DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.692e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2184 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	3798326	X_3798326_SNP [dm3] X_3904293_SNP [dm6]	T	C	4.525e^-7	0.776	SYNONYMOUS_CODING CG42541
3L	13057520	3L_13057520_SNP [dm3] 3L_13064420_SNP [dm6]	G	A	1.833e^-6	0.776	DOWNSTREAM CG34429 INTERGENIC
2R	10616651	2R_10616651_SNP [dm3] 2R_14729146_SNP [dm6]	T	A	2.620e^-6	0.776	INTERGENIC
2L	19824495	2L_19824495_SNP [dm3] 2L_19824495_SNP [dm6]	C	A	3.930e^-6	0.776	INTRON sick
3R	23652339	3R_23652339_SNP [dm3] 3R_27826617_SNP [dm6]	A	G	4.534e^-6	0.776	INTRON CG34353	TF binding site BDTNP1_TFBS_da
3R	24273489	3R_24273489_SNP [dm3] 3R_28447767_SNP [dm6]	G	A	5.899e^-6	0.776	INTRON beat-VI
3L	2530988	3L_2530988_SNP [dm3] 3L_2530988_SNP [dm6]	A	T	5.924e^-6	0.776	INTRON Spn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	16996208	2L_16996208_SNP [dm3] 2L_16996208_SNP [dm6]	T	C	6.251e^-6	0.776	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	8354045	3R_8354045_SNP [dm3] 3R_12528323_SNP [dm6]	C	T	6.828e^-6	0.776	INTRON Octbeta3R & 1 other
X	5085856	X_5085856_INS [dm3] X_5191823_INS [dm6]	T	TC	9.399e^-6	0.776	INTRON rg & 1 other
2L	16874529	2L_16874529_SNP [dm3] 2L_16874529_SNP [dm6]	T	C	1.021e^-5	0.776	INTRON CR31781
2L	16874546	2L_16874546_SNP [dm3] 2L_16874546_SNP [dm6]	T	A	1.021e^-5	0.776	INTRON CR31781
3R	22463417	3R_22463417_DEL [dm3] 3R_26637695_DEL [dm6]	TTAGAAGC	T	1.045e^-5	0.776	DOWNSTREAM TwdlS INTERGENIC
3L	10478152	3L_10478152_SNP [dm3] 3L_10485052_SNP [dm6]	C	G	1.076e^-5	0.776	INTRON A2bp1
3L	3973912	3L_3973912_SNP [dm3] 3L_3973912_SNP [dm6]	G	A	1.076e^-5	0.776	DOWNSTREAM CG43915 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23517865	3R_23517865_INS [dm3] 3R_27692143_INS [dm6]	G	GG	1.176e^-5	0.776	UTR_3_PRIME CG12880	TF binding site mE1_TFBS_chinmo
3R	22463502	3R_22463502_SNP [dm3] 3R_26637780_SNP [dm6]	T	A	1.213e^-5	0.776	DOWNSTREAM TwdlS INTERGENIC
3R	25070245	3R_25070245_SNP [dm3] 3R_29244523_SNP [dm6]	A	G	1.320e^-5	0.776	UPSTREAM CG31445 DOWNSTREAM SP1029 INTRON CG31445
3R	23531183	3R_23531183_SNP [dm3] 3R_27705461_SNP [dm6]	C	T	1.323e^-5	0.776	SPLICE_SITE_REGION CG12428 INTRON CG12428	TF binding site mE1_TFBS_chinmo
3L	5410078	3L_5410078_SNP [dm3] 3L_5416978_SNP [dm6]	G	A	1.324e^-5	0.776	INTERGENIC
2L	16996126	2L_16996126_SNP [dm3] 2L_16996126_SNP [dm6]	T	G	1.376e^-5	0.776	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	11620215	2L_11620215_SNP [dm3] 2L_11620215_SNP [dm6]	C	T	1.385e^-5	0.776	INTRON kek2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	2530907	3L_2530907_SNP [dm3] 3L_2530907_SNP [dm6]	A	T	1.477e^-5	0.776	INTRON Spn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	16874502	2L_16874502_SNP [dm3] 2L_16874502_SNP [dm6]	A	T	1.498e^-5	0.776	INTRON CR31781
2L	16874540	2L_16874540_SNP [dm3] 2L_16874540_SNP [dm6]	C	T	1.498e^-5	0.776	INTRON CR31781
3R	2782332	3R_2782332_SNP [dm3] 3R_6956610_SNP [dm6]	G	T	1.505e^-5	0.776	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3520579	3L_3520579_SNP [dm3] 3L_3520579_SNP [dm6]	T	G	1.597e^-5	0.776	INTRON Eip63E
3R	22463426	3R_22463426_SNP [dm3] 3R_26637704_SNP [dm6]	G	T	1.651e^-5	0.776	DOWNSTREAM TwdlS INTERGENIC
3R	22463427	3R_22463427_SNP [dm3] 3R_26637705_SNP [dm6]	A	C	1.651e^-5	0.776	DOWNSTREAM TwdlS INTERGENIC
3R	22463449	3R_22463449_SNP [dm3] 3R_26637727_SNP [dm6]	G	T	1.651e^-5	0.776	DOWNSTREAM TwdlS INTERGENIC
2R	19505830	2R_19505830_SNP [dm3] 2R_23618307_SNP [dm6]	G	T	1.909e^-5	0.776	INTERGENIC
3L	1395772	3L_1395772_SNP [dm3] 3L_1395772_SNP [dm6]	T	A	1.925e^-5	0.776	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6458194	3R_6458194_SNP [dm3] 3R_10632472_SNP [dm6]	T	C	1.951e^-5	0.776	INTRON hth	TF binding site mE1_TFBS_cad
2L	16874536	2L_16874536_SNP [dm3] 2L_16874536_SNP [dm6]	G	T	1.991e^-5	0.776	INTRON CR31781
3R	22463461	3R_22463461_SNP [dm3] 3R_26637739_SNP [dm6]	C	A	2.064e^-5	0.776	DOWNSTREAM TwdlS INTERGENIC
2L	11784311	2L_11784311_SNP [dm3] 2L_11784311_SNP [dm6]	G	A	2.181e^-5	0.776	INTERGENIC
3R	22463478	3R_22463478_INS [dm3] 3R_26637756_INS [dm6]	T	TTTCA	2.268e^-5	0.776	DOWNSTREAM TwdlS INTERGENIC
3L	3520566	3L_3520566_SNP [dm3] 3L_3520566_SNP [dm6]	T	A	2.633e^-5	0.776	INTRON Eip63E
3R	25609102	3R_25609102_SNP [dm3] 3R_29783380_SNP [dm6]	T	C	2.736e^-5	0.776	INTRON kay	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	15930371	2L_15930371_SNP [dm3] 2L_15930371_SNP [dm6]	C	A	2.866e^-5	0.776	INTRON beat-Ib
2L	15930381	2L_15930381_SNP [dm3] 2L_15930381_SNP [dm6]	C	G	2.866e^-5	0.776	INTRON beat-Ib
X	3741039	X_3741039_SNP [dm3] X_3847006_SNP [dm6]	A	C	2.899e^-5	0.776	INTRON ec	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17438999	2R_17438999_SNP [dm3] 2R_21551494_SNP [dm6]	G	A	2.953e^-5	0.776	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	16935782	2L_16935782_SNP [dm3] 2L_16935782_SNP [dm6]	C	T	2.964e^-5	0.776	INTERGENIC
2L	11896894	2L_11896894_SNP [dm3] 2L_11896894_SNP [dm6]	A	C	2.967e^-5	0.776	UPSTREAM Pde1c INTRON Pde1c
3L	10478014	3L_10478014_SNP [dm3] 3L_10484914_SNP [dm6]	C	T	2.967e^-5	0.776	INTRON A2bp1
2L	20879854	2L_20879854_SNP [dm3] 2L_20879854_SNP [dm6]	A	G	3.001e^-5	0.776	INTRON sky & 1 other
2L	20419019	2L_20419019_SNP [dm3] 2L_20419019_SNP [dm6]	G	A	3.076e^-5	0.776	UPSTREAM snoRNA:Psi18S-525d & 5 others DOWNSTREAM snoRNA:Psi18S-525a & 3 others INTRON Arpc2 EXON snoRNA:Psi18S-640b	TF binding site mE1_TFBS_zfh1
2L	16996242	2L_16996242_SNP [dm3] 2L_16996242_SNP [dm6]	T	C	3.137e^-5	0.776	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	10478277	3L_10478277_SNP [dm3] 3L_10485177_SNP [dm6]	G	A	3.235e^-5	0.776	INTRON A2bp1
2L	17006672	2L_17006672_SNP [dm3] 2L_17006672_SNP [dm6]	A	G	3.250e^-5	0.776	INTERGENIC
3L	5053262	3L_5053262_SNP [dm3] 3L_5053262_SNP [dm6]	G	A	3.390e^-5	0.776	INTRON Con
3R	23526478	3R_23526478_SNP [dm3] 3R_27700756_SNP [dm6]	A	G	3.497e^-5	0.776	NON_SYNONYMOUS_CODING btz UPSTREAM ALiX	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2L	17338174	2L_17338174_SNP [dm3] 2L_17338174_SNP [dm6]	G	A	3.615e^-5	0.776	INTERGENIC
2L	17338212	2L_17338212_SNP [dm3] 2L_17338212_SNP [dm6]	T	C	3.615e^-5	0.776	INTERGENIC
2L	19816702	2L_19816702_SNP [dm3] 2L_19816702_SNP [dm6]	G	A	3.671e^-5	0.776	UPSTREAM snRNA:U2:38ABa DOWNSTREAM snRNA:U5:38ABb INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	17009847	3R_17009847_SNP [dm3] 3R_21184125_SNP [dm6]	A	T	3.835e^-5	0.776	INTRON SNF4Agamma	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	12643551	2L_12643551_SNP [dm3] 2L_12643551_SNP [dm6]	T	C	3.893e^-5	0.776	INTRON Ref2
X	3800268	X_3800268_SNP [dm3] X_3906235_SNP [dm6]	G	A	3.907e^-5	0.776	SYNONYMOUS_CODING CG42541	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sbb
2L	16934432	2L_16934432_SNP [dm3] 2L_16934432_SNP [dm6]	C	T	4.061e^-5	0.776	INTERGENIC
2L	16934446	2L_16934446_SNP [dm3] 2L_16934446_SNP [dm6]	A	G	4.061e^-5	0.776	INTERGENIC
3L	3520578	3L_3520578_SNP [dm3] 3L_3520578_SNP [dm6]	T	C	4.112e^-5	0.776	INTRON Eip63E
2L	16879587	2L_16879587_SNP [dm3] 2L_16879587_SNP [dm6]	C	A	4.147e^-5	0.776	SYNONYMOUS_CODING CG34313 UTR_5_PRIME CG31743 UPSTREAM CG32832	TF binding site BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	8512019	2R_8512019_SNP [dm3] 2R_12624514_SNP [dm6]	G	C	4.169e^-5	0.776	INTRON CG30054
3R	8353814	3R_8353814_SNP [dm3] 3R_12528092_SNP [dm6]	C	T	4.205e^-5	0.776	INTRON Octbeta3R & 1 other
3L	15457936	3L_15457936_SNP [dm3] 3L_15464836_SNP [dm6]	G	T	4.584e^-5	0.776	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1177759	3L_1177759_SNP [dm3] 3L_1177759_SNP [dm6]	C	T	4.623e^-5	0.776	UPSTREAM bab2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	6480607	3R_6480607_SNP [dm3] 3R_10654885_SNP [dm6]	T	C	4.637e^-5	0.776	INTERGENIC
3L	2783449	3L_2783449_SNP [dm3] 3L_2783449_SNP [dm6]	G	A	4.646e^-5	0.776	SYNONYMOUS_CODING pgant6	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	5606995	2R_5606995_SNP [dm3] 2R_9719490_SNP [dm6]	A	C	4.679e^-5	0.776	NON_SYNONYMOUS_CODING sqa
2L	4340696	2L_4340696_SNP [dm3] 2L_4340696_SNP [dm6]	T	C	4.844e^-5	0.776	INTRON Atet
2R	11630397	2R_11630397_SNP [dm3] 2R_15742892_SNP [dm6]	C	G	4.895e^-5	0.776	INTRON CG30089	TF binding site mE1_TFBS_HSA
3L	2202884	3L_2202884_SNP [dm3] 3L_2202884_SNP [dm6]	C	T	5.004e^-5	0.776	INTERGENIC
X	5005222	X_5005222_SNP [dm3] X_5111189_SNP [dm6]	C	A	5.020e^-5	0.776	INTRON rg & 1 other
2L	9200049	2L_9200049_SNP [dm3] 2L_9200049_SNP [dm6]	G	A	5.035e^-5	0.776	INTRON tai
3L	2413105	3L_2413105_DEL [dm3] 3L_2413105_DEL [dm6]	CTATATATTAC...	C	5.039e^-5	0.776	UPSTREAM CG45186 INTRON CG45186
3L	2877587	3L_2877587_SNP [dm3] 3L_2877587_SNP [dm6]	C	T	5.131e^-5	0.776	INTRON CG43444
3L	1438738	3L_1438738_SNP [dm3] 3L_1438738_SNP [dm6]	T	A	5.137e^-5	0.776	UPSTREAM SA-2 INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	16905005	2L_16905005_SNP [dm3] 2L_16905005_SNP [dm6]	T	G	5.169e^-5	0.776	INTRON tweek
3R	23652337	3R_23652337_SNP [dm3] 3R_27826615_SNP [dm6]	G	C	5.217e^-5	0.776	INTRON CG34353	TF binding site BDTNP1_TFBS_da
3R	6970086	3R_6970086_SNP [dm3] 3R_11144364_SNP [dm6]	A	T	5.239e^-5	0.776	UTR_3_PRIME CheA86a
2L	12724307	2L_12724307_SNP [dm3] 2L_12724307_SNP [dm6]	G	A	5.242e^-5	0.776	SYNONYMOUS_CODING MRP	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12724310	2L_12724310_SNP [dm3] 2L_12724310_SNP [dm6]	C	A	5.242e^-5	0.776	SYNONYMOUS_CODING MRP	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4635521	2L_4635521_SNP [dm3] 2L_4635521_SNP [dm6]	A	C	5.264e^-5	0.776	INTERGENIC
2L	16917319	2L_16917319_SNP [dm3] 2L_16917319_SNP [dm6]	A	T	5.266e^-5	0.776	DOWNSTREAM tweek INTERGENIC
3R	18658047	3R_18658047_SNP [dm3] 3R_22832325_SNP [dm6]	G	A	5.344e^-5	0.776	INTERGENIC
3R	24446690	3R_24446690_SNP [dm3] 3R_28620968_SNP [dm6]	G	C	5.442e^-5	0.776	INTRON CG10011	TF binding site BDTNP1_TFBS_twi
2R	12479789	2R_12479789_SNP [dm3] 2R_16592284_SNP [dm6]	T	A	5.461e^-5	0.776	INTRON CG8306
2L	7586792	2L_7586792_SNP [dm3] 2L_7586792_SNP [dm6]	T	A	5.555e^-5	0.776	INTERGENIC
2L	11324625	2L_11324625_SNP [dm3] 2L_11324625_SNP [dm6]	T	A	5.636e^-5	0.776	INTERGENIC
3R	13959624	3R_13959624_SNP [dm3] 3R_18133902_SNP [dm6]	G	A	5.866e^-5	0.776	UTR_3_PRIME sr DOWNSTREAM sr
3R	25994436	3R_25994436_SNP [dm3] 3R_30168714_SNP [dm6]	G	A	5.929e^-5	0.776	SYNONYMOUS_CODING CG31028
3L	3002952	3L_3002952_SNP [dm3] 3L_3002952_SNP [dm6]	G	T	5.986e^-5	0.776	UPSTREAM FMRFaR INTRON FMRFaR
2L	20881288	2L_20881288_SNP [dm3] 2L_20881288_SNP [dm6]	A	G	6.019e^-5	0.776	INTRON sky & 1 other
2L	9714247	2L_9714247_SNP [dm3] 2L_9714247_SNP [dm6]	C	T	6.024e^-5	0.776	UTR_3_PRIME Nckx30C
2R	17413079	2R_17413079_SNP [dm3] 2R_21525574_SNP [dm6]	T	C	6.171e^-5	0.776	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	16917322	2L_16917322_SNP [dm3] 2L_16917322_SNP [dm6]	C	T	6.314e^-5	0.776	DOWNSTREAM tweek INTERGENIC
3R	26039909	3R_26039909_SNP [dm3] 3R_30214187_SNP [dm6]	G	C	6.357e^-5	0.776	UPSTREAM CecB INTERGENIC
2L	5800417	2L_5800417_SNP [dm3] 2L_5800417_SNP [dm6]	T	G	6.365e^-5	0.776	UPSTREAM CG9171 DOWNSTREAM CG14005 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_Trl
2R	11141515	2R_11141515_SNP [dm3] 2R_15254010_SNP [dm6]	A	G	6.562e^-5	0.776	INTRON scb	TF binding site mE1_TFBS_cad
2R	11141516	2R_11141516_SNP [dm3] 2R_15254011_SNP [dm6]	T	A	6.562e^-5	0.776	INTRON scb	TF binding site mE1_TFBS_cad
3L	5544548	3L_5544548_SNP [dm3] 3L_5551448_SNP [dm6]	T	A	6.574e^-5	0.776	UPSTREAM CG10625 INTERGENIC
3R	25632304	3R_25632304_SNP [dm3] 3R_29806582_SNP [dm6]	T	C	6.696e^-5	0.776	SYNONYMOUS_CODING ncd UPSTREAM ca	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3R	25632311	3R_25632311_SNP [dm3] 3R_29806589_SNP [dm6]	T	C	6.696e^-5	0.776	NON_SYNONYMOUS_CODING ncd UPSTREAM ca	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3L	2531043	3L_2531043_SNP [dm3] 3L_2531043_SNP [dm6]	T	C	6.703e^-5	0.776	INTRON Spn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	21107610	2R_21107610_SNP [dm3] 2R_25220087_SNP [dm6]	C	A	6.717e^-5	0.776	INTRON CG9380	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	11210550	2L_11210550_SNP [dm3] 2L_11210550_SNP [dm6]	G	A	6.732e^-5	0.776	UPSTREAM ab INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	3810422	3L_3810422_SNP [dm3] 3L_3810422_SNP [dm6]	G	A	6.821e^-5	0.776	SYNONYMOUS_CODING CG32263 UPSTREAM CG32262 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	3810428	3L_3810428_SNP [dm3] 3L_3810428_SNP [dm6]	C	G	6.821e^-5	0.776	SYNONYMOUS_CODING CG32263 UPSTREAM CG32262 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	23931650	3R_23931650_SNP [dm3] 3R_28105928_SNP [dm6]	A	G	7.089e^-5	0.776	INTERGENIC
3L	2121464	3L_2121464_SNP [dm3] 3L_2121464_SNP [dm6]	C	A	7.092e^-5	0.776	INTRON zormin	TF binding site BDTNP1_TFBS_twi
3L	3291586	3L_3291586_SNP [dm3] 3L_3291586_SNP [dm6]	G	A	7.162e^-5	0.776	UTR_5_PRIME CG12009 DOWNSTREAM CG12017
3L	1177774	3L_1177774_SNP [dm3] 3L_1177774_SNP [dm6]	C	T	7.169e^-5	0.776	UPSTREAM bab2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	17933664	3R_17933664_SNP [dm3] 3R_22107942_SNP [dm6]	C	T	7.219e^-5	0.776	INTRON CG5778	TF binding site BDTNP1_TFBS_dl
3L	4607309	3L_4607309_SNP [dm3] 3L_4607309_SNP [dm6]	T	C	7.291e^-5	0.776	INTRON Src64B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4607314	3L_4607314_SNP [dm3] 3L_4607314_SNP [dm6]	A	G	7.291e^-5	0.776	INTRON Src64B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4607319	3L_4607319_SNP [dm3] 3L_4607319_SNP [dm6]	T	C	7.291e^-5	0.776	INTRON Src64B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4607322	3L_4607322_DEL [dm3] 3L_4607322_DEL [dm6]	AATGTTAGCTTAAGAACTAT...	A	7.291e^-5	0.776	INTRON Src64B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19517099	2R_19517099_SNP [dm3] 2R_23629576_SNP [dm6]	G	T	7.587e^-5	0.776	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	19518403	2R_19518403_SNP [dm3] 2R_23630880_SNP [dm6]	A	T	7.587e^-5	0.776	INTERGENIC
2L	19826867	2L_19826867_SNP [dm3] 2L_19826867_SNP [dm6]	C	A	7.607e^-5	0.776	UTR_5_PRIME sick UPSTREAM sick INTRON sick
X	3800991	X_3800991_SNP [dm3] X_3906958_SNP [dm6]	C	G	7.708e^-5	0.776	NON_SYNONYMOUS_CODING CG42541	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19944816	3R_19944816_SNP [dm3] 3R_24119094_SNP [dm6]	C	A	7.780e^-5	0.776	INTRON Rootletin
2R	15444304	2R_15444304_SNP [dm3] 2R_19556799_SNP [dm6]	A	G	7.955e^-5	0.776	INTRON sm
3R	23016365	3R_23016365_SNP [dm3] 3R_27190643_SNP [dm6]	A	C	7.997e^-5	0.776	INTRON Ser	regulatory region REDfly_CRMs
3L	8262452	3L_8262452_SNP [dm3] 3L_8269352_SNP [dm6]	A	C	8.000e^-5	0.776	INTRON Dscam4
