DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.151e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1276 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	8709413	X_8709413_SNP [dm3] X_8815380_SNP [dm6]	C	T	1.099e^-6	0.989	INTERGENIC
3L	2105320	3L_2105320_SNP [dm3] 3L_2105320_SNP [dm6]	T	C	5.250e^-6	0.989	SYNONYMOUS_CODING sls	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2L	5966209	2L_5966209_SNP [dm3] 2L_5966209_SNP [dm6]	T	G	6.891e^-6	0.989	SYNONYMOUS_CODING CG13992	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11473802	3L_11473802_SNP [dm3] 3L_11480702_SNP [dm6]	T	C	6.922e^-6	0.989	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	6953244	2L_6953244_SNP [dm3] 2L_6953244_SNP [dm6]	T	C	9.164e^-6	0.989	SYNONYMOUS_CODING SA	TF binding site mE1_TFBS_sens
2L	6953271	2L_6953271_SNP [dm3] 2L_6953271_SNP [dm6]	T	C	9.164e^-6	0.989	SYNONYMOUS_CODING SA	TF binding site mE1_TFBS_sens
3L	2105215	3L_2105215_SNP [dm3] 3L_2105215_SNP [dm6]	T	C	9.295e^-6	0.989	SYNONYMOUS_CODING sls	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	2105126	3L_2105126_SNP [dm3] 3L_2105126_SNP [dm6]	T	C	9.393e^-6	0.989	INTRON sls	TF binding site mE1_TFBS_chinmo
X	6448698	X_6448698_SNP [dm3] X_6554665_SNP [dm6]	C	T	9.452e^-6	0.989	SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_chinmo
X	6448651	X_6448651_SNP [dm3] X_6554618_SNP [dm6]	G	C	1.061e^-5	0.989	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_chinmo
2R	6949292	2R_6949292_DEL [dm3] 2R_11061787_DEL [dm6]	TA	G	1.128e^-5	0.989	INTRON luna
X	8708920	X_8708920_SNP [dm3] X_8814887_SNP [dm6]	A	T	1.144e^-5	0.989	INTERGENIC
2L	4196788	2L_4196788_SNP [dm3] 2L_4196788_SNP [dm6]	G	T	1.337e^-5	0.989	UTR_5_PRIME CG3714 INTRON CG3714	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
3L	11852655	3L_11852655_SNP [dm3] 3L_11859555_SNP [dm6]	A	G	1.355e^-5	0.989	INTRON CG44837
2L	5966175	2L_5966175_SNP [dm3] 2L_5966175_SNP [dm6]	C	G	1.473e^-5	0.989	NON_SYNONYMOUS_CODING CG13992	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8077363	3L_8077363_SNP [dm3] 3L_8084263_SNP [dm6]	C	G	1.579e^-5	0.989	INTRON Ect4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	1679433	3L_1679433_SNP [dm3] 3L_1679433_SNP [dm6]	T	G	1.648e^-5	0.989	INTRON CG7991
3L	16987512	3L_16987512_SNP [dm3] 3L_16994412_SNP [dm6]	T	G	1.778e^-5	0.989	DOWNSTREAM CG3764 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	16987692	3L_16987692_SNP [dm3] 3L_16994592_SNP [dm6]	G	A	1.778e^-5	0.989	DOWNSTREAM CG3764 & 1 other INTERGENIC
3R	13789150	3R_13789150_SNP [dm3] 3R_17963428_SNP [dm6]	G	T	1.823e^-5	0.989	INTRON cpo
2L	10096460	2L_10096460_SNP [dm3] 2L_10096460_SNP [dm6]	C	T	2.029e^-5	0.989	INTRON CG44153 & 1 other
2L	5966176	2L_5966176_SNP [dm3] 2L_5966176_SNP [dm6]	T	A	2.082e^-5	0.989	SYNONYMOUS_CODING CG13992	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2105098	3L_2105098_SNP [dm3] 3L_2105098_SNP [dm6]	G	C	2.112e^-5	0.989	INTRON sls	TF binding site mE1_TFBS_chinmo
3L	2105272	3L_2105272_SNP [dm3] 3L_2105272_SNP [dm6]	G	T	2.138e^-5	0.989	SYNONYMOUS_CODING sls	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2L	4196823	2L_4196823_SNP [dm3] 2L_4196823_SNP [dm6]	G	T	2.223e^-5	0.989	INTRON CG3714	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
X	11843367	X_11843367_SNP [dm3] X_11949334_SNP [dm6]	A	T	2.395e^-5	0.989	INTRON cac	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	1999806	2L_1999806_SNP [dm3] 2L_1999806_SNP [dm6]	G	T	2.418e^-5	0.989	UPSTREAM CR43464 INTRON CG33543
3R	25444559	3R_25444559_SNP [dm3] 3R_29618837_SNP [dm6]	G	T	2.434e^-5	0.989	UPSTREAM CG1907 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	3151597	3L_3151597_SNP [dm3] 3L_3151597_SNP [dm6]	C	T	2.529e^-5	0.989	INTRON BtbVII	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5182286	3L_5182286_SNP [dm3] 3L_5189186_SNP [dm6]	C	T	2.607e^-5	0.989	INTRON shep
3L	5182353	3L_5182353_SNP [dm3] 3L_5189253_SNP [dm6]	C	G	2.607e^-5	0.989	INTRON shep
2L	13729664	2L_13729664_SNP [dm3] 2L_13729664_SNP [dm6]	T	C	2.895e^-5	0.989	INTERGENIC
3R	25125892	3R_25125892_SNP [dm3] 3R_29300170_SNP [dm6]	A	T	2.988e^-5	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	11344665	2L_11344665_SNP [dm3] 2L_11344665_SNP [dm6]	C	G	3.051e^-5	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	15531943	X_15531943_INS [dm3] X_15637910_INS [dm6]	C	CTATATGCTATAC...	3.122e^-5	0.989	DOWNSTREAM CR44423 INTERGENIC
3L	2105204	3L_2105204_SNP [dm3] 3L_2105204_SNP [dm6]	T	C	3.319e^-5	0.989	NON_SYNONYMOUS_CODING sls	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	1557781	3L_1557781_SNP [dm3] 3L_1557781_SNP [dm6]	G	A	3.588e^-5	0.989	SPLICE_SITE_REGION CG12099 UPSTREAM Pex10 INTRON CG12099	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2105093	3L_2105093_SNP [dm3] 3L_2105093_SNP [dm6]	G	C	3.720e^-5	0.989	INTRON sls	TF binding site mE1_TFBS_chinmo
2L	4009682	2L_4009682_SNP [dm3] 2L_4009682_SNP [dm6]	G	A	3.842e^-5	0.989	DOWNSTREAM CG43774 INTERGENIC
3L	8830916	3L_8830916_SNP [dm3] 3L_8837816_SNP [dm6]	G	A	4.133e^-5	0.989	SYNONYMOUS_CODING CG32026 INTRON dally	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	4629433	2L_4629433_SNP [dm3] 2L_4629433_SNP [dm6]	C	T	4.334e^-5	0.989	INTERGENIC
X	4467817	X_4467817_SNP [dm3] X_4573784_SNP [dm6]	T	A	4.471e^-5	0.989	INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	13795325	3R_13795325_SNP [dm3] 3R_17969603_SNP [dm6]	C	G	4.586e^-5	0.989	INTRON cpo
X	8709324	X_8709324_SNP [dm3] X_8815291_SNP [dm6]	T	A	4.598e^-5	0.989	INTERGENIC
2R	8609411	2R_8609411_SNP [dm3] 2R_12721906_SNP [dm6]	A	G	4.708e^-5	0.989	INTRON CG42663
X	11843369	X_11843369_SNP [dm3] X_11949336_SNP [dm6]	A	G	4.730e^-5	0.989	INTRON cac	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	14992711	2R_14992711_SNP [dm3] 2R_19105206_SNP [dm6]	C	G	4.737e^-5	0.989	INTRON 5-HT1A
3L	19046709	3L_19046709_INS [dm3] 3L_19053609_INS [dm6]	A	AGAAAAC	4.847e^-5	0.989	UPSTREAM CG43407 DOWNSTREAM CR44675 INTERGENIC
3L	19046711	3L_19046711_DEL [dm3] 3L_19053611_DEL [dm6]	AG	A	4.847e^-5	0.989	UPSTREAM CG43407 DOWNSTREAM CR44675 INTERGENIC
3R	10172088	3R_10172088_SNP [dm3] 3R_14346366_SNP [dm6]	A	C	4.944e^-5	0.989	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8323688	X_8323688_SNP [dm3] X_8429655_SNP [dm6]	A	G	5.122e^-5	0.989	UTR_3_PRIME Trf2 INTRON Trf2
3R	22100006	3R_22100006_SNP [dm3] 3R_26274284_SNP [dm6]	G	C	5.175e^-5	0.989	INTRON CG6154
2R	8360544	2R_8360544_SNP [dm3] 2R_12473039_SNP [dm6]	T	C	5.197e^-5	0.989	SYNONYMOUS_CODING CG8550
3R	19277538	3R_19277538_SNP [dm3] 3R_23451816_SNP [dm6]	T	C	5.254e^-5	0.989	INTRON CG4374	TF binding site BDTNP1_TFBS_dl
2R	12381432	2R_12381432_DEL [dm3] 2R_16493927_DEL [dm6]	TCT	T	5.344e^-5	0.989	DOWNSTREAM S-Lap8 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	1557752	3L_1557752_SNP [dm3] 3L_1557752_SNP [dm6]	T	C	5.489e^-5	0.989	UPSTREAM Pex10 INTRON CG12099	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1557758	3L_1557758_SNP [dm3] 3L_1557758_SNP [dm6]	T	A	5.489e^-5	0.989	UPSTREAM Pex10 INTRON CG12099	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2105103	3L_2105103_SNP [dm3] 3L_2105103_SNP [dm6]	A	C	5.629e^-5	0.989	INTRON sls	TF binding site mE1_TFBS_chinmo
2R	2962650	2R_2962650_SNP [dm3] 2R_7075145_SNP [dm6]	G	A	5.752e^-5	0.989	UPSTREAM CG12831 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	10102232	2L_10102232_SNP [dm3] 2L_10102232_SNP [dm6]	G	C	5.854e^-5	0.989	INTRON CG44153 & 1 other
2L	6495166	2L_6495166_SNP [dm3] 2L_6495166_SNP [dm6]	A	T	5.980e^-5	0.989	UPSTREAM CG9547 INTRON CG31638	TF binding site mE1_TFBS_cad
3L	3303694	3L_3303694_SNP [dm3] 3L_3303694_SNP [dm6]	C	T	6.008e^-5	0.989	UPSTREAM ZnT63C & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2R	14512976	2R_14512976_SNP [dm3] 2R_18625471_SNP [dm6]	A	C	6.045e^-5	0.989	SYNONYMOUS_CODING Sec6 UPSTREAM Atg7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11852579	3L_11852579_DEL [dm3] 3L_11859479_DEL [dm6]	CGTAATCAGC	C	6.158e^-5	0.989	INTRON CG44837
X	4285620	X_4285620_SNP [dm3] X_4391587_SNP [dm6]	C	T	6.176e^-5	0.989	INTRON CR32773	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	5853949	3R_5853949_SNP [dm3] 3R_10028227_SNP [dm6]	G	A	6.321e^-5	0.989	INTRON Mical
2R	13042332	2R_13042332_DEL [dm3] 2R_17154827_DEL [dm6]	TT	T	6.332e^-5	0.989	INTRON CG17290
2L	5456110	2L_5456110_SNP [dm3] 2L_5456110_SNP [dm6]	T	A	6.350e^-5	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3127227	3L_3127227_SNP [dm3] 3L_3127227_SNP [dm6]	T	G	6.391e^-5	0.989	UPSTREAM prominin-like DOWNSTREAM CG11537 INTRON prominin-like	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8027606	2L_8027606_SNP [dm3] 2L_8027606_SNP [dm6]	C	T	6.438e^-5	0.989	SYNONYMOUS_CODING CG7367 DOWNSTREAM Tg
2L	11344575	2L_11344575_SNP [dm3] 2L_11344575_SNP [dm6]	A	G	6.486e^-5	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	1560016	3L_1560016_SNP [dm3] 3L_1560016_SNP [dm6]	C	T	6.604e^-5	0.989	UTR_3_PRIME CG7879 DOWNSTREAM Pex10	TF binding site mE1_TFBS_inv mE1_TFBS_sbb
3R	11302374	3R_11302374_SNP [dm3] 3R_15476652_SNP [dm6]	G	A	6.624e^-5	0.989	UPSTREAM AdamTS-A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	16373794	2L_16373794_SNP [dm3] 2L_16373794_SNP [dm6]	A	G	6.730e^-5	0.989	INTERGENIC
X	4467089	X_4467089_SNP [dm3] X_4573056_SNP [dm6]	T	A	6.735e^-5	0.989	INTRON CR32773
3L	1119065	3L_1119065_SNP [dm3] 3L_1119065_SNP [dm6]	G	A	6.799e^-5	0.989	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	2925476	2R_2925476_SNP [dm3] 2R_7037971_SNP [dm6]	C	T	6.843e^-5	0.989	UTR_5_PRIME CG33914 UPSTREAM CG33914
2R	14992596	2R_14992596_SNP [dm3] 2R_19105091_SNP [dm6]	C	T	6.933e^-5	0.989	INTRON 5-HT1A
X	4467772	X_4467772_SNP [dm3] X_4573739_SNP [dm6]	T	A	6.991e^-5	0.989	INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	9727916	2L_9727916_SNP [dm3] 2L_9727916_SNP [dm6]	T	A	6.998e^-5	0.989	INTRON Nckx30C
2L	9728018	2L_9728018_SNP [dm3] 2L_9728018_SNP [dm6]	C	T	6.998e^-5	0.989	INTRON Nckx30C
3L	3303590	3L_3303590_SNP [dm3] 3L_3303590_SNP [dm6]	C	T	7.044e^-5	0.989	UPSTREAM ZnT63C & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2R	13760427	2R_13760427_SNP [dm3] 2R_17872922_SNP [dm6]	A	T	7.062e^-5	0.989	UPSTREAM Mapmodulin INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	1020220	2L_1020220_SNP [dm3] 2L_1020220_SNP [dm6]	G	A	7.088e^-5	0.989	INTRON IA-2
3L	9716343	3L_9716343_SNP [dm3] 3L_9723243_SNP [dm6]	A	C	7.264e^-5	0.989	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2R	13042287	2R_13042287_SNP [dm3] 2R_17154782_SNP [dm6]	T	G	7.287e^-5	0.989	INTRON CG17290
2R	2925460	2R_2925460_SNP [dm3] 2R_7037955_SNP [dm6]	C	G	7.456e^-5	0.989	UTR_5_PRIME CG33914 UPSTREAM CG33914
2R	16455993	2R_16455993_SNP [dm3] 2R_20568488_SNP [dm6]	T	C	7.484e^-5	0.989	INTRON qsm	TF binding site mE1_TFBS_chinmo
2R	15273213	2R_15273213_SNP [dm3] 2R_19385708_SNP [dm6]	T	A	7.520e^-5	0.989	UPSTREAM CG10081 DOWNSTREAM CG10073 INTERGENIC
X	19611014	X_19611014_SNP [dm3] X_19716981_SNP [dm6]	C	T	7.619e^-5	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	8184942	3L_8184942_SNP [dm3] 3L_8191842_SNP [dm6]	A	G	7.917e^-5	0.989	SYNONYMOUS_CODING CG7387 DOWNSTREAM Atg18a INTRON MED24	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	11844237	3R_11844237_SNP [dm3] 3R_16018515_SNP [dm6]	T	G	8.122e^-5	0.989	SYNONYMOUS_CODING GATAe	TF binding site mE1_TFBS_inv
3L	1559937	3L_1559937_DEL [dm3] 3L_1559937_DEL [dm6]	GAA	G	8.134e^-5	0.989	UTR_3_PRIME CG7879 DOWNSTREAM Pex10	TF binding site mE1_TFBS_sbb
X	9444430	X_9444430_SNP [dm3] X_9550397_SNP [dm6]	A	G	8.172e^-5	0.989	DOWNSTREAM l_1_G0320 INTRON CG32700
3L	5183348	3L_5183348_SNP [dm3] 3L_5190248_SNP [dm6]	A	T	8.278e^-5	0.989	INTRON shep
2R	8625628	2R_8625628_SNP [dm3] 2R_12738123_SNP [dm6]	G	A	8.299e^-5	0.989	INTRON CG42663
2L	3388388	2L_3388388_SNP [dm3] 2L_3388388_SNP [dm6]	A	G	8.471e^-5	0.989	NON_SYNONYMOUS_CODING CG42460 UPSTREAM Sfp23F & 1 other
X	4467787	X_4467787_SNP [dm3] X_4573754_SNP [dm6]	T	C	8.672e^-5	0.989	INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	18570111	2R_18570111_SNP [dm3] 2R_22682606_SNP [dm6]	A	G	8.695e^-5	0.989	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10972634	3L_10972634_SNP [dm3] 3L_10979534_SNP [dm6]	A	C	8.776e^-5	0.989	INTERGENIC
3L	5184219	3L_5184219_SNP [dm3] 3L_5191119_SNP [dm6]	G	T	8.808e^-5	0.989	INTRON shep
3R	6298786	3R_6298786_SNP [dm3] 3R_10473064_SNP [dm6]	C	A	8.856e^-5	0.989	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	5046982	2L_5046982_SNP [dm3] 2L_5046982_SNP [dm6]	T	G	9.057e^-5	0.989	START_GAINED CG44001 UTR_5_PRIME CG44001 UTR_3_PRIME CG33995 & 1 other DOWNSTREAM CG9121	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	11242696	3R_11242696_SNP [dm3] 3R_15416974_SNP [dm6]	T	A	9.152e^-5	0.989	UTR_3_PRIME Atx2 DOWNSTREAM Atx2 & 3 others
2L	4009853	2L_4009853_SNP [dm3] 2L_4009853_SNP [dm6]	T	A	9.223e^-5	0.989	DOWNSTREAM CG43774 INTERGENIC
2R	11680877	2R_11680877_SNP [dm3] 2R_15793372_SNP [dm6]	G	A	9.280e^-5	0.989	UPSTREAM tun INTRON Zasp52	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3127886	3L_3127886_SNP [dm3] 3L_3127886_SNP [dm6]	C	T	9.294e^-5	0.989	UPSTREAM prominin-like DOWNSTREAM CG11537 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1560084	3L_1560084_SNP [dm3] 3L_1560084_SNP [dm6]	A	T	9.308e^-5	0.989	UTR_3_PRIME CG7879 DOWNSTREAM Pex10	TF binding site mE1_TFBS_inv mE1_TFBS_sbb
2L	19616746	2L_19616746_SNP [dm3] 2L_19616746_SNP [dm6]	C	T	9.374e^-5	0.989	INTRON Lar
3R	11214599	3R_11214599_SNP [dm3] 3R_15388877_SNP [dm6]	G	A	9.561e^-5	0.989	SYNONYMOUS_CODING Rbp UTR_3_PRIME Rbp	TF binding site mE1_TFBS_chinmo
X	4467774	X_4467774_SNP [dm3] X_4573741_SNP [dm6]	A	T	9.694e^-5	0.989	INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	4025098	2L_4025098_SNP [dm3] 2L_4025098_SNP [dm6]	A	C	9.855e^-5	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	21076009	X_21076009_SNP [dm3] X_21204982_SNP [dm6]	A	C	9.954e^-5	0.989	DOWNSTREAM CG32521 INTERGENIC
2L	11344643	2L_11344643_SNP [dm3] 2L_11344643_SNP [dm6]	A	T	9.990e^-5	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	3127216	3L_3127216_SNP [dm3] 3L_3127216_SNP [dm6]	T	A	1.027e^-4	0.989	UTR_5_PRIME prominin-like DOWNSTREAM CG11537 INTRON prominin-like	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14307264	2L_14307264_SNP [dm3] 2L_14307264_SNP [dm6]	G	A	1.031e^-4	0.989	INTRON wb
X	5409261	X_5409261_SNP [dm3] X_5515228_SNP [dm6]	T	G	1.039e^-4	0.989	INTERGENIC
