DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.666e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2R_NS	4.9397	0.0846

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1556 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	9824945	2L_9824945_SNP [dm3] 2L_9824945_SNP [dm6]	A	G	8.835e^-7	0.978	INTRON nAChRalpha6
2L	10216987	2L_10216987_SNP [dm3] 2L_10216987_SNP [dm6]	C	T	5.762e^-6	0.978	SYNONYMOUS_CODING Npc1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10029121	2L_10029121_SNP [dm3] 2L_10029121_SNP [dm6]	C	G	8.123e^-6	0.978	UTR_3_PRIME CG13127
3R	24882287	3R_24882287_SNP [dm3] 3R_29056565_SNP [dm6]	A	T	1.085e^-5	0.978	NON_SYNONYMOUS_CODING Sirt7 DOWNSTREAM CG11843
X	11843564	X_11843564_SNP [dm3] X_11949531_SNP [dm6]	A	T	1.159e^-5	0.978	INTRON cac	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10091948	2L_10091948_SNP [dm3] 2L_10091948_SNP [dm6]	A	G	1.327e^-5	0.978	SYNONYMOUS_CODING CG13133 INTRON CG44153	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9854889	2R_9854889_SNP [dm3] 2R_13967384_SNP [dm6]	T	C	1.619e^-5	0.978	SYNONYMOUS_CODING Cp1 UPSTREAM Aats-phe	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	11843567	X_11843567_SNP [dm3] X_11949534_SNP [dm6]	G	T	1.759e^-5	0.978	INTRON cac	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	3040600	2R_3040600_SNP [dm3] 2R_7153095_SNP [dm6]	A	T	1.791e^-5	0.978	SYNONYMOUS_CODING Spn43Ab DOWNSTREAM Spn43Ad INTRON pk	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26963749	3R_26963749_SNP [dm3] 3R_31138027_SNP [dm6]	T	C	1.943e^-5	0.978	INTRON Gycbeta100B
3L	3633461	3L_3633461_SNP [dm3] 3L_3633461_SNP [dm6]	A	G	1.989e^-5	0.978	INTRON dar1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	12392094	2R_12392094_INS [dm3] 2R_16504589_INS [dm6]	C	CACCCCCCA	2.057e^-5	0.978	INTRON Sema-2a
3L	2922495	3L_2922495_SNP [dm3] 3L_2922495_SNP [dm6]	T	C	2.123e^-5	0.978	INTRON Shab
3L	3633278	3L_3633278_SNP [dm3] 3L_3633278_SNP [dm6]	G	T	2.144e^-5	0.978	INTRON dar1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8024626	3L_8024626_SNP [dm3] 3L_8031526_SNP [dm6]	T	C	2.166e^-5	0.978	INTRON nmo
2L	1318084	2L_1318084_SNP [dm3] 2L_1318084_SNP [dm6]	C	A	2.361e^-5	0.978	INTERGENIC
2L	1318088	2L_1318088_SNP [dm3] 2L_1318088_SNP [dm6]	G	T	2.361e^-5	0.978	INTERGENIC
2R	14531475	2R_14531475_SNP [dm3] 2R_18643970_SNP [dm6]	C	T	2.384e^-5	0.978	INTRON SP2637
2R	11663155	2R_11663155_SNP [dm3] 2R_15775650_SNP [dm6]	G	A	2.402e^-5	0.978	INTRON Zasp52	TF binding site mE1_TFBS_chinmo
2L	10230182	2L_10230182_SNP [dm3] 2L_10230182_SNP [dm6]	C	T	2.570e^-5	0.978	INTRON CG5694	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	4289564	3L_4289564_SNP [dm3] 3L_4289564_SNP [dm6]	T	C	2.672e^-5	0.978	SYNONYMOUS_CODING Hexo1	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	12392088	2R_12392088_SNP [dm3] 2R_16504583_SNP [dm6]	A	C	2.835e^-5	0.978	INTRON Sema-2a
3R	24883928	3R_24883928_SNP [dm3] 3R_29058206_SNP [dm6]	A	G	2.871e^-5	0.978	NON_SYNONYMOUS_CODING Sirt7	TF binding site mE1_TFBS_sens
2L	7051350	2L_7051350_SNP [dm3] 2L_7051350_SNP [dm6]	C	T	2.912e^-5	0.978	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3R	25103909	3R_25103909_SNP [dm3] 3R_29278187_SNP [dm6]	C	T	2.943e^-5	0.978	INTERGENIC	regulatory region REDfly_CRMs
X	2284680	X_2284680_SNP [dm3] X_2390647_SNP [dm6]	T	A	3.246e^-5	0.978	INTERGENIC
3L	2991753	3L_2991753_SNP [dm3] 3L_2991753_SNP [dm6]	T	C	3.280e^-5	0.978	INTERGENIC
3R	18991357	3R_18991357_SNP [dm3] 3R_23165635_SNP [dm6]	C	T	3.350e^-5	0.978	INTERGENIC
3R	14048852	3R_14048852_SNP [dm3] 3R_18223130_SNP [dm6]	T	C	3.458e^-5	0.978	SYNONYMOUS_CODING mTerf5 UPSTREAM CG7993	TF binding site mE1_TFBS_sens
2L	14894113	2L_14894113_SNP [dm3] 2L_14894113_SNP [dm6]	G	C	3.538e^-5	0.978	INTERGENIC
3R	24884393	3R_24884393_SNP [dm3] 3R_29058671_SNP [dm6]	A	C	3.654e^-5	0.978	SYNONYMOUS_CODING Sirt7 DOWNSTREAM Cul5
2R	13779380	2R_13779380_SNP [dm3] 2R_17891875_SNP [dm6]	A	G	3.659e^-5	0.978	INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	5143433	3R_5143433_SNP [dm3] 3R_9317711_SNP [dm6]	C	T	3.692e^-5	0.978	INTRON CG8861
3L	8973595	3L_8973595_SNP [dm3] 3L_8980495_SNP [dm6]	T	C	3.974e^-5	0.978	UPSTREAM CG5644 INTERGENIC
2L	19789025	2L_19789025_SNP [dm3] 2L_19789025_SNP [dm6]	G	A	3.986e^-5	0.978	INTRON CdGAPr
2R	6358554	2R_6358554_SNP [dm3] 2R_10471049_SNP [dm6]	G	T	4.001e^-5	0.978	INTRON whd
3L	1189002	3L_1189002_SNP [dm3] 3L_1189002_SNP [dm6]	G	A	4.062e^-5	0.978	UPSTREAM CG13912 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2R	17886860	2R_17886860_SNP [dm3] 2R_21999355_SNP [dm6]	G	T	4.136e^-5	0.978	INTRON CG34370
2R	20496324	2R_20496324_SNP [dm3] 2R_24608801_SNP [dm6]	G	A	4.179e^-5	0.978	DOWNSTREAM CG42361 INTRON CG42360	TF binding site mE1_TFBS_cad
3L	8331303	3L_8331303_SNP [dm3] 3L_8338203_SNP [dm6]	G	A	4.181e^-5	0.978	UTR_3_PRIME Cpr66Cb UPSTREAM Pex2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9509103	3L_9509103_SNP [dm3] 3L_9516003_SNP [dm6]	C	A	4.309e^-5	0.978	INTRON CG33700
2R	7422794	2R_7422794_SNP [dm3] 2R_11535289_SNP [dm6]	G	A	4.340e^-5	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10514949	2L_10514949_SNP [dm3] 2L_10514949_SNP [dm6]	C	T	4.398e^-5	0.978	INTRON Fatp & 1 other
2L	11607832	2L_11607832_SNP [dm3] 2L_11607832_SNP [dm6]	C	T	4.550e^-5	0.978	INTRON kek2	TF binding site mE1_TFBS_Ubx
2L	11166476	2L_11166476_SNP [dm3] 2L_11166476_SNP [dm6]	G	A	4.611e^-5	0.978	INTRON Ca-beta
3L	15896021	3L_15896021_INS [dm3] 3L_15902921_INS [dm6]	T	TCTT	4.685e^-5	0.978	UTR_3_PRIME sff
3R	13611718	3R_13611718_SNP [dm3] 3R_17785996_SNP [dm6]	C	T	4.786e^-5	0.978	INTRON CG43102
3R	14696910	3R_14696910_SNP [dm3] 3R_18871188_SNP [dm6]	C	G	4.797e^-5	0.978	INTERGENIC
X	16868262	X_16868262_SNP [dm3] X_16974229_SNP [dm6]	G	A	4.884e^-5	0.978	SYNONYMOUS_CODING CG45002	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
X	2666078	X_2666078_SNP [dm3] X_2772045_SNP [dm6]	G	C	5.077e^-5	0.978	INTRON kirre
3L	20617793	3L_20617793_SNP [dm3] 3L_20624693_SNP [dm6]	T	C	5.101e^-5	0.978	UPSTREAM CR44684 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	702221	2L_702221_SNP [dm3] 2L_702221_SNP [dm6]	G	A	5.211e^-5	0.978	INTRON ds	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
3R	14175778	3R_14175778_DEL [dm3] 3R_18350056_DEL [dm6]	CTAAGTATAT	C	5.420e^-5	0.978	INTRON CG15803
2L	7908374	2L_7908374_SNP [dm3] 2L_7908374_SNP [dm6]	C	T	5.425e^-5	0.978	INTRON Snoo
2L	1318102	2L_1318102_SNP [dm3] 2L_1318102_SNP [dm6]	G	T	5.431e^-5	0.978	INTERGENIC
X	5465862	X_5465862_DEL [dm3] X_5571829_DEL [dm6]	GG	G	5.458e^-5	0.978	INTERGENIC
X	12213571	X_12213571_SNP [dm3] X_12319538_SNP [dm6]	T	C	5.516e^-5	0.978	INTRON Ten-a	TF binding site mE1_TFBS_cad
3R	24881038	3R_24881038_SNP [dm3] 3R_29055316_SNP [dm6]	C	T	5.627e^-5	0.978	NON_SYNONYMOUS_CODING CG11843 UPSTREAM Sirt7	TF binding site BDTNP1_TFBS_dl
3R	24881063	3R_24881063_SNP [dm3] 3R_29055341_SNP [dm6]	G	C	5.627e^-5	0.978	SYNONYMOUS_CODING CG11843 UPSTREAM Sirt7	TF binding site BDTNP1_TFBS_dl
2R	15273213	2R_15273213_SNP [dm3] 2R_19385708_SNP [dm6]	T	A	5.658e^-5	0.978	UPSTREAM CG10081 DOWNSTREAM CG10073 INTERGENIC
2R	2036857	2R_2036857_SNP [dm3] 2R_6149352_SNP [dm6]	A	G	5.692e^-5	0.978	INTRON EcR
2R	19102584	2R_19102584_SNP [dm3] 2R_23215061_SNP [dm6]	G	A	5.742e^-5	0.978	INTERGENIC
3R	27078849	3R_27078849_SNP [dm3] 3R_31253127_SNP [dm6]	C	A	5.924e^-5	0.978	NON_SYNONYMOUS_CODING mRpL32 UPSTREAM qless DOWNSTREAM CG1750	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	27079408	3R_27079408_SNP [dm3] 3R_31253686_SNP [dm6]	G	A	5.924e^-5	0.978	SYNONYMOUS_CODING CG1750 UTR_3_PRIME mRpL32	TF binding site mE1_TFBS_sens
2L	22051149	2L_22051149_SNP [dm3] 2L_22051149_SNP [dm6]	T	C	5.948e^-5	0.978	INTERGENIC	TF binding site mE1_TFBS_sens
3L	13879456	3L_13879456_SNP [dm3] 3L_13886356_SNP [dm6]	C	T	5.967e^-5	0.978	SPLICE_SITE_REGION dysc INTRON dysc	TF binding site mE1_TFBS_cad
2R	9739622	2R_9739622_SNP [dm3] 2R_13852117_SNP [dm6]	T	C	6.012e^-5	0.978	NON_SYNONYMOUS_CODING CG30485 DOWNSTREAM CG6543
2L	20039836	2L_20039836_SNP [dm3] 2L_20039836_SNP [dm6]	A	G	6.168e^-5	0.978	INTRON sNPF
3R	10854896	3R_10854896_SNP [dm3] 3R_15029174_SNP [dm6]	C	T	6.223e^-5	0.978	INTERGENIC
X	4850023	X_4850023_SNP [dm3] X_4955990_SNP [dm6]	C	A	6.269e^-5	0.978	DOWNSTREAM Ptp4E & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_kn
3L	20603215	3L_20603215_SNP [dm3] 3L_20610115_SNP [dm6]	C	G	6.399e^-5	0.978	INTRON knrl
2L	19789027	2L_19789027_SNP [dm3] 2L_19789027_SNP [dm6]	T	A	6.403e^-5	0.978	INTRON CdGAPr
2L	19789033	2L_19789033_SNP [dm3] 2L_19789033_SNP [dm6]	A	G	6.403e^-5	0.978	INTRON CdGAPr
2R	5877242	2R_5877242_SNP [dm3] 2R_9989737_SNP [dm6]	C	T	6.500e^-5	0.978	UPSTREAM TER94 & 1 other INTRON TER94	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn
2R	13760370	2R_13760370_SNP [dm3] 2R_17872865_SNP [dm6]	G	A	6.511e^-5	0.978	UPSTREAM Mapmodulin INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	13760403	2R_13760403_SNP [dm3] 2R_17872898_SNP [dm6]	T	C	6.511e^-5	0.978	UPSTREAM Mapmodulin INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	26963771	3R_26963771_SNP [dm3] 3R_31138049_SNP [dm6]	A	T	6.614e^-5	0.978	INTRON Gycbeta100B
3R	16020533	3R_16020533_SNP [dm3] 3R_20194811_SNP [dm6]	T	C	6.686e^-5	0.978	INTERGENIC
X	2285147	X_2285147_SNP [dm3] X_2391114_SNP [dm6]	G	A	6.720e^-5	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	10230278	2L_10230278_SNP [dm3] 2L_10230278_SNP [dm6]	A	T	6.851e^-5	0.978	INTRON CG5694	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	3981132	2L_3981132_SNP [dm3] 2L_3981132_SNP [dm6]	C	A	6.912e^-5	0.978	INTRON fred
3L	1188053	3L_1188053_SNP [dm3] 3L_1188053_SNP [dm6]	G	A	6.919e^-5	0.978	INTERGENIC
2R	13042287	2R_13042287_SNP [dm3] 2R_17154782_SNP [dm6]	T	G	6.947e^-5	0.978	INTRON CG17290
2L	9618172	2L_9618172_SNP [dm3] 2L_9618172_SNP [dm6]	A	T	6.982e^-5	0.978	INTRON GlcAT-S
3R	22573603	3R_22573603_SNP [dm3] 3R_26747881_SNP [dm6]	G	A	7.006e^-5	0.978	INTERGENIC
2L	7904690	2L_7904690_SNP [dm3] 2L_7904690_SNP [dm6]	C	G	7.061e^-5	0.978	INTRON Snoo	TF binding site mE1_TFBS_chinmo
3L	2903314	3L_2903314_SNP [dm3] 3L_2903314_SNP [dm6]	T	G	7.212e^-5	0.978	INTRON Shab
2L	11607792	2L_11607792_SNP [dm3] 2L_11607792_SNP [dm6]	A	G	7.271e^-5	0.978	INTRON kek2	TF binding site mE1_TFBS_Ubx
3R	8151515	3R_8151515_SNP [dm3] 3R_12325793_SNP [dm6]	T	C	7.315e^-5	0.978	DOWNSTREAM CG10013 INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	13042332	2R_13042332_DEL [dm3] 2R_17154827_DEL [dm6]	TT	T	7.327e^-5	0.978	INTRON CG17290
2R	8374654	2R_8374654_SNP [dm3] 2R_12487149_SNP [dm6]	C	T	7.427e^-5	0.978	SYNONYMOUS_CODING CG34234 UTR_3_PRIME Dh44-R2 DOWNSTREAM fdl & 1 other
3R	14174865	3R_14174865_SNP [dm3] 3R_18349143_SNP [dm6]	T	C	7.529e^-5	0.978	INTRON CG15803
3L	1614702	3L_1614702_SNP [dm3] 3L_1614702_SNP [dm6]	C	T	7.796e^-5	0.978	NON_SYNONYMOUS_CODING CG12105 UPSTREAM CG12105 INTRON CG33791 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14761328	2R_14761328_SNP [dm3] 2R_18873823_SNP [dm6]	T	A	7.943e^-5	0.978	INTERGENIC
2R	16218604	2R_16218604_SNP [dm3] 2R_20331099_SNP [dm6]	G	A	7.943e^-5	0.978	DOWNSTREAM CG8929 INTERGENIC	TF binding site mE1_TFBS_sens
2R	19643339	2R_19643339_SNP [dm3] 2R_23755816_SNP [dm6]	T	G	7.943e^-5	0.978	SYNONYMOUS_CODING CG9850 INTRON CG9850
3L	1190231	3L_1190231_SNP [dm3] 3L_1190231_SNP [dm6]	C	T	7.943e^-5	0.978	SYNONYMOUS_CODING CG13912 DOWNSTREAM Trh	TF binding site mE1_TFBS_cad
3L	14233691	3L_14233691_SNP [dm3] 3L_14240591_SNP [dm6]	T	G	7.943e^-5	0.978	INTERGENIC	TF binding site mE1_TFBS_cad
3L	20869524	3L_20869524_SNP [dm3] 3L_20876424_SNP [dm6]	C	T	7.943e^-5	0.978	INTRON CG32432
X	13194306	X_13194306_SNP [dm3] X_13300273_SNP [dm6]	A	G	7.943e^-5	0.978	DOWNSTREAM CG1622 INTRON CG1764
3L	3279726	3L_3279726_SNP [dm3] 3L_3279726_SNP [dm6]	G	T	7.954e^-5	0.978	UPSTREAM CG12017 INTERGENIC
2R	6058432	2R_6058432_SNP [dm3] 2R_10170927_SNP [dm6]	A	G	7.973e^-5	0.978	INTRON KCNQ
2R	9844085	2R_9844085_SNP [dm3] 2R_13956580_SNP [dm6]	T	A	8.011e^-5	0.978	UPSTREAM AGO1 DOWNSTREAM mRpL53 & 1 other INTRON AGO1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	4009682	2L_4009682_SNP [dm3] 2L_4009682_SNP [dm6]	G	A	8.070e^-5	0.978	DOWNSTREAM CG43774 INTERGENIC
2R	11412837	2R_11412837_SNP [dm3] 2R_15525332_SNP [dm6]	A	G	8.091e^-5	0.978	SPLICE_SITE_REGION Khc-73 INTRON Khc-73
2L	7513910	2L_7513910_SNP [dm3] 2L_7513910_SNP [dm6]	G	A	8.207e^-5	0.978	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	11661640	2R_11661640_SNP [dm3] 2R_15774135_SNP [dm6]	G	T	8.309e^-5	0.978	INTRON Zasp52	TF binding site mE1_TFBS_chinmo
2L	7906722	2L_7906722_SNP [dm3] 2L_7906722_SNP [dm6]	T	C	8.333e^-5	0.978	INTRON Snoo
3R	19909992	3R_19909992_SNP [dm3] 3R_24084270_SNP [dm6]	G	A	8.404e^-5	0.978	INTRON 4EHP
2L	20039810	2L_20039810_SNP [dm3] 2L_20039810_SNP [dm6]	T	C	8.436e^-5	0.978	INTRON sNPF
2L	20039834	2L_20039834_SNP [dm3] 2L_20039834_SNP [dm6]	C	T	8.436e^-5	0.978	INTRON sNPF
X	13095605	X_13095605_INS [dm3] X_13201572_INS [dm6]	G	GAAAATGGGAG...	8.554e^-5	0.978	FRAME_SHIFT CG44437 INTRON sno	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	24881240	3R_24881240_SNP [dm3] 3R_29055518_SNP [dm6]	G	C	8.589e^-5	0.978	NON_SYNONYMOUS_CODING CG11843 UPSTREAM Sirt7	TF binding site BDTNP1_TFBS_dl
X	13683819	X_13683819_SNP [dm3] X_13789786_SNP [dm6]	A	G	8.729e^-5	0.978	DOWNSTREAM CG10993 INTRON inaE
2R	7962897	2R_7962897_SNP [dm3] 2R_12075392_SNP [dm6]	C	G	8.785e^-5	0.978	INTRON CG8888
2R	10249487	2R_10249487_SNP [dm3] 2R_14361982_SNP [dm6]	T	A	8.921e^-5	0.978	UTR_5_PRIME Arc2 UPSTREAM CR10102
3R	25531271	3R_25531271_SNP [dm3] 3R_29705549_SNP [dm6]	C	T	9.007e^-5	0.978	INTERGENIC
X	8725112	X_8725112_INS [dm3] X_8831079_INS [dm6]	T	TTA	9.055e^-5	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4361594	X_4361594_SNP [dm3] X_4467561_SNP [dm6]	G	A	9.158e^-5	0.978	INTRON bi & 1 other	TF binding site mE1_TFBS_chinmo
3R	20929533	3R_20929533_SNP [dm3] 3R_25103811_SNP [dm6]	C	T	9.187e^-5	0.978	NON_SYNONYMOUS_CODING CG34027 DOWNSTREAM CG45095
2R	18276415	2R_18276415_SNP [dm3] 2R_22388910_SNP [dm6]	G	A	9.239e^-5	0.978	INTRON CG13506
2R	12009184	2R_12009184_SNP [dm3] 2R_16121679_SNP [dm6]	C	T	9.318e^-5	0.978	SYNONYMOUS_CODING Jhe
3R	26338099	3R_26338099_SNP [dm3] 3R_30512377_SNP [dm6]	T	G	9.416e^-5	0.978	UTR_3_PRIME CG31524 UPSTREAM PH4alphaNE2
