DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.337e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	3.2303	0.0723

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1971 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	6960692	3L_6960692_SNP [dm3] 3L_6967592_SNP [dm6]	A	G	1.871e^-6	0.897	SYNONYMOUS_CODING CG10064 DOWNSTREAM Mis12	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	18025266	X_18025266_SNP [dm3] X_18131233_SNP [dm6]	T	A	3.053e^-6	0.897	UTR_3_PRIME ari-1 DOWNSTREAM ari-1
2R	17976167	2R_17976167_SNP [dm3] 2R_22088662_SNP [dm6]	C	T	4.117e^-6	0.897	UTR_5_PRIME CG13502 DOWNSTREAM CG43393
2R	17976170	2R_17976170_SNP [dm3] 2R_22088665_SNP [dm6]	G	C	4.117e^-6	0.897	UTR_5_PRIME CG13502 DOWNSTREAM CG43393
3R	13976534	3R_13976534_SNP [dm3] 3R_18150812_SNP [dm6]	C	A	4.243e^-6	0.897	INTERGENIC
3R	5312697	3R_5312697_SNP [dm3] 3R_9486975_SNP [dm6]	T	G	6.218e^-6	0.897	UTR_5_PRIME CG16779
2L	4335627	2L_4335627_SNP [dm3] 2L_4335627_SNP [dm6]	C	G	8.042e^-6	0.897	INTRON Atet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	13198339	2L_13198339_SNP [dm3] 2L_13198339_SNP [dm6]	C	T	8.265e^-6	0.897	SPLICE_SITE_REGION CG16972 INTRON CG16972	TF binding site mE1_TFBS_cad
3L	1531315	3L_1531315_SNP [dm3] 3L_1531315_SNP [dm6]	C	G	9.786e^-6	0.897	UPSTREAM Ir62a INTRON CG12090	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	1822115	X_1822115_SNP [dm3] X_1928082_SNP [dm6]	G	A	1.041e^-5	0.897	UPSTREAM CG11596 DOWNSTREAM Ocrl INTRON CG11596	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3R	9550253	3R_9550253_INS [dm3] 3R_13724531_INS [dm6]	C	CGAACC	1.245e^-5	0.897	INTRON CG34383	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
X	15818480	X_15818480_SNP [dm3] X_15924447_SNP [dm6]	T	C	1.258e^-5	0.897	SYNONYMOUS_CODING CG8916 UPSTREAM Lcch3
3L	1107836	3L_1107836_SNP [dm3] 3L_1107836_SNP [dm6]	G	A	1.293e^-5	0.897	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	12615993	2R_12615993_SNP [dm3] 2R_16728488_SNP [dm6]	T	C	1.368e^-5	0.897	INTRON CG30463
X	16565339	X_16565339_SNP [dm3] X_16671306_SNP [dm6]	T	C	1.454e^-5	0.897	INTRON CG13012	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4859287	3R_4859287_SNP [dm3] 3R_9033565_SNP [dm6]	A	T	1.457e^-5	0.897	UTR_5_PRIME neur INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_Dll mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
X	18843974	X_18843974_SNP [dm3] X_18949941_SNP [dm6]	T	C	1.484e^-5	0.897	INTRON CG43759
3R	23986624	3R_23986624_SNP [dm3] 3R_28160902_SNP [dm6]	G	C	1.518e^-5	0.897	INTRON CG34354
2L	5064447	2L_5064447_SNP [dm3] 2L_5064447_SNP [dm6]	C	T	1.858e^-5	0.897	UTR_5_PRIME qtc INTRON qtc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	3773851	3R_3773851_SNP [dm3] 3R_7948129_SNP [dm6]	C	T	1.863e^-5	0.897	INTRON dsx	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	6189489	2L_6189489_SNP [dm3] 2L_6189489_SNP [dm6]	A	G	1.897e^-5	0.897	INTRON CG34380	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4333473	2L_4333473_SNP [dm3] 2L_4333473_SNP [dm6]	G	T	1.930e^-5	0.897	UPSTREAM Atet INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	4792282	3L_4792282_SNP [dm3] 3L_4792282_SNP [dm6]	C	G	1.957e^-5	0.897	SYNONYMOUS_CODING RhoGEF64C	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20503929	2R_20503929_SNP [dm3] 2R_24616406_SNP [dm6]	T	C	2.012e^-5	0.897	INTRON CG13594
2R	8444367	2R_8444367_SNP [dm3] 2R_12556862_SNP [dm6]	C	T	2.041e^-5	0.897	SYNONYMOUS_CODING fra	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	4858555	3R_4858555_SNP [dm3] 3R_9032833_SNP [dm6]	A	T	2.260e^-5	0.897	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	4858813	3R_4858813_SNP [dm3] 3R_9033091_SNP [dm6]	G	C	2.260e^-5	0.897	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23983828	3R_23983828_INS [dm3] 3R_28158106_INS [dm6]	A	AATCAAGCTAG...	2.404e^-5	0.897	INTRON CG34354	TF binding site mE1_TFBS_inv
3L	14900108	3L_14900108_SNP [dm3] 3L_14907008_SNP [dm6]	C	A	2.427e^-5	0.897	INTRON DCX-EMAP
2L	7510288	2L_7510288_SNP [dm3] 2L_7510288_SNP [dm6]	C	T	2.570e^-5	0.897	INTRON RapGAP1
X	1819533	X_1819533_SNP [dm3] X_1925500_SNP [dm6]	T	C	2.622e^-5	0.897	SPLICE_SITE_REGION Ocrl INTRON Ocrl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	17575922	X_17575922_SNP [dm3] X_17681889_SNP [dm6]	T	A	2.693e^-5	0.897	INTRON chas	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6617870	3L_6617870_SNP [dm3] 3L_6624770_SNP [dm6]	G	A	2.908e^-5	0.897	INTRON GluRIA
3R	15444024	3R_15444024_SNP [dm3] 3R_19618302_SNP [dm6]	T	A	3.224e^-5	0.897	INTRON CG6231
3R	23965546	3R_23965546_SNP [dm3] 3R_28139824_SNP [dm6]	C	G	3.290e^-5	0.897	INTERGENIC
3L	12854288	3L_12854288_SNP [dm3] 3L_12861188_SNP [dm6]	C	A	3.290e^-5	0.897	NON_SYNONYMOUS_CODING CG32107 DOWNSTREAM CG10943	TF binding site mE1_TFBS_bab1
3R	22888958	3R_22888958_SNP [dm3] 3R_27063236_SNP [dm6]	C	T	3.525e^-5	0.897	DOWNSTREAM CG34292 INTRON Nep5
3R	23984245	3R_23984245_SNP [dm3] 3R_28158523_SNP [dm6]	T	A	3.532e^-5	0.897	INTRON CG34354
3R	26441982	3R_26441982_SNP [dm3] 3R_30616260_SNP [dm6]	G	A	3.532e^-5	0.897	DOWNSTREAM CR45571 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14454533	X_14454533_SNP [dm3] X_14560500_SNP [dm6]	C	G	3.745e^-5	0.897	INTERGENIC
2L	11950629	2L_11950629_SNP [dm3] 2L_11950629_SNP [dm6]	T	C	3.768e^-5	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11950690	2L_11950690_SNP [dm3] 2L_11950690_SNP [dm6]	A	T	3.768e^-5	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6129525	2R_6129525_SNP [dm3] 2R_10242020_SNP [dm6]	C	T	3.782e^-5	0.897	SYNONYMOUS_CODING Hdc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13305859	3L_13305859_SNP [dm3] 3L_13312759_SNP [dm6]	T	G	3.797e^-5	0.897	INTERGENIC
3R	14979690	3R_14979690_SNP [dm3] 3R_19153968_SNP [dm6]	T	C	3.987e^-5	0.897	UPSTREAM CG5835 DOWNSTREAM CG11779 INTERGENIC
3L	13305965	3L_13305965_SNP [dm3] 3L_13312865_SNP [dm6]	T	A	3.992e^-5	0.897	INTERGENIC
2L	7175809	2L_7175809_SNP [dm3] 2L_7175809_SNP [dm6]	T	A	4.015e^-5	0.897	INTERGENIC
3L	11327849	3L_11327849_SNP [dm3] 3L_11334749_SNP [dm6]	G	A	4.026e^-5	0.897	INTERGENIC
2R	17154760	2R_17154760_SNP [dm3] 2R_21267255_SNP [dm6]	C	T	4.090e^-5	0.897	SYNONYMOUS_CODING CG30393 UPSTREAM CG30391 INTRON Rgk3	TF binding site mE1_TFBS_chinmo
3L	17816161	3L_17816161_SNP [dm3] 3L_17823061_SNP [dm6]	A	G	4.122e^-5	0.897	UPSTREAM Grd & 1 other INTERGENIC
2L	2466176	2L_2466176_SNP [dm3] 2L_2466176_SNP [dm6]	G	C	4.269e^-5	0.897	INTERGENIC	enhancer FlyBase
2R	18758054	2R_18758054_SNP [dm3] 2R_22870531_SNP [dm6]	T	C	4.321e^-5	0.897	UTR_3_PRIME fd59A UPSTREAM CG13532	TF binding site mE1_TFBS_cad
3R	26845665	3R_26845665_SNP [dm3] 3R_31019943_SNP [dm6]	T	C	4.380e^-5	0.897	INTERGENIC	TF binding site mE1_TFBS_inv
3L	21728117	3L_21728117_SNP [dm3] 3L_21735017_SNP [dm6]	C	T	4.462e^-5	0.897	UPSTREAM CR43888 DOWNSTREAM CG14573 INTERGENIC
2L	10412180	2L_10412180_SNP [dm3] 2L_10412180_SNP [dm6]	T	C	4.494e^-5	0.897	INTRON CG5355
2L	4335778	2L_4335778_SNP [dm3] 2L_4335778_SNP [dm6]	T	A	4.524e^-5	0.897	INTRON Atet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14979055	3R_14979055_SNP [dm3] 3R_19153333_SNP [dm6]	C	A	4.685e^-5	0.897	DOWNSTREAM CG11779 INTRON CG5835
2R	18746028	2R_18746028_SNP [dm3] 2R_22858505_SNP [dm6]	G	A	4.736e^-5	0.897	INTRON inaD
2R	18746029	2R_18746029_SNP [dm3] 2R_22858506_SNP [dm6]	G	A	4.736e^-5	0.897	INTRON inaD
3R	21044138	3R_21044138_SNP [dm3] 3R_25218416_SNP [dm6]	A	G	4.888e^-5	0.897	SYNONYMOUS_CODING CG31106 UPSTREAM CG31103
3L	14185603	3L_14185603_SNP [dm3] 3L_14192503_SNP [dm6]	C	T	4.892e^-5	0.897	INTRON nuf	TF binding site BDTNP1_TFBS_dl
3L	4416330	3L_4416330_SNP [dm3] 3L_4416330_SNP [dm6]	C	T	5.118e^-5	0.897	INTRON DOR
3L	2018577	3L_2018577_SNP [dm3] 3L_2018577_SNP [dm6]	C	T	5.169e^-5	0.897	INTERGENIC
2L	11376614	2L_11376614_INS [dm3] 2L_11376614_INS [dm6]	A	GC	5.182e^-5	0.897	INTERGENIC	regulatory region REDfly_CRMs
3R	23984456	3R_23984456_SNP [dm3] 3R_28158734_SNP [dm6]	G	C	5.216e^-5	0.897	INTRON CG34354
2L	15739547	2L_15739547_SNP [dm3] 2L_15739547_SNP [dm6]	G	A	5.223e^-5	0.897	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13305938	3L_13305938_SNP [dm3] 3L_13312838_SNP [dm6]	A	T	5.305e^-5	0.897	INTERGENIC
3L	13305953	3L_13305953_SNP [dm3] 3L_13312853_SNP [dm6]	C	T	5.305e^-5	0.897	INTERGENIC
3L	13305958	3L_13305958_SNP [dm3] 3L_13312858_SNP [dm6]	C	T	5.305e^-5	0.897	INTERGENIC
3L	13305967	3L_13305967_SNP [dm3] 3L_13312867_SNP [dm6]	A	T	5.305e^-5	0.897	INTERGENIC
3L	13305978	3L_13305978_SNP [dm3] 3L_13312878_SNP [dm6]	T	A	5.305e^-5	0.897	INTERGENIC
3L	13306014	3L_13306014_SNP [dm3] 3L_13312914_SNP [dm6]	C	T	5.305e^-5	0.897	INTERGENIC
2R	7805876	2R_7805876_SNP [dm3] 2R_11918371_SNP [dm6]	G	T	5.318e^-5	0.897	EXON CR44305
2R	12700082	2R_12700082_SNP [dm3] 2R_16812577_SNP [dm6]	C	T	5.424e^-5	0.897	EXON CR44379
2R	15390420	2R_15390420_SNP [dm3] 2R_19502915_SNP [dm6]	T	G	5.491e^-5	0.897	UPSTREAM CG11007 INTERGENIC	TF binding site mE1_TFBS_Ubx
X	1194700	X_1194700_SNP [dm3] X_1300667_SNP [dm6]	C	T	5.588e^-5	0.897	INTRON DAAM
2R	17174382	2R_17174382_SNP [dm3] 2R_21286877_SNP [dm6]	T	G	5.594e^-5	0.897	SYNONYMOUS_CODING CG10505	TF binding site mE1_TFBS_chinmo
3L	9299715	3L_9299715_SNP [dm3] 3L_9306615_SNP [dm6]	G	A	5.688e^-5	0.897	INTERGENIC
3R	23970432	3R_23970432_SNP [dm3] 3R_28144710_SNP [dm6]	T	C	5.865e^-5	0.897	INTERGENIC
X	15369912	X_15369912_SNP [dm3] X_15475879_SNP [dm6]	C	T	5.871e^-5	0.897	UPSTREAM CG6324 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Ubx
X	17192711	X_17192711_SNP [dm3] X_17298678_SNP [dm6]	T	C	5.871e^-5	0.897	INTRON CG5445 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17193957	X_17193957_SNP [dm3] X_17299924_SNP [dm6]	C	T	5.871e^-5	0.897	INTRON CG5445 & 1 other	TF binding site BDTNP1_TFBS_dl
X	17194537	X_17194537_SNP [dm3] X_17300504_SNP [dm6]	C	T	5.871e^-5	0.897	INTRON CG5445 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	1819782	X_1819782_SNP [dm3] X_1925749_SNP [dm6]	C	T	5.900e^-5	0.897	SYNONYMOUS_CODING Ocrl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5333948	2L_5333948_SNP [dm3] 2L_5333948_SNP [dm6]	C	T	6.018e^-5	0.897	INTRON fusl
3R	23967838	3R_23967838_SNP [dm3] 3R_28142116_SNP [dm6]	G	A	6.035e^-5	0.897	INTERGENIC
3R	23968105	3R_23968105_SNP [dm3] 3R_28142383_SNP [dm6]	T	C	6.035e^-5	0.897	INTERGENIC
3R	23969487	3R_23969487_SNP [dm3] 3R_28143765_SNP [dm6]	A	T	6.035e^-5	0.897	INTERGENIC
X	18041505	X_18041505_SNP [dm3] X_18147472_SNP [dm6]	T	G	6.102e^-5	0.897	INTERGENIC
2R	18346740	2R_18346740_SNP [dm3] 2R_22459235_SNP [dm6]	G	A	6.161e^-5	0.897	INTRON CG10384
3L	12306706	3L_12306706_SNP [dm3] 3L_12313606_SNP [dm6]	G	A	6.206e^-5	0.897	INTERGENIC
2R	5803049	2R_5803049_DEL [dm3] 2R_9915544_DEL [dm6]	GTTG	G	6.240e^-5	0.897	UTR_3_PRIME Mef2 DOWNSTREAM Mef2
X	14454530	X_14454530_SNP [dm3] X_14560497_SNP [dm6]	T	C	6.259e^-5	0.897	INTERGENIC
2R	18746172	2R_18746172_SNP [dm3] 2R_22858649_SNP [dm6]	C	A	6.264e^-5	0.897	UTR_5_PRIME inaD
3L	12306692	3L_12306692_SNP [dm3] 3L_12313592_SNP [dm6]	G	T	6.313e^-5	0.897	INTERGENIC
3R	10594934	3R_10594934_SNP [dm3] 3R_14769212_SNP [dm6]	C	A	6.343e^-5	0.897	INTRON jvl
2L	8075797	2L_8075797_SNP [dm3] 2L_8075797_SNP [dm6]	C	T	6.401e^-5	0.897	SYNONYMOUS_CODING Mcr
3R	23983839	3R_23983839_SNP [dm3] 3R_28158117_SNP [dm6]	C	T	6.545e^-5	0.897	INTRON CG34354	TF binding site mE1_TFBS_inv
3R	23983842	3R_23983842_SNP [dm3] 3R_28158120_SNP [dm6]	C	T	6.545e^-5	0.897	INTRON CG34354	TF binding site mE1_TFBS_inv
2L	11950777	2L_11950777_SNP [dm3] 2L_11950777_SNP [dm6]	T	C	6.568e^-5	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11950780	2L_11950780_SNP [dm3] 2L_11950780_SNP [dm6]	T	C	6.568e^-5	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11950788	2L_11950788_SNP [dm3] 2L_11950788_SNP [dm6]	G	A	6.568e^-5	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	13367289	X_13367289_DEL [dm3] X_13473256_DEL [dm6]	AA	A	6.599e^-5	0.897	INTRON Neto
2L	11950656	2L_11950656_SNP [dm3] 2L_11950656_SNP [dm6]	T	C	6.745e^-5	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11950664	2L_11950664_SNP [dm3] 2L_11950664_SNP [dm6]	A	G	6.745e^-5	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2536915	2L_2536915_SNP [dm3] 2L_2536915_SNP [dm6]	A	T	7.065e^-5	0.897	INTERGENIC
X	7557036	X_7557036_SNP [dm3] X_7663003_SNP [dm6]	C	G	7.113e^-5	0.897	NON_SYNONYMOUS_CODING ct	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12269509	X_12269509_SNP [dm3] X_12375476_SNP [dm6]	A	C	7.193e^-5	0.897	DOWNSTREAM Ir11a INTERGENIC
2L	9372892	2L_9372892_SNP [dm3] 2L_9372892_SNP [dm6]	T	A	7.269e^-5	0.897	UTR_3_PRIME Shawl DOWNSTREAM Shawl INTRON CR43865	TF binding site mE1_TFBS_cad
2L	9372927	2L_9372927_SNP [dm3] 2L_9372927_SNP [dm6]	T	G	7.269e^-5	0.897	UTR_3_PRIME Shawl DOWNSTREAM Shawl INTRON CR43865	TF binding site mE1_TFBS_cad
2L	9372940	2L_9372940_SNP [dm3] 2L_9372940_SNP [dm6]	C	T	7.269e^-5	0.897	UTR_3_PRIME Shawl DOWNSTREAM Shawl INTRON CR43865	TF binding site mE1_TFBS_cad
3R	15443871	3R_15443871_SNP [dm3] 3R_19618149_SNP [dm6]	G	A	7.278e^-5	0.897	SYNONYMOUS_CODING CG6231
2R	20147807	2R_20147807_SNP [dm3] 2R_24260284_SNP [dm6]	A	G	7.280e^-5	0.897	INTRON CG3376	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	12269476	X_12269476_SNP [dm3] X_12375443_SNP [dm6]	T	C	7.522e^-5	0.897	DOWNSTREAM CG2577 & 1 other INTERGENIC
2R	6141476	2R_6141476_SNP [dm3] 2R_10253971_SNP [dm6]	G	T	7.556e^-5	0.897	NON_SYNONYMOUS_CODING CG12913	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	6120733	2R_6120733_SNP [dm3] 2R_10233228_SNP [dm6]	A	G	7.560e^-5	0.897	SYNONYMOUS_CODING Hr46 UTR_5_PRIME Hr46 UTR_3_PRIME CG12912 DOWNSTREAM CG12912 INTRON Hr46	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	11777273	3R_11777273_SNP [dm3] 3R_15951551_SNP [dm6]	A	G	7.627e^-5	0.897	UPSTREAM CG31088 INTRON Sap47
3L	13305952	3L_13305952_SNP [dm3] 3L_13312852_SNP [dm6]	T	A	7.790e^-5	0.897	INTERGENIC
2L	5261149	2L_5261149_SNP [dm3] 2L_5261149_SNP [dm6]	T	C	7.850e^-5	0.897	INTRON tkv
X	9942744	X_9942744_DEL [dm3] X_10048711_DEL [dm6]	GCCACAACTTTAA...	G	7.943e^-5	0.897	UPSTREAM CR45185 & 1 other INTRON Cht6
X	9942764	X_9942764_SNP [dm3] X_10048731_SNP [dm6]	T	A	7.943e^-5	0.897	UPSTREAM CR45185 & 1 other INTRON Cht6
