DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.253e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1354 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	13789150	3R_13789150_SNP [dm3] 3R_17963428_SNP [dm6]	G	T	4.251e^-6	1	INTRON cpo
3R	21470095	3R_21470095_INS [dm3] 3R_25644373_INS [dm6]	T	TT	4.822e^-6	1	INTRON jigr1
3L	16987512	3L_16987512_SNP [dm3] 3L_16994412_SNP [dm6]	T	G	4.844e^-6	1	DOWNSTREAM CG3764 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	16987692	3L_16987692_SNP [dm3] 3L_16994592_SNP [dm6]	G	A	4.844e^-6	1	DOWNSTREAM CG3764 & 1 other INTERGENIC
3L	2105215	3L_2105215_SNP [dm3] 3L_2105215_SNP [dm6]	T	C	8.487e^-6	1	SYNONYMOUS_CODING sls	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	13120453	3L_13120453_SNP [dm3] 3L_13127353_SNP [dm6]	G	A	9.078e^-6	1	INTERGENIC
3R	17087635	3R_17087635_SNP [dm3] 3R_21261913_SNP [dm6]	G	T	9.430e^-6	1	SYNONYMOUS_CODING ETHR INTRON ETHR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17087636	3R_17087636_SNP [dm3] 3R_21261914_SNP [dm6]	C	T	9.430e^-6	1	SYNONYMOUS_CODING ETHR INTRON ETHR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3449466	2L_3449466_SNP [dm3] 2L_3449466_SNP [dm6]	C	A	1.014e^-5	1	UPSTREAM Snx1 INTERGENIC
2L	4629433	2L_4629433_SNP [dm3] 2L_4629433_SNP [dm6]	C	T	1.035e^-5	1	INTERGENIC
2L	3449465	2L_3449465_SNP [dm3] 2L_3449465_SNP [dm6]	C	A	1.151e^-5	1	UPSTREAM Snx1 INTERGENIC
2L	3449476	2L_3449476_SNP [dm3] 2L_3449476_SNP [dm6]	T	C	1.151e^-5	1	UPSTREAM Snx1 INTERGENIC
3L	15845949	3L_15845949_SNP [dm3] 3L_15852849_SNP [dm6]	T	A	1.422e^-5	1	INTRON pHCl
3R	21470229	3R_21470229_SNP [dm3] 3R_25644507_SNP [dm6]	A	T	1.454e^-5	1	INTRON jigr1
3R	10172088	3R_10172088_SNP [dm3] 3R_14346366_SNP [dm6]	A	C	1.461e^-5	1	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7653085	2R_7653085_SNP [dm3] 2R_11765580_SNP [dm6]	T	C	1.492e^-5	1	INTRON ths
3R	21470231	3R_21470231_DEL [dm3] 3R_25644509_DEL [dm6]	CCATTGC	C	1.764e^-5	1	INTRON jigr1
2L	8440838	2L_8440838_SNP [dm3] 2L_8440838_SNP [dm6]	T	C	1.937e^-5	1	SYNONYMOUS_CODING mus201
3R	21470097	3R_21470097_SNP [dm3] 3R_25644375_SNP [dm6]	T	C	2.008e^-5	1	INTRON jigr1
3R	21470112	3R_21470112_SNP [dm3] 3R_25644390_SNP [dm6]	G	A	2.008e^-5	1	INTRON jigr1
2R	17782914	2R_17782914_DEL [dm3] 2R_21895409_DEL [dm6]	TTTTCCA	T	2.095e^-5	1	INTRON Fili
3L	2105204	3L_2105204_SNP [dm3] 3L_2105204_SNP [dm6]	T	C	2.165e^-5	1	NON_SYNONYMOUS_CODING sls	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	10630319	3R_10630319_SNP [dm3] 3R_14804597_SNP [dm6]	T	A	2.392e^-5	1	UTR_3_PRIME btsz DOWNSTREAM CG14857
3R	21470083	3R_21470083_SNP [dm3] 3R_25644361_SNP [dm6]	T	C	2.582e^-5	1	INTRON jigr1
2L	4870974	2L_4870974_SNP [dm3] 2L_4870974_SNP [dm6]	C	T	2.629e^-5	1	INTRON pog	TF binding site mE1_TFBS_HSA
2L	9419310	2L_9419310_INS [dm3] 2L_9419310_INS [dm6]	T	TGTAAAAATT	2.651e^-5	1	INTRON Mco1
3L	1378772	3L_1378772_SNP [dm3] 3L_1378772_SNP [dm6]	T	A	2.810e^-5	1	INTRON Ptp61F & 1 other
X	4636883	X_4636883_SNP [dm3] X_4742850_SNP [dm6]	A	G	2.922e^-5	1	INTERGENIC
3R	17087088	3R_17087088_SNP [dm3] 3R_21261366_SNP [dm6]	A	G	2.976e^-5	1	INTRON ETHR
2R	12584720	2R_12584720_SNP [dm3] 2R_16697215_SNP [dm6]	A	T	3.015e^-5	1	INTRON CG30463
2R	12853231	2R_12853231_SNP [dm3] 2R_16965726_SNP [dm6]	C	G	3.039e^-5	1	DOWNSTREAM CR44376 INTERGENIC
3R	16195812	3R_16195812_SNP [dm3] 3R_20370090_SNP [dm6]	G	A	3.363e^-5	1	INTERGENIC
2R	16488245	2R_16488245_SNP [dm3] 2R_20600740_SNP [dm6]	A	C	3.396e^-5	1	INTRON bl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16488246	2R_16488246_SNP [dm3] 2R_20600741_SNP [dm6]	G	C	3.396e^-5	1	INTRON bl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16488247	2R_16488247_INS [dm3] 2R_20600742_INS [dm6]	C	CA	3.396e^-5	1	INTRON bl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1378797	3L_1378797_SNP [dm3] 3L_1378797_SNP [dm6]	A	G	3.451e^-5	1	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_cad
X	22047349	X_22047349_SNP [dm3] X_22645513_SNP [dm6]	T	C	3.486e^-5	1	INTERGENIC
3R	17087668	3R_17087668_SNP [dm3] 3R_21261946_SNP [dm6]	C	T	3.501e^-5	1	SYNONYMOUS_CODING ETHR INTRON ETHR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14992596	2R_14992596_SNP [dm3] 2R_19105091_SNP [dm6]	C	T	3.561e^-5	1	INTRON 5-HT1A
X	9352431	X_9352431_INS [dm3] X_9458398_INS [dm6]	A	AA	3.952e^-5	1	INTRON mgl
3L	12704184	3L_12704184_SNP [dm3] 3L_12711084_SNP [dm6]	T	A	4.092e^-5	1	DOWNSTREAM mirr INTERGENIC
2R	14992711	2R_14992711_SNP [dm3] 2R_19105206_SNP [dm6]	C	G	4.120e^-5	1	INTRON 5-HT1A
2R	18570111	2R_18570111_SNP [dm3] 2R_22682606_SNP [dm6]	A	G	4.192e^-5	1	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	8973595	3L_8973595_SNP [dm3] 3L_8980495_SNP [dm6]	T	C	4.290e^-5	1	UPSTREAM CG5644 INTERGENIC
2R	16350220	2R_16350220_DEL [dm3] 2R_20462715_DEL [dm6]	CTAG	C	4.312e^-5	1	INTRON CG12484
X	22047303	X_22047303_SNP [dm3] X_22645467_SNP [dm6]	T	A	4.496e^-5	1	INTERGENIC
X	7962865	X_7962865_MNP [dm3] X_8068832_MNP [dm6]	TCAA	GTTT	4.540e^-5	1	INTRON mys	TF binding site mE1_TFBS_cad
X	7962869	X_7962869_DEL [dm3] X_8068836_DEL [dm6]	ACGA	A	4.540e^-5	1	INTRON mys	TF binding site mE1_TFBS_cad
X	7962874	X_7962874_SNP [dm3] X_8068841_SNP [dm6]	A	C	4.540e^-5	1	INTRON mys	TF binding site mE1_TFBS_cad
3L	16783920	3L_16783920_SNP [dm3] 3L_16790820_SNP [dm6]	G	T	4.654e^-5	1	SYNONYMOUS_CODING CG9674 UTR_3_PRIME CG9674	TF binding site mE1_TFBS_cad
2L	2656061	2L_2656061_SNP [dm3] 2L_2656061_SNP [dm6]	T	C	4.663e^-5	1	SYNONYMOUS_CODING Prosbeta4R2 DOWNSTREAM Or23a
2L	11344665	2L_11344665_SNP [dm3] 2L_11344665_SNP [dm6]	C	G	4.670e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	16579808	2R_16579808_SNP [dm3] 2R_20692303_SNP [dm6]	T	C	4.723e^-5	1	UPSTREAM CG13438 EXON CR44659
2L	1316715	2L_1316715_SNP [dm3] 2L_1316715_SNP [dm6]	T	C	4.801e^-5	1	INTERGENIC
X	7962855	X_7962855_DEL [dm3] X_8068822_DEL [dm6]	AACC	A	4.829e^-5	1	INTRON mys	TF binding site mE1_TFBS_cad
X	2753652	X_2753652_SNP [dm3] X_2859619_SNP [dm6]	G	A	4.832e^-5	1	INTRON kirre
X	16529508	X_16529508_SNP [dm3] X_16635475_SNP [dm6]	A	G	4.895e^-5	1	INTRON Rok
2L	11941024	2L_11941024_SNP [dm3] 2L_11941024_SNP [dm6]	C	T	4.983e^-5	1	INTERGENIC
2L	1242374	2L_1242374_SNP [dm3] 2L_1242374_SNP [dm6]	C	A	5.069e^-5	1	UTR_3_PRIME CG5397 DOWNSTREAM CG5397	TF binding site mE1_TFBS_chinmo
3R	16195775	3R_16195775_SNP [dm3] 3R_20370053_SNP [dm6]	T	C	5.259e^-5	1	INTERGENIC
2L	13933074	2L_13933074_SNP [dm3] 2L_13933074_SNP [dm6]	A	G	5.515e^-5	1	SYNONYMOUS_CODING CG16885 INTRON Ance-3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13421269	2L_13421269_SNP [dm3] 2L_13421269_SNP [dm6]	G	A	5.582e^-5	1	DOWNSTREAM CG43850 INTRON CG42784
2L	4022929	2L_4022929_SNP [dm3] 2L_4022929_SNP [dm6]	A	T	5.792e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	8398294	2L_8398294_SNP [dm3] 2L_8398294_SNP [dm6]	T	A	5.929e^-5	1	UPSTREAM CG13386 DOWNSTREAM CG13385 INTERGENIC
X	20228672	X_20228672_SNP [dm3] X_20357645_SNP [dm6]	C	T	6.257e^-5	1	INTERGENIC
2R	12115556	2R_12115556_SNP [dm3] 2R_16228051_SNP [dm6]	G	A	6.292e^-5	1	SYNONYMOUS_CODING Tsf3 INTRON CG15706	TF binding site mE1_TFBS_chinmo
X	651588	X_651588_SNP [dm3] X_757555_SNP [dm6]	C	T	6.485e^-5	1	INTRON CG5254
X	651778	X_651778_SNP [dm3] X_757745_SNP [dm6]	C	T	6.485e^-5	1	INTRON CG5254
3R	14416083	3R_14416083_SNP [dm3] 3R_18590361_SNP [dm6]	G	A	6.556e^-5	1	SYNONYMOUS_CODING CG7694 UPSTREAM qin DOWNSTREAM fray
2L	4196788	2L_4196788_SNP [dm3] 2L_4196788_SNP [dm6]	G	T	6.600e^-5	1	UTR_5_PRIME CG3714 INTRON CG3714	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
3L	5182286	3L_5182286_SNP [dm3] 3L_5189186_SNP [dm6]	C	T	6.711e^-5	1	INTRON shep
3L	5182353	3L_5182353_SNP [dm3] 3L_5189253_SNP [dm6]	C	G	6.711e^-5	1	INTRON shep
2L	8320072	2L_8320072_SNP [dm3] 2L_8320072_SNP [dm6]	G	T	6.805e^-5	1	UPSTREAM CG7787 & 1 other INTERGENIC
2L	5966209	2L_5966209_SNP [dm3] 2L_5966209_SNP [dm6]	T	G	6.971e^-5	1	SYNONYMOUS_CODING CG13992	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2105093	3L_2105093_SNP [dm3] 3L_2105093_SNP [dm6]	G	C	6.988e^-5	1	INTRON sls	TF binding site mE1_TFBS_chinmo
2L	11224198	2L_11224198_SNP [dm3] 2L_11224198_SNP [dm6]	G	T	7.189e^-5	1	INTRON ab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	10749642	3R_10749642_SNP [dm3] 3R_14923920_SNP [dm6]	G	A	7.192e^-5	1	UPSTREAM CR45598 DOWNSTREAM Sdr INTERGENIC
X	16529504	X_16529504_SNP [dm3] X_16635471_SNP [dm6]	G	A	7.372e^-5	1	INTRON Rok
2L	5266723	2L_5266723_SNP [dm3] 2L_5266723_SNP [dm6]	A	C	7.424e^-5	1	SYNONYMOUS_CODING Cyp4ac2 DOWNSTREAM Cyp4ac1 INTRON tkv
3L	1119065	3L_1119065_SNP [dm3] 3L_1119065_SNP [dm6]	G	A	7.532e^-5	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	21127648	2R_21127648_SNP [dm3] 2R_25240125_SNP [dm6]	G	A	7.578e^-5	1	INTRON CG9380
2R	21127712	2R_21127712_SNP [dm3] 2R_25240189_SNP [dm6]	T	C	7.578e^-5	1	INTRON CG9380
2R	21127750	2R_21127750_INS [dm3] 2R_25240227_INS [dm6]	T	TAAAA	7.578e^-5	1	INTRON CG9380
2R	2371970	2R_2371970_SNP [dm3] 2R_6484465_SNP [dm6]	G	T	7.827e^-5	1	INTERGENIC	transposable element FlyBase
2L	3222027	2L_3222027_SNP [dm3] 2L_3222027_SNP [dm6]	A	G	7.885e^-5	1	INTERGENIC
2L	3449290	2L_3449290_SNP [dm3] 2L_3449290_SNP [dm6]	T	C	8.064e^-5	1	UPSTREAM Snx1 INTERGENIC
2R	11683405	2R_11683405_SNP [dm3] 2R_15795900_SNP [dm6]	C	T	8.128e^-5	1	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6855623	2L_6855623_SNP [dm3] 2L_6855623_SNP [dm6]	G	A	8.209e^-5	1	SYNONYMOUS_CODING l_2_k09022
2L	4196823	2L_4196823_SNP [dm3] 2L_4196823_SNP [dm6]	G	T	8.246e^-5	1	INTRON CG3714	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
2L	5966175	2L_5966175_SNP [dm3] 2L_5966175_SNP [dm6]	C	G	8.261e^-5	1	NON_SYNONYMOUS_CODING CG13992	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8978680	3L_8978680_SNP [dm3] 3L_8985580_SNP [dm6]	T	C	8.657e^-5	1	START_GAINED Galk UTR_5_PRIME Galk INTRON Galk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
3R	11323409	3R_11323409_SNP [dm3] 3R_15497687_SNP [dm6]	T	G	8.658e^-5	1	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	1345710	2R_1345710_SNP [dm3] 2R_5458205_SNP [dm6]	A	T	8.869e^-5	1	INTERGENIC	transposable element FlyBase
2L	12586152	2L_12586152_SNP [dm3] 2L_12586152_SNP [dm6]	A	C	8.932e^-5	1	INTERGENIC
3L	8979278	3L_8979278_SNP [dm3] 3L_8986178_SNP [dm6]	T	C	8.946e^-5	1	UPSTREAM Galk & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	11787752	3L_11787752_SNP [dm3] 3L_11794652_SNP [dm6]	G	A	8.975e^-5	1	NON_SYNONYMOUS_CODING CG10907 UPSTREAM Klp68D
2R	14992724	2R_14992724_SNP [dm3] 2R_19105219_SNP [dm6]	A	C	8.990e^-5	1	INTRON 5-HT1A
3R	21825644	3R_21825644_SNP [dm3] 3R_25999922_SNP [dm6]	G	A	9.327e^-5	1	UTR_5_PRIME E_spl_mgamma-HLH	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	18636445	X_18636445_DEL [dm3] X_18742412_DEL [dm6]	CC	C	9.585e^-5	1	INTERGENIC
2L	5266834	2L_5266834_SNP [dm3] 2L_5266834_SNP [dm6]	T	C	9.672e^-5	1	SYNONYMOUS_CODING Cyp4ac2 DOWNSTREAM Cyp4ac1 INTRON tkv
X	7970720	X_7970720_SNP [dm3] X_8076687_SNP [dm6]	A	G	9.674e^-5	1	SYNONYMOUS_CODING CG1571	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	21127762	2R_21127762_INS [dm3] 2R_25240239_INS [dm6]	T	CATACGAATGGACGGACAGG...	9.687e^-5	1	INTRON CG9380
2R	21127774	2R_21127774_MNP [dm3] 2R_25240251_MNP [dm6]	ACT	CTA	9.687e^-5	1	INTRON CG9380
3R	11870743	3R_11870743_SNP [dm3] 3R_16045021_SNP [dm6]	G	A	9.771e^-5	1	SYNONYMOUS_CODING CG10407 DOWNSTREAM CG10264
3L	10482773	3L_10482773_SNP [dm3] 3L_10489673_SNP [dm6]	G	T	9.858e^-5	1	INTRON A2bp1
3L	8976666	3L_8976666_SNP [dm3] 3L_8983566_SNP [dm6]	G	T	9.859e^-5	1	NON_SYNONYMOUS_CODING Galk DOWNSTREAM CG13314	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	11473802	3L_11473802_SNP [dm3] 3L_11480702_SNP [dm6]	T	C	9.924e^-5	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	11233155	2L_11233155_DEL [dm3] 2L_11233155_DEL [dm6]	TT	T	1.001e^-4	1	INTRON ab
2L	18732227	2L_18732227_SNP [dm3] 2L_18732227_SNP [dm6]	T	C	1.013e^-4	1	UTR_5_PRIME CG10348 UPSTREAM CG10348 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	8398469	2L_8398469_DEL [dm3] 2L_8398469_DEL [dm6]	GTTTTCGT	G	1.035e^-4	1	UPSTREAM CG13386 DOWNSTREAM CG13385 INTERGENIC
3R	17087295	3R_17087295_SNP [dm3] 3R_21261573_SNP [dm6]	C	T	1.040e^-4	1	INTRON ETHR
2R	5822548	2R_5822548_SNP [dm3] 2R_9935043_SNP [dm6]	G	C	1.053e^-4	1	INTRON Mef2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	21127752	2R_21127752_SNP [dm3] 2R_25240229_SNP [dm6]	T	C	1.058e^-4	1	INTRON CG9380
3L	13371171	3L_13371171_SNP [dm3] 3L_13378071_SNP [dm6]	T	C	1.080e^-4	1	UPSTREAM SNCF INTRON CG14111	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6754286	2L_6754286_SNP [dm3] 2L_6754286_SNP [dm6]	T	C	1.083e^-4	1	SYNONYMOUS_CODING CG11221	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14188472	3R_14188472_SNP [dm3] 3R_18362750_SNP [dm6]	G	A	1.085e^-4	1	NON_SYNONYMOUS_CODING CG7669	TF binding site mE1_TFBS_cad
2R	21127779	2R_21127779_SNP [dm3] 2R_25240256_SNP [dm6]	C	A	1.088e^-4	1	INTRON CG9380
2R	21127755	2R_21127755_DEL [dm3] 2R_25240232_DEL [dm6]	GC	G	1.090e^-4	1	INTRON CG9380
2R	21127758	2R_21127758_SNP [dm3] 2R_25240235_SNP [dm6]	A	C	1.090e^-4	1	INTRON CG9380
3R	21470117	3R_21470117_DEL [dm3] 3R_25644395_DEL [dm6]	TC	T	1.098e^-4	1	INTRON jigr1
2L	9149731	2L_9149731_SNP [dm3] 2L_9149731_SNP [dm6]	C	T	1.099e^-4	1	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18776018	2L_18776018_SNP [dm3] 2L_18776018_SNP [dm6]	T	A	1.100e^-4	1	INTRON ham	TF binding site BDTNP1_TFBS_twi
2L	5265505	2L_5265505_SNP [dm3] 2L_5265505_SNP [dm6]	A	C	1.101e^-4	1	SYNONYMOUS_CODING Cyp4ac1 UPSTREAM Cyp4ac2 INTRON tkv	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9822558	3R_9822558_SNP [dm3] 3R_13996836_SNP [dm6]	G	T	1.102e^-4	1	INTRON rdx
2R	21127771	2R_21127771_SNP [dm3] 2R_25240248_SNP [dm6]	T	A	1.115e^-4	1	INTRON CG9380
