_SNP [dm3] X_11785883_SNP [dm6]	G	T	1.283e^-4	0.994	INTERGENIC
3R	21568900	3R_21568900_SNP [dm3] 3R_25743178_SNP [dm6]	T	C	1.293e^-4	0.994	INTRON LpR1
2R	2969092	2R_2969092_SNP [dm3] 2R_7081587_SNP [dm6]	T	C	1.304e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8978936	3L_8978936_SNP [dm3] 3L_8985836_SNP [dm6]	C	A	1.309e^-4	0.994	UPSTREAM Galk & 1 other INTRON Galk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Ubx
X	17665525	X_17665525_SNP [dm3] X_17771492_SNP [dm6]	G	T	1.333e^-4	0.994	INTRON unc-4
2R	7618987	2R_7618987_SNP [dm3] 2R_11731482_SNP [dm6]	T	C	1.343e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16529508	X_16529508_SNP [dm3] X_16635475_SNP [dm6]	A	G	1.369e^-4	0.994	INTRON Rok
3R	20103360	3R_20103360_SNP [dm3] 3R_24277638_SNP [dm6]	C	A	1.374e^-4	0.994	NON_SYNONYMOUS_CODING Orct	TF binding site mE1_TFBS_chinmo
X	18846673	X_18846673_SNP [dm3] X_18952640_SNP [dm6]	T	C	1.400e^-4	0.994	INTRON CG43759
3R	18808273	3R_18808273_DEL [dm3] 3R_22982551_DEL [dm6]	ATGGGAA	A	1.412e^-4	0.994	INTRON Nha2
2L	1316715	2L_1316715_SNP [dm3] 2L_1316715_SNP [dm6]	T	C	1.415e^-4	0.994	INTERGENIC
3L	15984923	3L_15984923_SNP [dm3] 3L_15991823_SNP [dm6]	A	C	1.417e^-4	0.994	UTR_3_PRIME Hip14 DOWNSTREAM Hip14 & 1 other
3L	18134436	3L_18134436_SNP [dm3] 3L_18141336_SNP [dm6]	G	T	1.421e^-4	0.994	INTRON gk
2R	19047586	2R_19047586_SNP [dm3] 2R_23160063_SNP [dm6]	C	T	1.429e^-4	0.994	SYNONYMOUS_CODING CG9899
2L	2979350	2L_2979350_SNP [dm3] 2L_2979350_SNP [dm6]	A	G	1.430e^-4	0.994	UPSTREAM CG9643 DOWNSTREAM CG3165 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14511670	2R_14511670_SNP [dm3] 2R_18624165_SNP [dm6]	A	C	1.432e^-4	0.994	INTRON Atg7
2L	2021870	2L_2021870_SNP [dm3] 2L_2021870_SNP [dm6]	C	T	1.433e^-4	0.994	INTRON CG4238
3R	11870713	3R_11870713_SNP [dm3] 3R_16044991_SNP [dm6]	A	G	1.464e^-4	0.994	SYNONYMOUS_CODING CG10407 DOWNSTREAM CG10264
3R	11870719	3R_11870719_SNP [dm3] 3R_16044997_SNP [dm6]	G	A	1.464e^-4	0.994	SYNONYMOUS_CODING CG10407 DOWNSTREAM CG10264
X	11679914	X_11679914_SNP [dm3] X_11785881_SNP [dm6]	G	A	1.482e^-4	0.994	INTERGENIC
2R	17946316	2R_17946316_SNP [dm3] 2R_22058811_SNP [dm6]	A	T	1.487e^-4	0.994	DOWNSTREAM CG13501 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	11871676	3R_11871676_SNP [dm3] 3R_16045954_SNP [dm6]	T	C	1.497e^-4	0.994	UTR_5_PRIME CG10407 DOWNSTREAM ird5
3R	11871714	3R_11871714_SNP [dm3] 3R_16045992_SNP [dm6]	T	C	1.497e^-4	0.994	UTR_5_PRIME CG10407 UPSTREAM CG10407 DOWNSTREAM ird5
2L	13972288	2L_13972288_SNP [dm3] 2L_13972288_SNP [dm6]	T	C	1.500e^-4	0.994	SYNONYMOUS_CODING He DOWNSTREAM NimB5 & 1 other
3L	8741873	3L_8741873_SNP [dm3] 3L_8748773_SNP [dm6]	T	G	1.502e^-4	0.994	DOWNSTREAM CG13306 INTERGENIC	TF binding site mE1_TFBS_bab1
2L	10473624	2L_10473624_SNP [dm3] 2L_10473624_SNP [dm6]	A	C	1.548e^-4	0.994	INTRON RluA-1
3R	2501968	3R_2501968_SNP [dm3] 3R_6676246_SNP [dm6]	G	T	1.560e^-4	0.994	INTRON lab	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens
2R	18443659	2R_18443659_SNP [dm3] 2R_22556154_SNP [dm6]	G	C	1.560e^-4	0.994	SYNONYMOUS_CODING px	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19448895	2R_19448895_SNP [dm3] 2R_23561372_SNP [dm6]	A	T	1.566e^-4	0.994	INTRON Pi3K59F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	6787882	2L_6787882_SNP [dm3] 2L_6787882_SNP [dm6]	A	G	1.576e^-4	0.994	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	2310576	3L_2310576_SNP [dm3] 3L_2310576_SNP [dm6]	C	T	1.590e^-4	0.994	INTERGENIC
3R	5611264	3R_5611264_SNP [dm3] 3R_9785542_SNP [dm6]	G	C	1.605e^-4	0.994	INTRON CG8500
3R	5615334	3R_5615334_SNP [dm3] 3R_9789612_SNP [dm6]	G	A	1.605e^-4	0.994	NON_SYNONYMOUS_CODING CG12945 DOWNSTREAM CG8500
3R	15971014	3R_15971014_SNP [dm3] 3R_20145292_SNP [dm6]	A	G	1.612e^-4	0.994	INTERGENIC
2R	6862445	2R_6862445_SNP [dm3] 2R_10974940_SNP [dm6]	T	C	1.621e^-4	0.994	INTERGENIC
3R	17315766	3R_17315766_SNP [dm3] 3R_21490044_SNP [dm6]	G	A	1.624e^-4	0.994	INTERGENIC
3R	11871890	3R_11871890_SNP [dm3] 3R_16046168_SNP [dm6]	C	T	1.624e^-4	0.994	UPSTREAM CG10407 DOWNSTREAM ird5 INTERGENIC
3R	11871891	3R_11871891_SNP [dm3] 3R_16046169_SNP [dm6]	A	G	1.624e^-4	0.994	UPSTREAM CG10407 DOWNSTREAM ird5 INTERGENIC
3R	11872003	3R_11872003_DEL [dm3] 3R_16046281_DEL [dm6]	CGATACCGCGAAC...	C	1.624e^-4	0.994	UPSTREAM CG10407 DOWNSTREAM ird5 INTERGENIC
3R	11872032	3R_11872032_SNP [dm3] 3R_16046310_SNP [dm6]	A	C	1.624e^-4	0.994	UPSTREAM CG10407 DOWNSTREAM ird5 INTERGENIC
3R	11872035	3R_11872035_DEL [dm3] 3R_16046313_DEL [dm6]	CACT	G	1.624e^-4	0.994	UPSTREAM CG10407 DOWNSTREAM ird5 INTERGENIC
2L	6787852	2L_6787852_INS [dm3] 2L_6787852_INS [dm6]	C	CC	1.643e^-4	0.994	UPSTREAM nrv1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	2139791	3R_2139791_SNP [dm3] 3R_6314069_SNP [dm6]	C	T	1.643e^-4	0.994	INTRON Osi17
2L	4197284	2L_4197284_SNP [dm3] 2L_4197284_SNP [dm6]	T	C	1.646e^-4	0.994	UTR_5_PRIME CG3714 INTRON CG3714	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
3R	13618832	3R_13618832_SNP [dm3] 3R_17793110_SNP [dm6]	G	A	1.659e^-4	0.994	INTRON CG43102
2R	12115556	2R_12115556_SNP [dm3] 2R_16228051_SNP [dm6]	G	A	1.672e^-4	0.994	SYNONYMOUS_CODING Tsf3 INTRON CG15706	TF binding site mE1_TFBS_chinmo
3R	26092609	3R_26092609_SNP [dm3] 3R_30266887_SNP [dm6]	A	C	1.692e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	8412941	2L_8412941_SNP [dm3] 2L_8412941_SNP [dm6]	C	T	1.705e^-4	0.994	UTR_3_PRIME CG13398
2L	18908836	2L_18908836_SNP [dm3] 2L_18908836_SNP [dm6]	T	G	1.715e^-4	0.994	INTERGENIC
3R	13551153	3R_13551153_SNP [dm3] 3R_17725431_SNP [dm6]	C	T	1.727e^-4	0.994	UPSTREAM Lgr1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_sna
3R	17962944	3R_17962944_SNP [dm3] 3R_22137222_SNP [dm6]	T	A	1.762e^-4	0.994	INTRON SKIP
X	7962837	X_7962837_SNP [dm3] X_8068804_SNP [dm6]	T	C	1.765e^-4	0.994	INTRON mys	TF binding site mE1_TFBS_cad
2L	9068998	2L_9068998_SNP [dm3] 2L_9068998_SNP [dm6]	A	G	1.765e^-4	0.994	INTRON CG31708
2L	9069022	2L_9069022_SNP [dm3] 2L_9069022_SNP [dm6]	T	A	1.765e^-4	0.994	INTRON CG31708
3L	8978969	3L_8978969_SNP [dm3] 3L_8985869_SNP [dm6]	C	T	1.794e^-4	0.994	UPSTREAM Galk & 1 other INTRON Galk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Ubx
3L	11852655	3L_11852655_SNP [dm3] 3L_11859555_SNP [dm6]	A	G	1.795e^-4	0.994	INTRON CG44837
3R	11242567	3R_11242567_SNP [dm3] 3R_15416845_SNP [dm6]	T	A	1.802e^-4	0.994	UTR_3_PRIME Atx2 DOWNSTREAM Atx2 & 3 others
3R	11242572	3R_11242572_SNP [dm3] 3R_15416850_SNP [dm6]	G	A	1.802e^-4	0.994	UTR_3_PRIME Atx2 DOWNSTREAM Atx2 & 3 others
X	15531943	X_15531943_INS [dm3] X_15637910_INS [dm6]	C	CTATATGCTATAC...	1.808e^-4	0.994	DOWNSTREAM CR44423 INTERGENIC
2R	14386210	2R_14386210_SNP [dm3] 2R_18498705_SNP [dm6]	A	C	1.808e^-4	0.994	UPSTREAM CG30116 INTERGENIC
X	4124400	X_4124400_SNP [dm3] X_4230367_SNP [dm6]	A	G	1.831e^-4	0.994	INTERGENIC
X	13749990	X_13749990_SNP [dm3] X_13855957_SNP [dm6]	T	C	1.834e^-4	0.994	NON_SYNONYMOUS_CODING mamo	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14372983	2R_14372983_SNP [dm3] 2R_18485478_SNP [dm6]	G	T	1.837e^-4	0.994	INTRON CG30116
2R	14372988	2R_14372988_SNP [dm3] 2R_18485483_SNP [dm6]	A	C	1.837e^-4	0.994	INTRON CG30116
2R	14372992	2R_14372992_DEL [dm3] 2R_18485487_DEL [dm6]	TA	T	1.837e^-4	0.994	INTRON CG30116
3L	15942334	3L_15942334_SNP [dm3] 3L_15949234_SNP [dm6]	A	G	1.870e^-4	0.994	INTRON Pka-C3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	13421269	2L_13421269_SNP [dm3] 2L_13421269_SNP [dm6]	G	A	1.871e^-4	0.994	DOWNSTREAM CG43850 INTRON CG42784
X	18846668	X_18846668_SNP [dm3] X_18952635_SNP [dm6]	T	A	1.871e^-4	0.994	INTRON CG43759
2L	18776018	2L_18776018_SNP [dm3] 2L_18776018_SNP [dm6]	T	A	1.879e^-4	0.994	INTRON ham	TF binding site BDTNP1_TFBS_twi
2R	14365004	2R_14365004_SNP [dm3] 2R_18477499_SNP [dm6]	A	G	1.879e^-4	0.994	INTRON CG30116
2R	6754158	2R_6754158_SNP [dm3] 2R_10866653_SNP [dm6]	A	G	1.897e^-4	0.994	INTRON CG30015
X	17665693	X_17665693_SNP [dm3] X_17771660_SNP [dm6]	A	G	1.908e^-4	0.994	INTRON unc-4
X	17665709	X_17665709_SNP [dm3] X_17771676_SNP [dm6]	T	C	1.908e^-4	0.994	INTRON unc-4
X	20250342	X_20250342_SNP [dm3] X_20379315_SNP [dm6]	G	A	1.948e^-4	0.994	INTERGENIC
3R	17087295	3R_17087295_SNP [dm3] 3R_21261573_SNP [dm6]	C	T	1.979e^-4	0.994	INTRON ETHR
X	16529504	X_16529504_SNP [dm3] X_16635471_SNP [dm6]	G	A	1.996e^-4	0.994	INTRON Rok
2R	12476866	2R_12476866_SNP [dm3] 2R_16589361_SNP [dm6]	T	C	1.998e^-4	0.994	UPSTREAM CG8311 DOWNSTREAM CG8306 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	19963001	3L_19963001_SNP [dm3] 3L_19969901_SNP [dm6]	C	G	2.008e^-4	0.994	INTRON Ac76E
X	6533655	X_6533655_SNP [dm3] X_6639622_SNP [dm6]	G	C	2.025e^-4	0.994	INTRON pigs
2R	13760427	2R_13760427_SNP [dm3] 2R_17872922_SNP [dm6]	A	T	2.033e^-4	0.994	UPSTREAM Mapmodulin INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5626897	2L_5626897_SNP [dm3] 2L_5626897_SNP [dm6]	A	C	2.036e^-4	0.994	UTR_3_PRIME CG31646	TF binding site BDTNP1_TFBS_twi
2R	2372972	2R_2372972_SNP [dm3] 2R_6485467_SNP [dm6]	G	T	2.042e^-4	0.994	INTERGENIC	transposable element FlyBase
X	2753652	X_2753652_SNP [dm3] X_2859619_SNP [dm6]	G	A	2.062e^-4	0.994	INTRON kirre
2R	2925476	2R_2925476_SNP [dm3] 2R_7037971_SNP [dm6]	C	T	2.117e^-4	0.994	UTR_5_PRIME CG33914 UPSTREAM CG33914
2L	15755322	2L_15755322_SNP [dm3] 2L_15755322_SNP [dm6]	T	C	2.154e^-4	0.994	SYNONYMOUS_CODING l_2_35Df DOWNSTREAM Gli	TF binding site mE1_TFBS_cad
2R	12475617	2R_12475617_SNP [dm3] 2R_16588112_SNP [dm6]	C	T	2.170e^-4	0.994	SYNONYMOUS_CODING CG8311	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	5409261	X_5409261_SNP [dm3] X_5515228_SNP [dm6]	T	G	2.179e^-4	0.994	INTERGENIC
2L	13496197	2L_13496197_SNP [dm3] 2L_13496197_SNP [dm6]	A	C	2.180e^-4	0.994	START_GAINED CG42784 UTR_5_PRIME CG42784 INTRON CG42784
2R	18360309	2R_18360309_INS [dm3] 2R_22472804_INS [dm6]	A	AA	2.183e^-4	0.994	UTR_3_PRIME CG10384 DOWNSTREAM CG45062
3L	8979047	3L_8979047_SNP [dm3] 3L_8985947_SNP [dm6]	C	T	2.191e^-4	0.994	UPSTREAM Galk & 1 other INTRON Galk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Ubx
3L	8979113	3L_8979113_SNP [dm3] 3L_8986013_SNP [dm6]	T	A	2.191e^-4	0.994	UTR_5_PRIME Galk UPSTREAM Galk & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	1345710	2R_1345710_SNP [dm3] 2R_5458205_SNP [dm6]	A	T	2.211e^-4	0.994	INTERGENIC	transposable element FlyBase
2L	2024716	2L_2024716_SNP [dm3] 2L_2024716_SNP [dm6]	A	T	2.221e^-4	0.994	INTRON CG4238
X	22047445	X_22047445_SNP [dm3] X_22645609_SNP [dm6]	C	T	2.224e^-4	0.994	INTERGENIC
2L	5230494	2L_5230494_SNP [dm3] 2L_5230494_SNP [dm6]	C	A	2.229e^-4	0.994	INTRON tkv
2L	5966176	2L_5966176_SNP [dm3] 2L_5966176_SNP [dm6]	T	A	2.236e^-4	0.994	SYNONYMOUS_CODING CG13992	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13162802	3L_13162802_SNP [dm3] 3L_13169702_SNP [dm6]	C	T	2.238e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	13160635	3L_13160635_DEL [dm3] 3L_13167535_DEL [dm6]	AATA	A	2.246e^-4	0.994	INTERGENIC
2R	6792945	2R_6792945_SNP [dm3] 2R_10905440_SNP [dm6]	T	G	2.246e^-4	0.994	SYNONYMOUS_CODING CG12943 UTR_3_PRIME CG12943
2R	9646540	2R_9646540_SNP [dm3] 2R_13759035_SNP [dm6]	A	T	2.250e^-4	0.994	DOWNSTREAM CG6280 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	9646544	2R_9646544_SNP [dm3] 2R_13759039_SNP [dm6]	T	G	2.250e^-4	0.994	DOWNSTREAM CG6280 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	15970928	3R_15970928_SNP [dm3] 3R_20145206_SNP [dm6]	G	A	2.251e^-4	0.994	INTERGENIC
3R	21568949	3R_21568949_SNP [dm3] 3R_25743227_SNP [dm6]	T	C	2.279e^-4	0.994	INTRON LpR1
2L	4022801	2L_4022801_SNP [dm3] 2L_4022801_SNP [dm6]	A	G	2.280e^-4	0.994	INTERGENIC
2L	8398189	2L_8398189_SNP [dm3] 2L_8398189_SNP [dm6]	A	G	2.282e^-4	0.994	UPSTREAM CG13386 DOWNSTREAM CG13385 INTERGENIC
3R	2495136	3R_2495136_SNP [dm3] 3R_6669414_SNP [dm6]	G	A	2.285e^-4	0.994	INTRON lab	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	9445716	2L_9445716_SNP [dm3] 2L_9445716_SNP [dm6]	C	G	2.285e^-4	0.994	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
3R	2703903	3R_2703903_SNP [dm3] 3R_6878181_SNP [dm6]	A	G	2.289e^-4	0.994	INTRON CR44931	regulatory region FlyBase REDfly_CRMs
2L	6788149	2L_6788149_SNP [dm3] 2L_6788149_SNP [dm6]	A	T	2.291e^-4	0.994	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	8978827	3L_8978827_SNP [dm3] 3L_8985727_SNP [dm6]	T	C	2.296e^-4	0.994	START_GAINED Galk UTR_5_PRIME Galk UPSTREAM Galk & 1 other INTRON Galk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Ubx