X	15393174	X_15393174_SNP [dm3] X_15499141_SNP [dm6]	G	A	1.050e^-4	0.989	UTR_5_PRIME Gmap INTRON Gmap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14307189	2L_14307189_SNP [dm3] 2L_14307189_SNP [dm6]	A	G	1.059e^-4	0.989	INTRON wb
3L	5184005	3L_5184005_SNP [dm3] 3L_5190905_SNP [dm6]	C	G	1.115e^-4	0.989	INTRON shep
3R	6518848	3R_6518848_SNP [dm3] 3R_10693126_SNP [dm6]	A	G	1.115e^-4	0.989	SPLICE_SITE_REGION Skeletor INTRON Skeletor
3L	17998888	3L_17998888_SNP [dm3] 3L_18005788_SNP [dm6]	G	A	1.118e^-4	0.989	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	1242374	2L_1242374_SNP [dm3] 2L_1242374_SNP [dm6]	C	A	1.120e^-4	0.989	UTR_3_PRIME CG5397 DOWNSTREAM CG5397	TF binding site mE1_TFBS_chinmo
2L	4312418	2L_4312418_DEL [dm3] 2L_4312418_DEL [dm6]	TT	T	1.128e^-4	0.989	INTRON tutl
3R	13962362	3R_13962362_SNP [dm3] 3R_18136640_SNP [dm6]	A	T	1.129e^-4	0.989	INTERGENIC
3R	26062838	3R_26062838_SNP [dm3] 3R_30237116_SNP [dm6]	T	A	1.147e^-4	0.989	UTR_3_PRIME CG43448	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26062839	3R_26062839_SNP [dm3] 3R_30237117_SNP [dm6]	G	C	1.147e^-4	0.989	UTR_3_PRIME CG43448	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8412941	2L_8412941_SNP [dm3] 2L_8412941_SNP [dm6]	C	T	1.148e^-4	0.989	UTR_3_PRIME CG13398
3R	14061552	3R_14061552_SNP [dm3] 3R_18235830_SNP [dm6]	C	T	1.150e^-4	0.989	UPSTREAM repo INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	22224844	3R_22224844_SNP [dm3] 3R_26399122_SNP [dm6]	G	T	1.163e^-4	0.989	INTERGENIC
2L	9494849	2L_9494849_SNP [dm3] 2L_9494849_SNP [dm6]	G	C	1.192e^-4	0.989	START_GAINED Gdi UTR_5_PRIME Gdi UPSTREAM CG33298 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	18452463	2R_18452463_SNP [dm3] 2R_22564958_SNP [dm6]	C	T	1.200e^-4	0.989	SYNONYMOUS_CODING dnr1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4198141	2L_4198141_SNP [dm3] 2L_4198141_SNP [dm6]	T	A	1.202e^-4	0.989	UPSTREAM CG3714 DOWNSTREAM ft INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	6946042	2R_6946042_SNP [dm3] 2R_11058537_SNP [dm6]	C	G	1.205e^-4	0.989	INTRON luna
2L	4025085	2L_4025085_SNP [dm3] 2L_4025085_SNP [dm6]	G	A	1.221e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	14512856	2R_14512856_SNP [dm3] 2R_18625351_SNP [dm6]	A	G	1.222e^-4	0.989	SYNONYMOUS_CODING Sec6 UPSTREAM Atg7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20277361	3R_20277361_SNP [dm3] 3R_24451639_SNP [dm6]	C	T	1.223e^-4	0.989	INTRON nAChRalpha1
2L	5966335	2L_5966335_SNP [dm3] 2L_5966335_SNP [dm6]	A	G	1.230e^-4	0.989	SYNONYMOUS_CODING CG13992	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	16565551	X_16565551_SNP [dm3] X_16671518_SNP [dm6]	G	C	1.239e^-4	0.989	INTRON CG13012	TF binding site mE1_TFBS_HSA
3R	13962339	3R_13962339_SNP [dm3] 3R_18136617_SNP [dm6]	G	A	1.241e^-4	0.989	INTERGENIC
3L	3303099	3L_3303099_SNP [dm3] 3L_3303099_SNP [dm6]	A	G	1.260e^-4	0.989	UTR_5_PRIME CG14968 UPSTREAM CG14968 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	5303669	3L_5303669_SNP [dm3] 3L_5310569_SNP [dm6]	C	T	1.269e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	5184289	3L_5184289_SNP [dm3] 3L_5191189_SNP [dm6]	T	C	1.286e^-4	0.989	INTRON shep
2L	8440838	2L_8440838_SNP [dm3] 2L_8440838_SNP [dm6]	T	C	1.288e^-4	0.989	SYNONYMOUS_CODING mus201
X	657908	X_657908_SNP [dm3] X_763875_SNP [dm6]	G	T	1.312e^-4	0.989	UPSTREAM snoRNA:Psi18S-531 & 1 other DOWNSTREAM snoRNA:Psi28S-2179 INTRON RpL22	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	14048386	3R_14048386_SNP [dm3] 3R_18222664_SNP [dm6]	G	A	1.316e^-4	0.989	SYNONYMOUS_CODING mTerf5	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	2937181	2R_2937181_SNP [dm3] 2R_7049676_SNP [dm6]	G	C	1.321e^-4	0.989	UPSTREAM lbm INTRON lbm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	3388471	2L_3388471_SNP [dm3] 2L_3388471_SNP [dm6]	A	C	1.353e^-4	0.989	START_GAINED CG42460 UTR_5_PRIME CG42460 UPSTREAM Sfp23F & 1 other
X	22072654	X_22072654_SNP [dm3] X_22670818_SNP [dm6]	C	T	1.356e^-4	0.989	INTRON CR44997
3R	9981955	3R_9981955_SNP [dm3] 3R_14156233_SNP [dm6]	C	G	1.357e^-4	0.989	SYNONYMOUS_CODING CG31533
3L	3148776	3L_3148776_SNP [dm3] 3L_3148776_SNP [dm6]	A	T	1.363e^-4	0.989	UPSTREAM BtbVII & 1 other INTRON BtbVII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	18797276	2R_18797276_SNP [dm3] 2R_22909753_SNP [dm6]	C	A	1.367e^-4	0.989	INTRON nahoda
3L	3150897	3L_3150897_SNP [dm3] 3L_3150897_SNP [dm6]	C	G	1.376e^-4	0.989	INTRON BtbVII	TF binding site mE1_TFBS_chinmo
3R	22100084	3R_22100084_SNP [dm3] 3R_26274362_SNP [dm6]	T	C	1.380e^-4	0.989	INTRON CG6154
2L	3388426	2L_3388426_INS [dm3] 2L_3388426_INS [dm6]	A	AGTA	1.384e^-4	0.989	UTR_5_PRIME CG42460 UPSTREAM Sfp23F & 1 other
X	15561187	X_15561187_DEL [dm3] X_15667154_DEL [dm6]	CACT	A	1.393e^-4	0.989	DOWNSTREAM CG15646 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	19277556	3R_19277556_SNP [dm3] 3R_23451834_SNP [dm6]	G	A	1.402e^-4	0.989	INTRON CG4374	TF binding site BDTNP1_TFBS_dl
X	4124400	X_4124400_SNP [dm3] X_4230367_SNP [dm6]	A	G	1.426e^-4	0.989	INTERGENIC
3R	24829734	3R_24829734_SNP [dm3] 3R_29004012_SNP [dm6]	A	G	1.437e^-4	0.989	INTRON wat
X	14950851	X_14950851_SNP [dm3] X_15056818_SNP [dm6]	G	A	1.447e^-4	0.989	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
2R	2962628	2R_2962628_SNP [dm3] 2R_7075123_SNP [dm6]	C	A	1.461e^-4	0.989	UPSTREAM CG12831 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	25629474	3R_25629474_SNP [dm3] 3R_29803752_SNP [dm6]	T	G	1.469e^-4	0.989	SYNONYMOUS_CODING CG7789 UPSTREAM CG7834 DOWNSTREAM ncd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	19488616	3R_19488616_SNP [dm3] 3R_23662894_SNP [dm6]	G	T	1.481e^-4	0.989	INTRON CG31145	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	6620121	X_6620121_SNP [dm3] X_6726088_SNP [dm6]	T	G	1.495e^-4	0.989	INTRON CG3168
2R	14992724	2R_14992724_SNP [dm3] 2R_19105219_SNP [dm6]	A	C	1.518e^-4	0.989	INTRON 5-HT1A
X	4467407	X_4467407_INS [dm3] X_4573374_INS [dm6]	G	GATGG	1.522e^-4	0.989	INTRON CR32773
X	19800846	X_19800846_DEL [dm3] X_19906813_DEL [dm6]	TA	T	1.537e^-4	0.989	UTR_3_PRIME Hers DOWNSTREAM Hers	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	27284880	3R_27284880_SNP [dm3] 3R_31459158_SNP [dm6]	G	A	1.539e^-4	0.989	SYNONYMOUS_CODING lox DOWNSTREAM CG11334	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12773852	2L_12773852_SNP [dm3] 2L_12773852_SNP [dm6]	A	C	1.545e^-4	0.989	INTERGENIC
2L	3947580	2L_3947580_SNP [dm3] 2L_3947580_SNP [dm6]	A	G	1.545e^-4	0.989	INTRON fred
3L	1556951	3L_1556951_SNP [dm3] 3L_1556951_SNP [dm6]	A	G	1.558e^-4	0.989	SYNONYMOUS_CODING CG12099	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	11327245	X_11327245_SNP [dm3] X_11433212_SNP [dm6]	C	A	1.564e^-4	0.989	UTR_3_PRIME Evi5
3L	3910709	3L_3910709_SNP [dm3] 3L_3910709_SNP [dm6]	G	T	1.572e^-4	0.989	UTR_3_PRIME Eip63F-1 UPSTREAM mge DOWNSTREAM Eip63F-1
2L	4198308	2L_4198308_SNP [dm3] 2L_4198308_SNP [dm6]	A	G	1.589e^-4	0.989	UPSTREAM CG3714 DOWNSTREAM ft INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	13760418	2R_13760418_SNP [dm3] 2R_17872913_SNP [dm6]	G	A	1.598e^-4	0.989	UPSTREAM Mapmodulin INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	5183621	3L_5183621_SNP [dm3] 3L_5190521_SNP [dm6]	T	C	1.601e^-4	0.989	INTRON shep
3R	21418708	3R_21418708_SNP [dm3] 3R_25592986_SNP [dm6]	G	A	1.618e^-4	0.989	UTR_3_PRIME ymp INTRON msi & 1 other
2L	13729623	2L_13729623_SNP [dm3] 2L_13729623_SNP [dm6]	G	C	1.622e^-4	0.989	INTERGENIC
3R	14607806	3R_14607806_SNP [dm3] 3R_18782084_SNP [dm6]	T	C	1.626e^-4	0.989	INTRON CG7720
2L	16529793	2L_16529793_SNP [dm3] 2L_16529793_SNP [dm6]	G	A	1.629e^-4	0.989	UPSTREAM snoRNA:Me28S-C1237 INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc
2L	4654517	2L_4654517_SNP [dm3] 2L_4654517_SNP [dm6]	T	C	1.634e^-4	0.989	INTERGENIC
2R	14437840	2R_14437840_SNP [dm3] 2R_18550335_SNP [dm6]	T	C	1.638e^-4	0.989	INTERGENIC
2L	3947485	2L_3947485_DEL [dm3] 2L_3947485_DEL [dm6]	CGGA	C	1.664e^-4	0.989	INTRON fred
2L	3947495	2L_3947495_SNP [dm3] 2L_3947495_SNP [dm6]	A	G	1.664e^-4	0.989	INTRON fred
2L	3947499	2L_3947499_SNP [dm3] 2L_3947499_SNP [dm6]	T	A	1.664e^-4	0.989	INTRON fred
2L	3947502	2L_3947502_DEL [dm3] 2L_3947502_DEL [dm6]	TAATTGAATTTAAGTTCCAA...	T	1.664e^-4	0.989	INTRON fred
2R	11662955	2R_11662955_SNP [dm3] 2R_15775450_SNP [dm6]	G	A	1.666e^-4	0.989	SYNONYMOUS_CODING Zasp52 INTRON Zasp52	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	11242567	3R_11242567_SNP [dm3] 3R_15416845_SNP [dm6]	T	A	1.668e^-4	0.989	UTR_3_PRIME Atx2 DOWNSTREAM Atx2 & 3 others
3R	11242572	3R_11242572_SNP [dm3] 3R_15416850_SNP [dm6]	G	A	1.668e^-4	0.989	UTR_3_PRIME Atx2 DOWNSTREAM Atx2 & 3 others
2L	11227106	2L_11227106_SNP [dm3] 2L_11227106_SNP [dm6]	A	T	1.674e^-4	0.989	INTRON ab
3L	13174265	3L_13174265_SNP [dm3] 3L_13181165_SNP [dm6]	A	G	1.690e^-4	0.989	INTERGENIC
X	15450923	X_15450923_SNP [dm3] X_15556890_SNP [dm6]	A	G	1.692e^-4	0.989	UPSTREAM CG42300 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	24454013	3R_24454013_SNP [dm3] 3R_28628291_SNP [dm6]	C	T	1.697e^-4	0.989	INTRON CG10011
3L	8849048	3L_8849048_SNP [dm3] 3L_8855948_SNP [dm6]	T	C	1.707e^-4	0.989	INTRON dally
2L	13732139	2L_13732139_SNP [dm3] 2L_13732139_SNP [dm6]	T	A	1.714e^-4	0.989	INTERGENIC
2L	13732143	2L_13732143_SNP [dm3] 2L_13732143_SNP [dm6]	G	C	1.714e^-4	0.989	INTERGENIC
2L	13732148	2L_13732148_SNP [dm3] 2L_13732148_SNP [dm6]	C	T	1.714e^-4	0.989	INTERGENIC
2L	13732150	2L_13732150_SNP [dm3] 2L_13732150_SNP [dm6]	C	T	1.714e^-4	0.989	INTERGENIC
2L	13732153	2L_13732153_SNP [dm3] 2L_13732153_SNP [dm6]	A	T	1.714e^-4	0.989	INTERGENIC
2L	13732157	2L_13732157_SNP [dm3] 2L_13732157_SNP [dm6]	A	T	1.714e^-4	0.989	INTERGENIC
2L	13732174	2L_13732174_SNP [dm3] 2L_13732174_SNP [dm6]	G	A	1.714e^-4	0.989	INTERGENIC
2L	13732180	2L_13732180_SNP [dm3] 2L_13732180_SNP [dm6]	C	G	1.714e^-4	0.989	INTERGENIC
2L	13732181	2L_13732181_SNP [dm3] 2L_13732181_SNP [dm6]	C	T	1.714e^-4	0.989	INTERGENIC
2L	13732185	2L_13732185_SNP [dm3] 2L_13732185_SNP [dm6]	T	A	1.714e^-4	0.989	INTERGENIC
3L	8024626	3L_8024626_SNP [dm3] 3L_8031526_SNP [dm6]	T	C	1.752e^-4	0.989	INTRON nmo
2L	11658027	2L_11658027_SNP [dm3] 2L_11658027_SNP [dm6]	G	A	1.754e^-4	0.989	DOWNSTREAM CG43167 INTERGENIC
3R	6512068	3R_6512068_SNP [dm3] 3R_10686346_SNP [dm6]	A	C	1.766e^-4	0.989	UPSTREAM Skeletor INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	1557952	3L_1557952_SNP [dm3] 3L_1557952_SNP [dm6]	G	A	1.779e^-4	0.989	UTR_5_PRIME CG12099 UPSTREAM Pex10	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6862445	2R_6862445_SNP [dm3] 2R_10974940_SNP [dm6]	T	C	1.799e^-4	0.989	INTERGENIC
2L	4009771	2L_4009771_SNP [dm3] 2L_4009771_SNP [dm6]	G	T	1.823e^-4	0.989	DOWNSTREAM CG43774 INTERGENIC
2L	9093670	2L_9093670_SNP [dm3] 2L_9093670_SNP [dm6]	C	T	1.837e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	13514010	2R_13514010_SNP [dm3] 2R_17626505_SNP [dm6]	A	T	1.850e^-4	0.989	INTRON CG10936
2L	4197284	2L_4197284_SNP [dm3] 2L_4197284_SNP [dm6]	T	C	1.864e^-4	0.989	UTR_5_PRIME CG3714 INTRON CG3714	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
3L	3633461	3L_3633461_SNP [dm3] 3L_3633461_SNP [dm6]	A	G	1.869e^-4	0.989	INTRON dar1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	22100052	3R_22100052_SNP [dm3] 3R_26274330_SNP [dm6]	C	T	1.872e^-4	0.989	INTRON CG6154
2L	3363723	2L_3363723_SNP [dm3] 2L_3363723_SNP [dm6]	G	A	1.875e^-4	0.989	SYNONYMOUS_CODING CG34394	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	15393250	X_15393250_SNP [dm3] X_15499217_SNP [dm6]	T	A	1.880e^-4	0.989	UTR_5_PRIME Gmap INTRON Gmap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16531082	2L_16531082_SNP [dm3] 2L_16531082_SNP [dm6]	A	G	1.882e^-4	0.989	INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA
3L	3052202	3L_3052202_SNP [dm3] 3L_3052202_SNP [dm6]	G	A	1.892e^-4	0.989	UPSTREAM CG1271 DOWNSTREAM CG32485 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20258698	X_20258698_SNP [dm3] X_20387671_SNP [dm6]	T	C	1.902e^-4	0.989	INTERGENIC
3L	13370452	3L_13370452_SNP [dm3] 3L_13377352_SNP [dm6]	C	T	1.928e^-4	0.989	UPSTREAM CG14111 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	13042309	2R_13042309_SNP [dm3] 2R_17154804_SNP [dm6]	T	A	1.930e^-4	0.989	INTRON CG17290
X	5409177	X_5409177_DEL [dm3] X_5515144_DEL [dm6]	GATGCATCTGAAACTG...	G	1.939e^-4	0.989	INTERGENIC
3L	20592183	3L_20592183_SNP [dm3] 3L_20599083_SNP [dm6]	G	T	1.941e^-4	0.989	NON_SYNONYMOUS_CODING knrl	TF binding site mE1_TFBS_chinmo
2R	8360484	2R_8360484_SNP [dm3] 2R_12472979_SNP [dm6]	A	G	1.954e^-4	0.989	SYNONYMOUS_CODING CG8550
2R	8360505	2R_8360505_SNP [dm3] 2R_12473000_SNP [dm6]	T	C	1.954e^-4	0.989	SYNONYMOUS_CODING CG8550
3L	18098496	3L_18098496_SNP [dm3] 3L_18105396_SNP [dm6]	C	T	1.985e^-4	0.989	INTRON CG13698	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21418808	3R_21418808_SNP [dm3] 3R_25593086_SNP [dm6]	C	G	1.990e^-4	0.989	INTRON msi & 1 other	TF binding site BDTNP1_TFBS_dl
3R	21418829	3R_21418829_SNP [dm3] 3R_25593107_SNP [dm6]	A	G	1.990e^-4	0.989	INTRON msi & 1 other	TF binding site BDTNP1_TFBS_dl
3R	21418833	3R_21418833_SNP [dm3] 3R_25593111_SNP [dm6]	T	G	1.990e^-4	0.989	INTRON msi & 1 other	TF binding site BDTNP1_TFBS_dl
X	16667656	X_16667656_SNP [dm3] X_16773623_SNP [dm6]	A	G	2.000e^-4	0.989	INTRON if	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	13962364	3R_13962364_SNP [dm3] 3R_18136642_SNP [dm6]	G	A	2.010e^-4	0.989	INTERGENIC
2L	3947479	2L_3947479_SNP [dm3] 2L_3947479_SNP [dm6]	A	G	2.014e^-4	0.989	INTRON fred
3L	3150980	3L_3150980_SNP [dm3] 3L_3150980_SNP [dm6]	G	A	2.024e^-4	0.989	SYNONYMOUS_CODING BtbVII	TF binding site mE1_TFBS_chinmo
2L	13114815	2L_13114815_SNP [dm3] 2L_13114815_SNP [dm6]	G	T	2.033e^-4	0.989	INTERGENIC
2L	9092935	2L_9092935_SNP [dm3] 2L_9092935_SNP [dm6]	A	G	2.041e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	11231086	2L_11231086_SNP [dm3] 2L_11231086_SNP [dm6]	T	C	2.059e^-4	0.989	INTRON ab
3R	17836273	3R_17836273_SNP [dm3] 3R_22010551_SNP [dm6]	A	T	2.100e^-4	0.989	UTR_3_PRIME Eip93F
2L	6832188	2L_6832188_SNP [dm3] 2L_6832188_SNP [dm6]	G	A	2.106e^-4	0.989	SYNONYMOUS_CODING sens-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17308604	2L_17308604_SNP [dm3] 2L_17308604_SNP [dm6]	T	A	2.124e^-4	0.989	INTERGENIC
3R	25801782	3R_25801782_SNP [dm3] 3R_29976060_SNP [dm6]	G	A	2.141e^-4	0.989	INTERGENIC