2R	21127621	2R_21127621_DEL [dm3] 2R_25240098_DEL [dm6]	ATT	C	1.116e^-4	1	INTRON CG9380
3L	2105103	3L_2105103_SNP [dm3] 3L_2105103_SNP [dm6]	A	C	1.120e^-4	1	INTRON sls	TF binding site mE1_TFBS_chinmo
3R	25065695	3R_25065695_SNP [dm3] 3R_29239973_SNP [dm6]	G	A	1.126e^-4	1	SPLICE_SITE_REGION CG31427 UTR_5_PRIME CG31427 DOWNSTREAM CG31445
2L	5265511	2L_5265511_SNP [dm3] 2L_5265511_SNP [dm6]	A	G	1.127e^-4	1	SYNONYMOUS_CODING Cyp4ac1 UPSTREAM Cyp4ac2 INTRON tkv	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1071961	3L_1071961_DEL [dm3] 3L_1071961_DEL [dm6]	GTCA	G	1.130e^-4	1	INTRON bab1
X	19800846	X_19800846_DEL [dm3] X_19906813_DEL [dm6]	TA	T	1.145e^-4	1	UTR_3_PRIME Hers DOWNSTREAM Hers	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9727916	2L_9727916_SNP [dm3] 2L_9727916_SNP [dm6]	T	A	1.172e^-4	1	INTRON Nckx30C
2L	9728018	2L_9728018_SNP [dm3] 2L_9728018_SNP [dm6]	C	T	1.172e^-4	1	INTRON Nckx30C
2L	8412941	2L_8412941_SNP [dm3] 2L_8412941_SNP [dm6]	C	T	1.174e^-4	1	UTR_3_PRIME CG13398
X	2262176	X_2262176_SNP [dm3] X_2368143_SNP [dm6]	C	T	1.189e^-4	1	UTR_3_PRIME PsGEF
X	15441448	X_15441448_INS [dm3] X_15547415_INS [dm6]	C	CC	1.192e^-4	1	UPSTREAM CR44354 INTRON Ac13E EXON CR44353
2L	3193130	2L_3193130_SNP [dm3] 2L_3193130_SNP [dm6]	G	A	1.212e^-4	1	INTRON CG34393
3R	3552976	3R_3552976_INS [dm3] 3R_7727254_INS [dm6]	T	TT	1.216e^-4	1	INTERGENIC
3L	21501348	3L_21501348_DEL [dm3] 3L_21508248_DEL [dm6]	CTG	C	1.241e^-4	1	UTR_5_PRIME M6 UPSTREAM Glg1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	1556951	3L_1556951_SNP [dm3] 3L_1556951_SNP [dm6]	A	G	1.242e^-4	1	SYNONYMOUS_CODING CG12099	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	17962897	3R_17962897_SNP [dm3] 3R_22137175_SNP [dm6]	A	C	1.262e^-4	1	INTRON SKIP
3R	17962908	3R_17962908_SNP [dm3] 3R_22137186_SNP [dm6]	G	T	1.262e^-4	1	INTRON SKIP
3R	17962923	3R_17962923_SNP [dm3] 3R_22137201_SNP [dm6]	A	C	1.262e^-4	1	INTRON SKIP
3R	17962938	3R_17962938_SNP [dm3] 3R_22137216_SNP [dm6]	A	T	1.262e^-4	1	INTRON SKIP
2L	5966176	2L_5966176_SNP [dm3] 2L_5966176_SNP [dm6]	T	A	1.266e^-4	1	SYNONYMOUS_CODING CG13992	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	2989676	2R_2989676_DEL [dm3] 2R_7102171_DEL [dm6]	CTGTTTATTTGAGATCTATA...	T	1.278e^-4	1	INTRON esn
2R	2989711	2R_2989711_SNP [dm3] 2R_7102206_SNP [dm6]	C	T	1.278e^-4	1	INTRON esn
3R	25065692	3R_25065692_SNP [dm3] 3R_29239970_SNP [dm6]	T	C	1.298e^-4	1	UTR_5_PRIME CG31427 DOWNSTREAM CG31445
2L	4022801	2L_4022801_SNP [dm3] 2L_4022801_SNP [dm6]	A	G	1.326e^-4	1	INTERGENIC
2L	19798357	2L_19798357_SNP [dm3] 2L_19798357_SNP [dm6]	A	T	1.332e^-4	1	INTRON sick
X	16930961	X_16930961_SNP [dm3] X_17036928_SNP [dm6]	G	A	1.340e^-4	1	INTRON CG45002
3R	2704481	3R_2704481_SNP [dm3] 3R_6878759_SNP [dm6]	A	C	1.342e^-4	1	INTRON CR44931	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9269478	2L_9269478_SNP [dm3] 2L_9269478_SNP [dm6]	A	G	1.344e^-4	1	INTRON Ggamma30A
2L	13951362	2L_13951362_SNP [dm3] 2L_13951362_SNP [dm6]	A	C	1.350e^-4	1	INTRON Ance-3
2L	8398189	2L_8398189_SNP [dm3] 2L_8398189_SNP [dm6]	A	G	1.355e^-4	1	UPSTREAM CG13386 DOWNSTREAM CG13385 INTERGENIC
2R	21127766	2R_21127766_SNP [dm3] 2R_25240243_SNP [dm6]	T	G	1.359e^-4	1	INTRON CG9380
2R	21127767	2R_21127767_SNP [dm3] 2R_25240244_SNP [dm6]	T	A	1.359e^-4	1	INTRON CG9380
2L	2701446	2L_2701446_SNP [dm3] 2L_2701446_SNP [dm6]	A	C	1.362e^-4	1	INTRON CG31690
2R	2372972	2R_2372972_SNP [dm3] 2R_6485467_SNP [dm6]	G	T	1.365e^-4	1	INTERGENIC	transposable element FlyBase
2L	2783086	2L_2783086_SNP [dm3] 2L_2783086_SNP [dm6]	G	A	1.368e^-4	1	SYNONYMOUS_CODING Syt1 UTR_3_PRIME Syt1
2L	9419241	2L_9419241_SNP [dm3] 2L_9419241_SNP [dm6]	T	A	1.372e^-4	1	INTRON Mco1
3L	11890951	3L_11890951_SNP [dm3] 3L_11897851_SNP [dm6]	C	G	1.404e^-4	1	UPSTREAM CR43624 INTRON CG44837
3L	1611627	3L_1611627_SNP [dm3] 3L_1611627_SNP [dm6]	G	C	1.417e^-4	1	NON_SYNONYMOUS_CODING CG12105 INTRON CG33791 & 1 other	TF binding site mE1_TFBS_chinmo
3L	11852655	3L_11852655_SNP [dm3] 3L_11859555_SNP [dm6]	A	G	1.452e^-4	1	INTRON CG44837
2R	17237869	2R_17237869_SNP [dm3] 2R_21350364_SNP [dm6]	G	C	1.467e^-4	1	SYNONYMOUS_CODING CG17974
2R	14839697	2R_14839697_INS [dm3] 2R_18952192_INS [dm6]	T	TT	1.469e^-4	1	INTRON sano
3L	6713336	3L_6713336_SNP [dm3] 3L_6720236_SNP [dm6]	G	A	1.483e^-4	1	UPSTREAM ple INTERGENIC	regulatory region REDfly_CRMs
2L	9883595	2L_9883595_SNP [dm3] 2L_9883595_SNP [dm6]	T	G	1.491e^-4	1	INTRON nAChRalpha6
2L	9883601	2L_9883601_SNP [dm3] 2L_9883601_SNP [dm6]	T	G	1.491e^-4	1	INTRON nAChRalpha6
X	650734	X_650734_SNP [dm3] X_756701_SNP [dm6]	C	T	1.507e^-4	1	INTRON CG5254
3R	2501968	3R_2501968_SNP [dm3] 3R_6676246_SNP [dm6]	G	T	1.510e^-4	1	INTRON lab	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens
2R	21056494	2R_21056494_SNP [dm3] 2R_25168971_SNP [dm6]	A	C	1.553e^-4	1	INTRON CG34038	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	3363453	2L_3363453_SNP [dm3] 2L_3363453_SNP [dm6]	T	C	1.556e^-4	1	INTRON CG34394	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8979047	3L_8979047_SNP [dm3] 3L_8985947_SNP [dm6]	C	T	1.564e^-4	1	UPSTREAM Galk & 1 other INTRON Galk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Ubx
3L	8979113	3L_8979113_SNP [dm3] 3L_8986013_SNP [dm6]	T	A	1.564e^-4	1	UTR_5_PRIME Galk UPSTREAM Galk & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	7586213	2L_7586213_SNP [dm3] 2L_7586213_SNP [dm6]	C	T	1.567e^-4	1	INTERGENIC
3L	5303669	3L_5303669_SNP [dm3] 3L_5310569_SNP [dm6]	C	T	1.568e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	2399570	X_2399570_SNP [dm3] X_2505537_SNP [dm6]	A	C	1.588e^-4	1	UTR_5_PRIME trol INTRON trol	TF binding site mE1_TFBS_cad
X	7773042	X_7773042_SNP [dm3] X_7879009_SNP [dm6]	A	G	1.594e^-4	1	UPSTREAM Ir7d DOWNSTREAM Ir7e INTERGENIC
X	7773055	X_7773055_SNP [dm3] X_7879022_SNP [dm6]	G	T	1.594e^-4	1	UPSTREAM Ir7d DOWNSTREAM Ir7e INTERGENIC
X	7773147	X_7773147_SNP [dm3] X_7879114_SNP [dm6]	T	A	1.594e^-4	1	UPSTREAM Ir7d DOWNSTREAM Ir7e INTERGENIC
2L	5965921	2L_5965921_SNP [dm3] 2L_5965921_SNP [dm6]	G	A	1.594e^-4	1	SYNONYMOUS_CODING CG13992 UPSTREAM psd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3446247	2L_3446247_SNP [dm3] 2L_3446247_SNP [dm6]	A	C	1.605e^-4	1	INTRON CG2772	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12115432	2R_12115432_SNP [dm3] 2R_16227927_SNP [dm6]	C	T	1.618e^-4	1	SYNONYMOUS_CODING Tsf3 INTRON CG15706	TF binding site mE1_TFBS_chinmo
2R	16579758	2R_16579758_SNP [dm3] 2R_20692253_SNP [dm6]	C	G	1.620e^-4	1	UPSTREAM CG13438 EXON CR44659
2L	9445716	2L_9445716_SNP [dm3] 2L_9445716_SNP [dm6]	C	G	1.654e^-4	1	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
3L	580741	3L_580741_SNP [dm3] 3L_580741_SNP [dm6]	G	C	1.678e^-4	1	UTR_3_PRIME hipk UPSTREAM Ppm1
2R	14992561	2R_14992561_SNP [dm3] 2R_19105056_SNP [dm6]	A	T	1.681e^-4	1	INTRON 5-HT1A
3R	25415302	3R_25415302_SNP [dm3] 3R_29589580_SNP [dm6]	T	C	1.686e^-4	1	SYNONYMOUS_CODING CG11470 DOWNSTREAM CG31041	TF binding site mE1_TFBS_cad
3R	11333369	3R_11333369_DEL [dm3] 3R_15507647_DEL [dm6]	CT	C	1.699e^-4	1	DOWNSTREAM CG44014 INTERGENIC
3R	14907243	3R_14907243_SNP [dm3] 3R_19081521_SNP [dm6]	T	C	1.699e^-4	1	INTRON cdi
X	7971585	X_7971585_SNP [dm3] X_8077552_SNP [dm6]	G	A	1.707e^-4	1	NON_SYNONYMOUS_CODING CG1571 DOWNSTREAM CG2254	TF binding site mE1_TFBS_cad
3L	4655189	3L_4655189_SNP [dm3] 3L_4655189_SNP [dm6]	T	A	1.710e^-4	1	INTRON axo
3L	1463145	3L_1463145_SNP [dm3] 3L_1463145_SNP [dm6]	G	A	1.719e^-4	1	UPSTREAM CR44842 & 1 other INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	3449309	2L_3449309_SNP [dm3] 2L_3449309_SNP [dm6]	C	T	1.728e^-4	1	UPSTREAM Snx1 INTERGENIC
2R	19102584	2R_19102584_SNP [dm3] 2R_23215061_SNP [dm6]	G	A	1.733e^-4	1	INTERGENIC
2L	7227972	2L_7227972_SNP [dm3] 2L_7227972_SNP [dm6]	T	C	1.749e^-4	1	SYNONYMOUS_CODING CG43799 INTRON Ndae1
2R	13760427	2R_13760427_SNP [dm3] 2R_17872922_SNP [dm6]	A	T	1.756e^-4	1	UPSTREAM Mapmodulin INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	16987702	3L_16987702_SNP [dm3] 3L_16994602_SNP [dm6]	T	G	1.763e^-4	1	DOWNSTREAM CG3764 & 1 other INTERGENIC
3L	8979555	3L_8979555_SNP [dm3] 3L_8986455_SNP [dm6]	A	C	1.775e^-4	1	UPSTREAM Galk & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Ubx
2R	2372257	2R_2372257_SNP [dm3] 2R_6484752_SNP [dm6]	T	G	1.786e^-4	1	INTERGENIC	transposable element FlyBase
2R	7805403	2R_7805403_SNP [dm3] 2R_11917898_SNP [dm6]	A	T	1.787e^-4	1	EXON CR44305	TF binding site BDTNP1_TFBS_prd
2L	19815993	2L_19815993_SNP [dm3] 2L_19815993_SNP [dm6]	T	A	1.800e^-4	1	UPSTREAM snRNA:U5:38ABb & 1 other INTRON sick	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17297656	2R_17297656_SNP [dm3] 2R_21410151_SNP [dm6]	T	C	1.801e^-4	1	INTRON Sdc
2L	8657571	2L_8657571_DEL [dm3] 2L_8657571_DEL [dm6]	CATCCTGATCCCC...	C	1.805e^-4	1	INTRON Sema-1a
3R	17962944	3R_17962944_SNP [dm3] 3R_22137222_SNP [dm6]	T	A	1.809e^-4	1	INTRON SKIP
3L	1009763	3L_1009763_SNP [dm3] 3L_1009763_SNP [dm6]	G	A	1.823e^-4	1	INTRON trio
3L	3633461	3L_3633461_SNP [dm3] 3L_3633461_SNP [dm6]	A	G	1.825e^-4	1	INTRON dar1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
X	5409261	X_5409261_SNP [dm3] X_5515228_SNP [dm6]	T	G	1.828e^-4	1	INTERGENIC
X	13346811	X_13346811_SNP [dm3] X_13452778_SNP [dm6]	A	T	1.854e^-4	1	INTRON Neto
3L	11787840	3L_11787840_SNP [dm3] 3L_11794740_SNP [dm6]	G	A	1.865e^-4	1	SPLICE_SITE_REGION CG10907 UPSTREAM Klp68D INTRON CG10907
3L	11787868	3L_11787868_SNP [dm3] 3L_11794768_SNP [dm6]	T	A	1.865e^-4	1	UPSTREAM Klp68D INTRON CG10907
2L	18816224	2L_18816224_SNP [dm3] 2L_18816224_SNP [dm6]	T	A	1.883e^-4	1	INTERGENIC
X	5445484	X_5445484_SNP [dm3] X_5551451_SNP [dm6]	G	A	1.910e^-4	1	INTRON Vsx2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	19352661	3R_19352661_SNP [dm3] 3R_23526939_SNP [dm6]	A	G	1.936e^-4	1	SYNONYMOUS_CODING CG10175 INTRON CG10175
3R	2704526	3R_2704526_SNP [dm3] 3R_6878804_SNP [dm6]	T	A	1.939e^-4	1	INTRON CR44931	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16997387	3L_16997387_INS [dm3] 3L_17004287_INS [dm6]	G	GTTTTACAAATATAATTGTC...	1.940e^-4	1	INTRON CG3764	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	16997394	3L_16997394_SNP [dm3] 3L_17004294_SNP [dm6]	C	A	1.940e^-4	1	INTRON CG3764	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	16997407	3L_16997407_SNP [dm3] 3L_17004307_SNP [dm6]	G	A	1.940e^-4	1	INTRON CG3764	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	5437086	3L_5437086_SNP [dm3] 3L_5443986_SNP [dm6]	G	T	1.978e^-4	1	INTERGENIC
X	13749990	X_13749990_SNP [dm3] X_13855957_SNP [dm6]	T	C	1.994e^-4	1	NON_SYNONYMOUS_CODING mamo	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	21127811	2R_21127811_SNP [dm3] 2R_25240288_SNP [dm6]	T	C	2.015e^-4	1	INTRON CG9380
2R	7693626	2R_7693626_SNP [dm3] 2R_11806121_SNP [dm6]	T	A	2.030e^-4	1	INTRON ths
2L	3443716	2L_3443716_SNP [dm3] 2L_3443716_SNP [dm6]	A	G	2.043e^-4	1	INTERGENIC
2R	21127792	2R_21127792_MNP [dm3] 2R_25240269_MNP [dm6]	GGG	ATA	2.047e^-4	1	INTRON CG9380
2L	11858779	2L_11858779_SNP [dm3] 2L_11858779_SNP [dm6]	T	A	2.053e^-4	1	INTRON Pde1c
3R	13043802	3R_13043802_SNP [dm3] 3R_17218080_SNP [dm6]	T	G	2.069e^-4	1	INTRON CG31262
3R	13043804	3R_13043804_SNP [dm3] 3R_17218082_SNP [dm6]	C	A	2.069e^-4	1	INTRON CG31262
3R	13043808	3R_13043808_SNP [dm3] 3R_17218086_SNP [dm6]	G	A	2.069e^-4	1	INTRON CG31262
3L	1688874	3L_1688874_DEL [dm3] 3L_1688874_DEL [dm6]	CC	C	2.071e^-4	1	UTR_5_PRIME CG7991 INTRON CG7991	TF binding site BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
X	12653702	X_12653702_SNP [dm3] X_12759669_SNP [dm6]	A	T	2.080e^-4	1	DOWNSTREAM CG12717 INTRON ade5	TF binding site mE1_TFBS_inv
3R	25399430	3R_25399430_SNP [dm3] 3R_29573708_SNP [dm6]	G	A	2.090e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	1325042	2R_1325042_SNP [dm3] 2R_5437537_SNP [dm6]	C	A	2.097e^-4	1	INTRON laccase2	transposable element FlyBase
3L	11527364	3L_11527364_SNP [dm3] 3L_11534264_SNP [dm6]	C	T	2.097e^-4	1	INTRON Mob2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	11658027	2L_11658027_SNP [dm3] 2L_11658027_SNP [dm6]	G	A	2.098e^-4	1	DOWNSTREAM CG43167 INTERGENIC
3R	25364281	3R_25364281_SNP [dm3] 3R_29538559_SNP [dm6]	C	A	2.108e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	21127784	2R_21127784_INS [dm3] 2R_25240261_INS [dm6]	T	TGATCAAG	2.115e^-4	1	INTRON CG9380
3L	19046709	3L_19046709_INS [dm3] 3L_19053609_INS [dm6]	A	AGAAAAC	2.118e^-4	1	UPSTREAM CG43407 DOWNSTREAM CR44675 INTERGENIC
3L	19046711	3L_19046711_DEL [dm3] 3L_19053611_DEL [dm6]	AG	A	2.118e^-4	1	UPSTREAM CG43407 DOWNSTREAM CR44675 INTERGENIC
3L	13191838	3L_13191838_SNP [dm3] 3L_13198738_SNP [dm6]	G	T	2.120e^-4	1	INTERGENIC
3R	11333141	3R_11333141_SNP [dm3] 3R_15507419_SNP [dm6]	G	A	2.134e^-4	1	DOWNSTREAM CG44014 INTERGENIC
3R	6298786	3R_6298786_SNP [dm3] 3R_10473064_SNP [dm6]	C	A	2.134e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	10749328	3R_10749328_SNP [dm3] 3R_14923606_SNP [dm6]	C	T	2.151e^-4	1	DOWNSTREAM Sdr EXON CR45598
X	15393250	X_15393250_SNP [dm3] X_15499217_SNP [dm6]	T	A	2.158e^-4	1	UTR_5_PRIME Gmap INTRON Gmap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13789143	3R_13789143_SNP [dm3] 3R_17963421_SNP [dm6]	G	A	2.175e^-4	1	INTRON cpo
3R	5838704	3R_5838704_SNP [dm3] 3R_10012982_SNP [dm6]	G	C	2.182e^-4	1	SYNONYMOUS_CODING Mical INTRON Mical
2R	15988286	2R_15988286_SNP [dm3] 2R_20100781_SNP [dm6]	G	A	2.193e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14212393	X_14212393_SNP [dm3] X_14318360_SNP [dm6]	T	A	2.203e^-4	1	INTERGENIC
2L	3443810	2L_3443810_SNP [dm3] 2L_3443810_SNP [dm6]	G	T	2.214e^-4	1	INTERGENIC
3R	14416053	3R_14416053_SNP [dm3] 3R_18590331_SNP [dm6]	T	C	2.221e^-4	1	SYNONYMOUS_CODING CG7694 UPSTREAM qin DOWNSTREAM fray
