DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.957e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2461 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	6105874	2L_6105874_SNP [dm3] 2L_6105874_SNP [dm6]	T	C	6.312e^-7	0.512	INTRON stai
X	18851129	X_18851129_INS [dm3] X_18957096_INS [dm6]	A	ACAAATATTG	7.679e^-7	0.512	INTRON CG43759
2L	1561541	2L_1561541_SNP [dm3] 2L_1561541_SNP [dm6]	T	A	9.826e^-7	0.512	INTRON haf
3L	16037490	3L_16037490_SNP [dm3] 3L_16044390_SNP [dm6]	T	C	1.128e^-6	0.512	INTRON th	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
2L	8583625	2L_8583625_SNP [dm3] 2L_8583625_SNP [dm6]	C	T	1.766e^-6	0.642	INTRON Sema-1a
3R	19211784	3R_19211784_SNP [dm3] 3R_23386062_SNP [dm6]	T	C	2.299e^-6	0.658	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	12379912	2R_12379912_SNP [dm3] 2R_16492407_SNP [dm6]	T	C	2.535e^-6	0.658	SYNONYMOUS_CODING S-Lap8	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	563223	2L_563223_SNP [dm3] 2L_563223_SNP [dm6]	T	C	3.047e^-6	0.665	START_GAINED CG11835 UTR_5_PRIME CG11835 UPSTREAM CG2794 INTRON CG11835	TF binding site mE1_TFBS_chinmo
X	20396880	X_20396880_SNP [dm3] X_20525853_SNP [dm6]	G	A	3.704e^-6	0.665	UPSTREAM Tak1 INTERGENIC	TF binding site mE1_TFBS_zfh1
2L	2866098	2L_2866098_SNP [dm3] 2L_2866098_SNP [dm6]	A	G	6.239e^-6	0.665	INTRON CG2991
3L	2105093	3L_2105093_SNP [dm3] 3L_2105093_SNP [dm6]	G	C	7.581e^-6	0.665	INTRON sls	TF binding site mE1_TFBS_chinmo
2L	2797921	2L_2797921_SNP [dm3] 2L_2797921_SNP [dm6]	T	G	9.112e^-6	0.665	INTRON Syt1 EXON CR43821	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	4261013	2L_4261013_SNP [dm3] 2L_4261013_SNP [dm6]	T	C	9.261e^-6	0.665	INTRON CR44080
2L	6106168	2L_6106168_INS [dm3] 2L_6106168_INS [dm6]	G	CT	9.332e^-6	0.665	INTRON stai
2L	6106172	2L_6106172_INS [dm3] 2L_6106172_INS [dm6]	T	TAAGCTA	9.332e^-6	0.665	INTRON stai
2L	22931363	2L_22931363_SNP [dm3] 2L_23038631_SNP [dm6]	T	G	9.999e^-6	0.665	INTERGENIC
2R	2348113	2R_2348113_SNP [dm3] 2R_6460608_SNP [dm6]	C	A	1.005e^-5	0.665	INTERGENIC
2R	17877171	2R_17877171_SNP [dm3] 2R_21989666_SNP [dm6]	C	T	1.027e^-5	0.665	SYNONYMOUS_CODING CG34370	TF binding site mE1_TFBS_cad
3L	16037555	3L_16037555_SNP [dm3] 3L_16044455_SNP [dm6]	A	G	1.065e^-5	0.665	INTRON th	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
2R	18444112	2R_18444112_SNP [dm3] 2R_22556607_SNP [dm6]	T	C	1.096e^-5	0.665	SYNONYMOUS_CODING px	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12705144	3L_12705144_INS [dm3] 3L_12712044_INS [dm6]	T	TGAAATATA	1.147e^-5	0.665	INTERGENIC	TF binding site mE1_TFBS_D
3L	12705165	3L_12705165_DEL [dm3] 3L_12712065_DEL [dm6]	AG	A	1.147e^-5	0.665	INTERGENIC	TF binding site mE1_TFBS_D
3L	12705307	3L_12705307_SNP [dm3] 3L_12712207_SNP [dm6]	T	G	1.147e^-5	0.665	INTERGENIC
3L	12705308	3L_12705308_SNP [dm3] 3L_12712208_SNP [dm6]	T	A	1.147e^-5	0.665	INTERGENIC
3L	12705369	3L_12705369_SNP [dm3] 3L_12712269_SNP [dm6]	G	C	1.149e^-5	0.665	INTERGENIC
3L	3499847	3L_3499847_SNP [dm3] 3L_3499847_SNP [dm6]	G	T	1.189e^-5	0.665	INTRON CG42324
3L	13656806	3L_13656806_SNP [dm3] 3L_13663706_SNP [dm6]	T	C	1.204e^-5	0.665	INTRON bru-3
2R	1922669	2R_1922669_SNP [dm3] 2R_6035164_SNP [dm6]	T	C	1.255e^-5	0.665	INTRON SCAP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16071254	X_16071254_SNP [dm3] X_16177221_SNP [dm6]	A	C	1.284e^-5	0.665	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	2397947	2R_2397947_SNP [dm3] 2R_6510442_SNP [dm6]	G	T	1.296e^-5	0.665	UPSTREAM CR45127 INTRON jing	TF binding site BDTNP1_TFBS_dl
3R	19250659	3R_19250659_SNP [dm3] 3R_23424937_SNP [dm6]	C	T	1.368e^-5	0.665	DOWNSTREAM CG43694 INTRON CG4374
2L	554505	2L_554505_SNP [dm3] 2L_554505_SNP [dm6]	T	C	1.477e^-5	0.665	SYNONYMOUS_CODING rempA
X	16510329	X_16510329_SNP [dm3] X_16616296_SNP [dm6]	A	G	1.507e^-5	0.665	SYNONYMOUS_CODING CG9782	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	2105215	3L_2105215_SNP [dm3] 3L_2105215_SNP [dm6]	T	C	1.538e^-5	0.665	SYNONYMOUS_CODING sls	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	1922700	2R_1922700_SNP [dm3] 2R_6035195_SNP [dm6]	T	C	1.555e^-5	0.665	INTRON SCAP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12705141	3L_12705141_INS [dm3] 3L_12712041_INS [dm6]	T	TA	1.563e^-5	0.665	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3L	12705146	3L_12705146_SNP [dm3] 3L_12712046_SNP [dm6]	G	A	1.563e^-5	0.665	INTERGENIC	TF binding site mE1_TFBS_D
2L	22446523	2L_22446523_DEL [dm3] 2L_22553791_DEL [dm6]	ATAGCCTGG	A	1.572e^-5	0.665	UTR_3_PRIME CG17493	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	15274440	2L_15274440_SNP [dm3] 2L_15274440_SNP [dm6]	A	T	1.604e^-5	0.665	INTRON UK114	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15208408	2R_15208408_SNP [dm3] 2R_19320903_SNP [dm6]	G	A	1.672e^-5	0.665	INTRON Rgk1
3L	12705303	3L_12705303_INS [dm3] 3L_12712203_INS [dm6]	C	CCTT	1.768e^-5	0.665	INTERGENIC
2R	15074883	2R_15074883_SNP [dm3] 2R_19187378_SNP [dm6]	A	G	1.959e^-5	0.665	INTRON hppy
2L	9079208	2L_9079208_SNP [dm3] 2L_9079208_SNP [dm6]	T	A	2.080e^-5	0.665	INTERGENIC
2L	9079278	2L_9079278_SNP [dm3] 2L_9079278_SNP [dm6]	A	T	2.080e^-5	0.665	INTERGENIC
2L	827721	2L_827721_SNP [dm3] 2L_827721_SNP [dm6]	G	A	2.151e^-5	0.665	INTRON dock	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	554520	2L_554520_SNP [dm3] 2L_554520_SNP [dm6]	A	G	2.226e^-5	0.665	SYNONYMOUS_CODING rempA
X	20396870	X_20396870_SNP [dm3] X_20525843_SNP [dm6]	G	A	2.233e^-5	0.665	UPSTREAM Tak1 INTERGENIC	TF binding site mE1_TFBS_zfh1
X	20396871	X_20396871_SNP [dm3] X_20525844_SNP [dm6]	G	A	2.233e^-5	0.665	UPSTREAM Tak1 INTERGENIC	TF binding site mE1_TFBS_zfh1
3R	9476474	3R_9476474_SNP [dm3] 3R_13650752_SNP [dm6]	A	C	2.305e^-5	0.665	INTRON rin
3R	9476494	3R_9476494_SNP [dm3] 3R_13650772_SNP [dm6]	A	T	2.305e^-5	0.665	INTRON rin
3R	9476516	3R_9476516_SNP [dm3] 3R_13650794_SNP [dm6]	G	C	2.305e^-5	0.665	INTRON rin
3L	3499962	3L_3499962_SNP [dm3] 3L_3499962_SNP [dm6]	C	T	2.400e^-5	0.665	INTRON CG42324
2L	7333251	2L_7333251_SNP [dm3] 2L_7333251_SNP [dm6]	T	A	2.465e^-5	0.665	UPSTREAM Wnt6 INTERGENIC
3L	2105204	3L_2105204_SNP [dm3] 3L_2105204_SNP [dm6]	T	C	2.495e^-5	0.665	NON_SYNONYMOUS_CODING sls	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	8517999	3R_8517999_SNP [dm3] 3R_12692277_SNP [dm6]	G	T	2.524e^-5	0.665	SYNONYMOUS_CODING CG31347 UPSTREAM Su_fu_ INTRON Arp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12474432	2R_12474432_INS [dm3] 2R_16586927_INS [dm6]	T	TT	2.563e^-5	0.665	DOWNSTREAM CG8311 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	9235815	2L_9235815_SNP [dm3] 2L_9235815_SNP [dm6]	T	A	2.564e^-5	0.665	DOWNSTREAM tRNA:CR31885 INTRON tai
2R	1928321	2R_1928321_SNP [dm3] 2R_6040816_SNP [dm6]	T	A	2.564e^-5	0.665	UPSTREAM CG14591 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	1928456	2R_1928456_SNP [dm3] 2R_6040951_SNP [dm6]	C	G	2.564e^-5	0.665	UPSTREAM CG14591 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	12705311	3L_12705311_SNP [dm3] 3L_12712211_SNP [dm6]	A	G	2.565e^-5	0.665	INTERGENIC
2R	2035245	2R_2035245_SNP [dm3] 2R_6147740_SNP [dm6]	C	G	2.568e^-5	0.665	INTRON EcR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2035267	2R_2035267_SNP [dm3] 2R_6147762_SNP [dm6]	T	C	2.568e^-5	0.665	INTRON EcR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9151139	2L_9151139_INS [dm3] 2L_9151139_INS [dm6]	A	AA	2.575e^-5	0.665	UPSTREAM CG32982 INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	4635922	3L_4635922_SNP [dm3] 3L_4635922_SNP [dm6]	C	A	2.632e^-5	0.665	DOWNSTREAM axo INTRON axo	TF binding site mE1_TFBS_hkb
X	17949594	X_17949594_SNP [dm3] X_18055561_SNP [dm6]	C	G	2.637e^-5	0.665	INTRON Sh
2L	22524909	2L_22524909_SNP [dm3] 2L_22632177_SNP [dm6]	C	A	2.673e^-5	0.665	INTRON CG40006
2R	800295	2R_800295_SNP [dm3] 2R_4912790_SNP [dm6]	G	A	2.678e^-5	0.665	INTERGENIC	transposable element FlyBase
2R	6746413	2R_6746413_SNP [dm3] 2R_10858908_SNP [dm6]	A	G	2.706e^-5	0.665	UPSTREAM CR44302 INTRON CG30015
2L	14107422	2L_14107422_SNP [dm3] 2L_14107422_SNP [dm6]	T	C	2.709e^-5	0.665	UTR_3_PRIME CG16879 DOWNSTREAM CG16879 & 1 other
2L	22931397	2L_22931397_SNP [dm3] 2L_23038665_SNP [dm6]	T	A	2.723e^-5	0.665	INTERGENIC
2L	22980612	2L_22980612_DEL [dm3] 2L_23087880_DEL [dm6]	CATATGCAGCGACTGTGTAT...	C	2.723e^-5	0.665	INTERGENIC
X	11164903	X_11164903_SNP [dm3] X_11270870_SNP [dm6]	T	C	2.725e^-5	0.665	INTRON CG44422
X	8878082	X_8878082_SNP [dm3] X_8984049_SNP [dm6]	G	A	2.749e^-5	0.665	SYNONYMOUS_CODING CG12662 INTRON rdgA & 1 other
2R	5195024	2R_5195024_SNP [dm3] 2R_9307519_SNP [dm6]	G	A	2.768e^-5	0.665	SYNONYMOUS_CODING Myd88	TF binding site mE1_TFBS_cad
2L	9079121	2L_9079121_SNP [dm3] 2L_9079121_SNP [dm6]	C	T	2.845e^-5	0.665	INTERGENIC
2R	19823033	2R_19823033_SNP [dm3] 2R_23935510_SNP [dm6]	T	A	2.888e^-5	0.665	INTRON Ca-P60A
2L	22450549	2L_22450549_SNP [dm3] 2L_22557817_SNP [dm6]	G	A	3.208e^-5	0.665	INTERGENIC
2L	9087754	2L_9087754_SNP [dm3] 2L_9087754_SNP [dm6]	T	C	3.324e^-5	0.665	SYNONYMOUS_CODING Toll-4	TF binding site BDTNP1_TFBS_twi
2L	2797927	2L_2797927_SNP [dm3] 2L_2797927_SNP [dm6]	T	G	3.342e^-5	0.665	INTRON Syt1 EXON CR43821	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	4478083	2L_4478083_SNP [dm3] 2L_4478083_SNP [dm6]	T	C	3.410e^-5	0.665	UTR_3_PRIME dp
X	17943498	X_17943498_SNP [dm3] X_18049465_SNP [dm6]	C	G	3.460e^-5	0.665	DOWNSTREAM CG15373 INTRON Sh
2R	13693541	2R_13693541_SNP [dm3] 2R_17806036_SNP [dm6]	A	T	3.501e^-5	0.665	INTRON grh	TF binding site BDTNP1_TFBS_dl
X	17949626	X_17949626_SNP [dm3] X_18055593_SNP [dm6]	A	T	3.614e^-5	0.665	INTRON Sh
3R	26599617	3R_26599617_SNP [dm3] 3R_30773895_SNP [dm6]	G	A	3.700e^-5	0.665	INTRON zfh1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2L	14920274	2L_14920274_SNP [dm3] 2L_14920274_SNP [dm6]	G	T	3.709e^-5	0.665	INTRON CG42313
3R	26659694	3R_26659694_SNP [dm3] 3R_30833972_SNP [dm6]	C	A	3.747e^-5	0.665	INTRON CG15544
X	2908486	X_2908486_SNP [dm3] X_3014453_SNP [dm6]	A	C	3.771e^-5	0.665	INTRON kirre
3R	26963771	3R_26963771_SNP [dm3] 3R_31138049_SNP [dm6]	A	T	3.790e^-5	0.665	INTRON Gycbeta100B
2R	10624769	2R_10624769_INS [dm3] 2R_14737264_INS [dm6]	C	CAA	3.794e^-5	0.665	DOWNSTREAM CR43428 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	1759415	3L_1759415_SNP [dm3] 3L_1759415_SNP [dm6]	G	A	3.803e^-5	0.665	SYNONYMOUS_CODING Dhc62B DOWNSTREAM CG8001	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13968410	3L_13968410_SNP [dm3] 3L_13975310_SNP [dm6]	A	G	3.805e^-5	0.665	INTRON Hsc70-1
2L	9985299	2L_9985299_SNP [dm3] 2L_9985299_SNP [dm6]	T	A	3.819e^-5	0.665	UPSTREAM CR13130 INTRON bib	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12705191	3L_12705191_DEL [dm3] 3L_12712091_DEL [dm6]	AAATATCCTA	A	3.820e^-5	0.665	INTERGENIC
2L	13425332	2L_13425332_SNP [dm3] 2L_13425332_SNP [dm6]	C	A	3.908e^-5	0.665	INTRON CG42784
X	14708245	X_14708245_SNP [dm3] X_14814212_SNP [dm6]	T	C	3.911e^-5	0.665	INTRON rut
X	6115489	X_6115489_SNP [dm3] X_6221456_SNP [dm6]	G	A	4.104e^-5	0.665	SYNONYMOUS_CODING Efr
X	4293670	X_4293670_SNP [dm3] X_4399637_SNP [dm6]	A	T	4.132e^-5	0.665	INTRON CR32773
2R	7561373	2R_7561373_SNP [dm3] 2R_11673868_SNP [dm6]	T	A	4.147e^-5	0.665	INTRON Roc2 & 1 other
3R	26963749	3R_26963749_SNP [dm3] 3R_31138027_SNP [dm6]	T	C	4.181e^-5	0.665	INTRON Gycbeta100B
3R	16067745	3R_16067745_SNP [dm3] 3R_20242023_SNP [dm6]	A	C	4.182e^-5	0.665	INTRON Nlg4
3L	2105272	3L_2105272_SNP [dm3] 3L_2105272_SNP [dm6]	G	T	4.228e^-5	0.665	SYNONYMOUS_CODING sls	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	18604425	3R_18604425_SNP [dm3] 3R_22778703_SNP [dm6]	A	C	4.266e^-5	0.665	INTRON CG7029 EXON CR43654	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	2397231	X_2397231_SNP [dm3] X_2503198_SNP [dm6]	T	A	4.353e^-5	0.665	INTRON trol
3R	19909981	3R_19909981_SNP [dm3] 3R_24084259_SNP [dm6]	A	G	4.414e^-5	0.665	INTRON 4EHP
3R	19250179	3R_19250179_SNP [dm3] 3R_23424457_SNP [dm6]	T	A	4.418e^-5	0.665	INTRON CG4374
X	2908503	X_2908503_SNP [dm3] X_3014470_SNP [dm6]	T	C	4.461e^-5	0.665	INTRON kirre
2L	22473028	2L_22473028_SNP [dm3] 2L_22580296_SNP [dm6]	A	G	4.520e^-5	0.665	SYNONYMOUS_CODING CG17494	TF binding site mE1_TFBS_sens
3L	19249565	3L_19249565_SNP [dm3] 3L_19256465_SNP [dm6]	T	C	4.536e^-5	0.665	SYNONYMOUS_CODING rept DOWNSTREAM nes	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	12813552	X_12813552_SNP [dm3] X_12919519_SNP [dm6]	G	A	4.546e^-5	0.665	UTR_5_PRIME fne
X	2908522	X_2908522_SNP [dm3] X_3014489_SNP [dm6]	G	A	4.550e^-5	0.665	INTRON kirre
3L	12705358	3L_12705358_INS [dm3] 3L_12712258_INS [dm6]	C	CACT	4.616e^-5	0.665	INTERGENIC
X	2397230	X_2397230_SNP [dm3] X_2503197_SNP [dm6]	T	A	4.676e^-5	0.665	INTRON trol
X	2397235	X_2397235_SNP [dm3] X_2503202_SNP [dm6]	G	T	4.676e^-5	0.665	INTRON trol
3L	3792170	3L_3792170_SNP [dm3] 3L_3792170_SNP [dm6]	A	G	4.740e^-5	0.665	DOWNSTREAM CG32266 INTRON CG32264
2L	14425074	2L_14425074_SNP [dm3] 2L_14425074_SNP [dm6]	T	G	4.741e^-5	0.665	INTRON Cpr35B	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	22427226	2L_22427226_SNP [dm3] 2L_22534494_SNP [dm6]	T	C	4.806e^-5	0.665	UTR_3_PRIME RpL5 DOWNSTREAM RpL5 & 1 other
3R	9442936	3R_9442936_SNP [dm3] 3R_13617214_SNP [dm6]	G	A	4.833e^-5	0.665	DOWNSTREAM CG9269 & 1 other INTERGENIC
3R	26489083	3R_26489083_SNP [dm3] 3R_30663361_SNP [dm6]	T	C	4.858e^-5	0.665	INTERGENIC
3R	26489084	3R_26489084_SNP [dm3] 3R_30663362_SNP [dm6]	C	T	4.858e^-5	0.665	INTERGENIC
2L	17405326	2L_17405326_INS [dm3] 2L_17405326_INS [dm6]	T	TT	4.869e^-5	0.665	DOWNSTREAM CLIP-190 INTRON CLIP-190
3L	2105103	3L_2105103_SNP [dm3] 3L_2105103_SNP [dm6]	A	C	4.917e^-5	0.665	INTRON sls	TF binding site mE1_TFBS_chinmo
X	5897605	X_5897605_SNP [dm3] X_6003572_SNP [dm6]	C	T	4.956e^-5	0.665	INTRON CR44498
2L	987431	2L_987431_SNP [dm3] 2L_987431_SNP [dm6]	T	A	4.969e^-5	0.665	DOWNSTREAM CR44801 INTERGENIC
2L	14920225	2L_14920225_SNP [dm3] 2L_14920225_SNP [dm6]	G	T	4.972e^-5	0.665	INTRON CG42313