2R	5338514	2R_5338514_SNP [dm3] 2R_9451009_SNP [dm6]	T	G	8.086e^-5	0.897	INTRON Camta
3R	22773399	3R_22773399_SNP [dm3] 3R_26947677_SNP [dm6]	G	A	8.089e^-5	0.897	UPSTREAM CG18472 & 2 others DOWNSTREAM CG14252 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	22773405	3R_22773405_SNP [dm3] 3R_26947683_SNP [dm6]	A	G	8.089e^-5	0.897	UPSTREAM CG18472 & 2 others DOWNSTREAM CG14252 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22773425	3R_22773425_SNP [dm3] 3R_26947703_SNP [dm6]	T	G	8.089e^-5	0.897	UPSTREAM CG18472 & 2 others DOWNSTREAM CG14252 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12871674	X_12871674_SNP [dm3] X_12977641_SNP [dm6]	C	A	8.121e^-5	0.897	INTERGENIC
2L	2536916	2L_2536916_SNP [dm3] 2L_2536916_SNP [dm6]	G	A	8.124e^-5	0.897	INTERGENIC
2R	6132059	2R_6132059_SNP [dm3] 2R_10244554_SNP [dm6]	A	G	8.156e^-5	0.897	SYNONYMOUS_CODING Hdc
2R	13397536	2R_13397536_SNP [dm3] 2R_17510031_SNP [dm6]	G	C	8.182e^-5	0.897	NON_SYNONYMOUS_CODING CG34193
X	14211332	X_14211332_SNP [dm3] X_14317299_SNP [dm6]	T	A	8.204e^-5	0.897	UPSTREAM betaNACtes6 INTERGENIC
3R	13659170	3R_13659170_DEL [dm3] 3R_17833448_DEL [dm6]	CCAGTGGTC	C	8.263e^-5	0.897	INTRON tinc	TF binding site BDTNP1_TFBS_dl
X	17265831	X_17265831_SNP [dm3] X_17371798_SNP [dm6]	G	A	8.275e^-5	0.897	INTERGENIC
3L	6617881	3L_6617881_SNP [dm3] 3L_6624781_SNP [dm6]	T	G	8.338e^-5	0.897	INTRON GluRIA
2L	3432427	2L_3432427_SNP [dm3] 2L_3432427_SNP [dm6]	G	A	8.376e^-5	0.897	INTERGENIC
3R	5358819	3R_5358819_INS [dm3] 3R_9533097_INS [dm6]	G	GATGGGCTGCTGCTCTCGCT...	8.428e^-5	0.897	UPSTREAM by INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_Trl
3R	5358822	3R_5358822_SNP [dm3] 3R_9533100_SNP [dm6]	A	C	8.428e^-5	0.897	UPSTREAM by INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_Trl
2R	15390375	2R_15390375_SNP [dm3] 2R_19502870_SNP [dm6]	T	A	8.453e^-5	0.897	UPSTREAM CG11007 INTERGENIC	TF binding site mE1_TFBS_Ubx
2R	15390377	2R_15390377_SNP [dm3] 2R_19502872_SNP [dm6]	C	A	8.453e^-5	0.897	UPSTREAM CG11007 INTERGENIC	TF binding site mE1_TFBS_Ubx
3L	4121556	3L_4121556_SNP [dm3] 3L_4121556_SNP [dm6]	T	A	8.729e^-5	0.897	INTRON Chd64
2R	18024616	2R_18024616_SNP [dm3] 2R_22137111_SNP [dm6]	G	A	8.877e^-5	0.897	UTR_5_PRIME a UPSTREAM a INTRON a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3R	23968114	3R_23968114_SNP [dm3] 3R_28142392_SNP [dm6]	T	C	8.945e^-5	0.897	INTERGENIC
3R	23983824	3R_23983824_SNP [dm3] 3R_28158102_SNP [dm6]	A	G	8.957e^-5	0.897	INTRON CG34354	TF binding site mE1_TFBS_inv
3L	2963806	3L_2963806_SNP [dm3] 3L_2963806_SNP [dm6]	T	G	9.146e^-5	0.897	DOWNSTREAM Or63a INTERGENIC
3L	2963812	3L_2963812_SNP [dm3] 3L_2963812_SNP [dm6]	T	A	9.146e^-5	0.897	DOWNSTREAM Or63a INTERGENIC
2R	3121161	2R_3121161_SNP [dm3] 2R_7233656_SNP [dm6]	G	A	9.185e^-5	0.897	SYNONYMOUS_CODING Or43a	TF binding site mE1_TFBS_chinmo
X	18041765	X_18041765_SNP [dm3] X_18147732_SNP [dm6]	G	A	9.332e^-5	0.897	INTERGENIC
2R	14242602	2R_14242602_INS [dm3] 2R_18355097_INS [dm6]	A	AA	9.372e^-5	0.897	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	4298697	X_4298697_SNP [dm3] X_4404664_SNP [dm6]	T	C	9.457e^-5	0.897	INTRON CR32773
X	4298699	X_4298699_SNP [dm3] X_4404666_SNP [dm6]	A	C	9.457e^-5	0.897	INTRON CR32773
X	4298700	X_4298700_SNP [dm3] X_4404667_SNP [dm6]	A	T	9.457e^-5	0.897	INTRON CR32773
3L	2963785	3L_2963785_SNP [dm3] 3L_2963785_SNP [dm6]	A	G	9.611e^-5	0.897	UTR_3_PRIME Or63a
2R	7649747	2R_7649747_SNP [dm3] 2R_11762242_SNP [dm6]	A	G	9.628e^-5	0.897	INTRON ths
2L	11386556	2L_11386556_SNP [dm3] 2L_11386556_SNP [dm6]	A	C	9.635e^-5	0.897	INTERGENIC	regulatory region REDfly_CRMs
2L	11950747	2L_11950747_SNP [dm3] 2L_11950747_SNP [dm6]	T	A	9.635e^-5	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	5359045	3R_5359045_SNP [dm3] 3R_9533323_SNP [dm6]	T	A	9.657e^-5	0.897	UPSTREAM by INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3R	5359104	3R_5359104_SNP [dm3] 3R_9533382_SNP [dm6]	A	C	9.657e^-5	0.897	UPSTREAM by INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3L	12926499	3L_12926499_SNP [dm3] 3L_12933399_SNP [dm6]	A	G	9.692e^-5	0.897	INTERGENIC
2R	8527533	2R_8527533_SNP [dm3] 2R_12640028_SNP [dm6]	T	G	9.737e^-5	0.897	DOWNSTREAM CG8785 INTRON Iswi	TF binding site mE1_TFBS_cad
2R	8527537	2R_8527537_SNP [dm3] 2R_12640032_SNP [dm6]	A	T	9.737e^-5	0.897	DOWNSTREAM CG8785 INTRON Iswi	TF binding site mE1_TFBS_cad
2R	6140510	2R_6140510_SNP [dm3] 2R_10253005_SNP [dm6]	A	T	9.873e^-5	0.897	NON_SYNONYMOUS_CODING CG12913 UPSTREAM Syb	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	23985344	3R_23985344_SNP [dm3] 3R_28159622_SNP [dm6]	C	A	9.942e^-5	0.897	INTRON CG34354
3R	12838381	3R_12838381_SNP [dm3] 3R_17012659_SNP [dm6]	T	A	9.948e^-5	0.897	DOWNSTREAM CG8907 INTERGENIC
3L	16066587	3L_16066587_SNP [dm3] 3L_16073487_SNP [dm6]	C	A	1.012e^-4	0.897	INTRON Mbs
3R	24368422	3R_24368422_SNP [dm3] 3R_28542700_SNP [dm6]	G	C	1.019e^-4	0.897	SYNONYMOUS_CODING CG12413
3L	13305810	3L_13305810_SNP [dm3] 3L_13312710_SNP [dm6]	A	T	1.022e^-4	0.897	INTERGENIC
2R	6122654	2R_6122654_SNP [dm3] 2R_10235149_SNP [dm6]	C	A	1.035e^-4	0.897	UPSTREAM CG12912 & 1 other INTRON Hr46
2R	16796028	2R_16796028_SNP [dm3] 2R_20908523_SNP [dm6]	G	C	1.048e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_prd
2L	11664221	2L_11664221_SNP [dm3] 2L_11664221_SNP [dm6]	C	T	1.050e^-4	0.897	DOWNSTREAM CG44477 INTERGENIC
3L	2824213	3L_2824213_SNP [dm3] 3L_2824213_SNP [dm6]	C	T	1.051e^-4	0.897	INTRON CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	4208250	2L_4208250_INS [dm3] 2L_4208250_INS [dm6]	A	AA	1.058e^-4	0.897	INTRON ft	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9446088	2L_9446088_SNP [dm3] 2L_9446088_SNP [dm6]	T	G	1.066e^-4	0.897	INTRON numb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	15692813	3L_15692813_INS [dm3] 3L_15699713_INS [dm6]	T	TCTAT	1.070e^-4	0.897	UTR_5_PRIME comm2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	15390348	2R_15390348_SNP [dm3] 2R_19502843_SNP [dm6]	C	T	1.075e^-4	0.897	UPSTREAM CG11007 INTERGENIC	TF binding site mE1_TFBS_Ubx
3R	18161011	3R_18161011_SNP [dm3] 3R_22335289_SNP [dm6]	T	G	1.079e^-4	0.897	INTRON CG5388
2L	4935116	2L_4935116_SNP [dm3] 2L_4935116_SNP [dm6]	T	C	1.080e^-4	0.897	NON_SYNONYMOUS_CODING hoe2
3R	7717384	3R_7717384_SNP [dm3] 3R_11891662_SNP [dm6]	G	A	1.091e^-4	0.897	SYNONYMOUS_CODING CG31368 DOWNSTREAM CG6971
X	18419032	X_18419032_SNP [dm3] X_18524999_SNP [dm6]	G	T	1.091e^-4	0.897	INTRON Bx
3R	5358219	3R_5358219_SNP [dm3] 3R_9532497_SNP [dm6]	G	C	1.102e^-4	0.897	NON_SYNONYMOUS_CODING by	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_Trl
3L	16949799	3L_16949799_SNP [dm3] 3L_16956699_SNP [dm6]	C	A	1.124e^-4	0.897	UPSTREAM Nc73EF INTRON Nc73EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22773375	3R_22773375_SNP [dm3] 3R_26947653_SNP [dm6]	G	T	1.125e^-4	0.897	UPSTREAM CG18472 & 2 others DOWNSTREAM CG14252 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	18174301	3R_18174301_SNP [dm3] 3R_22348579_SNP [dm6]	T	A	1.133e^-4	0.897	INTERGENIC
X	18041239	X_18041239_SNP [dm3] X_18147206_SNP [dm6]	A	C	1.136e^-4	0.897	INTERGENIC
3R	7711602	3R_7711602_SNP [dm3] 3R_11885880_SNP [dm6]	G	A	1.142e^-4	0.897	INTRON CG31368 & 1 other	TF binding site BDTNP1_TFBS_twi
2R	17390951	2R_17390951_SNP [dm3] 2R_21503446_SNP [dm6]	G	A	1.156e^-4	0.897	INTRON MESK2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_Trl
3R	23971950	3R_23971950_SNP [dm3] 3R_28146228_SNP [dm6]	A	G	1.170e^-4	0.897	UPSTREAM CG34354 INTERGENIC
3R	23971995	3R_23971995_SNP [dm3] 3R_28146273_SNP [dm6]	A	T	1.170e^-4	0.897	UPSTREAM CG34354 INTERGENIC
3R	23972032	3R_23972032_SNP [dm3] 3R_28146310_SNP [dm6]	G	A	1.170e^-4	0.897	UPSTREAM CG34354 INTERGENIC
3R	23972047	3R_23972047_SNP [dm3] 3R_28146325_SNP [dm6]	A	G	1.170e^-4	0.897	UPSTREAM CG34354 INTERGENIC
3R	23972050	3R_23972050_SNP [dm3] 3R_28146328_SNP [dm6]	T	C	1.170e^-4	0.897	UPSTREAM CG34354 INTERGENIC
3R	23972072	3R_23972072_SNP [dm3] 3R_28146350_SNP [dm6]	T	C	1.170e^-4	0.897	UPSTREAM CG34354 INTERGENIC
2L	7414887	2L_7414887_SNP [dm3] 2L_7414887_SNP [dm6]	G	C	1.173e^-4	0.897	INTRON chm
3R	15444068	3R_15444068_SNP [dm3] 3R_19618346_SNP [dm6]	C	T	1.181e^-4	0.897	INTRON CG6231
2R	6132071	2R_6132071_SNP [dm3] 2R_10244566_SNP [dm6]	G	A	1.181e^-4	0.897	SYNONYMOUS_CODING Hdc
X	9172719	X_9172719_SNP [dm3] X_9278686_SNP [dm6]	G	A	1.204e^-4	0.897	SYNONYMOUS_CODING c11.1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23964620	3R_23964620_INS [dm3] 3R_28138898_INS [dm6]	C	CTAAC	1.204e^-4	0.897	INTERGENIC
2L	4333472	2L_4333472_SNP [dm3] 2L_4333472_SNP [dm6]	T	C	1.207e^-4	0.897	UPSTREAM Atet INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	6134606	2R_6134606_SNP [dm3] 2R_10247101_SNP [dm6]	C	T	1.209e^-4	0.897	SYNONYMOUS_CODING CG12209 UPSTREAM CG12914	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3819627	3L_3819627_SNP [dm3] 3L_3819627_SNP [dm6]	A	G	1.216e^-4	0.897	INTRON enc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	17249513	X_17249513_SNP [dm3] X_17355480_SNP [dm6]	G	A	1.248e^-4	0.897	INTERGENIC
2L	12361231	2L_12361231_SNP [dm3] 2L_12361231_SNP [dm6]	T	A	1.250e^-4	0.897	INTRON bru-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	12871624	X_12871624_SNP [dm3] X_12977591_SNP [dm6]	C	T	1.254e^-4	0.897	INTERGENIC
2R	6607533	2R_6607533_SNP [dm3] 2R_10720028_SNP [dm6]	C	T	1.256e^-4	0.897	SYNONYMOUS_CODING stan UTR_3_PRIME stan
3L	8575957	3L_8575957_SNP [dm3] 3L_8582857_SNP [dm6]	C	T	1.264e^-4	0.897	UPSTREAM CG43078 INTRON CG43078
X	12126298	X_12126298_INS [dm3] X_12232265_INS [dm6]	G	GCATAATGCCTGCATTCG...	1.264e^-4	0.897	INTRON Ten-a
3R	23984308	3R_23984308_DEL [dm3] 3R_28158586_DEL [dm6]	ATACACATACTACA...	A	1.269e^-4	0.897	INTRON CG34354
3R	23965572	3R_23965572_SNP [dm3] 3R_28139850_SNP [dm6]	T	G	1.283e^-4	0.897	INTERGENIC
X	16032294	X_16032294_SNP [dm3] X_16138261_SNP [dm6]	T	C	1.284e^-4	0.897	INTRON disco-r
3L	5949062	3L_5949062_SNP [dm3] 3L_5955962_SNP [dm6]	C	T	1.284e^-4	0.897	INTERGENIC
3R	23972534	3R_23972534_SNP [dm3] 3R_28146812_SNP [dm6]	T	G	1.284e^-4	0.897	UPSTREAM CG34354 INTERGENIC
X	17265771	X_17265771_DEL [dm3] X_17371738_DEL [dm6]	CATGC	C	1.286e^-4	0.897	INTERGENIC
2R	17174388	2R_17174388_SNP [dm3] 2R_21286883_SNP [dm6]	A	G	1.293e^-4	0.897	SYNONYMOUS_CODING CG10505	TF binding site mE1_TFBS_chinmo
3L	13306410	3L_13306410_SNP [dm3] 3L_13313310_SNP [dm6]	C	A	1.295e^-4	0.897	INTERGENIC
X	19574254	X_19574254_SNP [dm3] X_19680221_SNP [dm6]	A	T	1.296e^-4	0.897	INTRON dome	regulatory region REDfly_CRMs
3L	19967327	3L_19967327_SNP [dm3] 3L_19974227_SNP [dm6]	T	C	1.302e^-4	0.897	INTRON Ac76E
3L	5193337	3L_5193337_DEL [dm3] 3L_5200237_DEL [dm6]	TT	T	1.302e^-4	0.897	INTRON shep
3L	4515116	3L_4515116_SNP [dm3] 3L_4515116_SNP [dm6]	G	A	1.302e^-4	0.897	SYNONYMOUS_CODING Tie	TF binding site mE1_TFBS_chinmo
2L	16574136	2L_16574136_SNP [dm3] 2L_16574136_SNP [dm6]	T	C	1.304e^-4	0.897	INTRON CG42389
X	12269415	X_12269415_SNP [dm3] X_12375382_SNP [dm6]	T	C	1.315e^-4	0.897	DOWNSTREAM CG2577 & 1 other INTERGENIC
2L	721630	2L_721630_DEL [dm3] 2L_721630_DEL [dm6]	CAACTC	C	1.317e^-4	0.897	INTERGENIC
2L	13115085	2L_13115085_SNP [dm3] 2L_13115085_SNP [dm6]	A	G	1.321e^-4	0.897	INTERGENIC
X	12245464	X_12245464_SNP [dm3] X_12351431_SNP [dm6]	A	T	1.323e^-4	0.897	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	19041430	2R_19041430_DEL [dm3] 2R_23153907_DEL [dm6]	ACCCCAACGGATCAA...	A	1.330e^-4	0.897	UTR_5_PRIME CG9899 DOWNSTREAM CG43207
2L	4332182	2L_4332182_SNP [dm3] 2L_4332182_SNP [dm6]	G	A	1.350e^-4	0.897	DOWNSTREAM CG16857 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_Trl
3L	3820269	3L_3820269_SNP [dm3] 3L_3820269_SNP [dm6]	A	C	1.352e^-4	0.897	INTRON enc
3R	12838334	3R_12838334_SNP [dm3] 3R_17012612_SNP [dm6]	T	C	1.355e^-4	0.897	DOWNSTREAM CG8907 INTERGENIC
3R	12838813	3R_12838813_SNP [dm3] 3R_17013091_SNP [dm6]	T	C	1.355e^-4	0.897	DOWNSTREAM CG8907 INTERGENIC
2R	5410949	2R_5410949_SNP [dm3] 2R_9523444_SNP [dm6]	A	G	1.361e^-4	0.897	SYNONYMOUS_CODING brp INTRON brp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20414514	3R_20414514_SNP [dm3] 3R_24588792_SNP [dm6]	G	A	1.361e^-4	0.897	UPSTREAM mld INTRON mld	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2R	15390333	2R_15390333_SNP [dm3] 2R_19502828_SNP [dm6]	C	T	1.363e^-4	0.897	UPSTREAM CG11007 INTERGENIC	TF binding site mE1_TFBS_Ubx
3L	7096241	3L_7096241_SNP [dm3] 3L_7103141_SNP [dm6]	A	C	1.370e^-4	0.897	INTRON form3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6363373	3L_6363373_SNP [dm3] 3L_6370273_SNP [dm6]	G	A	1.373e^-4	0.897	EXON CR45419
3R	12056364	3R_12056364_SNP [dm3] 3R_16230642_SNP [dm6]	A	G	1.381e^-4	0.897	INTRON tara	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
2R	13672694	2R_13672694_SNP [dm3] 2R_17785189_SNP [dm6]	T	A	1.386e^-4	0.897	UPSTREAM aft INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19749310	2R_19749310_DEL [dm3] 2R_23861787_DEL [dm6]	TT	A	1.390e^-4	0.897	UTR_5_PRIME TBPH INTRON TBPH	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	19749313	2R_19749313_SNP [dm3] 2R_23861790_SNP [dm6]	G	C	1.390e^-4	0.897	UTR_5_PRIME TBPH INTRON TBPH	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	6964581	2R_6964581_SNP [dm3] 2R_11077076_SNP [dm6]	C	G	1.395e^-4	0.897	INTRON luna	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4647143	3L_4647143_SNP [dm3] 3L_4647143_SNP [dm6]	A	T	1.395e^-4	0.897	INTRON axo
3L	4647151	3L_4647151_SNP [dm3] 3L_4647151_SNP [dm6]	A	C	1.395e^-4	0.897	INTRON axo
2L	14730933	2L_14730933_SNP [dm3] 2L_14730933_SNP [dm6]	A	T	1.400e^-4	0.897	UPSTREAM CG42685 INTERGENIC
3R	26065823	3R_26065823_SNP [dm3] 3R_30240101_SNP [dm6]	A	T	1.405e^-4	0.897	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2L	15202233	2L_15202233_INS [dm3] 2L_15202233_INS [dm6]	T	TA	1.438e^-4	0.897	UPSTREAM CR43357 & 1 other INTERGENIC
2L	15202236	2L_15202236_SNP [dm3] 2L_15202236_SNP [dm6]	A	C	1.438e^-4	0.897	UPSTREAM CR43357 & 1 other INTERGENIC
2R	17427683	2R_17427683_SNP [dm3] 2R_21540178_SNP [dm6]	G	T	1.443e^-4	0.897	SYNONYMOUS_CODING CG30283 UPSTREAM CG33226 INTRON Egfr	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	12963905	3L_12963905_SNP [dm3] 3L_12970805_SNP [dm6]	G	A	1.451e^-4	0.897	DOWNSTREAM CG10748 INTERGENIC