2L	3791243	2L_3791243_SNP [dm3] 2L_3791243_SNP [dm6]	G	C	2.145e^-4	0.989	INTRON CG3921
2R	15456668	2R_15456668_SNP [dm3] 2R_19569163_SNP [dm6]	T	C	2.154e^-4	0.989	INTRON sm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1604552	3L_1604552_SNP [dm3] 3L_1604552_SNP [dm6]	A	G	2.166e^-4	0.989	SYNONYMOUS_CODING CG18170 UTR_5_PRIME CG33791 UPSTREAM CG33791
3L	7155037	3L_7155037_SNP [dm3] 3L_7161937_SNP [dm6]	T	A	2.170e^-4	0.989	UTR_3_PRIME Dscam2 INTRON Dscam2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3303650	3L_3303650_SNP [dm3] 3L_3303650_SNP [dm6]	A	C	2.172e^-4	0.989	UPSTREAM ZnT63C & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2L	11242365	2L_11242365_SNP [dm3] 2L_11242365_SNP [dm6]	T	A	2.204e^-4	0.989	INTRON ab
3L	18133248	3L_18133248_DEL [dm3] 3L_18140148_DEL [dm6]	TTA	T	2.215e^-4	0.989	INTRON gk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	18133280	3L_18133280_SNP [dm3] 3L_18140180_SNP [dm6]	A	G	2.215e^-4	0.989	INTRON gk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	11351224	3R_11351224_SNP [dm3] 3R_15525502_SNP [dm6]	T	G	2.221e^-4	0.989	INTERGENIC
X	20752518	X_20752518_SNP [dm3] X_20881491_SNP [dm6]	G	T	2.238e^-4	0.989	DOWNSTREAM I-3 INTRON shakB
3L	16997387	3L_16997387_INS [dm3] 3L_17004287_INS [dm6]	G	GTTTTACAAATATAATTGTC...	2.240e^-4	0.989	INTRON CG3764	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	16997394	3L_16997394_SNP [dm3] 3L_17004294_SNP [dm6]	C	A	2.240e^-4	0.989	INTRON CG3764	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	16997407	3L_16997407_SNP [dm3] 3L_17004307_SNP [dm6]	G	A	2.240e^-4	0.989	INTRON CG3764	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	23483242	3R_23483242_SNP [dm3] 3R_27657520_SNP [dm6]	T	C	2.245e^-4	0.989	UTR_3_PRIME Mlc1 UPSTREAM tau DOWNSTREAM Mlc1
2R	1782326	2R_1782326_INS [dm3] 2R_5894821_INS [dm6]	T	TCT	2.257e^-4	0.989	INTRON CG43366
2R	14183289	2R_14183289_INS [dm3] 2R_18295784_INS [dm6]	T	TGGCG	2.281e^-4	0.989	UPSTREAM CG18537 DOWNSTREAM CG18536 INTRON sbb
3L	3148786	3L_3148786_SNP [dm3] 3L_3148786_SNP [dm6]	A	G	2.285e^-4	0.989	UPSTREAM BtbVII & 1 other INTRON BtbVII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	14760752	2L_14760752_SNP [dm3] 2L_14760752_SNP [dm6]	T	A	2.293e^-4	0.989	UPSTREAM CG4691 INTERGENIC
3R	25065695	3R_25065695_SNP [dm3] 3R_29239973_SNP [dm6]	G	A	2.301e^-4	0.989	SPLICE_SITE_REGION CG31427 UTR_5_PRIME CG31427 DOWNSTREAM CG31445
2L	6537212	2L_6537212_DEL [dm3] 2L_6537212_DEL [dm6]	CTCTCC	C	2.319e^-4	0.989	INTRON eya	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	6537237	2L_6537237_SNP [dm3] 2L_6537237_SNP [dm6]	T	A	2.319e^-4	0.989	INTRON eya	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	7425888	2R_7425888_SNP [dm3] 2R_11538383_SNP [dm6]	A	G	2.338e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
X	4467341	X_4467341_SNP [dm3] X_4573308_SNP [dm6]	A	G	2.348e^-4	0.989	INTRON CR32773
2L	3617729	2L_3617729_SNP [dm3] 2L_3617729_SNP [dm6]	A	G	2.349e^-4	0.989	DOWNSTREAM CR44310 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3R	15931986	3R_15931986_SNP [dm3] 3R_20106264_SNP [dm6]	G	C	2.382e^-4	0.989	DOWNSTREAM CG31206 INTERGENIC
2R	5583895	2R_5583895_SNP [dm3] 2R_9696390_SNP [dm6]	G	A	2.384e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_sens
3L	3149612	3L_3149612_SNP [dm3] 3L_3149612_SNP [dm6]	T	A	2.390e^-4	0.989	INTRON BtbVII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	6533329	2L_6533329_SNP [dm3] 2L_6533329_SNP [dm6]	A	T	2.406e^-4	0.989	INTRON eya
2R	5660297	2R_5660297_SNP [dm3] 2R_9772792_SNP [dm6]	T	C	2.407e^-4	0.989	INTRON CG1688	TF binding site mE1_TFBS_cad
X	12213727	X_12213727_SNP [dm3] X_12319694_SNP [dm6]	G	A	2.411e^-4	0.989	INTRON Ten-a
2L	9525718	2L_9525718_INS [dm3] 2L_9525718_INS [dm6]	G	GATG	2.425e^-4	0.989	INTRON Oatp30B	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	16565543	X_16565543_INS [dm3] X_16671510_INS [dm6]	A	ATA	2.425e^-4	0.989	INTRON CG13012	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	21828602	3L_21828602_SNP [dm3] 3L_21835502_SNP [dm6]	C	A	2.431e^-4	0.989	SYNONYMOUS_CODING Nopp140 INTRON Nopp140	TF binding site mE1_TFBS_cad
2R	16513825	2R_16513825_SNP [dm3] 2R_20626320_SNP [dm6]	A	G	2.435e^-4	0.989	SYNONYMOUS_CODING CG16742
X	6429387	X_6429387_SNP [dm3] X_6535354_SNP [dm6]	G	A	2.439e^-4	0.989	INTRON dx	TF binding site BDTNP1_TFBS_dl
X	6429417	X_6429417_SNP [dm3] X_6535384_SNP [dm6]	T	C	2.439e^-4	0.989	INTRON dx	TF binding site BDTNP1_TFBS_dl
2R	2986509	2R_2986509_SNP [dm3] 2R_7099004_SNP [dm6]	C	A	2.450e^-4	0.989	UTR_5_PRIME esn INTRON esn	TF binding site mE1_TFBS_sens
2L	10091948	2L_10091948_SNP [dm3] 2L_10091948_SNP [dm6]	A	G	2.502e^-4	0.989	SYNONYMOUS_CODING CG13133 INTRON CG44153	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6589433	2L_6589433_SNP [dm3] 2L_6589433_SNP [dm6]	G	C	2.506e^-4	0.989	INTRON CG11319
3R	22090890	3R_22090890_SNP [dm3] 3R_26265168_SNP [dm6]	C	G	2.511e^-4	0.989	INTRON CG6154
2R	12381321	2R_12381321_SNP [dm3] 2R_16493816_SNP [dm6]	C	T	2.522e^-4	0.989	DOWNSTREAM S-Lap8 INTERGENIC	TF binding site mE1_TFBS_HSA
X	6429334	X_6429334_SNP [dm3] X_6535301_SNP [dm6]	A	T	2.524e^-4	0.989	INTRON dx	TF binding site BDTNP1_TFBS_dl
3L	3303159	3L_3303159_SNP [dm3] 3L_3303159_SNP [dm6]	T	G	2.532e^-4	0.989	UPSTREAM CG14968 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	7101366	3L_7101366_SNP [dm3] 3L_7108266_SNP [dm6]	T	A	2.534e^-4	0.989	INTRON form3	TF binding site mE1_TFBS_inv
3L	1687960	3L_1687960_SNP [dm3] 3L_1687960_SNP [dm6]	C	T	2.539e^-4	0.989	UPSTREAM CG7991 INTRON CG7991
3R	9972879	3R_9972879_SNP [dm3] 3R_14147157_SNP [dm6]	C	T	2.573e^-4	0.989	INTERGENIC
2L	13729438	2L_13729438_SNP [dm3] 2L_13729438_SNP [dm6]	G	A	2.581e^-4	0.989	INTERGENIC
3R	5876770	3R_5876770_SNP [dm3] 3R_10051048_SNP [dm6]	G	T	2.583e^-4	0.989	SYNONYMOUS_CODING CG3925 DOWNSTREAM Fancl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	6589439	2L_6589439_SNP [dm3] 2L_6589439_SNP [dm6]	T	C	2.585e^-4	0.989	INTRON CG11319
3R	23483159	3R_23483159_SNP [dm3] 3R_27657437_SNP [dm6]	A	G	2.586e^-4	0.989	UTR_3_PRIME Mlc1 UPSTREAM tau DOWNSTREAM Mlc1
3R	23483203	3R_23483203_SNP [dm3] 3R_27657481_SNP [dm6]	G	C	2.586e^-4	0.989	UTR_3_PRIME Mlc1 UPSTREAM tau DOWNSTREAM Mlc1
2L	13745149	2L_13745149_DEL [dm3] 2L_13745149_DEL [dm6]	AAA	A	2.629e^-4	0.989	INTERGENIC
3L	3303208	3L_3303208_SNP [dm3] 3L_3303208_SNP [dm6]	T	A	2.632e^-4	0.989	UPSTREAM CG14968 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3303250	3L_3303250_SNP [dm3] 3L_3303250_SNP [dm6]	A	T	2.632e^-4	0.989	UPSTREAM CG14968 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
3L	3303254	3L_3303254_SNP [dm3] 3L_3303254_SNP [dm6]	T	A	2.632e^-4	0.989	UPSTREAM CG14968 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
3L	3303386	3L_3303386_SNP [dm3] 3L_3303386_SNP [dm6]	G	A	2.632e^-4	0.989	UPSTREAM CG14968 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	3303476	3L_3303476_DEL [dm3] 3L_3303476_DEL [dm6]	CTTC	C	2.632e^-4	0.989	UPSTREAM ZnT63C & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	3303610	3L_3303610_SNP [dm3] 3L_3303610_SNP [dm6]	C	G	2.632e^-4	0.989	UPSTREAM ZnT63C & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3R	27284874	3R_27284874_SNP [dm3] 3R_31459152_SNP [dm6]	C	T	2.639e^-4	0.989	SYNONYMOUS_CODING lox DOWNSTREAM CG11334	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	5807118	3R_5807118_SNP [dm3] 3R_9981396_SNP [dm6]	C	T	2.660e^-4	0.989	INTRON Glut4EF
3R	23497692	3R_23497692_SNP [dm3] 3R_27671970_SNP [dm6]	T	C	2.671e^-4	0.989	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15973841	3R_15973841_SNP [dm3] 3R_20148119_SNP [dm6]	A	T	2.672e^-4	0.989	INTERGENIC
2R	17051980	2R_17051980_SNP [dm3] 2R_21164475_SNP [dm6]	C	A	2.688e^-4	0.989	SYNONYMOUS_CODING CG4266 UTR_3_PRIME CG4266	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	19121960	X_19121960_SNP [dm3] X_19227927_SNP [dm6]	A	G	2.689e^-4	0.989	INTRON CG7884	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	18133195	3L_18133195_INS [dm3] 3L_18140095_INS [dm6]	T	AAA	2.698e^-4	0.989	INTRON gk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	1098704	2L_1098704_SNP [dm3] 2L_1098704_SNP [dm6]	T	C	2.699e^-4	0.989	INTRON CG4629
2R	17237081	2R_17237081_SNP [dm3] 2R_21349576_SNP [dm6]	T	C	2.713e^-4	0.989	SYNONYMOUS_CODING CG17974
X	4467615	X_4467615_SNP [dm3] X_4573582_SNP [dm6]	T	A	2.719e^-4	0.989	INTRON CR32773	TF binding site BDTNP1_TFBS_dl
2R	9606527	2R_9606527_SNP [dm3] 2R_13719022_SNP [dm6]	C	A	2.722e^-4	0.989	INTRON fas
3R	8126831	3R_8126831_SNP [dm3] 3R_12301109_SNP [dm6]	G	A	2.723e^-4	0.989	UTR_3_PRIME svp	TF binding site mE1_TFBS_cad
3L	3150932	3L_3150932_SNP [dm3] 3L_3150932_SNP [dm6]	T	A	2.724e^-4	0.989	SYNONYMOUS_CODING BtbVII	TF binding site mE1_TFBS_chinmo
3L	3150950	3L_3150950_SNP [dm3] 3L_3150950_SNP [dm6]	G	A	2.724e^-4	0.989	SYNONYMOUS_CODING BtbVII	TF binding site mE1_TFBS_chinmo
X	13634226	X_13634226_SNP [dm3] X_13740193_SNP [dm6]	G	T	2.752e^-4	0.989	INTRON Grip91 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	13114560	2L_13114560_SNP [dm3] 2L_13114560_SNP [dm6]	C	A	2.762e^-4	0.989	INTERGENIC
2L	13114600	2L_13114600_SNP [dm3] 2L_13114600_SNP [dm6]	G	A	2.762e^-4	0.989	INTERGENIC
X	16448288	X_16448288_SNP [dm3] X_16554255_SNP [dm6]	C	G	2.766e^-4	0.989	UPSTREAM Arp2 DOWNSTREAM Pp2B-14D INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9092794	2L_9092794_SNP [dm3] 2L_9092794_SNP [dm6]	C	T	2.775e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	22138793	3L_22138793_SNP [dm3] 3L_22145693_SNP [dm6]	C	T	2.784e^-4	0.989	INTRON olf413
2R	15273034	2R_15273034_SNP [dm3] 2R_19385529_SNP [dm6]	C	A	2.809e^-4	0.989	UPSTREAM CG10081 DOWNSTREAM CG10073 INTERGENIC
3R	15796272	3R_15796272_SNP [dm3] 3R_19970550_SNP [dm6]	A	G	2.813e^-4	0.989	INTRON Hs6st
3R	11251980	3R_11251980_SNP [dm3] 3R_15426258_SNP [dm6]	C	G	2.818e^-4	0.989	INTRON CG6118
3R	24472051	3R_24472051_SNP [dm3] 3R_28646329_SNP [dm6]	T	C	2.821e^-4	0.989	INTERGENIC
2L	9070748	2L_9070748_SNP [dm3] 2L_9070748_SNP [dm6]	A	C	2.826e^-4	0.989	UPSTREAM CR44483 INTRON CG31708
3R	5868975	3R_5868975_SNP [dm3] 3R_10043253_SNP [dm6]	A	G	2.836e^-4	0.989	UPSTREAM CG3909 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	1679529	3L_1679529_SNP [dm3] 3L_1679529_SNP [dm6]	T	C	2.856e^-4	0.989	INTRON CG7991
X	7971585	X_7971585_SNP [dm3] X_8077552_SNP [dm6]	G	A	2.862e^-4	0.989	NON_SYNONYMOUS_CODING CG1571 DOWNSTREAM CG2254	TF binding site mE1_TFBS_cad
2R	8374654	2R_8374654_SNP [dm3] 2R_12487149_SNP [dm6]	C	T	2.868e^-4	0.989	SYNONYMOUS_CODING CG34234 UTR_3_PRIME Dh44-R2 DOWNSTREAM fdl & 1 other
3R	13618832	3R_13618832_SNP [dm3] 3R_17793110_SNP [dm6]	G	A	2.882e^-4	0.989	INTRON CG43102
3L	1679399	3L_1679399_SNP [dm3] 3L_1679399_SNP [dm6]	A	C	2.886e^-4	0.989	INTRON CG7991
3L	3151323	3L_3151323_SNP [dm3] 3L_3151323_SNP [dm6]	T	C	2.893e^-4	0.989	SYNONYMOUS_CODING BtbVII	TF binding site mE1_TFBS_HSA
2L	14307185	2L_14307185_SNP [dm3] 2L_14307185_SNP [dm6]	T	A	2.905e^-4	0.989	INTRON wb
3L	18643437	3L_18643437_SNP [dm3] 3L_18650337_SNP [dm6]	T	C	2.907e^-4	0.989	INTRON MYPT-75D
2R	14557190	2R_14557190_SNP [dm3] 2R_18669685_SNP [dm6]	A	T	2.924e^-4	0.989	INTRON edl
2L	15482093	2L_15482093_SNP [dm3] 2L_15482093_SNP [dm6]	A	C	2.925e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25331485	3R_25331485_SNP [dm3] 3R_29505763_SNP [dm6]	A	T	2.932e^-4	0.989	INTERGENIC
3L	656304	3L_656304_SNP [dm3] 3L_656304_SNP [dm6]	A	C	2.947e^-4	0.989	SYNONYMOUS_CODING Rev1
2L	10096530	2L_10096530_SNP [dm3] 2L_10096530_SNP [dm6]	C	T	2.950e^-4	0.989	INTRON CG44153 & 1 other
2L	4197409	2L_4197409_SNP [dm3] 2L_4197409_SNP [dm6]	T	C	2.955e^-4	0.989	UPSTREAM CG3714 DOWNSTREAM ft INTRON CG3714	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	5184231	3L_5184231_SNP [dm3] 3L_5191131_SNP [dm6]	C	A	2.975e^-4	0.989	INTRON shep
3L	8144348	3L_8144348_SNP [dm3] 3L_8151248_SNP [dm6]	G	C	2.994e^-4	0.989	UTR_5_PRIME CG13676
X	12777355	X_12777355_SNP [dm3] X_12883322_SNP [dm6]	C	A	2.997e^-4	0.989	INTRON Pde9
3R	19705309	3R_19705309_SNP [dm3] 3R_23879587_SNP [dm6]	A	T	3.014e^-4	0.989	INTRON Pli	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	20084119	3L_20084119_SNP [dm3] 3L_20091019_SNP [dm6]	C	A	3.017e^-4	0.989	INTERGENIC
3L	17217957	3L_17217957_SNP [dm3] 3L_17224857_SNP [dm6]	C	A	3.020e^-4	0.989	INTRON Rbp6
X	6688070	X_6688070_INS [dm3] X_6794037_INS [dm6]	G	AT	3.039e^-4	0.989	INTRON C3G	TF binding site BDTNP1_TFBS_twi
2L	13732195	2L_13732195_SNP [dm3] 2L_13732195_SNP [dm6]	T	C	3.045e^-4	0.989	INTERGENIC
2R	2925219	2R_2925219_SNP [dm3] 2R_7037714_SNP [dm6]	C	T	3.046e^-4	0.989	UTR_5_PRIME CG33914 DOWNSTREAM Tsp42Ei
2R	10552628	2R_10552628_SNP [dm3] 2R_14665123_SNP [dm6]	C	T	3.050e^-4	0.989	SYNONYMOUS_CODING CG12861 DOWNSTREAM CG12860
3L	3148466	3L_3148466_DEL [dm3] 3L_3148466_DEL [dm6]	TGATTCATCA	T	3.051e^-4	0.989	UPSTREAM BtbVII & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3R	5864367	3R_5864367_SNP [dm3] 3R_10038645_SNP [dm6]	A	T	3.068e^-4	0.989	INTRON Mical
2L	10485654	2L_10485654_SNP [dm3] 2L_10485654_SNP [dm6]	T	C	3.084e^-4	0.989	SYNONYMOUS_CODING Grip75 UTR_3_PRIME CG7456
2R	8360472	2R_8360472_SNP [dm3] 2R_12472967_SNP [dm6]	G	A	3.084e^-4	0.989	SYNONYMOUS_CODING CG8550
2R	19054215	2R_19054215_SNP [dm3] 2R_23166692_SNP [dm6]	T	C	3.085e^-4	0.989	INTRON CG34371	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	26037728	3R_26037728_SNP [dm3] 3R_30212006_SNP [dm6]	T	C	3.096e^-4	0.989	UPSTREAM CecA2 & 1 other DOWNSTREAM CecA1 & 1 other INTERGENIC
X	14212393	X_14212393_SNP [dm3] X_14318360_SNP [dm6]	T	A	3.112e^-4	0.989	INTERGENIC
2R	12254926	2R_12254926_SNP [dm3] 2R_16367421_SNP [dm6]	G	A	3.114e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	5884252	3R_5884252_SNP [dm3] 3R_10058530_SNP [dm6]	G	A	3.120e^-4	0.989	INTERGENIC
2R	13835639	2R_13835639_SNP [dm3] 2R_17948134_SNP [dm6]	C	G	3.121e^-4	0.989	INTERGENIC
3R	13681654	3R_13681654_SNP [dm3] 3R_17855932_SNP [dm6]	C	T	3.139e^-4	0.989	INTRON tinc
2L	2623868	2L_2623868_SNP [dm3] 2L_2623868_SNP [dm6]	C	A	3.168e^-4	0.989	INTERGENIC
X	20752464	X_20752464_SNP [dm3] X_20881437_SNP [dm6]	G	T	3.171e^-4	0.989	DOWNSTREAM I-3 INTRON shakB
3L	20858052	3L_20858052_SNP [dm3] 3L_20864952_SNP [dm6]	T	G	3.180e^-4	0.989	INTRON CG32432
2L	7559322	2L_7559322_SNP [dm3] 2L_7559322_SNP [dm6]	A	G	3.181e^-4	0.989	INTRON RapGAP1
X	17969720	X_17969720_SNP [dm3] X_18075687_SNP [dm6]	A	G	3.186e^-4	0.989	SYNONYMOUS_CODING Dhc16F
