DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.777e^-9)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2077 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	6292356	X_6292356_INS [dm3] X_6398323_INS [dm6]	T	TAATTACATTACA...	3.551e^-7	0.448	INTERGENIC
3L	13778968	3L_13778968_SNP [dm3] 3L_13785868_SNP [dm6]	A	G	4.777e^-7	0.448	INTRON bru-3
3L	13779081	3L_13779081_SNP [dm3] 3L_13785981_SNP [dm6]	A	T	1.080e^-6	0.675	INTRON bru-3
3L	15274336	3L_15274336_SNP [dm3] 3L_15281236_SNP [dm6]	T	C	2.196e^-6	0.735	INTERGENIC
3L	13778679	3L_13778679_SNP [dm3] 3L_13785579_SNP [dm6]	C	G	2.258e^-6	0.735	INTRON bru-3
3L	13778680	3L_13778680_SNP [dm3] 3L_13785580_SNP [dm6]	C	A	2.392e^-6	0.735	INTRON bru-3
2R	2919411	2R_2919411_SNP [dm3] 2R_7031906_SNP [dm6]	T	C	3.077e^-6	0.735	SYNONYMOUS_CODING Tsp42Eg
3L	15273575	3L_15273575_SNP [dm3] 3L_15280475_SNP [dm6]	G	A	4.637e^-6	0.735	INTERGENIC
3R	8154162	3R_8154162_SNP [dm3] 3R_12328440_SNP [dm6]	A	T	4.850e^-6	0.735	UPSTREAM CR45583 DOWNSTREAM CR45584 INTERGENIC
3L	9132740	3L_9132740_SNP [dm3] 3L_9139640_SNP [dm6]	G	A	5.348e^-6	0.735	INTRON nwk
3L	13778676	3L_13778676_SNP [dm3] 3L_13785576_SNP [dm6]	A	T	5.470e^-6	0.735	INTRON bru-3
3L	6365631	3L_6365631_SNP [dm3] 3L_6372531_SNP [dm6]	C	A	6.778e^-6	0.735	INTERGENIC
3L	19688262	3L_19688262_SNP [dm3] 3L_19695162_SNP [dm6]	G	A	7.831e^-6	0.735	INTRON verm
3L	18785293	3L_18785293_SNP [dm3] 3L_18792193_SNP [dm6]	G	A	1.008e^-5	0.735	INTRON ftz-f1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_zfh1
3R	8154272	3R_8154272_SNP [dm3] 3R_12328550_SNP [dm6]	T	A	1.054e^-5	0.735	UPSTREAM CR45583 DOWNSTREAM CR45584 INTERGENIC
2L	12415955	2L_12415955_SNP [dm3] 2L_12415955_SNP [dm6]	C	T	1.176e^-5	0.735	INTRON vir-1
X	6292354	X_6292354_SNP [dm3] X_6398321_SNP [dm6]	C	T	1.196e^-5	0.735	INTERGENIC
3R	14175014	3R_14175014_SNP [dm3] 3R_18349292_SNP [dm6]	C	A	1.197e^-5	0.735	INTRON CG15803
3L	13779041	3L_13779041_DEL [dm3] 3L_13785941_DEL [dm6]	GCAG	G	1.219e^-5	0.735	INTRON bru-3
3R	11290385	3R_11290385_SNP [dm3] 3R_15464663_SNP [dm6]	C	T	1.232e^-5	0.735	INTRON AdamTS-A
2L	2516579	2L_2516579_SNP [dm3] 2L_2516579_SNP [dm6]	T	C	1.273e^-5	0.735	DOWNSTREAM CG3528 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	14175017	3R_14175017_SNP [dm3] 3R_18349295_SNP [dm6]	A	T	1.300e^-5	0.735	INTRON CG15803
3L	13778987	3L_13778987_SNP [dm3] 3L_13785887_SNP [dm6]	C	T	1.336e^-5	0.735	INTRON bru-3