2L	6863584	2L_6863584_SNP [dm3] 2L_6863584_SNP [dm6]	A	T	2.301e^-4	0.994	INTRON Nha1
3L	19038348	3L_19038348_SNP [dm3] 3L_19045248_SNP [dm6]	T	A	2.304e^-4	0.994	START_GAINED nkd UTR_5_PRIME nkd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
2L	13114815	2L_13114815_SNP [dm3] 2L_13114815_SNP [dm6]	G	T	2.304e^-4	0.994	INTERGENIC
2R	16579758	2R_16579758_SNP [dm3] 2R_20692253_SNP [dm6]	C	G	2.308e^-4	0.994	UPSTREAM CG13438 EXON CR44659
2R	14387729	2R_14387729_SNP [dm3] 2R_18500224_SNP [dm6]	G	A	2.323e^-4	0.994	INTERGENIC
2R	14387752	2R_14387752_SNP [dm3] 2R_18500247_SNP [dm6]	A	G	2.323e^-4	0.994	INTERGENIC
2R	14387753	2R_14387753_SNP [dm3] 2R_18500248_SNP [dm6]	G	C	2.323e^-4	0.994	INTERGENIC
2R	14387760	2R_14387760_SNP [dm3] 2R_18500255_SNP [dm6]	T	C	2.323e^-4	0.994	INTERGENIC
2R	14387780	2R_14387780_SNP [dm3] 2R_18500275_SNP [dm6]	G	A	2.323e^-4	0.994	INTERGENIC
2R	18570111	2R_18570111_SNP [dm3] 2R_22682606_SNP [dm6]	A	G	2.328e^-4	0.994	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4009771	2L_4009771_SNP [dm3] 2L_4009771_SNP [dm6]	G	T	2.333e^-4	0.994	DOWNSTREAM CG43774 INTERGENIC
3R	10749642	3R_10749642_SNP [dm3] 3R_14923920_SNP [dm6]	G	A	2.340e^-4	0.994	UPSTREAM CR45598 DOWNSTREAM Sdr INTERGENIC
2L	12126480	2L_12126480_SNP [dm3] 2L_12126480_SNP [dm6]	G	A	2.358e^-4	0.994	SYNONYMOUS_CODING CG17211
2L	13964484	2L_13964484_SNP [dm3] 2L_13964484_SNP [dm6]	A	T	2.373e^-4	0.994	DOWNSTREAM NimB2 INTRON NimB1	TF binding site mE1_TFBS_chinmo
X	19800846	X_19800846_DEL [dm3] X_19906813_DEL [dm6]	TA	T	2.382e^-4	0.994	UTR_3_PRIME Hers DOWNSTREAM Hers	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	27284955	3R_27284955_SNP [dm3] 3R_31459233_SNP [dm6]	G	A	2.383e^-4	0.994	SYNONYMOUS_CODING lox DOWNSTREAM CG11334	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	5598461	3R_5598461_SNP [dm3] 3R_9772739_SNP [dm6]	T	A	2.417e^-4	0.994	SYNONYMOUS_CODING Whamy	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3945083	3L_3945083_SNP [dm3] 3L_3945083_SNP [dm6]	A	G	2.417e^-4	0.994	SYNONYMOUS_CODING CG14982	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_HSA
3L	8945398	3L_8945398_SNP [dm3] 3L_8952298_SNP [dm6]	T	G	2.434e^-4	0.994	INTRON orb2 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	2878199	2R_2878199_SNP [dm3] 2R_6990694_SNP [dm6]	C	A	2.449e^-4	0.994	INTERGENIC	transposable element FlyBase
3R	11869671	3R_11869671_SNP [dm3] 3R_16043949_SNP [dm6]	A	T	2.456e^-4	0.994	DOWNSTREAM CG10407 INTRON CG10264
3R	9822558	3R_9822558_SNP [dm3] 3R_13996836_SNP [dm6]	G	T	2.473e^-4	0.994	INTRON rdx
X	657373	X_657373_SNP [dm3] X_763340_SNP [dm6]	G	C	2.476e^-4	0.994	UPSTREAM snoRNA:Psi18S-531 DOWNSTREAM CR44965 & 1 other INTRON CR42491 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	25402904	3R_25402904_SNP [dm3] 3R_29577182_SNP [dm6]	C	T	2.484e^-4	0.994	INTERGENIC
3L	9427364	3L_9427364_SNP [dm3] 3L_9434264_SNP [dm6]	G	C	2.488e^-4	0.994	UTR_3_PRIME CG42526 INTRON MTF-1
2R	14387464	2R_14387464_SNP [dm3] 2R_18499959_SNP [dm6]	T	G	2.507e^-4	0.994	INTERGENIC
2L	6788070	2L_6788070_SNP [dm3] 2L_6788070_SNP [dm6]	C	T	2.508e^-4	0.994	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	1782326	2R_1782326_INS [dm3] 2R_5894821_INS [dm6]	T	TCT	2.511e^-4	0.994	INTRON CG43366
X	7971585	X_7971585_SNP [dm3] X_8077552_SNP [dm6]	G	A	2.545e^-4	0.994	NON_SYNONYMOUS_CODING CG1571 DOWNSTREAM CG2254	TF binding site mE1_TFBS_cad
2L	6786603	2L_6786603_SNP [dm3] 2L_6786603_SNP [dm6]	G	A	2.555e^-4	0.994	UTR_5_PRIME nrv1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	6787025	2L_6787025_SNP [dm3] 2L_6787025_SNP [dm6]	A	T	2.555e^-4	0.994	UPSTREAM nrv1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	6787231	2L_6787231_SNP [dm3] 2L_6787231_SNP [dm6]	G	A	2.555e^-4	0.994	UPSTREAM nrv1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	14074204	2L_14074204_SNP [dm3] 2L_14074204_SNP [dm6]	C	A	2.572e^-4	0.994	INTRON nAChRalpha5
2L	13114489	2L_13114489_SNP [dm3] 2L_13114489_SNP [dm6]	C	T	2.613e^-4	0.994	INTERGENIC
2L	16538277	2L_16538277_SNP [dm3] 2L_16538277_SNP [dm6]	T	A	2.634e^-4	0.994	INTERGENIC
2R	13042287	2R_13042287_SNP [dm3] 2R_17154782_SNP [dm6]	T	G	2.640e^-4	0.994	INTRON CG17290
2L	5266723	2L_5266723_SNP [dm3] 2L_5266723_SNP [dm6]	A	C	2.641e^-4	0.994	SYNONYMOUS_CODING Cyp4ac2 DOWNSTREAM Cyp4ac1 INTRON tkv
3R	6518848	3R_6518848_SNP [dm3] 3R_10693126_SNP [dm6]	A	G	2.654e^-4	0.994	SPLICE_SITE_REGION Skeletor INTRON Skeletor
3R	17087668	3R_17087668_SNP [dm3] 3R_21261946_SNP [dm6]	C	T	2.684e^-4	0.994	SYNONYMOUS_CODING ETHR INTRON ETHR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	11871963	3R_11871963_SNP [dm3] 3R_16046241_SNP [dm6]	C	G	2.688e^-4	0.994	UPSTREAM CG10407 DOWNSTREAM ird5 INTERGENIC
3L	11952552	3L_11952552_SNP [dm3] 3L_11959452_SNP [dm6]	T	C	2.714e^-4	0.994	SYNONYMOUS_CODING prc DOWNSTREAM CG43294
3R	5596156	3R_5596156_DEL [dm3] 3R_9770434_DEL [dm6]	AT	A	2.714e^-4	0.994	DOWNSTREAM CG9471 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8978821	3L_8978821_SNP [dm3] 3L_8985721_SNP [dm6]	G	T	2.716e^-4	0.994	UTR_5_PRIME Galk UPSTREAM Galk & 1 other INTRON Galk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Ubx
3L	8978835	3L_8978835_SNP [dm3] 3L_8985735_SNP [dm6]	G	C	2.716e^-4	0.994	UTR_5_PRIME Galk UPSTREAM Galk & 1 other INTRON Galk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Ubx
3L	8978848	3L_8978848_SNP [dm3] 3L_8985748_SNP [dm6]	G	A	2.716e^-4	0.994	UTR_5_PRIME Galk UPSTREAM Galk & 1 other INTRON Galk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Ubx
2L	11941024	2L_11941024_SNP [dm3] 2L_11941024_SNP [dm6]	C	T	2.733e^-4	0.994	INTERGENIC
3R	11871726	3R_11871726_SNP [dm3] 3R_16046004_SNP [dm6]	A	C	2.737e^-4	0.994	UTR_5_PRIME CG10407 UPSTREAM CG10407 DOWNSTREAM ird5
2L	7662142	2L_7662142_SNP [dm3] 2L_7662142_SNP [dm6]	C	T	2.739e^-4	0.994	INTRON Slob
2L	6855490	2L_6855490_SNP [dm3] 2L_6855490_SNP [dm6]	T	C	2.740e^-4	0.994	INTRON l_2_k09022	TF binding site mE1_TFBS_cad
2L	6787293	2L_6787293_SNP [dm3] 2L_6787293_SNP [dm6]	T	G	2.746e^-4	0.994	UPSTREAM nrv1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	11870226	3R_11870226_SNP [dm3] 3R_16044504_SNP [dm6]	T	G	2.781e^-4	0.994	SYNONYMOUS_CODING CG10264 DOWNSTREAM CG10407
2L	4629433	2L_4629433_SNP [dm3] 2L_4629433_SNP [dm6]	C	T	2.791e^-4	0.994	INTERGENIC
2L	9269473	2L_9269473_SNP [dm3] 2L_9269473_SNP [dm6]	T	C	2.798e^-4	0.994	INTRON Ggamma30A
2L	13496295	2L_13496295_SNP [dm3] 2L_13496295_SNP [dm6]	A	G	2.805e^-4	0.994	UTR_5_PRIME CG42784 INTRON CG42784
2L	14251535	2L_14251535_SNP [dm3] 2L_14251535_SNP [dm6]	C	G	2.823e^-4	0.994	INTERGENIC
2L	14251537	2L_14251537_SNP [dm3] 2L_14251537_SNP [dm6]	A	G	2.823e^-4	0.994	INTERGENIC
3R	19883660	3R_19883660_DEL [dm3] 3R_24057938_DEL [dm6]	CTTGC	C	2.869e^-4	0.994	UPSTREAM SMC1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_ttk
2L	6537212	2L_6537212_DEL [dm3] 2L_6537212_DEL [dm6]	CTCTCC	C	2.873e^-4	0.994	INTRON eya	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	6537237	2L_6537237_SNP [dm3] 2L_6537237_SNP [dm6]	T	A	2.873e^-4	0.994	INTRON eya	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	12189414	2R_12189414_SNP [dm3] 2R_16301909_SNP [dm6]	C	T	2.878e^-4	0.994	EXON CR45232	TF binding site mE1_TFBS_chinmo
3R	14411721	3R_14411721_SNP [dm3] 3R_18585999_SNP [dm6]	T	C	2.879e^-4	0.994	UTR_5_PRIME fray INTRON fray & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn mE1_TFBS_Trl
3R	19882854	3R_19882854_DEL [dm3] 3R_24057132_DEL [dm6]	TGAACTTGGGTGCGT...	T	2.883e^-4	0.994	UTR_5_PRIME Hsp68	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_ttk
2L	2081978	2L_2081978_SNP [dm3] 2L_2081978_SNP [dm6]	C	T	2.892e^-4	0.994	UPSTREAM CR44808 DOWNSTREAM CG12674 INTRON dpr3	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	4199426	2L_4199426_SNP [dm3] 2L_4199426_SNP [dm6]	T	G	2.893e^-4	0.994	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	3222027	2L_3222027_SNP [dm3] 2L_3222027_SNP [dm6]	A	G	2.901e^-4	0.994	INTERGENIC
X	6202610	X_6202610_SNP [dm3] X_6308577_SNP [dm6]	T	G	2.903e^-4	0.994	UPSTREAM CG15894 INTERGENIC
2R	18569724	2R_18569724_SNP [dm3] 2R_22682219_SNP [dm6]	A	G	2.921e^-4	0.994	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	8742012	3L_8742012_DEL [dm3] 3L_8748912_DEL [dm6]	TG	T	2.927e^-4	0.994	DOWNSTREAM CG13306 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	8742019	3L_8742019_SNP [dm3] 3L_8748919_SNP [dm6]	T	A	2.927e^-4	0.994	DOWNSTREAM CG13306 INTERGENIC	TF binding site mE1_TFBS_bab1
X	20249975	X_20249975_SNP [dm3] X_20378948_SNP [dm6]	G	A	2.968e^-4	0.994	INTERGENIC
X	20249979	X_20249979_SNP [dm3] X_20378952_SNP [dm6]	A	G	2.968e^-4	0.994	INTERGENIC
X	20249993	X_20249993_SNP [dm3] X_20378966_SNP [dm6]	G	A	2.968e^-4	0.994	INTERGENIC
3R	5591356	3R_5591356_SNP [dm3] 3R_9765634_SNP [dm6]	G	T	2.974e^-4	0.994	NON_SYNONYMOUS_CODING CG8478 DOWNSTREAM MED6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	5595739	3R_5595739_SNP [dm3] 3R_9770017_SNP [dm6]	G	A	2.974e^-4	0.994	UTR_3_PRIME CG8481 DOWNSTREAM CG9471	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
2L	13481204	2L_13481204_SNP [dm3] 2L_13481204_SNP [dm6]	G	C	2.979e^-4	0.994	INTRON CG42784
X	13795929	X_13795929_SNP [dm3] X_13901896_SNP [dm6]	T	C	2.979e^-4	0.994	INTRON mamo
2L	10476227	2L_10476227_SNP [dm3] 2L_10476227_SNP [dm6]	A	G	2.983e^-4	0.994	UPSTREAM RluA-2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13144158	2L_13144158_SNP [dm3] 2L_13144158_SNP [dm6]	G	A	2.984e^-4	0.994	UPSTREAM CG16978 INTERGENIC
2L	9070494	2L_9070494_DEL [dm3] 2L_9070494_DEL [dm6]	GA	G	2.995e^-4	0.994	UPSTREAM CR44483 INTRON CG31708
3L	13895657	3L_13895657_SNP [dm3] 3L_13902557_SNP [dm6]	C	G	2.996e^-4	0.994	UTR_5_PRIME dysc
2R	8625668	2R_8625668_SNP [dm3] 2R_12738163_SNP [dm6]	C	T	3.000e^-4	0.994	INTRON CG42663
3L	11998262	3L_11998262_SNP [dm3] 3L_12005162_SNP [dm6]	A	T	3.001e^-4	0.994	INTRON CG6928
2L	19145934	2L_19145934_DEL [dm3] 2L_19145934_DEL [dm6]	TT	T	3.002e^-4	0.994	INTRON brat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20900154	X_20900154_DEL [dm3] X_21029127_DEL [dm6]	GCCAGATGTC	G	3.003e^-4	0.994	UTR_3_PRIME CG1529 UPSTREAM CG1532 DOWNSTREAM CG1529
2L	6787233	2L_6787233_SNP [dm3] 2L_6787233_SNP [dm6]	C	T	3.013e^-4	0.994	UPSTREAM nrv1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	16358534	2R_16358534_INS [dm3] 2R_20471029_INS [dm6]	A	AGA	3.029e^-4	0.994	DOWNSTREAM CG12484 INTRON CG12484
3R	17208946	3R_17208946_INS [dm3] 3R_21383224_INS [dm6]	T	TCTTATATTTT...	3.029e^-4	0.994	INTERGENIC	regulatory region REDfly_CRMs
3R	17208956	3R_17208956_SNP [dm3] 3R_21383234_SNP [dm6]	T	G	3.029e^-4	0.994	INTERGENIC	regulatory region REDfly_CRMs
3R	17208968	3R_17208968_SNP [dm3] 3R_21383246_SNP [dm6]	T	A	3.029e^-4	0.994	INTERGENIC	regulatory region REDfly_CRMs
3R	17208982	3R_17208982_DEL [dm3] 3R_21383260_DEL [dm6]	CAACCA	C	3.029e^-4	0.994	INTERGENIC	regulatory region REDfly_CRMs
3L	7317275	3L_7317275_SNP [dm3] 3L_7324175_SNP [dm6]	A	G	3.034e^-4	0.994	SYNONYMOUS_CODING Rint1 UPSTREAM RhoGEF4
2L	11912461	2L_11912461_SNP [dm3] 2L_11912461_SNP [dm6]	A	C	3.041e^-4	0.994	INTRON Pde1c
2L	12898733	2L_12898733_SNP [dm3] 2L_12898733_SNP [dm6]	C	T	3.056e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	3819525	2R_3819525_SNP [dm3] 2R_7932020_SNP [dm6]	G	A	3.070e^-4	0.994	SYNONYMOUS_CODING rnh1 UPSTREAM drosha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3R	13962362	3R_13962362_SNP [dm3] 3R_18136640_SNP [dm6]	A	T	3.075e^-4	0.994	INTERGENIC
2R	2969124	2R_2969124_SNP [dm3] 2R_7081619_SNP [dm6]	A	G	3.076e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16978020	2R_16978020_SNP [dm3] 2R_21090515_SNP [dm6]	T	A	3.076e^-4	0.994	NON_SYNONYMOUS_CODING Rbpn-5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	11871501	3R_11871501_SNP [dm3] 3R_16045779_SNP [dm6]	T	C	3.084e^-4	0.994	DOWNSTREAM CG10264 & 1 other INTRON CG10407
3R	11871553	3R_11871553_SNP [dm3] 3R_16045831_SNP [dm6]	G	A	3.084e^-4	0.994	NON_SYNONYMOUS_CODING CG10407 DOWNSTREAM CG10264 & 1 other
3R	11871572	3R_11871572_SNP [dm3] 3R_16045850_SNP [dm6]	G	C	3.084e^-4	0.994	NON_SYNONYMOUS_CODING CG10407 DOWNSTREAM ird5
3R	11871596	3R_11871596_SNP [dm3] 3R_16045874_SNP [dm6]	C	G	3.084e^-4	0.994	SYNONYMOUS_CODING CG10407 DOWNSTREAM ird5