3R	22733607	3R_22733607_SNP [dm3] 3R_26907885_SNP [dm6]	C	A	9.426e^-5	0.978	INTRON T48
2R	17886908	2R_17886908_SNP [dm3] 2R_21999403_SNP [dm6]	C	T	9.572e^-5	0.978	INTRON CG34370
3R	16020473	3R_16020473_SNP [dm3] 3R_20194751_SNP [dm6]	A	G	9.662e^-5	0.978	INTERGENIC
2L	10230048	2L_10230048_SNP [dm3] 2L_10230048_SNP [dm6]	C	T	9.708e^-5	0.978	INTRON CG5694	TF binding site BDTNP1_TFBS_dl
2R	2035245	2R_2035245_SNP [dm3] 2R_6147740_SNP [dm6]	C	G	9.833e^-5	0.978	INTRON EcR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2035267	2R_2035267_SNP [dm3] 2R_6147762_SNP [dm6]	T	C	9.833e^-5	0.978	INTRON EcR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13729664	2L_13729664_SNP [dm3] 2L_13729664_SNP [dm6]	T	C	9.983e^-5	0.978	INTERGENIC
2L	9808372	2L_9808372_SNP [dm3] 2L_9808372_SNP [dm6]	C	A	1.009e^-4	0.978	INTRON nAChRalpha6
3R	24880829	3R_24880829_SNP [dm3] 3R_29055107_SNP [dm6]	G	T	1.009e^-4	0.978	NON_SYNONYMOUS_CODING CG11843 UPSTREAM Sirt7	TF binding site BDTNP1_TFBS_dl
3L	7168097	3L_7168097_SNP [dm3] 3L_7174997_SNP [dm6]	C	G	1.012e^-4	0.978	UTR_3_PRIME Dscam2 INTRON Dscam2
3L	7168101	3L_7168101_SNP [dm3] 3L_7175001_SNP [dm6]	C	A	1.012e^-4	0.978	UTR_3_PRIME Dscam2 INTRON Dscam2
2L	8712101	2L_8712101_SNP [dm3] 2L_8712101_SNP [dm6]	T	G	1.037e^-4	0.978	INTRON raw
2L	20039756	2L_20039756_SNP [dm3] 2L_20039756_SNP [dm6]	C	A	1.044e^-4	0.978	INTRON sNPF
2L	20039812	2L_20039812_SNP [dm3] 2L_20039812_SNP [dm6]	A	C	1.052e^-4	0.978	INTRON sNPF
2L	20039823	2L_20039823_SNP [dm3] 2L_20039823_SNP [dm6]	G	A	1.052e^-4	0.978	INTRON sNPF
2L	14311764	2L_14311764_INS [dm3] 2L_14311764_INS [dm6]	T	TG	1.054e^-4	0.978	INTRON wb
2L	5966209	2L_5966209_SNP [dm3] 2L_5966209_SNP [dm6]	T	G	1.061e^-4	0.978	SYNONYMOUS_CODING CG13992	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20929268	3R_20929268_SNP [dm3] 3R_25103546_SNP [dm6]	G	A	1.068e^-4	0.978	NON_SYNONYMOUS_CODING CG45095 DOWNSTREAM CG34027
3R	14175882	3R_14175882_SNP [dm3] 3R_18350160_SNP [dm6]	A	T	1.097e^-4	0.978	INTRON CG15803
3R	14175884	3R_14175884_SNP [dm3] 3R_18350162_SNP [dm6]	G	C	1.097e^-4	0.978	INTRON CG15803
2R	14413756	2R_14413756_DEL [dm3] 2R_18526251_DEL [dm6]	ACTATAAATA	A	1.097e^-4	0.978	UTR_3_PRIME CG43066 DOWNSTREAM CG43066
3L	21798617	3L_21798617_SNP [dm3] 3L_21805517_SNP [dm6]	T	C	1.120e^-4	0.978	INTERGENIC
3R	26963840	3R_26963840_INS [dm3] 3R_31138118_INS [dm6]	A	AA	1.128e^-4	0.978	INTRON Gycbeta100B
3R	26963842	3R_26963842_SNP [dm3] 3R_31138120_SNP [dm6]	G	A	1.128e^-4	0.978	INTRON Gycbeta100B
3L	20627442	3L_20627442_DEL [dm3] 3L_20634342_DEL [dm6]	ATA	C	1.131e^-4	0.978	DOWNSTREAM CR44681 EXON CR44682	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	6511662	3R_6511662_SNP [dm3] 3R_10685940_SNP [dm6]	A	C	1.137e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	6511669	3R_6511669_SNP [dm3] 3R_10685947_SNP [dm6]	T	C	1.137e^-4	0.978	UPSTREAM Skeletor INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	24819099	3R_24819099_SNP [dm3] 3R_28993377_SNP [dm6]	A	G	1.161e^-4	0.978	INTRON wat	TF binding site mE1_TFBS_HSA
X	5868727	X_5868727_SNP [dm3] X_5974694_SNP [dm6]	G	A	1.162e^-4	0.978	INTRON Grip
3L	1188054	3L_1188054_SNP [dm3] 3L_1188054_SNP [dm6]	T	C	1.171e^-4	0.978	INTERGENIC
X	15560909	X_15560909_SNP [dm3] X_15666876_SNP [dm6]	C	T	1.178e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	15560914	X_15560914_SNP [dm3] X_15666881_SNP [dm6]	T	C	1.178e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	14064292	3R_14064292_SNP [dm3] 3R_18238570_SNP [dm6]	G	A	1.181e^-4	0.978	SYNONYMOUS_CODING repo DOWNSTREAM CG7156	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23243314	3R_23243314_SNP [dm3] 3R_27417592_SNP [dm6]	A	T	1.197e^-4	0.978	INTRON side
2R	7424984	2R_7424984_INS [dm3] 2R_11537479_INS [dm6]	T	TT	1.198e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8918039	2R_8918039_SNP [dm3] 2R_13030534_SNP [dm6]	C	T	1.240e^-4	0.978	INTERGENIC
3R	14489801	3R_14489801_SNP [dm3] 3R_18664079_SNP [dm6]	G	A	1.251e^-4	0.978	UPSTREAM Cpsf73 INTRON Gos28	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	14490174	3R_14490174_SNP [dm3] 3R_18664452_SNP [dm6]	G	T	1.251e^-4	0.978	UPSTREAM Cpsf73 & 1 other INTRON Gos28
3R	14490184	3R_14490184_INS [dm3] 3R_18664462_INS [dm6]	A	AA	1.251e^-4	0.978	UPSTREAM Cpsf73 & 1 other INTRON Gos28
3R	14490227	3R_14490227_SNP [dm3] 3R_18664505_SNP [dm6]	G	T	1.251e^-4	0.978	UPSTREAM Cpsf73 & 1 other INTRON Gos28	TF binding site mE1_TFBS_cad
3R	14490260	3R_14490260_SNP [dm3] 3R_18664538_SNP [dm6]	C	G	1.251e^-4	0.978	UPSTREAM Cpsf73 & 1 other INTRON Gos28	TF binding site mE1_TFBS_cad
3R	14490268	3R_14490268_SNP [dm3] 3R_18664546_SNP [dm6]	A	G	1.251e^-4	0.978	UPSTREAM Cpsf73 & 1 other INTRON Gos28	TF binding site mE1_TFBS_cad
3L	8255890	3L_8255890_SNP [dm3] 3L_8262790_SNP [dm6]	G	T	1.256e^-4	0.978	INTRON Dscam4
X	9809234	X_9809234_SNP [dm3] X_9915201_SNP [dm6]	C	T	1.260e^-4	0.978	INTERGENIC
3L	6574867	3L_6574867_SNP [dm3] 3L_6581767_SNP [dm6]	G	C	1.263e^-4	0.978	INTRON CG18769 & 1 other
3L	6574872	3L_6574872_SNP [dm3] 3L_6581772_SNP [dm6]	G	T	1.263e^-4	0.978	INTRON CG18769 & 1 other
3L	6574873	3L_6574873_DEL [dm3] 3L_6581773_DEL [dm6]	GCCTTAACACCCTTGGG...	G	1.263e^-4	0.978	INTRON CG18769 & 1 other
3R	16020590	3R_16020590_SNP [dm3] 3R_20194868_SNP [dm6]	T	A	1.271e^-4	0.978	INTERGENIC
2R	14762269	2R_14762269_SNP [dm3] 2R_18874764_SNP [dm6]	G	C	1.273e^-4	0.978	INTERGENIC
X	5151506	X_5151506_SNP [dm3] X_5257473_SNP [dm6]	G	A	1.273e^-4	0.978	INTERGENIC
X	5151538	X_5151538_SNP [dm3] X_5257505_SNP [dm6]	C	A	1.273e^-4	0.978	INTERGENIC
X	9504940	X_9504940_SNP [dm3] X_9610907_SNP [dm6]	C	A	1.274e^-4	0.978	SYNONYMOUS_CODING CG42797	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6392352	2R_6392352_SNP [dm3] 2R_10504847_SNP [dm6]	G	T	1.275e^-4	0.978	DOWNSTREAM lola INTRON lola	TF binding site mE1_TFBS_HSA
2L	4335507	2L_4335507_SNP [dm3] 2L_4335507_SNP [dm6]	G	A	1.284e^-4	0.978	INTRON Atet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	12891020	3L_12891020_SNP [dm3] 3L_12897920_SNP [dm6]	G	T	1.296e^-4	0.978	INTERGENIC
3L	6379158	3L_6379158_SNP [dm3] 3L_6386058_SNP [dm6]	A	G	1.301e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	12433557	2R_12433557_SNP [dm3] 2R_16546052_SNP [dm6]	C	T	1.306e^-4	0.978	INTERGENIC
2R	11662731	2R_11662731_SNP [dm3] 2R_15775226_SNP [dm6]	T	C	1.307e^-4	0.978	SYNONYMOUS_CODING Zasp52 INTRON Zasp52	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20468837	2R_20468837_SNP [dm3] 2R_24581314_SNP [dm6]	T	A	1.312e^-4	0.978	UTR_5_PRIME pio	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	8717448	X_8717448_SNP [dm3] X_8823415_SNP [dm6]	T	A	1.318e^-4	0.978	INTERGENIC
2R	7295624	2R_7295624_SNP [dm3] 2R_11408119_SNP [dm6]	A	C	1.320e^-4	0.978	DOWNSTREAM CG30026 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
2L	19789032	2L_19789032_SNP [dm3] 2L_19789032_SNP [dm6]	G	A	1.336e^-4	0.978	INTRON CdGAPr
3R	14175845	3R_14175845_SNP [dm3] 3R_18350123_SNP [dm6]	T	A	1.347e^-4	0.978	INTRON CG15803
3R	14175846	3R_14175846_SNP [dm3] 3R_18350124_SNP [dm6]	C	A	1.347e^-4	0.978	INTRON CG15803
3R	20921511	3R_20921511_SNP [dm3] 3R_25095789_SNP [dm6]	T	C	1.347e^-4	0.978	SYNONYMOUS_CODING fd96Cb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	427841	3L_427841_SNP [dm3] 3L_427841_SNP [dm6]	C	T	1.358e^-4	0.978	INTERGENIC
2R	9695110	2R_9695110_SNP [dm3] 2R_13807605_SNP [dm6]	G	A	1.358e^-4	0.978	INTRON stj
3L	1266407	3L_1266407_SNP [dm3] 3L_1266407_SNP [dm6]	A	C	1.362e^-4	0.978	INTRON CG9134
X	16427662	X_16427662_SNP [dm3] X_16533629_SNP [dm6]	T	A	1.366e^-4	0.978	UPSTREAM para INTERGENIC
2R	2743601	2R_2743601_SNP [dm3] 2R_6856096_SNP [dm6]	C	A	1.371e^-4	0.978	INTERGENIC
3R	15965527	3R_15965527_SNP [dm3] 3R_20139805_SNP [dm6]	A	G	1.381e^-4	0.978	INTRON CR42836 EXON CR42836
2R	6557169	2R_6557169_SNP [dm3] 2R_10669664_SNP [dm6]	T	C	1.384e^-4	0.978	INTERGENIC	TF binding site mE1_TFBS_inv
2L	7903014	2L_7903014_SNP [dm3] 2L_7903014_SNP [dm6]	G	C	1.384e^-4	0.978	INTRON Snoo
2L	7903538	2L_7903538_SNP [dm3] 2L_7903538_SNP [dm6]	G	A	1.384e^-4	0.978	INTRON Snoo
2R	7420066	2R_7420066_SNP [dm3] 2R_11532561_SNP [dm6]	T	G	1.386e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	5974111	2R_5974111_SNP [dm3] 2R_10086606_SNP [dm6]	T	C	1.407e^-4	0.978	NON_SYNONYMOUS_CODING sut4 UPSTREAM CG2269 INTRON CG2269
X	4542095	X_4542095_SNP [dm3] X_4648062_SNP [dm6]	C	T	1.412e^-4	0.978	SYNONYMOUS_CODING mRpL30 UPSTREAM HLH4C DOWNSTREAM Torsin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	14490179	3R_14490179_SNP [dm3] 3R_18664457_SNP [dm6]	T	C	1.413e^-4	0.978	UPSTREAM Cpsf73 & 1 other INTRON Gos28
2R	14227947	2R_14227947_SNP [dm3] 2R_18340442_SNP [dm6]	C	G	1.424e^-4	0.978	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12349162	3L_12349162_SNP [dm3] 3L_12356062_SNP [dm6]	G	A	1.426e^-4	0.978	INTERGENIC
2L	3774131	2L_3774131_SNP [dm3] 2L_3774131_SNP [dm6]	C	G	1.430e^-4	0.978	INTRON bowl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9886823	2L_9886823_DEL [dm3] 2L_9886823_DEL [dm6]	AATAATATAAGTT...	A	1.444e^-4	0.978	UPSTREAM CR44701 & 1 other INTERGENIC
2R	13439124	2R_13439124_SNP [dm3] 2R_17551619_SNP [dm6]	G	T	1.454e^-4	0.978	SYNONYMOUS_CODING MESR4	TF binding site mE1_TFBS_cad
3R	14488942	3R_14488942_SNP [dm3] 3R_18663220_SNP [dm6]	G	A	1.459e^-4	0.978	SYNONYMOUS_CODING Cpsf73 UPSTREAM Gos28	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2R	17886906	2R_17886906_SNP [dm3] 2R_21999401_SNP [dm6]	T	C	1.478e^-4	0.978	INTRON CG34370
2R	11662923	2R_11662923_SNP [dm3] 2R_15775418_SNP [dm6]	G	A	1.481e^-4	0.978	SYNONYMOUS_CODING Zasp52 INTRON Zasp52	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13204182	3L_13204182_SNP [dm3] 3L_13211082_SNP [dm6]	G	C	1.483e^-4	0.978	UPSTREAM tRNA:CR32129 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1270024	3L_1270024_SNP [dm3] 3L_1270024_SNP [dm6]	C	T	1.486e^-4	0.978	INTRON CG9134
3L	1371486	3L_1371486_SNP [dm3] 3L_1371486_SNP [dm6]	C	T	1.490e^-4	0.978	INTRON Ptp61F & 1 other
X	2224660	X_2224660_SNP [dm3] X_2330627_SNP [dm6]	C	G	1.504e^-4	0.978	DOWNSTREAM Ilp6 INTRON phl EXON CR33218
X	15561187	X_15561187_DEL [dm3] X_15667154_DEL [dm6]	CACT	A	1.543e^-4	0.978	DOWNSTREAM CG15646 INTERGENIC	TF binding site mE1_TFBS_HSA
X	18953102	X_18953102_SNP [dm3] X_19059069_SNP [dm6]	C	T	1.545e^-4	0.978	INTRON CG14190
X	9504274	X_9504274_SNP [dm3] X_9610241_SNP [dm6]	C	A	1.555e^-4	0.978	SYNONYMOUS_CODING CG42797	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	2284466	X_2284466_SNP [dm3] X_2390433_SNP [dm6]	A	C	1.565e^-4	0.978	INTERGENIC
3R	14175944	3R_14175944_SNP [dm3] 3R_18350222_SNP [dm6]	G	T	1.569e^-4	0.978	INTRON CG15803
3R	25973021	3R_25973021_SNP [dm3] 3R_30147299_SNP [dm6]	T	C	1.572e^-4	0.978	INTRON AdoR
3L	2084775	3L_2084775_SNP [dm3] 3L_2084775_SNP [dm6]	A	G	1.575e^-4	0.978	NON_SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15031924	2L_15031924_SNP [dm3] 2L_15031924_SNP [dm6]	T	A	1.580e^-4	0.978	UPSTREAM CG31832 INTRON GABA-B-R1
2L	20039819	2L_20039819_SNP [dm3] 2L_20039819_SNP [dm6]	A	G	1.588e^-4	0.978	INTRON sNPF
2L	2657319	2L_2657319_SNP [dm3] 2L_2657319_SNP [dm6]	G	A	1.588e^-4	0.978	DOWNSTREAM Prosbeta4R2 INTERGENIC
2L	2657326	2L_2657326_INS [dm3] 2L_2657326_INS [dm6]	A	AA	1.588e^-4	0.978	DOWNSTREAM Prosbeta4R2 INTERGENIC
2L	4224713	2L_4224713_SNP [dm3] 2L_4224713_SNP [dm6]	G	A	1.595e^-4	0.978	UTR_3_PRIME CG3702	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	24819651	3R_24819651_SNP [dm3] 3R_28993929_SNP [dm6]	C	A	1.599e^-4	0.978	SYNONYMOUS_CODING wat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12144439	2L_12144439_SNP [dm3] 2L_12144439_SNP [dm6]	G	T	1.605e^-4	0.978	UPSTREAM CG31760 INTRON CG31760
3R	9990822	3R_9990822_SNP [dm3] 3R_14165100_SNP [dm6]	G	C	1.608e^-4	0.978	DOWNSTREAM Dop1R1 INTERGENIC
X	12186966	X_12186966_SNP [dm3] X_12292933_SNP [dm6]	C	T	1.613e^-4	0.978	INTRON Ten-a
3R	4585151	3R_4585151_SNP [dm3] 3R_8759429_SNP [dm6]	C	G	1.630e^-4	0.978	INTRON CG11768 & 1 other
2R	12418549	2R_12418549_SNP [dm3] 2R_16531044_SNP [dm6]	G	A	1.641e^-4	0.978	SYNONYMOUS_CODING Sema-2a	TF binding site BDTNP1_TFBS_twi
2R	19936068	2R_19936068_SNP [dm3] 2R_24048545_SNP [dm6]	A	C	1.649e^-4	0.978	UPSTREAM sei INTRON sei & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	19936141	2R_19936141_SNP [dm3] 2R_24048618_SNP [dm6]	C	T	1.649e^-4	0.978	UPSTREAM sei INTRON sei & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	20609731	3L_20609731_SNP [dm3] 3L_20616631_SNP [dm6]	A	C	1.653e^-4	0.978	INTRON knrl
3R	25520527	3R_25520527_SNP [dm3] 3R_29694805_SNP [dm6]	G	T	1.660e^-4	0.978	INTRON dmrt99B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd
X	4541308	X_4541308_SNP [dm3] X_4647275_SNP [dm6]	C	T	1.664e^-4	0.978	UPSTREAM mRpL30 INTRON HLH4C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12392099	2R_12392099_SNP [dm3] 2R_16504594_SNP [dm6]	C	A	1.665e^-4	0.978	INTRON Sema-2a
3L	14434603	3L_14434603_SNP [dm3] 3L_14441503_SNP [dm6]	T	G	1.668e^-4	0.978	INTRON bbg
2L	9633603	2L_9633603_SNP [dm3] 2L_9633603_SNP [dm6]	T	A	1.672e^-4	0.978	UPSTREAM Apoltp INTERGENIC
2L	10819261	2L_10819261_SNP [dm3] 2L_10819261_SNP [dm6]	T	G	1.681e^-4	0.978	NON_SYNONYMOUS_CODING CG6508 INTRON Nos
2L	5993556	2L_5993556_SNP [dm3] 2L_5993556_SNP [dm6]	G	T	1.687e^-4	0.978	SYNONYMOUS_CODING lid	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2963785	3L_2963785_SNP [dm3] 3L_2963785_SNP [dm6]	A	G	1.697e^-4	0.978	UTR_3_PRIME Or63a
3L	6379579	3L_6379579_SNP [dm3] 3L_6386479_SNP [dm6]	A	T	1.701e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	9466018	2R_9466018_INS [dm3] 2R_13578513_INS [dm6]	C	CC	1.703e^-4	0.978	DOWNSTREAM CR44365 EXON CR44366	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	1787502	2R_1787502_SNP [dm3] 2R_5899997_SNP [dm6]	A	G	1.709e^-4	0.978	INTRON CG43366	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	13204589	3L_13204589_SNP [dm3] 3L_13211489_SNP [dm6]	T	C	1.747e^-4	0.978	UPSTREAM tRNA:CR32128 & 1 other DOWNSTREAM tRNA:CR32129 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17076739	2R_17076739_SNP [dm3] 2R_21189234_SNP [dm6]	A	G	1.754e^-4	0.978	SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_sens