3R	14112763	3R_14112763_SNP [dm3] 3R_18287041_SNP [dm6]	T	A	1.371e^-5	0.735	DOWNSTREAM CG8064 INTRON CG7131	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10401472	3R_10401472_SNP [dm3] 3R_14575750_SNP [dm6]	A	G	1.423e^-5	0.735	DOWNSTREAM CG44094 INTRON CG7987	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
X	6292355	X_6292355_SNP [dm3] X_6398322_SNP [dm6]	T	G	1.548e^-5	0.735	INTERGENIC
3L	13634112	3L_13634112_SNP [dm3] 3L_13641012_SNP [dm6]	T	C	1.584e^-5	0.735	INTRON bru-3	TF binding site mE1_TFBS_chinmo
3L	14509408	3L_14509408_SNP [dm3] 3L_14516308_SNP [dm6]	A	T	1.606e^-5	0.735	INTRON bbg
3R	14093494	3R_14093494_SNP [dm3] 3R_18267772_SNP [dm6]	C	T	1.671e^-5	0.735	UPSTREAM CG18599 INTERGENIC	TF binding site mE1_TFBS_run
3R	15332848	3R_15332848_DEL [dm3] 3R_19507126_DEL [dm6]	GCTG	G	1.684e^-5	0.735	INTRON Dys
3R	16083338	3R_16083338_SNP [dm3] 3R_20257616_SNP [dm6]	C	T	1.690e^-5	0.735	INTRON cic	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
X	6109389	X_6109389_SNP [dm3] X_6215356_SNP [dm6]	G	T	1.835e^-5	0.735	INTERGENIC
3L	9614673	3L_9614673_SNP [dm3] 3L_9621573_SNP [dm6]	G	A	1.840e^-5	0.735	SYNONYMOUS_CODING LanB2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	9085759	X_9085759_SNP [dm3] X_9191726_SNP [dm6]	T	G	1.841e^-5	0.735	SYNONYMOUS_CODING CG12057 UPSTREAM CG12056	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9999978	3L_9999978_SNP [dm3] 3L_10006878_SNP [dm6]	G	C	1.857e^-5	0.735	INTRON dpr6
2R	2683863	2R_2683863_SNP [dm3] 2R_6796358_SNP [dm6]	C	T	1.879e^-5	0.735	INTRON Epac
3R	26152017	3R_26152017_SNP [dm3] 3R_30326295_SNP [dm6]	T	C	1.953e^-5	0.735	INTRON hdc	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_chinmo
2L	16574149	2L_16574149_SNP [dm3] 2L_16574149_SNP [dm6]	A	G	1.991e^-5	0.735	INTRON CG42389
2R	10175330	2R_10175330_SNP [dm3] 2R_14287825_SNP [dm6]	A	T	1.995e^-5	0.735	UPSTREAM Ih INTRON Ih
2R	6981939	2R_6981939_SNP [dm3] 2R_11094434_SNP [dm6]	C	T	2.013e^-5	0.735	INTRON luna	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	10404979	3R_10404979_SNP [dm3] 3R_14579257_SNP [dm6]	A	C	2.015e^-5	0.735	INTRON stumps
3L	13592733	3L_13592733_SNP [dm3] 3L_13599633_SNP [dm6]	T	C	2.032e^-5	0.735	INTRON bru-3 EXON CR45120
2L	5407332	2L_5407332_SNP [dm3] 2L_5407332_SNP [dm6]	G	C	2.082e^-5	0.735	SYNONYMOUS_CODING H15	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	2683849	2R_2683849_SNP [dm3] 2R_6796344_SNP [dm6]	T	A	2.151e^-5	0.735	INTRON Epac
3L	13778773	3L_13778773_SNP [dm3] 3L_13785673_SNP [dm6]	T	G	2.200e^-5	0.735	INTRON bru-3
3R	14112789	3R_14112789_SNP [dm3] 3R_18287067_SNP [dm6]	C	G	2.295e^-5	0.735	DOWNSTREAM CG8064 INTRON CG7131	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	20513527	2L_20513527_SNP [dm3] 2L_20513527_SNP [dm6]	G	C	2.340e^-5	0.735	UPSTREAM CR45702 INTERGENIC