3L	12964089	3L_12964089_SNP [dm3] 3L_12970989_SNP [dm6]	G	C	1.451e^-4	0.897	DOWNSTREAM CG10748 INTERGENIC
3L	12964140	3L_12964140_DEL [dm3] 3L_12971040_DEL [dm6]	ATTCAAACATTCGGTTGCCA...	A	1.451e^-4	0.897	DOWNSTREAM CG10748 INTERGENIC
X	18418712	X_18418712_INS [dm3] X_18524679_INS [dm6]	C	CACTC	1.451e^-4	0.897	INTRON Bx
2L	9129720	2L_9129720_SNP [dm3] 2L_9129720_SNP [dm6]	A	T	1.453e^-4	0.897	INTRON CG32982	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2348301	3L_2348301_SNP [dm3] 3L_2348301_SNP [dm6]	T	A	1.454e^-4	0.897	INTERGENIC
2L	6169308	2L_6169308_SNP [dm3] 2L_6169308_SNP [dm6]	T	C	1.477e^-4	0.897	INTERGENIC
3R	5313746	3R_5313746_SNP [dm3] 3R_9488024_SNP [dm6]	C	A	1.478e^-4	0.897	INTRON CG16779	TF binding site BDTNP1_TFBS_dl
3L	17931074	3L_17931074_SNP [dm3] 3L_17937974_SNP [dm6]	G	T	1.483e^-4	0.897	INTRON CG43174
3L	17936530	3L_17936530_DEL [dm3] 3L_17943430_DEL [dm6]	ATTTTTGCTAGAACA...	A	1.483e^-4	0.897	INTRON CG43174
3R	24162017	3R_24162017_DEL [dm3] 3R_28336295_DEL [dm6]	TT	T	1.483e^-4	0.897	UTR_5_PRIME larp UPSTREAM larp DOWNSTREAM Gfat2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	17427686	2R_17427686_SNP [dm3] 2R_21540181_SNP [dm6]	C	G	1.503e^-4	0.897	SYNONYMOUS_CODING CG30283 UPSTREAM CG33226 INTRON Egfr	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	23962867	3R_23962867_SNP [dm3] 3R_28137145_SNP [dm6]	C	T	1.504e^-4	0.897	INTERGENIC
3R	25354020	3R_25354020_SNP [dm3] 3R_29528298_SNP [dm6]	A	T	1.511e^-4	0.897	INTERGENIC	TF binding site mE1_TFBS_inv
X	19573441	X_19573441_SNP [dm3] X_19679408_SNP [dm6]	A	G	1.515e^-4	0.897	INTRON dome	TF binding site mE1_TFBS_cad
2R	21102240	2R_21102240_SNP [dm3] 2R_25214717_SNP [dm6]	T	A	1.518e^-4	0.897	INTRON CG9380	regulatory region FlyBase TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Trl
3R	12838280	3R_12838280_SNP [dm3] 3R_17012558_SNP [dm6]	G	A	1.521e^-4	0.897	DOWNSTREAM CG8907 INTERGENIC
3L	7236924	3L_7236924_SNP [dm3] 3L_7243824_SNP [dm6]	G	T	1.530e^-4	0.897	UPSTREAM mei-P22 DOWNSTREAM Neos INTRON mRpL50	TF binding site mE1_TFBS_cad
2L	4343247	2L_4343247_SNP [dm3] 2L_4343247_SNP [dm6]	G	A	1.532e^-4	0.897	SYNONYMOUS_CODING Atet UPSTREAM mir-1005	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4333351	2L_4333351_SNP [dm3] 2L_4333351_SNP [dm6]	C	T	1.543e^-4	0.897	UPSTREAM Atet INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	4688651	3L_4688651_SNP [dm3] 3L_4688651_SNP [dm6]	A	G	1.552e^-4	0.897	SYNONYMOUS_CODING CG7514 DOWNSTREAM CG18418
2R	7805749	2R_7805749_SNP [dm3] 2R_11918244_SNP [dm6]	C	T	1.557e^-4	0.897	EXON CR44305
2L	11950563	2L_11950563_SNP [dm3] 2L_11950563_SNP [dm6]	A	G	1.564e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15648076	2L_15648076_SNP [dm3] 2L_15648076_SNP [dm6]	A	C	1.565e^-4	0.897	INTRON CG4587
3R	10877925	3R_10877925_SNP [dm3] 3R_15052203_SNP [dm6]	C	T	1.567e^-4	0.897	INTERGENIC
2L	4431076	2L_4431076_SNP [dm3] 2L_4431076_SNP [dm6]	A	C	1.578e^-4	0.897	INTRON CG15431
2L	6163753	2L_6163753_SNP [dm3] 2L_6163753_SNP [dm6]	T	C	1.587e^-4	0.897	INTERGENIC
X	5580367	X_5580367_SNP [dm3] X_5686334_SNP [dm6]	T	C	1.604e^-4	0.897	SYNONYMOUS_CODING CG3160
2R	6122621	2R_6122621_SNP [dm3] 2R_10235116_SNP [dm6]	T	A	1.606e^-4	0.897	UPSTREAM CG12912 & 1 other INTRON Hr46
2R	19751815	2R_19751815_SNP [dm3] 2R_23864292_SNP [dm6]	C	T	1.614e^-4	0.897	SYNONYMOUS_CODING CG4585	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
2R	19775297	2R_19775297_SNP [dm3] 2R_23887774_SNP [dm6]	A	G	1.624e^-4	0.897	DOWNSTREAM Dcp1 INTRON CG5597	TF binding site mE1_TFBS_cad
3R	24465016	3R_24465016_SNP [dm3] 3R_28639294_SNP [dm6]	T	C	1.628e^-4	0.897	DOWNSTREAM CG9988 INTERGENIC
3L	13305991	3L_13305991_DEL [dm3] 3L_13312891_DEL [dm6]	GAATA	G	1.629e^-4	0.897	INTERGENIC
3L	13306101	3L_13306101_SNP [dm3] 3L_13313001_SNP [dm6]	A	T	1.629e^-4	0.897	INTERGENIC
3R	9897229	3R_9897229_SNP [dm3] 3R_14071507_SNP [dm6]	A	T	1.634e^-4	0.897	INTRON foxo
2R	7401614	2R_7401614_SNP [dm3] 2R_11514109_SNP [dm6]	C	T	1.636e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da
3L	13116322	3L_13116322_SNP [dm3] 3L_13123222_SNP [dm6]	C	T	1.637e^-4	0.897	INTERGENIC
2R	3117022	2R_3117022_SNP [dm3] 2R_7229517_SNP [dm6]	T	C	1.638e^-4	0.897	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	4348619	2L_4348619_SNP [dm3] 2L_4348619_SNP [dm6]	C	G	1.650e^-4	0.897	UPSTREAM CR44699 DOWNSTREAM CR44697 EXON CR44698	TF binding site BDTNP1_TFBS_twi
3R	18711687	3R_18711687_SNP [dm3] 3R_22885965_SNP [dm6]	C	T	1.653e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	11474328	3L_11474328_SNP [dm3] 3L_11481228_SNP [dm6]	G	A	1.653e^-4	0.897	INTERGENIC
2L	15774690	2L_15774690_SNP [dm3] 2L_15774690_SNP [dm6]	G	A	1.663e^-4	0.897	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	6976859	3L_6976859_SNP [dm3] 3L_6983759_SNP [dm6]	G	A	1.664e^-4	0.897	UTR_3_PRIME CG32388 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6976860	3L_6976860_SNP [dm3] 3L_6983760_SNP [dm6]	A	G	1.664e^-4	0.897	UTR_3_PRIME CG32388 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6976863	3L_6976863_SNP [dm3] 3L_6983763_SNP [dm6]	T	C	1.664e^-4	0.897	UTR_3_PRIME CG32388 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5338508	2R_5338508_SNP [dm3] 2R_9451003_SNP [dm6]	G	T	1.666e^-4	0.897	INTRON Camta
2R	5338509	2R_5338509_SNP [dm3] 2R_9451004_SNP [dm6]	G	T	1.666e^-4	0.897	INTRON Camta
2R	5338511	2R_5338511_INS [dm3] 2R_9451006_INS [dm6]	A	AA	1.666e^-4	0.897	INTRON Camta
2R	5338519	2R_5338519_INS [dm3] 2R_9451014_INS [dm6]	A	AATCATATATTCT...	1.666e^-4	0.897	INTRON Camta
3R	14979648	3R_14979648_SNP [dm3] 3R_19153926_SNP [dm6]	G	A	1.676e^-4	0.897	UPSTREAM CG5835 DOWNSTREAM CG11779 INTERGENIC
3R	19037368	3R_19037368_SNP [dm3] 3R_23211646_SNP [dm6]	A	G	1.692e^-4	0.897	INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cnc mE1_TFBS_HSA
2L	11950757	2L_11950757_SNP [dm3] 2L_11950757_SNP [dm6]	A	C	1.708e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	3585518	3R_3585518_SNP [dm3] 3R_7759796_SNP [dm6]	A	G	1.716e^-4	0.897	START_GAINED Sp7 UTR_5_PRIME Sp7 DOWNSTREAM CG10919
3L	4515439	3L_4515439_SNP [dm3] 3L_4515439_SNP [dm6]	C	A	1.717e^-4	0.897	INTRON Tie
3R	20414796	3R_20414796_SNP [dm3] 3R_24589074_SNP [dm6]	G	A	1.724e^-4	0.897	UPSTREAM mld INTRON mld	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	7532725	3R_7532725_SNP [dm3] 3R_11707003_SNP [dm6]	C	A	1.732e^-4	0.897	INTERGENIC
3L	6808231	3L_6808231_SNP [dm3] 3L_6815131_SNP [dm6]	T	A	1.734e^-4	0.897	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	10956612	2L_10956612_DEL [dm3] 2L_10956612_DEL [dm6]	AAAC	A	1.740e^-4	0.897	INTRON dpr2
2L	10956655	2L_10956655_SNP [dm3] 2L_10956655_SNP [dm6]	T	G	1.740e^-4	0.897	INTRON dpr2
2R	19750220	2R_19750220_SNP [dm3] 2R_23862697_SNP [dm6]	C	T	1.742e^-4	0.897	UPSTREAM TBPH DOWNSTREAM CG4585 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3R	7711997	3R_7711997_SNP [dm3] 3R_11886275_SNP [dm6]	T	A	1.749e^-4	0.897	INTRON CG31368 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3L	6495172	3L_6495172_SNP [dm3] 3L_6502072_SNP [dm6]	C	T	1.759e^-4	0.897	INTRON sfl
X	18729426	X_18729426_SNP [dm3] X_18835393_SNP [dm6]	A	G	1.760e^-4	0.897	INTRON Pvf1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	20414581	3R_20414581_SNP [dm3] 3R_24588859_SNP [dm6]	G	A	1.767e^-4	0.897	UPSTREAM mld INTRON mld	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3L	8196658	3L_8196658_SNP [dm3] 3L_8203558_SNP [dm6]	C	T	1.770e^-4	0.897	DOWNSTREAM CG13679 INTERGENIC
3L	1122580	3L_1122580_SNP [dm3] 3L_1122580_SNP [dm6]	C	T	1.777e^-4	0.897	INTERGENIC
2L	4253024	2L_4253024_SNP [dm3] 2L_4253024_SNP [dm6]	C	A	1.783e^-4	0.897	INTERGENIC
2L	11388322	2L_11388322_SNP [dm3] 2L_11388322_SNP [dm6]	G	T	1.794e^-4	0.897	EXON CR43681	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
X	17077961	X_17077961_SNP [dm3] X_17183928_SNP [dm6]	C	G	1.798e^-4	0.897	UPSTREAM CR44026 INTRON baz
X	17077975	X_17077975_SNP [dm3] X_17183942_SNP [dm6]	A	G	1.798e^-4	0.897	UPSTREAM CR44026 INTRON baz
3L	12803170	3L_12803170_SNP [dm3] 3L_12810070_SNP [dm6]	C	G	1.801e^-4	0.897	UTR_3_PRIME CG32110 INTRON Sap130	TF binding site mE1_TFBS_cad
3L	7582213	3L_7582213_SNP [dm3] 3L_7589113_SNP [dm6]	T	C	1.814e^-4	0.897	SYNONYMOUS_CODING CG7716
2L	13003769	2L_13003769_SNP [dm3] 2L_13003769_SNP [dm6]	C	A	1.831e^-4	0.897	UPSTREAM Tor INTRON Vha68-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	23971993	3R_23971993_SNP [dm3] 3R_28146271_SNP [dm6]	A	G	1.834e^-4	0.897	UPSTREAM CG34354 INTERGENIC
3L	7388013	3L_7388013_SNP [dm3] 3L_7394913_SNP [dm6]	C	A	1.838e^-4	0.897	INTRON CG8563
2R	3082705	2R_3082705_SNP [dm3] 2R_7195200_SNP [dm6]	C	T	1.839e^-4	0.897	INTRON pk
3L	806095	3L_806095_SNP [dm3] 3L_806095_SNP [dm6]	A	C	1.845e^-4	0.897	INTERGENIC
3R	27455754	3R_27455754_SNP [dm3] 3R_31630032_SNP [dm6]	A	G	1.847e^-4	0.897	INTRON kek6
3L	13306351	3L_13306351_DEL [dm3] 3L_13313251_DEL [dm6]	TT	A	1.850e^-4	0.897	INTERGENIC
3L	17141572	3L_17141572_SNP [dm3] 3L_17148472_SNP [dm6]	T	G	1.850e^-4	0.897	UPSTREAM Rbp6 INTRON Rbp6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	12245347	X_12245347_SNP [dm3] X_12351314_SNP [dm6]	T	C	1.867e^-4	0.897	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	12245349	X_12245349_SNP [dm3] X_12351316_SNP [dm6]	T	A	1.867e^-4	0.897	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	15443904	3R_15443904_SNP [dm3] 3R_19618182_SNP [dm6]	G	A	1.867e^-4	0.897	SYNONYMOUS_CODING CG6231
3R	25506832	3R_25506832_SNP [dm3] 3R_29681110_SNP [dm6]	G	C	1.878e^-4	0.897	DOWNSTREAM Cap-D2 INTRON CG7582	TF binding site mE1_TFBS_cad
3R	21539652	3R_21539652_SNP [dm3] 3R_25713930_SNP [dm6]	G	A	1.882e^-4	0.897	SYNONYMOUS_CODING LpR2
3L	16491320	3L_16491320_SNP [dm3] 3L_16498220_SNP [dm6]	A	C	1.884e^-4	0.897	INTRON CG43373 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9621939	2L_9621939_SNP [dm3] 2L_9621939_SNP [dm6]	A	T	1.889e^-4	0.897	INTRON GlcAT-S
2L	9621941	2L_9621941_SNP [dm3] 2L_9621941_SNP [dm6]	C	T	1.889e^-4	0.897	INTRON GlcAT-S
2L	3198021	2L_3198021_SNP [dm3] 2L_3198021_SNP [dm6]	T	C	1.895e^-4	0.897	INTRON CG34393
3R	23970144	3R_23970144_DEL [dm3] 3R_28144422_DEL [dm6]	TCCC	T	1.903e^-4	0.897	INTERGENIC
2R	4885259	2R_4885259_DEL [dm3] 2R_8997754_DEL [dm6]	GG	G	1.904e^-4	0.897	INTRON Np	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	5358523	3R_5358523_SNP [dm3] 3R_9532801_SNP [dm6]	A	T	1.910e^-4	0.897	NON_SYNONYMOUS_CODING by	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2L	10329370	2L_10329370_SNP [dm3] 2L_10329370_SNP [dm6]	T	C	1.918e^-4	0.897	SYNONYMOUS_CODING CG5375
3R	17269147	3R_17269147_SNP [dm3] 3R_21443425_SNP [dm6]	T	A	1.919e^-4	0.897	INTRON lbe	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	17269151	3R_17269151_SNP [dm3] 3R_21443429_SNP [dm6]	C	T	1.919e^-4	0.897	INTRON lbe	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	17269164	3R_17269164_SNP [dm3] 3R_21443442_SNP [dm6]	C	T	1.919e^-4	0.897	INTRON lbe	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26469484	3R_26469484_SNP [dm3] 3R_30643762_SNP [dm6]	G	T	1.920e^-4	0.897	DOWNSTREAM CG31013 INTERGENIC
X	17576187	X_17576187_SNP [dm3] X_17682154_SNP [dm6]	A	C	1.935e^-4	0.897	INTRON chas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17977319	2R_17977319_SNP [dm3] 2R_22089814_SNP [dm6]	C	T	1.937e^-4	0.897	UTR_3_PRIME CG43393 DOWNSTREAM CG44163
3L	13067038	3L_13067038_SNP [dm3] 3L_13073938_SNP [dm6]	A	G	1.940e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	3190712	2L_3190712_SNP [dm3] 2L_3190712_SNP [dm6]	T	A	1.955e^-4	0.897	NON_SYNONYMOUS_CODING CG34393
3R	9897209	3R_9897209_SNP [dm3] 3R_14071487_SNP [dm6]	G	T	1.966e^-4	0.897	INTRON foxo
3R	9897230	3R_9897230_SNP [dm3] 3R_14071508_SNP [dm6]	A	C	1.966e^-4	0.897	INTRON foxo
3R	21712319	3R_21712319_SNP [dm3] 3R_25886597_SNP [dm6]	A	T	1.969e^-4	0.897	SYNONYMOUS_CODING SppL
2R	7823127	2R_7823127_INS [dm3] 2R_11935622_INS [dm6]	G	GCAACGA	1.975e^-4	0.897	INTERGENIC
X	21079428	X_21079428_DEL [dm3] X_21208401_DEL [dm6]	TCCTTC	AGA	1.981e^-4	0.897	UTR_3_PRIME CG32521 INTRON CG32521	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	18920954	3R_18920954_SNP [dm3] 3R_23095232_SNP [dm6]	G	A	1.997e^-4	0.897	UTR_3_PRIME CG17110 UPSTREAM CG17109 DOWNSTREAM CG17110 & 1 other INTRON CG13830
X	1195169	X_1195169_SNP [dm3] X_1301136_SNP [dm6]	C	T	1.998e^-4	0.897	INTRON DAAM
X	1195180	X_1195180_SNP [dm3] X_1301147_SNP [dm6]	C	G	1.998e^-4	0.897	INTRON DAAM
3R	23971925	3R_23971925_SNP [dm3] 3R_28146203_SNP [dm6]	G	T	2.000e^-4	0.897	UPSTREAM CG34354 INTERGENIC
3R	9306092	3R_9306092_SNP [dm3] 3R_13480370_SNP [dm6]	G	A	2.002e^-4	0.897	INTERGENIC
X	17078058	X_17078058_SNP [dm3] X_17184025_SNP [dm6]	G	T	2.006e^-4	0.897	UPSTREAM CR44026 INTRON baz
X	22395794	X_22395794_SNP [dm3] X_22993958_SNP [dm6]	G	A	2.006e^-4	0.897	NON_SYNONYMOUS_CODING stnA UTR_5_PRIME stnB
2L	16373794	2L_16373794_SNP [dm3] 2L_16373794_SNP [dm6]	A	G	2.010e^-4	0.897	INTERGENIC
2L	2536910	2L_2536910_SNP [dm3] 2L_2536910_SNP [dm6]	C	T	2.022e^-4	0.897	INTERGENIC
3L	6657870	3L_6657870_SNP [dm3] 3L_6664770_SNP [dm6]	G	A	2.027e^-4	0.897	INTRON eIF4E-4
2L	13001358	2L_13001358_SNP [dm3] 2L_13001358_SNP [dm6]	T	A	2.030e^-4	0.897	UTR_3_PRIME Vha68-1 UPSTREAM CG12404
3L	4647813	3L_4647813_SNP [dm3] 3L_4647813_SNP [dm6]	G	T	2.033e^-4	0.897	UPSTREAM CG32238 INTRON axo
2L	6606635	2L_6606635_SNP [dm3] 2L_6606635_SNP [dm6]	G	A	2.041e^-4	0.897	INTERGENIC
3L	16498184	3L_16498184_SNP [dm3] 3L_16505084_SNP [dm6]	C	T	2.058e^-4	0.897	SYNONYMOUS_CODING CG43373 UTR_3_PRIME CG43373
X	1818425	X_1818425_SNP [dm3] X_1924392_SNP [dm6]	T	A	2.058e^-4	0.897	INTRON Ocrl	TF binding site mE1_TFBS_sens
2L	9300694	2L_9300694_SNP [dm3] 2L_9300694_SNP [dm6]	A	G	2.061e^-4	0.897	UTR_3_PRIME Ggamma30A
2R	8521664	2R_8521664_SNP [dm3] 2R_12634159_SNP [dm6]	A	C	2.062e^-4	0.897	UTR_3_PRIME spt4 DOWNSTREAM CG33671 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	18793452	2L_18793452_SNP [dm3] 2L_18793452_SNP [dm6]	A	G	2.062e^-4	0.897	UPSTREAM ham INTERGENIC