2L	6787659	2L_6787659_SNP [dm3] 2L_6787659_SNP [dm6]	T	C	2.236e^-4	1	UPSTREAM nrv1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	3193269	2L_3193269_SNP [dm3] 2L_3193269_SNP [dm6]	G	A	2.243e^-4	1	INTRON CG34393
3R	18808273	3R_18808273_DEL [dm3] 3R_22982551_DEL [dm6]	ATGGGAA	A	2.247e^-4	1	INTRON Nha2
X	17665693	X_17665693_SNP [dm3] X_17771660_SNP [dm6]	A	G	2.264e^-4	1	INTRON unc-4
X	17665709	X_17665709_SNP [dm3] X_17771676_SNP [dm6]	T	C	2.264e^-4	1	INTRON unc-4
2L	9883484	2L_9883484_SNP [dm3] 2L_9883484_SNP [dm6]	T	G	2.265e^-4	1	INTRON nAChRalpha6
2L	2024716	2L_2024716_SNP [dm3] 2L_2024716_SNP [dm6]	A	T	2.276e^-4	1	INTRON CG4238
X	3435480	X_3435480_SNP [dm3] X_3541447_SNP [dm6]	A	G	2.277e^-4	1	INTRON CG32791
2R	12617616	2R_12617616_DEL [dm3] 2R_16730111_DEL [dm6]	CCCTCGTCAAGTACGAC...	C	2.278e^-4	1	INTRON CG30463	TF binding site BDTNP1_TFBS_dl
2L	13143997	2L_13143997_SNP [dm3] 2L_13143997_SNP [dm6]	T	A	2.279e^-4	1	UPSTREAM CG16978 INTERGENIC
2L	11858701	2L_11858701_SNP [dm3] 2L_11858701_SNP [dm6]	C	T	2.286e^-4	1	INTRON Pde1c
2L	11858722	2L_11858722_SNP [dm3] 2L_11858722_SNP [dm6]	A	G	2.286e^-4	1	INTRON Pde1c
2L	11858758	2L_11858758_SNP [dm3] 2L_11858758_SNP [dm6]	T	A	2.286e^-4	1	INTRON Pde1c
2L	7304627	2L_7304627_SNP [dm3] 2L_7304627_SNP [dm6]	C	T	2.297e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1919237	3L_1919237_DEL [dm3] 3L_1919237_DEL [dm6]	TTTGATTTCT	T	2.298e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	1687960	3L_1687960_SNP [dm3] 3L_1687960_SNP [dm6]	C	T	2.317e^-4	1	UPSTREAM CG7991 INTRON CG7991
X	8709413	X_8709413_SNP [dm3] X_8815380_SNP [dm6]	C	T	2.323e^-4	1	INTERGENIC
3R	11303667	3R_11303667_SNP [dm3] 3R_15477945_SNP [dm6]	A	T	2.359e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	14687982	3R_14687982_SNP [dm3] 3R_18862260_SNP [dm6]	T	G	2.364e^-4	1	INTERGENIC
2L	10053453	2L_10053453_SNP [dm3] 2L_10053453_SNP [dm6]	G	T	2.365e^-4	1	UPSTREAM CR44875 & 1 other INTERGENIC
X	18947701	X_18947701_SNP [dm3] X_19053668_SNP [dm6]	A	T	2.381e^-4	1	DOWNSTREAM Diedel3 INTERGENIC
X	18947703	X_18947703_SNP [dm3] X_19053670_SNP [dm6]	G	T	2.381e^-4	1	DOWNSTREAM Diedel3 INTERGENIC
2R	5017256	2R_5017256_SNP [dm3] 2R_9129751_SNP [dm6]	T	A	2.382e^-4	1	INTRON CG18659
3L	19963001	3L_19963001_SNP [dm3] 3L_19969901_SNP [dm6]	C	G	2.395e^-4	1	INTRON Ac76E
2L	4193746	2L_4193746_SNP [dm3] 2L_4193746_SNP [dm6]	C	A	2.396e^-4	1	INTRON CG3714	TF binding site mE1_TFBS_h mE1_TFBS_HSA
2R	17427710	2R_17427710_SNP [dm3] 2R_21540205_SNP [dm6]	G	A	2.419e^-4	1	UPSTREAM CG33226 INTRON Egfr & 1 other	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2R	21127790	2R_21127790_SNP [dm3] 2R_25240267_SNP [dm6]	T	A	2.423e^-4	1	INTRON CG9380
2R	19320568	2R_19320568_SNP [dm3] 2R_23433045_SNP [dm6]	G	A	2.433e^-4	1	INTRON CG9815
3L	1557059	3L_1557059_SNP [dm3] 3L_1557059_SNP [dm6]	A	G	2.439e^-4	1	SYNONYMOUS_CODING CG12099	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	21127812	2R_21127812_SNP [dm3] 2R_25240289_SNP [dm6]	G	T	2.458e^-4	1	INTRON CG9380
2L	10417109	2L_10417109_SNP [dm3] 2L_10417109_SNP [dm6]	C	T	2.460e^-4	1	SYNONYMOUS_CODING Klp31E	TF binding site BDTNP1_TFBS_twi
2R	12044725	2R_12044725_SNP [dm3] 2R_16157220_SNP [dm6]	C	T	2.472e^-4	1	DOWNSTREAM CG10734 INTRON lbk	TF binding site BDTNP1_TFBS_prd
2R	21127799	2R_21127799_INS [dm3] 2R_25240276_INS [dm6]	A	ATAT	2.473e^-4	1	INTRON CG9380
2R	21127803	2R_21127803_SNP [dm3] 2R_25240280_SNP [dm6]	T	C	2.473e^-4	1	INTRON CG9380
2R	21127806	2R_21127806_SNP [dm3] 2R_25240283_SNP [dm6]	G	A	2.473e^-4	1	INTRON CG9380
2L	6763916	2L_6763916_SNP [dm3] 2L_6763916_SNP [dm6]	T	A	2.480e^-4	1	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	13042382	2R_13042382_SNP [dm3] 2R_17154877_SNP [dm6]	A	C	2.480e^-4	1	SYNONYMOUS_CODING CG17290
3R	15298313	3R_15298313_SNP [dm3] 3R_19472591_SNP [dm6]	G	T	2.483e^-4	1	INTRON Dys	TF binding site mE1_TFBS_cad
2L	5965924	2L_5965924_SNP [dm3] 2L_5965924_SNP [dm6]	A	G	2.493e^-4	1	SYNONYMOUS_CODING CG13992 UPSTREAM psd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7304674	2L_7304674_SNP [dm3] 2L_7304674_SNP [dm6]	A	C	2.504e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	13379923	X_13379923_SNP [dm3] X_13485890_SNP [dm6]	T	C	2.512e^-4	1	INTRON Neto
2R	7653572	2R_7653572_SNP [dm3] 2R_11766067_SNP [dm6]	G	C	2.515e^-4	1	INTRON ths
X	12653709	X_12653709_SNP [dm3] X_12759676_SNP [dm6]	T	C	2.522e^-4	1	DOWNSTREAM CG12717 INTRON ade5	TF binding site mE1_TFBS_inv
X	19922899	X_19922899_SNP [dm3] X_20028866_SNP [dm6]	A	C	2.529e^-4	1	START_LOST Dop2R	TF binding site mE1_TFBS_chinmo
2R	14387464	2R_14387464_SNP [dm3] 2R_18499959_SNP [dm6]	T	G	2.531e^-4	1	INTERGENIC
2L	10096530	2L_10096530_SNP [dm3] 2L_10096530_SNP [dm6]	C	T	2.536e^-4	1	INTRON CG44153 & 1 other
2L	1441522	2L_1441522_SNP [dm3] 2L_1441522_SNP [dm6]	G	A	2.545e^-4	1	INTERGENIC
3R	26094233	3R_26094233_SNP [dm3] 3R_30268511_SNP [dm6]	C	G	2.554e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	17105266	2R_17105266_SNP [dm3] 2R_21217761_SNP [dm6]	A	G	2.557e^-4	1	UTR_5_PRIME CG15661 DOWNSTREAM ASPP
X	5760072	X_5760072_SNP [dm3] X_5866039_SNP [dm6]	T	C	2.558e^-4	1	UPSTREAM CG43137 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11788044	3L_11788044_SNP [dm3] 3L_11794944_SNP [dm6]	T	C	2.566e^-4	1	SYNONYMOUS_CODING CG10907 UPSTREAM Klp68D
3L	2105272	3L_2105272_SNP [dm3] 3L_2105272_SNP [dm6]	G	T	2.573e^-4	1	SYNONYMOUS_CODING sls	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	6704386	3L_6704386_SNP [dm3] 3L_6711286_SNP [dm6]	T	C	2.589e^-4	1	INTERGENIC
2L	6535619	2L_6535619_SNP [dm3] 2L_6535619_SNP [dm6]	C	T	2.591e^-4	1	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	21127783	2R_21127783_SNP [dm3] 2R_25240260_SNP [dm6]	A	C	2.596e^-4	1	INTRON CG9380
2R	14992543	2R_14992543_SNP [dm3] 2R_19105038_SNP [dm6]	G	A	2.622e^-4	1	INTRON 5-HT1A
2R	21127769	2R_21127769_INS [dm3] 2R_25240246_INS [dm6]	C	CGAC	2.623e^-4	1	INTRON CG9380
X	7291115	X_7291115_SNP [dm3] X_7397082_SNP [dm6]	G	A	2.624e^-4	1	INTRON CG1677 & 1 other
2R	14387729	2R_14387729_SNP [dm3] 2R_18500224_SNP [dm6]	G	A	2.629e^-4	1	INTERGENIC
2R	14387752	2R_14387752_SNP [dm3] 2R_18500247_SNP [dm6]	A	G	2.629e^-4	1	INTERGENIC
2R	14387753	2R_14387753_SNP [dm3] 2R_18500248_SNP [dm6]	G	C	2.629e^-4	1	INTERGENIC
2R	14387760	2R_14387760_SNP [dm3] 2R_18500255_SNP [dm6]	T	C	2.629e^-4	1	INTERGENIC
2R	14387780	2R_14387780_SNP [dm3] 2R_18500275_SNP [dm6]	G	A	2.629e^-4	1	INTERGENIC
2R	12476866	2R_12476866_SNP [dm3] 2R_16589361_SNP [dm6]	T	C	2.633e^-4	1	UPSTREAM CG8311 DOWNSTREAM CG8306 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	14905267	2R_14905267_SNP [dm3] 2R_19017762_SNP [dm6]	T	G	2.634e^-4	1	INTERGENIC
2L	10802864	2L_10802864_SNP [dm3] 2L_10802864_SNP [dm6]	C	A	2.638e^-4	1	UPSTREAM CR44581 INTERGENIC	TF binding site mE1_TFBS_inv
2L	10803371	2L_10803371_SNP [dm3] 2L_10803371_SNP [dm6]	G	C	2.638e^-4	1	UPSTREAM CR44581 DOWNSTREAM Nos INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	10804491	2L_10804491_SNP [dm3] 2L_10804491_SNP [dm6]	C	A	2.638e^-4	1	UTR_3_PRIME Nos
2L	10804552	2L_10804552_SNP [dm3] 2L_10804552_SNP [dm6]	G	A	2.638e^-4	1	SYNONYMOUS_CODING Nos UTR_3_PRIME Nos
2R	14512309	2R_14512309_SNP [dm3] 2R_18624804_SNP [dm6]	T	C	2.639e^-4	1	SYNONYMOUS_CODING Atg7 UPSTREAM Sec6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	3588134	3R_3588134_SNP [dm3] 3R_7762412_SNP [dm6]	A	G	2.639e^-4	1	INTRON Sp7
2R	18916755	2R_18916755_SNP [dm3] 2R_23029232_SNP [dm6]	G	A	2.640e^-4	1	INTRON twi & 1 other
2R	18916840	2R_18916840_SNP [dm3] 2R_23029317_SNP [dm6]	T	G	2.640e^-4	1	INTRON twi & 1 other
2R	18916908	2R_18916908_SNP [dm3] 2R_23029385_SNP [dm6]	A	G	2.640e^-4	1	INTRON twi & 1 other
X	17208404	X_17208404_SNP [dm3] X_17314371_SNP [dm6]	G	A	2.641e^-4	1	UPSTREAM B-H2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5265539	2L_5265539_SNP [dm3] 2L_5265539_SNP [dm6]	C	G	2.643e^-4	1	NON_SYNONYMOUS_CODING Cyp4ac1 UPSTREAM Cyp4ac2 INTRON tkv	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10417091	2L_10417091_SNP [dm3] 2L_10417091_SNP [dm6]	C	A	2.645e^-4	1	SYNONYMOUS_CODING Klp31E	TF binding site BDTNP1_TFBS_twi
2R	2430161	2R_2430161_SNP [dm3] 2R_6542656_SNP [dm6]	C	A	2.650e^-4	1	INTRON jing	TF binding site mE1_TFBS_chinmo
3R	14907240	3R_14907240_SNP [dm3] 3R_19081518_SNP [dm6]	C	A	2.671e^-4	1	INTRON cdi
2R	18024889	2R_18024889_SNP [dm3] 2R_22137384_SNP [dm6]	T	G	2.673e^-4	1	UPSTREAM a INTRON a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
X	22056550	X_22056550_SNP [dm3] X_22654714_SNP [dm6]	G	A	2.706e^-4	1	INTERGENIC
3R	16195611	3R_16195611_SNP [dm3] 3R_20369889_SNP [dm6]	A	G	2.713e^-4	1	INTERGENIC
2L	751274	2L_751274_SNP [dm3] 2L_751274_SNP [dm6]	A	T	2.718e^-4	1	INTRON GABA-B-R3
2L	6589439	2L_6589439_SNP [dm3] 2L_6589439_SNP [dm6]	T	C	2.724e^-4	1	INTRON CG11319
3R	5847785	3R_5847785_SNP [dm3] 3R_10022063_SNP [dm6]	A	G	2.728e^-4	1	UPSTREAM Mical DOWNSTREAM CG31407 INTRON Mical	TF binding site mE1_TFBS_inv
X	13988861	X_13988861_SNP [dm3] X_14094828_SNP [dm6]	C	A	2.738e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	14387769	2R_14387769_SNP [dm3] 2R_18500264_SNP [dm6]	G	T	2.742e^-4	1	INTERGENIC
3R	7112774	3R_7112774_SNP [dm3] 3R_11287052_SNP [dm6]	T	C	2.747e^-4	1	INTRON CR31386
2L	1273938	2L_1273938_SNP [dm3] 2L_1273938_SNP [dm6]	G	A	2.749e^-4	1	INTRON robo3
2L	13421297	2L_13421297_SNP [dm3] 2L_13421297_SNP [dm6]	T	G	2.766e^-4	1	DOWNSTREAM CG43850 INTRON CG42784
2R	2412144	2R_2412144_SNP [dm3] 2R_6524639_SNP [dm6]	G	A	2.768e^-4	1	INTRON jing	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_sens
2R	11682796	2R_11682796_SNP [dm3] 2R_15795291_SNP [dm6]	T	A	2.778e^-4	1	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5222730	X_5222730_SNP [dm3] X_5328697_SNP [dm6]	A	G	2.779e^-4	1	SYNONYMOUS_CODING CG3309	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14511670	2R_14511670_SNP [dm3] 2R_18624165_SNP [dm6]	A	C	2.782e^-4	1	INTRON Atg7
2L	13114940	2L_13114940_SNP [dm3] 2L_13114940_SNP [dm6]	G	A	2.786e^-4	1	INTERGENIC
3L	5056602	3L_5056602_SNP [dm3] 3L_5056602_SNP [dm6]	G	A	2.794e^-4	1	INTRON Con
3L	5056610	3L_5056610_SNP [dm3] 3L_5056610_SNP [dm6]	C	A	2.794e^-4	1	INTRON Con
3L	10450411	3L_10450411_SNP [dm3] 3L_10457311_SNP [dm6]	T	A	2.810e^-4	1	INTERGENIC
3L	9427364	3L_9427364_SNP [dm3] 3L_9434264_SNP [dm6]	G	C	2.812e^-4	1	UTR_3_PRIME CG42526 INTRON MTF-1
3R	10749752	3R_10749752_SNP [dm3] 3R_14924030_SNP [dm6]	T	C	2.819e^-4	1	UPSTREAM CR45598 DOWNSTREAM Sdr INTERGENIC
X	6545514	X_6545514_DEL [dm3] X_6651481_DEL [dm6]	CAC	C	2.824e^-4	1	UTR_3_PRIME pigs
2R	1345711	2R_1345711_SNP [dm3] 2R_5458206_SNP [dm6]	C	T	2.834e^-4	1	INTERGENIC	transposable element FlyBase
3R	17284901	3R_17284901_SNP [dm3] 3R_21459179_SNP [dm6]	C	T	2.834e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1345699	2R_1345699_SNP [dm3] 2R_5458194_SNP [dm6]	A	G	2.839e^-4	1	INTERGENIC	transposable element FlyBase
X	4793037	X_4793037_SNP [dm3] X_4899004_SNP [dm6]	G	T	2.852e^-4	1	INTRON CG42594
X	4793040	X_4793040_SNP [dm3] X_4899007_SNP [dm6]	T	C	2.852e^-4	1	INTRON CG42594
3L	15942334	3L_15942334_SNP [dm3] 3L_15949234_SNP [dm6]	A	G	2.853e^-4	1	INTRON Pka-C3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	11944812	2L_11944812_SNP [dm3] 2L_11944812_SNP [dm6]	C	A	2.858e^-4	1	INTRON Cry	TF binding site mE1_TFBS_cad
2L	5965903	2L_5965903_SNP [dm3] 2L_5965903_SNP [dm6]	G	A	2.860e^-4	1	SYNONYMOUS_CODING CG13992 UPSTREAM psd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5266804	2L_5266804_SNP [dm3] 2L_5266804_SNP [dm6]	C	T	2.864e^-4	1	SYNONYMOUS_CODING Cyp4ac2 DOWNSTREAM Cyp4ac1 INTRON tkv
2R	17434979	2R_17434979_SNP [dm3] 2R_21547474_SNP [dm6]	G	A	2.892e^-4	1	UTR_5_PRIME Egfr INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	2026221	2L_2026221_SNP [dm3] 2L_2026221_SNP [dm6]	A	G	2.909e^-4	1	INTRON CG4238
3L	4142520	3L_4142520_SNP [dm3] 3L_4142520_SNP [dm6]	C	A	2.928e^-4	1	UPSTREAM CG32260 DOWNSTREAM Akh INTRON CG32260
3R	18349558	3R_18349558_SNP [dm3] 3R_22523836_SNP [dm6]	T	G	2.928e^-4	1	INTRON CG5346
2L	10346156	2L_10346156_SNP [dm3] 2L_10346156_SNP [dm6]	T	C	2.930e^-4	1	SYNONYMOUS_CODING CG5022
2L	11601138	2L_11601138_SNP [dm3] 2L_11601138_SNP [dm6]	A	G	2.932e^-4	1	INTRON kek2
3L	2352243	3L_2352243_SNP [dm3] 3L_2352243_SNP [dm6]	C	T	2.943e^-4	1	INTERGENIC
2L	15499754	2L_15499754_SNP [dm3] 2L_15499754_SNP [dm6]	C	T	2.950e^-4	1	INTRON lace	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	20227806	X_20227806_SNP [dm3] X_20356779_SNP [dm6]	G	A	2.961e^-4	1	INTERGENIC
3L	4269995	3L_4269995_SNP [dm3] 3L_4269995_SNP [dm6]	G	T	2.964e^-4	1	INTRON CG1273	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	21025333	2R_21025333_SNP [dm3] 2R_25137810_SNP [dm6]	A	C	2.969e^-4	1	DOWNSTREAM CG43106 INTRON lov
2L	2701445	2L_2701445_SNP [dm3] 2L_2701445_SNP [dm6]	A	G	2.981e^-4	1	INTRON CG31690
X	657373	X_657373_SNP [dm3] X_763340_SNP [dm6]	G	C	2.991e^-4	1	UPSTREAM snoRNA:Psi18S-531 DOWNSTREAM CR44965 & 1 other INTRON CR42491 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	11331146	2L_11331146_SNP [dm3] 2L_11331146_SNP [dm6]	T	C	3.012e^-4	1	DOWNSTREAM CR44584 INTERGENIC
3L	11026439	3L_11026439_SNP [dm3] 3L_11033339_SNP [dm6]	C	T	3.013e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1316629	2L_1316629_SNP [dm3] 2L_1316629_SNP [dm6]	A	T	3.032e^-4	1	INTERGENIC
2R	14242602	2R_14242602_INS [dm3] 2R_18355097_INS [dm6]	A	AA	3.035e^-4	1	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	16987487	3L_16987487_DEL [dm3] 3L_16994387_DEL [dm6]	ACAAGAAACAGAA...	A	3.040e^-4	1	UTR_3_PRIME Exn DOWNSTREAM CG3764 & 1 other INTRAGENIC Exn INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	11871676	3R_11871676_SNP [dm3] 3R_16045954_SNP [dm6]	T	C	3.047e^-4	1	UTR_5_PRIME CG10407 DOWNSTREAM ird5
3R	11871714	3R_11871714_SNP [dm3] 3R_16045992_SNP [dm6]	T	C	3.047e^-4	1	UTR_5_PRIME CG10407 UPSTREAM CG10407 DOWNSTREAM ird5
