DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.539e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	3.5401	0.0599

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2403 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	18851129	X_18851129_INS [dm3] X_18957096_INS [dm6]	A	ACAAATATTG	1.113e^-6	0.669	INTRON CG43759
2R	12379912	2R_12379912_SNP [dm3] 2R_16492407_SNP [dm6]	T	C	1.891e^-6	0.669	SYNONYMOUS_CODING S-Lap8	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2866098	2L_2866098_SNP [dm3] 2L_2866098_SNP [dm6]	A	G	2.144e^-6	0.669	INTRON CG2991
3L	16037490	3L_16037490_SNP [dm3] 3L_16044390_SNP [dm6]	T	C	2.167e^-6	0.669	INTRON th	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
2L	6105874	2L_6105874_SNP [dm3] 2L_6105874_SNP [dm6]	T	C	2.233e^-6	0.669	INTRON stai
2L	1561541	2L_1561541_SNP [dm3] 2L_1561541_SNP [dm6]	T	A	2.462e^-6	0.669	INTRON haf
X	20396880	X_20396880_SNP [dm3] X_20525853_SNP [dm6]	G	A	3.762e^-6	0.669	UPSTREAM Tak1 INTERGENIC	TF binding site mE1_TFBS_zfh1
3L	3499847	3L_3499847_SNP [dm3] 3L_3499847_SNP [dm6]	G	T	5.327e^-6	0.669	INTRON CG42324
2L	4261013	2L_4261013_SNP [dm3] 2L_4261013_SNP [dm6]	T	C	5.776e^-6	0.669	INTRON CR44080
3L	12705144	3L_12705144_INS [dm3] 3L_12712044_INS [dm6]	T	TGAAATATA	6.159e^-6	0.669	INTERGENIC	TF binding site mE1_TFBS_D
3L	12705165	3L_12705165_DEL [dm3] 3L_12712065_DEL [dm6]	AG	A	6.159e^-6	0.669	INTERGENIC	TF binding site mE1_TFBS_D
3L	12705307	3L_12705307_SNP [dm3] 3L_12712207_SNP [dm6]	T	G	6.159e^-6	0.669	INTERGENIC
3L	12705308	3L_12705308_SNP [dm3] 3L_12712208_SNP [dm6]	T	A	6.159e^-6	0.669	INTERGENIC
2R	2397947	2R_2397947_SNP [dm3] 2R_6510442_SNP [dm6]	G	T	7.359e^-6	0.669	UPSTREAM CR45127 INTRON jing	TF binding site BDTNP1_TFBS_dl
3R	19211784	3R_19211784_SNP [dm3] 3R_23386062_SNP [dm6]	T	C	8.313e^-6	0.669	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	4635922	3L_4635922_SNP [dm3] 3L_4635922_SNP [dm6]	C	A	8.524e^-6	0.669	DOWNSTREAM axo INTRON axo	TF binding site mE1_TFBS_hkb
3L	2105093	3L_2105093_SNP [dm3] 3L_2105093_SNP [dm6]	G	C	9.361e^-6	0.669	INTRON sls	TF binding site mE1_TFBS_chinmo
2L	8583625	2L_8583625_SNP [dm3] 2L_8583625_SNP [dm6]	C	T	9.415e^-6	0.669	INTRON Sema-1a
3L	12705303	3L_12705303_INS [dm3] 3L_12712203_INS [dm6]	C	CCTT	9.651e^-6	0.669	INTERGENIC
3L	12705141	3L_12705141_INS [dm3] 3L_12712041_INS [dm6]	T	TA	9.854e^-6	0.669	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3L	12705146	3L_12705146_SNP [dm3] 3L_12712046_SNP [dm6]	G	A	9.854e^-6	0.669	INTERGENIC	TF binding site mE1_TFBS_D
3R	19250659	3R_19250659_SNP [dm3] 3R_23424937_SNP [dm6]	C	T	9.987e^-6	0.669	DOWNSTREAM CG43694 INTRON CG4374
2L	9087754	2L_9087754_SNP [dm3] 2L_9087754_SNP [dm6]	T	C	1.081e^-5	0.669	SYNONYMOUS_CODING Toll-4	TF binding site BDTNP1_TFBS_twi
2L	563223	2L_563223_SNP [dm3] 2L_563223_SNP [dm6]	T	C	1.118e^-5	0.669	START_GAINED CG11835 UTR_5_PRIME CG11835 UPSTREAM CG2794 INTRON CG11835	TF binding site mE1_TFBS_chinmo
2R	15208408	2R_15208408_SNP [dm3] 2R_19320903_SNP [dm6]	G	A	1.211e^-5	0.669	INTRON Rgk1
X	18842174	X_18842174_SNP [dm3] X_18948141_SNP [dm6]	C	G	1.244e^-5	0.669	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	2348113	2R_2348113_SNP [dm3] 2R_6460608_SNP [dm6]	C	A	1.318e^-5	0.669	INTERGENIC
X	12813552	X_12813552_SNP [dm3] X_12919519_SNP [dm6]	G	A	1.341e^-5	0.669	UTR_5_PRIME fne
2R	13552926	2R_13552926_SNP [dm3] 2R_17665421_SNP [dm6]	G	T	1.348e^-5	0.669	UPSTREAM eIF3-S8 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_Ubx
2L	22931363	2L_22931363_SNP [dm3] 2L_23038631_SNP [dm6]	T	G	1.364e^-5	0.669	INTERGENIC
2L	22446523	2L_22446523_DEL [dm3] 2L_22553791_DEL [dm6]	ATAGCCTGG	A	1.393e^-5	0.669	UTR_3_PRIME CG17493	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	2797921	2L_2797921_SNP [dm3] 2L_2797921_SNP [dm6]	T	G	1.412e^-5	0.669	INTRON Syt1 EXON CR43821	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	16037555	3L_16037555_SNP [dm3] 3L_16044455_SNP [dm6]	A	G	1.417e^-5	0.669	INTRON th	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
3L	3792170	3L_3792170_SNP [dm3] 3L_3792170_SNP [dm6]	A	G	1.531e^-5	0.669	DOWNSTREAM CG32266 INTRON CG32264
2R	6746413	2R_6746413_SNP [dm3] 2R_10858908_SNP [dm6]	A	G	1.619e^-5	0.669	UPSTREAM CR44302 INTRON CG30015
3L	12705311	3L_12705311_SNP [dm3] 3L_12712211_SNP [dm6]	A	G	1.625e^-5	0.669	INTERGENIC
3L	12705369	3L_12705369_SNP [dm3] 3L_12712269_SNP [dm6]	G	C	1.710e^-5	0.669	INTERGENIC
2L	9079208	2L_9079208_SNP [dm3] 2L_9079208_SNP [dm6]	T	A	1.730e^-5	0.669	INTERGENIC
2L	9079278	2L_9079278_SNP [dm3] 2L_9079278_SNP [dm6]	A	T	1.730e^-5	0.669	INTERGENIC
2L	9079121	2L_9079121_SNP [dm3] 2L_9079121_SNP [dm6]	C	T	1.790e^-5	0.669	INTERGENIC
X	16071254	X_16071254_SNP [dm3] X_16177221_SNP [dm6]	A	C	1.892e^-5	0.669	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	17877171	2R_17877171_SNP [dm3] 2R_21989666_SNP [dm6]	C	T	1.938e^-5	0.669	SYNONYMOUS_CODING CG34370	TF binding site mE1_TFBS_cad
2L	554505	2L_554505_SNP [dm3] 2L_554505_SNP [dm6]	T	C	1.972e^-5	0.669	SYNONYMOUS_CODING rempA
3L	3499962	3L_3499962_SNP [dm3] 3L_3499962_SNP [dm6]	C	T	2.043e^-5	0.669	INTRON CG42324
2R	1922669	2R_1922669_SNP [dm3] 2R_6035164_SNP [dm6]	T	C	2.067e^-5	0.669	INTRON SCAP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18604425	3R_18604425_SNP [dm3] 3R_22778703_SNP [dm6]	A	C	2.078e^-5	0.669	INTRON CG7029 EXON CR43654	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	6106168	2L_6106168_INS [dm3] 2L_6106168_INS [dm6]	G	CT	2.118e^-5	0.669	INTRON stai
2L	6106172	2L_6106172_INS [dm3] 2L_6106172_INS [dm6]	T	TAAGCTA	2.118e^-5	0.669	INTRON stai
X	20396870	X_20396870_SNP [dm3] X_20525843_SNP [dm6]	G	A	2.133e^-5	0.669	UPSTREAM Tak1 INTERGENIC	TF binding site mE1_TFBS_zfh1
X	20396871	X_20396871_SNP [dm3] X_20525844_SNP [dm6]	G	A	2.133e^-5	0.669	UPSTREAM Tak1 INTERGENIC	TF binding site mE1_TFBS_zfh1
3L	1759415	3L_1759415_SNP [dm3] 3L_1759415_SNP [dm6]	G	A	2.229e^-5	0.669	SYNONYMOUS_CODING Dhc62B DOWNSTREAM CG8001	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13693541	2R_13693541_SNP [dm3] 2R_17806036_SNP [dm6]	A	T	2.310e^-5	0.669	INTRON grh	TF binding site BDTNP1_TFBS_dl
3R	8517999	3R_8517999_SNP [dm3] 3R_12692277_SNP [dm6]	G	T	2.447e^-5	0.669	SYNONYMOUS_CODING CG31347 UPSTREAM Su_fu_ INTRON Arp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9235815	2L_9235815_SNP [dm3] 2L_9235815_SNP [dm6]	T	A	2.477e^-5	0.669	DOWNSTREAM tRNA:CR31885 INTRON tai
2R	1922700	2R_1922700_SNP [dm3] 2R_6035195_SNP [dm6]	T	C	2.486e^-5	0.669	INTRON SCAP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12474432	2R_12474432_INS [dm3] 2R_16586927_INS [dm6]	T	TT	2.493e^-5	0.669	DOWNSTREAM CG8311 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	9074778	2L_9074778_SNP [dm3] 2L_9074778_SNP [dm6]	C	T	2.525e^-5	0.669	INTERGENIC
2R	1928321	2R_1928321_SNP [dm3] 2R_6040816_SNP [dm6]	T	A	2.546e^-5	0.669	UPSTREAM CG14591 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	1928456	2R_1928456_SNP [dm3] 2R_6040951_SNP [dm6]	C	G	2.546e^-5	0.669	UPSTREAM CG14591 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	15274440	2L_15274440_SNP [dm3] 2L_15274440_SNP [dm6]	A	T	2.564e^-5	0.669	INTRON UK114	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14107422	2L_14107422_SNP [dm3] 2L_14107422_SNP [dm6]	T	C	2.565e^-5	0.669	UTR_3_PRIME CG16879 DOWNSTREAM CG16879 & 1 other
3L	12705191	3L_12705191_DEL [dm3] 3L_12712091_DEL [dm6]	AAATATCCTA	A	2.603e^-5	0.669	INTERGENIC
2L	9985299	2L_9985299_SNP [dm3] 2L_9985299_SNP [dm6]	T	A	2.663e^-5	0.669	UPSTREAM CR13130 INTRON bib	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	800295	2R_800295_SNP [dm3] 2R_4912790_SNP [dm6]	G	A	2.685e^-5	0.669	INTERGENIC	transposable element FlyBase
2L	22450549	2L_22450549_SNP [dm3] 2L_22557817_SNP [dm6]	G	A	2.716e^-5	0.669	INTERGENIC
2R	18444112	2R_18444112_SNP [dm3] 2R_22556607_SNP [dm6]	T	C	2.905e^-5	0.669	SYNONYMOUS_CODING px	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13656806	3L_13656806_SNP [dm3] 3L_13663706_SNP [dm6]	T	C	2.926e^-5	0.669	INTRON bru-3
X	11164903	X_11164903_SNP [dm3] X_11270870_SNP [dm6]	T	C	2.994e^-5	0.669	INTRON CG44422
X	18859778	X_18859778_SNP [dm3] X_18965745_SNP [dm6]	C	G	2.995e^-5	0.669	INTRON CG43759
3R	26659694	3R_26659694_SNP [dm3] 3R_30833972_SNP [dm6]	C	A	3.013e^-5	0.669	INTRON CG15544
2L	827721	2L_827721_SNP [dm3] 2L_827721_SNP [dm6]	G	A	3.086e^-5	0.669	INTRON dock	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18011462	2L_18011462_SNP [dm3] 2L_18011462_SNP [dm6]	C	G	3.129e^-5	0.669	UTR_5_PRIME elfless UPSTREAM rdo
3R	16067745	3R_16067745_SNP [dm3] 3R_20242023_SNP [dm6]	A	C	3.131e^-5	0.669	INTRON Nlg4
2L	4478083	2L_4478083_SNP [dm3] 2L_4478083_SNP [dm6]	T	C	3.131e^-5	0.669	UTR_3_PRIME dp
2L	554520	2L_554520_SNP [dm3] 2L_554520_SNP [dm6]	A	G	3.178e^-5	0.669	SYNONYMOUS_CODING rempA
2R	9641336	2R_9641336_SNP [dm3] 2R_13753831_SNP [dm6]	A	C	3.184e^-5	0.669	UPSTREAM CG6280 INTERGENIC
2R	2035245	2R_2035245_SNP [dm3] 2R_6147740_SNP [dm6]	C	G	3.295e^-5	0.669	INTRON EcR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2035267	2R_2035267_SNP [dm3] 2R_6147762_SNP [dm6]	T	C	3.295e^-5	0.669	INTRON EcR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2105215	3L_2105215_SNP [dm3] 3L_2105215_SNP [dm6]	T	C	3.350e^-5	0.669	SYNONYMOUS_CODING sls	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	9442936	3R_9442936_SNP [dm3] 3R_13617214_SNP [dm6]	G	A	3.415e^-5	0.669	DOWNSTREAM CG9269 & 1 other INTERGENIC
X	16510329	X_16510329_SNP [dm3] X_16616296_SNP [dm6]	A	G	3.473e^-5	0.669	SYNONYMOUS_CODING CG9782	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	2397231	X_2397231_SNP [dm3] X_2503198_SNP [dm6]	T	A	3.641e^-5	0.669	INTRON trol
2L	7333251	2L_7333251_SNP [dm3] 2L_7333251_SNP [dm6]	T	A	3.727e^-5	0.669	UPSTREAM Wnt6 INTERGENIC
X	2397230	X_2397230_SNP [dm3] X_2503197_SNP [dm6]	T	A	3.831e^-5	0.669	INTRON trol
X	2397235	X_2397235_SNP [dm3] X_2503202_SNP [dm6]	G	T	3.831e^-5	0.669	INTRON trol
2L	22427226	2L_22427226_SNP [dm3] 2L_22534494_SNP [dm6]	T	C	3.999e^-5	0.669	UTR_3_PRIME RpL5 DOWNSTREAM RpL5 & 1 other
X	4706947	X_4706947_SNP [dm3] X_4812914_SNP [dm6]	A	T	4.074e^-5	0.669	INTERGENIC
2R	13341748	2R_13341748_SNP [dm3] 2R_17454243_SNP [dm6]	T	A	4.099e^-5	0.669	SYNONYMOUS_CODING CG10764
2L	4721535	2L_4721535_SNP [dm3] 2L_4721535_SNP [dm6]	G	A	4.149e^-5	0.669	UTR_3_PRIME CG34351
2L	14425051	2L_14425051_SNP [dm3] 2L_14425051_SNP [dm6]	T	A	4.188e^-5	0.669	NON_SYNONYMOUS_CODING Cpr35B	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	14425102	2L_14425102_SNP [dm3] 2L_14425102_SNP [dm6]	C	A	4.188e^-5	0.669	INTRON Cpr35B	TF binding site mE1_TFBS_chinmo
2L	14425108	2L_14425108_SNP [dm3] 2L_14425108_SNP [dm6]	T	G	4.188e^-5	0.669	INTRON Cpr35B	TF binding site mE1_TFBS_chinmo
2L	14425121	2L_14425121_SNP [dm3] 2L_14425121_SNP [dm6]	T	A	4.188e^-5	0.669	NON_SYNONYMOUS_CODING Cpr35B SPLICE_SITE_REGION Cpr35B	TF binding site mE1_TFBS_chinmo
2R	1877446	2R_1877446_SNP [dm3] 2R_5989941_SNP [dm6]	T	A	4.211e^-5	0.669	INTRON Src42A
2R	1883462	2R_1883462_SNP [dm3] 2R_5995957_SNP [dm6]	A	C	4.211e^-5	0.669	INTRON Src42A
3L	13968410	3L_13968410_SNP [dm3] 3L_13975310_SNP [dm6]	A	G	4.241e^-5	0.669	INTRON Hsc70-1
3L	2105204	3L_2105204_SNP [dm3] 3L_2105204_SNP [dm6]	T	C	4.247e^-5	0.669	NON_SYNONYMOUS_CODING sls	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	1923988	2R_1923988_SNP [dm3] 2R_6036483_SNP [dm6]	G	A	4.262e^-5	0.669	UPSTREAM SCAP DOWNSTREAM CG14591 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
2L	2797927	2L_2797927_SNP [dm3] 2L_2797927_SNP [dm6]	T	G	4.433e^-5	0.669	INTRON Syt1 EXON CR43821	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	9079277	2L_9079277_SNP [dm3] 2L_9079277_SNP [dm6]	C	A	4.448e^-5	0.669	INTERGENIC
X	8878082	X_8878082_SNP [dm3] X_8984049_SNP [dm6]	G	A	4.537e^-5	0.669	SYNONYMOUS_CODING CG12662 INTRON rdgA & 1 other
3L	13133333	3L_13133333_SNP [dm3] 3L_13140233_SNP [dm6]	G	A	4.562e^-5	0.669	INTERGENIC
X	2908486	X_2908486_SNP [dm3] X_3014453_SNP [dm6]	A	C	4.562e^-5	0.669	INTRON kirre
2R	18219090	2R_18219090_SNP [dm3] 2R_22331585_SNP [dm6]	C	G	4.602e^-5	0.669	SYNONYMOUS_CODING T3dh UPSTREAM pgc INTRON pgc
X	18859853	X_18859853_SNP [dm3] X_18965820_SNP [dm6]	C	G	4.610e^-5	0.669	INTRON CG43759	TF binding site BDTNP1_TFBS_dl
X	18859870	X_18859870_SNP [dm3] X_18965837_SNP [dm6]	C	A	4.610e^-5	0.669	INTRON CG43759	TF binding site BDTNP1_TFBS_dl
X	18859881	X_18859881_SNP [dm3] X_18965848_SNP [dm6]	A	C	4.610e^-5	0.669	INTRON CG43759	TF binding site BDTNP1_TFBS_dl
X	18859884	X_18859884_DEL [dm3] X_18965851_DEL [dm6]	GGC	AT	4.610e^-5	0.669	INTRON CG43759	TF binding site BDTNP1_TFBS_dl
2L	2686003	2L_2686003_SNP [dm3] 2L_2686003_SNP [dm6]	G	A	4.627e^-5	0.669	INTRON CG31690
3L	3326927	3L_3326927_SNP [dm3] 3L_3326927_SNP [dm6]	C	A	4.729e^-5	0.669	UPSTREAM CG11526 INTRON CG11526 & 1 other	TF binding site mE1_TFBS_cnc
2R	1749635	2R_1749635_SNP [dm3] 2R_5862130_SNP [dm6]	C	A	4.738e^-5	0.669	INTERGENIC
2L	22931397	2L_22931397_SNP [dm3] 2L_23038665_SNP [dm6]	T	A	4.756e^-5	0.669	INTERGENIC
2L	22980612	2L_22980612_DEL [dm3] 2L_23087880_DEL [dm6]	CATATGCAGCGACTGTGTAT...	C	4.756e^-5	0.669	INTERGENIC
X	17361305	X_17361305_SNP [dm3] X_17467272_SNP [dm6]	C	T	4.783e^-5	0.669	INTRON CG43658
2R	10972523	2R_10972523_SNP [dm3] 2R_15085018_SNP [dm6]	G	C	4.809e^-5	0.669	INTERGENIC
2L	14425074	2L_14425074_SNP [dm3] 2L_14425074_SNP [dm6]	T	G	4.887e^-5	0.669	INTRON Cpr35B	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	22524909	2L_22524909_SNP [dm3] 2L_22632177_SNP [dm6]	C	A	4.923e^-5	0.669	INTRON CG40006
3L	19957155	3L_19957155_SNP [dm3] 3L_19964055_SNP [dm6]	T	G	4.958e^-5	0.669	INTRON Ac76E