3L	18216713	3L_18216713_SNP [dm3] 3L_18223613_SNP [dm6]	A	G	2.408e^-5	0.735	INTERGENIC	TF binding site mE1_TFBS_inv
3L	5491304	3L_5491304_SNP [dm3] 3L_5498204_SNP [dm6]	T	A	2.425e^-5	0.735	NON_SYNONYMOUS_CODING blanks	TF binding site mE1_TFBS_cnc
2R	12261227	2R_12261227_DEL [dm3] 2R_16373722_DEL [dm6]	CAGCTAAC	C	2.463e^-5	0.735	INTERGENIC
3L	18216755	3L_18216755_SNP [dm3] 3L_18223655_SNP [dm6]	T	C	2.497e^-5	0.735	INTERGENIC	TF binding site mE1_TFBS_inv
3L	12434651	3L_12434651_SNP [dm3] 3L_12441551_SNP [dm6]	G	T	2.498e^-5	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	12210136	3L_12210136_SNP [dm3] 3L_12217036_SNP [dm6]	G	C	2.572e^-5	0.735	INTRON app
2R	14837253	2R_14837253_SNP [dm3] 2R_18949748_SNP [dm6]	G	A	2.588e^-5	0.735	INTRON sano	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18216746	3L_18216746_SNP [dm3] 3L_18223646_SNP [dm6]	G	T	2.640e^-5	0.735	INTERGENIC	TF binding site mE1_TFBS_inv
3R	8154288	3R_8154288_SNP [dm3] 3R_12328566_SNP [dm6]	T	A	2.645e^-5	0.735	UPSTREAM CR45583 DOWNSTREAM CR45584 INTERGENIC
3L	14509420	3L_14509420_SNP [dm3] 3L_14516320_SNP [dm6]	C	G	2.661e^-5	0.735	INTRON bbg
3L	19457405	3L_19457405_SNP [dm3] 3L_19464305_SNP [dm6]	C	A	2.699e^-5	0.735	NON_SYNONYMOUS_CODING CG14095
2R	15479116	2R_15479116_SNP [dm3] 2R_19591611_SNP [dm6]	G	A	2.708e^-5	0.735	INTRON sm
3R	16082917	3R_16082917_SNP [dm3] 3R_20257195_SNP [dm6]	A	G	2.795e^-5	0.735	INTRON cic	TF binding site BDTNP1_TFBS_dl
3R	9842015	3R_9842015_SNP [dm3] 3R_14016293_SNP [dm6]	T	G	2.838e^-5	0.735	INTRON rdx
3L	15280763	3L_15280763_SNP [dm3] 3L_15287663_SNP [dm6]	T	C	2.851e^-5	0.735	INTERGENIC
2L	15775741	2L_15775741_SNP [dm3] 2L_15775741_SNP [dm6]	G	A	2.898e^-5	0.735	DOWNSTREAM CG43760 INTERGENIC
3L	14313095	3L_14313095_SNP [dm3] 3L_14319995_SNP [dm6]	T	G	2.906e^-5	0.735	INTRON fz
3R	6265489	3R_6265489_SNP [dm3] 3R_10439767_SNP [dm6]	A	T	2.908e^-5	0.735	INTERGENIC
3L	7474330	3L_7474330_SNP [dm3] 3L_7481230_SNP [dm6]	G	C	2.945e^-5	0.735	INTERGENIC
2L	1732430	2L_1732430_SNP [dm3] 2L_1732430_SNP [dm6]	T	C	2.968e^-5	0.735	UPSTREAM CG17646 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	12287942	2L_12287942_DEL [dm3] 2L_12287942_DEL [dm6]	TT	T	3.012e^-5	0.735	INTRON aret
3L	18216753	3L_18216753_SNP [dm3] 3L_18223653_SNP [dm6]	C	A	3.042e^-5	0.735	INTERGENIC	TF binding site mE1_TFBS_inv
3L	18216750	3L_18216750_SNP [dm3] 3L_18223650_SNP [dm6]	A	T	3.162e^-5	0.735	INTERGENIC	TF binding site mE1_TFBS_inv