3L	12818242	3L_12818242_SNP [dm3] 3L_12825142_SNP [dm6]	C	T	2.064e^-4	0.897	UTR_3_PRIME CG10960 DOWNSTREAM CG42588
3L	12818252	3L_12818252_SNP [dm3] 3L_12825152_SNP [dm6]	G	C	2.064e^-4	0.897	UTR_3_PRIME CG10960 DOWNSTREAM CG42588
3L	3771246	3L_3771246_SNP [dm3] 3L_3771246_SNP [dm6]	C	T	2.067e^-4	0.897	INTRON CG32264
3L	13352542	3L_13352542_SNP [dm3] 3L_13359442_SNP [dm6]	G	A	2.080e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13352629	3L_13352629_SNP [dm3] 3L_13359529_SNP [dm6]	C	T	2.080e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14211183	2R_14211183_SNP [dm3] 2R_18323678_SNP [dm6]	T	A	2.080e^-4	0.897	INTRON sbb	TF binding site BDTNP1_TFBS_twi
2L	4804840	2L_4804840_SNP [dm3] 2L_4804840_SNP [dm6]	T	C	2.081e^-4	0.897	INTERGENIC
3R	11674975	3R_11674975_SNP [dm3] 3R_15849253_SNP [dm6]	C	T	2.088e^-4	0.897	SYNONYMOUS_CODING cv-d DOWNSTREAM CG4546
3R	11674991	3R_11674991_SNP [dm3] 3R_15849269_SNP [dm6]	G	A	2.088e^-4	0.897	NON_SYNONYMOUS_CODING cv-d DOWNSTREAM CG4546
3R	7711955	3R_7711955_SNP [dm3] 3R_11886233_SNP [dm6]	A	G	2.092e^-4	0.897	INTRON CG31368 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3L	4269995	3L_4269995_SNP [dm3] 3L_4269995_SNP [dm6]	G	T	2.093e^-4	0.897	INTRON CG1273	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	12513049	3L_12513049_SNP [dm3] 3L_12519949_SNP [dm6]	C	A	2.097e^-4	0.897	UTR_3_PRIME tral DOWNSTREAM tral	TF binding site mE1_TFBS_inv
3L	4121659	3L_4121659_SNP [dm3] 3L_4121659_SNP [dm6]	T	A	2.111e^-4	0.897	INTRON Chd64
2L	6166807	2L_6166807_SNP [dm3] 2L_6166807_SNP [dm6]	G	A	2.140e^-4	0.897	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13306557	3L_13306557_SNP [dm3] 3L_13313457_SNP [dm6]	G	T	2.170e^-4	0.897	INTERGENIC
2L	9850078	2L_9850078_SNP [dm3] 2L_9850078_SNP [dm6]	C	A	2.175e^-4	0.897	INTRON nAChRalpha6
2L	16504230	2L_16504230_SNP [dm3] 2L_16504230_SNP [dm6]	C	A	2.189e^-4	0.897	INTRON Tpr2
3L	11136785	3L_11136785_SNP [dm3] 3L_11143685_SNP [dm6]	G	C	2.189e^-4	0.897	INTRON CG32082
3R	24552405	3R_24552405_SNP [dm3] 3R_28726683_SNP [dm6]	G	C	2.195e^-4	0.897	INTRON htt
3L	22103933	3L_22103933_INS [dm3] 3L_22110833_INS [dm6]	A	ATATATGCTTGAAT...	2.202e^-4	0.897	INTERGENIC
2R	3129216	2R_3129216_SNP [dm3] 2R_7241711_SNP [dm6]	T	C	2.203e^-4	0.897	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1107416	3L_1107416_SNP [dm3] 3L_1107416_SNP [dm6]	C	T	2.204e^-4	0.897	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9269478	2L_9269478_SNP [dm3] 2L_9269478_SNP [dm6]	A	G	2.217e^-4	0.897	INTRON Ggamma30A
3R	23974300	3R_23974300_SNP [dm3] 3R_28148578_SNP [dm6]	C	T	2.225e^-4	0.897	INTRON CG34354
3R	23974380	3R_23974380_SNP [dm3] 3R_28148658_SNP [dm6]	A	T	2.225e^-4	0.897	INTRON CG34354
2L	11008734	2L_11008734_SNP [dm3] 2L_11008734_SNP [dm6]	T	A	2.231e^-4	0.897	SYNONYMOUS_CODING Nup154
2L	11376609	2L_11376609_SNP [dm3] 2L_11376609_SNP [dm6]	T	A	2.233e^-4	0.897	INTERGENIC	regulatory region REDfly_CRMs
X	11199387	X_11199387_SNP [dm3] X_11305354_SNP [dm6]	C	T	2.242e^-4	0.897	INTERGENIC
3R	23870798	3R_23870798_SNP [dm3] 3R_28045076_SNP [dm6]	T	A	2.248e^-4	0.897	INTRON CG34362
3R	23972054	3R_23972054_SNP [dm3] 3R_28146332_SNP [dm6]	G	T	2.259e^-4	0.897	UPSTREAM CG34354 INTERGENIC
3R	23986409	3R_23986409_SNP [dm3] 3R_28160687_SNP [dm6]	G	T	2.276e^-4	0.897	INTRON CG34354
X	5580418	X_5580418_SNP [dm3] X_5686385_SNP [dm6]	A	G	2.282e^-4	0.897	SYNONYMOUS_CODING CG3160
3R	11214599	3R_11214599_SNP [dm3] 3R_15388877_SNP [dm6]	G	A	2.290e^-4	0.897	SYNONYMOUS_CODING Rbp UTR_3_PRIME Rbp	TF binding site mE1_TFBS_chinmo
2R	12374834	2R_12374834_SNP [dm3] 2R_16487329_SNP [dm6]	T	A	2.296e^-4	0.897	UPSTREAM CG33459 INTRON CG33458
3R	18921223	3R_18921223_INS [dm3] 3R_23095501_INS [dm6]	G	GG	2.300e^-4	0.897	UPSTREAM CG17109 DOWNSTREAM CG17110 & 1 other INTRON CG13830	TF binding site mE1_TFBS_inv
3R	18921238	3R_18921238_SNP [dm3] 3R_23095516_SNP [dm6]	T	C	2.300e^-4	0.897	UPSTREAM CG17109 DOWNSTREAM CG17110 & 1 other INTRON CG13830	TF binding site mE1_TFBS_inv
3L	16491673	3L_16491673_DEL [dm3] 3L_16498573_DEL [dm6]	AAGTTTATTGAAAGGCTAGA...	TATCTTGTG	2.305e^-4	0.897	INTRON CG43373 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3770615	3L_3770615_SNP [dm3] 3L_3770615_SNP [dm6]	T	A	2.308e^-4	0.897	INTRON CG32264
3L	3771002	3L_3771002_SNP [dm3] 3L_3771002_SNP [dm6]	T	A	2.308e^-4	0.897	INTRON CG32264
3L	3771214	3L_3771214_SNP [dm3] 3L_3771214_SNP [dm6]	T	G	2.308e^-4	0.897	INTRON CG32264
3L	3771724	3L_3771724_SNP [dm3] 3L_3771724_SNP [dm6]	C	T	2.308e^-4	0.897	INTRON CG32264
3L	3771726	3L_3771726_SNP [dm3] 3L_3771726_SNP [dm6]	A	T	2.308e^-4	0.897	INTRON CG32264
3R	18088140	3R_18088140_SNP [dm3] 3R_22262418_SNP [dm6]	C	T	2.308e^-4	0.897	INTRON SKIP
3R	18088167	3R_18088167_SNP [dm3] 3R_22262445_SNP [dm6]	T	C	2.308e^-4	0.897	INTRON SKIP
3R	18088174	3R_18088174_SNP [dm3] 3R_22262452_SNP [dm6]	T	A	2.308e^-4	0.897	INTRON SKIP
3R	18088205	3R_18088205_SNP [dm3] 3R_22262483_SNP [dm6]	C	G	2.308e^-4	0.897	INTRON SKIP
3R	18088213	3R_18088213_DEL [dm3] 3R_22262491_DEL [dm6]	TGCTAT	T	2.308e^-4	0.897	INTRON SKIP
2R	3128534	2R_3128534_SNP [dm3] 2R_7241029_SNP [dm6]	C	T	2.308e^-4	0.897	INTERGENIC
X	5715275	X_5715275_SNP [dm3] X_5821242_SNP [dm6]	A	G	2.314e^-4	0.897	INTRON CG15765	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	18747183	2R_18747183_SNP [dm3] 2R_22859660_SNP [dm6]	C	A	2.317e^-4	0.897	UPSTREAM inaD INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	17820747	3L_17820747_SNP [dm3] 3L_17827647_SNP [dm6]	A	G	2.320e^-4	0.897	INTRON Grd
3L	17822835	3L_17822835_SNP [dm3] 3L_17829735_SNP [dm6]	T	A	2.320e^-4	0.897	INTRON Grd
2R	6141559	2R_6141559_SNP [dm3] 2R_10254054_SNP [dm6]	A	G	2.327e^-4	0.897	INTRON CG12913	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	6141574	2R_6141574_SNP [dm3] 2R_10254069_SNP [dm6]	A	T	2.327e^-4	0.897	INTRON CG12913	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	6141585	2R_6141585_SNP [dm3] 2R_10254080_SNP [dm6]	G	A	2.327e^-4	0.897	INTRON CG12913	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	6141595	2R_6141595_SNP [dm3] 2R_10254090_SNP [dm6]	A	T	2.327e^-4	0.897	INTRON CG12913	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	16795898	2R_16795898_SNP [dm3] 2R_20908393_SNP [dm6]	G	C	2.331e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	18747072	2R_18747072_INS [dm3] 2R_22859549_INS [dm6]	T	TAGCTAATT	2.335e^-4	0.897	UPSTREAM inaD INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	18087924	3R_18087924_SNP [dm3] 3R_22262202_SNP [dm6]	A	C	2.351e^-4	0.897	INTRON SKIP
2R	6801719	2R_6801719_SNP [dm3] 2R_10914214_SNP [dm6]	A	C	2.351e^-4	0.897	INTERGENIC
2L	2536911	2L_2536911_SNP [dm3] 2L_2536911_SNP [dm6]	A	G	2.353e^-4	0.897	INTERGENIC
2R	4440063	2R_4440063_SNP [dm3] 2R_8552558_SNP [dm6]	A	C	2.367e^-4	0.897	UPSTREAM CG12780 INTERGENIC
3R	23643021	3R_23643021_SNP [dm3] 3R_27817299_SNP [dm6]	G	T	2.388e^-4	0.897	INTRON CG34353	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5337807	2L_5337807_SNP [dm3] 2L_5337807_SNP [dm6]	A	G	2.395e^-4	0.897	UTR_5_PRIME fusl INTRON fusl
3R	12833873	3R_12833873_SNP [dm3] 3R_17008151_SNP [dm6]	G	C	2.396e^-4	0.897	UPSTREAM CG8907 DOWNSTREAM Irc INTERGENIC
2L	9858497	2L_9858497_SNP [dm3] 2L_9858497_SNP [dm6]	G	A	2.397e^-4	0.897	INTRON nAChRalpha6
2R	18754043	2R_18754043_SNP [dm3] 2R_22866520_SNP [dm6]	A	G	2.398e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21700579	3R_21700579_SNP [dm3] 3R_25874857_SNP [dm6]	G	A	2.401e^-4	0.897	UTR_3_PRIME Tsp96F
3R	4747900	3R_4747900_SNP [dm3] 3R_8922178_SNP [dm6]	T	G	2.401e^-4	0.897	INTRON pyd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18729455	X_18729455_SNP [dm3] X_18835422_SNP [dm6]	T	C	2.406e^-4	0.897	INTRON Pvf1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	17078054	X_17078054_SNP [dm3] X_17184021_SNP [dm6]	C	T	2.408e^-4	0.897	UPSTREAM CR44026 INTRON baz
X	17077938	X_17077938_SNP [dm3] X_17183905_SNP [dm6]	T	C	2.416e^-4	0.897	UPSTREAM CR44026 INTRON baz
X	15569948	X_15569948_SNP [dm3] X_15675915_SNP [dm6]	C	G	2.417e^-4	0.897	INTRON CG12708	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	23984439	3R_23984439_SNP [dm3] 3R_28158717_SNP [dm6]	A	C	2.418e^-4	0.897	INTRON CG34354
3R	6281679	3R_6281679_SNP [dm3] 3R_10455957_SNP [dm6]	T	C	2.420e^-4	0.897	INTERGENIC
3L	3771836	3L_3771836_SNP [dm3] 3L_3771836_SNP [dm6]	G	C	2.427e^-4	0.897	INTRON CG32264
2L	12368382	2L_12368382_DEL [dm3] 2L_12368382_DEL [dm6]	AG	A	2.429e^-4	0.897	INTRON bru-2
2R	17568598	2R_17568598_SNP [dm3] 2R_21681093_SNP [dm6]	A	G	2.429e^-4	0.897	SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_chinmo
3L	21728080	3L_21728080_DEL [dm3] 3L_21734980_DEL [dm6]	AA	A	2.440e^-4	0.897	UPSTREAM CR43888 DOWNSTREAM CG14573 INTERGENIC
2L	6274969	2L_6274969_SNP [dm3] 2L_6274969_SNP [dm6]	T	A	2.441e^-4	0.897	INTRON Ddr
3R	6002323	3R_6002323_SNP [dm3] 3R_10176601_SNP [dm6]	G	A	2.444e^-4	0.897	INTRON CG12814
2R	19076108	2R_19076108_SNP [dm3] 2R_23188585_SNP [dm6]	T	C	2.445e^-4	0.897	INTRON CG34371	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1197760	X_1197760_SNP [dm3] X_1303727_SNP [dm6]	A	C	2.452e^-4	0.897	INTRON DAAM
3L	1692938	3L_1692938_SNP [dm3] 3L_1692938_SNP [dm6]	A	T	2.460e^-4	0.897	INTRON CG7991	TF binding site mE1_TFBS_cad
3L	2963783	3L_2963783_SNP [dm3] 3L_2963783_SNP [dm6]	T	A	2.462e^-4	0.897	UTR_3_PRIME Or63a
3R	10595959	3R_10595959_SNP [dm3] 3R_14770237_SNP [dm6]	G	C	2.465e^-4	0.897	INTRON jvl
3L	11256028	3L_11256028_SNP [dm3] 3L_11262928_SNP [dm6]	A	G	2.482e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	6323349	X_6323349_INS [dm3] X_6429316_INS [dm6]	C	CGAAT	2.485e^-4	0.897	INTRON CG42340
X	18041777	X_18041777_SNP [dm3] X_18147744_SNP [dm6]	T	A	2.489e^-4	0.897	INTERGENIC
3R	23882057	3R_23882057_SNP [dm3] 3R_28056335_SNP [dm6]	T	G	2.495e^-4	0.897	INTRON CG34362
X	19856483	X_19856483_DEL [dm3] X_19962450_DEL [dm6]	TTT	T	2.505e^-4	0.897	UPSTREAM Nep3 INTRON Nep3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	19856488	X_19856488_SNP [dm3] X_19962455_SNP [dm6]	T	C	2.505e^-4	0.897	UPSTREAM Nep3 INTRON Nep3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	11674993	3R_11674993_SNP [dm3] 3R_15849271_SNP [dm6]	G	A	2.515e^-4	0.897	SYNONYMOUS_CODING cv-d DOWNSTREAM CG4546
2L	14549555	2L_14549555_SNP [dm3] 2L_14549555_SNP [dm6]	C	T	2.517e^-4	0.897	UPSTREAM CG4218 DOWNSTREAM CR44853 INTERGENIC	TF binding site mE1_TFBS_cad
3L	18597095	3L_18597095_SNP [dm3] 3L_18603995_SNP [dm6]	C	T	2.520e^-4	0.897	INTRON CG4174 & 2 others
3L	18597098	3L_18597098_SNP [dm3] 3L_18603998_SNP [dm6]	G	C	2.520e^-4	0.897	INTRON CG4174 & 2 others
X	21079585	X_21079585_SNP [dm3] X_21208558_SNP [dm6]	C	T	2.520e^-4	0.897	UTR_3_PRIME CG32521 INTRON CG32521
X	18729480	X_18729480_SNP [dm3] X_18835447_SNP [dm6]	C	T	2.530e^-4	0.897	INTRON Pvf1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	4429152	2L_4429152_SNP [dm3] 2L_4429152_SNP [dm6]	A	G	2.543e^-4	0.897	INTRON CG15431
X	4105675	X_4105675_INS [dm3] X_4211642_INS [dm6]	T	TTCATCGAAAAATTAATTTG...	2.555e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4298719	X_4298719_SNP [dm3] X_4404686_SNP [dm6]	T	A	2.560e^-4	0.897	INTRON CR32773
X	4298725	X_4298725_SNP [dm3] X_4404692_SNP [dm6]	C	T	2.560e^-4	0.897	INTRON CR32773
X	4298729	X_4298729_INS [dm3] X_4404696_INS [dm6]	T	TT	2.560e^-4	0.897	INTRON CR32773
X	4298753	X_4298753_SNP [dm3] X_4404720_SNP [dm6]	A	G	2.560e^-4	0.897	INTRON CR32773
3R	14071756	3R_14071756_SNP [dm3] 3R_18246034_SNP [dm6]	A	G	2.561e^-4	0.897	INTRON 14-3-3epsilon	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14071775	3R_14071775_SNP [dm3] 3R_18246053_SNP [dm6]	A	C	2.561e^-4	0.897	INTRON 14-3-3epsilon	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10123576	3L_10123576_SNP [dm3] 3L_10130476_SNP [dm6]	G	T	2.575e^-4	0.897	INTRON dpr6
2R	13476170	2R_13476170_SNP [dm3] 2R_17588665_SNP [dm6]	A	T	2.577e^-4	0.897	SYNONYMOUS_CODING RhoGAP54D	TF binding site mE1_TFBS_HSA
3R	7708845	3R_7708845_SNP [dm3] 3R_11883123_SNP [dm6]	T	A	2.581e^-4	0.897	SYNONYMOUS_CODING CG31368 UPSTREAM CG6962 DOWNSTREAM mthl5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	7157431	2R_7157431_SNP [dm3] 2R_11269926_SNP [dm6]	G	A	2.585e^-4	0.897	SYNONYMOUS_CODING Cpr47Ef	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13182961	2L_13182961_SNP [dm3] 2L_13182961_SNP [dm6]	T	A	2.586e^-4	0.897	SYNONYMOUS_CODING CG5287 UPSTREAM CG5458 & 1 other DOWNSTREAM CG16974	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9119168	2L_9119168_SNP [dm3] 2L_9119168_SNP [dm6]	T	C	2.593e^-4	0.897	UPSTREAM CR44617 INTERGENIC
3R	23966903	3R_23966903_SNP [dm3] 3R_28141181_SNP [dm6]	G	A	2.599e^-4	0.897	INTERGENIC
3L	6789418	3L_6789418_SNP [dm3] 3L_6796318_SNP [dm6]	T	A	2.602e^-4	0.897	INTERGENIC
2L	1252803	2L_1252803_SNP [dm3] 2L_1252803_SNP [dm6]	A	C	2.604e^-4	0.897	INTERGENIC
3L	11326397	3L_11326397_SNP [dm3] 3L_11333297_SNP [dm6]	A	G	2.612e^-4	0.897	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	18869920	X_18869920_SNP [dm3] X_18975887_SNP [dm6]	C	T	2.612e^-4	0.897	INTRON CG43759	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
X	12427128	X_12427128_SNP [dm3] X_12533095_SNP [dm6]	T	C	2.629e^-4	0.897	INTRON CG43921
2L	7906908	2L_7906908_SNP [dm3] 2L_7906908_SNP [dm6]	G	A	2.639e^-4	0.897	INTRON Snoo
3L	4277789	3L_4277789_SNP [dm3] 3L_4277789_SNP [dm6]	G	A	2.646e^-4	0.897	UPSTREAM CG1311 DOWNSTREAM CG1273 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	4277814	3L_4277814_SNP [dm3] 3L_4277814_SNP [dm6]	T	G	2.646e^-4	0.897	UPSTREAM CG1311 DOWNSTREAM CG1273 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	18747317	2R_18747317_SNP [dm3] 2R_22859794_SNP [dm6]	G	A	2.647e^-4	0.897	UPSTREAM inaD INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	26469552	3R_26469552_SNP [dm3] 3R_30643830_SNP [dm6]	C	T	2.648e^-4	0.897	UTR_3_PRIME CG31013
3L	4154249	3L_4154249_SNP [dm3] 3L_4154249_SNP [dm6]	A	G	2.648e^-4	0.897	SPLICE_SITE_REGION nab INTRON nab
3L	4154254	3L_4154254_SNP [dm3] 3L_4154254_SNP [dm6]	T	G	2.648e^-4	0.897	INTRON nab
3L	4154266	3L_4154266_SNP [dm3] 3L_4154266_SNP [dm6]	T	C	2.648e^-4	0.897	INTRON nab
3L	4154269	3L_4154269_SNP [dm3] 3L_4154269_SNP [dm6]	A	C	2.648e^-4	0.897	INTRON nab