2R	11763250	2R_11763250_SNP [dm3] 2R_15875745_SNP [dm6]	G	C	8.066e^-5	0.776	SYNONYMOUS_CODING sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	19372556	X_19372556_SNP [dm3] X_19478523_SNP [dm6]	T	G	8.096e^-5	0.776	SYNONYMOUS_CODING CG32533 DOWNSTREAM mRpS14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	7910610	X_7910610_SNP [dm3] X_8016577_SNP [dm6]	T	C	8.136e^-5	0.776	INTRON Tbh
2R	10011679	2R_10011679_SNP [dm3] 2R_14124174_SNP [dm6]	A	G	8.189e^-5	0.776	INTRON Prosap
3L	3995096	3L_3995096_DEL [dm3] 3L_3995096_DEL [dm6]	AA	A	8.190e^-5	0.776	INTERGENIC
X	15823944	X_15823944_SNP [dm3] X_15929911_SNP [dm6]	G	A	8.196e^-5	0.776	SYNONYMOUS_CODING Ranbp16
3R	22196913	3R_22196913_SNP [dm3] 3R_26371191_SNP [dm6]	T	A	8.269e^-5	0.776	INTERGENIC
2L	3780919	2L_3780919_SNP [dm3] 2L_3780919_SNP [dm6]	C	T	8.452e^-5	0.776	INTRON bowl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9745879	2L_9745879_SNP [dm3] 2L_9745879_SNP [dm6]	G	C	8.497e^-5	0.776	INTRON Nckx30C
2L	2080565	2L_2080565_SNP [dm3] 2L_2080565_SNP [dm6]	C	A	8.637e^-5	0.776	SYNONYMOUS_CODING CG12674 INTRON dpr3
2L	2680402	2L_2680402_SNP [dm3] 2L_2680402_SNP [dm6]	T	A	8.686e^-5	0.776	INTRON CG31690
3R	23526000	3R_23526000_SNP [dm3] 3R_27700278_SNP [dm6]	A	G	8.745e^-5	0.776	UPSTREAM btz & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	14116123	2R_14116123_SNP [dm3] 2R_18228618_SNP [dm6]	A	C	8.746e^-5	0.776	DOWNSTREAM CR45310 EXON CR45311
2L	9981987	2L_9981987_SNP [dm3] 2L_9981987_SNP [dm6]	T	A	8.768e^-5	0.776	INTERGENIC	TF binding site mE1_TFBS_cad
X	21303415	X_21303415_SNP [dm3] X_21432388_SNP [dm6]	C	T	8.791e^-5	0.776	INTRON CG42343
2L	1788755	2L_1788755_SNP [dm3] 2L_1788755_SNP [dm6]	C	T	8.800e^-5	0.776	DOWNSTREAM Gr22d INTERGENIC
3R	22533496	3R_22533496_SNP [dm3] 3R_26707774_SNP [dm6]	G	A	8.895e^-5	0.776	INTRON amon	TF binding site mE1_TFBS_ftz_f1
3L	5528634	3L_5528634_SNP [dm3] 3L_5535534_SNP [dm6]	C	T	8.906e^-5	0.776	SYNONYMOUS_CODING CG13285
2L	20419082	2L_20419082_SNP [dm3] 2L_20419082_SNP [dm6]	T	C	8.936e^-5	0.776	UPSTREAM snoRNA:Psi18S-525d & 5 others DOWNSTREAM snoRNA:Psi18S-525a & 3 others INTRON Arpc2 EXON snoRNA:Psi18S-640b	TF binding site mE1_TFBS_zfh1
2L	16097936	2L_16097936_SNP [dm3] 2L_16097936_SNP [dm6]	A	T	9.064e^-5	0.776	INTERGENIC
2L	16097937	2L_16097937_SNP [dm3] 2L_16097937_SNP [dm6]	A	T	9.064e^-5	0.776	INTERGENIC
X	809889	X_809889_SNP [dm3] X_915856_SNP [dm6]	C	T	9.410e^-5	0.776	INTRON CG43867
2L	20413699	2L_20413699_SNP [dm3] 2L_20413699_SNP [dm6]	T	C	9.549e^-5	0.776	INTRON CG10947	transposable element FlyBase
3L	18195587	3L_18195587_SNP [dm3] 3L_18202487_SNP [dm6]	A	T	9.727e^-5	0.776	NON_SYNONYMOUS_CODING CG7320	TF binding site mE1_TFBS_inv
2L	4635509	2L_4635509_SNP [dm3] 2L_4635509_SNP [dm6]	C	A	9.762e^-5	0.776	INTERGENIC
3L	8736354	3L_8736354_DEL [dm3] 3L_8743254_DEL [dm6]	AA	A	9.774e^-5	0.776	INTRON Prm	TF binding site BDTNP1_TFBS_twi
3L	3291359	3L_3291359_SNP [dm3] 3L_3291359_SNP [dm6]	T	G	9.797e^-5	0.776	UPSTREAM CG12009 DOWNSTREAM CG12017 INTERGENIC
2L	3314829	2L_3314829_SNP [dm3] 2L_3314829_SNP [dm6]	A	G	9.824e^-5	0.776	INTRON CG3277
3L	2665761	3L_2665761_SNP [dm3] 3L_2665761_SNP [dm6]	A	G	9.874e^-5	0.776	INTRON Fife
3L	2665776	3L_2665776_SNP [dm3] 3L_2665776_SNP [dm6]	T	C	9.874e^-5	0.776	INTRON Fife
3L	2665779	3L_2665779_SNP [dm3] 3L_2665779_SNP [dm6]	G	T	9.874e^-5	0.776	INTRON Fife
3L	17054238	3L_17054238_SNP [dm3] 3L_17061138_SNP [dm6]	T	G	9.883e^-5	0.776	UTR_3_PRIME Rbp6
3L	5256380	3L_5256380_SNP [dm3] 3L_5263280_SNP [dm6]	G	T	9.928e^-5	0.776	INTRON shep
3L	5099636	3L_5099636_SNP [dm3] 3L_5099636_SNP [dm6]	T	C	9.954e^-5	0.776	EXON CR34047
3L	5099642	3L_5099642_SNP [dm3] 3L_5099642_SNP [dm6]	T	C	9.954e^-5	0.776	EXON CR34047
2L	17024745	2L_17024745_INS [dm3] 2L_17024745_INS [dm6]	A	ATTT	1.000e^-4	0.776	INTERGENIC
2L	5513956	2L_5513956_SNP [dm3] 2L_5513956_SNP [dm6]	G	T	1.006e^-4	0.776	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3R	22188530	3R_22188530_SNP [dm3] 3R_26362808_SNP [dm6]	G	A	1.017e^-4	0.776	DOWNSTREAM CG33970 INTERGENIC
2R	10406271	2R_10406271_SNP [dm3] 2R_14518766_SNP [dm6]	C	A	1.028e^-4	0.776	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10406280	2R_10406280_SNP [dm3] 2R_14518775_SNP [dm6]	A	T	1.028e^-4	0.776	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3024251	3L_3024251_SNP [dm3] 3L_3024251_SNP [dm6]	C	A	1.029e^-4	0.776	UTR_3_PRIME aly DOWNSTREAM aly
X	12903927	X_12903927_SNP [dm3] X_13009894_SNP [dm6]	G	C	1.035e^-4	0.776	INTRON rad
3R	18536985	3R_18536985_SNP [dm3] 3R_22711263_SNP [dm6]	G	T	1.041e^-4	0.776	UTR_3_PRIME wge UPSTREAM CG4907 DOWNSTREAM wge
2L	6500515	2L_6500515_INS [dm3] 2L_6500515_INS [dm6]	A	AG	1.045e^-4	0.776	INTRON CG31637
3R	26876637	3R_26876637_SNP [dm3] 3R_31050915_SNP [dm6]	C	A	1.048e^-4	0.776	DOWNSTREAM mir-4948 INTRON Aph-4	TF binding site mE1_TFBS_cad
3R	6384114	3R_6384114_SNP [dm3] 3R_10558392_SNP [dm6]	C	G	1.050e^-4	0.776	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6360650	X_6360650_SNP [dm3] X_6466617_SNP [dm6]	T	C	1.051e^-4	0.776	UTR_3_PRIME CG42340 INTRON CG42340
X	8242816	X_8242816_SNP [dm3] X_8348783_SNP [dm6]	A	G	1.056e^-4	0.776	INTRON nAChRalpha3
3R	20281667	3R_20281667_SNP [dm3] 3R_24455945_SNP [dm6]	T	G	1.059e^-4	0.776	INTRON nAChRalpha1
3R	22189943	3R_22189943_SNP [dm3] 3R_26364221_SNP [dm6]	G	C	1.085e^-4	0.776	INTERGENIC
2R	17975737	2R_17975737_SNP [dm3] 2R_22088232_SNP [dm6]	A	G	1.096e^-4	0.776	UPSTREAM CG13502 INTRON CG13502
3L	8262753	3L_8262753_SNP [dm3] 3L_8269653_SNP [dm6]	T	A	1.097e^-4	0.776	INTRON Dscam4
2L	20966949	2L_20966949_SNP [dm3] 2L_20966949_SNP [dm6]	G	T	1.097e^-4	0.776	UTR_3_PRIME CG42238	TF binding site BDTNP1_TFBS_twi
X	21915306	X_21915306_SNP [dm3] X_22513470_SNP [dm6]	G	A	1.101e^-4	0.776	DOWNSTREAM CR43962 INTERGENIC	transposable element FlyBase
2R	17069132	2R_17069132_SNP [dm3] 2R_21181627_SNP [dm6]	T	C	1.102e^-4	0.776	DOWNSTREAM tRNA:CR33539 INTRON Pu	TF binding site mE1_TFBS_HSA
3L	16018075	3L_16018075_SNP [dm3] 3L_16024975_SNP [dm6]	T	A	1.110e^-4	0.776	INTRON Notum	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3L	8877770	3L_8877770_SNP [dm3] 3L_8884670_SNP [dm6]	T	A	1.114e^-4	0.776	INTRON dally
2R	18624061	2R_18624061_DEL [dm3] 2R_22736556_DEL [dm6]	CATA	C	1.115e^-4	0.776	INTRON jbug
2L	6500202	2L_6500202_SNP [dm3] 2L_6500202_SNP [dm6]	A	C	1.122e^-4	0.776	INTRON CG31637
2L	20434475	2L_20434475_SNP [dm3] 2L_20434475_SNP [dm6]	C	A	1.124e^-4	0.776	INTRON CG31688
3R	18696243	3R_18696243_SNP [dm3] 3R_22870521_SNP [dm6]	C	T	1.128e^-4	0.776	INTERGENIC
3R	25632358	3R_25632358_SNP [dm3] 3R_29806636_SNP [dm6]	T	G	1.130e^-4	0.776	UTR_5_PRIME ncd UPSTREAM ca	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3L	20283520	3L_20283520_SNP [dm3] 3L_20290420_SNP [dm6]	C	A	1.137e^-4	0.776	DOWNSTREAM CR43890 INTRON gogo
X	13573182	X_13573182_SNP [dm3] X_13679149_SNP [dm6]	T	G	1.143e^-4	0.776	SYNONYMOUS_CODING CG12177	TF binding site BDTNP1_TFBS_twi
2L	3391573	2L_3391573_SNP [dm3] 2L_3391573_SNP [dm6]	C	T	1.169e^-4	0.776	INTERGENIC
2L	15836531	2L_15836531_SNP [dm3] 2L_15836531_SNP [dm6]	A	G	1.171e^-4	0.776	UPSTREAM CG18518 DOWNSTREAM CR31822 INTERGENIC
3L	1437716	3L_1437716_SNP [dm3] 3L_1437716_SNP [dm6]	C	T	1.177e^-4	0.776	UTR_5_PRIME SA-2 INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl
3R	18536996	3R_18536996_INS [dm3] 3R_22711274_INS [dm6]	T	TGCTTG	1.177e^-4	0.776	UTR_3_PRIME wge UPSTREAM CG4907 DOWNSTREAM wge
3R	26879101	3R_26879101_SNP [dm3] 3R_31053379_SNP [dm6]	G	A	1.197e^-4	0.776	DOWNSTREAM Aph-4 & 1 other INTRON l_3_03670	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	26879102	3R_26879102_SNP [dm3] 3R_31053380_SNP [dm6]	A	G	1.197e^-4	0.776	DOWNSTREAM Aph-4 & 1 other INTRON l_3_03670	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	26879106	3R_26879106_DEL [dm3] 3R_31053384_DEL [dm6]	CAAAACTACACC...	C	1.197e^-4	0.776	DOWNSTREAM Aph-4 & 1 other INTRON l_3_03670	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	26879122	3R_26879122_SNP [dm3] 3R_31053400_SNP [dm6]	C	G	1.197e^-4	0.776	DOWNSTREAM Aph-4 & 1 other INTRON l_3_03670	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	26879159	3R_26879159_SNP [dm3] 3R_31053437_SNP [dm6]	C	T	1.197e^-4	0.776	DOWNSTREAM Aph-4 & 1 other INTRON l_3_03670	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	26879176	3R_26879176_SNP [dm3] 3R_31053454_SNP [dm6]	T	A	1.197e^-4	0.776	DOWNSTREAM Aph-4 & 1 other INTRON l_3_03670	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	26879185	3R_26879185_SNP [dm3] 3R_31053463_SNP [dm6]	C	A	1.197e^-4	0.776	DOWNSTREAM Aph-4 & 1 other INTRON l_3_03670	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	23490526	3R_23490526_SNP [dm3] 3R_27664804_SNP [dm6]	G	A	1.211e^-4	0.776	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	2020400	3R_2020400_SNP [dm3] 3R_6194678_SNP [dm6]	T	C	1.211e^-4	0.776	UTR_3_PRIME NPFR INTRON NPFR
3R	23759237	3R_23759237_SNP [dm3] 3R_27933515_SNP [dm6]	T	A	1.220e^-4	0.776	DOWNSTREAM mino INTRON Mes-4
2L	6500277	2L_6500277_SNP [dm3] 2L_6500277_SNP [dm6]	T	C	1.226e^-4	0.776	INTRON CG31637
3R	822236	3R_822236_DEL [dm3] 3R_4996514_DEL [dm6]	ATAAA	A	1.226e^-4	0.776	INTRON CG2022	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	5053086	3L_5053086_SNP [dm3] 3L_5053086_SNP [dm6]	G	A	1.230e^-4	0.776	INTRON Con
3L	1505599	3L_1505599_SNP [dm3] 3L_1505599_SNP [dm6]	G	A	1.231e^-4	0.776	SYNONYMOUS_CODING cue INTRON Psa	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	13573128	X_13573128_SNP [dm3] X_13679095_SNP [dm6]	C	A	1.235e^-4	0.776	SYNONYMOUS_CODING CG12177
3R	25631741	3R_25631741_SNP [dm3] 3R_29806019_SNP [dm6]	C	T	1.238e^-4	0.776	SYNONYMOUS_CODING ncd UPSTREAM ca	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	17439018	2R_17439018_SNP [dm3] 2R_21551513_SNP [dm6]	A	T	1.264e^-4	0.776	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	9154678	2R_9154678_SNP [dm3] 2R_13267173_SNP [dm6]	T	A	1.284e^-4	0.776	DOWNSTREAM CG42319 & 1 other INTERGENIC
3R	26859483	3R_26859483_SNP [dm3] 3R_31033761_SNP [dm6]	C	A	1.285e^-4	0.776	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	5099659	3L_5099659_SNP [dm3] 3L_5099659_SNP [dm6]	G	T	1.291e^-4	0.776	EXON CR34047
3L	2173108	3L_2173108_SNP [dm3] 3L_2173108_SNP [dm6]	C	T	1.294e^-4	0.776	NON_SYNONYMOUS_CODING CG15820 UPSTREAM CR15821	TF binding site mE1_TFBS_cad
2R	11721725	2R_11721725_SNP [dm3] 2R_15834220_SNP [dm6]	A	G	1.304e^-4	0.776	INTRON tun & 1 other	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE
3R	9965442	3R_9965442_SNP [dm3] 3R_14139720_SNP [dm6]	G	A	1.305e^-4	0.776	INTERGENIC
3L	3995095	3L_3995095_SNP [dm3] 3L_3995095_SNP [dm6]	A	G	1.307e^-4	0.776	INTERGENIC
2R	11404445	2R_11404445_SNP [dm3] 2R_15516940_SNP [dm6]	G	A	1.310e^-4	0.776	UTR_3_PRIME Khc-73 DOWNSTREAM Khc-73
3R	22533172	3R_22533172_SNP [dm3] 3R_26707450_SNP [dm6]	A	G	1.312e^-4	0.776	INTRON amon	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA
3R	18653456	3R_18653456_SNP [dm3] 3R_22827734_SNP [dm6]	A	G	1.314e^-4	0.776	UPSTREAM CR44350 INTERGENIC
2L	13622191	2L_13622191_DEL [dm3] 2L_13622191_DEL [dm6]	CTGCACAAAGATTCTCACTC...	C	1.319e^-4	0.776	INTRON kuz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	8748562	3L_8748562_SNP [dm3] 3L_8755462_SNP [dm6]	A	T	1.324e^-4	0.776	UPSTREAM CG6576 INTRON Fhos
2R	10249367	2R_10249367_SNP [dm3] 2R_14361862_SNP [dm6]	A	T	1.335e^-4	0.776	UPSTREAM Arc2 & 1 other INTERGENIC
3R	24706419	3R_24706419_INS [dm3] 3R_28880697_INS [dm6]	A	ATA	1.336e^-4	0.776	UPSTREAM CG14527 & 1 other INTRON CG33203
3R	26038832	3R_26038832_SNP [dm3] 3R_30213110_SNP [dm6]	T	G	1.336e^-4	0.776	DOWNSTREAM CecB & 1 other EXON Cec2
3R	6711687	3R_6711687_SNP [dm3] 3R_10885965_SNP [dm6]	C	T	1.339e^-4	0.776	UTR_5_PRIME Leash UPSTREAM CG14696	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	4313712	3L_4313712_SNP [dm3] 3L_4313712_SNP [dm6]	C	T	1.347e^-4	0.776	SYNONYMOUS_CODING Claspin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	7586832	2L_7586832_SNP [dm3] 2L_7586832_SNP [dm6]	A	G	1.364e^-4	0.776	INTERGENIC
2R	21002065	2R_21002065_SNP [dm3] 2R_25114542_SNP [dm6]	C	T	1.371e^-4	0.776	INTRON lov	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	21008493	2R_21008493_SNP [dm3] 2R_25120970_SNP [dm6]	C	A	1.371e^-4	0.776	INTRON lov	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	21060053	2R_21060053_SNP [dm3] 2R_25172530_SNP [dm6]	A	G	1.371e^-4	0.776	SYNONYMOUS_CODING Sfp60F
3R	26932287	3R_26932287_SNP [dm3] 3R_31106565_SNP [dm6]	C	G	1.382e^-4	0.776	UTR_3_PRIME CG11318
3L	3192162	3L_3192162_SNP [dm3] 3L_3192162_SNP [dm6]	C	T	1.397e^-4	0.776	NON_SYNONYMOUS_CODING CG14965 UPSTREAM Hsp83	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	7601342	2L_7601342_SNP [dm3] 2L_7601342_SNP [dm6]	G	T	1.401e^-4	0.776	INTERGENIC
3R	2408207	3R_2408207_SNP [dm3] 3R_6582485_SNP [dm6]	A	G	1.403e^-4	0.776	DOWNSTREAM CG2336 INTRON dpr11
3R	9029461	3R_9029461_SNP [dm3] 3R_13203739_SNP [dm6]	C	A	1.405e^-4	0.776	INTERGENIC
X	8441181	X_8441181_SNP [dm3] X_8547148_SNP [dm6]	C	T	1.409e^-4	0.776	SYNONYMOUS_CODING Nrg	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	14270338	2R_14270338_SNP [dm3] 2R_18382833_SNP [dm6]	G	A	1.415e^-4	0.776	NON_SYNONYMOUS_CODING IM23 UPSTREAM CG43202
X	6364725	X_6364725_SNP [dm3] X_6470692_SNP [dm6]	G	C	1.420e^-4	0.776	DOWNSTREAM CG33667 INTRON CG42340
2L	9226952	2L_9226952_SNP [dm3] 2L_9226952_SNP [dm6]	C	A	1.421e^-4	0.776	INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2R	3926082	2R_3926082_SNP [dm3] 2R_8038577_SNP [dm6]	C	T	1.429e^-4	0.776	INTRON Optix	regulatory region REDfly_CRMs
3R	22195093	3R_22195093_SNP [dm3] 3R_26369371_SNP [dm6]	C	A	1.445e^-4	0.776	INTERGENIC
3R	22195095	3R_22195095_SNP [dm3] 3R_26369373_SNP [dm6]	G	T	1.445e^-4	0.776	INTERGENIC
3R	22195154	3R_22195154_DEL [dm3] 3R_26369432_DEL [dm6]	AAA	A	1.445e^-4	0.776	INTERGENIC
3R	22197350	3R_22197350_INS [dm3] 3R_26371628_INS [dm6]	A	ACTACTACTACT...	1.445e^-4	0.776	INTERGENIC
3R	26877676	3R_26877676_SNP [dm3] 3R_31051954_SNP [dm6]	T	A	1.445e^-4	0.776	UPSTREAM mir-4948 DOWNSTREAM l_3_03670 INTRON Aph-4	TF binding site mE1_TFBS_cad
2R	9528251	2R_9528251_SNP [dm3] 2R_13640746_SNP [dm6]	A	C	1.451e^-4	0.776	INTRON fas
3L	971388	3L_971388_SNP [dm3] 3L_971388_SNP [dm6]	C	A	1.457e^-4	0.776	INTRON Glut1
3L	5062698	3L_5062698_SNP [dm3] 3L_5062698_SNP [dm6]	G	T	1.460e^-4	0.776	INTRON Con
2L	21189930	2L_21189930_SNP [dm3] 2L_21189930_SNP [dm6]	A	T	1.463e^-4	0.776	INTRON Ret