3R	27284925	3R_27284925_SNP [dm3] 3R_31459203_SNP [dm6]	T	G	3.087e^-4	0.994	SYNONYMOUS_CODING lox DOWNSTREAM CG11334	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26815158	3R_26815158_SNP [dm3] 3R_30989436_SNP [dm6]	C	T	3.094e^-4	0.994	DOWNSTREAM CG31008 INTRON 5-HT7
X	11679885	X_11679885_SNP [dm3] X_11785852_SNP [dm6]	T	A	3.100e^-4	0.994	INTERGENIC
2L	3388407	2L_3388407_INS [dm3] 2L_3388407_INS [dm6]	T	TTGAATTTT	3.104e^-4	0.994	UTR_5_PRIME CG42460 UPSTREAM Sfp23F & 1 other
2R	11439867	2R_11439867_SNP [dm3] 2R_15552362_SNP [dm6]	G	A	3.105e^-4	0.994	INTERGENIC
2R	11439883	2R_11439883_SNP [dm3] 2R_15552378_SNP [dm6]	G	A	3.105e^-4	0.994	INTERGENIC
2L	14268001	2L_14268001_SNP [dm3] 2L_14268001_SNP [dm6]	G	T	3.112e^-4	0.994	INTRON wb	TF binding site mE1_TFBS_inv
3R	13924283	3R_13924283_SNP [dm3] 3R_18098561_SNP [dm6]	A	G	3.113e^-4	0.994	INTRON sr
X	2262701	X_2262701_SNP [dm3] X_2368668_SNP [dm6]	C	G	3.113e^-4	0.994	INTRON PsGEF	TF binding site mE1_TFBS_chinmo
2R	18570832	2R_18570832_SNP [dm3] 2R_22683327_SNP [dm6]	A	G	3.117e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc
X	5001081	X_5001081_SNP [dm3] X_5107048_SNP [dm6]	G	A	3.118e^-4	0.994	INTRON rg & 1 other
2L	14530840	2L_14530840_SNP [dm3] 2L_14530840_SNP [dm6]	T	C	3.125e^-4	0.994	UPSTREAM tRNA:G3:35Bd DOWNSTREAM tRNA:G3:35Be INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
2L	14531158	2L_14531158_DEL [dm3] 2L_14531158_DEL [dm6]	AGGGA	A	3.125e^-4	0.994	UPSTREAM tRNA:G3:35Bd & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	7280721	X_7280721_SNP [dm3] X_7386688_SNP [dm6]	A	G	3.142e^-4	0.994	INTRON CG1677 & 1 other
X	7280726	X_7280726_SNP [dm3] X_7386693_SNP [dm6]	C	T	3.142e^-4	0.994	INTRON CG1677 & 1 other
2L	5456110	2L_5456110_SNP [dm3] 2L_5456110_SNP [dm6]	T	A	3.145e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7056196	2L_7056196_SNP [dm3] 2L_7056196_SNP [dm6]	C	G	3.154e^-4	0.994	UPSTREAM Mnn1 DOWNSTREAM milt INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_zfh1
2L	7661967	2L_7661967_SNP [dm3] 2L_7661967_SNP [dm6]	C	A	3.194e^-4	0.994	INTRON Slob
2L	7661972	2L_7661972_SNP [dm3] 2L_7661972_SNP [dm6]	G	A	3.194e^-4	0.994	INTRON Slob
2R	19448827	2R_19448827_SNP [dm3] 2R_23561304_SNP [dm6]	C	T	3.204e^-4	0.994	SYNONYMOUS_CODING Pi3K59F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16668961	X_16668961_SNP [dm3] X_16774928_SNP [dm6]	T	A	3.208e^-4	0.994	INTRON if	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	16668962	X_16668962_SNP [dm3] X_16774929_SNP [dm6]	T	C	3.208e^-4	0.994	INTRON if	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	16668974	X_16668974_SNP [dm3] X_16774941_SNP [dm6]	G	A	3.208e^-4	0.994	INTRON if	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8486409	2R_8486409_SNP [dm3] 2R_12598904_SNP [dm6]	G	T	3.214e^-4	0.994	INTRON Amph
2L	5454462	2L_5454462_SNP [dm3] 2L_5454462_SNP [dm6]	G	A	3.215e^-4	0.994	INTERGENIC
X	1721280	X_1721280_SNP [dm3] X_1827247_SNP [dm6]	A	G	3.219e^-4	0.994	UPSTREAM CG42666 INTRON CG42666	transposable element FlyBase
2L	9149731	2L_9149731_SNP [dm3] 2L_9149731_SNP [dm6]	C	T	3.221e^-4	0.994	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5877647	X_5877647_SNP [dm3] X_5983614_SNP [dm6]	C	A	3.225e^-4	0.994	INTRON Grip
3R	5598180	3R_5598180_SNP [dm3] 3R_9772458_SNP [dm6]	G	A	3.248e^-4	0.994	NON_SYNONYMOUS_CODING Whamy UPSTREAM CG9471	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1119065	3L_1119065_SNP [dm3] 3L_1119065_SNP [dm6]	G	A	3.253e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18786402	2R_18786402_SNP [dm3] 2R_22898879_SNP [dm6]	C	T	3.271e^-4	0.994	INTRON nahoda
3R	5586166	3R_5586166_SNP [dm3] 3R_9760444_SNP [dm6]	G	A	3.279e^-4	0.994	SYNONYMOUS_CODING CG8417 DOWNSTREAM Snap24	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	5596159	3R_5596159_DEL [dm3] 3R_9770437_DEL [dm6]	CCT	C	3.279e^-4	0.994	DOWNSTREAM CG9471 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1063996	2L_1063996_SNP [dm3] 2L_1063996_SNP [dm6]	A	G	3.279e^-4	0.994	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	19361885	X_19361885_SNP [dm3] X_19467852_SNP [dm6]	C	G	3.283e^-4	0.994	INTRON kek5
X	18848549	X_18848549_SNP [dm3] X_18954516_SNP [dm6]	A	T	3.288e^-4	0.994	INTRON CG43759
2R	16861967	2R_16861967_SNP [dm3] 2R_20974462_SNP [dm6]	G	A	3.301e^-4	0.994	UPSTREAM CG15649 INTERGENIC
2L	8764349	2L_8764349_SNP [dm3] 2L_8764349_SNP [dm6]	T	C	3.306e^-4	0.994	DOWNSTREAM CG9463 INTERGENIC
2L	15754446	2L_15754446_SNP [dm3] 2L_15754446_SNP [dm6]	C	T	3.308e^-4	0.994	SYNONYMOUS_CODING l_2_35Df	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18651066	2R_18651066_SNP [dm3] 2R_22763561_SNP [dm6]	G	T	3.312e^-4	0.994	UPSTREAM CG13527 INTRON CG42260
2R	18651068	2R_18651068_SNP [dm3] 2R_22763563_SNP [dm6]	A	G	3.312e^-4	0.994	UPSTREAM CG13527 INTRON CG42260
2R	18651072	2R_18651072_INS [dm3] 2R_22763567_INS [dm6]	G	GTAATTGACTTGAG...	3.312e^-4	0.994	UPSTREAM CG13527 INTRON CG42260
3R	14927944	3R_14927944_INS [dm3] 3R_19102222_INS [dm6]	C	CTC	3.323e^-4	0.994	INTRON CG6040
2L	12333336	2L_12333336_SNP [dm3] 2L_12333336_SNP [dm6]	T	C	3.324e^-4	0.994	INTERGENIC
3L	6718518	3L_6718518_SNP [dm3] 3L_6725418_SNP [dm6]	G	T	3.328e^-4	0.994	UPSTREAM CR44523 INTERGENIC	regulatory region REDfly_CRMs
3L	5183348	3L_5183348_SNP [dm3] 3L_5190248_SNP [dm6]	A	T	3.329e^-4	0.994	INTRON shep
3R	11302374	3R_11302374_SNP [dm3] 3R_15476652_SNP [dm6]	G	A	3.345e^-4	0.994	UPSTREAM AdamTS-A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	9070908	2L_9070908_SNP [dm3] 2L_9070908_SNP [dm6]	C	T	3.359e^-4	0.994	UTR_5_PRIME CG31708 UPSTREAM CR44483 INTRON CG31708
2L	9070926	2L_9070926_SNP [dm3] 2L_9070926_SNP [dm6]	G	T	3.359e^-4	0.994	UTR_5_PRIME CG31708 UPSTREAM CR44483 INTRON CG31708
3L	18134467	3L_18134467_SNP [dm3] 3L_18141367_SNP [dm6]	C	T	3.361e^-4	0.994	INTRON gk
3L	8979278	3L_8979278_SNP [dm3] 3L_8986178_SNP [dm6]	T	C	3.365e^-4	0.994	UPSTREAM Galk & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	17209042	3R_17209042_DEL [dm3] 3R_21383320_DEL [dm6]	CCGTCTGCCTGTCCGTATGA...	C	3.367e^-4	0.994	INTERGENIC	regulatory region REDfly_CRMs
3R	14175028	3R_14175028_SNP [dm3] 3R_18349306_SNP [dm6]	A	T	3.368e^-4	0.994	INTRON CG15803
X	17677129	X_17677129_SNP [dm3] X_17783096_SNP [dm6]	T	A	3.378e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23015179	3R_23015179_SNP [dm3] 3R_27189457_SNP [dm6]	A	G	3.381e^-4	0.994	INTRON Ser	regulatory region REDfly_CRMs
2R	7813008	2R_7813008_SNP [dm3] 2R_11925503_SNP [dm6]	A	G	3.382e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_run
3L	2488490	3L_2488490_SNP [dm3] 3L_2488490_SNP [dm6]	T	C	3.408e^-4	0.994	UPSTREAM CG1146 INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9269478	2L_9269478_SNP [dm3] 2L_9269478_SNP [dm6]	A	G	3.412e^-4	0.994	INTRON Ggamma30A
3L	10716294	3L_10716294_SNP [dm3] 3L_10723194_SNP [dm6]	C	T	3.420e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	14387769	2R_14387769_SNP [dm3] 2R_18500264_SNP [dm6]	G	T	3.430e^-4	0.994	INTERGENIC
3L	9428215	3L_9428215_SNP [dm3] 3L_9435115_SNP [dm6]	G	A	3.437e^-4	0.994	SYNONYMOUS_CODING CG42526 UPSTREAM MTF-1 INTRON MTF-1
2R	16488143	2R_16488143_SNP [dm3] 2R_20600638_SNP [dm6]	C	T	3.441e^-4	0.994	INTRON bl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	17817059	3R_17817059_SNP [dm3] 3R_21991337_SNP [dm6]	A	T	3.449e^-4	0.994	INTRON Eip93F
2R	17427672	2R_17427672_SNP [dm3] 2R_21540167_SNP [dm6]	C	T	3.459e^-4	0.994	NON_SYNONYMOUS_CODING CG30283 UPSTREAM CG33226 INTRON Egfr	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	16336696	2R_16336696_SNP [dm3] 2R_20449191_SNP [dm6]	G	C	3.462e^-4	0.994	INTRON CG12484	TF binding site mE1_TFBS_inv
3L	1611627	3L_1611627_SNP [dm3] 3L_1611627_SNP [dm6]	G	C	3.465e^-4	0.994	NON_SYNONYMOUS_CODING CG12105 INTRON CG33791 & 1 other	TF binding site mE1_TFBS_chinmo
3L	11992174	3L_11992174_SNP [dm3] 3L_11999074_SNP [dm6]	G	C	3.479e^-4	0.994	UPSTREAM Grip163 DOWNSTREAM Pop2 INTRON Pop2
3L	19466907	3L_19466907_SNP [dm3] 3L_19473807_SNP [dm6]	A	G	3.490e^-4	0.994	DOWNSTREAM CG12519 INTERGENIC	TF binding site mE1_TFBS_inv
2L	16589400	2L_16589400_SNP [dm3] 2L_16589400_SNP [dm6]	A	G	3.519e^-4	0.994	INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16589418	2L_16589418_SNP [dm3] 2L_16589418_SNP [dm6]	A	G	3.519e^-4	0.994	INTRON CG42389	TF binding site BDTNP1_TFBS_dl
X	11679876	X_11679876_SNP [dm3] X_11785843_SNP [dm6]	A	T	3.519e^-4	0.994	INTERGENIC
2L	7080232	2L_7080232_INS [dm3] 2L_7080232_INS [dm6]	C	GTTGG	3.532e^-4	0.994	UPSTREAM CR44611 INTRON Pvf2
2L	8320072	2L_8320072_SNP [dm3] 2L_8320072_SNP [dm6]	G	T	3.542e^-4	0.994	UPSTREAM CG7787 & 1 other INTERGENIC
2R	12099557	2R_12099557_SNP [dm3] 2R_16212052_SNP [dm6]	T	C	3.551e^-4	0.994	INTRON mrj
2L	3449466	2L_3449466_SNP [dm3] 2L_3449466_SNP [dm6]	C	A	3.553e^-4	0.994	UPSTREAM Snx1 INTERGENIC
3L	1588556	3L_1588556_SNP [dm3] 3L_1588556_SNP [dm6]	C	A	3.554e^-4	0.994	INTRON CG13917
2L	9269721	2L_9269721_SNP [dm3] 2L_9269721_SNP [dm6]	G	T	3.556e^-4	0.994	INTRON Ggamma30A
2R	8917144	2R_8917144_SNP [dm3] 2R_13029639_SNP [dm6]	T	A	3.556e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6786901	2L_6786901_SNP [dm3] 2L_6786901_SNP [dm6]	A	G	3.583e^-4	0.994	UPSTREAM nrv1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	3148466	3L_3148466_DEL [dm3] 3L_3148466_DEL [dm6]	TGATTCATCA	T	3.590e^-4	0.994	UPSTREAM BtbVII & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3L	8949847	3L_8949847_SNP [dm3] 3L_8956747_SNP [dm6]	C	A	3.594e^-4	0.994	UPSTREAM mRpL12 DOWNSTREAM GNBP3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	8671633	3R_8671633_SNP [dm3] 3R_12845911_SNP [dm6]	G	A	3.604e^-4	0.994	INTRON beat-Va
2R	13272323	2R_13272323_SNP [dm3] 2R_17384818_SNP [dm6]	A	G	3.604e^-4	0.994	INTERGENIC
2L	8398623	2L_8398623_SNP [dm3] 2L_8398623_SNP [dm6]	A	G	3.613e^-4	0.994	UPSTREAM CG13386 DOWNSTREAM CG13385 INTERGENIC
2L	2081979	2L_2081979_SNP [dm3] 2L_2081979_SNP [dm6]	T	C	3.617e^-4	0.994	UPSTREAM CR44808 DOWNSTREAM CG12674 INTRON dpr3	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	3071282	2L_3071282_SNP [dm3] 2L_3071282_SNP [dm6]	C	T	3.621e^-4	0.994	NON_SYNONYMOUS_CODING toc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8672464	3L_8672464_SNP [dm3] 3L_8679364_SNP [dm6]	G	A	3.627e^-4	0.994	DOWNSTREAM h INTERGENIC	regulatory region REDfly_CRMs
X	19618281	X_19618281_SNP [dm3] X_19724248_SNP [dm6]	T	C	3.657e^-4	0.994	INTRON CG12531
X	19618299	X_19618299_SNP [dm3] X_19724266_SNP [dm6]	G	A	3.657e^-4	0.994	INTRON CG12531
X	19618327	X_19618327_DEL [dm3] X_19724294_DEL [dm6]	CAGGAAGATATTCTC...	C	3.657e^-4	0.994	INTRON CG12531
2R	14354223	2R_14354223_SNP [dm3] 2R_18466718_SNP [dm6]	A	G	3.690e^-4	0.994	INTRON CG30116	TF binding site mE1_TFBS_chinmo
2L	5265539	2L_5265539_SNP [dm3] 2L_5265539_SNP [dm6]	C	G	3.694e^-4	0.994	NON_SYNONYMOUS_CODING Cyp4ac1 UPSTREAM Cyp4ac2 INTRON tkv	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7631081	2R_7631081_SNP [dm3] 2R_11743576_SNP [dm6]	C	G	3.703e^-4	0.994	INTERGENIC
3L	8741998	3L_8741998_SNP [dm3] 3L_8748898_SNP [dm6]	A	G	3.710e^-4	0.994	DOWNSTREAM CG13306 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	2577361	3L_2577361_SNP [dm3] 3L_2577361_SNP [dm6]	G	A	3.723e^-4	0.994	INTRON msn	regulatory region REDfly_CRMs
3L	1071961	3L_1071961_DEL [dm3] 3L_1071961_DEL [dm6]	GTCA	G	3.725e^-4	0.994	INTRON bab1
2R	8486422	2R_8486422_DEL [dm3] 2R_12598917_DEL [dm6]	GCGCCC	G	3.726e^-4	0.994	INTRON Amph
3L	9754635	3L_9754635_SNP [dm3] 3L_9761535_SNP [dm6]	T	A	3.727e^-4	0.994	DOWNSTREAM CR45407 INTERGENIC	TF binding site BDTNP1_TFBS_z
2L	2701446	2L_2701446_SNP [dm3] 2L_2701446_SNP [dm6]	A	C	3.728e^-4	0.994	INTRON CG31690
2R	14992711	2R_14992711_SNP [dm3] 2R_19105206_SNP [dm6]	C	G	3.734e^-4	0.994	INTRON 5-HT1A
3R	17208970	3R_17208970_SNP [dm3] 3R_21383248_SNP [dm6]	A	G	3.742e^-4	0.994	INTERGENIC	regulatory region REDfly_CRMs
3R	17208980	3R_17208980_SNP [dm3] 3R_21383258_SNP [dm6]	T	C	3.742e^-4	0.994	INTERGENIC	regulatory region REDfly_CRMs
2L	2054681	2L_2054681_SNP [dm3] 2L_2054681_SNP [dm6]	A	C	3.759e^-4	0.994	SYNONYMOUS_CODING Or22c	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	16953723	X_16953723_SNP [dm3] X_17059690_SNP [dm6]	T	G	3.783e^-4	0.994	INTRON CG45002
3L	12085239	3L_12085239_SNP [dm3] 3L_12092139_SNP [dm6]	G	A	3.783e^-4	0.994	INTERGENIC
X	8347737	X_8347737_SNP [dm3] X_8453704_SNP [dm6]	G	T	3.783e^-4	0.994	INTRON org-1