2R	13552926	2R_13552926_SNP [dm3] 2R_17665421_SNP [dm6]	G	T	5.055e^-5	0.665	UPSTREAM eIF3-S8 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_Ubx
2L	7231464	2L_7231464_SNP [dm3] 2L_7231464_SNP [dm6]	A	G	5.127e^-5	0.665	DOWNSTREAM CG43800 INTRON Ndae1
3R	22894448	3R_22894448_SNP [dm3] 3R_27068726_SNP [dm6]	T	C	5.231e^-5	0.665	INTRON spz
2L	2673362	2L_2673362_INS [dm3] 2L_2673362_INS [dm6]	A	GATTTGCG	5.254e^-5	0.665	INTERGENIC
2L	3226986	2L_3226986_SNP [dm3] 2L_3226986_SNP [dm6]	C	A	5.266e^-5	0.665	INTERGENIC
X	18842174	X_18842174_SNP [dm3] X_18948141_SNP [dm6]	C	G	5.269e^-5	0.665	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	1018952	2L_1018952_SNP [dm3] 2L_1018952_SNP [dm6]	T	C	5.438e^-5	0.665	INTRON IA-2
3R	9476502	3R_9476502_SNP [dm3] 3R_13650780_SNP [dm6]	C	G	5.461e^-5	0.665	INTRON rin
2R	12474655	2R_12474655_SNP [dm3] 2R_16587150_SNP [dm6]	G	A	5.533e^-5	0.665	UTR_3_PRIME CG8311 DOWNSTREAM RpLP2	TF binding site BDTNP1_TFBS_dl
X	2733343	X_2733343_SNP [dm3] X_2839310_SNP [dm6]	G	A	5.556e^-5	0.665	INTRON kirre
X	8712594	X_8712594_SNP [dm3] X_8818561_SNP [dm6]	G	C	5.568e^-5	0.665	INTERGENIC
X	7743893	X_7743893_SNP [dm3] X_7849860_SNP [dm6]	C	A	5.599e^-5	0.665	INTERGENIC
2R	18219090	2R_18219090_SNP [dm3] 2R_22331585_SNP [dm6]	C	G	5.722e^-5	0.665	SYNONYMOUS_CODING T3dh UPSTREAM pgc INTRON pgc
2L	9079277	2L_9079277_SNP [dm3] 2L_9079277_SNP [dm6]	C	A	5.820e^-5	0.665	INTERGENIC
2L	10332091	2L_10332091_SNP [dm3] 2L_10332091_SNP [dm6]	T	A	5.835e^-5	0.665	SYNONYMOUS_CODING CG5037 UPSTREAM CG5375	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10332247	2L_10332247_SNP [dm3] 2L_10332247_SNP [dm6]	C	T	5.835e^-5	0.665	SYNONYMOUS_CODING CG5037	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	2085275	2R_2085275_SNP [dm3] 2R_6197770_SNP [dm6]	G	A	5.873e^-5	0.665	UTR_3_PRIME CG30432	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3L	5442569	3L_5442569_SNP [dm3] 3L_5449469_SNP [dm6]	T	A	5.951e^-5	0.665	INTERGENIC
2L	2081979	2L_2081979_SNP [dm3] 2L_2081979_SNP [dm6]	T	C	6.024e^-5	0.665	UPSTREAM CR44808 DOWNSTREAM CG12674 INTRON dpr3	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7906844	2L_7906844_SNP [dm3] 2L_7906844_SNP [dm6]	T	A	6.040e^-5	0.665	INTRON Snoo
2L	7907494	2L_7907494_SNP [dm3] 2L_7907494_SNP [dm6]	T	A	6.040e^-5	0.665	INTRON Snoo	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	7681061	X_7681061_SNP [dm3] X_7787028_SNP [dm6]	T	C	6.061e^-5	0.665	INTERGENIC
2R	2826967	2R_2826967_SNP [dm3] 2R_6939462_SNP [dm6]	T	C	6.070e^-5	0.665	INTRON mim
2R	8564595	2R_8564595_SNP [dm3] 2R_12677090_SNP [dm6]	A	G	6.093e^-5	0.665	UPSTREAM CG42708 INTRON CG42708
X	11321004	X_11321004_SNP [dm3] X_11426971_SNP [dm6]	T	A	6.271e^-5	0.665	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	2395411	2R_2395411_SNP [dm3] 2R_6507906_SNP [dm6]	T	C	6.282e^-5	0.665	DOWNSTREAM CR45127 INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	13927607	2L_13927607_SNP [dm3] 2L_13927607_SNP [dm6]	C	T	6.288e^-5	0.665	INTRON Ance-3
X	17361305	X_17361305_SNP [dm3] X_17467272_SNP [dm6]	C	T	6.293e^-5	0.665	INTRON CG43658
2R	1874679	2R_1874679_SNP [dm3] 2R_5987174_SNP [dm6]	C	T	6.420e^-5	0.665	INTRON Src42A
2R	1878861	2R_1878861_SNP [dm3] 2R_5991356_SNP [dm6]	A	T	6.420e^-5	0.665	INTRON Src42A
2R	1884565	2R_1884565_SNP [dm3] 2R_5997060_SNP [dm6]	A	G	6.420e^-5	0.665	INTRON Src42A
2R	1884929	2R_1884929_SNP [dm3] 2R_5997424_SNP [dm6]	T	A	6.420e^-5	0.665	INTRON Src42A
2R	1897565	2R_1897565_SNP [dm3] 2R_6010060_SNP [dm6]	T	C	6.420e^-5	0.665	INTRON Src42A
2R	1903335	2R_1903335_SNP [dm3] 2R_6015830_SNP [dm6]	G	A	6.420e^-5	0.665	UPSTREAM Act42A INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2R	1905638	2R_1905638_SNP [dm3] 2R_6018133_SNP [dm6]	C	A	6.420e^-5	0.665	NON_SYNONYMOUS_CODING Pngl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	1908568	2R_1908568_SNP [dm3] 2R_6021063_SNP [dm6]	A	G	6.420e^-5	0.665	UTR_3_PRIME dream DOWNSTREAM Pngl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	1911352	2R_1911352_SNP [dm3] 2R_6023847_SNP [dm6]	T	G	6.420e^-5	0.665	UPSTREAM dream INTERGENIC
2R	1918565	2R_1918565_DEL [dm3] 2R_6031060_DEL [dm6]	TATC	CT	6.420e^-5	0.665	INTRON SCAP
2R	1920627	2R_1920627_SNP [dm3] 2R_6033122_SNP [dm6]	G	A	6.420e^-5	0.665	INTRON SCAP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	1927386	2R_1927386_SNP [dm3] 2R_6039881_SNP [dm6]	C	T	6.420e^-5	0.665	INTRON CG14591	TF binding site BDTNP1_TFBS_dl
2R	1927428	2R_1927428_DEL [dm3] 2R_6039923_DEL [dm6]	ACATGC	A	6.420e^-5	0.665	INTRON CG14591	TF binding site BDTNP1_TFBS_dl
2R	1933267	2R_1933267_SNP [dm3] 2R_6045762_SNP [dm6]	A	C	6.420e^-5	0.665	DOWNSTREAM Tbce INTERGENIC	transposable element FlyBase
3L	4603420	3L_4603420_SNP [dm3] 3L_4603420_SNP [dm6]	C	A	6.420e^-5	0.665	INTRON Src64B
X	14814858	X_14814858_SNP [dm3] X_14920825_SNP [dm6]	G	A	6.495e^-5	0.665	SYNONYMOUS_CODING CG9503 INTRON Flo2
2L	18011462	2L_18011462_SNP [dm3] 2L_18011462_SNP [dm6]	C	G	6.550e^-5	0.665	UTR_5_PRIME elfless UPSTREAM rdo
2L	9984974	2L_9984974_SNP [dm3] 2L_9984974_SNP [dm6]	G	A	6.557e^-5	0.665	NON_SYNONYMOUS_CODING bib UPSTREAM CR13130	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	24576873	3R_24576873_SNP [dm3] 3R_28751151_SNP [dm6]	A	T	6.586e^-5	0.665	SYNONYMOUS_CODING CG10000
3R	24576876	3R_24576876_SNP [dm3] 3R_28751154_SNP [dm6]	T	A	6.586e^-5	0.665	SYNONYMOUS_CODING CG10000
X	8878169	X_8878169_SNP [dm3] X_8984136_SNP [dm6]	C	G	6.603e^-5	0.665	SYNONYMOUS_CODING CG12662 INTRON rdgA & 1 other
3R	25205255	3R_25205255_SNP [dm3] 3R_29379533_SNP [dm6]	G	A	6.637e^-5	0.665	INTRON Ptp99A
X	4707004	X_4707004_SNP [dm3] X_4812971_SNP [dm6]	A	T	6.637e^-5	0.665	INTERGENIC
2L	22923906	2L_22923906_SNP [dm3] 2L_23031174_SNP [dm6]	G	C	6.728e^-5	0.665	INTERGENIC
2R	1372307	2R_1372307_SNP [dm3] 2R_5484802_SNP [dm6]	C	A	6.834e^-5	0.665	INTRON CG30440
2R	13341748	2R_13341748_SNP [dm3] 2R_17454243_SNP [dm6]	T	A	6.843e^-5	0.665	SYNONYMOUS_CODING CG10764
2L	8412752	2L_8412752_DEL [dm3] 2L_8412752_DEL [dm6]	AATA	A	6.925e^-5	0.665	UTR_3_PRIME CG13398 UPSTREAM CG13397
2L	14425051	2L_14425051_SNP [dm3] 2L_14425051_SNP [dm6]	T	A	6.989e^-5	0.665	NON_SYNONYMOUS_CODING Cpr35B	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	14425102	2L_14425102_SNP [dm3] 2L_14425102_SNP [dm6]	C	A	6.989e^-5	0.665	INTRON Cpr35B	TF binding site mE1_TFBS_chinmo
2L	14425108	2L_14425108_SNP [dm3] 2L_14425108_SNP [dm6]	T	G	6.989e^-5	0.665	INTRON Cpr35B	TF binding site mE1_TFBS_chinmo
2L	14425121	2L_14425121_SNP [dm3] 2L_14425121_SNP [dm6]	T	A	6.989e^-5	0.665	NON_SYNONYMOUS_CODING Cpr35B SPLICE_SITE_REGION Cpr35B	TF binding site mE1_TFBS_chinmo
2L	558766	2L_558766_SNP [dm3] 2L_558766_SNP [dm6]	A	T	7.000e^-5	0.665	UTR_5_PRIME rempA UPSTREAM CG2789 INTRON rempA	TF binding site mE1_TFBS_chinmo
X	17945059	X_17945059_SNP [dm3] X_18051026_SNP [dm6]	A	T	7.005e^-5	0.665	INTRON Sh	TF binding site BDTNP1_TFBS_dl
2R	10972523	2R_10972523_SNP [dm3] 2R_15085018_SNP [dm6]	G	C	7.030e^-5	0.665	INTERGENIC
3R	22445849	3R_22445849_SNP [dm3] 3R_26620127_SNP [dm6]	C	T	7.101e^-5	0.665	UTR_3_PRIME TwdlM DOWNSTREAM TwdlP
3R	14189803	3R_14189803_SNP [dm3] 3R_18364081_SNP [dm6]	A	T	7.165e^-5	0.665	SYNONYMOUS_CODING CG7669 DOWNSTREAM WRNexo
3L	5088517	3L_5088517_SNP [dm3] 3L_5088517_SNP [dm6]	A	G	7.224e^-5	0.665	INTERGENIC
2R	12082069	2R_12082069_SNP [dm3] 2R_16194564_SNP [dm6]	G	A	7.262e^-5	0.665	SYNONYMOUS_CODING calypso DOWNSTREAM clu	TF binding site mE1_TFBS_cad
2R	1923988	2R_1923988_SNP [dm3] 2R_6036483_SNP [dm6]	G	A	7.279e^-5	0.665	UPSTREAM SCAP DOWNSTREAM CG14591 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
2R	1749635	2R_1749635_SNP [dm3] 2R_5862130_SNP [dm6]	C	A	7.323e^-5	0.665	INTERGENIC
2L	8583613	2L_8583613_SNP [dm3] 2L_8583613_SNP [dm6]	A	G	7.378e^-5	0.665	INTRON Sema-1a
3R	25971832	3R_25971832_SNP [dm3] 3R_30146110_SNP [dm6]	G	T	7.404e^-5	0.665	INTRON AdoR
X	2908434	X_2908434_SNP [dm3] X_3014401_SNP [dm6]	G	A	7.410e^-5	0.665	INTRON kirre
X	4706947	X_4706947_SNP [dm3] X_4812914_SNP [dm6]	A	T	7.410e^-5	0.665	INTERGENIC
X	8036042	X_8036042_SNP [dm3] X_8142009_SNP [dm6]	G	A	7.410e^-5	0.665	UTR_5_PRIME Smox DOWNSTREAM CG17982	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
X	8329774	X_8329774_SNP [dm3] X_8435741_SNP [dm6]	C	T	7.410e^-5	0.665	SYNONYMOUS_CODING CG12125	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12158227	2L_12158227_SNP [dm3] 2L_12158227_SNP [dm6]	C	T	7.421e^-5	0.665	INTRON CG31760
2R	1877446	2R_1877446_SNP [dm3] 2R_5989941_SNP [dm6]	T	A	7.429e^-5	0.665	INTRON Src42A
2R	1883462	2R_1883462_SNP [dm3] 2R_5995957_SNP [dm6]	A	C	7.429e^-5	0.665	INTRON Src42A
X	4792295	X_4792295_SNP [dm3] X_4898262_SNP [dm6]	A	G	7.433e^-5	0.665	INTRON CG42594
2L	4586055	2L_4586055_SNP [dm3] 2L_4586055_SNP [dm6]	A	G	7.461e^-5	0.665	INTRON dp
2L	1113940	2L_1113940_SNP [dm3] 2L_1113940_SNP [dm6]	A	G	7.531e^-5	0.665	NON_SYNONYMOUS_CODING CG14340 DOWNSTREAM Pino
X	17945957	X_17945957_SNP [dm3] X_18051924_SNP [dm6]	T	A	7.575e^-5	0.665	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8443797	3R_8443797_SNP [dm3] 3R_12618075_SNP [dm6]	T	C	7.612e^-5	0.665	DOWNSTREAM CR44942 INTERGENIC
2R	1989436	2R_1989436_SNP [dm3] 2R_6101931_SNP [dm6]	G	T	7.696e^-5	0.665	INTRON EcR	TF binding site mE1_TFBS_Trl
2L	22443140	2L_22443140_SNP [dm3] 2L_22550408_SNP [dm6]	T	C	7.697e^-5	0.665	UTR_5_PRIME CG17493	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	10708392	3L_10708392_SNP [dm3] 3L_10715292_SNP [dm6]	C	T	7.765e^-5	0.665	INTERGENIC
2R	1908717	2R_1908717_DEL [dm3] 2R_6021212_DEL [dm6]	TTCT	T	7.785e^-5	0.665	UTR_3_PRIME dream DOWNSTREAM Pngl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	1924492	2R_1924492_SNP [dm3] 2R_6036987_SNP [dm6]	G	A	7.858e^-5	0.665	UTR_3_PRIME CG14591 UPSTREAM SCAP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	2104209	3L_2104209_SNP [dm3] 3L_2104209_SNP [dm6]	C	T	7.876e^-5	0.665	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7300628	2R_7300628_SNP [dm3] 2R_11413123_SNP [dm6]	C	T	7.907e^-5	0.665	INTRON Drip
3R	16348426	3R_16348426_SNP [dm3] 3R_20522704_SNP [dm6]	T	C	7.927e^-5	0.665	INTERGENIC
2R	6167961	2R_6167961_SNP [dm3] 2R_10280456_SNP [dm6]	G	A	8.037e^-5	0.665	SYNONYMOUS_CODING CAP INTRON CAP	TF binding site mE1_TFBS_chinmo
3R	21698296	3R_21698296_SNP [dm3] 3R_25872574_SNP [dm6]	G	A	8.052e^-5	0.665	UTR_3_PRIME CG5890 DOWNSTREAM Tsp96F
2L	8333072	2L_8333072_SNP [dm3] 2L_8333072_SNP [dm6]	T	C	8.129e^-5	0.665	DOWNSTREAM CG14275 INTERGENIC
X	5897601	X_5897601_SNP [dm3] X_6003568_SNP [dm6]	A	G	8.139e^-5	0.665	INTRON CR44498
2R	13855185	2R_13855185_SNP [dm3] 2R_17967680_SNP [dm6]	T	C	8.139e^-5	0.665	INTERGENIC
2R	5193297	2R_5193297_SNP [dm3] 2R_9305792_SNP [dm6]	A	C	8.141e^-5	0.665	INTRON Myd88	TF binding site mE1_TFBS_cad
2R	18477096	2R_18477096_SNP [dm3] 2R_22589591_SNP [dm6]	T	C	8.154e^-5	0.665	INTRON dnr1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	8810597	2L_8810597_SNP [dm3] 2L_8810597_SNP [dm6]	T	C	8.157e^-5	0.665	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8582440	3R_8582440_SNP [dm3] 3R_12756718_SNP [dm6]	G	T	8.167e^-5	0.665	INTRON beat-Vc
3L	3132115	3L_3132115_SNP [dm3] 3L_3132115_SNP [dm6]	G	A	8.268e^-5	0.667	INTRON CG11537
X	17942715	X_17942715_SNP [dm3] X_18048682_SNP [dm6]	A	T	8.382e^-5	0.667	UTR_3_PRIME CG15373 INTRON Sh
X	8707155	X_8707155_SNP [dm3] X_8813122_SNP [dm6]	A	C	8.464e^-5	0.667	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	17961058	X_17961058_SNP [dm3] X_18067025_SNP [dm6]	G	A	8.524e^-5	0.667	SYNONYMOUS_CODING Dhc16F
2L	22466229	2L_22466229_SNP [dm3] 2L_22573497_SNP [dm6]	C	A	8.528e^-5	0.667	INTERGENIC
3L	21854052	3L_21854052_SNP [dm3] 3L_21860952_SNP [dm6]	G	A	8.539e^-5	0.667	INTRON mub	TF binding site mE1_TFBS_inv
2L	10081452	2L_10081452_SNP [dm3] 2L_10081452_SNP [dm6]	G	T	8.729e^-5	0.667	SYNONYMOUS_CODING CG44153	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8984453	2L_8984453_SNP [dm3] 2L_8984453_SNP [dm6]	A	G	8.823e^-5	0.667	INTRON CG13101	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	17882002	2R_17882002_SNP [dm3] 2R_21994497_SNP [dm6]	T	C	8.926e^-5	0.667	INTRON CG34370
X	17942997	X_17942997_DEL [dm3] X_18048964_DEL [dm6]	CCT	C	8.995e^-5	0.667	DOWNSTREAM CG15373 INTRON Sh
2R	2826981	2R_2826981_SNP [dm3] 2R_6939476_SNP [dm6]	A	G	9.074e^-5	0.667	INTRON mim
X	16511429	X_16511429_SNP [dm3] X_16617396_SNP [dm6]	T	G	9.077e^-5	0.667	INTRON CG9782
2L	2798580	2L_2798580_SNP [dm3] 2L_2798580_SNP [dm6]	T	G	9.077e^-5	0.667	UTR_5_PRIME Syt1 DOWNSTREAM CR43821 INTRON Syt1	TF binding site BDTNP1_TFBS_dl
2R	16331868	2R_16331868_SNP [dm3] 2R_20444363_SNP [dm6]	G	A	9.095e^-5	0.667	INTRON CG12484	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	22834034	2L_22834034_DEL [dm3] 2L_22941302_DEL [dm6]	GGAGCCCTCCATGTTTGTAG...	G	9.216e^-5	0.667	UTR_3_PRIME lt DOWNSTREAM lt
2L	22878698	2L_22878698_SNP [dm3] 2L_22985966_SNP [dm6]	C	T	9.216e^-5	0.667	INTRON cta
2L	22909126	2L_22909126_SNP [dm3] 2L_23016394_SNP [dm6]	G	A	9.216e^-5	0.667	INTRON Cht3
2L	22919312	2L_22919312_SNP [dm3] 2L_23026580_SNP [dm6]	T	C	9.216e^-5	0.667	UPSTREAM Cht3 INTERGENIC
2L	13425250	2L_13425250_SNP [dm3] 2L_13425250_SNP [dm6]	G	A	9.234e^-5	0.667	INTRON CG42784
2R	8778014	2R_8778014_SNP [dm3] 2R_12890509_SNP [dm6]	G	A	9.257e^-5	0.667	INTRON vg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13133333	3L_13133333_SNP [dm3] 3L_13140233_SNP [dm6]	G	A	9.322e^-5	0.667	INTERGENIC
3R	26963840	3R_26963840_INS [dm3] 3R_31138118_INS [dm6]	A	AA	9.346e^-5	0.667	INTRON Gycbeta100B
3R	26963842	3R_26963842_SNP [dm3] 3R_31138120_SNP [dm6]	G	A	9.346e^-5	0.667	INTRON Gycbeta100B
3R	25537608	3R_25537608_SNP [dm3] 3R_29711886_SNP [dm6]	A	C	9.365e^-5	0.667	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	5196302	3L_5196302_SNP [dm3] 3L_5203202_SNP [dm6]	T	G	9.421e^-5	0.667	INTRON shep
X	9453212	X_9453212_SNP [dm3] X_9559179_SNP [dm6]	C	T	9.441e^-5	0.667	SYNONYMOUS_CODING Cubn UPSTREAM CR42767	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5045111	3L_5045111_SNP [dm3] 3L_5045111_SNP [dm6]	A	T	9.484e^-5	0.667	INTRON Con