X	17970005	X_17970005_SNP [dm3] X_18075972_SNP [dm6]	G	C	3.186e^-4	0.989	SYNONYMOUS_CODING Dhc16F	TF binding site mE1_TFBS_sens
3R	2704481	3R_2704481_SNP [dm3] 3R_6878759_SNP [dm6]	A	C	3.198e^-4	0.989	INTRON CR44931	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5081217	2L_5081217_SNP [dm3] 2L_5081217_SNP [dm6]	A	G	3.198e^-4	0.989	INTRON pgant5
3L	10881193	3L_10881193_SNP [dm3] 3L_10888093_SNP [dm6]	T	A	3.200e^-4	0.989	INTERGENIC
X	9444392	X_9444392_SNP [dm3] X_9550359_SNP [dm6]	G	C	3.204e^-4	0.989	DOWNSTREAM l_1_G0320 INTRON CG32700
3L	552094	3L_552094_INS [dm3] 3L_552094_INS [dm6]	C	AAGTG	3.213e^-4	0.989	INTRON hipk
2L	12333152	2L_12333152_SNP [dm3] 2L_12333152_SNP [dm6]	A	G	3.219e^-4	0.989	INTERGENIC
2R	8625573	2R_8625573_DEL [dm3] 2R_12738068_DEL [dm6]	TAGCCATGCTT...	T	3.222e^-4	0.989	INTRON CG42663
2R	16488143	2R_16488143_SNP [dm3] 2R_20600638_SNP [dm6]	C	T	3.229e^-4	0.989	INTRON bl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14992543	2R_14992543_SNP [dm3] 2R_19105038_SNP [dm6]	G	A	3.235e^-4	0.989	INTRON 5-HT1A
X	20258813	X_20258813_DEL [dm3] X_20387786_DEL [dm6]	CTAGCAACGTATTTAC...	C	3.237e^-4	0.989	INTERGENIC
3L	4363138	3L_4363138_SNP [dm3] 3L_4363138_SNP [dm6]	T	A	3.238e^-4	0.989	INTRON Cip4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	10029121	2L_10029121_SNP [dm3] 2L_10029121_SNP [dm6]	C	G	3.243e^-4	0.989	UTR_3_PRIME CG13127
2R	14992561	2R_14992561_SNP [dm3] 2R_19105056_SNP [dm6]	A	T	3.248e^-4	0.989	INTRON 5-HT1A
X	20727949	X_20727949_SNP [dm3] X_20856922_SNP [dm6]	A	T	3.254e^-4	0.989	INTRON shakB	transposable element FlyBase
X	16448275	X_16448275_SNP [dm3] X_16554242_SNP [dm6]	T	G	3.254e^-4	0.989	UPSTREAM Arp2 DOWNSTREAM Pp2B-14D INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Ubx
X	16448316	X_16448316_INS [dm3] X_16554283_INS [dm6]	A	AA	3.254e^-4	0.989	UPSTREAM Arp2 DOWNSTREAM Pp2B-14D INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3147910	3L_3147910_SNP [dm3] 3L_3147910_SNP [dm6]	G	A	3.273e^-4	0.989	SYNONYMOUS_CODING CG12082 UPSTREAM BtbVII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
X	20038808	X_20038808_SNP [dm3] X_20144775_SNP [dm6]	G	C	3.284e^-4	0.989	INTERGENIC
X	20038915	X_20038915_SNP [dm3] X_20144882_SNP [dm6]	C	G	3.284e^-4	0.989	INTERGENIC
2R	11963372	2R_11963372_INS [dm3] 2R_16075867_INS [dm6]	G	GTCGTG	3.296e^-4	0.989	INTERGENIC
3R	23184597	3R_23184597_SNP [dm3] 3R_27358875_SNP [dm6]	C	T	3.296e^-4	0.989	UPSTREAM CG42534 INTRON CG42534
3R	23184608	3R_23184608_SNP [dm3] 3R_27358886_SNP [dm6]	A	T	3.296e^-4	0.989	UPSTREAM CG42534 INTRON CG42534
3R	23184612	3R_23184612_SNP [dm3] 3R_27358890_SNP [dm6]	G	A	3.296e^-4	0.989	UPSTREAM CG42534 INTRON CG42534
3L	15275536	3L_15275536_SNP [dm3] 3L_15282436_SNP [dm6]	T	C	3.298e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	15275558	3L_15275558_SNP [dm3] 3L_15282458_SNP [dm6]	T	A	3.298e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	3139310	3L_3139310_SNP [dm3] 3L_3139310_SNP [dm6]	C	T	3.299e^-4	0.989	INTRON CG11537
2L	9070908	2L_9070908_SNP [dm3] 2L_9070908_SNP [dm6]	C	T	3.314e^-4	0.989	UTR_5_PRIME CG31708 UPSTREAM CR44483 INTRON CG31708
2L	9070926	2L_9070926_SNP [dm3] 2L_9070926_SNP [dm6]	G	T	3.314e^-4	0.989	UTR_5_PRIME CG31708 UPSTREAM CR44483 INTRON CG31708
3R	25665920	3R_25665920_DEL [dm3] 3R_29840198_DEL [dm6]	CCTC	C	3.321e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	20639668	2R_20639668_SNP [dm3] 2R_24752145_SNP [dm6]	C	T	3.329e^-4	0.989	INTRON CG30421
3R	23124202	3R_23124202_DEL [dm3] 3R_27298480_DEL [dm6]	TT	T	3.345e^-4	0.989	INTRON CG3339	TF binding site mE1_TFBS_chinmo
3R	25415302	3R_25415302_SNP [dm3] 3R_29589580_SNP [dm6]	T	C	3.372e^-4	0.989	SYNONYMOUS_CODING CG11470 DOWNSTREAM CG31041	TF binding site mE1_TFBS_cad
2R	13831012	2R_13831012_SNP [dm3] 2R_17943507_SNP [dm6]	G	T	3.391e^-4	0.989	INTERGENIC
2L	3437226	2L_3437226_SNP [dm3] 2L_3437226_SNP [dm6]	C	T	3.399e^-4	0.989	INTERGENIC
3L	14513804	3L_14513804_SNP [dm3] 3L_14520704_SNP [dm6]	G	T	3.410e^-4	0.989	INTRON bbg & 1 other
3R	26037462	3R_26037462_SNP [dm3] 3R_30211740_SNP [dm6]	C	G	3.419e^-4	0.989	UPSTREAM CecA2 DOWNSTREAM CecA1 EXON Cec-Psi1
3L	8145556	3L_8145556_SNP [dm3] 3L_8152456_SNP [dm6]	G	A	3.420e^-4	0.989	UPSTREAM CG13676 INTERGENIC
3L	4619814	3L_4619814_SNP [dm3] 3L_4619814_SNP [dm6]	A	G	3.424e^-4	0.989	INTRON Src64B	TF binding site mE1_TFBS_HSA
3L	4619821	3L_4619821_SNP [dm3] 3L_4619821_SNP [dm6]	A	C	3.424e^-4	0.989	INTRON Src64B	TF binding site mE1_TFBS_HSA
2L	697526	2L_697526_SNP [dm3] 2L_697526_SNP [dm6]	G	A	3.427e^-4	0.989	INTRON ds	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	15445701	X_15445701_SNP [dm3] X_15551668_SNP [dm6]	T	G	3.437e^-4	0.989	INTRON Ac13E	TF binding site mE1_TFBS_Kr
2L	9526347	2L_9526347_SNP [dm3] 2L_9526347_SNP [dm6]	G	A	3.446e^-4	0.989	INTRON Oatp30B	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	14927944	3R_14927944_INS [dm3] 3R_19102222_INS [dm6]	C	CTC	3.460e^-4	0.989	INTRON CG6040
2R	9954652	2R_9954652_DEL [dm3] 2R_14067147_DEL [dm6]	ATAGCA	A	3.469e^-4	0.989	INTRON Prosap
3R	20103360	3R_20103360_SNP [dm3] 3R_24277638_SNP [dm6]	C	A	3.473e^-4	0.989	NON_SYNONYMOUS_CODING Orct	TF binding site mE1_TFBS_chinmo
3R	17820717	3R_17820717_SNP [dm3] 3R_21994995_SNP [dm6]	A	C	3.482e^-4	0.989	INTRON Eip93F
2L	6701016	2L_6701016_SNP [dm3] 2L_6701016_SNP [dm6]	G	A	3.493e^-4	0.989	INTRON Tsp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	1881624	X_1881624_SNP [dm3] X_1987591_SNP [dm6]	G	A	3.521e^-4	0.989	INTRON Hr4
3L	3150571	3L_3150571_SNP [dm3] 3L_3150571_SNP [dm6]	C	T	3.523e^-4	0.989	SYNONYMOUS_CODING BtbVII	TF binding site mE1_TFBS_chinmo
3R	23798631	3R_23798631_SNP [dm3] 3R_27972909_SNP [dm6]	T	A	3.527e^-4	0.989	INTRON betaTub97EF
X	4467609	X_4467609_SNP [dm3] X_4573576_SNP [dm6]	T	A	3.530e^-4	0.989	INTRON CR32773	TF binding site BDTNP1_TFBS_dl
2R	18569724	2R_18569724_SNP [dm3] 2R_22682219_SNP [dm6]	A	G	3.534e^-4	0.989	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	17087635	3R_17087635_SNP [dm3] 3R_21261913_SNP [dm6]	G	T	3.535e^-4	0.989	SYNONYMOUS_CODING ETHR INTRON ETHR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17087636	3R_17087636_SNP [dm3] 3R_21261914_SNP [dm6]	C	T	3.535e^-4	0.989	SYNONYMOUS_CODING ETHR INTRON ETHR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6015951	2L_6015951_SNP [dm3] 2L_6015951_SNP [dm6]	G	A	3.536e^-4	0.989	INTRON H2.0
3L	8857692	3L_8857692_SNP [dm3] 3L_8864592_SNP [dm6]	C	A	3.536e^-4	0.989	INTRON dally
3L	14316427	3L_14316427_SNP [dm3] 3L_14323327_SNP [dm6]	G	T	3.542e^-4	0.989	INTRON fz & 1 other
3L	3149179	3L_3149179_SNP [dm3] 3L_3149179_SNP [dm6]	C	A	3.542e^-4	0.989	UPSTREAM CG12082 INTRON BtbVII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	11161113	X_11161113_SNP [dm3] X_11267080_SNP [dm6]	A	T	3.556e^-4	0.989	INTRON CG44422
2L	4654543	2L_4654543_SNP [dm3] 2L_4654543_SNP [dm6]	G	A	3.557e^-4	0.989	INTERGENIC
X	9127198	X_9127198_SNP [dm3] X_9233165_SNP [dm6]	G	C	3.573e^-4	0.989	NON_SYNONYMOUS_CODING Ir8a UPSTREAM CG12121	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	16195812	3R_16195812_SNP [dm3] 3R_20370090_SNP [dm6]	G	A	3.585e^-4	0.989	INTERGENIC
2L	11227481	2L_11227481_SNP [dm3] 2L_11227481_SNP [dm6]	G	A	3.601e^-4	0.989	INTRON ab
3R	17165416	3R_17165416_DEL [dm3] 3R_21339694_DEL [dm6]	TGTGTGT	T	3.602e^-4	0.989	INTRON CG16791	TF binding site BDTNP1_TFBS_dl
3L	2104380	3L_2104380_SNP [dm3] 3L_2104380_SNP [dm6]	G	A	3.609e^-4	0.989	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13114603	2L_13114603_SNP [dm3] 2L_13114603_SNP [dm6]	A	G	3.615e^-4	0.989	INTERGENIC
2L	4253073	2L_4253073_INS [dm3] 2L_4253073_INS [dm6]	T	TGT	3.632e^-4	0.989	INTERGENIC
3L	5193699	3L_5193699_SNP [dm3] 3L_5200599_SNP [dm6]	C	T	3.646e^-4	0.989	INTRON shep
3R	7352616	3R_7352616_SNP [dm3] 3R_11526894_SNP [dm6]	T	A	3.671e^-4	0.989	INTERGENIC
2L	3947492	2L_3947492_SNP [dm3] 2L_3947492_SNP [dm6]	T	A	3.699e^-4	0.989	INTRON fred
2L	3947501	2L_3947501_SNP [dm3] 2L_3947501_SNP [dm6]	T	A	3.699e^-4	0.989	INTRON fred
3L	5055873	3L_5055873_SNP [dm3] 3L_5055873_SNP [dm6]	C	T	3.707e^-4	0.989	INTRON Con
3L	16399696	3L_16399696_SNP [dm3] 3L_16406596_SNP [dm6]	T	C	3.716e^-4	0.989	INTRON fax	TF binding site BDTNP1_TFBS_dl
3L	3758375	3L_3758375_DEL [dm3] 3L_3758375_DEL [dm6]	ATTTACA	A	3.719e^-4	0.989	INTRON CG32264	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	10053453	2L_10053453_SNP [dm3] 2L_10053453_SNP [dm6]	G	T	3.724e^-4	0.989	UPSTREAM CR44875 & 1 other INTERGENIC
3L	3303660	3L_3303660_SNP [dm3] 3L_3303660_SNP [dm6]	A	T	3.738e^-4	0.989	UPSTREAM ZnT63C & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2L	4870974	2L_4870974_SNP [dm3] 2L_4870974_SNP [dm6]	C	T	3.738e^-4	0.989	INTRON pog	TF binding site mE1_TFBS_HSA
2L	6734820	2L_6734820_SNP [dm3] 2L_6734820_SNP [dm6]	T	C	3.738e^-4	0.989	SYNONYMOUS_CODING TTLL3B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8917144	2R_8917144_SNP [dm3] 2R_13029639_SNP [dm6]	T	A	3.741e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7997900	3L_7997900_SNP [dm3] 3L_8004800_SNP [dm6]	G	C	3.763e^-4	0.989	INTRON nmo
2R	11486678	2R_11486678_SNP [dm3] 2R_15599173_SNP [dm6]	G	A	3.785e^-4	0.989	INTERGENIC
3L	1261966	3L_1261966_SNP [dm3] 3L_1261966_SNP [dm6]	G	T	3.799e^-4	0.989	SYNONYMOUS_CODING CG9134
2R	10520389	2R_10520389_SNP [dm3] 2R_14632884_SNP [dm6]	A	G	3.808e^-4	0.989	INTERGENIC
2L	6535619	2L_6535619_SNP [dm3] 2L_6535619_SNP [dm6]	C	T	3.824e^-4	0.989	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	25065692	3R_25065692_SNP [dm3] 3R_29239970_SNP [dm6]	T	C	3.830e^-4	0.989	UTR_5_PRIME CG31427 DOWNSTREAM CG31445
2L	15033073	2L_15033073_SNP [dm3] 2L_15033073_SNP [dm6]	G	T	3.835e^-4	0.989	UTR_3_PRIME GABA-B-R1
3L	20856998	3L_20856998_SNP [dm3] 3L_20863898_SNP [dm6]	C	A	3.844e^-4	0.989	INTRON CG32432
3L	5181628	3L_5181628_SNP [dm3] 3L_5188528_SNP [dm6]	T	A	3.856e^-4	0.989	INTRON shep	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	5877647	X_5877647_SNP [dm3] X_5983614_SNP [dm6]	C	A	3.856e^-4	0.989	INTRON Grip
2L	13732191	2L_13732191_SNP [dm3] 2L_13732191_SNP [dm6]	T	C	3.862e^-4	0.989	INTERGENIC
2L	3437253	2L_3437253_SNP [dm3] 2L_3437253_SNP [dm6]	C	T	3.863e^-4	0.989	INTERGENIC
2R	17052058	2R_17052058_SNP [dm3] 2R_21164553_SNP [dm6]	A	G	3.872e^-4	0.989	SYNONYMOUS_CODING CG4266 UTR_3_PRIME CG4266	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	7416098	2R_7416098_SNP [dm3] 2R_11528593_SNP [dm6]	A	G	3.874e^-4	0.989	UPSTREAM en INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
2R	7417761	2R_7417761_SNP [dm3] 2R_11530256_SNP [dm6]	T	A	3.874e^-4	0.989	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3R	18812440	3R_18812440_SNP [dm3] 3R_22986718_SNP [dm6]	C	A	3.889e^-4	0.989	NON_SYNONYMOUS_CODING Nha2 UPSTREAM Or94a	TF binding site mE1_TFBS_cad
3L	3150894	3L_3150894_SNP [dm3] 3L_3150894_SNP [dm6]	T	G	3.894e^-4	0.989	INTRON BtbVII	TF binding site mE1_TFBS_chinmo
2L	9087382	2L_9087382_SNP [dm3] 2L_9087382_SNP [dm6]	C	T	3.901e^-4	0.989	SYNONYMOUS_CODING Toll-4
3R	9990822	3R_9990822_SNP [dm3] 3R_14165100_SNP [dm6]	G	C	3.902e^-4	0.989	DOWNSTREAM Dop1R1 INTERGENIC
X	3150389	X_3150389_SNP [dm3] X_3256356_SNP [dm6]	T	A	3.904e^-4	0.989	INTRON dnc
X	20746492	X_20746492_SNP [dm3] X_20875465_SNP [dm6]	G	T	3.906e^-4	0.989	DOWNSTREAM CR11235 INTRON shakB
3R	21470095	3R_21470095_INS [dm3] 3R_25644373_INS [dm6]	T	TT	3.926e^-4	0.989	INTRON jigr1
2L	2544069	2L_2544069_SNP [dm3] 2L_2544069_SNP [dm6]	A	G	3.942e^-4	0.989	INTERGENIC
X	13988861	X_13988861_SNP [dm3] X_14094828_SNP [dm6]	C	A	3.954e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	10062412	2R_10062412_SNP [dm3] 2R_14174907_SNP [dm6]	A	C	3.964e^-4	0.989	INTRON cg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_zfh1
2R	10066516	2R_10066516_SNP [dm3] 2R_14179011_SNP [dm6]	G	A	3.964e^-4	0.989	SYNONYMOUS_CODING cg	TF binding site mE1_TFBS_HSA
2R	13332624	2R_13332624_SNP [dm3] 2R_17445119_SNP [dm6]	A	T	3.969e^-4	0.989	UPSTREAM EDTP DOWNSTREAM mthl4 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	6534172	2L_6534172_SNP [dm3] 2L_6534172_SNP [dm6]	C	T	3.972e^-4	0.989	INTRON eya	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	11242340	2L_11242340_SNP [dm3] 2L_11242340_SNP [dm6]	A	T	3.979e^-4	0.989	INTRON ab
X	15028332	X_15028332_SNP [dm3] X_15134299_SNP [dm6]	C	A	3.987e^-4	0.989	INTRON drd
2L	3222027	2L_3222027_SNP [dm3] 2L_3222027_SNP [dm6]	A	G	3.995e^-4	0.989	INTERGENIC
2L	1063996	2L_1063996_SNP [dm3] 2L_1063996_SNP [dm6]	A	G	4.000e^-4	0.989	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	20125361	2R_20125361_SNP [dm3] 2R_24237838_SNP [dm6]	C	G	4.004e^-4	0.989	EXON CR44827
X	13370787	X_13370787_SNP [dm3] X_13476754_SNP [dm6]	C	T	4.011e^-4	0.989	INTRON Neto
3L	1378772	3L_1378772_SNP [dm3] 3L_1378772_SNP [dm6]	T	A	4.016e^-4	0.989	INTRON Ptp61F & 1 other
3L	9601616	3L_9601616_SNP [dm3] 3L_9608516_SNP [dm6]	C	A	4.024e^-4	0.989	SYNONYMOUS_CODING CG3280	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	2313340	3L_2313340_SNP [dm3] 3L_2313340_SNP [dm6]	A	C	4.024e^-4	0.989	INTERGENIC
3L	4476672	3L_4476672_SNP [dm3] 3L_4476672_SNP [dm6]	A	G	4.026e^-4	0.989	INTERGENIC
3L	13371171	3L_13371171_SNP [dm3] 3L_13378071_SNP [dm6]	T	C	4.033e^-4	0.989	UPSTREAM SNCF INTRON CG14111	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13999093	2R_13999093_SNP [dm3] 2R_18111588_SNP [dm6]	C	T	4.034e^-4	0.989	INTERGENIC
3R	16962910	3R_16962910_SNP [dm3] 3R_21137188_SNP [dm6]	G	A	4.035e^-4	0.989	SYNONYMOUS_CODING Ubpy	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3633278	3L_3633278_SNP [dm3] 3L_3633278_SNP [dm6]	G	T	4.048e^-4	0.989	INTRON dar1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20611027	2R_20611027_SNP [dm3] 2R_24723504_SNP [dm6]	A	G	4.056e^-4	0.989	INTRON Mid1	TF binding site BDTNP1_TFBS_twi
2R	13793044	2R_13793044_SNP [dm3] 2R_17905539_SNP [dm6]	G	A	4.062e^-4	0.989	INTRON Elk
2L	14408250	2L_14408250_SNP [dm3] 2L_14408250_SNP [dm6]	G	A	4.084e^-4	0.989	INTRON elB
2R	12311473	2R_12311473_SNP [dm3] 2R_16423968_SNP [dm6]	T	C	4.097e^-4	0.989	INTRON Sema-2b
X	5001081	X_5001081_SNP [dm3] X_5107048_SNP [dm6]	G	A	4.113e^-4	0.989	INTRON rg & 1 other
X	9272366	X_9272366_SNP [dm3] X_9378333_SNP [dm6]	T	G	4.121e^-4	0.989	INTRON mgl