3L	8973595	3L_8973595_SNP [dm3] 3L_8980495_SNP [dm6]	T	C	3.787e^-4	0.994	UPSTREAM CG5644 INTERGENIC
2R	10552250	2R_10552250_SNP [dm3] 2R_14664745_SNP [dm6]	T	G	3.807e^-4	0.994	SYNONYMOUS_CODING CG12861 DOWNSTREAM CG12860
3L	3151597	3L_3151597_SNP [dm3] 3L_3151597_SNP [dm6]	C	T	3.815e^-4	0.994	INTRON BtbVII	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5197114	3L_5197114_SNP [dm3] 3L_5204014_SNP [dm6]	C	T	3.819e^-4	0.994	INTRON shep
3L	13928143	3L_13928143_SNP [dm3] 3L_13935043_SNP [dm6]	T	G	3.841e^-4	0.994	DOWNSTREAM Gl INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	10580417	3R_10580417_SNP [dm3] 3R_14754695_SNP [dm6]	C	T	3.842e^-4	0.994	UPSTREAM CG7362 INTRON jvl
3L	8952890	3L_8952890_SNP [dm3] 3L_8959790_SNP [dm6]	A	G	3.843e^-4	0.994	SPLICE_SITE_REGION CG13313 INTRON CG13313
3R	25324429	3R_25324429_SNP [dm3] 3R_29498707_SNP [dm6]	G	T	3.849e^-4	0.994	UTR_3_PRIME CG2010 DOWNSTREAM Trc8	TF binding site mE1_TFBS_cad
3R	25324432	3R_25324432_SNP [dm3] 3R_29498710_SNP [dm6]	T	G	3.849e^-4	0.994	UTR_3_PRIME CG2010 DOWNSTREAM Trc8	TF binding site mE1_TFBS_cad
X	22047519	X_22047519_SNP [dm3] X_22645683_SNP [dm6]	T	G	3.875e^-4	0.994	INTERGENIC
2L	5266804	2L_5266804_SNP [dm3] 2L_5266804_SNP [dm6]	C	T	3.881e^-4	0.994	SYNONYMOUS_CODING Cyp4ac2 DOWNSTREAM Cyp4ac1 INTRON tkv
2R	17103010	2R_17103010_SNP [dm3] 2R_21215505_SNP [dm6]	A	C	3.896e^-4	0.994	UTR_3_PRIME CG15661 UPSTREAM CG4302
3L	7386509	3L_7386509_SNP [dm3] 3L_7393409_SNP [dm6]	C	T	3.901e^-4	0.994	INTRON CG8563
3L	7386518	3L_7386518_SNP [dm3] 3L_7393418_SNP [dm6]	G	C	3.901e^-4	0.994	INTRON CG8563
2R	17622792	2R_17622792_SNP [dm3] 2R_21735287_SNP [dm6]	G	T	3.912e^-4	0.994	INTERGENIC
3L	16997387	3L_16997387_INS [dm3] 3L_17004287_INS [dm6]	G	GTTTTACAAATATAATTGTC...	3.916e^-4	0.994	INTRON CG3764	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	16997394	3L_16997394_SNP [dm3] 3L_17004294_SNP [dm6]	C	A	3.916e^-4	0.994	INTRON CG3764	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	16997407	3L_16997407_SNP [dm3] 3L_17004307_SNP [dm6]	G	A	3.916e^-4	0.994	INTRON CG3764	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	26815037	3R_26815037_SNP [dm3] 3R_30989315_SNP [dm6]	A	G	3.924e^-4	0.994	DOWNSTREAM CG31008 INTRON 5-HT7
3R	26815369	3R_26815369_SNP [dm3] 3R_30989647_SNP [dm6]	C	T	3.924e^-4	0.994	SYNONYMOUS_CODING CG31008 INTRON 5-HT7
3R	26816126	3R_26816126_SNP [dm3] 3R_30990404_SNP [dm6]	G	C	3.924e^-4	0.994	UPSTREAM CG31008 INTRON 5-HT7
3R	26816152	3R_26816152_SNP [dm3] 3R_30990430_SNP [dm6]	T	C	3.924e^-4	0.994	UPSTREAM CG31008 INTRON 5-HT7
2L	2656061	2L_2656061_SNP [dm3] 2L_2656061_SNP [dm6]	T	C	3.926e^-4	0.994	SYNONYMOUS_CODING Prosbeta4R2 DOWNSTREAM Or23a
X	5897605	X_5897605_SNP [dm3] X_6003572_SNP [dm6]	C	T	3.943e^-4	0.994	INTRON CR44498
X	6730001	X_6730001_SNP [dm3] X_6835968_SNP [dm6]	A	G	3.945e^-4	0.994	SYNONYMOUS_CODING nonC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	7772981	X_7772981_DEL [dm3] X_7878948_DEL [dm6]	TGGAAAAATC	T	3.945e^-4	0.994	UPSTREAM Ir7d DOWNSTREAM Ir7e INTERGENIC
3R	22295914	3R_22295914_DEL [dm3] 3R_26470192_DEL [dm6]	AA	T	3.957e^-4	0.994	UTR_3_PRIME plum DOWNSTREAM CG5455 & 1 other
2L	7586213	2L_7586213_SNP [dm3] 2L_7586213_SNP [dm6]	C	T	3.963e^-4	0.994	INTERGENIC
3L	11011039	3L_11011039_SNP [dm3] 3L_11017939_SNP [dm6]	A	C	3.964e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	25146481	3R_25146481_SNP [dm3] 3R_29320759_SNP [dm6]	C	A	3.966e^-4	0.994	INTERGENIC
3R	25146529	3R_25146529_SNP [dm3] 3R_29320807_SNP [dm6]	T	C	3.966e^-4	0.994	INTERGENIC
3R	25740051	3R_25740051_SNP [dm3] 3R_29914329_SNP [dm6]	C	T	3.967e^-4	0.994	UTR_5_PRIME Capa DOWNSTREAM trp
3R	25740060	3R_25740060_SNP [dm3] 3R_29914338_SNP [dm6]	T	C	3.967e^-4	0.994	UTR_5_PRIME Capa DOWNSTREAM trp
2L	11981744	2L_11981744_SNP [dm3] 2L_11981744_SNP [dm6]	A	T	3.970e^-4	0.994	INTRON CG16965
2L	11981780	2L_11981780_SNP [dm3] 2L_11981780_SNP [dm6]	T	A	3.970e^-4	0.994	INTRON CG16965
3L	8239067	3L_8239067_SNP [dm3] 3L_8245967_SNP [dm6]	G	A	4.009e^-4	0.994	INTRON Dscam4
3L	3180585	3L_3180585_SNP [dm3] 3L_3180585_SNP [dm6]	C	A	4.012e^-4	0.994	SYNONYMOUS_CODING Girdin	TF binding site mE1_TFBS_sens
X	9294268	X_9294268_SNP [dm3] X_9400235_SNP [dm6]	C	A	4.015e^-4	0.994	INTRON mgl
2L	6535619	2L_6535619_SNP [dm3] 2L_6535619_SNP [dm6]	C	T	4.019e^-4	0.994	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	17183185	3R_17183185_SNP [dm3] 3R_21357463_SNP [dm6]	A	G	4.024e^-4	0.994	UTR_5_PRIME pre-mod_mdg4_-B & 1 other UTR_3_PRIME pre-mod_mdg4_-P & 2 others DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_ & 1 other
3L	16783920	3L_16783920_SNP [dm3] 3L_16790820_SNP [dm6]	G	T	4.024e^-4	0.994	SYNONYMOUS_CODING CG9674 UTR_3_PRIME CG9674	TF binding site mE1_TFBS_cad
2R	12044725	2R_12044725_SNP [dm3] 2R_16157220_SNP [dm6]	C	T	4.028e^-4	0.994	DOWNSTREAM CG10734 INTRON lbk	TF binding site BDTNP1_TFBS_prd
3R	11092994	3R_11092994_SNP [dm3] 3R_15267272_SNP [dm6]	T	C	4.029e^-4	0.994	SYNONYMOUS_CODING CG14864 DOWNSTREAM Oscp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	12186383	2R_12186383_SNP [dm3] 2R_16298878_SNP [dm6]	A	G	4.058e^-4	0.994	UTR_5_PRIME CG43265
2R	18653567	2R_18653567_SNP [dm3] 2R_22766062_SNP [dm6]	G	A	4.065e^-4	0.994	DOWNSTREAM CG13527 INTRON CG42260
3R	11093379	3R_11093379_SNP [dm3] 3R_15267657_SNP [dm6]	T	G	4.088e^-4	0.994	NON_SYNONYMOUS_CODING CG14864 DOWNSTREAM Oscp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
3L	11221510	3L_11221510_SNP [dm3] 3L_11228410_SNP [dm6]	T	G	4.093e^-4	0.994	UTR_3_PRIME CG42671 INTRON CG42671	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
X	16953714	X_16953714_SNP [dm3] X_17059681_SNP [dm6]	T	C	4.096e^-4	0.994	INTRON CG45002
3L	11852579	3L_11852579_DEL [dm3] 3L_11859479_DEL [dm6]	CGTAATCAGC	C	4.104e^-4	0.994	INTRON CG44837
3L	20173045	3L_20173045_SNP [dm3] 3L_20179945_SNP [dm6]	C	A	4.117e^-4	0.994	INTRON CG42674	TF binding site mE1_TFBS_HSA
X	16669011	X_16669011_SNP [dm3] X_16774978_SNP [dm6]	A	G	4.142e^-4	0.994	INTRON if	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4030379	3L_4030379_DEL [dm3] 3L_4030379_DEL [dm6]	TT	T	4.144e^-4	0.994	UTR_5_PRIME Gr64c UTR_3_PRIME Gr64b	TF binding site mE1_TFBS_cad
2R	19501329	2R_19501329_SNP [dm3] 2R_23613806_SNP [dm6]	T	G	4.153e^-4	0.994	INTRON CG17664 & 1 other
X	8709413	X_8709413_SNP [dm3] X_8815380_SNP [dm6]	C	T	4.178e^-4	0.994	INTERGENIC
X	7465352	X_7465352_SNP [dm3] X_7571319_SNP [dm6]	G	A	4.185e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7663187	2L_7663187_SNP [dm3] 2L_7663187_SNP [dm6]	A	G	4.192e^-4	0.994	INTRON Slob
2L	9419310	2L_9419310_INS [dm3] 2L_9419310_INS [dm6]	T	TGTAAAAATT	4.199e^-4	0.994	INTRON Mco1
3R	19882850	3R_19882850_SNP [dm3] 3R_24057128_SNP [dm6]	A	T	4.201e^-4	0.994	UTR_5_PRIME Hsp68	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_ttk
3L	3424462	3L_3424462_SNP [dm3] 3L_3424462_SNP [dm6]	G	A	4.207e^-4	0.994	UTR_5_PRIME sty
2L	4196350	2L_4196350_SNP [dm3] 2L_4196350_SNP [dm6]	G	C	4.208e^-4	0.994	INTRON CG3714	TF binding site mE1_TFBS_inv
3L	3175124	3L_3175124_SNP [dm3] 3L_3175124_SNP [dm6]	G	T	4.210e^-4	0.994	NON_SYNONYMOUS_CODING CG14964	TF binding site mE1_TFBS_chinmo
2R	12853231	2R_12853231_SNP [dm3] 2R_16965726_SNP [dm6]	C	G	4.213e^-4	0.994	DOWNSTREAM CR44376 INTERGENIC
X	7459056	X_7459056_SNP [dm3] X_7565023_SNP [dm6]	G	A	4.218e^-4	0.994	INTERGENIC
3R	5591964	3R_5591964_SNP [dm3] 3R_9766242_SNP [dm6]	A	G	4.224e^-4	0.994	UTR_3_PRIME MED6 DOWNSTREAM CG8478
3R	5595586	3R_5595586_SNP [dm3] 3R_9769864_SNP [dm6]	T	C	4.224e^-4	0.994	UTR_3_PRIME CG8481 UPSTREAM MED6 DOWNSTREAM CG9471	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11736275	X_11736275_INS [dm3] X_11842242_INS [dm6]	G	GTTTGG	4.225e^-4	0.994	DOWNSTREAM Cyp28c1 & 1 other INTERGENIC
2R	7402180	2R_7402180_SNP [dm3] 2R_11514675_SNP [dm6]	G	A	4.225e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_bcd
2L	7612492	2L_7612492_SNP [dm3] 2L_7612492_SNP [dm6]	T	A	4.239e^-4	0.994	INTRON CG6739
3R	25441345	3R_25441345_SNP [dm3] 3R_29615623_SNP [dm6]	G	A	4.239e^-4	0.994	INTRON alph
2R	17106039	2R_17106039_SNP [dm3] 2R_21218534_SNP [dm6]	C	T	4.248e^-4	0.994	UTR_3_PRIME ASPP UPSTREAM CG15661	TF binding site mE1_TFBS_cad
3R	21825644	3R_21825644_SNP [dm3] 3R_25999922_SNP [dm6]	G	A	4.268e^-4	0.994	UTR_5_PRIME E_spl_mgamma-HLH	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	11344643	2L_11344643_SNP [dm3] 2L_11344643_SNP [dm6]	A	T	4.279e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	8979555	3L_8979555_SNP [dm3] 3L_8986455_SNP [dm6]	A	C	4.283e^-4	0.994	UPSTREAM Galk & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Ubx
3R	5595792	3R_5595792_SNP [dm3] 3R_9770070_SNP [dm6]	G	A	4.287e^-4	0.994	DOWNSTREAM CG9471 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
3L	6713336	3L_6713336_SNP [dm3] 3L_6720236_SNP [dm6]	G	A	4.297e^-4	0.994	UPSTREAM ple INTERGENIC	regulatory region REDfly_CRMs
3L	13174265	3L_13174265_SNP [dm3] 3L_13181165_SNP [dm6]	A	G	4.302e^-4	0.994	INTERGENIC
2L	18908844	2L_18908844_SNP [dm3] 2L_18908844_SNP [dm6]	C	A	4.307e^-4	0.994	INTERGENIC
3R	14172480	3R_14172480_SNP [dm3] 3R_18346758_SNP [dm6]	A	T	4.316e^-4	0.994	INTRON CG15803
3R	22564690	3R_22564690_SNP [dm3] 3R_26738968_SNP [dm6]	C	T	4.321e^-4	0.994	DOWNSTREAM CG14247 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	8976666	3L_8976666_SNP [dm3] 3L_8983566_SNP [dm6]	G	T	4.338e^-4	0.994	NON_SYNONYMOUS_CODING Galk DOWNSTREAM CG13314	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	11699425	3R_11699425_SNP [dm3] 3R_15873703_SNP [dm6]	A	C	4.339e^-4	0.994	INTRON CG31183
3R	11699429	3R_11699429_SNP [dm3] 3R_15873707_SNP [dm6]	A	G	4.339e^-4	0.994	INTRON CG31183
2L	18732227	2L_18732227_SNP [dm3] 2L_18732227_SNP [dm6]	T	C	4.353e^-4	0.994	UTR_5_PRIME CG10348 UPSTREAM CG10348 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	2784024	2L_2784024_SNP [dm3] 2L_2784024_SNP [dm6]	G	A	4.355e^-4	0.994	UTR_3_PRIME Syt1 INTRON Syt1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19928580	2L_19928580_SNP [dm3] 2L_19928580_SNP [dm6]	C	T	4.361e^-4	0.994	INTRON sick
3R	24607893	3R_24607893_SNP [dm3] 3R_28782171_SNP [dm6]	C	T	4.361e^-4	0.994	INTERGENIC
X	11843367	X_11843367_SNP [dm3] X_11949334_SNP [dm6]	A	T	4.384e^-4	0.994	INTRON cac	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8966800	2R_8966800_DEL [dm3] 2R_13079295_DEL [dm6]	CGT	A	4.390e^-4	0.994	UTR_5_PRIME Drl-2
2L	9070819	2L_9070819_SNP [dm3] 2L_9070819_SNP [dm6]	T	A	4.391e^-4	0.994	UPSTREAM CR44483 INTRON CG31708
3R	20687232	3R_20687232_SNP [dm3] 3R_24861510_SNP [dm6]	A	G	4.399e^-4	0.994	DOWNSTREAM CG13640 INTERGENIC
2R	2917768	2R_2917768_SNP [dm3] 2R_7030263_SNP [dm6]	G	C	4.416e^-4	0.994	INTRON Tsp42Eg
X	650734	X_650734_SNP [dm3] X_756701_SNP [dm6]	C	T	4.419e^-4	0.994	INTRON CG5254
2R	8450717	2R_8450717_SNP [dm3] 2R_12563212_SNP [dm6]	T	G	4.422e^-4	0.994	UTR_3_PRIME fra DOWNSTREAM CG30056
3R	24576873	3R_24576873_SNP [dm3] 3R_28751151_SNP [dm6]	A	T	4.430e^-4	0.994	SYNONYMOUS_CODING CG10000
3R	24576876	3R_24576876_SNP [dm3] 3R_28751154_SNP [dm6]	T	A	4.430e^-4	0.994	SYNONYMOUS_CODING CG10000
3L	11371496	3L_11371496_SNP [dm3] 3L_11378396_SNP [dm6]	C	T	4.431e^-4	0.994	INTERGENIC
3R	14188850	3R_14188850_SNP [dm3] 3R_18363128_SNP [dm6]	A	G	4.433e^-4	0.994	SYNONYMOUS_CODING CG7669	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14188180	3R_14188180_SNP [dm3] 3R_18362458_SNP [dm6]	T	C	4.439e^-4	0.994	SYNONYMOUS_CODING CG7669	TF binding site mE1_TFBS_cad
2R	13779630	2R_13779630_SNP [dm3] 2R_17892125_SNP [dm6]	T	A	4.459e^-4	0.994	INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	16999000	3R_16999000_SNP [dm3] 3R_21173278_SNP [dm6]	A	T	4.468e^-4	0.994	INTRON SNF4Agamma
3R	21987854	3R_21987854_SNP [dm3] 3R_26162132_SNP [dm6]	G	A	4.470e^-4	0.994	INTERGENIC
3R	25160617	3R_25160617_SNP [dm3] 3R_29334895_SNP [dm6]	A	G	4.496e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12280729	2L_12280729_SNP [dm3] 2L_12280729_SNP [dm6]	G	A	4.503e^-4	0.994	INTRON aret	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	7805403	2R_7805403_SNP [dm3] 2R_11917898_SNP [dm6]	A	T	4.507e^-4	0.994	EXON CR44305	TF binding site BDTNP1_TFBS_prd