3L	1358011	3L_1358011_SNP [dm3] 3L_1358011_SNP [dm6]	T	C	1.754e^-4	0.978	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	6358552	2R_6358552_SNP [dm3] 2R_10471047_SNP [dm6]	C	T	1.755e^-4	0.978	INTRON whd
2R	6391784	2R_6391784_SNP [dm3] 2R_10504279_SNP [dm6]	G	A	1.766e^-4	0.978	DOWNSTREAM lola INTRON lola
2R	11662174	2R_11662174_SNP [dm3] 2R_15774669_SNP [dm6]	G	A	1.776e^-4	0.978	NON_SYNONYMOUS_CODING Zasp52 UTR_5_PRIME Zasp52 INTRON Zasp52	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14175720	3R_14175720_SNP [dm3] 3R_18349998_SNP [dm6]	T	C	1.788e^-4	0.978	INTRON CG15803
2R	3011277	2R_3011277_DEL [dm3] 2R_7123772_DEL [dm6]	GGTGGCTCTGTGGTGGCGTC...	G	1.793e^-4	0.978	INTRON esn	TF binding site mE1_TFBS_cad
3L	11193198	3L_11193198_SNP [dm3] 3L_11200098_SNP [dm6]	A	G	1.794e^-4	0.978	INTRON Plod & 1 other
2R	12433401	2R_12433401_SNP [dm3] 2R_16545896_SNP [dm6]	C	G	1.797e^-4	0.978	INTERGENIC
3R	9973092	3R_9973092_SNP [dm3] 3R_14147370_SNP [dm6]	A	T	1.802e^-4	0.978	INTERGENIC
3L	20612202	3L_20612202_SNP [dm3] 3L_20619102_SNP [dm6]	G	A	1.804e^-4	0.978	INTRON knrl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	13204177	3L_13204177_SNP [dm3] 3L_13211077_SNP [dm6]	G	T	1.829e^-4	0.978	UPSTREAM tRNA:CR32129 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15108178	X_15108178_SNP [dm3] X_15214145_SNP [dm6]	G	A	1.833e^-4	0.978	INTERGENIC
X	15108324	X_15108324_SNP [dm3] X_15214291_SNP [dm6]	C	T	1.833e^-4	0.978	INTERGENIC
3R	10856448	3R_10856448_SNP [dm3] 3R_15030726_SNP [dm6]	G	A	1.841e^-4	0.978	INTERGENIC
2L	3774251	2L_3774251_SNP [dm3] 2L_3774251_SNP [dm6]	C	T	1.846e^-4	0.978	INTRON bowl	TF binding site mE1_TFBS_HSA
2L	3774254	2L_3774254_SNP [dm3] 2L_3774254_SNP [dm6]	G	T	1.846e^-4	0.978	INTRON bowl	TF binding site mE1_TFBS_HSA
2L	9844195	2L_9844195_SNP [dm3] 2L_9844195_SNP [dm6]	T	G	1.860e^-4	0.978	INTRON nAChRalpha6
2R	5876327	2R_5876327_SNP [dm3] 2R_9988822_SNP [dm6]	T	A	1.868e^-4	0.978	UPSTREAM TER94 EXON CR45324	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	1389275	X_1389275_SNP [dm3] X_1495242_SNP [dm6]	G	C	1.868e^-4	0.978	INTRON inc & 1 other	TF binding site mE1_TFBS_chinmo
3L	8024440	3L_8024440_SNP [dm3] 3L_8031340_SNP [dm6]	A	G	1.873e^-4	0.978	INTRON nmo
3L	9417765	3L_9417765_SNP [dm3] 3L_9424665_SNP [dm6]	G	A	1.873e^-4	0.978	UTR_3_PRIME aay INTRON CG3967	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	9417769	3L_9417769_SNP [dm3] 3L_9424669_SNP [dm6]	G	A	1.873e^-4	0.978	UTR_3_PRIME aay INTRON CG3967	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	22406506	X_22406506_SNP [dm3] X_23004670_SNP [dm6]	G	T	1.879e^-4	0.978	UPSTREAM stnA & 1 other INTERGENIC
3R	18693758	3R_18693758_SNP [dm3] 3R_22868036_SNP [dm6]	C	T	1.911e^-4	0.978	INTERGENIC
X	16657129	X_16657129_SNP [dm3] X_16763096_SNP [dm6]	G	A	1.920e^-4	0.978	INTRON if	TF binding site BDTNP1_TFBS_twi
2R	5667793	2R_5667793_INS [dm3] 2R_9780288_INS [dm6]	G	GACG	1.923e^-4	0.978	INTRON CG1688
2L	14894064	2L_14894064_SNP [dm3] 2L_14894064_SNP [dm6]	C	T	1.933e^-4	0.978	INTERGENIC
2L	14894065	2L_14894065_SNP [dm3] 2L_14894065_SNP [dm6]	T	C	1.933e^-4	0.978	INTERGENIC
2R	8360544	2R_8360544_SNP [dm3] 2R_12473039_SNP [dm6]	T	C	1.958e^-4	0.978	SYNONYMOUS_CODING CG8550
3R	25340197	3R_25340197_SNP [dm3] 3R_29514475_SNP [dm6]	T	C	1.959e^-4	0.978	INTERGENIC
2R	14851680	2R_14851680_SNP [dm3] 2R_18964175_SNP [dm6]	A	G	1.962e^-4	0.978	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	12214916	X_12214916_SNP [dm3] X_12320883_SNP [dm6]	G	A	1.966e^-4	0.978	INTRON Ten-a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12214923	X_12214923_SNP [dm3] X_12320890_SNP [dm6]	C	G	1.966e^-4	0.978	INTRON Ten-a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5965921	2L_5965921_SNP [dm3] 2L_5965921_SNP [dm6]	G	A	1.978e^-4	0.978	SYNONYMOUS_CODING CG13992 UPSTREAM psd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16540819	3L_16540819_SNP [dm3] 3L_16547719_SNP [dm6]	G	A	1.980e^-4	0.978	INTERGENIC
2L	4335502	2L_4335502_SNP [dm3] 2L_4335502_SNP [dm6]	A	G	1.990e^-4	0.978	INTRON Atet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	1017953	2L_1017953_SNP [dm3] 2L_1017953_SNP [dm6]	T	C	1.997e^-4	0.978	INTRON IA-2
3L	5055837	3L_5055837_SNP [dm3] 3L_5055837_SNP [dm6]	T	G	2.003e^-4	0.978	INTRON Con
2R	17357485	2R_17357485_SNP [dm3] 2R_21469980_SNP [dm6]	C	T	2.010e^-4	0.978	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
2R	12073958	2R_12073958_SNP [dm3] 2R_16186453_SNP [dm6]	A	T	2.017e^-4	0.978	UTR_5_PRIME CG8441 UPSTREAM clu & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Ubx
X	8709332	X_8709332_SNP [dm3] X_8815299_SNP [dm6]	G	A	2.018e^-4	0.978	INTERGENIC
X	7669986	X_7669986_SNP [dm3] X_7775953_SNP [dm6]	C	T	2.028e^-4	0.978	INTERGENIC
2L	9968121	2L_9968121_SNP [dm3] 2L_9968121_SNP [dm6]	G	A	2.030e^-4	0.978	SYNONYMOUS_CODING RpL13 UPSTREAM Dref	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2R	9466013	2R_9466013_SNP [dm3] 2R_13578508_SNP [dm6]	T	C	2.050e^-4	0.978	DOWNSTREAM CR44365 EXON CR44366	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26956887	3R_26956887_SNP [dm3] 3R_31131165_SNP [dm6]	T	C	2.056e^-4	0.978	UPSTREAM CG15556 INTERGENIC
3R	26956888	3R_26956888_SNP [dm3] 3R_31131166_SNP [dm6]	C	G	2.056e^-4	0.978	UPSTREAM CG15556 INTERGENIC
3R	12600370	3R_12600370_SNP [dm3] 3R_16774648_SNP [dm6]	C	A	2.057e^-4	0.978	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	20795721	3L_20795721_SNP [dm3] 3L_20802621_SNP [dm6]	A	G	2.060e^-4	0.978	NON_SYNONYMOUS_CODING Spc105R
2L	5965903	2L_5965903_SNP [dm3] 2L_5965903_SNP [dm6]	G	A	2.062e^-4	0.978	SYNONYMOUS_CODING CG13992 UPSTREAM psd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	2399609	X_2399609_SNP [dm3] X_2505576_SNP [dm6]	T	G	2.073e^-4	0.978	UPSTREAM trol INTRON trol	TF binding site mE1_TFBS_cad
3L	13879343	3L_13879343_SNP [dm3] 3L_13886243_SNP [dm6]	G	A	2.077e^-4	0.978	SYNONYMOUS_CODING dysc	TF binding site mE1_TFBS_cad
2L	7333427	2L_7333427_SNP [dm3] 2L_7333427_SNP [dm6]	A	C	2.087e^-4	0.978	UPSTREAM Wnt6 INTERGENIC
2R	12433034	2R_12433034_SNP [dm3] 2R_16545529_SNP [dm6]	G	A	2.097e^-4	0.978	INTERGENIC
3L	20632662	3L_20632662_SNP [dm3] 3L_20639562_SNP [dm6]	A	T	2.098e^-4	0.978	NON_SYNONYMOUS_CODING CG13251	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2963783	3L_2963783_SNP [dm3] 3L_2963783_SNP [dm6]	T	A	2.131e^-4	0.978	UTR_3_PRIME Or63a
X	12213727	X_12213727_SNP [dm3] X_12319694_SNP [dm6]	G	A	2.131e^-4	0.978	INTRON Ten-a
X	4467615	X_4467615_SNP [dm3] X_4573582_SNP [dm6]	T	A	2.139e^-4	0.978	INTRON CR32773	TF binding site BDTNP1_TFBS_dl
2L	14893919	2L_14893919_SNP [dm3] 2L_14893919_SNP [dm6]	G	A	2.139e^-4	0.978	INTERGENIC
2L	14893940	2L_14893940_SNP [dm3] 2L_14893940_SNP [dm6]	G	A	2.139e^-4	0.978	INTERGENIC
2L	14893947	2L_14893947_SNP [dm3] 2L_14893947_SNP [dm6]	C	T	2.139e^-4	0.978	INTERGENIC
2L	14893948	2L_14893948_SNP [dm3] 2L_14893948_SNP [dm6]	T	C	2.139e^-4	0.978	INTERGENIC
3L	13204922	3L_13204922_SNP [dm3] 3L_13211822_SNP [dm6]	G	T	2.158e^-4	0.978	UPSTREAM tRNA:CR32126 DOWNSTREAM tRNA:CR32129 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13204928	3L_13204928_SNP [dm3] 3L_13211828_SNP [dm6]	A	T	2.158e^-4	0.978	UPSTREAM tRNA:CR32126 DOWNSTREAM tRNA:CR32129 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13204931	3L_13204931_SNP [dm3] 3L_13211831_SNP [dm6]	G	A	2.158e^-4	0.978	UPSTREAM tRNA:CR32126 DOWNSTREAM tRNA:CR32129 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15154207	X_15154207_SNP [dm3] X_15260174_SNP [dm6]	C	T	2.161e^-4	0.978	INTERGENIC
X	15154209	X_15154209_SNP [dm3] X_15260176_SNP [dm6]	A	C	2.161e^-4	0.978	INTERGENIC
X	15154210	X_15154210_SNP [dm3] X_15260177_SNP [dm6]	A	T	2.161e^-4	0.978	INTERGENIC
2L	8718965	2L_8718965_SNP [dm3] 2L_8718965_SNP [dm6]	G	A	2.169e^-4	0.978	INTRON raw	TF binding site mE1_TFBS_Trl
3R	26963526	3R_26963526_SNP [dm3] 3R_31137804_SNP [dm6]	G	A	2.174e^-4	0.978	INTRON Gycbeta100B
3L	4457622	3L_4457622_SNP [dm3] 3L_4457622_SNP [dm6]	A	C	2.185e^-4	0.978	NON_SYNONYMOUS_CODING CG11345
2R	6232834	2R_6232834_SNP [dm3] 2R_10345329_SNP [dm6]	T	A	2.186e^-4	0.978	INTRON CG42732
2L	10812052	2L_10812052_SNP [dm3] 2L_10812052_SNP [dm6]	C	T	2.191e^-4	0.978	INTRON Nos
2L	8975274	2L_8975274_SNP [dm3] 2L_8975274_SNP [dm6]	T	A	2.198e^-4	0.978	UTR_5_PRIME CG9541 UPSTREAM CG9541	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	14631909	X_14631909_SNP [dm3] X_14737876_SNP [dm6]	C	T	2.200e^-4	0.978	INTRON NetB
X	16003668	X_16003668_SNP [dm3] X_16109635_SNP [dm6]	T	C	2.205e^-4	0.978	INTERGENIC
2R	13867708	2R_13867708_SNP [dm3] 2R_17980203_SNP [dm6]	C	G	2.223e^-4	0.978	INTRON dpr13
2L	7903161	2L_7903161_SNP [dm3] 2L_7903161_SNP [dm6]	C	T	2.236e^-4	0.978	INTRON Snoo
2L	7903205	2L_7903205_SNP [dm3] 2L_7903205_SNP [dm6]	T	A	2.236e^-4	0.978	INTRON Snoo
2L	7903434	2L_7903434_SNP [dm3] 2L_7903434_SNP [dm6]	T	C	2.236e^-4	0.978	INTRON Snoo
2L	7904122	2L_7904122_SNP [dm3] 2L_7904122_SNP [dm6]	G	A	2.236e^-4	0.978	INTRON Snoo
2L	7904259	2L_7904259_SNP [dm3] 2L_7904259_SNP [dm6]	C	T	2.236e^-4	0.978	INTRON Snoo
3L	10882004	3L_10882004_SNP [dm3] 3L_10888904_SNP [dm6]	A	T	2.239e^-4	0.978	INTERGENIC
3L	6574926	3L_6574926_SNP [dm3] 3L_6581826_SNP [dm6]	T	A	2.239e^-4	0.978	INTRON CG18769 & 1 other
3L	1188977	3L_1188977_SNP [dm3] 3L_1188977_SNP [dm6]	G	A	2.240e^-4	0.978	UPSTREAM CG13912 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2L	10516131	2L_10516131_SNP [dm3] 2L_10516131_SNP [dm6]	T	A	2.246e^-4	0.978	INTRON Fatp & 1 other	TF binding site BDTNP1_TFBS_dl
3R	14489814	3R_14489814_SNP [dm3] 3R_18664092_SNP [dm6]	G	C	2.256e^-4	0.978	UPSTREAM Cpsf73 INTRON Gos28	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	20100094	2L_20100094_SNP [dm3] 2L_20100094_SNP [dm6]	C	A	2.257e^-4	0.978	INTRON Kua
2R	5098957	2R_5098957_SNP [dm3] 2R_9211452_SNP [dm6]	C	T	2.257e^-4	0.978	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	7169618	2L_7169618_SNP [dm3] 2L_7169618_SNP [dm6]	G	C	2.261e^-4	0.978	INTERGENIC
2R	12082156	2R_12082156_SNP [dm3] 2R_16194651_SNP [dm6]	A	G	2.266e^-4	0.978	SYNONYMOUS_CODING calypso DOWNSTREAM clu	TF binding site mE1_TFBS_cad
3R	12318165	3R_12318165_SNP [dm3] 3R_16492443_SNP [dm6]	G	A	2.275e^-4	0.978	SYNONYMOUS_CODING Cad89D
2R	14706370	2R_14706370_SNP [dm3] 2R_18818865_SNP [dm6]	G	T	2.278e^-4	0.978	UPSTREAM Phb2 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	14490075	3R_14490075_SNP [dm3] 3R_18664353_SNP [dm6]	T	A	2.278e^-4	0.978	UPSTREAM Cpsf73 INTRON Gos28
2L	19991729	2L_19991729_SNP [dm3] 2L_19991729_SNP [dm6]	A	G	2.284e^-4	0.978	INTRON CG43861
3R	3891806	3R_3891806_SNP [dm3] 3R_8066084_SNP [dm6]	C	T	2.285e^-4	0.978	INTRON mAChR-B
3L	6556486	3L_6556486_SNP [dm3] 3L_6563386_SNP [dm6]	A	G	2.291e^-4	0.978	UTR_3_PRIME jv INTRON CG18769	TF binding site mE1_TFBS_cad
2R	9210360	2R_9210360_SNP [dm3] 2R_13322855_SNP [dm6]	C	G	2.293e^-4	0.978	INTERGENIC
3R	12450619	3R_12450619_SNP [dm3] 3R_16624897_SNP [dm6]	C	T	2.295e^-4	0.978	UPSTREAM Fas1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu
X	9940817	X_9940817_SNP [dm3] X_10046784_SNP [dm6]	C	T	2.299e^-4	0.978	INTRON Cht6 EXON CR45185 & 1 other
2L	9857580	2L_9857580_SNP [dm3] 2L_9857580_SNP [dm6]	G	A	2.317e^-4	0.978	INTRON nAChRalpha6
2L	11607807	2L_11607807_SNP [dm3] 2L_11607807_SNP [dm6]	A	G	2.324e^-4	0.978	INTRON kek2	TF binding site mE1_TFBS_Ubx
2L	11607816	2L_11607816_SNP [dm3] 2L_11607816_SNP [dm6]	G	T	2.324e^-4	0.978	INTRON kek2	TF binding site mE1_TFBS_Ubx
X	9504613	X_9504613_SNP [dm3] X_9610580_SNP [dm6]	G	A	2.336e^-4	0.978	SYNONYMOUS_CODING CG42797	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	12214984	X_12214984_SNP [dm3] X_12320951_SNP [dm6]	C	A	2.343e^-4	0.978	INTRON Ten-a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15764947	3R_15764947_SNP [dm3] 3R_19939225_SNP [dm6]	C	A	2.352e^-4	0.978	INTRON Hs6st
2L	5070794	2L_5070794_SNP [dm3] 2L_5070794_SNP [dm6]	T	C	2.354e^-4	0.978	UPSTREAM RpL37A DOWNSTREAM CR45305 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
2L	5070847	2L_5070847_MNP [dm3] 2L_5070847_MNP [dm6]	ATGA	TATG	2.354e^-4	0.978	UPSTREAM RpL37A DOWNSTREAM CR45305 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
2L	5070861	2L_5070861_SNP [dm3] 2L_5070861_SNP [dm6]	C	A	2.354e^-4	0.978	UPSTREAM RpL37A DOWNSTREAM CR45305 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
2L	3279993	2L_3279993_SNP [dm3] 2L_3279993_SNP [dm6]	A	T	2.359e^-4	0.978	UPSTREAM CG3332 INTRON CG3332
3L	7178185	3L_7178185_SNP [dm3] 3L_7185085_SNP [dm6]	G	T	2.366e^-4	0.978	INTRON Dscam2
2R	9695116	2R_9695116_SNP [dm3] 2R_13807611_SNP [dm6]	C	A	2.373e^-4	0.978	INTRON stj
3L	20596591	3L_20596591_SNP [dm3] 3L_20603491_SNP [dm6]	T	A	2.377e^-4	0.978	INTRON knrl	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11148117	2L_11148117_SNP [dm3] 2L_11148117_SNP [dm6]	A	C	2.383e^-4	0.978	INTRON Gyc32E
2R	15971539	2R_15971539_SNP [dm3] 2R_20084034_SNP [dm6]	G	A	2.384e^-4	0.978	UPSTREAM CR44632 INTERGENIC
2R	18442651	2R_18442651_SNP [dm3] 2R_22555146_SNP [dm6]	C	A	2.388e^-4	0.978	INTRON px	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3279963	2L_3279963_SNP [dm3] 2L_3279963_SNP [dm6]	A	T	2.390e^-4	0.978	UPSTREAM CG3332 INTRON CG3332
3R	14490030	3R_14490030_SNP [dm3] 3R_18664308_SNP [dm6]	T	A	2.394e^-4	0.978	UPSTREAM Cpsf73 INTRON Gos28	TF binding site BDTNP1_TFBS_dl
3R	14490058	3R_14490058_SNP [dm3] 3R_18664336_SNP [dm6]	C	T	2.394e^-4	0.978	UPSTREAM Cpsf73 INTRON Gos28
3R	14175917	3R_14175917_DEL [dm3] 3R_18350195_DEL [dm6]	ATGGA	A	2.433e^-4	0.978	INTRON CG15803
3L	2963806	3L_2963806_SNP [dm3] 3L_2963806_SNP [dm6]	T	G	2.439e^-4	0.978	DOWNSTREAM Or63a INTERGENIC
3L	2963812	3L_2963812_SNP [dm3] 3L_2963812_SNP [dm6]	T	A	2.439e^-4	0.978	DOWNSTREAM Or63a INTERGENIC
3L	3534640	3L_3534640_SNP [dm3] 3L_3534640_SNP [dm6]	T	C	2.440e^-4	0.978	INTRON Eip63E
2R	19935682	2R_19935682_SNP [dm3] 2R_24048159_SNP [dm6]	G	A	2.442e^-4	0.978	SYNONYMOUS_CODING gammaSnap1 INTRON sei	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	7102283	2L_7102283_SNP [dm3] 2L_7102283_SNP [dm6]	A	T	2.454e^-4	0.978	INTRON Pvf3
2L	14695811	2L_14695811_SNP [dm3] 2L_14695811_SNP [dm6]	G	C	2.456e^-4	0.978	INTERGENIC
2R	12392092	2R_12392092_SNP [dm3] 2R_16504587_SNP [dm6]	C	A	2.458e^-4	0.978	INTRON Sema-2a
X	13261234	X_13261234_INS [dm3] X_13367201_INS [dm6]	C	CCATCCA	2.462e^-4	0.978	UTR_3_PRIME Syt12 UPSTREAM dmrt11E
3R	22309334	3R_22309334_SNP [dm3] 3R_26483612_SNP [dm6]	G	T	2.466e^-4	0.978	INTRON plum