3R	11753852	3R_11753852_SNP [dm3] 3R_15928130_SNP [dm6]	C	T	2.649e^-4	0.897	DOWNSTREAM CG34276 INTRON CG4221
X	5463479	X_5463479_SNP [dm3] X_5569446_SNP [dm6]	T	A	2.661e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	11616963	2L_11616963_SNP [dm3] 2L_11616963_SNP [dm6]	G	A	2.663e^-4	0.897	INTRON kek2
3L	13370452	3L_13370452_SNP [dm3] 3L_13377352_SNP [dm6]	C	T	2.664e^-4	0.897	UPSTREAM CG14111 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	11753617	3R_11753617_SNP [dm3] 3R_15927895_SNP [dm6]	C	T	2.676e^-4	0.897	DOWNSTREAM CG34276 INTRON CG4221
2L	9860787	2L_9860787_SNP [dm3] 2L_9860787_SNP [dm6]	A	C	2.691e^-4	0.897	INTRON nAChRalpha6
3R	13969536	3R_13969536_SNP [dm3] 3R_18143814_SNP [dm6]	G	A	2.691e^-4	0.897	INTERGENIC	TF binding site mE1_TFBS_inv
X	1194911	X_1194911_INS [dm3] X_1300878_INS [dm6]	G	GAG	2.697e^-4	0.897	INTRON DAAM
3R	24187713	3R_24187713_SNP [dm3] 3R_28361991_SNP [dm6]	A	G	2.706e^-4	0.897	INTERGENIC
3R	23972798	3R_23972798_SNP [dm3] 3R_28147076_SNP [dm6]	T	C	2.707e^-4	0.897	INTRON CG34354
3L	11474331	3L_11474331_SNP [dm3] 3L_11481231_SNP [dm6]	C	A	2.728e^-4	0.897	INTERGENIC
3R	13773395	3R_13773395_INS [dm3] 3R_17947673_INS [dm6]	A	AA	2.728e^-4	0.897	INTRON cpo
3L	3039311	3L_3039311_SNP [dm3] 3L_3039311_SNP [dm6]	C	T	2.742e^-4	0.897	INTRON CG2162	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	20499678	X_20499678_SNP [dm3] X_20628651_SNP [dm6]	G	T	2.746e^-4	0.897	INTERGENIC
2L	1493661	2L_1493661_SNP [dm3] 2L_1493661_SNP [dm6]	G	A	2.755e^-4	0.897	UTR_3_PRIME CG31928 UPSTREAM CG33128 DOWNSTREAM CG31928
2R	8941451	2R_8941451_SNP [dm3] 2R_13053946_SNP [dm6]	C	T	2.759e^-4	0.897	INTERGENIC
2R	2484434	2R_2484434_SNP [dm3] 2R_6596929_SNP [dm6]	G	A	2.762e^-4	0.897	INTRON jing	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	6964215	3L_6964215_SNP [dm3] 3L_6971115_SNP [dm6]	T	G	2.767e^-4	0.897	SYNONYMOUS_CODING CG9953 DOWNSTREAM CG10063	TF binding site mE1_TFBS_sens
2L	1021764	2L_1021764_SNP [dm3] 2L_1021764_SNP [dm6]	G	A	2.774e^-4	0.897	INTRON IA-2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6122657	2R_6122657_INS [dm3] 2R_10235152_INS [dm6]	A	AACA	2.774e^-4	0.897	UPSTREAM CG12912 & 1 other INTRON Hr46
X	14470777	X_14470777_SNP [dm3] X_14576744_SNP [dm6]	G	A	2.776e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17576084	X_17576084_SNP [dm3] X_17682051_SNP [dm6]	T	G	2.780e^-4	0.897	INTRON chas	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8853958	X_8853958_SNP [dm3] X_8959925_SNP [dm6]	T	C	2.782e^-4	0.897	INTRON rdgA
2R	4813092	2R_4813092_SNP [dm3] 2R_8925587_SNP [dm6]	G	A	2.785e^-4	0.897	UPSTREAM CG8237 DOWNSTREAM CG8243 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	7731474	3R_7731474_SNP [dm3] 3R_11905752_SNP [dm6]	A	G	2.787e^-4	0.897	INTRON Cad87A
2L	9128690	2L_9128690_SNP [dm3] 2L_9128690_SNP [dm6]	T	C	2.799e^-4	0.897	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12867450	2R_12867450_INS [dm3] 2R_16979945_INS [dm6]	G	GCAAG	2.818e^-4	0.897	INTRON Cbp53E
2R	12867452	2R_12867452_SNP [dm3] 2R_16979947_SNP [dm6]	C	G	2.818e^-4	0.897	INTRON Cbp53E
2R	12709670	2R_12709670_SNP [dm3] 2R_16822165_SNP [dm6]	T	A	2.820e^-4	0.897	INTERGENIC
X	1196886	X_1196886_SNP [dm3] X_1302853_SNP [dm6]	T	C	2.824e^-4	0.897	INTRON DAAM	TF binding site mE1_TFBS_chinmo
3L	13352592	3L_13352592_SNP [dm3] 3L_13359492_SNP [dm6]	A	T	2.826e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6826029	2L_6826029_DEL [dm3] 2L_6826029_DEL [dm6]	GGT	G	2.827e^-4	0.897	INTRON sens-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	19751155	2R_19751155_SNP [dm3] 2R_23863632_SNP [dm6]	C	T	2.830e^-4	0.897	SYNONYMOUS_CODING CG4585	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	18041074	X_18041074_SNP [dm3] X_18147041_SNP [dm6]	T	C	2.831e^-4	0.897	INTERGENIC	transposable element FlyBase
3L	1343349	3L_1343349_SNP [dm3] 3L_1343349_SNP [dm6]	A	T	2.834e^-4	0.897	UTR_3_PRIME Ptp61F UPSTREAM CG2199 DOWNSTREAM Ptp61F INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	1613429	3L_1613429_SNP [dm3] 3L_1613429_SNP [dm6]	A	T	2.838e^-4	0.897	NON_SYNONYMOUS_CODING CG12105 INTRON CG33791 & 1 other	TF binding site mE1_TFBS_cad
2L	6168082	2L_6168082_INS [dm3] 2L_6168082_INS [dm6]	G	GGAG	2.842e^-4	0.897	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8811038	X_8811038_SNP [dm3] X_8917005_SNP [dm6]	G	T	2.851e^-4	0.897	INTRON rdgA
2R	14330940	2R_14330940_SNP [dm3] 2R_18443435_SNP [dm6]	A	T	2.854e^-4	0.897	INTRON slim	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	3767201	3L_3767201_SNP [dm3] 3L_3767201_SNP [dm6]	C	T	2.859e^-4	0.897	SYNONYMOUS_CODING CG32264	TF binding site mE1_TFBS_bab1
3R	22638539	3R_22638539_SNP [dm3] 3R_26812817_SNP [dm6]	G	A	2.872e^-4	0.897	INTRON Tl
3L	4154337	3L_4154337_SNP [dm3] 3L_4154337_SNP [dm6]	G	A	2.877e^-4	0.897	INTRON nab
3R	17024159	3R_17024159_SNP [dm3] 3R_21198437_SNP [dm6]	T	A	2.894e^-4	0.897	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	22970400	3L_22970400_SNP [dm3] 3L_22977300_SNP [dm6]	C	G	2.898e^-4	0.897	INTERGENIC	transposable element FlyBase
3L	9232438	3L_9232438_SNP [dm3] 3L_9239338_SNP [dm6]	G	C	2.904e^-4	0.897	INTERGENIC
2L	13933074	2L_13933074_SNP [dm3] 2L_13933074_SNP [dm6]	A	G	2.905e^-4	0.897	SYNONYMOUS_CODING CG16885 INTRON Ance-3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16817978	X_16817978_SNP [dm3] X_16923945_SNP [dm6]	A	C	2.908e^-4	0.897	INTRON CG4928
3L	10123466	3L_10123466_SNP [dm3] 3L_10130366_SNP [dm6]	T	C	2.909e^-4	0.897	INTRON dpr6
X	14470778	X_14470778_SNP [dm3] X_14576745_SNP [dm6]	C	A	2.910e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7717543	3R_7717543_SNP [dm3] 3R_11891821_SNP [dm6]	T	A	2.913e^-4	0.897	DOWNSTREAM CG6971 INTRON CG31368
3L	4278583	3L_4278583_SNP [dm3] 3L_4278583_SNP [dm6]	C	T	2.914e^-4	0.897	DOWNSTREAM CG1273 INTRON CG1311	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6145010	2R_6145010_SNP [dm3] 2R_10257505_SNP [dm6]	A	C	2.914e^-4	0.897	INTRON CG12911
3R	18085901	3R_18085901_SNP [dm3] 3R_22260179_SNP [dm6]	T	C	2.915e^-4	0.897	INTRON SKIP
2R	18351860	2R_18351860_SNP [dm3] 2R_22464355_SNP [dm6]	C	T	2.932e^-4	0.897	INTRON CG10384	TF binding site BDTNP1_TFBS_dl
X	8226700	X_8226700_SNP [dm3] X_8332667_SNP [dm6]	G	A	2.943e^-4	0.897	INTRON nAChRalpha3
X	8226715	X_8226715_SNP [dm3] X_8332682_SNP [dm6]	T	C	2.943e^-4	0.897	INTRON nAChRalpha3
X	8226724	X_8226724_SNP [dm3] X_8332691_SNP [dm6]	T	C	2.943e^-4	0.897	INTRON nAChRalpha3
X	8226730	X_8226730_SNP [dm3] X_8332697_SNP [dm6]	A	G	2.943e^-4	0.897	INTRON nAChRalpha3
3R	17556014	3R_17556014_SNP [dm3] 3R_21730292_SNP [dm6]	A	T	2.945e^-4	0.897	UPSTREAM CR43096 INTERGENIC
3L	21700844	3L_21700844_SNP [dm3] 3L_21707744_SNP [dm6]	C	G	2.950e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	3082785	2R_3082785_SNP [dm3] 2R_7195280_SNP [dm6]	G	A	2.951e^-4	0.897	INTRON pk
3L	7388002	3L_7388002_SNP [dm3] 3L_7394902_SNP [dm6]	T	C	2.962e^-4	0.897	INTRON CG8563
2L	17242299	2L_17242299_SNP [dm3] 2L_17242299_SNP [dm6]	T	A	2.966e^-4	0.897	INTRON beat-IIIc
2R	13475152	2R_13475152_SNP [dm3] 2R_17587647_SNP [dm6]	C	T	2.977e^-4	0.897	SYNONYMOUS_CODING RhoGAP54D
2R	16907695	2R_16907695_SNP [dm3] 2R_21020190_SNP [dm6]	A	G	2.978e^-4	0.897	SYNONYMOUS_CODING RIC-3
2R	8588374	2R_8588374_DEL [dm3] 2R_12700869_DEL [dm6]	ATTCCGTTTCCCCGTCCAGT...	A	2.984e^-4	0.897	DOWNSTREAM wuc INTERGENIC
3L	11474300	3L_11474300_DEL [dm3] 3L_11481200_DEL [dm6]	TTCGATATCCAAAAACTCCT...	A	3.006e^-4	0.897	INTERGENIC
X	8226851	X_8226851_DEL [dm3] X_8332818_DEL [dm6]	CG	T	3.014e^-4	0.897	INTRON nAChRalpha3
2L	6165941	2L_6165941_SNP [dm3] 2L_6165941_SNP [dm6]	T	C	3.016e^-4	0.897	INTERGENIC
3L	6792579	3L_6792579_SNP [dm3] 3L_6799479_SNP [dm6]	A	T	3.019e^-4	0.897	INTERGENIC	enhancer mE1_CBP_Enhancers
X	18330144	X_18330144_SNP [dm3] X_18436111_SNP [dm6]	C	T	3.054e^-4	0.897	NON_SYNONYMOUS_CODING CG32548	TF binding site mE1_TFBS_chinmo
2L	4335621	2L_4335621_SNP [dm3] 2L_4335621_SNP [dm6]	A	T	3.058e^-4	0.897	INTRON Atet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	6593551	3L_6593551_SNP [dm3] 3L_6600451_SNP [dm6]	G	T	3.062e^-4	0.897	SYNONYMOUS_CODING ndl
X	6713987	X_6713987_SNP [dm3] X_6819954_SNP [dm6]	A	G	3.064e^-4	0.897	SYNONYMOUS_CODING Nf-YC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	18597109	3L_18597109_SNP [dm3] 3L_18604009_SNP [dm6]	G	C	3.066e^-4	0.897	INTRON CG4174 & 2 others
X	2168430	X_2168430_SNP [dm3] X_2274397_SNP [dm6]	T	A	3.075e^-4	0.897	INTRON CG2918	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
3L	7597737	3L_7597737_SNP [dm3] 3L_7604637_SNP [dm6]	C	T	3.080e^-4	0.897	UPSTREAM CG33275 INTRON CG33275
3L	7597845	3L_7597845_SNP [dm3] 3L_7604745_SNP [dm6]	T	G	3.080e^-4	0.897	UPSTREAM CG33275 INTRON CG33275
3L	7597849	3L_7597849_SNP [dm3] 3L_7604749_SNP [dm6]	C	A	3.080e^-4	0.897	UPSTREAM CG33275 INTRON CG33275
3R	23971028	3R_23971028_DEL [dm3] 3R_28145306_DEL [dm6]	CTTTGG	C	3.081e^-4	0.897	INTERGENIC
3R	10832748	3R_10832748_SNP [dm3] 3R_15007026_SNP [dm6]	A	C	3.089e^-4	0.897	INTERGENIC
2R	15054143	2R_15054143_INS [dm3] 2R_19166638_INS [dm6]	CT	TAATATATAA	3.097e^-4	0.897	INTRON CG10737	TF binding site mE1_TFBS_Trl
3L	21697312	3L_21697312_SNP [dm3] 3L_21704212_SNP [dm6]	G	A	3.105e^-4	0.897	INTRON CG32447
3R	24300826	3R_24300826_SNP [dm3] 3R_28475104_SNP [dm6]	G	T	3.108e^-4	0.897	DOWNSTREAM beat-VI INTERGENIC	TF binding site mE1_TFBS_cad
3L	11567588	3L_11567588_SNP [dm3] 3L_11574488_SNP [dm6]	C	T	3.119e^-4	0.897	SYNONYMOUS_CODING CG33490 DOWNSTREAM CG33489
2R	8670213	2R_8670213_SNP [dm3] 2R_12782708_SNP [dm6]	C	T	3.125e^-4	0.897	DOWNSTREAM CR45137 INTRON sca
X	18418709	X_18418709_SNP [dm3] X_18524676_SNP [dm6]	A	G	3.130e^-4	0.897	INTRON Bx
2R	6139669	2R_6139669_SNP [dm3] 2R_10252164_SNP [dm6]	A	T	3.132e^-4	0.897	UTR_5_PRIME Syb INTRON CG12913 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2R	20681286	2R_20681286_INS [dm3] 2R_24793763_INS [dm6]	C	CC	3.134e^-4	0.897	UPSTREAM CR43257 & 1 other DOWNSTREAM ETH INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	2348398	3L_2348398_INS [dm3] 3L_2348398_INS [dm6]	A	ACAAA	3.141e^-4	0.897	INTERGENIC
3L	2348407	3L_2348407_DEL [dm3] 3L_2348407_DEL [dm6]	TGT	A	3.141e^-4	0.897	INTERGENIC
2R	2431044	2R_2431044_INS [dm3] 2R_6543539_INS [dm6]	T	TTTGCATT	3.145e^-4	0.897	INTRON jing
3L	4154252	3L_4154252_SNP [dm3] 3L_4154252_SNP [dm6]	A	G	3.147e^-4	0.897	SPLICE_SITE_REGION nab INTRON nab
2R	13475204	2R_13475204_SNP [dm3] 2R_17587699_SNP [dm6]	C	G	3.148e^-4	0.897	NON_SYNONYMOUS_CODING RhoGAP54D
2R	13477908	2R_13477908_SNP [dm3] 2R_17590403_SNP [dm6]	T	C	3.148e^-4	0.897	START_GAINED RhoGAP54D UTR_5_PRIME RhoGAP54D UPSTREAM icln	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3L	12639299	3L_12639299_SNP [dm3] 3L_12646199_SNP [dm6]	A	T	3.157e^-4	0.897	DOWNSTREAM CR32111 EXON CR32111
3L	1266588	3L_1266588_SNP [dm3] 3L_1266588_SNP [dm6]	T	C	3.174e^-4	0.897	INTRON CG9134
X	4300637	X_4300637_SNP [dm3] X_4406604_SNP [dm6]	G	A	3.175e^-4	0.897	INTRON CR32773	TF binding site mE1_TFBS_chinmo
3L	1539744	3L_1539744_SNP [dm3] 3L_1539744_SNP [dm6]	G	A	3.176e^-4	0.897	SYNONYMOUS_CODING CG7852	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	10505725	X_10505725_SNP [dm3] X_10611692_SNP [dm6]	A	G	3.177e^-4	0.897	SYNONYMOUS_CODING CG43347	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_chinmo
3L	17130839	3L_17130839_SNP [dm3] 3L_17137739_SNP [dm6]	T	C	3.180e^-4	0.897	INTRON Rbp6
2L	9599273	2L_9599273_SNP [dm3] 2L_9599273_SNP [dm6]	G	T	3.188e^-4	0.897	SYNONYMOUS_CODING CG4382	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9329536	3L_9329536_SNP [dm3] 3L_9336436_SNP [dm6]	T	G	3.192e^-4	0.897	INTRON PGRP-LA
2L	18693896	2L_18693896_SNP [dm3] 2L_18693896_SNP [dm6]	T	C	3.195e^-4	0.897	INTRON CG10383
3L	8534627	3L_8534627_SNP [dm3] 3L_8541527_SNP [dm6]	A	G	3.195e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	9827497	3R_9827497_DEL [dm3] 3R_14001775_DEL [dm6]	TTAGTATTAA	T	3.200e^-4	0.897	INTRON rdx	TF binding site mE1_TFBS_cad
2R	18747287	2R_18747287_SNP [dm3] 2R_22859764_SNP [dm6]	G	T	3.209e^-4	0.897	UPSTREAM inaD INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	13352537	3L_13352537_SNP [dm3] 3L_13359437_SNP [dm6]	A	G	3.211e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13352546	3L_13352546_SNP [dm3] 3L_13359446_SNP [dm6]	T	A	3.211e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13352552	3L_13352552_SNP [dm3] 3L_13359452_SNP [dm6]	T	C	3.211e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1197871	X_1197871_SNP [dm3] X_1303838_SNP [dm6]	A	T	3.211e^-4	0.897	INTRON DAAM
3R	10032526	3R_10032526_SNP [dm3] 3R_14206804_SNP [dm6]	A	G	3.218e^-4	0.897	INTRON Dop1R1
3L	18727418	3L_18727418_SNP [dm3] 3L_18734318_SNP [dm6]	G	A	3.220e^-4	0.897	INTERGENIC
3R	11753619	3R_11753619_INS [dm3] 3R_15927897_INS [dm6]	A	ATACTCATTTAGTTT...	3.245e^-4	0.897	DOWNSTREAM CG34276 INTRON CG4221
3R	23972073	3R_23972073_SNP [dm3] 3R_28146351_SNP [dm6]	A	T	3.251e^-4	0.897	UPSTREAM CG34354 INTERGENIC
3R	9837457	3R_9837457_SNP [dm3] 3R_14011735_SNP [dm6]	A	T	3.251e^-4	0.897	INTRON rdx	TF binding site BDTNP1_TFBS_dl
3R	9837460	3R_9837460_SNP [dm3] 3R_14011738_SNP [dm6]	C	T	3.251e^-4	0.897	INTRON rdx	TF binding site BDTNP1_TFBS_dl
3R	9837469	3R_9837469_SNP [dm3] 3R_14011747_SNP [dm6]	G	A	3.251e^-4	0.897	INTRON rdx	TF binding site BDTNP1_TFBS_dl
3R	9837471	3R_9837471_SNP [dm3] 3R_14011749_SNP [dm6]	A	T	3.251e^-4	0.897	INTRON rdx	TF binding site BDTNP1_TFBS_dl
2R	14103294	2R_14103294_SNP [dm3] 2R_18215789_SNP [dm6]	A	T	3.253e^-4	0.897	INTERGENIC
3R	17462635	3R_17462635_SNP [dm3] 3R_21636913_SNP [dm6]	T	G	3.256e^-4	0.897	INTRON E2f	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	17975526	2R_17975526_SNP [dm3] 2R_22088021_SNP [dm6]	C	A	3.260e^-4	0.897	UPSTREAM CG13502 INTRON CG13502
2L	11941360	2L_11941360_INS [dm3] 2L_11941360_INS [dm6]	C	CGGC	3.262e^-4	0.897	INTERGENIC
2L	19175793	2L_19175793_SNP [dm3] 2L_19175793_SNP [dm6]	A	C	3.263e^-4	0.897	UTR_3_PRIME brat INTRON brat
2L	19175813	2L_19175813_SNP [dm3] 2L_19175813_SNP [dm6]	A	G	3.263e^-4	0.897	UTR_3_PRIME brat INTRON brat
2L	1315108	2L_1315108_SNP [dm3] 2L_1315108_SNP [dm6]	T	A	3.278e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	9270007	2L_9270007_SNP [dm3] 2L_9270007_SNP [dm6]	A	G	3.283e^-4	0.897	INTRON Ggamma30A