3R	23526007	3R_23526007_SNP [dm3] 3R_27700285_SNP [dm6]	C	T	1.463e^-4	0.776	UPSTREAM btz & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	18536999	3R_18536999_SNP [dm3] 3R_22711277_SNP [dm6]	G	T	1.464e^-4	0.776	UTR_3_PRIME wge UPSTREAM CG4907 DOWNSTREAM wge
3R	18537001	3R_18537001_SNP [dm3] 3R_22711279_SNP [dm6]	G	A	1.464e^-4	0.776	UTR_3_PRIME wge UPSTREAM CG4907 DOWNSTREAM wge
2L	20434520	2L_20434520_SNP [dm3] 2L_20434520_SNP [dm6]	G	A	1.470e^-4	0.776	INTRON CG31688	transposable element FlyBase
2L	19816601	2L_19816601_SNP [dm3] 2L_19816601_SNP [dm6]	G	T	1.484e^-4	0.776	UPSTREAM snRNA:U2:38ABa DOWNSTREAM snRNA:U5:38ABb INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	5682691	2R_5682691_SNP [dm3] 2R_9795186_SNP [dm6]	C	T	1.484e^-4	0.776	UTR_5_PRIME CG1698 INTRON CG1688 & 1 other	TF binding site mE1_TFBS_cad
3R	6002952	3R_6002952_SNP [dm3] 3R_10177230_SNP [dm6]	C	T	1.487e^-4	0.776	INTRON CG12814
2R	16949572	2R_16949572_SNP [dm3] 2R_21062067_SNP [dm6]	A	G	1.490e^-4	0.776	SYNONYMOUS_CODING Cht8 DOWNSTREAM mRpL54	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9058626	3R_9058626_SNP [dm3] 3R_13232904_SNP [dm6]	G	T	1.490e^-4	0.776	INTRON Ace
2L	3724707	2L_3724707_SNP [dm3] 2L_3724707_SNP [dm6]	A	T	1.495e^-4	0.776	INTRON Shaw
2L	3860948	2L_3860948_SNP [dm3] 2L_3860948_SNP [dm6]	T	G	1.512e^-4	0.776	DOWNSTREAM CR44078 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17069145	2R_17069145_SNP [dm3] 2R_21181640_SNP [dm6]	C	A	1.512e^-4	0.776	SPLICE_SITE_REGION Pu DOWNSTREAM tRNA:CR33539 INTRON Pu	TF binding site mE1_TFBS_HSA
3L	5256564	3L_5256564_SNP [dm3] 3L_5263464_SNP [dm6]	T	C	1.514e^-4	0.776	INTRON shep
2R	9814393	2R_9814393_SNP [dm3] 2R_13926888_SNP [dm6]	C	A	1.516e^-4	0.776	INTRON shot	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	13453063	X_13453063_SNP [dm3] X_13559030_SNP [dm6]	A	G	1.520e^-4	0.776	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	2413299	3L_2413299_SNP [dm3] 3L_2413299_SNP [dm6]	G	C	1.521e^-4	0.776	UPSTREAM CG45186 INTRON CG45186
3L	3022598	3L_3022598_SNP [dm3] 3L_3022598_SNP [dm6]	A	G	1.521e^-4	0.776	INTERGENIC
3L	3654915	3L_3654915_SNP [dm3] 3L_3654915_SNP [dm6]	A	T	1.521e^-4	0.776	UPSTREAM CG10862 INTERGENIC
3R	26877671	3R_26877671_SNP [dm3] 3R_31051949_SNP [dm6]	G	T	1.521e^-4	0.776	UPSTREAM mir-4948 DOWNSTREAM l_3_03670 INTRON Aph-4	TF binding site mE1_TFBS_cad
3R	25213668	3R_25213668_SNP [dm3] 3R_29387946_SNP [dm6]	C	T	1.532e^-4	0.776	INTRON Ptp99A
3R	22181239	3R_22181239_SNP [dm3] 3R_26355517_SNP [dm6]	C	G	1.537e^-4	0.776	INTRON CG33970
3R	22181316	3R_22181316_SNP [dm3] 3R_26355594_SNP [dm6]	T	C	1.537e^-4	0.776	SPLICE_SITE_REGION CG33970 INTRON CG33970
3R	22181317	3R_22181317_INS [dm3] 3R_26355595_INS [dm6]	T	TATACA	1.537e^-4	0.776	SPLICE_SITE_REGION CG33970 INTRON CG33970
2L	20967619	2L_20967619_SNP [dm3] 2L_20967619_SNP [dm6]	G	A	1.543e^-4	0.776	NON_SYNONYMOUS_CODING CG42238	TF binding site BDTNP1_TFBS_twi
3L	4994181	3L_4994181_SNP [dm3] 3L_4994181_SNP [dm6]	G	A	1.546e^-4	0.776	SYNONYMOUS_CODING CG32232 INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4596726	3L_4596726_SNP [dm3] 3L_4596726_SNP [dm6]	G	T	1.554e^-4	0.776	INTRON Src64B	TF binding site mE1_TFBS_cad
3L	18198334	3L_18198334_SNP [dm3] 3L_18205234_SNP [dm6]	A	C	1.565e^-4	0.776	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16959106	2R_16959106_SNP [dm3] 2R_21071601_SNP [dm6]	G	T	1.578e^-4	0.776	SYNONYMOUS_CODING CG10527 EXON CR44704	TF binding site mE1_TFBS_cad
3R	22532774	3R_22532774_SNP [dm3] 3R_26707052_SNP [dm6]	T	C	1.585e^-4	0.776	INTRON amon
3R	22532782	3R_22532782_SNP [dm3] 3R_26707060_SNP [dm6]	T	C	1.585e^-4	0.776	INTRON amon
3R	22532877	3R_22532877_SNP [dm3] 3R_26707155_SNP [dm6]	C	T	1.585e^-4	0.776	INTRON amon	TF binding site mE1_TFBS_ftz_f1
2L	16097941	2L_16097941_SNP [dm3] 2L_16097941_SNP [dm6]	G	C	1.594e^-4	0.776	INTERGENIC
2L	5427878	2L_5427878_SNP [dm3] 2L_5427878_SNP [dm6]	T	C	1.595e^-4	0.776	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	20524829	3R_20524829_SNP [dm3] 3R_24699107_SNP [dm6]	C	T	1.598e^-4	0.776	INTRON slo	TF binding site BDTNP1_TFBS_dl
2L	7586784	2L_7586784_SNP [dm3] 2L_7586784_SNP [dm6]	C	T	1.607e^-4	0.776	INTERGENIC
2L	7586800	2L_7586800_INS [dm3] 2L_7586800_INS [dm6]	T	TA	1.607e^-4	0.776	INTERGENIC
2L	7586808	2L_7586808_SNP [dm3] 2L_7586808_SNP [dm6]	A	T	1.607e^-4	0.776	INTERGENIC
2L	7586813	2L_7586813_SNP [dm3] 2L_7586813_SNP [dm6]	T	A	1.607e^-4	0.776	INTERGENIC
2L	7586836	2L_7586836_SNP [dm3] 2L_7586836_SNP [dm6]	T	C	1.607e^-4	0.776	INTERGENIC
2L	7586840	2L_7586840_SNP [dm3] 2L_7586840_SNP [dm6]	T	A	1.607e^-4	0.776	INTERGENIC
3R	25974615	3R_25974615_SNP [dm3] 3R_30148893_SNP [dm6]	G	T	1.612e^-4	0.776	INTRON AdoR
X	12912986	X_12912986_DEL [dm3] X_13018953_DEL [dm6]	AA	A	1.615e^-4	0.776	INTRON rad
2R	10103405	2R_10103405_SNP [dm3] 2R_14215900_SNP [dm6]	C	T	1.615e^-4	0.776	UPSTREAM mir-308 INTRON RpS23	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	2744623	3L_2744623_SNP [dm3] 3L_2744623_SNP [dm6]	C	T	1.621e^-4	0.776	INTRON Mrtf
2L	19272719	2L_19272719_INS [dm3] 2L_19272719_INS [dm6]	A	ACATTGCCAGA...	1.624e^-4	0.776	INTRON CR44190
2L	10487772	2L_10487772_SNP [dm3] 2L_10487772_SNP [dm6]	G	A	1.632e^-4	0.776	SYNONYMOUS_CODING CG7456 UPSTREAM CG6144	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25070170	3R_25070170_SNP [dm3] 3R_29244448_SNP [dm6]	C	A	1.637e^-4	0.776	SPLICE_SITE_DONOR CG31445 DOWNSTREAM SP1029 INTRON CG31445
2L	12496780	2L_12496780_SNP [dm3] 2L_12496780_SNP [dm6]	T	C	1.645e^-4	0.776	SYNONYMOUS_CODING t-cup INTRON bun	TF binding site mE1_TFBS_GATAe
2L	5628184	2L_5628184_SNP [dm3] 2L_5628184_SNP [dm6]	C	T	1.649e^-4	0.776	INTRON CG31646
2L	5628244	2L_5628244_DEL [dm3] 2L_5628244_DEL [dm6]	CCATAGTTACC...	T	1.649e^-4	0.776	INTRON CG31646	TF binding site BDTNP1_TFBS_twi
2L	5628259	2L_5628259_DEL [dm3] 2L_5628259_DEL [dm6]	ATAACCATCCTTTCATCGGA...	A	1.649e^-4	0.776	INTRON CG31646	TF binding site BDTNP1_TFBS_twi
X	17261339	X_17261339_SNP [dm3] X_17367306_SNP [dm6]	G	A	1.656e^-4	0.776	INTERGENIC
3R	20714390	3R_20714390_SNP [dm3] 3R_24888668_SNP [dm6]	G	A	1.658e^-4	0.776	INTRON CG31121	TF binding site mE1_TFBS_cad
2L	10296397	2L_10296397_SNP [dm3] 2L_10296397_SNP [dm6]	A	C	1.661e^-4	0.776	INTRON CYLD	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9981979	2L_9981979_SNP [dm3] 2L_9981979_SNP [dm6]	T	A	1.663e^-4	0.776	INTERGENIC	TF binding site mE1_TFBS_cad
2L	9981985	2L_9981985_SNP [dm3] 2L_9981985_SNP [dm6]	G	T	1.663e^-4	0.776	INTERGENIC	TF binding site mE1_TFBS_cad
2L	6532975	2L_6532975_SNP [dm3] 2L_6532975_SNP [dm6]	C	T	1.666e^-4	0.776	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16018084	3L_16018084_DEL [dm3] 3L_16024984_DEL [dm6]	CA	C	1.673e^-4	0.776	INTRON Notum	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2R	12060086	2R_12060086_SNP [dm3] 2R_16172581_SNP [dm6]	C	A	1.674e^-4	0.776	SPLICE_SITE_REGION Ptp52F INTRON Ptp52F	TF binding site mE1_TFBS_cad
2R	19813907	2R_19813907_SNP [dm3] 2R_23926384_SNP [dm6]	T	C	1.677e^-4	0.776	SYNONYMOUS_CODING CG2812 UTR_3_PRIME Ca-P60A DOWNSTREAM Ca-P60A	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	17419802	2R_17419802_SNP [dm3] 2R_21532297_SNP [dm6]	G	A	1.677e^-4	0.776	UPSTREAM CR44725 INTRON Egfr
2L	20949443	2L_20949443_SNP [dm3] 2L_20949443_SNP [dm6]	T	C	1.687e^-4	0.776	INTERGENIC
2L	12835051	2L_12835051_SNP [dm3] 2L_12835051_SNP [dm6]	C	T	1.687e^-4	0.776	INTERGENIC
3R	6412355	3R_6412355_SNP [dm3] 3R_10586633_SNP [dm6]	A	G	1.693e^-4	0.776	INTRON hth	TF binding site BDTNP1_TFBS_dl
2L	1296035	2L_1296035_INS [dm3] 2L_1296035_INS [dm6]	A	ACATCCCGA	1.695e^-4	0.776	UTR_3_PRIME robo3
2R	5587883	2R_5587883_SNP [dm3] 2R_9700378_SNP [dm6]	A	G	1.709e^-4	0.776	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	976838	2L_976838_SNP [dm3] 2L_976838_SNP [dm6]	A	G	1.711e^-4	0.776	INTERGENIC
2L	3579235	2L_3579235_SNP [dm3] 2L_3579235_SNP [dm6]	A	T	1.712e^-4	0.776	SYNONYMOUS_CODING sob	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2798356	3L_2798356_SNP [dm3] 3L_2798356_SNP [dm6]	C	T	1.720e^-4	0.776	INTRON CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	12060103	2R_12060103_DEL [dm3] 2R_16172598_DEL [dm6]	TT	A	1.724e^-4	0.776	INTRON Ptp52F	TF binding site mE1_TFBS_cad
2R	12060106	2R_12060106_SNP [dm3] 2R_16172601_SNP [dm6]	T	G	1.724e^-4	0.776	INTRON Ptp52F	TF binding site mE1_TFBS_cad
2R	12060109	2R_12060109_SNP [dm3] 2R_16172604_SNP [dm6]	T	A	1.724e^-4	0.776	INTRON Ptp52F	TF binding site mE1_TFBS_cad
3L	3790483	3L_3790483_SNP [dm3] 3L_3790483_SNP [dm6]	T	A	1.728e^-4	0.776	UPSTREAM CG32266 INTRON CG32264	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	18585517	2R_18585517_SNP [dm3] 2R_22698012_SNP [dm6]	G	A	1.730e^-4	0.776	SYNONYMOUS_CODING robo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	292273	3L_292273_SNP [dm3] 3L_292273_SNP [dm6]	A	C	1.737e^-4	0.776	UPSTREAM RhoGEF3 INTRON RhoGEF3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu
X	12977032	X_12977032_SNP [dm3] X_13082999_SNP [dm6]	T	C	1.739e^-4	0.776	SYNONYMOUS_CODING hep UTR_3_PRIME hep
3R	9058575	3R_9058575_SNP [dm3] 3R_13232853_SNP [dm6]	C	T	1.743e^-4	0.776	INTRON Ace
3R	25149986	3R_25149986_DEL [dm3] 3R_29324264_DEL [dm6]	AA	A	1.745e^-4	0.776	INTERGENIC
X	17261395	X_17261395_SNP [dm3] X_17367362_SNP [dm6]	T	C	1.749e^-4	0.776	INTERGENIC
3L	5393357	3L_5393357_SNP [dm3] 3L_5400257_SNP [dm6]	G	C	1.751e^-4	0.776	INTERGENIC
2L	10065827	2L_10065827_SNP [dm3] 2L_10065827_SNP [dm6]	G	A	1.752e^-4	0.776	NON_SYNONYMOUS_CODING CG44153	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	19371767	X_19371767_SNP [dm3] X_19477734_SNP [dm6]	T	C	1.763e^-4	0.776	SYNONYMOUS_CODING CG32533	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26877591	3R_26877591_SNP [dm3] 3R_31051869_SNP [dm6]	T	C	1.777e^-4	0.776	SYNONYMOUS_CODING Aph-4 UPSTREAM mir-4948 DOWNSTREAM l_3_03670	TF binding site mE1_TFBS_cad
3L	722110	3L_722110_SNP [dm3] 3L_722110_SNP [dm6]	T	C	1.780e^-4	0.776	INTERGENIC
3R	24610428	3R_24610428_SNP [dm3] 3R_28784706_SNP [dm6]	G	A	1.801e^-4	0.776	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	25632312	3R_25632312_SNP [dm3] 3R_29806590_SNP [dm6]	T	G	1.803e^-4	0.776	NON_SYNONYMOUS_CODING ncd UPSTREAM ca	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3R	19571032	3R_19571032_SNP [dm3] 3R_23745310_SNP [dm6]	A	T	1.809e^-4	0.776	INTRON Hmgcr
2R	18278631	2R_18278631_SNP [dm3] 2R_22391126_SNP [dm6]	T	G	1.810e^-4	0.776	SYNONYMOUS_CODING CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2R	19301436	2R_19301436_SNP [dm3] 2R_23413913_SNP [dm6]	T	A	1.810e^-4	0.776	INTRON CG9812
2R	19505709	2R_19505709_SNP [dm3] 2R_23618186_SNP [dm6]	T	A	1.810e^-4	0.776	INTERGENIC
2R	19505712	2R_19505712_SNP [dm3] 2R_23618189_SNP [dm6]	C	T	1.810e^-4	0.776	INTERGENIC
2R	19505715	2R_19505715_SNP [dm3] 2R_23618192_SNP [dm6]	A	C	1.810e^-4	0.776	INTERGENIC
2R	19505767	2R_19505767_SNP [dm3] 2R_23618244_SNP [dm6]	A	T	1.810e^-4	0.776	INTERGENIC
2R	19505775	2R_19505775_SNP [dm3] 2R_23618252_SNP [dm6]	G	A	1.810e^-4	0.776	INTERGENIC
2R	19505782	2R_19505782_SNP [dm3] 2R_23618259_SNP [dm6]	A	G	1.810e^-4	0.776	INTERGENIC
2R	19505796	2R_19505796_SNP [dm3] 2R_23618273_SNP [dm6]	T	C	1.810e^-4	0.776	INTERGENIC
2L	3764709	2L_3764709_SNP [dm3] 2L_3764709_SNP [dm6]	A	G	1.810e^-4	0.776	SYNONYMOUS_CODING CG43707 UPSTREAM CG43703	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19523410	2R_19523410_SNP [dm3] 2R_23635887_SNP [dm6]	A	C	1.819e^-4	0.776	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	2413117	3L_2413117_SNP [dm3] 3L_2413117_SNP [dm6]	A	T	1.820e^-4	0.776	UPSTREAM CG45186 INTRON CG45186
3L	3831373	3L_3831373_SNP [dm3] 3L_3831373_SNP [dm6]	G	A	1.820e^-4	0.776	INTRON enc
X	21303365	X_21303365_SNP [dm3] X_21432338_SNP [dm6]	A	C	1.821e^-4	0.776	INTRON CG42343
3L	16361100	3L_16361100_SNP [dm3] 3L_16368000_SNP [dm6]	A	G	1.828e^-4	0.776	UPSTREAM Cpr72Ec & 1 other INTERGENIC
2R	17069116	2R_17069116_SNP [dm3] 2R_21181611_SNP [dm6]	T	A	1.831e^-4	0.776	DOWNSTREAM tRNA:CR33539 INTRON Pu	TF binding site mE1_TFBS_HSA
2R	17069126	2R_17069126_SNP [dm3] 2R_21181621_SNP [dm6]	T	G	1.831e^-4	0.776	DOWNSTREAM tRNA:CR33539 INTRON Pu	TF binding site mE1_TFBS_HSA
3R	24273819	3R_24273819_SNP [dm3] 3R_28448097_SNP [dm6]	G	A	1.833e^-4	0.776	INTRON beat-VI
3L	2329869	3L_2329869_SNP [dm3] 3L_2329869_SNP [dm6]	C	A	1.838e^-4	0.776	INTRON MsR1
2R	17548431	2R_17548431_SNP [dm3] 2R_21660926_SNP [dm6]	T	C	1.842e^-4	0.776	UPSTREAM Rae1 DOWNSTREAM pirk INTERGENIC
X	18910098	X_18910098_SNP [dm3] X_19016065_SNP [dm6]	C	T	1.843e^-4	0.776	INTRON CG43759	TF binding site mE1_TFBS_HSA
3L	10478484	3L_10478484_SNP [dm3] 3L_10485384_SNP [dm6]	T	A	1.845e^-4	0.776	INTRON A2bp1
3L	10478492	3L_10478492_SNP [dm3] 3L_10485392_SNP [dm6]	C	T	1.845e^-4	0.776	INTRON A2bp1
2R	7648813	2R_7648813_SNP [dm3] 2R_11761308_SNP [dm6]	G	A	1.847e^-4	0.776	INTRON ths
3L	1177943	3L_1177943_SNP [dm3] 3L_1177943_SNP [dm6]	C	A	1.863e^-4	0.776	UPSTREAM bab2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	8876133	3L_8876133_SNP [dm3] 3L_8883033_SNP [dm6]	A	G	1.863e^-4	0.776	INTRON dally
X	793987	X_793987_SNP [dm3] X_899954_SNP [dm6]	G	A	1.865e^-4	0.776	UPSTREAM CG43867 INTRON CG43867	TF binding site BDTNP1_TFBS_z mE1_TFBS_sens
3R	22195444	3R_22195444_SNP [dm3] 3R_26369722_SNP [dm6]	C	A	1.866e^-4	0.776	INTERGENIC
2L	16901349	2L_16901349_SNP [dm3] 2L_16901349_SNP [dm6]	T	G	1.886e^-4	0.776	NON_SYNONYMOUS_CODING CG12288 UPSTREAM CG31805 INTRON tweek	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14793257	2R_14793257_SNP [dm3] 2R_18905752_SNP [dm6]	T	A	1.908e^-4	0.776	INTRON sano
3L	7885846	3L_7885846_SNP [dm3] 3L_7892746_SNP [dm6]	C	A	1.916e^-4	0.776	INTRON CG32365
X	3070316	X_3070316_DEL [dm3] X_3176283_DEL [dm6]	CTT	C	1.923e^-4	0.776	UPSTREAM dnc DOWNSTREAM CG3939 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	15643882	X_15643882_SNP [dm3] X_15749849_SNP [dm6]	A	G	1.926e^-4	0.776	SYNONYMOUS_CODING CG8239 DOWNSTREAM Tcp-1zeta
3R	22542180	3R_22542180_SNP [dm3] 3R_26716458_SNP [dm6]	A	G	1.930e^-4	0.776	NON_SYNONYMOUS_CODING CG6425	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8325701	2L_8325701_SNP [dm3] 2L_8325701_SNP [dm6]	A	T	1.932e^-4	0.776	UPSTREAM CG7781 INTERGENIC
2R	7094721	2R_7094721_SNP [dm3] 2R_11207216_SNP [dm6]	C	T	1.932e^-4	0.776	INTRON shn
X	4988944	X_4988944_DEL [dm3] X_5094911_DEL [dm6]	AT	A	1.937e^-4	0.776	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25971225	3R_25971225_SNP [dm3] 3R_30145503_SNP [dm6]	T	A	1.937e^-4	0.776	INTRON AdoR
3R	18364262	3R_18364262_SNP [dm3] 3R_22538540_SNP [dm6]	T	A	1.944e^-4	0.776	INTRON CG5326