3L	8974389	3L_8974389_DEL [dm3] 3L_8981289_DEL [dm6]	GCGATGAATAATCTT...	G	3.056e^-4	1	UPSTREAM CG13314 DOWNSTREAM Galk INTERGENIC
3R	2703903	3R_2703903_SNP [dm3] 3R_6878181_SNP [dm6]	A	G	3.065e^-4	1	INTRON CR44931	regulatory region FlyBase REDfly_CRMs
2R	15757676	2R_15757676_SNP [dm3] 2R_19870171_SNP [dm6]	G	A	3.075e^-4	1	DOWNSTREAM CR44460 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_inv mE1_TFBS_sens
2R	15757677	2R_15757677_SNP [dm3] 2R_19870172_SNP [dm6]	T	C	3.075e^-4	1	DOWNSTREAM CR44460 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_inv mE1_TFBS_sens
2R	15757679	2R_15757679_INS [dm3] 2R_19870174_INS [dm6]	T	TCC	3.075e^-4	1	DOWNSTREAM CR44460 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_inv mE1_TFBS_sens
3L	4060579	3L_4060579_SNP [dm3] 3L_4060579_SNP [dm6]	C	A	3.084e^-4	1	NON_SYNONYMOUS_CODING CG18869 SPLICE_SITE_REGION CG18869 DOWNSTREAM CG1136	TF binding site mE1_TFBS_sens
3R	26705950	3R_26705950_SNP [dm3] 3R_30880228_SNP [dm6]	G	T	3.101e^-4	1	INTRON CG12071
X	2399609	X_2399609_SNP [dm3] X_2505576_SNP [dm6]	T	G	3.117e^-4	1	UPSTREAM trol INTRON trol	TF binding site mE1_TFBS_cad
3L	11852579	3L_11852579_DEL [dm3] 3L_11859479_DEL [dm6]	CGTAATCAGC	C	3.119e^-4	1	INTRON CG44837
2L	10471050	2L_10471050_SNP [dm3] 2L_10471050_SNP [dm6]	T	C	3.128e^-4	1	INTRON RluA-1
X	18287782	X_18287782_DEL [dm3] X_18393749_DEL [dm6]	CC	C	3.137e^-4	1	INTRON CG32549
2L	13258056	2L_13258056_SNP [dm3] 2L_13258056_SNP [dm6]	T	A	3.158e^-4	1	NON_SYNONYMOUS_CODING CG31851 DOWNSTREAM CG31728
2L	11912461	2L_11912461_SNP [dm3] 2L_11912461_SNP [dm6]	A	C	3.163e^-4	1	INTRON Pde1c
2R	11686070	2R_11686070_DEL [dm3] 2R_15798565_DEL [dm6]	GA	G	3.164e^-4	1	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	7962837	X_7962837_SNP [dm3] X_8068804_SNP [dm6]	T	C	3.168e^-4	1	INTRON mys	TF binding site mE1_TFBS_cad
X	22186484	X_22186484_INS [dm3] X_22784648_INS [dm6]	T	TTTATTTATAT...	3.170e^-4	1	INTRON CR44997	transposable element FlyBase
3R	17779292	3R_17779292_SNP [dm3] 3R_21953570_SNP [dm6]	C	G	3.172e^-4	1	INTRON Eip93F
3L	18581182	3L_18581182_DEL [dm3] 3L_18588082_DEL [dm6]	GA	G	3.180e^-4	1	UPSTREAM CG7271 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25125892	3R_25125892_SNP [dm3] 3R_29300170_SNP [dm6]	A	T	3.219e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	11011039	3L_11011039_SNP [dm3] 3L_11017939_SNP [dm6]	A	C	3.224e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	13948550	2R_13948550_SNP [dm3] 2R_18061045_SNP [dm6]	G	T	3.225e^-4	1	INTERGENIC
3R	11870448	3R_11870448_SNP [dm3] 3R_16044726_SNP [dm6]	A	T	3.226e^-4	1	UTR_3_PRIME CG10264 DOWNSTREAM CG10407
2R	18571606	2R_18571606_SNP [dm3] 2R_22684101_SNP [dm6]	G	A	3.252e^-4	1	DOWNSTREAM ppa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9269473	2L_9269473_SNP [dm3] 2L_9269473_SNP [dm6]	T	C	3.283e^-4	1	INTRON Ggamma30A
3L	10450419	3L_10450419_SNP [dm3] 3L_10457319_SNP [dm6]	G	A	3.298e^-4	1	INTERGENIC
2R	17052058	2R_17052058_SNP [dm3] 2R_21164553_SNP [dm6]	A	G	3.308e^-4	1	SYNONYMOUS_CODING CG4266 UTR_3_PRIME CG4266	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	18160720	3R_18160720_SNP [dm3] 3R_22334998_SNP [dm6]	G	A	3.325e^-4	1	UPSTREAM CG5391 INTRON CG5388
2R	16336696	2R_16336696_SNP [dm3] 2R_20449191_SNP [dm6]	G	C	3.325e^-4	1	INTRON CG12484	TF binding site mE1_TFBS_inv
3R	6372228	3R_6372228_DEL [dm3] 3R_10546506_DEL [dm6]	CACACAC	C	3.327e^-4	1	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6429387	X_6429387_SNP [dm3] X_6535354_SNP [dm6]	G	A	3.328e^-4	1	INTRON dx	TF binding site BDTNP1_TFBS_dl
X	6429417	X_6429417_SNP [dm3] X_6535384_SNP [dm6]	T	C	3.328e^-4	1	INTRON dx	TF binding site BDTNP1_TFBS_dl
3L	2841207	3L_2841207_INS [dm3] 3L_2841207_INS [dm6]	T	TT	3.332e^-4	1	INTRON CG43444
3L	18062663	3L_18062663_SNP [dm3] 3L_18069563_SNP [dm6]	T	G	3.363e^-4	1	DOWNSTREAM CG44005 INTRON CG44006
2L	13087999	2L_13087999_SNP [dm3] 2L_13087999_SNP [dm6]	A	G	3.377e^-4	1	INTERGENIC
2R	21127802	2R_21127802_SNP [dm3] 2R_25240279_SNP [dm6]	G	C	3.390e^-4	1	INTRON CG9380
X	4467609	X_4467609_SNP [dm3] X_4573576_SNP [dm6]	T	A	3.392e^-4	1	INTRON CR32773	TF binding site BDTNP1_TFBS_dl
2R	18360309	2R_18360309_INS [dm3] 2R_22472804_INS [dm6]	A	AA	3.397e^-4	1	UTR_3_PRIME CG10384 DOWNSTREAM CG45062
2L	9070908	2L_9070908_SNP [dm3] 2L_9070908_SNP [dm6]	C	T	3.397e^-4	1	UTR_5_PRIME CG31708 UPSTREAM CR44483 INTRON CG31708
2L	9070926	2L_9070926_SNP [dm3] 2L_9070926_SNP [dm6]	G	T	3.397e^-4	1	UTR_5_PRIME CG31708 UPSTREAM CR44483 INTRON CG31708
2L	5454462	2L_5454462_SNP [dm3] 2L_5454462_SNP [dm6]	G	A	3.422e^-4	1	INTERGENIC
3R	15925314	3R_15925314_SNP [dm3] 3R_20099592_SNP [dm6]	C	T	3.427e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	7415937	2L_7415937_SNP [dm3] 2L_7415937_SNP [dm6]	A	C	3.429e^-4	1	INTRON chm
2R	21055693	2R_21055693_SNP [dm3] 2R_25168170_SNP [dm6]	G	T	3.436e^-4	1	INTRON CG34038
2R	21074167	2R_21074167_SNP [dm3] 2R_25186644_SNP [dm6]	A	G	3.436e^-4	1	SYNONYMOUS_CODING CG9380 INTRON CG9380
3R	21485300	3R_21485300_SNP [dm3] 3R_25659578_SNP [dm6]	G	A	3.445e^-4	1	INTRON Tnks	TF binding site mE1_TFBS_inv
2R	21018383	2R_21018383_SNP [dm3] 2R_25130860_SNP [dm6]	T	A	3.446e^-4	1	DOWNSTREAM CG30430 INTRON lov
X	9642869	X_9642869_SNP [dm3] X_9748836_SNP [dm6]	C	G	3.452e^-4	1	INTRON Sp1
3L	10483096	3L_10483096_SNP [dm3] 3L_10489996_SNP [dm6]	C	T	3.463e^-4	1	UPSTREAM S-Lap4 INTRON A2bp1
3R	26090266	3R_26090266_SNP [dm3] 3R_30264544_SNP [dm6]	G	A	3.465e^-4	1	INTERGENIC
2L	19788261	2L_19788261_SNP [dm3] 2L_19788261_SNP [dm6]	T	C	3.474e^-4	1	INTRON CdGAPr
2L	8658073	2L_8658073_SNP [dm3] 2L_8658073_SNP [dm6]	T	C	3.492e^-4	1	INTRON Sema-1a
3L	16987443	3L_16987443_SNP [dm3] 3L_16994343_SNP [dm6]	T	G	3.499e^-4	1	UTR_3_PRIME Exn DOWNSTREAM CG3764	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16987471	3L_16987471_SNP [dm3] 3L_16994371_SNP [dm6]	A	T	3.501e^-4	1	UTR_3_PRIME Exn DOWNSTREAM CG3764	TF binding site BDTNP1_TFBS_da
2R	13398205	2R_13398205_DEL [dm3] 2R_17510700_DEL [dm6]	AACTAATAACTTA...	A	3.506e^-4	1	UTR_3_PRIME CG34193 UPSTREAM CG4847
2L	10346168	2L_10346168_SNP [dm3] 2L_10346168_SNP [dm6]	G	A	3.544e^-4	1	SYNONYMOUS_CODING CG5022
2R	14162664	2R_14162664_SNP [dm3] 2R_18275159_SNP [dm6]	T	G	3.555e^-4	1	DOWNSTREAM Ote INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7449491	2L_7449491_SNP [dm3] 2L_7449491_SNP [dm6]	A	C	3.566e^-4	1	UTR_5_PRIME santa-maria INTRON santa-maria
2L	1999806	2L_1999806_SNP [dm3] 2L_1999806_SNP [dm6]	G	T	3.577e^-4	1	UPSTREAM CR43464 INTRON CG33543
2L	19616746	2L_19616746_SNP [dm3] 2L_19616746_SNP [dm6]	C	T	3.584e^-4	1	INTRON Lar
X	13589589	X_13589589_SNP [dm3] X_13695556_SNP [dm6]	G	T	3.586e^-4	1	INTRON CG9940 & 1 other
3L	12690934	3L_12690934_SNP [dm3] 3L_12697834_SNP [dm6]	G	A	3.588e^-4	1	INTRON mirr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1603406	3R_1603406_SNP [dm3] 3R_5777684_SNP [dm6]	C	G	3.588e^-4	1	UTR_5_PRIME CG2082 INTRON CG2082
2L	6787882	2L_6787882_SNP [dm3] 2L_6787882_SNP [dm6]	A	G	3.589e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	16015453	3L_16015453_SNP [dm3] 3L_16022353_SNP [dm6]	C	T	3.613e^-4	1	UPSTREAM CR43949 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
3L	18132223	3L_18132223_SNP [dm3] 3L_18139123_SNP [dm6]	C	T	3.620e^-4	1	UPSTREAM gk INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	2029229	2L_2029229_SNP [dm3] 2L_2029229_SNP [dm6]	G	A	3.621e^-4	1	SYNONYMOUS_CODING CG4238	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10803385	2L_10803385_SNP [dm3] 2L_10803385_SNP [dm6]	C	A	3.629e^-4	1	UPSTREAM CR44581 DOWNSTREAM Nos INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	10803592	2L_10803592_SNP [dm3] 2L_10803592_SNP [dm6]	C	T	3.629e^-4	1	UPSTREAM CR44581 DOWNSTREAM Nos INTERGENIC	TF binding site mE1_TFBS_inv
2R	15577758	2R_15577758_SNP [dm3] 2R_19690253_SNP [dm6]	A	G	3.638e^-4	1	UPSTREAM CG15126 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	17719798	2R_17719798_SNP [dm3] 2R_21832293_SNP [dm6]	T	G	3.643e^-4	1	UPSTREAM CG13492 DOWNSTREAM CG34040 INTERGENIC
2L	7068798	2L_7068798_SNP [dm3] 2L_7068798_SNP [dm6]	T	C	3.661e^-4	1	SYNONYMOUS_CODING CG11289 DOWNSTREAM Pvf2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25407743	3R_25407743_SNP [dm3] 3R_29582021_SNP [dm6]	G	C	3.692e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	2026226	2L_2026226_SNP [dm3] 2L_2026226_SNP [dm6]	T	C	3.701e^-4	1	INTRON CG4238
2R	21018104	2R_21018104_SNP [dm3] 2R_25130581_SNP [dm6]	G	A	3.701e^-4	1	DOWNSTREAM CG30430 INTRON lov
2R	21025410	2R_21025410_SNP [dm3] 2R_25137887_SNP [dm6]	A	C	3.701e^-4	1	DOWNSTREAM CG43106 INTRON lov
2R	21027508	2R_21027508_SNP [dm3] 2R_25139985_SNP [dm6]	T	A	3.701e^-4	1	UPSTREAM CG43106 & 1 other INTERGENIC	TF binding site mE1_TFBS_sens
2R	21028123	2R_21028123_SNP [dm3] 2R_25140600_SNP [dm6]	C	G	3.701e^-4	1	UPSTREAM CG43106 & 1 other INTERGENIC
2R	21051189	2R_21051189_SNP [dm3] 2R_25163666_SNP [dm6]	A	G	3.701e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	21053934	2R_21053934_SNP [dm3] 2R_25166411_SNP [dm6]	A	G	3.701e^-4	1	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	21065193	2R_21065193_SNP [dm3] 2R_25177670_SNP [dm6]	G	A	3.701e^-4	1	UPSTREAM Peb INTERGENIC
2R	21067937	2R_21067937_SNP [dm3] 2R_25180414_SNP [dm6]	G	A	3.701e^-4	1	INTERGENIC
2L	9269081	2L_9269081_SNP [dm3] 2L_9269081_SNP [dm6]	C	G	3.711e^-4	1	INTRON Ggamma30A
2L	9269083	2L_9269083_INS [dm3] 2L_9269083_INS [dm6]	A	AAAGTTTC	3.711e^-4	1	INTRON Ggamma30A
2L	3449515	2L_3449515_SNP [dm3] 2L_3449515_SNP [dm6]	G	T	3.718e^-4	1	UPSTREAM Snx1 INTERGENIC
3L	8978936	3L_8978936_SNP [dm3] 3L_8985836_SNP [dm6]	C	A	3.736e^-4	1	UPSTREAM Galk & 1 other INTRON Galk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Ubx
2R	7653538	2R_7653538_SNP [dm3] 2R_11766033_SNP [dm6]	A	C	3.741e^-4	1	INTRON ths
2L	3722433	2L_3722433_SNP [dm3] 2L_3722433_SNP [dm6]	A	G	3.745e^-4	1	SYNONYMOUS_CODING Shaw
X	7057882	X_7057882_SNP [dm3] X_7163849_SNP [dm6]	A	C	3.753e^-4	1	INTRON CG9650	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	24647337	3R_24647337_SNP [dm3] 3R_28821615_SNP [dm6]	T	C	3.756e^-4	1	SYNONYMOUS_CODING CG1647	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10416892	2L_10416892_SNP [dm3] 2L_10416892_SNP [dm6]	T	C	3.757e^-4	1	INTRON Klp31E	TF binding site BDTNP1_TFBS_twi
2L	10416916	2L_10416916_SNP [dm3] 2L_10416916_SNP [dm6]	T	C	3.757e^-4	1	INTRON Klp31E	TF binding site BDTNP1_TFBS_twi
2R	14511908	2R_14511908_SNP [dm3] 2R_18624403_SNP [dm6]	A	G	3.758e^-4	1	SYNONYMOUS_CODING Atg7 UPSTREAM Sec6 INTRON Atg7	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5399067	3L_5399067_SNP [dm3] 3L_5405967_SNP [dm6]	T	C	3.764e^-4	1	INTERGENIC
3R	16195686	3R_16195686_SNP [dm3] 3R_20369964_SNP [dm6]	A	T	3.766e^-4	1	INTERGENIC
3L	1560261	3L_1560261_SNP [dm3] 3L_1560261_SNP [dm6]	A	C	3.785e^-4	1	SYNONYMOUS_CODING CG7879 DOWNSTREAM Pex10	TF binding site mE1_TFBS_inv
3L	3002509	3L_3002509_DEL [dm3] 3L_3002509_DEL [dm6]	ATGG	T	3.792e^-4	1	UPSTREAM FMRFaR INTRON FMRFaR
3R	21485271	3R_21485271_SNP [dm3] 3R_25659549_SNP [dm6]	G	A	3.800e^-4	1	INTRON Tnks	TF binding site mE1_TFBS_inv
3L	19266392	3L_19266392_SNP [dm3] 3L_19273292_SNP [dm6]	T	C	3.806e^-4	1	SYNONYMOUS_CODING CG14085	TF binding site mE1_TFBS_cad
2L	5671593	2L_5671593_SNP [dm3] 2L_5671593_SNP [dm6]	T	A	3.819e^-4	1	DOWNSTREAM Hsp60C INTERGENIC
2L	5671603	2L_5671603_SNP [dm3] 2L_5671603_SNP [dm6]	C	G	3.819e^-4	1	DOWNSTREAM Hsp60C INTERGENIC
2L	9270007	2L_9270007_SNP [dm3] 2L_9270007_SNP [dm6]	A	G	3.819e^-4	1	INTRON Ggamma30A
2R	12300898	2R_12300898_SNP [dm3] 2R_16413393_SNP [dm6]	T	C	3.822e^-4	1	INTRON Sema-2b
3L	16987178	3L_16987178_SNP [dm3] 3L_16994078_SNP [dm6]	G	A	3.826e^-4	1	SYNONYMOUS_CODING Exn DOWNSTREAM CG3764	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15499675	2L_15499675_SNP [dm3] 2L_15499675_SNP [dm6]	A	C	3.838e^-4	1	INTRON lace	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	7213785	2L_7213785_SNP [dm3] 2L_7213785_SNP [dm6]	A	G	3.861e^-4	1	INTRON CG13784	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	19131521	3L_19131521_SNP [dm3] 3L_19138421_SNP [dm6]	C	T	3.881e^-4	1	INTRON CG14082
3R	17941680	3R_17941680_SNP [dm3] 3R_22115958_SNP [dm6]	C	T	3.881e^-4	1	NON_SYNONYMOUS_CODING Ir94b DOWNSTREAM Ir94a
3R	17941793	3R_17941793_SNP [dm3] 3R_22116071_SNP [dm6]	T	G	3.881e^-4	1	SYNONYMOUS_CODING Ir94b DOWNSTREAM Ir94a
X	6429334	X_6429334_SNP [dm3] X_6535301_SNP [dm6]	A	T	3.894e^-4	1	INTRON dx	TF binding site BDTNP1_TFBS_dl
X	7670148	X_7670148_SNP [dm3] X_7776115_SNP [dm6]	C	T	3.902e^-4	1	INTERGENIC
2L	11858781	2L_11858781_SNP [dm3] 2L_11858781_SNP [dm6]	G	C	3.911e^-4	1	INTRON Pde1c
3L	923228	3L_923228_DEL [dm3] 3L_923228_DEL [dm6]	AACACGA	A	3.935e^-4	1	INTRON Glut1
2R	16513825	2R_16513825_SNP [dm3] 2R_20626320_SNP [dm6]	A	G	3.937e^-4	1	SYNONYMOUS_CODING CG16742
2R	20120883	2R_20120883_SNP [dm3] 2R_24233360_SNP [dm6]	A	G	3.945e^-4	1	INTERGENIC
2L	8657739	2L_8657739_SNP [dm3] 2L_8657739_SNP [dm6]	A	G	3.952e^-4	1	INTRON Sema-1a
2R	21070714	2R_21070714_SNP [dm3] 2R_25183191_SNP [dm6]	T	A	3.956e^-4	1	DOWNSTREAM CG9380 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	23497692	3R_23497692_SNP [dm3] 3R_27671970_SNP [dm6]	T	C	3.987e^-4	1	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	5409546	X_5409546_SNP [dm3] X_5515513_SNP [dm6]	G	A	3.996e^-4	1	INTERGENIC
3R	17713486	3R_17713486_SNP [dm3] 3R_21887764_SNP [dm6]	A	T	4.001e^-4	1	UPSTREAM dnd INTRON CG6678
2R	17427672	2R_17427672_SNP [dm3] 2R_21540167_SNP [dm6]	C	T	4.001e^-4	1	NON_SYNONYMOUS_CODING CG30283 UPSTREAM CG33226 INTRON Egfr	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	14769310	2L_14769310_SNP [dm3] 2L_14769310_SNP [dm6]	A	T	4.006e^-4	1	INTERGENIC
2R	15755564	2R_15755564_SNP [dm3] 2R_19868059_SNP [dm6]	C	T	4.009e^-4	1	UPSTREAM Obp56i & 1 other INTRON Obp56i