3L	14509424	3L_14509424_SNP [dm3] 3L_14516324_SNP [dm6]	T	C	3.167e^-5	0.735	INTRON bbg
3L	18216758	3L_18216758_SNP [dm3] 3L_18223658_SNP [dm6]	T	G	3.273e^-5	0.735	INTERGENIC	TF binding site mE1_TFBS_inv
2R	2683796	2R_2683796_SNP [dm3] 2R_6796291_SNP [dm6]	T	C	3.414e^-5	0.735	INTRON Epac
3L	12434657	3L_12434657_SNP [dm3] 3L_12441557_SNP [dm6]	G	T	3.427e^-5	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	11464738	3R_11464738_INS [dm3] 3R_15639016_INS [dm6]	T	TTAGTTAATATTTTCAA...	3.450e^-5	0.735	DOWNSTREAM CG43336 INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	11464743	3R_11464743_INS [dm3] 3R_15639021_INS [dm6]	A	AAACACAACTATAGTGAATT...	3.450e^-5	0.735	DOWNSTREAM CG43336 INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	8814770	3L_8814770_INS [dm3] 3L_8821670_INS [dm6]	C	CGGC	3.460e^-5	0.735	INTERGENIC
2R	3288988	2R_3288988_SNP [dm3] 2R_7401483_SNP [dm6]	A	G	3.466e^-5	0.735	UPSTREAM CG11113 DOWNSTREAM CG11112 INTRON Eaf
3R	14032944	3R_14032944_SNP [dm3] 3R_18207222_SNP [dm6]	T	C	3.468e^-5	0.735	INTRON CG7985
3L	18216735	3L_18216735_SNP [dm3] 3L_18223635_SNP [dm6]	C	G	3.548e^-5	0.735	INTERGENIC	TF binding site mE1_TFBS_inv
X	15156950	X_15156950_INS [dm3] X_15262917_INS [dm6]	A	ATT	3.579e^-5	0.735	INTERGENIC
3R	14112756	3R_14112756_SNP [dm3] 3R_18287034_SNP [dm6]	T	C	3.584e^-5	0.735	DOWNSTREAM CG8064 INTRON CG7131	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14112758	3R_14112758_SNP [dm3] 3R_18287036_SNP [dm6]	C	A	3.584e^-5	0.735	DOWNSTREAM CG8064 INTRON CG7131	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6737400	2L_6737400_SNP [dm3] 2L_6737400_SNP [dm6]	C	T	3.587e^-5	0.735	SYNONYMOUS_CODING TTLL3A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11464735	3R_11464735_SNP [dm3] 3R_15639013_SNP [dm6]	T	A	3.588e^-5	0.735	DOWNSTREAM CG43336 INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	9268130	2R_9268130_SNP [dm3] 2R_13380625_SNP [dm6]	T	A	3.618e^-5	0.735	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	10993522	2R_10993522_SNP [dm3] 2R_15106017_SNP [dm6]	T	A	3.731e^-5	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10175299	2R_10175299_SNP [dm3] 2R_14287794_SNP [dm6]	A	G	3.764e^-5	0.735	UPSTREAM Ih INTRON Ih
3R	10401529	3R_10401529_SNP [dm3] 3R_14575807_SNP [dm6]	C	T	3.824e^-5	0.735	UTR_5_PRIME CG7987 DOWNSTREAM CG44094	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3L	14509523	3L_14509523_SNP [dm3] 3L_14516423_SNP [dm6]	C	A	3.828e^-5	0.735	INTRON bbg
2L	10352691	2L_10352691_DEL [dm3] 2L_10352691_DEL [dm6]	CA	T	3.835e^-5	0.735	UPSTREAM CG34367 INTRON CG34367