2R	6966068	2R_6966068_SNP [dm3] 2R_11078563_SNP [dm6]	A	T	3.285e^-4	0.897	INTRON luna
2R	17568836	2R_17568836_SNP [dm3] 2R_21681331_SNP [dm6]	A	C	3.289e^-4	0.897	INTRON CG30263
2R	17568891	2R_17568891_SNP [dm3] 2R_21681386_SNP [dm6]	C	T	3.289e^-4	0.897	INTRON CG30263
2R	17568920	2R_17568920_SNP [dm3] 2R_21681415_SNP [dm6]	G	A	3.289e^-4	0.897	INTRON CG30263
3L	15061185	3L_15061185_SNP [dm3] 3L_15068085_SNP [dm6]	G	A	3.289e^-4	0.897	SYNONYMOUS_CODING cp309	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	6641061	3R_6641061_SNP [dm3] 3R_10815339_SNP [dm6]	C	T	3.317e^-4	0.897	START_GAINED CG4089 UTR_5_PRIME CG4089 UPSTREAM CG14693	insulator Insulator_Class_I.mE01
3R	19073426	3R_19073426_INS [dm3] 3R_23247704_INS [dm6]	T	TATGTGCGT	3.334e^-4	0.897	INTRON CG4467
2R	19639426	2R_19639426_SNP [dm3] 2R_23751903_SNP [dm6]	A	G	3.334e^-4	0.897	UPSTREAM CG11300 & 1 other DOWNSTREAM CG12491 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
X	14464054	X_14464054_SNP [dm3] X_14570021_SNP [dm6]	T	C	3.334e^-4	0.897	INTERGENIC
3L	2346951	3L_2346951_SNP [dm3] 3L_2346951_SNP [dm6]	A	T	3.340e^-4	0.897	INTERGENIC
3R	9990842	3R_9990842_SNP [dm3] 3R_14165120_SNP [dm6]	T	C	3.341e^-4	0.897	DOWNSTREAM Dop1R1 INTERGENIC
3R	10114590	3R_10114590_SNP [dm3] 3R_14288868_SNP [dm6]	T	G	3.341e^-4	0.897	UPSTREAM CG12207 DOWNSTREAM CR45596 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	7151203	2R_7151203_SNP [dm3] 2R_11263698_SNP [dm6]	G	T	3.347e^-4	0.897	INTERGENIC	TF binding site mE1_TFBS_ttk
3R	11674927	3R_11674927_SNP [dm3] 3R_15849205_SNP [dm6]	A	G	3.349e^-4	0.897	SYNONYMOUS_CODING cv-d DOWNSTREAM CG4546
2L	1315100	2L_1315100_SNP [dm3] 2L_1315100_SNP [dm6]	T	A	3.350e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	9268009	2R_9268009_SNP [dm3] 2R_13380504_SNP [dm6]	G	T	3.352e^-4	0.897	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9837461	3R_9837461_SNP [dm3] 3R_14011739_SNP [dm6]	T	A	3.362e^-4	0.897	INTRON rdx	TF binding site BDTNP1_TFBS_dl
2L	13198313	2L_13198313_SNP [dm3] 2L_13198313_SNP [dm6]	T	A	3.367e^-4	0.897	INTRON CG16972	TF binding site mE1_TFBS_cad
3R	20414550	3R_20414550_SNP [dm3] 3R_24588828_SNP [dm6]	A	G	3.371e^-4	0.897	UPSTREAM mld INTRON mld	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3L	16948107	3L_16948107_SNP [dm3] 3L_16955007_SNP [dm6]	G	T	3.377e^-4	0.897	START_GAINED Nc73EF UTR_5_PRIME Nc73EF UPSTREAM Nc73EF
2R	4328741	2R_4328741_SNP [dm3] 2R_8441236_SNP [dm6]	C	T	3.386e^-4	0.897	UPSTREAM Cyp4ad1 INTRON Cyp4ad1
3R	7719953	3R_7719953_SNP [dm3] 3R_11894231_SNP [dm6]	A	G	3.401e^-4	0.897	UTR_3_PRIME Cad87A UPSTREAM CG6971
2L	1279489	2L_1279489_SNP [dm3] 2L_1279489_SNP [dm6]	G	T	3.404e^-4	0.897	INTRON robo3
2R	5789950	2R_5789950_SNP [dm3] 2R_9902445_SNP [dm6]	C	T	3.407e^-4	0.897	INTRON CG1441	TF binding site mE1_TFBS_cad
X	16671741	X_16671741_SNP [dm3] X_16777708_SNP [dm6]	C	T	3.409e^-4	0.897	INTRON if	TF binding site BDTNP1_TFBS_dl
X	17187957	X_17187957_SNP [dm3] X_17293924_SNP [dm6]	C	T	3.417e^-4	0.897	INTRON CG5445 & 1 other
2R	2075751	2R_2075751_SNP [dm3] 2R_6188246_SNP [dm6]	T	C	3.422e^-4	0.897	UTR_3_PRIME Ptr INTRON Ptr
2R	2075773	2R_2075773_SNP [dm3] 2R_6188268_SNP [dm6]	T	C	3.422e^-4	0.897	UTR_3_PRIME Ptr INTRON Ptr
3R	17556178	3R_17556178_SNP [dm3] 3R_21730456_SNP [dm6]	C	A	3.428e^-4	0.897	UPSTREAM CR43096 INTERGENIC	TF binding site mE1_TFBS_kn
X	12245495	X_12245495_SNP [dm3] X_12351462_SNP [dm6]	T	C	3.433e^-4	0.897	INTERGENIC	TF binding site mE1_TFBS_Trl
X	12245496	X_12245496_SNP [dm3] X_12351463_SNP [dm6]	T	A	3.433e^-4	0.897	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	10785576	3L_10785576_SNP [dm3] 3L_10792476_SNP [dm6]	C	T	3.435e^-4	0.897	INTERGENIC
2L	18693987	2L_18693987_SNP [dm3] 2L_18693987_SNP [dm6]	G	A	3.437e^-4	0.897	INTRON CG10383	TF binding site BDTNP1_TFBS_dl
3R	22164682	3R_22164682_SNP [dm3] 3R_26338960_SNP [dm6]	A	G	3.440e^-4	0.897	INTRON CG33970
X	12245378	X_12245378_SNP [dm3] X_12351345_SNP [dm6]	A	G	3.442e^-4	0.897	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	9494849	2L_9494849_SNP [dm3] 2L_9494849_SNP [dm6]	G	C	3.457e^-4	0.897	START_GAINED Gdi UTR_5_PRIME Gdi UPSTREAM CG33298 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	14464308	X_14464308_SNP [dm3] X_14570275_SNP [dm6]	C	G	3.459e^-4	0.897	INTERGENIC
2L	17107530	2L_17107530_SNP [dm3] 2L_17107530_SNP [dm6]	G	A	3.462e^-4	0.897	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	3259809	3L_3259809_SNP [dm3] 3L_3259809_SNP [dm6]	A	T	3.480e^-4	0.897	INTRON ckd
3R	18174248	3R_18174248_SNP [dm3] 3R_22348526_SNP [dm6]	A	G	3.480e^-4	0.897	INTERGENIC
2R	9836812	2R_9836812_SNP [dm3] 2R_13949307_SNP [dm6]	T	G	3.481e^-4	0.897	SYNONYMOUS_CODING AGO1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14242617	2R_14242617_SNP [dm3] 2R_18355112_SNP [dm6]	C	A	3.486e^-4	0.897	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	18821694	2R_18821694_SNP [dm3] 2R_22934171_SNP [dm6]	T	C	3.492e^-4	0.897	UPSTREAM CG3788 DOWNSTREAM CG3800 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4914626	3R_4914626_SNP [dm3] 3R_9088904_SNP [dm6]	T	A	3.497e^-4	0.897	INTRON pum
3L	21859943	3L_21859943_SNP [dm3] 3L_21866843_SNP [dm6]	G	C	3.501e^-4	0.897	INTRON mub	TF binding site BDTNP1_TFBS_twi
3L	7203103	3L_7203103_INS [dm3] 3L_7210003_INS [dm6]	T	TGAATATCA	3.507e^-4	0.897	INTERGENIC
2L	6167648	2L_6167648_SNP [dm3] 2L_6167648_SNP [dm6]	C	T	3.511e^-4	0.897	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12834949	3R_12834949_SNP [dm3] 3R_17009227_SNP [dm6]	C	G	3.521e^-4	0.897	INTRON CG8907
2L	11941259	2L_11941259_SNP [dm3] 2L_11941259_SNP [dm6]	G	A	3.523e^-4	0.897	INTERGENIC
3L	3865107	3L_3865107_SNP [dm3] 3L_3865107_SNP [dm6]	G	A	3.531e^-4	0.897	UPSTREAM CR45379 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	8345989	3L_8345989_SNP [dm3] 3L_8352889_SNP [dm6]	T	C	3.533e^-4	0.897	SYNONYMOUS_CODING CG17352 UTR_3_PRIME CG17352 DOWNSTREAM GAPcenA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25505855	3R_25505855_SNP [dm3] 3R_29680133_SNP [dm6]	G	C	3.544e^-4	0.897	SYNONYMOUS_CODING Cap-D2 DOWNSTREAM CG7582	TF binding site mE1_TFBS_cad
2L	5819705	2L_5819705_SNP [dm3] 2L_5819705_SNP [dm6]	A	T	3.545e^-4	0.897	INTERGENIC
3L	1350858	3L_1350858_SNP [dm3] 3L_1350858_SNP [dm6]	G	A	3.549e^-4	0.897	UPSTREAM 312 & 1 other INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	18747295	2R_18747295_SNP [dm3] 2R_22859772_SNP [dm6]	G	A	3.559e^-4	0.897	UPSTREAM inaD INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	1253726	2L_1253726_SNP [dm3] 2L_1253726_SNP [dm6]	C	T	3.560e^-4	0.897	INTERGENIC
3L	21859851	3L_21859851_SNP [dm3] 3L_21866751_SNP [dm6]	A	C	3.560e^-4	0.897	INTRON mub	TF binding site BDTNP1_TFBS_twi
3L	4154262	3L_4154262_SNP [dm3] 3L_4154262_SNP [dm6]	G	A	3.570e^-4	0.897	INTRON nab
3L	5480424	3L_5480424_SNP [dm3] 3L_5487324_SNP [dm6]	C	T	3.570e^-4	0.897	INTERGENIC
3L	3771581	3L_3771581_SNP [dm3] 3L_3771581_SNP [dm6]	T	G	3.573e^-4	0.897	INTRON CG32264
3L	4278546	3L_4278546_SNP [dm3] 3L_4278546_SNP [dm6]	A	G	3.581e^-4	0.897	DOWNSTREAM CG1273 INTRON CG1311	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15549965	X_15549965_SNP [dm3] X_15655932_SNP [dm6]	A	T	3.596e^-4	0.897	INTERGENIC
3L	7597895	3L_7597895_SNP [dm3] 3L_7604795_SNP [dm6]	T	C	3.597e^-4	0.897	UPSTREAM CG33275 INTRON CG33275
2R	20499578	2R_20499578_SNP [dm3] 2R_24612055_SNP [dm6]	T	G	3.597e^-4	0.897	UTR_5_PRIME CG3608 UPSTREAM CG4741 INTRON CG4741 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11773719	2L_11773719_SNP [dm3] 2L_11773719_SNP [dm6]	T	G	3.598e^-4	0.897	INTERGENIC
3L	2851056	3L_2851056_SNP [dm3] 3L_2851056_SNP [dm6]	G	A	3.599e^-4	0.897	INTRON CG43444	TF binding site mE1_TFBS_cad
3L	2851139	3L_2851139_SNP [dm3] 3L_2851139_SNP [dm6]	T	C	3.599e^-4	0.897	INTRON CG43444	TF binding site mE1_TFBS_cad
3L	2851174	3L_2851174_SNP [dm3] 3L_2851174_SNP [dm6]	T	A	3.599e^-4	0.897	INTRON CG43444	TF binding site mE1_TFBS_cad
3R	14534716	3R_14534716_SNP [dm3] 3R_18708994_SNP [dm6]	G	A	3.599e^-4	0.897	INTRON VAChT & 1 other
X	17180061	X_17180061_SNP [dm3] X_17286028_SNP [dm6]	T	G	3.599e^-4	0.897	UTR_3_PRIME Fim INTRON CG5445	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17187913	X_17187913_SNP [dm3] X_17293880_SNP [dm6]	G	T	3.599e^-4	0.897	INTRON CG5445 & 1 other
X	17191637	X_17191637_SNP [dm3] X_17297604_SNP [dm6]	G	A	3.599e^-4	0.897	INTRON CG5445 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11281624	X_11281624_SNP [dm3] X_11387591_SNP [dm6]	G	A	3.605e^-4	0.897	INTRON dlg1
2L	18791551	2L_18791551_SNP [dm3] 2L_18791551_SNP [dm6]	G	A	3.611e^-4	0.897	INTRON ham	transposable element FlyBase
3R	10031734	3R_10031734_SNP [dm3] 3R_14206012_SNP [dm6]	G	A	3.617e^-4	0.897	INTRON Dop1R1
3R	10032446	3R_10032446_MNP [dm3] 3R_14206724_MNP [dm6]	TAT	CGA	3.617e^-4	0.897	INTRON Dop1R1
3R	10032452	3R_10032452_DEL [dm3] 3R_14206730_DEL [dm6]	TTTAAACAAAAAACAT...	T	3.617e^-4	0.897	INTRON Dop1R1
3R	10032493	3R_10032493_SNP [dm3] 3R_14206771_SNP [dm6]	T	C	3.617e^-4	0.897	INTRON Dop1R1
3R	10032499	3R_10032499_SNP [dm3] 3R_14206777_SNP [dm6]	A	T	3.617e^-4	0.897	INTRON Dop1R1
2L	7906805	2L_7906805_SNP [dm3] 2L_7906805_SNP [dm6]	A	C	3.618e^-4	0.897	INTRON Snoo
2R	5777704	2R_5777704_SNP [dm3] 2R_9890199_SNP [dm6]	T	C	3.627e^-4	0.897	DOWNSTREAM CG12923 INTRON CG1513 & 1 other
3L	4278980	3L_4278980_SNP [dm3] 3L_4278980_SNP [dm6]	G	T	3.633e^-4	0.897	NON_SYNONYMOUS_CODING CG1311	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
X	15447125	X_15447125_DEL [dm3] X_15553092_DEL [dm6]	TG	T	3.640e^-4	0.897	INTRON Ac13E	TF binding site BDTNP1_TFBS_dl
X	15447133	X_15447133_SNP [dm3] X_15553100_SNP [dm6]	T	A	3.640e^-4	0.897	INTRON Ac13E	TF binding site BDTNP1_TFBS_dl
X	15447173	X_15447173_SNP [dm3] X_15553140_SNP [dm6]	A	T	3.640e^-4	0.897	INTRON Ac13E	TF binding site BDTNP1_TFBS_dl
X	15447622	X_15447622_SNP [dm3] X_15553589_SNP [dm6]	T	G	3.640e^-4	0.897	INTRON Ac13E	TF binding site BDTNP1_TFBS_dl
2L	5443697	2L_5443697_SNP [dm3] 2L_5443697_SNP [dm6]	T	C	3.652e^-4	0.897	INTERGENIC
2L	10050125	2L_10050125_SNP [dm3] 2L_10050125_SNP [dm6]	A	G	3.658e^-4	0.897	SYNONYMOUS_CODING CG33301	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	12744777	2L_12744777_SNP [dm3] 2L_12744777_SNP [dm6]	T	A	3.660e^-4	0.897	UTR_3_PRIME MRP	TF binding site mE1_TFBS_inv
2L	3200036	2L_3200036_SNP [dm3] 2L_3200036_SNP [dm6]	A	T	3.672e^-4	0.897	UPSTREAM CG34393 INTRON CG34393
2L	3200039	2L_3200039_SNP [dm3] 2L_3200039_SNP [dm6]	A	C	3.672e^-4	0.897	UPSTREAM CG34393 INTRON CG34393
2L	3200049	2L_3200049_SNP [dm3] 2L_3200049_SNP [dm6]	T	G	3.672e^-4	0.897	UPSTREAM CG34393 INTRON CG34393
2L	3200058	2L_3200058_SNP [dm3] 2L_3200058_SNP [dm6]	A	G	3.672e^-4	0.897	UPSTREAM CG34393 INTRON CG34393
2R	5338539	2R_5338539_DEL [dm3] 2R_9451034_DEL [dm6]	AGTATGCCTAATC...	A	3.672e^-4	0.897	INTRON Camta
2R	5338560	2R_5338560_SNP [dm3] 2R_9451055_SNP [dm6]	T	A	3.672e^-4	0.897	INTRON Camta
2R	5338567	2R_5338567_SNP [dm3] 2R_9451062_SNP [dm6]	A	G	3.672e^-4	0.897	INTRON Camta
3R	25505718	3R_25505718_SNP [dm3] 3R_29679996_SNP [dm6]	G	A	3.674e^-4	0.897	NON_SYNONYMOUS_CODING Cap-D2 DOWNSTREAM CG7582	TF binding site mE1_TFBS_cad
3L	4153267	3L_4153267_SNP [dm3] 3L_4153267_SNP [dm6]	C	A	3.693e^-4	0.897	DOWNSTREAM CG1299 & 1 other INTERGENIC	regulatory region REDfly_CRMs
X	4285791	X_4285791_SNP [dm3] X_4391758_SNP [dm6]	C	T	3.698e^-4	0.897	INTRON CR32773
X	14212145	X_14212145_SNP [dm3] X_14318112_SNP [dm6]	A	G	3.698e^-4	0.897	UPSTREAM betaNACtes6 INTERGENIC
X	16559395	X_16559395_SNP [dm3] X_16665362_SNP [dm6]	C	T	3.712e^-4	0.897	UPSTREAM CG15865 INTRON r
3L	12532485	3L_12532485_SNP [dm3] 3L_12539385_SNP [dm6]	A	G	3.716e^-4	0.897	DOWNSTREAM sowah INTRON sowah
3L	12532502	3L_12532502_SNP [dm3] 3L_12539402_SNP [dm6]	T	C	3.716e^-4	0.897	DOWNSTREAM sowah INTRON sowah
2R	15054147	2R_15054147_SNP [dm3] 2R_19166642_SNP [dm6]	A	T	3.716e^-4	0.897	INTRON CG10737	TF binding site mE1_TFBS_Trl
3R	14170665	3R_14170665_SNP [dm3] 3R_18344943_SNP [dm6]	T	C	3.724e^-4	0.897	INTRON CG15803
X	18016734	X_18016734_SNP [dm3] X_18122701_SNP [dm6]	A	C	3.741e^-4	0.897	EXON CR45606
X	19475704	X_19475704_SNP [dm3] X_19581671_SNP [dm6]	A	G	3.746e^-4	0.897	UTR_5_PRIME CG14218	TF binding site mE1_TFBS_chinmo
X	15843457	X_15843457_SNP [dm3] X_15949424_SNP [dm6]	G	T	3.750e^-4	0.897	INTRON mmd	TF binding site BDTNP1_TFBS_dl
X	4106811	X_4106811_SNP [dm3] X_4212778_SNP [dm6]	T	C	3.763e^-4	0.897	UPSTREAM CG43288 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	6714026	X_6714026_SNP [dm3] X_6819993_SNP [dm6]	A	G	3.763e^-4	0.897	SYNONYMOUS_CODING Nf-YC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	6899069	X_6899069_SNP [dm3] X_7005036_SNP [dm6]	T	G	3.766e^-4	0.897	DOWNSTREAM Inx2 INTRON Inx7
3R	21539790	3R_21539790_SNP [dm3] 3R_25714068_SNP [dm6]	T	A	3.769e^-4	0.897	INTRON LpR2
3L	8141145	3L_8141145_SNP [dm3] 3L_8148045_SNP [dm6]	C	G	3.770e^-4	0.897	INTRON CG13676	TF binding site mE1_TFBS_sens
2L	14796129	2L_14796129_SNP [dm3] 2L_14796129_SNP [dm6]	T	A	3.771e^-4	0.897	INTRON CG18420
X	12445710	X_12445710_SNP [dm3] X_12551677_SNP [dm6]	T	C	3.773e^-4	0.897	INTRON CG43921
X	1246654	X_1246654_SNP [dm3] X_1352621_SNP [dm6]	T	C	3.773e^-4	0.897	INTRON CG12773	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4433379	X_4433379_SNP [dm3] X_4539346_SNP [dm6]	T	C	3.773e^-4	0.897	SYNONYMOUS_CODING rb INTRON CR32773	TF binding site mE1_TFBS_sens
2L	4312418	2L_4312418_DEL [dm3] 2L_4312418_DEL [dm6]	TT	T	3.784e^-4	0.897	INTRON tutl
2R	17611590	2R_17611590_SNP [dm3] 2R_21724085_SNP [dm6]	C	T	3.792e^-4	0.897	DOWNSTREAM LBR INTERGENIC
2R	2074556	2R_2074556_SNP [dm3] 2R_6187051_SNP [dm6]	G	T	3.794e^-4	0.897	INTRON Ptr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2074557	2R_2074557_SNP [dm3] 2R_6187052_SNP [dm6]	C	T	3.794e^-4	0.897	INTRON Ptr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18439226	3R_18439226_SNP [dm3] 3R_22613504_SNP [dm6]	G	A	3.796e^-4	0.897	UTR_5_PRIME CG31156 UPSTREAM EF-G2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	14572266	2L_14572266_SNP [dm3] 2L_14572266_SNP [dm6]	G	A	3.798e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	5797495	2R_5797495_SNP [dm3] 2R_9909990_SNP [dm6]	G	A	3.800e^-4	0.897	SYNONYMOUS_CODING FMRFa UPSTREAM Etf-QO	TF binding site mE1_TFBS_chinmo