2R	18968313	2R_18968313_SNP [dm3] 2R_23080790_SNP [dm6]	G	T	4.013e^-4	1	NON_SYNONYMOUS_CODING Gr59a	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
X	12263684	X_12263684_SNP [dm3] X_12369651_SNP [dm6]	T	A	4.018e^-4	1	INTERGENIC
2R	14127188	2R_14127188_SNP [dm3] 2R_18239683_SNP [dm6]	G	C	4.023e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1463021	3L_1463021_SNP [dm3] 3L_1463021_SNP [dm6]	A	G	4.040e^-4	1	UPSTREAM CR44842 & 1 other INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3R	26291642	3R_26291642_SNP [dm3] 3R_30465920_SNP [dm6]	T	A	4.043e^-4	1	UPSTREAM PH4alphaEFB DOWNSTREAM CDase INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	4467341	X_4467341_SNP [dm3] X_4573308_SNP [dm6]	A	G	4.047e^-4	1	INTRON CR32773
3R	25402904	3R_25402904_SNP [dm3] 3R_29577182_SNP [dm6]	C	T	4.048e^-4	1	INTERGENIC
3R	2495136	3R_2495136_SNP [dm3] 3R_6669414_SNP [dm6]	G	A	4.050e^-4	1	INTRON lab	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl
X	17665525	X_17665525_SNP [dm3] X_17771492_SNP [dm6]	G	T	4.054e^-4	1	INTRON unc-4
2R	16579722	2R_16579722_SNP [dm3] 2R_20692217_SNP [dm6]	C	T	4.067e^-4	1	UPSTREAM CG13438 EXON CR44659
2L	10804327	2L_10804327_SNP [dm3] 2L_10804327_SNP [dm6]	C	G	4.069e^-4	1	UTR_3_PRIME Nos
3R	20775094	3R_20775094_SNP [dm3] 3R_24949372_SNP [dm6]	T	C	4.069e^-4	1	NON_SYNONYMOUS_CODING CG13646
2L	6533395	2L_6533395_SNP [dm3] 2L_6533395_SNP [dm6]	A	G	4.084e^-4	1	INTRON eya
3L	7309602	3L_7309602_SNP [dm3] 3L_7316502_SNP [dm6]	C	T	4.092e^-4	1	INTERGENIC
3L	9617089	3L_9617089_SNP [dm3] 3L_9623989_SNP [dm6]	A	G	4.094e^-4	1	UPSTREAM CG3335 DOWNSTREAM LanB2 INTERGENIC
3L	9617118	3L_9617118_SNP [dm3] 3L_9624018_SNP [dm6]	A	T	4.094e^-4	1	UPSTREAM CG3335 DOWNSTREAM LanB2 INTERGENIC
3L	9617190	3L_9617190_SNP [dm3] 3L_9624090_SNP [dm6]	A	T	4.094e^-4	1	UPSTREAM CG3335 DOWNSTREAM LanB2 INTERGENIC
X	18813717	X_18813717_SNP [dm3] X_18919684_SNP [dm6]	G	A	4.094e^-4	1	INTERGENIC
X	18813777	X_18813777_DEL [dm3] X_18919744_DEL [dm6]	TTAAA	T	4.094e^-4	1	INTERGENIC
X	18813889	X_18813889_SNP [dm3] X_18919856_SNP [dm6]	T	C	4.094e^-4	1	INTERGENIC
X	18814040	X_18814040_SNP [dm3] X_18920007_SNP [dm6]	A	G	4.094e^-4	1	INTERGENIC
X	18814591	X_18814591_SNP [dm3] X_18920558_SNP [dm6]	C	T	4.094e^-4	1	INTERGENIC
X	18814592	X_18814592_SNP [dm3] X_18920559_SNP [dm6]	G	A	4.094e^-4	1	INTERGENIC
X	18814612	X_18814612_SNP [dm3] X_18920579_SNP [dm6]	T	A	4.094e^-4	1	INTERGENIC
X	18814661	X_18814661_SNP [dm3] X_18920628_SNP [dm6]	T	G	4.094e^-4	1	INTERGENIC
X	18815682	X_18815682_SNP [dm3] X_18921649_SNP [dm6]	G	T	4.094e^-4	1	INTERGENIC
X	18815737	X_18815737_SNP [dm3] X_18921704_SNP [dm6]	G	T	4.094e^-4	1	INTERGENIC
X	18816146	X_18816146_SNP [dm3] X_18922113_SNP [dm6]	A	C	4.094e^-4	1	INTERGENIC
X	18816207	X_18816207_SNP [dm3] X_18922174_SNP [dm6]	G	C	4.094e^-4	1	INTERGENIC
X	18816250	X_18816250_INS [dm3] X_18922217_INS [dm6]	T	TA	4.094e^-4	1	INTERGENIC
2L	14721976	2L_14721976_SNP [dm3] 2L_14721976_SNP [dm6]	T	C	4.110e^-4	1	INTERGENIC
3R	7755333	3R_7755333_SNP [dm3] 3R_11929611_SNP [dm6]	G	A	4.113e^-4	1	INTRON Cad87A
3L	3633578	3L_3633578_SNP [dm3] 3L_3633578_SNP [dm6]	T	A	4.125e^-4	1	INTRON dar1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	21127796	2R_21127796_SNP [dm3] 2R_25240273_SNP [dm6]	G	T	4.175e^-4	1	INTRON CG9380
X	17665523	X_17665523_SNP [dm3] X_17771490_SNP [dm6]	A	G	4.182e^-4	1	INTRON unc-4
X	18814756	X_18814756_SNP [dm3] X_18920723_SNP [dm6]	A	G	4.195e^-4	1	INTERGENIC
X	13492696	X_13492696_SNP [dm3] X_13598663_SNP [dm6]	G	T	4.195e^-4	1	INTRON up	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	11439867	2R_11439867_SNP [dm3] 2R_15552362_SNP [dm6]	G	A	4.196e^-4	1	INTERGENIC
2R	11439883	2R_11439883_SNP [dm3] 2R_15552378_SNP [dm6]	G	A	4.196e^-4	1	INTERGENIC
X	5656077	X_5656077_SNP [dm3] X_5762044_SNP [dm6]	A	G	4.196e^-4	1	INTRON MAPk-Ak2
2R	18819667	2R_18819667_SNP [dm3] 2R_22932144_SNP [dm6]	T	A	4.202e^-4	1	STOP_GAINED CG3788 DOWNSTREAM CG42678
3R	26987188	3R_26987188_SNP [dm3] 3R_31161466_SNP [dm6]	C	G	4.218e^-4	1	INTRON Gycbeta100B & 1 other
X	5866221	X_5866221_SNP [dm3] X_5972188_SNP [dm6]	A	C	4.248e^-4	1	INTRON Grip
2L	7056202	2L_7056202_INS [dm3] 2L_7056202_INS [dm6]	T	TT	4.250e^-4	1	UPSTREAM Mnn1 DOWNSTREAM milt INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_zfh1
2L	7056204	2L_7056204_SNP [dm3] 2L_7056204_SNP [dm6]	C	A	4.250e^-4	1	UPSTREAM Mnn1 DOWNSTREAM milt INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_zfh1
2L	2979431	2L_2979431_SNP [dm3] 2L_2979431_SNP [dm6]	A	C	4.254e^-4	1	UPSTREAM CG9643 DOWNSTREAM CG3165 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2L	10506642	2L_10506642_SNP [dm3] 2L_10506642_SNP [dm6]	G	C	4.254e^-4	1	UTR_5_PRIME Myo31DF UPSTREAM CG6094 INTRON Myo31DF EXON CR44224	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	13895657	3L_13895657_SNP [dm3] 3L_13902557_SNP [dm6]	C	G	4.262e^-4	1	UTR_5_PRIME dysc
2L	10054132	2L_10054132_SNP [dm3] 2L_10054132_SNP [dm6]	T	G	4.273e^-4	1	UPSTREAM Cpr31A DOWNSTREAM CR44875 INTERGENIC
2L	14769344	2L_14769344_SNP [dm3] 2L_14769344_SNP [dm6]	G	A	4.280e^-4	1	INTERGENIC
2L	15772096	2L_15772096_SNP [dm3] 2L_15772096_SNP [dm6]	G	T	4.283e^-4	1	SYNONYMOUS_CODING CG31826 UPSTREAM Ku80	TF binding site BDTNP1_TFBS_dl
3L	8978969	3L_8978969_SNP [dm3] 3L_8985869_SNP [dm6]	C	T	4.286e^-4	1	UPSTREAM Galk & 1 other INTRON Galk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Ubx
3L	15984923	3L_15984923_SNP [dm3] 3L_15991823_SNP [dm6]	A	C	4.286e^-4	1	UTR_3_PRIME Hip14 DOWNSTREAM Hip14 & 1 other
3R	5807118	3R_5807118_SNP [dm3] 3R_9981396_SNP [dm6]	C	T	4.302e^-4	1	INTRON Glut4EF
2R	21127808	2R_21127808_SNP [dm3] 2R_25240285_SNP [dm6]	C	A	4.307e^-4	1	INTRON CG9380
3L	4250809	3L_4250809_SNP [dm3] 3L_4250809_SNP [dm6]	G	T	4.311e^-4	1	SYNONYMOUS_CODING ago	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	18051485	2R_18051485_SNP [dm3] 2R_22163980_SNP [dm6]	T	A	4.316e^-4	1	NON_SYNONYMOUS_CODING CG34206 INTRON a
X	4123107	X_4123107_SNP [dm3] X_4229074_SNP [dm6]	T	A	4.320e^-4	1	INTERGENIC
2L	5266823	2L_5266823_SNP [dm3] 2L_5266823_SNP [dm6]	T	C	4.321e^-4	1	NON_SYNONYMOUS_CODING Cyp4ac2 DOWNSTREAM Cyp4ac1 INTRON tkv
3L	3611731	3L_3611731_SNP [dm3] 3L_3611731_SNP [dm6]	G	T	4.330e^-4	1	UPSTREAM CG10359 INTERGENIC
3L	8978827	3L_8978827_SNP [dm3] 3L_8985727_SNP [dm6]	T	C	4.339e^-4	1	START_GAINED Galk UTR_5_PRIME Galk UPSTREAM Galk & 1 other INTRON Galk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Ubx
3R	15973841	3R_15973841_SNP [dm3] 3R_20148119_SNP [dm6]	A	T	4.354e^-4	1	INTERGENIC
2L	13964484	2L_13964484_SNP [dm3] 2L_13964484_SNP [dm6]	A	T	4.355e^-4	1	DOWNSTREAM NimB2 INTRON NimB1	TF binding site mE1_TFBS_chinmo
X	6204739	X_6204739_SNP [dm3] X_6310706_SNP [dm6]	A	T	4.358e^-4	1	INTRON CG15894	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	25160601	3R_25160601_SNP [dm3] 3R_29334879_SNP [dm6]	T	G	4.359e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	1378466	3L_1378466_SNP [dm3] 3L_1378466_SNP [dm6]	G	C	4.364e^-4	1	INTRON Ptp61F & 1 other
2R	14549954	2R_14549954_SNP [dm3] 2R_18662449_SNP [dm6]	G	T	4.377e^-4	1	UPSTREAM Gint3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6118823	3L_6118823_SNP [dm3] 3L_6125723_SNP [dm6]	G	T	4.379e^-4	1	NON_SYNONYMOUS_CODING l_3_mbn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	21406667	3R_21406667_SNP [dm3] 3R_25580945_SNP [dm6]	T	A	4.379e^-4	1	DOWNSTREAM CG4582 INTRON msi
3R	15796272	3R_15796272_SNP [dm3] 3R_19970550_SNP [dm6]	A	G	4.406e^-4	1	INTRON Hs6st
3L	4273695	3L_4273695_SNP [dm3] 3L_4273695_SNP [dm6]	T	G	4.407e^-4	1	INTRON CG1273
2L	2858256	2L_2858256_SNP [dm3] 2L_2858256_SNP [dm6]	C	T	4.419e^-4	1	INTRON CG2991	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	10749130	2L_10749130_SNP [dm3] 2L_10749130_SNP [dm6]	C	G	4.419e^-4	1	INTRON CG17124
3L	6602026	3L_6602026_SNP [dm3] 3L_6608926_SNP [dm6]	C	T	4.425e^-4	1	UPSTREAM CG8398 DOWNSTREAM CG8368 EXON CR45418
2L	2025777	2L_2025777_SNP [dm3] 2L_2025777_SNP [dm6]	C	T	4.425e^-4	1	INTRON CG4238
2L	7056196	2L_7056196_SNP [dm3] 2L_7056196_SNP [dm6]	C	G	4.426e^-4	1	UPSTREAM Mnn1 DOWNSTREAM milt INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_zfh1
3L	16987278	3L_16987278_SNP [dm3] 3L_16994178_SNP [dm6]	C	A	4.431e^-4	1	UTR_3_PRIME Exn DOWNSTREAM CG3764	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	6429466	X_6429466_SNP [dm3] X_6535433_SNP [dm6]	T	C	4.440e^-4	1	INTRON dx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	21127809	2R_21127809_SNP [dm3] 2R_25240286_SNP [dm6]	A	C	4.457e^-4	1	INTRON CG9380
2R	21070163	2R_21070163_SNP [dm3] 2R_25182640_SNP [dm6]	A	C	4.467e^-4	1	DOWNSTREAM CG9380 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	3444018	2L_3444018_SNP [dm3] 2L_3444018_SNP [dm6]	A	G	4.468e^-4	1	INTERGENIC
2R	17917023	2R_17917023_SNP [dm3] 2R_22029518_SNP [dm6]	T	C	4.485e^-4	1	INTRON CG34370
3R	13618832	3R_13618832_SNP [dm3] 3R_17793110_SNP [dm6]	G	A	4.486e^-4	1	INTRON CG43102
X	6730001	X_6730001_SNP [dm3] X_6835968_SNP [dm6]	A	G	4.511e^-4	1	SYNONYMOUS_CODING nonC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	7772981	X_7772981_DEL [dm3] X_7878948_DEL [dm6]	TGGAAAAATC	T	4.511e^-4	1	UPSTREAM Ir7d DOWNSTREAM Ir7e INTERGENIC
2L	2781731	2L_2781731_SNP [dm3] 2L_2781731_SNP [dm6]	G	A	4.513e^-4	1	UTR_3_PRIME Syt1
3R	25448262	3R_25448262_SNP [dm3] 3R_29622540_SNP [dm6]	A	T	4.519e^-4	1	INTERGENIC
3R	14048386	3R_14048386_SNP [dm3] 3R_18222664_SNP [dm6]	G	A	4.530e^-4	1	SYNONYMOUS_CODING mTerf5	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	14634719	2L_14634719_INS [dm3] 2L_14634719_INS [dm6]	G	GCTGTCTTTTGCCAGAGTTT...	4.531e^-4	1	INTRON osp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	4142668	3L_4142668_SNP [dm3] 3L_4142668_SNP [dm6]	A	G	4.533e^-4	1	UPSTREAM CG32260 DOWNSTREAM Akh INTRON CG32260
3R	9973092	3R_9973092_SNP [dm3] 3R_14147370_SNP [dm6]	A	T	4.543e^-4	1	INTERGENIC
2L	5266792	2L_5266792_SNP [dm3] 2L_5266792_SNP [dm6]	G	T	4.555e^-4	1	SYNONYMOUS_CODING Cyp4ac2 DOWNSTREAM Cyp4ac1 INTRON tkv
3L	3380705	3L_3380705_SNP [dm3] 3L_3380705_SNP [dm6]	C	T	4.564e^-4	1	DOWNSTREAM CG12014 INTERGENIC
3L	16987279	3L_16987279_SNP [dm3] 3L_16994179_SNP [dm6]	T	A	4.566e^-4	1	UTR_3_PRIME Exn DOWNSTREAM CG3764	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11992174	3L_11992174_SNP [dm3] 3L_11999074_SNP [dm6]	G	C	4.566e^-4	1	UPSTREAM Grip163 DOWNSTREAM Pop2 INTRON Pop2
X	2458502	X_2458502_SNP [dm3] X_2564469_SNP [dm6]	C	T	4.573e^-4	1	INTRON Pdfr
3R	15189271	3R_15189271_SNP [dm3] 3R_19363549_SNP [dm6]	C	G	4.579e^-4	1	INTERGENIC
3R	5435240	3R_5435240_SNP [dm3] 3R_9609518_SNP [dm6]	T	C	4.582e^-4	1	INTRON CG8312
3L	18362235	3L_18362235_SNP [dm3] 3L_18369135_SNP [dm6]	A	G	4.589e^-4	1	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	21067137	2R_21067137_SNP [dm3] 2R_25179614_SNP [dm6]	C	T	4.590e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7662142	2L_7662142_SNP [dm3] 2L_7662142_SNP [dm6]	C	T	4.598e^-4	1	INTRON Slob
3R	15088473	3R_15088473_SNP [dm3] 3R_19262751_SNP [dm6]	T	C	4.645e^-4	1	INTERGENIC
3R	15971014	3R_15971014_SNP [dm3] 3R_20145292_SNP [dm6]	A	G	4.650e^-4	1	INTERGENIC
3R	8671633	3R_8671633_SNP [dm3] 3R_12845911_SNP [dm6]	G	A	4.651e^-4	1	INTRON beat-Va
2L	10348780	2L_10348780_SNP [dm3] 2L_10348780_SNP [dm6]	T	C	4.653e^-4	1	SYNONYMOUS_CODING CG34367
X	5445405	X_5445405_SNP [dm3] X_5551372_SNP [dm6]	A	T	4.665e^-4	1	INTRON Vsx2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	21065011	2R_21065011_SNP [dm3] 2R_25177488_SNP [dm6]	C	A	4.666e^-4	1	UPSTREAM Peb INTERGENIC
3R	20499310	3R_20499310_SNP [dm3] 3R_24673588_SNP [dm6]	G	C	4.669e^-4	1	INTRON slo
3R	21982914	3R_21982914_SNP [dm3] 3R_26157192_SNP [dm6]	A	T	4.687e^-4	1	INTERGENIC
X	6448698	X_6448698_SNP [dm3] X_6554665_SNP [dm6]	C	T	4.695e^-4	1	SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_chinmo
3L	1100121	3L_1100121_SNP [dm3] 3L_1100121_SNP [dm6]	A	G	4.700e^-4	1	SYNONYMOUS_CODING bab1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	14074204	2L_14074204_SNP [dm3] 2L_14074204_SNP [dm6]	C	A	4.707e^-4	1	INTRON nAChRalpha5
2L	9269721	2L_9269721_SNP [dm3] 2L_9269721_SNP [dm6]	G	T	4.707e^-4	1	INTRON Ggamma30A
2L	10053506	2L_10053506_SNP [dm3] 2L_10053506_SNP [dm6]	C	A	4.710e^-4	1	UPSTREAM CR44875 & 1 other INTERGENIC
2L	10430541	2L_10430541_SNP [dm3] 2L_10430541_SNP [dm6]	G	A	4.711e^-4	1	SYNONYMOUS_CODING CG5343 UPSTREAM TfIIB DOWNSTREAM CG5188	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	6589433	2L_6589433_SNP [dm3] 2L_6589433_SNP [dm6]	G	C	4.722e^-4	1	INTRON CG11319
3R	16397468	3R_16397468_SNP [dm3] 3R_20571746_SNP [dm6]	G	A	4.724e^-4	1	SYNONYMOUS_CODING CG5191	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7056223	2L_7056223_SNP [dm3] 2L_7056223_SNP [dm6]	C	A	4.735e^-4	1	UPSTREAM Mnn1 DOWNSTREAM milt INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_zfh1
3L	3139310	3L_3139310_SNP [dm3] 3L_3139310_SNP [dm6]	C	T	4.748e^-4	1	INTRON CG11537
3R	26815158	3R_26815158_SNP [dm3] 3R_30989436_SNP [dm6]	C	T	4.748e^-4	1	DOWNSTREAM CG31008 INTRON 5-HT7
3L	3150980	3L_3150980_SNP [dm3] 3L_3150980_SNP [dm6]	G	A	4.749e^-4	1	SYNONYMOUS_CODING BtbVII	TF binding site mE1_TFBS_chinmo
3R	20499312	3R_20499312_SNP [dm3] 3R_24673590_SNP [dm6]	T	C	4.758e^-4	1	INTRON slo
X	2880017	X_2880017_SNP [dm3] X_2985984_SNP [dm6]	A	G	4.767e^-4	1	INTRON kirre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18309209	2R_18309209_SNP [dm3] 2R_22421704_SNP [dm6]	T	A	4.772e^-4	1	SYNONYMOUS_CODING rad50	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9883462	2L_9883462_SNP [dm3] 2L_9883462_SNP [dm6]	T	G	4.774e^-4	1	INTRON nAChRalpha6
2L	15499750	2L_15499750_SNP [dm3] 2L_15499750_SNP [dm6]	C	T	4.774e^-4	1	INTRON lace	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	12126521	X_12126521_SNP [dm3] X_12232488_SNP [dm6]	T	C	4.777e^-4	1	INTRON Ten-a