2L	11506704	2L_11506704_SNP [dm3] 2L_11506704_SNP [dm6]	T	C	4.540e^-4	0.994	SYNONYMOUS_CODING spz4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11506727	2L_11506727_SNP [dm3] 2L_11506727_SNP [dm6]	T	C	4.540e^-4	0.994	NON_SYNONYMOUS_CODING spz4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	3735212	X_3735212_SNP [dm3] X_3841179_SNP [dm6]	A	G	4.542e^-4	0.994	INTRON ec	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3R	5285694	3R_5285694_SNP [dm3] 3R_9459972_SNP [dm6]	T	A	4.544e^-4	0.994	UPSTREAM GstZ2 INTRON GstZ2	regulatory region REDfly_CRMs
3L	2865377	3L_2865377_SNP [dm3] 3L_2865377_SNP [dm6]	C	A	4.580e^-4	0.994	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8291312	2R_8291312_SNP [dm3] 2R_12403807_SNP [dm6]	T	C	4.585e^-4	0.994	INTRON Cpr49Ae	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_twi
2R	8291337	2R_8291337_SNP [dm3] 2R_12403832_SNP [dm6]	C	T	4.585e^-4	0.994	INTRON Cpr49Ae	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_twi
2R	7763382	2R_7763382_SNP [dm3] 2R_11875877_SNP [dm6]	C	T	4.609e^-4	0.994	SYNONYMOUS_CODING CG13185
2R	7763463	2R_7763463_SNP [dm3] 2R_11875958_SNP [dm6]	A	C	4.609e^-4	0.994	SYNONYMOUS_CODING CG13185
2R	6404821	2R_6404821_INS [dm3] 2R_10517316_INS [dm6]	T	TGGTTT	4.611e^-4	0.994	DOWNSTREAM lola INTRON lola
2R	18361504	2R_18361504_SNP [dm3] 2R_22473999_SNP [dm6]	G	A	4.615e^-4	0.994	SYNONYMOUS_CODING CG45062	TF binding site mE1_TFBS_cad
3R	18936756	3R_18936756_SNP [dm3] 3R_23111034_SNP [dm6]	T	C	4.618e^-4	0.994	INTRON CG13830
2R	17237869	2R_17237869_SNP [dm3] 2R_21350364_SNP [dm6]	G	C	4.624e^-4	0.994	SYNONYMOUS_CODING CG17974
3L	19046709	3L_19046709_INS [dm3] 3L_19053609_INS [dm6]	A	AGAAAAC	4.627e^-4	0.994	UPSTREAM CG43407 DOWNSTREAM CR44675 INTERGENIC
3L	19046711	3L_19046711_DEL [dm3] 3L_19053611_DEL [dm6]	AG	A	4.627e^-4	0.994	UPSTREAM CG43407 DOWNSTREAM CR44675 INTERGENIC
2L	16005797	2L_16005797_SNP [dm3] 2L_16005797_SNP [dm6]	T	A	4.633e^-4	0.994	UTR_3_PRIME CG31820 UPSTREAM CR44844 DOWNSTREAM CG13245 & 1 other INTRON beat-Ic
X	1402872	X_1402872_SNP [dm3] X_1508839_SNP [dm6]	G	A	4.634e^-4	0.994	INTRON inc	TF binding site mE1_TFBS_chinmo
X	8340662	X_8340662_SNP [dm3] X_8446629_SNP [dm6]	A	T	4.635e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11659305	2L_11659305_SNP [dm3] 2L_11659305_SNP [dm6]	G	A	4.645e^-4	0.994	DOWNSTREAM CR44497 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	2921974	2R_2921974_SNP [dm3] 2R_7034469_SNP [dm6]	A	G	4.646e^-4	0.994	SPLICE_SITE_REGION Tsp42Eh UPSTREAM Tsp42Ei INTRON Tsp42Eh
2R	5990691	2R_5990691_SNP [dm3] 2R_10103186_SNP [dm6]	T	C	4.656e^-4	0.994	UPSTREAM 14-3-3zeta INTRON 14-3-3zeta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18651201	2R_18651201_SNP [dm3] 2R_22763696_SNP [dm6]	A	G	4.661e^-4	0.994	UPSTREAM CG13527 INTRON CG42260
2L	12333386	2L_12333386_SNP [dm3] 2L_12333386_SNP [dm6]	T	C	4.661e^-4	0.994	INTERGENIC
2L	12333389	2L_12333389_DEL [dm3] 2L_12333389_DEL [dm6]	AG	A	4.661e^-4	0.994	INTERGENIC
3R	21982914	3R_21982914_SNP [dm3] 3R_26157192_SNP [dm6]	A	T	4.678e^-4	0.994	INTERGENIC
3L	8659933	3L_8659933_DEL [dm3] 3L_8666833_DEL [dm6]	CCC	C	4.680e^-4	0.994	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3L	12705369	3L_12705369_SNP [dm3] 3L_12712269_SNP [dm6]	G	C	4.694e^-4	0.994	INTERGENIC
3L	2104653	3L_2104653_SNP [dm3] 3L_2104653_SNP [dm6]	A	C	4.696e^-4	0.994	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_chinmo
2R	21083690	2R_21083690_SNP [dm3] 2R_25196167_SNP [dm6]	T	C	4.704e^-4	0.994	INTRON CG9380	transposable element FlyBase
2L	3141675	2L_3141675_SNP [dm3] 2L_3141675_SNP [dm6]	T	A	4.714e^-4	0.994	INTRON toc
3R	5584258	3R_5584258_SNP [dm3] 3R_9758536_SNP [dm6]	C	T	4.719e^-4	0.994	SYNONYMOUS_CODING CG8412
2R	16068648	2R_16068648_SNP [dm3] 2R_20181143_SNP [dm6]	C	T	4.739e^-4	0.994	INTERGENIC
3R	17941680	3R_17941680_SNP [dm3] 3R_22115958_SNP [dm6]	C	T	4.740e^-4	0.994	NON_SYNONYMOUS_CODING Ir94b DOWNSTREAM Ir94a
3R	17941793	3R_17941793_SNP [dm3] 3R_22116071_SNP [dm6]	T	G	4.740e^-4	0.994	SYNONYMOUS_CODING Ir94b DOWNSTREAM Ir94a
2L	7056202	2L_7056202_INS [dm3] 2L_7056202_INS [dm6]	T	TT	4.741e^-4	0.994	UPSTREAM Mnn1 DOWNSTREAM milt INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_zfh1
2L	7056204	2L_7056204_SNP [dm3] 2L_7056204_SNP [dm6]	C	A	4.741e^-4	0.994	UPSTREAM Mnn1 DOWNSTREAM milt INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_zfh1
2R	6738071	2R_6738071_DEL [dm3] 2R_10850566_DEL [dm6]	CACC	C	4.754e^-4	0.994	INTRON CG30015	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15088473	3R_15088473_SNP [dm3] 3R_19262751_SNP [dm6]	T	C	4.758e^-4	0.994	INTERGENIC
3L	2105126	3L_2105126_SNP [dm3] 3L_2105126_SNP [dm6]	T	C	4.776e^-4	0.994	INTRON sls	TF binding site mE1_TFBS_chinmo
X	5409177	X_5409177_DEL [dm3] X_5515144_DEL [dm6]	GATGCATCTGAAACTG...	G	4.776e^-4	0.994	INTERGENIC
3L	18133195	3L_18133195_INS [dm3] 3L_18140095_INS [dm6]	T	AAA	4.776e^-4	0.994	INTRON gk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11998225	3L_11998225_SNP [dm3] 3L_12005125_SNP [dm6]	A	G	4.791e^-4	0.994	INTRON CG6928
2R	12381321	2R_12381321_SNP [dm3] 2R_16493816_SNP [dm6]	C	T	4.798e^-4	0.994	DOWNSTREAM S-Lap8 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	6298292	3R_6298292_SNP [dm3] 3R_10472570_SNP [dm6]	A	C	4.798e^-4	0.994	INTERGENIC
3R	20308101	3R_20308101_SNP [dm3] 3R_24482379_SNP [dm6]	C	T	4.820e^-4	0.994	INTERGENIC
3R	10204236	3R_10204236_SNP [dm3] 3R_14378514_SNP [dm6]	G	A	4.826e^-4	0.994	INTERGENIC
3L	19249565	3L_19249565_SNP [dm3] 3L_19256465_SNP [dm6]	T	C	4.837e^-4	0.994	SYNONYMOUS_CODING rept DOWNSTREAM nes	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	4655189	3L_4655189_SNP [dm3] 3L_4655189_SNP [dm6]	T	A	4.846e^-4	0.994	INTRON axo
3L	8978455	3L_8978455_SNP [dm3] 3L_8985355_SNP [dm6]	G	A	4.849e^-4	0.994	INTRON Galk	TF binding site BDTNP1_TFBS_dl
X	4285620	X_4285620_SNP [dm3] X_4391587_SNP [dm6]	C	T	4.866e^-4	0.994	INTRON CR32773	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	13964503	2L_13964503_SNP [dm3] 2L_13964503_SNP [dm6]	G	A	4.872e^-4	0.994	DOWNSTREAM NimB2 INTRON NimB1	TF binding site mE1_TFBS_chinmo
X	11834451	X_11834451_SNP [dm3] X_11940418_SNP [dm6]	A	T	4.874e^-4	0.994	INTRON cac
2L	11944812	2L_11944812_SNP [dm3] 2L_11944812_SNP [dm6]	C	A	4.886e^-4	0.994	INTRON Cry	TF binding site mE1_TFBS_cad
X	9405654	X_9405654_SNP [dm3] X_9511621_SNP [dm6]	G	A	4.892e^-4	0.994	INTRON CG32700 & 1 other
X	13233544	X_13233544_SNP [dm3] X_13339511_SNP [dm6]	T	C	4.894e^-4	0.994	SYNONYMOUS_CODING CG15747	TF binding site mE1_TFBS_sens
X	6429466	X_6429466_SNP [dm3] X_6535433_SNP [dm6]	T	C	4.900e^-4	0.994	INTRON dx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	16408082	3L_16408082_SNP [dm3] 3L_16414982_SNP [dm6]	C	T	4.909e^-4	0.994	DOWNSTREAM CG4573 INTRON TMS1
3R	26987188	3R_26987188_SNP [dm3] 3R_31161466_SNP [dm6]	C	G	4.924e^-4	0.994	INTRON Gycbeta100B & 1 other
2R	17427710	2R_17427710_SNP [dm3] 2R_21540205_SNP [dm6]	G	A	4.926e^-4	0.994	UPSTREAM CG33226 INTRON Egfr & 1 other	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3L	13895797	3L_13895797_SNP [dm3] 3L_13902697_SNP [dm6]	C	A	4.928e^-4	0.994	UTR_5_PRIME dysc
3L	6701344	3L_6701344_SNP [dm3] 3L_6708244_SNP [dm6]	T	C	4.928e^-4	0.994	INTRON CG8519
3L	6118823	3L_6118823_SNP [dm3] 3L_6125723_SNP [dm6]	G	T	4.931e^-4	0.994	NON_SYNONYMOUS_CODING l_3_mbn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	21406667	3R_21406667_SNP [dm3] 3R_25580945_SNP [dm6]	T	A	4.931e^-4	0.994	DOWNSTREAM CG4582 INTRON msi
3L	20831350	3L_20831350_SNP [dm3] 3L_20838250_SNP [dm6]	A	C	4.934e^-4	0.994	UTR_5_PRIME CG13255 DOWNSTREAM CSN3
2R	7769494	2R_7769494_SNP [dm3] 2R_11881989_SNP [dm6]	C	T	4.940e^-4	0.994	SYNONYMOUS_CODING CG13185
2R	18309209	2R_18309209_SNP [dm3] 2R_22421704_SNP [dm6]	T	A	4.940e^-4	0.994	SYNONYMOUS_CODING rad50	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25444559	3R_25444559_SNP [dm3] 3R_29618837_SNP [dm6]	G	T	4.942e^-4	0.994	UPSTREAM CG1907 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	25569627	3R_25569627_SNP [dm3] 3R_29743905_SNP [dm6]	C	T	4.961e^-4	0.994	SYNONYMOUS_CODING CG7609	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	5838704	3R_5838704_SNP [dm3] 3R_10012982_SNP [dm6]	G	C	4.961e^-4	0.994	SYNONYMOUS_CODING Mical INTRON Mical
3R	15786382	3R_15786382_SNP [dm3] 3R_19960660_SNP [dm6]	T	C	4.973e^-4	0.994	INTRON Hs6st
3R	11093393	3R_11093393_SNP [dm3] 3R_15267671_SNP [dm6]	G	T	4.992e^-4	0.994	SYNONYMOUS_CODING CG14864 UPSTREAM Zip88E DOWNSTREAM Oscp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
3R	11093604	3R_11093604_SNP [dm3] 3R_15267882_SNP [dm6]	T	C	4.992e^-4	0.994	NON_SYNONYMOUS_CODING CG14864 UPSTREAM Zip88E	TF binding site BDTNP1_TFBS_sna mE1_TFBS_GATAe mE1_TFBS_HSA
3R	11093606	3R_11093606_SNP [dm3] 3R_15267884_SNP [dm6]	T	G	4.992e^-4	0.994	SYNONYMOUS_CODING CG14864 UPSTREAM Zip88E	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3R	11093681	3R_11093681_SNP [dm3] 3R_15267959_SNP [dm6]	G	C	4.992e^-4	0.994	SYNONYMOUS_CODING CG14864 UPSTREAM Zip88E	TF binding site mE1_TFBS_HSA
2R	13779638	2R_13779638_SNP [dm3] 2R_17892133_SNP [dm6]	G	A	5.006e^-4	0.994	INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	16327875	2R_16327875_SNP [dm3] 2R_20440370_SNP [dm6]	A	C	5.010e^-4	0.994	INTRON CG12484	TF binding site mE1_TFBS_inv
2L	1678404	2L_1678404_SNP [dm3] 2L_1678404_SNP [dm6]	C	T	5.029e^-4	0.994	INTRON chinmo
2L	16529793	2L_16529793_SNP [dm3] 2L_16529793_SNP [dm6]	G	A	5.041e^-4	0.994	UPSTREAM snoRNA:Me28S-C1237 INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc
3R	15565684	3R_15565684_SNP [dm3] 3R_19739962_SNP [dm6]	A	G	5.064e^-4	0.994	INTRON GluClalpha
2L	7689901	2L_7689901_SNP [dm3] 2L_7689901_SNP [dm6]	A	T	5.067e^-4	0.994	SYNONYMOUS_CODING CG18585 DOWNSTREAM Myo28B1	TF binding site mE1_TFBS_chinmo
3L	3138778	3L_3138778_SNP [dm3] 3L_3138778_SNP [dm6]	G	A	5.069e^-4	0.994	INTRON CG11537
2L	10355975	2L_10355975_SNP [dm3] 2L_10355975_SNP [dm6]	C	T	5.078e^-4	0.994	SYNONYMOUS_CODING CG5367 UPSTREAM CG5045
3L	10560349	3L_10560349_SNP [dm3] 3L_10567249_SNP [dm6]	T	C	5.092e^-4	0.994	INTRON A2bp1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	4198340	2L_4198340_SNP [dm3] 2L_4198340_SNP [dm6]	T	C	5.100e^-4	0.994	UPSTREAM CG3714 DOWNSTREAM ft INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	18136315	3L_18136315_SNP [dm3] 3L_18143215_SNP [dm6]	C	T	5.115e^-4	0.994	INTRON gk
X	17677254	X_17677254_SNP [dm3] X_17783221_SNP [dm6]	T	C	5.115e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17610994	2R_17610994_SNP [dm3] 2R_21723489_SNP [dm6]	C	A	5.116e^-4	0.994	SYNONYMOUS_CODING LBR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10719616	X_10719616_SNP [dm3] X_10825583_SNP [dm6]	C	A	5.127e^-4	0.994	DOWNSTREAM CR45624 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16953703	X_16953703_SNP [dm3] X_17059670_SNP [dm6]	T	A	5.130e^-4	0.994	INTRON CG45002
2L	12967710	2L_12967710_SNP [dm3] 2L_12967710_SNP [dm6]	A	G	5.136e^-4	0.994	SYNONYMOUS_CODING CG16800
2R	10100859	2R_10100859_SNP [dm3] 2R_14213354_SNP [dm6]	C	A	5.136e^-4	0.994	UPSTREAM Sox15 INTERGENIC
2R	8451266	2R_8451266_SNP [dm3] 2R_12563761_SNP [dm6]	C	T	5.136e^-4	0.994	UTR_3_PRIME fra DOWNSTREAM CG33775
X	16930961	X_16930961_SNP [dm3] X_17036928_SNP [dm6]	G	A	5.139e^-4	0.994	INTRON CG45002
2L	4985803	2L_4985803_SNP [dm3] 2L_4985803_SNP [dm6]	A	T	5.176e^-4	0.994	INTRON CG34126	TF binding site mE1_TFBS_cad
2R	21080912	2R_21080912_DEL [dm3] 2R_25193389_DEL [dm6]	ACAGACAAATGGCAGCTCTT...	TCATT	5.186e^-4	0.994	INTRON CG9380
2R	21081057	2R_21081057_SNP [dm3] 2R_25193534_SNP [dm6]	C	T	5.186e^-4	0.994	INTRON CG9380
2R	8912178	2R_8912178_SNP [dm3] 2R_13024673_SNP [dm6]	T	C	5.188e^-4	0.994	INTERGENIC
2L	8530708	2L_8530708_SNP [dm3] 2L_8530708_SNP [dm6]	G	T	5.188e^-4	0.994	INTRON CG17834
3R	23184735	3R_23184735_SNP [dm3] 3R_27359013_SNP [dm6]	G	A	5.206e^-4	0.994	UPSTREAM CG42534 INTRON CG42534
X	12622591	X_12622591_SNP [dm3] X_12728558_SNP [dm6]	A	G	5.206e^-4	0.994	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5347667	X_5347667_DEL [dm3] X_5453634_DEL [dm6]	TTCAGTGCGT	T	5.216e^-4	0.994	INTRON SPR
X	13370787	X_13370787_SNP [dm3] X_13476754_SNP [dm6]	C	T	5.227e^-4	0.994	INTRON Neto
2R	6746413	2R_6746413_SNP [dm3] 2R_10858908_SNP [dm6]	A	G	5.239e^-4	0.994	UPSTREAM CR44302 INTRON CG30015
X	7670147	X_7670147_SNP [dm3] X_7776114_SNP [dm6]	T	C	5.240e^-4	0.994	INTERGENIC
2L	13745149	2L_13745149_DEL [dm3] 2L_13745149_DEL [dm6]	AAA	A	5.246e^-4	0.994	INTERGENIC
X	5866221	X_5866221_SNP [dm3] X_5972188_SNP [dm6]	A	C	5.266e^-4	0.994	INTRON Grip