X	19667099	X_19667099_SNP [dm3] X_19773066_SNP [dm6]	T	C	3.863e^-5	0.735	INTRON vfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13241544	3L_13241544_SNP [dm3] 3L_13248444_SNP [dm6]	A	G	3.894e^-5	0.735	SYNONYMOUS_CODING CG32119 INTRON caps
3L	8377747	3L_8377747_SNP [dm3] 3L_8384647_SNP [dm6]	T	C	3.952e^-5	0.735	INTRON ImpE1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10818484	3L_10818484_SNP [dm3] 3L_10825384_SNP [dm6]	A	G	3.970e^-5	0.735	EXON CR45246
2R	6854868	2R_6854868_SNP [dm3] 2R_10967363_SNP [dm6]	A	C	4.018e^-5	0.735	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	14112769	3R_14112769_DEL [dm3] 3R_18287047_DEL [dm6]	AT	G	4.027e^-5	0.735	DOWNSTREAM CG8064 INTRON CG7131	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	15156910	X_15156910_DEL [dm3] X_15262877_DEL [dm6]	AAAATCA	A	4.036e^-5	0.735	INTERGENIC
3L	18216702	3L_18216702_DEL [dm3] 3L_18223602_DEL [dm6]	AT	A	4.156e^-5	0.735	INTERGENIC	TF binding site mE1_TFBS_inv
3L	18216709	3L_18216709_SNP [dm3] 3L_18223609_SNP [dm6]	G	A	4.156e^-5	0.735	INTERGENIC	TF binding site mE1_TFBS_inv
3L	18216710	3L_18216710_INS [dm3] 3L_18223610_INS [dm6]	G	GCTTAAAC	4.156e^-5	0.735	INTERGENIC	TF binding site mE1_TFBS_inv
3L	15274151	3L_15274151_SNP [dm3] 3L_15281051_SNP [dm6]	C	A	4.183e^-5	0.735	INTERGENIC
3L	7159214	3L_7159214_SNP [dm3] 3L_7166114_SNP [dm6]	C	T	4.192e^-5	0.735	SYNONYMOUS_CODING Dscam2	TF binding site mE1_TFBS_cad
3R	16082922	3R_16082922_SNP [dm3] 3R_20257200_SNP [dm6]	C	G	4.204e^-5	0.735	INTRON cic	TF binding site BDTNP1_TFBS_dl
3L	18216668	3L_18216668_SNP [dm3] 3L_18223568_SNP [dm6]	G	A	4.302e^-5	0.735	INTERGENIC	TF binding site mE1_TFBS_inv
2R	20031790	2R_20031790_SNP [dm3] 2R_24144267_SNP [dm6]	G	C	4.323e^-5	0.735	INTRON Dat
3L	15895291	3L_15895291_DEL [dm3] 3L_15902191_DEL [dm6]	AA	A	4.368e^-5	0.735	UTR_3_PRIME sff
3R	16082914	3R_16082914_SNP [dm3] 3R_20257192_SNP [dm6]	T	A	4.381e^-5	0.735	INTRON cic	TF binding site BDTNP1_TFBS_dl
3L	15703870	3L_15703870_SNP [dm3] 3L_15710770_SNP [dm6]	T	A	4.419e^-5	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3R	14112276	3R_14112276_SNP [dm3] 3R_18286554_SNP [dm6]	T	C	4.430e^-5	0.735	SYNONYMOUS_CODING CG8064 DOWNSTREAM CG7131	TF binding site mE1_TFBS_cad
3L	12210137	3L_12210137_SNP [dm3] 3L_12217037_SNP [dm6]	T	A	4.455e^-5	0.735	INTRON app
3L	12801916	3L_12801916_SNP [dm3] 3L_12808816_SNP [dm6]	T	G	4.487e^-5	0.735	NON_SYNONYMOUS_CODING CG32110 INTRON Sap130
3R	9841009	3R_9841009_SNP [dm3] 3R_14015287_SNP [dm6]	A	T	4.689e^-5	0.735	INTRON rdx