3R	14049090	3R_14049090_SNP [dm3] 3R_18223368_SNP [dm6]	C	G	2.467e^-4	0.978	SYNONYMOUS_CODING mTerf5 UPSTREAM CG7993	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	11663131	2R_11663131_SNP [dm3] 2R_15775626_SNP [dm6]	T	A	2.471e^-4	0.978	INTRON Zasp52	TF binding site mE1_TFBS_chinmo
2R	14531701	2R_14531701_INS [dm3] 2R_18644196_INS [dm6]	A	ACTGATA	2.472e^-4	0.978	INTRON SP2637
2R	15508934	2R_15508934_SNP [dm3] 2R_19621429_SNP [dm6]	A	C	2.475e^-4	0.978	INTRON sm
2L	1359422	2L_1359422_SNP [dm3] 2L_1359422_SNP [dm6]	A	G	2.478e^-4	0.978	SPLICE_SITE_REGION CG31659 DOWNSTREAM NLaz INTRON CG31659
3R	9996796	3R_9996796_SNP [dm3] 3R_14171074_SNP [dm6]	G	A	2.484e^-4	0.978	UTR_3_PRIME Dop1R1
2R	20496424	2R_20496424_SNP [dm3] 2R_24608901_SNP [dm6]	A	C	2.485e^-4	0.978	DOWNSTREAM CG42361 INTRON CG42360
3R	8374419	3R_8374419_SNP [dm3] 3R_12548697_SNP [dm6]	A	T	2.501e^-4	0.978	UPSTREAM Octbeta3R INTERGENIC
2L	8044273	2L_8044273_SNP [dm3] 2L_8044273_SNP [dm6]	C	T	2.518e^-4	0.978	INTRON CG7466	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	20921814	3R_20921814_SNP [dm3] 3R_25096092_SNP [dm6]	C	T	2.518e^-4	0.978	UTR_3_PRIME fd96Cb	TF binding site BDTNP1_TFBS_dl
2L	7913966	2L_7913966_SNP [dm3] 2L_7913966_SNP [dm6]	C	T	2.523e^-4	0.978	INTRON Snoo
2R	15971533	2R_15971533_SNP [dm3] 2R_20084028_SNP [dm6]	C	G	2.530e^-4	0.978	UPSTREAM CR44632 INTERGENIC
2L	4335504	2L_4335504_SNP [dm3] 2L_4335504_SNP [dm6]	G	A	2.539e^-4	0.978	INTRON Atet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	19175453	2L_19175453_SNP [dm3] 2L_19175453_SNP [dm6]	G	T	2.548e^-4	0.978	UTR_3_PRIME brat INTRON brat
3L	8024424	3L_8024424_SNP [dm3] 3L_8031324_SNP [dm6]	T	C	2.548e^-4	0.978	INTRON nmo
2R	12433561	2R_12433561_SNP [dm3] 2R_16546056_SNP [dm6]	T	A	2.563e^-4	0.978	INTERGENIC
3R	14611846	3R_14611846_SNP [dm3] 3R_18786124_SNP [dm6]	C	T	2.568e^-4	0.978	INTRON CG7720
2R	19960168	2R_19960168_SNP [dm3] 2R_24072645_SNP [dm6]	G	A	2.576e^-4	0.978	INTRON CG3209
3L	11171067	3L_11171067_SNP [dm3] 3L_11177967_SNP [dm6]	C	T	2.576e^-4	0.978	UTR_3_PRIME GlcAT-P
3R	23882291	3R_23882291_SNP [dm3] 3R_28056569_SNP [dm6]	A	C	2.584e^-4	0.978	INTRON CG34362
3L	1182221	3L_1182221_SNP [dm3] 3L_1182221_SNP [dm6]	T	A	2.585e^-4	0.978	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10227062	2R_10227062_SNP [dm3] 2R_14339557_SNP [dm6]	T	C	2.606e^-4	0.978	INTRON Shroom
X	15154221	X_15154221_SNP [dm3] X_15260188_SNP [dm6]	T	C	2.620e^-4	0.978	INTERGENIC
2L	15251916	2L_15251916_SNP [dm3] 2L_15251916_SNP [dm6]	C	A	2.625e^-4	0.978	SYNONYMOUS_CODING dao	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	2670566	X_2670566_SNP [dm3] X_2776533_SNP [dm6]	C	T	2.626e^-4	0.978	INTRON kirre
2R	12311473	2R_12311473_SNP [dm3] 2R_16423968_SNP [dm6]	T	C	2.642e^-4	0.978	INTRON Sema-2b
2R	13398205	2R_13398205_DEL [dm3] 2R_17510700_DEL [dm6]	AACTAATAACTTA...	A	2.643e^-4	0.978	UTR_3_PRIME CG34193 UPSTREAM CG4847
X	13683917	X_13683917_SNP [dm3] X_13789884_SNP [dm6]	C	T	2.654e^-4	0.978	DOWNSTREAM CG10993 INTRON inaE
X	4467407	X_4467407_INS [dm3] X_4573374_INS [dm6]	G	GATGG	2.654e^-4	0.978	INTRON CR32773
2L	18884093	2L_18884093_SNP [dm3] 2L_18884093_SNP [dm6]	A	C	2.655e^-4	0.978	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	16449068	3L_16449068_SNP [dm3] 3L_16455968_SNP [dm6]	T	C	2.663e^-4	0.978	INTRON CG33158	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19109194	2L_19109194_SNP [dm3] 2L_19109194_SNP [dm6]	T	C	2.671e^-4	0.978	UPSTREAM Lim3 & 1 other EXON CR44905
3R	24482470	3R_24482470_SNP [dm3] 3R_28656748_SNP [dm6]	G	A	2.689e^-4	0.978	INTERGENIC
2R	13398204	2R_13398204_SNP [dm3] 2R_17510699_SNP [dm6]	T	A	2.689e^-4	0.978	UTR_3_PRIME CG34193 UPSTREAM CG4847
3R	10884082	3R_10884082_SNP [dm3] 3R_15058360_SNP [dm6]	G	T	2.693e^-4	0.978	INTRON dpr9
3R	22961782	3R_22961782_SNP [dm3] 3R_27136060_SNP [dm6]	G	A	2.696e^-4	0.978	INTRON CG6051
3R	17795511	3R_17795511_SNP [dm3] 3R_21969789_SNP [dm6]	A	T	2.697e^-4	0.978	INTRON Eip93F
2L	7906844	2L_7906844_SNP [dm3] 2L_7906844_SNP [dm6]	T	A	2.710e^-4	0.978	INTRON Snoo
2L	7907494	2L_7907494_SNP [dm3] 2L_7907494_SNP [dm6]	T	A	2.710e^-4	0.978	INTRON Snoo	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	2963716	3L_2963716_INS [dm3] 3L_2963716_INS [dm6]	G	TGCACACTAAAAGA...	2.725e^-4	0.978	UTR_3_PRIME Or63a
3L	5395809	3L_5395809_SNP [dm3] 3L_5402709_SNP [dm6]	A	T	2.731e^-4	0.978	INTERGENIC
2L	12909485	2L_12909485_SNP [dm3] 2L_12909485_SNP [dm6]	T	A	2.736e^-4	0.978	INTERGENIC
2R	15711690	2R_15711690_SNP [dm3] 2R_19824185_SNP [dm6]	T	A	2.738e^-4	0.978	INTERGENIC
3L	21105894	3L_21105894_SNP [dm3] 3L_21112794_SNP [dm6]	T	C	2.755e^-4	0.978	INTRON ko	regulatory region REDfly_CRMs
2R	6058316	2R_6058316_SNP [dm3] 2R_10170811_SNP [dm6]	T	C	2.756e^-4	0.978	INTRON KCNQ
2R	1001426	2R_1001426_SNP [dm3] 2R_5113921_SNP [dm6]	G	A	2.760e^-4	0.978	INTERGENIC	transposable element FlyBase
3L	9192581	3L_9192581_SNP [dm3] 3L_9199481_SNP [dm6]	T	C	2.760e^-4	0.978	INTERGENIC
3L	21832003	3L_21832003_SNP [dm3] 3L_21838903_SNP [dm6]	G	T	2.765e^-4	0.978	SYNONYMOUS_CODING P5CDh1
2L	19290339	2L_19290339_SNP [dm3] 2L_19290339_SNP [dm6]	A	T	2.774e^-4	0.978	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	10894588	X_10894588_DEL [dm3] X_11000555_DEL [dm6]	ATGTC	T	2.778e^-4	0.978	INTRON CG42339
X	10894598	X_10894598_DEL [dm3] X_11000565_DEL [dm6]	AAATAT	GG	2.778e^-4	0.978	INTRON CG42339
3L	7070169	3L_7070169_SNP [dm3] 3L_7077069_SNP [dm6]	T	A	2.796e^-4	0.978	INTRON CG8641
X	5727943	X_5727943_SNP [dm3] X_5833910_SNP [dm6]	A	G	2.824e^-4	0.978	INTRON CG15765
2R	11663134	2R_11663134_SNP [dm3] 2R_15775629_SNP [dm6]	T	A	2.826e^-4	0.978	INTRON Zasp52	TF binding site mE1_TFBS_chinmo
3R	17912900	3R_17912900_SNP [dm3] 3R_22087178_SNP [dm6]	C	T	2.835e^-4	0.978	START_GAINED CG5791 UTR_5_PRIME CG5791 UPSTREAM CG5778 INTRON CG5778
3L	10378998	3L_10378998_INS [dm3] 3L_10385898_INS [dm6]	A	AA	2.849e^-4	0.978	UPSTREAM CR45245 INTERGENIC
2R	14616866	2R_14616866_SNP [dm3] 2R_18729361_SNP [dm6]	C	A	2.857e^-4	0.978	SYNONYMOUS_CODING List INTRON Hs3st-A
2R	17656550	2R_17656550_SNP [dm3] 2R_21769045_SNP [dm6]	C	T	2.857e^-4	0.978	NON_SYNONYMOUS_CODING CG30395
3R	22351647	3R_22351647_SNP [dm3] 3R_26525925_SNP [dm6]	G	A	2.862e^-4	0.978	INTRON plum	TF binding site mE1_TFBS_cnc
2L	8412941	2L_8412941_SNP [dm3] 2L_8412941_SNP [dm6]	C	T	2.884e^-4	0.978	UTR_3_PRIME CG13398
2R	14462492	2R_14462492_SNP [dm3] 2R_18574987_SNP [dm6]	C	T	2.897e^-4	0.978	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1368319	2L_1368319_SNP [dm3] 2L_1368319_SNP [dm6]	T	A	2.930e^-4	0.978	SPLICE_SITE_REGION CG14346 INTRON CG14346	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	4242813	X_4242813_SNP [dm3] X_4348780_SNP [dm6]	A	T	2.934e^-4	0.978	INTRON norpA
2R	6058420	2R_6058420_SNP [dm3] 2R_10170915_SNP [dm6]	G	A	2.942e^-4	0.978	INTRON KCNQ
2R	6058608	2R_6058608_SNP [dm3] 2R_10171103_SNP [dm6]	A	T	2.942e^-4	0.978	INTRON KCNQ
3R	24469931	3R_24469931_SNP [dm3] 3R_28644209_SNP [dm6]	A	G	2.946e^-4	0.978	INTERGENIC
2R	19399496	2R_19399496_SNP [dm3] 2R_23511973_SNP [dm6]	A	G	2.958e^-4	0.978	SYNONYMOUS_CODING CG3906	TF binding site mE1_TFBS_cad
2R	7295323	2R_7295323_SNP [dm3] 2R_11407818_SNP [dm6]	G	A	2.959e^-4	0.978	SYNONYMOUS_CODING CG7759 DOWNSTREAM CG30026	TF binding site mE1_TFBS_bab1
X	12205170	X_12205170_SNP [dm3] X_12311137_SNP [dm6]	G	A	2.962e^-4	0.978	INTRON Ten-a
3L	3552107	3L_3552107_SNP [dm3] 3L_3552107_SNP [dm6]	G	A	2.973e^-4	0.978	INTRON Eip63E
2L	14254987	2L_14254987_SNP [dm3] 2L_14254987_SNP [dm6]	C	G	2.974e^-4	0.978	INTERGENIC
3L	7452296	3L_7452296_SNP [dm3] 3L_7459196_SNP [dm6]	C	G	2.974e^-4	0.978	DOWNSTREAM ppk26 INTERGENIC
3L	15895339	3L_15895339_SNP [dm3] 3L_15902239_SNP [dm6]	T	A	2.974e^-4	0.978	UTR_3_PRIME sff
2R	5698049	2R_5698049_SNP [dm3] 2R_9810544_SNP [dm6]	A	G	2.975e^-4	0.978	DOWNSTREAM CG1648 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	6378900	3L_6378900_SNP [dm3] 3L_6385800_SNP [dm6]	G	A	2.981e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	3599987	2L_3599987_SNP [dm3] 2L_3599987_SNP [dm6]	T	A	2.984e^-4	0.978	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6058427	2R_6058427_SNP [dm3] 2R_10170922_SNP [dm6]	C	T	2.991e^-4	0.978	INTRON KCNQ
3L	12788371	3L_12788371_SNP [dm3] 3L_12795271_SNP [dm6]	G	A	3.001e^-4	0.978	NON_SYNONYMOUS_CODING CG42709 INTRON Atg1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	5081446	3L_5081446_SNP [dm3] 3L_5081446_SNP [dm6]	G	A	3.001e^-4	0.978	INTERGENIC
2L	8913232	2L_8913232_SNP [dm3] 2L_8913232_SNP [dm6]	T	G	3.010e^-4	0.978	INTRON CG34398
2R	14269526	2R_14269526_SNP [dm3] 2R_18382021_SNP [dm6]	A	T	3.011e^-4	0.978	UPSTREAM CG43202 DOWNSTREAM IM23 INTERGENIC
2R	16581297	2R_16581297_SNP [dm3] 2R_20693792_SNP [dm6]	G	A	3.014e^-4	0.978	DOWNSTREAM CG13438 INTERGENIC
2L	8986592	2L_8986592_SNP [dm3] 2L_8986592_SNP [dm6]	G	A	3.031e^-4	0.978	SPLICE_SITE_REGION rost INTRON rost
2L	12333152	2L_12333152_SNP [dm3] 2L_12333152_SNP [dm6]	A	G	3.041e^-4	0.978	INTERGENIC
3L	5735142	3L_5735142_SNP [dm3] 3L_5742042_SNP [dm6]	C	T	3.043e^-4	0.978	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_chinmo
3L	5916478	3L_5916478_SNP [dm3] 3L_5923378_SNP [dm6]	C	T	3.043e^-4	0.978	SYNONYMOUS_CODING CG32407 UPSTREAM Vap-33B	TF binding site mE1_TFBS_cad
3L	5916972	3L_5916972_SNP [dm3] 3L_5923872_SNP [dm6]	A	T	3.043e^-4	0.978	UTR_5_PRIME Vap-33B DOWNSTREAM CG32407	TF binding site mE1_TFBS_cad
3L	8873277	3L_8873277_SNP [dm3] 3L_8880177_SNP [dm6]	C	A	3.043e^-4	0.978	INTRON dally
X	15531943	X_15531943_INS [dm3] X_15637910_INS [dm6]	C	CTATATGCTATAC...	3.056e^-4	0.978	DOWNSTREAM CR44423 INTERGENIC
2R	16581306	2R_16581306_SNP [dm3] 2R_20693801_SNP [dm6]	A	G	3.062e^-4	0.978	DOWNSTREAM CG13438 INTERGENIC
2L	7051311	2L_7051311_SNP [dm3] 2L_7051311_SNP [dm6]	T	A	3.071e^-4	0.978	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2R	3772111	2R_3772111_SNP [dm3] 2R_7884606_SNP [dm6]	T	G	3.073e^-4	0.978	INTRON Dgk
3R	15764938	3R_15764938_SNP [dm3] 3R_19939216_SNP [dm6]	C	T	3.081e^-4	0.978	INTRON Hs6st
2L	20039950	2L_20039950_INS [dm3] 2L_20039950_INS [dm6]	A	AA	3.092e^-4	0.978	INTRON sNPF
2L	20039958	2L_20039958_SNP [dm3] 2L_20039958_SNP [dm6]	A	G	3.092e^-4	0.978	INTRON sNPF
X	22184258	X_22184258_SNP [dm3] X_22782422_SNP [dm6]	C	T	3.098e^-4	0.978	INTRON CR44997
3L	15603263	3L_15603263_SNP [dm3] 3L_15610163_SNP [dm6]	C	G	3.098e^-4	0.978	NON_SYNONYMOUS_CODING CG7650 DOWNSTREAM CG13449	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA
2L	3658055	2L_3658055_SNP [dm3] 2L_3658055_SNP [dm6]	C	G	3.109e^-4	0.978	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	5506062	X_5506062_SNP [dm3] X_5612029_SNP [dm6]	G	A	3.109e^-4	0.978	SYNONYMOUS_CODING Vsx1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
X	5506063	X_5506063_SNP [dm3] X_5612030_SNP [dm6]	T	A	3.109e^-4	0.978	NON_SYNONYMOUS_CODING Vsx1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
X	17589023	X_17589023_SNP [dm3] X_17694990_SNP [dm6]	G	A	3.112e^-4	0.978	UPSTREAM chas INTRON chas	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24878851	3R_24878851_SNP [dm3] 3R_29053129_SNP [dm6]	A	T	3.122e^-4	0.978	SPLICE_SITE_REGION CG11842 DOWNSTREAM CG11841 INTRON CG11842	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2R	10754948	2R_10754948_SNP [dm3] 2R_14867443_SNP [dm6]	C	T	3.124e^-4	0.978	SYNONYMOUS_CODING Inr-a INTRON Inr-a	TF binding site mE1_TFBS_cad
2R	7935600	2R_7935600_SNP [dm3] 2R_12048095_SNP [dm6]	C	T	3.124e^-4	0.978	SYNONYMOUS_CODING Drep-1
3L	7234157	3L_7234157_SNP [dm3] 3L_7241057_SNP [dm6]	T	C	3.124e^-4	0.978	UPSTREAM Neos DOWNSTREAM BHD INTRON RpL18	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	26088765	3R_26088765_DEL [dm3] 3R_30263043_DEL [dm6]	TT	T	3.127e^-4	0.978	INTERGENIC
2R	18443008	2R_18443008_SNP [dm3] 2R_22555503_SNP [dm6]	C	T	3.130e^-4	0.978	SYNONYMOUS_CODING px	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17656399	2R_17656399_SNP [dm3] 2R_21768894_SNP [dm6]	G	C	3.132e^-4	0.978	NON_SYNONYMOUS_CODING CG30395 SPLICE_SITE_REGION CG30395
2R	19905653	2R_19905653_SNP [dm3] 2R_24018130_SNP [dm6]	C	T	3.135e^-4	0.978	UPSTREAM CG4324 INTRON CG3121	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2R	12418212	2R_12418212_SNP [dm3] 2R_16530707_SNP [dm6]	G	T	3.141e^-4	0.978	INTRON Sema-2a	TF binding site BDTNP1_TFBS_twi
2L	9936346	2L_9936346_SNP [dm3] 2L_9936346_SNP [dm6]	A	G	3.148e^-4	0.978	UTR_3_PRIME CG31712 UPSTREAM CR45007 INTRON CG31712
2R	14462361	2R_14462361_DEL [dm3] 2R_18574856_DEL [dm6]	CCGCAGTTGC	C	3.152e^-4	0.978	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13789150	3R_13789150_SNP [dm3] 3R_17963428_SNP [dm6]	G	T	3.158e^-4	0.978	INTRON cpo
2R	7321990	2R_7321990_SNP [dm3] 2R_11434485_SNP [dm6]	G	A	3.163e^-4	0.978	INTERGENIC
3R	13117533	3R_13117533_SNP [dm3] 3R_17291811_SNP [dm6]	T	A	3.165e^-4	0.978	INTERGENIC
3R	13117539	3R_13117539_SNP [dm3] 3R_17291817_SNP [dm6]	T	C	3.165e^-4	0.978	INTERGENIC
3L	1476607	3L_1476607_SNP [dm3] 3L_1476607_SNP [dm6]	G	T	3.166e^-4	0.978	SYNONYMOUS_CODING stet	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12421544	2R_12421544_SNP [dm3] 2R_16534039_SNP [dm6]	T	G	3.171e^-4	0.978	UPSTREAM loopin-1 DOWNSTREAM Sema-2a INTERGENIC
2R	7474312	2R_7474312_SNP [dm3] 2R_11586807_SNP [dm6]	T	C	3.176e^-4	0.978	SYNONYMOUS_CODING tou
3L	10815470	3L_10815470_SNP [dm3] 3L_10822370_SNP [dm6]	A	G	3.180e^-4	0.978	INTERGENIC
2L	6033919	2L_6033919_SNP [dm3] 2L_6033919_SNP [dm6]	T	G	3.188e^-4	0.978	DOWNSTREAM mtm INTRON CG9109	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26268765	3R_26268765_SNP [dm3] 3R_30443043_SNP [dm6]	G	A	3.207e^-4	0.978	INTRON CG15537
2L	19380654	2L_19380654_SNP [dm3] 2L_19380654_SNP [dm6]	A	T	3.209e^-4	0.978	UPSTREAM CG17350 INTERGENIC
2L	1386691	2L_1386691_SNP [dm3] 2L_1386691_SNP [dm6]	T	C	3.210e^-4	0.978	INTRON lea
3L	5916665	3L_5916665_SNP [dm3] 3L_5923565_SNP [dm6]	C	A	3.215e^-4	0.978	UTR_3_PRIME CG32407 UPSTREAM Vap-33B	TF binding site mE1_TFBS_cad
3L	5916672	3L_5916672_SNP [dm3] 3L_5923572_SNP [dm6]	C	T	3.215e^-4	0.978	UPSTREAM Vap-33B DOWNSTREAM CG32407 INTERGENIC	TF binding site mE1_TFBS_cad
3R	6511579	3R_6511579_SNP [dm3] 3R_10685857_SNP [dm6]	G	T	3.222e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	6636872	X_6636872_SNP [dm3] X_6742839_SNP [dm6]	C	A	3.231e^-4	0.978	UPSTREAM snoRNA:Psi28S-3436b & 1 other DOWNSTREAM snoRNA:Psi28S-1060 & 1 other INTRON RpL17