2R	2937866	2R_2937866_SNP [dm3] 2R_7050361_SNP [dm6]	T	C	4.138e^-4	0.989	INTRON lbm	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	15393282	X_15393282_SNP [dm3] X_15499249_SNP [dm6]	C	T	4.138e^-4	0.989	UTR_5_PRIME Gmap INTRON Gmap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19915664	3R_19915664_SNP [dm3] 3R_24089942_SNP [dm6]	C	T	4.141e^-4	0.989	INTRON 4EHP
3R	16724925	3R_16724925_SNP [dm3] 3R_20899203_SNP [dm6]	T	C	4.148e^-4	0.989	INTERGENIC
X	20727950	X_20727950_INS [dm3] X_20856923_INS [dm6]	T	TA	4.155e^-4	0.989	INTRON shakB	transposable element FlyBase
X	20727961	X_20727961_SNP [dm3] X_20856934_SNP [dm6]	T	A	4.155e^-4	0.989	INTRON shakB	transposable element FlyBase
3R	3480347	3R_3480347_SNP [dm3] 3R_7654625_SNP [dm6]	G	T	4.166e^-4	0.989	INTERGENIC
2L	5965921	2L_5965921_SNP [dm3] 2L_5965921_SNP [dm6]	G	A	4.166e^-4	0.989	SYNONYMOUS_CODING CG13992 UPSTREAM psd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	27285456	3R_27285456_SNP [dm3] 3R_31459734_SNP [dm6]	C	G	4.189e^-4	0.989	UTR_5_PRIME lox DOWNSTREAM CG11334	TF binding site mE1_TFBS_sens
3R	14175778	3R_14175778_DEL [dm3] 3R_18350056_DEL [dm6]	CTAAGTATAT	C	4.198e^-4	0.989	INTRON CG15803
3R	26037164	3R_26037164_SNP [dm3] 3R_30211442_SNP [dm6]	T	C	4.236e^-4	0.989	UPSTREAM Cec-Psi1 & 1 other DOWNSTREAM CecA1 INTERGENIC
3R	26037177	3R_26037177_MNP [dm3] 3R_30211455_MNP [dm6]	GTT	TGC	4.236e^-4	0.989	UPSTREAM Cec-Psi1 & 1 other DOWNSTREAM CecA1 INTERGENIC
3R	26037182	3R_26037182_SNP [dm3] 3R_30211460_SNP [dm6]	A	G	4.236e^-4	0.989	UPSTREAM Cec-Psi1 & 1 other DOWNSTREAM CecA1 INTERGENIC
2R	14888318	2R_14888318_SNP [dm3] 2R_19000813_SNP [dm6]	C	T	4.248e^-4	0.989	INTRON tn
2L	7492746	2L_7492746_SNP [dm3] 2L_7492746_SNP [dm6]	T	C	4.252e^-4	0.989	INTRON Ziz
X	11327215	X_11327215_SNP [dm3] X_11433182_SNP [dm6]	G	C	4.254e^-4	0.989	UTR_3_PRIME Evi5
2L	9494867	2L_9494867_SNP [dm3] 2L_9494867_SNP [dm6]	T	G	4.259e^-4	0.989	UTR_5_PRIME Gdi UPSTREAM CG33298 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	21501348	3L_21501348_DEL [dm3] 3L_21508248_DEL [dm6]	CTG	C	4.261e^-4	0.989	UTR_5_PRIME M6 UPSTREAM Glg1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3303695	3L_3303695_SNP [dm3] 3L_3303695_SNP [dm6]	C	A	4.262e^-4	0.989	UPSTREAM ZnT63C & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3R	17087668	3R_17087668_SNP [dm3] 3R_21261946_SNP [dm6]	C	T	4.262e^-4	0.989	SYNONYMOUS_CODING ETHR INTRON ETHR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	12776368	X_12776368_SNP [dm3] X_12882335_SNP [dm6]	A	G	4.276e^-4	0.989	INTRON Pde9
3L	1558660	3L_1558660_SNP [dm3] 3L_1558660_SNP [dm6]	G	C	4.282e^-4	0.989	UTR_5_PRIME Pex10 UPSTREAM Pex10 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16583396	X_16583396_DEL [dm3] X_16689363_DEL [dm6]	ATTTTCCT	A	4.289e^-4	0.989	INTRON Sep4
X	21042331	X_21042331_SNP [dm3] X_21171304_SNP [dm6]	C	T	4.319e^-4	0.989	INTERGENIC	transposable element FlyBase
3L	13186417	3L_13186417_SNP [dm3] 3L_13193317_SNP [dm6]	C	A	4.324e^-4	0.989	INTERGENIC
X	17970188	X_17970188_SNP [dm3] X_18076155_SNP [dm6]	T	C	4.331e^-4	0.989	SYNONYMOUS_CODING Dhc16F	TF binding site mE1_TFBS_sens
2R	15951416	2R_15951416_SNP [dm3] 2R_20063911_SNP [dm6]	A	G	4.338e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	5476951	2L_5476951_INS [dm3] 2L_5476951_INS [dm6]	G	GG	4.347e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3R	22309334	3R_22309334_SNP [dm3] 3R_26483612_SNP [dm6]	G	T	4.365e^-4	0.989	INTRON plum
3L	22169074	3L_22169074_SNP [dm3] 3L_22175974_SNP [dm6]	A	T	4.388e^-4	0.989	INTRON olf413	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_Ubx
X	3150830	X_3150830_SNP [dm3] X_3256797_SNP [dm6]	A	T	4.397e^-4	0.989	INTRON dnc
3L	5768808	3L_5768808_SNP [dm3] 3L_5775708_SNP [dm6]	A	G	4.401e^-4	0.989	UTR_3_PRIME scny DOWNSTREAM vito
2L	1493661	2L_1493661_SNP [dm3] 2L_1493661_SNP [dm6]	G	A	4.403e^-4	0.989	UTR_3_PRIME CG31928 UPSTREAM CG33128 DOWNSTREAM CG31928
3R	25508549	3R_25508549_SNP [dm3] 3R_29682827_SNP [dm6]	G	C	4.411e^-4	0.989	UPSTREAM CG7582 INTRON Gycalpha99B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
X	5580978	X_5580978_SNP [dm3] X_5686945_SNP [dm6]	A	T	4.418e^-4	0.989	SPLICE_SITE_REGION CG3160 INTRON CG3160	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	5580985	X_5580985_SNP [dm3] X_5686952_SNP [dm6]	A	G	4.418e^-4	0.989	INTRON CG3160	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	5581006	X_5581006_SNP [dm3] X_5686973_SNP [dm6]	T	G	4.418e^-4	0.989	INTRON CG3160	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	14960334	2L_14960334_SNP [dm3] 2L_14960334_SNP [dm6]	T	C	4.431e^-4	0.989	INTRON CG42313
2R	8625608	2R_8625608_SNP [dm3] 2R_12738103_SNP [dm6]	T	C	4.470e^-4	0.989	INTRON CG42663
2R	13042382	2R_13042382_SNP [dm3] 2R_17154877_SNP [dm6]	A	C	4.474e^-4	0.989	SYNONYMOUS_CODING CG17290
2R	19094609	2R_19094609_SNP [dm3] 2R_23207086_SNP [dm6]	C	T	4.483e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	6241351	2L_6241351_SNP [dm3] 2L_6241351_SNP [dm6]	G	C	4.490e^-4	0.989	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	2790933	X_2790933_SNP [dm3] X_2896900_SNP [dm6]	G	T	4.516e^-4	0.989	INTRON kirre
3L	8038645	3L_8038645_SNP [dm3] 3L_8045545_SNP [dm6]	C	A	4.521e^-4	0.989	INTRON nmo
3R	18006061	3R_18006061_SNP [dm3] 3R_22180339_SNP [dm6]	C	T	4.552e^-4	0.989	INTRON SKIP
2R	7067176	2R_7067176_INS [dm3] 2R_11179671_INS [dm6]	G	GGTG	4.554e^-4	0.989	INTRON shn
2L	11358794	2L_11358794_SNP [dm3] 2L_11358794_SNP [dm6]	C	T	4.567e^-4	0.989	UPSTREAM salr INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	8652752	3L_8652752_SNP [dm3] 3L_8659652_SNP [dm6]	G	A	4.578e^-4	0.989	INTERGENIC
2R	1727395	2R_1727395_SNP [dm3] 2R_5839890_SNP [dm6]	G	A	4.594e^-4	0.989	INTRON dpr12
2R	8360688	2R_8360688_SNP [dm3] 2R_12473183_SNP [dm6]	T	C	4.595e^-4	0.989	SYNONYMOUS_CODING CG8550
X	20259031	X_20259031_SNP [dm3] X_20388004_SNP [dm6]	C	T	4.608e^-4	0.989	INTERGENIC
2R	11081030	2R_11081030_SNP [dm3] 2R_15193525_SNP [dm6]	A	T	4.609e^-4	0.989	UPSTREAM Sfp51E DOWNSTREAM CG43829 INTERGENIC
X	10307424	X_10307424_SNP [dm3] X_10413391_SNP [dm6]	A	G	4.615e^-4	0.989	SYNONYMOUS_CODING CG32683	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17301759	2L_17301759_SNP [dm3] 2L_17301759_SNP [dm6]	G	A	4.619e^-4	0.989	INTERGENIC
3L	2107311	3L_2107311_SNP [dm3] 3L_2107311_SNP [dm6]	C	A	4.621e^-4	0.989	INTRON sls	TF binding site BDTNP1_TFBS_dl
3L	7985794	3L_7985794_SNP [dm3] 3L_7992694_SNP [dm6]	G	A	4.626e^-4	0.989	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	10406231	3R_10406231_SNP [dm3] 3R_14580509_SNP [dm6]	G	A	4.645e^-4	0.989	INTRON stumps	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	7652747	2R_7652747_SNP [dm3] 2R_11765242_SNP [dm6]	G	T	4.647e^-4	0.989	INTRON ths
2L	9269478	2L_9269478_SNP [dm3] 2L_9269478_SNP [dm6]	A	G	4.666e^-4	0.989	INTRON Ggamma30A
X	22182487	X_22182487_DEL [dm3] X_22780651_DEL [dm6]	CGATAATATGGCAT...	TC	4.675e^-4	0.989	INTRON CR44997	transposable element FlyBase
3L	10833074	3L_10833074_SNP [dm3] 3L_10839974_SNP [dm6]	C	T	4.684e^-4	0.989	INTERGENIC
2L	1063520	2L_1063520_SNP [dm3] 2L_1063520_SNP [dm6]	A	G	4.688e^-4	0.989	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10105271	2L_10105271_INS [dm3] 2L_10105271_INS [dm6]	T	TT	4.707e^-4	0.989	INTRON CG44153 & 1 other
2L	15039183	2L_15039183_SNP [dm3] 2L_15039183_SNP [dm6]	G	C	4.708e^-4	0.989	UPSTREAM Su_H_ & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	23121560	3R_23121560_SNP [dm3] 3R_27295838_SNP [dm6]	C	T	4.716e^-4	0.989	SYNONYMOUS_CODING CG3339	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6016019	2L_6016019_INS [dm3] 2L_6016019_INS [dm6]	C	CGGCC	4.732e^-4	0.989	INTRON H2.0	TF binding site mE1_TFBS_inv
2L	15743853	2L_15743853_SNP [dm3] 2L_15743853_SNP [dm6]	G	A	4.739e^-4	0.989	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Stat92E
2R	20125377	2R_20125377_SNP [dm3] 2R_24237854_SNP [dm6]	A	C	4.746e^-4	0.989	EXON CR44827
2L	10452935	2L_10452935_SNP [dm3] 2L_10452935_SNP [dm6]	T	C	4.748e^-4	0.989	SYNONYMOUS_CODING CG5322 UPSTREAM ppk10
2L	15795897	2L_15795897_SNP [dm3] 2L_15795897_SNP [dm6]	C	T	4.752e^-4	0.989	INTERGENIC
3R	24880925	3R_24880925_SNP [dm3] 3R_29055203_SNP [dm6]	G	A	4.756e^-4	0.989	SYNONYMOUS_CODING CG11843 UPSTREAM Sirt7	TF binding site BDTNP1_TFBS_dl
2R	9739773	2R_9739773_SNP [dm3] 2R_13852268_SNP [dm6]	A	G	4.759e^-4	0.989	NON_SYNONYMOUS_CODING CG30485 DOWNSTREAM CG6543
3L	1557314	3L_1557314_SNP [dm3] 3L_1557314_SNP [dm6]	G	A	4.764e^-4	0.989	SYNONYMOUS_CODING CG12099 UPSTREAM Pex10	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	8861578	3L_8861578_SNP [dm3] 3L_8868478_SNP [dm6]	C	A	4.766e^-4	0.989	INTRON dally
2R	13792997	2R_13792997_SNP [dm3] 2R_17905492_SNP [dm6]	A	C	4.775e^-4	0.989	INTRON Elk
2L	14655005	2L_14655005_SNP [dm3] 2L_14655005_SNP [dm6]	A	G	4.786e^-4	0.989	INTRON osp
3L	17261424	3L_17261424_SNP [dm3] 3L_17268324_SNP [dm6]	C	T	4.787e^-4	0.989	INTERGENIC
3L	16987487	3L_16987487_DEL [dm3] 3L_16994387_DEL [dm6]	ACAAGAAACAGAA...	A	4.801e^-4	0.989	UTR_3_PRIME Exn DOWNSTREAM CG3764 & 1 other INTRAGENIC Exn INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	9526771	2L_9526771_SNP [dm3] 2L_9526771_SNP [dm6]	T	A	4.818e^-4	0.989	INTRON Oatp30B
2L	5555378	2L_5555378_SNP [dm3] 2L_5555378_SNP [dm6]	T	A	4.830e^-4	0.989	SYNONYMOUS_CODING GluRIIA DOWNSTREAM CG14017
3L	7744099	3L_7744099_SNP [dm3] 3L_7750999_SNP [dm6]	G	A	4.849e^-4	0.989	DOWNSTREAM CG13685 INTRON CG32373
3R	18792763	3R_18792763_SNP [dm3] 3R_22967041_SNP [dm6]	G	C	4.856e^-4	0.989	UTR_3_PRIME Tpl94D	TF binding site mE1_TFBS_cad
2R	9954306	2R_9954306_SNP [dm3] 2R_14066801_SNP [dm6]	T	C	4.874e^-4	0.989	INTRON Prosap
2R	9954404	2R_9954404_SNP [dm3] 2R_14066899_SNP [dm6]	A	G	4.874e^-4	0.989	INTRON Prosap
2R	9954591	2R_9954591_SNP [dm3] 2R_14067086_SNP [dm6]	G	A	4.874e^-4	0.989	INTRON Prosap
2R	12311521	2R_12311521_DEL [dm3] 2R_16424016_DEL [dm6]	TT	T	4.876e^-4	0.989	INTRON Sema-2b
X	9443788	X_9443788_SNP [dm3] X_9549755_SNP [dm6]	G	T	4.883e^-4	0.989	INTRON CG32700
3R	16195775	3R_16195775_SNP [dm3] 3R_20370053_SNP [dm6]	T	C	4.898e^-4	0.989	INTERGENIC
2R	8970745	2R_8970745_INS [dm3] 2R_13083240_INS [dm6]	C	CC	4.904e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	15393304	X_15393304_DEL [dm3] X_15499271_DEL [dm6]	TT	T	4.908e^-4	0.989	UTR_5_PRIME Gmap INTRON Gmap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5716886	2R_5716886_SNP [dm3] 2R_9829381_SNP [dm6]	C	A	4.909e^-4	0.989	NON_SYNONYMOUS_CODING hebe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4376831	3L_4376831_SNP [dm3] 3L_4376831_SNP [dm6]	G	C	4.912e^-4	0.989	DOWNSTREAM CR44360 INTRON DopEcR
2L	2019206	2L_2019206_SNP [dm3] 2L_2019206_SNP [dm6]	G	A	4.919e^-4	0.989	INTRON CG4238	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	15273019	2R_15273019_SNP [dm3] 2R_19385514_SNP [dm6]	G	T	4.924e^-4	0.989	UPSTREAM CG10081 DOWNSTREAM CG10073 INTERGENIC
2L	1999494	2L_1999494_SNP [dm3] 2L_1999494_SNP [dm6]	C	G	4.940e^-4	0.989	UPSTREAM CR43464 INTRON CG33543
2L	20405790	2L_20405790_SNP [dm3] 2L_20405790_SNP [dm6]	G	A	4.969e^-4	0.989	INTRON CG10947
2L	15740763	2L_15740763_SNP [dm3] 2L_15740763_SNP [dm6]	T	A	5.024e^-4	0.989	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1266401	3L_1266401_SNP [dm3] 3L_1266401_SNP [dm6]	C	T	5.037e^-4	0.989	INTRON CG9134
2R	19037100	2R_19037100_SNP [dm3] 2R_23149577_SNP [dm6]	T	A	5.038e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_sens
3L	8650017	3L_8650017_SNP [dm3] 3L_8656917_SNP [dm6]	G	C	5.046e^-4	0.989	INTERGENIC
3L	7107277	3L_7107277_DEL [dm3] 3L_7114177_DEL [dm6]	AA	A	5.050e^-4	0.989	INTRON form3
3R	15780371	3R_15780371_SNP [dm3] 3R_19954649_SNP [dm6]	A	T	5.052e^-4	0.989	INTRON Hs6st
2L	9604388	2L_9604388_SNP [dm3] 2L_9604388_SNP [dm6]	T	C	5.063e^-4	0.989	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	6809941	2R_6809941_SNP [dm3] 2R_10922436_SNP [dm6]	A	G	5.073e^-4	0.989	INTERGENIC
2L	4196350	2L_4196350_SNP [dm3] 2L_4196350_SNP [dm6]	G	C	5.077e^-4	0.989	INTRON CG3714	TF binding site mE1_TFBS_inv
3R	24138891	3R_24138891_SNP [dm3] 3R_28313169_SNP [dm6]	C	G	5.093e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_cad
2L	12633558	2L_12633558_SNP [dm3] 2L_12633558_SNP [dm6]	A	T	5.097e^-4	0.989	INTRON Ref2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
X	11843595	X_11843595_SNP [dm3] X_11949562_SNP [dm6]	C	T	5.098e^-4	0.989	INTRON cac	TF binding site mE1_TFBS_HSA
2L	11659305	2L_11659305_SNP [dm3] 2L_11659305_SNP [dm6]	G	A	5.098e^-4	0.989	DOWNSTREAM CR44497 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	18693758	3R_18693758_SNP [dm3] 3R_22868036_SNP [dm6]	C	T	5.102e^-4	0.989	INTERGENIC
2L	1270087	2L_1270087_SNP [dm3] 2L_1270087_SNP [dm6]	C	G	5.105e^-4	0.989	INTRON robo3
2R	15702342	2R_15702342_SNP [dm3] 2R_19814837_SNP [dm6]	A	G	5.114e^-4	0.989	UPSTREAM Obp56h INTERGENIC	regulatory region REDfly_CRMs
2L	9496975	2L_9496975_SNP [dm3] 2L_9496975_SNP [dm6]	T	C	5.141e^-4	0.989	INTRON CG33298	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	3631021	2L_3631021_SNP [dm3] 2L_3631021_SNP [dm6]	T	G	5.153e^-4	0.989	INTRON for	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17977319	2R_17977319_SNP [dm3] 2R_22089814_SNP [dm6]	C	T	5.171e^-4	0.989	UTR_3_PRIME CG43393 DOWNSTREAM CG44163
3L	3304553	3L_3304553_SNP [dm3] 3L_3304553_SNP [dm6]	C	A	5.172e^-4	0.989	INTRON ZnT63C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	4636883	X_4636883_SNP [dm3] X_4742850_SNP [dm6]	A	G	5.194e^-4	0.989	INTERGENIC
2R	7414501	2R_7414501_SNP [dm3] 2R_11526996_SNP [dm6]	C	T	5.200e^-4	0.989	SYNONYMOUS_CODING en	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18968313	2R_18968313_SNP [dm3] 2R_23080790_SNP [dm6]	G	T	5.205e^-4	0.989	NON_SYNONYMOUS_CODING Gr59a	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
3L	1604690	3L_1604690_SNP [dm3] 3L_1604690_SNP [dm6]	T	G	5.209e^-4	0.989	UTR_5_PRIME CG33791 UTR_3_PRIME CG18170 UPSTREAM CG33791
X	16583376	X_16583376_SNP [dm3] X_16689343_SNP [dm6]	C	T	5.219e^-4	0.989	INTRON Sep4
2R	9954663	2R_9954663_SNP [dm3] 2R_14067158_SNP [dm6]	A	T	5.240e^-4	0.989	INTRON Prosap
X	22182756	X_22182756_DEL [dm3] X_22780920_DEL [dm6]	TAACG	T	5.265e^-4	0.989	INTRON CR44997
X	2262701	X_2262701_SNP [dm3] X_2368668_SNP [dm6]	C	G	5.290e^-4	0.989	INTRON PsGEF	TF binding site mE1_TFBS_chinmo
3R	15302221	3R_15302221_SNP [dm3] 3R_19476499_SNP [dm6]	C	T	5.296e^-4	0.989	UPSTREAM Dys INTRON Dys	TF binding site mE1_TFBS_inv