3R	25631732	3R_25631732_SNP [dm3] 3R_29806010_SNP [dm6]	A	G	1.944e^-4	0.776	SYNONYMOUS_CODING ncd UPSTREAM ca	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	21949221	X_21949221_SNP [dm3] X_22547385_SNP [dm6]	A	G	1.949e^-4	0.776	NON_SYNONYMOUS_CODING CG17601
2R	16405055	2R_16405055_SNP [dm3] 2R_20517550_SNP [dm6]	C	A	1.952e^-4	0.776	INTERGENIC
2L	6494636	2L_6494636_SNP [dm3] 2L_6494636_SNP [dm6]	C	T	1.961e^-4	0.776	UPSTREAM CG9547 INTRON CG31638	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	5808573	2L_5808573_SNP [dm3] 2L_5808573_SNP [dm6]	A	G	1.968e^-4	0.776	SYNONYMOUS_CODING CG11034 UTR_3_PRIME CG11034	TF binding site mE1_TFBS_cad
2L	17428278	2L_17428278_SNP [dm3] 2L_17428278_SNP [dm6]	C	T	1.975e^-4	0.776	UPSTREAM Dif INTRON Dif
3R	9057626	3R_9057626_INS [dm3] 3R_13231904_INS [dm6]	G	GC	1.978e^-4	0.776	INTRON Ace
3R	9057661	3R_9057661_INS [dm3] 3R_13231939_INS [dm6]	T	TCTT	1.978e^-4	0.776	INTRON Ace
3R	9057692	3R_9057692_SNP [dm3] 3R_13231970_SNP [dm6]	C	T	1.978e^-4	0.776	INTRON Ace
3L	721246	3L_721246_SNP [dm3] 3L_721246_SNP [dm6]	T	C	1.979e^-4	0.776	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	11775525	2L_11775525_SNP [dm3] 2L_11775525_SNP [dm6]	C	G	1.979e^-4	0.776	INTERGENIC
2R	10711040	2R_10711040_SNP [dm3] 2R_14823535_SNP [dm6]	G	A	1.989e^-4	0.776	DOWNSTREAM CR45329 INTERGENIC
3R	12733386	3R_12733386_SNP [dm3] 3R_16907664_SNP [dm6]	A	G	1.997e^-4	0.776	INTRON iab-8	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	25631774	3R_25631774_SNP [dm3] 3R_29806052_SNP [dm6]	T	C	1.997e^-4	0.776	SYNONYMOUS_CODING ncd UPSTREAM ca	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	9549079	3L_9549079_DEL [dm3] 3L_9555979_DEL [dm6]	GGCGCCCGAAATTTTGTTTT...	G	1.997e^-4	0.776	INTRON CG42673
3R	25115461	3R_25115461_SNP [dm3] 3R_29289739_SNP [dm6]	T	C	1.997e^-4	0.776	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17975621	2R_17975621_SNP [dm3] 2R_22088116_SNP [dm6]	G	A	2.001e^-4	0.776	UPSTREAM CG13502 INTRON CG13502
2R	17975702	2R_17975702_SNP [dm3] 2R_22088197_SNP [dm6]	T	G	2.001e^-4	0.776	UPSTREAM CG13502 INTRON CG13502
2R	16855303	2R_16855303_SNP [dm3] 2R_20967798_SNP [dm6]	G	A	2.010e^-4	0.776	INTERGENIC
3L	5248000	3L_5248000_SNP [dm3] 3L_5254900_SNP [dm6]	G	T	2.015e^-4	0.776	INTRON shep
3R	2693070	3R_2693070_SNP [dm3] 3R_6867348_SNP [dm6]	C	T	2.016e^-4	0.776	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3R	8353869	3R_8353869_SNP [dm3] 3R_12528147_SNP [dm6]	C	A	2.026e^-4	0.776	INTRON Octbeta3R & 1 other
3R	6452769	3R_6452769_SNP [dm3] 3R_10627047_SNP [dm6]	G	T	2.037e^-4	0.776	INTRON hth	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10616788	2R_10616788_SNP [dm3] 2R_14729283_SNP [dm6]	T	A	2.043e^-4	0.776	INTERGENIC
2R	10616796	2R_10616796_SNP [dm3] 2R_14729291_SNP [dm6]	C	A	2.043e^-4	0.776	INTERGENIC
X	13973303	X_13973303_DEL [dm3] X_14079270_DEL [dm6]	AA	A	2.046e^-4	0.776	INTERGENIC
3R	23526187	3R_23526187_SNP [dm3] 3R_27700465_SNP [dm6]	G	A	2.051e^-4	0.776	SPLICE_SITE_ACCEPTOR btz UTR_5_PRIME btz UPSTREAM ALiX INTRON btz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3764703	2L_3764703_SNP [dm3] 2L_3764703_SNP [dm6]	A	C	2.053e^-4	0.776	SYNONYMOUS_CODING CG43707 UPSTREAM CG43703	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	12999825	X_12999825_SNP [dm3] X_13105792_SNP [dm6]	T	A	2.058e^-4	0.776	INTRON CG43313
3L	18195947	3L_18195947_SNP [dm3] 3L_18202847_SNP [dm6]	C	T	2.059e^-4	0.776	NON_SYNONYMOUS_CODING CG7320	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17015505	2L_17015505_SNP [dm3] 2L_17015505_SNP [dm6]	T	G	2.072e^-4	0.776	UPSTREAM CG6304 INTERGENIC	TF binding site mE1_TFBS_inv
2L	17015506	2L_17015506_SNP [dm3] 2L_17015506_SNP [dm6]	G	A	2.072e^-4	0.776	UPSTREAM CG6304 INTERGENIC	TF binding site mE1_TFBS_inv
2L	17015518	2L_17015518_SNP [dm3] 2L_17015518_SNP [dm6]	C	A	2.072e^-4	0.776	UPSTREAM CG6304 INTERGENIC	TF binding site mE1_TFBS_inv
2L	17015521	2L_17015521_SNP [dm3] 2L_17015521_SNP [dm6]	T	A	2.072e^-4	0.776	UPSTREAM CG6304 INTERGENIC	TF binding site mE1_TFBS_inv
X	890696	X_890696_SNP [dm3] X_996663_SNP [dm6]	A	G	2.074e^-4	0.776	INTERGENIC
2L	14796844	2L_14796844_SNP [dm3] 2L_14796844_SNP [dm6]	T	A	2.077e^-4	0.776	UPSTREAM CG18420 INTERGENIC
3R	20713549	3R_20713549_SNP [dm3] 3R_24887827_SNP [dm6]	T	A	2.083e^-4	0.776	INTRON CG31121	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26039010	3R_26039010_SNP [dm3] 3R_30213288_SNP [dm6]	G	A	2.089e^-4	0.776	DOWNSTREAM CecB & 2 others INTERGENIC
3R	26039017	3R_26039017_SNP [dm3] 3R_30213295_SNP [dm6]	T	C	2.089e^-4	0.776	DOWNSTREAM CecB & 2 others INTERGENIC
3R	26039021	3R_26039021_SNP [dm3] 3R_30213299_SNP [dm6]	T	A	2.089e^-4	0.776	DOWNSTREAM CecB & 2 others INTERGENIC
2R	21069050	2R_21069050_SNP [dm3] 2R_25181527_SNP [dm6]	G	T	2.089e^-4	0.776	INTERGENIC
3L	5959947	3L_5959947_SNP [dm3] 3L_5966847_SNP [dm6]	A	G	2.092e^-4	0.776	DOWNSTREAM CG10479 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	8353863	3R_8353863_SNP [dm3] 3R_12528141_SNP [dm6]	A	C	2.104e^-4	0.776	INTRON Octbeta3R & 1 other
2R	19302573	2R_19302573_SNP [dm3] 2R_23415050_SNP [dm6]	C	T	2.105e^-4	0.776	UPSTREAM CG30411 INTRON CG9812	TF binding site mE1_TFBS_chinmo
2L	8326043	2L_8326043_SNP [dm3] 2L_8326043_SNP [dm6]	C	A	2.113e^-4	0.776	UPSTREAM CG7781 INTERGENIC
2L	8326045	2L_8326045_SNP [dm3] 2L_8326045_SNP [dm6]	A	C	2.113e^-4	0.776	UPSTREAM CG7781 INTERGENIC
2L	16069467	2L_16069467_SNP [dm3] 2L_16069467_SNP [dm6]	T	G	2.117e^-4	0.776	INTRON beat-Ia
2R	19558453	2R_19558453_SNP [dm3] 2R_23670930_SNP [dm6]	A	T	2.118e^-4	0.776	INTRON Pde8	TF binding site mE1_TFBS_chinmo
2L	19816618	2L_19816618_SNP [dm3] 2L_19816618_SNP [dm6]	G	A	2.120e^-4	0.776	UPSTREAM snRNA:U2:38ABa DOWNSTREAM snRNA:U5:38ABb INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	19816621	2L_19816621_SNP [dm3] 2L_19816621_SNP [dm6]	A	G	2.120e^-4	0.776	UPSTREAM snRNA:U2:38ABa DOWNSTREAM snRNA:U5:38ABb INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	19816622	2L_19816622_SNP [dm3] 2L_19816622_SNP [dm6]	T	A	2.120e^-4	0.776	UPSTREAM snRNA:U2:38ABa DOWNSTREAM snRNA:U5:38ABb INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	15050746	2R_15050746_SNP [dm3] 2R_19163241_SNP [dm6]	G	T	2.121e^-4	0.776	UTR_3_PRIME ena UPSTREAM CG10737 DOWNSTREAM ena
2R	19459603	2R_19459603_SNP [dm3] 2R_23572080_SNP [dm6]	A	G	2.121e^-4	0.776	INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	8654874	2R_8654874_SNP [dm3] 2R_12767369_SNP [dm6]	G	A	2.135e^-4	0.776	INTERGENIC
2R	8654877	2R_8654877_SNP [dm3] 2R_12767372_SNP [dm6]	G	T	2.135e^-4	0.776	INTERGENIC
2R	8654878	2R_8654878_SNP [dm3] 2R_12767373_SNP [dm6]	C	T	2.135e^-4	0.776	INTERGENIC
2L	11846837	2L_11846837_SNP [dm3] 2L_11846837_SNP [dm6]	T	C	2.138e^-4	0.776	UPSTREAM Mal-B1 INTRON Pde1c
3L	3128123	3L_3128123_SNP [dm3] 3L_3128123_SNP [dm6]	A	G	2.138e^-4	0.776	UTR_3_PRIME CG11537 UPSTREAM prominin-like DOWNSTREAM CG11537	TF binding site BDTNP1_TFBS_dl
3R	26879166	3R_26879166_SNP [dm3] 3R_31053444_SNP [dm6]	T	C	2.147e^-4	0.776	DOWNSTREAM Aph-4 & 1 other INTRON l_3_03670	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	8326051	2L_8326051_DEL [dm3] 2L_8326051_DEL [dm6]	GT	A	2.149e^-4	0.776	UPSTREAM CG7781 INTERGENIC
X	7748941	X_7748941_SNP [dm3] X_7854908_SNP [dm6]	C	T	2.150e^-4	0.776	UPSTREAM CG10920 INTERGENIC
3L	8262561	3L_8262561_SNP [dm3] 3L_8269461_SNP [dm6]	G	A	2.153e^-4	0.776	INTRON Dscam4
3L	5032514	3L_5032514_SNP [dm3] 3L_5032514_SNP [dm6]	A	T	2.154e^-4	0.776	INTRON Con	TF binding site mE1_TFBS_inv
2L	2679897	2L_2679897_SNP [dm3] 2L_2679897_SNP [dm6]	A	G	2.165e^-4	0.776	INTRON CG31690
X	12873902	X_12873902_SNP [dm3] X_12979869_SNP [dm6]	T	A	2.165e^-4	0.776	INTERGENIC
2L	488614	2L_488614_SNP [dm3] 2L_488614_SNP [dm6]	C	T	2.165e^-4	0.776	INTRON ush	TF binding site mE1_TFBS_Trl
2R	15737399	2R_15737399_SNP [dm3] 2R_19849894_SNP [dm6]	A	G	2.168e^-4	0.776	INTERGENIC
3L	3293974	3L_3293974_INS [dm3] 3L_3293974_INS [dm6]	T	TAT	2.169e^-4	0.776	UPSTREAM CG12009 INTRON CG12009
2L	10177813	2L_10177813_SNP [dm3] 2L_10177813_SNP [dm6]	A	G	2.178e^-4	0.776	INTRON CG44153
X	13637972	X_13637972_INS [dm3] X_13743939_INS [dm6]	A	ACTTTGTATGCTGTTTGGCA...	2.182e^-4	0.776	UPSTREAM CR42861 INTRON Grip91	TF binding site BDTNP1_TFBS_dl
X	13637981	X_13637981_SNP [dm3] X_13743948_SNP [dm6]	A	G	2.182e^-4	0.776	UPSTREAM CR42861 INTRON Grip91	TF binding site BDTNP1_TFBS_dl
2L	1734889	2L_1734889_SNP [dm3] 2L_1734889_SNP [dm6]	C	T	2.183e^-4	0.776	INTRON CG17646
3L	7946757	3L_7946757_SNP [dm3] 3L_7953657_SNP [dm6]	A	T	2.184e^-4	0.776	INTERGENIC	TF binding site mE1_TFBS_cad
3R	25994427	3R_25994427_SNP [dm3] 3R_30168705_SNP [dm6]	A	T	2.184e^-4	0.776	SYNONYMOUS_CODING CG31028
3L	3000990	3L_3000990_SNP [dm3] 3L_3000990_SNP [dm6]	T	A	2.190e^-4	0.776	UPSTREAM FMRFaR INTERGENIC
X	17912028	X_17912028_DEL [dm3] X_18017995_DEL [dm6]	AACTA	A	2.203e^-4	0.776	INTRON Sh
3L	3701867	3L_3701867_SNP [dm3] 3L_3701867_SNP [dm6]	T	C	2.207e^-4	0.776	INTERGENIC
3L	18198369	3L_18198369_SNP [dm3] 3L_18205269_SNP [dm6]	C	G	2.211e^-4	0.776	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9057680	3R_9057680_SNP [dm3] 3R_13231958_SNP [dm6]	T	G	2.218e^-4	0.776	INTRON Ace
3R	9057854	3R_9057854_SNP [dm3] 3R_13232132_SNP [dm6]	C	A	2.218e^-4	0.776	INTRON Ace
2R	17069103	2R_17069103_SNP [dm3] 2R_21181598_SNP [dm6]	T	A	2.234e^-4	0.776	DOWNSTREAM tRNA:CR33539 INTRON Pu	TF binding site mE1_TFBS_HSA
2R	11722627	2R_11722627_SNP [dm3] 2R_15835122_SNP [dm6]	A	G	2.240e^-4	0.776	UPSTREAM Poxn INTRON tun	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	16538185	3R_16538185_SNP [dm3] 3R_20712463_SNP [dm6]	G	C	2.245e^-4	0.776	INTRON Oamb
3R	23652198	3R_23652198_SNP [dm3] 3R_27826476_SNP [dm6]	C	G	2.259e^-4	0.776	INTRON CG34353	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	23652199	3R_23652199_SNP [dm3] 3R_27826477_SNP [dm6]	T	A	2.259e^-4	0.776	INTRON CG34353	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	23652204	3R_23652204_SNP [dm3] 3R_27826482_SNP [dm6]	G	A	2.259e^-4	0.776	INTRON CG34353	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	10987051	3L_10987051_SNP [dm3] 3L_10993951_SNP [dm6]	A	C	2.260e^-4	0.776	INTRON klu	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8877767	3L_8877767_SNP [dm3] 3L_8884667_SNP [dm6]	A	G	2.261e^-4	0.776	INTRON dally
2R	18624422	2R_18624422_DEL [dm3] 2R_22736917_DEL [dm6]	TGATCGGGAGAAATGGATAG...	T	2.264e^-4	0.776	SPLICE_SITE_REGION jbug UTR_5_PRIME jbug INTRON jbug
3L	16264508	3L_16264508_SNP [dm3] 3L_16271408_SNP [dm6]	T	A	2.265e^-4	0.776	UPSTREAM CG34248 INTRON CG13067	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	11308760	X_11308760_SNP [dm3] X_11414727_SNP [dm6]	G	A	2.267e^-4	0.776	SYNONYMOUS_CODING Gr10a DOWNSTREAM Or10a	TF binding site BDTNP1_TFBS_da
3R	8911466	3R_8911466_SNP [dm3] 3R_13085744_SNP [dm6]	G	C	2.271e^-4	0.776	UPSTREAM CG43063 EXON CR44967
X	2823940	X_2823940_SNP [dm3] X_2929907_SNP [dm6]	A	C	2.272e^-4	0.776	UTR_5_PRIME CG32793 INTRON kirre
2R	10259634	2R_10259634_SNP [dm3] 2R_14372129_SNP [dm6]	T	G	2.284e^-4	0.776	UTR_5_PRIME Obp50c UTR_3_PRIME Obp50b UPSTREAM Obp50d	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	23526080	3R_23526080_SNP [dm3] 3R_27700358_SNP [dm6]	T	C	2.285e^-4	0.776	UPSTREAM btz & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	6295596	2R_6295596_SNP [dm3] 2R_10408091_SNP [dm6]	G	T	2.293e^-4	0.776	UPSTREAM CG12898 DOWNSTREAM CG43177 INTRON CG42732
3L	1452660	3L_1452660_SNP [dm3] 3L_1452660_SNP [dm6]	G	T	2.295e^-4	0.776	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo
2R	7710377	2R_7710377_SNP [dm3] 2R_11822872_SNP [dm6]	G	A	2.296e^-4	0.776	INTERGENIC
2R	9483374	2R_9483374_SNP [dm3] 2R_13595869_SNP [dm6]	T	A	2.302e^-4	0.776	UPSTREAM S-Lap5 INTRON CG6197
2R	7367655	2R_7367655_SNP [dm3] 2R_11480150_SNP [dm6]	T	A	2.311e^-4	0.776	INTRON inv
3R	25635522	3R_25635522_SNP [dm3] 3R_29809800_SNP [dm6]	C	T	2.315e^-4	0.776	SYNONYMOUS_CODING ca	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	5617886	2L_5617886_INS [dm3] 2L_5617886_INS [dm6]	T	TAGCA	2.329e^-4	0.776	UTR_5_PRIME CG14010	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5617896	2L_5617896_DEL [dm3] 2L_5617896_DEL [dm6]	TT	T	2.329e^-4	0.776	UTR_5_PRIME CG14010	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5617955	2L_5617955_SNP [dm3] 2L_5617955_SNP [dm6]	T	A	2.329e^-4	0.776	UPSTREAM CG14010 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5643718	2L_5643718_SNP [dm3] 2L_5643718_SNP [dm6]	G	A	2.330e^-4	0.776	INTRON CG31646	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13420276	3R_13420276_SNP [dm3] 3R_17594554_SNP [dm6]	T	C	2.332e^-4	0.776	SYNONYMOUS_CODING CG7587 UPSTREAM Sgs5
3R	3942329	3R_3942329_SNP [dm3] 3R_8116607_SNP [dm6]	C	T	2.333e^-4	0.776	INTRON puc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23297770	3R_23297770_SNP [dm3] 3R_27472048_SNP [dm6]	G	T	2.333e^-4	0.776	INTERGENIC
X	2717531	X_2717531_SNP [dm3] X_2823498_SNP [dm6]	A	G	2.336e^-4	0.776	INTRON kirre
3L	4025783	3L_4025783_SNP [dm3] 3L_4025783_SNP [dm6]	T	A	2.339e^-4	0.776	UTR_5_PRIME CG11594 UPSTREAM CG11594 & 1 other INTRON CG11594
3L	4141896	3L_4141896_SNP [dm3] 3L_4141896_SNP [dm6]	A	G	2.350e^-4	0.776	UTR_3_PRIME Akh UPSTREAM CG32260 DOWNSTREAM Ras64B
2L	11200815	2L_11200815_SNP [dm3] 2L_11200815_SNP [dm6]	A	T	2.352e^-4	0.776	INTRON Ca-beta
3R	3449951	3R_3449951_SNP [dm3] 3R_7624229_SNP [dm6]	C	T	2.354e^-4	0.776	INTRON CG34127
3R	23820896	3R_23820896_SNP [dm3] 3R_27995174_SNP [dm6]	T	A	2.354e^-4	0.776	INTERGENIC
2L	16802940	2L_16802940_SNP [dm3] 2L_16802940_SNP [dm6]	A	G	2.376e^-4	0.776	SYNONYMOUS_CODING CG13280	TF binding site mE1_TFBS_chinmo
2L	6662096	2L_6662096_SNP [dm3] 2L_6662096_SNP [dm6]	T	A	2.386e^-4	0.776	UTR_3_PRIME CG13771 DOWNSTREAM CG11070	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sbb
2L	6662129	2L_6662129_SNP [dm3] 2L_6662129_SNP [dm6]	C	G	2.386e^-4	0.776	NON_SYNONYMOUS_CODING CG13771 UTR_3_PRIME CG13771 DOWNSTREAM CG11070	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sbb
2L	6662143	2L_6662143_SNP [dm3] 2L_6662143_SNP [dm6]	T	C	2.386e^-4	0.776	NON_SYNONYMOUS_CODING CG13771 UTR_3_PRIME CG13771 DOWNSTREAM CG11070	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sbb
2R	17438998	2R_17438998_SNP [dm3] 2R_21551493_SNP [dm6]	A	G	2.386e^-4	0.776	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	26038965	3R_26038965_SNP [dm3] 3R_30213243_SNP [dm6]	T	A	2.389e^-4	0.776	DOWNSTREAM CecB & 2 others INTERGENIC
3R	23167724	3R_23167724_SNP [dm3] 3R_27342002_SNP [dm6]	A	C	2.402e^-4	0.776	INTRON CG42534
X	787176	X_787176_SNP [dm3] X_893143_SNP [dm6]	G	A	2.412e^-4	0.776	INTRON CG43867	TF binding site mE1_TFBS_chinmo
