DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.507e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1567 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	9824945	2L_9824945_SNP [dm3] 2L_9824945_SNP [dm6]	A	G	3.640e^-7	0.661	INTRON nAChRalpha6
2R	12392094	2R_12392094_INS [dm3] 2R_16504589_INS [dm6]	C	CACCCCCCA	9.041e^-6	0.957	INTRON Sema-2a
3R	26963749	3R_26963749_SNP [dm3] 3R_31138027_SNP [dm6]	T	C	1.113e^-5	0.957	INTRON Gycbeta100B
2L	10216987	2L_10216987_SNP [dm3] 2L_10216987_SNP [dm6]	C	T	1.164e^-5	0.957	SYNONYMOUS_CODING Npc1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10091948	2L_10091948_SNP [dm3] 2L_10091948_SNP [dm6]	A	G	1.218e^-5	0.957	SYNONYMOUS_CODING CG13133 INTRON CG44153	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12392088	2R_12392088_SNP [dm3] 2R_16504583_SNP [dm6]	A	C	1.285e^-5	0.957	INTRON Sema-2a
X	4850023	X_4850023_SNP [dm3] X_4955990_SNP [dm6]	C	A	1.473e^-5	0.957	DOWNSTREAM Ptp4E & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_kn
2R	3040600	2R_3040600_SNP [dm3] 2R_7153095_SNP [dm6]	A	T	1.609e^-5	0.957	SYNONYMOUS_CODING Spn43Ab DOWNSTREAM Spn43Ad INTRON pk	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7051350	2L_7051350_SNP [dm3] 2L_7051350_SNP [dm6]	C	T	1.656e^-5	0.957	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2L	10029121	2L_10029121_SNP [dm3] 2L_10029121_SNP [dm6]	C	G	1.664e^-5	0.957	UTR_3_PRIME CG13127
2L	14894113	2L_14894113_SNP [dm3] 2L_14894113_SNP [dm6]	G	C	1.711e^-5	0.957	INTERGENIC
3R	24882287	3R_24882287_SNP [dm3] 3R_29056565_SNP [dm6]	A	T	1.715e^-5	0.957	NON_SYNONYMOUS_CODING Sirt7 DOWNSTREAM CG11843
3R	4585151	3R_4585151_SNP [dm3] 3R_8759429_SNP [dm6]	C	G	1.765e^-5	0.957	INTRON CG11768 & 1 other
2L	8975274	2L_8975274_SNP [dm3] 2L_8975274_SNP [dm6]	T	A	1.776e^-5	0.957	UTR_5_PRIME CG9541 UPSTREAM CG9541	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	2666078	X_2666078_SNP [dm3] X_2772045_SNP [dm6]	G	C	1.906e^-5	0.957	INTRON kirre
X	2284680	X_2284680_SNP [dm3] X_2390647_SNP [dm6]	T	A	1.940e^-5	0.957	INTERGENIC
2L	702221	2L_702221_SNP [dm3] 2L_702221_SNP [dm6]	G	A	2.124e^-5	0.957	INTRON ds	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
X	2399609	X_2399609_SNP [dm3] X_2505576_SNP [dm6]	T	G	2.225e^-5	0.957	UPSTREAM trol INTRON trol	TF binding site mE1_TFBS_cad
3R	14175778	3R_14175778_DEL [dm3] 3R_18350056_DEL [dm6]	CTAAGTATAT	C	2.283e^-5	0.957	INTRON CG15803
2R	14227947	2R_14227947_SNP [dm3] 2R_18340442_SNP [dm6]	C	G	2.390e^-5	0.957	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18276415	2R_18276415_SNP [dm3] 2R_22388910_SNP [dm6]	G	A	2.543e^-5	0.957	INTRON CG13506
3L	1614702	3L_1614702_SNP [dm3] 3L_1614702_SNP [dm6]	C	T	2.947e^-5	0.957	NON_SYNONYMOUS_CODING CG12105 UPSTREAM CG12105 INTRON CG33791 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26963771	3R_26963771_SNP [dm3] 3R_31138049_SNP [dm6]	A	T	3.042e^-5	0.957	INTRON Gycbeta100B
3L	1188053	3L_1188053_SNP [dm3] 3L_1188053_SNP [dm6]	G	A	3.144e^-5	0.957	INTERGENIC
2L	11166476	2L_11166476_SNP [dm3] 2L_11166476_SNP [dm6]	G	A	3.302e^-5	0.957	INTRON Ca-beta
2L	19789025	2L_19789025_SNP [dm3] 2L_19789025_SNP [dm6]	G	A	3.314e^-5	0.957	INTRON CdGAPr
X	15560909	X_15560909_SNP [dm3] X_15666876_SNP [dm6]	C	T	3.450e^-5	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	15560914	X_15560914_SNP [dm3] X_15666881_SNP [dm6]	T	C	3.450e^-5	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	24881038	3R_24881038_SNP [dm3] 3R_29055316_SNP [dm6]	C	T	3.452e^-5	0.957	NON_SYNONYMOUS_CODING CG11843 UPSTREAM Sirt7	TF binding site BDTNP1_TFBS_dl
3R	24881063	3R_24881063_SNP [dm3] 3R_29055341_SNP [dm6]	G	C	3.452e^-5	0.957	SYNONYMOUS_CODING CG11843 UPSTREAM Sirt7	TF binding site BDTNP1_TFBS_dl
3R	20929533	3R_20929533_SNP [dm3] 3R_25103811_SNP [dm6]	C	T	3.729e^-5	0.957	NON_SYNONYMOUS_CODING CG34027 DOWNSTREAM CG45095
3R	13611718	3R_13611718_SNP [dm3] 3R_17785996_SNP [dm6]	C	T	3.785e^-5	0.957	INTRON CG43102
3R	24880829	3R_24880829_SNP [dm3] 3R_29055107_SNP [dm6]	G	T	3.838e^-5	0.957	NON_SYNONYMOUS_CODING CG11843 UPSTREAM Sirt7	TF binding site BDTNP1_TFBS_dl
3L	12349162	3L_12349162_SNP [dm3] 3L_12356062_SNP [dm6]	G	A	3.933e^-5	0.957	INTERGENIC
3L	11193198	3L_11193198_SNP [dm3] 3L_11200098_SNP [dm6]	A	G	3.989e^-5	0.957	INTRON Plod & 1 other
3L	3633461	3L_3633461_SNP [dm3] 3L_3633461_SNP [dm6]	A	G	4.022e^-5	0.957	INTRON dar1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	1189002	3L_1189002_SNP [dm3] 3L_1189002_SNP [dm6]	G	A	4.159e^-5	0.957	UPSTREAM CG13912 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3L	9509103	3L_9509103_SNP [dm3] 3L_9516003_SNP [dm6]	C	A	4.455e^-5	0.957	INTRON CG33700
3L	4289564	3L_4289564_SNP [dm3] 3L_4289564_SNP [dm6]	T	C	4.476e^-5	0.957	SYNONYMOUS_CODING Hexo1	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	9633603	2L_9633603_SNP [dm3] 2L_9633603_SNP [dm6]	T	A	4.509e^-5	0.957	UPSTREAM Apoltp INTERGENIC
3L	11907388	3L_11907388_SNP [dm3] 3L_11914288_SNP [dm6]	C	A	4.524e^-5	0.957	INTRON CG44837
3R	26963840	3R_26963840_INS [dm3] 3R_31138118_INS [dm6]	A	AA	4.739e^-5	0.957	INTRON Gycbeta100B
3R	26963842	3R_26963842_SNP [dm3] 3R_31138120_SNP [dm6]	G	A	4.739e^-5	0.957	INTRON Gycbeta100B
2L	7903161	2L_7903161_SNP [dm3] 2L_7903161_SNP [dm6]	C	T	4.746e^-5	0.957	INTRON Snoo
2L	7903205	2L_7903205_SNP [dm3] 2L_7903205_SNP [dm6]	T	A	4.746e^-5	0.957	INTRON Snoo
2L	7903434	2L_7903434_SNP [dm3] 2L_7903434_SNP [dm6]	T	C	4.746e^-5	0.957	INTRON Snoo
2L	7904122	2L_7904122_SNP [dm3] 2L_7904122_SNP [dm6]	G	A	4.746e^-5	0.957	INTRON Snoo
2L	7904259	2L_7904259_SNP [dm3] 2L_7904259_SNP [dm6]	C	T	4.746e^-5	0.957	INTRON Snoo
2L	10514949	2L_10514949_SNP [dm3] 2L_10514949_SNP [dm6]	C	T	4.831e^-5	0.957	INTRON Fatp & 1 other
3L	427841	3L_427841_SNP [dm3] 3L_427841_SNP [dm6]	C	T	4.894e^-5	0.957	INTERGENIC
2L	7904690	2L_7904690_SNP [dm3] 2L_7904690_SNP [dm6]	C	G	5.067e^-5	0.957	INTRON Snoo	TF binding site mE1_TFBS_chinmo
2L	19789027	2L_19789027_SNP [dm3] 2L_19789027_SNP [dm6]	T	A	5.070e^-5	0.957	INTRON CdGAPr
2L	19789033	2L_19789033_SNP [dm3] 2L_19789033_SNP [dm6]	A	G	5.070e^-5	0.957	INTRON CdGAPr
2L	1318084	2L_1318084_SNP [dm3] 2L_1318084_SNP [dm6]	C	A	5.099e^-5	0.957	INTERGENIC
2L	1318088	2L_1318088_SNP [dm3] 2L_1318088_SNP [dm6]	G	T	5.099e^-5	0.957	INTERGENIC
2R	11663155	2R_11663155_SNP [dm3] 2R_15775650_SNP [dm6]	G	A	5.132e^-5	0.957	INTRON Zasp52	TF binding site mE1_TFBS_chinmo
2R	14413756	2R_14413756_DEL [dm3] 2R_18526251_DEL [dm6]	ACTATAAATA	A	5.273e^-5	0.957	UTR_3_PRIME CG43066 DOWNSTREAM CG43066
2L	9968121	2L_9968121_SNP [dm3] 2L_9968121_SNP [dm6]	G	A	5.456e^-5	0.957	SYNONYMOUS_CODING RpL13 UPSTREAM Dref	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3R	24883928	3R_24883928_SNP [dm3] 3R_29058206_SNP [dm6]	A	G	5.469e^-5	0.957	NON_SYNONYMOUS_CODING Sirt7	TF binding site mE1_TFBS_sens
3R	14175882	3R_14175882_SNP [dm3] 3R_18350160_SNP [dm6]	A	T	5.515e^-5	0.957	INTRON CG15803
3R	14175884	3R_14175884_SNP [dm3] 3R_18350162_SNP [dm6]	G	C	5.515e^-5	0.957	INTRON CG15803
2R	14531475	2R_14531475_SNP [dm3] 2R_18643970_SNP [dm6]	C	T	5.619e^-5	0.957	INTRON SP2637
2R	9854889	2R_9854889_SNP [dm3] 2R_13967384_SNP [dm6]	T	C	5.644e^-5	0.957	SYNONYMOUS_CODING Cp1 UPSTREAM Aats-phe	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	11843564	X_11843564_SNP [dm3] X_11949531_SNP [dm6]	A	T	5.691e^-5	0.957	INTRON cac	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	3823285	3R_3823285_SNP [dm3] 3R_7997563_SNP [dm6]	C	A	5.920e^-5	0.957	INTERGENIC
3R	3824488	3R_3824488_SNP [dm3] 3R_7998766_SNP [dm6]	C	T	5.920e^-5	0.957	INTERGENIC
2L	7333427	2L_7333427_SNP [dm3] 2L_7333427_SNP [dm6]	A	C	5.929e^-5	0.957	UPSTREAM Wnt6 INTERGENIC
X	5868727	X_5868727_SNP [dm3] X_5974694_SNP [dm6]	G	A	5.944e^-5	0.957	INTRON Grip
2R	6058432	2R_6058432_SNP [dm3] 2R_10170927_SNP [dm6]	A	G	5.958e^-5	0.957	INTRON KCNQ
3L	13204182	3L_13204182_SNP [dm3] 3L_13211082_SNP [dm6]	G	C	6.101e^-5	0.957	UPSTREAM tRNA:CR32129 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19909992	3R_19909992_SNP [dm3] 3R_24084270_SNP [dm6]	G	A	6.233e^-5	0.957	INTRON 4EHP
2L	7906844	2L_7906844_SNP [dm3] 2L_7906844_SNP [dm6]	T	A	6.323e^-5	0.957	INTRON Snoo
2L	7907494	2L_7907494_SNP [dm3] 2L_7907494_SNP [dm6]	T	A	6.323e^-5	0.957	INTRON Snoo	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	2922495	3L_2922495_SNP [dm3] 3L_2922495_SNP [dm6]	T	C	6.324e^-5	0.957	INTRON Shab
2R	13779380	2R_13779380_SNP [dm3] 2R_17891875_SNP [dm6]	A	G	6.342e^-5	0.957	INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	25520527	3R_25520527_SNP [dm3] 3R_29694805_SNP [dm6]	G	T	6.351e^-5	0.957	INTRON dmrt99B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd
2L	11607832	2L_11607832_SNP [dm3] 2L_11607832_SNP [dm6]	C	T	6.448e^-5	0.957	INTRON kek2	TF binding site mE1_TFBS_Ubx
2L	5965903	2L_5965903_SNP [dm3] 2L_5965903_SNP [dm6]	G	A	6.555e^-5	0.957	SYNONYMOUS_CODING CG13992 UPSTREAM psd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8973595	3L_8973595_SNP [dm3] 3L_8980495_SNP [dm6]	T	C	6.615e^-5	0.957	UPSTREAM CG5644 INTERGENIC
3R	26338099	3R_26338099_SNP [dm3] 3R_30512377_SNP [dm6]	T	G	6.642e^-5	0.957	UTR_3_PRIME CG31524 UPSTREAM PH4alphaNE2
2R	14606616	2R_14606616_SNP [dm3] 2R_18719111_SNP [dm6]	G	A	6.649e^-5	0.957	INTRON Hs3st-A
3L	13204177	3L_13204177_SNP [dm3] 3L_13211077_SNP [dm6]	G	T	6.722e^-5	0.957	UPSTREAM tRNA:CR32129 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15273213	2R_15273213_SNP [dm3] 2R_19385708_SNP [dm6]	T	A	6.824e^-5	0.957	UPSTREAM CG10081 DOWNSTREAM CG10073 INTERGENIC
3R	14174865	3R_14174865_SNP [dm3] 3R_18349143_SNP [dm6]	T	C	6.911e^-5	0.957	INTRON CG15803
2L	5965921	2L_5965921_SNP [dm3] 2L_5965921_SNP [dm6]	G	A	6.924e^-5	0.957	SYNONYMOUS_CODING CG13992 UPSTREAM psd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19102584	2R_19102584_SNP [dm3] 2R_23215061_SNP [dm6]	G	A	7.023e^-5	0.957	INTERGENIC
3L	2963716	3L_2963716_INS [dm3] 3L_2963716_INS [dm6]	G	TGCACACTAAAAGA...	7.037e^-5	0.957	UTR_3_PRIME Or63a
3L	16540819	3L_16540819_SNP [dm3] 3L_16547719_SNP [dm6]	G	A	7.062e^-5	0.957	INTERGENIC
3L	15896021	3L_15896021_INS [dm3] 3L_15902921_INS [dm6]	T	TCTT	7.081e^-5	0.957	UTR_3_PRIME sff
X	16410025	X_16410025_SNP [dm3] X_16515992_SNP [dm6]	A	G	7.186e^-5	0.957	INTRON para
X	8878169	X_8878169_SNP [dm3] X_8984136_SNP [dm6]	C	G	7.199e^-5	0.957	SYNONYMOUS_CODING CG12662 INTRON rdgA & 1 other
2L	7906722	2L_7906722_SNP [dm3] 2L_7906722_SNP [dm6]	T	C	7.263e^-5	0.957	INTRON Snoo
3R	24884393	3R_24884393_SNP [dm3] 3R_29058671_SNP [dm6]	A	C	7.352e^-5	0.957	SYNONYMOUS_CODING Sirt7 DOWNSTREAM Cul5
2L	1318102	2L_1318102_SNP [dm3] 2L_1318102_SNP [dm6]	G	T	7.385e^-5	0.957	INTERGENIC
3L	1266401	3L_1266401_SNP [dm3] 3L_1266401_SNP [dm6]	C	T	7.556e^-5	0.957	INTRON CG9134
2L	19290339	2L_19290339_SNP [dm3] 2L_19290339_SNP [dm6]	A	T	7.558e^-5	0.957	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	5463019	2L_5463019_SNP [dm3] 2L_5463019_SNP [dm6]	G	A	7.690e^-5	0.957	INTRON mid
2L	10096892	2L_10096892_SNP [dm3] 2L_10096892_SNP [dm6]	T	C	7.849e^-5	0.957	INTRON CG44153 & 1 other
2R	2035245	2R_2035245_SNP [dm3] 2R_6147740_SNP [dm6]	C	G	7.897e^-5	0.957	INTRON EcR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2035267	2R_2035267_SNP [dm3] 2R_6147762_SNP [dm6]	T	C	7.897e^-5	0.957	INTRON EcR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8024626	3L_8024626_SNP [dm3] 3L_8031526_SNP [dm6]	T	C	7.941e^-5	0.957	INTRON nmo
2R	13042287	2R_13042287_SNP [dm3] 2R_17154782_SNP [dm6]	T	G	8.006e^-5	0.957	INTRON CG17290
X	9504274	X_9504274_SNP [dm3] X_9610241_SNP [dm6]	C	A	8.073e^-5	0.957	SYNONYMOUS_CODING CG42797	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	11843567	X_11843567_SNP [dm3] X_11949534_SNP [dm6]	G	T	8.099e^-5	0.957	INTRON cac	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8412941	2L_8412941_SNP [dm3] 2L_8412941_SNP [dm6]	C	T	8.306e^-5	0.957	UTR_3_PRIME CG13398
3R	14175845	3R_14175845_SNP [dm3] 3R_18350123_SNP [dm6]	T	A	8.338e^-5	0.957	INTRON CG15803
3R	14175846	3R_14175846_SNP [dm3] 3R_18350124_SNP [dm6]	C	A	8.338e^-5	0.957	INTRON CG15803
X	16003668	X_16003668_SNP [dm3] X_16109635_SNP [dm6]	T	C	8.338e^-5	0.957	INTERGENIC
X	2285147	X_2285147_SNP [dm3] X_2391114_SNP [dm6]	G	A	8.343e^-5	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	6232834	2R_6232834_SNP [dm3] 2R_10345329_SNP [dm6]	T	A	8.397e^-5	0.957	INTRON CG42732
3R	14489801	3R_14489801_SNP [dm3] 3R_18664079_SNP [dm6]	G	A	8.512e^-5	0.957	UPSTREAM Cpsf73 INTRON Gos28	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	14490174	3R_14490174_SNP [dm3] 3R_18664452_SNP [dm6]	G	T	8.512e^-5	0.957	UPSTREAM Cpsf73 & 1 other INTRON Gos28
3R	14490184	3R_14490184_INS [dm3] 3R_18664462_INS [dm6]	A	AA	8.512e^-5	0.957	UPSTREAM Cpsf73 & 1 other INTRON Gos28
3R	14490227	3R_14490227_SNP [dm3] 3R_18664505_SNP [dm6]	G	T	8.512e^-5	0.957	UPSTREAM Cpsf73 & 1 other INTRON Gos28	TF binding site mE1_TFBS_cad
3R	14490260	3R_14490260_SNP [dm3] 3R_18664538_SNP [dm6]	C	G	8.512e^-5	0.957	UPSTREAM Cpsf73 & 1 other INTRON Gos28	TF binding site mE1_TFBS_cad
3R	14490268	3R_14490268_SNP [dm3] 3R_18664546_SNP [dm6]	A	G	8.512e^-5	0.957	UPSTREAM Cpsf73 & 1 other INTRON Gos28	TF binding site mE1_TFBS_cad
3R	14048852	3R_14048852_SNP [dm3] 3R_18223130_SNP [dm6]	T	C	8.647e^-5	0.957	SYNONYMOUS_CODING mTerf5 UPSTREAM CG7993	TF binding site mE1_TFBS_sens
3R	14175944	3R_14175944_SNP [dm3] 3R_18350222_SNP [dm6]	G	T	8.675e^-5	0.957	INTRON CG15803
3R	25103909	3R_25103909_SNP [dm3] 3R_29278187_SNP [dm6]	C	T	8.718e^-5	0.957	INTERGENIC	regulatory region REDfly_CRMs
2R	1787502	2R_1787502_SNP [dm3] 2R_5899997_SNP [dm6]	A	G	8.788e^-5	0.957	INTRON CG43366	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	13729664	2L_13729664_SNP [dm3] 2L_13729664_SNP [dm6]	T	C	8.881e^-5	0.957	INTERGENIC
X	5465862	X_5465862_DEL [dm3] X_5571829_DEL [dm6]	GG	G	8.882e^-5	0.957	INTERGENIC
X	13683819	X_13683819_SNP [dm3] X_13789786_SNP [dm6]	A	G	8.925e^-5	0.957	DOWNSTREAM CG10993 INTRON inaE
2L	9936346	2L_9936346_SNP [dm3] 2L_9936346_SNP [dm6]	A	G	8.962e^-5	0.957	UTR_3_PRIME CG31712 UPSTREAM CR45007 INTRON CG31712
2R	19399496	2R_19399496_SNP [dm3] 2R_23511973_SNP [dm6]	A	G	9.124e^-5	0.957	SYNONYMOUS_CODING CG3906	TF binding site mE1_TFBS_cad