2R	1874679	2R_1874679_SNP [dm3] 2R_5987174_SNP [dm6]	C	T	5.007e^-5	0.669	INTRON Src42A
2R	1878861	2R_1878861_SNP [dm3] 2R_5991356_SNP [dm6]	A	T	5.007e^-5	0.669	INTRON Src42A
2R	1884565	2R_1884565_SNP [dm3] 2R_5997060_SNP [dm6]	A	G	5.007e^-5	0.669	INTRON Src42A
2R	1884929	2R_1884929_SNP [dm3] 2R_5997424_SNP [dm6]	T	A	5.007e^-5	0.669	INTRON Src42A
2R	1897565	2R_1897565_SNP [dm3] 2R_6010060_SNP [dm6]	T	C	5.007e^-5	0.669	INTRON Src42A
2R	1903335	2R_1903335_SNP [dm3] 2R_6015830_SNP [dm6]	G	A	5.007e^-5	0.669	UPSTREAM Act42A INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2R	1905638	2R_1905638_SNP [dm3] 2R_6018133_SNP [dm6]	C	A	5.007e^-5	0.669	NON_SYNONYMOUS_CODING Pngl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	1908568	2R_1908568_SNP [dm3] 2R_6021063_SNP [dm6]	A	G	5.007e^-5	0.669	UTR_3_PRIME dream DOWNSTREAM Pngl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	1911352	2R_1911352_SNP [dm3] 2R_6023847_SNP [dm6]	T	G	5.007e^-5	0.669	UPSTREAM dream INTERGENIC
2R	1918565	2R_1918565_DEL [dm3] 2R_6031060_DEL [dm6]	TATC	CT	5.007e^-5	0.669	INTRON SCAP
2R	1920627	2R_1920627_SNP [dm3] 2R_6033122_SNP [dm6]	G	A	5.007e^-5	0.669	INTRON SCAP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	1927386	2R_1927386_SNP [dm3] 2R_6039881_SNP [dm6]	C	T	5.007e^-5	0.669	INTRON CG14591	TF binding site BDTNP1_TFBS_dl
2R	1927428	2R_1927428_DEL [dm3] 2R_6039923_DEL [dm6]	ACATGC	A	5.007e^-5	0.669	INTRON CG14591	TF binding site BDTNP1_TFBS_dl
2R	1933267	2R_1933267_SNP [dm3] 2R_6045762_SNP [dm6]	A	C	5.007e^-5	0.669	DOWNSTREAM Tbce INTERGENIC	transposable element FlyBase
2R	1644140	2R_1644140_DEL [dm3] 2R_5756635_DEL [dm6]	TCTCC	T	5.034e^-5	0.669	DOWNSTREAM l_2_09851 INTERGENIC	transposable element FlyBase
2L	8984453	2L_8984453_SNP [dm3] 2L_8984453_SNP [dm6]	A	G	5.044e^-5	0.669	INTRON CG13101	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	17405326	2L_17405326_INS [dm3] 2L_17405326_INS [dm6]	T	TT	5.057e^-5	0.669	DOWNSTREAM CLIP-190 INTRON CLIP-190
2R	12474655	2R_12474655_SNP [dm3] 2R_16587150_SNP [dm6]	G	A	5.106e^-5	0.669	UTR_3_PRIME CG8311 DOWNSTREAM RpLP2	TF binding site BDTNP1_TFBS_dl
2L	11081131	2L_11081131_SNP [dm3] 2L_11081131_SNP [dm6]	C	A	5.108e^-5	0.669	INTRON AstC
3L	2105272	3L_2105272_SNP [dm3] 3L_2105272_SNP [dm6]	G	T	5.111e^-5	0.669	SYNONYMOUS_CODING sls	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	21854052	3L_21854052_SNP [dm3] 3L_21860952_SNP [dm6]	G	A	5.119e^-5	0.669	INTRON mub	TF binding site mE1_TFBS_inv
3R	25205255	3R_25205255_SNP [dm3] 3R_29379533_SNP [dm6]	G	A	5.259e^-5	0.678	INTRON Ptp99A
X	4707004	X_4707004_SNP [dm3] X_4812971_SNP [dm6]	A	T	5.259e^-5	0.678	INTERGENIC
3L	1789336	3L_1789336_SNP [dm3] 3L_1789336_SNP [dm6]	A	C	5.344e^-5	0.68	DOWNSTREAM dlt INTRON alpha-Spec
3L	2105103	3L_2105103_SNP [dm3] 3L_2105103_SNP [dm6]	A	C	5.383e^-5	0.68	INTRON sls	TF binding site mE1_TFBS_chinmo
X	18859876	X_18859876_SNP [dm3] X_18965843_SNP [dm6]	T	C	5.405e^-5	0.68	INTRON CG43759	TF binding site BDTNP1_TFBS_dl
3R	11322016	3R_11322016_SNP [dm3] 3R_15496294_SNP [dm6]	A	C	5.472e^-5	0.68	DOWNSTREAM CG5213 INTERGENIC
3L	7754836	3L_7754836_SNP [dm3] 3L_7761736_SNP [dm6]	T	A	5.552e^-5	0.68	SYNONYMOUS_CODING Hn UTR_5_PRIME Hn
X	2908503	X_2908503_SNP [dm3] X_3014470_SNP [dm6]	T	C	5.638e^-5	0.68	INTRON kirre
2R	17881975	2R_17881975_SNP [dm3] 2R_21994470_SNP [dm6]	T	A	5.669e^-5	0.68	INTRON CG34370
2L	8810597	2L_8810597_SNP [dm3] 2L_8810597_SNP [dm6]	T	C	5.718e^-5	0.68	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	2908522	X_2908522_SNP [dm3] X_3014489_SNP [dm6]	G	A	5.727e^-5	0.68	INTRON kirre
2L	10081452	2L_10081452_SNP [dm3] 2L_10081452_SNP [dm6]	G	T	5.753e^-5	0.68	SYNONYMOUS_CODING CG44153	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9151139	2L_9151139_INS [dm3] 2L_9151139_INS [dm6]	A	AA	5.786e^-5	0.68	UPSTREAM CG32982 INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	19250179	3R_19250179_SNP [dm3] 3R_23424457_SNP [dm6]	T	A	5.837e^-5	0.68	INTRON CG4374
X	4705898	X_4705898_SNP [dm3] X_4811865_SNP [dm6]	A	G	5.905e^-5	0.68	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	22473028	2L_22473028_SNP [dm3] 2L_22580296_SNP [dm6]	A	G	5.998e^-5	0.68	SYNONYMOUS_CODING CG17494	TF binding site mE1_TFBS_sens
2L	4586055	2L_4586055_SNP [dm3] 2L_4586055_SNP [dm6]	A	G	6.020e^-5	0.68	INTRON dp
3R	26599617	3R_26599617_SNP [dm3] 3R_30773895_SNP [dm6]	G	A	6.059e^-5	0.68	INTRON zfh1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2R	2085275	2R_2085275_SNP [dm3] 2R_6197770_SNP [dm6]	G	A	6.088e^-5	0.68	UTR_3_PRIME CG30432	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	9984974	2L_9984974_SNP [dm3] 2L_9984974_SNP [dm6]	G	A	6.159e^-5	0.68	NON_SYNONYMOUS_CODING bib UPSTREAM CR13130	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	1924492	2R_1924492_SNP [dm3] 2R_6036987_SNP [dm6]	G	A	6.162e^-5	0.68	UTR_3_PRIME CG14591 UPSTREAM SCAP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	1908717	2R_1908717_DEL [dm3] 2R_6021212_DEL [dm6]	TTCT	T	6.172e^-5	0.68	UTR_3_PRIME dream DOWNSTREAM Pngl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	5897601	X_5897601_SNP [dm3] X_6003568_SNP [dm6]	A	G	6.233e^-5	0.68	INTRON CR44498
3R	14189803	3R_14189803_SNP [dm3] 3R_18364081_SNP [dm6]	A	T	6.289e^-5	0.68	SYNONYMOUS_CODING CG7669 DOWNSTREAM WRNexo
3R	9476474	3R_9476474_SNP [dm3] 3R_13650752_SNP [dm6]	A	C	6.370e^-5	0.68	INTRON rin
3R	9476494	3R_9476494_SNP [dm3] 3R_13650772_SNP [dm6]	A	T	6.370e^-5	0.68	INTRON rin
3R	9476516	3R_9476516_SNP [dm3] 3R_13650794_SNP [dm6]	G	C	6.370e^-5	0.68	INTRON rin
2L	13425332	2L_13425332_SNP [dm3] 2L_13425332_SNP [dm6]	C	A	6.438e^-5	0.68	INTRON CG42784
3R	24579984	3R_24579984_SNP [dm3] 3R_28754262_SNP [dm6]	G	T	6.488e^-5	0.68	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	1113940	2L_1113940_SNP [dm3] 2L_1113940_SNP [dm6]	A	G	6.494e^-5	0.68	NON_SYNONYMOUS_CODING CG14340 DOWNSTREAM Pino
X	6115489	X_6115489_SNP [dm3] X_6221456_SNP [dm6]	G	A	6.561e^-5	0.68	SYNONYMOUS_CODING Efr
2L	4722022	2L_4722022_DEL [dm3] 2L_4722022_DEL [dm6]	AATATGAATAATAT...	A	6.566e^-5	0.68	UTR_3_PRIME CG34351
3L	19249565	3L_19249565_SNP [dm3] 3L_19256465_SNP [dm6]	T	C	6.680e^-5	0.68	SYNONYMOUS_CODING rept DOWNSTREAM nes	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	21853814	3L_21853814_SNP [dm3] 3L_21860714_SNP [dm6]	G	A	6.685e^-5	0.68	INTRON mub	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	6479202	X_6479202_DEL [dm3] X_6585169_DEL [dm6]	CAC	C	6.701e^-5	0.68	UTR_3_PRIME CG34417 INTRON CG34417
X	18859872	X_18859872_SNP [dm3] X_18965839_SNP [dm6]	T	C	6.751e^-5	0.68	INTRON CG43759	TF binding site BDTNP1_TFBS_dl
3L	12705358	3L_12705358_INS [dm3] 3L_12712258_INS [dm6]	C	CACT	6.761e^-5	0.68	INTERGENIC
2R	7561373	2R_7561373_SNP [dm3] 2R_11673868_SNP [dm6]	T	A	6.791e^-5	0.68	INTRON Roc2 & 1 other
X	18844137	X_18844137_SNP [dm3] X_18950104_SNP [dm6]	C	T	6.804e^-5	0.68	INTRON CG43759
2L	2673362	2L_2673362_INS [dm3] 2L_2673362_INS [dm6]	A	GATTTGCG	6.873e^-5	0.68	INTERGENIC
2L	3226986	2L_3226986_SNP [dm3] 2L_3226986_SNP [dm6]	C	A	6.892e^-5	0.68	INTERGENIC
X	8707155	X_8707155_SNP [dm3] X_8813122_SNP [dm6]	A	C	6.892e^-5	0.68	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	8582440	3R_8582440_SNP [dm3] 3R_12756718_SNP [dm6]	G	T	6.956e^-5	0.68	INTRON beat-Vc
X	16527394	X_16527394_SNP [dm3] X_16633361_SNP [dm6]	C	A	6.977e^-5	0.68	DOWNSTREAM CR45001 INTRON Rok	TF binding site BDTNP1_TFBS_twi
2L	22466229	2L_22466229_SNP [dm3] 2L_22573497_SNP [dm6]	C	A	6.992e^-5	0.68	INTERGENIC
3R	14176038	3R_14176038_SNP [dm3] 3R_18350316_SNP [dm6]	T	C	7.008e^-5	0.68	INTRON CG15803
2L	558766	2L_558766_SNP [dm3] 2L_558766_SNP [dm6]	A	T	7.146e^-5	0.68	UTR_5_PRIME rempA UPSTREAM CG2789 INTRON rempA	TF binding site mE1_TFBS_chinmo
2R	19235786	2R_19235786_SNP [dm3] 2R_23348263_SNP [dm6]	G	A	7.189e^-5	0.68	UPSTREAM CG3502 DOWNSTREAM CG9863 INTERGENIC
X	2908434	X_2908434_SNP [dm3] X_3014401_SNP [dm6]	G	A	7.221e^-5	0.68	INTRON kirre
X	8036042	X_8036042_SNP [dm3] X_8142009_SNP [dm6]	G	A	7.221e^-5	0.68	UTR_5_PRIME Smox DOWNSTREAM CG17982	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
X	8329774	X_8329774_SNP [dm3] X_8435741_SNP [dm6]	C	T	7.221e^-5	0.68	SYNONYMOUS_CODING CG12125	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	2733343	X_2733343_SNP [dm3] X_2839310_SNP [dm6]	G	A	7.260e^-5	0.68	INTRON kirre
2R	8829931	2R_8829931_SNP [dm3] 2R_12942426_SNP [dm6]	T	C	7.302e^-5	0.68	INTRON Mdr49
3R	19643800	3R_19643800_SNP [dm3] 3R_23818078_SNP [dm6]	T	G	7.324e^-5	0.68	INTRON CG34355 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	1903320	2R_1903320_SNP [dm3] 2R_6015815_SNP [dm6]	A	T	7.357e^-5	0.68	UPSTREAM Act42A INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2L	14920225	2L_14920225_SNP [dm3] 2L_14920225_SNP [dm6]	G	T	7.461e^-5	0.68	INTRON CG42313
2R	15212095	2R_15212095_DEL [dm3] 2R_19324590_DEL [dm6]	CC	C	7.463e^-5	0.68	INTRON Rgk1
2L	506116	2L_506116_SNP [dm3] 2L_506116_SNP [dm6]	C	T	7.493e^-5	0.68	INTRON ush
2L	506158	2L_506158_SNP [dm3] 2L_506158_SNP [dm6]	C	T	7.493e^-5	0.68	INTRON ush
3L	5088517	3L_5088517_SNP [dm3] 3L_5088517_SNP [dm6]	A	G	7.494e^-5	0.68	INTERGENIC
2L	9074812	2L_9074812_SNP [dm3] 2L_9074812_SNP [dm6]	T	G	7.508e^-5	0.68	INTERGENIC
2L	9092573	2L_9092573_SNP [dm3] 2L_9092573_SNP [dm6]	C	T	7.595e^-5	0.68	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
2L	16362395	2L_16362395_DEL [dm3] 2L_16362395_DEL [dm6]	ACTAAC	A	7.621e^-5	0.68	INTERGENIC
2L	16362402	2L_16362402_SNP [dm3] 2L_16362402_SNP [dm6]	A	T	7.621e^-5	0.68	INTERGENIC
3R	22894448	3R_22894448_SNP [dm3] 3R_27068726_SNP [dm6]	T	C	7.634e^-5	0.68	INTRON spz
3L	9694755	3L_9694755_SNP [dm3] 3L_9701655_SNP [dm6]	G	T	7.737e^-5	0.684	INTRON CG6761	TF binding site mE1_TFBS_cad
2L	8984424	2L_8984424_SNP [dm3] 2L_8984424_SNP [dm6]	G	A	7.798e^-5	0.684	INTRON CG13101	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	8984446	2L_8984446_SNP [dm3] 2L_8984446_SNP [dm6]	T	A	7.798e^-5	0.684	INTRON CG13101	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	22452326	2L_22452326_SNP [dm3] 2L_22559594_SNP [dm6]	G	T	7.828e^-5	0.684	INTERGENIC
2R	17877454	2R_17877454_SNP [dm3] 2R_21989949_SNP [dm6]	G	A	7.888e^-5	0.686	INTRON CG34370
X	14814858	X_14814858_SNP [dm3] X_14920825_SNP [dm6]	G	A	8.046e^-5	0.691	SYNONYMOUS_CODING CG9503 INTRON Flo2
3L	5196302	3L_5196302_SNP [dm3] 3L_5203202_SNP [dm6]	T	G	8.047e^-5	0.691	INTRON shep
X	14708245	X_14708245_SNP [dm3] X_14814212_SNP [dm6]	T	C	8.069e^-5	0.691	INTRON rut
2L	9087382	2L_9087382_SNP [dm3] 2L_9087382_SNP [dm6]	C	T	8.129e^-5	0.691	SYNONYMOUS_CODING Toll-4
2L	5347780	2L_5347780_SNP [dm3] 2L_5347780_SNP [dm6]	A	G	8.135e^-5	0.691	INTRON nompC
2R	17877455	2R_17877455_SNP [dm3] 2R_21989950_SNP [dm6]	A	C	8.192e^-5	0.691	INTRON CG34370
3L	4603420	3L_4603420_SNP [dm3] 3L_4603420_SNP [dm6]	C	A	8.213e^-5	0.691	INTRON Src64B
2R	12082069	2R_12082069_SNP [dm3] 2R_16194564_SNP [dm6]	G	A	8.301e^-5	0.695	SYNONYMOUS_CODING calypso DOWNSTREAM clu	TF binding site mE1_TFBS_cad
2L	987431	2L_987431_SNP [dm3] 2L_987431_SNP [dm6]	T	A	8.352e^-5	0.696	DOWNSTREAM CR44801 INTERGENIC
2L	1018952	2L_1018952_SNP [dm3] 2L_1018952_SNP [dm6]	T	C	8.463e^-5	0.702	INTRON IA-2
X	8502110	X_8502110_DEL [dm3] X_8608077_DEL [dm6]	GGGC	G	8.643e^-5	0.71	INTERGENIC
2L	22443140	2L_22443140_SNP [dm3] 2L_22550408_SNP [dm6]	T	C	8.655e^-5	0.71	UTR_5_PRIME CG17493	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	6167961	2R_6167961_SNP [dm3] 2R_10280456_SNP [dm6]	G	A	8.745e^-5	0.71	SYNONYMOUS_CODING CAP INTRON CAP	TF binding site mE1_TFBS_chinmo
X	17949594	X_17949594_SNP [dm3] X_18055561_SNP [dm6]	C	G	8.834e^-5	0.71	INTRON Sh
X	4792295	X_4792295_SNP [dm3] X_4898262_SNP [dm6]	A	G	8.889e^-5	0.71	INTRON CG42594
2R	10624769	2R_10624769_INS [dm3] 2R_14737264_INS [dm6]	C	CAA	8.891e^-5	0.71	DOWNSTREAM CR43428 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	5195024	2R_5195024_SNP [dm3] 2R_9307519_SNP [dm6]	G	A	9.099e^-5	0.71	SYNONYMOUS_CODING Myd88	TF binding site mE1_TFBS_cad
3L	13491967	3L_13491967_DEL [dm3] 3L_13498867_DEL [dm6]	TTTT	T	9.124e^-5	0.71	INTRON Tgi
2R	16206214	2R_16206214_SNP [dm3] 2R_20318709_SNP [dm6]	C	T	9.235e^-5	0.71	SYNONYMOUS_CODING CG13871 UPSTREAM CG8920
2L	6786901	2L_6786901_SNP [dm3] 2L_6786901_SNP [dm6]	A	G	9.246e^-5	0.71	UPSTREAM nrv1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	22923906	2L_22923906_SNP [dm3] 2L_23031174_SNP [dm6]	G	C	9.247e^-5	0.71	INTERGENIC
X	7681061	X_7681061_SNP [dm3] X_7787028_SNP [dm6]	T	C	9.341e^-5	0.71	INTERGENIC
2L	14920274	2L_14920274_SNP [dm3] 2L_14920274_SNP [dm6]	G	T	9.374e^-5	0.71	INTRON CG42313
2L	13927607	2L_13927607_SNP [dm3] 2L_13927607_SNP [dm6]	C	T	9.447e^-5	0.71	INTRON Ance-3
3R	21698296	3R_21698296_SNP [dm3] 3R_25872574_SNP [dm6]	G	A	9.481e^-5	0.71	UTR_3_PRIME CG5890 DOWNSTREAM Tsp96F
3R	22445849	3R_22445849_SNP [dm3] 3R_26620127_SNP [dm6]	C	T	9.566e^-5	0.71	UTR_3_PRIME TwdlM DOWNSTREAM TwdlP
3L	5442569	3L_5442569_SNP [dm3] 3L_5449469_SNP [dm6]	T	A	9.638e^-5	0.71	INTERGENIC
3R	22768935	3R_22768935_SNP [dm3] 3R_26943213_SNP [dm6]	T	C	9.763e^-5	0.71	SYNONYMOUS_CODING sda	TF binding site mE1_TFBS_cad
2R	19823033	2R_19823033_SNP [dm3] 2R_23935510_SNP [dm6]	T	A	9.796e^-5	0.71	INTRON Ca-P60A
X	12271609	X_12271609_SNP [dm3] X_12377576_SNP [dm6]	C	T	9.817e^-5	0.71	SYNONYMOUS_CODING Ir11a
2L	10332091	2L_10332091_SNP [dm3] 2L_10332091_SNP [dm6]	T	A	9.835e^-5	0.71	SYNONYMOUS_CODING CG5037 UPSTREAM CG5375	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10332247	2L_10332247_SNP [dm3] 2L_10332247_SNP [dm6]	C	T	9.835e^-5	0.71	SYNONYMOUS_CODING CG5037	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	18859919	X_18859919_SNP [dm3] X_18965886_SNP [dm6]	G	T	9.875e^-5	0.71	INTRON CG43759	TF binding site BDTNP1_TFBS_dl