3L	1837272	3L_1837272_SNP [dm3] 3L_1837272_SNP [dm6]	A	G	3.806e^-4	0.897	INTERGENIC
3L	23715834	3L_23715834_SNP [dm3] 3L_23722734_SNP [dm6]	A	T	3.807e^-4	0.897	INTERGENIC
3L	20503969	3L_20503969_SNP [dm3] 3L_20510869_SNP [dm6]	G	A	3.809e^-4	0.897	UTR_3_PRIME CG32425 INTRON CG32425	TF binding site mE1_TFBS_cad
3R	26807134	3R_26807134_SNP [dm3] 3R_30981412_SNP [dm6]	A	T	3.817e^-4	0.897	INTRON 5-HT7
3L	13306492	3L_13306492_SNP [dm3] 3L_13313392_SNP [dm6]	G	A	3.819e^-4	0.897	INTERGENIC
3L	17817693	3L_17817693_SNP [dm3] 3L_17824593_SNP [dm6]	C	G	3.820e^-4	0.897	INTRON Grd
X	20230726	X_20230726_SNP [dm3] X_20359699_SNP [dm6]	A	G	3.821e^-4	0.897	INTERGENIC
3L	11926690	3L_11926690_SNP [dm3] 3L_11933590_SNP [dm6]	C	A	3.822e^-4	0.897	SYNONYMOUS_CODING byn INTRON CG44837	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	5976402	3R_5976402_SNP [dm3] 3R_10150680_SNP [dm6]	G	C	3.826e^-4	0.897	DOWNSTREAM CG34303 INTRON Invadolysin
3R	23984003	3R_23984003_SNP [dm3] 3R_28158281_SNP [dm6]	C	T	3.832e^-4	0.897	INTRON CG34354	TF binding site mE1_TFBS_inv
2R	9268010	2R_9268010_SNP [dm3] 2R_13380505_SNP [dm6]	C	T	3.834e^-4	0.897	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25530024	3R_25530024_SNP [dm3] 3R_29704302_SNP [dm6]	T	C	3.842e^-4	0.897	INTERGENIC
2L	4336023	2L_4336023_SNP [dm3] 2L_4336023_SNP [dm6]	C	T	3.843e^-4	0.897	INTRON Atet	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	6960626	3L_6960626_SNP [dm3] 3L_6967526_SNP [dm6]	A	G	3.844e^-4	0.897	SYNONYMOUS_CODING CG10064 DOWNSTREAM Mis12	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	14399446	2L_14399446_SNP [dm3] 2L_14399446_SNP [dm6]	C	T	3.850e^-4	0.897	INTRON elB
3L	2963716	3L_2963716_INS [dm3] 3L_2963716_INS [dm6]	G	TGCACACTAAAAGA...	3.852e^-4	0.897	UTR_3_PRIME Or63a
X	11281622	X_11281622_SNP [dm3] X_11387589_SNP [dm6]	A	T	3.853e^-4	0.897	INTRON dlg1
X	11281669	X_11281669_SNP [dm3] X_11387636_SNP [dm6]	A	C	3.853e^-4	0.897	INTRON dlg1
X	13128388	X_13128388_SNP [dm3] X_13234355_SNP [dm6]	G	A	3.859e^-4	0.897	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
X	4703120	X_4703120_SNP [dm3] X_4809087_SNP [dm6]	T	G	3.860e^-4	0.897	INTERGENIC
3L	1266586	3L_1266586_SNP [dm3] 3L_1266586_SNP [dm6]	A	G	3.881e^-4	0.897	INTRON CG9134
3R	16152953	3R_16152953_SNP [dm3] 3R_20327231_SNP [dm6]	T	G	3.889e^-4	0.897	SYNONYMOUS_CODING CG4360	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	16526126	3L_16526126_DEL [dm3] 3L_16533026_DEL [dm6]	AA	A	3.919e^-4	0.897	INTRON CG43373
3L	16526144	3L_16526144_SNP [dm3] 3L_16533044_SNP [dm6]	A	C	3.919e^-4	0.897	INTRON CG43373
2L	10130545	2L_10130545_SNP [dm3] 2L_10130545_SNP [dm6]	A	G	3.920e^-4	0.897	INTRON CG44153
X	18041155	X_18041155_SNP [dm3] X_18147122_SNP [dm6]	T	C	3.920e^-4	0.897	INTERGENIC
3L	12692870	3L_12692870_SNP [dm3] 3L_12699770_SNP [dm6]	C	T	3.920e^-4	0.897	INTRON mirr	TF binding site BDTNP1_TFBS_twi
2R	9447956	2R_9447956_SNP [dm3] 2R_13560451_SNP [dm6]	A	T	3.936e^-4	0.897	UTR_3_PRIME CG13334 DOWNSTREAM CG13334	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	3158979	X_3158979_SNP [dm3] X_3264946_SNP [dm6]	C	T	3.938e^-4	0.897	INTRON dnc
2L	16501429	2L_16501429_SNP [dm3] 2L_16501429_SNP [dm6]	T	C	3.941e^-4	0.897	UPSTREAM Tpr2 INTRON Tpr2	TF binding site mE1_TFBS_Trl
2L	11087257	2L_11087257_SNP [dm3] 2L_11087257_SNP [dm6]	T	C	3.943e^-4	0.897	INTRON CG16854	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9857580	2L_9857580_SNP [dm3] 2L_9857580_SNP [dm6]	G	A	3.950e^-4	0.897	INTRON nAChRalpha6
2R	1132237	2R_1132237_SNP [dm3] 2R_5244732_SNP [dm6]	A	G	3.964e^-4	0.897	INTRON Nipped-A	transposable element FlyBase
2L	13201366	2L_13201366_SNP [dm3] 2L_13201366_SNP [dm6]	A	G	3.969e^-4	0.897	SYNONYMOUS_CODING CG16972	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	17462726	3R_17462726_SNP [dm3] 3R_21637004_SNP [dm6]	A	G	3.972e^-4	0.897	INTRON E2f	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	23974397	3R_23974397_SNP [dm3] 3R_28148675_SNP [dm6]	T	A	3.981e^-4	0.897	INTRON CG34354
2R	18754035	2R_18754035_SNP [dm3] 2R_22866512_SNP [dm6]	C	G	3.987e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10032428	3R_10032428_SNP [dm3] 3R_14206706_SNP [dm6]	C	T	3.989e^-4	0.897	INTRON Dop1R1
2R	13189437	2R_13189437_SNP [dm3] 2R_17301932_SNP [dm6]	T	G	3.998e^-4	0.897	INTRON mbl
2R	7796286	2R_7796286_SNP [dm3] 2R_11908781_SNP [dm6]	A	G	4.006e^-4	0.897	INTRON CG13183	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	19753403	2R_19753403_DEL [dm3] 2R_23865880_DEL [dm6]	GTTATGCACGCCTTTGAGTT...	G	4.019e^-4	0.897	UPSTREAM CG4585 DOWNSTREAM Thiolase INTRON CG5569	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	22430435	3R_22430435_SNP [dm3] 3R_26604713_SNP [dm6]	T	G	4.020e^-4	0.897	DOWNSTREAM scrib INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	13453903	3R_13453903_SNP [dm3] 3R_17628181_SNP [dm6]	C	A	4.020e^-4	0.897	SYNONYMOUS_CODING CG14325 DOWNSTREAM tRNA:V4:90C
2R	5338572	2R_5338572_SNP [dm3] 2R_9451067_SNP [dm6]	T	C	4.026e^-4	0.897	INTRON Camta
2L	4337603	2L_4337603_SNP [dm3] 2L_4337603_SNP [dm6]	A	G	4.036e^-4	0.897	INTRON Atet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5338634	2R_5338634_SNP [dm3] 2R_9451129_SNP [dm6]	G	T	4.038e^-4	0.897	INTRON Camta
2L	8339071	2L_8339071_SNP [dm3] 2L_8339071_SNP [dm6]	C	T	4.050e^-4	0.897	INTRON CG14274
3L	22970395	3L_22970395_DEL [dm3] 3L_22977295_DEL [dm6]	TC	T	4.055e^-4	0.897	INTERGENIC	transposable element FlyBase
3R	5191856	3R_5191856_SNP [dm3] 3R_9366134_SNP [dm6]	T	A	4.057e^-4	0.897	UPSTREAM CG8129 INTRON CG8129
3L	5027791	3L_5027791_SNP [dm3] 3L_5027791_SNP [dm6]	A	T	4.063e^-4	0.897	INTRON Con
3R	9820511	3R_9820511_SNP [dm3] 3R_13994789_SNP [dm6]	A	G	4.066e^-4	0.897	INTRON rdx
3L	12818227	3L_12818227_SNP [dm3] 3L_12825127_SNP [dm6]	A	T	4.073e^-4	0.897	UTR_3_PRIME CG10960 DOWNSTREAM CG42588
3R	22167241	3R_22167241_SNP [dm3] 3R_26341519_SNP [dm6]	C	A	4.075e^-4	0.897	INTRON CG33970
2L	13728633	2L_13728633_DEL [dm3] 2L_13728633_DEL [dm6]	GGTCTCGAA	ATG	4.095e^-4	0.897	INTERGENIC
2R	12867455	2R_12867455_SNP [dm3] 2R_16979950_SNP [dm6]	T	A	4.097e^-4	0.897	INTRON Cbp53E
2R	12867458	2R_12867458_SNP [dm3] 2R_16979953_SNP [dm6]	C	A	4.097e^-4	0.897	INTRON Cbp53E
3R	14207484	3R_14207484_INS [dm3] 3R_18381762_INS [dm6]	T	TT	4.111e^-4	0.897	UTR_3_PRIME CG14309 UPSTREAM CG7675
X	1306291	X_1306291_DEL [dm3] X_1412258_DEL [dm6]	GTGCCGCTGG	G	4.114e^-4	0.897	INTRON futsch	TF binding site mE1_TFBS_chinmo
3R	23520543	3R_23520543_SNP [dm3] 3R_27694821_SNP [dm6]	A	C	4.115e^-4	0.897	UPSTREAM Acp98AB & 1 other DOWNSTREAM CG43319 INTERGENIC
X	16776237	X_16776237_SNP [dm3] X_16882204_SNP [dm6]	T	C	4.123e^-4	0.897	SYNONYMOUS_CODING CG4872 DOWNSTREAM CG9104	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	5650572	X_5650572_SNP [dm3] X_5756539_SNP [dm6]	A	G	4.123e^-4	0.897	UTR_5_PRIME CG15771 INTRON CG15771 EXON CR45528	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h
X	5650988	X_5650988_SNP [dm3] X_5756955_SNP [dm6]	A	C	4.123e^-4	0.897	UPSTREAM CR45528 INTRON CG15771
X	5651004	X_5651004_DEL [dm3] X_5756971_DEL [dm6]	TAGAAT	T	4.123e^-4	0.897	UPSTREAM CR45528 INTRON CG15771
X	5651011	X_5651011_SNP [dm3] X_5756978_SNP [dm6]	T	A	4.123e^-4	0.897	UPSTREAM CR45528 INTRON CG15771
X	5651013	X_5651013_SNP [dm3] X_5756980_SNP [dm6]	C	A	4.123e^-4	0.897	UPSTREAM CR45528 INTRON CG15771
X	5651035	X_5651035_SNP [dm3] X_5757002_SNP [dm6]	A	T	4.123e^-4	0.897	UPSTREAM CR45528 INTRON CG15771
X	5653900	X_5653900_SNP [dm3] X_5759867_SNP [dm6]	T	A	4.123e^-4	0.897	DOWNSTREAM MAPk-Ak2 & 1 other INTERGENIC
3R	7698245	3R_7698245_SNP [dm3] 3R_11872523_SNP [dm6]	G	A	4.125e^-4	0.897	INTERGENIC
3L	22514731	3L_22514731_SNP [dm3] 3L_22521631_SNP [dm6]	C	T	4.129e^-4	0.897	INTERGENIC
X	21076302	X_21076302_SNP [dm3] X_21205275_SNP [dm6]	A	T	4.133e^-4	0.897	DOWNSTREAM CG32521 INTERGENIC
X	4298774	X_4298774_SNP [dm3] X_4404741_SNP [dm6]	G	A	4.144e^-4	0.897	INTRON CR32773
2L	12536259	2L_12536259_SNP [dm3] 2L_12536259_SNP [dm6]	T	A	4.151e^-4	0.897	INTRON bun
X	18498083	X_18498083_SNP [dm3] X_18604050_SNP [dm6]	T	A	4.157e^-4	0.897	INTERGENIC
2L	8899867	2L_8899867_SNP [dm3] 2L_8899867_SNP [dm6]	C	G	4.158e^-4	0.897	INTRON CG34398
3L	3168077	3L_3168077_SNP [dm3] 3L_3168077_SNP [dm6]	G	C	4.158e^-4	0.897	SYNONYMOUS_CODING CG32280
3L	5961565	3L_5961565_SNP [dm3] 3L_5968465_SNP [dm6]	T	C	4.160e^-4	0.897	SYNONYMOUS_CODING CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9990822	3R_9990822_SNP [dm3] 3R_14165100_SNP [dm6]	G	C	4.162e^-4	0.897	DOWNSTREAM Dop1R1 INTERGENIC
3L	3767876	3L_3767876_SNP [dm3] 3L_3767876_SNP [dm6]	A	C	4.164e^-4	0.897	INTRON CG32264	TF binding site mE1_TFBS_bab1
3L	3767879	3L_3767879_SNP [dm3] 3L_3767879_SNP [dm6]	G	T	4.164e^-4	0.897	INTRON CG32264	TF binding site mE1_TFBS_bab1
3L	3767938	3L_3767938_SNP [dm3] 3L_3767938_SNP [dm6]	C	A	4.164e^-4	0.897	INTRON CG32264	TF binding site mE1_TFBS_bab1
2R	17396854	2R_17396854_SNP [dm3] 2R_21509349_SNP [dm6]	G	A	4.165e^-4	0.897	INTRON MESK2
3L	4503203	3L_4503203_SNP [dm3] 3L_4503203_SNP [dm6]	C	T	4.168e^-4	0.897	SYNONYMOUS_CODING NT1	TF binding site mE1_TFBS_cad
3R	21539769	3R_21539769_SNP [dm3] 3R_25714047_SNP [dm6]	C	T	4.174e^-4	0.897	INTRON LpR2
3L	18901421	3L_18901421_SNP [dm3] 3L_18908321_SNP [dm6]	A	G	4.179e^-4	0.897	SYNONYMOUS_CODING CG6841 UTR_3_PRIME Ir75d & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6137165	2R_6137165_SNP [dm3] 2R_10249660_SNP [dm6]	G	A	4.180e^-4	0.897	UTR_3_PRIME Syb DOWNSTREAM CG12914 INTRON CG12913	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17976655	2R_17976655_SNP [dm3] 2R_22089150_SNP [dm6]	T	C	4.181e^-4	0.897	UPSTREAM CG13502 DOWNSTREAM CG43393 INTERGENIC
2L	1011515	2L_1011515_SNP [dm3] 2L_1011515_SNP [dm6]	C	T	4.183e^-4	0.897	UTR_3_PRIME IA-2
2L	4291898	2L_4291898_SNP [dm3] 2L_4291898_SNP [dm6]	C	T	4.195e^-4	0.897	INTRON tutl
3L	1105351	3L_1105351_SNP [dm3] 3L_1105351_SNP [dm6]	T	C	4.197e^-4	0.897	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19629280	2R_19629280_SNP [dm3] 2R_23741757_SNP [dm6]	C	T	4.211e^-4	0.897	INTRON egl
2L	6940696	2L_6940696_SNP [dm3] 2L_6940696_SNP [dm6]	A	G	4.213e^-4	0.897	INTRON CG18304	TF binding site BDTNP1_TFBS_dl
2R	5439799	2R_5439799_INS [dm3] 2R_9552294_INS [dm6]	A	ACATA	4.218e^-4	0.897	UPSTREAM CR43651 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2L	5261825	2L_5261825_SNP [dm3] 2L_5261825_SNP [dm6]	G	C	4.223e^-4	0.897	INTRON tkv	TF binding site BDTNP1_TFBS_twi
2L	6165961	2L_6165961_SNP [dm3] 2L_6165961_SNP [dm6]	A	G	4.225e^-4	0.897	INTERGENIC
3L	12651234	3L_12651234_SNP [dm3] 3L_12658134_SNP [dm6]	G	A	4.231e^-4	0.897	UPSTREAM CR44553 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	8494308	2R_8494308_SNP [dm3] 2R_12606803_SNP [dm6]	A	G	4.258e^-4	0.897	INTRON Amph
2L	7493558	2L_7493558_SNP [dm3] 2L_7493558_SNP [dm6]	G	A	4.271e^-4	0.897	INTRON Ziz
X	17180917	X_17180917_SNP [dm3] X_17286884_SNP [dm6]	A	T	4.273e^-4	0.897	INTRON CG5445 & 1 other	TF binding site mE1_TFBS_HSA
X	17181219	X_17181219_SNP [dm3] X_17287186_SNP [dm6]	G	A	4.273e^-4	0.897	SYNONYMOUS_CODING Fim INTRON CG5445	TF binding site mE1_TFBS_HSA
3R	17555347	3R_17555347_SNP [dm3] 3R_21729625_SNP [dm6]	C	T	4.274e^-4	0.897	EXON CR43096
2L	10956618	2L_10956618_INS [dm3] 2L_10956618_INS [dm6]	T	TCCATATCT	4.281e^-4	0.897	INTRON dpr2
X	18729145	X_18729145_SNP [dm3] X_18835112_SNP [dm6]	T	A	4.281e^-4	0.897	INTRON Pvf1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	10030630	3R_10030630_SNP [dm3] 3R_14204908_SNP [dm6]	T	G	4.282e^-4	0.897	INTRON Dop1R1
X	10290809	X_10290809_SNP [dm3] X_10396776_SNP [dm6]	A	G	4.285e^-4	0.897	INTRON flw
2R	20878907	2R_20878907_SNP [dm3] 2R_24991384_SNP [dm6]	G	A	4.287e^-4	0.897	DOWNSTREAM CG3829 INTRON zip
2R	14211211	2R_14211211_SNP [dm3] 2R_18323706_SNP [dm6]	G	T	4.287e^-4	0.897	INTRON sbb	TF binding site BDTNP1_TFBS_twi
3L	4275537	3L_4275537_SNP [dm3] 3L_4275537_SNP [dm6]	C	T	4.288e^-4	0.897	SYNONYMOUS_CODING CG1273	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25529353	3R_25529353_SNP [dm3] 3R_29703631_SNP [dm6]	G	A	4.293e^-4	0.897	INTERGENIC
X	17077992	X_17077992_SNP [dm3] X_17183959_SNP [dm6]	A	C	4.297e^-4	0.897	UPSTREAM CR44026 INTRON baz
3R	8760903	3R_8760903_DEL [dm3] 3R_12935181_DEL [dm6]	CATCAGCAC	C	4.299e^-4	0.897	DOWNSTREAM beat-Vb INTERGENIC
3R	14688193	3R_14688193_SNP [dm3] 3R_18862471_SNP [dm6]	C	T	4.303e^-4	0.897	INTERGENIC
2L	6247696	2L_6247696_SNP [dm3] 2L_6247696_SNP [dm6]	G	A	4.309e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18137716	3R_18137716_SNP [dm3] 3R_22311994_SNP [dm6]	T	G	4.312e^-4	0.897	SYNONYMOUS_CODING CG34377
2L	4958320	2L_4958320_DEL [dm3] 2L_4958320_DEL [dm6]	CACTTCT	C	4.320e^-4	0.897	UPSTREAM CG34124 DOWNSTREAM Marcal1 INTERGENIC
3L	2978526	3L_2978526_SNP [dm3] 3L_2978526_SNP [dm6]	C	A	4.323e^-4	0.897	INTERGENIC
X	14706544	X_14706544_SNP [dm3] X_14812511_SNP [dm6]	G	C	4.324e^-4	0.897	INTRON rut
2L	20810679	2L_20810679_DEL [dm3] 2L_20810679_DEL [dm6]	AAA	A	4.325e^-4	0.897	INTRON CG9328
X	8840304	X_8840304_INS [dm3] X_8946271_INS [dm6]	G	GG	4.330e^-4	0.897	INTRON rdgA
X	1653060	X_1653060_SNP [dm3] X_1759027_SNP [dm6]	A	C	4.337e^-4	0.897	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	10208605	X_10208605_SNP [dm3] X_10314572_SNP [dm6]	A	T	4.343e^-4	0.897	INTRON alpha-Man-I
X	17181927	X_17181927_SNP [dm3] X_17287894_SNP [dm6]	G	A	4.345e^-4	0.897	INTRON CG5445 & 1 other	TF binding site mE1_TFBS_cad
3L	13771298	3L_13771298_SNP [dm3] 3L_13778198_SNP [dm6]	C	T	4.355e^-4	0.897	UTR_5_PRIME bru-3
2R	4813060	2R_4813060_SNP [dm3] 2R_8925555_SNP [dm6]	G	T	4.363e^-4	0.897	UPSTREAM CG8237 DOWNSTREAM CG8243 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	5965552	2L_5965552_SNP [dm3] 2L_5965552_SNP [dm6]	A	G	4.365e^-4	0.897	SYNONYMOUS_CODING CG13992 UPSTREAM psd
2L	8273643	2L_8273643_SNP [dm3] 2L_8273643_SNP [dm6]	A	G	4.381e^-4	0.897	UTR_5_PRIME Btk29A INTRON Btk29A
3R	9837472	3R_9837472_SNP [dm3] 3R_14011750_SNP [dm6]	C	A	4.381e^-4	0.897	INTRON rdx	TF binding site BDTNP1_TFBS_dl