2L	14386717	2L_14386717_SNP [dm3] 2L_14386717_SNP [dm6]	A	G	9.209e^-5	0.957	INTERGENIC
3L	1604735	3L_1604735_SNP [dm3] 3L_1604735_SNP [dm6]	C	A	9.248e^-5	0.957	UTR_5_PRIME CG33791 UTR_3_PRIME CG18170
2R	8918039	2R_8918039_SNP [dm3] 2R_13030534_SNP [dm6]	C	T	9.341e^-5	0.957	INTERGENIC
3R	18991357	3R_18991357_SNP [dm3] 3R_23165635_SNP [dm6]	C	T	9.424e^-5	0.957	INTERGENIC
3R	14490179	3R_14490179_SNP [dm3] 3R_18664457_SNP [dm6]	T	C	9.506e^-5	0.957	UPSTREAM Cpsf73 & 1 other INTRON Gos28
3R	14488942	3R_14488942_SNP [dm3] 3R_18663220_SNP [dm6]	G	A	9.571e^-5	0.957	SYNONYMOUS_CODING Cpsf73 UPSTREAM Gos28	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	17207004	3R_17207004_SNP [dm3] 3R_21381282_SNP [dm6]	T	C	9.693e^-5	0.957	INTRON tin	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	7411608	3L_7411608_SNP [dm3] 3L_7418508_SNP [dm6]	T	G	9.871e^-5	0.957	INTERGENIC
2R	9739622	2R_9739622_SNP [dm3] 2R_13852117_SNP [dm6]	T	C	9.917e^-5	0.957	NON_SYNONYMOUS_CODING CG30485 DOWNSTREAM CG6543
3R	14175720	3R_14175720_SNP [dm3] 3R_18349998_SNP [dm6]	T	C	9.932e^-5	0.957	INTRON CG15803
X	22184258	X_22184258_SNP [dm3] X_22782422_SNP [dm6]	C	T	9.990e^-5	0.957	INTRON CR44997
X	15561187	X_15561187_DEL [dm3] X_15667154_DEL [dm6]	CACT	A	1.006e^-4	0.957	DOWNSTREAM CG15646 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	12392099	2R_12392099_SNP [dm3] 2R_16504594_SNP [dm6]	C	A	1.022e^-4	0.957	INTRON Sema-2a
3L	1188054	3L_1188054_SNP [dm3] 3L_1188054_SNP [dm6]	T	C	1.024e^-4	0.957	INTERGENIC
3L	2360841	3L_2360841_SNP [dm3] 3L_2360841_SNP [dm6]	G	A	1.030e^-4	0.957	SYNONYMOUS_CODING CG13801
X	2670566	X_2670566_SNP [dm3] X_2776533_SNP [dm6]	C	T	1.041e^-4	0.957	INTRON kirre
3R	25973021	3R_25973021_SNP [dm3] 3R_30147299_SNP [dm6]	T	C	1.056e^-4	0.957	INTRON AdoR
2R	5877242	2R_5877242_SNP [dm3] 2R_9989737_SNP [dm6]	C	T	1.079e^-4	0.957	UPSTREAM TER94 & 1 other INTRON TER94	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn
2R	7422794	2R_7422794_SNP [dm3] 2R_11535289_SNP [dm6]	G	A	1.082e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14064292	3R_14064292_SNP [dm3] 3R_18238570_SNP [dm6]	G	A	1.084e^-4	0.957	SYNONYMOUS_CODING repo DOWNSTREAM CG7156	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3633278	3L_3633278_SNP [dm3] 3L_3633278_SNP [dm6]	G	T	1.088e^-4	0.957	INTRON dar1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19789032	2L_19789032_SNP [dm3] 2L_19789032_SNP [dm6]	G	A	1.100e^-4	0.957	INTRON CdGAPr
2L	10516131	2L_10516131_SNP [dm3] 2L_10516131_SNP [dm6]	T	A	1.114e^-4	0.957	INTRON Fatp & 1 other	TF binding site BDTNP1_TFBS_dl
2R	17357485	2R_17357485_SNP [dm3] 2R_21469980_SNP [dm6]	C	T	1.122e^-4	0.957	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
X	4467407	X_4467407_INS [dm3] X_4573374_INS [dm6]	G	GATGG	1.125e^-4	0.957	INTRON CR32773
3L	8331303	3L_8331303_SNP [dm3] 3L_8338203_SNP [dm6]	G	A	1.126e^-4	0.957	UTR_3_PRIME Cpr66Cb UPSTREAM Pex2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24879503	3R_24879503_SNP [dm3] 3R_29053781_SNP [dm6]	G	A	1.128e^-4	0.957	UTR_3_PRIME CG11842 UPSTREAM CG11843	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16868262	X_16868262_SNP [dm3] X_16974229_SNP [dm6]	G	A	1.146e^-4	0.957	SYNONYMOUS_CODING CG45002	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	11607792	2L_11607792_SNP [dm3] 2L_11607792_SNP [dm6]	A	G	1.156e^-4	0.957	INTRON kek2	TF binding site mE1_TFBS_Ubx
3L	7070169	3L_7070169_SNP [dm3] 3L_7077069_SNP [dm6]	T	A	1.159e^-4	0.957	INTRON CG8641
2R	12433401	2R_12433401_SNP [dm3] 2R_16545896_SNP [dm6]	C	G	1.164e^-4	0.957	INTERGENIC
2R	12433557	2R_12433557_SNP [dm3] 2R_16546052_SNP [dm6]	C	T	1.170e^-4	0.957	INTERGENIC
2L	8977481	2L_8977481_SNP [dm3] 2L_8977481_SNP [dm6]	C	T	1.172e^-4	0.957	DOWNSTREAM CG13101 INTERGENIC
3R	19909981	3R_19909981_SNP [dm3] 3R_24084259_SNP [dm6]	A	G	1.188e^-4	0.957	INTRON 4EHP
2L	14254987	2L_14254987_SNP [dm3] 2L_14254987_SNP [dm6]	C	G	1.195e^-4	0.957	INTERGENIC
2L	7908374	2L_7908374_SNP [dm3] 2L_7908374_SNP [dm6]	C	T	1.204e^-4	0.957	INTRON Snoo
3L	3633578	3L_3633578_SNP [dm3] 3L_3633578_SNP [dm6]	T	A	1.217e^-4	0.957	INTRON dar1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9886823	2L_9886823_DEL [dm3] 2L_9886823_DEL [dm6]	AATAATATAAGTT...	A	1.217e^-4	0.957	UPSTREAM CR44701 & 1 other INTERGENIC
3R	24820302	3R_24820302_SNP [dm3] 3R_28994580_SNP [dm6]	G	C	1.217e^-4	0.957	INTRON wat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2221290	X_2221290_SNP [dm3] X_2327257_SNP [dm6]	T	C	1.223e^-4	0.957	SYNONYMOUS_CODING CG2854 INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9844195	2L_9844195_SNP [dm3] 2L_9844195_SNP [dm6]	T	G	1.230e^-4	0.957	INTRON nAChRalpha6
2L	7513910	2L_7513910_SNP [dm3] 2L_7513910_SNP [dm6]	G	A	1.234e^-4	0.957	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	5876327	2R_5876327_SNP [dm3] 2R_9988822_SNP [dm6]	T	A	1.250e^-4	0.957	UPSTREAM TER94 EXON CR45324	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	24881240	3R_24881240_SNP [dm3] 3R_29055518_SNP [dm6]	G	C	1.254e^-4	0.957	NON_SYNONYMOUS_CODING CG11843 UPSTREAM Sirt7	TF binding site BDTNP1_TFBS_dl
2R	13042332	2R_13042332_DEL [dm3] 2R_17154827_DEL [dm6]	TT	T	1.260e^-4	0.957	INTRON CG17290
3L	7411606	3L_7411606_SNP [dm3] 3L_7418506_SNP [dm6]	C	A	1.261e^-4	0.957	INTERGENIC
2L	5070794	2L_5070794_SNP [dm3] 2L_5070794_SNP [dm6]	T	C	1.272e^-4	0.957	UPSTREAM RpL37A DOWNSTREAM CR45305 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
2L	5070847	2L_5070847_MNP [dm3] 2L_5070847_MNP [dm6]	ATGA	TATG	1.272e^-4	0.957	UPSTREAM RpL37A DOWNSTREAM CR45305 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
2L	5070861	2L_5070861_SNP [dm3] 2L_5070861_SNP [dm6]	C	A	1.272e^-4	0.957	UPSTREAM RpL37A DOWNSTREAM CR45305 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
2L	10812052	2L_10812052_SNP [dm3] 2L_10812052_SNP [dm6]	C	T	1.272e^-4	0.957	INTRON Nos
3L	13879456	3L_13879456_SNP [dm3] 3L_13886356_SNP [dm6]	C	T	1.275e^-4	0.957	SPLICE_SITE_REGION dysc INTRON dysc	TF binding site mE1_TFBS_cad
2L	12144439	2L_12144439_SNP [dm3] 2L_12144439_SNP [dm6]	G	T	1.277e^-4	0.957	UPSTREAM CG31760 INTRON CG31760
2R	6391784	2R_6391784_SNP [dm3] 2R_10504279_SNP [dm6]	G	A	1.277e^-4	0.957	DOWNSTREAM lola INTRON lola
3R	22366774	3R_22366774_DEL [dm3] 3R_26541052_DEL [dm6]	CTGAGATATGTATAGATGTG...	C	1.282e^-4	0.957	INTRON scrib
3R	14175917	3R_14175917_DEL [dm3] 3R_18350195_DEL [dm6]	ATGGA	A	1.288e^-4	0.957	INTRON CG15803
X	12700591	X_12700591_SNP [dm3] X_12806558_SNP [dm6]	G	A	1.289e^-4	0.957	INTRON Pde9	TF binding site BDTNP1_TFBS_twi
3R	9973092	3R_9973092_SNP [dm3] 3R_14147370_SNP [dm6]	A	T	1.290e^-4	0.957	INTERGENIC
X	14637010	X_14637010_SNP [dm3] X_14742977_SNP [dm6]	A	G	1.292e^-4	0.957	INTRON NetB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	6058427	2R_6058427_SNP [dm3] 2R_10170922_SNP [dm6]	C	T	1.308e^-4	0.957	INTRON KCNQ
2L	14073577	2L_14073577_SNP [dm3] 2L_14073577_SNP [dm6]	T	C	1.316e^-4	0.957	INTRON nAChRalpha5
2R	10249487	2R_10249487_SNP [dm3] 2R_14361982_SNP [dm6]	T	A	1.318e^-4	0.957	UTR_5_PRIME Arc2 UPSTREAM CR10102
3R	16020473	3R_16020473_SNP [dm3] 3R_20194751_SNP [dm6]	A	G	1.319e^-4	0.957	INTERGENIC
3L	14434603	3L_14434603_SNP [dm3] 3L_14441503_SNP [dm6]	T	G	1.332e^-4	0.957	INTRON bbg
3L	1188977	3L_1188977_SNP [dm3] 3L_1188977_SNP [dm6]	G	A	1.333e^-4	0.957	UPSTREAM CG13912 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2R	1345696	2R_1345696_SNP [dm3] 2R_5458191_SNP [dm6]	A	C	1.333e^-4	0.957	INTERGENIC	transposable element FlyBase
2R	9844085	2R_9844085_SNP [dm3] 2R_13956580_SNP [dm6]	T	A	1.335e^-4	0.957	UPSTREAM AGO1 DOWNSTREAM mRpL53 & 1 other INTRON AGO1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	15154207	X_15154207_SNP [dm3] X_15260174_SNP [dm6]	C	T	1.346e^-4	0.957	INTERGENIC
X	15154209	X_15154209_SNP [dm3] X_15260176_SNP [dm6]	A	C	1.346e^-4	0.957	INTERGENIC
X	15154210	X_15154210_SNP [dm3] X_15260177_SNP [dm6]	A	T	1.346e^-4	0.957	INTERGENIC
3L	2963785	3L_2963785_SNP [dm3] 3L_2963785_SNP [dm6]	A	G	1.348e^-4	0.957	UTR_3_PRIME Or63a
3R	25531271	3R_25531271_SNP [dm3] 3R_29705549_SNP [dm6]	C	T	1.365e^-4	0.957	INTERGENIC
3L	7168097	3L_7168097_SNP [dm3] 3L_7174997_SNP [dm6]	C	G	1.366e^-4	0.957	UTR_3_PRIME Dscam2 INTRON Dscam2
3L	7168101	3L_7168101_SNP [dm3] 3L_7175001_SNP [dm6]	C	A	1.366e^-4	0.957	UTR_3_PRIME Dscam2 INTRON Dscam2
3R	16020533	3R_16020533_SNP [dm3] 3R_20194811_SNP [dm6]	T	C	1.384e^-4	0.957	INTERGENIC
3R	17666229	3R_17666229_SNP [dm3] 3R_21840507_SNP [dm6]	C	T	1.393e^-4	0.957	INTERGENIC
3R	24880925	3R_24880925_SNP [dm3] 3R_29055203_SNP [dm6]	G	A	1.402e^-4	0.957	SYNONYMOUS_CODING CG11843 UPSTREAM Sirt7	TF binding site BDTNP1_TFBS_dl
2L	1017953	2L_1017953_SNP [dm3] 2L_1017953_SNP [dm6]	T	C	1.413e^-4	0.957	INTRON IA-2
2L	5993556	2L_5993556_SNP [dm3] 2L_5993556_SNP [dm6]	G	T	1.420e^-4	0.957	SYNONYMOUS_CODING lid	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	5143433	3R_5143433_SNP [dm3] 3R_9317711_SNP [dm6]	C	T	1.426e^-4	0.957	INTRON CG8861
X	1539850	X_1539850_SNP [dm3] X_1645817_SNP [dm6]	C	T	1.428e^-4	0.957	DOWNSTREAM br INTRON Mur2B & 1 other	TF binding site BDTNP1_TFBS_dl
2R	14462492	2R_14462492_SNP [dm3] 2R_18574987_SNP [dm6]	C	T	1.445e^-4	0.957	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7169618	2L_7169618_SNP [dm3] 2L_7169618_SNP [dm6]	G	C	1.467e^-4	0.957	INTERGENIC
X	13983883	X_13983883_SNP [dm3] X_14089850_SNP [dm6]	A	C	1.470e^-4	0.957	INTERGENIC
3R	25520577	3R_25520577_SNP [dm3] 3R_29694855_SNP [dm6]	T	C	1.473e^-4	0.957	INTRON dmrt99B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd
3L	1270024	3L_1270024_SNP [dm3] 3L_1270024_SNP [dm6]	C	T	1.479e^-4	0.957	INTRON CG9134
3R	25295970	3R_25295970_SNP [dm3] 3R_29470248_SNP [dm6]	C	T	1.484e^-4	0.957	INTRON Ptp99A
2R	1667453	2R_1667453_SNP [dm3] 2R_5779948_SNP [dm6]	C	T	1.486e^-4	0.957	INTRON ZnT41F
X	2670556	X_2670556_SNP [dm3] X_2776523_SNP [dm6]	C	T	1.488e^-4	0.957	INTRON kirre
X	13095605	X_13095605_INS [dm3] X_13201572_INS [dm6]	G	GAAAATGGGAG...	1.488e^-4	0.957	FRAME_SHIFT CG44437 INTRON sno	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	7901495	2L_7901495_SNP [dm3] 2L_7901495_SNP [dm6]	A	G	1.503e^-4	0.957	INTRON Snoo
2L	9618172	2L_9618172_SNP [dm3] 2L_9618172_SNP [dm6]	A	T	1.505e^-4	0.957	INTRON GlcAT-S
3R	14490030	3R_14490030_SNP [dm3] 3R_18664308_SNP [dm6]	T	A	1.508e^-4	0.957	UPSTREAM Cpsf73 INTRON Gos28	TF binding site BDTNP1_TFBS_dl
3R	14490058	3R_14490058_SNP [dm3] 3R_18664336_SNP [dm6]	C	T	1.508e^-4	0.957	UPSTREAM Cpsf73 INTRON Gos28
3L	2963732	3L_2963732_SNP [dm3] 3L_2963732_SNP [dm6]	A	G	1.517e^-4	0.957	UTR_3_PRIME Or63a
2R	7424984	2R_7424984_INS [dm3] 2R_11537479_INS [dm6]	T	TT	1.520e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14695811	2L_14695811_SNP [dm3] 2L_14695811_SNP [dm6]	G	C	1.522e^-4	0.957	INTERGENIC
2R	18264509	2R_18264509_SNP [dm3] 2R_22377004_SNP [dm6]	C	T	1.547e^-4	0.957	SYNONYMOUS_CODING Rtf1	TF binding site mE1_TFBS_sens
3R	14490075	3R_14490075_SNP [dm3] 3R_18664353_SNP [dm6]	T	A	1.548e^-4	0.957	UPSTREAM Cpsf73 INTRON Gos28
3R	14489814	3R_14489814_SNP [dm3] 3R_18664092_SNP [dm6]	G	C	1.552e^-4	0.957	UPSTREAM Cpsf73 INTRON Gos28	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	15965527	3R_15965527_SNP [dm3] 3R_20139805_SNP [dm6]	A	G	1.555e^-4	0.957	INTRON CR42836 EXON CR42836
3R	20995832	3R_20995832_SNP [dm3] 3R_25170110_SNP [dm6]	T	C	1.559e^-4	0.957	SYNONYMOUS_CODING lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	20995835	3R_20995835_SNP [dm3] 3R_25170113_SNP [dm6]	T	C	1.559e^-4	0.957	SYNONYMOUS_CODING lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	14696910	3R_14696910_SNP [dm3] 3R_18871188_SNP [dm6]	C	G	1.563e^-4	0.957	INTERGENIC
3R	10856448	3R_10856448_SNP [dm3] 3R_15030726_SNP [dm6]	G	A	1.566e^-4	0.957	INTERGENIC
3R	13789150	3R_13789150_SNP [dm3] 3R_17963428_SNP [dm6]	G	T	1.566e^-4	0.957	INTRON cpo
3R	24820297	3R_24820297_SNP [dm3] 3R_28994575_SNP [dm6]	C	T	1.610e^-4	0.957	INTRON wat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20921511	3R_20921511_SNP [dm3] 3R_25095789_SNP [dm6]	T	C	1.611e^-4	0.957	SYNONYMOUS_CODING fd96Cb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6033919	2L_6033919_SNP [dm3] 2L_6033919_SNP [dm6]	T	G	1.611e^-4	0.957	DOWNSTREAM mtm INTRON CG9109	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7903014	2L_7903014_SNP [dm3] 2L_7903014_SNP [dm6]	G	C	1.623e^-4	0.957	INTRON Snoo
2L	7903538	2L_7903538_SNP [dm3] 2L_7903538_SNP [dm6]	G	A	1.623e^-4	0.957	INTRON Snoo
X	4467006	X_4467006_SNP [dm3] X_4572973_SNP [dm6]	G	C	1.625e^-4	0.957	INTRON CR32773
3L	20612202	3L_20612202_SNP [dm3] 3L_20619102_SNP [dm6]	G	A	1.628e^-4	0.957	INTRON knrl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	5966209	2L_5966209_SNP [dm3] 2L_5966209_SNP [dm6]	T	G	1.629e^-4	0.957	SYNONYMOUS_CODING CG13992	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	15154221	X_15154221_SNP [dm3] X_15260188_SNP [dm6]	T	C	1.644e^-4	0.957	INTERGENIC
X	15108178	X_15108178_SNP [dm3] X_15214145_SNP [dm6]	G	A	1.659e^-4	0.957	INTERGENIC
X	15108324	X_15108324_SNP [dm3] X_15214291_SNP [dm6]	C	T	1.659e^-4	0.957	INTERGENIC
2R	12009184	2R_12009184_SNP [dm3] 2R_16121679_SNP [dm6]	C	T	1.661e^-4	0.957	SYNONYMOUS_CODING Jhe
3R	5558490	3R_5558490_SNP [dm3] 3R_9732768_SNP [dm6]	A	G	1.668e^-4	0.957	SYNONYMOUS_CODING alphaTub85E	TF binding site mE1_TFBS_cad
2R	12433034	2R_12433034_SNP [dm3] 2R_16545529_SNP [dm6]	G	A	1.672e^-4	0.957	INTERGENIC
2R	13398205	2R_13398205_DEL [dm3] 2R_17510700_DEL [dm6]	AACTAATAACTTA...	A	1.693e^-4	0.957	UTR_3_PRIME CG34193 UPSTREAM CG4847
2L	5090948	2L_5090948_SNP [dm3] 2L_5090948_SNP [dm6]	A	G	1.699e^-4	0.957	INTRON pgant5
2L	12127612	2L_12127612_SNP [dm3] 2L_12127612_SNP [dm6]	A	C	1.715e^-4	0.957	NON_SYNONYMOUS_CODING CG17211
2L	7051311	2L_7051311_SNP [dm3] 2L_7051311_SNP [dm6]	T	A	1.716e^-4	0.957	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3L	7452296	3L_7452296_SNP [dm3] 3L_7459196_SNP [dm6]	C	G	1.723e^-4	0.957	DOWNSTREAM ppk26 INTERGENIC
2L	3981132	2L_3981132_SNP [dm3] 2L_3981132_SNP [dm6]	C	A	1.724e^-4	0.957	INTRON fred
2L	10166340	2L_10166340_SNP [dm3] 2L_10166340_SNP [dm6]	G	T	1.749e^-4	0.957	INTRON CG44153