3R	24576857	3R_24576857_SNP [dm3] 3R_28751135_SNP [dm6]	C	A	9.501e^-5	0.667	NON_SYNONYMOUS_CODING CG10000
2L	6630640	2L_6630640_SNP [dm3] 2L_6630640_SNP [dm6]	G	A	9.555e^-5	0.667	INTRON Oatp26F
3R	24500467	3R_24500467_SNP [dm3] 3R_28674745_SNP [dm6]	C	T	9.606e^-5	0.667	UPSTREAM CG9990 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	24579984	3R_24579984_SNP [dm3] 3R_28754262_SNP [dm6]	G	T	9.647e^-5	0.667	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	4721535	2L_4721535_SNP [dm3] 2L_4721535_SNP [dm6]	G	A	9.682e^-5	0.667	UTR_3_PRIME CG34351
3L	10943731	3L_10943731_SNP [dm3] 3L_10950631_SNP [dm6]	A	C	9.735e^-5	0.667	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4705898	X_4705898_SNP [dm3] X_4811865_SNP [dm6]	A	G	9.744e^-5	0.667	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	22818168	2L_22818168_SNP [dm3] 2L_22925436_SNP [dm6]	A	C	9.798e^-5	0.667	NON_SYNONYMOUS_CODING lt UTR_5_PRIME lt
2L	22869210	2L_22869210_SNP [dm3] 2L_22976478_SNP [dm6]	G	T	9.812e^-5	0.667	INTERGENIC
3R	18837366	3R_18837366_SNP [dm3] 3R_23011644_SNP [dm6]	C	T	9.904e^-5	0.667	UPSTREAM CG6688 DOWNSTREAM CR44225 INTERGENIC
2L	4722022	2L_4722022_DEL [dm3] 2L_4722022_DEL [dm6]	AATATGAATAATAT...	A	9.938e^-5	0.667	UTR_3_PRIME CG34351
2L	12158242	2L_12158242_SNP [dm3] 2L_12158242_SNP [dm6]	A	T	9.943e^-5	0.667	INTRON CG31760
2L	9087382	2L_9087382_SNP [dm3] 2L_9087382_SNP [dm6]	C	T	1.002e^-4	0.667	SYNONYMOUS_CODING Toll-4
3R	18837487	3R_18837487_SNP [dm3] 3R_23011765_SNP [dm6]	T	A	1.012e^-4	0.667	UPSTREAM CG6688 DOWNSTREAM CR44225 INTERGENIC
X	17945999	X_17945999_SNP [dm3] X_18051966_SNP [dm6]	T	C	1.014e^-4	0.667	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17946939	X_17946939_SNP [dm3] X_18052906_SNP [dm6]	T	A	1.014e^-4	0.667	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17946958	X_17946958_SNP [dm3] X_18052925_SNP [dm6]	G	A	1.014e^-4	0.667	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17946959	X_17946959_SNP [dm3] X_18052926_SNP [dm6]	G	A	1.014e^-4	0.667	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17946961	X_17946961_SNP [dm3] X_18052928_SNP [dm6]	A	T	1.014e^-4	0.667	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17946977	X_17946977_SNP [dm3] X_18052944_SNP [dm6]	C	T	1.014e^-4	0.667	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	13923286	X_13923286_SNP [dm3] X_14029253_SNP [dm6]	A	G	1.027e^-4	0.667	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16527394	X_16527394_SNP [dm3] X_16633361_SNP [dm6]	C	A	1.029e^-4	0.667	DOWNSTREAM CR45001 INTRON Rok	TF binding site BDTNP1_TFBS_twi
3L	21853814	3L_21853814_SNP [dm3] 3L_21860714_SNP [dm6]	G	A	1.038e^-4	0.667	INTRON mub	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	2742763	2R_2742763_SNP [dm3] 2R_6855258_SNP [dm6]	C	G	1.043e^-4	0.667	INTERGENIC
2R	1903320	2R_1903320_SNP [dm3] 2R_6015815_SNP [dm6]	A	T	1.052e^-4	0.667	UPSTREAM Act42A INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3R	21696851	3R_21696851_SNP [dm3] 3R_25871129_SNP [dm6]	C	T	1.070e^-4	0.667	UTR_3_PRIME CG5890	TF binding site mE1_TFBS_kn
3L	1132329	3L_1132329_SNP [dm3] 3L_1132329_SNP [dm6]	C	A	1.081e^-4	0.667	INTERGENIC	regulatory region REDfly_CRMs
2L	8398469	2L_8398469_DEL [dm3] 2L_8398469_DEL [dm6]	GTTTTCGT	G	1.085e^-4	0.667	UPSTREAM CG13386 DOWNSTREAM CG13385 INTERGENIC
2L	2081978	2L_2081978_SNP [dm3] 2L_2081978_SNP [dm6]	C	T	1.091e^-4	0.667	UPSTREAM CR44808 DOWNSTREAM CG12674 INTRON dpr3	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	11322016	3R_11322016_SNP [dm3] 3R_15496294_SNP [dm6]	A	C	1.099e^-4	0.667	DOWNSTREAM CG5213 INTERGENIC
3R	26849301	3R_26849301_INS [dm3] 3R_31023579_INS [dm6]	C	CC	1.108e^-4	0.667	INTERGENIC
2R	17877454	2R_17877454_SNP [dm3] 2R_21989949_SNP [dm6]	G	A	1.108e^-4	0.667	INTRON CG34370
X	18456881	X_18456881_SNP [dm3] X_18562848_SNP [dm6]	A	G	1.120e^-4	0.667	INTRON Bx
2R	7673484	2R_7673484_SNP [dm3] 2R_11785979_SNP [dm6]	A	C	1.123e^-4	0.667	INTRON ths
2R	17877455	2R_17877455_SNP [dm3] 2R_21989950_SNP [dm6]	A	C	1.127e^-4	0.667	INTRON CG34370
2R	17881959	2R_17881959_SNP [dm3] 2R_21994454_SNP [dm6]	T	G	1.127e^-4	0.667	INTRON CG34370
X	15040663	X_15040663_SNP [dm3] X_15146630_SNP [dm6]	G	T	1.130e^-4	0.667	INTRON CG9095
2R	12474535	2R_12474535_SNP [dm3] 2R_16587030_SNP [dm6]	A	C	1.133e^-4	0.667	DOWNSTREAM CG8311 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11463578	3L_11463578_SNP [dm3] 3L_11470478_SNP [dm6]	A	T	1.134e^-4	0.667	INTERGENIC
3R	26662847	3R_26662847_SNP [dm3] 3R_30837125_SNP [dm6]	G	T	1.146e^-4	0.667	INTRON CG15544
X	17950439	X_17950439_SNP [dm3] X_18056406_SNP [dm6]	G	T	1.146e^-4	0.667	INTRON Sh
3R	18837651	3R_18837651_SNP [dm3] 3R_23011929_SNP [dm6]	A	C	1.147e^-4	0.667	UPSTREAM CG6688 EXON CR44225	TF binding site mE1_TFBS_cad
2R	11436376	2R_11436376_SNP [dm3] 2R_15548871_SNP [dm6]	C	G	1.148e^-4	0.667	INTRON CG8192
2L	506116	2L_506116_SNP [dm3] 2L_506116_SNP [dm6]	C	T	1.155e^-4	0.667	INTRON ush
2L	506158	2L_506158_SNP [dm3] 2L_506158_SNP [dm6]	C	T	1.155e^-4	0.667	INTRON ush
X	7680981	X_7680981_SNP [dm3] X_7786948_SNP [dm6]	C	T	1.157e^-4	0.667	INTERGENIC
2R	14655776	2R_14655776_SNP [dm3] 2R_18768271_SNP [dm6]	T	C	1.167e^-4	0.667	SPLICE_SITE_REGION Mctp INTRON Mctp	TF binding site mE1_TFBS_chinmo
2L	9093670	2L_9093670_SNP [dm3] 2L_9093670_SNP [dm6]	C	T	1.170e^-4	0.667	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	17881975	2R_17881975_SNP [dm3] 2R_21994470_SNP [dm6]	T	A	1.170e^-4	0.667	INTRON CG34370
2L	17346503	2L_17346503_SNP [dm3] 2L_17346503_SNP [dm6]	G	T	1.174e^-4	0.667	INTERGENIC
2R	19235786	2R_19235786_SNP [dm3] 2R_23348263_SNP [dm6]	G	A	1.177e^-4	0.667	UPSTREAM CG3502 DOWNSTREAM CG9863 INTERGENIC
3L	13491967	3L_13491967_DEL [dm3] 3L_13498867_DEL [dm6]	TTTT	T	1.178e^-4	0.667	INTRON Tgi
3R	3823371	3R_3823371_SNP [dm3] 3R_7997649_SNP [dm6]	C	T	1.179e^-4	0.667	INTERGENIC
2R	8564723	2R_8564723_SNP [dm3] 2R_12677218_SNP [dm6]	T	C	1.184e^-4	0.667	UPSTREAM CG42708 INTRON CG42708
3R	16945906	3R_16945906_SNP [dm3] 3R_21120184_SNP [dm6]	C	A	1.193e^-4	0.667	UTR_3_PRIME slmb DOWNSTREAM slmb
X	17944049	X_17944049_SNP [dm3] X_18050016_SNP [dm6]	T	C	1.193e^-4	0.667	INTRON Sh
2L	6107338	2L_6107338_SNP [dm3] 2L_6107338_SNP [dm6]	C	T	1.197e^-4	0.667	INTRON stai
X	14822752	X_14822752_SNP [dm3] X_14928719_SNP [dm6]	C	T	1.197e^-4	0.667	SYNONYMOUS_CODING CG32591 INTRON Flo2
2L	22452326	2L_22452326_SNP [dm3] 2L_22559594_SNP [dm6]	G	T	1.200e^-4	0.667	INTERGENIC
3L	9694755	3L_9694755_SNP [dm3] 3L_9701655_SNP [dm6]	G	T	1.220e^-4	0.667	INTRON CG6761	TF binding site mE1_TFBS_cad
2L	16074166	2L_16074166_SNP [dm3] 2L_16074166_SNP [dm6]	C	T	1.220e^-4	0.667	UPSTREAM CR44870 INTRON beat-Ia
X	8340662	X_8340662_SNP [dm3] X_8446629_SNP [dm6]	A	T	1.227e^-4	0.667	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19909783	3R_19909783_INS [dm3] 3R_24084061_INS [dm6]	A	AA	1.232e^-4	0.667	INTRON 4EHP
2L	2686003	2L_2686003_SNP [dm3] 2L_2686003_SNP [dm6]	G	A	1.237e^-4	0.667	INTRON CG31690
3R	14050541	3R_14050541_SNP [dm3] 3R_18224819_SNP [dm6]	G	A	1.239e^-4	0.667	SYNONYMOUS_CODING CG7993 DOWNSTREAM CG7168	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6167958	2R_6167958_SNP [dm3] 2R_10280453_SNP [dm6]	A	T	1.250e^-4	0.667	SYNONYMOUS_CODING CAP INTRON CAP	TF binding site mE1_TFBS_chinmo
2L	13927075	2L_13927075_SNP [dm3] 2L_13927075_SNP [dm6]	C	T	1.254e^-4	0.667	INTRON Ance-3
2R	10624775	2R_10624775_INS [dm3] 2R_14737270_INS [dm6]	A	AAA	1.258e^-4	0.667	DOWNSTREAM CR43428 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	4025011	3L_4025011_SNP [dm3] 3L_4025011_SNP [dm6]	A	G	1.270e^-4	0.667	SYNONYMOUS_CODING CG11594
2R	4871407	2R_4871407_SNP [dm3] 2R_8983902_SNP [dm6]	T	C	1.273e^-4	0.667	INTRON CG8213
3L	2773702	3L_2773702_SNP [dm3] 3L_2773702_SNP [dm6]	C	A	1.274e^-4	0.667	NON_SYNONYMOUS_CODING CG12093 UPSTREAM Atg2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	11744288	X_11744288_SNP [dm3] X_11850255_SNP [dm6]	A	G	1.286e^-4	0.667	UPSTREAM CR45619 DOWNSTREAM p24-1 INTERGENIC
X	16410025	X_16410025_SNP [dm3] X_16515992_SNP [dm6]	A	G	1.291e^-4	0.667	INTRON para
2R	12034400	2R_12034400_SNP [dm3] 2R_16146895_SNP [dm6]	T	C	1.297e^-4	0.667	DOWNSTREAM Aats-cys INTRON Ext2
2R	12034476	2R_12034476_SNP [dm3] 2R_16146971_SNP [dm6]	T	A	1.297e^-4	0.667	SYNONYMOUS_CODING Ext2
2R	14655772	2R_14655772_SNP [dm3] 2R_18768267_SNP [dm6]	A	G	1.300e^-4	0.667	SPLICE_SITE_REGION Mctp INTRON Mctp	TF binding site mE1_TFBS_chinmo
3R	19211719	3R_19211719_SNP [dm3] 3R_23385997_SNP [dm6]	G	C	1.304e^-4	0.667	INTERGENIC	TF binding site mE1_TFBS_Trl
X	14718397	X_14718397_DEL [dm3] X_14824364_DEL [dm6]	TATC	A	1.307e^-4	0.667	INTRON rut	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5347780	2L_5347780_SNP [dm3] 2L_5347780_SNP [dm6]	A	G	1.309e^-4	0.667	INTRON nompC
2L	8984424	2L_8984424_SNP [dm3] 2L_8984424_SNP [dm6]	G	A	1.309e^-4	0.667	INTRON CG13101	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	8984446	2L_8984446_SNP [dm3] 2L_8984446_SNP [dm6]	T	A	1.309e^-4	0.667	INTRON CG13101	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	2699812	2R_2699812_SNP [dm3] 2R_6812307_SNP [dm6]	C	T	1.316e^-4	0.667	UPSTREAM koi INTRON koi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	4093274	3L_4093274_SNP [dm3] 3L_4093274_SNP [dm6]	G	T	1.326e^-4	0.667	NON_SYNONYMOUS_CODING CG14990 DOWNSTREAM CG14989	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9713419	3R_9713419_SNP [dm3] 3R_13887697_SNP [dm6]	C	T	1.328e^-4	0.667	INTERGENIC
3R	14176038	3R_14176038_SNP [dm3] 3R_18350316_SNP [dm6]	T	C	1.344e^-4	0.667	INTRON CG15803
X	20396944	X_20396944_SNP [dm3] X_20525917_SNP [dm6]	G	A	1.346e^-4	0.667	UPSTREAM Tak1 INTERGENIC	TF binding site mE1_TFBS_zfh1 transposable element FlyBase
X	20396960	X_20396960_INS [dm3] X_20525933_INS [dm6]	AA	GTTGTT	1.346e^-4	0.667	INTERGENIC	transposable element FlyBase
2L	5913498	2L_5913498_DEL [dm3] 2L_5913498_DEL [dm6]	TCTCTTTA	T	1.349e^-4	0.667	INTRON bchs	TF binding site mE1_TFBS_cad
2L	5913508	2L_5913508_INS [dm3] 2L_5913508_INS [dm6]	C	TATTT	1.349e^-4	0.667	INTRON bchs	TF binding site mE1_TFBS_cad
3L	10943321	3L_10943321_SNP [dm3] 3L_10950221_SNP [dm6]	A	G	1.351e^-4	0.667	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14655764	2R_14655764_SNP [dm3] 2R_18768259_SNP [dm6]	T	C	1.368e^-4	0.667	INTRON Mctp	TF binding site mE1_TFBS_chinmo
2L	22930324	2L_22930324_SNP [dm3] 2L_23037592_SNP [dm6]	T	C	1.370e^-4	0.667	INTERGENIC
2R	16266407	2R_16266407_SNP [dm3] 2R_20378902_SNP [dm6]	G	A	1.373e^-4	0.667	INTERGENIC
3L	16543046	3L_16543046_SNP [dm3] 3L_16549946_SNP [dm6]	G	A	1.375e^-4	0.667	INTERGENIC
X	17943939	X_17943939_SNP [dm3] X_18049906_SNP [dm6]	A	T	1.383e^-4	0.667	INTRON Sh
X	17943981	X_17943981_SNP [dm3] X_18049948_SNP [dm6]	T	C	1.383e^-4	0.667	INTRON Sh
X	17943993	X_17943993_SNP [dm3] X_18049960_SNP [dm6]	G	T	1.383e^-4	0.667	INTRON Sh
X	17946841	X_17946841_SNP [dm3] X_18052808_SNP [dm6]	A	T	1.389e^-4	0.667	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17946842	X_17946842_SNP [dm3] X_18052809_SNP [dm6]	C	T	1.389e^-4	0.667	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	22894561	2L_22894561_SNP [dm3] 2L_23001829_SNP [dm6]	G	T	1.392e^-4	0.667	INTRON Cht3
2R	2395379	2R_2395379_SNP [dm3] 2R_6507874_SNP [dm6]	T	C	1.400e^-4	0.667	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	19643800	3R_19643800_SNP [dm3] 3R_23818078_SNP [dm6]	T	G	1.401e^-4	0.667	INTRON CG34355 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	22904653	3R_22904653_SNP [dm3] 3R_27078931_SNP [dm6]	A	G	1.405e^-4	0.667	SYNONYMOUS_CODING CG14257	TF binding site mE1_TFBS_chinmo
3L	3597882	3L_3597882_SNP [dm3] 3L_3597882_SNP [dm6]	C	T	1.406e^-4	0.667	INTRON Eip63E	TF binding site mE1_TFBS_cad
X	17943980	X_17943980_SNP [dm3] X_18049947_SNP [dm6]	T	A	1.406e^-4	0.667	INTRON Sh
2L	6826820	2L_6826820_SNP [dm3] 2L_6826820_SNP [dm6]	G	A	1.408e^-4	0.667	INTRON sens-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	9453218	X_9453218_SNP [dm3] X_9559185_SNP [dm6]	A	G	1.409e^-4	0.667	SYNONYMOUS_CODING Cubn UPSTREAM CR42767	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12528943	3L_12528943_SNP [dm3] 3L_12535843_SNP [dm6]	C	G	1.412e^-4	0.667	NON_SYNONYMOUS_CODING CG4069 DOWNSTREAM CG10688	TF binding site mE1_TFBS_cad
X	17946793	X_17946793_SNP [dm3] X_18052760_SNP [dm6]	T	C	1.416e^-4	0.667	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17946806	X_17946806_SNP [dm3] X_18052773_SNP [dm6]	T	G	1.416e^-4	0.667	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17947646	X_17947646_INS [dm3] X_18053613_INS [dm6]	G	GTGTGTATG	1.416e^-4	0.667	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17961001	X_17961001_SNP [dm3] X_18066968_SNP [dm6]	C	T	1.428e^-4	0.667	SYNONYMOUS_CODING Dhc16F
3L	15908004	3L_15908004_DEL [dm3] 3L_15914904_DEL [dm6]	ATCAAAGA	A	1.430e^-4	0.667	INTRON sff
2R	7957648	2R_7957648_SNP [dm3] 2R_12070143_SNP [dm6]	T	C	1.432e^-4	0.667	INTRON CG8888
3L	1789336	3L_1789336_SNP [dm3] 3L_1789336_SNP [dm6]	A	C	1.433e^-4	0.667	DOWNSTREAM dlt INTRON alpha-Spec
2L	7333427	2L_7333427_SNP [dm3] 2L_7333427_SNP [dm6]	A	C	1.434e^-4	0.667	UPSTREAM Wnt6 INTERGENIC
3L	13947661	3L_13947661_SNP [dm3] 3L_13954561_SNP [dm6]	C	A	1.436e^-4	0.667	INTRON CG32137
2L	5522708	2L_5522708_SNP [dm3] 2L_5522708_SNP [dm6]	T	G	1.440e^-4	0.667	INTRON CG7371	TF binding site mE1_TFBS_sens
3R	26669659	3R_26669659_SNP [dm3] 3R_30843937_SNP [dm6]	G	T	1.440e^-4	0.667	INTERGENIC
2R	15080531	2R_15080531_SNP [dm3] 2R_19193026_SNP [dm6]	T	C	1.446e^-4	0.667	INTRON hppy
2L	22579917	2L_22579917_SNP [dm3] 2L_22687185_SNP [dm6]	T	G	1.467e^-4	0.667	INTRON CG40006
2L	13922335	2L_13922335_SNP [dm3] 2L_13922335_SNP [dm6]	G	A	1.469e^-4	0.667	SYNONYMOUS_CODING CG16886 INTRON Ance-3	TF binding site mE1_TFBS_cad