2L	16362394	2L_16362394_SNP [dm3] 2L_16362394_SNP [dm6]	A	C	9.909e^-5	0.71	INTERGENIC
2R	12474535	2R_12474535_SNP [dm3] 2R_16587030_SNP [dm6]	A	C	9.944e^-5	0.71	DOWNSTREAM CG8311 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8333072	2L_8333072_SNP [dm3] 2L_8333072_SNP [dm6]	T	C	9.977e^-5	0.71	DOWNSTREAM CG14275 INTERGENIC
3R	25971832	3R_25971832_SNP [dm3] 3R_30146110_SNP [dm6]	G	T	9.980e^-5	0.71	INTRON AdoR
X	8878169	X_8878169_SNP [dm3] X_8984136_SNP [dm6]	C	G	1.002e^-4	0.71	SYNONYMOUS_CODING CG12662 INTRON rdgA & 1 other
2L	13425250	2L_13425250_SNP [dm3] 2L_13425250_SNP [dm6]	G	A	1.007e^-4	0.71	INTRON CG42784
2R	11049570	2R_11049570_SNP [dm3] 2R_15162065_SNP [dm6]	C	T	1.017e^-4	0.71	INTRON igl
2L	7294883	2L_7294883_SNP [dm3] 2L_7294883_SNP [dm6]	C	T	1.017e^-4	0.71	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4260724	2L_4260724_SNP [dm3] 2L_4260724_SNP [dm6]	G	C	1.023e^-4	0.71	EXON CR44080
2L	8412752	2L_8412752_DEL [dm3] 2L_8412752_DEL [dm6]	AATA	A	1.024e^-4	0.71	UTR_3_PRIME CG13398 UPSTREAM CG13397
2R	16331868	2R_16331868_SNP [dm3] 2R_20444363_SNP [dm6]	G	A	1.035e^-4	0.71	INTRON CG12484	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	22904653	3R_22904653_SNP [dm3] 3R_27078931_SNP [dm6]	A	G	1.035e^-4	0.71	SYNONYMOUS_CODING CG14257	TF binding site mE1_TFBS_chinmo
X	7743893	X_7743893_SNP [dm3] X_7849860_SNP [dm6]	C	A	1.041e^-4	0.71	INTERGENIC
3L	3588673	3L_3588673_SNP [dm3] 3L_3588673_SNP [dm6]	T	G	1.046e^-4	0.71	INTRON Eip63E
2L	7231464	2L_7231464_SNP [dm3] 2L_7231464_SNP [dm6]	A	G	1.049e^-4	0.71	DOWNSTREAM CG43800 INTRON Ndae1
2R	14655772	2R_14655772_SNP [dm3] 2R_18768267_SNP [dm6]	A	G	1.054e^-4	0.71	SPLICE_SITE_REGION Mctp INTRON Mctp	TF binding site mE1_TFBS_chinmo
3R	13259880	3R_13259880_SNP [dm3] 3R_17434158_SNP [dm6]	A	C	1.066e^-4	0.71	INTRON CG5873 & 1 other
3R	8443797	3R_8443797_SNP [dm3] 3R_12618075_SNP [dm6]	T	C	1.072e^-4	0.71	DOWNSTREAM CR44942 INTERGENIC
3L	662754	3L_662754_SNP [dm3] 3L_662754_SNP [dm6]	G	A	1.077e^-4	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
2R	16206089	2R_16206089_SNP [dm3] 2R_20318584_SNP [dm6]	A	G	1.080e^-4	0.71	NON_SYNONYMOUS_CODING CG13871 UPSTREAM CG8920	TF binding site mE1_TFBS_cad
2L	8583613	2L_8583613_SNP [dm3] 2L_8583613_SNP [dm6]	A	G	1.097e^-4	0.71	INTRON Sema-1a
2L	12158227	2L_12158227_SNP [dm3] 2L_12158227_SNP [dm6]	C	T	1.099e^-4	0.71	INTRON CG31760
X	8712594	X_8712594_SNP [dm3] X_8818561_SNP [dm6]	G	C	1.112e^-4	0.71	INTERGENIC
X	19369802	X_19369802_SNP [dm3] X_19475769_SNP [dm6]	T	C	1.121e^-4	0.71	SYNONYMOUS_CODING CG12200 INTRON CG32533
3L	5197134	3L_5197134_SNP [dm3] 3L_5204034_SNP [dm6]	C	G	1.121e^-4	0.71	INTRON shep
2R	15269722	2R_15269722_SNP [dm3] 2R_19382217_SNP [dm6]	C	T	1.130e^-4	0.71	SYNONYMOUS_CODING CG10073
2R	8829963	2R_8829963_SNP [dm3] 2R_12942458_SNP [dm6]	T	A	1.131e^-4	0.71	INTRON Mdr49
3R	18837366	3R_18837366_SNP [dm3] 3R_23011644_SNP [dm6]	C	T	1.140e^-4	0.71	UPSTREAM CG6688 DOWNSTREAM CR44225 INTERGENIC
2L	7906844	2L_7906844_SNP [dm3] 2L_7906844_SNP [dm6]	T	A	1.152e^-4	0.71	INTRON Snoo
2L	7907494	2L_7907494_SNP [dm3] 2L_7907494_SNP [dm6]	T	A	1.152e^-4	0.71	INTRON Snoo	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	12705356	3L_12705356_SNP [dm3] 3L_12712256_SNP [dm6]	A	G	1.154e^-4	0.71	INTERGENIC
2L	13927075	2L_13927075_SNP [dm3] 2L_13927075_SNP [dm6]	C	T	1.157e^-4	0.71	INTRON Ance-3
2L	9093670	2L_9093670_SNP [dm3] 2L_9093670_SNP [dm6]	C	T	1.167e^-4	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	9092142	2L_9092142_SNP [dm3] 2L_9092142_SNP [dm6]	C	G	1.172e^-4	0.71	INTERGENIC	TF binding site mE1_TFBS_sens
2R	2395411	2R_2395411_SNP [dm3] 2R_6507906_SNP [dm6]	T	C	1.185e^-4	0.71	DOWNSTREAM CR45127 INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	2580406	3L_2580406_SNP [dm3] 3L_2580406_SNP [dm6]	G	A	1.190e^-4	0.71	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1640813	2R_1640813_DEL [dm3] 2R_5753308_DEL [dm6]	GTTTTGGGTTA...	G	1.206e^-4	0.71	INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	9079946	2L_9079946_SNP [dm3] 2L_9079946_SNP [dm6]	C	T	1.207e^-4	0.71	INTERGENIC
2L	9080243	2L_9080243_DEL [dm3] 2L_9080243_DEL [dm6]	AT	A	1.207e^-4	0.71	INTERGENIC
2L	22444858	2L_22444858_SNP [dm3] 2L_22552126_SNP [dm6]	A	C	1.221e^-4	0.71	UTR_3_PRIME CG17493 DOWNSTREAM CG17493
2R	16206034	2R_16206034_SNP [dm3] 2R_20318529_SNP [dm6]	A	G	1.223e^-4	0.71	SYNONYMOUS_CODING CG13871 UPSTREAM CG8920	TF binding site mE1_TFBS_cad
3L	19957154	3L_19957154_SNP [dm3] 3L_19964054_SNP [dm6]	G	T	1.237e^-4	0.71	INTRON Ac76E
2L	16362195	2L_16362195_SNP [dm3] 2L_16362195_SNP [dm6]	C	T	1.252e^-4	0.71	INTERGENIC
3L	1127638	3L_1127638_SNP [dm3] 3L_1127638_SNP [dm6]	T	C	1.263e^-4	0.71	INTERGENIC	regulatory region REDfly_CRMs
3L	1127646	3L_1127646_SNP [dm3] 3L_1127646_SNP [dm6]	C	A	1.263e^-4	0.71	INTERGENIC	regulatory region REDfly_CRMs
X	4293670	X_4293670_SNP [dm3] X_4399637_SNP [dm6]	A	T	1.277e^-4	0.71	INTRON CR32773
3R	9476502	3R_9476502_SNP [dm3] 3R_13650780_SNP [dm6]	C	G	1.277e^-4	0.71	INTRON rin
2L	9985480	2L_9985480_SNP [dm3] 2L_9985480_SNP [dm6]	A	G	1.281e^-4	0.71	UPSTREAM CR13130 INTRON bib	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7170424	3L_7170424_SNP [dm3] 3L_7177324_SNP [dm6]	C	T	1.288e^-4	0.71	INTRON Dscam2
X	8340662	X_8340662_SNP [dm3] X_8446629_SNP [dm6]	A	T	1.289e^-4	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13855185	2R_13855185_SNP [dm3] 2R_17967680_SNP [dm6]	T	C	1.290e^-4	0.71	INTERGENIC
X	16511429	X_16511429_SNP [dm3] X_16617396_SNP [dm6]	T	G	1.294e^-4	0.71	INTRON CG9782
2R	16205977	2R_16205977_SNP [dm3] 2R_20318472_SNP [dm6]	A	T	1.301e^-4	0.71	SYNONYMOUS_CODING CG13871 UPSTREAM CG8920	TF binding site mE1_TFBS_cad
2R	4871407	2R_4871407_SNP [dm3] 2R_8983902_SNP [dm6]	T	C	1.301e^-4	0.71	INTRON CG8213
2R	7673484	2R_7673484_SNP [dm3] 2R_11785979_SNP [dm6]	A	C	1.301e^-4	0.71	INTRON ths
2R	14655776	2R_14655776_SNP [dm3] 2R_18768271_SNP [dm6]	T	C	1.307e^-4	0.71	SPLICE_SITE_REGION Mctp INTRON Mctp	TF binding site mE1_TFBS_chinmo
3R	14175882	3R_14175882_SNP [dm3] 3R_18350160_SNP [dm6]	A	T	1.311e^-4	0.71	INTRON CG15803
3R	14175884	3R_14175884_SNP [dm3] 3R_18350162_SNP [dm6]	G	C	1.311e^-4	0.71	INTRON CG15803
X	14718397	X_14718397_DEL [dm3] X_14824364_DEL [dm6]	TATC	A	1.317e^-4	0.71	INTRON rut	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14655764	2R_14655764_SNP [dm3] 2R_18768259_SNP [dm6]	T	C	1.322e^-4	0.71	INTRON Mctp	TF binding site mE1_TFBS_chinmo
2R	12474651	2R_12474651_SNP [dm3] 2R_16587146_SNP [dm6]	G	A	1.337e^-4	0.71	UTR_3_PRIME CG8311 DOWNSTREAM RpLP2	TF binding site BDTNP1_TFBS_dl
2R	6167958	2R_6167958_SNP [dm3] 2R_10280453_SNP [dm6]	A	T	1.337e^-4	0.71	SYNONYMOUS_CODING CAP INTRON CAP	TF binding site mE1_TFBS_chinmo
2L	6842149	2L_6842149_SNP [dm3] 2L_6842149_SNP [dm6]	G	C	1.338e^-4	0.71	INTERGENIC
2R	11436376	2R_11436376_SNP [dm3] 2R_15548871_SNP [dm6]	C	G	1.341e^-4	0.71	INTRON CG8192
2L	11506820	2L_11506820_SNP [dm3] 2L_11506820_SNP [dm6]	T	C	1.346e^-4	0.71	NON_SYNONYMOUS_CODING spz4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10969721	3L_10969721_SNP [dm3] 3L_10976621_SNP [dm6]	T	A	1.349e^-4	0.71	INTERGENIC	TF binding site mE1_TFBS_cad
3L	10969724	3L_10969724_DEL [dm3] 3L_10976624_DEL [dm6]	GG	G	1.349e^-4	0.71	INTERGENIC	TF binding site mE1_TFBS_cad
3L	10969752	3L_10969752_SNP [dm3] 3L_10976652_SNP [dm6]	C	A	1.349e^-4	0.71	INTERGENIC
3L	10969762	3L_10969762_SNP [dm3] 3L_10976662_SNP [dm6]	A	T	1.349e^-4	0.71	INTERGENIC
3L	10969784	3L_10969784_SNP [dm3] 3L_10976684_SNP [dm6]	G	C	1.349e^-4	0.71	INTERGENIC
2L	16074166	2L_16074166_SNP [dm3] 2L_16074166_SNP [dm6]	C	T	1.351e^-4	0.71	UPSTREAM CR44870 INTRON beat-Ia
X	9453212	X_9453212_SNP [dm3] X_9559179_SNP [dm6]	C	T	1.377e^-4	0.71	SYNONYMOUS_CODING Cubn UPSTREAM CR42767	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7358458	3R_7358458_DEL [dm3] 3R_11532736_DEL [dm6]	AA	A	1.409e^-4	0.71	DOWNSTREAM dpr4 INTERGENIC
2R	2826967	2R_2826967_SNP [dm3] 2R_6939462_SNP [dm6]	T	C	1.410e^-4	0.71	INTRON mim
2L	8806401	2L_8806401_SNP [dm3] 2L_8806401_SNP [dm6]	G	T	1.411e^-4	0.71	INTERGENIC
2L	9081833	2L_9081833_SNP [dm3] 2L_9081833_SNP [dm6]	T	A	1.412e^-4	0.71	INTERGENIC
2L	9081908	2L_9081908_SNP [dm3] 2L_9081908_SNP [dm6]	C	A	1.412e^-4	0.71	INTERGENIC
2L	9081915	2L_9081915_INS [dm3] 2L_9081915_INS [dm6]	A	ACATTA	1.412e^-4	0.71	INTERGENIC
2L	9082108	2L_9082108_SNP [dm3] 2L_9082108_SNP [dm6]	C	A	1.412e^-4	0.71	INTERGENIC
2L	9082110	2L_9082110_SNP [dm3] 2L_9082110_SNP [dm6]	A	G	1.412e^-4	0.71	INTERGENIC
2L	9082116	2L_9082116_SNP [dm3] 2L_9082116_SNP [dm6]	C	A	1.412e^-4	0.71	INTERGENIC
2L	9082129	2L_9082129_DEL [dm3] 2L_9082129_DEL [dm6]	GTGAAGG	A	1.412e^-4	0.71	INTERGENIC
2L	9082149	2L_9082149_SNP [dm3] 2L_9082149_SNP [dm6]	C	G	1.412e^-4	0.71	INTERGENIC
2L	9089522	2L_9089522_SNP [dm3] 2L_9089522_SNP [dm6]	C	T	1.412e^-4	0.71	DOWNSTREAM Toll-4 INTERGENIC
2L	9089776	2L_9089776_SNP [dm3] 2L_9089776_SNP [dm6]	T	A	1.412e^-4	0.71	DOWNSTREAM Toll-4 INTERGENIC
2L	9089875	2L_9089875_SNP [dm3] 2L_9089875_SNP [dm6]	T	G	1.412e^-4	0.71	DOWNSTREAM Toll-4 INTERGENIC
2L	9089922	2L_9089922_SNP [dm3] 2L_9089922_SNP [dm6]	T	A	1.412e^-4	0.71	DOWNSTREAM Toll-4 INTERGENIC
2L	3800773	2L_3800773_SNP [dm3] 2L_3800773_SNP [dm6]	T	C	1.412e^-4	0.71	SYNONYMOUS_CODING CG3921
2R	15074883	2R_15074883_SNP [dm3] 2R_19187378_SNP [dm6]	A	G	1.415e^-4	0.71	INTRON hppy
2L	12158242	2L_12158242_SNP [dm3] 2L_12158242_SNP [dm6]	A	T	1.421e^-4	0.71	INTRON CG31760
3L	15908004	3L_15908004_DEL [dm3] 3L_15914904_DEL [dm6]	ATCAAAGA	A	1.422e^-4	0.71	INTRON sff
2R	2441317	2R_2441317_SNP [dm3] 2R_6553812_SNP [dm6]	C	T	1.426e^-4	0.71	INTRON jing
2L	22441453	2L_22441453_SNP [dm3] 2L_22548721_SNP [dm6]	T	A	1.427e^-4	0.71	DOWNSTREAM CG17490 INTERGENIC
2L	22452878	2L_22452878_SNP [dm3] 2L_22560146_SNP [dm6]	A	T	1.427e^-4	0.71	INTERGENIC
2R	12274022	2R_12274022_SNP [dm3] 2R_16386517_SNP [dm6]	A	T	1.444e^-4	0.71	UPSTREAM Sema-2b DOWNSTREAM CG43187 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	5501837	3L_5501837_DEL [dm3] 3L_5508737_DEL [dm6]	AA	A	1.447e^-4	0.71	INTRON CG34342
3R	26669659	3R_26669659_SNP [dm3] 3R_30843937_SNP [dm6]	G	T	1.458e^-4	0.71	INTERGENIC
3R	19906138	3R_19906138_MNP [dm3] 3R_24080416_MNP [dm6]	GTG	AGT	1.459e^-4	0.71	INTRON 4EHP
2L	22869210	2L_22869210_SNP [dm3] 2L_22976478_SNP [dm6]	G	T	1.464e^-4	0.71	INTERGENIC
2R	1372307	2R_1372307_SNP [dm3] 2R_5484802_SNP [dm6]	C	A	1.473e^-4	0.71	INTRON CG30440
X	17943498	X_17943498_SNP [dm3] X_18049465_SNP [dm6]	C	G	1.473e^-4	0.71	DOWNSTREAM CG15373 INTRON Sh
2L	22818168	2L_22818168_SNP [dm3] 2L_22925436_SNP [dm6]	A	C	1.486e^-4	0.71	NON_SYNONYMOUS_CODING lt UTR_5_PRIME lt
2R	1643741	2R_1643741_SNP [dm3] 2R_5756236_SNP [dm6]	T	G	1.488e^-4	0.71	UTR_3_PRIME l_2_09851 DOWNSTREAM l_2_09851
3L	12528943	3L_12528943_SNP [dm3] 3L_12535843_SNP [dm6]	C	G	1.494e^-4	0.71	NON_SYNONYMOUS_CODING CG4069 DOWNSTREAM CG10688	TF binding site mE1_TFBS_cad
X	15040663	X_15040663_SNP [dm3] X_15146630_SNP [dm6]	G	T	1.496e^-4	0.71	INTRON CG9095
3R	10225185	3R_10225185_SNP [dm3] 3R_14399463_SNP [dm6]	G	T	1.498e^-4	0.71	INTRON cv-c	TF binding site mE1_TFBS_Trl
2L	2798580	2L_2798580_SNP [dm3] 2L_2798580_SNP [dm6]	T	G	1.502e^-4	0.71	UTR_5_PRIME Syt1 DOWNSTREAM CR43821 INTRON Syt1	TF binding site BDTNP1_TFBS_dl
3R	16348426	3R_16348426_SNP [dm3] 3R_20522704_SNP [dm6]	T	C	1.502e^-4	0.71	INTERGENIC
2L	12874750	2L_12874750_SNP [dm3] 2L_12874750_SNP [dm6]	C	A	1.504e^-4	0.71	INTERGENIC
2L	9080242	2L_9080242_SNP [dm3] 2L_9080242_SNP [dm6]	C	T	1.506e^-4	0.71	INTERGENIC
2L	12780240	2L_12780240_SNP [dm3] 2L_12780240_SNP [dm6]	C	T	1.508e^-4	0.71	INTERGENIC
2L	12780241	2L_12780241_SNP [dm3] 2L_12780241_SNP [dm6]	T	C	1.508e^-4	0.71	INTERGENIC
2L	9082154	2L_9082154_SNP [dm3] 2L_9082154_SNP [dm6]	T	C	1.508e^-4	0.71	INTERGENIC
2L	9082175	2L_9082175_SNP [dm3] 2L_9082175_SNP [dm6]	A	C	1.508e^-4	0.71	INTERGENIC
2L	9082683	2L_9082683_SNP [dm3] 2L_9082683_SNP [dm6]	T	C	1.508e^-4	0.71	INTERGENIC
2L	9082716	2L_9082716_SNP [dm3] 2L_9082716_SNP [dm6]	G	T	1.508e^-4	0.71	INTERGENIC
2L	9087467	2L_9087467_SNP [dm3] 2L_9087467_SNP [dm6]	A	T	1.508e^-4	0.71	NON_SYNONYMOUS_CODING Toll-4
2L	9089745	2L_9089745_SNP [dm3] 2L_9089745_SNP [dm6]	A	T	1.508e^-4	0.71	DOWNSTREAM Toll-4 INTERGENIC
2R	8668595	2R_8668595_SNP [dm3] 2R_12781090_SNP [dm6]	A	G	1.530e^-4	0.71	SYNONYMOUS_CODING sca	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	17774846	2L_17774846_SNP [dm3] 2L_17774846_SNP [dm6]	G	A	1.533e^-4	0.71	INTRON CadN
3R	11223276	3R_11223276_SNP [dm3] 3R_15397554_SNP [dm6]	C	A	1.536e^-4	0.71	INTRON Rbp	TF binding site BDTNP1_TFBS_dl
3R	19906098	3R_19906098_SNP [dm3] 3R_24080376_SNP [dm6]	C	T	1.540e^-4	0.71	INTRON 4EHP
3R	19906101	3R_19906101_SNP [dm3] 3R_24080379_SNP [dm6]	T	C	1.540e^-4	0.71	INTRON 4EHP
3R	8443809	3R_8443809_SNP [dm3] 3R_12618087_SNP [dm6]	G	T	1.541e^-4	0.71	DOWNSTREAM CR44942 INTERGENIC
2L	5913498	2L_5913498_DEL [dm3] 2L_5913498_DEL [dm6]	TCTCTTTA	T	1.541e^-4	0.71	INTRON bchs	TF binding site mE1_TFBS_cad
2L	5913508	2L_5913508_INS [dm3] 2L_5913508_INS [dm6]	C	TATTT	1.541e^-4	0.71	INTRON bchs	TF binding site mE1_TFBS_cad
2L	9779168	2L_9779168_SNP [dm3] 2L_9779168_SNP [dm6]	A	G	1.547e^-4	0.71	INTERGENIC
2L	6469847	2L_6469847_SNP [dm3] 2L_6469847_SNP [dm6]	G	C	1.551e^-4	0.71	SYNONYMOUS_CODING mmy	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10537437	2L_10537437_SNP [dm3] 2L_10537437_SNP [dm6]	C	T	1.552e^-4	0.71	DOWNSTREAM CG18302 INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	9189699	3L_9189699_SNP [dm3] 3L_9196599_SNP [dm6]	T	A	1.555e^-4	0.71	INTERGENIC