2L	16526208	2L_16526208_SNP [dm3] 2L_16526208_SNP [dm6]	G	A	5.301e^-4	0.989	INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	7331157	3L_7331157_SNP [dm3] 3L_7338057_SNP [dm6]	A	C	5.310e^-4	0.989	NON_SYNONYMOUS_CODING eco	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	20258853	X_20258853_SNP [dm3] X_20387826_SNP [dm6]	G	A	5.314e^-4	0.989	INTERGENIC
3R	19705316	3R_19705316_SNP [dm3] 3R_23879594_SNP [dm6]	C	T	5.318e^-4	0.989	INTRON Pli	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	11912461	2L_11912461_SNP [dm3] 2L_11912461_SNP [dm6]	A	C	5.323e^-4	0.989	INTRON Pde1c
2L	2783086	2L_2783086_SNP [dm3] 2L_2783086_SNP [dm6]	G	A	5.336e^-4	0.989	SYNONYMOUS_CODING Syt1 UTR_3_PRIME Syt1
2L	7540568	2L_7540568_DEL [dm3] 2L_7540568_DEL [dm6]	GT	G	5.351e^-4	0.989	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9070758	2L_9070758_SNP [dm3] 2L_9070758_SNP [dm6]	G	A	5.353e^-4	0.989	UPSTREAM CR44483 INTRON CG31708
2R	18861951	2R_18861951_SNP [dm3] 2R_22974428_SNP [dm6]	T	A	5.355e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	8654154	3L_8654154_SNP [dm3] 3L_8661054_SNP [dm6]	C	T	5.358e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2107223	3L_2107223_SNP [dm3] 3L_2107223_SNP [dm6]	T	A	5.364e^-4	0.989	INTRON sls	TF binding site BDTNP1_TFBS_dl
3R	26090266	3R_26090266_SNP [dm3] 3R_30264544_SNP [dm6]	G	A	5.365e^-4	0.989	INTERGENIC
3L	3306003	3L_3306003_SNP [dm3] 3L_3306003_SNP [dm6]	G	A	5.374e^-4	0.989	INTRON ZnT63C
X	13233544	X_13233544_SNP [dm3] X_13339511_SNP [dm6]	T	C	5.393e^-4	0.989	SYNONYMOUS_CODING CG15747	TF binding site mE1_TFBS_sens
3R	25399430	3R_25399430_SNP [dm3] 3R_29573708_SNP [dm6]	G	A	5.419e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24880829	3R_24880829_SNP [dm3] 3R_29055107_SNP [dm6]	G	T	5.424e^-4	0.989	NON_SYNONYMOUS_CODING CG11843 UPSTREAM Sirt7	TF binding site BDTNP1_TFBS_dl
2L	4009881	2L_4009881_DEL [dm3] 2L_4009881_DEL [dm6]	CAAGC	AT	5.450e^-4	0.989	DOWNSTREAM CG43774 INTERGENIC
X	22184258	X_22184258_SNP [dm3] X_22782422_SNP [dm6]	C	T	5.450e^-4	0.989	INTRON CR44997
X	8713435	X_8713435_SNP [dm3] X_8819402_SNP [dm6]	C	T	5.450e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	10946460	2L_10946460_SNP [dm3] 2L_10946460_SNP [dm6]	T	G	5.453e^-4	0.989	INTRON dpr2
X	16529508	X_16529508_SNP [dm3] X_16635475_SNP [dm6]	A	G	5.460e^-4	0.989	INTRON Rok
3R	5873547	3R_5873547_SNP [dm3] 3R_10047825_SNP [dm6]	C	A	5.460e^-4	0.989	DOWNSTREAM mtTFB2 INTRON CG12811	TF binding site mE1_TFBS_sens
X	20228672	X_20228672_SNP [dm3] X_20357645_SNP [dm6]	C	T	5.475e^-4	0.989	INTERGENIC
3L	3303332	3L_3303332_SNP [dm3] 3L_3303332_SNP [dm6]	A	C	5.484e^-4	0.989	UPSTREAM CG14968 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	3303352	3L_3303352_SNP [dm3] 3L_3303352_SNP [dm6]	C	T	5.484e^-4	0.989	UPSTREAM CG14968 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	3303393	3L_3303393_SNP [dm3] 3L_3303393_SNP [dm6]	G	C	5.484e^-4	0.989	UPSTREAM CG14968 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2R	10891121	2R_10891121_SNP [dm3] 2R_15003616_SNP [dm6]	A	G	5.485e^-4	0.989	INTERGENIC
3L	9716347	3L_9716347_SNP [dm3] 3L_9723247_SNP [dm6]	T	G	5.496e^-4	0.989	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	5265505	2L_5265505_SNP [dm3] 2L_5265505_SNP [dm6]	A	C	5.511e^-4	0.989	SYNONYMOUS_CODING Cyp4ac1 UPSTREAM Cyp4ac2 INTRON tkv	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	5817318	3R_5817318_SNP [dm3] 3R_9991596_SNP [dm6]	T	C	5.511e^-4	0.989	UTR_3_PRIME Glut4EF
X	20746495	X_20746495_SNP [dm3] X_20875468_SNP [dm6]	G	A	5.512e^-4	0.989	DOWNSTREAM CR11235 INTRON shakB
2L	5626897	2L_5626897_SNP [dm3] 2L_5626897_SNP [dm6]	A	C	5.514e^-4	0.989	UTR_3_PRIME CG31646	TF binding site BDTNP1_TFBS_twi
2L	13114940	2L_13114940_SNP [dm3] 2L_13114940_SNP [dm6]	G	A	5.514e^-4	0.989	INTERGENIC
X	12778069	X_12778069_SNP [dm3] X_12884036_SNP [dm6]	C	T	5.522e^-4	0.989	INTRON Pde9
2L	4264255	2L_4264255_SNP [dm3] 2L_4264255_SNP [dm6]	G	A	5.532e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	16499501	3R_16499501_SNP [dm3] 3R_20673779_SNP [dm6]	C	T	5.533e^-4	0.989	DOWNSTREAM Cpr92F INTERGENIC
2R	18568352	2R_18568352_SNP [dm3] 2R_22680847_SNP [dm6]	C	T	5.536e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
2L	9526211	2L_9526211_SNP [dm3] 2L_9526211_SNP [dm6]	A	G	5.541e^-4	0.989	INTRON Oatp30B	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	15275550	3L_15275550_SNP [dm3] 3L_15282450_SNP [dm6]	C	T	5.545e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	7102226	2L_7102226_SNP [dm3] 2L_7102226_SNP [dm6]	T	C	5.551e^-4	0.989	INTRON Pvf3
X	16250286	X_16250286_SNP [dm3] X_16356253_SNP [dm6]	T	C	5.574e^-4	0.989	UTR_3_PRIME sl DOWNSTREAM U2af50	TF binding site BDTNP1_TFBS_dl
3R	25078480	3R_25078480_SNP [dm3] 3R_29252758_SNP [dm6]	G	A	5.576e^-4	0.989	SYNONYMOUS_CODING stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_Mad mE1_TFBS_HSA mE1_TFBS_sens
2L	11148117	2L_11148117_SNP [dm3] 2L_11148117_SNP [dm6]	A	C	5.578e^-4	0.989	INTRON Gyc32E
3L	17327289	3L_17327289_SNP [dm3] 3L_17334189_SNP [dm6]	G	A	5.590e^-4	0.989	EXON CR44563	TF binding site mE1_TFBS_HSA
3R	19915492	3R_19915492_SNP [dm3] 3R_24089770_SNP [dm6]	A	C	5.592e^-4	0.989	INTRON 4EHP
2R	11446958	2R_11446958_SNP [dm3] 2R_15559453_SNP [dm6]	G	T	5.644e^-4	0.989	UTR_5_PRIME CG12963 UPSTREAM CG12963 INTRON CG12963	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2937848	2R_2937848_SNP [dm3] 2R_7050343_SNP [dm6]	T	G	5.644e^-4	0.989	INTRON lbm	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	16489438	3L_16489438_SNP [dm3] 3L_16496338_SNP [dm6]	C	T	5.651e^-4	0.989	UPSTREAM CG42514 INTRON CG33158 & 1 other
3L	3303091	3L_3303091_SNP [dm3] 3L_3303091_SNP [dm6]	G	A	5.667e^-4	0.989	UTR_5_PRIME CG14968 UPSTREAM CG14968 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	4197428	2L_4197428_SNP [dm3] 2L_4197428_SNP [dm6]	A	T	5.669e^-4	0.989	UPSTREAM CG3714 DOWNSTREAM ft INTRON CG3714	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	10910288	3R_10910288_SNP [dm3] 3R_15084566_SNP [dm6]	T	C	5.683e^-4	0.989	INTRON CG6966
3L	10591960	3L_10591960_SNP [dm3] 3L_10598860_SNP [dm6]	T	C	5.712e^-4	0.989	INTERGENIC
3L	2194479	3L_2194479_SNP [dm3] 3L_2194479_SNP [dm6]	C	A	5.712e^-4	0.989	INTERGENIC
3R	16498756	3R_16498756_SNP [dm3] 3R_20673034_SNP [dm6]	G	T	5.732e^-4	0.989	DOWNSTREAM Cpr92F INTERGENIC
2R	14887982	2R_14887982_SNP [dm3] 2R_19000477_SNP [dm6]	A	T	5.733e^-4	0.989	INTRON tn
2L	9419310	2L_9419310_INS [dm3] 2L_9419310_INS [dm6]	T	TGTAAAAATT	5.735e^-4	0.989	INTRON Mco1
2R	12607148	2R_12607148_SNP [dm3] 2R_16719643_SNP [dm6]	G	A	5.738e^-4	0.989	INTRON CG30463	TF binding site mE1_TFBS_sbb
2L	8977892	2L_8977892_SNP [dm3] 2L_8977892_SNP [dm6]	C	T	5.748e^-4	0.989	UTR_3_PRIME CG13101 DOWNSTREAM CG13101
3L	13120453	3L_13120453_SNP [dm3] 3L_13127353_SNP [dm6]	G	A	5.784e^-4	0.989	INTERGENIC
2R	2954723	2R_2954723_SNP [dm3] 2R_7067218_SNP [dm6]	G	T	5.785e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_cad
3R	24573823	3R_24573823_SNP [dm3] 3R_28748101_SNP [dm6]	T	A	5.790e^-4	0.989	DOWNSTREAM CG10000 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18581182	3L_18581182_DEL [dm3] 3L_18588082_DEL [dm6]	GA	G	5.805e^-4	0.989	UPSTREAM CG7271 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5265511	2L_5265511_SNP [dm3] 2L_5265511_SNP [dm6]	A	G	5.808e^-4	0.989	SYNONYMOUS_CODING Cyp4ac1 UPSTREAM Cyp4ac2 INTRON tkv	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8654755	3L_8654755_SNP [dm3] 3L_8661655_SNP [dm6]	T	C	5.811e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	14058670	3R_14058670_SNP [dm3] 3R_18232948_SNP [dm6]	G	A	5.821e^-4	0.989	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	14060788	3R_14060788_SNP [dm3] 3R_18235066_SNP [dm6]	C	T	5.821e^-4	0.989	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	22072598	X_22072598_SNP [dm3] X_22670762_SNP [dm6]	A	G	5.829e^-4	0.989	INTRON CR44997
3L	8849142	3L_8849142_SNP [dm3] 3L_8856042_SNP [dm6]	G	A	5.832e^-4	0.989	INTRON dally
X	6688064	X_6688064_SNP [dm3] X_6794031_SNP [dm6]	A	T	5.853e^-4	0.989	INTRON C3G	TF binding site BDTNP1_TFBS_twi
2L	4208073	2L_4208073_SNP [dm3] 2L_4208073_SNP [dm6]	G	A	5.869e^-4	0.989	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14607112	2R_14607112_DEL [dm3] 2R_18719607_DEL [dm6]	AT	A	5.879e^-4	0.989	UPSTREAM mir-4982 INTRON Hs3st-A
2L	6855623	2L_6855623_SNP [dm3] 2L_6855623_SNP [dm6]	G	A	5.891e^-4	0.989	SYNONYMOUS_CODING l_2_k09022
3L	1679434	3L_1679434_SNP [dm3] 3L_1679434_SNP [dm6]	T	G	5.900e^-4	0.989	INTRON CG7991
2L	14960324	2L_14960324_SNP [dm3] 2L_14960324_SNP [dm6]	G	A	5.904e^-4	0.989	INTRON CG42313
3L	4292912	3L_4292912_SNP [dm3] 3L_4292912_SNP [dm6]	G	C	5.910e^-4	0.989	SYNONYMOUS_CODING CG1319 UPSTREAM CG15012	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	2921974	2R_2921974_SNP [dm3] 2R_7034469_SNP [dm6]	A	G	5.929e^-4	0.989	SPLICE_SITE_REGION Tsp42Eh UPSTREAM Tsp42Ei INTRON Tsp42Eh
2L	2665940	2L_2665940_SNP [dm3] 2L_2665940_SNP [dm6]	T	C	5.935e^-4	0.989	SYNONYMOUS_CODING CG9879
2R	5549506	2R_5549506_SNP [dm3] 2R_9662001_SNP [dm6]	G	T	5.936e^-4	0.989	DOWNSTREAM tRNA:M3:46A INTRON Mmp2
2L	16362395	2L_16362395_DEL [dm3] 2L_16362395_DEL [dm6]	ACTAAC	A	5.936e^-4	0.989	INTERGENIC
2L	16362402	2L_16362402_SNP [dm3] 2L_16362402_SNP [dm6]	A	T	5.936e^-4	0.989	INTERGENIC
3L	18133204	3L_18133204_SNP [dm3] 3L_18140104_SNP [dm6]	G	C	5.939e^-4	0.989	INTRON gk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	5448864	X_5448864_SNP [dm3] X_5554831_SNP [dm6]	C	A	5.959e^-4	0.989	INTRON Vsx2	TF binding site mE1_TFBS_cnc
3R	20248321	3R_20248321_SNP [dm3] 3R_24422599_SNP [dm6]	C	G	5.970e^-4	0.989	INTRON nAChRalpha1
3R	23015179	3R_23015179_SNP [dm3] 3R_27189457_SNP [dm6]	A	G	5.976e^-4	0.989	INTRON Ser	regulatory region REDfly_CRMs
3R	3474496	3R_3474496_SNP [dm3] 3R_7648774_SNP [dm6]	A	T	5.982e^-4	0.989	INTERGENIC
3L	1557059	3L_1557059_SNP [dm3] 3L_1557059_SNP [dm6]	A	G	5.990e^-4	0.989	SYNONYMOUS_CODING CG12099	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9082643	2L_9082643_SNP [dm3] 2L_9082643_SNP [dm6]	T	C	6.000e^-4	0.989	INTERGENIC
3R	26037380	3R_26037380_SNP [dm3] 3R_30211658_SNP [dm6]	C	T	6.009e^-4	0.989	UPSTREAM CecA2 DOWNSTREAM CecA1 INTRON Cec-Psi1
2L	13732188	2L_13732188_SNP [dm3] 2L_13732188_SNP [dm6]	A	G	6.027e^-4	0.989	INTERGENIC
X	6690469	X_6690469_DEL [dm3] X_6796436_DEL [dm6]	TAAT	T	6.039e^-4	0.989	UPSTREAM C3G INTRON C3G
2R	13793013	2R_13793013_SNP [dm3] 2R_17905508_SNP [dm6]	G	A	6.043e^-4	0.989	INTRON Elk
2L	1839213	2L_1839213_SNP [dm3] 2L_1839213_SNP [dm6]	A	G	6.052e^-4	0.989	DOWNSTREAM CR44073 & 1 other INTRON wry
2L	16537366	2L_16537366_SNP [dm3] 2L_16537366_SNP [dm6]	A	T	6.059e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_inv
3R	22877820	3R_22877820_SNP [dm3] 3R_27052098_SNP [dm6]	C	A	6.072e^-4	0.989	INTRON RYa-R
3R	22877827	3R_22877827_SNP [dm3] 3R_27052105_SNP [dm6]	T	G	6.072e^-4	0.989	INTRON RYa-R
X	6688185	X_6688185_SNP [dm3] X_6794152_SNP [dm6]	G	T	6.075e^-4	0.989	INTRON C3G	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25360329	3R_25360329_SNP [dm3] 3R_29534607_SNP [dm6]	G	T	6.083e^-4	0.989	UPSTREAM CR43613 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	2656061	2L_2656061_SNP [dm3] 2L_2656061_SNP [dm6]	T	C	6.084e^-4	0.989	SYNONYMOUS_CODING Prosbeta4R2 DOWNSTREAM Or23a
2L	3932174	2L_3932174_SNP [dm3] 2L_3932174_SNP [dm6]	T	G	6.086e^-4	0.989	INTRON fred
3R	15796207	3R_15796207_SNP [dm3] 3R_19970485_SNP [dm6]	C	A	6.088e^-4	0.989	INTRON Hs6st
X	22209862	X_22209862_SNP [dm3] X_22808026_SNP [dm6]	G	T	6.095e^-4	0.989	UPSTREAM CR45464 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21692893	3R_21692893_SNP [dm3] 3R_25867171_SNP [dm6]	G	T	6.103e^-4	0.989	UTR_5_PRIME CG5890
3R	5868562	3R_5868562_SNP [dm3] 3R_10042840_SNP [dm6]	T	C	6.109e^-4	0.989	UTR_5_PRIME Mical UPSTREAM CG3909 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	5626180	2L_5626180_SNP [dm3] 2L_5626180_SNP [dm6]	C	T	6.114e^-4	0.989	DOWNSTREAM CG31646 INTERGENIC
X	13751167	X_13751167_SNP [dm3] X_13857134_SNP [dm6]	G	A	6.116e^-4	0.989	SYNONYMOUS_CODING mamo DOWNSTREAM mamo
2R	16350220	2R_16350220_DEL [dm3] 2R_20462715_DEL [dm6]	CTAG	C	6.128e^-4	0.989	INTRON CG12484
3L	22143483	3L_22143483_SNP [dm3] 3L_22150383_SNP [dm6]	G	A	6.168e^-4	0.989	INTRON olf413
3R	26037375	3R_26037375_SNP [dm3] 3R_30211653_SNP [dm6]	A	G	6.171e^-4	0.989	UPSTREAM CecA2 DOWNSTREAM CecA1 INTRON Cec-Psi1
2R	16350185	2R_16350185_DEL [dm3] 2R_20462680_DEL [dm6]	CAGCACAGTTTC...	C	6.191e^-4	0.989	INTRON CG12484
3L	5172756	3L_5172756_SNP [dm3] 3L_5179656_SNP [dm6]	G	A	6.192e^-4	0.989	INTRON shep
3L	5174815	3L_5174815_SNP [dm3] 3L_5181715_SNP [dm6]	A	G	6.192e^-4	0.989	INTRON shep
3R	23861505	3R_23861505_SNP [dm3] 3R_28035783_SNP [dm6]	G	T	6.211e^-4	0.989	INTRON CG34362
2L	6280217	2L_6280217_SNP [dm3] 2L_6280217_SNP [dm6]	C	A	6.230e^-4	0.989	INTRON Ddr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	22309617	3R_22309617_SNP [dm3] 3R_26483895_SNP [dm6]	G	A	6.233e^-4	0.989	INTRON plum
3R	18693813	3R_18693813_SNP [dm3] 3R_22868091_SNP [dm6]	A	C	6.242e^-4	0.989	INTERGENIC
2R	7047188	2R_7047188_SNP [dm3] 2R_11159683_SNP [dm6]	A	T	6.243e^-4	0.989	INTRON CG13229 & 1 other	TF binding site BDTNP1_TFBS_twi
2L	2908254	2L_2908254_INS [dm3] 2L_2908254_INS [dm6]	C	CGCC	6.245e^-4	0.989	INTRON lilli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2L	3789600	2L_3789600_SNP [dm3] 2L_3789600_SNP [dm6]	A	G	6.247e^-4	0.989	UPSTREAM CG3921 INTRON CG3921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	26773115	3R_26773115_SNP [dm3] 3R_30947393_SNP [dm6]	T	C	6.259e^-4	0.989	INTERGENIC
3R	11323409	3R_11323409_SNP [dm3] 3R_15497687_SNP [dm6]	T	G	6.276e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_HSA
X	6448362	X_6448362_SNP [dm3] X_6554329_SNP [dm6]	G	A	6.278e^-4	0.989	SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	6512504	3R_6512504_SNP [dm3] 3R_10686782_SNP [dm6]	C	T	6.279e^-4	0.989	UPSTREAM Skeletor INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	6719062	3L_6719062_DEL [dm3] 3L_6725962_DEL [dm6]	TGA	T	6.280e^-4	0.989	UPSTREAM CR44523 INTERGENIC
2L	6937089	2L_6937089_SNP [dm3] 2L_6937089_SNP [dm6]	T	C	6.289e^-4	0.989	INTRON CG18304
2L	6937092	2L_6937092_SNP [dm3] 2L_6937092_SNP [dm6]	C	T	6.289e^-4	0.989	INTRON CG18304
2L	6937098	2L_6937098_SNP [dm3] 2L_6937098_SNP [dm6]	A	G	6.289e^-4	0.989	INTRON CG18304
2L	6240887	2L_6240887_SNP [dm3] 2L_6240887_SNP [dm6]	C	A	6.293e^-4	0.989	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	3306005	3L_3306005_INS [dm3] 3L_3306005_INS [dm6]	A	AG	6.299e^-4	0.989	INTRON ZnT63C