2L	10077044	2L_10077044_SNP [dm3] 2L_10077044_SNP [dm6]	G	A	1.477e^-4	0.667	INTRON CG44153	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16206034	2R_16206034_SNP [dm3] 2R_20318529_SNP [dm6]	A	G	1.479e^-4	0.667	SYNONYMOUS_CODING CG13871 UPSTREAM CG8920	TF binding site mE1_TFBS_cad
3R	21697798	3R_21697798_SNP [dm3] 3R_25872076_SNP [dm6]	G	A	1.490e^-4	0.667	UTR_3_PRIME CG5890 DOWNSTREAM Tsp96F
X	17946761	X_17946761_SNP [dm3] X_18052728_SNP [dm6]	G	A	1.502e^-4	0.667	INTRON Sh	TF binding site BDTNP1_TFBS_dl
3R	19249087	3R_19249087_SNP [dm3] 3R_23423365_SNP [dm6]	T	C	1.508e^-4	0.667	INTRON CG4374	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	19249089	3R_19249089_SNP [dm3] 3R_23423367_SNP [dm6]	G	T	1.508e^-4	0.667	INTRON CG4374	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	19249126	3R_19249126_SNP [dm3] 3R_23423404_SNP [dm6]	A	C	1.508e^-4	0.667	INTRON CG4374	TF binding site mE1_TFBS_HSA
X	2219064	X_2219064_SNP [dm3] X_2325031_SNP [dm6]	G	A	1.510e^-4	0.667	NON_SYNONYMOUS_CODING CG14050 INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	2398858	2R_2398858_DEL [dm3] 2R_6511353_DEL [dm6]	TATTT	C	1.521e^-4	0.667	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
2R	17939057	2R_17939057_SNP [dm3] 2R_22051552_SNP [dm6]	T	G	1.528e^-4	0.667	INTERGENIC
2R	16206214	2R_16206214_SNP [dm3] 2R_20318709_SNP [dm6]	C	T	1.529e^-4	0.667	SYNONYMOUS_CODING CG13871 UPSTREAM CG8920
3R	10225185	3R_10225185_SNP [dm3] 3R_14399463_SNP [dm6]	G	T	1.536e^-4	0.667	INTRON cv-c	TF binding site mE1_TFBS_Trl
2R	1644140	2R_1644140_DEL [dm3] 2R_5756635_DEL [dm6]	TCTCC	T	1.543e^-4	0.667	DOWNSTREAM l_2_09851 INTERGENIC	transposable element FlyBase
2R	7561386	2R_7561386_SNP [dm3] 2R_11673881_SNP [dm6]	C	T	1.552e^-4	0.667	INTRON Roc2 & 1 other
2L	9074778	2L_9074778_SNP [dm3] 2L_9074778_SNP [dm6]	C	T	1.555e^-4	0.667	INTERGENIC
2L	2673454	2L_2673454_SNP [dm3] 2L_2673454_SNP [dm6]	T	A	1.560e^-4	0.667	INTERGENIC
X	7679159	X_7679159_SNP [dm3] X_7785126_SNP [dm6]	C	T	1.561e^-4	0.667	INTERGENIC
3R	17296864	3R_17296864_SNP [dm3] 3R_21471142_SNP [dm6]	T	C	1.563e^-4	0.667	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17578794	X_17578794_SNP [dm3] X_17684761_SNP [dm6]	C	A	1.564e^-4	0.667	INTRON chas
X	18844137	X_18844137_SNP [dm3] X_18950104_SNP [dm6]	C	T	1.570e^-4	0.667	INTRON CG43759
3L	12705356	3L_12705356_SNP [dm3] 3L_12712256_SNP [dm6]	A	G	1.573e^-4	0.667	INTERGENIC
2R	11160770	2R_11160770_SNP [dm3] 2R_15273265_SNP [dm6]	G	A	1.575e^-4	0.667	INTRON Trpm
3R	9776680	3R_9776680_SNP [dm3] 3R_13950958_SNP [dm6]	T	A	1.576e^-4	0.667	NON_SYNONYMOUS_CODING CG9926
2L	2430192	2L_2430192_SNP [dm3] 2L_2430192_SNP [dm6]	A	G	1.576e^-4	0.667	INTRON dpp
2L	4260724	2L_4260724_SNP [dm3] 2L_4260724_SNP [dm6]	G	C	1.579e^-4	0.667	EXON CR44080
3R	10225122	3R_10225122_SNP [dm3] 3R_14399400_SNP [dm6]	C	T	1.580e^-4	0.667	INTRON cv-c
3L	5430613	3L_5430613_SNP [dm3] 3L_5437513_SNP [dm6]	A	G	1.583e^-4	0.667	INTRON CG34391
X	17943996	X_17943996_SNP [dm3] X_18049963_SNP [dm6]	T	G	1.587e^-4	0.667	INTRON Sh
X	17944068	X_17944068_SNP [dm3] X_18050035_SNP [dm6]	A	G	1.587e^-4	0.667	INTRON Sh
X	18859778	X_18859778_SNP [dm3] X_18965745_SNP [dm6]	C	G	1.592e^-4	0.667	INTRON CG43759
3R	22768935	3R_22768935_SNP [dm3] 3R_26943213_SNP [dm6]	T	C	1.594e^-4	0.667	SYNONYMOUS_CODING sda	TF binding site mE1_TFBS_cad
2R	12034584	2R_12034584_SNP [dm3] 2R_16147079_SNP [dm6]	C	T	1.596e^-4	0.667	SYNONYMOUS_CODING Ext2
2R	5102191	2R_5102191_SNP [dm3] 2R_9214686_SNP [dm6]	G	T	1.599e^-4	0.667	DOWNSTREAM CR45309 EXON CR44451
3R	7358458	3R_7358458_DEL [dm3] 3R_11532736_DEL [dm6]	AA	A	1.613e^-4	0.667	DOWNSTREAM dpr4 INTERGENIC
X	17946678	X_17946678_SNP [dm3] X_18052645_SNP [dm6]	G	T	1.614e^-4	0.667	INTRON Sh	TF binding site BDTNP1_TFBS_dl
X	17947626	X_17947626_SNP [dm3] X_18053593_SNP [dm6]	G	A	1.614e^-4	0.667	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17774846	2L_17774846_SNP [dm3] 2L_17774846_SNP [dm6]	G	A	1.615e^-4	0.667	INTRON CadN
3R	14189776	3R_14189776_SNP [dm3] 3R_18364054_SNP [dm6]	A	G	1.627e^-4	0.667	SYNONYMOUS_CODING CG7669 DOWNSTREAM WRNexo
2R	2441317	2R_2441317_SNP [dm3] 2R_6553812_SNP [dm6]	C	T	1.645e^-4	0.667	INTRON jing
3L	1127638	3L_1127638_SNP [dm3] 3L_1127638_SNP [dm6]	T	C	1.646e^-4	0.667	INTERGENIC	regulatory region REDfly_CRMs
3L	1127646	3L_1127646_SNP [dm3] 3L_1127646_SNP [dm6]	C	A	1.646e^-4	0.667	INTERGENIC	regulatory region REDfly_CRMs
2R	13502282	2R_13502282_SNP [dm3] 2R_17614777_SNP [dm6]	A	T	1.647e^-4	0.667	INTRON CG10936	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	6165279	3L_6165279_SNP [dm3] 3L_6172179_SNP [dm6]	G	T	1.647e^-4	0.667	NON_SYNONYMOUS_CODING CG10289	TF binding site mE1_TFBS_cad
3L	6165439	3L_6165439_SNP [dm3] 3L_6172339_SNP [dm6]	A	G	1.647e^-4	0.667	INTRON CG10289	TF binding site mE1_TFBS_cad
3L	6165576	3L_6165576_SNP [dm3] 3L_6172476_SNP [dm6]	G	A	1.647e^-4	0.667	SYNONYMOUS_CODING CG10289	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_sens
2L	3012592	2L_3012592_SNP [dm3] 2L_3012592_SNP [dm6]	T	C	1.655e^-4	0.667	INTRON CG17265	TF binding site mE1_TFBS_inv
3R	11223276	3R_11223276_SNP [dm3] 3R_15397554_SNP [dm6]	C	A	1.665e^-4	0.667	INTRON Rbp	TF binding site BDTNP1_TFBS_dl
2L	7294883	2L_7294883_SNP [dm3] 2L_7294883_SNP [dm6]	C	T	1.668e^-4	0.667	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12874750	2L_12874750_SNP [dm3] 2L_12874750_SNP [dm6]	C	A	1.671e^-4	0.667	INTERGENIC
3R	7891914	3R_7891914_SNP [dm3] 3R_12066192_SNP [dm6]	G	A	1.677e^-4	0.667	INTERGENIC
3L	7437201	3L_7437201_SNP [dm3] 3L_7444101_SNP [dm6]	C	A	1.686e^-4	0.667	INTRON CG42458
2R	12035338	2R_12035338_SNP [dm3] 2R_16147833_SNP [dm6]	A	G	1.689e^-4	0.667	SYNONYMOUS_CODING Ext2 DOWNSTREAM CG10731	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12035347	2R_12035347_SNP [dm3] 2R_16147842_SNP [dm6]	C	T	1.689e^-4	0.667	SYNONYMOUS_CODING Ext2 DOWNSTREAM CG10731	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17948058	X_17948058_SNP [dm3] X_18054025_SNP [dm6]	T	C	1.694e^-4	0.667	INTRON Sh	TF binding site BDTNP1_TFBS_dl
3R	8443809	3R_8443809_SNP [dm3] 3R_12618087_SNP [dm6]	G	T	1.698e^-4	0.667	DOWNSTREAM CR44942 INTERGENIC
X	17618494	X_17618494_SNP [dm3] X_17724461_SNP [dm6]	C	A	1.699e^-4	0.667	INTRON CG42684
2R	14338802	2R_14338802_SNP [dm3] 2R_18451297_SNP [dm6]	C	T	1.703e^-4	0.667	UTR_5_PRIME CG5190 UPSTREAM Prp19	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2L	13271563	2L_13271563_SNP [dm3] 2L_13271563_SNP [dm6]	C	T	1.707e^-4	0.667	SYNONYMOUS_CODING CG44085	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19823166	2R_19823166_INS [dm3] 2R_23935643_INS [dm6]	A	AGCTAA	1.712e^-4	0.667	UTR_5_PRIME Ca-P60A INTRON Ca-P60A
2L	11081131	2L_11081131_SNP [dm3] 2L_11081131_SNP [dm6]	C	A	1.717e^-4	0.667	INTRON AstC
X	17946795	X_17946795_SNP [dm3] X_18052762_SNP [dm6]	A	C	1.725e^-4	0.667	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	22961887	2L_22961887_SNP [dm3] 2L_23069155_SNP [dm6]	G	A	1.734e^-4	0.667	UPSTREAM Spf45 EXON CR43242
2R	11981643	2R_11981643_SNP [dm3] 2R_16094138_SNP [dm6]	C	T	1.742e^-4	0.667	INTRON Dg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8502110	X_8502110_DEL [dm3] X_8608077_DEL [dm6]	GGGC	G	1.744e^-4	0.667	INTERGENIC
2R	15212095	2R_15212095_DEL [dm3] 2R_19324590_DEL [dm6]	CC	C	1.747e^-4	0.667	INTRON Rgk1
X	15451401	X_15451401_INS [dm3] X_15557368_INS [dm6]	A	AA	1.748e^-4	0.667	INTERGENIC
2R	17584746	2R_17584746_SNP [dm3] 2R_21697241_SNP [dm6]	A	G	1.752e^-4	0.667	UPSTREAM CngB DOWNSTREAM HmgZ INTERGENIC
X	17946803	X_17946803_SNP [dm3] X_18052770_SNP [dm6]	A	T	1.755e^-4	0.667	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10690695	2R_10690695_SNP [dm3] 2R_14803190_SNP [dm6]	T	A	1.763e^-4	0.667	INTRON kn	regulatory region REDfly_CRMs
2L	5910407	2L_5910407_SNP [dm3] 2L_5910407_SNP [dm6]	T	C	1.767e^-4	0.667	UPSTREAM CG14000 INTRON bchs	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	1669991	2R_1669991_SNP [dm3] 2R_5782486_SNP [dm6]	T	A	1.772e^-4	0.667	UTR_5_PRIME ZnT41F INTRON ZnT41F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	1670970	2R_1670970_SNP [dm3] 2R_5783465_SNP [dm6]	G	T	1.772e^-4	0.667	UPSTREAM ZnT41F INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	10649228	2R_10649228_SNP [dm3] 2R_14761723_SNP [dm6]	T	C	1.772e^-4	0.667	UTR_3_PRIME Spred
3L	7782986	3L_7782986_SNP [dm3] 3L_7789886_SNP [dm6]	C	T	1.780e^-4	0.667	INTRON CG32369
3L	4631357	3L_4631357_SNP [dm3] 3L_4631357_SNP [dm6]	T	A	1.784e^-4	0.667	INTRON axo
3L	7170424	3L_7170424_SNP [dm3] 3L_7177324_SNP [dm6]	C	T	1.803e^-4	0.667	INTRON Dscam2
3R	8806141	3R_8806141_SNP [dm3] 3R_12980419_SNP [dm6]	A	C	1.804e^-4	0.667	UTR_3_PRIME CG7091 UPSTREAM Paip2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
X	5897160	X_5897160_SNP [dm3] X_6003127_SNP [dm6]	T	G	1.811e^-4	0.667	INTRON CR44498
X	17943503	X_17943503_SNP [dm3] X_18049470_SNP [dm6]	T	A	1.818e^-4	0.667	DOWNSTREAM CG15373 INTRON Sh
2L	7703509	2L_7703509_SNP [dm3] 2L_7703509_SNP [dm6]	T	G	1.821e^-4	0.667	INTRON Tep3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	22910902	2L_22910902_DEL [dm3] 2L_23018170_DEL [dm6]	TT	T	1.826e^-4	0.667	INTRON Cht3
2L	9082154	2L_9082154_SNP [dm3] 2L_9082154_SNP [dm6]	T	C	1.833e^-4	0.667	INTERGENIC
2L	9082175	2L_9082175_SNP [dm3] 2L_9082175_SNP [dm6]	A	C	1.833e^-4	0.667	INTERGENIC
2L	9082683	2L_9082683_SNP [dm3] 2L_9082683_SNP [dm6]	T	C	1.833e^-4	0.667	INTERGENIC
2L	9082716	2L_9082716_SNP [dm3] 2L_9082716_SNP [dm6]	G	T	1.833e^-4	0.667	INTERGENIC
2L	9087467	2L_9087467_SNP [dm3] 2L_9087467_SNP [dm6]	A	T	1.833e^-4	0.667	NON_SYNONYMOUS_CODING Toll-4
2L	9089745	2L_9089745_SNP [dm3] 2L_9089745_SNP [dm6]	A	T	1.833e^-4	0.667	DOWNSTREAM Toll-4 INTERGENIC
X	2733351	X_2733351_SNP [dm3] X_2839318_SNP [dm6]	A	T	1.846e^-4	0.667	INTRON kirre
2L	3645187	2L_3645187_SNP [dm3] 2L_3645187_SNP [dm6]	T	A	1.849e^-4	0.667	INTRON for
3R	23514009	3R_23514009_SNP [dm3] 3R_27688287_SNP [dm6]	C	T	1.861e^-4	0.667	UPSTREAM CG31055 INTRON CG12880	TF binding site mE1_TFBS_chinmo
2R	20195556	2R_20195556_SNP [dm3] 2R_24308033_SNP [dm6]	T	G	1.864e^-4	0.667	INTRON betaTub60D	regulatory region REDfly_CRMs
3L	7754836	3L_7754836_SNP [dm3] 3L_7761736_SNP [dm6]	T	A	1.890e^-4	0.667	SYNONYMOUS_CODING Hn UTR_5_PRIME Hn
2R	8829931	2R_8829931_SNP [dm3] 2R_12942426_SNP [dm6]	T	C	1.896e^-4	0.667	INTRON Mdr49
2R	8829963	2R_8829963_SNP [dm3] 2R_12942458_SNP [dm6]	T	A	1.896e^-4	0.667	INTRON Mdr49
2L	22444858	2L_22444858_SNP [dm3] 2L_22552126_SNP [dm6]	A	C	1.900e^-4	0.667	UTR_3_PRIME CG17493 DOWNSTREAM CG17493
X	20039798	X_20039798_SNP [dm3] X_20145765_SNP [dm6]	T	G	1.900e^-4	0.667	INTERGENIC
2L	12633942	2L_12633942_SNP [dm3] 2L_12633942_SNP [dm6]	T	C	1.912e^-4	0.667	INTRON Ref2	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	8759360	X_8759360_SNP [dm3] X_8865327_SNP [dm6]	T	G	1.923e^-4	0.667	INTRON CG12075	TF binding site mE1_TFBS_kn
3R	20137603	3R_20137603_SNP [dm3] 3R_24311881_SNP [dm6]	G	C	1.924e^-4	0.667	SYNONYMOUS_CODING crb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	19387797	2R_19387797_SNP [dm3] 2R_23500274_SNP [dm6]	T	A	1.925e^-4	0.667	SYNONYMOUS_CODING CG13558	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	781078	2R_781078_SNP [dm3] 2R_4893573_SNP [dm6]	A	C	1.926e^-4	0.667	INTERGENIC	transposable element FlyBase
2L	6189315	2L_6189315_SNP [dm3] 2L_6189315_SNP [dm6]	G	A	1.931e^-4	0.667	INTRON CG34380	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	18859853	X_18859853_SNP [dm3] X_18965820_SNP [dm6]	C	G	1.934e^-4	0.667	INTRON CG43759	TF binding site BDTNP1_TFBS_dl
X	18859870	X_18859870_SNP [dm3] X_18965837_SNP [dm6]	C	A	1.934e^-4	0.667	INTRON CG43759	TF binding site BDTNP1_TFBS_dl
X	18859881	X_18859881_SNP [dm3] X_18965848_SNP [dm6]	A	C	1.934e^-4	0.667	INTRON CG43759	TF binding site BDTNP1_TFBS_dl
X	18859884	X_18859884_DEL [dm3] X_18965851_DEL [dm6]	GGC	AT	1.934e^-4	0.667	INTRON CG43759	TF binding site BDTNP1_TFBS_dl
2L	17092066	2L_17092066_SNP [dm3] 2L_17092066_SNP [dm6]	T	C	1.937e^-4	0.667	INTERGENIC
2L	6469847	2L_6469847_SNP [dm3] 2L_6469847_SNP [dm6]	G	C	1.940e^-4	0.667	SYNONYMOUS_CODING mmy	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11813228	2R_11813228_SNP [dm3] 2R_15925723_SNP [dm6]	T	C	1.943e^-4	0.667	SYNONYMOUS_CODING bdg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	22579936	2L_22579936_SNP [dm3] 2L_22687204_SNP [dm6]	G	T	1.945e^-4	0.667	INTRON CG40006
3R	13259880	3R_13259880_SNP [dm3] 3R_17434158_SNP [dm6]	A	C	1.953e^-4	0.667	INTRON CG5873 & 1 other
2L	7902475	2L_7902475_SNP [dm3] 2L_7902475_SNP [dm6]	C	T	1.957e^-4	0.667	INTRON Snoo
3R	7962301	3R_7962301_SNP [dm3] 3R_12136579_SNP [dm6]	T	C	1.960e^-4	0.667	INTERGENIC
2L	8584512	2L_8584512_SNP [dm3] 2L_8584512_SNP [dm6]	G	T	1.988e^-4	0.667	INTRON Sema-1a
2L	2701445	2L_2701445_SNP [dm3] 2L_2701445_SNP [dm6]	A	G	1.991e^-4	0.667	INTRON CG31690
3L	18849394	3L_18849394_INS [dm3] 3L_18856294_INS [dm6]	T	TT	2.004e^-4	0.667	UPSTREAM CR45388 INTERGENIC
3L	18849400	3L_18849400_SNP [dm3] 3L_18856300_SNP [dm6]	C	T	2.004e^-4	0.667	UPSTREAM CR45388 INTERGENIC
2L	12158482	2L_12158482_DEL [dm3] 2L_12158482_DEL [dm6]	GAACG	G	2.006e^-4	0.667	INTRON CG31760	TF binding site mE1_TFBS_inv
X	13494429	X_13494429_SNP [dm3] X_13600396_SNP [dm6]	A	T	2.021e^-4	0.667	UPSTREAM up INTRON up
2L	7163553	2L_7163553_DEL [dm3] 2L_7163553_DEL [dm6]	TAAAGTGTTTT...	T	2.028e^-4	0.667	INTERGENIC
3R	14175882	3R_14175882_SNP [dm3] 3R_18350160_SNP [dm6]	A	T	2.034e^-4	0.667	INTRON CG15803
3R	14175884	3R_14175884_SNP [dm3] 3R_18350162_SNP [dm6]	G	C	2.034e^-4	0.667	INTRON CG15803
2R	777982	2R_777982_SNP [dm3] 2R_4890477_SNP [dm6]	C	G	2.034e^-4	0.667	INTERGENIC	transposable element FlyBase
2L	13425465	2L_13425465_SNP [dm3] 2L_13425465_SNP [dm6]	G	A	2.037e^-4	0.667	INTRON CG42784
2R	17584740	2R_17584740_SNP [dm3] 2R_21697235_SNP [dm6]	T	A	2.045e^-4	0.667	UPSTREAM CngB DOWNSTREAM HmgZ INTERGENIC
3L	5197134	3L_5197134_SNP [dm3] 3L_5204034_SNP [dm6]	C	G	2.045e^-4	0.667	INTRON shep
2L	9079946	2L_9079946_SNP [dm3] 2L_9079946_SNP [dm6]	C	T	2.050e^-4	0.667	INTERGENIC
2L	9080243	2L_9080243_DEL [dm3] 2L_9080243_DEL [dm6]	AT	A	2.050e^-4	0.667	INTERGENIC