2L	13425465	2L_13425465_SNP [dm3] 2L_13425465_SNP [dm6]	G	A	1.563e^-4	0.71	INTRON CG42784
3L	10708392	3L_10708392_SNP [dm3] 3L_10715292_SNP [dm6]	C	T	1.568e^-4	0.71	INTERGENIC
3R	3823371	3R_3823371_SNP [dm3] 3R_7997649_SNP [dm6]	C	T	1.590e^-4	0.71	INTERGENIC
3L	1132329	3L_1132329_SNP [dm3] 3L_1132329_SNP [dm6]	C	A	1.592e^-4	0.71	INTERGENIC	regulatory region REDfly_CRMs
2L	2673454	2L_2673454_SNP [dm3] 2L_2673454_SNP [dm6]	T	A	1.596e^-4	0.71	INTERGENIC
2L	22834034	2L_22834034_DEL [dm3] 2L_22941302_DEL [dm6]	GGAGCCCTCCATGTTTGTAG...	G	1.596e^-4	0.71	UTR_3_PRIME lt DOWNSTREAM lt
2L	22878698	2L_22878698_SNP [dm3] 2L_22985966_SNP [dm6]	C	T	1.596e^-4	0.71	INTRON cta
2L	22909126	2L_22909126_SNP [dm3] 2L_23016394_SNP [dm6]	G	A	1.596e^-4	0.71	INTRON Cht3
2L	22919312	2L_22919312_SNP [dm3] 2L_23026580_SNP [dm6]	T	C	1.596e^-4	0.71	UPSTREAM Cht3 INTERGENIC
2L	5637402	2L_5637402_SNP [dm3] 2L_5637402_SNP [dm6]	G	A	1.599e^-4	0.71	INTRON CG31646
2L	17409325	2L_17409325_SNP [dm3] 2L_17409325_SNP [dm6]	T	G	1.606e^-4	0.71	DOWNSTREAM Rpb11 INTRON CLIP-190
X	17618494	X_17618494_SNP [dm3] X_17724461_SNP [dm6]	C	A	1.613e^-4	0.71	INTRON CG42684
3L	2229316	3L_2229316_SNP [dm3] 3L_2229316_SNP [dm6]	G	C	1.619e^-4	0.71	UPSTREAM Oseg2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2229322	3L_2229322_SNP [dm3] 3L_2229322_SNP [dm6]	G	A	1.619e^-4	0.71	UPSTREAM Oseg2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13968464	3L_13968464_SNP [dm3] 3L_13975364_SNP [dm6]	G	A	1.624e^-4	0.71	INTRON Hsc70-1
3L	13968470	3L_13968470_SNP [dm3] 3L_13975370_SNP [dm6]	G	C	1.624e^-4	0.71	INTRON Hsc70-1
3L	13968603	3L_13968603_SNP [dm3] 3L_13975503_SNP [dm6]	T	A	1.624e^-4	0.71	INTRON Hsc70-1
3L	13968604	3L_13968604_SNP [dm3] 3L_13975504_SNP [dm6]	T	C	1.624e^-4	0.71	INTRON Hsc70-1
3L	13968615	3L_13968615_SNP [dm3] 3L_13975515_SNP [dm6]	T	C	1.624e^-4	0.71	INTRON Hsc70-1
2R	8564595	2R_8564595_SNP [dm3] 2R_12677090_SNP [dm6]	A	G	1.635e^-4	0.71	UPSTREAM CG42708 INTRON CG42708
X	18862015	X_18862015_SNP [dm3] X_18967982_SNP [dm6]	A	G	1.643e^-4	0.71	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	9776680	3R_9776680_SNP [dm3] 3R_13950958_SNP [dm6]	T	A	1.646e^-4	0.71	NON_SYNONYMOUS_CODING CG9926
2L	9081939	2L_9081939_SNP [dm3] 2L_9081939_SNP [dm6]	T	C	1.649e^-4	0.71	INTERGENIC
2L	9081959	2L_9081959_SNP [dm3] 2L_9081959_SNP [dm6]	T	C	1.649e^-4	0.71	INTERGENIC
2L	6107338	2L_6107338_SNP [dm3] 2L_6107338_SNP [dm6]	C	T	1.654e^-4	0.71	INTRON stai
X	14822752	X_14822752_SNP [dm3] X_14928719_SNP [dm6]	C	T	1.654e^-4	0.71	SYNONYMOUS_CODING CG32591 INTRON Flo2
2R	1989436	2R_1989436_SNP [dm3] 2R_6101931_SNP [dm6]	G	T	1.661e^-4	0.71	INTRON EcR	TF binding site mE1_TFBS_Trl
2L	7163553	2L_7163553_DEL [dm3] 2L_7163553_DEL [dm6]	TAAAGTGTTTT...	T	1.674e^-4	0.71	INTERGENIC
2L	9082658	2L_9082658_SNP [dm3] 2L_9082658_SNP [dm6]	T	C	1.681e^-4	0.71	INTERGENIC
2R	2699812	2R_2699812_SNP [dm3] 2R_6812307_SNP [dm6]	C	T	1.707e^-4	0.71	UPSTREAM koi INTRON koi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	2773702	3L_2773702_SNP [dm3] 3L_2773702_SNP [dm6]	C	A	1.717e^-4	0.71	NON_SYNONYMOUS_CODING CG12093 UPSTREAM Atg2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	17406319	2L_17406319_SNP [dm3] 2L_17406319_SNP [dm6]	A	T	1.717e^-4	0.71	NON_SYNONYMOUS_CODING CLIP-190
X	5897605	X_5897605_SNP [dm3] X_6003572_SNP [dm6]	C	T	1.728e^-4	0.71	INTRON CR44498
2R	1377272	2R_1377272_SNP [dm3] 2R_5489767_SNP [dm6]	A	T	1.739e^-4	0.71	INTRON CG30440	transposable element FlyBase
2R	781078	2R_781078_SNP [dm3] 2R_4893573_SNP [dm6]	A	C	1.745e^-4	0.71	INTERGENIC	transposable element FlyBase
3R	21696851	3R_21696851_SNP [dm3] 3R_25871129_SNP [dm6]	C	T	1.750e^-4	0.71	UTR_3_PRIME CG5890	TF binding site mE1_TFBS_kn
2L	1184278	2L_1184278_SNP [dm3] 2L_1184278_SNP [dm6]	C	T	1.753e^-4	0.71	UPSTREAM CG5126 INTRON Tgt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14176376	3R_14176376_SNP [dm3] 3R_18350654_SNP [dm6]	G	A	1.774e^-4	0.71	INTRON CG15803
3R	14176379	3R_14176379_DEL [dm3] 3R_18350657_DEL [dm6]	TT	T	1.774e^-4	0.71	INTRON CG15803
2L	2979431	2L_2979431_SNP [dm3] 2L_2979431_SNP [dm6]	A	C	1.781e^-4	0.71	UPSTREAM CG9643 DOWNSTREAM CG3165 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3R	9776672	3R_9776672_SNP [dm3] 3R_13950950_SNP [dm6]	G	A	1.784e^-4	0.71	SYNONYMOUS_CODING CG9926
X	16410025	X_16410025_SNP [dm3] X_16515992_SNP [dm6]	A	G	1.784e^-4	0.71	INTRON para
2R	13042382	2R_13042382_SNP [dm3] 2R_17154877_SNP [dm6]	A	C	1.787e^-4	0.71	SYNONYMOUS_CODING CG17290
X	11321004	X_11321004_SNP [dm3] X_11426971_SNP [dm6]	T	A	1.788e^-4	0.71	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9082050	2L_9082050_SNP [dm3] 2L_9082050_SNP [dm6]	T	G	1.789e^-4	0.71	INTERGENIC
2L	9089968	2L_9089968_SNP [dm3] 2L_9089968_SNP [dm6]	A	G	1.789e^-4	0.71	DOWNSTREAM Toll-4 INTERGENIC
3R	19249087	3R_19249087_SNP [dm3] 3R_23423365_SNP [dm6]	T	C	1.790e^-4	0.71	INTRON CG4374	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	19249089	3R_19249089_SNP [dm3] 3R_23423367_SNP [dm6]	G	T	1.790e^-4	0.71	INTRON CG4374	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	19249126	3R_19249126_SNP [dm3] 3R_23423404_SNP [dm6]	A	C	1.790e^-4	0.71	INTRON CG4374	TF binding site mE1_TFBS_HSA
3L	2103403	3L_2103403_SNP [dm3] 3L_2103403_SNP [dm6]	G	T	1.797e^-4	0.71	INTRON sls	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	14338802	2R_14338802_SNP [dm3] 2R_18451297_SNP [dm6]	C	T	1.803e^-4	0.71	UTR_5_PRIME CG5190 UPSTREAM Prp19	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3L	10708665	3L_10708665_SNP [dm3] 3L_10715565_SNP [dm6]	G	T	1.806e^-4	0.71	INTERGENIC
2R	16224889	2R_16224889_DEL [dm3] 2R_20337384_DEL [dm6]	GATCTG	G	1.806e^-4	0.71	INTERGENIC
3L	4387574	3L_4387574_SNP [dm3] 3L_4387574_SNP [dm6]	G	C	1.807e^-4	0.71	INTRON slow
2L	9089593	2L_9089593_SNP [dm3] 2L_9089593_SNP [dm6]	C	T	1.811e^-4	0.71	DOWNSTREAM Toll-4 INTERGENIC
2R	11164943	2R_11164943_DEL [dm3] 2R_15277438_DEL [dm6]	ACAAAATGTTATGAAAATA...	A	1.830e^-4	0.71	INTRON Trpm
3L	16543046	3L_16543046_SNP [dm3] 3L_16549946_SNP [dm6]	G	A	1.845e^-4	0.71	INTERGENIC
2R	1641076	2R_1641076_SNP [dm3] 2R_5753571_SNP [dm6]	T	C	1.856e^-4	0.71	UPSTREAM l_2_09851 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	16945906	3R_16945906_SNP [dm3] 3R_21120184_SNP [dm6]	C	A	1.860e^-4	0.71	UTR_3_PRIME slmb DOWNSTREAM slmb
3R	14175944	3R_14175944_SNP [dm3] 3R_18350222_SNP [dm6]	G	T	1.868e^-4	0.71	INTRON CG15803
3R	18837487	3R_18837487_SNP [dm3] 3R_23011765_SNP [dm6]	T	A	1.880e^-4	0.71	UPSTREAM CG6688 DOWNSTREAM CR44225 INTERGENIC
2L	8398469	2L_8398469_DEL [dm3] 2L_8398469_DEL [dm6]	GTTTTCGT	G	1.890e^-4	0.71	UPSTREAM CG13386 DOWNSTREAM CG13385 INTERGENIC
X	7680981	X_7680981_SNP [dm3] X_7786948_SNP [dm6]	C	T	1.894e^-4	0.71	INTERGENIC
3R	12805246	3R_12805246_SNP [dm3] 3R_16979524_SNP [dm6]	C	T	1.901e^-4	0.71	SYNONYMOUS_CODING Ahcy89E
2R	7300628	2R_7300628_SNP [dm3] 2R_11413123_SNP [dm6]	C	T	1.902e^-4	0.71	INTRON Drip
2L	3318111	2L_3318111_SNP [dm3] 2L_3318111_SNP [dm6]	T	C	1.909e^-4	0.71	SYNONYMOUS_CODING CG3326 DOWNSTREAM CG3277
2L	7333427	2L_7333427_SNP [dm3] 2L_7333427_SNP [dm6]	A	C	1.910e^-4	0.71	UPSTREAM Wnt6 INTERGENIC
3R	10788835	3R_10788835_SNP [dm3] 3R_14963113_SNP [dm6]	C	A	1.916e^-4	0.71	INTERGENIC
X	12673659	X_12673659_SNP [dm3] X_12779626_SNP [dm6]	G	T	1.916e^-4	0.71	INTRON CG32647
X	4253089	X_4253089_SNP [dm3] X_4359056_SNP [dm6]	C	T	1.916e^-4	0.71	INTRON norpA
2R	16266407	2R_16266407_SNP [dm3] 2R_20378902_SNP [dm6]	G	A	1.918e^-4	0.71	INTERGENIC
2L	8984435	2L_8984435_SNP [dm3] 2L_8984435_SNP [dm6]	T	A	1.919e^-4	0.71	INTRON CG13101	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	9091053	2L_9091053_SNP [dm3] 2L_9091053_SNP [dm6]	G	A	1.927e^-4	0.71	INTERGENIC
2L	9091054	2L_9091054_SNP [dm3] 2L_9091054_SNP [dm6]	C	T	1.927e^-4	0.71	INTERGENIC
2L	22438512	2L_22438512_SNP [dm3] 2L_22545780_SNP [dm6]	T	C	1.929e^-4	0.71	INTRON CG17490
3L	3325683	3L_3325683_SNP [dm3] 3L_3325683_SNP [dm6]	G	A	1.930e^-4	0.71	UTR_5_PRIME CG11526 UPSTREAM PHGPx INTRON CG11526	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3325952	3L_3325952_SNP [dm3] 3L_3325952_SNP [dm6]	G	T	1.930e^-4	0.71	UTR_5_PRIME CG11526 UPSTREAM PHGPx & 1 other INTRON CG11526	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3326109	3L_3326109_SNP [dm3] 3L_3326109_SNP [dm6]	C	T	1.930e^-4	0.71	UPSTREAM PHGPx & 1 other INTRON CG11526	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
2R	10807334	2R_10807334_INS [dm3] 2R_14919829_INS [dm6]	A	AC	1.932e^-4	0.71	INTRON CG10249	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	10807352	2R_10807352_SNP [dm3] 2R_14919847_SNP [dm6]	A	G	1.932e^-4	0.71	INTRON CG10249	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	9671553	2R_9671553_SNP [dm3] 2R_13784048_SNP [dm6]	T	A	1.938e^-4	0.71	INTRON Cpr50Ca EXON CR43810
3L	8684970	3L_8684970_SNP [dm3] 3L_8691870_SNP [dm6]	A	G	1.946e^-4	0.71	UPSTREAM CR44526 INTERGENIC
2R	8188499	2R_8188499_SNP [dm3] 2R_12300994_SNP [dm6]	C	T	1.953e^-4	0.71	SPLICE_SITE_REGION CG8850 DOWNSTREAM CG42700 INTRON CG8850	TF binding site mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	14189776	3R_14189776_SNP [dm3] 3R_18364054_SNP [dm6]	A	G	1.962e^-4	0.71	SYNONYMOUS_CODING CG7669 DOWNSTREAM WRNexo
2R	11321356	2R_11321356_SNP [dm3] 2R_15433851_SNP [dm6]	A	G	1.963e^-4	0.71	INTRON CG43729
3R	18837651	3R_18837651_SNP [dm3] 3R_23011929_SNP [dm6]	A	C	1.969e^-4	0.71	UPSTREAM CG6688 EXON CR44225	TF binding site mE1_TFBS_cad
3R	17296864	3R_17296864_SNP [dm3] 3R_21471142_SNP [dm6]	T	C	1.971e^-4	0.71	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9082602	2L_9082602_SNP [dm3] 2L_9082602_SNP [dm6]	T	A	1.973e^-4	0.71	INTERGENIC
2R	10972484	2R_10972484_SNP [dm3] 2R_15084979_SNP [dm6]	T	C	1.989e^-4	0.71	INTERGENIC
2R	12034400	2R_12034400_SNP [dm3] 2R_16146895_SNP [dm6]	T	C	1.990e^-4	0.71	DOWNSTREAM Aats-cys INTRON Ext2
2R	12034476	2R_12034476_SNP [dm3] 2R_16146971_SNP [dm6]	T	A	1.990e^-4	0.71	SYNONYMOUS_CODING Ext2
3R	19906102	3R_19906102_SNP [dm3] 3R_24080380_SNP [dm6]	T	A	1.992e^-4	0.71	INTRON 4EHP
2R	15125837	2R_15125837_SNP [dm3] 2R_19238332_SNP [dm6]	A	G	2.005e^-4	0.71	INTRON cora
X	13923286	X_13923286_SNP [dm3] X_14029253_SNP [dm6]	A	G	2.008e^-4	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9453218	X_9453218_SNP [dm3] X_9559185_SNP [dm6]	A	G	2.009e^-4	0.71	SYNONYMOUS_CODING Cubn UPSTREAM CR42767	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5910407	2L_5910407_SNP [dm3] 2L_5910407_SNP [dm6]	T	C	2.017e^-4	0.71	UPSTREAM CG14000 INTRON bchs	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	8759360	X_8759360_SNP [dm3] X_8865327_SNP [dm6]	T	G	2.019e^-4	0.71	INTRON CG12075	TF binding site mE1_TFBS_kn
3R	21697798	3R_21697798_SNP [dm3] 3R_25872076_SNP [dm6]	G	A	2.032e^-4	0.71	UTR_3_PRIME CG5890 DOWNSTREAM Tsp96F
2L	9779245	2L_9779245_SNP [dm3] 2L_9779245_SNP [dm6]	G	A	2.034e^-4	0.71	INTERGENIC
X	2713502	X_2713502_SNP [dm3] X_2819469_SNP [dm6]	A	T	2.040e^-4	0.71	INTRON kirre
X	17578794	X_17578794_SNP [dm3] X_17684761_SNP [dm6]	C	A	2.044e^-4	0.71	INTRON chas
2L	12633942	2L_12633942_SNP [dm3] 2L_12633942_SNP [dm6]	T	C	2.051e^-4	0.71	INTRON Ref2	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	22466230	2L_22466230_SNP [dm3] 2L_22573498_SNP [dm6]	A	C	2.052e^-4	0.71	INTERGENIC
2L	22466234	2L_22466234_SNP [dm3] 2L_22573502_SNP [dm6]	C	A	2.052e^-4	0.71	INTERGENIC
2L	22466236	2L_22466236_SNP [dm3] 2L_22573504_SNP [dm6]	C	A	2.052e^-4	0.71	INTERGENIC
X	17361461	X_17361461_SNP [dm3] X_17467428_SNP [dm6]	C	A	2.060e^-4	0.71	INTRON CG43658
2L	4169805	2L_4169805_SNP [dm3] 2L_4169805_SNP [dm6]	C	T	2.070e^-4	0.71	INTERGENIC
3L	634725	3L_634725_SNP [dm3] 3L_634725_SNP [dm6]	T	C	2.073e^-4	0.71	EXON CR43334	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4583459	3R_4583459_SNP [dm3] 3R_8757737_SNP [dm6]	G	A	2.073e^-4	0.71	INTRON CG11768 & 1 other
3R	4583689	3R_4583689_SNP [dm3] 3R_8757967_SNP [dm6]	G	A	2.073e^-4	0.71	INTRON CG11768 & 1 other
X	17949626	X_17949626_SNP [dm3] X_18055593_SNP [dm6]	A	T	2.078e^-4	0.71	INTRON Sh
2L	22930324	2L_22930324_SNP [dm3] 2L_23037592_SNP [dm6]	T	C	2.080e^-4	0.71	INTERGENIC
2R	2764832	2R_2764832_SNP [dm3] 2R_6877327_SNP [dm6]	T	C	2.102e^-4	0.71	SYNONYMOUS_CODING Spn42Da INTRON CR44169
2R	17880969	2R_17880969_SNP [dm3] 2R_21993464_SNP [dm6]	T	A	2.121e^-4	0.71	INTRON CG34370
2R	17882002	2R_17882002_SNP [dm3] 2R_21994497_SNP [dm6]	T	C	2.125e^-4	0.71	INTRON CG34370
2R	19387797	2R_19387797_SNP [dm3] 2R_23500274_SNP [dm6]	T	A	2.129e^-4	0.71	SYNONYMOUS_CODING CG13558	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	5522708	2L_5522708_SNP [dm3] 2L_5522708_SNP [dm6]	T	G	2.130e^-4	0.71	INTRON CG7371	TF binding site mE1_TFBS_sens
2L	13922335	2L_13922335_SNP [dm3] 2L_13922335_SNP [dm6]	G	A	2.138e^-4	0.71	SYNONYMOUS_CODING CG16886 INTRON Ance-3	TF binding site mE1_TFBS_cad
3L	13947661	3L_13947661_SNP [dm3] 3L_13954561_SNP [dm6]	C	A	2.138e^-4	0.71	INTRON CG32137
2R	4773319	2R_4773319_SNP [dm3] 2R_8885814_SNP [dm6]	C	T	2.139e^-4	0.71	SYNONYMOUS_CODING RyR	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11798002	2R_11798002_SNP [dm3] 2R_15910497_SNP [dm6]	G	C	2.156e^-4	0.71	INTRON sli
3L	3501532	3L_3501532_DEL [dm3] 3L_3501532_DEL [dm6]	ACGGAAA	A	2.158e^-4	0.71	INTRON CG42324
2R	14369621	2R_14369621_SNP [dm3] 2R_18482116_SNP [dm6]	C	T	2.162e^-4	0.71	INTRON CG30116
3R	25799162	3R_25799162_SNP [dm3] 3R_29973440_SNP [dm6]	C	T	2.162e^-4	0.71	INTERGENIC
3R	25799207	3R_25799207_SNP [dm3] 3R_29973485_SNP [dm6]	G	A	2.162e^-4	0.71	INTERGENIC
3L	22355129	3L_22355129_SNP [dm3] 3L_22362029_SNP [dm6]	G	A	2.172e^-4	0.71	INTRON Ten-m	TF binding site mE1_TFBS_HSA
2L	9082765	2L_9082765_SNP [dm3] 2L_9082765_SNP [dm6]	T	A	2.182e^-4	0.71	INTERGENIC