3L	2963783	3L_2963783_SNP [dm3] 3L_2963783_SNP [dm6]	T	A	1.752e^-4	0.957	UTR_3_PRIME Or63a
2R	5974111	2R_5974111_SNP [dm3] 2R_10086606_SNP [dm6]	T	C	1.753e^-4	0.957	NON_SYNONYMOUS_CODING sut4 UPSTREAM CG2269 INTRON CG2269
X	8632897	X_8632897_DEL [dm3] X_8738864_DEL [dm6]	TT	T	1.778e^-4	0.957	INTERGENIC
2R	14383229	2R_14383229_SNP [dm3] 2R_18495724_SNP [dm6]	C	G	1.789e^-4	0.957	INTRON CG30116
3L	2903314	3L_2903314_SNP [dm3] 3L_2903314_SNP [dm6]	T	G	1.790e^-4	0.957	INTRON Shab
2R	10711025	2R_10711025_SNP [dm3] 2R_14823520_SNP [dm6]	T	A	1.807e^-4	0.957	DOWNSTREAM CR45329 INTERGENIC
X	1389275	X_1389275_SNP [dm3] X_1495242_SNP [dm6]	G	C	1.811e^-4	0.957	INTRON inc & 1 other	TF binding site mE1_TFBS_chinmo
3R	18592810	3R_18592810_SNP [dm3] 3R_22767088_SNP [dm6]	G	T	1.821e^-4	0.957	UTR_3_PRIME CG13841 UPSTREAM CG4721 INTRON Usp12-46 & 1 other
2R	7420066	2R_7420066_SNP [dm3] 2R_11532561_SNP [dm6]	T	G	1.823e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	13398204	2R_13398204_SNP [dm3] 2R_17510699_SNP [dm6]	T	A	1.824e^-4	0.957	UTR_3_PRIME CG34193 UPSTREAM CG4847
3L	7136521	3L_7136521_SNP [dm3] 3L_7143421_SNP [dm6]	A	T	1.826e^-4	0.957	UTR_3_PRIME corn DOWNSTREAM melt
3R	13107479	3R_13107479_SNP [dm3] 3R_17281757_SNP [dm6]	G	C	1.835e^-4	0.957	INTERGENIC
2R	14618328	2R_14618328_SNP [dm3] 2R_18730823_SNP [dm6]	C	A	1.874e^-4	0.957	UPSTREAM List INTRON Hs3st-A
2L	7102283	2L_7102283_SNP [dm3] 2L_7102283_SNP [dm6]	A	T	1.878e^-4	0.957	INTRON Pvf3
X	19359671	X_19359671_SNP [dm3] X_19465638_SNP [dm6]	C	T	1.895e^-4	0.957	SYNONYMOUS_CODING kek5	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25537625	3R_25537625_SNP [dm3] 3R_29711903_SNP [dm6]	T	A	1.904e^-4	0.957	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	20929268	3R_20929268_SNP [dm3] 3R_25103546_SNP [dm6]	G	A	1.920e^-4	0.957	NON_SYNONYMOUS_CODING CG45095 DOWNSTREAM CG34027
3R	23882291	3R_23882291_SNP [dm3] 3R_28056569_SNP [dm6]	A	C	1.929e^-4	0.957	INTRON CG34362
X	4850462	X_4850462_SNP [dm3] X_4956429_SNP [dm6]	T	C	1.939e^-4	0.957	DOWNSTREAM CR44833 & 1 other INTERGENIC	TF binding site mE1_TFBS_kn
2L	4009682	2L_4009682_SNP [dm3] 2L_4009682_SNP [dm6]	G	A	1.947e^-4	0.957	DOWNSTREAM CG43774 INTERGENIC
X	4467615	X_4467615_SNP [dm3] X_4573582_SNP [dm6]	T	A	1.955e^-4	0.957	INTRON CR32773	TF binding site BDTNP1_TFBS_dl
2L	8975177	2L_8975177_SNP [dm3] 2L_8975177_SNP [dm6]	G	A	1.965e^-4	0.957	UTR_5_PRIME CG9541 UPSTREAM CG9541	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	17206983	3R_17206983_SNP [dm3] 3R_21381261_SNP [dm6]	T	A	1.970e^-4	0.957	INTRON tin	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	10482611	2L_10482611_SNP [dm3] 2L_10482611_SNP [dm6]	C	T	1.976e^-4	0.957	UPSTREAM Grip75 INTRON RluA-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2R	12433561	2R_12433561_SNP [dm3] 2R_16546056_SNP [dm6]	T	A	1.984e^-4	0.957	INTERGENIC
2L	9857580	2L_9857580_SNP [dm3] 2L_9857580_SNP [dm6]	G	A	1.989e^-4	0.957	INTRON nAChRalpha6
3R	20615400	3R_20615400_SNP [dm3] 3R_24789678_SNP [dm6]	G	A	2.002e^-4	0.957	INTRON Ets96B & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8709413	X_8709413_SNP [dm3] X_8815380_SNP [dm6]	C	T	2.003e^-4	0.957	INTERGENIC
3L	3858443	3L_3858443_SNP [dm3] 3L_3858443_SNP [dm6]	C	T	2.015e^-4	0.957	INTRON Awh	TF binding site mE1_TFBS_cad
2L	7903269	2L_7903269_SNP [dm3] 2L_7903269_SNP [dm6]	C	T	2.023e^-4	0.957	INTRON Snoo
2R	14228275	2R_14228275_SNP [dm3] 2R_18340770_SNP [dm6]	C	A	2.026e^-4	0.957	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14228279	2R_14228279_SNP [dm3] 2R_18340774_SNP [dm6]	C	A	2.026e^-4	0.957	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26963526	3R_26963526_SNP [dm3] 3R_31137804_SNP [dm6]	G	A	2.029e^-4	0.957	INTRON Gycbeta100B
2R	8672485	2R_8672485_SNP [dm3] 2R_12784980_SNP [dm6]	G	T	2.032e^-4	0.957	INTRON sca EXON CR45137	regulatory region REDfly_CRMs
2L	22051149	2L_22051149_SNP [dm3] 2L_22051149_SNP [dm6]	T	C	2.041e^-4	0.957	INTERGENIC	TF binding site mE1_TFBS_sens
3L	11365646	3L_11365646_SNP [dm3] 3L_11372546_SNP [dm6]	A	G	2.047e^-4	0.957	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	13760370	2R_13760370_SNP [dm3] 2R_17872865_SNP [dm6]	G	A	2.051e^-4	0.957	UPSTREAM Mapmodulin INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	13760403	2R_13760403_SNP [dm3] 2R_17872898_SNP [dm6]	T	C	2.051e^-4	0.957	UPSTREAM Mapmodulin INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5070813	2L_5070813_SNP [dm3] 2L_5070813_SNP [dm6]	C	A	2.054e^-4	0.957	UPSTREAM RpL37A DOWNSTREAM CR45305 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
2L	5070816	2L_5070816_SNP [dm3] 2L_5070816_SNP [dm6]	C	T	2.054e^-4	0.957	UPSTREAM RpL37A DOWNSTREAM CR45305 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
2L	5070818	2L_5070818_SNP [dm3] 2L_5070818_SNP [dm6]	T	A	2.054e^-4	0.957	UPSTREAM RpL37A DOWNSTREAM CR45305 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
3L	1266407	3L_1266407_SNP [dm3] 3L_1266407_SNP [dm6]	A	C	2.076e^-4	0.957	INTRON CG9134
2R	3011277	2R_3011277_DEL [dm3] 2R_7123772_DEL [dm6]	GGTGGCTCTGTGGTGGCGTC...	G	2.083e^-4	0.957	INTRON esn	TF binding site mE1_TFBS_cad
3R	9990822	3R_9990822_SNP [dm3] 3R_14165100_SNP [dm6]	G	C	2.090e^-4	0.957	DOWNSTREAM Dop1R1 INTERGENIC
2L	10085559	2L_10085559_SNP [dm3] 2L_10085559_SNP [dm6]	A	C	2.091e^-4	0.957	INTRON CG44153
3R	24444663	3R_24444663_SNP [dm3] 3R_28618941_SNP [dm6]	G	A	2.096e^-4	0.957	INTRON CG10011
2R	16218604	2R_16218604_SNP [dm3] 2R_20331099_SNP [dm6]	G	A	2.099e^-4	0.957	DOWNSTREAM CG8929 INTERGENIC	TF binding site mE1_TFBS_sens
3L	14233691	3L_14233691_SNP [dm3] 3L_14240591_SNP [dm6]	T	G	2.099e^-4	0.957	INTERGENIC	TF binding site mE1_TFBS_cad
3L	20869524	3L_20869524_SNP [dm3] 3L_20876424_SNP [dm6]	C	T	2.099e^-4	0.957	INTRON CG32432
X	13194306	X_13194306_SNP [dm3] X_13300273_SNP [dm6]	A	G	2.099e^-4	0.957	DOWNSTREAM CG1622 INTRON CG1764
X	18953102	X_18953102_SNP [dm3] X_19059069_SNP [dm6]	C	T	2.100e^-4	0.957	INTRON CG14190
2L	19289826	2L_19289826_SNP [dm3] 2L_19289826_SNP [dm6]	C	A	2.101e^-4	0.957	INTERGENIC
3L	16449068	3L_16449068_SNP [dm3] 3L_16455968_SNP [dm6]	T	C	2.102e^-4	0.957	INTRON CG33158	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14893919	2L_14893919_SNP [dm3] 2L_14893919_SNP [dm6]	G	A	2.102e^-4	0.957	INTERGENIC
2L	14893940	2L_14893940_SNP [dm3] 2L_14893940_SNP [dm6]	G	A	2.102e^-4	0.957	INTERGENIC
2L	14893947	2L_14893947_SNP [dm3] 2L_14893947_SNP [dm6]	C	T	2.102e^-4	0.957	INTERGENIC
2L	14893948	2L_14893948_SNP [dm3] 2L_14893948_SNP [dm6]	T	C	2.102e^-4	0.957	INTERGENIC
2L	12909485	2L_12909485_SNP [dm3] 2L_12909485_SNP [dm6]	T	A	2.126e^-4	0.957	INTERGENIC
2R	20496324	2R_20496324_SNP [dm3] 2R_24608801_SNP [dm6]	G	A	2.161e^-4	0.957	DOWNSTREAM CG42361 INTRON CG42360	TF binding site mE1_TFBS_cad
3L	13204589	3L_13204589_SNP [dm3] 3L_13211489_SNP [dm6]	T	C	2.164e^-4	0.957	UPSTREAM tRNA:CR32128 & 1 other DOWNSTREAM tRNA:CR32129 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14171930	3R_14171930_SNP [dm3] 3R_18346208_SNP [dm6]	A	G	2.166e^-4	0.957	INTRON CG15803
3L	9192581	3L_9192581_SNP [dm3] 3L_9199481_SNP [dm6]	T	C	2.171e^-4	0.957	INTERGENIC
3L	12891020	3L_12891020_SNP [dm3] 3L_12897920_SNP [dm6]	G	T	2.174e^-4	0.957	INTERGENIC
X	16427662	X_16427662_SNP [dm3] X_16533629_SNP [dm6]	T	A	2.182e^-4	0.957	UPSTREAM para INTERGENIC
3L	2991753	3L_2991753_SNP [dm3] 3L_2991753_SNP [dm6]	T	C	2.206e^-4	0.957	INTERGENIC
2R	6582632	2R_6582632_SNP [dm3] 2R_10695127_SNP [dm6]	T	C	2.227e^-4	0.957	INTRON stan
3R	16020590	3R_16020590_SNP [dm3] 3R_20194868_SNP [dm6]	T	A	2.239e^-4	0.957	INTERGENIC
3L	6379579	3L_6379579_SNP [dm3] 3L_6386479_SNP [dm6]	A	T	2.239e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	14176038	3R_14176038_SNP [dm3] 3R_18350316_SNP [dm6]	T	C	2.243e^-4	0.957	INTRON CG15803
2L	2657319	2L_2657319_SNP [dm3] 2L_2657319_SNP [dm6]	G	A	2.256e^-4	0.957	DOWNSTREAM Prosbeta4R2 INTERGENIC
2L	2657326	2L_2657326_INS [dm3] 2L_2657326_INS [dm6]	A	AA	2.256e^-4	0.957	DOWNSTREAM Prosbeta4R2 INTERGENIC
2R	6058420	2R_6058420_SNP [dm3] 2R_10170915_SNP [dm6]	G	A	2.258e^-4	0.957	INTRON KCNQ
2R	6058608	2R_6058608_SNP [dm3] 2R_10171103_SNP [dm6]	A	T	2.258e^-4	0.957	INTRON KCNQ
2R	2925335	2R_2925335_SNP [dm3] 2R_7037830_SNP [dm6]	T	A	2.272e^-4	0.957	UTR_5_PRIME CG33914 DOWNSTREAM Tsp42Ei
2L	16507418	2L_16507418_SNP [dm3] 2L_16507418_SNP [dm6]	T	G	2.274e^-4	0.957	UTR_3_PRIME Tpr2 DOWNSTREAM CG5953 & 1 other
2L	17569915	2L_17569915_SNP [dm3] 2L_17569915_SNP [dm6]	A	C	2.275e^-4	0.957	INTERGENIC
2R	12082156	2R_12082156_SNP [dm3] 2R_16194651_SNP [dm6]	A	G	2.287e^-4	0.957	SYNONYMOUS_CODING calypso DOWNSTREAM clu	TF binding site mE1_TFBS_cad
X	4542095	X_4542095_SNP [dm3] X_4648062_SNP [dm6]	C	T	2.290e^-4	0.957	SYNONYMOUS_CODING mRpL30 UPSTREAM HLH4C DOWNSTREAM Torsin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	15531943	X_15531943_INS [dm3] X_15637910_INS [dm6]	C	CTATATGCTATAC...	2.315e^-4	0.957	DOWNSTREAM CR44423 INTERGENIC
3L	21105894	3L_21105894_SNP [dm3] 3L_21112794_SNP [dm6]	T	C	2.324e^-4	0.957	INTRON ko	regulatory region REDfly_CRMs
3R	20247843	3R_20247843_SNP [dm3] 3R_24422121_SNP [dm6]	A	C	2.330e^-4	0.957	INTRON nAChRalpha1
2L	18767644	2L_18767644_SNP [dm3] 2L_18767644_SNP [dm6]	C	A	2.337e^-4	0.957	INTRON ham
X	12669027	X_12669027_SNP [dm3] X_12774994_SNP [dm6]	T	A	2.340e^-4	0.957	UTR_3_PRIME CG32647 DOWNSTREAM CG32647
2R	2743601	2R_2743601_SNP [dm3] 2R_6856096_SNP [dm6]	C	A	2.343e^-4	0.957	INTERGENIC
2R	11662731	2R_11662731_SNP [dm3] 2R_15775226_SNP [dm6]	T	C	2.343e^-4	0.957	SYNONYMOUS_CODING Zasp52 INTRON Zasp52	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	20858052	3L_20858052_SNP [dm3] 3L_20864952_SNP [dm6]	T	G	2.346e^-4	0.957	INTRON CG32432
2L	7905335	2L_7905335_INS [dm3] 2L_7905335_INS [dm6]	A	AAA	2.349e^-4	0.957	INTRON Snoo	TF binding site mE1_TFBS_chinmo
3R	25296094	3R_25296094_INS [dm3] 3R_29470372_INS [dm6]	C	CTTC	2.362e^-4	0.957	INTRON Ptp99A
2R	4696226	2R_4696226_SNP [dm3] 2R_8808721_SNP [dm6]	G	A	2.367e^-4	0.957	INTRON sns	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11665642	2R_11665642_SNP [dm3] 2R_15778137_SNP [dm6]	C	T	2.371e^-4	0.957	INTRON Zasp52
2L	6388037	2L_6388037_SNP [dm3] 2L_6388037_SNP [dm6]	G	A	2.378e^-4	0.957	INTRON CG42368
X	13167151	X_13167151_SNP [dm3] X_13273118_SNP [dm6]	T	A	2.378e^-4	0.957	UPSTREAM HDAC4 INTRON HDAC4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	6574867	3L_6574867_SNP [dm3] 3L_6581767_SNP [dm6]	G	C	2.387e^-4	0.957	INTRON CG18769 & 1 other
3L	6574872	3L_6574872_SNP [dm3] 3L_6581772_SNP [dm6]	G	T	2.387e^-4	0.957	INTRON CG18769 & 1 other
3L	6574873	3L_6574873_DEL [dm3] 3L_6581773_DEL [dm6]	GCCTTAACACCCTTGGG...	G	2.387e^-4	0.957	INTRON CG18769 & 1 other
3L	8913563	3L_8913563_SNP [dm3] 3L_8920463_SNP [dm6]	A	T	2.395e^-4	0.957	INTRON Tsp66E
X	2535509	X_2535509_SNP [dm3] X_2641476_SNP [dm6]	G	A	2.413e^-4	0.957	INTRON sgg	TF binding site BDTNP1_TFBS_dl
2R	18443008	2R_18443008_SNP [dm3] 2R_22555503_SNP [dm6]	C	T	2.417e^-4	0.957	SYNONYMOUS_CODING px	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14414084	2R_14414084_DEL [dm3] 2R_18526579_DEL [dm6]	GCCACTGG	G	2.419e^-4	0.957	UPSTREAM CG10924 DOWNSTREAM CG43066 INTERGENIC
X	4850465	X_4850465_SNP [dm3] X_4956432_SNP [dm6]	G	T	2.421e^-4	0.957	DOWNSTREAM CR44833 & 1 other INTERGENIC	TF binding site mE1_TFBS_kn
2L	5070866	2L_5070866_SNP [dm3] 2L_5070866_SNP [dm6]	A	T	2.429e^-4	0.957	UPSTREAM RpL37A DOWNSTREAM CR45305 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
3L	17933462	3L_17933462_SNP [dm3] 3L_17940362_SNP [dm6]	C	T	2.432e^-4	0.957	INTRON CG43174
2L	8651223	2L_8651223_SNP [dm3] 2L_8651223_SNP [dm6]	A	G	2.441e^-4	0.957	INTRON Sema-1a
2R	14655776	2R_14655776_SNP [dm3] 2R_18768271_SNP [dm6]	T	C	2.446e^-4	0.957	SPLICE_SITE_REGION Mctp INTRON Mctp	TF binding site mE1_TFBS_chinmo
3L	8523077	3L_8523077_SNP [dm3] 3L_8529977_SNP [dm6]	T	C	2.447e^-4	0.957	INTRON foi
2L	8044273	2L_8044273_SNP [dm3] 2L_8044273_SNP [dm6]	C	T	2.466e^-4	0.957	INTRON CG7466	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	24819099	3R_24819099_SNP [dm3] 3R_28993377_SNP [dm6]	A	G	2.485e^-4	0.957	INTRON wat	TF binding site mE1_TFBS_HSA
2L	5637402	2L_5637402_SNP [dm3] 2L_5637402_SNP [dm6]	G	A	2.494e^-4	0.957	INTRON CG31646
3L	11473802	3L_11473802_SNP [dm3] 3L_11480702_SNP [dm6]	T	C	2.496e^-4	0.957	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	16403701	2L_16403701_SNP [dm3] 2L_16403701_SNP [dm6]	C	A	2.505e^-4	0.957	INTRON CG5888
3L	6727832	3L_6727832_SNP [dm3] 3L_6734732_SNP [dm6]	C	G	2.508e^-4	0.957	SYNONYMOUS_CODING dikar	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24819651	3R_24819651_SNP [dm3] 3R_28993929_SNP [dm6]	C	A	2.508e^-4	0.957	SYNONYMOUS_CODING wat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20850418	3L_20850418_DEL [dm3] 3L_20857318_DEL [dm6]	TT	T	2.511e^-4	0.957	INTRON CG32432
2L	5341377	2L_5341377_SNP [dm3] 2L_5341377_SNP [dm6]	G	A	2.516e^-4	0.957	INTRON CG12512
3R	8151515	3R_8151515_SNP [dm3] 3R_12325793_SNP [dm6]	T	C	2.559e^-4	0.957	DOWNSTREAM CG10013 INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	11662174	2R_11662174_SNP [dm3] 2R_15774669_SNP [dm6]	G	A	2.572e^-4	0.957	NON_SYNONYMOUS_CODING Zasp52 UTR_5_PRIME Zasp52 INTRON Zasp52	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	12700456	X_12700456_SNP [dm3] X_12806423_SNP [dm6]	G	A	2.594e^-4	0.957	INTRON Pde9	TF binding site BDTNP1_TFBS_twi
X	12700512	X_12700512_SNP [dm3] X_12806479_SNP [dm6]	C	T	2.594e^-4	0.957	INTRON Pde9	TF binding site BDTNP1_TFBS_twi
X	4467089	X_4467089_SNP [dm3] X_4573056_SNP [dm6]	T	A	2.595e^-4	0.957	INTRON CR32773
2R	16581306	2R_16581306_SNP [dm3] 2R_20693801_SNP [dm6]	A	G	2.599e^-4	0.957	DOWNSTREAM CG13438 INTERGENIC
3L	2963806	3L_2963806_SNP [dm3] 3L_2963806_SNP [dm6]	T	G	2.607e^-4	0.957	DOWNSTREAM Or63a INTERGENIC
3L	2963812	3L_2963812_SNP [dm3] 3L_2963812_SNP [dm6]	T	A	2.607e^-4	0.957	DOWNSTREAM Or63a INTERGENIC
X	12213571	X_12213571_SNP [dm3] X_12319538_SNP [dm6]	T	C	2.633e^-4	0.957	INTRON Ten-a	TF binding site mE1_TFBS_cad
2L	5260050	2L_5260050_SNP [dm3] 2L_5260050_SNP [dm6]	G	A	2.634e^-4	0.957	DOWNSTREAM CR44744 INTRON tkv
2R	11661640	2R_11661640_SNP [dm3] 2R_15774135_SNP [dm6]	G	T	2.640e^-4	0.957	INTRON Zasp52	TF binding site mE1_TFBS_chinmo