3L	9428714	3L_9428714_SNP [dm3] 3L_9435614_SNP [dm6]	A	G	3.264e^-4	0.978	UPSTREAM CG42526 INTRON MTF-1
3L	9428725	3L_9428725_SNP [dm3] 3L_9435625_SNP [dm6]	A	T	3.264e^-4	0.978	UPSTREAM CG42526 INTRON MTF-1
3R	25537625	3R_25537625_SNP [dm3] 3R_29711903_SNP [dm6]	T	A	3.288e^-4	0.978	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	4467006	X_4467006_SNP [dm3] X_4572973_SNP [dm6]	G	C	3.293e^-4	0.978	INTRON CR32773
3R	17185841	3R_17185841_SNP [dm3] 3R_21360119_SNP [dm6]	A	G	3.296e^-4	0.978	UPSTREAM pre-mod_mdg4_-Z & 7 others INTRON mod_mdg4_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	6451776	3L_6451776_SNP [dm3] 3L_6458676_SNP [dm6]	C	T	3.306e^-4	0.978	INTRON CG42747
2L	10096892	2L_10096892_SNP [dm3] 2L_10096892_SNP [dm6]	T	C	3.315e^-4	0.978	INTRON CG44153 & 1 other
2R	12418200	2R_12418200_DEL [dm3] 2R_16530695_DEL [dm6]	TACTCATAT	T	3.317e^-4	0.978	INTRON Sema-2a	TF binding site BDTNP1_TFBS_twi
2L	16507418	2L_16507418_SNP [dm3] 2L_16507418_SNP [dm6]	T	G	3.326e^-4	0.978	UTR_3_PRIME Tpr2 DOWNSTREAM CG5953 & 1 other
2R	15711751	2R_15711751_SNP [dm3] 2R_19824246_SNP [dm6]	T	C	3.329e^-4	0.978	INTERGENIC
2L	12144306	2L_12144306_SNP [dm3] 2L_12144306_SNP [dm6]	T	C	3.346e^-4	0.978	UPSTREAM CG31760 INTRON CG31760
3L	22136377	3L_22136377_DEL [dm3] 3L_22143277_DEL [dm6]	CACATGTACGTAC...	C	3.373e^-4	0.978	INTRON olf413	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	3823285	3R_3823285_SNP [dm3] 3R_7997563_SNP [dm6]	C	A	3.378e^-4	0.978	INTERGENIC
3R	3824488	3R_3824488_SNP [dm3] 3R_7998766_SNP [dm6]	C	T	3.378e^-4	0.978	INTERGENIC
2R	1667453	2R_1667453_SNP [dm3] 2R_5779948_SNP [dm6]	C	T	3.379e^-4	0.978	INTRON ZnT41F
3L	13879258	3L_13879258_SNP [dm3] 3L_13886158_SNP [dm6]	T	C	3.421e^-4	0.978	INTRON dysc
3R	669694	3R_669694_SNP [dm3] 3R_4843972_SNP [dm6]	C	A	3.427e^-4	0.978	INTERGENIC	TF binding site mE1_TFBS_cad
3L	3148786	3L_3148786_SNP [dm3] 3L_3148786_SNP [dm6]	A	G	3.432e^-4	0.978	UPSTREAM BtbVII & 1 other INTRON BtbVII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	2114056	3L_2114056_SNP [dm3] 3L_2114056_SNP [dm6]	G	A	3.446e^-4	0.978	INTRON sls
2R	12311521	2R_12311521_DEL [dm3] 2R_16424016_DEL [dm6]	TT	T	3.460e^-4	0.978	INTRON Sema-2b
2R	9739637	2R_9739637_SNP [dm3] 2R_13852132_SNP [dm6]	T	G	3.464e^-4	0.978	NON_SYNONYMOUS_CODING CG30485 DOWNSTREAM CG6543
3R	27842060	3R_27842060_SNP [dm3] 3R_32016338_SNP [dm6]	T	G	3.464e^-4	0.978	UPSTREAM heph EXON CR45557	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	17381198	3R_17381198_SNP [dm3] 3R_21555476_SNP [dm6]	A	G	3.465e^-4	0.978	INTRON slou
X	14212393	X_14212393_SNP [dm3] X_14318360_SNP [dm6]	T	A	3.470e^-4	0.978	INTERGENIC
3L	11907388	3L_11907388_SNP [dm3] 3L_11914288_SNP [dm6]	C	A	3.477e^-4	0.978	INTRON CG44837
2L	5090948	2L_5090948_SNP [dm3] 2L_5090948_SNP [dm6]	A	G	3.488e^-4	0.978	INTRON pgant5
3L	9639251	3L_9639251_INS [dm3] 3L_9646151_INS [dm6]	A	AA	3.491e^-4	0.978	INTRON fry & 1 other
2L	7442862	2L_7442862_SNP [dm3] 2L_7442862_SNP [dm6]	C	T	3.494e^-4	0.978	UPSTREAM CG5973 INTRON CG5973
3L	3633578	3L_3633578_SNP [dm3] 3L_3633578_SNP [dm6]	T	A	3.502e^-4	0.978	INTRON dar1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	10894565	X_10894565_SNP [dm3] X_11000532_SNP [dm6]	T	A	3.512e^-4	0.978	INTRON CG42339
2L	5964528	2L_5964528_SNP [dm3] 2L_5964528_SNP [dm6]	G	A	3.513e^-4	0.978	UPSTREAM psd DOWNSTREAM CG13992 INTRON psd	TF binding site mE1_TFBS_cad
2R	15324138	2R_15324138_SNP [dm3] 2R_19436633_SNP [dm6]	G	T	3.520e^-4	0.978	UTR_5_PRIME Fak UPSTREAM Spt5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	15363608	2R_15363608_SNP [dm3] 2R_19476103_SNP [dm6]	C	A	3.520e^-4	0.978	INTRON par-1
2R	16677761	2R_16677761_SNP [dm3] 2R_20790256_SNP [dm6]	A	T	3.520e^-4	0.978	UTR_3_PRIME CG43677 UPSTREAM CG43667
2R	8109900	2R_8109900_SNP [dm3] 2R_12222395_SNP [dm6]	G	A	3.520e^-4	0.978	INTERGENIC
3L	11238218	3L_11238218_SNP [dm3] 3L_11245118_SNP [dm6]	G	A	3.520e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	11800608	3L_11800608_SNP [dm3] 3L_11807508_SNP [dm6]	C	A	3.520e^-4	0.978	NON_SYNONYMOUS_CODING CG42255
3L	1476625	3L_1476625_SNP [dm3] 3L_1476625_SNP [dm6]	C	T	3.520e^-4	0.978	SYNONYMOUS_CODING stet UPSTREAM robl62A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1476655	3L_1476655_SNP [dm3] 3L_1476655_SNP [dm6]	G	A	3.520e^-4	0.978	SYNONYMOUS_CODING stet UPSTREAM robl62A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1476691	3L_1476691_SNP [dm3] 3L_1476691_SNP [dm6]	G	A	3.520e^-4	0.978	SYNONYMOUS_CODING stet UPSTREAM robl62A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1476937	3L_1476937_SNP [dm3] 3L_1476937_SNP [dm6]	G	C	3.520e^-4	0.978	SYNONYMOUS_CODING stet UPSTREAM robl62A	TF binding site mE1_TFBS_sens
3L	1476943	3L_1476943_SNP [dm3] 3L_1476943_SNP [dm6]	C	T	3.520e^-4	0.978	SYNONYMOUS_CODING stet UPSTREAM robl62A	TF binding site mE1_TFBS_sens
3L	15366893	3L_15366893_SNP [dm3] 3L_15373793_SNP [dm6]	A	T	3.520e^-4	0.978	INTERGENIC
3L	1823546	3L_1823546_SNP [dm3] 3L_1823546_SNP [dm6]	C	A	3.520e^-4	0.978	DOWNSTREAM GV1 & 1 other INTERGENIC
3L	21797534	3L_21797534_SNP [dm3] 3L_21804434_SNP [dm6]	A	G	3.520e^-4	0.978	INTERGENIC
3L	21802267	3L_21802267_SNP [dm3] 3L_21809167_SNP [dm6]	A	C	3.520e^-4	0.978	UTR_5_PRIME eg INTRON eg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21806553	3L_21806553_SNP [dm3] 3L_21813453_SNP [dm6]	A	G	3.520e^-4	0.978	UTR_5_PRIME CG43895 INTRON eg
3L	21811256	3L_21811256_SNP [dm3] 3L_21818156_SNP [dm6]	A	C	3.520e^-4	0.978	DOWNSTREAM eg INTERGENIC
3L	21813891	3L_21813891_SNP [dm3] 3L_21820791_SNP [dm6]	T	C	3.520e^-4	0.978	INTERGENIC
3L	21816459	3L_21816459_SNP [dm3] 3L_21823359_SNP [dm6]	A	T	3.520e^-4	0.978	UPSTREAM CG7407 DOWNSTREAM CycH INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21817650	3L_21817650_DEL [dm3] 3L_21824550_DEL [dm6]	ATGTTTAGCTGTGTTAAGAT...	A	3.520e^-4	0.978	UTR_3_PRIME CG7407 UPSTREAM CG7414 DOWNSTREAM CG7407 INTRAGENIC CG7407 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21822094	3L_21822094_DEL [dm3] 3L_21828994_DEL [dm6]	ATTGCGGCCATGTCCAAGGA...	A	3.520e^-4	0.978	UPSTREAM CG32448 DOWNSTREAM CR43309 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3L	21830312	3L_21830312_SNP [dm3] 3L_21837212_SNP [dm6]	T	C	3.520e^-4	0.978	UTR_3_PRIME P5CDh1 DOWNSTREAM Nopp140
3L	2707769	3L_2707769_SNP [dm3] 3L_2707769_SNP [dm6]	A	G	3.520e^-4	0.978	INTRON Fife
3L	2707771	3L_2707771_SNP [dm3] 3L_2707771_SNP [dm6]	T	C	3.520e^-4	0.978	INTRON Fife
3L	5399555	3L_5399555_SNP [dm3] 3L_5406455_SNP [dm6]	C	T	3.520e^-4	0.978	INTERGENIC
3L	562962	3L_562962_SNP [dm3] 3L_562962_SNP [dm6]	G	A	3.520e^-4	0.978	INTRON hipk
3L	562982	3L_562982_SNP [dm3] 3L_562982_SNP [dm6]	G	A	3.520e^-4	0.978	INTRON hipk
3R	17715612	3R_17715612_SNP [dm3] 3R_21889890_SNP [dm6]	G	A	3.520e^-4	0.978	INTRON CG6678 EXON CR43844	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3R	22354819	3R_22354819_SNP [dm3] 3R_26529097_SNP [dm6]	G	A	3.520e^-4	0.978	INTRON plum
3R	22355002	3R_22355002_DEL [dm3] 3R_26529280_DEL [dm6]	CGCAACA	C	3.520e^-4	0.978	INTRON plum
3R	22356938	3R_22356938_SNP [dm3] 3R_26531216_SNP [dm6]	A	C	3.520e^-4	0.978	INTRON plum	TF binding site mE1_TFBS_HSA
3R	23299923	3R_23299923_SNP [dm3] 3R_27474201_SNP [dm6]	G	T	3.520e^-4	0.978	INTERGENIC
X	22018553	X_22018553_SNP [dm3] X_22616717_SNP [dm6]	A	C	3.520e^-4	0.978	INTRON Cda4
X	4363238	X_4363238_SNP [dm3] X_4469205_SNP [dm6]	C	T	3.520e^-4	0.978	INTRON bi & 1 other
2L	17569915	2L_17569915_SNP [dm3] 2L_17569915_SNP [dm6]	A	C	3.525e^-4	0.978	INTERGENIC
3L	7411608	3L_7411608_SNP [dm3] 3L_7418508_SNP [dm6]	T	G	3.526e^-4	0.978	INTERGENIC
3R	19909981	3R_19909981_SNP [dm3] 3R_24084259_SNP [dm6]	A	G	3.533e^-4	0.978	INTRON 4EHP
X	10132221	X_10132221_SNP [dm3] X_10238188_SNP [dm6]	T	C	3.534e^-4	0.978	UTR_3_PRIME Hk DOWNSTREAM Hk
2L	18767644	2L_18767644_SNP [dm3] 2L_18767644_SNP [dm6]	C	A	3.534e^-4	0.978	INTRON ham
3L	13879396	3L_13879396_SNP [dm3] 3L_13886296_SNP [dm6]	T	G	3.545e^-4	0.978	INTRON dysc	TF binding site mE1_TFBS_cad
2L	5341377	2L_5341377_SNP [dm3] 2L_5341377_SNP [dm6]	G	A	3.547e^-4	0.978	INTRON CG12512
2L	7085754	2L_7085754_SNP [dm3] 2L_7085754_SNP [dm6]	A	T	3.548e^-4	0.978	INTERGENIC
2R	12435492	2R_12435492_SNP [dm3] 2R_16547987_SNP [dm6]	T	C	3.548e^-4	0.978	INTERGENIC
2R	12436872	2R_12436872_SNP [dm3] 2R_16549367_SNP [dm6]	G	C	3.548e^-4	0.978	INTERGENIC
2L	3967462	2L_3967462_SNP [dm3] 2L_3967462_SNP [dm6]	A	G	3.554e^-4	0.978	INTRON fred
2L	2286749	2L_2286749_SNP [dm3] 2L_2286749_SNP [dm6]	A	G	3.556e^-4	0.978	SYNONYMOUS_CODING CG31681 DOWNSTREAM CG4271 & 1 other
X	2670556	X_2670556_SNP [dm3] X_2776523_SNP [dm6]	C	T	3.561e^-4	0.978	INTRON kirre
3R	5558490	3R_5558490_SNP [dm3] 3R_9732768_SNP [dm6]	A	G	3.589e^-4	0.978	SYNONYMOUS_CODING alphaTub85E	TF binding site mE1_TFBS_cad
2R	6055475	2R_6055475_SNP [dm3] 2R_10167970_SNP [dm6]	A	G	3.598e^-4	0.978	INTRON KCNQ
2R	18861951	2R_18861951_SNP [dm3] 2R_22974428_SNP [dm6]	T	A	3.613e^-4	0.978	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	6511324	3R_6511324_SNP [dm3] 3R_10685602_SNP [dm6]	C	G	3.617e^-4	0.978	INTERGENIC
2L	20039972	2L_20039972_SNP [dm3] 2L_20039972_SNP [dm6]	T	C	3.630e^-4	0.978	INTRON sNPF
3R	9972879	3R_9972879_SNP [dm3] 3R_14147157_SNP [dm6]	C	T	3.637e^-4	0.978	INTERGENIC
3L	12312295	3L_12312295_SNP [dm3] 3L_12319195_SNP [dm6]	C	A	3.638e^-4	0.978	INTERGENIC
2R	1345696	2R_1345696_SNP [dm3] 2R_5458191_SNP [dm6]	A	C	3.644e^-4	0.978	INTERGENIC	transposable element FlyBase
2L	2240071	2L_2240071_SNP [dm3] 2L_2240071_SNP [dm6]	G	A	3.648e^-4	0.978	SYNONYMOUS_CODING Tengl1 UPSTREAM Tengl2
3L	10870102	3L_10870102_SNP [dm3] 3L_10877002_SNP [dm6]	G	T	3.660e^-4	0.978	SYNONYMOUS_CODING CG6418 DOWNSTREAM tna	TF binding site mE1_TFBS_sens
3L	10872405	3L_10872405_SNP [dm3] 3L_10879305_SNP [dm6]	T	C	3.660e^-4	0.978	SYNONYMOUS_CODING Blos4 UPSTREAM CG6418	TF binding site BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6429147	3L_6429147_SNP [dm3] 3L_6436047_SNP [dm6]	T	C	3.668e^-4	0.978	INTRON CG42747	TF binding site mE1_TFBS_cad
3R	10437843	3R_10437843_SNP [dm3] 3R_14612121_SNP [dm6]	A	C	3.673e^-4	0.978	INTRON CG14853
2L	1658873	2L_1658873_INS [dm3] 2L_1658873_INS [dm6]	C	CTATGTAT	3.673e^-4	0.978	INTRON chinmo	TF binding site mE1_TFBS_Trl
2L	5961391	2L_5961391_SNP [dm3] 2L_5961391_SNP [dm6]	G	A	3.685e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25520577	3R_25520577_SNP [dm3] 3R_29694855_SNP [dm6]	T	C	3.692e^-4	0.978	INTRON dmrt99B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd
2R	14462349	2R_14462349_SNP [dm3] 2R_18574844_SNP [dm6]	G	A	3.695e^-4	0.978	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9872345	2L_9872345_SNP [dm3] 2L_9872345_SNP [dm6]	T	A	3.721e^-4	0.978	INTRON nAChRalpha6
3R	17185130	3R_17185130_SNP [dm3] 3R_21359408_SNP [dm6]	C	T	3.739e^-4	0.978	UTR_5_PRIME pre-mod_mdg4_-L & 3 others UPSTREAM pre-mod_mdg4_-Z & 1 other INTRON mod_mdg4_ & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
3R	25167297	3R_25167297_SNP [dm3] 3R_29341575_SNP [dm6]	C	G	3.739e^-4	0.978	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	13878924	3L_13878924_SNP [dm3] 3L_13885824_SNP [dm6]	T	C	3.745e^-4	0.978	UTR_3_PRIME dysc INTRON dysc
2R	12418186	2R_12418186_SNP [dm3] 2R_16530681_SNP [dm6]	G	A	3.745e^-4	0.978	INTRON Sema-2a	TF binding site BDTNP1_TFBS_twi
X	8709413	X_8709413_SNP [dm3] X_8815380_SNP [dm6]	C	T	3.756e^-4	0.978	INTERGENIC
2L	7051183	2L_7051183_SNP [dm3] 2L_7051183_SNP [dm6]	A	C	3.765e^-4	0.978	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	7051187	2L_7051187_DEL [dm3] 2L_7051187_DEL [dm6]	ATTTGTGTAGAAGATTCTCA...	A	3.765e^-4	0.978	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	19399431	2R_19399431_SNP [dm3] 2R_23511908_SNP [dm6]	G	T	3.767e^-4	0.978	NON_SYNONYMOUS_CODING CG3906	TF binding site mE1_TFBS_cad
3R	17207004	3R_17207004_SNP [dm3] 3R_21381282_SNP [dm6]	T	C	3.778e^-4	0.978	INTRON tin	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	14911278	3L_14911278_SNP [dm3] 3L_14918178_SNP [dm6]	G	T	3.784e^-4	0.978	INTRON DCX-EMAP
3L	18035538	3L_18035538_SNP [dm3] 3L_18042438_SNP [dm6]	T	C	3.784e^-4	0.978	UPSTREAM CG42393 DOWNSTREAM CG32192 INTRON Eip75B
3R	24179565	3R_24179565_SNP [dm3] 3R_28353843_SNP [dm6]	T	C	3.787e^-4	0.978	DOWNSTREAM Or98b INTERGENIC
X	12126737	X_12126737_SNP [dm3] X_12232704_SNP [dm6]	A	T	3.793e^-4	0.978	INTRON Ten-a
3R	10716672	3R_10716672_SNP [dm3] 3R_14890950_SNP [dm6]	G	T	3.795e^-4	0.978	UPSTREAM CycC INTRON CG3731	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_sens
X	13983883	X_13983883_SNP [dm3] X_14089850_SNP [dm6]	A	C	3.796e^-4	0.978	INTERGENIC
3R	17666229	3R_17666229_SNP [dm3] 3R_21840507_SNP [dm6]	C	T	3.796e^-4	0.978	INTERGENIC
2R	14531614	2R_14531614_SNP [dm3] 2R_18644109_SNP [dm6]	G	C	3.810e^-4	0.978	INTRON SP2637
2R	14531650	2R_14531650_SNP [dm3] 2R_18644145_SNP [dm6]	T	A	3.810e^-4	0.978	INTRON SP2637
2R	18614705	2R_18614705_SNP [dm3] 2R_22727200_SNP [dm6]	G	A	3.816e^-4	0.978	INTRON jbug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	3767201	3L_3767201_SNP [dm3] 3L_3767201_SNP [dm6]	C	T	3.834e^-4	0.978	SYNONYMOUS_CODING CG32264	TF binding site mE1_TFBS_bab1
3R	14171819	3R_14171819_DEL [dm3] 3R_18346097_DEL [dm6]	ATAAAGGGG	A	3.843e^-4	0.978	INTRON CG15803
3R	14171834	3R_14171834_DEL [dm3] 3R_18346112_DEL [dm6]	GT	G	3.843e^-4	0.978	INTRON CG15803
3L	3131904	3L_3131904_SNP [dm3] 3L_3131904_SNP [dm6]	A	T	3.844e^-4	0.978	INTRON CG11537
2R	12754723	2R_12754723_SNP [dm3] 2R_16867218_SNP [dm6]	T	G	3.846e^-4	0.978	NON_SYNONYMOUS_CODING Psi UTR_5_PRIME Psi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_inv
2L	14312298	2L_14312298_SNP [dm3] 2L_14312298_SNP [dm6]	G	T	3.855e^-4	0.978	INTRON wb
3L	15366879	3L_15366879_SNP [dm3] 3L_15373779_SNP [dm6]	A	C	3.866e^-4	0.978	INTERGENIC
2L	4843289	2L_4843289_SNP [dm3] 2L_4843289_SNP [dm6]	T	C	3.874e^-4	0.978	NON_SYNONYMOUS_CODING mxt INTRON mxt
3L	8024312	3L_8024312_SNP [dm3] 3L_8031212_SNP [dm6]	G	A	3.884e^-4	0.978	INTRON nmo
X	2390681	X_2390681_SNP [dm3] X_2496648_SNP [dm6]	A	T	3.885e^-4	0.978	INTRON trol	TF binding site BDTNP1_TFBS_dl
3R	10220668	3R_10220668_SNP [dm3] 3R_14394946_SNP [dm6]	G	T	3.889e^-4	0.978	SYNONYMOUS_CODING cv-c	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22100509	3R_22100509_SNP [dm3] 3R_26274787_SNP [dm6]	A	G	3.891e^-4	0.978	SYNONYMOUS_CODING CG6154