2L	547786	2L_547786_SNP [dm3] 2L_547786_SNP [dm6]	C	A	2.186e^-4	0.71	SYNONYMOUS_CODING Ets21C DOWNSTREAM nAChRbeta3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25729457	3R_25729457_SNP [dm3] 3R_29903735_SNP [dm6]	C	T	2.187e^-4	0.71	NON_SYNONYMOUS_CODING CG15517 DOWNSTREAM CG31038	TF binding site mE1_TFBS_bab1
X	15043341	X_15043341_SNP [dm3] X_15149308_SNP [dm6]	T	G	2.201e^-4	0.71	INTRON CG9095
2R	19393157	2R_19393157_SNP [dm3] 2R_23505634_SNP [dm6]	C	G	2.205e^-4	0.71	INTERGENIC
2R	19393160	2R_19393160_SNP [dm3] 2R_23505637_SNP [dm6]	G	A	2.205e^-4	0.71	INTERGENIC
3L	10943731	3L_10943731_SNP [dm3] 3L_10950631_SNP [dm6]	A	C	2.207e^-4	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8764350	2L_8764350_DEL [dm3] 2L_8764350_DEL [dm6]	AAATA	A	2.211e^-4	0.71	DOWNSTREAM CG9463 INTERGENIC
3R	25537608	3R_25537608_SNP [dm3] 3R_29711886_SNP [dm6]	A	C	2.213e^-4	0.71	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	4025011	3L_4025011_SNP [dm3] 3L_4025011_SNP [dm6]	A	G	2.213e^-4	0.71	SYNONYMOUS_CODING CG11594
X	17945059	X_17945059_SNP [dm3] X_18051026_SNP [dm6]	A	T	2.218e^-4	0.71	INTRON Sh	TF binding site BDTNP1_TFBS_dl
2R	2826981	2R_2826981_SNP [dm3] 2R_6939476_SNP [dm6]	A	G	2.220e^-4	0.71	INTRON mim
3L	2104653	3L_2104653_SNP [dm3] 3L_2104653_SNP [dm6]	A	C	2.235e^-4	0.71	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_chinmo
3L	19957162	3L_19957162_DEL [dm3] 3L_19964062_DEL [dm6]	AACTTTAAG	T	2.243e^-4	0.71	INTRON Ac76E
3L	12632003	3L_12632003_SNP [dm3] 3L_12638903_SNP [dm6]	T	A	2.249e^-4	0.71	INTRON CR32111
3L	13895811	3L_13895811_SNP [dm3] 3L_13902711_SNP [dm6]	C	A	2.250e^-4	0.71	UTR_5_PRIME dysc
3R	12805156	3R_12805156_SNP [dm3] 3R_16979434_SNP [dm6]	T	C	2.253e^-4	0.71	INTRON Ahcy89E
2L	9087903	2L_9087903_SNP [dm3] 2L_9087903_SNP [dm6]	G	A	2.259e^-4	0.71	NON_SYNONYMOUS_CODING Toll-4	TF binding site BDTNP1_TFBS_twi
X	4792339	X_4792339_SNP [dm3] X_4898306_SNP [dm6]	G	A	2.280e^-4	0.71	INTRON CG42594
X	4792341	X_4792341_INS [dm3] X_4898308_INS [dm6]	G	GT	2.280e^-4	0.71	INTRON CG42594
X	4792344	X_4792344_DEL [dm3] X_4898311_DEL [dm6]	CAGTATTAAGTAT...	C	2.280e^-4	0.71	INTRON CG42594
X	4792381	X_4792381_SNP [dm3] X_4898348_SNP [dm6]	A	G	2.280e^-4	0.71	INTRON CG42594
2R	1644082	2R_1644082_SNP [dm3] 2R_5756577_SNP [dm6]	A	G	2.285e^-4	0.71	DOWNSTREAM l_2_09851 INTERGENIC
3L	3789660	3L_3789660_SNP [dm3] 3L_3789660_SNP [dm6]	T	G	2.296e^-4	0.71	INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	6826820	2L_6826820_SNP [dm3] 2L_6826820_SNP [dm6]	G	A	2.300e^-4	0.71	INTRON sens-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	9089398	2L_9089398_SNP [dm3] 2L_9089398_SNP [dm6]	C	A	2.300e^-4	0.71	NON_SYNONYMOUS_CODING Toll-4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9093394	2L_9093394_SNP [dm3] 2L_9093394_SNP [dm6]	A	T	2.300e^-4	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
2L	18955046	2L_18955046_SNP [dm3] 2L_18955046_SNP [dm6]	A	T	2.311e^-4	0.71	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC
2L	22894561	2L_22894561_SNP [dm3] 2L_23001829_SNP [dm6]	G	T	2.313e^-4	0.71	INTRON Cht3
3L	3595118	3L_3595118_SNP [dm3] 3L_3595118_SNP [dm6]	G	C	2.314e^-4	0.71	INTRON Eip63E
2R	1910231	2R_1910231_SNP [dm3] 2R_6022726_SNP [dm6]	G	C	2.325e^-4	0.71	NON_SYNONYMOUS_CODING dream	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6167952	2R_6167952_SNP [dm3] 2R_10280447_SNP [dm6]	C	G	2.326e^-4	0.71	NON_SYNONYMOUS_CODING CAP INTRON CAP	TF binding site mE1_TFBS_chinmo
X	17968527	X_17968527_SNP [dm3] X_18074494_SNP [dm6]	C	T	2.328e^-4	0.71	SYNONYMOUS_CODING Dhc16F	TF binding site mE1_TFBS_chinmo
2L	22910902	2L_22910902_DEL [dm3] 2L_23018170_DEL [dm6]	TT	T	2.332e^-4	0.71	INTRON Cht3
X	15081206	X_15081206_SNP [dm3] X_15187173_SNP [dm6]	T	G	2.334e^-4	0.71	NON_SYNONYMOUS_CODING CG43737
2L	5913051	2L_5913051_SNP [dm3] 2L_5913051_SNP [dm6]	G	T	2.339e^-4	0.71	SYNONYMOUS_CODING bchs
X	2733351	X_2733351_SNP [dm3] X_2839318_SNP [dm6]	A	T	2.347e^-4	0.71	INTRON kirre
2R	7561386	2R_7561386_SNP [dm3] 2R_11673881_SNP [dm6]	C	T	2.354e^-4	0.71	INTRON Roc2 & 1 other
3R	15060057	3R_15060057_SNP [dm3] 3R_19234335_SNP [dm6]	T	C	2.359e^-4	0.71	SYNONYMOUS_CODING unc79
2R	5193297	2R_5193297_SNP [dm3] 2R_9305792_SNP [dm6]	A	C	2.365e^-4	0.71	INTRON Myd88	TF binding site mE1_TFBS_cad
X	9449404	X_9449404_INS [dm3] X_9555371_INS [dm6]	A	ACTT	2.370e^-4	0.71	UTR_3_PRIME RpS28b DOWNSTREAM CG15317 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	22446292	2L_22446292_INS [dm3] 2L_22553560_INS [dm6]	T	TAGCT	2.374e^-4	0.71	UTR_3_PRIME CG17493	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3792438	3L_3792438_SNP [dm3] 3L_3792438_SNP [dm6]	C	T	2.380e^-4	0.71	DOWNSTREAM CG32266 INTRON CG32264
3R	11998097	3R_11998097_SNP [dm3] 3R_16172375_SNP [dm6]	G	T	2.389e^-4	0.71	SYNONYMOUS_CODING CG8925 DOWNSTREAM CG6006
3R	19302503	3R_19302503_SNP [dm3] 3R_23476781_SNP [dm6]	A	G	2.396e^-4	0.71	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	10741671	3L_10741671_SNP [dm3] 3L_10748571_SNP [dm6]	T	A	2.400e^-4	0.71	INTERGENIC
3L	10741682	3L_10741682_SNP [dm3] 3L_10748582_SNP [dm6]	C	T	2.400e^-4	0.71	INTERGENIC
2L	16170876	2L_16170876_SNP [dm3] 2L_16170876_SNP [dm6]	T	G	2.402e^-4	0.71	NON_SYNONYMOUS_CODING Ca-alpha1D INTRON Ca-alpha1D	TF binding site mE1_TFBS_cad
2L	3012592	2L_3012592_SNP [dm3] 2L_3012592_SNP [dm6]	T	C	2.412e^-4	0.71	INTRON CG17265	TF binding site mE1_TFBS_inv
2R	2395379	2R_2395379_SNP [dm3] 2R_6507874_SNP [dm6]	T	C	2.412e^-4	0.71	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	18784082	2R_18784082_SNP [dm3] 2R_22896559_SNP [dm6]	A	G	2.416e^-4	0.71	UTR_5_PRIME nahoda DOWNSTREAM CG3700 INTRON nahoda	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	13968541	3L_13968541_SNP [dm3] 3L_13975441_SNP [dm6]	A	C	2.423e^-4	0.71	INTRON Hsc70-1
3L	13968543	3L_13968543_SNP [dm3] 3L_13975443_SNP [dm6]	G	A	2.423e^-4	0.71	INTRON Hsc70-1
3L	13968566	3L_13968566_SNP [dm3] 3L_13975466_SNP [dm6]	A	G	2.423e^-4	0.71	INTRON Hsc70-1
3L	13968571	3L_13968571_SNP [dm3] 3L_13975471_SNP [dm6]	A	T	2.423e^-4	0.71	INTRON Hsc70-1
3L	13968584	3L_13968584_SNP [dm3] 3L_13975484_SNP [dm6]	A	C	2.423e^-4	0.71	INTRON Hsc70-1
3L	10116526	3L_10116526_SNP [dm3] 3L_10123426_SNP [dm6]	C	T	2.425e^-4	0.71	INTRON dpr6
3L	13968460	3L_13968460_SNP [dm3] 3L_13975360_SNP [dm6]	G	T	2.431e^-4	0.71	INTRON Hsc70-1
2R	8778014	2R_8778014_SNP [dm3] 2R_12890509_SNP [dm6]	G	A	2.435e^-4	0.71	INTRON vg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	11160770	2R_11160770_SNP [dm3] 2R_15273265_SNP [dm6]	G	A	2.438e^-4	0.71	INTRON Trpm
2R	777982	2R_777982_SNP [dm3] 2R_4890477_SNP [dm6]	C	G	2.443e^-4	0.71	INTERGENIC	transposable element FlyBase
3L	9623419	3L_9623419_INS [dm3] 3L_9630319_INS [dm6]	C	CGAGATTGAGGCC...	2.448e^-4	0.71	INTRON CG8336	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4026980	2L_4026980_SNP [dm3] 2L_4026980_SNP [dm6]	G	A	2.469e^-4	0.71	INTERGENIC
2L	9982510	2L_9982510_SNP [dm3] 2L_9982510_SNP [dm6]	C	T	2.472e^-4	0.71	INTERGENIC	regulatory region REDfly_CRMs
2L	22870146	2L_22870146_SNP [dm3] 2L_22977414_SNP [dm6]	A	T	2.473e^-4	0.71	INTERGENIC
2R	15080531	2R_15080531_SNP [dm3] 2R_19193026_SNP [dm6]	T	C	2.478e^-4	0.71	INTRON hppy
2R	17883359	2R_17883359_SNP [dm3] 2R_21995854_SNP [dm6]	G	A	2.478e^-4	0.71	INTRON CG34370
3L	10943321	3L_10943321_SNP [dm3] 3L_10950221_SNP [dm6]	A	G	2.478e^-4	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17939057	2R_17939057_SNP [dm3] 2R_22051552_SNP [dm6]	T	G	2.485e^-4	0.71	INTERGENIC
3R	18604277	3R_18604277_SNP [dm3] 3R_22778555_SNP [dm6]	T	G	2.499e^-4	0.71	INTRON CG7029 EXON CR43654	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	8442539	3R_8442539_SNP [dm3] 3R_12616817_SNP [dm6]	C	T	2.516e^-4	0.71	INTERGENIC
3L	4093274	3L_4093274_SNP [dm3] 3L_4093274_SNP [dm6]	G	T	2.520e^-4	0.71	NON_SYNONYMOUS_CODING CG14990 DOWNSTREAM CG14989	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7703202	2L_7703202_SNP [dm3] 2L_7703202_SNP [dm6]	C	T	2.524e^-4	0.71	NON_SYNONYMOUS_CODING Tep3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	12289097	2L_12289097_SNP [dm3] 2L_12289097_SNP [dm6]	C	G	2.528e^-4	0.71	UTR_5_PRIME aret INTRON aret	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	2104209	3L_2104209_SNP [dm3] 3L_2104209_SNP [dm6]	C	T	2.533e^-4	0.71	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	11744288	X_11744288_SNP [dm3] X_11850255_SNP [dm6]	A	G	2.538e^-4	0.71	UPSTREAM CR45619 DOWNSTREAM p24-1 INTERGENIC
2R	9646803	2R_9646803_SNP [dm3] 2R_13759298_SNP [dm6]	T	A	2.542e^-4	0.71	DOWNSTREAM CG6280 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	19309850	2R_19309850_SNP [dm3] 2R_23422327_SNP [dm6]	A	T	2.543e^-4	0.71	INTRON CG9815
2R	1669991	2R_1669991_SNP [dm3] 2R_5782486_SNP [dm6]	T	A	2.550e^-4	0.71	UTR_5_PRIME ZnT41F INTRON ZnT41F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	1670970	2R_1670970_SNP [dm3] 2R_5783465_SNP [dm6]	G	T	2.550e^-4	0.71	UPSTREAM ZnT41F INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	2742763	2R_2742763_SNP [dm3] 2R_6855258_SNP [dm6]	C	G	2.562e^-4	0.71	INTERGENIC
3R	25200257	3R_25200257_SNP [dm3] 3R_29374535_SNP [dm6]	G	A	2.577e^-4	0.71	INTERGENIC
2R	8983063	2R_8983063_SNP [dm3] 2R_13095558_SNP [dm6]	A	C	2.582e^-4	0.71	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
2L	7333411	2L_7333411_SNP [dm3] 2L_7333411_SNP [dm6]	G	A	2.583e^-4	0.71	UPSTREAM Wnt6 INTERGENIC
X	6916523	X_6916523_SNP [dm3] X_7022490_SNP [dm6]	G	C	2.584e^-4	0.71	UTR_3_PRIME CG12541
2R	8564723	2R_8564723_SNP [dm3] 2R_12677218_SNP [dm6]	T	C	2.587e^-4	0.71	UPSTREAM CG42708 INTRON CG42708
3R	21780956	3R_21780956_SNP [dm3] 3R_25955234_SNP [dm6]	G	A	2.592e^-4	0.71	INTRON CCAP-R	TF binding site mE1_TFBS_zfh1
3L	2581055	3L_2581055_SNP [dm3] 3L_2581055_SNP [dm6]	G	A	2.597e^-4	0.71	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	19307611	2R_19307611_SNP [dm3] 2R_23420088_SNP [dm6]	A	G	2.605e^-4	0.71	UPSTREAM CG9812 INTERGENIC
X	2219064	X_2219064_SNP [dm3] X_2325031_SNP [dm6]	G	A	2.606e^-4	0.71	NON_SYNONYMOUS_CODING CG14050 INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	18119005	3L_18119005_SNP [dm3] 3L_18125905_SNP [dm6]	C	A	2.607e^-4	0.71	INTERGENIC
2R	8983065	2R_8983065_SNP [dm3] 2R_13095560_SNP [dm6]	A	G	2.611e^-4	0.71	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
2L	2798608	2L_2798608_DEL [dm3] 2L_2798608_DEL [dm6]	TA	T	2.612e^-4	0.71	UTR_5_PRIME Syt1 DOWNSTREAM CR43821 INTRON Syt1	TF binding site BDTNP1_TFBS_dl
3R	3766420	3R_3766420_SNP [dm3] 3R_7940698_SNP [dm6]	A	T	2.616e^-4	0.71	INTRON dsx	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10046812	2L_10046812_SNP [dm3] 2L_10046812_SNP [dm6]	C	T	2.624e^-4	0.71	INTERGENIC
2L	6630640	2L_6630640_SNP [dm3] 2L_6630640_SNP [dm6]	G	A	2.625e^-4	0.71	INTRON Oatp26F
2R	17881959	2R_17881959_SNP [dm3] 2R_21994454_SNP [dm6]	T	G	2.629e^-4	0.71	INTRON CG34370
2L	22961887	2L_22961887_SNP [dm3] 2L_23069155_SNP [dm6]	G	A	2.630e^-4	0.71	UPSTREAM Spf45 EXON CR43242
3R	24872376	3R_24872376_SNP [dm3] 3R_29046654_SNP [dm6]	G	A	2.635e^-4	0.71	UTR_3_PRIME Pkc98E
3L	3132115	3L_3132115_SNP [dm3] 3L_3132115_SNP [dm6]	G	A	2.635e^-4	0.71	INTRON CG11537
X	15043152	X_15043152_SNP [dm3] X_15149119_SNP [dm6]	T	C	2.638e^-4	0.71	INTRON CG9095
3R	22441802	3R_22441802_DEL [dm3] 3R_26616080_DEL [dm6]	GTC	G	2.648e^-4	0.71	INTERGENIC
3L	12790968	3L_12790968_SNP [dm3] 3L_12797868_SNP [dm6]	T	G	2.655e^-4	0.71	INTRON Atg1
2L	11337397	2L_11337397_SNP [dm3] 2L_11337397_SNP [dm6]	G	T	2.658e^-4	0.71	INTERGENIC
3R	9946212	3R_9946212_SNP [dm3] 3R_14120490_SNP [dm6]	T	G	2.661e^-4	0.71	INTRON Abi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4677058	3L_4677058_SNP [dm3] 3L_4677058_SNP [dm6]	C	G	2.675e^-4	0.71	UPSTREAM CG34266 INTRON axo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12734284	X_12734284_SNP [dm3] X_12840251_SNP [dm6]	A	T	2.675e^-4	0.71	INTRON Pde9
2R	14085335	2R_14085335_SNP [dm3] 2R_18197830_SNP [dm6]	C	T	2.678e^-4	0.71	INTERGENIC
2L	1900869	2L_1900869_SNP [dm3] 2L_1900869_SNP [dm6]	T	A	2.685e^-4	0.71	INTRON CG7337
X	4792322	X_4792322_SNP [dm3] X_4898289_SNP [dm6]	G	C	2.688e^-4	0.71	INTRON CG42594
2L	7163669	2L_7163669_SNP [dm3] 2L_7163669_SNP [dm6]	T	C	2.690e^-4	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	14162521	3R_14162521_SNP [dm3] 3R_18336799_SNP [dm6]	A	T	2.692e^-4	0.71	INTRON CG15803
2R	781070	2R_781070_SNP [dm3] 2R_4893565_SNP [dm6]	T	G	2.698e^-4	0.71	INTERGENIC	transposable element FlyBase
X	19949492	X_19949492_SNP [dm3] X_20055459_SNP [dm6]	A	G	2.711e^-4	0.71	INTRON Dop2R
2R	5416208	2R_5416208_SNP [dm3] 2R_9528703_SNP [dm6]	C	T	2.734e^-4	0.71	INTRON brp
3R	17020875	3R_17020875_SNP [dm3] 3R_21195153_SNP [dm6]	A	T	2.735e^-4	0.71	INTRON SNF4Agamma
3R	3546345	3R_3546345_SNP [dm3] 3R_7720623_SNP [dm6]	T	G	2.736e^-4	0.71	INTRON CR44260
3R	3546353	3R_3546353_SNP [dm3] 3R_7720631_SNP [dm6]	A	T	2.736e^-4	0.71	INTRON CR44260
3L	11463578	3L_11463578_SNP [dm3] 3L_11470478_SNP [dm6]	A	T	2.738e^-4	0.71	INTERGENIC
3L	9373190	3L_9373190_SNP [dm3] 3L_9380090_SNP [dm6]	T	C	2.741e^-4	0.71	UPSTREAM Hsp67Ba EXON CR43481	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	22922094	2L_22922094_SNP [dm3] 2L_23029362_SNP [dm6]	T	C	2.748e^-4	0.71	INTERGENIC
2R	20195556	2R_20195556_SNP [dm3] 2R_24308033_SNP [dm6]	T	G	2.755e^-4	0.71	INTRON betaTub60D	regulatory region REDfly_CRMs
2R	13074366	2R_13074366_DEL [dm3] 2R_17186861_DEL [dm6]	GGAG	G	2.760e^-4	0.71	DOWNSTREAM CR44388 INTERGENIC