2L	7768210	2L_7768210_SNP [dm3] 2L_7768210_SNP [dm6]	C	T	4.746e^-5	0.735	INTRON CG7191
3L	4319280	3L_4319280_SNP [dm3] 3L_4319280_SNP [dm6]	A	G	4.836e^-5	0.735	DOWNSTREAM Claspin INTRON CG32250	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10314655	2L_10314655_SNP [dm3] 2L_10314655_SNP [dm6]	A	T	4.867e^-5	0.735	UPSTREAM CG4972 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	20378129	3R_20378129_SNP [dm3] 3R_24552407_SNP [dm6]	C	T	4.907e^-5	0.735	SYNONYMOUS_CODING Esyt2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14112800	3R_14112800_SNP [dm3] 3R_18287078_SNP [dm6]	C	T	4.919e^-5	0.735	SPLICE_SITE_REGION CG7131 DOWNSTREAM CG8064 INTRON CG7131	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9614793	3L_9614793_SNP [dm3] 3L_9621693_SNP [dm6]	A	G	5.007e^-5	0.735	SYNONYMOUS_CODING LanB2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14112776	3R_14112776_SNP [dm3] 3R_18287054_SNP [dm6]	C	A	5.018e^-5	0.735	DOWNSTREAM CG8064 INTRON CG7131	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9101874	3L_9101874_SNP [dm3] 3L_9108774_SNP [dm6]	T	A	5.041e^-5	0.735	INTRON bol
3L	13048800	3L_13048800_INS [dm3] 3L_13055700_INS [dm6]	G	GTTCGCTCG	5.050e^-5	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_sens
2L	15833340	2L_15833340_SNP [dm3] 2L_15833340_SNP [dm6]	C	T	5.051e^-5	0.735	DOWNSTREAM CR45368 INTERGENIC
3L	18192555	3L_18192555_SNP [dm3] 3L_18199455_SNP [dm6]	A	C	5.056e^-5	0.735	INTERGENIC
3L	14079197	3L_14079197_SNP [dm3] 3L_14086097_SNP [dm6]	A	T	5.115e^-5	0.735	DOWNSTREAM CG8100 INTERGENIC
3L	14509375	3L_14509375_SNP [dm3] 3L_14516275_SNP [dm6]	A	T	5.131e^-5	0.735	INTRON bbg
3L	16805158	3L_16805158_SNP [dm3] 3L_16812058_SNP [dm6]	T	G	5.147e^-5	0.735	UPSTREAM CG13024 INTRON nudC & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
X	19667002	X_19667002_DEL [dm3] X_19772969_DEL [dm6]	TC	T	5.153e^-5	0.735	INTRON vfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3373642	2L_3373642_SNP [dm3] 2L_3373642_SNP [dm6]	T	A	5.165e^-5	0.735	UTR_3_PRIME CG15412 UPSTREAM CG34394	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6823095	X_6823095_SNP [dm3] X_6929062_SNP [dm6]	A	G	5.202e^-5	0.735	INTRON CG14431
X	4081856	X_4081856_INS [dm3] X_4187823_INS [dm6]	C	CCATC	5.256e^-5	0.735	INTRON Fas2
3L	17092543	3L_17092543_SNP [dm3] 3L_17099443_SNP [dm6]	G	A	5.300e^-5	0.735	INTRON Rbp6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	11653841	3L_11653841_SNP [dm3] 3L_11660741_SNP [dm6]	T	A	5.321e^-5	0.735	INTRON CG32085
3R	8153722	3R_8153722_SNP [dm3] 3R_12328000_SNP [dm6]	A	T	5.560e^-5	0.735	EXON CR45584