3R	14049090	3R_14049090_SNP [dm3] 3R_18223368_SNP [dm6]	C	G	2.650e^-4	0.957	SYNONYMOUS_CODING mTerf5 UPSTREAM CG7993	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	20995814	3R_20995814_SNP [dm3] 3R_25170092_SNP [dm6]	T	C	2.653e^-4	0.957	SYNONYMOUS_CODING lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	16657129	X_16657129_SNP [dm3] X_16763096_SNP [dm6]	G	A	2.670e^-4	0.957	INTRON if	TF binding site BDTNP1_TFBS_twi
2R	7321990	2R_7321990_SNP [dm3] 2R_11434485_SNP [dm6]	G	A	2.690e^-4	0.957	INTERGENIC
3R	19909995	3R_19909995_SNP [dm3] 3R_24084273_SNP [dm6]	G	A	2.690e^-4	0.957	INTRON 4EHP
2L	12333152	2L_12333152_SNP [dm3] 2L_12333152_SNP [dm6]	A	G	2.691e^-4	0.957	INTERGENIC
3L	2084775	3L_2084775_SNP [dm3] 3L_2084775_SNP [dm6]	A	G	2.695e^-4	0.957	NON_SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	8735695	X_8735695_SNP [dm3] X_8841662_SNP [dm6]	A	T	2.701e^-4	0.957	INTRON CG12075
X	9504940	X_9504940_SNP [dm3] X_9610907_SNP [dm6]	C	A	2.710e^-4	0.957	SYNONYMOUS_CODING CG42797	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24739961	3R_24739961_SNP [dm3] 3R_28914239_SNP [dm6]	G	A	2.716e^-4	0.957	INTRON Doa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20856998	3L_20856998_SNP [dm3] 3L_20863898_SNP [dm6]	C	A	2.724e^-4	0.957	INTRON CG32432
2L	18744407	2L_18744407_SNP [dm3] 2L_18744407_SNP [dm6]	C	T	2.724e^-4	0.957	INTERGENIC
2L	10072987	2L_10072987_SNP [dm3] 2L_10072987_SNP [dm6]	A	G	2.725e^-4	0.957	INTRON CG44153	TF binding site mE1_TFBS_inv
2R	14413986	2R_14413986_SNP [dm3] 2R_18526481_SNP [dm6]	C	A	2.726e^-4	0.957	UPSTREAM CG10924 DOWNSTREAM CG43066 INTERGENIC
2L	12144306	2L_12144306_SNP [dm3] 2L_12144306_SNP [dm6]	T	C	2.727e^-4	0.957	UPSTREAM CG31760 INTRON CG31760
2L	15251517	2L_15251517_SNP [dm3] 2L_15251517_SNP [dm6]	G	A	2.744e^-4	0.957	SYNONYMOUS_CODING dao	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3767201	3L_3767201_SNP [dm3] 3L_3767201_SNP [dm6]	C	T	2.745e^-4	0.957	SYNONYMOUS_CODING CG32264	TF binding site mE1_TFBS_bab1
3L	10882004	3L_10882004_SNP [dm3] 3L_10888904_SNP [dm6]	A	T	2.750e^-4	0.957	INTERGENIC
2R	17886860	2R_17886860_SNP [dm3] 2R_21999355_SNP [dm6]	G	T	2.762e^-4	0.957	INTRON CG34370
X	2670559	X_2670559_SNP [dm3] X_2776526_SNP [dm6]	C	T	2.768e^-4	0.957	INTRON kirre
2L	563223	2L_563223_SNP [dm3] 2L_563223_SNP [dm6]	T	C	2.774e^-4	0.957	START_GAINED CG11835 UTR_5_PRIME CG11835 UPSTREAM CG2794 INTRON CG11835	TF binding site mE1_TFBS_chinmo
3L	6379158	3L_6379158_SNP [dm3] 3L_6386058_SNP [dm6]	A	G	2.778e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	15031924	2L_15031924_SNP [dm3] 2L_15031924_SNP [dm6]	T	A	2.781e^-4	0.957	UPSTREAM CG31832 INTRON GABA-B-R1
X	7261795	X_7261795_SNP [dm3] X_7367762_SNP [dm6]	C	A	2.786e^-4	0.957	INTRON CG1677 & 1 other
3R	9972879	3R_9972879_SNP [dm3] 3R_14147157_SNP [dm6]	C	T	2.786e^-4	0.957	INTERGENIC
X	15166090	X_15166090_SNP [dm3] X_15272057_SNP [dm6]	A	G	2.787e^-4	0.957	UTR_5_PRIME CG9106
2L	12922610	2L_12922610_SNP [dm3] 2L_12922610_SNP [dm6]	A	G	2.794e^-4	0.957	INTRON ACXA
2L	3774131	2L_3774131_SNP [dm3] 2L_3774131_SNP [dm6]	C	G	2.797e^-4	0.957	INTRON bowl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14894064	2L_14894064_SNP [dm3] 2L_14894064_SNP [dm6]	C	T	2.801e^-4	0.957	INTERGENIC
2L	14894065	2L_14894065_SNP [dm3] 2L_14894065_SNP [dm6]	T	C	2.801e^-4	0.957	INTERGENIC
2L	18884223	2L_18884223_SNP [dm3] 2L_18884223_SNP [dm6]	T	G	2.811e^-4	0.957	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	9981337	3R_9981337_SNP [dm3] 3R_14155615_SNP [dm6]	T	C	2.812e^-4	0.957	SYNONYMOUS_CODING CG31533	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	13370787	X_13370787_SNP [dm3] X_13476754_SNP [dm6]	C	T	2.821e^-4	0.957	INTRON Neto
2L	5961391	2L_5961391_SNP [dm3] 2L_5961391_SNP [dm6]	G	A	2.821e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10819064	2L_10819064_SNP [dm3] 2L_10819064_SNP [dm6]	G	A	2.824e^-4	0.957	UPSTREAM CG6508 INTRON Nos
2L	1359422	2L_1359422_SNP [dm3] 2L_1359422_SNP [dm6]	A	G	2.829e^-4	0.957	SPLICE_SITE_REGION CG31659 DOWNSTREAM NLaz INTRON CG31659
2R	12392092	2R_12392092_SNP [dm3] 2R_16504587_SNP [dm6]	C	A	2.832e^-4	0.957	INTRON Sema-2a
3L	5183621	3L_5183621_SNP [dm3] 3L_5190521_SNP [dm6]	T	C	2.834e^-4	0.957	INTRON shep
3R	3818558	3R_3818558_SNP [dm3] 3R_7992836_SNP [dm6]	G	T	2.835e^-4	0.957	INTRON CG2781
2R	16581297	2R_16581297_SNP [dm3] 2R_20693792_SNP [dm6]	G	A	2.840e^-4	0.957	DOWNSTREAM CG13438 INTERGENIC
3L	12615476	3L_12615476_SNP [dm3] 3L_12622376_SNP [dm6]	C	T	2.860e^-4	0.957	DOWNSTREAM caup INTERGENIC
2L	6939041	2L_6939041_SNP [dm3] 2L_6939041_SNP [dm6]	T	C	2.877e^-4	0.957	NON_SYNONYMOUS_CODING CG18304	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	5367615	2L_5367615_SNP [dm3] 2L_5367615_SNP [dm6]	A	T	2.889e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	9856290	2L_9856290_SNP [dm3] 2L_9856290_SNP [dm6]	T	C	2.889e^-4	0.957	INTRON nAChRalpha6
3R	14611846	3R_14611846_SNP [dm3] 3R_18786124_SNP [dm6]	C	T	2.892e^-4	0.957	INTRON CG7720
2R	19535817	2R_19535817_SNP [dm3] 2R_23648294_SNP [dm6]	A	G	2.892e^-4	0.957	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5968517	2L_5968517_SNP [dm3] 2L_5968517_SNP [dm6]	T	A	2.911e^-4	0.957	UPSTREAM Ucp4C & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	1345797	2R_1345797_SNP [dm3] 2R_5458292_SNP [dm6]	A	C	2.913e^-4	0.957	INTERGENIC
2L	20039836	2L_20039836_SNP [dm3] 2L_20039836_SNP [dm6]	A	G	2.917e^-4	0.957	INTRON sNPF
3L	9428714	3L_9428714_SNP [dm3] 3L_9435614_SNP [dm6]	A	G	2.918e^-4	0.957	UPSTREAM CG42526 INTRON MTF-1
3L	9428725	3L_9428725_SNP [dm3] 3L_9435625_SNP [dm6]	A	T	2.918e^-4	0.957	UPSTREAM CG42526 INTRON MTF-1
2R	8360544	2R_8360544_SNP [dm3] 2R_12473039_SNP [dm6]	T	C	2.923e^-4	0.957	SYNONYMOUS_CODING CG8550
2R	11665880	2R_11665880_SNP [dm3] 2R_15778375_SNP [dm6]	G	A	2.941e^-4	0.957	SYNONYMOUS_CODING Zasp52
3R	10854896	3R_10854896_SNP [dm3] 3R_15029174_SNP [dm6]	C	T	2.941e^-4	0.957	INTERGENIC
2L	12149014	2L_12149014_SNP [dm3] 2L_12149014_SNP [dm6]	A	G	2.952e^-4	0.957	INTRON CG31760
2L	2014940	2L_2014940_SNP [dm3] 2L_2014940_SNP [dm6]	C	T	2.954e^-4	0.957	INTRON CG4238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13683917	X_13683917_SNP [dm3] X_13789884_SNP [dm6]	C	T	2.960e^-4	0.957	DOWNSTREAM CG10993 INTRON inaE
2R	14618307	2R_14618307_SNP [dm3] 2R_18730802_SNP [dm6]	T	C	2.960e^-4	0.957	UPSTREAM List INTRON Hs3st-A
2R	17656399	2R_17656399_SNP [dm3] 2R_21768894_SNP [dm6]	G	C	2.962e^-4	0.957	NON_SYNONYMOUS_CODING CG30395 SPLICE_SITE_REGION CG30395
2L	10230182	2L_10230182_SNP [dm3] 2L_10230182_SNP [dm6]	C	T	2.986e^-4	0.957	INTRON CG5694	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	8709332	X_8709332_SNP [dm3] X_8815299_SNP [dm6]	G	A	2.993e^-4	0.957	INTERGENIC
2L	7908288	2L_7908288_SNP [dm3] 2L_7908288_SNP [dm6]	A	C	3.005e^-4	0.957	INTRON Snoo
2L	8712101	2L_8712101_SNP [dm3] 2L_8712101_SNP [dm6]	T	G	3.007e^-4	0.957	INTRON raw
2L	20039756	2L_20039756_SNP [dm3] 2L_20039756_SNP [dm6]	C	A	3.008e^-4	0.957	INTRON sNPF
2L	7051183	2L_7051183_SNP [dm3] 2L_7051183_SNP [dm6]	A	C	3.026e^-4	0.957	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	7051187	2L_7051187_DEL [dm3] 2L_7051187_DEL [dm6]	ATTTGTGTAGAAGATTCTCA...	A	3.026e^-4	0.957	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	2286749	2L_2286749_SNP [dm3] 2L_2286749_SNP [dm6]	A	G	3.043e^-4	0.957	SYNONYMOUS_CODING CG31681 DOWNSTREAM CG4271 & 1 other
X	2670549	X_2670549_SNP [dm3] X_2776516_SNP [dm6]	T	A	3.046e^-4	0.957	INTRON kirre
2L	8439587	2L_8439587_SNP [dm3] 2L_8439587_SNP [dm6]	A	G	3.047e^-4	0.957	SYNONYMOUS_CODING mus201	TF binding site mE1_TFBS_sens
2R	14551107	2R_14551107_SNP [dm3] 2R_18663602_SNP [dm6]	T	C	3.068e^-4	0.957	DOWNSTREAM CG33136 INTERGENIC
2R	19905653	2R_19905653_SNP [dm3] 2R_24018130_SNP [dm6]	C	T	3.076e^-4	0.957	UPSTREAM CG4324 INTRON CG3121	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2R	12311521	2R_12311521_DEL [dm3] 2R_16424016_DEL [dm6]	TT	T	3.077e^-4	0.957	INTRON Sema-2b
2L	20102159	2L_20102159_MNP [dm3] 2L_20102159_MNP [dm6]	TTA	AAT	3.088e^-4	0.957	INTRON Kua
3L	8024440	3L_8024440_SNP [dm3] 3L_8031340_SNP [dm6]	A	G	3.100e^-4	0.957	INTRON nmo
3R	25613599	3R_25613599_SNP [dm3] 3R_29787877_SNP [dm6]	T	C	3.108e^-4	0.957	INTRON kay
2R	16892808	2R_16892808_SNP [dm3] 2R_21005303_SNP [dm6]	C	T	3.122e^-4	0.957	SYNONYMOUS_CODING CG10543	TF binding site mE1_TFBS_cad
2R	12433412	2R_12433412_SNP [dm3] 2R_16545907_SNP [dm6]	T	A	3.126e^-4	0.957	INTERGENIC
2L	9488740	2L_9488740_SNP [dm3] 2L_9488740_SNP [dm6]	C	T	3.128e^-4	0.957	INTERGENIC
2R	15920713	2R_15920713_SNP [dm3] 2R_20033208_SNP [dm6]	T	G	3.142e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3R	17795511	3R_17795511_SNP [dm3] 3R_21969789_SNP [dm6]	A	T	3.154e^-4	0.957	INTRON Eip93F
2R	18442651	2R_18442651_SNP [dm3] 2R_22555146_SNP [dm6]	C	A	3.154e^-4	0.957	INTRON px	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13879258	3L_13879258_SNP [dm3] 3L_13886158_SNP [dm6]	T	C	3.162e^-4	0.957	INTRON dysc
3L	4092138	3L_4092138_DEL [dm3] 3L_4092138_DEL [dm6]	CTAC	C	3.190e^-4	0.957	UTR_3_PRIME CG14989 DOWNSTREAM CG14989
3R	5853949	3R_5853949_SNP [dm3] 3R_10028227_SNP [dm6]	G	A	3.193e^-4	0.957	INTRON Mical
3L	9417765	3L_9417765_SNP [dm3] 3L_9424665_SNP [dm6]	G	A	3.213e^-4	0.957	UTR_3_PRIME aay INTRON CG3967	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	9417769	3L_9417769_SNP [dm3] 3L_9424669_SNP [dm6]	G	A	3.213e^-4	0.957	UTR_3_PRIME aay INTRON CG3967	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	22136377	3L_22136377_DEL [dm3] 3L_22143277_DEL [dm6]	CACATGTACGTAC...	C	3.218e^-4	0.957	INTRON olf413	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	16893052	2R_16893052_SNP [dm3] 2R_21005547_SNP [dm6]	T	C	3.221e^-4	0.957	SYNONYMOUS_CODING CG10543	TF binding site mE1_TFBS_cad
3R	13117533	3R_13117533_SNP [dm3] 3R_17291811_SNP [dm6]	T	A	3.234e^-4	0.957	INTERGENIC
3R	13117539	3R_13117539_SNP [dm3] 3R_17291817_SNP [dm6]	T	C	3.234e^-4	0.957	INTERGENIC
2L	5070941	2L_5070941_SNP [dm3] 2L_5070941_SNP [dm6]	A	C	3.244e^-4	0.957	UPSTREAM RpL37A DOWNSTREAM qtc EXON CR45305	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
X	4467609	X_4467609_SNP [dm3] X_4573576_SNP [dm6]	T	A	3.252e^-4	0.957	INTRON CR32773	TF binding site BDTNP1_TFBS_dl
3R	3818624	3R_3818624_SNP [dm3] 3R_7992902_SNP [dm6]	G	T	3.263e^-4	0.957	INTRON CG2781
2R	7962897	2R_7962897_SNP [dm3] 2R_12075392_SNP [dm6]	C	G	3.279e^-4	0.957	INTRON CG8888
2L	5070853	2L_5070853_SNP [dm3] 2L_5070853_SNP [dm6]	A	T	3.312e^-4	0.957	UPSTREAM RpL37A DOWNSTREAM CR45305 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
2R	13439124	2R_13439124_SNP [dm3] 2R_17551619_SNP [dm6]	G	T	3.312e^-4	0.957	SYNONYMOUS_CODING MESR4	TF binding site mE1_TFBS_cad
2R	6358554	2R_6358554_SNP [dm3] 2R_10471049_SNP [dm6]	G	T	3.312e^-4	0.957	INTRON whd
3L	20691620	3L_20691620_SNP [dm3] 3L_20698520_SNP [dm6]	G	A	3.321e^-4	0.957	INTERGENIC	regulatory region FlyBase TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_tll BDTNP1_TFBS_twi
X	8726331	X_8726331_SNP [dm3] X_8832298_SNP [dm6]	G	A	3.324e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12435492	2R_12435492_SNP [dm3] 2R_16547987_SNP [dm6]	T	C	3.327e^-4	0.957	INTERGENIC
2R	12436872	2R_12436872_SNP [dm3] 2R_16549367_SNP [dm6]	G	C	3.327e^-4	0.957	INTERGENIC
3R	14175859	3R_14175859_SNP [dm3] 3R_18350137_SNP [dm6]	C	A	3.329e^-4	0.957	INTRON CG15803
2R	11663131	2R_11663131_SNP [dm3] 2R_15775626_SNP [dm6]	T	A	3.340e^-4	0.957	INTRON Zasp52	TF binding site mE1_TFBS_chinmo
2R	2896311	2R_2896311_INS [dm3] 2R_7008806_INS [dm6]	T	GTTGGAAA	3.345e^-4	0.957	DOWNSTREAM Tsp42Ed & 1 other INTERGENIC
3R	19211784	3R_19211784_SNP [dm3] 3R_23386062_SNP [dm6]	T	C	3.347e^-4	0.957	INTERGENIC	TF binding site mE1_TFBS_Trl
X	14631909	X_14631909_SNP [dm3] X_14737876_SNP [dm6]	C	T	3.348e^-4	0.957	INTRON NetB
2L	12261713	2L_12261713_SNP [dm3] 2L_12261713_SNP [dm6]	A	G	3.350e^-4	0.957	INTRON aret
2L	8970139	2L_8970139_SNP [dm3] 2L_8970139_SNP [dm6]	A	T	3.353e^-4	0.957	UTR_3_PRIME CG18088 DOWNSTREAM CG9541 & 1 other
2L	11648327	2L_11648327_SNP [dm3] 2L_11648327_SNP [dm6]	A	C	3.359e^-4	0.957	NON_SYNONYMOUS_CODING CG6614	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	3279726	3L_3279726_SNP [dm3] 3L_3279726_SNP [dm6]	G	T	3.360e^-4	0.957	UPSTREAM CG12017 INTERGENIC
2L	11148117	2L_11148117_SNP [dm3] 2L_11148117_SNP [dm6]	A	C	3.362e^-4	0.957	INTRON Gyc32E
3L	1604576	3L_1604576_SNP [dm3] 3L_1604576_SNP [dm6]	A	G	3.362e^-4	0.957	SYNONYMOUS_CODING CG18170 UTR_5_PRIME CG33791 UPSTREAM CG33791
3R	6511662	3R_6511662_SNP [dm3] 3R_10685940_SNP [dm6]	A	C	3.367e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	6511669	3R_6511669_SNP [dm3] 3R_10685947_SNP [dm6]	T	C	3.367e^-4	0.957	UPSTREAM Skeletor INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	12186966	X_12186966_SNP [dm3] X_12292933_SNP [dm6]	C	T	3.370e^-4	0.957	INTRON Ten-a
2R	14462361	2R_14462361_DEL [dm3] 2R_18574856_DEL [dm6]	CCGCAGTTGC	C	3.378e^-4	0.957	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	4467787	X_4467787_SNP [dm3] X_4573754_SNP [dm6]	T	C	3.402e^-4	0.957	INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	12311473	2R_12311473_SNP [dm3] 2R_16423968_SNP [dm6]	T	C	3.405e^-4	0.957	INTRON Sema-2b
2L	21232993	2L_21232993_SNP [dm3] 2L_21232993_SNP [dm6]	G	C	3.406e^-4	0.957	SYNONYMOUS_CODING CG31626 DOWNSTREAM CG8677 EXON CR45713	TF binding site mE1_TFBS_HSA
2R	9739637	2R_9739637_SNP [dm3] 2R_13852132_SNP [dm6]	T	G	3.415e^-4	0.957	NON_SYNONYMOUS_CODING CG30485 DOWNSTREAM CG6543
2R	11662923	2R_11662923_SNP [dm3] 2R_15775418_SNP [dm6]	G	A	3.426e^-4	0.957	SYNONYMOUS_CODING Zasp52 INTRON Zasp52	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10815470	3L_10815470_SNP [dm3] 3L_10822370_SNP [dm6]	A	G	3.430e^-4	0.957	INTERGENIC
2L	14311764	2L_14311764_INS [dm3] 2L_14311764_INS [dm6]	T	TG	3.437e^-4	0.957	INTRON wb
X	8523838	X_8523838_SNP [dm3] X_8629805_SNP [dm6]	T	A	3.443e^-4	0.957	DOWNSTREAM oc INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	12700558	X_12700558_SNP [dm3] X_12806525_SNP [dm6]	T	C	3.447e^-4	0.957	INTRON Pde9	TF binding site BDTNP1_TFBS_twi
2L	7333411	2L_7333411_SNP [dm3] 2L_7333411_SNP [dm6]	G	A	3.452e^-4	0.957	UPSTREAM Wnt6 INTERGENIC