3R	25115974	3R_25115974_SNP [dm3] 3R_29290252_SNP [dm6]	G	A	2.417e^-4	0.776	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	25115975	3R_25115975_SNP [dm3] 3R_29290253_SNP [dm6]	C	T	2.417e^-4	0.776	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	3391318	2L_3391318_SNP [dm3] 2L_3391318_SNP [dm6]	T	A	2.422e^-4	0.776	INTERGENIC
2R	9528247	2R_9528247_DEL [dm3] 2R_13640742_DEL [dm6]	GTA	G	2.435e^-4	0.776	INTRON fas
2L	7632475	2L_7632475_DEL [dm3] 2L_7632475_DEL [dm6]	TT	T	2.456e^-4	0.776	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8932225	2R_8932225_SNP [dm3] 2R_13044720_SNP [dm6]	A	G	2.458e^-4	0.776	UTR_3_PRIME CG13323	TF binding site BDTNP1_TFBS_da
2L	6857924	2L_6857924_SNP [dm3] 2L_6857924_SNP [dm6]	G	A	2.461e^-4	0.776	SYNONYMOUS_CODING l_2_k09022	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6857933	2L_6857933_SNP [dm3] 2L_6857933_SNP [dm6]	C	T	2.461e^-4	0.776	SYNONYMOUS_CODING l_2_k09022	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11721680	2R_11721680_SNP [dm3] 2R_15834175_SNP [dm6]	C	T	2.462e^-4	0.776	INTRON tun & 1 other	regulatory region REDfly_CRMs
2R	11145456	2R_11145456_SNP [dm3] 2R_15257951_SNP [dm6]	C	T	2.465e^-4	0.776	UTR_3_PRIME scb UPSTREAM ItgalphaPS4
3L	3291584	3L_3291584_SNP [dm3] 3L_3291584_SNP [dm6]	G	T	2.465e^-4	0.776	UTR_5_PRIME CG12009 DOWNSTREAM CG12017
2R	10104222	2R_10104222_SNP [dm3] 2R_14216717_SNP [dm6]	A	T	2.469e^-4	0.776	UPSTREAM mir-308 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3L	3003356	3L_3003356_SNP [dm3] 3L_3003356_SNP [dm6]	G	T	2.470e^-4	0.776	UPSTREAM FMRFaR INTRON FMRFaR
X	3798203	X_3798203_SNP [dm3] X_3904170_SNP [dm6]	T	A	2.470e^-4	0.776	SYNONYMOUS_CODING CG42541
3R	9057340	3R_9057340_SNP [dm3] 3R_13231618_SNP [dm6]	A	G	2.472e^-4	0.776	INTRON Ace
3R	6458367	3R_6458367_SNP [dm3] 3R_10632645_SNP [dm6]	G	A	2.476e^-4	0.776	INTRON hth	TF binding site mE1_TFBS_cad
2L	3314653	2L_3314653_SNP [dm3] 2L_3314653_SNP [dm6]	T	C	2.476e^-4	0.776	INTRON CG3277
3R	26855793	3R_26855793_SNP [dm3] 3R_31030071_SNP [dm6]	G	T	2.476e^-4	0.776	INTERGENIC
3R	23018851	3R_23018851_SNP [dm3] 3R_27193129_SNP [dm6]	A	C	2.481e^-4	0.776	INTRON Ser	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	25115650	3R_25115650_SNP [dm3] 3R_29289928_SNP [dm6]	T	C	2.487e^-4	0.776	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8932254	2R_8932254_SNP [dm3] 2R_13044749_SNP [dm6]	T	C	2.489e^-4	0.776	UTR_3_PRIME CG13323	TF binding site BDTNP1_TFBS_da
2L	9201036	2L_9201036_INS [dm3] 2L_9201036_INS [dm6]	T	TCGTTGCAC	2.494e^-4	0.776	INTRON tai
2L	14109706	2L_14109706_SNP [dm3] 2L_14109706_SNP [dm6]	C	T	2.503e^-4	0.776	NON_SYNONYMOUS_CODING CG31769 UPSTREAM CG15293
3R	15188212	3R_15188212_SNP [dm3] 3R_19362490_SNP [dm6]	G	A	2.514e^-4	0.776	INTERGENIC
3L	4018534	3L_4018534_INS [dm3] 3L_4018534_INS [dm6]	T	TT	2.523e^-4	0.776	UPSTREAM fd64A INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	13403711	3L_13403711_SNP [dm3] 3L_13410611_SNP [dm6]	T	C	2.535e^-4	0.776	DOWNSTREAM CG10222 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1
3R	10369470	3R_10369470_SNP [dm3] 3R_14543748_SNP [dm6]	C	G	2.539e^-4	0.776	INTRON Pde6
3R	12422051	3R_12422051_SNP [dm3] 3R_16596329_SNP [dm6]	G	A	2.540e^-4	0.776	NON_SYNONYMOUS_CODING CG14892 DOWNSTREAM CG10345	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	2653200	3L_2653200_SNP [dm3] 3L_2653200_SNP [dm6]	C	T	2.541e^-4	0.776	UTR_5_PRIME CG42304 UTR_3_PRIME Snup UPSTREAM CG42304
2R	10616733	2R_10616733_SNP [dm3] 2R_14729228_SNP [dm6]	T	C	2.551e^-4	0.776	INTERGENIC
3R	6440982	3R_6440982_SNP [dm3] 3R_10615260_SNP [dm6]	T	C	2.553e^-4	0.776	UPSTREAM hth INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10103992	2R_10103992_SNP [dm3] 2R_14216487_SNP [dm6]	G	T	2.554e^-4	0.776	UPSTREAM mir-308 INTRON RpS23	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
2R	19558469	2R_19558469_SNP [dm3] 2R_23670946_SNP [dm6]	T	A	2.556e^-4	0.776	INTRON Pde8
X	669021	X_669021_SNP [dm3] X_774988_SNP [dm6]	T	A	2.560e^-4	0.776	INTRON fz3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	7586845	2L_7586845_SNP [dm3] 2L_7586845_SNP [dm6]	T	G	2.561e^-4	0.776	INTERGENIC
2L	5926908	2L_5926908_SNP [dm3] 2L_5926908_SNP [dm6]	C	T	2.565e^-4	0.776	UPSTREAM CR43926 INTRON dsf
2L	5926927	2L_5926927_SNP [dm3] 2L_5926927_SNP [dm6]	A	C	2.565e^-4	0.776	UPSTREAM CR43926 INTRON dsf
3R	6396153	3R_6396153_SNP [dm3] 3R_10570431_SNP [dm6]	G	C	2.567e^-4	0.776	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	2695937	3R_2695937_SNP [dm3] 3R_6870215_SNP [dm6]	A	G	2.568e^-4	0.776	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_sens
3L	3653147	3L_3653147_SNP [dm3] 3L_3653147_SNP [dm6]	T	C	2.602e^-4	0.776	UTR_3_PRIME dar1 DOWNSTREAM CG10862
3R	9024549	3R_9024549_SNP [dm3] 3R_13198827_SNP [dm6]	A	T	2.604e^-4	0.776	INTERGENIC
2R	9145105	2R_9145105_SNP [dm3] 2R_13257600_SNP [dm6]	T	A	2.605e^-4	0.776	UPSTREAM CG10799 DOWNSTREAM CG4716 INTERGENIC
2R	9145114	2R_9145114_SNP [dm3] 2R_13257609_SNP [dm6]	A	G	2.605e^-4	0.776	UPSTREAM CG10799 DOWNSTREAM CG4716 INTERGENIC
2R	9145119	2R_9145119_SNP [dm3] 2R_13257614_SNP [dm6]	T	A	2.605e^-4	0.776	UPSTREAM CG10799 DOWNSTREAM CG4716 INTERGENIC
2R	9145133	2R_9145133_INS [dm3] 2R_13257628_INS [dm6]	CAC	AGTG	2.605e^-4	0.776	UPSTREAM CG10799 DOWNSTREAM CG4716 INTERGENIC
2R	9145139	2R_9145139_INS [dm3] 2R_13257634_INS [dm6]	AC	GGTGA	2.605e^-4	0.776	UPSTREAM CG10799 DOWNSTREAM CG4716 INTERGENIC
2R	9145142	2R_9145142_SNP [dm3] 2R_13257637_SNP [dm6]	T	C	2.605e^-4	0.776	UPSTREAM CG10799 DOWNSTREAM CG4716 INTERGENIC
2R	9145159	2R_9145159_SNP [dm3] 2R_13257654_SNP [dm6]	T	G	2.605e^-4	0.776	UPSTREAM CG10799 DOWNSTREAM CG4716 INTERGENIC
X	10982781	X_10982781_SNP [dm3] X_11088748_SNP [dm6]	T	A	2.610e^-4	0.776	UPSTREAM Vago DOWNSTREAM CR45604 INTERGENIC
3L	15457935	3L_15457935_SNP [dm3] 3L_15464835_SNP [dm6]	G	T	2.612e^-4	0.776	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8989791	3R_8989791_SNP [dm3] 3R_13164069_SNP [dm6]	T	C	2.612e^-4	0.776	DOWNSTREAM timeout INTERGENIC
2R	14225537	2R_14225537_SNP [dm3] 2R_18338032_SNP [dm6]	A	G	2.623e^-4	0.776	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15644017	X_15644017_SNP [dm3] X_15749984_SNP [dm6]	C	T	2.623e^-4	0.776	INTRON CG8239
3L	3479768	3L_3479768_SNP [dm3] 3L_3479768_SNP [dm6]	G	A	2.628e^-4	0.776	INTRON CG42324
2L	6466272	2L_6466272_SNP [dm3] 2L_6466272_SNP [dm6]	G	A	2.628e^-4	0.776	UTR_3_PRIME CG9531 UPSTREAM CG16947 DOWNSTREAM CG9531
2L	7586847	2L_7586847_SNP [dm3] 2L_7586847_SNP [dm6]	C	T	2.629e^-4	0.776	INTERGENIC
2R	9145182	2R_9145182_SNP [dm3] 2R_13257677_SNP [dm6]	A	C	2.636e^-4	0.776	UPSTREAM CG10799 DOWNSTREAM CG4716 INTERGENIC
X	5445292	X_5445292_INS [dm3] X_5551259_INS [dm6]	A	ACATA	2.636e^-4	0.776	INTRON Vsx2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	13962837	2L_13962837_SNP [dm3] 2L_13962837_SNP [dm6]	T	A	2.654e^-4	0.776	UTR_3_PRIME NimA UPSTREAM NimB1
3L	1452448	3L_1452448_SNP [dm3] 3L_1452448_SNP [dm6]	C	G	2.656e^-4	0.776	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo
3L	1452591	3L_1452591_SNP [dm3] 3L_1452591_SNP [dm6]	T	C	2.656e^-4	0.776	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo
3R	19508127	3R_19508127_SNP [dm3] 3R_23682405_SNP [dm6]	T	C	2.660e^-4	0.776	UPSTREAM CG16710 DOWNSTREAM eIF-3p66 INTERGENIC	TF binding site mE1_TFBS_cad
2R	19517750	2R_19517750_DEL [dm3] 2R_23630227_DEL [dm6]	TACTAGCATCGGTTT...	T	2.677e^-4	0.776	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	24473502	3R_24473502_SNP [dm3] 3R_28647780_SNP [dm6]	T	G	2.679e^-4	0.776	INTERGENIC
2R	10890500	2R_10890500_SNP [dm3] 2R_15002995_SNP [dm6]	G	C	2.679e^-4	0.776	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	11221088	3L_11221088_SNP [dm3] 3L_11227988_SNP [dm6]	G	A	2.690e^-4	0.776	UTR_3_PRIME CG42671 INTRON CG42671	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3759125	2L_3759125_SNP [dm3] 2L_3759125_SNP [dm6]	C	T	2.696e^-4	0.776	SYNONYMOUS_CODING CG43707 UTR_5_PRIME CG43707 UPSTREAM CG43707
X	1835772	X_1835772_DEL [dm3] X_1941739_DEL [dm6]	TT	T	2.700e^-4	0.776	UPSTREAM Hr4 DOWNSTREAM CG3587 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	21710432	2L_21710432_SNP [dm3] 2L_21710432_SNP [dm6]	C	T	2.706e^-4	0.776	INTRON CG31619	TF binding site BDTNP1_TFBS_prd
X	13638025	X_13638025_SNP [dm3] X_13743992_SNP [dm6]	T	A	2.731e^-4	0.776	UPSTREAM CR42861 INTRON Grip91	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	11128445	3R_11128445_SNP [dm3] 3R_15302723_SNP [dm6]	A	C	2.731e^-4	0.776	INTRON Tm1
3L	1649806	3L_1649806_SNP [dm3] 3L_1649806_SNP [dm6]	C	T	2.744e^-4	0.776	INTRON CG13920
3L	1649808	3L_1649808_SNP [dm3] 3L_1649808_SNP [dm6]	A	C	2.744e^-4	0.776	INTRON CG13920
3R	12723959	3R_12723959_SNP [dm3] 3R_16898237_SNP [dm6]	A	G	2.745e^-4	0.776	DOWNSTREAM CR43617 INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Trl
2R	10249447	2R_10249447_SNP [dm3] 2R_14361942_SNP [dm6]	T	C	2.747e^-4	0.776	UTR_5_PRIME Arc2 UPSTREAM CR10102
3L	1173343	3L_1173343_SNP [dm3] 3L_1173343_SNP [dm6]	T	C	2.753e^-4	0.776	SYNONYMOUS_CODING bab2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3277500	3L_3277500_SNP [dm3] 3L_3277500_SNP [dm6]	C	T	2.755e^-4	0.776	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	9478355	2R_9478355_SNP [dm3] 2R_13590850_SNP [dm6]	C	T	2.766e^-4	0.776	NON_SYNONYMOUS_CODING CG6191 UTR_3_PRIME CG45088	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15905760	X_15905760_SNP [dm3] X_16011727_SNP [dm6]	G	A	2.767e^-4	0.776	SYNONYMOUS_CODING Muc14A	TF binding site mE1_TFBS_sens
3R	25416695	3R_25416695_SNP [dm3] 3R_29590973_SNP [dm6]	T	A	2.772e^-4	0.776	UPSTREAM alph & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	18536981	3R_18536981_SNP [dm3] 3R_22711259_SNP [dm6]	T	A	2.777e^-4	0.776	UTR_3_PRIME wge UPSTREAM CG4907 DOWNSTREAM wge
2R	10264871	2R_10264871_SNP [dm3] 2R_14377366_SNP [dm6]	G	A	2.778e^-4	0.776	UPSTREAM Dh44-R1 DOWNSTREAM CG30075 INTERGENIC
3L	2744849	3L_2744849_SNP [dm3] 3L_2744849_SNP [dm6]	T	A	2.783e^-4	0.776	INTRON Mrtf
3L	14069154	3L_14069154_SNP [dm3] 3L_14076054_SNP [dm6]	A	T	2.783e^-4	0.776	SPLICE_SITE_REGION btl UTR_3_PRIME Pex1 INTRON btl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	13073190	2L_13073190_DEL [dm3] 2L_13073190_DEL [dm6]	ACCCCTCAT	A	2.795e^-4	0.776	INTERGENIC
3L	6321710	3L_6321710_SNP [dm3] 3L_6328610_SNP [dm6]	T	A	2.795e^-4	0.776	SYNONYMOUS_CODING Or65c DOWNSTREAM CG13300
3R	12723952	3R_12723952_SNP [dm3] 3R_16898230_SNP [dm6]	C	T	2.808e^-4	0.776	DOWNSTREAM CR43617 INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Trl
2L	2679425	2L_2679425_SNP [dm3] 2L_2679425_SNP [dm6]	C	T	2.812e^-4	0.776	INTRON CG31690
2L	2679438	2L_2679438_SNP [dm3] 2L_2679438_SNP [dm6]	A	T	2.812e^-4	0.776	INTRON CG31690
2L	13074704	2L_13074704_SNP [dm3] 2L_13074704_SNP [dm6]	C	T	2.823e^-4	0.776	INTERGENIC
3R	6430491	3R_6430491_SNP [dm3] 3R_10604769_SNP [dm6]	T	C	2.826e^-4	0.776	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10802816	2R_10802816_SNP [dm3] 2R_14915311_SNP [dm6]	T	C	2.831e^-4	0.776	INTRON CG10249
X	5086677	X_5086677_SNP [dm3] X_5192644_SNP [dm6]	A	G	2.831e^-4	0.776	INTRON rg & 1 other	TF binding site mE1_TFBS_Trl
3L	4635191	3L_4635191_SNP [dm3] 3L_4635191_SNP [dm6]	G	A	2.832e^-4	0.776	UPSTREAM CG13716 INTRON axo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6458978	3R_6458978_SNP [dm3] 3R_10633256_SNP [dm6]	T	C	2.833e^-4	0.776	INTRON hth	TF binding site mE1_TFBS_chinmo
3L	1400192	3L_1400192_MNP [dm3] 3L_1400192_MNP [dm6]	ACA	CTT	2.849e^-4	0.776	INTRON Ptp61F & 1 other
3L	3290920	3L_3290920_SNP [dm3] 3L_3290920_SNP [dm6]	T	A	2.857e^-4	0.776	UPSTREAM CG12009 DOWNSTREAM CG12017 INTERGENIC
3L	2135559	3L_2135559_SNP [dm3] 3L_2135559_SNP [dm6]	A	C	2.862e^-4	0.776	SYNONYMOUS_CODING zormin	TF binding site mE1_TFBS_chinmo
2L	3314834	2L_3314834_SNP [dm3] 2L_3314834_SNP [dm6]	G	A	2.865e^-4	0.776	INTRON CG3277
3R	22193849	3R_22193849_SNP [dm3] 3R_26368127_SNP [dm6]	T	C	2.870e^-4	0.776	INTERGENIC
2R	9360975	2R_9360975_SNP [dm3] 2R_13473470_SNP [dm6]	C	T	2.882e^-4	0.776	INTRON arr
2R	14116152	2R_14116152_SNP [dm3] 2R_18228647_SNP [dm6]	A	T	2.886e^-4	0.776	DOWNSTREAM CR45310 EXON CR45311
2R	14116159	2R_14116159_SNP [dm3] 2R_18228654_SNP [dm6]	T	A	2.886e^-4	0.776	DOWNSTREAM CR45310 EXON CR45311
X	13972281	X_13972281_SNP [dm3] X_14078248_SNP [dm6]	A	G	2.894e^-4	0.776	INTERGENIC
3L	2530937	3L_2530937_SNP [dm3] 3L_2530937_SNP [dm6]	T	C	2.905e^-4	0.776	INTRON Spn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
X	6544562	X_6544562_SNP [dm3] X_6650529_SNP [dm6]	T	G	2.908e^-4	0.776	UTR_3_PRIME pigs	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	23297899	3R_23297899_SNP [dm3] 3R_27472177_SNP [dm6]	C	A	2.910e^-4	0.776	INTERGENIC
X	17433254	X_17433254_SNP [dm3] X_17539221_SNP [dm6]	G	T	2.917e^-4	0.776	INTRON CG43658
2R	18624245	2R_18624245_SNP [dm3] 2R_22736740_SNP [dm6]	A	T	2.930e^-4	0.776	SYNONYMOUS_CODING jbug
3L	2818497	3L_2818497_SNP [dm3] 3L_2818497_SNP [dm6]	C	A	2.943e^-4	0.776	INTRON CG43444
2L	4794851	2L_4794851_SNP [dm3] 2L_4794851_SNP [dm6]	G	A	2.945e^-4	0.776	NON_SYNONYMOUS_CODING CG3294 UPSTREAM CG15630	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	9231397	2R_9231397_SNP [dm3] 2R_13343892_SNP [dm6]	G	A	2.952e^-4	0.776	INTRON CR44206
2R	17438996	2R_17438996_SNP [dm3] 2R_21551491_SNP [dm6]	C	T	2.953e^-4	0.776	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	20870443	2R_20870443_DEL [dm3] 2R_24982920_DEL [dm6]	TCT	T	2.955e^-4	0.776	INTRON emp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	13638015	X_13638015_SNP [dm3] X_13743982_SNP [dm6]	G	C	2.956e^-4	0.776	UPSTREAM CR42861 INTRON Grip91	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
X	13638018	X_13638018_SNP [dm3] X_13743985_SNP [dm6]	T	C	2.956e^-4	0.776	UPSTREAM CR42861 INTRON Grip91	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	11303279	X_11303279_DEL [dm3] X_11409246_DEL [dm6]	ATACA	A	2.958e^-4	0.776	UTR_3_PRIME dlg1 UPSTREAM CG15196 DOWNSTREAM dlg1
X	4698974	X_4698974_SNP [dm3] X_4804941_SNP [dm6]	A	C	2.958e^-4	0.776	UPSTREAM CG2861 DOWNSTREAM CR45516 INTERGENIC
3R	8393437	3R_8393437_SNP [dm3] 3R_12567715_SNP [dm6]	G	A	2.962e^-4	0.776	INTRON Octbeta2R
3L	5053829	3L_5053829_SNP [dm3] 3L_5053829_SNP [dm6]	C	T	2.968e^-4	0.776	INTRON Con
3L	4141869	3L_4141869_SNP [dm3] 3L_4141869_SNP [dm6]	T	C	2.975e^-4	0.776	SYNONYMOUS_CODING Akh UPSTREAM CG32260 DOWNSTREAM Ras64B
3R	6430470	3R_6430470_SNP [dm3] 3R_10604748_SNP [dm6]	A	C	2.990e^-4	0.776	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	20993101	2L_20993101_SNP [dm3] 2L_20993101_SNP [dm6]	G	A	2.996e^-4	0.776	INTRON CG42238