3L	5056602	3L_5056602_SNP [dm3] 3L_5056602_SNP [dm6]	G	A	2.067e^-4	0.667	INTRON Con
3L	5056610	3L_5056610_SNP [dm3] 3L_5056610_SNP [dm6]	C	A	2.067e^-4	0.667	INTRON Con
2L	22438512	2L_22438512_SNP [dm3] 2L_22545780_SNP [dm6]	T	C	2.072e^-4	0.667	INTRON CG17490
3L	11907388	3L_11907388_SNP [dm3] 3L_11914288_SNP [dm6]	C	A	2.074e^-4	0.667	INTRON CG44837
3L	8390484	3L_8390484_SNP [dm3] 3L_8397384_SNP [dm6]	T	C	2.079e^-4	0.667	UPSTREAM CG7120 INTRON CG7120	transposable element FlyBase
X	5362453	X_5362453_SNP [dm3] X_5468420_SNP [dm6]	C	G	2.080e^-4	0.667	INTRON SPR
2L	5913051	2L_5913051_SNP [dm3] 2L_5913051_SNP [dm6]	G	T	2.084e^-4	0.667	SYNONYMOUS_CODING bchs
2L	6842149	2L_6842149_SNP [dm3] 2L_6842149_SNP [dm6]	G	C	2.088e^-4	0.667	INTERGENIC
3L	3995578	3L_3995578_SNP [dm3] 3L_3995578_SNP [dm6]	A	G	2.092e^-4	0.667	INTERGENIC
3R	26488902	3R_26488902_SNP [dm3] 3R_30663180_SNP [dm6]	T	A	2.093e^-4	0.667	INTERGENIC
2L	9982510	2L_9982510_SNP [dm3] 2L_9982510_SNP [dm6]	C	T	2.107e^-4	0.667	INTERGENIC	regulatory region REDfly_CRMs
X	11320891	X_11320891_SNP [dm3] X_11426858_SNP [dm6]	A	G	2.111e^-4	0.667	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	2701078	2R_2701078_SNP [dm3] 2R_6813573_SNP [dm6]	T	G	2.112e^-4	0.667	NON_SYNONYMOUS_CODING koi	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2103403	3L_2103403_SNP [dm3] 3L_2103403_SNP [dm6]	G	T	2.115e^-4	0.667	INTRON sls	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	5637402	2L_5637402_SNP [dm3] 2L_5637402_SNP [dm6]	G	A	2.115e^-4	0.667	INTRON CG31646
2L	9092573	2L_9092573_SNP [dm3] 2L_9092573_SNP [dm6]	C	T	2.117e^-4	0.667	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
2R	1377272	2R_1377272_SNP [dm3] 2R_5489767_SNP [dm6]	A	T	2.133e^-4	0.667	INTRON CG30440	transposable element FlyBase
2R	10690688	2R_10690688_DEL [dm3] 2R_14803183_DEL [dm6]	GG	G	2.136e^-4	0.667	INTRON kn	regulatory region REDfly_CRMs
2R	6167952	2R_6167952_SNP [dm3] 2R_10280447_SNP [dm6]	C	G	2.141e^-4	0.667	NON_SYNONYMOUS_CODING CAP INTRON CAP	TF binding site mE1_TFBS_chinmo
2R	19309850	2R_19309850_SNP [dm3] 2R_23422327_SNP [dm6]	A	T	2.142e^-4	0.667	INTRON CG9815
2L	886904	2L_886904_SNP [dm3] 2L_886904_SNP [dm6]	C	G	2.153e^-4	0.667	INTERGENIC
2L	4982750	2L_4982750_SNP [dm3] 2L_4982750_SNP [dm6]	A	G	2.157e^-4	0.667	INTRON CG34126
2R	1640813	2R_1640813_DEL [dm3] 2R_5753308_DEL [dm6]	GTTTTGGGTTA...	G	2.160e^-4	0.667	INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
X	18859876	X_18859876_SNP [dm3] X_18965843_SNP [dm6]	T	C	2.165e^-4	0.667	INTRON CG43759	TF binding site BDTNP1_TFBS_dl
3L	19957155	3L_19957155_SNP [dm3] 3L_19964055_SNP [dm6]	T	G	2.165e^-4	0.667	INTRON Ac76E
X	17948108	X_17948108_SNP [dm3] X_18054075_SNP [dm6]	G	A	2.165e^-4	0.667	INTRON Sh	TF binding site BDTNP1_TFBS_dl
X	19369802	X_19369802_SNP [dm3] X_19475769_SNP [dm6]	T	C	2.167e^-4	0.667	SYNONYMOUS_CODING CG12200 INTRON CG32533
3L	3595118	3L_3595118_SNP [dm3] 3L_3595118_SNP [dm6]	G	C	2.169e^-4	0.667	INTRON Eip63E
3L	2229316	3L_2229316_SNP [dm3] 3L_2229316_SNP [dm6]	G	C	2.180e^-4	0.667	UPSTREAM Oseg2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2229322	3L_2229322_SNP [dm3] 3L_2229322_SNP [dm6]	G	A	2.180e^-4	0.667	UPSTREAM Oseg2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11427340	2R_11427340_SNP [dm3] 2R_15539835_SNP [dm6]	A	G	2.181e^-4	0.667	SYNONYMOUS_CODING CG30467 UTR_3_PRIME CG8187	TF binding site mE1_TFBS_HSA
2L	9194264	2L_9194264_SNP [dm3] 2L_9194264_SNP [dm6]	C	G	2.192e^-4	0.667	INTRON tai
2R	8563781	2R_8563781_SNP [dm3] 2R_12676276_SNP [dm6]	G	T	2.204e^-4	0.667	UPSTREAM CG42708 INTRON CG42708	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	7822745	2R_7822745_SNP [dm3] 2R_11935240_SNP [dm6]	A	G	2.205e^-4	0.667	INTERGENIC
2L	22485527	2L_22485527_SNP [dm3] 2L_22592795_SNP [dm6]	T	C	2.209e^-4	0.667	INTERGENIC
2L	22485549	2L_22485549_SNP [dm3] 2L_22592817_SNP [dm6]	C	G	2.209e^-4	0.667	INTERGENIC
2L	22485586	2L_22485586_SNP [dm3] 2L_22592854_SNP [dm6]	G	A	2.209e^-4	0.667	INTERGENIC
2R	17880969	2R_17880969_SNP [dm3] 2R_21993464_SNP [dm6]	T	A	2.211e^-4	0.667	INTRON CG34370
X	9465460	X_9465460_SNP [dm3] X_9571427_SNP [dm6]	C	T	2.234e^-4	0.667	UPSTREAM Cubn DOWNSTREAM CG32699 INTERGENIC
3L	9200940	3L_9200940_SNP [dm3] 3L_9207840_SNP [dm6]	C	T	2.243e^-4	0.667	UTR_5_PRIME Slc45-1 INTRON Slc45-1
2L	10537437	2L_10537437_SNP [dm3] 2L_10537437_SNP [dm6]	C	T	2.247e^-4	0.667	DOWNSTREAM CG18302 INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	3777423	3L_3777423_SNP [dm3] 3L_3777423_SNP [dm6]	A	C	2.247e^-4	0.667	INTRON CG32264
2L	10194670	2L_10194670_SNP [dm3] 2L_10194670_SNP [dm6]	T	A	2.257e^-4	0.667	INTRON Sur
2L	9081833	2L_9081833_SNP [dm3] 2L_9081833_SNP [dm6]	T	A	2.263e^-4	0.667	INTERGENIC
2L	9081908	2L_9081908_SNP [dm3] 2L_9081908_SNP [dm6]	C	A	2.263e^-4	0.667	INTERGENIC
2L	9081915	2L_9081915_INS [dm3] 2L_9081915_INS [dm6]	A	ACATTA	2.263e^-4	0.667	INTERGENIC
2L	9082108	2L_9082108_SNP [dm3] 2L_9082108_SNP [dm6]	C	A	2.263e^-4	0.667	INTERGENIC
2L	9082110	2L_9082110_SNP [dm3] 2L_9082110_SNP [dm6]	A	G	2.263e^-4	0.667	INTERGENIC
2L	9082116	2L_9082116_SNP [dm3] 2L_9082116_SNP [dm6]	C	A	2.263e^-4	0.667	INTERGENIC
2L	9082129	2L_9082129_DEL [dm3] 2L_9082129_DEL [dm6]	GTGAAGG	A	2.263e^-4	0.667	INTERGENIC
2L	9082149	2L_9082149_SNP [dm3] 2L_9082149_SNP [dm6]	C	G	2.263e^-4	0.667	INTERGENIC
2L	9089522	2L_9089522_SNP [dm3] 2L_9089522_SNP [dm6]	C	T	2.263e^-4	0.667	DOWNSTREAM Toll-4 INTERGENIC
2L	9089776	2L_9089776_SNP [dm3] 2L_9089776_SNP [dm6]	T	A	2.263e^-4	0.667	DOWNSTREAM Toll-4 INTERGENIC
2L	9089875	2L_9089875_SNP [dm3] 2L_9089875_SNP [dm6]	T	G	2.263e^-4	0.667	DOWNSTREAM Toll-4 INTERGENIC
2L	9089922	2L_9089922_SNP [dm3] 2L_9089922_SNP [dm6]	T	A	2.263e^-4	0.667	DOWNSTREAM Toll-4 INTERGENIC
2R	18435134	2R_18435134_SNP [dm3] 2R_22547629_SNP [dm6]	C	G	2.263e^-4	0.667	INTRON px
3R	22407727	3R_22407727_SNP [dm3] 3R_26582005_SNP [dm6]	C	T	2.266e^-4	0.667	DOWNSTREAM scrib INTRON scrib
3L	3501532	3L_3501532_DEL [dm3] 3L_3501532_DEL [dm6]	ACGGAAA	A	2.271e^-4	0.667	INTRON CG42324
2R	14586168	2R_14586168_SNP [dm3] 2R_18698663_SNP [dm6]	T	G	2.276e^-4	0.667	INTRON Sik3
3R	19211631	3R_19211631_SNP [dm3] 3R_23385909_SNP [dm6]	A	G	2.284e^-4	0.667	INTERGENIC
2L	3601358	2L_3601358_SNP [dm3] 2L_3601358_SNP [dm6]	T	C	2.285e^-4	0.667	INTERGENIC	TF binding site mE1_TFBS_sens
2L	3800773	2L_3800773_SNP [dm3] 2L_3800773_SNP [dm6]	T	C	2.285e^-4	0.667	SYNONYMOUS_CODING CG3921
2R	16333456	2R_16333456_SNP [dm3] 2R_20445951_SNP [dm6]	G	A	2.287e^-4	0.667	INTRON CG12484	TF binding site mE1_TFBS_inv
2L	22441453	2L_22441453_SNP [dm3] 2L_22548721_SNP [dm6]	T	A	2.292e^-4	0.667	DOWNSTREAM CG17490 INTERGENIC
2L	22452878	2L_22452878_SNP [dm3] 2L_22560146_SNP [dm6]	A	T	2.292e^-4	0.667	INTERGENIC
2L	8782549	2L_8782549_SNP [dm3] 2L_8782549_SNP [dm6]	G	A	2.297e^-4	0.667	UPSTREAM CG42710 INTERGENIC
2R	1910231	2R_1910231_SNP [dm3] 2R_6022726_SNP [dm6]	G	C	2.299e^-4	0.667	NON_SYNONYMOUS_CODING dream	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9776672	3R_9776672_SNP [dm3] 3R_13950950_SNP [dm6]	G	A	2.300e^-4	0.667	SYNONYMOUS_CODING CG9926
3R	14191433	3R_14191433_SNP [dm3] 3R_18365711_SNP [dm6]	T	C	2.303e^-4	0.667	SYNONYMOUS_CODING WRNexo UPSTREAM Nup43	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_Ubx
3R	14191436	3R_14191436_SNP [dm3] 3R_18365714_SNP [dm6]	A	G	2.303e^-4	0.667	SYNONYMOUS_CODING WRNexo UPSTREAM Nup43	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_Ubx
2L	7703202	2L_7703202_SNP [dm3] 2L_7703202_SNP [dm6]	C	T	2.309e^-4	0.667	NON_SYNONYMOUS_CODING Tep3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	8188499	2R_8188499_SNP [dm3] 2R_12300994_SNP [dm6]	C	T	2.311e^-4	0.667	SPLICE_SITE_REGION CG8850 DOWNSTREAM CG42700 INTRON CG8850	TF binding site mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	25729457	3R_25729457_SNP [dm3] 3R_29903735_SNP [dm6]	C	T	2.315e^-4	0.667	NON_SYNONYMOUS_CODING CG15517 DOWNSTREAM CG31038	TF binding site mE1_TFBS_bab1
3L	9189699	3L_9189699_SNP [dm3] 3L_9196599_SNP [dm6]	T	A	2.316e^-4	0.667	INTERGENIC
2L	8412651	2L_8412651_SNP [dm3] 2L_8412651_SNP [dm6]	C	T	2.317e^-4	0.667	UTR_3_PRIME CG13398 UPSTREAM CG13397
2L	6630617	2L_6630617_SNP [dm3] 2L_6630617_SNP [dm6]	G	A	2.346e^-4	0.667	INTRON Oatp26F
2L	6630669	2L_6630669_SNP [dm3] 2L_6630669_SNP [dm6]	C	A	2.346e^-4	0.667	INTRON Oatp26F
2L	6631105	2L_6631105_SNP [dm3] 2L_6631105_SNP [dm6]	C	T	2.346e^-4	0.667	INTRON Oatp26F
2L	22929618	2L_22929618_SNP [dm3] 2L_23036886_SNP [dm6]	C	A	2.347e^-4	0.667	INTERGENIC
3L	10708665	3L_10708665_SNP [dm3] 3L_10715565_SNP [dm6]	G	T	2.347e^-4	0.667	INTERGENIC
2L	7333411	2L_7333411_SNP [dm3] 2L_7333411_SNP [dm6]	G	A	2.350e^-4	0.667	UPSTREAM Wnt6 INTERGENIC
X	9082347	X_9082347_DEL [dm3] X_9188314_DEL [dm6]	AA	A	2.353e^-4	0.667	UTR_3_PRIME mei-P26
2R	12474651	2R_12474651_SNP [dm3] 2R_16587146_SNP [dm6]	G	A	2.359e^-4	0.667	UTR_3_PRIME CG8311 DOWNSTREAM RpLP2	TF binding site BDTNP1_TFBS_dl
2L	8764350	2L_8764350_DEL [dm3] 2L_8764350_DEL [dm6]	AAATA	A	2.363e^-4	0.667	DOWNSTREAM CG9463 INTERGENIC
3L	9426785	3L_9426785_INS [dm3] 3L_9433685_INS [dm6]	T	TT	2.363e^-4	0.667	UTR_3_PRIME CG42526 INTRON MTF-1
2R	1641076	2R_1641076_SNP [dm3] 2R_5753571_SNP [dm6]	T	C	2.370e^-4	0.667	UPSTREAM l_2_09851 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	4677106	3L_4677106_SNP [dm3] 3L_4677106_SNP [dm6]	A	G	2.373e^-4	0.667	UPSTREAM CG34266 INTRON axo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9442328	2L_9442328_INS [dm3] 2L_9442328_INS [dm6]	C	CACTC	2.374e^-4	0.667	INTRON numb
3R	10788835	3R_10788835_SNP [dm3] 3R_14963113_SNP [dm6]	C	A	2.375e^-4	0.667	INTERGENIC
3L	18849434	3L_18849434_SNP [dm3] 3L_18856334_SNP [dm6]	C	T	2.376e^-4	0.667	UPSTREAM CR45388 INTERGENIC
2L	2372869	2L_2372869_SNP [dm3] 2L_2372869_SNP [dm6]	T	G	2.385e^-4	0.667	SYNONYMOUS_CODING CG3609	TF binding site mE1_TFBS_cad
2L	8562167	2L_8562167_SNP [dm3] 2L_8562167_SNP [dm6]	T	A	2.386e^-4	0.667	INTRON Sema-1a
3R	11134127	3R_11134127_SNP [dm3] 3R_15308405_SNP [dm6]	G	T	2.387e^-4	0.667	UTR_3_PRIME Tm1 DOWNSTREAM Tm1
2R	19393157	2R_19393157_SNP [dm3] 2R_23505634_SNP [dm6]	C	G	2.388e^-4	0.667	INTERGENIC
2R	19393160	2R_19393160_SNP [dm3] 2R_23505637_SNP [dm6]	G	A	2.388e^-4	0.667	INTERGENIC
2L	9082602	2L_9082602_SNP [dm3] 2L_9082602_SNP [dm6]	T	A	2.390e^-4	0.667	INTERGENIC
2R	16346765	2R_16346765_SNP [dm3] 2R_20459260_SNP [dm6]	T	A	2.392e^-4	0.667	INTRON CG12484
3L	22355129	3L_22355129_SNP [dm3] 3L_22362029_SNP [dm6]	G	A	2.404e^-4	0.667	INTRON Ten-m	TF binding site mE1_TFBS_HSA
2L	7703518	2L_7703518_SNP [dm3] 2L_7703518_SNP [dm6]	T	C	2.414e^-4	0.667	INTRON Tep3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	13605610	2L_13605610_SNP [dm3] 2L_13605610_SNP [dm6]	G	C	2.418e^-4	0.667	INTRON kuz
2L	22915977	2L_22915977_DEL [dm3] 2L_23023245_DEL [dm6]	GC	G	2.424e^-4	0.667	INTRON Cht3
3R	17020875	3R_17020875_SNP [dm3] 3R_21195153_SNP [dm6]	A	T	2.432e^-4	0.667	INTRON SNF4Agamma
2R	787805	2R_787805_SNP [dm3] 2R_4900300_SNP [dm6]	C	T	2.435e^-4	0.667	INTRON CG44102	transposable element FlyBase
2L	9194231	2L_9194231_SNP [dm3] 2L_9194231_SNP [dm6]	C	G	2.436e^-4	0.667	INTRON tai	transposable element FlyBase
3L	9623419	3L_9623419_INS [dm3] 3L_9630319_INS [dm6]	C	CGAGATTGAGGCC...	2.445e^-4	0.667	INTRON CG8336	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12277787	2R_12277787_INS [dm3] 2R_16390282_INS [dm6]	A	AAACA	2.463e^-4	0.667	INTRON Sema-2b
2L	8984435	2L_8984435_SNP [dm3] 2L_8984435_SNP [dm6]	T	A	2.470e^-4	0.667	INTRON CG13101	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	14978329	2L_14978329_SNP [dm3] 2L_14978329_SNP [dm6]	G	A	2.474e^-4	0.667	INTRON mol
2R	14655615	2R_14655615_SNP [dm3] 2R_18768110_SNP [dm6]	A	C	2.475e^-4	0.667	INTRON Mctp	TF binding site mE1_TFBS_chinmo
2R	9646803	2R_9646803_SNP [dm3] 2R_13759298_SNP [dm6]	T	A	2.483e^-4	0.667	DOWNSTREAM CG6280 INTERGENIC	TF binding site mE1_TFBS_HSA
X	5716480	X_5716480_SNP [dm3] X_5822447_SNP [dm6]	T	C	2.503e^-4	0.667	INTRON CG15765	TF binding site mE1_TFBS_chinmo
2L	9081939	2L_9081939_SNP [dm3] 2L_9081939_SNP [dm6]	T	C	2.506e^-4	0.667	INTERGENIC
2L	9081959	2L_9081959_SNP [dm3] 2L_9081959_SNP [dm6]	T	C	2.506e^-4	0.667	INTERGENIC
X	11164867	X_11164867_SNP [dm3] X_11270834_SNP [dm6]	C	T	2.510e^-4	0.667	INTRON CG44422
2L	10331939	2L_10331939_SNP [dm3] 2L_10331939_SNP [dm6]	G	A	2.529e^-4	0.667	UPSTREAM CG5375 INTRON CG5037	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	9080242	2L_9080242_SNP [dm3] 2L_9080242_SNP [dm6]	C	T	2.534e^-4	0.667	INTERGENIC
3L	9340735	3L_9340735_SNP [dm3] 3L_9347635_SNP [dm6]	A	G	2.536e^-4	0.667	DOWNSTREAM PGRP-LC INTRON PGRP-LC
2R	2754137	2R_2754137_SNP [dm3] 2R_6866632_SNP [dm6]	C	T	2.537e^-4	0.667	INTRON coro
3R	11303667	3R_11303667_SNP [dm3] 3R_15477945_SNP [dm6]	A	T	2.538e^-4	0.667	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	18837820	3R_18837820_SNP [dm3] 3R_23012098_SNP [dm6]	G	A	2.544e^-4	0.667	UPSTREAM CG6688 EXON CR44225	TF binding site mE1_TFBS_cad
3R	18837851	3R_18837851_SNP [dm3] 3R_23012129_SNP [dm6]	C	T	2.544e^-4	0.667	UPSTREAM CG6688 EXON CR44225	TF binding site mE1_TFBS_cad
3R	18838448	3R_18838448_SNP [dm3] 3R_23012726_SNP [dm6]	C	T	2.544e^-4	0.667	UPSTREAM CR44225 INTRON CG6688	TF binding site mE1_TFBS_cad
3L	2100830	3L_2100830_SNP [dm3] 3L_2100830_SNP [dm6]	G	T	2.551e^-4	0.667	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10943292	3L_10943292_SNP [dm3] 3L_10950192_SNP [dm6]	A	C	2.563e^-4	0.667	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2218220	3R_2218220_SNP [dm3] 3R_6392498_SNP [dm6]	A	C	2.575e^-4	0.667	UTR_5_PRIME Dmtn INTRON Dmtn
2R	6917977	2R_6917977_SNP [dm3] 2R_11030472_SNP [dm6]	C	T	2.576e^-4	0.667	INTRON luna
3R	15578887	3R_15578887_SNP [dm3] 3R_19753165_SNP [dm6]	A	G	2.579e^-4	0.667	INTRON GluClalpha
2L	9885414	2L_9885414_SNP [dm3] 2L_9885414_SNP [dm6]	C	A	2.581e^-4	0.667	INTRON nAChRalpha6
2L	9082658	2L_9082658_SNP [dm3] 2L_9082658_SNP [dm6]	T	C	2.581e^-4	0.667	INTERGENIC