3R	23884703	3R_23884703_SNP [dm3] 3R_28058981_SNP [dm6]	A	G	3.457e^-4	0.957	INTRON CG34362
2L	4351070	2L_4351070_SNP [dm3] 2L_4351070_SNP [dm6]	C	T	3.459e^-4	0.957	EXON CR44700	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	12318165	3R_12318165_SNP [dm3] 3R_16492443_SNP [dm6]	G	A	3.465e^-4	0.957	SYNONYMOUS_CODING Cad89D
2R	7652747	2R_7652747_SNP [dm3] 2R_11765242_SNP [dm6]	G	T	3.467e^-4	0.957	INTRON ths
2L	8978806	2L_8978806_SNP [dm3] 2L_8978806_SNP [dm6]	G	A	3.490e^-4	0.957	INTRON CG13101
2R	18442980	2R_18442980_SNP [dm3] 2R_22555475_SNP [dm6]	G	A	3.493e^-4	0.957	SYNONYMOUS_CODING px	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	13093994	X_13093994_SNP [dm3] X_13199961_SNP [dm6]	C	G	3.503e^-4	0.957	INTRON sno	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	13094021	X_13094021_SNP [dm3] X_13199988_SNP [dm6]	C	T	3.503e^-4	0.957	INTRON sno	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	13094146	X_13094146_SNP [dm3] X_13200113_SNP [dm6]	A	C	3.503e^-4	0.957	SYNONYMOUS_CODING sno	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	11875342	3L_11875342_SNP [dm3] 3L_11882242_SNP [dm6]	C	T	3.508e^-4	0.957	SYNONYMOUS_CODING CCDC151 INTRON CG44837
3L	4457622	3L_4457622_SNP [dm3] 3L_4457622_SNP [dm6]	A	C	3.522e^-4	0.957	NON_SYNONYMOUS_CODING CG11345
2R	9466018	2R_9466018_INS [dm3] 2R_13578513_INS [dm6]	C	CC	3.523e^-4	0.957	DOWNSTREAM CR44365 EXON CR44366	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17404882	2R_17404882_SNP [dm3] 2R_21517377_SNP [dm6]	T	C	3.534e^-4	0.957	SYNONYMOUS_CODING CG10494 DOWNSTREAM MESK2
2R	12433283	2R_12433283_SNP [dm3] 2R_16545778_SNP [dm6]	A	G	3.547e^-4	0.957	INTERGENIC
3L	12197962	3L_12197962_SNP [dm3] 3L_12204862_SNP [dm6]	C	T	3.548e^-4	0.957	NON_SYNONYMOUS_CODING CG5626 UPSTREAM Adk1
X	16817544	X_16817544_SNP [dm3] X_16923511_SNP [dm6]	C	G	3.550e^-4	0.957	INTRON CG4928
X	12205170	X_12205170_SNP [dm3] X_12311137_SNP [dm6]	G	A	3.551e^-4	0.957	INTRON Ten-a
3R	17207040	3R_17207040_SNP [dm3] 3R_21381318_SNP [dm6]	T	A	3.555e^-4	0.957	INTRON tin	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	9828530	2L_9828530_SNP [dm3] 2L_9828530_SNP [dm6]	T	C	3.579e^-4	0.957	INTRON nAChRalpha6	TF binding site mE1_TFBS_chinmo
2R	14992724	2R_14992724_SNP [dm3] 2R_19105219_SNP [dm6]	A	C	3.592e^-4	0.957	INTRON 5-HT1A
3R	27078849	3R_27078849_SNP [dm3] 3R_31253127_SNP [dm6]	C	A	3.593e^-4	0.957	NON_SYNONYMOUS_CODING mRpL32 UPSTREAM qless DOWNSTREAM CG1750	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	27079408	3R_27079408_SNP [dm3] 3R_31253686_SNP [dm6]	G	A	3.593e^-4	0.957	SYNONYMOUS_CODING CG1750 UTR_3_PRIME mRpL32	TF binding site mE1_TFBS_sens
2R	11412837	2R_11412837_SNP [dm3] 2R_15525332_SNP [dm6]	A	G	3.598e^-4	0.957	SPLICE_SITE_REGION Khc-73 INTRON Khc-73
2L	7902475	2L_7902475_SNP [dm3] 2L_7902475_SNP [dm6]	C	T	3.600e^-4	0.957	INTRON Snoo
3R	10578747	3R_10578747_SNP [dm3] 3R_14753025_SNP [dm6]	A	T	3.613e^-4	0.957	SYNONYMOUS_CODING CG7362 INTRON jvl	TF binding site mE1_TFBS_cad
2L	7586213	2L_7586213_SNP [dm3] 2L_7586213_SNP [dm6]	C	T	3.618e^-4	0.957	INTERGENIC
X	8717448	X_8717448_SNP [dm3] X_8823415_SNP [dm6]	T	A	3.620e^-4	0.957	INTERGENIC
X	12126737	X_12126737_SNP [dm3] X_12232704_SNP [dm6]	A	T	3.624e^-4	0.957	INTRON Ten-a
2R	11336075	2R_11336075_SNP [dm3] 2R_15448570_SNP [dm6]	G	A	3.628e^-4	0.957	INTRON CG43729
2L	14055160	2L_14055160_SNP [dm3] 2L_14055160_SNP [dm6]	G	A	3.629e^-4	0.957	INTRON nAChRalpha5
2L	4335507	2L_4335507_SNP [dm3] 2L_4335507_SNP [dm6]	G	A	3.637e^-4	0.957	INTRON Atet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	20195556	2R_20195556_SNP [dm3] 2R_24308033_SNP [dm6]	T	G	3.639e^-4	0.957	INTRON betaTub60D	regulatory region REDfly_CRMs
2L	1628501	2L_1628501_SNP [dm3] 2L_1628501_SNP [dm6]	C	G	3.640e^-4	0.957	INTERGENIC	TF binding site mE1_TFBS_inv
2L	6937089	2L_6937089_SNP [dm3] 2L_6937089_SNP [dm6]	T	C	3.643e^-4	0.957	INTRON CG18304
2L	6937092	2L_6937092_SNP [dm3] 2L_6937092_SNP [dm6]	C	T	3.643e^-4	0.957	INTRON CG18304
2L	6937098	2L_6937098_SNP [dm3] 2L_6937098_SNP [dm6]	A	G	3.643e^-4	0.957	INTRON CG18304
2R	1291223	2R_1291223_SNP [dm3] 2R_5403718_SNP [dm6]	C	T	3.646e^-4	0.957	INTERGENIC
3L	8024424	3L_8024424_SNP [dm3] 3L_8031324_SNP [dm6]	T	C	3.646e^-4	0.957	INTRON nmo
2R	12421544	2R_12421544_SNP [dm3] 2R_16534039_SNP [dm6]	T	G	3.647e^-4	0.957	UPSTREAM loopin-1 DOWNSTREAM Sema-2a INTERGENIC
2L	12459872	2L_12459872_SNP [dm3] 2L_12459872_SNP [dm6]	G	A	3.654e^-4	0.957	DOWNSTREAM mir-967 INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	2287452	2L_2287452_SNP [dm3] 2L_2287452_SNP [dm6]	G	A	3.657e^-4	0.957	NON_SYNONYMOUS_CODING CG42658 UPSTREAM CG31681
3R	19207024	3R_19207024_SNP [dm3] 3R_23381302_SNP [dm6]	G	A	3.658e^-4	0.957	SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_chinmo
3R	19207127	3R_19207127_SNP [dm3] 3R_23381405_SNP [dm6]	A	T	3.658e^-4	0.957	INTRON CG4393	TF binding site mE1_TFBS_chinmo
2R	11665978	2R_11665978_SNP [dm3] 2R_15778473_SNP [dm6]	G	A	3.660e^-4	0.957	SYNONYMOUS_CODING Zasp52
3L	19272236	3L_19272236_SNP [dm3] 3L_19279136_SNP [dm6]	A	C	3.665e^-4	0.957	DOWNSTREAM CG14089 INTRON CG14086
2L	11607807	2L_11607807_SNP [dm3] 2L_11607807_SNP [dm6]	A	G	3.674e^-4	0.957	INTRON kek2	TF binding site mE1_TFBS_Ubx
2L	11607816	2L_11607816_SNP [dm3] 2L_11607816_SNP [dm6]	G	T	3.674e^-4	0.957	INTRON kek2	TF binding site mE1_TFBS_Ubx
2L	6936543	2L_6936543_SNP [dm3] 2L_6936543_SNP [dm6]	C	A	3.681e^-4	0.957	SYNONYMOUS_CODING CG18304	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19376435	2L_19376435_SNP [dm3] 2L_19376435_SNP [dm6]	A	C	3.683e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
X	4541308	X_4541308_SNP [dm3] X_4647275_SNP [dm6]	C	T	3.689e^-4	0.957	UPSTREAM mRpL30 INTRON HLH4C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6105874	2L_6105874_SNP [dm3] 2L_6105874_SNP [dm6]	T	C	3.698e^-4	0.957	INTRON stai
2L	20039810	2L_20039810_SNP [dm3] 2L_20039810_SNP [dm6]	T	C	3.699e^-4	0.957	INTRON sNPF
2L	20039834	2L_20039834_SNP [dm3] 2L_20039834_SNP [dm6]	C	T	3.699e^-4	0.957	INTRON sNPF
2L	13024147	2L_13024147_SNP [dm3] 2L_13024147_SNP [dm6]	T	C	3.701e^-4	0.957	NON_SYNONYMOUS_CODING CG9932	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5655680	2L_5655680_SNP [dm3] 2L_5655680_SNP [dm6]	C	G	3.707e^-4	0.957	INTRON CG31646
2R	16892796	2R_16892796_SNP [dm3] 2R_21005291_SNP [dm6]	G	A	3.709e^-4	0.957	SYNONYMOUS_CODING CG10543	TF binding site mE1_TFBS_cad
2L	9885414	2L_9885414_SNP [dm3] 2L_9885414_SNP [dm6]	C	A	3.712e^-4	0.957	INTRON nAChRalpha6
3L	1557266	3L_1557266_SNP [dm3] 3L_1557266_SNP [dm6]	A	C	3.719e^-4	0.957	SYNONYMOUS_CODING CG12099 UPSTREAM Pex10	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1658873	2L_1658873_INS [dm3] 2L_1658873_INS [dm6]	C	CTATGTAT	3.720e^-4	0.957	INTRON chinmo	TF binding site mE1_TFBS_Trl
X	2224660	X_2224660_SNP [dm3] X_2330627_SNP [dm6]	C	G	3.728e^-4	0.957	DOWNSTREAM Ilp6 INTRON phl EXON CR33218
3R	10438509	3R_10438509_SNP [dm3] 3R_14612787_SNP [dm6]	G	T	3.739e^-4	0.957	INTRON CG14853
X	10012530	X_10012530_SNP [dm3] X_10118497_SNP [dm6]	T	C	3.749e^-4	0.957	INTRON RhoU & 1 other
X	10012533	X_10012533_DEL [dm3] X_10118500_DEL [dm6]	TGG	CA	3.749e^-4	0.957	INTRON RhoU & 1 other
2R	17877171	2R_17877171_SNP [dm3] 2R_21989666_SNP [dm6]	C	T	3.755e^-4	0.957	SYNONYMOUS_CODING CG34370	TF binding site mE1_TFBS_cad
2R	17975478	2R_17975478_SNP [dm3] 2R_22087973_SNP [dm6]	C	A	3.773e^-4	0.957	UPSTREAM CG13502 INTRON CG13502
3R	17263323	3R_17263323_SNP [dm3] 3R_21437601_SNP [dm6]	A	T	3.776e^-4	0.957	UPSTREAM CR44089 INTERGENIC
2L	5964528	2L_5964528_SNP [dm3] 2L_5964528_SNP [dm6]	G	A	3.778e^-4	0.957	UPSTREAM psd DOWNSTREAM CG13992 INTRON psd	TF binding site mE1_TFBS_cad
2L	4351066	2L_4351066_SNP [dm3] 2L_4351066_SNP [dm6]	C	T	3.784e^-4	0.957	EXON CR44700	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	5070878	2L_5070878_DEL [dm3] 2L_5070878_DEL [dm6]	AGGA	A	3.789e^-4	0.957	UPSTREAM RpL37A DOWNSTREAM CR45305 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
2L	5070901	2L_5070901_SNP [dm3] 2L_5070901_SNP [dm6]	A	T	3.789e^-4	0.957	UPSTREAM RpL37A DOWNSTREAM qtc EXON CR45305	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
2L	5965924	2L_5965924_SNP [dm3] 2L_5965924_SNP [dm6]	A	G	3.793e^-4	0.957	SYNONYMOUS_CODING CG13992 UPSTREAM psd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2171208	3L_2171208_SNP [dm3] 3L_2171208_SNP [dm6]	A	T	3.795e^-4	0.957	UPSTREAM CG5704 DOWNSTREAM CR15821 INTERGENIC
3L	9993399	3L_9993399_INS [dm3] 3L_10000299_INS [dm6]	G	GTG	3.815e^-4	0.957	INTRON dpr6
2L	3599987	2L_3599987_SNP [dm3] 2L_3599987_SNP [dm6]	T	A	3.823e^-4	0.957	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8066975	3L_8066975_SNP [dm3] 3L_8073875_SNP [dm6]	T	A	3.826e^-4	0.957	UPSTREAM Ect4 INTRON Ect4	TF binding site mE1_TFBS_Trl
3L	5055837	3L_5055837_SNP [dm3] 3L_5055837_SNP [dm6]	T	G	3.836e^-4	0.957	INTRON Con
2R	11663134	2R_11663134_SNP [dm3] 2R_15775629_SNP [dm6]	T	A	3.840e^-4	0.957	INTRON Zasp52	TF binding site mE1_TFBS_chinmo
3L	13879343	3L_13879343_SNP [dm3] 3L_13886243_SNP [dm6]	G	A	3.850e^-4	0.957	SYNONYMOUS_CODING dysc	TF binding site mE1_TFBS_cad
3L	21911625	3L_21911625_SNP [dm3] 3L_21918525_SNP [dm6]	C	T	3.859e^-4	0.957	INTRON mub
2R	14228119	2R_14228119_SNP [dm3] 2R_18340614_SNP [dm6]	C	A	3.860e^-4	0.957	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9876554	2L_9876554_SNP [dm3] 2L_9876554_SNP [dm6]	A	T	3.863e^-4	0.957	INTRON nAChRalpha6
2L	15964421	2L_15964421_SNP [dm3] 2L_15964421_SNP [dm6]	T	C	3.875e^-4	0.957	INTERGENIC
2R	14531701	2R_14531701_INS [dm3] 2R_18644196_INS [dm6]	A	ACTGATA	3.876e^-4	0.957	INTRON SP2637
2R	12418549	2R_12418549_SNP [dm3] 2R_16531044_SNP [dm6]	G	A	3.880e^-4	0.957	SYNONYMOUS_CODING Sema-2a	TF binding site BDTNP1_TFBS_twi
X	2286409	X_2286409_SNP [dm3] X_2392376_SNP [dm6]	C	A	3.899e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6749719	2L_6749719_SNP [dm3] 2L_6749719_SNP [dm6]	C	A	3.912e^-4	0.957	INTRON CG11221
3R	22309334	3R_22309334_SNP [dm3] 3R_26483612_SNP [dm6]	G	T	3.920e^-4	0.957	INTRON plum
2L	11148079	2L_11148079_SNP [dm3] 2L_11148079_SNP [dm6]	C	A	3.921e^-4	0.957	INTRON Gyc32E
2R	9695110	2R_9695110_SNP [dm3] 2R_13807605_SNP [dm6]	G	A	3.937e^-4	0.957	INTRON stj
2L	14880927	2L_14880927_SNP [dm3] 2L_14880927_SNP [dm6]	T	G	3.939e^-4	0.957	INTRON Mst35Ba
2R	17656394	2R_17656394_SNP [dm3] 2R_21768889_SNP [dm6]	C	A	3.956e^-4	0.957	SPLICE_SITE_REGION CG30395 INTRON CG30395
3L	7178185	3L_7178185_SNP [dm3] 3L_7185085_SNP [dm6]	G	T	3.956e^-4	0.957	INTRON Dscam2
X	9285453	X_9285453_SNP [dm3] X_9391420_SNP [dm6]	C	G	3.963e^-4	0.957	INTRON mgl
X	9285466	X_9285466_SNP [dm3] X_9391433_SNP [dm6]	C	T	3.963e^-4	0.957	INTRON mgl
2R	6058316	2R_6058316_SNP [dm3] 2R_10170811_SNP [dm6]	T	C	3.967e^-4	0.957	INTRON KCNQ
2L	1318119	2L_1318119_SNP [dm3] 2L_1318119_SNP [dm6]	C	A	3.972e^-4	0.957	INTERGENIC
2L	1318144	2L_1318144_SNP [dm3] 2L_1318144_SNP [dm6]	T	C	3.972e^-4	0.957	INTERGENIC
2L	20100094	2L_20100094_SNP [dm3] 2L_20100094_SNP [dm6]	C	A	3.972e^-4	0.957	INTRON Kua
2L	6452518	2L_6452518_SNP [dm3] 2L_6452518_SNP [dm6]	A	G	3.983e^-4	0.957	SYNONYMOUS_CODING retm	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12289097	2L_12289097_SNP [dm3] 2L_12289097_SNP [dm6]	C	G	3.984e^-4	0.957	UTR_5_PRIME aret INTRON aret	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	12450619	3R_12450619_SNP [dm3] 3R_16624897_SNP [dm6]	C	T	4.008e^-4	0.957	UPSTREAM Fas1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu
2L	6938754	2L_6938754_SNP [dm3] 2L_6938754_SNP [dm6]	G	T	4.015e^-4	0.957	SYNONYMOUS_CODING CG18304	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	3069892	3R_3069892_SNP [dm3] 3R_7244170_SNP [dm6]	G	T	4.015e^-4	0.957	DOWNSTREAM CG1234 & 1 other INTERGENIC
X	16347855	X_16347855_SNP [dm3] X_16453822_SNP [dm6]	T	C	4.026e^-4	0.957	UTR_3_PRIME Rbp2 DOWNSTREAM Rbp2
2L	7903439	2L_7903439_SNP [dm3] 2L_7903439_SNP [dm6]	C	G	4.030e^-4	0.957	INTRON Snoo
2L	10325507	2L_10325507_SNP [dm3] 2L_10325507_SNP [dm6]	G	A	4.030e^-4	0.957	SYNONYMOUS_CODING RnrL DOWNSTREAM CG4995
3L	2747403	3L_2747403_DEL [dm3] 3L_2747403_DEL [dm6]	AA	G	4.030e^-4	0.957	INTRON Mrtf
2L	20039812	2L_20039812_SNP [dm3] 2L_20039812_SNP [dm6]	A	C	4.040e^-4	0.957	INTRON sNPF
2L	20039823	2L_20039823_SNP [dm3] 2L_20039823_SNP [dm6]	G	A	4.040e^-4	0.957	INTRON sNPF
3R	25801782	3R_25801782_SNP [dm3] 3R_29976060_SNP [dm6]	G	A	4.049e^-4	0.957	INTERGENIC
2R	6392352	2R_6392352_SNP [dm3] 2R_10504847_SNP [dm6]	G	T	4.056e^-4	0.957	DOWNSTREAM lola INTRON lola	TF binding site mE1_TFBS_HSA
2L	12106057	2L_12106057_SNP [dm3] 2L_12106057_SNP [dm6]	T	C	4.064e^-4	0.957	SYNONYMOUS_CODING Aats-thr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	12700488	X_12700488_SNP [dm3] X_12806455_SNP [dm6]	G	A	4.067e^-4	0.957	INTRON Pde9	TF binding site BDTNP1_TFBS_twi
3R	16295356	3R_16295356_SNP [dm3] 3R_20469634_SNP [dm6]	T	A	4.068e^-4	0.957	INTRON Gfrl
2L	10116962	2L_10116962_SNP [dm3] 2L_10116962_SNP [dm6]	G	C	4.080e^-4	0.957	INTRON CG44153 & 1 other
X	4473857	X_4473857_SNP [dm3] X_4579824_SNP [dm6]	G	A	4.083e^-4	0.957	INTRON CR32773
2R	12073958	2R_12073958_SNP [dm3] 2R_16186453_SNP [dm6]	A	T	4.086e^-4	0.957	UTR_5_PRIME CG8441 UPSTREAM clu & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Ubx
2L	9830465	2L_9830465_SNP [dm3] 2L_9830465_SNP [dm6]	T	C	4.086e^-4	0.957	INTRON nAChRalpha6
2L	11452395	2L_11452395_SNP [dm3] 2L_11452395_SNP [dm6]	C	A	4.087e^-4	0.957	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	13715594	2L_13715594_SNP [dm3] 2L_13715594_SNP [dm6]	T	C	4.090e^-4	0.957	INTRON CG31814
2R	19935682	2R_19935682_SNP [dm3] 2R_24048159_SNP [dm6]	G	A	4.100e^-4	0.957	SYNONYMOUS_CODING gammaSnap1 INTRON sei	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	15108683	X_15108683_SNP [dm3] X_15214650_SNP [dm6]	G	A	4.107e^-4	0.957	INTERGENIC
3L	10378998	3L_10378998_INS [dm3] 3L_10385898_INS [dm6]	A	AA	4.118e^-4	0.957	UPSTREAM CR45245 INTERGENIC
X	2284466	X_2284466_SNP [dm3] X_2390433_SNP [dm6]	A	C	4.122e^-4	0.957	INTERGENIC
2R	14269526	2R_14269526_SNP [dm3] 2R_18382021_SNP [dm6]	A	T	4.125e^-4	0.957	UPSTREAM CG43202 DOWNSTREAM IM23 INTERGENIC