2L	5508215	2L_5508215_SNP [dm3] 2L_5508215_SNP [dm6]	C	A	2.997e^-4	0.776	INTERGENIC
2R	2589707	2R_2589707_SNP [dm3] 2R_6702202_SNP [dm6]	T	C	2.997e^-4	0.776	INTRON CG3409 & 1 other	TF binding site mE1_TFBS_cad
3R	18713291	3R_18713291_SNP [dm3] 3R_22887569_SNP [dm6]	G	C	3.005e^-4	0.776	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7586785	2L_7586785_SNP [dm3] 2L_7586785_SNP [dm6]	T	C	3.006e^-4	0.776	INTERGENIC
3R	7187651	3R_7187651_INS [dm3] 3R_11361929_INS [dm6]	T	TG	3.008e^-4	0.776	INTRON pros	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	4025782	3L_4025782_SNP [dm3] 3L_4025782_SNP [dm6]	T	G	3.012e^-4	0.776	UTR_5_PRIME CG11594 UPSTREAM CG11594 & 1 other INTRON CG11594
3L	9753099	3L_9753099_DEL [dm3] 3L_9759999_DEL [dm6]	GC	G	3.013e^-4	0.776	UTR_5_PRIME CG42268 UPSTREAM CR45407 INTRON CG42268
3R	23297828	3R_23297828_SNP [dm3] 3R_27472106_SNP [dm6]	A	T	3.031e^-4	0.776	INTERGENIC
3R	23297886	3R_23297886_SNP [dm3] 3R_27472164_SNP [dm6]	G	C	3.031e^-4	0.776	INTERGENIC
3R	26054736	3R_26054736_DEL [dm3] 3R_30229014_DEL [dm6]	AA	A	3.046e^-4	0.776	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	14110174	2L_14110174_SNP [dm3] 2L_14110174_SNP [dm6]	C	G	3.056e^-4	0.776	NON_SYNONYMOUS_CODING CG31769 UPSTREAM CG15293
3R	25504010	3R_25504010_SNP [dm3] 3R_29678288_SNP [dm6]	T	C	3.061e^-4	0.776	SYNONYMOUS_CODING Cap-D2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13922799	2R_13922799_SNP [dm3] 2R_18035294_SNP [dm6]	A	G	3.066e^-4	0.776	INTERGENIC
2R	1763480	2R_1763480_SNP [dm3] 2R_5875975_SNP [dm6]	C	T	3.070e^-4	0.776	INTERGENIC
2L	20424981	2L_20424981_SNP [dm3] 2L_20424981_SNP [dm6]	G	A	3.074e^-4	0.776	UPSTREAM CG15130 INTERGENIC
2L	13300620	2L_13300620_SNP [dm3] 2L_13300620_SNP [dm6]	C	T	3.076e^-4	0.776	SYNONYMOUS_CODING CG31729
2L	13301067	2L_13301067_SNP [dm3] 2L_13301067_SNP [dm6]	T	C	3.076e^-4	0.776	UTR_3_PRIME CG31729 DOWNSTREAM CG43778
2L	6705878	2L_6705878_SNP [dm3] 2L_6705878_SNP [dm6]	A	T	3.078e^-4	0.776	INTRON Tsp
3L	3291421	3L_3291421_SNP [dm3] 3L_3291421_SNP [dm6]	C	T	3.080e^-4	0.776	UPSTREAM CG12009 DOWNSTREAM CG12017 INTERGENIC
3L	10477392	3L_10477392_SNP [dm3] 3L_10484292_SNP [dm6]	A	G	3.080e^-4	0.776	INTRON A2bp1
3R	19225612	3R_19225612_SNP [dm3] 3R_23399890_SNP [dm6]	A	G	3.084e^-4	0.776	UPSTREAM CR44323 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	11557548	3L_11557548_SNP [dm3] 3L_11564448_SNP [dm6]	A	G	3.085e^-4	0.776	UPSTREAM CG33267 DOWNSTREAM CG7394 INTERGENIC
X	3741071	X_3741071_SNP [dm3] X_3847038_SNP [dm6]	A	G	3.087e^-4	0.776	INTRON ec	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
3R	19080928	3R_19080928_SNP [dm3] 3R_23255206_SNP [dm6]	C	A	3.092e^-4	0.776	UTR_3_PRIME wda DOWNSTREAM EloA
3R	8934649	3R_8934649_SNP [dm3] 3R_13108927_SNP [dm6]	G	C	3.096e^-4	0.776	INTRON timeout
2R	15444057	2R_15444057_SNP [dm3] 2R_19556552_SNP [dm6]	G	T	3.099e^-4	0.776	INTRON sm
2R	15444068	2R_15444068_SNP [dm3] 2R_19556563_SNP [dm6]	A	G	3.099e^-4	0.776	INTRON sm
2L	19385513	2L_19385513_SNP [dm3] 2L_19385513_SNP [dm6]	A	T	3.109e^-4	0.776	INTRON fon
2L	19385515	2L_19385515_SNP [dm3] 2L_19385515_SNP [dm6]	C	T	3.109e^-4	0.776	INTRON fon
2R	5051827	2R_5051827_SNP [dm3] 2R_9164322_SNP [dm6]	C	T	3.112e^-4	0.776	SPLICE_SITE_REGION CG8046 INTRON CG8046	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4097672	2L_4097672_SNP [dm3] 2L_4097672_SNP [dm6]	G	A	3.116e^-4	0.776	INTRON ed	TF binding site mE1_TFBS_cad
2L	3766078	2L_3766078_SNP [dm3] 2L_3766078_SNP [dm6]	T	A	3.123e^-4	0.776	UPSTREAM CG43707 DOWNSTREAM CG43703 INTRON CG43707	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	3766163	2L_3766163_SNP [dm3] 2L_3766163_SNP [dm6]	C	T	3.123e^-4	0.776	UPSTREAM CG43707 DOWNSTREAM CG43703 INTRON CG43707	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	18589024	2R_18589024_SNP [dm3] 2R_22701519_SNP [dm6]	G	C	3.124e^-4	0.776	NON_SYNONYMOUS_CODING CG30259 UPSTREAM robo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
2R	14422001	2R_14422001_SNP [dm3] 2R_18534496_SNP [dm6]	G	C	3.126e^-4	0.776	SYNONYMOUS_CODING CG10924	TF binding site mE1_TFBS_chinmo
X	10892337	X_10892337_SNP [dm3] X_10998304_SNP [dm6]	G	A	3.137e^-4	0.776	INTRON CG42339
X	10892357	X_10892357_SNP [dm3] X_10998324_SNP [dm6]	G	A	3.137e^-4	0.776	INTRON CG42339
2R	17253364	2R_17253364_SNP [dm3] 2R_21365859_SNP [dm6]	T	G	3.138e^-4	0.776	INTRON cv-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2R	8816646	2R_8816646_SNP [dm3] 2R_12929141_SNP [dm6]	G	A	3.139e^-4	0.776	SYNONYMOUS_CODING sug	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9949672	2L_9949672_SNP [dm3] 2L_9949672_SNP [dm6]	A	C	3.139e^-4	0.776	DOWNSTREAM mir-87 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4596983	3L_4596983_INS [dm3] 3L_4596983_INS [dm6]	T	TGT	3.139e^-4	0.776	INTRON Src64B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4597003	3L_4597003_MNP [dm3] 3L_4597003_MNP [dm6]	GTT	CGC	3.139e^-4	0.776	INTRON Src64B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11967681	2L_11967681_SNP [dm3] 2L_11967681_SNP [dm6]	G	C	3.142e^-4	0.776	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd
2R	10459692	2R_10459692_SNP [dm3] 2R_14572187_SNP [dm6]	G	A	3.144e^-4	0.776	SPLICE_SITE_REGION LamC INTRON ttv & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10459694	2R_10459694_SNP [dm3] 2R_14572189_SNP [dm6]	T	C	3.144e^-4	0.776	SPLICE_SITE_REGION LamC INTRON ttv & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18061294	3L_18061294_SNP [dm3] 3L_18068194_SNP [dm6]	C	G	3.148e^-4	0.776	DOWNSTREAM CG44006 INTERGENIC
3R	12142983	3R_12142983_SNP [dm3] 3R_16317261_SNP [dm6]	C	T	3.150e^-4	0.776	INTRON Sulf1
2L	16975548	2L_16975548_SNP [dm3] 2L_16975548_SNP [dm6]	C	A	3.150e^-4	0.776	INTRON beat-IIIb
2L	16975765	2L_16975765_DEL [dm3] 2L_16975765_DEL [dm6]	TATTG	T	3.150e^-4	0.776	INTRON beat-IIIb
2L	16977111	2L_16977111_DEL [dm3] 2L_16977111_DEL [dm6]	TCATAAGC	T	3.150e^-4	0.776	INTRON beat-IIIb
2L	16977120	2L_16977120_SNP [dm3] 2L_16977120_SNP [dm6]	C	T	3.150e^-4	0.776	INTRON beat-IIIb
3L	3116973	3L_3116973_SNP [dm3] 3L_3116973_SNP [dm6]	G	T	3.152e^-4	0.776	DOWNSTREAM prominin-like INTRON prominin-like
2R	2597568	2R_2597568_SNP [dm3] 2R_6710063_SNP [dm6]	T	A	3.153e^-4	0.776	INTRON CG3409 & 1 other	TF binding site mE1_TFBS_HSA
3R	23519959	3R_23519959_SNP [dm3] 3R_27694237_SNP [dm6]	A	T	3.154e^-4	0.776	UPSTREAM CG43319 & 1 other INTERGENIC
2L	10296396	2L_10296396_SNP [dm3] 2L_10296396_SNP [dm6]	C	T	3.159e^-4	0.776	INTRON CYLD	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11722636	2R_11722636_SNP [dm3] 2R_15835131_SNP [dm6]	C	A	3.166e^-4	0.776	UPSTREAM Poxn INTRON tun	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
X	13453057	X_13453057_SNP [dm3] X_13559024_SNP [dm6]	C	A	3.173e^-4	0.776	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	22566134	3R_22566134_SNP [dm3] 3R_26740412_SNP [dm6]	A	C	3.174e^-4	0.776	INTERGENIC
3R	22566181	3R_22566181_SNP [dm3] 3R_26740459_SNP [dm6]	T	A	3.174e^-4	0.776	INTERGENIC
3R	9057851	3R_9057851_SNP [dm3] 3R_13232129_SNP [dm6]	C	T	3.176e^-4	0.776	INTRON Ace
2L	13093915	2L_13093915_SNP [dm3] 2L_13093915_SNP [dm6]	A	G	3.188e^-4	0.776	INTERGENIC
2L	11967868	2L_11967868_SNP [dm3] 2L_11967868_SNP [dm6]	T	C	3.191e^-4	0.776	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad
3R	19225579	3R_19225579_SNP [dm3] 3R_23399857_SNP [dm6]	A	T	3.195e^-4	0.776	UPSTREAM CR44323 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18032470	2R_18032470_SNP [dm3] 2R_22144965_SNP [dm6]	A	G	3.198e^-4	0.776	INTRON a
2R	11722626	2R_11722626_SNP [dm3] 2R_15835121_SNP [dm6]	A	T	3.203e^-4	0.776	UPSTREAM Poxn INTRON tun	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
X	1483506	X_1483506_SNP [dm3] X_1589473_SNP [dm6]	C	T	3.207e^-4	0.776	INTRON br & 1 other
3L	5334800	3L_5334800_SNP [dm3] 3L_5341700_SNP [dm6]	C	T	3.208e^-4	0.776	UPSTREAM tRNA:S7:64D INTERGENIC
2L	14412384	2L_14412384_SNP [dm3] 2L_14412384_SNP [dm6]	T	A	3.212e^-4	0.776	INTERGENIC
3R	22679223	3R_22679223_SNP [dm3] 3R_26853501_SNP [dm6]	C	G	3.215e^-4	0.776	INTRON Lerp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11143713	2R_11143713_DEL [dm3] 2R_15256208_DEL [dm6]	AGTGTTAAATTGTTCA...	A	3.219e^-4	0.776	INTRON scb	TF binding site mE1_TFBS_cad
3R	9828904	3R_9828904_SNP [dm3] 3R_14003182_SNP [dm6]	G	T	3.219e^-4	0.776	INTRON rdx
3R	19080706	3R_19080706_SNP [dm3] 3R_23254984_SNP [dm6]	C	T	3.220e^-4	0.776	UTR_3_PRIME EloA DOWNSTREAM wda
2R	19502711	2R_19502711_MNP [dm3] 2R_23615188_MNP [dm6]	AAA	GCT	3.224e^-4	0.776	UPSTREAM CG4019 INTRON CG17664	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run
2L	16877424	2L_16877424_SNP [dm3] 2L_16877424_SNP [dm6]	C	T	3.224e^-4	0.776	DOWNSTREAM CG32832 INTRON CR31781	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	17261510	X_17261510_SNP [dm3] X_17367477_SNP [dm6]	A	G	3.229e^-4	0.776	INTERGENIC
2L	19813951	2L_19813951_SNP [dm3] 2L_19813951_SNP [dm6]	G	A	3.231e^-4	0.776	NON_SYNONYMOUS_CODING CG13962 INTRON sick	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6294404	2R_6294404_SNP [dm3] 2R_10406899_SNP [dm6]	A	T	3.244e^-4	0.776	DOWNSTREAM CG12898 INTRON CG42732
2R	6295936	2R_6295936_SNP [dm3] 2R_10408431_SNP [dm6]	G	C	3.244e^-4	0.776	UPSTREAM CG12898 DOWNSTREAM CG43177 & 1 other INTRON CG42732
3L	16860532	3L_16860532_SNP [dm3] 3L_16867432_SNP [dm6]	G	A	3.245e^-4	0.776	INTRON Lmpt	TF binding site BDTNP1_TFBS_twi
2L	16931392	2L_16931392_INS [dm3] 2L_16931392_INS [dm6]	T	TG	3.247e^-4	0.776	INTERGENIC
3R	12724003	3R_12724003_SNP [dm3] 3R_16898281_SNP [dm6]	T	G	3.247e^-4	0.776	DOWNSTREAM CR43617 INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_Trl
3R	23199192	3R_23199192_SNP [dm3] 3R_27373470_SNP [dm6]	A	G	3.247e^-4	0.776	DOWNSTREAM CG42534 INTERGENIC
3R	26855873	3R_26855873_SNP [dm3] 3R_31030151_SNP [dm6]	A	G	3.249e^-4	0.776	INTERGENIC
2R	20318896	2R_20318896_SNP [dm3] 2R_24431373_SNP [dm6]	A	G	3.254e^-4	0.776	UTR_3_PRIME Pgam5-2 UPSTREAM CG15873	TF binding site mE1_TFBS_chinmo
2L	8661095	2L_8661095_SNP [dm3] 2L_8661095_SNP [dm6]	C	T	3.256e^-4	0.776	INTRON Sema-1a
2R	7093848	2R_7093848_INS [dm3] 2R_11206343_INS [dm6]	T	TGT	3.264e^-4	0.776	INTRON shn
2L	16095855	2L_16095855_SNP [dm3] 2L_16095855_SNP [dm6]	A	G	3.265e^-4	0.776	NON_SYNONYMOUS_CODING CG4891
3R	26054644	3R_26054644_SNP [dm3] 3R_30228922_SNP [dm6]	G	T	3.270e^-4	0.776	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3R	12142994	3R_12142994_DEL [dm3] 3R_16317272_DEL [dm6]	ACCTCAA	A	3.278e^-4	0.776	INTRON Sulf1
X	18176358	X_18176358_INS [dm3] X_18282325_INS [dm6]	A	AGAAA	3.288e^-4	0.776	INTRON upd3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	22181124	3R_22181124_SNP [dm3] 3R_26355402_SNP [dm6]	C	T	3.297e^-4	0.776	UPSTREAM CG33970 INTRON CG33970
3L	3192350	3L_3192350_SNP [dm3] 3L_3192350_SNP [dm6]	G	C	3.302e^-4	0.776	SYNONYMOUS_CODING CG14965 UPSTREAM Hsp83	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	12724283	2L_12724283_SNP [dm3] 2L_12724283_SNP [dm6]	G	A	3.302e^-4	0.776	SYNONYMOUS_CODING MRP	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20924800	X_20924800_SNP [dm3] X_21053773_SNP [dm6]	T	A	3.306e^-4	0.776	START_GAINED CG1518 UTR_5_PRIME CG1518 UPSTREAM bves	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	9176552	2L_9176552_SNP [dm3] 2L_9176552_SNP [dm6]	G	A	3.329e^-4	0.776	INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	13637950	X_13637950_SNP [dm3] X_13743917_SNP [dm6]	A	T	3.331e^-4	0.776	INTRON Grip91	TF binding site BDTNP1_TFBS_dl
3R	25625059	3R_25625059_SNP [dm3] 3R_29799337_SNP [dm6]	C	A	3.339e^-4	0.776	UTR_5_PRIME CG7837 UPSTREAM Ice	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
X	15319722	X_15319722_SNP [dm3] X_15425689_SNP [dm6]	C	A	3.354e^-4	0.776	INTRON Cngl
3R	23531402	3R_23531402_SNP [dm3] 3R_27705680_SNP [dm6]	G	A	3.363e^-4	0.776	SYNONYMOUS_CODING CG12428
3L	10478491	3L_10478491_SNP [dm3] 3L_10485391_SNP [dm6]	A	T	3.369e^-4	0.776	INTRON A2bp1
3L	3079251	3L_3079251_SNP [dm3] 3L_3079251_SNP [dm6]	C	T	3.369e^-4	0.776	INTRON CG11486
2L	8884551	2L_8884551_SNP [dm3] 2L_8884551_SNP [dm6]	A	G	3.378e^-4	0.776	INTERGENIC
2L	19272731	2L_19272731_SNP [dm3] 2L_19272731_SNP [dm6]	A	C	3.382e^-4	0.776	INTRON CR44190
2L	19272737	2L_19272737_DEL [dm3] 2L_19272737_DEL [dm6]	CGTG	C	3.382e^-4	0.776	INTRON CR44190
2L	19272743	2L_19272743_SNP [dm3] 2L_19272743_SNP [dm6]	C	G	3.382e^-4	0.776	INTRON CR44190
3L	2818479	3L_2818479_SNP [dm3] 3L_2818479_SNP [dm6]	G	A	3.383e^-4	0.776	INTRON CG43444
3L	2818489	3L_2818489_SNP [dm3] 3L_2818489_SNP [dm6]	T	A	3.383e^-4	0.776	INTRON CG43444
3L	2818495	3L_2818495_SNP [dm3] 3L_2818495_SNP [dm6]	G	A	3.383e^-4	0.776	INTRON CG43444
3L	2818499	3L_2818499_DEL [dm3] 3L_2818499_DEL [dm6]	ATGTAAT	C	3.383e^-4	0.776	INTRON CG43444
3L	2818532	3L_2818532_SNP [dm3] 3L_2818532_SNP [dm6]	G	A	3.383e^-4	0.776	INTRON CG43444
X	6107860	X_6107860_SNP [dm3] X_6213827_SNP [dm6]	G	A	3.384e^-4	0.776	INTERGENIC
2L	11616601	2L_11616601_SNP [dm3] 2L_11616601_SNP [dm6]	C	A	3.387e^-4	0.776	INTRON kek2
3L	1444563	3L_1444563_SNP [dm3] 3L_1444563_SNP [dm6]	G	C	3.389e^-4	0.776	INTRON Ptp61F
3L	1444716	3L_1444716_SNP [dm3] 3L_1444716_SNP [dm6]	G	A	3.389e^-4	0.776	INTRON Ptp61F
2R	4825528	2R_4825528_DEL [dm3] 2R_8938023_DEL [dm6]	AA	A	3.402e^-4	0.776	INTRON FANCI
3L	1438745	3L_1438745_SNP [dm3] 3L_1438745_SNP [dm6]	A	G	3.404e^-4	0.776	UPSTREAM SA-2 INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
X	17912046	X_17912046_SNP [dm3] X_18018013_SNP [dm6]	C	G	3.405e^-4	0.776	INTRON Sh
2L	1792847	2L_1792847_SNP [dm3] 2L_1792847_SNP [dm6]	T	C	3.406e^-4	0.776	NON_SYNONYMOUS_CODING Gr22b DOWNSTREAM Gr22a	regulatory region REDfly_CRMs
2L	1792901	2L_1792901_SNP [dm3] 2L_1792901_SNP [dm6]	A	G	3.406e^-4	0.776	NON_SYNONYMOUS_CODING Gr22b DOWNSTREAM Gr22a	regulatory region REDfly_CRMs
2R	8983460	2R_8983460_SNP [dm3] 2R_13095955_SNP [dm6]	T	A	3.407e^-4	0.776	INTERGENIC	TF binding site mE1_TFBS_inv
X	12834048	X_12834048_SNP [dm3] X_12940015_SNP [dm6]	C	G	3.413e^-4	0.776	INTRON fne	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
X	12834053	X_12834053_SNP [dm3] X_12940020_SNP [dm6]	C	A	3.413e^-4	0.776	INTRON fne	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3R	24796027	3R_24796027_SNP [dm3] 3R_28970305_SNP [dm6]	G	A	3.413e^-4	0.776	START_GAINED CG14521 UTR_5_PRIME CG14521 UPSTREAM CR45669	TF binding site mE1_TFBS_chinmo
3R	24796029	3R_24796029_SNP [dm3] 3R_28970307_SNP [dm6]	T	A	3.413e^-4	0.776	UTR_5_PRIME CG14521 UPSTREAM CR45669	TF binding site mE1_TFBS_chinmo