3R	14190005	3R_14190005_SNP [dm3] 3R_18364283_SNP [dm6]	G	A	5.269e^-4	0.994	UTR_3_PRIME WRNexo DOWNSTREAM CG7669
3L	7985519	3L_7985519_SNP [dm3] 3L_7992419_SNP [dm6]	T	C	5.271e^-4	0.994	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	6298290	3R_6298290_SNP [dm3] 3R_10472568_SNP [dm6]	T	A	5.274e^-4	0.994	INTERGENIC
3L	11477512	3L_11477512_SNP [dm3] 3L_11484412_SNP [dm6]	A	T	5.280e^-4	0.994	INTERGENIC
2R	21083835	2R_21083835_SNP [dm3] 2R_25196312_SNP [dm6]	C	A	5.282e^-4	0.994	INTRON CG9380	transposable element FlyBase
2L	3843267	2L_3843267_SNP [dm3] 2L_3843267_SNP [dm6]	C	A	5.297e^-4	0.994	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	4193746	2L_4193746_SNP [dm3] 2L_4193746_SNP [dm6]	C	A	5.301e^-4	0.994	INTRON CG3714	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3R	2131070	3R_2131070_SNP [dm3] 3R_6305348_SNP [dm6]	A	G	5.306e^-4	0.994	NON_SYNONYMOUS_CODING Osi16
2R	18786419	2R_18786419_DEL [dm3] 2R_22898896_DEL [dm6]	TGCT	T	5.312e^-4	0.994	INTRON nahoda
2L	1056746	2L_1056746_SNP [dm3] 2L_1056746_SNP [dm6]	G	T	5.320e^-4	0.994	INTRON S	TF binding site BDTNP1_TFBS_da
2L	13727503	2L_13727503_SNP [dm3] 2L_13727503_SNP [dm6]	C	A	5.321e^-4	0.994	INTERGENIC
2L	11946687	2L_11946687_INS [dm3] 2L_11946687_INS [dm6]	T	TT	5.324e^-4	0.994	UTR_3_PRIME Cry
3R	21976091	3R_21976091_SNP [dm3] 3R_26150369_SNP [dm6]	A	G	5.326e^-4	0.994	INTERGENIC
3R	5853949	3R_5853949_SNP [dm3] 3R_10028227_SNP [dm6]	G	A	5.327e^-4	0.994	INTRON Mical
3R	24351630	3R_24351630_SNP [dm3] 3R_28525908_SNP [dm6]	G	A	5.341e^-4	0.994	SYNONYMOUS_CODING Ppn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20024511	X_20024511_SNP [dm3] X_20130478_SNP [dm6]	G	T	5.347e^-4	0.994	DOWNSTREAM CG42582 INTERGENIC
2R	13999093	2R_13999093_SNP [dm3] 2R_18111588_SNP [dm6]	C	T	5.356e^-4	0.994	INTERGENIC
2L	7056240	2L_7056240_SNP [dm3] 2L_7056240_SNP [dm6]	T	C	5.359e^-4	0.994	UPSTREAM Mnn1 DOWNSTREAM milt INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_zfh1
2R	8966797	2R_8966797_SNP [dm3] 2R_13079292_SNP [dm6]	A	T	5.367e^-4	0.994	START_GAINED Drl-2 UTR_5_PRIME Drl-2
3L	22117303	3L_22117303_SNP [dm3] 3L_22124203_SNP [dm6]	C	T	5.378e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_cad
3R	25146498	3R_25146498_SNP [dm3] 3R_29320776_SNP [dm6]	G	A	5.386e^-4	0.994	INTERGENIC
3R	11088937	3R_11088937_SNP [dm3] 3R_15263215_SNP [dm6]	T	C	5.386e^-4	0.994	UPSTREAM Set & 1 other INTRON Su_var_3-9 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	3633594	3L_3633594_SNP [dm3] 3L_3633594_SNP [dm6]	T	C	5.391e^-4	0.994	INTRON dar1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9270007	2L_9270007_SNP [dm3] 2L_9270007_SNP [dm6]	A	G	5.402e^-4	0.994	INTRON Ggamma30A
X	22072654	X_22072654_SNP [dm3] X_22670818_SNP [dm6]	C	T	5.407e^-4	0.994	INTRON CR44997
2R	16569563	2R_16569563_SNP [dm3] 2R_20682058_SNP [dm6]	G	C	5.413e^-4	0.994	INTERGENIC
3R	22224449	3R_22224449_SNP [dm3] 3R_26398727_SNP [dm6]	A	G	5.416e^-4	0.994	INTERGENIC
2L	7492128	2L_7492128_SNP [dm3] 2L_7492128_SNP [dm6]	C	T	5.419e^-4	0.994	INTRON Ziz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	7492141	2L_7492141_SNP [dm3] 2L_7492141_SNP [dm6]	C	A	5.419e^-4	0.994	INTRON Ziz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	11601138	2L_11601138_SNP [dm3] 2L_11601138_SNP [dm6]	A	G	5.425e^-4	0.994	INTRON kek2
X	1993351	X_1993351_INS [dm3] X_2099318_INS [dm6]	A	AA	5.425e^-4	0.994	INTRON csw	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15741234	2L_15741234_SNP [dm3] 2L_15741234_SNP [dm6]	A	C	5.431e^-4	0.994	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12381432	2R_12381432_DEL [dm3] 2R_16493927_DEL [dm6]	TCT	T	5.442e^-4	0.994	DOWNSTREAM S-Lap8 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	6292846	3R_6292846_INS [dm3] 3R_10467124_INS [dm6]	G	GATTCG	5.443e^-4	0.994	INTERGENIC
2R	7767733	2R_7767733_SNP [dm3] 2R_11880228_SNP [dm6]	G	A	5.451e^-4	0.994	SYNONYMOUS_CODING CG13185
3L	19033078	3L_19033078_SNP [dm3] 3L_19039978_SNP [dm6]	G	A	5.451e^-4	0.994	INTRON nkd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	12827879	2R_12827879_SNP [dm3] 2R_16940374_SNP [dm6]	A	G	5.458e^-4	0.994	INTRON Pkc53E
2L	2781731	2L_2781731_SNP [dm3] 2L_2781731_SNP [dm6]	G	A	5.473e^-4	0.994	UTR_3_PRIME Syt1
3L	12085200	3L_12085200_SNP [dm3] 3L_12092100_SNP [dm6]	C	T	5.482e^-4	0.994	INTERGENIC
2L	15754467	2L_15754467_SNP [dm3] 2L_15754467_SNP [dm6]	T	C	5.486e^-4	0.994	SYNONYMOUS_CODING l_2_35Df	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	478636	3L_478636_SNP [dm3] 3L_478636_SNP [dm6]	T	G	5.496e^-4	0.994	INTRON klar	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	12133535	2L_12133535_SNP [dm3] 2L_12133535_SNP [dm6]	G	A	5.500e^-4	0.994	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	12133536	2L_12133536_SNP [dm3] 2L_12133536_SNP [dm6]	G	A	5.500e^-4	0.994	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	12133538	2L_12133538_SNP [dm3] 2L_12133538_SNP [dm6]	C	T	5.500e^-4	0.994	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	12133554	2L_12133554_SNP [dm3] 2L_12133554_SNP [dm6]	G	C	5.500e^-4	0.994	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	11351224	3R_11351224_SNP [dm3] 3R_15525502_SNP [dm6]	T	G	5.501e^-4	0.994	INTERGENIC
2L	2784140	2L_2784140_DEL [dm3] 2L_2784140_DEL [dm6]	GG	G	5.511e^-4	0.994	UTR_3_PRIME Syt1 INTRON Syt1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12127395	2L_12127395_SNP [dm3] 2L_12127395_SNP [dm6]	G	A	5.525e^-4	0.994	SYNONYMOUS_CODING CG17211
2L	3449465	2L_3449465_SNP [dm3] 2L_3449465_SNP [dm6]	C	A	5.534e^-4	0.994	UPSTREAM Snx1 INTERGENIC
2L	3449476	2L_3449476_SNP [dm3] 2L_3449476_SNP [dm6]	T	C	5.534e^-4	0.994	UPSTREAM Snx1 INTERGENIC
3L	467545	3L_467545_SNP [dm3] 3L_467545_SNP [dm6]	A	G	5.535e^-4	0.994	INTRON klar
3L	5303722	3L_5303722_SNP [dm3] 3L_5310622_SNP [dm6]	G	C	5.541e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	7915834	3R_7915834_SNP [dm3] 3R_12090112_SNP [dm6]	A	G	5.545e^-4	0.994	INTRON CG14741	TF binding site mE1_TFBS_Trl
3R	17941799	3R_17941799_SNP [dm3] 3R_22116077_SNP [dm6]	C	A	5.555e^-4	0.994	SYNONYMOUS_CODING Ir94b DOWNSTREAM Ir94a
2R	17257113	2R_17257113_SNP [dm3] 2R_21369608_SNP [dm6]	G	A	5.568e^-4	0.994	INTRON cv-2	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18654235	3R_18654235_SNP [dm3] 3R_22828513_SNP [dm6]	G	A	5.582e^-4	0.994	INTERGENIC
3R	11093571	3R_11093571_SNP [dm3] 3R_15267849_SNP [dm6]	A	G	5.588e^-4	0.994	NON_SYNONYMOUS_CODING CG14864 UPSTREAM Zip88E	TF binding site BDTNP1_TFBS_sna mE1_TFBS_GATAe mE1_TFBS_HSA
3R	11858795	3R_11858795_SNP [dm3] 3R_16033073_SNP [dm6]	T	C	5.592e^-4	0.994	INTRON pnr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	12545372	2R_12545372_SNP [dm3] 2R_16657867_SNP [dm6]	T	A	5.620e^-4	0.994	INTRON Picot
2R	12545373	2R_12545373_SNP [dm3] 2R_16657868_SNP [dm6]	A	T	5.620e^-4	0.994	INTRON Picot
3R	13962364	3R_13962364_SNP [dm3] 3R_18136642_SNP [dm6]	G	A	5.623e^-4	0.994	INTERGENIC
3R	5847785	3R_5847785_SNP [dm3] 3R_10022063_SNP [dm6]	A	G	5.634e^-4	0.994	UPSTREAM Mical DOWNSTREAM CG31407 INTRON Mical	TF binding site mE1_TFBS_inv
X	474981	X_474981_SNP [dm3] X_580948_SNP [dm6]	A	G	5.634e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	1959277	3L_1959277_SNP [dm3] 3L_1959277_SNP [dm6]	G	A	5.636e^-4	0.994	INTRON mv
2R	18571118	2R_18571118_SNP [dm3] 2R_22683613_SNP [dm6]	G	A	5.639e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc mE1_TFBS_HSA
3R	14190001	3R_14190001_SNP [dm3] 3R_18364279_SNP [dm6]	A	G	5.658e^-4	0.994	UTR_3_PRIME WRNexo DOWNSTREAM CG7669
3L	2659255	3L_2659255_SNP [dm3] 3L_2659255_SNP [dm6]	C	G	5.660e^-4	0.994	UPSTREAM CG33233 INTRON Fife	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2659364	3L_2659364_DEL [dm3] 3L_2659364_DEL [dm6]	GCC	AA	5.660e^-4	0.994	UPSTREAM CG33233 INTRON Fife	TF binding site mE1_TFBS_chinmo
X	10465507	X_10465507_SNP [dm3] X_10571474_SNP [dm6]	G	C	5.667e^-4	0.994	INTRON spri
3L	7414441	3L_7414441_SNP [dm3] 3L_7421341_SNP [dm6]	A	C	5.682e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_run
3L	7414571	3L_7414571_SNP [dm3] 3L_7421471_SNP [dm6]	A	T	5.682e^-4	0.994	INTERGENIC
2L	4165035	2L_4165035_SNP [dm3] 2L_4165035_SNP [dm6]	A	G	5.682e^-4	0.994	SYNONYMOUS_CODING Or24a
2L	13594733	2L_13594733_SNP [dm3] 2L_13594733_SNP [dm6]	T	A	5.693e^-4	0.994	DOWNSTREAM CG9254 INTRON kuz
2L	13114603	2L_13114603_SNP [dm3] 2L_13114603_SNP [dm6]	A	G	5.701e^-4	0.994	INTERGENIC
3L	12705144	3L_12705144_INS [dm3] 3L_12712044_INS [dm6]	T	TGAAATATA	5.703e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_D
3L	12705165	3L_12705165_DEL [dm3] 3L_12712065_DEL [dm6]	AG	A	5.703e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_D
3L	12705307	3L_12705307_SNP [dm3] 3L_12712207_SNP [dm6]	T	G	5.703e^-4	0.994	INTERGENIC
3L	12705308	3L_12705308_SNP [dm3] 3L_12712208_SNP [dm6]	T	A	5.703e^-4	0.994	INTERGENIC
3R	21032593	3R_21032593_SNP [dm3] 3R_25206871_SNP [dm6]	T	G	5.705e^-4	0.994	INTRON CG13654 & 1 other
3L	4477325	3L_4477325_SNP [dm3] 3L_4477325_SNP [dm6]	G	A	5.710e^-4	0.994	INTERGENIC
3R	16068351	3R_16068351_DEL [dm3] 3R_20242629_DEL [dm6]	GGCCAAGAAGCAACCAAGTT...	G	5.725e^-4	0.994	INTRON Nlg4
3R	18806094	3R_18806094_SNP [dm3] 3R_22980372_SNP [dm6]	C	G	5.725e^-4	0.994	INTERGENIC
2R	9225555	2R_9225555_SNP [dm3] 2R_13338050_SNP [dm6]	T	A	5.727e^-4	0.994	INTRON CR44206	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	10194092	2L_10194092_SNP [dm3] 2L_10194092_SNP [dm6]	A	G	5.732e^-4	0.994	INTRON Sur	TF binding site mE1_TFBS_cad
3L	16987487	3L_16987487_DEL [dm3] 3L_16994387_DEL [dm6]	ACAAGAAACAGAA...	A	5.733e^-4	0.994	UTR_3_PRIME Exn DOWNSTREAM CG3764 & 1 other INTRAGENIC Exn INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	27284880	3R_27284880_SNP [dm3] 3R_31459158_SNP [dm6]	G	A	5.739e^-4	0.994	SYNONYMOUS_CODING lox DOWNSTREAM CG11334	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	16415542	X_16415542_SNP [dm3] X_16521509_SNP [dm6]	G	T	5.742e^-4	0.994	INTRON para
2L	14237873	2L_14237873_SNP [dm3] 2L_14237873_SNP [dm6]	A	G	5.745e^-4	0.994	INTERGENIC
3L	12705191	3L_12705191_DEL [dm3] 3L_12712091_DEL [dm6]	AAATATCCTA	A	5.751e^-4	0.994	INTERGENIC
3R	10411610	3R_10411610_SNP [dm3] 3R_14585888_SNP [dm6]	A	T	5.767e^-4	0.994	INTRON stumps	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	10411612	3R_10411612_DEL [dm3] 3R_14585890_DEL [dm6]	GA	C	5.767e^-4	0.994	INTRON stumps	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3446247	2L_3446247_SNP [dm3] 2L_3446247_SNP [dm6]	A	C	5.771e^-4	0.994	INTRON CG2772	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2856776	2L_2856776_SNP [dm3] 2L_2856776_SNP [dm6]	C	A	5.778e^-4	0.994	UTR_3_PRIME RpS21 UPSTREAM CG3104 & 1 other DOWNSTREAM RpS21	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
2L	2856783	2L_2856783_SNP [dm3] 2L_2856783_SNP [dm6]	A	C	5.778e^-4	0.994	UTR_3_PRIME RpS21 UPSTREAM CG2991 DOWNSTREAM RpS21	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
2L	2701445	2L_2701445_SNP [dm3] 2L_2701445_SNP [dm6]	A	G	5.778e^-4	0.994	INTRON CG31690
3L	18136210	3L_18136210_SNP [dm3] 3L_18143110_SNP [dm6]	T	G	5.788e^-4	0.994	INTRON gk
3L	13191838	3L_13191838_SNP [dm3] 3L_13198738_SNP [dm6]	G	T	5.802e^-4	0.994	INTERGENIC
3R	7755333	3R_7755333_SNP [dm3] 3R_11929611_SNP [dm6]	G	A	5.806e^-4	0.994	INTRON Cad87A
3R	16888971	3R_16888971_SNP [dm3] 3R_21063249_SNP [dm6]	A	G	5.808e^-4	0.994	SYNONYMOUS_CODING Cortactin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24576857	3R_24576857_SNP [dm3] 3R_28751135_SNP [dm6]	C	A	5.836e^-4	0.994	NON_SYNONYMOUS_CODING CG10000
2R	12545658	2R_12545658_SNP [dm3] 2R_16658153_SNP [dm6]	A	G	5.852e^-4	0.994	INTRON Picot
X	17677264	X_17677264_SNP [dm3] X_17783231_SNP [dm6]	C	A	5.853e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	17308750	3R_17308750_SNP [dm3] 3R_21483028_SNP [dm6]	G	A	5.856e^-4	0.994	NON_SYNONYMOUS_CODING CG7922	TF binding site mE1_TFBS_sens
3L	7414473	3L_7414473_INS [dm3] 3L_7421373_INS [dm6]	T	TT	5.859e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_run
3L	7414485	3L_7414485_SNP [dm3] 3L_7421385_SNP [dm6]	T	A	5.859e^-4	0.994	INTERGENIC
3R	17941675	3R_17941675_SNP [dm3] 3R_22115953_SNP [dm6]	C	T	5.861e^-4	0.994	NON_SYNONYMOUS_CODING Ir94b DOWNSTREAM Ir94a
3R	17941697	3R_17941697_SNP [dm3] 3R_22115975_SNP [dm6]	A	G	5.861e^-4	0.994	SYNONYMOUS_CODING Ir94b DOWNSTREAM Ir94a