3R	22100509	3R_22100509_SNP [dm3] 3R_26274787_SNP [dm6]	A	G	4.130e^-4	0.957	SYNONYMOUS_CODING CG6154
2R	14761328	2R_14761328_SNP [dm3] 2R_18873823_SNP [dm6]	T	A	4.131e^-4	0.957	INTERGENIC
2R	19643339	2R_19643339_SNP [dm3] 2R_23755816_SNP [dm6]	T	G	4.131e^-4	0.957	SYNONYMOUS_CODING CG9850 INTRON CG9850
3L	1190231	3L_1190231_SNP [dm3] 3L_1190231_SNP [dm6]	C	T	4.131e^-4	0.957	SYNONYMOUS_CODING CG13912 DOWNSTREAM Trh	TF binding site mE1_TFBS_cad
2R	7608325	2R_7608325_SNP [dm3] 2R_11720820_SNP [dm6]	C	G	4.132e^-4	0.957	INTRON pyr
X	4467423	X_4467423_DEL [dm3] X_4573390_DEL [dm6]	GAACTG	G	4.136e^-4	0.957	INTRON CR32773
2L	1795609	2L_1795609_SNP [dm3] 2L_1795609_SNP [dm6]	A	C	4.137e^-4	0.957	UPSTREAM Gr22a INTERGENIC
2L	11377994	2L_11377994_SNP [dm3] 2L_11377994_SNP [dm6]	G	C	4.137e^-4	0.957	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	9466013	2R_9466013_SNP [dm3] 2R_13578508_SNP [dm6]	T	C	4.154e^-4	0.957	DOWNSTREAM CR44365 EXON CR44366	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19380654	2L_19380654_SNP [dm3] 2L_19380654_SNP [dm6]	A	T	4.156e^-4	0.957	UPSTREAM CG17350 INTERGENIC
2L	7913966	2L_7913966_SNP [dm3] 2L_7913966_SNP [dm6]	C	T	4.169e^-4	0.957	INTRON Snoo
2R	15113315	2R_15113315_SNP [dm3] 2R_19225810_SNP [dm6]	T	C	4.173e^-4	0.957	INTRON hppy	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18861951	2R_18861951_SNP [dm3] 2R_22974428_SNP [dm6]	T	A	4.182e^-4	0.957	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	5222730	X_5222730_SNP [dm3] X_5328697_SNP [dm6]	A	G	4.189e^-4	0.957	SYNONYMOUS_CODING CG3309	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2120162	3L_2120162_SNP [dm3] 3L_2120162_SNP [dm6]	C	A	4.196e^-4	0.957	INTRON zormin
2L	10230048	2L_10230048_SNP [dm3] 2L_10230048_SNP [dm6]	C	T	4.202e^-4	0.957	INTRON CG5694	TF binding site BDTNP1_TFBS_dl
3L	3552107	3L_3552107_SNP [dm3] 3L_3552107_SNP [dm6]	G	A	4.210e^-4	0.957	INTRON Eip63E
2L	8719298	2L_8719298_SNP [dm3] 2L_8719298_SNP [dm6]	A	G	4.221e^-4	0.957	INTRON raw
3R	23414183	3R_23414183_SNP [dm3] 3R_27588461_SNP [dm6]	T	C	4.230e^-4	0.957	SYNONYMOUS_CODING CG5639	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	22538640	3L_22538640_SNP [dm3] 3L_22545540_SNP [dm6]	C	T	4.230e^-4	0.957	INTERGENIC
3L	5080040	3L_5080040_SNP [dm3] 3L_5080040_SNP [dm6]	A	G	4.242e^-4	0.957	INTERGENIC
3L	5080046	3L_5080046_SNP [dm3] 3L_5080046_SNP [dm6]	G	A	4.242e^-4	0.957	INTERGENIC
2L	6189315	2L_6189315_SNP [dm3] 2L_6189315_SNP [dm6]	G	A	4.247e^-4	0.957	INTRON CG34380	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	10819043	2L_10819043_SNP [dm3] 2L_10819043_SNP [dm6]	T	G	4.261e^-4	0.957	UPSTREAM CG6508 INTRON Nos
2R	18533793	2R_18533793_SNP [dm3] 2R_22646288_SNP [dm6]	A	G	4.274e^-4	0.957	UTR_5_PRIME CG2852 DOWNSTREAM CG30195	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3R	17666230	3R_17666230_SNP [dm3] 3R_21840508_SNP [dm6]	G	A	4.284e^-4	0.957	INTERGENIC
2L	9865357	2L_9865357_SNP [dm3] 2L_9865357_SNP [dm6]	A	C	4.284e^-4	0.957	INTRON nAChRalpha6
2L	6943607	2L_6943607_SNP [dm3] 2L_6943607_SNP [dm6]	C	T	4.296e^-4	0.957	UTR_3_PRIME CG10158 UPSTREAM CG18304 DOWNSTREAM CG10158
3L	8913324	3L_8913324_SNP [dm3] 3L_8920224_SNP [dm6]	C	T	4.318e^-4	0.957	INTRON Tsp66E
2L	5153746	2L_5153746_SNP [dm3] 2L_5153746_SNP [dm6]	T	A	4.327e^-4	0.957	INTRON Msp300
2L	4258184	2L_4258184_SNP [dm3] 2L_4258184_SNP [dm6]	A	G	4.342e^-4	0.957	UPSTREAM CR45296 INTRON CG15425
3L	13065546	3L_13065546_SNP [dm3] 3L_13072446_SNP [dm6]	G	C	4.354e^-4	0.957	INTERGENIC
3L	13065606	3L_13065606_SNP [dm3] 3L_13072506_SNP [dm6]	C	G	4.354e^-4	0.957	INTERGENIC
3L	3864811	3L_3864811_SNP [dm3] 3L_3864811_SNP [dm6]	C	G	4.354e^-4	0.957	UPSTREAM CR45379 INTERGENIC
3R	6972377	3R_6972377_SNP [dm3] 3R_11146655_SNP [dm6]	A	G	4.354e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	6975168	3R_6975168_SNP [dm3] 3R_11149446_SNP [dm6]	G	A	4.354e^-4	0.957	INTERGENIC
2R	18477096	2R_18477096_SNP [dm3] 2R_22589591_SNP [dm6]	T	C	4.380e^-4	0.957	INTRON dnr1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	9618672	X_9618672_SNP [dm3] X_9724639_SNP [dm6]	C	T	4.389e^-4	0.957	INTERGENIC
X	8725112	X_8725112_INS [dm3] X_8831079_INS [dm6]	T	TTA	4.392e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7907200	2L_7907200_SNP [dm3] 2L_7907200_SNP [dm6]	T	G	4.397e^-4	0.957	INTRON Snoo	TF binding site mE1_TFBS_sbb
2R	12379912	2R_12379912_SNP [dm3] 2R_16492407_SNP [dm6]	T	C	4.404e^-4	0.957	SYNONYMOUS_CODING S-Lap8	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11368944	2L_11368944_SNP [dm3] 2L_11368944_SNP [dm6]	G	A	4.412e^-4	0.957	NON_SYNONYMOUS_CODING salr	TF binding site mE1_TFBS_cad
2L	21892710	2L_21892710_DEL [dm3] 2L_21892710_DEL [dm6]	ATTAT	TC	4.423e^-4	0.957	INTERGENIC
3R	23798631	3R_23798631_SNP [dm3] 3R_27972909_SNP [dm6]	T	A	4.427e^-4	0.957	INTRON betaTub97EF
2L	12745638	2L_12745638_SNP [dm3] 2L_12745638_SNP [dm6]	A	G	4.432e^-4	0.957	DOWNSTREAM MRP INTERGENIC	TF binding site mE1_TFBS_inv
3L	12537462	3L_12537462_INS [dm3] 3L_12544362_INS [dm6]	A	AGC	4.441e^-4	0.957	INTRON sowah	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8977892	2L_8977892_SNP [dm3] 2L_8977892_SNP [dm6]	C	T	4.443e^-4	0.957	UTR_3_PRIME CG13101 DOWNSTREAM CG13101
3L	15889806	3L_15889806_SNP [dm3] 3L_15896706_SNP [dm6]	T	A	4.445e^-4	0.957	INTRON pHCl
2L	7051312	2L_7051312_SNP [dm3] 2L_7051312_SNP [dm6]	T	C	4.449e^-4	0.957	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3R	13145435	3R_13145435_SNP [dm3] 3R_17319713_SNP [dm6]	T	A	4.449e^-4	0.957	DOWNSTREAM beat-IIa INTERGENIC
3R	17913746	3R_17913746_DEL [dm3] 3R_22088024_DEL [dm6]	CACTGCGAGC	C	4.455e^-4	0.957	DOWNSTREAM CG5791 INTRON CG5778
2L	6105895	2L_6105895_SNP [dm3] 2L_6105895_SNP [dm6]	G	C	4.458e^-4	0.957	INTRON stai
X	4467817	X_4467817_SNP [dm3] X_4573784_SNP [dm6]	T	A	4.470e^-4	0.957	INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	13659428	2R_13659428_SNP [dm3] 2R_17771923_SNP [dm6]	G	A	4.472e^-4	0.957	SYNONYMOUS_CODING CG6362	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14440110	3L_14440110_DEL [dm3] 3L_14447010_DEL [dm6]	GG	G	4.477e^-4	0.957	INTRON bbg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2L	10102232	2L_10102232_SNP [dm3] 2L_10102232_SNP [dm6]	G	C	4.478e^-4	0.957	INTRON CG44153 & 1 other
2R	9743488	2R_9743488_SNP [dm3] 2R_13855983_SNP [dm6]	G	A	4.482e^-4	0.957	UPSTREAM CG6553 DOWNSTREAM tum & 1 other INTERGENIC
2R	17237225	2R_17237225_SNP [dm3] 2R_21349720_SNP [dm6]	A	G	4.486e^-4	0.957	SYNONYMOUS_CODING CG17974
2R	13995330	2R_13995330_SNP [dm3] 2R_18107825_SNP [dm6]	A	T	4.504e^-4	0.957	INTRON CG5756
2R	13995333	2R_13995333_SNP [dm3] 2R_18107828_SNP [dm6]	T	A	4.504e^-4	0.957	INTRON CG5756
X	2399750	X_2399750_SNP [dm3] X_2505717_SNP [dm6]	C	G	4.506e^-4	0.957	UPSTREAM trol INTRON trol	TF binding site mE1_TFBS_cad
3R	13086098	3R_13086098_SNP [dm3] 3R_17260376_SNP [dm6]	T	A	4.520e^-4	0.957	INTRON beat-IIb
3R	10139708	3R_10139708_SNP [dm3] 3R_14313986_SNP [dm6]	T	A	4.524e^-4	0.957	UPSTREAM Crz INTRON CG31321
3R	10139719	3R_10139719_SNP [dm3] 3R_14313997_SNP [dm6]	T	A	4.524e^-4	0.957	UPSTREAM Crz INTRON CG31321
2L	5958304	2L_5958304_SNP [dm3] 2L_5958304_SNP [dm6]	G	A	4.524e^-4	0.957	SYNONYMOUS_CODING Vm26Ac DOWNSTREAM Vm26Ab	TF binding site mE1_TFBS_cad
3L	16692064	3L_16692064_SNP [dm3] 3L_16698964_SNP [dm6]	T	A	4.536e^-4	0.957	INTRON Lasp & 1 other
3R	22573603	3R_22573603_SNP [dm3] 3R_26747881_SNP [dm6]	G	A	4.558e^-4	0.957	INTERGENIC
2R	12799905	2R_12799905_SNP [dm3] 2R_16912400_SNP [dm6]	C	T	4.563e^-4	0.957	INTERGENIC
2R	2036857	2R_2036857_SNP [dm3] 2R_6149352_SNP [dm6]	A	G	4.563e^-4	0.957	INTRON EcR
3R	3891806	3R_3891806_SNP [dm3] 3R_8066084_SNP [dm6]	C	T	4.564e^-4	0.957	INTRON mAChR-B
3R	14165885	3R_14165885_SNP [dm3] 3R_18340163_SNP [dm6]	G	A	4.575e^-4	0.957	INTRON CG15803
3L	1557059	3L_1557059_SNP [dm3] 3L_1557059_SNP [dm6]	A	G	4.577e^-4	0.957	SYNONYMOUS_CODING CG12099	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10788070	3R_10788070_SNP [dm3] 3R_14962348_SNP [dm6]	T	C	4.578e^-4	0.957	INTERGENIC
3R	10437843	3R_10437843_SNP [dm3] 3R_14612121_SNP [dm6]	A	C	4.589e^-4	0.957	INTRON CG14853
2L	10111037	2L_10111037_SNP [dm3] 2L_10111037_SNP [dm6]	G	A	4.596e^-4	0.957	SYNONYMOUS_CODING CG34109 INTRON CG44153
X	22406506	X_22406506_SNP [dm3] X_23004670_SNP [dm6]	G	T	4.599e^-4	0.957	UPSTREAM stnA & 1 other INTERGENIC
3L	1725049	3L_1725049_SNP [dm3] 3L_1725049_SNP [dm6]	T	C	4.600e^-4	0.957	SYNONYMOUS_CODING CG12035 INTRON drpr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	15560718	X_15560718_SNP [dm3] X_15666685_SNP [dm6]	G	A	4.623e^-4	0.957	UPSTREAM CR43299 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA transposable element FlyBase
3R	5807118	3R_5807118_SNP [dm3] 3R_9981396_SNP [dm6]	C	T	4.626e^-4	0.957	INTRON Glut4EF
2L	7087964	2L_7087964_SNP [dm3] 2L_7087964_SNP [dm6]	C	A	4.627e^-4	0.957	INTERGENIC
2R	19609949	2R_19609949_SNP [dm3] 2R_23722426_SNP [dm6]	T	C	4.633e^-4	0.957	UTR_5_PRIME Sesn INTRON Sesn
X	16148818	X_16148818_SNP [dm3] X_16254785_SNP [dm6]	A	G	4.637e^-4	0.957	UPSTREAM snRNA:U5:14B EXON snRNA:U2:14B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8718965	2L_8718965_SNP [dm3] 2L_8718965_SNP [dm6]	G	A	4.642e^-4	0.957	INTRON raw	TF binding site mE1_TFBS_Trl
2R	9210360	2R_9210360_SNP [dm3] 2R_13322855_SNP [dm6]	C	G	4.645e^-4	0.957	INTERGENIC
2R	19905659	2R_19905659_SNP [dm3] 2R_24018136_SNP [dm6]	T	C	4.649e^-4	0.957	UPSTREAM CG4324 INTRON CG3121	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2L	20394777	2L_20394777_SNP [dm3] 2L_20394777_SNP [dm6]	T	C	4.664e^-4	0.957	INTRON CG10947
2L	8970401	2L_8970401_SNP [dm3] 2L_8970401_SNP [dm6]	T	C	4.682e^-4	0.957	UTR_3_PRIME CG18088 DOWNSTREAM CG9541 & 1 other
2L	14691295	2L_14691295_SNP [dm3] 2L_14691295_SNP [dm6]	C	G	4.684e^-4	0.957	INTERGENIC
3L	13352395	3L_13352395_SNP [dm3] 3L_13359295_SNP [dm6]	G	T	4.685e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20617793	3L_20617793_SNP [dm3] 3L_20624693_SNP [dm6]	T	C	4.691e^-4	0.957	UPSTREAM CR44684 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19738601	2R_19738601_SNP [dm3] 2R_23851078_SNP [dm6]	T	A	4.704e^-4	0.957	UPSTREAM eIF6 & 2 others INTRON ytr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2R	10250009	2R_10250009_SNP [dm3] 2R_14362504_SNP [dm6]	G	T	4.707e^-4	0.957	SYNONYMOUS_CODING Arc2 UPSTREAM CR10102 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	24884308	3R_24884308_SNP [dm3] 3R_29058586_SNP [dm6]	A	G	4.714e^-4	0.957	SYNONYMOUS_CODING Sirt7 DOWNSTREAM Cul5
2L	2665940	2L_2665940_SNP [dm3] 2L_2665940_SNP [dm6]	T	C	4.717e^-4	0.957	SYNONYMOUS_CODING CG9879
3R	26098491	3R_26098491_SNP [dm3] 3R_30272769_SNP [dm6]	A	T	4.718e^-4	0.957	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10107449	2L_10107449_SNP [dm3] 2L_10107449_SNP [dm6]	C	T	4.734e^-4	0.957	SYNONYMOUS_CODING CG34109 INTRON CG44153
3R	22733607	3R_22733607_SNP [dm3] 3R_26907885_SNP [dm6]	C	A	4.735e^-4	0.957	INTRON T48
2R	5667793	2R_5667793_INS [dm3] 2R_9780288_INS [dm6]	G	GACG	4.740e^-4	0.957	INTRON CG1688
X	6636872	X_6636872_SNP [dm3] X_6742839_SNP [dm6]	C	A	4.751e^-4	0.957	UPSTREAM snoRNA:Psi28S-3436b & 1 other DOWNSTREAM snoRNA:Psi28S-1060 & 1 other INTRON RpL17
3R	3815826	3R_3815826_SNP [dm3] 3R_7990104_SNP [dm6]	T	A	4.751e^-4	0.957	INTRON CG2781
3L	14152745	3L_14152745_SNP [dm3] 3L_14159645_SNP [dm6]	T	C	4.758e^-4	0.957	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	13204534	3L_13204534_SNP [dm3] 3L_13211434_SNP [dm6]	T	G	4.774e^-4	0.957	UPSTREAM tRNA:CR32128 & 1 other DOWNSTREAM tRNA:CR32129 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	22072953	X_22072953_SNP [dm3] X_22671117_SNP [dm6]	C	T	4.776e^-4	0.957	INTRON CR44997
2L	7207041	2L_7207041_SNP [dm3] 2L_7207041_SNP [dm6]	A	G	4.796e^-4	0.957	SYNONYMOUS_CODING CG13784 UTR_3_PRIME CG13784	TF binding site mE1_TFBS_sens
3R	2703903	3R_2703903_SNP [dm3] 3R_6878181_SNP [dm6]	A	G	4.802e^-4	0.957	INTRON CR44931	regulatory region FlyBase REDfly_CRMs
2L	9827466	2L_9827466_SNP [dm3] 2L_9827466_SNP [dm6]	A	G	4.825e^-4	0.957	INTRON nAChRalpha6
2L	3730373	2L_3730373_SNP [dm3] 2L_3730373_SNP [dm6]	G	T	4.848e^-4	0.957	UPSTREAM CG10019 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	20227806	X_20227806_SNP [dm3] X_20356779_SNP [dm6]	G	A	4.850e^-4	0.957	INTERGENIC
X	2536657	X_2536657_SNP [dm3] X_2642624_SNP [dm6]	C	T	4.861e^-4	0.957	UPSTREAM sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	17976741	3L_17976741_SNP [dm3] 3L_17983641_SNP [dm6]	T	A	4.864e^-4	0.957	INTRON Eip75B
2L	11777302	2L_11777302_SNP [dm3] 2L_11777302_SNP [dm6]	G	T	4.873e^-4	0.957	INTERGENIC
3R	10716672	3R_10716672_SNP [dm3] 3R_14890950_SNP [dm6]	G	T	4.886e^-4	0.957	UPSTREAM CycC INTRON CG3731	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_sens
2R	2493462	2R_2493462_SNP [dm3] 2R_6605957_SNP [dm6]	A	G	4.893e^-4	0.957	INTRON jing	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	8913232	2L_8913232_SNP [dm3] 2L_8913232_SNP [dm6]	T	G	4.893e^-4	0.957	INTRON CG34398
2R	12754723	2R_12754723_SNP [dm3] 2R_16867218_SNP [dm6]	T	G	4.897e^-4	0.957	NON_SYNONYMOUS_CODING Psi UTR_5_PRIME Psi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_inv
2L	7264185	2L_7264185_SNP [dm3] 2L_7264185_SNP [dm6]	C	T	4.910e^-4	0.957	INTRON Wnt4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8066976	3L_8066976_SNP [dm3] 3L_8073876_SNP [dm6]	T	A	4.920e^-4	0.957	UPSTREAM Ect4 INTRON Ect4	TF binding site mE1_TFBS_Trl
3R	24465291	3R_24465291_SNP [dm3] 3R_28639569_SNP [dm6]	G	T	4.921e^-4	0.957	DOWNSTREAM CG9988 INTERGENIC
2R	11389957	2R_11389957_SNP [dm3] 2R_15502452_SNP [dm6]	C	T	4.923e^-4	0.957	SYNONYMOUS_CODING Ir52b
3L	21106194	3L_21106194_SNP [dm3] 3L_21113094_SNP [dm6]	C	A	4.924e^-4	0.957	INTRON ko	regulatory region REDfly_CRMs
3L	8255890	3L_8255890_SNP [dm3] 3L_8262790_SNP [dm6]	G	T	4.936e^-4	0.957	INTRON Dscam4
2L	10325489	2L_10325489_SNP [dm3] 2L_10325489_SNP [dm6]	T	G	4.943e^-4	0.957	SYNONYMOUS_CODING RnrL DOWNSTREAM CG4995
3R	2090975	3R_2090975_SNP [dm3] 3R_6265253_SNP [dm6]	C	T	4.944e^-4	0.957	SYNONYMOUS_CODING Osi10
2R	14414107	2R_14414107_SNP [dm3] 2R_18526602_SNP [dm6]	C	G	4.951e^-4	0.957	UPSTREAM CG10924 DOWNSTREAM CG43066 INTERGENIC