2L	6787659	2L_6787659_SNP [dm3] 2L_6787659_SNP [dm6]	T	C	6.302e^-4	0.989	UPSTREAM nrv1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	22180874	X_22180874_SNP [dm3] X_22779038_SNP [dm6]	A	G	6.305e^-4	0.989	INTRON CR44997	TF binding site BDTNP1_TFBS_twi
2L	9894967	2L_9894967_SNP [dm3] 2L_9894967_SNP [dm6]	G	A	6.307e^-4	0.989	UPSTREAM snoRNA:U14:30Eb & 4 others INTRON Uhg2 EXON Uhg2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	6622403	3L_6622403_SNP [dm3] 3L_6629303_SNP [dm6]	G	C	6.312e^-4	0.989	INTRON GluRIA
3L	6622420	3L_6622420_SNP [dm3] 3L_6629320_SNP [dm6]	T	G	6.312e^-4	0.989	INTRON GluRIA
3L	6622433	3L_6622433_SNP [dm3] 3L_6629333_SNP [dm6]	G	A	6.312e^-4	0.989	INTRON GluRIA
2R	4217680	2R_4217680_SNP [dm3] 2R_8330175_SNP [dm6]	C	G	6.314e^-4	0.989	INTRON pdm3
2R	18753801	2R_18753801_SNP [dm3] 2R_22866278_SNP [dm6]	T	A	6.315e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5273530	2R_5273530_INS [dm3] 2R_9386025_INS [dm6]	C	CGC	6.323e^-4	0.989	INTRON CG13954
2R	5273552	2R_5273552_SNP [dm3] 2R_9386047_SNP [dm6]	G	T	6.323e^-4	0.989	INTRON CG13954
2R	5273555	2R_5273555_SNP [dm3] 2R_9386050_SNP [dm6]	T	C	6.323e^-4	0.989	INTRON CG13954
2L	13213727	2L_13213727_SNP [dm3] 2L_13213727_SNP [dm6]	G	T	6.330e^-4	0.989	SYNONYMOUS_CODING kek4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	18024635	3L_18024635_SNP [dm3] 3L_18031535_SNP [dm6]	G	A	6.332e^-4	0.989	INTRON Eip75B
3L	14116731	3L_14116731_SNP [dm3] 3L_14123631_SNP [dm6]	C	T	6.347e^-4	0.989	INTRON Sox21b
3R	8001537	3R_8001537_SNP [dm3] 3R_12175815_SNP [dm6]	A	G	6.347e^-4	0.989	INTERGENIC
3L	3245857	3L_3245857_SNP [dm3] 3L_3245857_SNP [dm6]	A	G	6.348e^-4	0.989	DOWNSTREAM CR45424 INTERGENIC
3L	10732088	3L_10732088_SNP [dm3] 3L_10738988_SNP [dm6]	A	C	6.376e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	5804794	3R_5804794_SNP [dm3] 3R_9979072_SNP [dm6]	C	A	6.378e^-4	0.989	INTRON Glut4EF	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	9854442	2R_9854442_SNP [dm3] 2R_13966937_SNP [dm6]	C	T	6.402e^-4	0.989	SYNONYMOUS_CODING Cp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3L	3758291	3L_3758291_SNP [dm3] 3L_3758291_SNP [dm6]	G	T	6.403e^-4	0.989	INTRON CG32264	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	19486914	X_19486914_SNP [dm3] X_19592881_SNP [dm6]	C	T	6.404e^-4	0.989	SYNONYMOUS_CODING CG14205	TF binding site mE1_TFBS_sens
2L	9824945	2L_9824945_SNP [dm3] 2L_9824945_SNP [dm6]	A	G	6.405e^-4	0.989	INTRON nAChRalpha6
2L	6535592	2L_6535592_SNP [dm3] 2L_6535592_SNP [dm6]	C	T	6.408e^-4	0.989	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	1839185	2L_1839185_SNP [dm3] 2L_1839185_SNP [dm6]	A	C	6.418e^-4	0.989	DOWNSTREAM CR44073 & 1 other INTRON wry
2L	6787882	2L_6787882_SNP [dm3] 2L_6787882_SNP [dm6]	A	G	6.426e^-4	0.989	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	10979804	2L_10979804_SNP [dm3] 2L_10979804_SNP [dm6]	T	A	6.429e^-4	0.989	INTRON SCAR	TF binding site mE1_TFBS_HSA
X	21042332	X_21042332_SNP [dm3] X_21171305_SNP [dm6]	A	G	6.430e^-4	0.989	INTERGENIC	transposable element FlyBase
2L	4689358	2L_4689358_SNP [dm3] 2L_4689358_SNP [dm6]	A	T	6.438e^-4	0.989	NON_SYNONYMOUS_CODING CG3251 DOWNSTREAM Elba3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2L	15038954	2L_15038954_SNP [dm3] 2L_15038954_SNP [dm6]	C	T	6.472e^-4	0.989	UPSTREAM Su_H_ & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	15038969	2L_15038969_SNP [dm3] 2L_15038969_SNP [dm6]	A	C	6.472e^-4	0.989	UPSTREAM Su_H_ & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	6947146	2R_6947146_SNP [dm3] 2R_11059641_SNP [dm6]	T	C	6.474e^-4	0.989	INTRON luna
3R	22000986	3R_22000986_SNP [dm3] 3R_26175264_SNP [dm6]	A	G	6.483e^-4	0.989	INTRON CG31323
2L	4689627	2L_4689627_SNP [dm3] 2L_4689627_SNP [dm6]	A	G	6.500e^-4	0.989	SYNONYMOUS_CODING CG3251 DOWNSTREAM Elba3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	19299337	3R_19299337_SNP [dm3] 3R_23473615_SNP [dm6]	A	T	6.506e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	2501233	X_2501233_SNP [dm3] X_2607200_SNP [dm6]	T	C	6.506e^-4	0.989	DOWNSTREAM Zw10 INTRON Bzd	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	9505948	3L_9505948_SNP [dm3] 3L_9512848_SNP [dm6]	C	G	6.510e^-4	0.989	SYNONYMOUS_CODING CG33702 UPSTREAM CG33703 DOWNSTREAM CR33701
3L	2193921	3L_2193921_SNP [dm3] 3L_2193921_SNP [dm6]	C	T	6.515e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_cad
3L	11900985	3L_11900985_SNP [dm3] 3L_11907885_SNP [dm6]	G	T	6.515e^-4	0.989	INTRON CG44837
3R	22476569	3R_22476569_SNP [dm3] 3R_26650847_SNP [dm6]	A	T	6.537e^-4	0.989	INTRON beat-VII
3R	5143433	3R_5143433_SNP [dm3] 3R_9317711_SNP [dm6]	C	T	6.537e^-4	0.989	INTRON CG8861
2L	12967710	2L_12967710_SNP [dm3] 2L_12967710_SNP [dm6]	A	G	6.540e^-4	0.989	SYNONYMOUS_CODING CG16800
3R	7739629	3R_7739629_SNP [dm3] 3R_11913907_SNP [dm6]	C	T	6.558e^-4	0.989	INTRON Cad87A
X	16643273	X_16643273_INS [dm3] X_16749240_INS [dm6]	A	ATA	6.559e^-4	0.989	INTRON CG9634	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	2753707	X_2753707_INS [dm3] X_2859674_INS [dm6]	G	TCT	6.563e^-4	0.989	INTRON kirre
3L	11848606	3L_11848606_SNP [dm3] 3L_11855506_SNP [dm6]	G	A	6.584e^-4	0.989	INTRON CG44837
3R	26773047	3R_26773047_SNP [dm3] 3R_30947325_SNP [dm6]	G	C	6.595e^-4	0.989	INTERGENIC
3R	19277946	3R_19277946_SNP [dm3] 3R_23452224_SNP [dm6]	A	T	6.611e^-4	0.989	INTRON CG4374	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15932019	3R_15932019_SNP [dm3] 3R_20106297_SNP [dm6]	T	G	6.611e^-4	0.989	DOWNSTREAM CG31206 INTERGENIC
2R	17113027	2R_17113027_SNP [dm3] 2R_21225522_SNP [dm6]	T	C	6.625e^-4	0.989	INTRON ASPP
2L	4343247	2L_4343247_SNP [dm3] 2L_4343247_SNP [dm6]	G	A	6.632e^-4	0.989	SYNONYMOUS_CODING Atet UPSTREAM mir-1005	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1027637	2L_1027637_DEL [dm3] 2L_1027637_DEL [dm6]	TGGGAAGGGGCACTT...	T	6.658e^-4	0.989	UPSTREAM CG4375 INTRON IA-2
3L	7411608	3L_7411608_SNP [dm3] 3L_7418508_SNP [dm6]	T	G	6.669e^-4	0.989	INTERGENIC
3L	18133699	3L_18133699_SNP [dm3] 3L_18140599_SNP [dm6]	T	C	6.688e^-4	0.989	INTRON gk	TF binding site BDTNP1_TFBS_dl
3L	18133902	3L_18133902_SNP [dm3] 3L_18140802_SNP [dm6]	G	C	6.688e^-4	0.989	INTRON gk
2L	10205365	2L_10205365_SNP [dm3] 2L_10205365_SNP [dm6]	A	T	6.699e^-4	0.989	UTR_3_PRIME CG5734	TF binding site mE1_TFBS_cad
X	11843593	X_11843593_SNP [dm3] X_11949560_SNP [dm6]	G	C	6.711e^-4	0.989	INTRON cac	TF binding site mE1_TFBS_HSA
3R	14507646	3R_14507646_SNP [dm3] 3R_18681924_SNP [dm6]	A	C	6.740e^-4	0.989	INTRON CG7708
2R	17966749	2R_17966749_SNP [dm3] 2R_22079244_SNP [dm6]	A	G	6.749e^-4	0.989	UTR_3_PRIME GlcT-1 UPSTREAM Synj
2L	2665946	2L_2665946_SNP [dm3] 2L_2665946_SNP [dm6]	A	T	6.752e^-4	0.989	SYNONYMOUS_CODING CG9879
2L	4657939	2L_4657939_SNP [dm3] 2L_4657939_SNP [dm6]	C	T	6.756e^-4	0.989	INTERGENIC
2L	4657940	2L_4657940_SNP [dm3] 2L_4657940_SNP [dm6]	A	G	6.756e^-4	0.989	INTERGENIC
3R	14907243	3R_14907243_SNP [dm3] 3R_19081521_SNP [dm6]	T	C	6.781e^-4	0.989	INTRON cdi
2L	11355230	2L_11355230_SNP [dm3] 2L_11355230_SNP [dm6]	A	T	6.807e^-4	0.989	DOWNSTREAM CR44586 INTERGENIC	regulatory region REDfly_CRMs
2R	19102584	2R_19102584_SNP [dm3] 2R_23215061_SNP [dm6]	G	A	6.809e^-4	0.989	INTERGENIC
3R	24453452	3R_24453452_SNP [dm3] 3R_28627730_SNP [dm6]	T	A	6.813e^-4	0.989	INTRON CG10011
3R	5870974	3R_5870974_SNP [dm3] 3R_10045252_SNP [dm6]	G	A	6.840e^-4	0.989	UPSTREAM mtTFB2 DOWNSTREAM CG3909 INTRON CG11722	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	14907240	3R_14907240_SNP [dm3] 3R_19081518_SNP [dm6]	C	A	6.844e^-4	0.989	INTRON cdi
X	20727953	X_20727953_DEL [dm3] X_20856926_DEL [dm6]	ACG	A	6.844e^-4	0.989	INTRON shakB	transposable element FlyBase
X	20727972	X_20727972_DEL [dm3] X_20856945_DEL [dm6]	AGACG	A	6.844e^-4	0.989	INTRON shakB	transposable element FlyBase
X	20727979	X_20727979_MNP [dm3] X_20856952_MNP [dm6]	CAG	GTT	6.844e^-4	0.989	INTRON shakB	transposable element FlyBase
X	20727984	X_20727984_SNP [dm3] X_20856957_SNP [dm6]	T	G	6.844e^-4	0.989	INTRON shakB	transposable element FlyBase
2R	9606531	2R_9606531_SNP [dm3] 2R_13719026_SNP [dm6]	T	A	6.851e^-4	0.989	INTRON fas
X	4467423	X_4467423_DEL [dm3] X_4573390_DEL [dm6]	GAACTG	G	6.868e^-4	0.989	INTRON CR32773
2R	14050339	2R_14050339_SNP [dm3] 2R_18162834_SNP [dm6]	T	C	6.876e^-4	0.989	INTRON CG10915	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15043192	2R_15043192_SNP [dm3] 2R_19155687_SNP [dm6]	C	T	6.880e^-4	0.989	SYNONYMOUS_CODING ena INTRON ena	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	22047349	X_22047349_SNP [dm3] X_22645513_SNP [dm6]	T	C	6.897e^-4	0.989	INTERGENIC
3L	7730451	3L_7730451_SNP [dm3] 3L_7737351_SNP [dm6]	G	A	6.913e^-4	0.989	INTRON CG32373 & 1 other
2L	9070721	2L_9070721_SNP [dm3] 2L_9070721_SNP [dm6]	T	A	6.914e^-4	0.989	UPSTREAM CR44483 INTRON CG31708
2L	9070723	2L_9070723_SNP [dm3] 2L_9070723_SNP [dm6]	C	T	6.914e^-4	0.989	UPSTREAM CR44483 INTRON CG31708
X	7970720	X_7970720_SNP [dm3] X_8076687_SNP [dm6]	A	G	6.914e^-4	0.989	SYNONYMOUS_CODING CG1571	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5715553	2L_5715553_SNP [dm3] 2L_5715553_SNP [dm6]	C	T	6.928e^-4	0.989	NON_SYNONYMOUS_CODING CG14007 UPSTREAM CR44818
2L	7493558	2L_7493558_SNP [dm3] 2L_7493558_SNP [dm6]	G	A	6.931e^-4	0.989	INTRON Ziz
X	656288	X_656288_SNP [dm3] X_762255_SNP [dm6]	G	T	6.969e^-4	0.989	DOWNSTREAM RpL22 & 3 others EXON CR44965
X	626476	X_626476_SNP [dm3] X_732443_SNP [dm6]	A	T	6.981e^-4	0.989	INTRON sdk
2L	9080242	2L_9080242_SNP [dm3] 2L_9080242_SNP [dm6]	C	T	6.990e^-4	0.989	INTERGENIC
2L	14893919	2L_14893919_SNP [dm3] 2L_14893919_SNP [dm6]	G	A	6.992e^-4	0.989	INTERGENIC
2L	14893940	2L_14893940_SNP [dm3] 2L_14893940_SNP [dm6]	G	A	6.992e^-4	0.989	INTERGENIC
2L	14893947	2L_14893947_SNP [dm3] 2L_14893947_SNP [dm6]	C	T	6.992e^-4	0.989	INTERGENIC
2L	14893948	2L_14893948_SNP [dm3] 2L_14893948_SNP [dm6]	T	C	6.992e^-4	0.989	INTERGENIC
X	661498	X_661498_SNP [dm3] X_767465_SNP [dm6]	A	G	7.010e^-4	0.989	INTERGENIC
X	661528	X_661528_SNP [dm3] X_767495_SNP [dm6]	T	G	7.010e^-4	0.989	INTERGENIC
X	661698	X_661698_SNP [dm3] X_767665_SNP [dm6]	T	G	7.010e^-4	0.989	INTERGENIC
X	6429466	X_6429466_SNP [dm3] X_6535433_SNP [dm6]	T	C	7.015e^-4	0.989	INTRON dx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	3214129	3L_3214129_SNP [dm3] 3L_3214129_SNP [dm6]	C	A	7.020e^-4	0.989	SYNONYMOUS_CODING CG14967	TF binding site mE1_TFBS_cad
2L	5965903	2L_5965903_SNP [dm3] 2L_5965903_SNP [dm6]	G	A	7.027e^-4	0.989	SYNONYMOUS_CODING CG13992 UPSTREAM psd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	3815826	3R_3815826_SNP [dm3] 3R_7990104_SNP [dm6]	T	A	7.052e^-4	0.989	INTRON CG2781
2R	13510464	2R_13510464_SNP [dm3] 2R_17622959_SNP [dm6]	A	G	7.057e^-4	0.989	INTRON CG10936
2R	12045355	2R_12045355_SNP [dm3] 2R_16157850_SNP [dm6]	A	T	7.075e^-4	0.989	SYNONYMOUS_CODING CG10734 INTRON lbk
2L	6015784	2L_6015784_SNP [dm3] 2L_6015784_SNP [dm6]	G	A	7.082e^-4	0.989	INTRON H2.0
3L	4271971	3L_4271971_SNP [dm3] 3L_4271971_SNP [dm6]	T	C	7.082e^-4	0.989	INTRON CG1273
X	18636445	X_18636445_DEL [dm3] X_18742412_DEL [dm6]	CC	C	7.087e^-4	0.989	INTERGENIC
2L	9082678	2L_9082678_SNP [dm3] 2L_9082678_SNP [dm6]	G	C	7.092e^-4	0.989	INTERGENIC
2R	16323558	2R_16323558_SNP [dm3] 2R_20436053_SNP [dm6]	T	C	7.109e^-4	0.989	INTRON CG12484
2R	16323561	2R_16323561_SNP [dm3] 2R_20436056_SNP [dm6]	C	T	7.109e^-4	0.989	INTRON CG12484
3R	14053628	3R_14053628_SNP [dm3] 3R_18227906_SNP [dm6]	G	A	7.120e^-4	0.989	SPLICE_SITE_REGION Mdh2 INTRON Mdh2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6947035	2R_6947035_SNP [dm3] 2R_11059530_SNP [dm6]	G	A	7.129e^-4	0.989	INTRON luna
3R	9973092	3R_9973092_SNP [dm3] 3R_14147370_SNP [dm6]	A	T	7.130e^-4	0.989	INTERGENIC
2R	16336696	2R_16336696_SNP [dm3] 2R_20449191_SNP [dm6]	G	C	7.145e^-4	0.989	INTRON CG12484	TF binding site mE1_TFBS_inv
3L	11029871	3L_11029871_SNP [dm3] 3L_11036771_SNP [dm6]	T	C	7.166e^-4	0.989	UTR_3_PRIME CG43693 DOWNSTREAM CR44547
2R	16030315	2R_16030315_SNP [dm3] 2R_20142810_SNP [dm6]	A	G	7.183e^-4	0.989	INTERGENIC
3R	12838586	3R_12838586_SNP [dm3] 3R_17012864_SNP [dm6]	G	A	7.184e^-4	0.989	DOWNSTREAM CG8907 INTERGENIC
2L	10096892	2L_10096892_SNP [dm3] 2L_10096892_SNP [dm6]	T	C	7.205e^-4	0.989	INTRON CG44153 & 1 other
X	19121991	X_19121991_SNP [dm3] X_19227958_SNP [dm6]	A	C	7.221e^-4	0.989	INTRON CG7884	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	17806912	3R_17806912_SNP [dm3] 3R_21981190_SNP [dm6]	T	C	7.225e^-4	0.989	INTRON Eip93F
2R	8304874	2R_8304874_SNP [dm3] 2R_12417369_SNP [dm6]	C	G	7.237e^-4	0.989	NON_SYNONYMOUS_CODING CG13157	TF binding site mE1_TFBS_cad
3R	2828369	3R_2828369_INS [dm3] 3R_7002647_INS [dm6]	A	AA	7.245e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_cad
2R	6801719	2R_6801719_SNP [dm3] 2R_10914214_SNP [dm6]	A	C	7.251e^-4	0.989	INTERGENIC
3R	15302307	3R_15302307_SNP [dm3] 3R_19476585_SNP [dm6]	G	A	7.252e^-4	0.989	UPSTREAM Dys INTRON Dys	TF binding site mE1_TFBS_inv
2R	8970748	2R_8970748_SNP [dm3] 2R_13083243_SNP [dm6]	C	T	7.258e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8970774	2R_8970774_SNP [dm3] 2R_13083269_SNP [dm6]	C	G	7.258e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17271990	3L_17271990_SNP [dm3] 3L_17278890_SNP [dm6]	A	C	7.259e^-4	0.989	INTERGENIC
3R	24829722	3R_24829722_SNP [dm3] 3R_29004000_SNP [dm6]	T	C	7.265e^-4	0.989	INTRON wat
2L	11355234	2L_11355234_SNP [dm3] 2L_11355234_SNP [dm6]	C	A	7.271e^-4	0.989	DOWNSTREAM CR44586 INTERGENIC	regulatory region REDfly_CRMs
3L	20600036	3L_20600036_SNP [dm3] 3L_20606936_SNP [dm6]	A	G	7.281e^-4	0.989	INTRON knrl
3R	21568900	3R_21568900_SNP [dm3] 3R_25743178_SNP [dm6]	T	C	7.289e^-4	0.989	INTRON LpR1
3L	10644064	3L_10644064_SNP [dm3] 3L_10650964_SNP [dm6]	A	G	7.300e^-4	0.989	INTRON CG32066
3L	10644093	3L_10644093_SNP [dm3] 3L_10650993_SNP [dm6]	C	T	7.300e^-4	0.989	INTRON CG32066
2L	13693987	2L_13693987_SNP [dm3] 2L_13693987_SNP [dm6]	G	C	7.323e^-4	0.989	INTRON CG31814
2R	2989676	2R_2989676_DEL [dm3] 2R_7102171_DEL [dm6]	CTGTTTATTTGAGATCTATA...	T	7.328e^-4	0.989	INTRON esn
2R	2989711	2R_2989711_SNP [dm3] 2R_7102206_SNP [dm6]	C	T	7.328e^-4	0.989	INTRON esn
X	16469340	X_16469340_SNP [dm3] X_16575307_SNP [dm6]	A	G	7.344e^-4	0.989	INTRON CanA-14F	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13107479	3R_13107479_SNP [dm3] 3R_17281757_SNP [dm6]	G	C	7.354e^-4	0.989	INTERGENIC