2R	4442513	2R_4442513_SNP [dm3] 2R_8555008_SNP [dm6]	T	C	3.418e^-4	0.776	INTERGENIC
3R	9058583	3R_9058583_SNP [dm3] 3R_13232861_SNP [dm6]	G	A	3.421e^-4	0.776	INTRON Ace
3L	5726080	3L_5726080_SNP [dm3] 3L_5732980_SNP [dm6]	C	G	3.424e^-4	0.776	INTRON sif
2R	5575559	2R_5575559_SNP [dm3] 2R_9688054_SNP [dm6]	A	C	3.426e^-4	0.776	DOWNSTREAM Uba1 INTERGENIC
X	20925258	X_20925258_SNP [dm3] X_21054231_SNP [dm6]	A	G	3.431e^-4	0.776	UTR_5_PRIME bves UPSTREAM bves & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
2R	12229672	2R_12229672_SNP [dm3] 2R_16342167_SNP [dm6]	A	G	3.437e^-4	0.776	SYNONYMOUS_CODING CG7997 DOWNSTREAM Hmgs	TF binding site mE1_TFBS_sens
X	20924522	X_20924522_SNP [dm3] X_21053495_SNP [dm6]	T	C	3.439e^-4	0.776	UPSTREAM bves INTRON CG1518	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	23526059	3R_23526059_DEL [dm3] 3R_27700337_DEL [dm6]	TT	T	3.440e^-4	0.776	UPSTREAM btz & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	24688016	3R_24688016_SNP [dm3] 3R_28862294_SNP [dm6]	T	A	3.456e^-4	0.776	INTRON spg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	24449463	3R_24449463_DEL [dm3] 3R_28623741_DEL [dm6]	GG	G	3.459e^-4	0.776	INTRON CG10011
2L	16802713	2L_16802713_SNP [dm3] 2L_16802713_SNP [dm6]	A	G	3.467e^-4	0.776	SYNONYMOUS_CODING CG13280
3R	22542193	3R_22542193_SNP [dm3] 3R_26716471_SNP [dm6]	A	G	3.468e^-4	0.776	SYNONYMOUS_CODING CG6425	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8967553	2R_8967553_SNP [dm3] 2R_13080048_SNP [dm6]	T	A	3.481e^-4	0.776	UPSTREAM Drl-2 INTERGENIC
2L	2059733	2L_2059733_DEL [dm3] 2L_2059733_DEL [dm6]	CC	C	3.481e^-4	0.776	UTR_3_PRIME dpr3
2L	2059765	2L_2059765_SNP [dm3] 2L_2059765_SNP [dm6]	A	G	3.481e^-4	0.776	UTR_3_PRIME dpr3
2L	2060601	2L_2060601_SNP [dm3] 2L_2060601_SNP [dm6]	G	A	3.481e^-4	0.776	INTRON dpr3
3R	22192155	3R_22192155_SNP [dm3] 3R_26366433_SNP [dm6]	T	A	3.489e^-4	0.776	INTERGENIC
3L	722301	3L_722301_SNP [dm3] 3L_722301_SNP [dm6]	T	C	3.494e^-4	0.776	INTERGENIC
2L	9877796	2L_9877796_SNP [dm3] 2L_9877796_SNP [dm6]	T	A	3.501e^-4	0.776	UTR_5_PRIME nAChRalpha6 INTRON nAChRalpha6
3R	6454963	3R_6454963_DEL [dm3] 3R_10629241_DEL [dm6]	GCAGG	G	3.502e^-4	0.776	INTRON hth	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	1792767	2L_1792767_SNP [dm3] 2L_1792767_SNP [dm6]	G	T	3.510e^-4	0.776	NON_SYNONYMOUS_CODING Gr22b UPSTREAM Gr22c DOWNSTREAM Gr22a	regulatory region REDfly_CRMs
2R	6294236	2R_6294236_SNP [dm3] 2R_10406731_SNP [dm6]	T	G	3.517e^-4	0.776	DOWNSTREAM CG12898 INTRON CG42732
3R	6972279	3R_6972279_SNP [dm3] 3R_11146557_SNP [dm6]	T	A	3.520e^-4	0.776	INTERGENIC
3L	20531527	3L_20531527_SNP [dm3] 3L_20538427_SNP [dm6]	C	T	3.522e^-4	0.776	INTRON Rcd2
3L	20534345	3L_20534345_SNP [dm3] 3L_20541245_SNP [dm6]	A	G	3.522e^-4	0.776	UPSTREAM Rcd2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6937898	X_6937898_SNP [dm3] X_7043865_SNP [dm6]	A	C	3.523e^-4	0.776	INTRON CG12541
X	1933401	X_1933401_SNP [dm3] X_2039368_SNP [dm6]	A	C	3.526e^-4	0.776	UTR_3_PRIME usp INTRON Actn	TF binding site mE1_TFBS_chinmo
X	2443401	X_2443401_DEL [dm3] X_2549368_DEL [dm6]	TCCAATTA	T	3.531e^-4	0.776	INTERGENIC
2L	16912234	2L_16912234_SNP [dm3] 2L_16912234_SNP [dm6]	C	G	3.533e^-4	0.776	SYNONYMOUS_CODING tweek	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	9058590	3R_9058590_INS [dm3] 3R_13232868_INS [dm6]	G	GC	3.538e^-4	0.776	INTRON Ace
2L	12323505	2L_12323505_SNP [dm3] 2L_12323505_SNP [dm6]	A	G	3.544e^-4	0.776	INTERGENIC
2L	12323507	2L_12323507_SNP [dm3] 2L_12323507_SNP [dm6]	G	A	3.544e^-4	0.776	INTERGENIC
2L	12323508	2L_12323508_SNP [dm3] 2L_12323508_SNP [dm6]	T	G	3.544e^-4	0.776	INTERGENIC
2L	16942175	2L_16942175_SNP [dm3] 2L_16942175_SNP [dm6]	T	A	3.546e^-4	0.776	INTERGENIC
2L	16943139	2L_16943139_SNP [dm3] 2L_16943139_SNP [dm6]	C	T	3.546e^-4	0.776	INTERGENIC
2L	19819855	2L_19819855_SNP [dm3] 2L_19819855_SNP [dm6]	G	A	3.548e^-4	0.776	INTRON sick	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2L	19851901	2L_19851901_SNP [dm3] 2L_19851901_SNP [dm6]	A	G	3.555e^-4	0.776	INTRON sick
2L	16904428	2L_16904428_SNP [dm3] 2L_16904428_SNP [dm6]	A	T	3.556e^-4	0.776	INTRON tweek
2L	16920584	2L_16920584_SNP [dm3] 2L_16920584_SNP [dm6]	G	T	3.556e^-4	0.776	INTERGENIC
2L	16920615	2L_16920615_SNP [dm3] 2L_16920615_SNP [dm6]	G	A	3.556e^-4	0.776	INTERGENIC
2L	16922031	2L_16922031_SNP [dm3] 2L_16922031_SNP [dm6]	G	T	3.556e^-4	0.776	INTERGENIC
2L	16922045	2L_16922045_SNP [dm3] 2L_16922045_SNP [dm6]	A	G	3.556e^-4	0.776	INTERGENIC
2L	16922050	2L_16922050_SNP [dm3] 2L_16922050_SNP [dm6]	C	T	3.556e^-4	0.776	INTERGENIC
3L	5090246	3L_5090246_SNP [dm3] 3L_5090246_SNP [dm6]	C	T	3.561e^-4	0.776	INTERGENIC
X	6102083	X_6102083_SNP [dm3] X_6208050_SNP [dm6]	G	A	3.564e^-4	0.776	INTERGENIC
3R	22192772	3R_22192772_SNP [dm3] 3R_26367050_SNP [dm6]	T	C	3.567e^-4	0.776	INTERGENIC
2L	13622312	2L_13622312_SNP [dm3] 2L_13622312_SNP [dm6]	A	C	3.571e^-4	0.776	INTRON kuz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	20874709	2L_20874709_SNP [dm3] 2L_20874709_SNP [dm6]	T	C	3.580e^-4	0.776	INTRON sky & 1 other EXON CR44981	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2L	2665276	2L_2665276_SNP [dm3] 2L_2665276_SNP [dm6]	G	A	3.583e^-4	0.776	NON_SYNONYMOUS_CODING CG9879
3R	23824654	3R_23824654_SNP [dm3] 3R_27998932_SNP [dm6]	A	G	3.593e^-4	0.776	INTERGENIC
2R	16949746	2R_16949746_SNP [dm3] 2R_21062241_SNP [dm6]	G	A	3.600e^-4	0.776	SYNONYMOUS_CODING Cht8 DOWNSTREAM mRpL54 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10872291	2R_10872291_DEL [dm3] 2R_14984786_DEL [dm6]	TT	T	3.614e^-4	0.776	UPSTREAM tRNA:CR30241 INTRON pcs
2R	6685913	2R_6685913_SNP [dm3] 2R_10798408_SNP [dm6]	T	A	3.615e^-4	0.776	UTR_5_PRIME CG33144	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16183509	2L_16183509_SNP [dm3] 2L_16183509_SNP [dm6]	A	G	3.618e^-4	0.776	SYNONYMOUS_CODING Ca-alpha1D
3R	18208044	3R_18208044_SNP [dm3] 3R_22382322_SNP [dm6]	T	G	3.623e^-4	0.776	SPLICE_SITE_REGION CG43343 DOWNSTREAM CG43342 INTRON CG43343
3R	18208593	3R_18208593_SNP [dm3] 3R_22382871_SNP [dm6]	G	A	3.623e^-4	0.776	SYNONYMOUS_CODING CG43343 DOWNSTREAM CG43342	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
4	618050	4_618050_INS [dm3] 4_597424_INS [dm6]	T	TT	3.625e^-4	0.776	DOWNSTREAM CR45199 INTERGENIC	transposable element FlyBase
2R	10249754	2R_10249754_SNP [dm3] 2R_14362249_SNP [dm6]	A	G	3.638e^-4	0.776	SYNONYMOUS_CODING Arc2 UPSTREAM CR10102 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	9960196	2L_9960196_SNP [dm3] 2L_9960196_SNP [dm6]	G	A	3.638e^-4	0.776	UTR_3_PRIME CG5850 UPSTREAM CR43683 DOWNSTREAM CG4658 & 1 other EXON CR44872
2R	9528321	2R_9528321_SNP [dm3] 2R_13640816_SNP [dm6]	T	C	3.648e^-4	0.776	INTRON fas
3R	19081018	3R_19081018_SNP [dm3] 3R_23255296_SNP [dm6]	A	G	3.653e^-4	0.776	UTR_3_PRIME wda DOWNSTREAM EloA
3R	19174335	3R_19174335_SNP [dm3] 3R_23348613_SNP [dm6]	A	G	3.654e^-4	0.776	SYNONYMOUS_CODING DNApol-epsilon	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
X	12206781	X_12206781_SNP [dm3] X_12312748_SNP [dm6]	T	A	3.659e^-4	0.776	INTRON Ten-a
3L	3077031	3L_3077031_SNP [dm3] 3L_3077031_SNP [dm6]	G	T	3.662e^-4	0.776	UPSTREAM CG11486 INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2R	7649538	2R_7649538_SNP [dm3] 2R_11762033_SNP [dm6]	G	A	3.662e^-4	0.776	INTRON ths
3R	11265083	3R_11265083_SNP [dm3] 3R_15439361_SNP [dm6]	A	G	3.663e^-4	0.776	UPSTREAM Act88F INTERGENIC	regulatory region REDfly_CRMs
2R	15443870	2R_15443870_SNP [dm3] 2R_19556365_SNP [dm6]	G	T	3.663e^-4	0.776	INTRON sm
2R	18512047	2R_18512047_SNP [dm3] 2R_22624542_SNP [dm6]	A	G	3.669e^-4	0.776	INTRON CG33143
2L	10217874	2L_10217874_SNP [dm3] 2L_10217874_SNP [dm6]	C	T	3.678e^-4	0.776	INTRON Npc1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20412981	2L_20412981_SNP [dm3] 2L_20412981_SNP [dm6]	C	G	3.681e^-4	0.776	INTRON CG10947
3R	20905989	3R_20905989_SNP [dm3] 3R_25080267_SNP [dm6]	C	T	3.684e^-4	0.776	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7838164	2R_7838164_SNP [dm3] 2R_11950659_SNP [dm6]	A	T	3.687e^-4	0.776	INTRON CG13188
X	5086566	X_5086566_SNP [dm3] X_5192533_SNP [dm6]	T	G	3.692e^-4	0.776	INTRON rg & 1 other	TF binding site mE1_TFBS_Trl
3L	632135	3L_632135_SNP [dm3] 3L_632135_SNP [dm6]	C	T	3.699e^-4	0.776	EXON CR43334	regulatory region REDfly_CRMs
3R	23520343	3R_23520343_SNP [dm3] 3R_27694621_SNP [dm6]	A	G	3.702e^-4	0.776	UPSTREAM Acp98AB & 1 other DOWNSTREAM CG43319 INTERGENIC
2L	8500002	2L_8500002_SNP [dm3] 2L_8500002_SNP [dm6]	C	T	3.717e^-4	0.776	INTRON Dh31
3R	24500366	3R_24500366_SNP [dm3] 3R_28674644_SNP [dm6]	A	T	3.718e^-4	0.776	UPSTREAM CG9990 INTERGENIC
2L	5920995	2L_5920995_SNP [dm3] 2L_5920995_SNP [dm6]	T	A	3.719e^-4	0.776	INTRON bchs
2R	10616658	2R_10616658_SNP [dm3] 2R_14729153_SNP [dm6]	T	C	3.728e^-4	0.776	INTERGENIC
2L	8601592	2L_8601592_SNP [dm3] 2L_8601592_SNP [dm6]	C	A	3.728e^-4	0.776	INTRON Sema-1a
2R	13131067	2R_13131067_SNP [dm3] 2R_17243562_SNP [dm6]	C	T	3.734e^-4	0.776	INTRON mbl
2L	6500726	2L_6500726_SNP [dm3] 2L_6500726_SNP [dm6]	G	C	3.736e^-4	0.776	INTRON CG31637
X	15905762	X_15905762_SNP [dm3] X_16011729_SNP [dm6]	C	A	3.741e^-4	0.776	NON_SYNONYMOUS_CODING Muc14A	TF binding site mE1_TFBS_sens
2L	2679188	2L_2679188_SNP [dm3] 2L_2679188_SNP [dm6]	T	C	3.742e^-4	0.776	INTRON CG31690
2L	12241878	2L_12241878_SNP [dm3] 2L_12241878_SNP [dm6]	A	T	3.744e^-4	0.776	INTRON aret	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3277899	3L_3277899_SNP [dm3] 3L_3277899_SNP [dm6]	A	T	3.749e^-4	0.776	INTERGENIC
X	13573188	X_13573188_SNP [dm3] X_13679155_SNP [dm6]	T	C	3.756e^-4	0.776	SYNONYMOUS_CODING CG12177	TF binding site BDTNP1_TFBS_twi
2L	10556182	2L_10556182_SNP [dm3] 2L_10556182_SNP [dm6]	C	T	3.761e^-4	0.776	INTRON Trim9	TF binding site BDTNP1_TFBS_da
X	2825192	X_2825192_SNP [dm3] X_2931159_SNP [dm6]	G	A	3.762e^-4	0.776	SYNONYMOUS_CODING CG32793 INTRON kirre	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9927735	3R_9927735_SNP [dm3] 3R_14102013_SNP [dm6]	T	A	3.778e^-4	0.776	SYNONYMOUS_CODING PK1-R	TF binding site mE1_TFBS_cad
3R	25989136	3R_25989136_SNP [dm3] 3R_30163414_SNP [dm6]	G	T	3.781e^-4	0.776	INTERGENIC
3R	25994111	3R_25994111_SNP [dm3] 3R_30168389_SNP [dm6]	G	T	3.781e^-4	0.776	INTRON CG31028
3L	12807022	3L_12807022_SNP [dm3] 3L_12813922_SNP [dm6]	T	A	3.784e^-4	0.776	UTR_5_PRIME CG10754 UPSTREAM CG42588 DOWNSTREAM Sap130	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	12807144	3L_12807144_SNP [dm3] 3L_12814044_SNP [dm6]	C	T	3.784e^-4	0.776	UPSTREAM CG42588 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12807222	3L_12807222_DEL [dm3] 3L_12814122_DEL [dm6]	ATAGT	A	3.784e^-4	0.776	UPSTREAM CG42588 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12807229	3L_12807229_SNP [dm3] 3L_12814129_SNP [dm6]	A	G	3.784e^-4	0.776	UPSTREAM CG42588 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19372568	X_19372568_SNP [dm3] X_19478535_SNP [dm6]	T	G	3.785e^-4	0.776	SYNONYMOUS_CODING CG32533 DOWNSTREAM mRpS14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	26856359	3R_26856359_SNP [dm3] 3R_31030637_SNP [dm6]	C	A	3.785e^-4	0.776	INTERGENIC
3R	18387337	3R_18387337_SNP [dm3] 3R_22561615_SNP [dm6]	G	A	3.789e^-4	0.776	INTRON CG5278
2R	16184243	2R_16184243_SNP [dm3] 2R_20296738_SNP [dm6]	G	T	3.795e^-4	0.776	INTERGENIC
3R	12521934	3R_12521934_SNP [dm3] 3R_16696212_SNP [dm6]	C	T	3.796e^-4	0.776	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	3275796	3L_3275796_SNP [dm3] 3L_3275796_SNP [dm6]	A	C	3.800e^-4	0.776	SYNONYMOUS_CODING CG14960
3L	20288466	3L_20288466_SNP [dm3] 3L_20295366_SNP [dm6]	C	G	3.804e^-4	0.776	UPSTREAM gogo DOWNSTREAM FRG1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	22063731	X_22063731_INS [dm3] X_22661895_INS [dm6]	C	CTGC	3.807e^-4	0.776	INTRON CR44997
3L	7850534	3L_7850534_SNP [dm3] 3L_7857434_SNP [dm6]	T	A	3.809e^-4	0.776	INTRON Pdp1
3L	5256453	3L_5256453_SNP [dm3] 3L_5263353_SNP [dm6]	T	A	3.840e^-4	0.776	INTRON shep
X	15549965	X_15549965_SNP [dm3] X_15655932_SNP [dm6]	A	T	3.840e^-4	0.776	INTERGENIC
2R	6295227	2R_6295227_SNP [dm3] 2R_10407722_SNP [dm6]	T	C	3.844e^-4	0.776	UPSTREAM CG12898 DOWNSTREAM CG43177 INTRON CG42732
2R	6295228	2R_6295228_SNP [dm3] 2R_10407723_SNP [dm6]	T	C	3.844e^-4	0.776	UPSTREAM CG12898 DOWNSTREAM CG43177 INTRON CG42732
2R	20499098	2R_20499098_SNP [dm3] 2R_24611575_SNP [dm6]	T	A	3.856e^-4	0.776	UTR_5_PRIME CG4741 UPSTREAM CG3608 DOWNSTREAM CG42360 INTRON CG4741	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3291390	3L_3291390_SNP [dm3] 3L_3291390_SNP [dm6]	C	G	3.866e^-4	0.776	UPSTREAM CG12009 DOWNSTREAM CG12017 INTERGENIC
2R	4216491	2R_4216491_SNP [dm3] 2R_8328986_SNP [dm6]	T	C	3.867e^-4	0.776	INTRON pdm3
3R	23055142	3R_23055142_SNP [dm3] 3R_27229420_SNP [dm6]	G	C	3.873e^-4	0.776	NON_SYNONYMOUS_CODING CG42814 UPSTREAM CG42813 DOWNSTREAM CG31064
3R	23055168	3R_23055168_SNP [dm3] 3R_27229446_SNP [dm6]	G	A	3.873e^-4	0.776	UTR_5_PRIME CG42814 UPSTREAM CG42813 DOWNSTREAM CG31064
3R	22189463	3R_22189463_SNP [dm3] 3R_26363741_SNP [dm6]	G	A	3.873e^-4	0.776	INTERGENIC
2L	18578516	2L_18578516_DEL [dm3] 2L_18578516_DEL [dm6]	TGAAAATGTGGCTGT...	T	3.873e^-4	0.776	INTRON Pde11
2L	18578532	2L_18578532_DEL [dm3] 2L_18578532_DEL [dm6]	TC	T	3.873e^-4	0.776	INTRON Pde11
3R	18387321	3R_18387321_SNP [dm3] 3R_22561599_SNP [dm6]	C	T	3.875e^-4	0.776	INTRON CG5278
2L	16901690	2L_16901690_SNP [dm3] 2L_16901690_SNP [dm6]	G	T	3.877e^-4	0.776	INTRON tweek & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	16901876	2L_16901876_SNP [dm3] 2L_16901876_SNP [dm6]	G	A	3.877e^-4	0.776	SYNONYMOUS_CODING CG12288 INTRON tweek	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16901975	2L_16901975_SNP [dm3] 2L_16901975_SNP [dm6]	T	C	3.877e^-4	0.776	SYNONYMOUS_CODING CG12288 INTRON tweek	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16902374	2L_16902374_SNP [dm3] 2L_16902374_SNP [dm6]	T	A	3.877e^-4	0.776	UPSTREAM CG12288 INTRON tweek	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5445409	X_5445409_SNP [dm3] X_5551376_SNP [dm6]	C	T	3.878e^-4	0.776	INTRON Vsx2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	5489300	2L_5489300_SNP [dm3] 2L_5489300_SNP [dm6]	G	T	3.879e^-4	0.776	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	12818489	2R_12818489_SNP [dm3] 2R_16930984_SNP [dm6]	T	A	3.883e^-4	0.776	INTRON Pkc53E
3R	12454688	3R_12454688_SNP [dm3] 3R_16628966_SNP [dm6]	C	T	3.894e^-4	0.776	INTRON Fas1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26936492	3R_26936492_SNP [dm3] 3R_31110770_SNP [dm6]	A	T	3.896e^-4	0.776	INTERGENIC