2R	12035338	2R_12035338_SNP [dm3] 2R_16147833_SNP [dm6]	A	G	2.764e^-4	0.71	SYNONYMOUS_CODING Ext2 DOWNSTREAM CG10731	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12035347	2R_12035347_SNP [dm3] 2R_16147842_SNP [dm6]	C	T	2.764e^-4	0.71	SYNONYMOUS_CODING Ext2 DOWNSTREAM CG10731	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5189154	2L_5189154_SNP [dm3] 2L_5189154_SNP [dm6]	C	T	2.779e^-4	0.71	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_HSA
2R	12034584	2R_12034584_SNP [dm3] 2R_16147079_SNP [dm6]	C	T	2.783e^-4	0.71	SYNONYMOUS_CODING Ext2
3L	4676845	3L_4676845_SNP [dm3] 3L_4676845_SNP [dm6]	T	A	2.801e^-4	0.71	UPSTREAM CG34266 INTRON axo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	22447343	2L_22447343_SNP [dm3] 2L_22554611_SNP [dm6]	C	T	2.804e^-4	0.71	UTR_3_PRIME CG17493
2R	2925082	2R_2925082_SNP [dm3] 2R_7037577_SNP [dm6]	A	G	2.805e^-4	0.71	DOWNSTREAM Tsp42Ei INTRON CG33914	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2701445	2L_2701445_SNP [dm3] 2L_2701445_SNP [dm6]	A	G	2.806e^-4	0.71	INTRON CG31690
2L	17537131	2L_17537131_SNP [dm3] 2L_17537131_SNP [dm6]	A	C	2.818e^-4	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20508781	3R_20508781_SNP [dm3] 3R_24683059_SNP [dm6]	A	C	2.823e^-4	0.71	INTRON slo
2L	22471560	2L_22471560_SNP [dm3] 2L_22578828_SNP [dm6]	C	T	2.830e^-4	0.71	UPSTREAM CG17494 INTERGENIC	TF binding site mE1_TFBS_zfh1
2R	17772404	2R_17772404_SNP [dm3] 2R_21884899_SNP [dm6]	T	C	2.832e^-4	0.71	INTRON Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	8684968	3L_8684968_SNP [dm3] 3L_8691868_SNP [dm6]	A	T	2.857e^-4	0.71	UPSTREAM CR44526 INTERGENIC
3L	8684973	3L_8684973_SNP [dm3] 3L_8691873_SNP [dm6]	A	T	2.857e^-4	0.71	UPSTREAM CR44526 INTERGENIC
2L	9082569	2L_9082569_SNP [dm3] 2L_9082569_SNP [dm6]	T	A	2.863e^-4	0.71	INTERGENIC
2L	15846556	2L_15846556_SNP [dm3] 2L_15846556_SNP [dm6]	G	A	2.868e^-4	0.71	UPSTREAM CR43763 INTERGENIC
2L	10063942	2L_10063942_DEL [dm3] 2L_10063942_DEL [dm6]	TGAAT	T	2.872e^-4	0.71	DOWNSTREAM CG44153 & 1 other INTERGENIC
2L	10194670	2L_10194670_SNP [dm3] 2L_10194670_SNP [dm6]	T	A	2.882e^-4	0.71	INTRON Sur
3L	9301442	3L_9301442_SNP [dm3] 3L_9308342_SNP [dm6]	G	T	2.887e^-4	0.71	INTERGENIC
2R	10624775	2R_10624775_INS [dm3] 2R_14737270_INS [dm6]	A	AAA	2.895e^-4	0.71	DOWNSTREAM CR43428 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	2979350	2L_2979350_SNP [dm3] 2L_2979350_SNP [dm6]	A	G	2.906e^-4	0.71	UPSTREAM CG9643 DOWNSTREAM CG3165 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14175917	3R_14175917_DEL [dm3] 3R_18350195_DEL [dm6]	ATGGA	A	2.909e^-4	0.71	INTRON CG15803
3L	10708465	3L_10708465_SNP [dm3] 3L_10715365_SNP [dm6]	T	G	2.910e^-4	0.71	INTERGENIC
3L	9623487	3L_9623487_SNP [dm3] 3L_9630387_SNP [dm6]	A	C	2.916e^-4	0.71	SYNONYMOUS_CODING CG8336	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9671545	2R_9671545_SNP [dm3] 2R_13784040_SNP [dm6]	C	T	2.917e^-4	0.71	INTRON Cpr50Ca EXON CR43810
2R	9671552	2R_9671552_SNP [dm3] 2R_13784047_SNP [dm6]	C	T	2.917e^-4	0.71	INTRON Cpr50Ca EXON CR43810
3L	3597882	3L_3597882_SNP [dm3] 3L_3597882_SNP [dm6]	C	T	2.927e^-4	0.71	INTRON Eip63E	TF binding site mE1_TFBS_cad
3R	14631963	3R_14631963_SNP [dm3] 3R_18806241_SNP [dm6]	C	A	2.939e^-4	0.71	SYNONYMOUS_CODING CG18208	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	787805	2R_787805_SNP [dm3] 2R_4900300_SNP [dm6]	C	T	2.939e^-4	0.71	INTRON CG44102	transposable element FlyBase
3R	24576873	3R_24576873_SNP [dm3] 3R_28751151_SNP [dm6]	A	T	2.943e^-4	0.71	SYNONYMOUS_CODING CG10000
3R	24576876	3R_24576876_SNP [dm3] 3R_28751154_SNP [dm6]	T	A	2.943e^-4	0.71	SYNONYMOUS_CODING CG10000
3R	19909981	3R_19909981_SNP [dm3] 3R_24084259_SNP [dm6]	A	G	2.945e^-4	0.71	INTRON 4EHP
2R	9646181	2R_9646181_SNP [dm3] 2R_13758676_SNP [dm6]	C	A	2.952e^-4	0.71	NON_SYNONYMOUS_CODING CG6280	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19211719	3R_19211719_SNP [dm3] 3R_23385997_SNP [dm6]	G	C	2.963e^-4	0.71	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	2398858	2R_2398858_DEL [dm3] 2R_6511353_DEL [dm6]	TATTT	C	2.963e^-4	0.71	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
2R	3905681	2R_3905681_SNP [dm3] 2R_8018176_SNP [dm6]	C	T	2.964e^-4	0.71	UPSTREAM CR45267 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	5119027	2R_5119027_SNP [dm3] 2R_9231522_SNP [dm6]	A	C	2.966e^-4	0.71	INTRON hig	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7989118	3L_7989118_SNP [dm3] 3L_7996018_SNP [dm6]	C	T	2.975e^-4	0.71	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	10225122	3R_10225122_SNP [dm3] 3R_14399400_SNP [dm6]	C	T	2.976e^-4	0.71	INTRON cv-c
3L	3789986	3L_3789986_SNP [dm3] 3L_3789986_SNP [dm6]	T	G	2.979e^-4	0.71	UPSTREAM CG32266 INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Trl
2L	6858710	2L_6858710_SNP [dm3] 2L_6858710_SNP [dm6]	A	C	2.982e^-4	0.71	SYNONYMOUS_CODING l_2_k09022	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	19906136	3R_19906136_SNP [dm3] 3R_24080414_SNP [dm6]	G	A	2.990e^-4	0.71	INTRON 4EHP
3R	26849301	3R_26849301_INS [dm3] 3R_31023579_INS [dm6]	C	CC	3.017e^-4	0.71	INTERGENIC
2L	17590153	2L_17590153_SNP [dm3] 2L_17590153_SNP [dm6]	C	T	3.020e^-4	0.71	UTR_5_PRIME Oli UPSTREAM CR44410 INTRON Oli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
2L	12780207	2L_12780207_SNP [dm3] 2L_12780207_SNP [dm6]	T	A	3.024e^-4	0.71	INTERGENIC
3R	8416113	3R_8416113_SNP [dm3] 3R_12590391_SNP [dm6]	C	T	3.040e^-4	0.71	INTRON Octbeta2R
2L	22438511	2L_22438511_SNP [dm3] 2L_22545779_SNP [dm6]	A	G	3.041e^-4	0.71	INTRON CG17490
2R	14336450	2R_14336450_SNP [dm3] 2R_18448945_SNP [dm6]	A	G	3.044e^-4	0.71	SYNONYMOUS_CODING CG30120 UTR_3_PRIME CG5189 INTRON Prp19	TF binding site mE1_TFBS_cad
3R	20137603	3R_20137603_SNP [dm3] 3R_24311881_SNP [dm6]	G	C	3.047e^-4	0.71	SYNONYMOUS_CODING crb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14050541	3R_14050541_SNP [dm3] 3R_18224819_SNP [dm6]	G	A	3.053e^-4	0.71	SYNONYMOUS_CODING CG7993 DOWNSTREAM CG7168	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13968469	3L_13968469_SNP [dm3] 3L_13975369_SNP [dm6]	A	C	3.053e^-4	0.71	INTRON Hsc70-1
2R	10676094	2R_10676094_SNP [dm3] 2R_14788589_SNP [dm6]	C	G	3.066e^-4	0.71	INTRON kn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	26662847	3R_26662847_SNP [dm3] 3R_30837125_SNP [dm6]	G	T	3.067e^-4	0.71	INTRON CG15544
3R	24970597	3R_24970597_SNP [dm3] 3R_29144875_SNP [dm6]	A	C	3.069e^-4	0.71	DOWNSTREAM CG14511 INTRON CG14516
2R	4065283	2R_4065283_SNP [dm3] 2R_8177778_SNP [dm6]	T	G	3.073e^-4	0.71	INTRON LRP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	17959683	X_17959683_SNP [dm3] X_18065650_SNP [dm6]	A	G	3.084e^-4	0.71	SYNONYMOUS_CODING Dhc16F
3L	10708572	3L_10708572_SNP [dm3] 3L_10715472_SNP [dm6]	T	A	3.085e^-4	0.71	INTERGENIC
3R	14191433	3R_14191433_SNP [dm3] 3R_18365711_SNP [dm6]	T	C	3.088e^-4	0.71	SYNONYMOUS_CODING WRNexo UPSTREAM Nup43	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_Ubx
3R	14191436	3R_14191436_SNP [dm3] 3R_18365714_SNP [dm6]	A	G	3.088e^-4	0.71	SYNONYMOUS_CODING WRNexo UPSTREAM Nup43	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_Ubx
2R	4133372	2R_4133372_SNP [dm3] 2R_8245867_SNP [dm6]	A	G	3.101e^-4	0.71	EXON CR44446	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
X	5716480	X_5716480_SNP [dm3] X_5822447_SNP [dm6]	T	C	3.102e^-4	0.71	INTRON CG15765	TF binding site mE1_TFBS_chinmo
3L	7399172	3L_7399172_SNP [dm3] 3L_7406072_SNP [dm6]	T	A	3.113e^-4	0.71	UPSTREAM pncr015:3L INTERGENIC
3L	7946994	3L_7946994_SNP [dm3] 3L_7953894_SNP [dm6]	C	A	3.117e^-4	0.71	INTERGENIC
3L	7947015	3L_7947015_SNP [dm3] 3L_7953915_SNP [dm6]	C	T	3.117e^-4	0.71	INTERGENIC
3L	7947019	3L_7947019_SNP [dm3] 3L_7953919_SNP [dm6]	T	A	3.117e^-4	0.71	INTERGENIC
3L	7947022	3L_7947022_SNP [dm3] 3L_7953922_SNP [dm6]	G	A	3.117e^-4	0.71	INTERGENIC
3L	7947032	3L_7947032_DEL [dm3] 3L_7953932_DEL [dm6]	TCATACACTTATGTTGT...	T	3.117e^-4	0.71	INTERGENIC
3L	7947051	3L_7947051_SNP [dm3] 3L_7953951_SNP [dm6]	T	A	3.117e^-4	0.71	INTERGENIC
2L	8186186	2L_8186186_SNP [dm3] 2L_8186186_SNP [dm6]	G	A	3.119e^-4	0.71	SYNONYMOUS_CODING Piezo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17092066	2L_17092066_SNP [dm3] 2L_17092066_SNP [dm6]	T	C	3.125e^-4	0.71	INTERGENIC
3R	9713419	3R_9713419_SNP [dm3] 3R_13887697_SNP [dm6]	C	T	3.126e^-4	0.71	INTERGENIC
2L	17533311	2L_17533311_SNP [dm3] 2L_17533311_SNP [dm6]	A	T	3.126e^-4	0.71	INTERGENIC
2L	3645187	2L_3645187_SNP [dm3] 2L_3645187_SNP [dm6]	T	A	3.135e^-4	0.71	INTRON for
2L	3232531	2L_3232531_SNP [dm3] 2L_3232531_SNP [dm6]	A	G	3.144e^-4	0.71	INTERGENIC
2R	12029894	2R_12029894_SNP [dm3] 2R_16142389_SNP [dm6]	G	C	3.145e^-4	0.71	NON_SYNONYMOUS_CODING CG30094 UPSTREAM Aats-cys DOWNSTREAM Got1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3L	3995578	3L_3995578_SNP [dm3] 3L_3995578_SNP [dm6]	A	G	3.160e^-4	0.71	INTERGENIC
3R	27433239	3R_27433239_SNP [dm3] 3R_31607517_SNP [dm6]	G	C	3.168e^-4	0.71	INTRON CycG	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	12969820	2L_12969820_SNP [dm3] 2L_12969820_SNP [dm6]	C	T	3.169e^-4	0.71	INTERGENIC
3L	5045111	3L_5045111_SNP [dm3] 3L_5045111_SNP [dm6]	A	T	3.173e^-4	0.71	INTRON Con
X	2618080	X_2618080_SNP [dm3] X_2724047_SNP [dm6]	A	G	3.174e^-4	0.71	UTR_3_PRIME fs_1_Yb UPSTREAM fs_1_Ya	TF binding site mE1_TFBS_cad
2R	19871575	2R_19871575_SNP [dm3] 2R_23984052_SNP [dm6]	C	A	3.181e^-4	0.71	NON_SYNONYMOUS_CODING Sox14	TF binding site mE1_TFBS_chinmo
3L	11907468	3L_11907468_DEL [dm3] 3L_11914368_DEL [dm6]	ATGTA	A	3.185e^-4	0.71	INTRON CG44837
2R	7957648	2R_7957648_SNP [dm3] 2R_12070143_SNP [dm6]	T	C	3.187e^-4	0.71	INTRON CG8888
3R	21494575	3R_21494575_SNP [dm3] 3R_25668853_SNP [dm6]	A	C	3.189e^-4	0.71	INTRON Lgr3
2R	7822745	2R_7822745_SNP [dm3] 2R_11935240_SNP [dm6]	A	G	3.198e^-4	0.71	INTERGENIC
2L	14425061	2L_14425061_SNP [dm3] 2L_14425061_SNP [dm6]	A	T	3.206e^-4	0.71	INTRON Cpr35B	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	10636701	3L_10636701_DEL [dm3] 3L_10643601_DEL [dm6]	CACTAGATTTC...	C	3.206e^-4	0.71	DOWNSTREAM CG14154 INTRON CG32066 & 1 other
2L	1462166	2L_1462166_SNP [dm3] 2L_1462166_SNP [dm6]	A	T	3.209e^-4	0.71	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	9421316	X_9421316_SNP [dm3] X_9527283_SNP [dm6]	A	C	3.210e^-4	0.71	INTRON CG32700
2L	3558669	2L_3558669_SNP [dm3] 2L_3558669_SNP [dm6]	A	G	3.219e^-4	0.71	INTERGENIC
X	18849696	X_18849696_SNP [dm3] X_18955663_SNP [dm6]	T	C	3.221e^-4	0.71	INTRON CG43759
X	14011279	X_14011279_INS [dm3] X_14117246_INS [dm6]	A	ATA	3.227e^-4	0.71	DOWNSTREAM tRNA:S7:12Eg & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7902475	2L_7902475_SNP [dm3] 2L_7902475_SNP [dm6]	C	T	3.249e^-4	0.71	INTRON Snoo
X	17431540	X_17431540_SNP [dm3] X_17537507_SNP [dm6]	G	T	3.251e^-4	0.71	INTRON CG43658
2R	18274570	2R_18274570_SNP [dm3] 2R_22387065_SNP [dm6]	T	G	3.259e^-4	0.71	UPSTREAM CR44757 INTRON CG13506
2L	2081979	2L_2081979_SNP [dm3] 2L_2081979_SNP [dm6]	T	C	3.264e^-4	0.71	UPSTREAM CR44808 DOWNSTREAM CG12674 INTRON dpr3	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	10708682	3L_10708682_DEL [dm3] 3L_10715582_DEL [dm6]	TA	T	3.274e^-4	0.71	INTERGENIC
2L	12171966	2L_12171966_SNP [dm3] 2L_12171966_SNP [dm6]	T	C	3.279e^-4	0.71	DOWNSTREAM CG17217 INTRON CG6583	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	12171989	2L_12171989_DEL [dm3] 2L_12171989_DEL [dm6]	ACACCTA	A	3.279e^-4	0.71	UPSTREAM crok DOWNSTREAM CG17217 INTRON CG6583	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	12172067	2L_12172067_SNP [dm3] 2L_12172067_SNP [dm6]	T	C	3.279e^-4	0.71	UPSTREAM crok DOWNSTREAM CG17217 INTRON CG6583	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	12172070	2L_12172070_SNP [dm3] 2L_12172070_SNP [dm6]	G	A	3.279e^-4	0.71	UPSTREAM crok DOWNSTREAM CG17217 INTRON CG6583	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	3232530	2L_3232530_SNP [dm3] 2L_3232530_SNP [dm6]	A	G	3.284e^-4	0.71	INTERGENIC
2L	9985240	2L_9985240_INS [dm3] 2L_9985240_INS [dm6]	C	CGAAAACTTAACATTTACAA...	3.290e^-4	0.71	UPSTREAM CR13130 INTRON bib	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15211965	2R_15211965_SNP [dm3] 2R_19324460_SNP [dm6]	A	G	3.290e^-4	0.71	INTRON Rgk1
2L	10077044	2L_10077044_SNP [dm3] 2L_10077044_SNP [dm6]	G	A	3.295e^-4	0.71	INTRON CG44153	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2580387	3L_2580387_SNP [dm3] 3L_2580387_SNP [dm6]	T	A	3.297e^-4	0.71	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	21023583	2R_21023583_SNP [dm3] 2R_25136060_SNP [dm6]	G	A	3.302e^-4	0.71	INTRON lov	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	14339041	2R_14339041_SNP [dm3] 2R_18451536_SNP [dm6]	C	T	3.309e^-4	0.71	NON_SYNONYMOUS_CODING CG5190 UPSTREAM Prp19	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	17346503	2L_17346503_SNP [dm3] 2L_17346503_SNP [dm6]	G	T	3.310e^-4	0.71	INTERGENIC
2L	9093077	2L_9093077_SNP [dm3] 2L_9093077_SNP [dm6]	G	A	3.312e^-4	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	17880964	2R_17880964_SNP [dm3] 2R_21993459_SNP [dm6]	C	A	3.314e^-4	0.71	INTRON CG34370
2R	17880965	2R_17880965_SNP [dm3] 2R_21993460_SNP [dm6]	C	T	3.314e^-4	0.71	INTRON CG34370
2L	8810519	2L_8810519_SNP [dm3] 2L_8810519_SNP [dm6]	A	C	3.322e^-4	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	11303667	3R_11303667_SNP [dm3] 3R_15477945_SNP [dm6]	A	T	3.324e^-4	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	26678424	3R_26678424_SNP [dm3] 3R_30852702_SNP [dm6]	T	G	3.327e^-4	0.71	INTRON tll	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	10708570	3L_10708570_SNP [dm3] 3L_10715470_SNP [dm6]	T	G	3.330e^-4	0.71	INTERGENIC
X	11164867	X_11164867_SNP [dm3] X_11270834_SNP [dm6]	C	T	3.346e^-4	0.71	INTRON CG44422
3R	11134127	3R_11134127_SNP [dm3] 3R_15308405_SNP [dm6]	G	T	3.354e^-4	0.71	UTR_3_PRIME Tm1 DOWNSTREAM Tm1