3R	19211645	3R_19211645_SNP [dm3] 3R_23385923_SNP [dm6]	A	G	2.582e^-4	0.667	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	17406319	2L_17406319_SNP [dm3] 2L_17406319_SNP [dm6]	A	T	2.583e^-4	0.667	NON_SYNONYMOUS_CODING CLIP-190
2L	16082151	2L_16082151_SNP [dm3] 2L_16082151_SNP [dm6]	G	A	2.585e^-4	0.667	DOWNSTREAM beat-Ia INTERGENIC
X	7679148	X_7679148_SNP [dm3] X_7785115_SNP [dm6]	A	C	2.586e^-4	0.667	INTERGENIC
3R	19302503	3R_19302503_SNP [dm3] 3R_23476781_SNP [dm6]	A	G	2.587e^-4	0.667	INTERGENIC	TF binding site mE1_TFBS_HSA
X	14635348	X_14635348_SNP [dm3] X_14741315_SNP [dm6]	G	T	2.610e^-4	0.667	INTRON NetB	TF binding site BDTNP1_TFBS_twi
2R	1643741	2R_1643741_SNP [dm3] 2R_5756236_SNP [dm6]	T	G	2.627e^-4	0.667	UTR_3_PRIME l_2_09851 DOWNSTREAM l_2_09851
2L	2673319	2L_2673319_SNP [dm3] 2L_2673319_SNP [dm6]	C	T	2.631e^-4	0.667	INTERGENIC
3R	24607874	3R_24607874_SNP [dm3] 3R_28782152_SNP [dm6]	A	G	2.635e^-4	0.667	INTERGENIC
3R	27433239	3R_27433239_SNP [dm3] 3R_31607517_SNP [dm6]	G	C	2.642e^-4	0.667	INTRON CycG	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	14425061	2L_14425061_SNP [dm3] 2L_14425061_SNP [dm6]	A	T	2.657e^-4	0.667	INTRON Cpr35B	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	14085335	2R_14085335_SNP [dm3] 2R_18197830_SNP [dm6]	C	T	2.661e^-4	0.667	INTERGENIC
X	17948362	X_17948362_SNP [dm3] X_18054329_SNP [dm6]	T	A	2.663e^-4	0.667	INTRON Sh
2L	22519876	2L_22519876_SNP [dm3] 2L_22627144_SNP [dm6]	C	T	2.665e^-4	0.667	INTRON CG40006
2L	7901504	2L_7901504_SNP [dm3] 2L_7901504_SNP [dm6]	A	T	2.666e^-4	0.667	INTRON Snoo
X	14635410	X_14635410_SNP [dm3] X_14741377_SNP [dm6]	C	A	2.667e^-4	0.667	INTRON NetB	TF binding site BDTNP1_TFBS_twi
3R	5409615	3R_5409615_SNP [dm3] 3R_9583893_SNP [dm6]	A	G	2.692e^-4	0.667	NON_SYNONYMOUS_CODING CG8301 UPSTREAM CG33654	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	13494427	X_13494427_SNP [dm3] X_13600394_SNP [dm6]	C	T	2.693e^-4	0.667	UPSTREAM up INTRON up
2L	11337397	2L_11337397_SNP [dm3] 2L_11337397_SNP [dm6]	G	T	2.695e^-4	0.667	INTERGENIC
3L	18849966	3L_18849966_SNP [dm3] 3L_18856866_SNP [dm6]	T	A	2.697e^-4	0.667	UPSTREAM CR45388 INTERGENIC
X	18859872	X_18859872_SNP [dm3] X_18965839_SNP [dm6]	T	C	2.698e^-4	0.667	INTRON CG43759	TF binding site BDTNP1_TFBS_dl
2R	11798002	2R_11798002_SNP [dm3] 2R_15910497_SNP [dm6]	G	C	2.709e^-4	0.667	INTRON sli
3R	8416113	3R_8416113_SNP [dm3] 3R_12590391_SNP [dm6]	C	T	2.713e^-4	0.667	INTRON Octbeta2R
2R	2925082	2R_2925082_SNP [dm3] 2R_7037577_SNP [dm6]	A	G	2.714e^-4	0.667	DOWNSTREAM Tsp42Ei INTRON CG33914	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9082765	2L_9082765_SNP [dm3] 2L_9082765_SNP [dm6]	T	A	2.716e^-4	0.667	INTERGENIC
X	17968527	X_17968527_SNP [dm3] X_18074494_SNP [dm6]	C	T	2.720e^-4	0.667	SYNONYMOUS_CODING Dhc16F	TF binding site mE1_TFBS_chinmo
2R	11153466	2R_11153466_SNP [dm3] 2R_15265961_SNP [dm6]	A	T	2.723e^-4	0.667	SYNONYMOUS_CODING Trpm DOWNSTREAM Trpm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2460411	2R_2460411_SNP [dm3] 2R_6572906_SNP [dm6]	A	T	2.723e^-4	0.667	INTRON jing	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18145511	3L_18145511_SNP [dm3] 3L_18152411_SNP [dm6]	C	A	2.726e^-4	0.667	INTRON CG7330
2R	11030572	2R_11030572_SNP [dm3] 2R_15143067_SNP [dm6]	C	A	2.729e^-4	0.667	SYNONYMOUS_CODING chn UTR_3_PRIME chn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	4879291	X_4879291_SNP [dm3] X_4985258_SNP [dm6]	T	G	2.736e^-4	0.667	INTRON CR44833	regulatory region REDfly_CRMs
X	10039926	X_10039926_SNP [dm3] X_10145893_SNP [dm6]	G	A	2.736e^-4	0.667	INTRON CR44894 & 1 other
X	16044743	X_16044743_DEL [dm3] X_16150710_DEL [dm6]	TCTCTCTCT	T	2.752e^-4	0.667	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	10807334	2R_10807334_INS [dm3] 2R_14919829_INS [dm6]	A	AC	2.768e^-4	0.667	INTRON CG10249	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	10807352	2R_10807352_SNP [dm3] 2R_14919847_SNP [dm6]	A	G	2.768e^-4	0.667	INTRON CG10249	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	9671545	2R_9671545_SNP [dm3] 2R_13784040_SNP [dm6]	C	T	2.771e^-4	0.667	INTRON Cpr50Ca EXON CR43810
2R	9671552	2R_9671552_SNP [dm3] 2R_13784047_SNP [dm6]	C	T	2.771e^-4	0.667	INTRON Cpr50Ca EXON CR43810
2L	11506820	2L_11506820_SNP [dm3] 2L_11506820_SNP [dm6]	T	C	2.773e^-4	0.667	NON_SYNONYMOUS_CODING spz4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10116526	3L_10116526_SNP [dm3] 3L_10123426_SNP [dm6]	C	T	2.784e^-4	0.667	INTRON dpr6
3L	634725	3L_634725_SNP [dm3] 3L_634725_SNP [dm6]	T	C	2.784e^-4	0.667	EXON CR43334	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4583459	3R_4583459_SNP [dm3] 3R_8757737_SNP [dm6]	G	A	2.784e^-4	0.667	INTRON CG11768 & 1 other
3R	4583689	3R_4583689_SNP [dm3] 3R_8757967_SNP [dm6]	G	A	2.784e^-4	0.667	INTRON CG11768 & 1 other
2L	9089398	2L_9089398_SNP [dm3] 2L_9089398_SNP [dm6]	C	A	2.787e^-4	0.667	NON_SYNONYMOUS_CODING Toll-4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9093394	2L_9093394_SNP [dm3] 2L_9093394_SNP [dm6]	A	T	2.787e^-4	0.667	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
X	12673659	X_12673659_SNP [dm3] X_12779626_SNP [dm6]	G	T	2.787e^-4	0.667	INTRON CG32647
X	4253089	X_4253089_SNP [dm3] X_4359056_SNP [dm6]	C	T	2.787e^-4	0.667	INTRON norpA
3R	17702948	3R_17702948_SNP [dm3] 3R_21877226_SNP [dm6]	T	C	2.796e^-4	0.667	SYNONYMOUS_CODING CG6656 UPSTREAM P5CDh2 DOWNSTREAM CG34148	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18839552	3R_18839552_SNP [dm3] 3R_23013830_SNP [dm6]	G	C	2.802e^-4	0.667	INTRON CG6688	TF binding site mE1_TFBS_zfh1
3R	18839735	3R_18839735_SNP [dm3] 3R_23014013_SNP [dm6]	A	G	2.802e^-4	0.667	NON_SYNONYMOUS_CODING CG6688
3R	18839845	3R_18839845_DEL [dm3] 3R_23014123_DEL [dm6]	ACACA	TAT	2.802e^-4	0.667	INTRON CG6688	TF binding site mE1_TFBS_chinmo
3R	18839858	3R_18839858_SNP [dm3] 3R_23014136_SNP [dm6]	T	C	2.802e^-4	0.667	INTRON CG6688	TF binding site mE1_TFBS_chinmo
3R	22894703	3R_22894703_SNP [dm3] 3R_27068981_SNP [dm6]	A	G	2.802e^-4	0.667	INTRON spz
2L	9779168	2L_9779168_SNP [dm3] 2L_9779168_SNP [dm6]	A	G	2.810e^-4	0.667	INTERGENIC
2R	14369621	2R_14369621_SNP [dm3] 2R_18482116_SNP [dm6]	C	T	2.818e^-4	0.667	INTRON CG30116
3R	25799162	3R_25799162_SNP [dm3] 3R_29973440_SNP [dm6]	C	T	2.818e^-4	0.667	INTERGENIC
3R	25799207	3R_25799207_SNP [dm3] 3R_29973485_SNP [dm6]	G	A	2.818e^-4	0.667	INTERGENIC
3L	18119005	3L_18119005_SNP [dm3] 3L_18125905_SNP [dm6]	C	A	2.824e^-4	0.667	INTERGENIC
X	4291775	X_4291775_SNP [dm3] X_4397742_SNP [dm6]	C	A	2.827e^-4	0.667	INTRON CR32773
X	4292952	X_4292952_SNP [dm3] X_4398919_SNP [dm6]	T	G	2.827e^-4	0.667	INTRON CR32773
3L	18387167	3L_18387167_SNP [dm3] 3L_18394067_SNP [dm6]	G	T	2.834e^-4	0.667	INTERGENIC	TF binding site mE1_TFBS_cad
3L	9623487	3L_9623487_SNP [dm3] 3L_9630387_SNP [dm6]	A	C	2.836e^-4	0.667	SYNONYMOUS_CODING CG8336	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	11310291	2R_11310291_SNP [dm3] 2R_15422786_SNP [dm6]	C	T	2.846e^-4	0.667	SYNONYMOUS_CODING CG43729 DOWNSTREAM CG30472
2L	16074264	2L_16074264_SNP [dm3] 2L_16074264_SNP [dm6]	G	T	2.846e^-4	0.667	UPSTREAM CR44870 INTRON beat-Ia
3R	19504464	3R_19504464_SNP [dm3] 3R_23678742_SNP [dm6]	A	G	2.851e^-4	0.667	UPSTREAM CG10157 DOWNSTREAM CG13822 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	9082050	2L_9082050_SNP [dm3] 2L_9082050_SNP [dm6]	T	G	2.855e^-4	0.667	INTERGENIC
2L	9089968	2L_9089968_SNP [dm3] 2L_9089968_SNP [dm6]	A	G	2.855e^-4	0.667	DOWNSTREAM Toll-4 INTERGENIC
2R	16206089	2R_16206089_SNP [dm3] 2R_20318584_SNP [dm6]	A	G	2.861e^-4	0.667	NON_SYNONYMOUS_CODING CG13871 UPSTREAM CG8920	TF binding site mE1_TFBS_cad
2L	1018936	2L_1018936_SNP [dm3] 2L_1018936_SNP [dm6]	G	A	2.862e^-4	0.667	INTRON IA-2
2L	13961201	2L_13961201_SNP [dm3] 2L_13961201_SNP [dm6]	T	C	2.863e^-4	0.667	INTRON NimA	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	2793362	X_2793362_SNP [dm3] X_2899329_SNP [dm6]	T	C	2.871e^-4	0.667	INTRON kirre	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	7163669	2L_7163669_SNP [dm3] 2L_7163669_SNP [dm6]	T	C	2.877e^-4	0.667	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	6865130	2L_6865130_SNP [dm3] 2L_6865130_SNP [dm6]	T	G	2.878e^-4	0.667	INTRON Nha1
2L	547786	2L_547786_SNP [dm3] 2L_547786_SNP [dm6]	C	A	2.891e^-4	0.667	SYNONYMOUS_CODING Ets21C DOWNSTREAM nAChRbeta3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10331977	2L_10331977_SNP [dm3] 2L_10331977_SNP [dm6]	T	G	2.895e^-4	0.667	UPSTREAM CG5375 INTRON CG5037	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	16948113	3R_16948113_SNP [dm3] 3R_21122391_SNP [dm6]	G	A	2.898e^-4	0.667	SYNONYMOUS_CODING slmb
3R	12805246	3R_12805246_SNP [dm3] 3R_16979524_SNP [dm6]	C	T	2.900e^-4	0.667	SYNONYMOUS_CODING Ahcy89E
3R	19906138	3R_19906138_MNP [dm3] 3R_24080416_MNP [dm6]	GTG	AGT	2.906e^-4	0.667	INTRON 4EHP
3R	22441802	3R_22441802_DEL [dm3] 3R_26616080_DEL [dm6]	GTC	G	2.908e^-4	0.667	INTERGENIC
3L	13968464	3L_13968464_SNP [dm3] 3L_13975364_SNP [dm6]	G	A	2.912e^-4	0.667	INTRON Hsc70-1
3L	13968470	3L_13968470_SNP [dm3] 3L_13975370_SNP [dm6]	G	C	2.912e^-4	0.667	INTRON Hsc70-1
3L	13968603	3L_13968603_SNP [dm3] 3L_13975503_SNP [dm6]	T	A	2.912e^-4	0.667	INTRON Hsc70-1
3L	13968604	3L_13968604_SNP [dm3] 3L_13975504_SNP [dm6]	T	C	2.912e^-4	0.667	INTRON Hsc70-1
3L	13968615	3L_13968615_SNP [dm3] 3L_13975515_SNP [dm6]	T	C	2.912e^-4	0.667	INTRON Hsc70-1
X	17578808	X_17578808_SNP [dm3] X_17684775_SNP [dm6]	C	T	2.922e^-4	0.667	INTRON chas
2R	17425243	2R_17425243_DEL [dm3] 2R_21537738_DEL [dm6]	TT	T	2.934e^-4	0.667	UPSTREAM CG30286 DOWNSTREAM CG33226 INTRON Egfr & 1 other
2R	17425246	2R_17425246_SNP [dm3] 2R_21537741_SNP [dm6]	G	A	2.934e^-4	0.667	UPSTREAM CG30286 DOWNSTREAM CG33226 INTRON Egfr & 1 other
3R	14175944	3R_14175944_SNP [dm3] 3R_18350222_SNP [dm6]	G	T	2.936e^-4	0.667	INTRON CG15803
3L	7989118	3L_7989118_SNP [dm3] 3L_7996018_SNP [dm6]	C	T	2.943e^-4	0.667	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	16205977	2R_16205977_SNP [dm3] 2R_20318472_SNP [dm6]	A	T	2.948e^-4	0.667	SYNONYMOUS_CODING CG13871 UPSTREAM CG8920	TF binding site mE1_TFBS_cad
2L	14993372	2L_14993372_SNP [dm3] 2L_14993372_SNP [dm6]	T	A	2.949e^-4	0.667	INTRON mol
3R	21689694	3R_21689694_DEL [dm3] 3R_25863972_DEL [dm6]	TTAACT	T	2.950e^-4	0.667	INTRON CG5890
3R	21689705	3R_21689705_DEL [dm3] 3R_25863983_DEL [dm6]	TTTCATTTTAAATT...	T	2.950e^-4	0.667	INTRON CG5890
3R	21693990	3R_21693990_SNP [dm3] 3R_25868268_SNP [dm6]	C	T	2.950e^-4	0.667	INTRON CG5890
2L	22929352	2L_22929352_SNP [dm3] 2L_23036620_SNP [dm6]	G	A	2.952e^-4	0.667	INTERGENIC
2R	7702362	2R_7702362_SNP [dm3] 2R_11814857_SNP [dm6]	G	A	2.952e^-4	0.667	DOWNSTREAM ths INTERGENIC
X	15043341	X_15043341_SNP [dm3] X_15149308_SNP [dm6]	T	G	2.961e^-4	0.667	INTRON CG9095
2R	4921667	2R_4921667_SNP [dm3] 2R_9034162_SNP [dm6]	T	C	2.961e^-4	0.667	INTERGENIC
2L	16362195	2L_16362195_SNP [dm3] 2L_16362195_SNP [dm6]	C	T	2.970e^-4	0.667	INTERGENIC
3L	635197	3L_635197_SNP [dm3] 3L_635197_SNP [dm6]	T	C	2.970e^-4	0.667	EXON CR43334	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18839567	3R_18839567_SNP [dm3] 3R_23013845_SNP [dm6]	C	A	2.973e^-4	0.667	INTRON CG6688	TF binding site mE1_TFBS_zfh1
3R	18839574	3R_18839574_SNP [dm3] 3R_23013852_SNP [dm6]	C	T	2.973e^-4	0.667	INTRON CG6688	TF binding site mE1_TFBS_zfh1
3R	18839581	3R_18839581_SNP [dm3] 3R_23013859_SNP [dm6]	T	C	2.973e^-4	0.667	INTRON CG6688	TF binding site mE1_TFBS_zfh1
3R	18839596	3R_18839596_SNP [dm3] 3R_23013874_SNP [dm6]	T	G	2.973e^-4	0.667	INTRON CG6688	TF binding site mE1_TFBS_zfh1
2R	12339888	2R_12339888_SNP [dm3] 2R_16452383_SNP [dm6]	T	C	2.985e^-4	0.667	INTERGENIC
2R	2743119	2R_2743119_SNP [dm3] 2R_6855614_SNP [dm6]	A	C	2.987e^-4	0.667	INTERGENIC
2L	22477666	2L_22477666_SNP [dm3] 2L_22584934_SNP [dm6]	A	G	2.995e^-4	0.667	NON_SYNONYMOUS_CODING CG17494
3R	8104933	3R_8104933_DEL [dm3] 3R_12279211_DEL [dm6]	CTC	C	2.999e^-4	0.667	INTRON svp	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	6479202	X_6479202_DEL [dm3] X_6585169_DEL [dm6]	CAC	C	3.001e^-4	0.667	UTR_3_PRIME CG34417 INTRON CG34417
2L	12158357	2L_12158357_DEL [dm3] 2L_12158357_DEL [dm6]	AA	A	3.003e^-4	0.667	INTRON CG31760
2L	12158390	2L_12158390_SNP [dm3] 2L_12158390_SNP [dm6]	C	G	3.003e^-4	0.667	INTRON CG31760
X	22155487	X_22155487_SNP [dm3] X_22753651_SNP [dm6]	A	G	3.006e^-4	0.667	INTRON CR44997	transposable element FlyBase
2R	12743573	2R_12743573_INS [dm3] 2R_16856068_INS [dm6]	T	TT	3.007e^-4	0.667	UPSTREAM Dek & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	3326927	3L_3326927_SNP [dm3] 3L_3326927_SNP [dm6]	C	A	3.007e^-4	0.667	UPSTREAM CG11526 INTRON CG11526 & 1 other	TF binding site mE1_TFBS_cnc
2L	17595818	2L_17595818_SNP [dm3] 2L_17595818_SNP [dm6]	A	G	3.010e^-4	0.667	INTRON Sytalpha
2R	781070	2R_781070_SNP [dm3] 2R_4893565_SNP [dm6]	T	G	3.023e^-4	0.667	INTERGENIC	transposable element FlyBase
2L	14106803	2L_14106803_SNP [dm3] 2L_14106803_SNP [dm6]	T	G	3.033e^-4	0.667	DOWNSTREAM CG16879 INTRON CG16879
2L	16170876	2L_16170876_SNP [dm3] 2L_16170876_SNP [dm6]	T	G	3.054e^-4	0.667	NON_SYNONYMOUS_CODING Ca-alpha1D INTRON Ca-alpha1D	TF binding site mE1_TFBS_cad
X	6895275	X_6895275_SNP [dm3] X_7001242_SNP [dm6]	C	T	3.061e^-4	0.667	UTR_3_PRIME Inx2 DOWNSTREAM Inx2 INTRON Inx7 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25440080	3R_25440080_SNP [dm3] 3R_29614358_SNP [dm6]	G	T	3.066e^-4	0.667	INTRON alph
3R	18839793	3R_18839793_SNP [dm3] 3R_23014071_SNP [dm6]	C	A	3.072e^-4	0.667	INTRON CG6688	TF binding site mE1_TFBS_chinmo
2L	10871238	2L_10871238_SNP [dm3] 2L_10871238_SNP [dm6]	C	T	3.073e^-4	0.667	UPSTREAM CR45454 DOWNSTREAM CG12517 & 1 other INTERGENIC
2L	4026980	2L_4026980_SNP [dm3] 2L_4026980_SNP [dm6]	G	A	3.073e^-4	0.667	INTERGENIC
2R	780011	2R_780011_SNP [dm3] 2R_4892506_SNP [dm6]	T	G	3.076e^-4	0.667	INTERGENIC	transposable element FlyBase