2L	20136741	2L_20136741_SNP [dm3] 2L_20136741_SNP [dm6]	G	T	3.893e^-4	0.978	INTERGENIC
2R	12362142	2R_12362142_SNP [dm3] 2R_16474637_SNP [dm6]	T	A	3.894e^-4	0.978	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	2536509	3L_2536509_SNP [dm3] 3L_2536509_SNP [dm6]	G	T	3.901e^-4	0.978	INTRON Spn
3L	2536612	3L_2536612_SNP [dm3] 3L_2536612_SNP [dm6]	A	G	3.901e^-4	0.978	UPSTREAM Spn INTRON Spn
3L	2537056	3L_2537056_SNP [dm3] 3L_2537056_SNP [dm6]	C	G	3.901e^-4	0.978	UPSTREAM Spn INTRON Spn	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	2537057	3L_2537057_SNP [dm3] 3L_2537057_SNP [dm6]	C	T	3.901e^-4	0.978	UPSTREAM Spn INTRON Spn	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	2537927	3L_2537927_SNP [dm3] 3L_2537927_SNP [dm6]	A	G	3.901e^-4	0.978	INTRON Spn
X	4467089	X_4467089_SNP [dm3] X_4573056_SNP [dm6]	T	A	3.902e^-4	0.978	INTRON CR32773
3R	14176038	3R_14176038_SNP [dm3] 3R_18350316_SNP [dm6]	T	C	3.902e^-4	0.978	INTRON CG15803
X	22072953	X_22072953_SNP [dm3] X_22671117_SNP [dm6]	C	T	3.907e^-4	0.978	INTRON CR44997
3L	4289597	3L_4289597_SNP [dm3] 3L_4289597_SNP [dm6]	G	A	3.910e^-4	0.978	SYNONYMOUS_CODING Hexo1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10687104	2L_10687104_SNP [dm3] 2L_10687104_SNP [dm6]	G	A	3.911e^-4	0.978	UPSTREAM CG7296 INTERGENIC
2L	10746090	2L_10746090_SNP [dm3] 2L_10746090_SNP [dm6]	G	A	3.918e^-4	0.978	INTRON CG17124
2L	14073577	2L_14073577_SNP [dm3] 2L_14073577_SNP [dm6]	T	C	3.938e^-4	0.978	INTRON nAChRalpha5
2L	18744407	2L_18744407_SNP [dm3] 2L_18744407_SNP [dm6]	C	T	3.939e^-4	0.978	INTERGENIC
3R	24739961	3R_24739961_SNP [dm3] 3R_28914239_SNP [dm6]	G	A	3.954e^-4	0.978	INTRON Doa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9488740	2L_9488740_SNP [dm3] 2L_9488740_SNP [dm6]	C	T	3.954e^-4	0.978	INTERGENIC
2L	7264185	2L_7264185_SNP [dm3] 2L_7264185_SNP [dm6]	C	T	3.959e^-4	0.978	INTRON Wnt4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12365934	2L_12365934_SNP [dm3] 2L_12365934_SNP [dm6]	C	T	3.965e^-4	0.978	UPSTREAM bru-2 INTRON bru-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	11452395	2L_11452395_SNP [dm3] 2L_11452395_SNP [dm6]	C	A	3.978e^-4	0.978	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14894062	2L_14894062_SNP [dm3] 2L_14894062_SNP [dm6]	G	A	3.981e^-4	0.978	INTERGENIC
2L	5968517	2L_5968517_SNP [dm3] 2L_5968517_SNP [dm6]	T	A	3.983e^-4	0.978	UPSTREAM Ucp4C & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22904735	3R_22904735_SNP [dm3] 3R_27079013_SNP [dm6]	T	A	3.994e^-4	0.978	INTRON CG14257	TF binding site mE1_TFBS_chinmo
3L	5433438	3L_5433438_SNP [dm3] 3L_5440338_SNP [dm6]	C	T	3.995e^-4	0.978	UTR_3_PRIME CG34391 DOWNSTREAM CG34391
2R	12433283	2R_12433283_SNP [dm3] 2R_16545778_SNP [dm6]	A	G	4.001e^-4	0.978	INTERGENIC
3L	3150460	3L_3150460_SNP [dm3] 3L_3150460_SNP [dm6]	G	T	4.006e^-4	0.978	SYNONYMOUS_CODING BtbVII	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	14228275	2R_14228275_SNP [dm3] 2R_18340770_SNP [dm6]	C	A	4.013e^-4	0.978	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14228279	2R_14228279_SNP [dm3] 2R_18340774_SNP [dm6]	C	A	4.013e^-4	0.978	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15920713	2R_15920713_SNP [dm3] 2R_20033208_SNP [dm6]	T	G	4.014e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	5260050	2L_5260050_SNP [dm3] 2L_5260050_SNP [dm6]	G	A	4.015e^-4	0.978	DOWNSTREAM CR44744 INTRON tkv
2L	14386717	2L_14386717_SNP [dm3] 2L_14386717_SNP [dm6]	A	G	4.024e^-4	0.978	INTERGENIC
3L	13276810	3L_13276810_DEL [dm3] 3L_13283710_DEL [dm6]	CC	C	4.030e^-4	0.978	DOWNSTREAM CR43146 EXON CR43913
3R	10913431	3R_10913431_SNP [dm3] 3R_15087709_SNP [dm6]	G	A	4.060e^-4	0.978	INTRON CG6966
3R	24878901	3R_24878901_SNP [dm3] 3R_29053179_SNP [dm6]	C	T	4.074e^-4	0.978	DOWNSTREAM CG11841 INTRON CG11842	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	26091718	3R_26091718_SNP [dm3] 3R_30265996_SNP [dm6]	G	C	4.076e^-4	0.978	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	15326085	X_15326085_SNP [dm3] X_15432052_SNP [dm6]	T	A	4.084e^-4	0.978	INTRON Cngl
2L	11368944	2L_11368944_SNP [dm3] 2L_11368944_SNP [dm6]	G	A	4.089e^-4	0.978	NON_SYNONYMOUS_CODING salr	TF binding site mE1_TFBS_cad
3L	14220873	3L_14220873_SNP [dm3] 3L_14227773_SNP [dm6]	C	T	4.090e^-4	0.978	INTRON nuf	TF binding site BDTNP1_TFBS_sna
2R	5668260	2R_5668260_SNP [dm3] 2R_9780755_SNP [dm6]	T	A	4.094e^-4	0.978	INTRON CG1688
2L	18884223	2L_18884223_SNP [dm3] 2L_18884223_SNP [dm6]	T	G	4.095e^-4	0.978	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	12009132	2R_12009132_SNP [dm3] 2R_16121627_SNP [dm6]	T	G	4.098e^-4	0.978	NON_SYNONYMOUS_CODING Jhe
2R	18763254	2R_18763254_SNP [dm3] 2R_22875731_SNP [dm6]	T	A	4.103e^-4	0.978	UPSTREAM CR45469 INTRON PIP5K59B	TF binding site mE1_TFBS_HSA
3L	4383607	3L_4383607_SNP [dm3] 3L_4383607_SNP [dm6]	C	T	4.105e^-4	0.978	UPSTREAM slow INTERGENIC
3L	2126886	3L_2126886_SNP [dm3] 3L_2126886_SNP [dm6]	G	T	4.108e^-4	0.978	INTRON zormin
2R	16204520	2R_16204520_SNP [dm3] 2R_20317015_SNP [dm6]	A	T	4.110e^-4	0.978	UPSTREAM CG13871 & 1 other INTERGENIC
2R	13285679	2R_13285679_SNP [dm3] 2R_17398174_SNP [dm6]	C	T	4.120e^-4	0.978	INTRON Sip1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6424633	2L_6424633_SNP [dm3] 2L_6424633_SNP [dm6]	T	C	4.123e^-4	0.978	SYNONYMOUS_CODING Fic	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3L	21823838	3L_21823838_DEL [dm3] 3L_21830738_DEL [dm6]	ATGGAT	A	4.124e^-4	0.978	UPSTREAM CR43309 INTRON CG7148
3R	5598461	3R_5598461_SNP [dm3] 3R_9772739_SNP [dm6]	T	A	4.140e^-4	0.978	SYNONYMOUS_CODING Whamy	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25295970	3R_25295970_SNP [dm3] 3R_29470248_SNP [dm6]	C	T	4.166e^-4	0.978	INTRON Ptp99A
X	10894622	X_10894622_DEL [dm3] X_11000589_DEL [dm6]	TCTACA	T	4.169e^-4	0.978	INTRON CG42339
3R	16020500	3R_16020500_INS [dm3] 3R_20194778_INS [dm6]	A	GTTTAAAACAAAG...	4.185e^-4	0.978	INTERGENIC
3R	16020417	3R_16020417_SNP [dm3] 3R_20194695_SNP [dm6]	G	T	4.197e^-4	0.978	INTERGENIC
2R	14992724	2R_14992724_SNP [dm3] 2R_19105219_SNP [dm6]	A	C	4.219e^-4	0.978	INTRON 5-HT1A
3L	7411606	3L_7411606_SNP [dm3] 3L_7418506_SNP [dm6]	C	A	4.224e^-4	0.978	INTERGENIC
2L	6419691	2L_6419691_SNP [dm3] 2L_6419691_SNP [dm6]	C	T	4.225e^-4	0.978	SYNONYMOUS_CODING Tig	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	12700591	X_12700591_SNP [dm3] X_12806558_SNP [dm6]	G	A	4.229e^-4	0.978	INTRON Pde9	TF binding site BDTNP1_TFBS_twi
3R	23798631	3R_23798631_SNP [dm3] 3R_27972909_SNP [dm6]	T	A	4.232e^-4	0.978	INTRON betaTub97EF
2R	19535817	2R_19535817_SNP [dm3] 2R_23648294_SNP [dm6]	A	G	4.234e^-4	0.978	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8735695	X_8735695_SNP [dm3] X_8841662_SNP [dm6]	A	T	4.243e^-4	0.978	INTRON CG12075
3R	17187483	3R_17187483_SNP [dm3] 3R_21361761_SNP [dm6]	C	T	4.248e^-4	0.978	SYNONYMOUS_CODING pre-mod_mdg4_-Z UTR_3_PRIME pre-mod_mdg4_-T DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_
3R	17187501	3R_17187501_SNP [dm3] 3R_21361779_SNP [dm6]	T	A	4.248e^-4	0.978	SYNONYMOUS_CODING pre-mod_mdg4_-Z UTR_3_PRIME pre-mod_mdg4_-T DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_
3R	17187540	3R_17187540_SNP [dm3] 3R_21361818_SNP [dm6]	G	A	4.248e^-4	0.978	SYNONYMOUS_CODING pre-mod_mdg4_-Z UTR_3_PRIME pre-mod_mdg4_-T DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_
3R	17187559	3R_17187559_SNP [dm3] 3R_21361837_SNP [dm6]	C	T	4.248e^-4	0.978	UTR_3_PRIME pre-mod_mdg4_-T & 1 other DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_
2R	7474282	2R_7474282_SNP [dm3] 2R_11586777_SNP [dm6]	G	A	4.272e^-4	0.978	SYNONYMOUS_CODING tou	TF binding site mE1_TFBS_sens
3L	11237566	3L_11237566_SNP [dm3] 3L_11244466_SNP [dm6]	T	C	4.276e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
3L	12615476	3L_12615476_SNP [dm3] 3L_12622376_SNP [dm6]	C	T	4.277e^-4	0.978	DOWNSTREAM caup INTERGENIC
3L	11998345	3L_11998345_SNP [dm3] 3L_12005245_SNP [dm6]	A	T	4.280e^-4	0.978	INTRON CG6928
2R	19513531	2R_19513531_DEL [dm3] 2R_23626008_DEL [dm6]	TATGAGT	T	4.283e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16791864	3R_16791864_SNP [dm3] 3R_20966142_SNP [dm6]	T	A	4.288e^-4	0.978	INTRON Atpalpha	TF binding site mE1_TFBS_cad
2L	7051312	2L_7051312_SNP [dm3] 2L_7051312_SNP [dm6]	T	C	4.295e^-4	0.978	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
X	8632897	X_8632897_DEL [dm3] X_8738864_DEL [dm6]	TT	T	4.298e^-4	0.978	INTERGENIC
2R	5676211	2R_5676211_SNP [dm3] 2R_9788706_SNP [dm6]	T	G	4.299e^-4	0.978	INTRON CG1688 EXON CR44208
3R	26098390	3R_26098390_SNP [dm3] 3R_30272668_SNP [dm6]	C	T	4.306e^-4	0.978	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	1266401	3L_1266401_SNP [dm3] 3L_1266401_SNP [dm6]	C	T	4.314e^-4	0.978	INTRON CG9134
3L	13238497	3L_13238497_SNP [dm3] 3L_13245397_SNP [dm6]	G	T	4.316e^-4	0.978	INTRON caps	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13238502	3L_13238502_SNP [dm3] 3L_13245402_SNP [dm6]	G	A	4.316e^-4	0.978	INTRON caps	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13242747	3L_13242747_SNP [dm3] 3L_13249647_SNP [dm6]	G	C	4.316e^-4	0.978	UPSTREAM CG32119 DOWNSTREAM tRNA:D2:69F INTRON caps
3L	13242764	3L_13242764_SNP [dm3] 3L_13249664_SNP [dm6]	G	A	4.316e^-4	0.978	UPSTREAM CG32119 DOWNSTREAM tRNA:D2:69F INTRON caps
3L	5054723	3L_5054723_SNP [dm3] 3L_5054723_SNP [dm6]	C	A	4.327e^-4	0.978	INTRON Con
2L	8719298	2L_8719298_SNP [dm3] 2L_8719298_SNP [dm6]	A	G	4.334e^-4	0.978	INTRON raw
2R	15273034	2R_15273034_SNP [dm3] 2R_19385529_SNP [dm6]	C	A	4.336e^-4	0.978	UPSTREAM CG10081 DOWNSTREAM CG10073 INTERGENIC
X	16609203	X_16609203_SNP [dm3] X_16715170_SNP [dm6]	C	T	4.351e^-4	0.978	SYNONYMOUS_CODING CG34325 DOWNSTREAM CG13008
3L	12494182	3L_12494182_INS [dm3] 3L_12501082_INS [dm6]	C	CAAA	4.358e^-4	0.978	UPSTREAM CG10681 DOWNSTREAM CR43868 INTRON CG10638
X	9618672	X_9618672_SNP [dm3] X_9724639_SNP [dm6]	C	T	4.359e^-4	0.978	INTERGENIC
2L	16403701	2L_16403701_SNP [dm3] 2L_16403701_SNP [dm6]	C	A	4.361e^-4	0.978	INTRON CG5888
X	12206804	X_12206804_SNP [dm3] X_12312771_SNP [dm6]	C	T	4.362e^-4	0.978	INTRON Ten-a
3L	20691620	3L_20691620_SNP [dm3] 3L_20698520_SNP [dm6]	G	A	4.365e^-4	0.978	INTERGENIC	regulatory region FlyBase TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3R	24444663	3R_24444663_SNP [dm3] 3R_28618941_SNP [dm6]	G	A	4.367e^-4	0.978	INTRON CG10011
2L	20079722	2L_20079722_SNP [dm3] 2L_20079722_SNP [dm6]	G	A	4.370e^-4	0.978	INTRON neb & 1 other
2L	20079727	2L_20079727_SNP [dm3] 2L_20079727_SNP [dm6]	G	C	4.370e^-4	0.978	INTRON neb & 1 other
3L	4476391	3L_4476391_SNP [dm3] 3L_4476391_SNP [dm6]	A	G	4.374e^-4	0.978	INTERGENIC
2L	14055160	2L_14055160_SNP [dm3] 2L_14055160_SNP [dm6]	G	A	4.378e^-4	0.978	INTRON nAChRalpha5
3R	13086098	3R_13086098_SNP [dm3] 3R_17260376_SNP [dm6]	T	A	4.381e^-4	0.978	INTRON beat-IIb
3L	5987636	3L_5987636_SNP [dm3] 3L_5994536_SNP [dm6]	T	A	4.390e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9465947	2R_9465947_SNP [dm3] 2R_13578442_SNP [dm6]	T	A	4.398e^-4	0.978	DOWNSTREAM CR44365 EXON CR44366	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2L	3967747	2L_3967747_SNP [dm3] 2L_3967747_SNP [dm6]	A	G	4.400e^-4	0.978	INTRON fred	TF binding site mE1_TFBS_bab1
3R	14171930	3R_14171930_SNP [dm3] 3R_18346208_SNP [dm6]	A	G	4.409e^-4	0.978	INTRON CG15803
2L	15032190	2L_15032190_SNP [dm3] 2L_15032190_SNP [dm6]	A	T	4.436e^-4	0.978	SPLICE_SITE_REGION GABA-B-R1 UPSTREAM CG31832 INTRON GABA-B-R1
3L	12009084	3L_12009084_SNP [dm3] 3L_12015984_SNP [dm6]	A	C	4.456e^-4	0.978	INTRON rols	TF binding site BDTNP1_TFBS_da
X	3542044	X_3542044_SNP [dm3] X_3648011_SNP [dm6]	T	C	4.460e^-4	0.978	INTRON AstA-R1
2R	19905659	2R_19905659_SNP [dm3] 2R_24018136_SNP [dm6]	T	C	4.476e^-4	0.978	UPSTREAM CG4324 INTRON CG3121	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
X	4467609	X_4467609_SNP [dm3] X_4573576_SNP [dm6]	T	A	4.490e^-4	0.978	INTRON CR32773	TF binding site BDTNP1_TFBS_dl
3R	20615400	3R_20615400_SNP [dm3] 3R_24789678_SNP [dm6]	G	A	4.505e^-4	0.978	INTRON Ets96B & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9885414	2L_9885414_SNP [dm3] 2L_9885414_SNP [dm6]	C	A	4.513e^-4	0.978	INTRON nAChRalpha6
3L	3132267	3L_3132267_SNP [dm3] 3L_3132267_SNP [dm6]	T	A	4.514e^-4	0.978	INTRON CG11537
3L	10865831	3L_10865831_SNP [dm3] 3L_10872731_SNP [dm6]	T	C	4.516e^-4	0.978	SYNONYMOUS_CODING tna	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	1304759	3L_1304759_SNP [dm3] 3L_1304759_SNP [dm6]	T	G	4.516e^-4	0.978	DOWNSTREAM CG2277 & 1 other INTERGENIC
3L	1304792	3L_1304792_SNP [dm3] 3L_1304792_SNP [dm6]	C	T	4.516e^-4	0.978	DOWNSTREAM CG2277 & 1 other INTERGENIC
3L	15399911	3L_15399911_SNP [dm3] 3L_15406811_SNP [dm6]	G	T	4.529e^-4	0.978	INTERGENIC
2L	14301858	2L_14301858_SNP [dm3] 2L_14301858_SNP [dm6]	A	G	4.539e^-4	0.978	INTRON wb
3R	10139708	3R_10139708_SNP [dm3] 3R_14313986_SNP [dm6]	T	A	4.546e^-4	0.978	UPSTREAM Crz INTRON CG31321
3R	10139719	3R_10139719_SNP [dm3] 3R_14313997_SNP [dm6]	T	A	4.546e^-4	0.978	UPSTREAM Crz INTRON CG31321
3R	19399500	3R_19399500_SNP [dm3] 3R_23573778_SNP [dm6]	G	A	4.552e^-4	0.978	SYNONYMOUS_CODING beat-IV	TF binding site mE1_TFBS_chinmo
X	4467423	X_4467423_DEL [dm3] X_4573390_DEL [dm6]	GAACTG	G	4.561e^-4	0.978	INTRON CR32773
X	4242771	X_4242771_SNP [dm3] X_4348738_SNP [dm6]	A	G	4.562e^-4	0.978	INTRON norpA
X	4242812	X_4242812_SNP [dm3] X_4348779_SNP [dm6]	G	C	4.562e^-4	0.978	INTRON norpA
3R	21674444	3R_21674444_SNP [dm3] 3R_25848722_SNP [dm6]	C	T	4.564e^-4	0.978	DOWNSTREAM CR45657 INTERGENIC
X	12655460	X_12655460_SNP [dm3] X_12761427_SNP [dm6]	C	G	4.574e^-4	0.978	SYNONYMOUS_CODING CG12717 UPSTREAM ade5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6073779	2R_6073779_SNP [dm3] 2R_10186274_SNP [dm6]	C	G	4.580e^-4	0.978	INTRON KCNQ
2R	10711025	2R_10711025_SNP [dm3] 2R_14823520_SNP [dm6]	T	A	4.580e^-4	0.978	DOWNSTREAM CR45329 INTERGENIC
X	9181115	X_9181115_SNP [dm3] X_9287082_SNP [dm6]	A	C	4.582e^-4	0.978	INTRON lz
2R	7295530	2R_7295530_SNP [dm3] 2R_11408025_SNP [dm6]	T	A	4.582e^-4	0.978	UTR_3_PRIME CG7759 DOWNSTREAM CG30026	TF binding site mE1_TFBS_bab1
X	9119029	X_9119029_SNP [dm3] X_9224996_SNP [dm6]	G	A	4.594e^-4	0.978	UPSTREAM CG15370 INTERGENIC