2R	12277787	2R_12277787_INS [dm3] 2R_16390282_INS [dm6]	A	AAACA	3.358e^-4	0.71	INTRON Sema-2b
3R	18835879	3R_18835879_SNP [dm3] 3R_23010157_SNP [dm6]	G	A	3.364e^-4	0.71	UPSTREAM CG34375 INTRON CG34375	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14011102	X_14011102_SNP [dm3] X_14117069_SNP [dm6]	C	G	3.372e^-4	0.71	DOWNSTREAM tRNA:S7:12Eg & 1 other INTERGENIC
2L	18927591	2L_18927591_SNP [dm3] 2L_18927591_SNP [dm6]	A	C	3.379e^-4	0.71	INTRON ssp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	26095935	3R_26095935_INS [dm3] 3R_30270213_INS [dm6]	T	TATT	3.384e^-4	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8398294	2L_8398294_SNP [dm3] 2L_8398294_SNP [dm6]	T	A	3.385e^-4	0.71	UPSTREAM CG13386 DOWNSTREAM CG13385 INTERGENIC
2L	886904	2L_886904_SNP [dm3] 2L_886904_SNP [dm6]	C	G	3.404e^-4	0.71	INTERGENIC
3R	26659702	3R_26659702_SNP [dm3] 3R_30833980_SNP [dm6]	C	T	3.408e^-4	0.71	INTRON CG15544
X	5362453	X_5362453_SNP [dm3] X_5468420_SNP [dm6]	C	G	3.411e^-4	0.71	INTRON SPR
X	17945957	X_17945957_SNP [dm3] X_18051924_SNP [dm6]	T	A	3.423e^-4	0.71	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2673319	2L_2673319_SNP [dm3] 2L_2673319_SNP [dm6]	C	T	3.423e^-4	0.71	INTERGENIC
3R	15578887	3R_15578887_SNP [dm3] 3R_19753165_SNP [dm6]	A	G	3.433e^-4	0.71	INTRON GluClalpha
2L	10331977	2L_10331977_SNP [dm3] 2L_10331977_SNP [dm6]	T	G	3.435e^-4	0.71	UPSTREAM CG5375 INTRON CG5037	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	3743847	3L_3743847_INS [dm3] 3L_3743847_INS [dm6]	T	TT	3.453e^-4	0.71	INTRON CG32264
X	2876229	X_2876229_SNP [dm3] X_2982196_SNP [dm6]	A	G	3.458e^-4	0.71	INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5565782	2L_5565782_SNP [dm3] 2L_5565782_SNP [dm6]	A	C	3.459e^-4	0.71	UPSTREAM CR44794 DOWNSTREAM snRNA:U4:25F INTERGENIC	TF binding site mE1_TFBS_cad
2R	13857327	2R_13857327_SNP [dm3] 2R_17969822_SNP [dm6]	T	C	3.465e^-4	0.71	INTERGENIC
3L	2100830	3L_2100830_SNP [dm3] 3L_2100830_SNP [dm6]	G	T	3.476e^-4	0.71	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	2701078	2R_2701078_SNP [dm3] 2R_6813573_SNP [dm6]	T	G	3.479e^-4	0.71	NON_SYNONYMOUS_CODING koi	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12250734	2L_12250734_SNP [dm3] 2L_12250734_SNP [dm6]	C	T	3.487e^-4	0.71	INTRON aret
2L	18260226	2L_18260226_SNP [dm3] 2L_18260226_SNP [dm6]	T	G	3.492e^-4	0.71	DOWNSTREAM CR44901 INTRON CG42750	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	10680449	2L_10680449_SNP [dm3] 2L_10680449_SNP [dm6]	T	G	3.497e^-4	0.71	UPSTREAM CG17105 DOWNSTREAM CG17104 EXON CR44180
2L	12966988	2L_12966988_SNP [dm3] 2L_12966988_SNP [dm6]	A	T	3.509e^-4	0.71	INTRON CG16800
2L	9085815	2L_9085815_SNP [dm3] 2L_9085815_SNP [dm6]	T	C	3.519e^-4	0.71	INTRON Toll-4
3L	2120268	3L_2120268_SNP [dm3] 3L_2120268_SNP [dm6]	T	C	3.525e^-4	0.71	INTRON zormin
3R	25801160	3R_25801160_SNP [dm3] 3R_29975438_SNP [dm6]	A	T	3.526e^-4	0.71	INTERGENIC
2R	10330734	2R_10330734_SNP [dm3] 2R_14443229_SNP [dm6]	T	A	3.529e^-4	0.71	INTRON Oaz
2L	13915055	2L_13915055_SNP [dm3] 2L_13915055_SNP [dm6]	G	A	3.534e^-4	0.71	SYNONYMOUS_CODING Ance-3
2L	13915278	2L_13915278_SNP [dm3] 2L_13915278_SNP [dm6]	A	C	3.534e^-4	0.71	INTRON Ance-3	TF binding site BDTNP1_TFBS_twi
2L	13915373	2L_13915373_SNP [dm3] 2L_13915373_SNP [dm6]	A	G	3.534e^-4	0.71	INTRON Ance-3	TF binding site BDTNP1_TFBS_twi
2L	17408982	2L_17408982_SNP [dm3] 2L_17408982_SNP [dm6]	A	C	3.539e^-4	0.71	SYNONYMOUS_CODING CLIP-190 DOWNSTREAM Rpb11
2R	780011	2R_780011_SNP [dm3] 2R_4892506_SNP [dm6]	T	G	3.540e^-4	0.71	INTERGENIC	transposable element FlyBase
3L	7177551	3L_7177551_SNP [dm3] 3L_7184451_SNP [dm6]	G	A	3.552e^-4	0.71	INTRON Dscam2
2L	10332556	2L_10332556_SNP [dm3] 2L_10332556_SNP [dm6]	T	C	3.553e^-4	0.71	SYNONYMOUS_CODING CG5037	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17526011	2R_17526011_SNP [dm3] 2R_21638506_SNP [dm6]	A	G	3.554e^-4	0.71	DOWNSTREAM CG10321 INTERGENIC
2L	15308347	2L_15308347_SNP [dm3] 2L_15308347_SNP [dm6]	A	G	3.558e^-4	0.71	INTERGENIC
2R	8563781	2R_8563781_SNP [dm3] 2R_12676276_SNP [dm6]	G	T	3.561e^-4	0.71	UPSTREAM CG42708 INTRON CG42708	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	7891914	3R_7891914_SNP [dm3] 3R_12066192_SNP [dm6]	G	A	3.561e^-4	0.71	INTERGENIC
2L	13605610	2L_13605610_SNP [dm3] 2L_13605610_SNP [dm6]	G	C	3.563e^-4	0.71	INTRON kuz
3L	10708456	3L_10708456_SNP [dm3] 3L_10715356_SNP [dm6]	T	A	3.573e^-4	0.71	INTERGENIC
3L	10708462	3L_10708462_SNP [dm3] 3L_10715362_SNP [dm6]	T	G	3.573e^-4	0.71	INTERGENIC
3L	10708463	3L_10708463_SNP [dm3] 3L_10715363_SNP [dm6]	G	T	3.573e^-4	0.71	INTERGENIC
3L	10708477	3L_10708477_SNP [dm3] 3L_10715377_SNP [dm6]	A	T	3.573e^-4	0.71	INTERGENIC
3L	10708494	3L_10708494_SNP [dm3] 3L_10715394_SNP [dm6]	A	C	3.573e^-4	0.71	INTERGENIC
3L	10708495	3L_10708495_SNP [dm3] 3L_10715395_SNP [dm6]	C	G	3.573e^-4	0.71	INTERGENIC
3L	10708499	3L_10708499_SNP [dm3] 3L_10715399_SNP [dm6]	C	A	3.573e^-4	0.71	INTERGENIC
3L	10708501	3L_10708501_SNP [dm3] 3L_10715401_SNP [dm6]	A	G	3.573e^-4	0.71	INTERGENIC
3L	10708509	3L_10708509_SNP [dm3] 3L_10715409_SNP [dm6]	T	A	3.573e^-4	0.71	INTERGENIC
3L	10708516	3L_10708516_SNP [dm3] 3L_10715416_SNP [dm6]	T	G	3.573e^-4	0.71	INTERGENIC
3L	10708523	3L_10708523_DEL [dm3] 3L_10715423_DEL [dm6]	ATTGCATG	A	3.573e^-4	0.71	INTERGENIC
3L	10708532	3L_10708532_SNP [dm3] 3L_10715432_SNP [dm6]	T	A	3.573e^-4	0.71	INTERGENIC
3L	10708534	3L_10708534_SNP [dm3] 3L_10715434_SNP [dm6]	T	G	3.573e^-4	0.71	INTERGENIC
3L	10708537	3L_10708537_SNP [dm3] 3L_10715437_SNP [dm6]	A	T	3.573e^-4	0.71	INTERGENIC
3L	10708554	3L_10708554_SNP [dm3] 3L_10715454_SNP [dm6]	T	A	3.573e^-4	0.71	INTERGENIC
3L	10708555	3L_10708555_SNP [dm3] 3L_10715455_SNP [dm6]	T	A	3.573e^-4	0.71	INTERGENIC
3L	10708558	3L_10708558_SNP [dm3] 3L_10715458_SNP [dm6]	T	C	3.573e^-4	0.71	INTERGENIC
3L	10708575	3L_10708575_SNP [dm3] 3L_10715475_SNP [dm6]	T	C	3.573e^-4	0.71	INTERGENIC
3L	10708583	3L_10708583_SNP [dm3] 3L_10715483_SNP [dm6]	T	C	3.573e^-4	0.71	INTERGENIC
3L	10708587	3L_10708587_SNP [dm3] 3L_10715487_SNP [dm6]	T	A	3.573e^-4	0.71	INTERGENIC
3L	10708590	3L_10708590_MNP [dm3] 3L_10715490_MNP [dm6]	TTT	AGC	3.573e^-4	0.71	INTERGENIC
3L	10708597	3L_10708597_SNP [dm3] 3L_10715497_SNP [dm6]	T	A	3.573e^-4	0.71	INTERGENIC
3L	10708600	3L_10708600_INS [dm3] 3L_10715500_INS [dm6]	A	AT	3.573e^-4	0.71	INTERGENIC
3L	10708605	3L_10708605_SNP [dm3] 3L_10715505_SNP [dm6]	A	G	3.573e^-4	0.71	INTERGENIC
3L	10708607	3L_10708607_MNP [dm3] 3L_10715507_MNP [dm6]	GCC	TAA	3.573e^-4	0.71	INTERGENIC
3L	10708611	3L_10708611_SNP [dm3] 3L_10715511_SNP [dm6]	T	A	3.573e^-4	0.71	INTERGENIC
3L	10708616	3L_10708616_SNP [dm3] 3L_10715516_SNP [dm6]	G	A	3.573e^-4	0.71	INTERGENIC
3L	10708617	3L_10708617_SNP [dm3] 3L_10715517_SNP [dm6]	A	G	3.573e^-4	0.71	INTERGENIC
3L	10708627	3L_10708627_SNP [dm3] 3L_10715527_SNP [dm6]	T	A	3.573e^-4	0.71	INTERGENIC
3L	10708628	3L_10708628_SNP [dm3] 3L_10715528_SNP [dm6]	T	A	3.573e^-4	0.71	INTERGENIC
3L	10708629	3L_10708629_INS [dm3] 3L_10715529_INS [dm6]	T	TGAAACA	3.573e^-4	0.71	INTERGENIC
3L	10708631	3L_10708631_SNP [dm3] 3L_10715531_SNP [dm6]	T	A	3.573e^-4	0.71	INTERGENIC
3L	10708638	3L_10708638_SNP [dm3] 3L_10715538_SNP [dm6]	T	A	3.573e^-4	0.71	INTERGENIC
3L	10708639	3L_10708639_SNP [dm3] 3L_10715539_SNP [dm6]	T	A	3.573e^-4	0.71	INTERGENIC
3L	10708642	3L_10708642_SNP [dm3] 3L_10715542_SNP [dm6]	C	A	3.573e^-4	0.71	INTERGENIC
3L	10708644	3L_10708644_DEL [dm3] 3L_10715544_DEL [dm6]	GT	A	3.573e^-4	0.71	INTERGENIC
3L	10708650	3L_10708650_SNP [dm3] 3L_10715550_SNP [dm6]	T	C	3.573e^-4	0.71	INTERGENIC
3L	10708655	3L_10708655_SNP [dm3] 3L_10715555_SNP [dm6]	A	C	3.573e^-4	0.71	INTERGENIC
3L	10708656	3L_10708656_SNP [dm3] 3L_10715556_SNP [dm6]	A	G	3.573e^-4	0.71	INTERGENIC
3L	10708663	3L_10708663_SNP [dm3] 3L_10715563_SNP [dm6]	T	A	3.573e^-4	0.71	INTERGENIC
3L	10708666	3L_10708666_SNP [dm3] 3L_10715566_SNP [dm6]	T	A	3.573e^-4	0.71	INTERGENIC
3L	10708670	3L_10708670_SNP [dm3] 3L_10715570_SNP [dm6]	T	A	3.573e^-4	0.71	INTERGENIC
3L	10708673	3L_10708673_SNP [dm3] 3L_10715573_SNP [dm6]	A	G	3.573e^-4	0.71	INTERGENIC
3L	10708686	3L_10708686_SNP [dm3] 3L_10715586_SNP [dm6]	T	A	3.573e^-4	0.71	INTERGENIC
3L	10708687	3L_10708687_SNP [dm3] 3L_10715587_SNP [dm6]	T	A	3.573e^-4	0.71	INTERGENIC
3L	10708692	3L_10708692_SNP [dm3] 3L_10715592_SNP [dm6]	C	A	3.573e^-4	0.71	INTERGENIC
3L	10708693	3L_10708693_SNP [dm3] 3L_10715593_SNP [dm6]	T	A	3.573e^-4	0.71	INTERGENIC
3L	10708700	3L_10708700_SNP [dm3] 3L_10715600_SNP [dm6]	G	T	3.573e^-4	0.71	INTERGENIC
3L	10708702	3L_10708702_SNP [dm3] 3L_10715602_SNP [dm6]	A	C	3.573e^-4	0.71	INTERGENIC
3L	10708705	3L_10708705_SNP [dm3] 3L_10715605_SNP [dm6]	G	A	3.573e^-4	0.71	INTERGENIC
X	17578810	X_17578810_SNP [dm3] X_17684777_SNP [dm6]	C	T	3.583e^-4	0.71	INTRON chas
X	17578817	X_17578817_SNP [dm3] X_17684784_SNP [dm6]	G	T	3.583e^-4	0.71	INTRON chas
X	17578828	X_17578828_SNP [dm3] X_17684795_SNP [dm6]	G	T	3.583e^-4	0.71	INTRON chas
X	17578833	X_17578833_SNP [dm3] X_17684800_SNP [dm6]	T	A	3.583e^-4	0.71	INTRON chas
X	17578840	X_17578840_SNP [dm3] X_17684807_SNP [dm6]	A	G	3.583e^-4	0.71	INTRON chas
X	17578843	X_17578843_SNP [dm3] X_17684810_SNP [dm6]	T	C	3.583e^-4	0.71	INTRON chas
X	17578858	X_17578858_SNP [dm3] X_17684825_SNP [dm6]	C	T	3.583e^-4	0.71	INTRON chas
X	17578859	X_17578859_SNP [dm3] X_17684826_SNP [dm6]	G	A	3.583e^-4	0.71	INTRON chas
X	17578861	X_17578861_SNP [dm3] X_17684828_SNP [dm6]	G	A	3.583e^-4	0.71	INTRON chas
2L	16436405	2L_16436405_SNP [dm3] 2L_16436405_SNP [dm6]	C	G	3.584e^-4	0.71	INTRON CG5888
X	7439373	X_7439373_INS [dm3] X_7545340_INS [dm6]	T	TGTAT	3.591e^-4	0.71	INTRON CG32719
3R	10833377	3R_10833377_SNP [dm3] 3R_15007655_SNP [dm6]	T	G	3.592e^-4	0.71	INTERGENIC
2L	9081277	2L_9081277_SNP [dm3] 2L_9081277_SNP [dm6]	G	A	3.608e^-4	0.71	INTERGENIC
2L	9092320	2L_9092320_SNP [dm3] 2L_9092320_SNP [dm6]	A	T	3.608e^-4	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_sens
3L	10708619	3L_10708619_SNP [dm3] 3L_10715519_SNP [dm6]	A	T	3.617e^-4	0.71	INTERGENIC
3L	10943292	3L_10943292_SNP [dm3] 3L_10950192_SNP [dm6]	A	C	3.635e^-4	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3777423	3L_3777423_SNP [dm3] 3L_3777423_SNP [dm6]	A	C	3.640e^-4	0.71	INTRON CG32264
2L	16074264	2L_16074264_SNP [dm3] 2L_16074264_SNP [dm6]	G	T	3.641e^-4	0.71	UPSTREAM CR44870 INTRON beat-Ia
X	17578802	X_17578802_SNP [dm3] X_17684769_SNP [dm6]	A	C	3.658e^-4	0.71	INTRON chas
3R	25801158	3R_25801158_SNP [dm3] 3R_29975436_SNP [dm6]	G	T	3.659e^-4	0.71	INTERGENIC
3R	9443609	3R_9443609_SNP [dm3] 3R_13617887_SNP [dm6]	C	T	3.667e^-4	0.71	EXON CR45680
2R	12854099	2R_12854099_SNP [dm3] 2R_16966594_SNP [dm6]	G	A	3.674e^-4	0.71	INTERGENIC
2L	6905302	2L_6905302_SNP [dm3] 2L_6905302_SNP [dm6]	C	T	3.674e^-4	0.71	SYNONYMOUS_CODING Nlg2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	13163983	3L_13163983_SNP [dm3] 3L_13170883_SNP [dm6]	G	A	3.675e^-4	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2R	12030353	2R_12030353_SNP [dm3] 2R_16142848_SNP [dm6]	T	A	3.692e^-4	0.71	UTR_3_PRIME CG30094 UPSTREAM Aats-cys DOWNSTREAM Got1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	14507473	3R_14507473_SNP [dm3] 3R_18681751_SNP [dm6]	G	A	3.695e^-4	0.71	INTRON CG7708
3R	14507646	3R_14507646_SNP [dm3] 3R_18681924_SNP [dm6]	A	C	3.701e^-4	0.71	INTRON CG7708
2L	6786230	2L_6786230_SNP [dm3] 2L_6786230_SNP [dm6]	G	A	3.703e^-4	0.71	INTRON nrv1	TF binding site mE1_TFBS_Trl
2R	4091112	2R_4091112_SNP [dm3] 2R_8203607_SNP [dm6]	G	A	3.706e^-4	0.71	INTRON LRP1
3L	7782986	3L_7782986_SNP [dm3] 3L_7789886_SNP [dm6]	C	T	3.735e^-4	0.71	INTRON CG32369
3R	17979647	3R_17979647_SNP [dm3] 3R_22153925_SNP [dm6]	T	C	3.747e^-4	0.71	INTRON SKIP	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
3L	2851380	3L_2851380_SNP [dm3] 3L_2851380_SNP [dm6]	C	T	3.748e^-4	0.71	INTRON CG43444	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	11948673	2R_11948673_SNP [dm3] 2R_16061168_SNP [dm6]	C	A	3.761e^-4	0.71	DOWNSTREAM CG8405 INTERGENIC
2L	4721014	2L_4721014_SNP [dm3] 2L_4721014_SNP [dm6]	C	G	3.767e^-4	0.71	UTR_3_PRIME CG34351
3L	7170418	3L_7170418_SNP [dm3] 3L_7177318_SNP [dm6]	A	T	3.770e^-4	0.71	INTRON Dscam2
2L	4190506	2L_4190506_SNP [dm3] 2L_4190506_SNP [dm6]	A	G	3.777e^-4	0.71	INTRON CG3714	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14781582	3L_14781582_SNP [dm3] 3L_14788482_SNP [dm6]	C	T	3.779e^-4	0.71	NON_SYNONYMOUS_CODING Tdrd3	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	13166492	3R_13166492_SNP [dm3] 3R_17340770_SNP [dm6]	C	A	3.780e^-4	0.71	INTRON beat-IIa
3R	13166674	3R_13166674_SNP [dm3] 3R_17340952_SNP [dm6]	T	G	3.780e^-4	0.71	INTRON beat-IIa
X	17948058	X_17948058_SNP [dm3] X_18054025_SNP [dm6]	T	C	3.780e^-4	0.71	INTRON Sh	TF binding site BDTNP1_TFBS_dl
2L	10331939	2L_10331939_SNP [dm3] 2L_10331939_SNP [dm6]	G	A	3.783e^-4	0.71	UPSTREAM CG5375 INTRON CG5037	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	22277381	2L_22277381_SNP [dm3] 2L_22277381_SNP [dm6]	T	G	3.786e^-4	0.71	INTERGENIC	transposable element FlyBase
X	20504962	X_20504962_SNP [dm3] X_20633935_SNP [dm6]	G	C	3.798e^-4	0.71	INTERGENIC	TF binding site mE1_TFBS_cad
X	15273469	X_15273469_SNP [dm3] X_15379436_SNP [dm6]	G	A	3.800e^-4	0.71	UPSTREAM acj6 DOWNSTREAM CG9164 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9324120	2L_9324120_SNP [dm3] 2L_9324120_SNP [dm6]	A	G	3.813e^-4	0.71	INTERGENIC
X	4132317	X_4132317_SNP [dm3] X_4238284_SNP [dm6]	T	G	3.819e^-4	0.71	INTERGENIC
2R	9703032	2R_9703032_SNP [dm3] 2R_13815527_SNP [dm6]	C	T	3.825e^-4	0.71	INTRON stj
2R	9646757	2R_9646757_SNP [dm3] 2R_13759252_SNP [dm6]	A	C	3.825e^-4	0.71	DOWNSTREAM CG6280 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	7437201	3L_7437201_SNP [dm3] 3L_7444101_SNP [dm6]	C	A	3.830e^-4	0.71	INTRON CG42458