3R	14808912	3R_14808912_SNP [dm3] 3R_18983190_SNP [dm6]	A	G	4.787e^-4	1	SYNONYMOUS_CODING snRNP-U1-C UPSTREAM gukh DOWNSTREAM dnk	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	14808939	3R_14808939_SNP [dm3] 3R_18983217_SNP [dm6]	G	A	4.787e^-4	1	SYNONYMOUS_CODING snRNP-U1-C UPSTREAM gukh DOWNSTREAM dnk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	3843267	2L_3843267_SNP [dm3] 2L_3843267_SNP [dm6]	C	A	4.802e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	15946569	3L_15946569_DEL [dm3] 3L_15953469_DEL [dm6]	CATAC	C	4.803e^-4	1	UPSTREAM Pka-C3 INTRON Pka-C3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9269397	2L_9269397_SNP [dm3] 2L_9269397_SNP [dm6]	A	C	4.811e^-4	1	INTRON Ggamma30A
2L	10053499	2L_10053499_SNP [dm3] 2L_10053499_SNP [dm6]	A	G	4.811e^-4	1	UPSTREAM CR44875 & 1 other INTERGENIC
3R	21568949	3R_21568949_SNP [dm3] 3R_25743227_SNP [dm6]	T	C	4.819e^-4	1	INTRON LpR1
2L	10476227	2L_10476227_SNP [dm3] 2L_10476227_SNP [dm6]	A	G	4.838e^-4	1	UPSTREAM RluA-2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	2139791	3R_2139791_SNP [dm3] 3R_6314069_SNP [dm6]	C	T	4.843e^-4	1	INTRON Osi17
2L	15499787	2L_15499787_SNP [dm3] 2L_15499787_SNP [dm6]	T	C	4.858e^-4	1	INTRON lace	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	19210459	X_19210459_SNP [dm3] X_19316426_SNP [dm6]	A	T	4.869e^-4	1	INTRON out
3R	5817318	3R_5817318_SNP [dm3] 3R_9991596_SNP [dm6]	T	C	4.881e^-4	1	UTR_3_PRIME Glut4EF
3L	18130901	3L_18130901_SNP [dm3] 3L_18137801_SNP [dm6]	A	C	4.883e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11871596	3R_11871596_SNP [dm3] 3R_16045874_SNP [dm6]	C	G	4.883e^-4	1	SYNONYMOUS_CODING CG10407 DOWNSTREAM ird5
2L	12161440	2L_12161440_SNP [dm3] 2L_12161440_SNP [dm6]	T	C	4.897e^-4	1	SYNONYMOUS_CODING CG31760 UPSTREAM CG31861
2R	16321108	2R_16321108_SNP [dm3] 2R_20433603_SNP [dm6]	A	G	4.910e^-4	1	INTRON CG12484
3L	7770081	3L_7770081_SNP [dm3] 3L_7776981_SNP [dm6]	T	C	4.914e^-4	1	DOWNSTREAM CG32369 INTERGENIC	regulatory region REDfly_CRMs
3R	25146385	3R_25146385_SNP [dm3] 3R_29320663_SNP [dm6]	C	T	4.927e^-4	1	INTERGENIC
3R	15048934	3R_15048934_SNP [dm3] 3R_19223212_SNP [dm6]	T	A	4.936e^-4	1	INTRON vib
2R	14353819	2R_14353819_SNP [dm3] 2R_18466314_SNP [dm6]	A	T	4.939e^-4	1	INTRON CG30116
2R	14353831	2R_14353831_SNP [dm3] 2R_18466326_SNP [dm6]	G	A	4.939e^-4	1	INTRON CG30116
2R	20496324	2R_20496324_SNP [dm3] 2R_24608801_SNP [dm6]	G	A	4.940e^-4	1	DOWNSTREAM CG42361 INTRON CG42360	TF binding site mE1_TFBS_cad
2L	7805809	2L_7805809_INS [dm3] 2L_7805809_INS [dm6]	T	TT	4.954e^-4	1	INTRON cdc14	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5303722	3L_5303722_SNP [dm3] 3L_5310622_SNP [dm6]	G	C	4.959e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	20906018	X_20906018_SNP [dm3] X_21034991_SNP [dm6]	A	C	4.968e^-4	1	UPSTREAM Ntf-2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	4467615	X_4467615_SNP [dm3] X_4573582_SNP [dm6]	T	A	4.971e^-4	1	INTRON CR32773	TF binding site BDTNP1_TFBS_dl
3R	16888971	3R_16888971_SNP [dm3] 3R_21063249_SNP [dm6]	A	G	4.982e^-4	1	SYNONYMOUS_CODING Cortactin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19094609	2R_19094609_SNP [dm3] 2R_23207086_SNP [dm6]	C	T	4.982e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	16327875	2R_16327875_SNP [dm3] 2R_20440370_SNP [dm6]	A	C	5.005e^-4	1	INTRON CG12484	TF binding site mE1_TFBS_inv
X	7754653	X_7754653_SNP [dm3] X_7860620_SNP [dm6]	C	T	5.005e^-4	1	INTERGENIC
X	15028332	X_15028332_SNP [dm3] X_15134299_SNP [dm6]	C	A	5.013e^-4	1	INTRON drd
3L	5303732	3L_5303732_SNP [dm3] 3L_5310632_SNP [dm6]	T	C	5.013e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	22381875	3R_22381875_SNP [dm3] 3R_26556153_SNP [dm6]	A	C	5.021e^-4	1	INTRON scrib	TF binding site mE1_TFBS_cnc
3L	18062619	3L_18062619_SNP [dm3] 3L_18069519_SNP [dm6]	C	A	5.030e^-4	1	DOWNSTREAM CG44005 INTRON CG44006
3R	22524029	3R_22524029_SNP [dm3] 3R_26698307_SNP [dm6]	C	T	5.037e^-4	1	UTR_3_PRIME amon
3R	11699425	3R_11699425_SNP [dm3] 3R_15873703_SNP [dm6]	A	C	5.039e^-4	1	INTRON CG31183
3R	11699429	3R_11699429_SNP [dm3] 3R_15873707_SNP [dm6]	A	G	5.039e^-4	1	INTRON CG31183
3R	11311255	3R_11311255_SNP [dm3] 3R_15485533_SNP [dm6]	A	G	5.043e^-4	1	SYNONYMOUS_CODING Trissin UPSTREAM CG5205 & 1 other DOWNSTREAM Rh6	TF binding site mE1_TFBS_HSA
2R	18569724	2R_18569724_SNP [dm3] 2R_22682219_SNP [dm6]	A	G	5.049e^-4	1	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	24896639	3R_24896639_SNP [dm3] 3R_29070917_SNP [dm6]	C	G	5.050e^-4	1	INTRON CG11873	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	19501441	2R_19501441_SNP [dm3] 2R_23613918_SNP [dm6]	C	T	5.082e^-4	1	INTRON CG17664 & 1 other
3R	15048885	3R_15048885_SNP [dm3] 3R_19223163_SNP [dm6]	C	T	5.085e^-4	1	INTRON vib
3R	15048911	3R_15048911_SNP [dm3] 3R_19223189_SNP [dm6]	C	A	5.085e^-4	1	INTRON vib
2R	15988266	2R_15988266_DEL [dm3] 2R_20100761_DEL [dm6]	ACTAGCA	A	5.095e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14148786	3L_14148786_SNP [dm3] 3L_14155686_SNP [dm6]	G	T	5.109e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10458816	2L_10458816_SNP [dm3] 2L_10458816_SNP [dm6]	G	A	5.117e^-4	1	SPLICE_SITE_REGION LM408 SYNONYMOUS_CODING LM408	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	13403447	2R_13403447_SNP [dm3] 2R_17515942_SNP [dm6]	G	A	5.124e^-4	1	NON_SYNONYMOUS_CODING CG4853
2L	2856776	2L_2856776_SNP [dm3] 2L_2856776_SNP [dm6]	C	A	5.129e^-4	1	UTR_3_PRIME RpS21 UPSTREAM CG3104 & 1 other DOWNSTREAM RpS21	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
2L	2856783	2L_2856783_SNP [dm3] 2L_2856783_SNP [dm6]	A	C	5.129e^-4	1	UTR_3_PRIME RpS21 UPSTREAM CG2991 DOWNSTREAM RpS21	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
2R	19498830	2R_19498830_SNP [dm3] 2R_23611307_SNP [dm6]	A	G	5.130e^-4	1	INTRON CG17664 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	2310576	3L_2310576_SNP [dm3] 3L_2310576_SNP [dm6]	C	T	5.139e^-4	1	INTERGENIC
3L	2193921	3L_2193921_SNP [dm3] 3L_2193921_SNP [dm6]	C	T	5.143e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	7216883	2L_7216883_SNP [dm3] 2L_7216883_SNP [dm6]	C	T	5.145e^-4	1	INTRON CG13784
2L	7216957	2L_7216957_SNP [dm3] 2L_7216957_SNP [dm6]	G	A	5.145e^-4	1	INTRON CG13784	TF binding site BDTNP1_TFBS_Med
3L	5937711	3L_5937711_SNP [dm3] 3L_5944611_SNP [dm6]	T	C	5.148e^-4	1	INTRON CG33993
3L	9718027	3L_9718027_SNP [dm3] 3L_9724927_SNP [dm6]	G	A	5.149e^-4	1	SYNONYMOUS_CODING defl	TF binding site mE1_TFBS_cad
3R	21825068	3R_21825068_SNP [dm3] 3R_25999346_SNP [dm6]	G	A	5.192e^-4	1	UPSTREAM E_spl_mgamma-HLH DOWNSTREAM E_spl_mdelta-HLH INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4343247	2L_4343247_SNP [dm3] 2L_4343247_SNP [dm6]	G	A	5.192e^-4	1	SYNONYMOUS_CODING Atet UPSTREAM mir-1005	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	17208946	3R_17208946_INS [dm3] 3R_21383224_INS [dm6]	T	TCTTATATTTT...	5.218e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
3R	17208956	3R_17208956_SNP [dm3] 3R_21383234_SNP [dm6]	T	G	5.218e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
3R	17208968	3R_17208968_SNP [dm3] 3R_21383246_SNP [dm6]	T	A	5.218e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
3R	17208982	3R_17208982_DEL [dm3] 3R_21383260_DEL [dm6]	CAACCA	C	5.218e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
X	20024511	X_20024511_SNP [dm3] X_20130478_SNP [dm6]	G	T	5.222e^-4	1	DOWNSTREAM CG42582 INTERGENIC
2R	14511758	2R_14511758_SNP [dm3] 2R_18624253_SNP [dm6]	A	G	5.224e^-4	1	SYNONYMOUS_CODING Atg7 UPSTREAM Sec6 INTRON Atg7	TF binding site mE1_TFBS_sens
2R	14511764	2R_14511764_SNP [dm3] 2R_18624259_SNP [dm6]	A	C	5.224e^-4	1	SYNONYMOUS_CODING Atg7 UPSTREAM Sec6 INTRON Atg7	TF binding site mE1_TFBS_sens
2L	10784586	2L_10784586_SNP [dm3] 2L_10784586_SNP [dm6]	G	T	5.236e^-4	1	DOWNSTREAM CR44582 INTRON CG31869
3L	5877212	3L_5877212_SNP [dm3] 3L_5884112_SNP [dm6]	G	A	5.240e^-4	1	DOWNSTREAM CG13287 INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	21025511	2R_21025511_SNP [dm3] 2R_25137988_SNP [dm6]	A	G	5.252e^-4	1	DOWNSTREAM CG43106 INTRON lov
3R	20687232	3R_20687232_SNP [dm3] 3R_24861510_SNP [dm6]	A	G	5.268e^-4	1	DOWNSTREAM CG13640 INTERGENIC
2L	2979350	2L_2979350_SNP [dm3] 2L_2979350_SNP [dm6]	A	G	5.271e^-4	1	UPSTREAM CG9643 DOWNSTREAM CG3165 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8291312	2R_8291312_SNP [dm3] 2R_12403807_SNP [dm6]	T	C	5.280e^-4	1	INTRON Cpr49Ae	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_twi
2R	8291337	2R_8291337_SNP [dm3] 2R_12403832_SNP [dm6]	C	T	5.280e^-4	1	INTRON Cpr49Ae	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_twi
3L	4301221	3L_4301221_SNP [dm3] 3L_4301221_SNP [dm6]	A	G	5.293e^-4	1	INTRON dyl
3L	4301246	3L_4301246_SNP [dm3] 3L_4301246_SNP [dm6]	C	A	5.293e^-4	1	INTRON dyl
2L	11506707	2L_11506707_SNP [dm3] 2L_11506707_SNP [dm6]	T	C	5.302e^-4	1	SYNONYMOUS_CODING spz4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19217397	3R_19217397_SNP [dm3] 3R_23391675_SNP [dm6]	G	A	5.302e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	9264540	2L_9264540_SNP [dm3] 2L_9264540_SNP [dm6]	T	A	5.306e^-4	1	INTRON Ggamma30A
2R	14839593	2R_14839593_SNP [dm3] 2R_18952088_SNP [dm6]	G	A	5.309e^-4	1	INTRON sano
3R	5322113	3R_5322113_SNP [dm3] 3R_9496391_SNP [dm6]	C	T	5.311e^-4	1	SYNONYMOUS_CODING CG8147 DOWNSTREAM RhoL	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	20084119	3L_20084119_SNP [dm3] 3L_20091019_SNP [dm6]	C	A	5.329e^-4	1	INTERGENIC
3R	18131679	3R_18131679_INS [dm3] 3R_22305957_INS [dm6]	G	CTTCTGTGCCACAACT...	5.330e^-4	1	INTERGENIC
2R	18831558	2R_18831558_SNP [dm3] 2R_22944035_SNP [dm6]	G	T	5.331e^-4	1	NON_SYNONYMOUS_CODING CG42694
2R	16358534	2R_16358534_INS [dm3] 2R_20471029_INS [dm6]	A	AGA	5.333e^-4	1	DOWNSTREAM CG12484 INTRON CG12484
3L	3138778	3L_3138778_SNP [dm3] 3L_3138778_SNP [dm6]	G	A	5.341e^-4	1	INTRON CG11537
2R	19501329	2R_19501329_SNP [dm3] 2R_23613806_SNP [dm6]	T	G	5.341e^-4	1	INTRON CG17664 & 1 other
X	18814039	X_18814039_SNP [dm3] X_18920006_SNP [dm6]	A	G	5.363e^-4	1	INTERGENIC
2L	6535394	2L_6535394_SNP [dm3] 2L_6535394_SNP [dm6]	T	C	5.374e^-4	1	INTRON eya	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	16350212	2R_16350212_SNP [dm3] 2R_20462707_SNP [dm6]	A	C	5.379e^-4	1	INTRON CG12484
2R	16350227	2R_16350227_DEL [dm3] 2R_20462722_DEL [dm6]	AC	A	5.379e^-4	1	INTRON CG12484
2R	2921974	2R_2921974_SNP [dm3] 2R_7034469_SNP [dm6]	A	G	5.412e^-4	1	SPLICE_SITE_REGION Tsp42Eh UPSTREAM Tsp42Ei INTRON Tsp42Eh
X	18817347	X_18817347_SNP [dm3] X_18923314_SNP [dm6]	C	T	5.424e^-4	1	INTERGENIC
3L	1380712	3L_1380712_SNP [dm3] 3L_1380712_SNP [dm6]	G	A	5.432e^-4	1	DOWNSTREAM tRNA:CR32330 & 2 others INTRON Ptp61F & 1 other	TF binding site BDTNP1_TFBS_dl
2R	7618987	2R_7618987_SNP [dm3] 2R_11731482_SNP [dm6]	T	C	5.432e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5964680	2L_5964680_SNP [dm3] 2L_5964680_SNP [dm6]	T	C	5.437e^-4	1	UPSTREAM psd DOWNSTREAM CG13992 INTRON psd
3R	2140690	3R_2140690_SNP [dm3] 3R_6314968_SNP [dm6]	A	G	5.443e^-4	1	UTR_5_PRIME Osi17 UPSTREAM Osi17	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	13923805	2R_13923805_SNP [dm3] 2R_18036300_SNP [dm6]	G	A	5.448e^-4	1	INTERGENIC
X	13257039	X_13257039_SNP [dm3] X_13363006_SNP [dm6]	A	T	5.500e^-4	1	INTRON Syt12
3L	13058142	3L_13058142_SNP [dm3] 3L_13065042_SNP [dm6]	C	A	5.501e^-4	1	INTERGENIC
2L	3443179	2L_3443179_SNP [dm3] 2L_3443179_SNP [dm6]	A	G	5.502e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_sna
2L	11331143	2L_11331143_SNP [dm3] 2L_11331143_SNP [dm6]	T	C	5.511e^-4	1	DOWNSTREAM CR44584 INTERGENIC
2L	11331145	2L_11331145_SNP [dm3] 2L_11331145_SNP [dm6]	T	A	5.511e^-4	1	DOWNSTREAM CR44584 INTERGENIC
3L	8976308	3L_8976308_INS [dm3] 3L_8983208_INS [dm6]	T	TT	5.513e^-4	1	UTR_3_PRIME Galk & 1 other	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	18067875	3L_18067875_DEL [dm3] 3L_18074775_DEL [dm6]	AA	A	5.513e^-4	1	UPSTREAM CG44004 EXON CR45391
3R	21989816	3R_21989816_SNP [dm3] 3R_26164094_SNP [dm6]	G	A	5.543e^-4	1	INTERGENIC
3R	21989824	3R_21989824_SNP [dm3] 3R_26164102_SNP [dm6]	A	C	5.543e^-4	1	INTERGENIC
3R	21989847	3R_21989847_SNP [dm3] 3R_26164125_SNP [dm6]	A	G	5.543e^-4	1	INTERGENIC
3R	21989852	3R_21989852_DEL [dm3] 3R_26164130_DEL [dm6]	AGGCAATAGGTAA...	A	5.543e^-4	1	INTERGENIC
3R	15970928	3R_15970928_SNP [dm3] 3R_20145206_SNP [dm6]	G	A	5.551e^-4	1	INTERGENIC
2L	2781724	2L_2781724_SNP [dm3] 2L_2781724_SNP [dm6]	T	C	5.552e^-4	1	UTR_3_PRIME Syt1
2L	10473624	2L_10473624_SNP [dm3] 2L_10473624_SNP [dm6]	A	C	5.553e^-4	1	INTRON RluA-1
3L	19468039	3L_19468039_SNP [dm3] 3L_19474939_SNP [dm6]	C	G	5.553e^-4	1	UPSTREAM CG32213 DOWNSTREAM CG18294 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
2L	15500746	2L_15500746_SNP [dm3] 2L_15500746_SNP [dm6]	A	T	5.566e^-4	1	INTRON lace	TF binding site BDTNP1_TFBS_dl
3L	13160635	3L_13160635_DEL [dm3] 3L_13167535_DEL [dm6]	AATA	A	5.569e^-4	1	INTERGENIC
3R	11871726	3R_11871726_SNP [dm3] 3R_16046004_SNP [dm6]	A	C	5.584e^-4	1	UTR_5_PRIME CG10407 UPSTREAM CG10407 DOWNSTREAM ird5
2L	8398623	2L_8398623_SNP [dm3] 2L_8398623_SNP [dm6]	A	G	5.586e^-4	1	UPSTREAM CG13386 DOWNSTREAM CG13385 INTERGENIC
2R	14372983	2R_14372983_SNP [dm3] 2R_18485478_SNP [dm6]	G	T	5.596e^-4	1	INTRON CG30116
2R	14372988	2R_14372988_SNP [dm3] 2R_18485483_SNP [dm6]	A	C	5.596e^-4	1	INTRON CG30116
2R	14372992	2R_14372992_DEL [dm3] 2R_18485487_DEL [dm6]	TA	T	5.596e^-4	1	INTRON CG30116
X	6448651	X_6448651_SNP [dm3] X_6554618_SNP [dm6]	G	C	5.606e^-4	1	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_chinmo
3L	8978821	3L_8978821_SNP [dm3] 3L_8985721_SNP [dm6]	G	T	5.609e^-4	1	UTR_5_PRIME Galk UPSTREAM Galk & 1 other INTRON Galk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Ubx