2R	19828668	2R_19828668_SNP [dm3] 2R_23941145_SNP [dm6]	C	T	4.951e^-4	0.957	SYNONYMOUS_CODING Tal	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	5637349	2L_5637349_SNP [dm3] 2L_5637349_SNP [dm6]	T	C	4.957e^-4	0.957	INTRON CG31646
3R	8472399	3R_8472399_SNP [dm3] 3R_12646677_SNP [dm6]	T	A	4.965e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	15971533	2R_15971533_SNP [dm3] 2R_20084028_SNP [dm6]	C	G	4.970e^-4	0.957	UPSTREAM CR44632 INTERGENIC
2L	20136741	2L_20136741_SNP [dm3] 2L_20136741_SNP [dm6]	G	T	4.977e^-4	0.957	INTERGENIC
2L	9872345	2L_9872345_SNP [dm3] 2L_9872345_SNP [dm6]	T	A	5.002e^-4	0.957	INTRON nAChRalpha6
3R	6511579	3R_6511579_SNP [dm3] 3R_10685857_SNP [dm6]	G	T	5.007e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	23486270	3R_23486270_DEL [dm3] 3R_27660548_DEL [dm6]	TT	T	5.015e^-4	0.957	UPSTREAM Mlc1 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	9808372	2L_9808372_SNP [dm3] 2L_9808372_SNP [dm6]	C	A	5.021e^-4	0.957	INTRON nAChRalpha6
3L	11221645	3L_11221645_SNP [dm3] 3L_11228545_SNP [dm6]	C	T	5.022e^-4	0.957	UTR_3_PRIME CG42671 INTRON CG42671
2R	12701588	2R_12701588_SNP [dm3] 2R_16814083_SNP [dm6]	T	A	5.023e^-4	0.957	DOWNSTREAM CR44380 INTERGENIC
2L	7098833	2L_7098833_SNP [dm3] 2L_7098833_SNP [dm6]	C	A	5.033e^-4	0.957	UTR_3_PRIME Pvf3 DOWNSTREAM Pvf3
2L	8334930	2L_8334930_SNP [dm3] 2L_8334930_SNP [dm6]	C	A	5.036e^-4	0.957	INTERGENIC
3L	15895339	3L_15895339_SNP [dm3] 3L_15902239_SNP [dm6]	T	A	5.038e^-4	0.957	UTR_3_PRIME sff
3R	17381198	3R_17381198_SNP [dm3] 3R_21555476_SNP [dm6]	A	G	5.039e^-4	0.957	INTRON slou
2L	3427536	2L_3427536_SNP [dm3] 2L_3427536_SNP [dm6]	G	T	5.049e^-4	0.957	UPSTREAM pgant2 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	20599523	2R_20599523_SNP [dm3] 2R_24712000_SNP [dm6]	T	A	5.049e^-4	0.957	INTRON Mid1
X	5265111	X_5265111_DEL [dm3] X_5371078_DEL [dm6]	GTGCGCTG	G	5.053e^-4	0.957	INTRON SK
X	4361594	X_4361594_SNP [dm3] X_4467561_SNP [dm6]	G	A	5.060e^-4	0.957	INTRON bi & 1 other	TF binding site mE1_TFBS_chinmo
3R	17878162	3R_17878162_SNP [dm3] 3R_22052440_SNP [dm6]	A	T	5.061e^-4	0.957	INTRON how	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	7295624	2R_7295624_SNP [dm3] 2R_11408119_SNP [dm6]	A	C	5.071e^-4	0.957	DOWNSTREAM CG30026 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
3L	3150460	3L_3150460_SNP [dm3] 3L_3150460_SNP [dm6]	G	T	5.081e^-4	0.957	SYNONYMOUS_CODING BtbVII	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	12214984	X_12214984_SNP [dm3] X_12320951_SNP [dm6]	C	A	5.083e^-4	0.957	INTRON Ten-a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2240071	2L_2240071_SNP [dm3] 2L_2240071_SNP [dm6]	G	A	5.094e^-4	0.957	SYNONYMOUS_CODING Tengl1 UPSTREAM Tengl2
2R	14082838	2R_14082838_SNP [dm3] 2R_18195333_SNP [dm6]	C	A	5.115e^-4	0.957	INTERGENIC
3L	427785	3L_427785_SNP [dm3] 3L_427785_SNP [dm6]	T	C	5.118e^-4	0.957	INTERGENIC
3L	12224492	3L_12224492_SNP [dm3] 3L_12231392_SNP [dm6]	T	C	5.126e^-4	0.957	INTRON app
2L	3791169	2L_3791169_SNP [dm3] 2L_3791169_SNP [dm6]	G	A	5.134e^-4	0.957	INTRON CG3921
2L	9368514	2L_9368514_SNP [dm3] 2L_9368514_SNP [dm6]	T	C	5.140e^-4	0.957	DOWNSTREAM CG34181 INTERGENIC
2R	14531614	2R_14531614_SNP [dm3] 2R_18644109_SNP [dm6]	G	C	5.143e^-4	0.957	INTRON SP2637
2R	14531650	2R_14531650_SNP [dm3] 2R_18644145_SNP [dm6]	T	A	5.143e^-4	0.957	INTRON SP2637
2R	14228885	2R_14228885_SNP [dm3] 2R_18341380_SNP [dm6]	C	T	5.149e^-4	0.957	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	3882300	2L_3882300_SNP [dm3] 2L_3882300_SNP [dm6]	A	G	5.151e^-4	0.957	INTRON capu
3L	20603215	3L_20603215_SNP [dm3] 3L_20610115_SNP [dm6]	C	G	5.157e^-4	0.957	INTRON knrl
3R	14171819	3R_14171819_DEL [dm3] 3R_18346097_DEL [dm6]	ATAAAGGGG	A	5.176e^-4	0.957	INTRON CG15803
3R	14171834	3R_14171834_DEL [dm3] 3R_18346112_DEL [dm6]	GT	G	5.176e^-4	0.957	INTRON CG15803
2R	12423406	2R_12423406_SNP [dm3] 2R_16535901_SNP [dm6]	C	T	5.176e^-4	0.957	SYNONYMOUS_CODING loopin-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6821350	3L_6821350_SNP [dm3] 3L_6828250_SNP [dm6]	G	A	5.177e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11648277	2L_11648277_SNP [dm3] 2L_11648277_SNP [dm6]	A	G	5.179e^-4	0.957	NON_SYNONYMOUS_CODING CG6614	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	7270631	2L_7270631_SNP [dm3] 2L_7270631_SNP [dm6]	G	A	5.180e^-4	0.957	INTRON Wnt4
X	6346777	X_6346777_SNP [dm3] X_6452744_SNP [dm6]	T	A	5.187e^-4	0.957	INTRON CG42340
X	12213727	X_12213727_SNP [dm3] X_12319694_SNP [dm6]	G	A	5.187e^-4	0.957	INTRON Ten-a
3R	17912900	3R_17912900_SNP [dm3] 3R_22087178_SNP [dm6]	C	T	5.187e^-4	0.957	START_GAINED CG5791 UTR_5_PRIME CG5791 UPSTREAM CG5778 INTRON CG5778
2R	9406247	2R_9406247_SNP [dm3] 2R_13518742_SNP [dm6]	G	A	5.195e^-4	0.957	SYNONYMOUS_CODING Vmat	TF binding site mE1_TFBS_cad
X	2670557	X_2670557_SNP [dm3] X_2776524_SNP [dm6]	A	C	5.197e^-4	0.957	INTRON kirre
3R	13067668	3R_13067668_SNP [dm3] 3R_17241946_SNP [dm6]	C	A	5.201e^-4	0.957	INTRON beat-IIb
2L	6749721	2L_6749721_SNP [dm3] 2L_6749721_SNP [dm6]	T	G	5.238e^-4	0.957	INTRON CG11221
3R	22987009	3R_22987009_SNP [dm3] 3R_27161287_SNP [dm6]	G	T	5.247e^-4	0.957	UTR_5_PRIME CG5909
3R	22987104	3R_22987104_SNP [dm3] 3R_27161382_SNP [dm6]	C	A	5.247e^-4	0.957	SYNONYMOUS_CODING CG5909
3R	22987129	3R_22987129_SNP [dm3] 3R_27161407_SNP [dm6]	T	C	5.247e^-4	0.957	INTRON CG5909
X	12206804	X_12206804_SNP [dm3] X_12312771_SNP [dm6]	C	T	5.248e^-4	0.957	INTRON Ten-a
2R	18570111	2R_18570111_SNP [dm3] 2R_22682606_SNP [dm6]	A	G	5.271e^-4	0.957	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1368319	2L_1368319_SNP [dm3] 2L_1368319_SNP [dm6]	T	A	5.279e^-4	0.957	SPLICE_SITE_REGION CG14346 INTRON CG14346	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	4381345	2L_4381345_SNP [dm3] 2L_4381345_SNP [dm6]	T	C	5.280e^-4	0.957	NON_SYNONYMOUS_CODING CG17612 DOWNSTREAM Traf4	TF binding site mE1_TFBS_sens
3R	19206526	3R_19206526_SNP [dm3] 3R_23380804_SNP [dm6]	C	T	5.286e^-4	0.957	SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_chinmo
3R	18592758	3R_18592758_SNP [dm3] 3R_22767036_SNP [dm6]	C	A	5.305e^-4	0.957	UTR_3_PRIME CG13841 UPSTREAM CG4721 INTRON Usp12-46 & 1 other
2R	5698049	2R_5698049_SNP [dm3] 2R_9810544_SNP [dm6]	A	G	5.307e^-4	0.957	DOWNSTREAM CG1648 INTERGENIC	TF binding site mE1_TFBS_bab1
2R	8374654	2R_8374654_SNP [dm3] 2R_12487149_SNP [dm6]	C	T	5.313e^-4	0.957	SYNONYMOUS_CODING CG34234 UTR_3_PRIME Dh44-R2 DOWNSTREAM fdl & 1 other
3R	17264761	3R_17264761_SNP [dm3] 3R_21439039_SNP [dm6]	G	A	5.315e^-4	0.957	INTERGENIC
3R	13792923	3R_13792923_SNP [dm3] 3R_17967201_SNP [dm6]	C	G	5.332e^-4	0.957	NON_SYNONYMOUS_CODING cpo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10051301	2L_10051301_SNP [dm3] 2L_10051301_SNP [dm6]	G	T	5.332e^-4	0.957	UPSTREAM CR44874 DOWNSTREAM CG33301 INTERGENIC
3R	6973352	3R_6973352_SNP [dm3] 3R_11147630_SNP [dm6]	A	T	5.333e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19535842	2R_19535842_DEL [dm3] 2R_23648319_DEL [dm6]	CCCAC	C	5.333e^-4	0.957	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13204922	3L_13204922_SNP [dm3] 3L_13211822_SNP [dm6]	G	T	5.337e^-4	0.957	UPSTREAM tRNA:CR32126 DOWNSTREAM tRNA:CR32129 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13204928	3L_13204928_SNP [dm3] 3L_13211828_SNP [dm6]	A	T	5.337e^-4	0.957	UPSTREAM tRNA:CR32126 DOWNSTREAM tRNA:CR32129 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13204931	3L_13204931_SNP [dm3] 3L_13211831_SNP [dm6]	G	A	5.337e^-4	0.957	UPSTREAM tRNA:CR32126 DOWNSTREAM tRNA:CR32129 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7474312	2R_7474312_SNP [dm3] 2R_11586807_SNP [dm6]	T	C	5.345e^-4	0.957	SYNONYMOUS_CODING tou
3L	3141194	3L_3141194_SNP [dm3] 3L_3141194_SNP [dm6]	A	G	5.350e^-4	0.957	INTRON CG11537	TF binding site mE1_TFBS_HSA
3L	20627442	3L_20627442_DEL [dm3] 3L_20634342_DEL [dm6]	ATA	C	5.369e^-4	0.957	DOWNSTREAM CR44681 EXON CR44682	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	4467341	X_4467341_SNP [dm3] X_4573308_SNP [dm6]	A	G	5.371e^-4	0.957	INTRON CR32773
3L	12537464	3L_12537464_SNP [dm3] 3L_12544364_SNP [dm6]	A	C	5.373e^-4	0.957	INTRON sowah	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13352393	3L_13352393_SNP [dm3] 3L_13359293_SNP [dm6]	T	A	5.377e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14230828	2L_14230828_SNP [dm3] 2L_14230828_SNP [dm6]	A	C	5.381e^-4	0.957	INTRON Dyrk2
2R	7429517	2R_7429517_SNP [dm3] 2R_11542012_SNP [dm6]	C	T	5.382e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	9980896	3R_9980896_SNP [dm3] 3R_14155174_SNP [dm6]	A	G	5.386e^-4	0.957	SYNONYMOUS_CODING CG31533 UPSTREAM CR44215
3L	4289597	3L_4289597_SNP [dm3] 3L_4289597_SNP [dm6]	G	A	5.388e^-4	0.957	SYNONYMOUS_CODING Hexo1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25181734	3R_25181734_DEL [dm3] 3R_29356012_DEL [dm6]	AGCCCATATATGAAAAAATC...	A	5.413e^-4	0.957	DOWNSTREAM CR45547 INTERGENIC
3R	13019331	3R_13019331_SNP [dm3] 3R_17193609_SNP [dm6]	G	A	5.416e^-4	0.957	INTRON Mur89F
2R	11188743	2R_11188743_SNP [dm3] 2R_15301238_SNP [dm6]	G	A	5.416e^-4	0.957	INTRON Trpm
3L	1182221	3L_1182221_SNP [dm3] 3L_1182221_SNP [dm6]	T	A	5.421e^-4	0.957	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	3787042	3L_3787042_SNP [dm3] 3L_3787042_SNP [dm6]	G	A	5.421e^-4	0.957	INTRON CG32264	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3787045	3L_3787045_SNP [dm3] 3L_3787045_SNP [dm6]	A	G	5.421e^-4	0.957	INTRON CG32264	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	14490295	3R_14490295_DEL [dm3] 3R_18664573_DEL [dm6]	AGGATTTCATTT...	A	5.439e^-4	0.957	UPSTREAM CG31231 INTRON Gos28	TF binding site mE1_TFBS_cad
2L	14894062	2L_14894062_SNP [dm3] 2L_14894062_SNP [dm6]	G	A	5.452e^-4	0.957	INTERGENIC
3L	21798617	3L_21798617_SNP [dm3] 3L_21805517_SNP [dm6]	T	C	5.457e^-4	0.957	INTERGENIC
2L	14112840	2L_14112840_SNP [dm3] 2L_14112840_SNP [dm6]	A	C	5.458e^-4	0.957	INTERGENIC
3L	11237510	3L_11237510_SNP [dm3] 3L_11244410_SNP [dm6]	T	C	5.469e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
2R	11731036	2R_11731036_SNP [dm3] 2R_15843531_SNP [dm6]	C	T	5.469e^-4	0.957	UTR_3_PRIME CG8249 DOWNSTREAM CG8249 INTRON tun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	6055475	2R_6055475_SNP [dm3] 2R_10167970_SNP [dm6]	A	G	5.479e^-4	0.957	INTRON KCNQ
2L	3791243	2L_3791243_SNP [dm3] 2L_3791243_SNP [dm6]	G	C	5.482e^-4	0.957	INTRON CG3921
3R	9674108	3R_9674108_SNP [dm3] 3R_13848386_SNP [dm6]	G	A	5.490e^-4	0.957	INTERGENIC
2L	19790286	2L_19790286_SNP [dm3] 2L_19790286_SNP [dm6]	G	T	5.507e^-4	0.957	INTRON CdGAPr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
3R	14170055	3R_14170055_SNP [dm3] 3R_18344333_SNP [dm6]	C	T	5.516e^-4	0.957	INTRON CG15803
3R	14170056	3R_14170056_SNP [dm3] 3R_18344334_SNP [dm6]	T	A	5.516e^-4	0.957	INTRON CG15803
X	14321261	X_14321261_SNP [dm3] X_14427228_SNP [dm6]	T	C	5.537e^-4	0.957	INTRON dpr8
3R	26269479	3R_26269479_SNP [dm3] 3R_30443757_SNP [dm6]	T	A	5.550e^-4	0.957	UPSTREAM CG15537 DOWNSTREAM Osi23 INTERGENIC
3R	26269490	3R_26269490_SNP [dm3] 3R_30443768_SNP [dm6]	A	T	5.550e^-4	0.957	UPSTREAM CG15537 DOWNSTREAM Osi23 INTERGENIC
2L	15251916	2L_15251916_SNP [dm3] 2L_15251916_SNP [dm6]	C	A	5.553e^-4	0.957	SYNONYMOUS_CODING dao	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14689289	2L_14689289_SNP [dm3] 2L_14689289_SNP [dm6]	A	G	5.559e^-4	0.957	UTR_5_PRIME osp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	5869217	X_5869217_DEL [dm3] X_5975184_DEL [dm6]	TCATTTTT	T	5.559e^-4	0.957	INTRON Grip
2L	4009771	2L_4009771_SNP [dm3] 2L_4009771_SNP [dm6]	G	T	5.569e^-4	0.957	DOWNSTREAM CG43774 INTERGENIC
2L	10063282	2L_10063282_SNP [dm3] 2L_10063282_SNP [dm6]	T	C	5.577e^-4	0.957	SYNONYMOUS_CODING Spn31A DOWNSTREAM CG44153	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12009132	2R_12009132_SNP [dm3] 2R_16121627_SNP [dm6]	T	G	5.586e^-4	0.957	NON_SYNONYMOUS_CODING Jhe
3L	9417877	3L_9417877_SNP [dm3] 3L_9424777_SNP [dm6]	T	A	5.587e^-4	0.957	UTR_3_PRIME aay INTRON CG3967	TF binding site mE1_TFBS_cad
2L	1113808	2L_1113808_SNP [dm3] 2L_1113808_SNP [dm6]	G	A	5.588e^-4	0.957	DOWNSTREAM Pino INTRON CG14340
2L	2665946	2L_2665946_SNP [dm3] 2L_2665946_SNP [dm6]	A	T	5.619e^-4	0.957	SYNONYMOUS_CODING CG9879
X	2399754	X_2399754_SNP [dm3] X_2505721_SNP [dm6]	G	A	5.619e^-4	0.957	UPSTREAM trol INTRON trol	TF binding site mE1_TFBS_cad
3L	13879396	3L_13879396_SNP [dm3] 3L_13886296_SNP [dm6]	T	G	5.621e^-4	0.957	INTRON dysc	TF binding site mE1_TFBS_cad
2L	10819261	2L_10819261_SNP [dm3] 2L_10819261_SNP [dm6]	T	G	5.628e^-4	0.957	NON_SYNONYMOUS_CODING CG6508 INTRON Nos
2L	7901504	2L_7901504_SNP [dm3] 2L_7901504_SNP [dm6]	A	T	5.635e^-4	0.957	INTRON Snoo
3R	16020417	3R_16020417_SNP [dm3] 3R_20194695_SNP [dm6]	G	T	5.635e^-4	0.957	INTERGENIC
2R	19960168	2R_19960168_SNP [dm3] 2R_24072645_SNP [dm6]	G	A	5.643e^-4	0.957	INTRON CG3209
X	15455408	X_15455408_SNP [dm3] X_15561375_SNP [dm6]	C	A	5.646e^-4	0.957	INTERGENIC
3L	1556951	3L_1556951_SNP [dm3] 3L_1556951_SNP [dm6]	A	G	5.649e^-4	0.957	SYNONYMOUS_CODING CG12099	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22366730	3R_22366730_DEL [dm3] 3R_26541008_DEL [dm6]	TG	T	5.660e^-4	0.957	INTRON scrib
2R	18451946	2R_18451946_SNP [dm3] 2R_22564441_SNP [dm6]	T	A	5.660e^-4	0.957	INTRON dnr1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	15040636	X_15040636_SNP [dm3] X_15146603_SNP [dm6]	T	C	5.664e^-4	0.957	INTRON CG9095
2L	19334851	2L_19334851_SNP [dm3] 2L_19334851_SNP [dm6]	G	A	5.666e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10853394	3R_10853394_SNP [dm3] 3R_15027672_SNP [dm6]	C	T	5.666e^-4	0.957	INTERGENIC
3R	26338104	3R_26338104_SNP [dm3] 3R_30512382_SNP [dm6]	A	T	5.672e^-4	0.957	UTR_3_PRIME CG31524 UPSTREAM PH4alphaNE2
3L	13204641	3L_13204641_SNP [dm3] 3L_13211541_SNP [dm6]	T	A	5.674e^-4	0.957	UPSTREAM tRNA:CR32128 & 1 other DOWNSTREAM tRNA:CR32129 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19513531	2R_19513531_DEL [dm3] 2R_23626008_DEL [dm6]	TATGAGT	T	5.682e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17886908	2R_17886908_SNP [dm3] 2R_21999403_SNP [dm6]	C	T	5.689e^-4	0.957	INTRON CG34370
3L	7032513	3L_7032513_SNP [dm3] 3L_7039413_SNP [dm6]	C	G	5.696e^-4	0.957	INTRON Mp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10096530	2L_10096530_SNP [dm3] 2L_10096530_SNP [dm6]	C	T	5.702e^-4	0.957	INTRON CG44153 & 1 other