2L	13961201	2L_13961201_SNP [dm3] 2L_13961201_SNP [dm6]	T	C	3.830e^-4	0.71	INTRON NimA	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9282814	3R_9282814_SNP [dm3] 3R_13457092_SNP [dm6]	G	T	3.835e^-4	0.71	SYNONYMOUS_CODING CG14372 INTRON CR17025
3R	22894703	3R_22894703_SNP [dm3] 3R_27068981_SNP [dm6]	A	G	3.836e^-4	0.71	INTRON spz
3L	9736538	3L_9736538_SNP [dm3] 3L_9743438_SNP [dm6]	C	A	3.839e^-4	0.71	INTRON CG42268 & 1 other
3L	9736539	3L_9736539_SNP [dm3] 3L_9743439_SNP [dm6]	G	T	3.839e^-4	0.71	INTRON CG42268 & 1 other
3L	9736541	3L_9736541_SNP [dm3] 3L_9743441_SNP [dm6]	A	T	3.839e^-4	0.71	INTRON CG42268 & 1 other
2L	9091536	2L_9091536_SNP [dm3] 2L_9091536_SNP [dm6]	A	C	3.843e^-4	0.71	INTERGENIC
X	12266790	X_12266790_SNP [dm3] X_12372757_SNP [dm6]	A	C	3.848e^-4	0.71	UPSTREAM CG2577 INTERGENIC
3L	11907388	3L_11907388_SNP [dm3] 3L_11914288_SNP [dm6]	C	A	3.848e^-4	0.71	INTRON CG44837
2L	5562592	2L_5562592_SNP [dm3] 2L_5562592_SNP [dm6]	A	T	3.855e^-4	0.71	SYNONYMOUS_CODING GluRIIB	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12966902	2L_12966902_SNP [dm3] 2L_12966902_SNP [dm6]	C	G	3.863e^-4	0.71	NON_SYNONYMOUS_CODING CG16800 SPLICE_SITE_REGION CG16800
2L	12966981	2L_12966981_SNP [dm3] 2L_12966981_SNP [dm6]	A	T	3.863e^-4	0.71	INTRON CG16800
2L	4371870	2L_4371870_SNP [dm3] 2L_4371870_SNP [dm6]	A	C	3.864e^-4	0.71	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3L	2850061	3L_2850061_SNP [dm3] 3L_2850061_SNP [dm6]	T	C	3.865e^-4	0.71	INTRON CG43444	TF binding site mE1_TFBS_cad
3R	13259677	3R_13259677_SNP [dm3] 3R_17433955_SNP [dm6]	G	A	3.865e^-4	0.71	DOWNSTREAM CG44090 INTRON CG5873
3L	3892266	3L_3892266_SNP [dm3] 3L_3892266_SNP [dm6]	T	C	3.866e^-4	0.71	UPSTREAM Fie & 1 other DOWNSTREAM snRNA:U11 INTERGENIC
3R	19217509	3R_19217509_SNP [dm3] 3R_23391787_SNP [dm6]	C	A	3.867e^-4	0.71	INTERGENIC
2R	14339586	2R_14339586_SNP [dm3] 2R_18452081_SNP [dm6]	A	G	3.874e^-4	0.71	NON_SYNONYMOUS_CODING CG5190 DOWNSTREAM CG17669	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	6704803	3R_6704803_SNP [dm3] 3R_10879081_SNP [dm6]	C	T	3.874e^-4	0.71	NON_SYNONYMOUS_CODING CG14695 DOWNSTREAM Sodh-2 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6711497	3R_6711497_SNP [dm3] 3R_10885775_SNP [dm6]	T	G	3.874e^-4	0.71	UTR_5_PRIME Leash UPSTREAM CG14696	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	6720973	3R_6720973_SNP [dm3] 3R_10895251_SNP [dm6]	C	G	3.874e^-4	0.71	UTR_3_PRIME Leash	TF binding site mE1_TFBS_chinmo
3L	4677106	3L_4677106_SNP [dm3] 3L_4677106_SNP [dm6]	A	G	3.876e^-4	0.71	UPSTREAM CG34266 INTRON axo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7947003	3L_7947003_SNP [dm3] 3L_7953903_SNP [dm6]	T	A	3.878e^-4	0.71	INTERGENIC
X	9465460	X_9465460_SNP [dm3] X_9571427_SNP [dm6]	C	T	3.884e^-4	0.71	UPSTREAM Cubn DOWNSTREAM CG32699 INTERGENIC
2L	6189315	2L_6189315_SNP [dm3] 2L_6189315_SNP [dm6]	G	A	3.885e^-4	0.71	INTRON CG34380	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	18835676	3R_18835676_SNP [dm3] 3R_23009954_SNP [dm6]	G	A	3.886e^-4	0.71	UPSTREAM CG34375 INTRON CG34375	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4489102	3L_4489102_SNP [dm3] 3L_4489102_SNP [dm6]	G	A	3.888e^-4	0.71	INTRON CG13722
2L	3601358	2L_3601358_SNP [dm3] 2L_3601358_SNP [dm6]	T	C	3.892e^-4	0.71	INTERGENIC	TF binding site mE1_TFBS_sens
2L	9091084	2L_9091084_INS [dm3] 2L_9091084_INS [dm6]	T	TTAG	3.899e^-4	0.71	INTERGENIC
X	17942715	X_17942715_SNP [dm3] X_18048682_SNP [dm6]	A	T	3.910e^-4	0.71	UTR_3_PRIME CG15373 INTRON Sh
3R	19299992	3R_19299992_SNP [dm3] 3R_23474270_SNP [dm6]	C	T	3.911e^-4	0.71	INTERGENIC	TF binding site mE1_TFBS_inv
3R	26088449	3R_26088449_SNP [dm3] 3R_30262727_SNP [dm6]	G	C	3.912e^-4	0.71	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	9850831	2R_9850831_SNP [dm3] 2R_13963326_SNP [dm6]	C	T	3.920e^-4	0.71	INTRON Cp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_run
X	17942997	X_17942997_DEL [dm3] X_18048964_DEL [dm6]	CCT	C	3.924e^-4	0.71	DOWNSTREAM CG15373 INTRON Sh
2L	9082643	2L_9082643_SNP [dm3] 2L_9082643_SNP [dm6]	T	C	3.926e^-4	0.71	INTERGENIC
3L	2541360	3L_2541360_INS [dm3] 3L_2541360_INS [dm6]	T	TT	3.932e^-4	0.71	UTR_5_PRIME Spn
2R	1640811	2R_1640811_INS [dm3] 2R_5753306_INS [dm6]	G	GCTTACAG	3.934e^-4	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	9200940	3L_9200940_SNP [dm3] 3L_9207840_SNP [dm6]	C	T	3.934e^-4	0.71	UTR_5_PRIME Slc45-1 INTRON Slc45-1
X	9763292	X_9763292_SNP [dm3] X_9869259_SNP [dm6]	G	A	3.937e^-4	0.71	UPSTREAM CG45060 INTERGENIC
X	9763299	X_9763299_SNP [dm3] X_9869266_SNP [dm6]	T	A	3.937e^-4	0.71	UPSTREAM CG45060 INTERGENIC
X	9763312	X_9763312_SNP [dm3] X_9869279_SNP [dm6]	T	C	3.937e^-4	0.71	UPSTREAM CG45060 INTERGENIC
X	9763318	X_9763318_SNP [dm3] X_9869285_SNP [dm6]	G	T	3.937e^-4	0.71	UPSTREAM CG45060 INTERGENIC
X	9763327	X_9763327_SNP [dm3] X_9869294_SNP [dm6]	G	T	3.937e^-4	0.71	UPSTREAM CG45060 INTERGENIC
3L	7178409	3L_7178409_SNP [dm3] 3L_7185309_SNP [dm6]	A	C	3.946e^-4	0.71	INTRON Dscam2
2L	14276685	2L_14276685_DEL [dm3] 2L_14276685_DEL [dm6]	TTAT	T	3.960e^-4	0.71	UPSTREAM CG32971 INTRON wb & 1 other
2R	2095862	2R_2095862_SNP [dm3] 2R_6208357_SNP [dm6]	T	C	3.960e^-4	0.71	INTRON CG17994	TF binding site mE1_TFBS_cad
X	5122089	X_5122089_SNP [dm3] X_5228056_SNP [dm6]	C	A	3.960e^-4	0.71	INTRON CG15465 & 1 other
2L	13930764	2L_13930764_SNP [dm3] 2L_13930764_SNP [dm6]	A	T	3.961e^-4	0.71	NON_SYNONYMOUS_CODING CG42711 INTRON Ance-3
2R	10794824	2R_10794824_SNP [dm3] 2R_14907319_SNP [dm6]	A	T	3.975e^-4	0.71	UTR_5_PRIME CG10249 INTRON CG10249
2L	8764348	2L_8764348_SNP [dm3] 2L_8764348_SNP [dm6]	A	G	3.976e^-4	0.71	DOWNSTREAM CG9463 INTERGENIC
3L	18145511	3L_18145511_SNP [dm3] 3L_18152411_SNP [dm6]	C	A	3.979e^-4	0.71	INTRON CG7330
2R	17737612	2R_17737612_SNP [dm3] 2R_21850107_SNP [dm6]	C	G	3.983e^-4	0.71	INTERGENIC
X	4879291	X_4879291_SNP [dm3] X_4985258_SNP [dm6]	T	G	3.990e^-4	0.71	INTRON CR44833	regulatory region REDfly_CRMs
2R	18643377	2R_18643377_SNP [dm3] 2R_22755872_SNP [dm6]	T	C	3.994e^-4	0.71	UTR_3_PRIME CG13526 UPSTREAM CR30267 INTRON CG42260	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	18643452	2R_18643452_SNP [dm3] 2R_22755947_SNP [dm6]	A	G	3.994e^-4	0.71	UPSTREAM CR30267 DOWNSTREAM CG13526 INTRON CG42260	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	20396944	X_20396944_SNP [dm3] X_20525917_SNP [dm6]	G	A	4.000e^-4	0.71	UPSTREAM Tak1 INTERGENIC	TF binding site mE1_TFBS_zfh1 transposable element FlyBase
X	20396960	X_20396960_INS [dm3] X_20525933_INS [dm6]	AA	GTTGTT	4.000e^-4	0.71	INTERGENIC	transposable element FlyBase
3L	3595320	3L_3595320_SNP [dm3] 3L_3595320_SNP [dm6]	G	C	4.000e^-4	0.71	INTRON Eip63E
3R	9554688	3R_9554688_SNP [dm3] 3R_13728966_SNP [dm6]	G	C	4.006e^-4	0.71	INTRON CG34383
2L	8584512	2L_8584512_SNP [dm3] 2L_8584512_SNP [dm6]	G	T	4.014e^-4	0.71	INTRON Sema-1a
X	13494429	X_13494429_SNP [dm3] X_13600396_SNP [dm6]	A	T	4.016e^-4	0.71	UPSTREAM up INTRON up
3R	9554691	3R_9554691_SNP [dm3] 3R_13728969_SNP [dm6]	A	G	4.026e^-4	0.71	INTRON CG34383
3R	9554692	3R_9554692_SNP [dm3] 3R_13728970_SNP [dm6]	A	G	4.026e^-4	0.71	INTRON CG34383
2L	13214996	2L_13214996_SNP [dm3] 2L_13214996_SNP [dm6]	T	C	4.028e^-4	0.71	START_GAINED kek4 UTR_5_PRIME kek4 UPSTREAM snRNA:U2:34ABb INTRON kek4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
X	17578863	X_17578863_SNP [dm3] X_17684830_SNP [dm6]	A	T	4.029e^-4	0.71	INTRON chas
3L	22592431	3L_22592431_DEL [dm3] 3L_22599331_DEL [dm6]	CCGGTC	C	4.033e^-4	0.71	INTRON CG14459	TF binding site mE1_TFBS_cad
2R	18750160	2R_18750160_SNP [dm3] 2R_22862637_SNP [dm6]	T	G	4.035e^-4	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	15907977	3L_15907977_SNP [dm3] 3L_15914877_SNP [dm6]	G	A	4.039e^-4	0.71	INTRON sff
3L	4631357	3L_4631357_SNP [dm3] 3L_4631357_SNP [dm6]	T	A	4.042e^-4	0.71	INTRON axo
3R	14809728	3R_14809728_SNP [dm3] 3R_18984006_SNP [dm6]	G	T	4.056e^-4	0.71	UPSTREAM gukh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
2R	12339888	2R_12339888_SNP [dm3] 2R_16452383_SNP [dm6]	T	C	4.058e^-4	0.71	INTERGENIC
3L	13841408	3L_13841408_SNP [dm3] 3L_13848308_SNP [dm6]	G	T	4.062e^-4	0.71	INTRON Hml
3L	13841432	3L_13841432_SNP [dm3] 3L_13848332_SNP [dm6]	G	C	4.062e^-4	0.71	INTRON Hml
3L	13968674	3L_13968674_SNP [dm3] 3L_13975574_SNP [dm6]	C	A	4.063e^-4	0.71	INTRON Hsc70-1
3L	13968705	3L_13968705_SNP [dm3] 3L_13975605_SNP [dm6]	T	A	4.063e^-4	0.71	INTRON Hsc70-1
2R	2094624	2R_2094624_DEL [dm3] 2R_6207119_DEL [dm6]	GG	G	4.065e^-4	0.71	DOWNSTREAM CG17994 INTERGENIC
2R	2094629	2R_2094629_SNP [dm3] 2R_6207124_SNP [dm6]	T	A	4.065e^-4	0.71	DOWNSTREAM CG17994 INTERGENIC
2R	2094632	2R_2094632_SNP [dm3] 2R_6207127_SNP [dm6]	T	C	4.065e^-4	0.71	DOWNSTREAM CG17994 INTERGENIC
3L	4036574	3L_4036574_DEL [dm3] 3L_4036574_DEL [dm6]	CC	C	4.077e^-4	0.71	DOWNSTREAM Gr64d & 2 others INTRON Gr64f
3L	7287994	3L_7287994_INS [dm3] 3L_7294894_INS [dm6]	G	GTTGGCATG	4.079e^-4	0.71	UTR_5_PRIME unc-13-4A
3L	635197	3L_635197_SNP [dm3] 3L_635197_SNP [dm6]	T	C	4.087e^-4	0.71	EXON CR43334	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3877451	3L_3877451_SNP [dm3] 3L_3877451_SNP [dm6]	T	A	4.089e^-4	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA
X	16044743	X_16044743_DEL [dm3] X_16150710_DEL [dm6]	TCTCTCTCT	T	4.090e^-4	0.71	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	6917977	2R_6917977_SNP [dm3] 2R_11030472_SNP [dm6]	C	T	4.091e^-4	0.71	INTRON luna
2R	7561111	2R_7561111_SNP [dm3] 2R_11673606_SNP [dm6]	T	C	4.100e^-4	0.71	SYNONYMOUS_CODING Tret1-1 INTRON Roc2	TF binding site BDTNP1_TFBS_da
3L	10708459	3L_10708459_SNP [dm3] 3L_10715359_SNP [dm6]	G	T	4.102e^-4	0.71	INTERGENIC
3L	10708506	3L_10708506_SNP [dm3] 3L_10715406_SNP [dm6]	A	G	4.102e^-4	0.71	INTERGENIC
3L	10708542	3L_10708542_SNP [dm3] 3L_10715442_SNP [dm6]	C	A	4.102e^-4	0.71	INTERGENIC
3L	10708588	3L_10708588_SNP [dm3] 3L_10715488_SNP [dm6]	T	G	4.102e^-4	0.71	INTERGENIC
3L	10708599	3L_10708599_SNP [dm3] 3L_10715499_SNP [dm6]	A	C	4.102e^-4	0.71	INTERGENIC
2L	22485527	2L_22485527_SNP [dm3] 2L_22592795_SNP [dm6]	T	C	4.105e^-4	0.71	INTERGENIC
2L	22485549	2L_22485549_SNP [dm3] 2L_22592817_SNP [dm6]	C	G	4.105e^-4	0.71	INTERGENIC
2L	22485586	2L_22485586_SNP [dm3] 2L_22592854_SNP [dm6]	G	A	4.105e^-4	0.71	INTERGENIC
2R	13857338	2R_13857338_SNP [dm3] 2R_17969833_SNP [dm6]	T	G	4.108e^-4	0.71	INTERGENIC
3L	3748325	3L_3748325_SNP [dm3] 3L_3748325_SNP [dm6]	G	T	4.117e^-4	0.71	INTRON CG32264
2R	12416604	2R_12416604_SNP [dm3] 2R_16529099_SNP [dm6]	A	T	4.127e^-4	0.71	INTRON Sema-2a
2L	15793848	2L_15793848_SNP [dm3] 2L_15793848_SNP [dm6]	A	G	4.137e^-4	0.71	INTERGENIC
3L	18849394	3L_18849394_INS [dm3] 3L_18856294_INS [dm6]	T	TT	4.142e^-4	0.71	UPSTREAM CR45388 INTERGENIC
3L	18849400	3L_18849400_SNP [dm3] 3L_18856300_SNP [dm6]	C	T	4.142e^-4	0.71	UPSTREAM CR45388 INTERGENIC
2L	22521078	2L_22521078_SNP [dm3] 2L_22628346_SNP [dm6]	G	T	4.146e^-4	0.71	INTRON CG40006
3R	24576857	3R_24576857_SNP [dm3] 3R_28751135_SNP [dm6]	C	A	4.150e^-4	0.71	NON_SYNONYMOUS_CODING CG10000
2L	4340935	2L_4340935_SNP [dm3] 2L_4340935_SNP [dm6]	C	T	4.150e^-4	0.71	INTRON Atet
3R	22768912	3R_22768912_SNP [dm3] 3R_26943190_SNP [dm6]	C	A	4.152e^-4	0.71	NON_SYNONYMOUS_CODING sda	TF binding site mE1_TFBS_cad
2R	11423088	2R_11423088_SNP [dm3] 2R_15535583_SNP [dm6]	A	G	4.157e^-4	0.71	SPLICE_SITE_REGION CG30471 INTRON CG30471	TF binding site BDTNP1_TFBS_sna
2R	18647170	2R_18647170_SNP [dm3] 2R_22759665_SNP [dm6]	G	T	4.161e^-4	0.71	DOWNSTREAM CR30267 INTRON CG42260
X	17856587	X_17856587_SNP [dm3] X_17962554_SNP [dm6]	G	A	4.165e^-4	0.71	INTRON Sh
X	20039798	X_20039798_SNP [dm3] X_20145765_SNP [dm6]	T	G	4.174e^-4	0.71	INTERGENIC
2L	16361283	2L_16361283_SNP [dm3] 2L_16361283_SNP [dm6]	A	C	4.176e^-4	0.71	INTERGENIC
X	7771866	X_7771866_SNP [dm3] X_7877833_SNP [dm6]	T	C	4.179e^-4	0.71	SYNONYMOUS_CODING Ir7d DOWNSTREAM Ir7c
2L	15889836	2L_15889836_SNP [dm3] 2L_15889836_SNP [dm6]	A	G	4.184e^-4	0.71	INTRON Tep1	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3L	2120271	3L_2120271_SNP [dm3] 3L_2120271_SNP [dm6]	C	T	4.191e^-4	0.71	INTRON zormin
3L	2120275	3L_2120275_SNP [dm3] 3L_2120275_SNP [dm6]	G	A	4.191e^-4	0.71	INTRON zormin
2R	11813228	2R_11813228_SNP [dm3] 2R_15925723_SNP [dm6]	T	C	4.192e^-4	0.71	SYNONYMOUS_CODING bdg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13271563	2L_13271563_SNP [dm3] 2L_13271563_SNP [dm6]	C	T	4.197e^-4	0.71	SYNONYMOUS_CODING CG44085	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7286126	3L_7286126_SNP [dm3] 3L_7293026_SNP [dm6]	A	G	4.201e^-4	0.71	INTRON unc-13-4A
3R	18835144	3R_18835144_DEL [dm3] 3R_23009422_DEL [dm6]	AA	A	4.203e^-4	0.71	INTRON CG34375
3L	9426785	3L_9426785_INS [dm3] 3L_9433685_INS [dm6]	T	TT	4.212e^-4	0.71	UTR_3_PRIME CG42526 INTRON MTF-1
3R	23539099	3R_23539099_SNP [dm3] 3R_27713377_SNP [dm6]	C	T	4.213e^-4	0.71	INTERGENIC
2L	7333256	2L_7333256_SNP [dm3] 2L_7333256_SNP [dm6]	T	A	4.216e^-4	0.71	UPSTREAM Wnt6 INTERGENIC
2R	8967063	2R_8967063_SNP [dm3] 2R_13079558_SNP [dm6]	A	T	4.218e^-4	0.71	UPSTREAM Drl-2 INTERGENIC
2L	3730373	2L_3730373_SNP [dm3] 2L_3730373_SNP [dm6]	G	T	4.223e^-4	0.71	UPSTREAM CG10019 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	21782210	3R_21782210_SNP [dm3] 3R_25956488_SNP [dm6]	C	T	4.245e^-4	0.71	UPSTREAM CCAP-R INTERGENIC
2L	4333720	2L_4333720_SNP [dm3] 2L_4333720_SNP [dm6]	G	A	4.248e^-4	0.71	UPSTREAM Atet INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1

Missing results

By genomic position
Variant impact
Gene name

CN_Hobo_TEMP_W phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results