X	8511170	X_8511170_SNP [dm3] X_8617137_SNP [dm6]	A	T	3.079e^-4	0.667	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	3766420	3R_3766420_SNP [dm3] 3R_7940698_SNP [dm6]	A	T	3.087e^-4	0.667	INTRON dsx	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14635549	X_14635549_DEL [dm3] X_14741516_DEL [dm6]	GTG	G	3.094e^-4	0.667	INTRON NetB	TF binding site BDTNP1_TFBS_twi
2L	22946316	2L_22946316_SNP [dm3] 2L_23053584_SNP [dm6]	G	A	3.094e^-4	0.667	INTERGENIC
X	14635274	X_14635274_SNP [dm3] X_14741241_SNP [dm6]	G	A	3.096e^-4	0.667	INTRON NetB	TF binding site BDTNP1_TFBS_twi
2R	14086341	2R_14086341_SNP [dm3] 2R_18198836_SNP [dm6]	A	G	3.102e^-4	0.667	INTERGENIC
2L	9093077	2L_9093077_SNP [dm3] 2L_9093077_SNP [dm6]	G	A	3.114e^-4	0.667	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	9985480	2L_9985480_SNP [dm3] 2L_9985480_SNP [dm6]	A	G	3.116e^-4	0.667	UPSTREAM CR13130 INTRON bib	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8564418	2R_8564418_SNP [dm3] 2R_12676913_SNP [dm6]	C	A	3.120e^-4	0.667	UPSTREAM CG42708 INTRON CG42708
3R	8424887	3R_8424887_DEL [dm3] 3R_12599165_DEL [dm6]	CTGGGCCAATGGACAAAGCT...	C	3.120e^-4	0.667	INTERGENIC
2R	5102248	2R_5102248_SNP [dm3] 2R_9214743_SNP [dm6]	T	A	3.122e^-4	0.667	DOWNSTREAM CR45309 EXON CR44451
2R	13074366	2R_13074366_DEL [dm3] 2R_17186861_DEL [dm6]	GGAG	G	3.127e^-4	0.667	DOWNSTREAM CR44388 INTERGENIC
3R	24872376	3R_24872376_SNP [dm3] 3R_29046654_SNP [dm6]	G	A	3.128e^-4	0.667	UTR_3_PRIME Pkc98E
3L	4387574	3L_4387574_SNP [dm3] 3L_4387574_SNP [dm6]	G	C	3.130e^-4	0.667	INTRON slow
2R	12029894	2R_12029894_SNP [dm3] 2R_16142389_SNP [dm6]	G	C	3.140e^-4	0.667	NON_SYNONYMOUS_CODING CG30094 UPSTREAM Aats-cys DOWNSTREAM Got1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	10077040	2L_10077040_SNP [dm3] 2L_10077040_SNP [dm6]	G	A	3.149e^-4	0.667	INTRON CG44153	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3318111	2L_3318111_SNP [dm3] 2L_3318111_SNP [dm6]	T	C	3.153e^-4	0.667	SYNONYMOUS_CODING CG3326 DOWNSTREAM CG3277
X	2876229	X_2876229_SNP [dm3] X_2982196_SNP [dm6]	A	G	3.153e^-4	0.667	INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	3546345	3R_3546345_SNP [dm3] 3R_7720623_SNP [dm6]	T	G	3.156e^-4	0.667	INTRON CR44260
3R	3546353	3R_3546353_SNP [dm3] 3R_7720631_SNP [dm6]	A	T	3.156e^-4	0.667	INTRON CR44260
2R	19448895	2R_19448895_SNP [dm3] 2R_23561372_SNP [dm6]	A	T	3.157e^-4	0.667	INTRON Pi3K59F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	677600	3L_677600_SNP [dm3] 3L_677600_SNP [dm6]	A	G	3.158e^-4	0.667	DOWNSTREAM CG17129 INTERGENIC
3L	2104653	3L_2104653_SNP [dm3] 3L_2104653_SNP [dm6]	A	C	3.160e^-4	0.667	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_chinmo
X	17578802	X_17578802_SNP [dm3] X_17684769_SNP [dm6]	A	C	3.162e^-4	0.667	INTRON chas
X	5897365	X_5897365_DEL [dm3] X_6003332_DEL [dm6]	GCTGGTGAATTGATACTCGA...	G	3.177e^-4	0.667	INTRON CR44498
2R	17883359	2R_17883359_SNP [dm3] 2R_21995854_SNP [dm6]	G	A	3.182e^-4	0.667	INTRON CG34370
2L	9082643	2L_9082643_SNP [dm3] 2L_9082643_SNP [dm6]	T	C	3.182e^-4	0.667	INTERGENIC
2L	22484693	2L_22484693_SNP [dm3] 2L_22591961_SNP [dm6]	C	A	3.184e^-4	0.667	INTERGENIC
2L	4340935	2L_4340935_SNP [dm3] 2L_4340935_SNP [dm6]	C	T	3.198e^-4	0.667	INTRON Atet
3R	13259677	3R_13259677_SNP [dm3] 3R_17433955_SNP [dm6]	G	A	3.199e^-4	0.667	DOWNSTREAM CG44090 INTRON CG5873
2R	17737612	2R_17737612_SNP [dm3] 2R_21850107_SNP [dm6]	C	G	3.200e^-4	0.667	INTERGENIC
3R	12805156	3R_12805156_SNP [dm3] 3R_16979434_SNP [dm6]	T	C	3.207e^-4	0.667	INTRON Ahcy89E
2L	1184278	2L_1184278_SNP [dm3] 2L_1184278_SNP [dm6]	C	T	3.218e^-4	0.667	UPSTREAM CG5126 INTRON Tgt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4191458	2L_4191458_SNP [dm3] 2L_4191458_SNP [dm6]	C	G	3.224e^-4	0.667	INTRON CG3714
3L	18849385	3L_18849385_SNP [dm3] 3L_18856285_SNP [dm6]	T	A	3.233e^-4	0.667	UPSTREAM CR45388 INTERGENIC
X	12136165	X_12136165_SNP [dm3] X_12242132_SNP [dm6]	T	C	3.238e^-4	0.667	INTRON Ten-a
X	12136173	X_12136173_INS [dm3] X_12242140_INS [dm6]	T	TGGTATGCTAGATAACAATT...	3.238e^-4	0.667	INTRON Ten-a
X	12136180	X_12136180_SNP [dm3] X_12242147_SNP [dm6]	T	A	3.238e^-4	0.667	INTRON Ten-a
X	12136186	X_12136186_SNP [dm3] X_12242153_SNP [dm6]	G	T	3.238e^-4	0.667	INTRON Ten-a
2L	16362395	2L_16362395_DEL [dm3] 2L_16362395_DEL [dm6]	ACTAAC	A	3.240e^-4	0.667	INTERGENIC
2L	16362402	2L_16362402_SNP [dm3] 2L_16362402_SNP [dm6]	A	T	3.240e^-4	0.667	INTERGENIC
3L	5823027	3L_5823027_SNP [dm3] 3L_5829927_SNP [dm6]	C	T	3.241e^-4	0.667	INTRON vn
3L	7287994	3L_7287994_INS [dm3] 3L_7294894_INS [dm6]	G	GTTGGCATG	3.253e^-4	0.667	UTR_5_PRIME unc-13-4A
2L	13214996	2L_13214996_SNP [dm3] 2L_13214996_SNP [dm6]	T	C	3.254e^-4	0.667	START_GAINED kek4 UTR_5_PRIME kek4 UPSTREAM snRNA:U2:34ABb INTRON kek4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
2R	9646757	2R_9646757_SNP [dm3] 2R_13759252_SNP [dm6]	A	C	3.267e^-4	0.667	DOWNSTREAM CG6280 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	10174925	2L_10174925_SNP [dm3] 2L_10174925_SNP [dm6]	A	G	3.270e^-4	0.667	DOWNSTREAM CG13137 INTRON CG44153
3L	10943319	3L_10943319_SNP [dm3] 3L_10950219_SNP [dm6]	G	A	3.270e^-4	0.667	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8412941	2L_8412941_SNP [dm3] 2L_8412941_SNP [dm6]	C	T	3.270e^-4	0.667	UTR_3_PRIME CG13398
3R	24820297	3R_24820297_SNP [dm3] 3R_28994575_SNP [dm6]	C	T	3.277e^-4	0.667	INTRON wat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	22870146	2L_22870146_SNP [dm3] 2L_22977414_SNP [dm6]	A	T	3.282e^-4	0.667	INTERGENIC
X	15043152	X_15043152_SNP [dm3] X_15149119_SNP [dm6]	T	C	3.291e^-4	0.667	INTRON CG9095
2R	9400929	2R_9400929_SNP [dm3] 2R_13513424_SNP [dm6]	A	G	3.295e^-4	0.667	UTR_3_PRIME Vmat DOWNSTREAM mip120
X	12271609	X_12271609_SNP [dm3] X_12377576_SNP [dm6]	C	T	3.299e^-4	0.667	SYNONYMOUS_CODING Ir11a
3R	15010576	3R_15010576_SNP [dm3] 3R_19184854_SNP [dm6]	A	T	3.300e^-4	0.667	INTRON CG31475
2R	18784082	2R_18784082_SNP [dm3] 2R_22896559_SNP [dm6]	A	G	3.300e^-4	0.667	UTR_5_PRIME nahoda DOWNSTREAM CG3700 INTRON nahoda	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	26087268	3R_26087268_DEL [dm3] 3R_30261546_DEL [dm6]	CTACTGCCTGGCAT...	C	3.302e^-4	0.667	INTERGENIC
X	19369057	X_19369057_SNP [dm3] X_19475024_SNP [dm6]	C	A	3.320e^-4	0.667	UPSTREAM CG12200 INTRON CG32533	TF binding site mE1_TFBS_inv
X	16711467	X_16711467_SNP [dm3] X_16817434_SNP [dm6]	G	C	3.321e^-4	0.667	INTRON CG4829
3R	26489576	3R_26489576_SNP [dm3] 3R_30663854_SNP [dm6]	T	A	3.323e^-4	0.667	UPSTREAM CR45191 INTERGENIC
X	14635566	X_14635566_SNP [dm3] X_14741533_SNP [dm6]	C	G	3.325e^-4	0.667	INTRON NetB
3R	3545825	3R_3545825_DEL [dm3] 3R_7720103_DEL [dm6]	CGTA	C	3.325e^-4	0.667	EXON CR44260
2L	906474	2L_906474_SNP [dm3] 2L_906474_SNP [dm6]	T	G	3.334e^-4	0.667	INTERGENIC
2L	22438511	2L_22438511_SNP [dm3] 2L_22545779_SNP [dm6]	A	G	3.334e^-4	0.667	INTRON CG17490
2L	8562142	2L_8562142_SNP [dm3] 2L_8562142_SNP [dm6]	T	C	3.337e^-4	0.667	INTRON Sema-1a
X	9449404	X_9449404_INS [dm3] X_9555371_INS [dm6]	A	ACTT	3.341e^-4	0.667	UTR_3_PRIME RpS28b DOWNSTREAM CG15317 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	4292860	X_4292860_SNP [dm3] X_4398827_SNP [dm6]	T	G	3.342e^-4	0.667	INTRON CR32773
3R	21780956	3R_21780956_SNP [dm3] 3R_25955234_SNP [dm6]	G	A	3.348e^-4	0.667	INTRON CCAP-R	TF binding site mE1_TFBS_zfh1
3L	11907468	3L_11907468_DEL [dm3] 3L_11914368_DEL [dm6]	ATGTA	A	3.349e^-4	0.667	INTRON CG44837
2R	7647434	2R_7647434_SNP [dm3] 2R_11759929_SNP [dm6]	T	C	3.363e^-4	0.667	INTRON ths
2L	9235777	2L_9235777_SNP [dm3] 2L_9235777_SNP [dm6]	T	C	3.364e^-4	0.667	DOWNSTREAM tRNA:CR31885 INTRON tai
2L	22446292	2L_22446292_INS [dm3] 2L_22553560_INS [dm6]	T	TAGCT	3.368e^-4	0.667	UTR_3_PRIME CG17493	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	17702930	3R_17702930_SNP [dm3] 3R_21877208_SNP [dm6]	G	A	3.372e^-4	0.667	SYNONYMOUS_CODING CG6656 UPSTREAM P5CDh2 DOWNSTREAM CG34148	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10330734	2R_10330734_SNP [dm3] 2R_14443229_SNP [dm6]	T	A	3.373e^-4	0.667	INTRON Oaz
X	17578810	X_17578810_SNP [dm3] X_17684777_SNP [dm6]	C	T	3.376e^-4	0.667	INTRON chas
X	17578817	X_17578817_SNP [dm3] X_17684784_SNP [dm6]	G	T	3.376e^-4	0.667	INTRON chas
X	17578828	X_17578828_SNP [dm3] X_17684795_SNP [dm6]	G	T	3.376e^-4	0.667	INTRON chas
X	17578833	X_17578833_SNP [dm3] X_17684800_SNP [dm6]	T	A	3.376e^-4	0.667	INTRON chas
X	17578840	X_17578840_SNP [dm3] X_17684807_SNP [dm6]	A	G	3.376e^-4	0.667	INTRON chas
X	17578843	X_17578843_SNP [dm3] X_17684810_SNP [dm6]	T	C	3.376e^-4	0.667	INTRON chas
X	17578858	X_17578858_SNP [dm3] X_17684825_SNP [dm6]	C	T	3.376e^-4	0.667	INTRON chas
X	17578859	X_17578859_SNP [dm3] X_17684826_SNP [dm6]	G	A	3.376e^-4	0.667	INTRON chas
X	17578861	X_17578861_SNP [dm3] X_17684828_SNP [dm6]	G	A	3.376e^-4	0.667	INTRON chas
X	14635446	X_14635446_SNP [dm3] X_14741413_SNP [dm6]	A	G	3.386e^-4	0.667	INTRON NetB	TF binding site BDTNP1_TFBS_twi
2L	8806401	2L_8806401_SNP [dm3] 2L_8806401_SNP [dm6]	G	T	3.390e^-4	0.667	INTERGENIC
3R	11998097	3R_11998097_SNP [dm3] 3R_16172375_SNP [dm6]	G	T	3.400e^-4	0.667	SYNONYMOUS_CODING CG8925 DOWNSTREAM CG6006
3R	5615284	3R_5615284_SNP [dm3] 3R_9789562_SNP [dm6]	G	T	3.404e^-4	0.667	SYNONYMOUS_CODING CG12945 DOWNSTREAM CG8500
2L	15308347	2L_15308347_SNP [dm3] 2L_15308347_SNP [dm6]	A	G	3.405e^-4	0.667	INTERGENIC
2R	11310156	2R_11310156_SNP [dm3] 2R_15422651_SNP [dm6]	A	C	3.411e^-4	0.667	DOWNSTREAM CG30472 INTRON CG43729
2R	21023583	2R_21023583_SNP [dm3] 2R_25136060_SNP [dm6]	G	A	3.414e^-4	0.667	INTRON lov	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25200257	3R_25200257_SNP [dm3] 3R_29374535_SNP [dm6]	G	A	3.415e^-4	0.667	INTERGENIC
2R	3905681	2R_3905681_SNP [dm3] 2R_8018176_SNP [dm6]	C	T	3.434e^-4	0.667	UPSTREAM CR45267 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	7902035	2L_7902035_DEL [dm3] 2L_7902035_DEL [dm6]	CA	C	3.439e^-4	0.667	INTRON Snoo
2L	22466230	2L_22466230_SNP [dm3] 2L_22573498_SNP [dm6]	A	C	3.441e^-4	0.667	INTERGENIC
2L	22466234	2L_22466234_SNP [dm3] 2L_22573502_SNP [dm6]	C	A	3.441e^-4	0.667	INTERGENIC
2L	22466236	2L_22466236_SNP [dm3] 2L_22573504_SNP [dm6]	C	A	3.441e^-4	0.667	INTERGENIC
3L	9200946	3L_9200946_SNP [dm3] 3L_9207846_SNP [dm6]	T	C	3.451e^-4	0.667	START_GAINED Slc45-1 UTR_5_PRIME Slc45-1 INTRON Slc45-1
3R	8806018	3R_8806018_SNP [dm3] 3R_12980296_SNP [dm6]	T	C	3.453e^-4	0.667	NON_SYNONYMOUS_CODING CG7091 UPSTREAM Paip2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
2R	12681017	2R_12681017_SNP [dm3] 2R_16793512_SNP [dm6]	A	G	3.458e^-4	0.667	SYNONYMOUS_CODING CG15615 DOWNSTREAM CG15919
2R	5259293	2R_5259293_SNP [dm3] 2R_9371788_SNP [dm6]	A	T	3.465e^-4	0.667	INTRON CG13954	TF binding site mE1_TFBS_cad
2L	22277381	2L_22277381_SNP [dm3] 2L_22277381_SNP [dm6]	T	G	3.467e^-4	0.667	INTERGENIC	transposable element FlyBase
2L	10352012	2L_10352012_SNP [dm3] 2L_10352012_SNP [dm6]	A	C	3.469e^-4	0.667	SYNONYMOUS_CODING CG34367
2L	9074812	2L_9074812_SNP [dm3] 2L_9074812_SNP [dm6]	T	G	3.470e^-4	0.667	INTERGENIC
3R	14176376	3R_14176376_SNP [dm3] 3R_18350654_SNP [dm6]	G	A	3.471e^-4	0.667	INTRON CG15803
3R	14176379	3R_14176379_DEL [dm3] 3R_18350657_DEL [dm6]	TT	T	3.471e^-4	0.667	INTRON CG15803
2R	4921443	2R_4921443_SNP [dm3] 2R_9033938_SNP [dm6]	C	T	3.474e^-4	0.667	INTERGENIC
3R	25603451	3R_25603451_SNP [dm3] 3R_29777729_SNP [dm6]	A	G	3.474e^-4	0.667	INTRON kay	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	15846556	2L_15846556_SNP [dm3] 2L_15846556_SNP [dm6]	G	A	3.484e^-4	0.667	UPSTREAM CR43763 INTERGENIC
2L	9089593	2L_9089593_SNP [dm3] 2L_9089593_SNP [dm6]	C	T	3.496e^-4	0.667	DOWNSTREAM Toll-4 INTERGENIC
2R	4921670	2R_4921670_SNP [dm3] 2R_9034165_SNP [dm6]	T	G	3.499e^-4	0.667	INTERGENIC
2R	6864316	2R_6864316_SNP [dm3] 2R_10976811_SNP [dm6]	G	C	3.503e^-4	0.667	INTERGENIC
X	4792339	X_4792339_SNP [dm3] X_4898306_SNP [dm6]	G	A	3.503e^-4	0.667	INTRON CG42594
X	4792341	X_4792341_INS [dm3] X_4898308_INS [dm6]	G	GT	3.503e^-4	0.667	INTRON CG42594
X	4792344	X_4792344_DEL [dm3] X_4898311_DEL [dm6]	CAGTATTAAGTAT...	C	3.503e^-4	0.667	INTRON CG42594
X	4792381	X_4792381_SNP [dm3] X_4898348_SNP [dm6]	A	G	3.503e^-4	0.667	INTRON CG42594
2L	12250786	2L_12250786_SNP [dm3] 2L_12250786_SNP [dm6]	T	C	3.507e^-4	0.667	INTRON aret
2L	10332556	2L_10332556_SNP [dm3] 2L_10332556_SNP [dm6]	T	C	3.519e^-4	0.667	SYNONYMOUS_CODING CG5037	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9985240	2L_9985240_INS [dm3] 2L_9985240_INS [dm6]	C	CGAAAACTTAACATTTACAA...	3.546e^-4	0.667	UPSTREAM CR13130 INTRON bib	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17880964	2R_17880964_SNP [dm3] 2R_21993459_SNP [dm6]	C	A	3.551e^-4	0.667	INTRON CG34370
2R	17880965	2R_17880965_SNP [dm3] 2R_21993460_SNP [dm6]	C	T	3.551e^-4	0.667	INTRON CG34370
3L	7170418	3L_7170418_SNP [dm3] 3L_7177318_SNP [dm6]	A	T	3.558e^-4	0.667	INTRON Dscam2
2L	9082569	2L_9082569_SNP [dm3] 2L_9082569_SNP [dm6]	T	A	3.562e^-4	0.667	INTERGENIC
2R	18435163	2R_18435163_SNP [dm3] 2R_22547658_SNP [dm6]	G	A	3.563e^-4	0.667	INTRON px
3R	8429281	3R_8429281_DEL [dm3] 3R_12603559_DEL [dm6]	ATACAATATCTTGGTGTGGA...	A	3.568e^-4	0.667	INTERGENIC
2R	10972484	2R_10972484_SNP [dm3] 2R_15084979_SNP [dm6]	T	C	3.568e^-4	0.667	INTERGENIC
X	17947655	X_17947655_SNP [dm3] X_18053622_SNP [dm6]	T	C	3.573e^-4	0.667	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10680449	2L_10680449_SNP [dm3] 2L_10680449_SNP [dm6]	T	G	3.573e^-4	0.667	UPSTREAM CG17105 DOWNSTREAM CG17104 EXON CR44180
2L	17590153	2L_17590153_SNP [dm3] 2L_17590153_SNP [dm6]	C	T	3.575e^-4	0.667	UTR_5_PRIME Oli UPSTREAM CR44410 INTRON Oli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
3R	8442539	3R_8442539_SNP [dm3] 3R_12616817_SNP [dm6]	C	T	3.577e^-4	0.667	INTERGENIC
3R	5597411	3R_5597411_SNP [dm3] 3R_9771689_SNP [dm6]	C	T	3.581e^-4	0.667	UPSTREAM CG9471 DOWNSTREAM Whamy INTERGENIC
3R	16267525	3R_16267525_SNP [dm3] 3R_20441803_SNP [dm6]	G	T	3.584e^-4	0.667	INTRON Gfrl