3R	24879503	3R_24879503_SNP [dm3] 3R_29053781_SNP [dm6]	G	A	4.602e^-4	0.978	UTR_3_PRIME CG11842 UPSTREAM CG11843	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9119044	X_9119044_SNP [dm3] X_9225011_SNP [dm6]	G	C	4.616e^-4	0.978	UPSTREAM CG15370 INTERGENIC
X	2284773	X_2284773_SNP [dm3] X_2390740_SNP [dm6]	A	T	4.629e^-4	0.978	INTERGENIC
3R	26269479	3R_26269479_SNP [dm3] 3R_30443757_SNP [dm6]	T	A	4.639e^-4	0.978	UPSTREAM CG15537 DOWNSTREAM Osi23 INTERGENIC
3R	26269490	3R_26269490_SNP [dm3] 3R_30443768_SNP [dm6]	A	T	4.639e^-4	0.978	UPSTREAM CG15537 DOWNSTREAM Osi23 INTERGENIC
2R	10646950	2R_10646950_SNP [dm3] 2R_14759445_SNP [dm6]	A	C	4.642e^-4	0.978	DOWNSTREAM Spred INTRON CG12857	TF binding site mE1_TFBS_cad
2R	17237225	2R_17237225_SNP [dm3] 2R_21349720_SNP [dm6]	A	G	4.650e^-4	0.978	SYNONYMOUS_CODING CG17974
2L	6388037	2L_6388037_SNP [dm3] 2L_6388037_SNP [dm6]	G	A	4.655e^-4	0.978	INTRON CG42368
2L	2287452	2L_2287452_SNP [dm3] 2L_2287452_SNP [dm6]	G	A	4.659e^-4	0.978	NON_SYNONYMOUS_CODING CG42658 UPSTREAM CG31681
2L	1010488	2L_1010488_SNP [dm3] 2L_1010488_SNP [dm6]	A	T	4.661e^-4	0.978	UTR_3_PRIME IA-2 DOWNSTREAM IA-2
2L	1010526	2L_1010526_SNP [dm3] 2L_1010526_SNP [dm6]	C	T	4.661e^-4	0.978	UTR_3_PRIME IA-2 DOWNSTREAM IA-2
3R	23414183	3R_23414183_SNP [dm3] 3R_27588461_SNP [dm6]	T	C	4.669e^-4	0.978	SYNONYMOUS_CODING CG5639	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	15326079	X_15326079_SNP [dm3] X_15432046_SNP [dm6]	T	C	4.696e^-4	0.978	INTRON Cngl
2R	15708211	2R_15708211_SNP [dm3] 2R_19820706_SNP [dm6]	G	A	4.702e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_Kr
3R	23495246	3R_23495246_SNP [dm3] 3R_27669524_SNP [dm6]	T	C	4.703e^-4	0.978	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7903206	2L_7903206_SNP [dm3] 2L_7903206_SNP [dm6]	G	A	4.721e^-4	0.978	INTRON Snoo
2R	6582632	2R_6582632_SNP [dm3] 2R_10695127_SNP [dm6]	T	C	4.730e^-4	0.978	INTRON stan
2R	11665642	2R_11665642_SNP [dm3] 2R_15778137_SNP [dm6]	C	T	4.739e^-4	0.978	INTRON Zasp52
2R	17656394	2R_17656394_SNP [dm3] 2R_21768889_SNP [dm6]	C	A	4.740e^-4	0.978	SPLICE_SITE_REGION CG30395 INTRON CG30395
2L	12922610	2L_12922610_SNP [dm3] 2L_12922610_SNP [dm6]	A	G	4.744e^-4	0.978	INTRON ACXA
3L	2536995	3L_2536995_SNP [dm3] 3L_2536995_SNP [dm6]	A	G	4.747e^-4	0.978	UPSTREAM Spn INTRON Spn	TF binding site mE1_TFBS_Trl
X	14637010	X_14637010_SNP [dm3] X_14742977_SNP [dm6]	A	G	4.755e^-4	0.978	INTRON NetB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	10894558	X_10894558_SNP [dm3] X_11000525_SNP [dm6]	A	G	4.759e^-4	0.978	INTRON CG42339
X	10894586	X_10894586_SNP [dm3] X_11000553_SNP [dm6]	A	C	4.759e^-4	0.978	INTRON CG42339
X	10894594	X_10894594_SNP [dm3] X_11000561_SNP [dm6]	A	T	4.759e^-4	0.978	INTRON CG42339
X	10894606	X_10894606_SNP [dm3] X_11000573_SNP [dm6]	A	T	4.759e^-4	0.978	INTRON CG42339
X	10894612	X_10894612_SNP [dm3] X_11000579_SNP [dm6]	G	C	4.759e^-4	0.978	INTRON CG42339
3L	2536862	3L_2536862_SNP [dm3] 3L_2536862_SNP [dm6]	A	C	4.772e^-4	0.978	UPSTREAM Spn INTRON Spn	TF binding site mE1_TFBS_Trl
3L	1287561	3L_1287561_SNP [dm3] 3L_1287561_SNP [dm6]	T	A	4.781e^-4	0.978	INTRON CG32333
3L	1187906	3L_1187906_SNP [dm3] 3L_1187906_SNP [dm6]	G	A	4.788e^-4	0.978	INTERGENIC
3L	2114465	3L_2114465_SNP [dm3] 3L_2114465_SNP [dm6]	T	G	4.788e^-4	0.978	SPLICE_SITE_REGION sls UTR_5_PRIME sls
2L	5070866	2L_5070866_SNP [dm3] 2L_5070866_SNP [dm6]	A	T	4.788e^-4	0.978	UPSTREAM RpL37A DOWNSTREAM CR45305 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
3L	1557059	3L_1557059_SNP [dm3] 3L_1557059_SNP [dm6]	A	G	4.796e^-4	0.978	SYNONYMOUS_CODING CG12099	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	17667701	3R_17667701_INS [dm3] 3R_21841979_INS [dm6]	T	TT	4.804e^-4	0.978	DOWNSTREAM Gr93b INTERGENIC	TF binding site BDTNP1_TFBS_sna
3R	20248321	3R_20248321_SNP [dm3] 3R_24422599_SNP [dm6]	C	G	4.804e^-4	0.978	INTRON nAChRalpha1
3L	2963732	3L_2963732_SNP [dm3] 3L_2963732_SNP [dm6]	A	G	4.818e^-4	0.978	UTR_3_PRIME Or63a
X	15108683	X_15108683_SNP [dm3] X_15214650_SNP [dm6]	G	A	4.823e^-4	0.978	INTERGENIC
2R	3792903	2R_3792903_SNP [dm3] 2R_7905398_SNP [dm6]	A	C	4.829e^-4	0.978	INTRON CG30377	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13501315	2R_13501315_SNP [dm3] 2R_17613810_SNP [dm6]	A	G	4.834e^-4	0.978	INTRON CG10936
X	9118951	X_9118951_SNP [dm3] X_9224918_SNP [dm6]	C	G	4.835e^-4	0.978	UPSTREAM CG15370 INTERGENIC
X	9118969	X_9118969_SNP [dm3] X_9224936_SNP [dm6]	A	G	4.835e^-4	0.978	UPSTREAM CG15370 INTERGENIC
2L	13256187	2L_13256187_SNP [dm3] 2L_13256187_SNP [dm6]	C	G	4.837e^-4	0.978	SYNONYMOUS_CODING CG31728	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20934897	3R_20934897_SNP [dm3] 3R_25109175_SNP [dm6]	C	T	4.842e^-4	0.978	UPSTREAM CG34027 DOWNSTREAM CG13650 INTERGENIC
2R	18570111	2R_18570111_SNP [dm3] 2R_22682606_SNP [dm6]	A	G	4.844e^-4	0.978	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	20079696	2L_20079696_SNP [dm3] 2L_20079696_SNP [dm6]	T	G	4.854e^-4	0.978	INTRON neb & 1 other
2L	20079713	2L_20079713_SNP [dm3] 2L_20079713_SNP [dm6]	A	T	4.854e^-4	0.978	INTRON neb & 1 other
2L	20079715	2L_20079715_SNP [dm3] 2L_20079715_SNP [dm6]	T	A	4.854e^-4	0.978	INTRON neb & 1 other
2L	10078093	2L_10078093_SNP [dm3] 2L_10078093_SNP [dm6]	G	A	4.863e^-4	0.978	INTRON CG44153
3L	8499958	3L_8499958_SNP [dm3] 3L_8506858_SNP [dm6]	C	T	4.865e^-4	0.978	DOWNSTREAM ZC3H3 INTRON CG43163	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10050125	2L_10050125_SNP [dm3] 2L_10050125_SNP [dm6]	A	G	4.866e^-4	0.978	SYNONYMOUS_CODING CG33301	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25613599	3R_25613599_SNP [dm3] 3R_29787877_SNP [dm6]	T	C	4.867e^-4	0.978	INTRON kay
2R	11662737	2R_11662737_SNP [dm3] 2R_15775232_SNP [dm6]	C	T	4.868e^-4	0.978	SYNONYMOUS_CODING Zasp52 INTRON Zasp52	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8985500	2L_8985500_SNP [dm3] 2L_8985500_SNP [dm6]	C	T	4.872e^-4	0.978	UPSTREAM CG13101 DOWNSTREAM rost INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11147672	2L_11147672_SNP [dm3] 2L_11147672_SNP [dm6]	C	T	4.878e^-4	0.978	INTRON Gyc32E
X	9717922	X_9717922_SNP [dm3] X_9823889_SNP [dm6]	T	C	4.879e^-4	0.978	INTRON CG32698
X	9717926	X_9717926_SNP [dm3] X_9823893_SNP [dm6]	T	C	4.879e^-4	0.978	INTRON CG32698
2R	14414084	2R_14414084_DEL [dm3] 2R_18526579_DEL [dm6]	GCCACTGG	G	4.886e^-4	0.978	UPSTREAM CG10924 DOWNSTREAM CG43066 INTERGENIC
X	16868184	X_16868184_SNP [dm3] X_16974151_SNP [dm6]	T	C	4.901e^-4	0.978	SYNONYMOUS_CODING CG45002	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	10096530	2L_10096530_SNP [dm3] 2L_10096530_SNP [dm6]	C	T	4.903e^-4	0.978	INTRON CG44153 & 1 other
X	12213815	X_12213815_DEL [dm3] X_12319782_DEL [dm6]	GGG	T	4.906e^-4	0.978	INTRON Ten-a
X	16817544	X_16817544_SNP [dm3] X_16923511_SNP [dm6]	C	G	4.911e^-4	0.978	INTRON CG4928
3L	12069762	3L_12069762_SNP [dm3] 3L_12076662_SNP [dm6]	A	C	4.919e^-4	0.978	INTRON Sema-5c
2L	17529169	2L_17529169_DEL [dm3] 2L_17529169_DEL [dm6]	CGGTCAATC	C	4.920e^-4	0.978	UPSTREAM CG15144 DOWNSTREAM CG15145 INTERGENIC
2L	5070878	2L_5070878_DEL [dm3] 2L_5070878_DEL [dm6]	AGGA	A	4.930e^-4	0.978	UPSTREAM RpL37A DOWNSTREAM CR45305 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
2L	5070901	2L_5070901_SNP [dm3] 2L_5070901_SNP [dm6]	A	T	4.930e^-4	0.978	UPSTREAM RpL37A DOWNSTREAM qtc EXON CR45305	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
2L	5070813	2L_5070813_SNP [dm3] 2L_5070813_SNP [dm6]	C	A	4.930e^-4	0.978	UPSTREAM RpL37A DOWNSTREAM CR45305 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
2L	5070816	2L_5070816_SNP [dm3] 2L_5070816_SNP [dm6]	C	T	4.930e^-4	0.978	UPSTREAM RpL37A DOWNSTREAM CR45305 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
2L	5070818	2L_5070818_SNP [dm3] 2L_5070818_SNP [dm6]	T	A	4.930e^-4	0.978	UPSTREAM RpL37A DOWNSTREAM CR45305 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
3R	20247843	3R_20247843_SNP [dm3] 3R_24422121_SNP [dm6]	A	C	4.968e^-4	0.978	INTRON nAChRalpha1
2L	1795609	2L_1795609_SNP [dm3] 2L_1795609_SNP [dm6]	A	C	4.970e^-4	0.978	UPSTREAM Gr22a INTERGENIC
3L	1304689	3L_1304689_SNP [dm3] 3L_1304689_SNP [dm6]	A	T	4.977e^-4	0.978	UTR_3_PRIME CG9149 DOWNSTREAM CG2277
3L	2760817	3L_2760817_SNP [dm3] 3L_2760817_SNP [dm6]	G	A	4.992e^-4	0.978	INTRON Mrtf
3L	2761165	3L_2761165_SNP [dm3] 3L_2761165_SNP [dm6]	C	A	4.992e^-4	0.978	INTRON Mrtf
3L	2761694	3L_2761694_SNP [dm3] 3L_2761694_SNP [dm6]	G	T	4.992e^-4	0.978	UTR_5_PRIME Mrtf INTRON Mrtf	TF binding site mE1_TFBS_cad
3L	1604735	3L_1604735_SNP [dm3] 3L_1604735_SNP [dm6]	C	A	5.008e^-4	0.978	UTR_5_PRIME CG33791 UTR_3_PRIME CG18170
3R	16982763	3R_16982763_SNP [dm3] 3R_21157041_SNP [dm6]	A	G	5.024e^-4	0.978	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3L	3534669	3L_3534669_DEL [dm3] 3L_3534669_DEL [dm6]	TCGT	T	5.025e^-4	0.978	INTRON Eip63E
3R	24816307	3R_24816307_SNP [dm3] 3R_28990585_SNP [dm6]	C	T	5.039e^-4	0.978	INTERGENIC
3R	20995832	3R_20995832_SNP [dm3] 3R_25170110_SNP [dm6]	T	C	5.043e^-4	0.978	SYNONYMOUS_CODING lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	20995835	3R_20995835_SNP [dm3] 3R_25170113_SNP [dm6]	T	C	5.043e^-4	0.978	SYNONYMOUS_CODING lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	19909995	3R_19909995_SNP [dm3] 3R_24084273_SNP [dm6]	G	A	5.047e^-4	0.978	INTRON 4EHP
X	9806668	X_9806668_SNP [dm3] X_9912635_SNP [dm6]	A	T	5.058e^-4	0.978	INTERGENIC
2R	16892808	2R_16892808_SNP [dm3] 2R_21005303_SNP [dm6]	C	T	5.059e^-4	0.978	SYNONYMOUS_CODING CG10543	TF binding site mE1_TFBS_cad
X	9119022	X_9119022_SNP [dm3] X_9224989_SNP [dm6]	G	A	5.059e^-4	0.978	UPSTREAM CG15370 INTERGENIC
2R	6358498	2R_6358498_SNP [dm3] 2R_10470993_SNP [dm6]	C	A	5.071e^-4	0.978	INTRON whd
2L	5463019	2L_5463019_SNP [dm3] 2L_5463019_SNP [dm6]	G	A	5.078e^-4	0.978	INTRON mid
2L	9865357	2L_9865357_SNP [dm3] 2L_9865357_SNP [dm6]	A	C	5.079e^-4	0.978	INTRON nAChRalpha6
3L	7010980	3L_7010980_SNP [dm3] 3L_7017880_SNP [dm6]	T	A	5.097e^-4	0.978	INTRON Mp
X	9614481	X_9614481_INS [dm3] X_9720448_INS [dm6]	G	GGG	5.101e^-4	0.978	INTERGENIC
3R	6973352	3R_6973352_SNP [dm3] 3R_11147630_SNP [dm6]	A	T	5.104e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	20795868	3L_20795868_SNP [dm3] 3L_20802768_SNP [dm6]	G	T	5.106e^-4	0.978	NON_SYNONYMOUS_CODING Spc105R
3R	19073423	3R_19073423_SNP [dm3] 3R_23247701_SNP [dm6]	A	G	5.108e^-4	0.978	INTRON CG4467
X	2670557	X_2670557_SNP [dm3] X_2776524_SNP [dm6]	A	C	5.110e^-4	0.978	INTRON kirre
2R	1782326	2R_1782326_INS [dm3] 2R_5894821_INS [dm6]	T	TCT	5.112e^-4	0.978	INTRON CG43366
2L	10325507	2L_10325507_SNP [dm3] 2L_10325507_SNP [dm6]	G	A	5.126e^-4	0.978	SYNONYMOUS_CODING RnrL DOWNSTREAM CG4995
X	1539850	X_1539850_SNP [dm3] X_1645817_SNP [dm6]	C	T	5.130e^-4	0.978	DOWNSTREAM br INTRON Mur2B & 1 other	TF binding site BDTNP1_TFBS_dl
2L	7908288	2L_7908288_SNP [dm3] 2L_7908288_SNP [dm6]	A	C	5.145e^-4	0.978	INTRON Snoo
2L	14894082	2L_14894082_SNP [dm3] 2L_14894082_SNP [dm6]	G	A	5.152e^-4	0.978	INTERGENIC
3R	21675655	3R_21675655_SNP [dm3] 3R_25849933_SNP [dm6]	C	T	5.155e^-4	0.978	DOWNSTREAM CG14545 INTERGENIC
3L	20104494	3L_20104494_SNP [dm3] 3L_20111394_SNP [dm6]	A	G	5.165e^-4	0.978	NON_SYNONYMOUS_CODING Ir76b DOWNSTREAM CG14187	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	27077579	3R_27077579_SNP [dm3] 3R_31251857_SNP [dm6]	C	A	5.169e^-4	0.978	NON_SYNONYMOUS_CODING qless	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	4009771	2L_4009771_SNP [dm3] 2L_4009771_SNP [dm6]	G	T	5.196e^-4	0.978	DOWNSTREAM CG43774 INTERGENIC
2L	11648327	2L_11648327_SNP [dm3] 2L_11648327_SNP [dm6]	A	C	5.201e^-4	0.978	NON_SYNONYMOUS_CODING CG6614	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
X	12669027	X_12669027_SNP [dm3] X_12774994_SNP [dm6]	T	A	5.205e^-4	0.978	UTR_3_PRIME CG32647 DOWNSTREAM CG32647
2L	10230079	2L_10230079_SNP [dm3] 2L_10230079_SNP [dm6]	C	T	5.206e^-4	0.978	INTRON CG5694	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	12144716	2L_12144716_SNP [dm3] 2L_12144716_SNP [dm6]	C	T	5.215e^-4	0.978	UPSTREAM CG31760 INTRON CG31760
3L	7423430	3L_7423430_DEL [dm3] 3L_7430330_DEL [dm6]	TTGT	T	5.221e^-4	0.978	INTRON CG42458
3R	15992223	3R_15992223_SNP [dm3] 3R_20166501_SNP [dm6]	A	G	5.235e^-4	0.978	INTERGENIC
2L	13024147	2L_13024147_SNP [dm3] 2L_13024147_SNP [dm6]	T	C	5.237e^-4	0.978	NON_SYNONYMOUS_CODING CG9932	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	27151975	3R_27151975_SNP [dm3] 3R_31326253_SNP [dm6]	T	C	5.252e^-4	0.978	INTRON CG34347
3R	27151999	3R_27151999_SNP [dm3] 3R_31326277_SNP [dm6]	T	G	5.252e^-4	0.978	INTRON CG34347
3L	2749949	3L_2749949_DEL [dm3] 3L_2749949_DEL [dm6]	CTA	C	5.256e^-4	0.978	INTRON Mrtf
3L	4376549	3L_4376549_SNP [dm3] 3L_4376549_SNP [dm6]	A	G	5.265e^-4	0.978	DOWNSTREAM CR44360 INTRON DopEcR
3L	8974389	3L_8974389_DEL [dm3] 3L_8981289_DEL [dm6]	GCGATGAATAATCTT...	G	5.265e^-4	0.978	UPSTREAM CG13314 DOWNSTREAM Galk INTERGENIC
X	12700456	X_12700456_SNP [dm3] X_12806423_SNP [dm6]	G	A	5.266e^-4	0.978	INTRON Pde9	TF binding site BDTNP1_TFBS_twi
X	12700512	X_12700512_SNP [dm3] X_12806479_SNP [dm6]	C	T	5.266e^-4	0.978	INTRON Pde9	TF binding site BDTNP1_TFBS_twi
2L	10687147	2L_10687147_SNP [dm3] 2L_10687147_SNP [dm6]	T	A	5.266e^-4	0.978	UPSTREAM CG7296 INTERGENIC
X	12213509	X_12213509_SNP [dm3] X_12319476_SNP [dm6]	C	T	5.279e^-4	0.978	INTRON Ten-a	TF binding site mE1_TFBS_cad
3L	13204534	3L_13204534_SNP [dm3] 3L_13211434_SNP [dm6]	T	G	5.285e^-4	0.978	UPSTREAM tRNA:CR32128 & 1 other DOWNSTREAM tRNA:CR32129 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5080040	3L_5080040_SNP [dm3] 3L_5080040_SNP [dm6]	A	G	5.289e^-4	0.978	INTERGENIC
3L	5080046	3L_5080046_SNP [dm3] 3L_5080046_SNP [dm6]	G	A	5.289e^-4	0.978	INTERGENIC
3R	14175859	3R_14175859_SNP [dm3] 3R_18350137_SNP [dm6]	C	A	5.291e^-4	0.978	INTRON CG15803
2R	3135393	2R_3135393_SNP [dm3] 2R_7247888_SNP [dm6]	T	A	5.294e^-4	0.978	INTERGENIC	TF binding site mE1_TFBS_cad
3R	24823645	3R_24823645_SNP [dm3] 3R_28997923_SNP [dm6]	A	C	5.296e^-4	0.978	INTRON wat
3R	6861403	3R_6861403_SNP [dm3] 3R_11035681_SNP [dm6]	A	T	5.301e^-4	0.978	INTRON CG34114
3L	13065546	3L_13065546_SNP [dm3] 3L_13072446_SNP [dm6]	G	C	5.308e^-4	0.978	INTERGENIC
3L	13065606	3L_13065606_SNP [dm3] 3L_13072506_SNP [dm6]	C	G	5.308e^-4	0.978	INTERGENIC
3L	3864811	3L_3864811_SNP [dm3] 3L_3864811_SNP [dm6]	C	G	5.308e^-4	0.978	UPSTREAM CR45379 INTERGENIC