3L	6379158	3L_6379158_SNP [dm3] 3L_6386058_SNP [dm6]	A	G	7.355e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	20767500	3R_20767500_SNP [dm3] 3R_24941778_SNP [dm6]	A	T	7.356e^-4	0.989	SYNONYMOUS_CODING ssh	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8659920	3L_8659920_SNP [dm3] 3L_8666820_SNP [dm6]	G	T	7.362e^-4	0.989	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
X	2548542	X_2548542_SNP [dm3] X_2654509_SNP [dm6]	A	G	7.367e^-4	0.989	INTRON sgg
X	4000025	X_4000025_SNP [dm3] X_4105992_SNP [dm6]	A	G	7.376e^-4	0.989	UPSTREAM cib DOWNSTREAM brn INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
2R	6948402	2R_6948402_SNP [dm3] 2R_11060897_SNP [dm6]	A	G	7.377e^-4	0.989	INTRON luna
2L	13821368	2L_13821368_SNP [dm3] 2L_13821368_SNP [dm6]	G	T	7.382e^-4	0.989	UTR_5_PRIME b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24896639	3R_24896639_SNP [dm3] 3R_29070917_SNP [dm6]	C	G	7.384e^-4	0.989	INTRON CG11873	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
X	20746466	X_20746466_SNP [dm3] X_20875439_SNP [dm6]	T	G	7.389e^-4	0.989	DOWNSTREAM CR11235 INTRON shakB
2L	7906722	2L_7906722_SNP [dm3] 2L_7906722_SNP [dm6]	T	C	7.396e^-4	0.989	INTRON Snoo
2R	15757334	2R_15757334_SNP [dm3] 2R_19869829_SNP [dm6]	A	G	7.402e^-4	0.989	DOWNSTREAM CR44460 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_inv
3R	19762466	3R_19762466_DEL [dm3] 3R_23936744_DEL [dm6]	TT	T	7.403e^-4	0.989	DOWNSTREAM CG5854 INTRON Gdh
X	14412531	X_14412531_SNP [dm3] X_14518498_SNP [dm6]	G	A	7.405e^-4	0.989	INTRON CR44110
3L	18142346	3L_18142346_SNP [dm3] 3L_18149246_SNP [dm6]	C	A	7.408e^-4	0.989	SYNONYMOUS_CODING CG7330
2R	844852	2R_844852_SNP [dm3] 2R_4957347_SNP [dm6]	C	T	7.419e^-4	0.989	INTRON Ir41a	transposable element FlyBase
X	2574159	X_2574159_SNP [dm3] X_2680126_SNP [dm6]	T	C	7.493e^-4	0.989	DOWNSTREAM HLH3B & 1 other INTERGENIC
2R	15702333	2R_15702333_SNP [dm3] 2R_19814828_SNP [dm6]	T	G	7.495e^-4	0.989	UPSTREAM Obp56h INTERGENIC	regulatory region REDfly_CRMs
3R	7107445	3R_7107445_INS [dm3] 3R_11281723_INS [dm6]	G	GCG	7.504e^-4	0.989	INTRON CR31386	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	659746	X_659746_SNP [dm3] X_765713_SNP [dm6]	C	T	7.525e^-4	0.989	UPSTREAM RpL22 EXON CR44966	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2R	9873048	2R_9873048_SNP [dm3] 2R_13985543_SNP [dm6]	T	C	7.525e^-4	0.989	UTR_3_PRIME RN-tre DOWNSTREAM CG8067 & 1 other
3L	3881755	3L_3881755_SNP [dm3] 3L_3881755_SNP [dm6]	A	G	7.547e^-4	0.989	INTERGENIC
2L	16537187	2L_16537187_SNP [dm3] 2L_16537187_SNP [dm6]	T	C	7.554e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	12206804	X_12206804_SNP [dm3] X_12312771_SNP [dm6]	C	T	7.562e^-4	0.989	INTRON Ten-a
3L	20252634	3L_20252634_SNP [dm3] 3L_20259534_SNP [dm6]	C	T	7.563e^-4	0.989	UPSTREAM rdgC INTRON rdgC
2R	2924307	2R_2924307_DEL [dm3] 2R_7036802_DEL [dm6]	TC	T	7.572e^-4	0.989	UTR_3_PRIME Tsp42Ei & 1 other DOWNSTREAM Tsp42Ei	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	19963001	3L_19963001_SNP [dm3] 3L_19969901_SNP [dm6]	C	G	7.579e^-4	0.989	INTRON Ac76E
2L	11148252	2L_11148252_SNP [dm3] 2L_11148252_SNP [dm6]	T	C	7.591e^-4	0.989	INTRON Gyc32E
X	16448995	X_16448995_SNP [dm3] X_16554962_SNP [dm6]	T	A	7.605e^-4	0.989	UTR_3_PRIME Pp2B-14D UPSTREAM Arp2 DOWNSTREAM Pp2B-14D	TF binding site mE1_TFBS_kn
X	16448996	X_16448996_SNP [dm3] X_16554963_SNP [dm6]	A	C	7.605e^-4	0.989	UTR_3_PRIME Pp2B-14D UPSTREAM Arp2 DOWNSTREAM Pp2B-14D	TF binding site mE1_TFBS_kn
3L	1380738	3L_1380738_SNP [dm3] 3L_1380738_SNP [dm6]	C	T	7.621e^-4	0.989	DOWNSTREAM tRNA:CR32330 & 2 others INTRON Ptp61F & 1 other	TF binding site BDTNP1_TFBS_dl
X	20038958	X_20038958_SNP [dm3] X_20144925_SNP [dm6]	G	C	7.631e^-4	0.989	INTERGENIC
2R	17297656	2R_17297656_SNP [dm3] 2R_21410151_SNP [dm6]	T	C	7.641e^-4	0.989	INTRON Sdc
2L	10053499	2L_10053499_SNP [dm3] 2L_10053499_SNP [dm6]	A	G	7.641e^-4	0.989	UPSTREAM CR44875 & 1 other INTERGENIC
2R	15272405	2R_15272405_SNP [dm3] 2R_19384900_SNP [dm6]	G	A	7.659e^-4	0.989	UTR_3_PRIME CG10073
2L	10991701	2L_10991701_SNP [dm3] 2L_10991701_SNP [dm6]	C	G	7.695e^-4	0.989	SYNONYMOUS_CODING CG16833
2L	15739547	2L_15739547_SNP [dm3] 2L_15739547_SNP [dm6]	G	A	7.696e^-4	0.989	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25973194	3R_25973194_SNP [dm3] 3R_30147472_SNP [dm6]	G	A	7.701e^-4	0.989	INTRON AdoR
2R	11686176	2R_11686176_SNP [dm3] 2R_15798671_SNP [dm6]	A	C	7.718e^-4	0.989	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	6015794	2L_6015794_SNP [dm3] 2L_6015794_SNP [dm6]	C	T	7.723e^-4	0.989	INTRON H2.0
2L	6015812	2L_6015812_SNP [dm3] 2L_6015812_SNP [dm6]	G	A	7.723e^-4	0.989	INTRON H2.0
2R	17355274	2R_17355274_SNP [dm3] 2R_21467769_SNP [dm6]	A	T	7.730e^-4	0.989	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	4928075	X_4928075_SNP [dm3] X_5034042_SNP [dm6]	A	T	7.739e^-4	0.989	INTRON CR44833
X	5866221	X_5866221_SNP [dm3] X_5972188_SNP [dm6]	A	C	7.763e^-4	0.989	INTRON Grip
X	19800933	X_19800933_SNP [dm3] X_19906900_SNP [dm6]	T	C	7.766e^-4	0.989	UTR_3_PRIME Hers DOWNSTREAM Hers	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17207040	3R_17207040_SNP [dm3] 3R_21381318_SNP [dm6]	T	A	7.767e^-4	0.989	INTRON tin	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	10644091	3L_10644091_SNP [dm3] 3L_10650991_SNP [dm6]	C	A	7.772e^-4	0.989	INTRON CG32066
3L	14878478	3L_14878478_SNP [dm3] 3L_14885378_SNP [dm6]	C	T	7.782e^-4	0.989	EXON CR44702
3R	11355146	3R_11355146_SNP [dm3] 3R_15529424_SNP [dm6]	A	T	7.783e^-4	0.989	DOWNSTREAM CG31296 INTERGENIC
2L	5261825	2L_5261825_SNP [dm3] 2L_5261825_SNP [dm6]	G	C	7.784e^-4	0.989	INTRON tkv	TF binding site BDTNP1_TFBS_twi
X	16529504	X_16529504_SNP [dm3] X_16635471_SNP [dm6]	G	A	7.797e^-4	0.989	INTRON Rok
3L	19046613	3L_19046613_SNP [dm3] 3L_19053513_SNP [dm6]	C	T	7.800e^-4	0.989	UPSTREAM CG43407 DOWNSTREAM CR44675 INTERGENIC
2L	4951335	2L_4951335_SNP [dm3] 2L_4951335_SNP [dm6]	T	C	7.803e^-4	0.989	UPSTREAM Jon25Biii DOWNSTREAM Jon25Bii INTERGENIC
3R	13623064	3R_13623064_SNP [dm3] 3R_17797342_SNP [dm6]	A	G	7.806e^-4	0.989	SYNONYMOUS_CODING CG7379	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20496324	2R_20496324_SNP [dm3] 2R_24608801_SNP [dm6]	G	A	7.812e^-4	0.989	DOWNSTREAM CG42361 INTRON CG42360	TF binding site mE1_TFBS_cad
3R	15932029	3R_15932029_SNP [dm3] 3R_20106307_SNP [dm6]	C	T	7.814e^-4	0.989	DOWNSTREAM CG31206 INTERGENIC
2R	15204211	2R_15204211_INS [dm3] 2R_19316706_INS [dm6]	T	TT	7.827e^-4	0.989	INTRON Rgk1
3R	22877840	3R_22877840_SNP [dm3] 3R_27052118_SNP [dm6]	C	G	7.849e^-4	0.989	INTRON RYa-R
3L	2659255	3L_2659255_SNP [dm3] 3L_2659255_SNP [dm6]	C	G	7.849e^-4	0.989	UPSTREAM CG33233 INTRON Fife	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2659364	3L_2659364_DEL [dm3] 3L_2659364_DEL [dm6]	GCC	AA	7.849e^-4	0.989	UPSTREAM CG33233 INTRON Fife	TF binding site mE1_TFBS_chinmo
2R	8936461	2R_8936461_SNP [dm3] 2R_13048956_SNP [dm6]	A	T	7.857e^-4	0.989	DOWNSTREAM CG13324 INTERGENIC
2R	636586	2R_636586_SNP [dm3] 2R_4749081_SNP [dm6]	A	C	7.871e^-4	0.989	UPSTREAM conu INTRON conu
3L	3128015	3L_3128015_SNP [dm3] 3L_3128015_SNP [dm6]	T	A	7.889e^-4	0.989	UPSTREAM prominin-like DOWNSTREAM CG11537 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13997231	3R_13997231_SNP [dm3] 3R_18171509_SNP [dm6]	T	C	7.895e^-4	0.989	NON_SYNONYMOUS_CODING PP2A-B' INTRON PP2A-B'	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	18021591	2R_18021591_SNP [dm3] 2R_22134086_SNP [dm6]	T	C	7.895e^-4	0.989	INTERGENIC
2L	7805809	2L_7805809_INS [dm3] 2L_7805809_INS [dm6]	T	TT	7.896e^-4	0.989	INTRON cdc14	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5864782	3R_5864782_SNP [dm3] 3R_10039060_SNP [dm6]	T	G	7.904e^-4	0.989	INTRON Mical
X	20238828	X_20238828_SNP [dm3] X_20367801_SNP [dm6]	G	A	7.914e^-4	0.989	INTERGENIC
2R	14449253	2R_14449253_SNP [dm3] 2R_18561748_SNP [dm6]	A	T	7.914e^-4	0.989	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	12170878	2L_12170878_SNP [dm3] 2L_12170878_SNP [dm6]	A	T	7.918e^-4	0.989	SYNONYMOUS_CODING CG17217 DOWNSTREAM CG6583 & 1 other
3L	11009919	3L_11009919_SNP [dm3] 3L_11016819_SNP [dm6]	C	T	7.919e^-4	0.989	INTERGENIC
2L	16539626	2L_16539626_SNP [dm3] 2L_16539626_SNP [dm6]	G	T	7.941e^-4	0.989	INTERGENIC
X	15393243	X_15393243_SNP [dm3] X_15499210_SNP [dm6]	T	C	7.948e^-4	0.989	UTR_5_PRIME Gmap INTRON Gmap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13447940	2L_13447940_SNP [dm3] 2L_13447940_SNP [dm6]	C	G	7.967e^-4	0.989	SYNONYMOUS_CODING Hsp60D INTRON CG42784
3R	24138883	3R_24138883_SNP [dm3] 3R_28313161_SNP [dm6]	A	G	7.980e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_cad
3R	14761495	3R_14761495_SNP [dm3] 3R_18935773_SNP [dm6]	T	A	7.992e^-4	0.989	INTRON CG42613
3L	3303026	3L_3303026_SNP [dm3] 3L_3303026_SNP [dm6]	G	A	8.002e^-4	0.989	UPSTREAM CG14968 & 1 other INTRON CG14968	TF binding site BDTNP1_TFBS_dl
2L	11087715	2L_11087715_SNP [dm3] 2L_11087715_SNP [dm6]	A	G	8.003e^-4	0.989	UPSTREAM CG16854 INTRON CG16854
X	4928089	X_4928089_SNP [dm3] X_5034056_SNP [dm6]	A	G	8.003e^-4	0.989	INTRON CR44833
3R	22309599	3R_22309599_SNP [dm3] 3R_26483877_SNP [dm6]	A	T	8.016e^-4	0.989	INTRON plum
2L	4009895	2L_4009895_SNP [dm3] 2L_4009895_SNP [dm6]	T	G	8.018e^-4	0.989	DOWNSTREAM CG43774 INTERGENIC
2L	4009896	2L_4009896_SNP [dm3] 2L_4009896_SNP [dm6]	T	C	8.018e^-4	0.989	DOWNSTREAM CG43774 INTERGENIC
2L	10784586	2L_10784586_SNP [dm3] 2L_10784586_SNP [dm6]	G	T	8.020e^-4	0.989	DOWNSTREAM CR44582 INTRON CG31869
X	5331595	X_5331595_SNP [dm3] X_5437562_SNP [dm6]	C	G	8.022e^-4	0.989	INTERGENIC
2L	2700881	2L_2700881_SNP [dm3] 2L_2700881_SNP [dm6]	C	T	8.023e^-4	0.989	INTRON CG31690	TF binding site mE1_TFBS_cad
2L	1257447	2L_1257447_SNP [dm3] 2L_1257447_SNP [dm6]	A	G	8.024e^-4	0.989	INTRON robo3
3R	19217397	3R_19217397_SNP [dm3] 3R_23391675_SNP [dm6]	G	A	8.034e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11868515	3L_11868515_SNP [dm3] 3L_11875415_SNP [dm6]	T	A	8.034e^-4	0.989	INTRON CG44837
2L	2982150	2L_2982150_SNP [dm3] 2L_2982150_SNP [dm6]	G	A	8.044e^-4	0.989	SYNONYMOUS_CODING Chd1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	15446054	X_15446054_SNP [dm3] X_15552021_SNP [dm6]	A	G	8.047e^-4	0.989	INTRON Ac13E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	1074232	2R_1074232_SNP [dm3] 2R_5186727_SNP [dm6]	A	G	8.048e^-4	0.989	SYNONYMOUS_CODING Nipped-A
2L	9262581	2L_9262581_SNP [dm3] 2L_9262581_SNP [dm6]	G	A	8.048e^-4	0.989	INTRON Ggamma30A EXON CR45262
2L	13732136	2L_13732136_SNP [dm3] 2L_13732136_SNP [dm6]	C	G	8.066e^-4	0.989	INTERGENIC
X	11679914	X_11679914_SNP [dm3] X_11785881_SNP [dm6]	G	A	8.088e^-4	0.989	INTERGENIC
3L	1555338	3L_1555338_SNP [dm3] 3L_1555338_SNP [dm6]	C	T	8.095e^-4	0.989	DOWNSTREAM CG12099 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	5309200	2R_5309200_SNP [dm3] 2R_9421695_SNP [dm6]	G	A	8.101e^-4	0.989	DOWNSTREAM CG13955 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	6623973	2L_6623973_SNP [dm3] 2L_6623973_SNP [dm6]	A	C	8.101e^-4	0.989	NON_SYNONYMOUS_CODING CG34345
3R	23016947	3R_23016947_SNP [dm3] 3R_27191225_SNP [dm6]	G	A	8.105e^-4	0.989	INTRON Ser
3L	653585	3L_653585_SNP [dm3] 3L_653585_SNP [dm6]	G	T	8.107e^-4	0.989	SYNONYMOUS_CODING MED30 UPSTREAM CG3402 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	9983186	3R_9983186_DEL [dm3] 3R_14157464_DEL [dm6]	TAAACTCAGAGCT...	T	8.140e^-4	0.989	UPSTREAM CG31533 DOWNSTREAM CG31327 INTERGENIC
3L	4105885	3L_4105885_SNP [dm3] 3L_4105885_SNP [dm6]	C	T	8.156e^-4	0.989	SYNONYMOUS_CODING Fit1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	19579581	2L_19579581_SNP [dm3] 2L_19579581_SNP [dm6]	A	C	8.166e^-4	0.989	SYNONYMOUS_CODING CG10268 DOWNSTREAM msb1l	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
2L	5965552	2L_5965552_SNP [dm3] 2L_5965552_SNP [dm6]	A	G	8.168e^-4	0.989	SYNONYMOUS_CODING CG13992 UPSTREAM psd
2L	7561738	2L_7561738_SNP [dm3] 2L_7561738_SNP [dm6]	A	C	8.179e^-4	0.989	INTRON RapGAP1
2L	10726225	2L_10726225_SNP [dm3] 2L_10726225_SNP [dm6]	A	G	8.181e^-4	0.989	INTRON CG6431
2L	10216987	2L_10216987_SNP [dm3] 2L_10216987_SNP [dm6]	C	T	8.181e^-4	0.989	SYNONYMOUS_CODING Npc1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11159183	3L_11159183_SNP [dm3] 3L_11166083_SNP [dm6]	G	C	8.189e^-4	0.989	NON_SYNONYMOUS_CODING Alg10 DOWNSTREAM wls	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	8183987	3L_8183987_SNP [dm3] 3L_8190887_SNP [dm6]	T	A	8.189e^-4	0.989	UTR_3_PRIME Atg18a UPSTREAM MED24 DOWNSTREAM CG7387 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
2L	14769310	2L_14769310_SNP [dm3] 2L_14769310_SNP [dm6]	A	T	8.219e^-4	0.989	INTERGENIC
2L	21948041	2L_21948041_SNP [dm3] 2L_21948041_SNP [dm6]	T	C	8.221e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5967771	2L_5967771_SNP [dm3] 2L_5967771_SNP [dm6]	C	G	8.234e^-4	0.989	UPSTREAM Ucp4C & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2R	5285986	2R_5285986_SNP [dm3] 2R_9398481_SNP [dm6]	A	T	8.242e^-4	0.989	UPSTREAM l_2_k10201 INTRON CG8801	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	5286023	2R_5286023_SNP [dm3] 2R_9398518_SNP [dm6]	C	G	8.242e^-4	0.989	UPSTREAM l_2_k10201 INTRON CG8801	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	8918039	2R_8918039_SNP [dm3] 2R_13030534_SNP [dm6]	C	T	8.252e^-4	0.989	INTERGENIC
2L	4253078	2L_4253078_SNP [dm3] 2L_4253078_SNP [dm6]	G	A	8.254e^-4	0.989	INTERGENIC
2R	14535119	2R_14535119_SNP [dm3] 2R_18647614_SNP [dm6]	C	G	8.267e^-4	0.989	INTRON SP2637	TF binding site BDTNP1_TFBS_twi
2L	10135885	2L_10135885_DEL [dm3] 2L_10135885_DEL [dm6]	GAAATCCGGCCGGG...	G	8.275e^-4	0.989	INTRON CG44153
3L	21773372	3L_21773372_SNP [dm3] 3L_21780272_SNP [dm6]	A	T	8.289e^-4	0.989	INTERGENIC
X	12776319	X_12776319_SNP [dm3] X_12882286_SNP [dm6]	G	A	8.293e^-4	0.989	INTRON Pde9
3L	11998262	3L_11998262_SNP [dm3] 3L_12005162_SNP [dm6]	A	T	8.298e^-4	0.989	INTRON CG6928
3L	16987702	3L_16987702_SNP [dm3] 3L_16994602_SNP [dm6]	T	G	8.298e^-4	0.989	DOWNSTREAM CG3764 & 1 other INTERGENIC
3L	3758362	3L_3758362_SNP [dm3] 3L_3758362_SNP [dm6]	G	T	8.301e^-4	0.989	INTRON CG32264	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	3758367	3L_3758367_SNP [dm3] 3L_3758367_SNP [dm6]	A	C	8.301e^-4	0.989	INTRON CG32264	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl

Missing results

By genomic position
Variant impact
Gene name

Hobo_Relative_Cov phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results