3L	3325683	3L_3325683_SNP [dm3] 3L_3325683_SNP [dm6]	G	A	3.597e^-4	0.667	UTR_5_PRIME CG11526 UPSTREAM PHGPx INTRON CG11526	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3325952	3L_3325952_SNP [dm3] 3L_3325952_SNP [dm6]	G	T	3.597e^-4	0.667	UTR_5_PRIME CG11526 UPSTREAM PHGPx & 1 other INTRON CG11526	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3326109	3L_3326109_SNP [dm3] 3L_3326109_SNP [dm6]	C	T	3.597e^-4	0.667	UPSTREAM PHGPx & 1 other INTRON CG11526	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16413559	2R_16413559_SNP [dm3] 2R_20526054_SNP [dm6]	T	C	3.598e^-4	0.667	UPSTREAM CG13422 DOWNSTREAM CR44650 INTERGENIC
X	7196657	X_7196657_SNP [dm3] X_7302624_SNP [dm6]	G	A	3.598e^-4	0.667	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	1292706	3L_1292706_SNP [dm3] 3L_1292706_SNP [dm6]	T	A	3.601e^-4	0.667	SYNONYMOUS_CODING CG32333
2R	13978807	2R_13978807_SNP [dm3] 2R_18091302_SNP [dm6]	C	T	3.615e^-4	0.667	INTRON CG34386	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	13978873	2R_13978873_SNP [dm3] 2R_18091368_SNP [dm6]	A	T	3.615e^-4	0.667	INTRON CG34386	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	13978892	2R_13978892_SNP [dm3] 2R_18091387_SNP [dm6]	T	A	3.615e^-4	0.667	INTRON CG34386	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	8398294	2L_8398294_SNP [dm3] 2L_8398294_SNP [dm6]	T	A	3.629e^-4	0.667	UPSTREAM CG13386 DOWNSTREAM CG13385 INTERGENIC
2L	6829419	2L_6829419_SNP [dm3] 2L_6829419_SNP [dm6]	A	G	3.631e^-4	0.667	INTRON sens-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	2798608	2L_2798608_DEL [dm3] 2L_2798608_DEL [dm6]	TA	T	3.640e^-4	0.667	UTR_5_PRIME Syt1 DOWNSTREAM CR43821 INTRON Syt1	TF binding site BDTNP1_TFBS_dl
2R	7561111	2R_7561111_SNP [dm3] 2R_11673606_SNP [dm6]	T	C	3.643e^-4	0.667	SYNONYMOUS_CODING Tret1-1 INTRON Roc2	TF binding site BDTNP1_TFBS_da
X	3780249	X_3780249_SNP [dm3] X_3886216_SNP [dm6]	G	C	3.654e^-4	0.667	INTRON CG15239
3L	13163983	3L_13163983_SNP [dm3] 3L_13170883_SNP [dm6]	G	A	3.659e^-4	0.667	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2L	4985447	2L_4985447_SNP [dm3] 2L_4985447_SNP [dm6]	A	G	3.660e^-4	0.667	INTRON CG34126
3L	9626596	3L_9626596_SNP [dm3] 3L_9633496_SNP [dm6]	C	T	3.660e^-4	0.667	SYNONYMOUS_CODING fry	TF binding site mE1_TFBS_cad
2L	22917559	2L_22917559_SNP [dm3] 2L_23024827_SNP [dm6]	A	T	3.664e^-4	0.667	INTRON Cht3
3L	18387308	3L_18387308_SNP [dm3] 3L_18394208_SNP [dm6]	C	T	3.668e^-4	0.667	INTERGENIC	TF binding site mE1_TFBS_cad
2R	11310042	2R_11310042_SNP [dm3] 2R_15422537_SNP [dm6]	A	G	3.668e^-4	0.667	DOWNSTREAM CG30472 INTRON CG43729	TF binding site mE1_TFBS_chinmo
2R	11310052	2R_11310052_SNP [dm3] 2R_15422547_SNP [dm6]	A	G	3.668e^-4	0.667	DOWNSTREAM CG30472 INTRON CG43729	TF binding site mE1_TFBS_chinmo
2L	8584506	2L_8584506_SNP [dm3] 2L_8584506_SNP [dm6]	A	C	3.669e^-4	0.667	INTRON Sema-1a
2R	2754134	2R_2754134_SNP [dm3] 2R_6866629_SNP [dm6]	C	T	3.680e^-4	0.667	INTRON coro
X	7681207	X_7681207_INS [dm3] X_7787174_INS [dm6]	T	TT	3.689e^-4	0.667	INTERGENIC
3L	3595320	3L_3595320_SNP [dm3] 3L_3595320_SNP [dm6]	G	C	3.697e^-4	0.667	INTRON Eip63E
2R	12030353	2R_12030353_SNP [dm3] 2R_16142848_SNP [dm6]	T	A	3.703e^-4	0.667	UTR_3_PRIME CG30094 UPSTREAM Aats-cys DOWNSTREAM Got1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	10063942	2L_10063942_DEL [dm3] 2L_10063942_DEL [dm6]	TGAAT	T	3.706e^-4	0.667	DOWNSTREAM CG44153 & 1 other INTERGENIC
3L	10708619	3L_10708619_SNP [dm3] 3L_10715519_SNP [dm6]	A	T	3.706e^-4	0.667	INTERGENIC
2L	22471560	2L_22471560_SNP [dm3] 2L_22578828_SNP [dm6]	C	T	3.708e^-4	0.667	UPSTREAM CG17494 INTERGENIC	TF binding site mE1_TFBS_zfh1
3R	14631963	3R_14631963_SNP [dm3] 3R_18806241_SNP [dm6]	C	A	3.708e^-4	0.667	SYNONYMOUS_CODING CG18208	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	9779245	2L_9779245_SNP [dm3] 2L_9779245_SNP [dm6]	G	A	3.710e^-4	0.667	INTERGENIC
2L	3009032	2L_3009032_SNP [dm3] 2L_3009032_SNP [dm6]	T	C	3.715e^-4	0.667	INTRON CG17265	TF binding site mE1_TFBS_cnc
2L	12780240	2L_12780240_SNP [dm3] 2L_12780240_SNP [dm6]	C	T	3.726e^-4	0.667	INTERGENIC
2L	12780241	2L_12780241_SNP [dm3] 2L_12780241_SNP [dm6]	T	C	3.726e^-4	0.667	INTERGENIC
3R	24567620	3R_24567620_SNP [dm3] 3R_28741898_SNP [dm6]	T	A	3.729e^-4	0.667	INTRON AstA-R2
3R	24567621	3R_24567621_SNP [dm3] 3R_28741899_SNP [dm6]	G	C	3.729e^-4	0.667	INTRON AstA-R2
3R	24567627	3R_24567627_SNP [dm3] 3R_28741905_SNP [dm6]	C	T	3.729e^-4	0.667	INTRON AstA-R2
X	17943865	X_17943865_SNP [dm3] X_18049832_SNP [dm6]	C	G	3.745e^-4	0.667	INTRON Sh	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	7681239	X_7681239_SNP [dm3] X_7787206_SNP [dm6]	A	G	3.749e^-4	0.667	INTERGENIC
2R	12172614	2R_12172614_SNP [dm3] 2R_16285109_SNP [dm6]	C	T	3.750e^-4	0.667	SYNONYMOUS_CODING CG9068 DOWNSTREAM CR43728	TF binding site mE1_TFBS_sens
2L	4169805	2L_4169805_SNP [dm3] 2L_4169805_SNP [dm6]	C	T	3.751e^-4	0.667	INTERGENIC
2R	8668595	2R_8668595_SNP [dm3] 2R_12781090_SNP [dm6]	A	G	3.751e^-4	0.667	SYNONYMOUS_CODING sca	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	13857327	2R_13857327_SNP [dm3] 2R_17969822_SNP [dm6]	T	C	3.752e^-4	0.667	INTERGENIC
3R	15993520	3R_15993520_SNP [dm3] 3R_20167798_SNP [dm6]	A	T	3.760e^-4	0.667	INTERGENIC
3L	12632003	3L_12632003_SNP [dm3] 3L_12638903_SNP [dm6]	T	A	3.763e^-4	0.667	INTRON CR32111
2L	6860969	2L_6860969_SNP [dm3] 2L_6860969_SNP [dm6]	G	T	3.770e^-4	0.667	UTR_3_PRIME Nha1 DOWNSTREAM l_2_k09022	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19062792	2R_19062792_SNP [dm3] 2R_23175269_SNP [dm6]	C	T	3.778e^-4	0.667	INTRON CG34371	TF binding site BDTNP1_TFBS_da
2R	2951692	2R_2951692_DEL [dm3] 2R_7064187_DEL [dm6]	TTGCAGCCATTTAAT...	T	3.794e^-4	0.667	UPSTREAM Tsp42Er & 1 other INTERGENIC	TF binding site mE1_TFBS_Trl
2R	3304569	2R_3304569_DEL [dm3] 2R_7417064_DEL [dm6]	TCCGGT	T	3.811e^-4	0.667	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	10676094	2R_10676094_SNP [dm3] 2R_14788589_SNP [dm6]	C	G	3.814e^-4	0.667	INTRON kn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	4792322	X_4792322_SNP [dm3] X_4898289_SNP [dm6]	G	C	3.817e^-4	0.667	INTRON CG42594
3L	22592431	3L_22592431_DEL [dm3] 3L_22599331_DEL [dm6]	CCGGTC	C	3.818e^-4	0.667	INTRON CG14459	TF binding site mE1_TFBS_cad
3R	14507646	3R_14507646_SNP [dm3] 3R_18681924_SNP [dm6]	A	C	3.826e^-4	0.667	INTRON CG7708
3L	2105913	3L_2105913_SNP [dm3] 3L_2105913_SNP [dm6]	A	G	3.828e^-4	0.667	SYNONYMOUS_CODING sls	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13352393	3L_13352393_SNP [dm3] 3L_13359293_SNP [dm6]	T	A	3.832e^-4	0.667	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25808904	3R_25808904_SNP [dm3] 3R_29983182_SNP [dm6]	T	A	3.836e^-4	0.667	UPSTREAM CG7896 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	24500545	3R_24500545_SNP [dm3] 3R_28674823_SNP [dm6]	C	G	3.837e^-4	0.667	UPSTREAM CG9990 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	2701446	2L_2701446_SNP [dm3] 2L_2701446_SNP [dm6]	A	C	3.839e^-4	0.667	INTRON CG31690
3R	8431471	3R_8431471_SNP [dm3] 3R_12605749_SNP [dm6]	A	C	3.843e^-4	0.667	INTERGENIC
X	9763292	X_9763292_SNP [dm3] X_9869259_SNP [dm6]	G	A	3.849e^-4	0.667	UPSTREAM CG45060 INTERGENIC
X	9763299	X_9763299_SNP [dm3] X_9869266_SNP [dm6]	T	A	3.849e^-4	0.667	UPSTREAM CG45060 INTERGENIC
X	9763312	X_9763312_SNP [dm3] X_9869279_SNP [dm6]	T	C	3.849e^-4	0.667	UPSTREAM CG45060 INTERGENIC
X	9763318	X_9763318_SNP [dm3] X_9869285_SNP [dm6]	G	T	3.849e^-4	0.667	UPSTREAM CG45060 INTERGENIC
X	9763327	X_9763327_SNP [dm3] X_9869294_SNP [dm6]	G	T	3.849e^-4	0.667	UPSTREAM CG45060 INTERGENIC
2R	19871575	2R_19871575_SNP [dm3] 2R_23984052_SNP [dm6]	C	A	3.873e^-4	0.667	NON_SYNONYMOUS_CODING Sox14	TF binding site mE1_TFBS_chinmo
3R	22410777	3R_22410777_SNP [dm3] 3R_26585055_SNP [dm6]	A	G	3.873e^-4	0.667	SYNONYMOUS_CODING scrib INTRON scrib	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9443609	3R_9443609_SNP [dm3] 3R_13617887_SNP [dm6]	C	T	3.875e^-4	0.667	EXON CR45680
2L	16362394	2L_16362394_SNP [dm3] 2L_16362394_SNP [dm6]	A	C	3.877e^-4	0.667	INTERGENIC
3R	20172781	3R_20172781_INS [dm3] 3R_24347059_INS [dm6]	A	AGA	3.877e^-4	0.667	INTRON CG5746	TF binding site mE1_TFBS_cad
2L	17428609	2L_17428609_SNP [dm3] 2L_17428609_SNP [dm6]	G	A	3.883e^-4	0.667	UPSTREAM Dif INTRON Dif
2L	17428617	2L_17428617_SNP [dm3] 2L_17428617_SNP [dm6]	G	A	3.883e^-4	0.667	UPSTREAM Dif INTRON Dif
2R	781651	2R_781651_DEL [dm3] 2R_4894146_DEL [dm6]	CTTTTGTCGGCGTATGTAAA...	C	3.894e^-4	0.667	INTERGENIC	transposable element FlyBase
3L	12070211	3L_12070211_INS [dm3] 3L_12077111_INS [dm6]	A	AA	3.894e^-4	0.667	INTRON Sema-5c	TF binding site BDTNP1_TFBS_twi
3L	12070219	3L_12070219_SNP [dm3] 3L_12077119_SNP [dm6]	G	T	3.894e^-4	0.667	INTRON Sema-5c	TF binding site BDTNP1_TFBS_twi
X	12266790	X_12266790_SNP [dm3] X_12372757_SNP [dm6]	A	C	3.898e^-4	0.667	UPSTREAM CG2577 INTERGENIC
3R	25758856	3R_25758856_SNP [dm3] 3R_29933134_SNP [dm6]	A	C	3.899e^-4	0.667	UPSTREAM CG42557 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	17969577	X_17969577_SNP [dm3] X_18075544_SNP [dm6]	A	T	3.902e^-4	0.667	INTRON Dhc16F
3L	12600798	3L_12600798_SNP [dm3] 3L_12607698_SNP [dm6]	A	T	3.906e^-4	0.667	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	12600815	3L_12600815_SNP [dm3] 3L_12607715_SNP [dm6]	T	A	3.906e^-4	0.667	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	12600818	3L_12600818_SNP [dm3] 3L_12607718_SNP [dm6]	G	T	3.906e^-4	0.667	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	21904286	3R_21904286_SNP [dm3] 3R_26078564_SNP [dm6]	G	A	3.910e^-4	0.667	NON_SYNONYMOUS_CODING dys	TF binding site mE1_TFBS_cad
3L	7989174	3L_7989174_SNP [dm3] 3L_7996074_SNP [dm6]	T	C	3.915e^-4	0.667	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	8421038	3R_8421038_SNP [dm3] 3R_12595316_SNP [dm6]	C	T	3.922e^-4	0.667	INTRON Octbeta2R	TF binding site mE1_TFBS_chinmo
3L	14475667	3L_14475667_DEL [dm3] 3L_14482567_DEL [dm6]	CC	C	3.945e^-4	0.667	INTRON bbg
3L	4489102	3L_4489102_SNP [dm3] 3L_4489102_SNP [dm6]	G	A	3.957e^-4	0.667	INTRON CG13722
2L	5189154	2L_5189154_SNP [dm3] 2L_5189154_SNP [dm6]	C	T	3.968e^-4	0.667	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_HSA
3L	13352395	3L_13352395_SNP [dm3] 3L_13359295_SNP [dm6]	G	T	3.973e^-4	0.667	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7333256	2L_7333256_SNP [dm3] 2L_7333256_SNP [dm6]	T	A	3.977e^-4	0.667	UPSTREAM Wnt6 INTERGENIC
2L	7907200	2L_7907200_SNP [dm3] 2L_7907200_SNP [dm6]	T	G	3.977e^-4	0.667	INTRON Snoo	TF binding site mE1_TFBS_sbb
2L	10332493	2L_10332493_SNP [dm3] 2L_10332493_SNP [dm6]	G	A	3.981e^-4	0.667	SYNONYMOUS_CODING CG5037	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	11354509	X_11354509_DEL [dm3] X_11460476_DEL [dm6]	TAT	T	3.985e^-4	0.667	INTRON CG43155
2R	5119027	2R_5119027_SNP [dm3] 2R_9231522_SNP [dm6]	A	C	3.990e^-4	0.667	INTRON hig	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	18835879	3R_18835879_SNP [dm3] 3R_23010157_SNP [dm6]	G	A	3.990e^-4	0.667	UPSTREAM CG34375 INTRON CG34375	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16028574	3R_16028574_SNP [dm3] 3R_20202852_SNP [dm6]	A	G	3.991e^-4	0.667	INTERGENIC
2R	9641336	2R_9641336_SNP [dm3] 2R_13753831_SNP [dm6]	A	C	3.991e^-4	0.667	UPSTREAM CG6280 INTERGENIC
3R	18463129	3R_18463129_SNP [dm3] 3R_22637407_SNP [dm6]	A	T	3.995e^-4	0.667	SYNONYMOUS_CODING loco UPSTREAM loco	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26657597	3R_26657597_SNP [dm3] 3R_30831875_SNP [dm6]	A	G	3.995e^-4	0.667	INTRON CG15544
2L	5070813	2L_5070813_SNP [dm3] 2L_5070813_SNP [dm6]	C	A	3.995e^-4	0.667	UPSTREAM RpL37A DOWNSTREAM CR45305 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
2L	5070816	2L_5070816_SNP [dm3] 2L_5070816_SNP [dm6]	C	T	3.995e^-4	0.667	UPSTREAM RpL37A DOWNSTREAM CR45305 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
2L	5070818	2L_5070818_SNP [dm3] 2L_5070818_SNP [dm6]	T	A	3.995e^-4	0.667	UPSTREAM RpL37A DOWNSTREAM CR45305 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
2L	1462166	2L_1462166_SNP [dm3] 2L_1462166_SNP [dm6]	A	T	3.999e^-4	0.667	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	7681146	X_7681146_SNP [dm3] X_7787113_SNP [dm6]	C	T	4.006e^-4	0.667	INTERGENIC
X	7681149	X_7681149_SNP [dm3] X_7787116_SNP [dm6]	G	A	4.006e^-4	0.667	INTERGENIC
3R	4333267	3R_4333267_SNP [dm3] 3R_8507545_SNP [dm6]	G	A	4.012e^-4	0.667	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	4333268	3R_4333268_SNP [dm3] 3R_8507546_SNP [dm6]	G	T	4.012e^-4	0.667	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	12734284	X_12734284_SNP [dm3] X_12840251_SNP [dm6]	A	T	4.015e^-4	0.667	INTRON Pde9
X	2793317	X_2793317_SNP [dm3] X_2899284_SNP [dm6]	G	A	4.017e^-4	0.667	INTRON kirre
3L	3940665	3L_3940665_INS [dm3] 3L_3940665_INS [dm6]	C	CTT	4.020e^-4	0.667	UPSTREAM CG12766 DOWNSTREAM CG10863 EXON CR43916	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	22984769	3R_22984769_SNP [dm3] 3R_27159047_SNP [dm6]	G	A	4.023e^-4	0.667	SYNONYMOUS_CODING grass	TF binding site mE1_TFBS_cad
3L	13968541	3L_13968541_SNP [dm3] 3L_13975441_SNP [dm6]	A	C	4.027e^-4	0.667	INTRON Hsc70-1
3L	13968543	3L_13968543_SNP [dm3] 3L_13975443_SNP [dm6]	G	A	4.027e^-4	0.667	INTRON Hsc70-1
3L	13968566	3L_13968566_SNP [dm3] 3L_13975466_SNP [dm6]	A	G	4.027e^-4	0.667	INTRON Hsc70-1
3L	13968571	3L_13968571_SNP [dm3] 3L_13975471_SNP [dm6]	A	T	4.027e^-4	0.667	INTRON Hsc70-1
3L	13968584	3L_13968584_SNP [dm3] 3L_13975484_SNP [dm6]	A	C	4.027e^-4	0.667	INTRON Hsc70-1
3R	22419035	3R_22419035_SNP [dm3] 3R_26593313_SNP [dm6]	T	A	4.030e^-4	0.667	INTRON scrib
2L	22447343	2L_22447343_SNP [dm3] 2L_22554611_SNP [dm6]	C	T	4.050e^-4	0.667	UTR_3_PRIME CG17493
3L	2120268	3L_2120268_SNP [dm3] 3L_2120268_SNP [dm6]	T	C	4.053e^-4	0.667	INTRON zormin
3R	16054805	3R_16054805_SNP [dm3] 3R_20229083_SNP [dm6]	A	T	4.060e^-4	0.667	INTRON Nlg4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA

Missing results

By genomic position
Variant impact
Gene name

CN_Hobo_TEMP phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results