3R	23520333	3R_23520333_SNP [dm3] 3R_27694611_SNP [dm6]	A	G	3.903e^-4	0.776	UPSTREAM Acp98AB & 1 other DOWNSTREAM CG43319 INTERGENIC
2L	5550721	2L_5550721_SNP [dm3] 2L_5550721_SNP [dm6]	A	G	3.908e^-4	0.776	SYNONYMOUS_CODING CG14014	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	6729927	3R_6729927_SNP [dm3] 3R_10904205_SNP [dm6]	C	T	3.914e^-4	0.776	INTERGENIC
2R	18710122	2R_18710122_SNP [dm3] 2R_22822599_SNP [dm6]	G	A	3.919e^-4	0.776	DOWNSTREAM CG30271 INTRON CG42284
2R	13922574	2R_13922574_SNP [dm3] 2R_18035069_SNP [dm6]	T	C	3.919e^-4	0.776	INTERGENIC
X	13063838	X_13063838_SNP [dm3] X_13169805_SNP [dm6]	G	A	3.923e^-4	0.776	INTRON CG34411
3L	8727682	3L_8727682_SNP [dm3] 3L_8734582_SNP [dm6]	A	G	3.934e^-4	0.776	SYNONYMOUS_CODING Prm	TF binding site mE1_TFBS_cad
2L	12669310	2L_12669310_SNP [dm3] 2L_12669310_SNP [dm6]	T	A	3.947e^-4	0.776	UTR_5_PRIME CG15485 INTRON pdm2
2L	19816594	2L_19816594_INS [dm3] 2L_19816594_INS [dm6]	T	TC	3.953e^-4	0.776	UPSTREAM snRNA:U2:38ABa DOWNSTREAM snRNA:U5:38ABb INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	20922246	X_20922246_SNP [dm3] X_21051219_SNP [dm6]	A	G	3.958e^-4	0.776	SYNONYMOUS_CODING CG1518 UPSTREAM snoRNA:Me28S-U3344b DOWNSTREAM scaRNA:MeU2-C28	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14556460	3L_14556460_SNP [dm3] 3L_14563360_SNP [dm6]	T	A	3.959e^-4	0.776	DOWNSTREAM CG34039 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_Kr
2R	12059568	2R_12059568_SNP [dm3] 2R_16172063_SNP [dm6]	G	A	3.960e^-4	0.776	SYNONYMOUS_CODING Ptp52F	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	12059610	2R_12059610_SNP [dm3] 2R_16172105_SNP [dm6]	C	G	3.960e^-4	0.776	SYNONYMOUS_CODING Ptp52F	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	12059625	2R_12059625_SNP [dm3] 2R_16172120_SNP [dm6]	A	G	3.960e^-4	0.776	SYNONYMOUS_CODING Ptp52F	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	12059661	2R_12059661_SNP [dm3] 2R_16172156_SNP [dm6]	G	A	3.960e^-4	0.776	SYNONYMOUS_CODING Ptp52F	TF binding site mE1_TFBS_cad
2L	12724402	2L_12724402_SNP [dm3] 2L_12724402_SNP [dm6]	G	T	3.960e^-4	0.776	INTRON MRP	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4831458	2R_4831458_SNP [dm3] 2R_8943953_SNP [dm6]	G	C	3.968e^-4	0.776	DOWNSTREAM CG8230 EXON CR44274
2R	20949940	2R_20949940_INS [dm3] 2R_25062417_INS [dm6]	C	CCAGTCGC	3.970e^-4	0.776	INTRON gsb	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14109728	2L_14109728_SNP [dm3] 2L_14109728_SNP [dm6]	C	T	4.001e^-4	0.776	NON_SYNONYMOUS_CODING CG31769 UPSTREAM CG15293
3L	21251240	3L_21251240_SNP [dm3] 3L_21258140_SNP [dm6]	A	G	4.003e^-4	0.776	NON_SYNONYMOUS_CODING CG43218 INTRON Eip78C
2L	16817652	2L_16817652_SNP [dm3] 2L_16817652_SNP [dm6]	T	C	4.004e^-4	0.776	INTRON CG13280 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	19818128	2L_19818128_SNP [dm3] 2L_19818128_SNP [dm6]	G	C	4.016e^-4	0.776	INTRON sick	transposable element FlyBase
2L	16876140	2L_16876140_SNP [dm3] 2L_16876140_SNP [dm6]	G	T	4.017e^-4	0.776	INTRON CR31781
3R	2746183	3R_2746183_SNP [dm3] 3R_6920461_SNP [dm6]	T	C	4.029e^-4	0.776	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	3766552	3L_3766552_SNP [dm3] 3L_3766552_SNP [dm6]	T	C	4.032e^-4	0.776	UPSTREAM CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	5256476	3L_5256476_SNP [dm3] 3L_5263376_SNP [dm6]	T	G	4.039e^-4	0.776	INTRON shep
2R	14004703	2R_14004703_SNP [dm3] 2R_18117198_SNP [dm6]	T	C	4.043e^-4	0.776	DOWNSTREAM stau INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	13065486	3L_13065486_SNP [dm3] 3L_13072386_SNP [dm6]	A	G	4.045e^-4	0.776	INTERGENIC
3L	13065568	3L_13065568_SNP [dm3] 3L_13072468_SNP [dm6]	G	T	4.045e^-4	0.776	INTERGENIC
2L	20906431	2L_20906431_SNP [dm3] 2L_20906431_SNP [dm6]	A	T	4.046e^-4	0.776	INTRON sky & 1 other
2L	20906433	2L_20906433_DEL [dm3] 2L_20906433_DEL [dm6]	CTTCT	A	4.046e^-4	0.776	INTRON sky & 1 other
3L	5256441	3L_5256441_SNP [dm3] 3L_5263341_SNP [dm6]	G	T	4.050e^-4	0.776	INTRON shep
2R	5606803	2R_5606803_SNP [dm3] 2R_9719298_SNP [dm6]	C	A	4.053e^-4	0.776	INTRON sqa	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8971403	3L_8971403_SNP [dm3] 3L_8978303_SNP [dm6]	A	G	4.054e^-4	0.776	DOWNSTREAM Srp68 INTRON CG5644	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	7586860	2L_7586860_SNP [dm3] 2L_7586860_SNP [dm6]	A	C	4.057e^-4	0.776	INTERGENIC
3L	2993130	3L_2993130_SNP [dm3] 3L_2993130_SNP [dm6]	G	C	4.059e^-4	0.776	INTERGENIC
2L	16902164	2L_16902164_SNP [dm3] 2L_16902164_SNP [dm6]	T	A	4.059e^-4	0.776	UTR_5_PRIME CG12288 INTRON tweek	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23057934	3R_23057934_SNP [dm3] 3R_27232212_SNP [dm6]	T	C	4.061e^-4	0.776	INTRON CG31064	TF binding site mE1_TFBS_HSA
2L	6103903	2L_6103903_SNP [dm3] 2L_6103903_SNP [dm6]	G	A	4.061e^-4	0.776	INTRON stai
2R	10378828	2R_10378828_SNP [dm3] 2R_14491323_SNP [dm6]	G	C	4.064e^-4	0.776	INTRON L
2L	16873454	2L_16873454_SNP [dm3] 2L_16873454_SNP [dm6]	A	G	4.064e^-4	0.776	INTRON CR31781
3L	17152884	3L_17152884_SNP [dm3] 3L_17159784_SNP [dm6]	A	T	4.066e^-4	0.776	INTRON Rbp6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15388375	2R_15388375_SNP [dm3] 2R_19500870_SNP [dm6]	A	G	4.074e^-4	0.776	DOWNSTREAM CG15120 INTRON CG16926
2L	16940188	2L_16940188_SNP [dm3] 2L_16940188_SNP [dm6]	C	G	4.081e^-4	0.776	INTERGENIC
3R	22541875	3R_22541875_SNP [dm3] 3R_26716153_SNP [dm6]	G	A	4.085e^-4	0.776	SYNONYMOUS_CODING CG6425	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5256095	2L_5256095_SNP [dm3] 2L_5256095_SNP [dm6]	C	A	4.087e^-4	0.776	INTRON tkv	TF binding site mE1_TFBS_cad
2L	9861449	2L_9861449_SNP [dm3] 2L_9861449_SNP [dm6]	A	G	4.098e^-4	0.776	INTRON nAChRalpha6	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	12961015	3R_12961015_SNP [dm3] 3R_17135293_SNP [dm6]	A	C	4.110e^-4	0.776	UPSTREAM CG5246 DOWNSTREAM CG31267 INTERGENIC
2R	10032817	2R_10032817_SNP [dm3] 2R_14145312_SNP [dm6]	T	C	4.112e^-4	0.776	DOWNSTREAM mir-989 INTERGENIC
3R	18635630	3R_18635630_SNP [dm3] 3R_22809908_SNP [dm6]	G	A	4.115e^-4	0.776	INTERGENIC
2L	17174084	2L_17174084_SNP [dm3] 2L_17174084_SNP [dm6]	A	G	4.118e^-4	0.776	UTR_3_PRIME CG34169 DOWNSTREAM beat-IIIa & 1 other
2L	17174101	2L_17174101_SNP [dm3] 2L_17174101_SNP [dm6]	G	A	4.118e^-4	0.776	UTR_3_PRIME CG34169 DOWNSTREAM beat-IIIa & 1 other
3R	25913742	3R_25913742_SNP [dm3] 3R_30088020_SNP [dm6]	C	A	4.129e^-4	0.776	INTRON sima
2R	19481394	2R_19481394_SNP [dm3] 2R_23593871_SNP [dm6]	G	A	4.146e^-4	0.776	INTRON apt	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
X	22063758	X_22063758_SNP [dm3] X_22661922_SNP [dm6]	C	G	4.151e^-4	0.776	INTRON CR44997
X	22157764	X_22157764_SNP [dm3] X_22755928_SNP [dm6]	T	C	4.157e^-4	0.776	INTRON CR44997	transposable element FlyBase
3L	3282241	3L_3282241_SNP [dm3] 3L_3282241_SNP [dm6]	G	A	4.160e^-4	0.776	INTRON CG12017
2L	5303987	2L_5303987_SNP [dm3] 2L_5303987_SNP [dm6]	A	G	4.176e^-4	0.776	INTRON vri
2R	13922623	2R_13922623_SNP [dm3] 2R_18035118_SNP [dm6]	A	G	4.178e^-4	0.776	INTERGENIC
X	16777453	X_16777453_DEL [dm3] X_16883420_DEL [dm6]	TAACAGTCCAA...	T	4.184e^-4	0.776	DOWNSTREAM CG4872 INTRON CG9104	TF binding site mE1_TFBS_chinmo
3R	18457269	3R_18457269_SNP [dm3] 3R_22631547_SNP [dm6]	T	A	4.189e^-4	0.776	DOWNSTREAM CR43474 INTRON loco	regulatory region REDfly_CRMs
2L	16945663	2L_16945663_SNP [dm3] 2L_16945663_SNP [dm6]	G	A	4.192e^-4	0.776	UPSTREAM CR43053 INTERGENIC
3R	23198615	3R_23198615_SNP [dm3] 3R_27372893_SNP [dm6]	C	T	4.214e^-4	0.776	DOWNSTREAM CG42534 INTERGENIC
2L	14377158	2L_14377158_SNP [dm3] 2L_14377158_SNP [dm6]	C	A	4.220e^-4	0.776	INTERGENIC	transposable element FlyBase
X	12177529	X_12177529_SNP [dm3] X_12283496_SNP [dm6]	C	A	4.236e^-4	0.776	INTRON Ten-a
2L	19824491	2L_19824491_SNP [dm3] 2L_19824491_SNP [dm6]	C	T	4.236e^-4	0.776	INTRON sick
2L	19824511	2L_19824511_SNP [dm3] 2L_19824511_SNP [dm6]	C	T	4.236e^-4	0.776	INTRON sick
2R	19459743	2R_19459743_SNP [dm3] 2R_23572220_SNP [dm6]	G	C	4.238e^-4	0.776	INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	25437835	3R_25437835_SNP [dm3] 3R_29612113_SNP [dm6]	C	T	4.240e^-4	0.776	INTRON alph
3L	16052227	3L_16052227_SNP [dm3] 3L_16059127_SNP [dm6]	C	G	4.258e^-4	0.776	INTRON Mbs
2L	20952261	2L_20952261_SNP [dm3] 2L_20952261_SNP [dm6]	G	A	4.258e^-4	0.776	INTERGENIC
2L	13070720	2L_13070720_SNP [dm3] 2L_13070720_SNP [dm6]	T	C	4.274e^-4	0.776	INTERGENIC
2R	14806863	2R_14806863_SNP [dm3] 2R_18919358_SNP [dm6]	G	T	4.279e^-4	0.776	INTRON sano
3L	10002685	3L_10002685_SNP [dm3] 3L_10009585_SNP [dm6]	C	G	4.283e^-4	0.776	INTRON dpr6	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22189703	3R_22189703_SNP [dm3] 3R_26363981_SNP [dm6]	G	C	4.285e^-4	0.776	INTERGENIC
3R	16156318	3R_16156318_SNP [dm3] 3R_20330596_SNP [dm6]	G	A	4.288e^-4	0.776	UTR_3_PRIME Sirt2 DOWNSTREAM Sirt2	TF binding site mE1_TFBS_cad
2L	3527519	2L_3527519_INS [dm3] 2L_3527519_INS [dm6]	A	AA	4.288e^-4	0.776	UTR_3_PRIME CG8852 & 1 other
2L	13049222	2L_13049222_SNP [dm3] 2L_13049222_SNP [dm6]	G	A	4.298e^-4	0.776	INTRON CG9932
3R	19174218	3R_19174218_SNP [dm3] 3R_23348496_SNP [dm6]	G	A	4.304e^-4	0.776	INTRON DNApol-epsilon	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_sens
2R	20498867	2R_20498867_SNP [dm3] 2R_24611344_SNP [dm6]	C	A	4.308e^-4	0.776	UPSTREAM CG3608 DOWNSTREAM CG42360 INTRON CG4741	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
2L	16975770	2L_16975770_INS [dm3] 2L_16975770_INS [dm6]	T	TAATATATGCCTT...	4.313e^-4	0.776	INTRON beat-IIIb
2R	5606939	2R_5606939_SNP [dm3] 2R_9719434_SNP [dm6]	A	G	4.314e^-4	0.776	INTRON sqa
3R	26038971	3R_26038971_SNP [dm3] 3R_30213249_SNP [dm6]	G	C	4.314e^-4	0.776	DOWNSTREAM CecB & 2 others INTERGENIC
2L	12668135	2L_12668135_SNP [dm3] 2L_12668135_SNP [dm6]	C	A	4.315e^-4	0.776	SYNONYMOUS_CODING CG15485 INTRON pdm2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	750765	3L_750765_SNP [dm3] 3L_750765_SNP [dm6]	T	C	4.325e^-4	0.776	INTRON hng3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	2678232	3R_2678232_SNP [dm3] 3R_6852510_SNP [dm6]	C	G	4.325e^-4	0.776	INTERGENIC	regulatory region REDfly_CRMs
3L	1453413	3L_1453413_SNP [dm3] 3L_1453413_SNP [dm6]	T	A	4.337e^-4	0.776	INTRON Ptp61F
3L	1453415	3L_1453415_DEL [dm3] 3L_1453415_DEL [dm6]	GAG	A	4.337e^-4	0.776	INTRON Ptp61F
3L	1453423	3L_1453423_SNP [dm3] 3L_1453423_SNP [dm6]	T	C	4.337e^-4	0.776	INTRON Ptp61F
2L	19817064	2L_19817064_SNP [dm3] 2L_19817064_SNP [dm6]	A	T	4.340e^-4	0.776	DOWNSTREAM snRNA:U5:38ABb INTRON sick	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3R	23825186	3R_23825186_SNP [dm3] 3R_27999464_SNP [dm6]	A	T	4.340e^-4	0.776	INTERGENIC
2R	15061158	2R_15061158_SNP [dm3] 2R_19173653_SNP [dm6]	C	A	4.346e^-4	0.776	INTRON CG10737
2L	15302628	2L_15302628_SNP [dm3] 2L_15302628_SNP [dm6]	G	T	4.358e^-4	0.776	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20824286	X_20824286_SNP [dm3] X_20953259_SNP [dm6]	C	A	4.364e^-4	0.776	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	7324542	3L_7324542_SNP [dm3] 3L_7331442_SNP [dm6]	A	G	4.365e^-4	0.776	SYNONYMOUS_CODING mus312 UTR_3_PRIME mus312 & 1 other
X	19371743	X_19371743_SNP [dm3] X_19477710_SNP [dm6]	A	T	4.366e^-4	0.776	SYNONYMOUS_CODING CG32533	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2818514	3L_2818514_SNP [dm3] 3L_2818514_SNP [dm6]	G	A	4.372e^-4	0.776	INTRON CG43444
2R	7734325	2R_7734325_SNP [dm3] 2R_11846820_SNP [dm6]	G	A	4.373e^-4	0.776	INTRON Sln
2R	10032687	2R_10032687_SNP [dm3] 2R_14145182_SNP [dm6]	A	T	4.374e^-4	0.776	DOWNSTREAM mir-989 INTERGENIC
3L	4143236	3L_4143236_SNP [dm3] 3L_4143236_SNP [dm6]	T	G	4.379e^-4	0.776	SYNONYMOUS_CODING CG32260 INTRON CG32260
3R	26039323	3R_26039323_SNP [dm3] 3R_30213601_SNP [dm6]	T	C	4.390e^-4	0.776	DOWNSTREAM Cec2 INTRON CecB
2R	11960443	2R_11960443_SNP [dm3] 2R_16072938_SNP [dm6]	T	C	4.396e^-4	0.776	INTERGENIC
X	20927060	X_20927060_SNP [dm3] X_21056033_SNP [dm6]	T	A	4.399e^-4	0.776	INTRON bves	TF binding site BDTNP1_TFBS_dl
2R	16185337	2R_16185337_SNP [dm3] 2R_20297832_SNP [dm6]	C	G	4.417e^-4	0.776	INTERGENIC
2R	18966350	2R_18966350_SNP [dm3] 2R_23078827_SNP [dm6]	G	A	4.428e^-4	0.776	SYNONYMOUS_CODING Art7 DOWNSTREAM CG43659	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6967704	3R_6967704_SNP [dm3] 3R_11141982_SNP [dm6]	G	C	4.430e^-4	0.776	INTERGENIC
X	5351083	X_5351083_SNP [dm3] X_5457050_SNP [dm6]	C	T	4.432e^-4	0.776	INTRON SPR
3L	20521078	3L_20521078_SNP [dm3] 3L_20527978_SNP [dm6]	T	C	4.434e^-4	0.776	UTR_3_PRIME Rcd2 DOWNSTREAM CG4858
3R	19845351	3R_19845351_SNP [dm3] 3R_24019629_SNP [dm6]	A	G	4.442e^-4	0.776	INTRON KrT95D
3R	22541817	3R_22541817_DEL [dm3] 3R_26716095_DEL [dm6]	TGAC	T	4.464e^-4	0.776	INTRON CG6425	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19813153	2L_19813153_SNP [dm3] 2L_19813153_SNP [dm6]	C	T	4.473e^-4	0.776	DOWNSTREAM CG13962 & 1 other INTRON sick
X	2586584	X_2586584_SNP [dm3] X_2692551_SNP [dm6]	G	A	4.479e^-4	0.776	UTR_3_PRIME per DOWNSTREAM CG2650
X	13063747	X_13063747_SNP [dm3] X_13169714_SNP [dm6]	G	A	4.484e^-4	0.776	INTRON CG34411
2L	8260317	2L_8260317_SNP [dm3] 2L_8260317_SNP [dm6]	A	G	4.490e^-4	0.776	UTR_3_PRIME Btk29A
2L	5490456	2L_5490456_INS [dm3] 2L_5490456_INS [dm6]	G	GGCTG	4.497e^-4	0.776	INTERGENIC
2R	6996128	2R_6996128_SNP [dm3] 2R_11108623_SNP [dm6]	T	C	4.511e^-4	0.776	INTRON luna
3R	23199056	3R_23199056_SNP [dm3] 3R_27373334_SNP [dm6]	C	T	4.520e^-4	0.776	DOWNSTREAM CG42534 INTERGENIC
3R	23199062	3R_23199062_SNP [dm3] 3R_27373340_SNP [dm6]	A	T	4.520e^-4	0.776	DOWNSTREAM CG42534 INTERGENIC
2L	13739590	2L_13739590_SNP [dm3] 2L_13739590_SNP [dm6]	A	G	4.521e^-4	0.776	INTERGENIC
2L	13252683	2L_13252683_SNP [dm3] 2L_13252683_SNP [dm6]	A	C	4.533e^-4	0.776	INTRON CG31728
3L	5528948	3L_5528948_SNP [dm3] 3L_5535848_SNP [dm6]	T	C	4.538e^-4	0.776	UPSTREAM CG13285 INTERGENIC
2R	4807317	2R_4807317_SNP [dm3] 2R_8919812_SNP [dm6]	G	T	4.539e^-4	0.776	SYNONYMOUS_CODING CG8248 UPSTREAM CG34219 DOWNSTREAM Spt
2L	17516202	2L_17516202_SNP [dm3] 2L_17516202_SNP [dm6]	T	C	4.539e^-4	0.776	INTRON Dhc36C	TF binding site BDTNP1_TFBS_twi
2L	7159087	2L_7159087_SNP [dm3] 2L_7159087_SNP [dm6]	A	G	4.541e^-4	0.776	INTERGENIC
2R	5976316	2R_5976316_SNP [dm3] 2R_10088811_SNP [dm6]	C	A	4.541e^-4	0.776	INTRON CG2269
2R	18512490	2R_18512490_SNP [dm3] 2R_22624985_SNP [dm6]	T	A	4.544e^-4	0.776	INTRON CG33143
2L	16901832	2L_16901832_SNP [dm3] 2L_16901832_SNP [dm6]	G	A	4.546e^-4	0.776	NON_SYNONYMOUS_CODING CG12288 INTRON tweek	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA

Missing results

By genomic position
Variant impact
Gene name

pc_FL_Hobo_HC phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results