3L	13059536	3L_13059536_SNP [dm3] 3L_13066436_SNP [dm6]	T	G	5.704e^-4	0.957	INTERGENIC
2L	3261343	2L_3261343_SNP [dm3] 2L_3261343_SNP [dm6]	C	T	5.709e^-4	0.957	UPSTREAM CR45337 DOWNSTREAM CR45338 INTERGENIC
2L	9844798	2L_9844798_SNP [dm3] 2L_9844798_SNP [dm6]	C	T	5.710e^-4	0.957	INTRON nAChRalpha6
2L	10062610	2L_10062610_SNP [dm3] 2L_10062610_SNP [dm6]	C	T	5.715e^-4	0.957	SYNONYMOUS_CODING Spn31A
3L	20858572	3L_20858572_SNP [dm3] 3L_20865472_SNP [dm6]	G	T	5.725e^-4	0.957	INTRON CG32432
X	2399752	X_2399752_SNP [dm3] X_2505719_SNP [dm6]	T	C	5.738e^-4	0.957	UPSTREAM trol INTRON trol	TF binding site mE1_TFBS_cad
3L	6577166	3L_6577166_SNP [dm3] 3L_6584066_SNP [dm6]	T	G	5.739e^-4	0.957	INTRON CG18769 & 1 other	TF binding site mE1_TFBS_inv
3L	6577168	3L_6577168_SNP [dm3] 3L_6584068_SNP [dm6]	G	A	5.739e^-4	0.957	INTRON CG18769 & 1 other	TF binding site mE1_TFBS_inv
3L	6577169	3L_6577169_SNP [dm3] 3L_6584069_SNP [dm6]	C	T	5.739e^-4	0.957	INTRON CG18769 & 1 other	TF binding site mE1_TFBS_inv
3R	23502966	3R_23502966_SNP [dm3] 3R_27677244_SNP [dm6]	G	A	5.739e^-4	0.957	UPSTREAM CG5590 DOWNSTREAM unc80 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
2L	9809984	2L_9809984_SNP [dm3] 2L_9809984_SNP [dm6]	G	A	5.742e^-4	0.957	INTRON nAChRalpha6
3R	13499605	3R_13499605_SNP [dm3] 3R_17673883_SNP [dm6]	G	C	5.757e^-4	0.957	UTR_3_PRIME alt DOWNSTREAM alt & 1 other
2L	12923203	2L_12923203_SNP [dm3] 2L_12923203_SNP [dm6]	G	C	5.762e^-4	0.957	INTRON ACXA
3R	18693758	3R_18693758_SNP [dm3] 3R_22868036_SNP [dm6]	C	T	5.763e^-4	0.957	INTERGENIC
3L	6556486	3L_6556486_SNP [dm3] 3L_6563386_SNP [dm6]	A	G	5.777e^-4	0.957	UTR_3_PRIME jv INTRON CG18769	TF binding site mE1_TFBS_cad
2L	9758006	2L_9758006_SNP [dm3] 2L_9758006_SNP [dm6]	C	A	5.778e^-4	0.957	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
2L	1318127	2L_1318127_SNP [dm3] 2L_1318127_SNP [dm6]	G	C	5.785e^-4	0.957	INTERGENIC
2L	10962476	2L_10962476_SNP [dm3] 2L_10962476_SNP [dm6]	A	G	5.810e^-4	0.957	INTRON dpr2
2R	1371260	2R_1371260_SNP [dm3] 2R_5483755_SNP [dm6]	A	C	5.813e^-4	0.957	INTRON CG30440
3R	17997267	3R_17997267_SNP [dm3] 3R_22171545_SNP [dm6]	C	G	5.815e^-4	0.957	INTRON SKIP	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	17997739	3R_17997739_SNP [dm3] 3R_22172017_SNP [dm6]	G	C	5.815e^-4	0.957	INTRON SKIP	TF binding site mE1_TFBS_cad
2L	8986592	2L_8986592_SNP [dm3] 2L_8986592_SNP [dm6]	G	A	5.819e^-4	0.957	SPLICE_SITE_REGION rost INTRON rost
2L	13024139	2L_13024139_SNP [dm3] 2L_13024139_SNP [dm6]	G	C	5.826e^-4	0.957	SYNONYMOUS_CODING CG9932	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5655545	2L_5655545_SNP [dm3] 2L_5655545_SNP [dm6]	G	A	5.841e^-4	0.957	INTRON CG31646	TF binding site mE1_TFBS_inv
2L	20039819	2L_20039819_SNP [dm3] 2L_20039819_SNP [dm6]	A	G	5.842e^-4	0.957	INTRON sNPF
3R	6972345	3R_6972345_SNP [dm3] 3R_11146623_SNP [dm6]	A	G	5.846e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	6973382	3R_6973382_SNP [dm3] 3R_11147660_SNP [dm6]	A	G	5.846e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13878924	3L_13878924_SNP [dm3] 3L_13885824_SNP [dm6]	T	C	5.858e^-4	0.957	UTR_3_PRIME dysc INTRON dysc
3R	24829734	3R_24829734_SNP [dm3] 3R_29004012_SNP [dm6]	A	G	5.864e^-4	0.957	INTRON wat
2L	6452326	2L_6452326_SNP [dm3] 2L_6452326_SNP [dm6]	G	C	5.895e^-4	0.957	SYNONYMOUS_CODING retm	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	19841309	2R_19841309_SNP [dm3] 2R_23953786_SNP [dm6]	A	T	5.897e^-4	0.957	UPSTREAM thoc5 INTRON CG3803	TF binding site BDTNP1_TFBS_dl
2R	16737169	2R_16737169_SNP [dm3] 2R_20849664_SNP [dm6]	A	G	5.907e^-4	0.957	SYNONYMOUS_CODING CG17999 DOWNSTREAM CG9993	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15841133	3L_15841133_SNP [dm3] 3L_15848033_SNP [dm6]	T	C	5.907e^-4	0.957	DOWNSTREAM pHCl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3L	22422086	3L_22422086_DEL [dm3] 3L_22428986_DEL [dm6]	TTCAGAAATCTAG...	T	5.911e^-4	0.957	INTERGENIC
2L	19109194	2L_19109194_SNP [dm3] 2L_19109194_SNP [dm6]	T	C	5.931e^-4	0.957	UPSTREAM Lim3 & 1 other EXON CR44905
2R	963649	2R_963649_SNP [dm3] 2R_5076144_SNP [dm6]	T	G	5.954e^-4	0.957	INTERGENIC
3R	14165962	3R_14165962_SNP [dm3] 3R_18340240_SNP [dm6]	T	C	5.955e^-4	0.957	INTRON CG15803
3L	7455323	3L_7455323_SNP [dm3] 3L_7462223_SNP [dm6]	A	G	5.959e^-4	0.957	INTERGENIC
3L	1557903	3L_1557903_SNP [dm3] 3L_1557903_SNP [dm6]	C	T	5.963e^-4	0.957	UTR_5_PRIME CG12099 UPSTREAM Pex10	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	5119744	3R_5119744_SNP [dm3] 3R_9294022_SNP [dm6]	T	C	5.967e^-4	0.957	UTR_3_PRIME CG8861 DOWNSTREAM CG8861	TF binding site BDTNP1_TFBS_dl
3R	20461663	3R_20461663_DEL [dm3] 3R_24635941_DEL [dm6]	CC	C	5.972e^-4	0.957	UTR_3_PRIME puf UPSTREAM CG43222
2L	5260145	2L_5260145_SNP [dm3] 2L_5260145_SNP [dm6]	A	T	5.976e^-4	0.957	DOWNSTREAM CR44744 INTRON tkv
2L	5260153	2L_5260153_SNP [dm3] 2L_5260153_SNP [dm6]	T	A	5.976e^-4	0.957	DOWNSTREAM CR44744 INTRON tkv
2L	6938971	2L_6938971_SNP [dm3] 2L_6938971_SNP [dm6]	A	G	5.982e^-4	0.957	SYNONYMOUS_CODING CG18304	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	9967445	2L_9967445_SNP [dm3] 2L_9967445_SNP [dm6]	G	A	5.996e^-4	0.957	UTR_5_PRIME RpL13 UPSTREAM Dref INTRON RpL13	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	4335502	2L_4335502_SNP [dm3] 2L_4335502_SNP [dm6]	A	G	6.000e^-4	0.957	INTRON Atet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	17014689	2R_17014689_SNP [dm3] 2R_21127184_SNP [dm6]	A	G	6.001e^-4	0.957	INTRON CG4050	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2R	17014717	2R_17014717_SNP [dm3] 2R_21127212_SNP [dm6]	T	C	6.001e^-4	0.957	INTRON CG4050	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
2R	15971539	2R_15971539_SNP [dm3] 2R_20084034_SNP [dm6]	G	A	6.028e^-4	0.957	UPSTREAM CR44632 INTERGENIC
2L	5090914	2L_5090914_INS [dm3] 2L_5090914_INS [dm6]	T	TTTATCATACT...	6.034e^-4	0.957	INTRON pgant5
3L	2105913	3L_2105913_SNP [dm3] 3L_2105913_SNP [dm6]	A	G	6.059e^-4	0.957	SYNONYMOUS_CODING sls	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9359605	2L_9359605_SNP [dm3] 2L_9359605_SNP [dm6]	A	C	6.071e^-4	0.957	INTERGENIC
2L	9360406	2L_9360406_SNP [dm3] 2L_9360406_SNP [dm6]	G	T	6.071e^-4	0.957	INTERGENIC
2L	9361047	2L_9361047_SNP [dm3] 2L_9361047_SNP [dm6]	A	G	6.071e^-4	0.957	INTERGENIC
2L	9361516	2L_9361516_SNP [dm3] 2L_9361516_SNP [dm6]	G	A	6.071e^-4	0.957	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9361675	2L_9361675_SNP [dm3] 2L_9361675_SNP [dm6]	G	C	6.071e^-4	0.957	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9361814	2L_9361814_SNP [dm3] 2L_9361814_SNP [dm6]	G	C	6.071e^-4	0.957	INTERGENIC	TF binding site mE1_TFBS_inv
2L	9361998	2L_9361998_SNP [dm3] 2L_9361998_SNP [dm6]	G	A	6.071e^-4	0.957	INTERGENIC	TF binding site mE1_TFBS_inv
2L	9362144	2L_9362144_SNP [dm3] 2L_9362144_SNP [dm6]	C	T	6.071e^-4	0.957	INTERGENIC
X	9508327	X_9508327_SNP [dm3] X_9614294_SNP [dm6]	A	G	6.076e^-4	0.957	INTRON CG42797
X	9285669	X_9285669_SNP [dm3] X_9391636_SNP [dm6]	T	C	6.085e^-4	0.957	INTRON mgl
2L	12250734	2L_12250734_SNP [dm3] 2L_12250734_SNP [dm6]	C	T	6.097e^-4	0.957	INTRON aret
2L	19991729	2L_19991729_SNP [dm3] 2L_19991729_SNP [dm6]	A	G	6.102e^-4	0.957	INTRON CG43861
2L	9996829	2L_9996829_SNP [dm3] 2L_9996829_SNP [dm6]	A	C	6.104e^-4	0.957	UTR_3_PRIME SoYb UPSTREAM CG31875 INTRON CG31875	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	3449251	2L_3449251_SNP [dm3] 2L_3449251_SNP [dm6]	C	T	6.106e^-4	0.957	UPSTREAM Snx1 INTERGENIC
2L	8981701	2L_8981701_SNP [dm3] 2L_8981701_SNP [dm6]	A	G	6.114e^-4	0.957	DOWNSTREAM CG18662 INTRON CG13101
2R	18679623	2R_18679623_SNP [dm3] 2R_22792118_SNP [dm6]	G	A	6.122e^-4	0.957	INTRON CG42260
X	16711467	X_16711467_SNP [dm3] X_16817434_SNP [dm6]	G	C	6.126e^-4	0.957	INTRON CG4829
X	12213815	X_12213815_DEL [dm3] X_12319782_DEL [dm6]	GGG	T	6.156e^-4	0.957	INTRON Ten-a
X	12214916	X_12214916_SNP [dm3] X_12320883_SNP [dm6]	G	A	6.166e^-4	0.957	INTRON Ten-a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12214923	X_12214923_SNP [dm3] X_12320890_SNP [dm6]	C	G	6.166e^-4	0.957	INTRON Ten-a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1642310	3L_1642310_SNP [dm3] 3L_1642310_SNP [dm6]	T	C	6.179e^-4	0.957	SYNONYMOUS_CODING alphaCOP	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	17618494	X_17618494_SNP [dm3] X_17724461_SNP [dm6]	C	A	6.180e^-4	0.957	INTRON CG42684
3L	15517415	3L_15517415_SNP [dm3] 3L_15524315_SNP [dm6]	T	C	6.182e^-4	0.957	UPSTREAM CG7945 DOWNSTREAM CG33986 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA
2L	10078093	2L_10078093_SNP [dm3] 2L_10078093_SNP [dm6]	G	A	6.186e^-4	0.957	INTRON CG44153
3L	1412918	3L_1412918_SNP [dm3] 3L_1412918_SNP [dm6]	G	C	6.203e^-4	0.957	NON_SYNONYMOUS_CODING CG9168 INTRON Ptp61F
3R	14906301	3R_14906301_SNP [dm3] 3R_19080579_SNP [dm6]	A	T	6.207e^-4	0.957	INTRON cdi	TF binding site BDTNP1_TFBS_twi
2R	9695116	2R_9695116_SNP [dm3] 2R_13807611_SNP [dm6]	C	A	6.210e^-4	0.957	INTRON stj
3L	1559937	3L_1559937_DEL [dm3] 3L_1559937_DEL [dm6]	GAA	G	6.211e^-4	0.957	UTR_3_PRIME CG7879 DOWNSTREAM Pex10	TF binding site mE1_TFBS_sbb
X	3328299	X_3328299_SNP [dm3] X_3434266_SNP [dm6]	T	A	6.217e^-4	0.957	DOWNSTREAM CG14269 INTRON CR44999 & 1 other
2L	7902035	2L_7902035_DEL [dm3] 2L_7902035_DEL [dm6]	CA	C	6.222e^-4	0.957	INTRON Snoo
2L	9829405	2L_9829405_SNP [dm3] 2L_9829405_SNP [dm6]	G	A	6.230e^-4	0.957	INTRON nAChRalpha6
2L	17529169	2L_17529169_DEL [dm3] 2L_17529169_DEL [dm6]	CGGTCAATC	C	6.246e^-4	0.957	UPSTREAM CG15144 DOWNSTREAM CG15145 INTERGENIC
3R	15814385	3R_15814385_SNP [dm3] 3R_19988663_SNP [dm6]	T	C	6.248e^-4	0.957	INTRON Hs6st	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16368609	2L_16368609_SNP [dm3] 2L_16368609_SNP [dm6]	G	A	6.257e^-4	0.957	INTERGENIC
3R	24878851	3R_24878851_SNP [dm3] 3R_29053129_SNP [dm6]	A	T	6.268e^-4	0.957	SPLICE_SITE_REGION CG11842 DOWNSTREAM CG11841 INTRON CG11842	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2L	10029128	2L_10029128_SNP [dm3] 2L_10029128_SNP [dm6]	C	G	6.272e^-4	0.957	UTR_3_PRIME CG13127
X	14461878	X_14461878_SNP [dm3] X_14567845_SNP [dm6]	A	G	6.292e^-4	0.957	INTERGENIC
3L	1264739	3L_1264739_SNP [dm3] 3L_1264739_SNP [dm6]	T	C	6.301e^-4	0.957	UPSTREAM CG9134 INTRON CG9134
2R	7556287	2R_7556287_DEL [dm3] 2R_11668782_DEL [dm6]	TT	T	6.308e^-4	0.957	INTRON Roc2 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	7085754	2L_7085754_SNP [dm3] 2L_7085754_SNP [dm6]	A	T	6.311e^-4	0.957	INTERGENIC
2L	9633375	2L_9633375_SNP [dm3] 2L_9633375_SNP [dm6]	T	C	6.317e^-4	0.957	UPSTREAM Apoltp INTERGENIC
X	9614481	X_9614481_INS [dm3] X_9720448_INS [dm6]	G	GGG	6.330e^-4	0.957	INTERGENIC
3L	12378259	3L_12378259_SNP [dm3] 3L_12385159_SNP [dm6]	A	C	6.336e^-4	0.957	INTRON Ncc69
2L	8336002	2L_8336002_SNP [dm3] 2L_8336002_SNP [dm6]	A	G	6.337e^-4	0.957	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	14284960	X_14284960_SNP [dm3] X_14390927_SNP [dm6]	T	A	6.344e^-4	0.957	INTRON dpr8	TF binding site BDTNP1_TFBS_twi
2L	4028673	2L_4028673_SNP [dm3] 2L_4028673_SNP [dm6]	G	A	6.351e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	3980672	2L_3980672_DEL [dm3] 2L_3980672_DEL [dm6]	AA	A	6.368e^-4	0.957	INTRON fred
3R	26098443	3R_26098443_SNP [dm3] 3R_30272721_SNP [dm6]	C	G	6.369e^-4	0.957	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	9442936	3R_9442936_SNP [dm3] 3R_13617214_SNP [dm6]	G	A	6.373e^-4	0.957	DOWNSTREAM CG9269 & 1 other INTERGENIC
3R	14611903	3R_14611903_SNP [dm3] 3R_18786181_SNP [dm6]	A	C	6.374e^-4	0.957	INTRON CG7720
X	5867554	X_5867554_SNP [dm3] X_5973521_SNP [dm6]	T	C	6.377e^-4	0.957	INTRON Grip
X	6834978	X_6834978_SNP [dm3] X_6940945_SNP [dm6]	A	T	6.382e^-4	0.957	INTRON CG14431
3L	8995483	3L_8995483_SNP [dm3] 3L_9002383_SNP [dm6]	C	G	6.384e^-4	0.957	UTR_3_PRIME CG5087	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2695027	2L_2695027_SNP [dm3] 2L_2695027_SNP [dm6]	A	G	6.405e^-4	0.957	DOWNSTREAM CG15398 INTRON CG31690
3R	24816307	3R_24816307_SNP [dm3] 3R_28990585_SNP [dm6]	C	T	6.409e^-4	0.957	INTERGENIC
3L	15853419	3L_15853419_SNP [dm3] 3L_15860319_SNP [dm6]	T	C	6.416e^-4	0.957	INTRON pHCl
3R	8374419	3R_8374419_SNP [dm3] 3R_12548697_SNP [dm6]	A	T	6.424e^-4	0.957	UPSTREAM Octbeta3R INTERGENIC
3R	25160601	3R_25160601_SNP [dm3] 3R_29334879_SNP [dm6]	T	G	6.427e^-4	0.957	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	14368202	2R_14368202_MNP [dm3] 2R_18480697_MNP [dm6]	TTTGC	AACAG	6.447e^-4	0.957	INTRON CG30116
2R	17350266	2R_17350266_SNP [dm3] 2R_21462761_SNP [dm6]	A	C	6.460e^-4	0.957	INTRON Sdc
3L	2963688	3L_2963688_SNP [dm3] 3L_2963688_SNP [dm6]	T	G	6.465e^-4	0.957	UTR_3_PRIME Or63a
2R	18653507	2R_18653507_SNP [dm3] 2R_22766002_SNP [dm6]	G	A	6.465e^-4	0.957	DOWNSTREAM CG13527 INTRON CG42260
X	9504613	X_9504613_SNP [dm3] X_9610580_SNP [dm6]	G	A	6.473e^-4	0.957	SYNONYMOUS_CODING CG42797	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7295323	2R_7295323_SNP [dm3] 2R_11407818_SNP [dm6]	G	A	6.478e^-4	0.957	SYNONYMOUS_CODING CG7759 DOWNSTREAM CG30026	TF binding site mE1_TFBS_bab1
2L	8395036	2L_8395036_SNP [dm3] 2L_8395036_SNP [dm6]	T	G	6.478e^-4	0.957	UPSTREAM lectin-29Ca & 1 other DOWNSTREAM Peritrophin-15a EXON CR45343
2L	12261696	2L_12261696_SNP [dm3] 2L_12261696_SNP [dm6]	A	T	6.487e^-4	0.957	INTRON aret
2L	12261699	2L_12261699_SNP [dm3] 2L_12261699_SNP [dm6]	T	A	6.487e^-4	0.957	INTRON aret
X	13321367	X_13321367_SNP [dm3] X_13427334_SNP [dm6]	T	A	6.488e^-4	0.957	INTERGENIC	TF binding site mE1_TFBS_inv
2L	9876592	2L_9876592_SNP [dm3] 2L_9876592_SNP [dm6]	T	C	6.488e^-4	0.957	INTRON nAChRalpha6
3L	8973487	3L_8973487_SNP [dm3] 3L_8980387_SNP [dm6]	T	G	6.491e^-4	0.957	UPSTREAM CG5644 INTERGENIC
3L	3534640	3L_3534640_SNP [dm3] 3L_3534640_SNP [dm6]	T	C	6.498e^-4	0.957	INTRON Eip63E
3L	2330845	3L_2330845_SNP [dm3] 3L_2330845_SNP [dm6]	A	G	6.513e^-4	0.957	INTRON MsR1
3R	25520554	3R_25520554_DEL [dm3] 3R_29694832_DEL [dm6]	TAAGGTAACCCCAT...	T	6.515e^-4	0.957	INTRON dmrt99B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd

Missing results

By genomic position
Variant impact
Gene name

CN_Hobo_TIDAL_W phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results