3R	6972377	3R_6972377_SNP [dm3] 3R_11146655_SNP [dm6]	A	G	5.308e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	6975168	3R_6975168_SNP [dm3] 3R_11149446_SNP [dm6]	G	A	5.308e^-4	0.978	INTERGENIC
2L	12983439	2L_12983439_SNP [dm3] 2L_12983439_SNP [dm6]	A	G	5.312e^-4	0.978	INTERGENIC
2R	4696226	2R_4696226_SNP [dm3] 2R_8808721_SNP [dm6]	G	A	5.321e^-4	0.978	INTRON sns	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2896311	2R_2896311_INS [dm3] 2R_7008806_INS [dm6]	T	GTTGGAAA	5.321e^-4	0.978	DOWNSTREAM Tsp42Ed & 1 other INTERGENIC
2L	10166340	2L_10166340_SNP [dm3] 2L_10166340_SNP [dm6]	G	T	5.336e^-4	0.978	INTRON CG44153
2R	13387455	2R_13387455_SNP [dm3] 2R_17499950_SNP [dm6]	A	T	5.339e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv
2R	13387461	2R_13387461_SNP [dm3] 2R_17499956_SNP [dm6]	C	A	5.339e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv
3R	24819100	3R_24819100_SNP [dm3] 3R_28993378_SNP [dm6]	G	A	5.340e^-4	0.978	INTRON wat	TF binding site mE1_TFBS_HSA
3R	6516995	3R_6516995_SNP [dm3] 3R_10691273_SNP [dm6]	G	T	5.344e^-4	0.978	DOWNSTREAM Skeletor INTRON Skeletor
3R	10853394	3R_10853394_SNP [dm3] 3R_15027672_SNP [dm6]	C	T	5.346e^-4	0.978	INTERGENIC
3L	22538640	3L_22538640_SNP [dm3] 3L_22545540_SNP [dm6]	C	T	5.351e^-4	0.978	INTERGENIC
X	10894609	X_10894609_SNP [dm3] X_11000576_SNP [dm6]	A	C	5.394e^-4	0.978	INTRON CG42339
X	9717878	X_9717878_SNP [dm3] X_9823845_SNP [dm6]	G	T	5.397e^-4	0.978	INTRON CG32698
2R	7474797	2R_7474797_SNP [dm3] 2R_11587292_SNP [dm6]	G	A	5.423e^-4	0.978	DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
3R	19207024	3R_19207024_SNP [dm3] 3R_23381302_SNP [dm6]	G	A	5.426e^-4	0.978	SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_chinmo
3R	19207127	3R_19207127_SNP [dm3] 3R_23381405_SNP [dm6]	A	T	5.426e^-4	0.978	INTRON CG4393	TF binding site mE1_TFBS_chinmo
2R	16893052	2R_16893052_SNP [dm3] 2R_21005547_SNP [dm6]	T	C	5.427e^-4	0.978	SYNONYMOUS_CODING CG10543	TF binding site mE1_TFBS_cad
3L	17998888	3L_17998888_SNP [dm3] 3L_18005788_SNP [dm6]	G	A	5.468e^-4	0.978	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	13439142	2R_13439142_SNP [dm3] 2R_17551637_SNP [dm6]	T	G	5.475e^-4	0.978	NON_SYNONYMOUS_CODING MESR4	TF binding site mE1_TFBS_cad
2R	17450009	2R_17450009_SNP [dm3] 2R_21562504_SNP [dm6]	T	C	5.477e^-4	0.978	INTRON CG10440
2R	12433412	2R_12433412_SNP [dm3] 2R_16545907_SNP [dm6]	T	A	5.493e^-4	0.978	INTERGENIC
3L	13204641	3L_13204641_SNP [dm3] 3L_13211541_SNP [dm6]	T	A	5.495e^-4	0.978	UPSTREAM tRNA:CR32128 & 1 other DOWNSTREAM tRNA:CR32129 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1190084	3L_1190084_SNP [dm3] 3L_1190084_SNP [dm6]	A	G	5.500e^-4	0.978	SYNONYMOUS_CODING CG13912 DOWNSTREAM Trh	TF binding site mE1_TFBS_cad
3R	23015179	3R_23015179_SNP [dm3] 3R_27189457_SNP [dm6]	A	G	5.514e^-4	0.978	INTRON Ser	regulatory region REDfly_CRMs
3L	8973487	3L_8973487_SNP [dm3] 3L_8980387_SNP [dm6]	T	G	5.528e^-4	0.978	UPSTREAM CG5644 INTERGENIC
3L	13083078	3L_13083078_SNP [dm3] 3L_13089978_SNP [dm6]	A	T	5.532e^-4	0.978	UPSTREAM CG11251 INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	13083099	3L_13083099_SNP [dm3] 3L_13089999_SNP [dm6]	T	A	5.532e^-4	0.978	UPSTREAM CG11251 INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	10451653	2L_10451653_SNP [dm3] 2L_10451653_SNP [dm6]	C	T	5.535e^-4	0.978	SYNONYMOUS_CODING ppk10
2L	5153746	2L_5153746_SNP [dm3] 2L_5153746_SNP [dm6]	T	A	5.538e^-4	0.978	INTRON Msp300
2R	3731714	2R_3731714_SNP [dm3] 2R_7844209_SNP [dm6]	T	C	5.545e^-4	0.978	INTRON Dgk
3R	10139656	3R_10139656_SNP [dm3] 3R_14313934_SNP [dm6]	C	G	5.546e^-4	0.978	SYNONYMOUS_CODING CG31321 UPSTREAM Crz
3L	21797696	3L_21797696_SNP [dm3] 3L_21804596_SNP [dm6]	A	G	5.551e^-4	0.978	INTERGENIC
X	5507164	X_5507164_SNP [dm3] X_5613131_SNP [dm6]	G	A	5.552e^-4	0.978	DOWNSTREAM Vsx1 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_hkb
X	5507167	X_5507167_SNP [dm3] X_5613134_SNP [dm6]	A	C	5.552e^-4	0.978	DOWNSTREAM Vsx1 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_hkb
3R	22754243	3R_22754243_SNP [dm3] 3R_26928521_SNP [dm6]	T	G	5.553e^-4	0.978	INTRON sda
3R	22195923	3R_22195923_SNP [dm3] 3R_26370201_SNP [dm6]	A	G	5.557e^-4	0.978	INTERGENIC
3R	9983236	3R_9983236_SNP [dm3] 3R_14157514_SNP [dm6]	G	T	5.558e^-4	0.978	UPSTREAM CG31533 DOWNSTREAM CG31327 INTERGENIC
3L	7136521	3L_7136521_SNP [dm3] 3L_7143421_SNP [dm6]	A	T	5.572e^-4	0.978	UTR_3_PRIME corn DOWNSTREAM melt
3L	3149304	3L_3149304_SNP [dm3] 3L_3149304_SNP [dm6]	A	G	5.575e^-4	0.978	UPSTREAM CG12082 INTRON BtbVII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	7901495	2L_7901495_SNP [dm3] 2L_7901495_SNP [dm6]	A	G	5.586e^-4	0.978	INTRON Snoo
X	2286409	X_2286409_SNP [dm3] X_2392376_SNP [dm6]	C	A	5.621e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8413202	2L_8413202_SNP [dm3] 2L_8413202_SNP [dm6]	T	A	5.632e^-4	0.978	UTR_3_PRIME CG13398
2L	8413203	2L_8413203_SNP [dm3] 2L_8413203_SNP [dm6]	A	G	5.632e^-4	0.978	UTR_3_PRIME CG13398
2L	8413215	2L_8413215_SNP [dm3] 2L_8413215_SNP [dm6]	C	T	5.632e^-4	0.978	UTR_3_PRIME CG13398
2R	12008938	2R_12008938_SNP [dm3] 2R_16121433_SNP [dm6]	G	A	5.634e^-4	0.978	SYNONYMOUS_CODING Jhe	TF binding site BDTNP1_TFBS_bcd
3L	968797	3L_968797_SNP [dm3] 3L_968797_SNP [dm6]	G	T	5.640e^-4	0.978	INTRON Glut1
3R	13554554	3R_13554554_SNP [dm3] 3R_17728832_SNP [dm6]	T	A	5.640e^-4	0.978	INTRON Lgr1
3R	25160601	3R_25160601_SNP [dm3] 3R_29334879_SNP [dm6]	T	G	5.647e^-4	0.978	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	14152533	3L_14152533_INS [dm3] 3L_14159433_INS [dm6]	T	TTCGT	5.650e^-4	0.978	INTERGENIC	regulatory region REDfly_CRMs
3L	14152568	3L_14152568_SNP [dm3] 3L_14159468_SNP [dm6]	G	T	5.650e^-4	0.978	INTERGENIC	regulatory region REDfly_CRMs
3R	5597411	3R_5597411_SNP [dm3] 3R_9771689_SNP [dm6]	C	T	5.672e^-4	0.978	UPSTREAM CG9471 DOWNSTREAM Whamy INTERGENIC
2L	5582080	2L_5582080_SNP [dm3] 2L_5582080_SNP [dm6]	C	T	5.673e^-4	0.978	UPSTREAM CG14011 INTERGENIC
2L	2396104	2L_2396104_SNP [dm3] 2L_2396104_SNP [dm6]	C	A	5.695e^-4	0.978	INTRON VGlut
3L	21828602	3L_21828602_SNP [dm3] 3L_21835502_SNP [dm6]	C	A	5.718e^-4	0.978	SYNONYMOUS_CODING Nopp140 INTRON Nopp140	TF binding site mE1_TFBS_cad
2L	20065636	2L_20065636_SNP [dm3] 2L_20065636_SNP [dm6]	C	T	5.729e^-4	0.978	UTR_5_PRIME vls UPSTREAM bwa	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	7295487	2R_7295487_SNP [dm3] 2R_11407982_SNP [dm6]	G	A	5.730e^-4	0.978	UTR_3_PRIME CG7759 DOWNSTREAM CG30026	TF binding site mE1_TFBS_bab1
2L	5958304	2L_5958304_SNP [dm3] 2L_5958304_SNP [dm6]	G	A	5.735e^-4	0.978	SYNONYMOUS_CODING Vm26Ac DOWNSTREAM Vm26Ab	TF binding site mE1_TFBS_cad
2L	4351066	2L_4351066_SNP [dm3] 2L_4351066_SNP [dm6]	C	T	5.752e^-4	0.978	EXON CR44700	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	10528620	2L_10528620_SNP [dm3] 2L_10528620_SNP [dm6]	A	T	5.773e^-4	0.978	UPSTREAM Lip4 INTRON Lip4	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	10528627	2L_10528627_SNP [dm3] 2L_10528627_SNP [dm6]	G	C	5.773e^-4	0.978	UPSTREAM Lip4 INTRON Lip4	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	1318119	2L_1318119_SNP [dm3] 2L_1318119_SNP [dm6]	C	A	5.773e^-4	0.978	INTERGENIC
2L	1318144	2L_1318144_SNP [dm3] 2L_1318144_SNP [dm6]	T	C	5.773e^-4	0.978	INTERGENIC
X	10910372	X_10910372_SNP [dm3] X_11016339_SNP [dm6]	T	G	5.774e^-4	0.978	INTRON CG42339
3L	6570294	3L_6570294_SNP [dm3] 3L_6577194_SNP [dm6]	C	T	5.778e^-4	0.978	INTRON CG18769 & 1 other
3L	10864872	3L_10864872_SNP [dm3] 3L_10871772_SNP [dm6]	T	C	5.785e^-4	0.978	NON_SYNONYMOUS_CODING tna	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	21770308	3L_21770308_SNP [dm3] 3L_21777208_SNP [dm6]	G	A	5.789e^-4	0.978	DOWNSTREAM CG42689 INTRON CG42552	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14655776	2R_14655776_SNP [dm3] 2R_18768271_SNP [dm6]	T	C	5.789e^-4	0.978	SPLICE_SITE_REGION Mctp INTRON Mctp	TF binding site mE1_TFBS_chinmo
2L	6936543	2L_6936543_SNP [dm3] 2L_6936543_SNP [dm6]	C	A	5.794e^-4	0.978	SYNONYMOUS_CODING CG18304	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25321789	3R_25321789_SNP [dm3] 3R_29496067_SNP [dm6]	T	C	5.800e^-4	0.978	UPSTREAM CG2010 INTRON CG2010	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_HSA
3R	25321794	3R_25321794_SNP [dm3] 3R_29496072_SNP [dm6]	A	G	5.800e^-4	0.978	UPSTREAM CG2010 INTRON CG2010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_HSA
3R	25321804	3R_25321804_SNP [dm3] 3R_29496082_SNP [dm6]	T	A	5.800e^-4	0.978	UPSTREAM CG2010 INTRON CG2010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_HSA
2R	12423406	2R_12423406_SNP [dm3] 2R_16535901_SNP [dm6]	C	T	5.831e^-4	0.978	SYNONYMOUS_CODING loopin-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	20625531	3L_20625531_SNP [dm3] 3L_20632431_SNP [dm6]	T	C	5.832e^-4	0.978	UPSTREAM CR44681 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	1371260	2R_1371260_SNP [dm3] 2R_5483755_SNP [dm6]	A	C	5.847e^-4	0.978	INTRON CG30440
2L	6420738	2L_6420738_SNP [dm3] 2L_6420738_SNP [dm6]	C	T	5.868e^-4	0.978	SYNONYMOUS_CODING Tig	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11336075	2R_11336075_SNP [dm3] 2R_15448570_SNP [dm6]	G	A	5.871e^-4	0.978	INTRON CG43729
3R	14165885	3R_14165885_SNP [dm3] 3R_18340163_SNP [dm6]	G	A	5.886e^-4	0.978	INTRON CG15803
3L	20634432	3L_20634432_SNP [dm3] 3L_20641332_SNP [dm6]	C	T	5.890e^-4	0.978	DOWNSTREAM CG13251 INTERGENIC
3L	11221645	3L_11221645_SNP [dm3] 3L_11228545_SNP [dm6]	C	T	5.906e^-4	0.978	UTR_3_PRIME CG42671 INTRON CG42671
2R	19828668	2R_19828668_SNP [dm3] 2R_23941145_SNP [dm6]	C	T	5.911e^-4	0.978	SYNONYMOUS_CODING Tal	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	758441	2L_758441_SNP [dm3] 2L_758441_SNP [dm6]	T	C	5.920e^-4	0.978	DOWNSTREAM GABA-B-R3 INTRON GABA-B-R3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	11731036	2R_11731036_SNP [dm3] 2R_15843531_SNP [dm6]	C	T	5.920e^-4	0.978	UTR_3_PRIME CG8249 DOWNSTREAM CG8249 INTRON tun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	3090680	X_3090680_SNP [dm3] X_3196647_SNP [dm6]	T	A	5.927e^-4	0.978	INTRON dnc
2R	11665978	2R_11665978_SNP [dm3] 2R_15778473_SNP [dm6]	G	A	5.932e^-4	0.978	SYNONYMOUS_CODING Zasp52
2R	11665880	2R_11665880_SNP [dm3] 2R_15778375_SNP [dm6]	G	A	5.934e^-4	0.978	SYNONYMOUS_CODING Zasp52
3L	14238930	3L_14238930_SNP [dm3] 3L_14245830_SNP [dm6]	T	C	5.941e^-4	0.978	UPSTREAM CR44560 & 1 other INTERGENIC
X	14284960	X_14284960_SNP [dm3] X_14390927_SNP [dm6]	T	A	5.942e^-4	0.978	INTRON dpr8	TF binding site BDTNP1_TFBS_twi
2R	6424202	2R_6424202_SNP [dm3] 2R_10536697_SNP [dm6]	A	G	5.945e^-4	0.978	UPSTREAM snoRNA:lola-a DOWNSTREAM snoRNA:lola-b & 2 others INTRON lola	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	6424204	2R_6424204_SNP [dm3] 2R_10536699_SNP [dm6]	A	G	5.945e^-4	0.978	UPSTREAM snoRNA:lola-a DOWNSTREAM snoRNA:lola-b & 2 others INTRON lola	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	15036105	2L_15036105_SNP [dm3] 2L_15036105_SNP [dm6]	A	T	5.966e^-4	0.978	DOWNSTREAM CIAPIN1 INTRON yellow-c
3L	1605106	3L_1605106_SNP [dm3] 3L_1605106_SNP [dm6]	T	C	5.984e^-4	0.978	INTRON CG33791 & 1 other
3L	7233952	3L_7233952_SNP [dm3] 3L_7240852_SNP [dm6]	C	T	5.989e^-4	0.978	SPLICE_SITE_REGION RpL18 UPSTREAM Neos DOWNSTREAM BHD INTRON RpL18	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2747403	3L_2747403_DEL [dm3] 3L_2747403_DEL [dm6]	AA	G	5.990e^-4	0.978	INTRON Mrtf
3L	11237510	3L_11237510_SNP [dm3] 3L_11244410_SNP [dm6]	T	C	5.994e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
3L	6821350	3L_6821350_SNP [dm3] 3L_6828250_SNP [dm6]	G	A	6.001e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14220868	3L_14220868_SNP [dm3] 3L_14227768_SNP [dm6]	C	T	6.006e^-4	0.978	INTRON nuf	TF binding site BDTNP1_TFBS_sna
2R	9406247	2R_9406247_SNP [dm3] 2R_13518742_SNP [dm6]	G	A	6.010e^-4	0.978	SYNONYMOUS_CODING Vmat	TF binding site mE1_TFBS_cad
3R	19060857	3R_19060857_SNP [dm3] 3R_23235135_SNP [dm6]	T	C	6.015e^-4	0.978	INTRON CG4467
2R	16892796	2R_16892796_SNP [dm3] 2R_21005291_SNP [dm6]	G	A	6.020e^-4	0.978	SYNONYMOUS_CODING CG10543	TF binding site mE1_TFBS_cad
2L	3792308	2L_3792308_SNP [dm3] 2L_3792308_SNP [dm6]	C	T	6.038e^-4	0.978	INTRON CG3921
2L	4351070	2L_4351070_SNP [dm3] 2L_4351070_SNP [dm6]	C	T	6.048e^-4	0.978	EXON CR44700	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	5465650	3L_5465650_SNP [dm3] 3L_5472550_SNP [dm6]	C	G	6.060e^-4	0.978	INTERGENIC
3L	1946750	3L_1946750_SNP [dm3] 3L_1946750_SNP [dm6]	G	A	6.065e^-4	0.978	SYNONYMOUS_CODING mu2 UPSTREAM Cnb	TF binding site mE1_TFBS_sens
2L	5070853	2L_5070853_SNP [dm3] 2L_5070853_SNP [dm6]	A	T	6.068e^-4	0.978	UPSTREAM RpL37A DOWNSTREAM CR45305 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
3R	17913746	3R_17913746_DEL [dm3] 3R_22088024_DEL [dm6]	CACTGCGAGC	C	6.077e^-4	0.978	DOWNSTREAM CG5791 INTRON CG5778
2L	10085559	2L_10085559_SNP [dm3] 2L_10085559_SNP [dm6]	A	C	6.079e^-4	0.978	INTRON CG44153
3L	21106194	3L_21106194_SNP [dm3] 3L_21113094_SNP [dm6]	C	A	6.079e^-4	0.978	INTRON ko	regulatory region REDfly_CRMs
3L	9639254	3L_9639254_SNP [dm3] 3L_9646154_SNP [dm6]	T	A	6.083e^-4	0.978	INTRON fry & 1 other
3L	20607743	3L_20607743_SNP [dm3] 3L_20614643_SNP [dm6]	T	C	6.086e^-4	0.978	INTRON knrl
2R	11389957	2R_11389957_SNP [dm3] 2R_15502452_SNP [dm6]	C	T	6.101e^-4	0.978	SYNONYMOUS_CODING Ir52b
X	14333232	X_14333232_SNP [dm3] X_14439199_SNP [dm6]	T	C	6.101e^-4	0.978	INTRON dpr8
X	9584346	X_9584346_SNP [dm3] X_9690313_SNP [dm6]	C	T	6.106e^-4	0.978	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
X	2670559	X_2670559_SNP [dm3] X_2776526_SNP [dm6]	C	T	6.115e^-4	0.978	INTRON kirre
3L	3141194	3L_3141194_SNP [dm3] 3L_3141194_SNP [dm6]	A	G	6.115e^-4	0.978	INTRON CG11537	TF binding site mE1_TFBS_HSA
2L	2665940	2L_2665940_SNP [dm3] 2L_2665940_SNP [dm6]	T	C	6.142e^-4	0.978	SYNONYMOUS_CODING CG9879
2L	10845048	2L_10845048_SNP [dm3] 2L_10845048_SNP [dm6]	A	T	6.144e^-4	0.978	UPSTREAM CG17140 DOWNSTREAM Porin2 INTRON CG17139 & 1 other
2R	20099967	2R_20099967_SNP [dm3] 2R_24212444_SNP [dm6]	T	A	6.163e^-4	0.978	DOWNSTREAM CG30419 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA

Missing results

By genomic position
Variant impact
Gene name

CN_Hobo_TIDAL phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results