X	22047408	X_22047408_INS [dm3] X_22645572_INS [dm6]	C	CCCCTTAAACCGTATCGATA...	5.863e^-4	0.994	INTERGENIC
X	22048078	X_22048078_SNP [dm3] X_22646242_SNP [dm6]	C	T	5.863e^-4	0.994	INTERGENIC
X	22048417	X_22048417_DEL [dm3] X_22646581_DEL [dm6]	ACACATTGAAACCACGTTAA...	CT	5.863e^-4	0.994	INTERGENIC
X	2399570	X_2399570_SNP [dm3] X_2505537_SNP [dm6]	A	C	5.877e^-4	0.994	UTR_5_PRIME trol INTRON trol	TF binding site mE1_TFBS_cad
3R	17997831	3R_17997831_DEL [dm3] 3R_22172109_DEL [dm6]	GT	A	5.879e^-4	0.994	INTRON SKIP
3R	17997837	3R_17997837_SNP [dm3] 3R_22172115_SNP [dm6]	A	T	5.879e^-4	0.994	INTRON SKIP
X	6429334	X_6429334_SNP [dm3] X_6535301_SNP [dm6]	A	T	5.897e^-4	0.994	INTRON dx	TF binding site BDTNP1_TFBS_dl
2L	9093670	2L_9093670_SNP [dm3] 2L_9093670_SNP [dm6]	C	T	5.912e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	8849048	3L_8849048_SNP [dm3] 3L_8855948_SNP [dm6]	T	C	5.912e^-4	0.994	INTRON dally
2L	19616746	2L_19616746_SNP [dm3] 2L_19616746_SNP [dm6]	C	T	5.914e^-4	0.994	INTRON Lar
X	17971482	X_17971482_SNP [dm3] X_18077449_SNP [dm6]	G	A	5.918e^-4	0.994	INTRON Dhc16F
3L	6700824	3L_6700824_SNP [dm3] 3L_6707724_SNP [dm6]	G	A	5.921e^-4	0.994	UTR_5_PRIME CG8519 INTRON CG8519	TF binding site mE1_TFBS_HSA
3L	6701227	3L_6701227_DEL [dm3] 3L_6708127_DEL [dm6]	GA	T	5.921e^-4	0.994	INTRON CG8519
X	13749682	X_13749682_SNP [dm3] X_13855649_SNP [dm6]	A	G	5.921e^-4	0.994	SYNONYMOUS_CODING mamo	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21691157	3R_21691157_SNP [dm3] 3R_25865435_SNP [dm6]	T	G	5.933e^-4	0.994	INTRON CG5890
3L	1547794	3L_1547794_SNP [dm3] 3L_1547794_SNP [dm6]	A	C	5.949e^-4	0.994	UPSTREAM Cct1 INTRON Cct1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	9070748	2L_9070748_SNP [dm3] 2L_9070748_SNP [dm6]	A	C	5.952e^-4	0.994	UPSTREAM CR44483 INTRON CG31708
3L	1378797	3L_1378797_SNP [dm3] 3L_1378797_SNP [dm6]	A	G	5.980e^-4	0.994	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_cad
2L	1995740	2L_1995740_SNP [dm3] 2L_1995740_SNP [dm6]	C	T	5.985e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_sna
3R	17208884	3R_17208884_SNP [dm3] 3R_21383162_SNP [dm6]	A	C	5.989e^-4	0.994	INTERGENIC	regulatory region REDfly_CRMs
3L	5056602	3L_5056602_SNP [dm3] 3L_5056602_SNP [dm6]	G	A	5.990e^-4	0.994	INTRON Con
3L	5056610	3L_5056610_SNP [dm3] 3L_5056610_SNP [dm6]	C	A	5.990e^-4	0.994	INTRON Con
3R	25537625	3R_25537625_SNP [dm3] 3R_29711903_SNP [dm6]	T	A	5.995e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	12107693	2R_12107693_SNP [dm3] 2R_16220188_SNP [dm6]	T	G	5.996e^-4	0.994	UPSTREAM tRNA:CR30238 DOWNSTREAM tRNA:CR30239 & 1 other INTRON mrj	TF binding site BDTNP1_TFBS_dl
3R	11092649	3R_11092649_SNP [dm3] 3R_15266927_SNP [dm6]	A	C	5.997e^-4	0.994	NON_SYNONYMOUS_CODING CG14864 DOWNSTREAM Oscp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18133248	3L_18133248_DEL [dm3] 3L_18140148_DEL [dm6]	TTA	T	5.998e^-4	0.994	INTRON gk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	18133280	3L_18133280_SNP [dm3] 3L_18140180_SNP [dm6]	A	G	5.998e^-4	0.994	INTRON gk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	7459227	X_7459227_SNP [dm3] X_7565194_SNP [dm6]	C	A	5.998e^-4	0.994	INTERGENIC
2R	4603373	2R_4603373_SNP [dm3] 2R_8715868_SNP [dm6]	C	A	6.000e^-4	0.994	DOWNSTREAM PGRP-SC1b INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2L	3791243	2L_3791243_SNP [dm3] 2L_3791243_SNP [dm6]	G	C	6.004e^-4	0.994	INTRON CG3921
2L	15755244	2L_15755244_SNP [dm3] 2L_15755244_SNP [dm6]	A	G	6.008e^-4	0.994	SYNONYMOUS_CODING l_2_35Df DOWNSTREAM Gli	TF binding site mE1_TFBS_cad
3L	1919237	3L_1919237_DEL [dm3] 3L_1919237_DEL [dm6]	TTTGATTTCT	T	6.010e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	10054132	2L_10054132_SNP [dm3] 2L_10054132_SNP [dm6]	T	G	6.011e^-4	0.994	UPSTREAM Cpr31A DOWNSTREAM CR44875 INTERGENIC
2R	8447247	2R_8447247_SNP [dm3] 2R_12559742_SNP [dm6]	C	T	6.017e^-4	0.994	SYNONYMOUS_CODING fra
3L	11567725	3L_11567725_SNP [dm3] 3L_11574625_SNP [dm6]	G	A	6.019e^-4	0.994	START_GAINED CG33490 UTR_5_PRIME CG33490 DOWNSTREAM CG33489
3L	10482773	3L_10482773_SNP [dm3] 3L_10489673_SNP [dm6]	G	T	6.022e^-4	0.994	INTRON A2bp1
2R	11682796	2R_11682796_SNP [dm3] 2R_15795291_SNP [dm6]	T	A	6.032e^-4	0.994	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5807118	3R_5807118_SNP [dm3] 3R_9981396_SNP [dm6]	C	T	6.038e^-4	0.994	INTRON Glut4EF
2L	5124561	2L_5124561_SNP [dm3] 2L_5124561_SNP [dm6]	C	T	6.042e^-4	0.994	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19553965	X_19553965_SNP [dm3] X_19659932_SNP [dm6]	C	A	6.043e^-4	0.994	NON_SYNONYMOUS_CODING CG14223 DOWNSTREAM CG14215	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	21725984	2L_21725984_SNP [dm3] 2L_21725984_SNP [dm6]	G	T	6.053e^-4	0.994	INTRON CG31619
3L	18311211	3L_18311211_DEL [dm3] 3L_18318111_DEL [dm6]	CC	C	6.059e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	18311234	3L_18311234_INS [dm3] 3L_18318134_INS [dm6]	A	AA	6.059e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9972879	3R_9972879_SNP [dm3] 3R_14147157_SNP [dm6]	C	T	6.062e^-4	0.994	INTERGENIC
3R	2140690	3R_2140690_SNP [dm3] 3R_6314968_SNP [dm6]	A	G	6.072e^-4	0.994	UTR_5_PRIME Osi17 UPSTREAM Osi17	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	10483096	3L_10483096_SNP [dm3] 3L_10489996_SNP [dm6]	C	T	6.078e^-4	0.994	UPSTREAM S-Lap4 INTRON A2bp1
2L	7068798	2L_7068798_SNP [dm3] 2L_7068798_SNP [dm6]	T	C	6.083e^-4	0.994	SYNONYMOUS_CODING CG11289 DOWNSTREAM Pvf2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14992596	2R_14992596_SNP [dm3] 2R_19105091_SNP [dm6]	C	T	6.084e^-4	0.994	INTRON 5-HT1A
3R	19802709	3R_19802709_SNP [dm3] 3R_23976987_SNP [dm6]	T	A	6.098e^-4	0.994	INTRON CG31140	TF binding site mE1_TFBS_chinmo
2L	4917160	2L_4917160_SNP [dm3] 2L_4917160_SNP [dm6]	T	A	6.117e^-4	0.994	INTRON hoe1
3R	13043802	3R_13043802_SNP [dm3] 3R_17218080_SNP [dm6]	T	G	6.135e^-4	0.994	INTRON CG31262
3R	13043804	3R_13043804_SNP [dm3] 3R_17218082_SNP [dm6]	C	A	6.135e^-4	0.994	INTRON CG31262
3R	13043808	3R_13043808_SNP [dm3] 3R_17218086_SNP [dm6]	G	A	6.135e^-4	0.994	INTRON CG31262
2L	16528782	2L_16528782_SNP [dm3] 2L_16528782_SNP [dm6]	C	T	6.141e^-4	0.994	UPSTREAM mir-4943 DOWNSTREAM snoRNA:Me28S-C1237 INTRON CG5953
2L	3222013	2L_3222013_SNP [dm3] 2L_3222013_SNP [dm6]	A	C	6.151e^-4	0.994	INTERGENIC
X	20900204	X_20900204_SNP [dm3] X_21029177_SNP [dm6]	T	C	6.155e^-4	0.994	UTR_3_PRIME CG1529 UPSTREAM CG1532 DOWNSTREAM CG1529
X	20900440	X_20900440_SNP [dm3] X_21029413_SNP [dm6]	G	T	6.155e^-4	0.994	UTR_3_PRIME CG1529 DOWNSTREAM CG1529	transposable element FlyBase
2L	14744489	2L_14744489_DEL [dm3] 2L_14744489_DEL [dm6]	AA	A	6.164e^-4	0.994	DOWNSTREAM CG34166 & 2 others INTRON CG42681
2R	15577805	2R_15577805_SNP [dm3] 2R_19690300_SNP [dm6]	T	G	6.165e^-4	0.994	UPSTREAM CG15126 INTERGENIC
2L	4199070	2L_4199070_SNP [dm3] 2L_4199070_SNP [dm6]	T	A	6.168e^-4	0.994	UTR_3_PRIME ft UPSTREAM CG3714	TF binding site mE1_TFBS_cad
3L	10722020	3L_10722020_SNP [dm3] 3L_10728920_SNP [dm6]	G	A	6.190e^-4	0.994	INTERGENIC
3L	16987702	3L_16987702_SNP [dm3] 3L_16994602_SNP [dm6]	T	G	6.198e^-4	0.994	DOWNSTREAM CG3764 & 1 other INTERGENIC
3R	25193277	3R_25193277_SNP [dm3] 3R_29367555_SNP [dm6]	A	G	6.200e^-4	0.994	INTERGENIC
3R	5817318	3R_5817318_SNP [dm3] 3R_9991596_SNP [dm6]	T	C	6.203e^-4	0.994	UTR_3_PRIME Glut4EF
2R	14511758	2R_14511758_SNP [dm3] 2R_18624253_SNP [dm6]	A	G	6.211e^-4	0.994	SYNONYMOUS_CODING Atg7 UPSTREAM Sec6 INTRON Atg7	TF binding site mE1_TFBS_sens
2R	14511764	2R_14511764_SNP [dm3] 2R_18624259_SNP [dm6]	A	C	6.211e^-4	0.994	SYNONYMOUS_CODING Atg7 UPSTREAM Sec6 INTRON Atg7	TF binding site mE1_TFBS_sens
2R	1325042	2R_1325042_SNP [dm3] 2R_5437537_SNP [dm6]	C	A	6.227e^-4	0.994	INTRON laccase2	transposable element FlyBase
X	7291115	X_7291115_SNP [dm3] X_7397082_SNP [dm6]	G	A	6.241e^-4	0.994	INTRON CG1677 & 1 other
3R	17263323	3R_17263323_SNP [dm3] 3R_21437601_SNP [dm6]	A	T	6.246e^-4	0.994	UPSTREAM CR44089 INTERGENIC
X	11834299	X_11834299_INS [dm3] X_11940266_INS [dm6]	T	TGTT	6.253e^-4	0.994	INTRON cac
3R	21470095	3R_21470095_INS [dm3] 3R_25644373_INS [dm6]	T	TT	6.256e^-4	0.994	INTRON jigr1
3R	11858793	3R_11858793_INS [dm3] 3R_16033071_INS [dm6]	C	CTCACC	6.258e^-4	0.994	INTRON pnr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	7468802	3L_7468802_SNP [dm3] 3L_7475702_SNP [dm6]	C	T	6.260e^-4	0.994	INTRON CG43292
3L	11295489	3L_11295489_SNP [dm3] 3L_11302389_SNP [dm6]	T	C	6.264e^-4	0.994	INTERGENIC
2R	21080308	2R_21080308_SNP [dm3] 2R_25192785_SNP [dm6]	T	C	6.267e^-4	0.994	INTRON CG9380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5303669	3L_5303669_SNP [dm3] 3L_5310569_SNP [dm6]	C	T	6.280e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13779563	2R_13779563_SNP [dm3] 2R_17892058_SNP [dm6]	T	C	6.288e^-4	0.994	INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	13779641	2R_13779641_SNP [dm3] 2R_17892136_SNP [dm6]	T	A	6.288e^-4	0.994	INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	8575303	2L_8575303_SNP [dm3] 2L_8575303_SNP [dm6]	C	A	6.288e^-4	0.994	INTRON Sema-1a
3R	15813035	3R_15813035_SNP [dm3] 3R_19987313_SNP [dm6]	G	A	6.293e^-4	0.994	INTRON Hs6st
3L	11478334	3L_11478334_SNP [dm3] 3L_11485234_SNP [dm6]	A	G	6.294e^-4	0.994	INTERGENIC
3L	3002509	3L_3002509_DEL [dm3] 3L_3002509_DEL [dm6]	ATGG	T	6.295e^-4	0.994	UPSTREAM FMRFaR INTRON FMRFaR
3L	5196766	3L_5196766_SNP [dm3] 3L_5203666_SNP [dm6]	T	G	6.296e^-4	0.994	INTRON shep
2L	11707962	2L_11707962_SNP [dm3] 2L_11707962_SNP [dm6]	C	A	6.319e^-4	0.994	INTERGENIC
2L	11981073	2L_11981073_SNP [dm3] 2L_11981073_SNP [dm6]	T	G	6.324e^-4	0.994	UPSTREAM CG16965 INTERGENIC
2R	14354218	2R_14354218_SNP [dm3] 2R_18466713_SNP [dm6]	T	C	6.334e^-4	0.994	INTRON CG30116	TF binding site mE1_TFBS_chinmo
X	11158282	X_11158282_SNP [dm3] X_11264249_SNP [dm6]	A	C	6.344e^-4	0.994	INTRON CG44422
3R	10432308	3R_10432308_SNP [dm3] 3R_14606586_SNP [dm6]	G	A	6.361e^-4	0.994	SYNONYMOUS_CODING stumps
3R	24896639	3R_24896639_SNP [dm3] 3R_29070917_SNP [dm6]	C	G	6.367e^-4	0.994	INTRON CG11873	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	18786396	2R_18786396_SNP [dm3] 2R_22898873_SNP [dm6]	C	A	6.369e^-4	0.994	INTRON nahoda
3L	2105320	3L_2105320_SNP [dm3] 3L_2105320_SNP [dm6]	T	C	6.377e^-4	0.994	SYNONYMOUS_CODING sls	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	5322113	3R_5322113_SNP [dm3] 3R_9496391_SNP [dm6]	C	T	6.382e^-4	0.994	SYNONYMOUS_CODING CG8147 DOWNSTREAM RhoL	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	3014595	2L_3014595_SNP [dm3] 2L_3014595_SNP [dm6]	C	T	6.392e^-4	0.994	INTRON CG17265
X	6429387	X_6429387_SNP [dm3] X_6535354_SNP [dm6]	G	A	6.393e^-4	0.994	INTRON dx	TF binding site BDTNP1_TFBS_dl
X	6429417	X_6429417_SNP [dm3] X_6535384_SNP [dm6]	T	C	6.393e^-4	0.994	INTRON dx	TF binding site BDTNP1_TFBS_dl
3L	11890951	3L_11890951_SNP [dm3] 3L_11897851_SNP [dm6]	C	G	6.410e^-4	0.994	UPSTREAM CR43624 INTRON CG44837
2L	4164035	2L_4164035_SNP [dm3] 2L_4164035_SNP [dm6]	A	C	6.420e^-4	0.994	DOWNSTREAM Or24a INTERGENIC
3L	13358936	3L_13358936_SNP [dm3] 3L_13365836_SNP [dm6]	A	G	6.427e^-4	0.994	INTERGENIC
2L	7056223	2L_7056223_SNP [dm3] 2L_7056223_SNP [dm6]	C	A	6.428e^-4	0.994	UPSTREAM Mnn1 DOWNSTREAM milt INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_zfh1
2L	9894967	2L_9894967_SNP [dm3] 2L_9894967_SNP [dm6]	G	A	6.445e^-4	0.994	UPSTREAM snoRNA:U14:30Eb & 4 others INTRON Uhg2 EXON Uhg2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	11221645	3L_11221645_SNP [dm3] 3L_11228545_SNP [dm6]	C	T	6.445e^-4	0.994	UTR_3_PRIME CG42671 INTRON CG42671
3R	25125892	3R_25125892_SNP [dm3] 3R_29300170_SNP [dm6]	A	T	6.472e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	10598902	2R_10598902_SNP [dm3] 2R_14711397_SNP [dm6]	G	T	6.474e^-4	0.994	INTRON mspo
3L	18126644	3L_18126644_SNP [dm3] 3L_18133544_SNP [dm6]	T	G	6.489e^-4	0.994	UPSTREAM Cyp312a1 INTERGENIC
2L	7056300	2L_7056300_SNP [dm3] 2L_7056300_SNP [dm6]	C	T	6.497e^-4	0.994	UPSTREAM Mnn1 DOWNSTREAM milt INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_zfh1
3R	10711285	3R_10711285_SNP [dm3] 3R_14885563_SNP [dm6]	A	C	6.516e^-4	0.994	UPSTREAM CG33331 & 1 other INTRON Rrp6	TF binding site BDTNP1_TFBS_Med mE1_TFBS_sens
3R	25520510	3R_25520510_SNP [dm3] 3R_29694788_SNP [dm6]	T	A	6.530e^-4	0.994	INTRON dmrt99B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd
3R	25520667	3R_25520667_SNP [dm3] 3R_29694945_SNP [dm6]	C	T	6.530e^-4	0.994	INTRON dmrt99B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_sens
2L	9269081	2L_9269081_SNP [dm3] 2L_9269081_SNP [dm6]	C	G	6.541e^-4	0.994	INTRON Ggamma30A
2L	9269083	2L_9269083_INS [dm3] 2L_9269083_INS [dm6]	A	AAAGTTTC	6.541e^-4	0.994	INTRON Ggamma30A
3R	15298313	3R_15298313_SNP [dm3] 3R_19472591_SNP [dm6]	G	T	6.543e^-4	0.994	INTRON Dys	TF binding site mE1_TFBS_cad
2R	9646495	2R_9646495_SNP [dm3] 2R_13758990_SNP [dm6]	C	T	6.550e^-4	0.994	DOWNSTREAM CG6280 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	18591615	2R_18591615_SNP [dm3] 2R_22704110_SNP [dm6]	G	A	6.552e^-4	0.994	SYNONYMOUS_CODING CG30259 UPSTREAM Obp58b DOWNSTREAM Obp59a
2L	10102232	2L_10102232_SNP [dm3] 2L_10102232_SNP [dm6]	G	C	6.562e^-4	0.994	INTRON CG44153 & 1 other
2R	18024889	2R_18024889_SNP [dm3] 2R_22137384_SNP [dm6]	T	G	6.576e^-4	0.994	UPSTREAM a INTRON a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3R	17816908	3R_17816908_DEL [dm3] 3R_21991186_DEL [dm6]	AA	A	6.579e^-4	0.994	INTRON Eip93F
3L	18311560	3L_18311560_SNP [dm3] 3L_18318460_SNP [dm6]	A	G	6.604e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6719062	3L_6719062_DEL [dm3] 3L_6725962_DEL [dm6]	TGA	T	6.607e^-4	0.994	UPSTREAM CR44523 INTERGENIC
3R	27285456	3R_27285456_SNP [dm3] 3R_31459734_SNP [dm6]	C	G	6.616e^-4	0.994	UTR_5_PRIME lox DOWNSTREAM CG11334	TF binding site mE1_TFBS_sens
2R	18790118	2R_18790118_SNP [dm3] 2R_22902595_SNP [dm6]	A	T	6.626e^-4	0.994	INTRON nahoda
2R	18790302	2R_18790302_SNP [dm3] 2R_22902779_SNP [dm6]	C	T	6.626e^-4	0.994	INTRON nahoda
2R	18790304	2R_18790304_SNP [dm3] 2R_22902781_SNP [dm6]	C	T	6.626e^-4	0.994	INTRON nahoda
2R	18790307	2R_18790307_INS [dm3] 2R_22902784_INS [dm6]	T	TCTATAG	6.626e^-4	0.994	INTRON nahoda
3L	14977835	3L_14977835_SNP [dm3] 3L_14984735_SNP [dm6]	G	T	6.634e^-4	0.994	UPSTREAM mnd DOWNSTREAM CG5114 INTERGENIC
2L	14203767	2L_14203767_SNP [dm3] 2L_14203767_SNP [dm6]	G	A	6.634e^-4	0.994	INTRON Dyrk2
2R	18639949	2R_18639949_SNP [dm3] 2R_22752444_SNP [dm6]	T	G	6.636e^-4	0.994	INTRON CG42260
3L	8084501	3L_8084501_SNP [dm3] 3L_8091401_SNP [dm6]	A	G	6.640e^-4	0.994	SYNONYMOUS_CODING CG7565 INTRON Ect4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	2781724	2L_2781724_SNP [dm3] 2L_2781724_SNP [dm6]	T	C	6.667e^-4	0.994	UTR_3_PRIME Syt1
3L	16987178	3L_16987178_SNP [dm3] 3L_16994078_SNP [dm6]	G	A	6.670e^-4	0.994	SYNONYMOUS_CODING Exn DOWNSTREAM CG3764	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5445484	X_5445484_SNP [dm3] X_5551451_SNP [dm6]	G	A	6.686e^-4	0.994	INTRON Vsx2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	13243771	3L_13243771_SNP [dm3] 3L_13250671_SNP [dm6]	T	A	6.689e^-4	0.994	INTRON caps	TF binding site mE1_TFBS_h mE1_TFBS_HSA
X	3735290	X_3735290_SNP [dm3] X_3841257_SNP [dm6]	A	C	6.706e^-4	0.994	INTRON ec	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
X	5501188	X_5501188_SNP [dm3] X_5607155_SNP [dm6]	G	A	6.712e^-4	0.994	INTRON Vsx1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	8742627	3L_8742627_SNP [dm3] 3L_8749527_SNP [dm6]	A	G	6.719e^-4	0.994	SYNONYMOUS_CODING CG13306	TF binding site mE1_TFBS_bab1
2L	8398294	2L_8398294_SNP [dm3] 2L_8398294_SNP [dm6]	T	A	6.723e^-4	0.994	UPSTREAM CG13386 DOWNSTREAM CG13385 INTERGENIC
3R	17817011	3R_17817011_SNP [dm3] 3R_21991289_SNP [dm6]	T	G	6.755e^-4	0.994	INTRON Eip93F
2R	9413472	2R_9413472_SNP [dm3] 2R_13525967_SNP [dm6]	G	A	6.762e^-4	0.994	UTR_3_PRIME CG13332 INTRON Vmat
2R	11963372	2R_11963372_INS [dm3] 2R_16075867_INS [dm6]	G	GTCGTG	6.765e^-4	0.994	INTERGENIC
3L	5887121	3L_5887121_SNP [dm3] 3L_5894021_SNP [dm6]	A	C	6.771e^-4	0.994	INTERGENIC
X	656288	X_656288_SNP [dm3] X_762255_SNP [dm6]	G	T	6.779e^-4	0.994	DOWNSTREAM RpL22 & 3 others EXON CR44965
3L	6767240	3L_6767240_SNP [dm3] 3L_6774140_SNP [dm6]	A	C	6.807e^-4	0.994	INTERGENIC	regulatory region REDfly_CRMs
2R	20120883	2R_20120883_SNP [dm3] 2R_24233360_SNP [dm6]	A	G	6.810e^-4	0.994	INTERGENIC
3R	18191542	3R_18191542_SNP [dm3] 3R_22365820_SNP [dm6]	A	G	6.810e^-4	0.994	UTR_5_PRIME CG5382 DOWNSTREAM CG5380	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	20096993	2R_20096993_SNP [dm3] 2R_24209470_SNP [dm6]	T	C	6.813e^-4	0.994	INTERGENIC
3L	13371171	3L_13371171_SNP [dm3] 3L_13378071_SNP [dm6]	T	C	6.823e^-4	0.994	UPSTREAM SNCF INTRON CG14111	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15033073	2L_15033073_SNP [dm3] 2L_15033073_SNP [dm6]	G	T	6.828e^-4	0.994	UTR_3_PRIME GABA-B-R1
2L	15741269	2L_15741269_SNP [dm3] 2L_15741269_SNP [dm6]	A	T	6.834e^-4	0.994	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9251363	3L_9251363_SNP [dm3] 3L_9258263_SNP [dm6]	T	A	6.841e^-4	0.994	INTRON GluRIB
3L	9251364	3L_9251364_INS [dm3] 3L_9258264_INS [dm6]	G	GA	6.841e^-4	0.994	INTRON GluRIB
3L	9251371	3L_9251371_SNP [dm3] 3L_9258271_SNP [dm6]	G	A	6.841e^-4	0.994	INTRON GluRIB
2L	5072192	2L_5072192_DEL [dm3] 2L_5072192_DEL [dm6]	TT	T	6.847e^-4	0.994	UTR_3_PRIME pgant5 DOWNSTREAM RpL37A
3R	25808987	3R_25808987_SNP [dm3] 3R_29983265_SNP [dm6]	G	A	6.860e^-4	0.994	UPSTREAM CG7896 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	9972845	3R_9972845_SNP [dm3] 3R_14147123_SNP [dm6]	A	C	6.860e^-4	0.994	INTERGENIC
X	20641415	X_20641415_SNP [dm3] X_20770388_SNP [dm6]	T	A	6.861e^-4	0.994	UTR_3_PRIME shakB DOWNSTREAM shakB
3R	9973092	3R_9973092_SNP [dm3] 3R_14147370_SNP [dm6]	A	T	6.867e^-4	0.994	INTERGENIC
3L	11466594	3L_11466594_SNP [dm3] 3L_11473494_SNP [dm6]	A	G	6.876e^-4	0.994	SYNONYMOUS_CODING Vha16-3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7316701	3L_7316701_SNP [dm3] 3L_7323601_SNP [dm6]	C	A	6.885e^-4	0.994	UPSTREAM Rint1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA
3L	7316725	3L_7316725_SNP [dm3] 3L_7323625_SNP [dm6]	A	T	6.885e^-4	0.994	UTR_5_PRIME Rint1 UPSTREAM RhoGEF4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	9940461	3L_9940461_SNP [dm3] 3L_9947361_SNP [dm6]	A	T	6.887e^-4	0.994	INTRON CG34356
3R	13789143	3R_13789143_SNP [dm3] 3R_17963421_SNP [dm6]	G	A	6.903e^-4	0.994	INTRON cpo
3L	3842259	3L_3842259_SNP [dm3] 3L_3842259_SNP [dm6]	G	T	6.909e^-4	0.994	UTR_3_PRIME enc
2R	20094781	2R_20094781_SNP [dm3] 2R_24207258_SNP [dm6]	A	T	6.911e^-4	0.994	UPSTREAM CG11406 INTRON CG11406
3R	6517170	3R_6517170_SNP [dm3] 3R_10691448_SNP [dm6]	G	A	6.912e^-4	0.994	SPLICE_SITE_REGION Skeletor SYNONYMOUS_CODING Skeletor UTR_5_PRIME Skeletor DOWNSTREAM Skeletor
3L	4198992	3L_4198992_SNP [dm3] 3L_4198992_SNP [dm6]	T	G	6.917e^-4	0.994	SPLICE_SITE_REGION CG43367 INTRON CG43367
3L	4199001	3L_4199001_SNP [dm3] 3L_4199001_SNP [dm6]	T	C	6.917e^-4	0.994	SYNONYMOUS_CODING CG43367
2L	13114560	2L_13114560_SNP [dm3] 2L_13114560_SNP [dm6]	C	A	6.923e^-4	0.994	INTERGENIC
2L	13114600	2L_13114600_SNP [dm3] 2L_13114600_SNP [dm6]	G	A	6.923e^-4	0.994	INTERGENIC
X	8340208	X_8340208_SNP [dm3] X_8446175_SNP [dm6]	A	G	6.931e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13948550	2R_13948550_SNP [dm3] 2R_18061045_SNP [dm6]	G	T	6.940e^-4	0.994	INTERGENIC
2L	1027462	2L_1027462_SNP [dm3] 2L_1027462_SNP [dm6]	C	G	6.949e^-4	0.994	UPSTREAM CG4375 INTRON IA-2
3R	26602043	3R_26602043_SNP [dm3] 3R_30776321_SNP [dm6]	A	G	6.952e^-4	0.994	INTRON zfh1	TF binding site BDTNP1_TFBS_dl
X	13111473	X_13111473_SNP [dm3] X_13217440_SNP [dm6]	C	A	6.969e^-4	0.994	SYNONYMOUS_CODING mew	TF binding site mE1_TFBS_sens
2L	1999704	2L_1999704_SNP [dm3] 2L_1999704_SNP [dm6]	T	A	6.975e^-4	0.994	UPSTREAM CR43464 INTRON CG33543
2L	12773852	2L_12773852_SNP [dm3] 2L_12773852_SNP [dm6]	A	C	6.985e^-4	0.994	INTERGENIC
3L	11744740	3L_11744740_SNP [dm3] 3L_11751640_SNP [dm6]	T	C	6.985e^-4	0.994	SYNONYMOUS_CODING Gr68a INTRON CG6024	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	25065695	3R_25065695_SNP [dm3] 3R_29239973_SNP [dm6]	G	A	6.986e^-4	0.994	SPLICE_SITE_REGION CG31427 UTR_5_PRIME CG31427 DOWNSTREAM CG31445
3R	27535032	3R_27535032_SNP [dm3] 3R_31709310_SNP [dm6]	G	C	6.991e^-4	0.994	UPSTREAM CG42693 EXON CR34046	TF binding site mE1_TFBS_Trl
3R	10214041	3R_10214041_SNP [dm3] 3R_14388319_SNP [dm6]	C	A	7.007e^-4	0.994	INTERGENIC
2L	16362395	2L_16362395_DEL [dm3] 2L_16362395_DEL [dm6]	ACTAAC	A	7.013e^-4	0.994	INTERGENIC
2L	16362402	2L_16362402_SNP [dm3] 2L_16362402_SNP [dm6]	A	T	7.013e^-4	0.994	INTERGENIC
2L	7056047	2L_7056047_SNP [dm3] 2L_7056047_SNP [dm6]	T	A	7.016e^-4	0.994	UPSTREAM Mnn1 DOWNSTREAM milt INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	5266902	2L_5266902_SNP [dm3] 2L_5266902_SNP [dm6]	T	A	7.033e^-4	0.994	SPLICE_SITE_REGION Cyp4ac2 INTRON tkv & 1 other
3R	5804794	3R_5804794_SNP [dm3] 3R_9979072_SNP [dm6]	C	A	7.034e^-4	0.994	INTRON Glut4EF	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	8374642	3R_8374642_SNP [dm3] 3R_12548920_SNP [dm6]	G	A	7.039e^-4	0.994	UPSTREAM Octbeta3R INTERGENIC
2L	5879825	2L_5879825_SNP [dm3] 2L_5879825_SNP [dm6]	T	C	7.039e^-4	0.994	UPSTREAM rau INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	17281412	3R_17281412_SNP [dm3] 3R_21455690_SNP [dm6]	C	A	7.040e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8304092	2L_8304092_SNP [dm3] 2L_8304092_SNP [dm6]	G	A	7.040e^-4	0.994	SYNONYMOUS_CODING Scgalpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2165658	2L_2165658_SNP [dm3] 2L_2165658_SNP [dm6]	G	A	7.047e^-4	0.994	INTRON aop	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	2784145	2L_2784145_INS [dm3] 2L_2784145_INS [dm6]	A	AAA	7.047e^-4	0.994	UTR_3_PRIME Syt1 INTRON Syt1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7458905	X_7458905_SNP [dm3] X_7564872_SNP [dm6]	A	T	7.048e^-4	0.994	INTERGENIC
2L	2858256	2L_2858256_SNP [dm3] 2L_2858256_SNP [dm6]	C	T	7.055e^-4	0.994	INTRON CG2991	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	19798357	2L_19798357_SNP [dm3] 2L_19798357_SNP [dm6]	A	T	7.066e^-4	0.994	INTRON sick
2L	3526564	2L_3526564_SNP [dm3] 2L_3526564_SNP [dm6]	C	T	7.067e^-4	0.994	SYNONYMOUS_CODING CG8852 DOWNSTREAM Spindly	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	1345699	2R_1345699_SNP [dm3] 2R_5458194_SNP [dm6]	A	G	7.077e^-4	0.994	INTERGENIC	transposable element FlyBase
2R	12115432	2R_12115432_SNP [dm3] 2R_16227927_SNP [dm6]	C	T	7.086e^-4	0.994	SYNONYMOUS_CODING Tsf3 INTRON CG15706	TF binding site mE1_TFBS_chinmo
3R	24647337	3R_24647337_SNP [dm3] 3R_28821615_SNP [dm6]	T	C	7.101e^-4	0.994	SYNONYMOUS_CODING CG1647	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	1345711	2R_1345711_SNP [dm3] 2R_5458206_SNP [dm6]	C	T	7.103e^-4	0.994	INTERGENIC	transposable element FlyBase
2L	10749130	2L_10749130_SNP [dm3] 2L_10749130_SNP [dm6]	C	G	7.106e^-4	0.994	INTRON CG17124
3R	5435240	3R_5435240_SNP [dm3] 3R_9609518_SNP [dm6]	T	C	7.106e^-4	0.994	INTRON CG8312
3R	21418708	3R_21418708_SNP [dm3] 3R_25592986_SNP [dm6]	G	A	7.116e^-4	0.994	UTR_3_PRIME ymp INTRON msi & 1 other
3R	10460284	3R_10460284_SNP [dm3] 3R_14634562_SNP [dm6]	A	G	7.124e^-4	0.994	INTRON CG7886 & 1 other	TF binding site mE1_TFBS_inv
3R	11134777	3R_11134777_SNP [dm3] 3R_15309055_SNP [dm6]	C	A	7.132e^-4	0.994	DOWNSTREAM Tm1 INTERGENIC
X	15445701	X_15445701_SNP [dm3] X_15551668_SNP [dm6]	T	G	7.147e^-4	0.994	INTRON Ac13E	TF binding site mE1_TFBS_Kr
2L	16529598	2L_16529598_SNP [dm3] 2L_16529598_SNP [dm6]	T	A	7.155e^-4	0.994	UPSTREAM snoRNA:Me28S-C1237 INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc
2R	9239379	2R_9239379_DEL [dm3] 2R_13351874_DEL [dm6]	GG	G	7.156e^-4	0.994	INTRON CR44206	TF binding site mE1_TFBS_chinmo
3L	5196850	3L_5196850_SNP [dm3] 3L_5203750_SNP [dm6]	T	G	7.167e^-4	0.994	INTRON shep
3L	5196946	3L_5196946_SNP [dm3] 3L_5203846_SNP [dm6]	A	G	7.167e^-4	0.994	INTRON shep
3L	5196966	3L_5196966_SNP [dm3] 3L_5203866_SNP [dm6]	T	A	7.167e^-4	0.994	INTRON shep
3L	5196991	3L_5196991_SNP [dm3] 3L_5203891_SNP [dm6]	G	A	7.167e^-4	0.994	INTRON shep
3L	8957002	3L_8957002_SNP [dm3] 3L_8963902_SNP [dm6]	T	G	7.171e^-4	0.994	SYNONYMOUS_CODING CG5660	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	13087999	2L_13087999_SNP [dm3] 2L_13087999_SNP [dm6]	A	G	7.183e^-4	0.994	INTERGENIC
3R	18990339	3R_18990339_SNP [dm3] 3R_23164617_SNP [dm6]	A	C	7.186e^-4	0.994	INTERGENIC
3L	16987471	3L_16987471_SNP [dm3] 3L_16994371_SNP [dm6]	A	T	7.195e^-4	0.994	UTR_3_PRIME Exn DOWNSTREAM CG3764	TF binding site BDTNP1_TFBS_da

Missing results

By genomic position
Variant impact
Gene name

pc_CN_Hobo_HC phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results