3R	23965079	3R_23965079_SNP [dm3] 3R_28139357_SNP [dm6]	A	C	4.384e^-4	0.897	INTERGENIC
3R	23967237	3R_23967237_SNP [dm3] 3R_28141515_SNP [dm6]	C	T	4.384e^-4	0.897	INTERGENIC
X	10863535	X_10863535_SNP [dm3] X_10969502_SNP [dm6]	T	A	4.386e^-4	0.897	INTRON CG42339
X	10863543	X_10863543_SNP [dm3] X_10969510_SNP [dm6]	A	C	4.386e^-4	0.897	INTRON CG42339
3R	25688173	3R_25688173_SNP [dm3] 3R_29862451_SNP [dm6]	T	C	4.396e^-4	0.897	UPSTREAM CG15514 & 2 others INTRON RpS8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	25693582	3R_25693582_SNP [dm3] 3R_29867860_SNP [dm6]	A	C	4.396e^-4	0.897	UPSTREAM Zip99C INTRON Zip99C	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z
3R	25694826	3R_25694826_SNP [dm3] 3R_29869104_SNP [dm6]	A	G	4.396e^-4	0.897	UPSTREAM CG34133 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
3R	25696100	3R_25696100_SNP [dm3] 3R_29870378_SNP [dm6]	C	T	4.396e^-4	0.897	INTRON CG34133
3R	25696495	3R_25696495_SNP [dm3] 3R_29870773_SNP [dm6]	T	G	4.396e^-4	0.897	INTRON CG34133
3R	25703366	3R_25703366_SNP [dm3] 3R_29877644_SNP [dm6]	T	A	4.396e^-4	0.897	UTR_5_PRIME CG31038 INTRON CG31038	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	12269559	X_12269559_SNP [dm3] X_12375526_SNP [dm6]	A	C	4.401e^-4	0.897	DOWNSTREAM Ir11a INTERGENIC
2L	7227972	2L_7227972_SNP [dm3] 2L_7227972_SNP [dm6]	T	C	4.405e^-4	0.897	SYNONYMOUS_CODING CG43799 INTRON Ndae1
2R	10423112	2R_10423112_SNP [dm3] 2R_14535607_SNP [dm6]	A	G	4.412e^-4	0.897	INTRON ttv
3L	9299799	3L_9299799_SNP [dm3] 3L_9306699_SNP [dm6]	C	A	4.415e^-4	0.897	INTERGENIC
X	10877947	X_10877947_SNP [dm3] X_10983914_SNP [dm6]	C	T	4.419e^-4	0.897	INTRON CG42339
3L	21693081	3L_21693081_SNP [dm3] 3L_21699981_SNP [dm6]	C	A	4.430e^-4	0.897	INTRON CG32447
3R	10032348	3R_10032348_SNP [dm3] 3R_14206626_SNP [dm6]	T	G	4.437e^-4	0.897	INTRON Dop1R1
3L	6212038	3L_6212038_SNP [dm3] 3L_6218938_SNP [dm6]	T	A	4.440e^-4	0.897	UPSTREAM LanA INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	19639516	2R_19639516_SNP [dm3] 2R_23751993_SNP [dm6]	A	T	4.446e^-4	0.897	SYNONYMOUS_CODING CG11300 UPSTREAM CG5532 DOWNSTREAM CG12491	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	4428374	2L_4428374_SNP [dm3] 2L_4428374_SNP [dm6]	C	T	4.449e^-4	0.897	INTRON CG15431
3L	6376326	3L_6376326_SNP [dm3] 3L_6383226_SNP [dm6]	C	T	4.449e^-4	0.897	INTERGENIC
3L	9197788	3L_9197788_SNP [dm3] 3L_9204688_SNP [dm6]	G	A	4.449e^-4	0.897	SYNONYMOUS_CODING Slc45-1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	1192858	X_1192858_SNP [dm3] X_1298825_SNP [dm6]	C	A	4.452e^-4	0.897	UPSTREAM CG32811 INTRON DAAM	TF binding site mE1_TFBS_chinmo
3L	6370070	3L_6370070_SNP [dm3] 3L_6376970_SNP [dm6]	T	A	4.457e^-4	0.897	INTERGENIC
3L	6370151	3L_6370151_SNP [dm3] 3L_6377051_SNP [dm6]	A	G	4.457e^-4	0.897	INTERGENIC
2L	7175795	2L_7175795_SNP [dm3] 2L_7175795_SNP [dm6]	A	T	4.459e^-4	0.897	INTERGENIC
3R	14995658	3R_14995658_SNP [dm3] 3R_19169936_SNP [dm6]	A	G	4.462e^-4	0.897	UTR_3_PRIME sqz	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	5456110	2L_5456110_SNP [dm3] 2L_5456110_SNP [dm6]	T	A	4.462e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4775515	3L_4775515_SNP [dm3] 3L_4775515_SNP [dm6]	G	A	4.485e^-4	0.897	INTRON RhoGEF64C
2L	7130364	2L_7130364_SNP [dm3] 2L_7130364_SNP [dm6]	G	A	4.491e^-4	0.897	INTRON Pvf3
2L	1237478	2L_1237478_SNP [dm3] 2L_1237478_SNP [dm6]	C	T	4.493e^-4	0.897	INTERGENIC
2L	1237480	2L_1237480_SNP [dm3] 2L_1237480_SNP [dm6]	G	A	4.493e^-4	0.897	INTERGENIC
3L	22902120	3L_22902120_SNP [dm3] 3L_22909020_SNP [dm6]	G	C	4.494e^-4	0.897	UPSTREAM CR45661 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	22903337	3L_22903337_SNP [dm3] 3L_22910237_SNP [dm6]	C	T	4.494e^-4	0.897	UPSTREAM CG12768 DOWNSTREAM CR45661 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	22903718	3L_22903718_SNP [dm3] 3L_22910618_SNP [dm6]	C	T	4.494e^-4	0.897	UPSTREAM CG12768 DOWNSTREAM CR45661 INTRON CG12768	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	6165979	2L_6165979_INS [dm3] 2L_6165979_INS [dm6]	T	TGCC	4.497e^-4	0.897	INTERGENIC
3L	6223467	3L_6223467_SNP [dm3] 3L_6230367_SNP [dm6]	T	A	4.498e^-4	0.897	INTERGENIC
2R	5778464	2R_5778464_SNP [dm3] 2R_9890959_SNP [dm6]	T	C	4.501e^-4	0.897	SYNONYMOUS_CODING CG30008 UPSTREAM CG30007 INTRON CG1513	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_sens
2L	6273715	2L_6273715_DEL [dm3] 2L_6273715_DEL [dm6]	TAC	T	4.514e^-4	0.897	INTRON Ddr
3R	22886975	3R_22886975_SNP [dm3] 3R_27061253_SNP [dm6]	T	C	4.516e^-4	0.897	NON_SYNONYMOUS_CODING Nep5 UPSTREAM CG34292
2L	17202525	2L_17202525_SNP [dm3] 2L_17202525_SNP [dm6]	A	C	4.520e^-4	0.897	INTRON beat-IIIc
2L	3321310	2L_3321310_DEL [dm3] 2L_3321310_DEL [dm6]	ATTGCCCCATTAA...	A	4.527e^-4	0.897	INTRON CG8837	TF binding site mE1_TFBS_chinmo
3L	6791977	3L_6791977_SNP [dm3] 3L_6798877_SNP [dm6]	A	G	4.528e^-4	0.897	INTERGENIC
3L	12961136	3L_12961136_SNP [dm3] 3L_12968036_SNP [dm6]	T	C	4.536e^-4	0.897	UPSTREAM Or69a INTERGENIC
2R	12616089	2R_12616089_SNP [dm3] 2R_16728584_SNP [dm6]	G	T	4.549e^-4	0.897	INTRON CG30463
2L	4958247	2L_4958247_SNP [dm3] 2L_4958247_SNP [dm6]	A	G	4.562e^-4	0.897	UTR_3_PRIME Marcal1 UPSTREAM CG34124
3L	7990244	3L_7990244_INS [dm3] 3L_7997144_INS [dm6]	T	TG	4.562e^-4	0.897	INTRON nmo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9836824	2R_9836824_SNP [dm3] 2R_13949319_SNP [dm6]	T	A	4.566e^-4	0.897	SYNONYMOUS_CODING AGO1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17974799	2R_17974799_SNP [dm3] 2R_22087294_SNP [dm6]	T	A	4.571e^-4	0.897	UTR_5_PRIME CG13502 INTRON CG13502
3R	11348782	3R_11348782_SNP [dm3] 3R_15523060_SNP [dm6]	A	G	4.585e^-4	0.897	INTERGENIC
2R	20147793	2R_20147793_SNP [dm3] 2R_24260270_SNP [dm6]	A	G	4.585e^-4	0.897	INTRON CG3376	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	5328248	X_5328248_INS [dm3] X_5434215_INS [dm6]	G	GG	4.590e^-4	0.897	INTRON CR44471
X	19358074	X_19358074_SNP [dm3] X_19464041_SNP [dm6]	T	A	4.597e^-4	0.897	INTRON kek5
X	7530096	X_7530096_SNP [dm3] X_7636063_SNP [dm6]	A	C	4.597e^-4	0.897	INTRON ct
3R	25909200	3R_25909200_SNP [dm3] 3R_30083478_SNP [dm6]	G	C	4.611e^-4	0.897	INTRON sima
2L	12761140	2L_12761140_SNP [dm3] 2L_12761140_SNP [dm6]	T	A	4.612e^-4	0.897	NON_SYNONYMOUS_CODING CG15483
X	18041681	X_18041681_DEL [dm3] X_18147648_DEL [dm6]	AA	A	4.615e^-4	0.897	INTERGENIC
3R	11753599	3R_11753599_SNP [dm3] 3R_15927877_SNP [dm6]	C	T	4.621e^-4	0.897	DOWNSTREAM CG34276 INTRON CG4221
X	12126521	X_12126521_SNP [dm3] X_12232488_SNP [dm6]	T	C	4.633e^-4	0.897	INTRON Ten-a
2R	19102513	2R_19102513_SNP [dm3] 2R_23214990_SNP [dm6]	G	A	4.635e^-4	0.897	INTERGENIC
2R	19640766	2R_19640766_SNP [dm3] 2R_23753243_SNP [dm6]	C	A	4.638e^-4	0.897	UTR_3_PRIME CG5532 DOWNSTREAM CG9850 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	1021814	2L_1021814_SNP [dm3] 2L_1021814_SNP [dm6]	C	T	4.644e^-4	0.897	INTRON IA-2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3303590	3L_3303590_SNP [dm3] 3L_3303590_SNP [dm6]	C	T	4.645e^-4	0.897	UPSTREAM ZnT63C & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2L	11344871	2L_11344871_SNP [dm3] 2L_11344871_SNP [dm6]	T	A	4.651e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	17540640	3L_17540640_SNP [dm3] 3L_17547540_SNP [dm6]	T	G	4.653e^-4	0.897	DOWNSTREAM Nedd4 & 1 other INTRON Jon74E	TF binding site mE1_TFBS_cad
3R	21896300	3R_21896300_SNP [dm3] 3R_26070578_SNP [dm6]	G	A	4.656e^-4	0.897	EXON CR44950
2R	11659954	2R_11659954_SNP [dm3] 2R_15772449_SNP [dm6]	T	G	4.658e^-4	0.897	INTRON Zasp52
2L	8440838	2L_8440838_SNP [dm3] 2L_8440838_SNP [dm6]	T	C	4.676e^-4	0.897	SYNONYMOUS_CODING mus201
3R	22167294	3R_22167294_SNP [dm3] 3R_26341572_SNP [dm6]	G	T	4.678e^-4	0.897	INTRON CG33970
3R	21539723	3R_21539723_SNP [dm3] 3R_25714001_SNP [dm6]	T	C	4.682e^-4	0.897	INTRON LpR2
3R	25913671	3R_25913671_SNP [dm3] 3R_30087949_SNP [dm6]	A	T	4.688e^-4	0.897	INTRON sima
3L	10010272	3L_10010272_SNP [dm3] 3L_10017172_SNP [dm6]	T	G	4.699e^-4	0.897	INTRON dpr6
2L	9676704	2L_9676704_SNP [dm3] 2L_9676704_SNP [dm6]	C	A	4.706e^-4	0.897	INTERGENIC
2L	11440649	2L_11440649_SNP [dm3] 2L_11440649_SNP [dm6]	C	T	4.707e^-4	0.897	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11344867	2L_11344867_SNP [dm3] 2L_11344867_SNP [dm6]	A	G	4.724e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	16639446	2L_16639446_SNP [dm3] 2L_16639446_SNP [dm6]	C	G	4.736e^-4	0.897	INTRON CG42389
X	4192938	X_4192938_SNP [dm3] X_4298905_SNP [dm6]	C	T	4.743e^-4	0.897	INTERGENIC
3L	806240	3L_806240_SNP [dm3] 3L_806240_SNP [dm6]	G	A	4.746e^-4	0.897	INTERGENIC
X	18729158	X_18729158_SNP [dm3] X_18835125_SNP [dm6]	A	G	4.746e^-4	0.897	INTRON Pvf1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	4328734	2R_4328734_SNP [dm3] 2R_8441229_SNP [dm6]	A	T	4.755e^-4	0.897	UPSTREAM Cyp4ad1 INTRON Cyp4ad1
3L	12077186	3L_12077186_SNP [dm3] 3L_12084086_SNP [dm6]	G	A	4.758e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
X	14168119	X_14168119_SNP [dm3] X_14274086_SNP [dm6]	C	T	4.776e^-4	0.897	INTRON na	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	25909823	3R_25909823_DEL [dm3] 3R_30084101_DEL [dm6]	AA	T	4.793e^-4	0.897	INTRON sima	TF binding site mE1_TFBS_Trl
2L	11086884	2L_11086884_SNP [dm3] 2L_11086884_SNP [dm6]	C	A	4.801e^-4	0.897	UTR_5_PRIME CG16854	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	11199373	X_11199373_SNP [dm3] X_11305340_SNP [dm6]	C	T	4.801e^-4	0.897	INTERGENIC
2L	15374453	2L_15374453_SNP [dm3] 2L_15374453_SNP [dm6]	G	A	4.805e^-4	0.897	INTERGENIC
3R	13453885	3R_13453885_SNP [dm3] 3R_17628163_SNP [dm6]	T	C	4.808e^-4	0.897	SYNONYMOUS_CODING CG14325 DOWNSTREAM tRNA:V4:90C
2L	15168795	2L_15168795_SNP [dm3] 2L_15168795_SNP [dm6]	G	T	4.820e^-4	0.897	INTRON CG4168
3R	18423176	3R_18423176_SNP [dm3] 3R_22597454_SNP [dm6]	A	T	4.822e^-4	0.897	INTRON Efa6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8881294	2L_8881294_SNP [dm3] 2L_8881294_SNP [dm6]	G	A	4.849e^-4	0.897	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	23971042	3R_23971042_SNP [dm3] 3R_28145320_SNP [dm6]	T	A	4.850e^-4	0.897	INTERGENIC
3R	23971049	3R_23971049_SNP [dm3] 3R_28145327_SNP [dm6]	T	A	4.850e^-4	0.897	INTERGENIC
3R	23971060	3R_23971060_DEL [dm3] 3R_28145338_DEL [dm6]	TCCT	T	4.850e^-4	0.897	INTERGENIC
2L	15080727	2L_15080727_SNP [dm3] 2L_15080727_SNP [dm6]	G	T	4.851e^-4	0.897	INTRON CG15270
2R	17838964	2R_17838964_SNP [dm3] 2R_21951459_SNP [dm6]	A	C	4.852e^-4	0.897	UPSTREAM CG13488 INTERGENIC
X	18461471	X_18461471_SNP [dm3] X_18567438_SNP [dm6]	A	G	4.858e^-4	0.897	INTRON Bx
2R	19102543	2R_19102543_SNP [dm3] 2R_23215020_SNP [dm6]	C	A	4.859e^-4	0.897	INTERGENIC
2R	18747300	2R_18747300_SNP [dm3] 2R_22859777_SNP [dm6]	T	A	4.878e^-4	0.897	UPSTREAM inaD INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	15202284	2L_15202284_SNP [dm3] 2L_15202284_SNP [dm6]	C	G	4.884e^-4	0.897	UPSTREAM Sfp35C EXON CR43357
2L	16573709	2L_16573709_SNP [dm3] 2L_16573709_SNP [dm6]	G	A	4.887e^-4	0.897	INTRON CG42389
3R	18174326	3R_18174326_SNP [dm3] 3R_22348604_SNP [dm6]	A	T	4.891e^-4	0.897	INTERGENIC
2L	6166544	2L_6166544_SNP [dm3] 2L_6166544_SNP [dm6]	G	C	4.896e^-4	0.897	INTERGENIC
3R	25912439	3R_25912439_SNP [dm3] 3R_30086717_SNP [dm6]	T	C	4.903e^-4	0.897	INTRON sima
3R	25912440	3R_25912440_SNP [dm3] 3R_30086718_SNP [dm6]	C	G	4.903e^-4	0.897	INTRON sima
3R	10032529	3R_10032529_INS [dm3] 3R_14206807_INS [dm6]	C	TT	4.903e^-4	0.897	INTRON Dop1R1
2L	6166447	2L_6166447_SNP [dm3] 2L_6166447_SNP [dm6]	A	G	4.904e^-4	0.897	INTERGENIC
2L	6166452	2L_6166452_SNP [dm3] 2L_6166452_SNP [dm6]	C	T	4.904e^-4	0.897	INTERGENIC
2L	6417576	2L_6417576_SNP [dm3] 2L_6417576_SNP [dm6]	C	T	4.906e^-4	0.897	SYNONYMOUS_CODING Tig	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9860590	2L_9860590_SNP [dm3] 2L_9860590_SNP [dm6]	T	G	4.908e^-4	0.897	INTRON nAChRalpha6
2R	17913720	2R_17913720_SNP [dm3] 2R_22026215_SNP [dm6]	G	C	4.912e^-4	0.897	INTRON CG34370	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	17918682	2R_17918682_SNP [dm3] 2R_22031177_SNP [dm6]	T	A	4.912e^-4	0.897	INTRON CG34370
3L	21408225	3L_21408225_DEL [dm3] 3L_21415125_DEL [dm6]	CGGC	C	4.929e^-4	0.897	INTRON rgn
X	18041735	X_18041735_SNP [dm3] X_18147702_SNP [dm6]	A	C	4.949e^-4	0.897	INTERGENIC
2L	16398400	2L_16398400_SNP [dm3] 2L_16398400_SNP [dm6]	C	G	4.956e^-4	0.897	INTERGENIC
2R	6964679	2R_6964679_SNP [dm3] 2R_11077174_SNP [dm6]	G	T	4.967e^-4	0.897	INTRON luna	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24311028	3R_24311028_SNP [dm3] 3R_28485306_SNP [dm6]	T	G	4.968e^-4	0.897	NON_SYNONYMOUS_CODING CG1894	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8666046	2R_8666046_SNP [dm3] 2R_12778541_SNP [dm6]	A	C	4.971e^-4	0.897	EXON CR45266	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
X	5369623	X_5369623_SNP [dm3] X_5475590_SNP [dm6]	T	C	4.971e^-4	0.897	INTRON SPR
2L	11941257	2L_11941257_SNP [dm3] 2L_11941257_SNP [dm6]	G	A	4.987e^-4	0.897	INTERGENIC
3R	22464075	3R_22464075_SNP [dm3] 3R_26638353_SNP [dm6]	T	G	5.001e^-4	0.897	DOWNSTREAM TwdlS INTERGENIC
X	14855183	X_14855183_SNP [dm3] X_14961150_SNP [dm6]	A	T	5.002e^-4	0.897	INTRON eag	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	15905094	X_15905094_SNP [dm3] X_16011061_SNP [dm6]	G	T	5.009e^-4	0.897	SYNONYMOUS_CODING Muc14A
3R	23979576	3R_23979576_SNP [dm3] 3R_28153854_SNP [dm6]	T	C	5.011e^-4	0.897	INTRON CG34354
X	4298959	X_4298959_SNP [dm3] X_4404926_SNP [dm6]	A	T	5.021e^-4	0.897	INTRON CR32773
3L	4636405	3L_4636405_SNP [dm3] 3L_4636405_SNP [dm6]	C	T	5.028e^-4	0.897	DOWNSTREAM axo INTRON axo
2L	16639399	2L_16639399_SNP [dm3] 2L_16639399_SNP [dm6]	C	A	5.028e^-4	0.897	INTRON CG42389
3R	12143128	3R_12143128_SNP [dm3] 3R_16317406_SNP [dm6]	C	T	5.036e^-4	0.897	INTRON Sulf1
X	15989375	X_15989375_SNP [dm3] X_16095342_SNP [dm6]	G	A	5.044e^-4	0.897	SYNONYMOUS_CODING CG42354 UTR_3_PRIME CG42353	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	4807791	2R_4807791_SNP [dm3] 2R_8920286_SNP [dm6]	T	C	5.050e^-4	0.897	START_GAINED CG8248 UTR_5_PRIME CG8248 UTR_3_PRIME Spt

Missing results

By genomic position
Variant impact
Gene name

pc_FLCN_Hobo_HS phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results