3L	8978835	3L_8978835_SNP [dm3] 3L_8985735_SNP [dm6]	G	C	5.609e^-4	1	UTR_5_PRIME Galk UPSTREAM Galk & 1 other INTRON Galk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Ubx
3L	8978848	3L_8978848_SNP [dm3] 3L_8985748_SNP [dm6]	G	A	5.609e^-4	1	UTR_5_PRIME Galk UPSTREAM Galk & 1 other INTRON Galk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Ubx
3L	5426653	3L_5426653_SNP [dm3] 3L_5433553_SNP [dm6]	C	A	5.615e^-4	1	INTRON CG34391
2L	1321197	2L_1321197_DEL [dm3] 2L_1321197_DEL [dm6]	CG	C	5.620e^-4	1	INTERGENIC
2L	3449251	2L_3449251_SNP [dm3] 2L_3449251_SNP [dm6]	C	T	5.631e^-4	1	UPSTREAM Snx1 INTERGENIC
2R	9904515	2R_9904515_SNP [dm3] 2R_14017010_SNP [dm6]	C	T	5.668e^-4	1	INTRON mam
3R	14188850	3R_14188850_SNP [dm3] 3R_18363128_SNP [dm6]	A	G	5.679e^-4	1	SYNONYMOUS_CODING CG7669	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1074877	3L_1074877_SNP [dm3] 3L_1074877_SNP [dm6]	G	A	5.684e^-4	1	INTRON bab1
3L	3151597	3L_3151597_SNP [dm3] 3L_3151597_SNP [dm6]	C	T	5.690e^-4	1	INTRON BtbVII	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3626595	3L_3626595_SNP [dm3] 3L_3626595_SNP [dm6]	C	G	5.692e^-4	1	UTR_5_PRIME dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	3924328	3L_3924328_SNP [dm3] 3L_3924328_SNP [dm6]	A	G	5.711e^-4	1	UTR_5_PRIME Eip63F-1 INTRON Eip63F-1
2R	7806630	2R_7806630_SNP [dm3] 2R_11919125_SNP [dm6]	T	C	5.716e^-4	1	DOWNSTREAM CR44305 INTERGENIC
2L	18153506	2L_18153506_SNP [dm3] 2L_18153506_SNP [dm6]	C	T	5.717e^-4	1	SYNONYMOUS_CODING CG17681
2L	2641459	2L_2641459_SNP [dm3] 2L_2641459_SNP [dm6]	C	A	5.719e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	7775706	3L_7775706_SNP [dm3] 3L_7782606_SNP [dm6]	T	A	5.723e^-4	1	INTRON CG32369	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	10552250	2R_10552250_SNP [dm3] 2R_14664745_SNP [dm6]	T	G	5.726e^-4	1	SYNONYMOUS_CODING CG12861 DOWNSTREAM CG12860
2R	13272323	2R_13272323_SNP [dm3] 2R_17384818_SNP [dm6]	A	G	5.741e^-4	1	INTERGENIC
2L	6787852	2L_6787852_INS [dm3] 2L_6787852_INS [dm6]	C	CC	5.750e^-4	1	UPSTREAM nrv1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	1316693	2L_1316693_SNP [dm3] 2L_1316693_SNP [dm6]	A	G	5.774e^-4	1	INTERGENIC
3R	21568900	3R_21568900_SNP [dm3] 3R_25743178_SNP [dm6]	T	C	5.788e^-4	1	INTRON LpR1
2R	21082297	2R_21082297_DEL [dm3] 2R_25194774_DEL [dm6]	TTTCCAAATTCTGTAAACGT...	AGTGGA	5.802e^-4	1	INTRON CG9380
3R	10172084	3R_10172084_SNP [dm3] 3R_14346362_SNP [dm6]	T	C	5.834e^-4	1	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19737996	2R_19737996_SNP [dm3] 2R_23850473_SNP [dm6]	C	A	5.850e^-4	1	UPSTREAM eIF6 INTRON ytr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3L	12110037	3L_12110037_SNP [dm3] 3L_12116937_SNP [dm6]	G	A	5.851e^-4	1	SYNONYMOUS_CODING l_3_j2D3	TF binding site BDTNP1_TFBS_dl
X	5445468	X_5445468_SNP [dm3] X_5551435_SNP [dm6]	C	T	5.875e^-4	1	INTRON Vsx2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	5853949	3R_5853949_SNP [dm3] 3R_10028227_SNP [dm6]	G	A	5.877e^-4	1	INTRON Mical
2R	19047586	2R_19047586_SNP [dm3] 2R_23160063_SNP [dm6]	C	T	5.881e^-4	1	SYNONYMOUS_CODING CG9899
3L	4671389	3L_4671389_SNP [dm3] 3L_4671389_SNP [dm6]	T	G	5.887e^-4	1	INTRON axo
X	3080599	X_3080599_SNP [dm3] X_3186566_SNP [dm6]	A	T	5.889e^-4	1	INTRON dnc
2L	4196350	2L_4196350_SNP [dm3] 2L_4196350_SNP [dm6]	G	C	5.894e^-4	1	INTRON CG3714	TF binding site mE1_TFBS_inv
3L	5056589	3L_5056589_SNP [dm3] 3L_5056589_SNP [dm6]	A	T	5.897e^-4	1	INTRON Con
X	651627	X_651627_SNP [dm3] X_757594_SNP [dm6]	C	T	5.907e^-4	1	INTRON CG5254
X	651633	X_651633_SNP [dm3] X_757600_SNP [dm6]	T	C	5.907e^-4	1	INTRON CG5254
X	651634	X_651634_DEL [dm3] X_757601_DEL [dm6]	ACATA	A	5.907e^-4	1	INTRON CG5254
3R	11871501	3R_11871501_SNP [dm3] 3R_16045779_SNP [dm6]	T	C	5.912e^-4	1	DOWNSTREAM CG10264 & 1 other INTRON CG10407
3R	11871553	3R_11871553_SNP [dm3] 3R_16045831_SNP [dm6]	G	A	5.912e^-4	1	NON_SYNONYMOUS_CODING CG10407 DOWNSTREAM CG10264 & 1 other
3R	11871572	3R_11871572_SNP [dm3] 3R_16045850_SNP [dm6]	G	C	5.912e^-4	1	NON_SYNONYMOUS_CODING CG10407 DOWNSTREAM ird5
3L	16985657	3L_16985657_SNP [dm3] 3L_16992557_SNP [dm6]	A	G	5.913e^-4	1	SPLICE_SITE_REGION Exn INTRON Exn	TF binding site mE1_TFBS_chinmo
3R	19882854	3R_19882854_DEL [dm3] 3R_24057132_DEL [dm6]	TGAACTTGGGTGCGT...	T	5.914e^-4	1	UTR_5_PRIME Hsp68	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_ttk
X	2753707	X_2753707_INS [dm3] X_2859674_INS [dm6]	G	TCT	5.916e^-4	1	INTRON kirre
2L	6535592	2L_6535592_SNP [dm3] 2L_6535592_SNP [dm6]	C	T	5.921e^-4	1	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	14549991	2R_14549991_SNP [dm3] 2R_18662486_SNP [dm6]	C	A	5.923e^-4	1	UPSTREAM Gint3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7111490	3L_7111490_SNP [dm3] 3L_7118390_SNP [dm6]	A	G	5.938e^-4	1	SYNONYMOUS_CODING form3	TF binding site mE1_TFBS_chinmo
2R	17610994	2R_17610994_SNP [dm3] 2R_21723489_SNP [dm6]	C	A	5.940e^-4	1	SYNONYMOUS_CODING LBR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	13201988	X_13201988_SNP [dm3] X_13307955_SNP [dm6]	C	A	5.953e^-4	1	DOWNSTREAM CR45018 INTRON IP3K2 EXON CR45018
X	13201989	X_13201989_SNP [dm3] X_13307956_SNP [dm6]	G	C	5.953e^-4	1	DOWNSTREAM CR45018 INTRON IP3K2 EXON CR45018
3L	3923797	3L_3923797_SNP [dm3] 3L_3923797_SNP [dm6]	A	C	5.962e^-4	1	INTRON Eip63F-1
2R	2997155	2R_2997155_SNP [dm3] 2R_7109650_SNP [dm6]	T	A	5.971e^-4	1	INTRON esn	TF binding site mE1_TFBS_sens
2R	14795903	2R_14795903_SNP [dm3] 2R_18908398_SNP [dm6]	A	C	5.993e^-4	1	DOWNSTREAM Vha100-3 INTRON sano
3R	13962362	3R_13962362_SNP [dm3] 3R_18136640_SNP [dm6]	A	T	6.010e^-4	1	INTERGENIC
X	3435500	X_3435500_SNP [dm3] X_3541467_SNP [dm6]	G	T	6.021e^-4	1	INTRON CG32791
3L	5482250	3L_5482250_SNP [dm3] 3L_5489150_SNP [dm6]	T	C	6.027e^-4	1	INTERGENIC
2R	12700082	2R_12700082_SNP [dm3] 2R_16812577_SNP [dm6]	C	T	6.030e^-4	1	EXON CR44379
X	14529624	X_14529624_SNP [dm3] X_14635591_SNP [dm6]	G	A	6.030e^-4	1	INTRON NetA
3R	9822562	3R_9822562_SNP [dm3] 3R_13996840_SNP [dm6]	A	C	6.038e^-4	1	INTRON rdx
3L	16985677	3L_16985677_SNP [dm3] 3L_16992577_SNP [dm6]	G	A	6.068e^-4	1	INTRON Exn	TF binding site mE1_TFBS_chinmo
3L	16985690	3L_16985690_SNP [dm3] 3L_16992590_SNP [dm6]	T	A	6.068e^-4	1	INTRON Exn	TF binding site mE1_TFBS_chinmo
2R	12669730	2R_12669730_SNP [dm3] 2R_16782225_SNP [dm6]	C	T	6.101e^-4	1	SYNONYMOUS_CODING resilin	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	19854855	3R_19854855_SNP [dm3] 3R_24029133_SNP [dm6]	T	C	6.115e^-4	1	INTRON KrT95D
3R	19854859	3R_19854859_SNP [dm3] 3R_24029137_SNP [dm6]	C	T	6.115e^-4	1	INTRON KrT95D
3L	12705369	3L_12705369_SNP [dm3] 3L_12712269_SNP [dm6]	G	C	6.117e^-4	1	INTERGENIC
2L	10091948	2L_10091948_SNP [dm3] 2L_10091948_SNP [dm6]	A	G	6.118e^-4	1	SYNONYMOUS_CODING CG13133 INTRON CG44153	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3222013	2L_3222013_SNP [dm3] 2L_3222013_SNP [dm6]	A	C	6.121e^-4	1	INTERGENIC
2L	1995740	2L_1995740_SNP [dm3] 2L_1995740_SNP [dm6]	C	T	6.162e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_sna
2R	13403231	2R_13403231_SNP [dm3] 2R_17515726_SNP [dm6]	C	A	6.197e^-4	1	NON_SYNONYMOUS_CODING CG4853
2L	7216950	2L_7216950_SNP [dm3] 2L_7216950_SNP [dm6]	C	A	6.242e^-4	1	INTRON CG13784	TF binding site BDTNP1_TFBS_Med
3R	2276295	3R_2276295_SNP [dm3] 3R_6450573_SNP [dm6]	G	A	6.243e^-4	1	UTR_3_PRIME CG9727 DOWNSTREAM CG9727
2L	2000818	2L_2000818_SNP [dm3] 2L_2000818_SNP [dm6]	G	T	6.251e^-4	1	INTRON CG33543 EXON CR43464
3L	4243503	3L_4243503_SNP [dm3] 3L_4243503_SNP [dm6]	C	T	6.253e^-4	1	SYNONYMOUS_CODING pav DOWNSTREAM CG14997	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	11659305	2L_11659305_SNP [dm3] 2L_11659305_SNP [dm6]	G	A	6.261e^-4	1	DOWNSTREAM CR44497 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	13342566	X_13342566_SNP [dm3] X_13448533_SNP [dm6]	A	G	6.267e^-4	1	INTRON Neto
X	8347737	X_8347737_SNP [dm3] X_8453704_SNP [dm6]	G	T	6.269e^-4	1	INTRON org-1
2L	15754446	2L_15754446_SNP [dm3] 2L_15754446_SNP [dm6]	C	T	6.288e^-4	1	SYNONYMOUS_CODING l_2_35Df	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	1721280	X_1721280_SNP [dm3] X_1827247_SNP [dm6]	A	G	6.290e^-4	1	UPSTREAM CG42666 INTRON CG42666	transposable element FlyBase
3L	1380738	3L_1380738_SNP [dm3] 3L_1380738_SNP [dm6]	C	T	6.294e^-4	1	DOWNSTREAM tRNA:CR32330 & 2 others INTRON Ptp61F & 1 other	TF binding site BDTNP1_TFBS_dl
2L	13114815	2L_13114815_SNP [dm3] 2L_13114815_SNP [dm6]	G	T	6.294e^-4	1	INTERGENIC
X	18813791	X_18813791_SNP [dm3] X_18919758_SNP [dm6]	A	T	6.297e^-4	1	INTERGENIC
X	3735212	X_3735212_SNP [dm3] X_3841179_SNP [dm6]	A	G	6.303e^-4	1	INTRON ec	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2R	21019891	2R_21019891_SNP [dm3] 2R_25132368_SNP [dm6]	T	G	6.305e^-4	1	INTRON lov	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	2501875	3R_2501875_SNP [dm3] 3R_6676153_SNP [dm6]	A	G	6.315e^-4	1	INTRON lab	TF binding site mE1_TFBS_HSA
2R	2925219	2R_2925219_SNP [dm3] 2R_7037714_SNP [dm6]	C	T	6.319e^-4	1	UTR_5_PRIME CG33914 DOWNSTREAM Tsp42Ei
2L	2000671	2L_2000671_SNP [dm3] 2L_2000671_SNP [dm6]	C	A	6.320e^-4	1	INTRON CG33543 EXON CR43464
2L	2980653	2L_2980653_SNP [dm3] 2L_2980653_SNP [dm6]	T	C	6.321e^-4	1	SYNONYMOUS_CODING Chd1	TF binding site mE1_TFBS_cad
2L	4026980	2L_4026980_SNP [dm3] 2L_4026980_SNP [dm6]	G	A	6.331e^-4	1	INTERGENIC
2L	16010713	2L_16010713_SNP [dm3] 2L_16010713_SNP [dm6]	A	C	6.337e^-4	1	INTRON beat-Ic
3R	10580417	3R_10580417_SNP [dm3] 3R_14754695_SNP [dm6]	C	T	6.339e^-4	1	UPSTREAM CG7362 INTRON jvl
3L	1009768	3L_1009768_SNP [dm3] 3L_1009768_SNP [dm6]	T	G	6.359e^-4	1	INTRON trio
2R	16539194	2R_16539194_SNP [dm3] 2R_20651689_SNP [dm6]	C	T	6.362e^-4	1	DOWNSTREAM CG16799 INTRON Lrt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	9565195	X_9565195_SNP [dm3] X_9671162_SNP [dm6]	G	A	6.366e^-4	1	SYNONYMOUS_CODING nej	TF binding site mE1_TFBS_chinmo
3R	5362503	3R_5362503_SNP [dm3] 3R_9536781_SNP [dm6]	A	G	6.380e^-4	1	UTR_3_PRIME mura
2L	8317599	2L_8317599_SNP [dm3] 2L_8317599_SNP [dm6]	G	T	6.380e^-4	1	DOWNSTREAM CG7806 INTRON mtsh
2L	11981744	2L_11981744_SNP [dm3] 2L_11981744_SNP [dm6]	A	T	6.388e^-4	1	INTRON CG16965
2L	11981780	2L_11981780_SNP [dm3] 2L_11981780_SNP [dm6]	T	A	6.388e^-4	1	INTRON CG16965
2L	19145934	2L_19145934_DEL [dm3] 2L_19145934_DEL [dm6]	TT	T	6.409e^-4	1	INTRON brat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16539204	2R_16539204_SNP [dm3] 2R_20651699_SNP [dm6]	G	A	6.464e^-4	1	DOWNSTREAM CG16799 INTRON Lrt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3432604	2L_3432604_SNP [dm3] 2L_3432604_SNP [dm6]	T	A	6.470e^-4	1	INTERGENIC
2L	7763643	2L_7763643_SNP [dm3] 2L_7763643_SNP [dm6]	A	G	6.472e^-4	1	SYNONYMOUS_CODING CG7196 UPSTREAM CG7196
X	6549506	X_6549506_SNP [dm3] X_6655473_SNP [dm6]	A	G	6.478e^-4	1	SYNONYMOUS_CODING l_1_G0148	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20103360	3R_20103360_SNP [dm3] 3R_24277638_SNP [dm6]	C	A	6.479e^-4	1	NON_SYNONYMOUS_CODING Orct	TF binding site mE1_TFBS_chinmo
3L	5440408	3L_5440408_SNP [dm3] 3L_5447308_SNP [dm6]	A	T	6.488e^-4	1	INTERGENIC
2R	13398204	2R_13398204_SNP [dm3] 2R_17510699_SNP [dm6]	T	A	6.500e^-4	1	UTR_3_PRIME CG34193 UPSTREAM CG4847
2L	5266702	2L_5266702_SNP [dm3] 2L_5266702_SNP [dm6]	A	C	6.510e^-4	1	SYNONYMOUS_CODING Cyp4ac2 DOWNSTREAM Cyp4ac1 INTRON tkv
2R	14386210	2R_14386210_SNP [dm3] 2R_18498705_SNP [dm6]	A	C	6.518e^-4	1	UPSTREAM CG30116 INTERGENIC
3L	19474031	3L_19474031_DEL [dm3] 3L_19480931_DEL [dm6]	CGA	C	6.519e^-4	1	INTERGENIC
3R	19882850	3R_19882850_SNP [dm3] 3R_24057128_SNP [dm6]	A	T	6.522e^-4	1	UTR_5_PRIME Hsp68	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_ttk
X	13480138	X_13480138_SNP [dm3] X_13586105_SNP [dm6]	C	A	6.532e^-4	1	INTRON Tango13
X	13480140	X_13480140_SNP [dm3] X_13586107_SNP [dm6]	T	C	6.532e^-4	1	INTRON Tango13
2R	18153584	2R_18153584_SNP [dm3] 2R_22266079_SNP [dm6]	A	G	6.536e^-4	1	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2383614	3L_2383614_SNP [dm3] 3L_2383614_SNP [dm6]	C	T	6.552e^-4	1	INTRON CG45186
2L	6535219	2L_6535219_SNP [dm3] 2L_6535219_SNP [dm6]	C	A	6.574e^-4	1	INTRON eya	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	15944859	3L_15944859_DEL [dm3] 3L_15951759_DEL [dm6]	AACATTATGACGAGTTA...	A	6.584e^-4	1	INTRON Pka-C3
2R	15757668	2R_15757668_MNP [dm3] 2R_19870163_MNP [dm6]	CAT	ACA	6.587e^-4	1	DOWNSTREAM CR44460 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_inv mE1_TFBS_sens
2R	15757673	2R_15757673_SNP [dm3] 2R_19870168_SNP [dm6]	G	C	6.587e^-4	1	DOWNSTREAM CR44460 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_inv mE1_TFBS_sens
2L	4009771	2L_4009771_SNP [dm3] 2L_4009771_SNP [dm6]	G	T	6.589e^-4	1	DOWNSTREAM CG43774 INTERGENIC
3L	8978455	3L_8978455_SNP [dm3] 3L_8985355_SNP [dm6]	G	A	6.600e^-4	1	INTRON Galk	TF binding site BDTNP1_TFBS_dl
X	14494660	X_14494660_SNP [dm3] X_14600627_SNP [dm6]	T	C	6.602e^-4	1	INTRON CG9413
2R	12827918	2R_12827918_SNP [dm3] 2R_16940413_SNP [dm6]	T	C	6.609e^-4	1	INTRON Pkc53E
2L	2784024	2L_2784024_SNP [dm3] 2L_2784024_SNP [dm6]	G	A	6.615e^-4	1	UTR_3_PRIME Syt1 INTRON Syt1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14992644	2R_14992644_DEL [dm3] 2R_19105139_DEL [dm6]	AG	A	6.621e^-4	1	INTRON 5-HT1A
3R	11870917	3R_11870917_SNP [dm3] 3R_16045195_SNP [dm6]	G	A	6.628e^-4	1	DOWNSTREAM CG10264 INTRON CG10407
3R	16195660	3R_16195660_SNP [dm3] 3R_20369938_SNP [dm6]	T	G	6.631e^-4	1	INTERGENIC
3R	16195662	3R_16195662_SNP [dm3] 3R_20369940_SNP [dm6]	T	G	6.631e^-4	1	INTERGENIC
X	5001081	X_5001081_SNP [dm3] X_5107048_SNP [dm6]	G	A	6.654e^-4	1	INTRON rg & 1 other
3R	17087466	3R_17087466_SNP [dm3] 3R_21261744_SNP [dm6]	C	T	6.656e^-4	1	INTRON ETHR	TF binding site mE1_TFBS_cad
2L	6271046	2L_6271046_SNP [dm3] 2L_6271046_SNP [dm6]	C	T	6.665e^-4	1	INTRON Ddr EXON CR42735
2R	11439891	2R_11439891_SNP [dm3] 2R_15552386_SNP [dm6]	A	C	6.666e^-4	1	INTERGENIC
3R	19834051	3R_19834051_SNP [dm3] 3R_24008329_SNP [dm6]	G	A	6.684e^-4	1	INTRON KrT95D	TF binding site BDTNP1_TFBS_twi
X	656288	X_656288_SNP [dm3] X_762255_SNP [dm6]	G	T	6.685e^-4	1	DOWNSTREAM RpL22 & 3 others EXON CR44965
2L	8793874	2L_8793874_DEL [dm3] 2L_8793874_DEL [dm6]	TT	T	6.687e^-4	1	INTERGENIC
2L	8793898	2L_8793898_SNP [dm3] 2L_8793898_SNP [dm6]	T	A	6.687e^-4	1	INTERGENIC
3L	5222462	3L_5222462_SNP [dm3] 3L_5229362_SNP [dm6]	C	T	6.687e^-4	1	INTRON shep
3R	17817059	3R_17817059_SNP [dm3] 3R_21991337_SNP [dm6]	A	T	6.693e^-4	1	INTRON Eip93F
X	1732593	X_1732593_SNP [dm3] X_1838560_SNP [dm6]	T	A	6.698e^-4	1	INTRON CG42666
3L	11787304	3L_11787304_SNP [dm3] 3L_11794204_SNP [dm6]	C	A	6.698e^-4	1	UPSTREAM CG5964 INTRON CG10907	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11787307	3L_11787307_SNP [dm3] 3L_11794207_SNP [dm6]	A	G	6.698e^-4	1	UPSTREAM CG5964 INTRON CG10907	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21539769	3R_21539769_SNP [dm3] 3R_25714047_SNP [dm6]	C	T	6.708e^-4	1	INTRON LpR2
3L	8300051	3L_8300051_SNP [dm3] 3L_8306951_SNP [dm6]	T	A	6.727e^-4	1	SYNONYMOUS_CODING Gr66a DOWNSTREAM BI-1
2L	9727920	2L_9727920_SNP [dm3] 2L_9727920_SNP [dm6]	T	G	6.734e^-4	1	INTRON Nckx30C
3L	15870554	3L_15870554_SNP [dm3] 3L_15877454_SNP [dm6]	G	A	6.735e^-4	1	UPSTREAM CR44051 INTRON pHCl
3L	14229750	3L_14229750_SNP [dm3] 3L_14236650_SNP [dm6]	G	T	6.749e^-4	1	START_GAINED CG7906 UTR_5_PRIME CG7906 UPSTREAM CG34244 & 1 other	TF binding site mE1_TFBS_inv
2L	9888878	2L_9888878_SNP [dm3] 2L_9888878_SNP [dm6]	G	T	6.750e^-4	1	SYNONYMOUS_CODING FKBP59	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14992536	2R_14992536_SNP [dm3] 2R_19105031_SNP [dm6]	G	A	6.755e^-4	1	INTRON 5-HT1A
X	16071254	X_16071254_SNP [dm3] X_16177221_SNP [dm6]	A	C	6.771e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	4198308	2L_4198308_SNP [dm3] 2L_4198308_SNP [dm6]	A	G	6.789e^-4	1	UPSTREAM CG3714 DOWNSTREAM ft INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	6786603	2L_6786603_SNP [dm3] 2L_6786603_SNP [dm6]	G	A	6.795e^-4	1	UTR_5_PRIME nrv1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	6787025	2L_6787025_SNP [dm3] 2L_6787025_SNP [dm6]	A	T	6.795e^-4	1	UPSTREAM nrv1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	6787231	2L_6787231_SNP [dm3] 2L_6787231_SNP [dm6]	G	A	6.795e^-4	1	UPSTREAM nrv1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	11447221	2R_11447221_SNP [dm3] 2R_15559716_SNP [dm6]	C	A	6.798e^-4	1	SYNONYMOUS_CODING CG12963 UPSTREAM CG12963 INTRON CG12963	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5879845	2L_5879845_SNP [dm3] 2L_5879845_SNP [dm6]	A	G	6.798e^-4	1	UPSTREAM rau INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	15945299	3L_15945299_SNP [dm3] 3L_15952199_SNP [dm6]	G	T	6.801e^-4	1	UTR_5_PRIME Pka-C3 INTRON Pka-C3	TF binding site BDTNP1_TFBS_dl
3R	14162854	3R_14162854_SNP [dm3] 3R_18337132_SNP [dm6]	G	T	6.804e^-4	1	INTRON CG15803
X	15393282	X_15393282_SNP [dm3] X_15499249_SNP [dm6]	C	T	6.808e^-4	1	UTR_5_PRIME Gmap INTRON Gmap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7775941	3L_7775941_SNP [dm3] 3L_7782841_SNP [dm6]	G	C	6.813e^-4	1	INTRON CG32369
X	7973034	X_7973034_SNP [dm3] X_8079001_SNP [dm6]	C	T	6.826e^-4	1	DOWNSTREAM CG1571 INTRON CG2254
3L	12645958	3L_12645958_SNP [dm3] 3L_12652858_SNP [dm6]	C	A	6.826e^-4	1	EXON CR43431	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8979468	3L_8979468_SNP [dm3] 3L_8986368_SNP [dm6]	T	C	6.839e^-4	1	UPSTREAM Galk & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Ubx
3L	16408082	3L_16408082_SNP [dm3] 3L_16414982_SNP [dm6]	C	T	6.842e^-4	1	DOWNSTREAM CG4573 INTRON TMS1
2R	18639949	2R_18639949_SNP [dm3] 2R_22752444_SNP [dm6]	T	G	6.849e^-4	1	INTRON CG42260
2L	6537212	2L_6537212_DEL [dm3] 2L_6537212_DEL [dm6]	CTCTCC	C	6.855e^-4	1	INTRON eya	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	6537237	2L_6537237_SNP [dm3] 2L_6537237_SNP [dm6]	T	A	6.855e^-4	1	INTRON eya	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	11302374	3R_11302374_SNP [dm3] 3R_15476652_SNP [dm6]	G	A	6.861e^-4	1	UPSTREAM AdamTS-A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	6202610	X_6202610_SNP [dm3] X_6308577_SNP [dm6]	T	G	6.870e^-4	1	UPSTREAM CG15894 INTERGENIC
3L	8849048	3L_8849048_SNP [dm3] 3L_8855948_SNP [dm6]	T	C	6.878e^-4	1	INTRON dally
2R	16892451	2R_16892451_SNP [dm3] 2R_21004946_SNP [dm6]	G	T	6.881e^-4	1	NON_SYNONYMOUS_CODING CG10543	TF binding site mE1_TFBS_cad
2L	6832188	2L_6832188_SNP [dm3] 2L_6832188_SNP [dm6]	G	A	6.886e^-4	1	SYNONYMOUS_CODING sens-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4196979	2L_4196979_SNP [dm3] 2L_4196979_SNP [dm6]	T	A	6.887e^-4	1	INTRON CG3714	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sbb
X	13253528	X_13253528_SNP [dm3] X_13359495_SNP [dm6]	A	G	6.901e^-4	1	INTRON Syt12
2L	9070819	2L_9070819_SNP [dm3] 2L_9070819_SNP [dm6]	T	A	6.902e^-4	1	UPSTREAM CR44483 INTRON CG31708
3R	13551153	3R_13551153_SNP [dm3] 3R_17725431_SNP [dm6]	C	T	6.902e^-4	1	UPSTREAM Lgr1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_sna
3R	17908662	3R_17908662_SNP [dm3] 3R_22082940_SNP [dm6]	C	A	6.907e^-4	1	SYNONYMOUS_CODING CG13408
3R	17281960	3R_17281960_SNP [dm3] 3R_21456238_SNP [dm6]	T	C	6.907e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	14172480	3R_14172480_SNP [dm3] 3R_18346758_SNP [dm6]	A	T	6.928e^-4	1	INTRON CG15803
2L	10278154	2L_10278154_SNP [dm3] 2L_10278154_SNP [dm6]	T	G	6.934e^-4	1	UPSTREAM Utx DOWNSTREAM CG34043 INTRON Utx	TF binding site BDTNP1_TFBS_dl
3L	18133434	3L_18133434_SNP [dm3] 3L_18140334_SNP [dm6]	G	A	6.941e^-4	1	INTRON gk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	18133654	3L_18133654_SNP [dm3] 3L_18140554_SNP [dm6]	A	G	6.941e^-4	1	INTRON gk	TF binding site BDTNP1_TFBS_dl
2L	10358018	2L_10358018_SNP [dm3] 2L_10358018_SNP [dm6]	G	A	6.942e^-4	1	UTR_3_PRIME CG5045 DOWNSTREAM Cand1 & 1 other
2L	1321006	2L_1321006_SNP [dm3] 2L_1321006_SNP [dm6]	G	T	6.945e^-4	1	INTERGENIC
2R	2925476	2R_2925476_SNP [dm3] 2R_7037971_SNP [dm6]	C	T	6.948e^-4	1	UTR_5_PRIME CG33914 UPSTREAM CG33914
2R	1099074	2R_1099074_SNP [dm3] 2R_5211569_SNP [dm6]	C	T	6.952e^-4	1	INTRON Nipped-A
3R	17209042	3R_17209042_DEL [dm3] 3R_21383320_DEL [dm6]	CCGTCTGCCTGTCCGTATGA...	C	6.956e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
X	13370787	X_13370787_SNP [dm3] X_13476754_SNP [dm6]	C	T	6.968e^-4	1	INTRON Neto
3R	12715934	3R_12715934_SNP [dm3] 3R_16890212_SNP [dm6]	A	C	6.970e^-4	1	INTRON iab-8	TF binding site mE1_TFBS_cad
2R	6754158	2R_6754158_SNP [dm3] 2R_10866653_SNP [dm6]	A	G	6.978e^-4	1	INTRON CG30015
2R	13793044	2R_13793044_SNP [dm3] 2R_17905539_SNP [dm6]	G	A	6.979e^-4	1	INTRON Elk
2L	10690989	2L_10690989_SNP [dm3] 2L_10690989_SNP [dm6]	G	A	6.984e^-4	1	INTERGENIC
2L	10690991	2L_10690991_SNP [dm3] 2L_10690991_SNP [dm6]	C	T	6.984e^-4	1	INTERGENIC
2L	7209431	2L_7209431_SNP [dm3] 2L_7209431_SNP [dm6]	C	T	6.997e^-4	1	SYNONYMOUS_CODING CG13784
3L	2194008	3L_2194008_SNP [dm3] 3L_2194008_SNP [dm6]	C	T	7.011e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
X	20235481	X_20235481_INS [dm3] X_20364454_INS [dm6]	T	TTTGGCT	7.014e^-4	1	INTERGENIC
3L	16060084	3L_16060084_SNP [dm3] 3L_16066984_SNP [dm6]	A	C	7.019e^-4	1	INTRON Mbs
2L	6788149	2L_6788149_SNP [dm3] 2L_6788149_SNP [dm6]	A	T	7.025e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	13465330	3R_13465330_SNP [dm3] 3R_17639608_SNP [dm6]	G	T	7.025e^-4	1	INTRON CG43175 EXON CR45222
2L	7080232	2L_7080232_INS [dm3] 2L_7080232_INS [dm6]	C	GTTGG	7.053e^-4	1	UPSTREAM CR44611 INTRON Pvf2
3L	16987665	3L_16987665_INS [dm3] 3L_16994565_INS [dm6]	A	AGGATCA	7.056e^-4	1	DOWNSTREAM CG3764 & 1 other INTERGENIC
2L	13961008	2L_13961008_SNP [dm3] 2L_13961008_SNP [dm6]	A	G	7.071e^-4	1	SPLICE_SITE_REGION NimA INTRON NimA	TF binding site mE1_TFBS_chinmo
2L	10691016	2L_10691016_SNP [dm3] 2L_10691016_SNP [dm6]	G	T	7.090e^-4	1	INTERGENIC
2R	21067224	2R_21067224_SNP [dm3] 2R_25179701_SNP [dm6]	A	G	7.092e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4030906	3L_4030906_SNP [dm3] 3L_4030906_SNP [dm6]	A	C	7.096e^-4	1	SYNONYMOUS_CODING Gr64c UTR_3_PRIME Gr64b	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17254614	2R_17254614_SNP [dm3] 2R_21367109_SNP [dm6]	T	A	7.097e^-4	1	INTRON cv-2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18363429	3L_18363429_SNP [dm3] 3L_18370329_SNP [dm6]	A	G	7.103e^-4	1	INTERGENIC
2L	10416904	2L_10416904_DEL [dm3] 2L_10416904_DEL [dm6]	GCATAT	G	7.106e^-4	1	INTRON Klp31E	TF binding site BDTNP1_TFBS_twi
X	4467423	X_4467423_DEL [dm3] X_4573390_DEL [dm6]	GAACTG	G	7.107e^-4	1	INTRON CR32773
2L	5825926	2L_5825926_SNP [dm3] 2L_5825926_SNP [dm6]	T	G	7.124e^-4	1	INTRON TrissinR
3R	11935299	3R_11935299_SNP [dm3] 3R_16109577_SNP [dm6]	G	T	7.125e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15082956	2R_15082956_SNP [dm3] 2R_19195451_SNP [dm6]	C	T	7.127e^-4	1	INTRON hppy
3R	17259285	3R_17259285_SNP [dm3] 3R_21433563_SNP [dm6]	G	C	7.148e^-4	1	SYNONYMOUS_CODING lbl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2L	3142274	2L_3142274_SNP [dm3] 2L_3142274_SNP [dm6]	T	C	7.167e^-4	1	INTRON toc
3R	22523172	3R_22523172_SNP [dm3] 3R_26697450_SNP [dm6]	G	C	7.169e^-4	1	DOWNSTREAM amon INTERGENIC
2R	17237225	2R_17237225_SNP [dm3] 2R_21349720_SNP [dm6]	A	G	7.196e^-4	1	SYNONYMOUS_CODING CG17974
3R	11554440	3R_11554440_DEL [dm3] 3R_15728718_DEL [dm6]	CAATC	C	7.199e^-4	1	INTERGENIC
X	16870893	X_16870893_SNP [dm3] X_16976860_SNP [dm6]	T	A	7.206e^-4	1	INTRON CG45002
2L	7663187	2L_7663187_SNP [dm3] 2L_7663187_SNP [dm6]	A	G	7.207e^-4	1	INTRON Slob
3L	1611609	3L_1611609_SNP [dm3] 3L_1611609_SNP [dm6]	C	T	7.207e^-4	1	NON_SYNONYMOUS_CODING CG12105 INTRON CG33791 & 1 other	TF binding site mE1_TFBS_chinmo
X	6690469	X_6690469_DEL [dm3] X_6796436_DEL [dm6]	TAAT	T	7.225e^-4	1	UPSTREAM C3G INTRON C3G
X	19925506	X_19925506_SNP [dm3] X_20031473_SNP [dm6]	T	C	7.228e^-4	1	INTRON Dop2R	TF binding site mE1_TFBS_HSA
3R	16195658	3R_16195658_SNP [dm3] 3R_20369936_SNP [dm6]	G	T	7.230e^-4	1	INTERGENIC
3R	25441345	3R_25441345_SNP [dm3] 3R_29615623_SNP [dm6]	G	A	7.246e^-4	1	INTRON alph
3L	18546987	3L_18546987_SNP [dm3] 3L_18553887_SNP [dm6]	T	C	7.262e^-4	1	INTERGENIC
2R	16569563	2R_16569563_SNP [dm3] 2R_20682058_SNP [dm6]	G	C	7.273e^-4	1	INTERGENIC
2L	9727744	2L_9727744_SNP [dm3] 2L_9727744_SNP [dm6]	C	T	7.273e^-4	1	INTRON Nckx30C
3L	614629	3L_614629_SNP [dm3] 3L_614629_SNP [dm6]	A	T	7.280e^-4	1	DOWNSTREAM CR42719 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	18133699	3L_18133699_SNP [dm3] 3L_18140599_SNP [dm6]	T	C	7.284e^-4	1	INTRON gk	TF binding site BDTNP1_TFBS_dl
3L	18133902	3L_18133902_SNP [dm3] 3L_18140802_SNP [dm6]	G	C	7.284e^-4	1	INTRON gk
2L	3101569	2L_3101569_SNP [dm3] 2L_3101569_SNP [dm6]	C	T	7.285e^-4	1	INTRON toc
2R	14511836	2R_14511836_SNP [dm3] 2R_18624331_SNP [dm6]	C	T	7.286e^-4	1	SYNONYMOUS_CODING Atg7 UPSTREAM Sec6 INTRON Atg7	TF binding site mE1_TFBS_sens
3R	17918822	3R_17918822_SNP [dm3] 3R_22093100_SNP [dm6]	T	C	7.287e^-4	1	INTRON CG5778
2L	2859726	2L_2859726_SNP [dm3] 2L_2859726_SNP [dm6]	G	A	7.288e^-4	1	INTRON CG2991
2L	19928478	2L_19928478_DEL [dm3] 2L_19928478_DEL [dm6]	GGGTGT	G	7.293e^-4	1	INTRON sick
3L	6713431	3L_6713431_SNP [dm3] 3L_6720331_SNP [dm6]	T	G	7.301e^-4	1	UPSTREAM ple INTERGENIC	regulatory region REDfly_CRMs
3R	11351224	3R_11351224_SNP [dm3] 3R_15525502_SNP [dm6]	T	G	7.306e^-4	1	INTERGENIC
3L	5125878	3L_5125878_DEL [dm3] 3L_5132778_DEL [dm6]	AT	A	7.330e^-4	1	DOWNSTREAM CG15213 & 1 other INTERGENIC
3R	20386246	3R_20386246_SNP [dm3] 3R_24560524_SNP [dm6]	G	T	7.331e^-4	1	STOP_GAINED CG13624 INTRON CG13624	TF binding site mE1_TFBS_cad
3L	2625790	3L_2625790_SNP [dm3] 3L_2625790_SNP [dm6]	T	G	7.338e^-4	1	INTRON Pxn
2L	8412752	2L_8412752_DEL [dm3] 2L_8412752_DEL [dm6]	AATA	A	7.350e^-4	1	UTR_3_PRIME CG13398 UPSTREAM CG13397
2L	8613181	2L_8613181_SNP [dm3] 2L_8613181_SNP [dm6]	C	T	7.351e^-4	1	INTRON Sema-1a
2R	13779630	2R_13779630_SNP [dm3] 2R_17892125_SNP [dm6]	T	A	7.362e^-4	1	INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	6788070	2L_6788070_SNP [dm3] 2L_6788070_SNP [dm6]	C	T	7.370e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	12044760	2R_12044760_SNP [dm3] 2R_16157255_SNP [dm6]	A	C	7.377e^-4	1	DOWNSTREAM CG10734 INTRON lbk
2R	19174571	2R_19174571_SNP [dm3] 2R_23287048_SNP [dm6]	T	G	7.378e^-4	1	INTERGENIC
3R	10460284	3R_10460284_SNP [dm3] 3R_14634562_SNP [dm6]	A	G	7.392e^-4	1	INTRON CG7886 & 1 other	TF binding site mE1_TFBS_inv
2R	15757334	2R_15757334_SNP [dm3] 2R_19869829_SNP [dm6]	A	G	7.398e^-4	1	DOWNSTREAM CR44460 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_inv
3R	19488616	3R_19488616_SNP [dm3] 3R_23662894_SNP [dm6]	G	T	7.415e^-4	1	INTRON CG31145	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	2000644	2L_2000644_SNP [dm3] 2L_2000644_SNP [dm6]	T	C	7.419e^-4	1	INTRON CG33543 EXON CR43464
3L	1261966	3L_1261966_SNP [dm3] 3L_1261966_SNP [dm6]	G	T	7.426e^-4	1	SYNONYMOUS_CODING CG9134
2R	11418240	2R_11418240_SNP [dm3] 2R_15530735_SNP [dm6]	T	C	7.438e^-4	1	INTRON Khc-73	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	19692782	3R_19692782_SNP [dm3] 3R_23867060_SNP [dm6]	T	A	7.441e^-4	1	INTRON Pli	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	7450562	2L_7450562_INS [dm3] 2L_7450562_INS [dm6]	A	AACTGTTGATACCCAGA...	7.444e^-4	1	UTR_5_PRIME santa-maria INTRON santa-maria
2R	13499899	2R_13499899_SNP [dm3] 2R_17612394_SNP [dm6]	A	T	7.445e^-4	1	INTRON CG10936
3L	10881206	3L_10881206_SNP [dm3] 3L_10888106_SNP [dm6]	A	T	7.451e^-4	1	INTERGENIC
X	20038808	X_20038808_SNP [dm3] X_20144775_SNP [dm6]	G	C	7.451e^-4	1	INTERGENIC
X	20038915	X_20038915_SNP [dm3] X_20144882_SNP [dm6]	C	G	7.451e^-4	1	INTERGENIC

Missing results

By genomic position
Variant impact
Gene name

pc_CN_Hobo_HS phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results