3L	14509427	3L_14509427_SNP [dm3] 3L_14516327_SNP [dm6]	G	C	5.570e^-5	0.735	INTRON bbg
2L	1732384	2L_1732384_DEL [dm3] 2L_1732384_DEL [dm6]	CA	C	5.606e^-5	0.735	UPSTREAM CG17646 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	16083390	3R_16083390_SNP [dm3] 3R_20257668_SNP [dm6]	C	A	5.621e^-5	0.735	INTRON cic	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2L	15833103	2L_15833103_SNP [dm3] 2L_15833103_SNP [dm6]	A	G	5.632e^-5	0.735	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	19666983	X_19666983_SNP [dm3] X_19772950_SNP [dm6]	T	A	5.820e^-5	0.735	INTRON vfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10389951	3R_10389951_SNP [dm3] 3R_14564229_SNP [dm6]	T	C	5.871e^-5	0.735	DOWNSTREAM CG8087 INTERGENIC
3L	13778978	3L_13778978_SNP [dm3] 3L_13785878_SNP [dm6]	C	A	5.904e^-5	0.735	INTRON bru-3
X	6109329	X_6109329_SNP [dm3] X_6215296_SNP [dm6]	G	T	5.955e^-5	0.735	INTERGENIC
3L	7064537	3L_7064537_SNP [dm3] 3L_7071437_SNP [dm6]	G	T	6.019e^-5	0.735	INTRON CG8641
3L	9931695	3L_9931695_SNP [dm3] 3L_9938595_SNP [dm6]	T	C	6.032e^-5	0.735	INTRON CG34356
2L	15833311	2L_15833311_SNP [dm3] 2L_15833311_SNP [dm6]	C	T	6.065e^-5	0.735	DOWNSTREAM CR45368 INTERGENIC
3L	10922119	3L_10922119_SNP [dm3] 3L_10929019_SNP [dm6]	C	T	6.080e^-5	0.735	INTERGENIC
2L	13152730	2L_13152730_SNP [dm3] 2L_13152730_SNP [dm6]	G	T	6.116e^-5	0.735	INTERGENIC
3L	13335036	3L_13335036_SNP [dm3] 3L_13341936_SNP [dm6]	C	T	6.160e^-5	0.735	INTERGENIC
3R	12791981	3R_12791981_SNP [dm3] 3R_16966259_SNP [dm6]	C	T	6.265e^-5	0.735	INTRON Abd-B	TF binding site mE1_TFBS_cad
3L	14504654	3L_14504654_SNP [dm3] 3L_14511554_SNP [dm6]	T	C	6.369e^-5	0.735	SYNONYMOUS_CODING bbg	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10869833	2L_10869833_SNP [dm3] 2L_10869833_SNP [dm6]	T	C	6.380e^-5	0.735	UPSTREAM CG12517 INTERGENIC	TF binding site mE1_TFBS_inv
2L	9804343	2L_9804343_SNP [dm3] 2L_9804343_SNP [dm6]	T	C	6.393e^-5	0.735	INTRON nAChRalpha6
3L	15703899	3L_15703899_SNP [dm3] 3L_15710799_SNP [dm6]	G	T	6.408e^-5	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25161903	3R_25161903_SNP [dm3] 3R_29336181_SNP [dm6]	C	A	6.416e^-5	0.735	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	4675762	X_4675762_SNP [dm3] X_4781729_SNP [dm6]	C	T	6.502e^-5	0.735	DOWNSTREAM CG15471 INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	8263706	3L_8263706_SNP [dm3] 3L_8270606_SNP [dm6]	G	A	6.545e^-5	0.735	SPLICE_SITE_REGION Dscam4 INTRON Dscam4
3R	14174901	3R_14174901_SNP [dm3] 3R_18349179_SNP [dm6]	C	T	6.547e^-5	0.735	INTRON CG15803
3R	14174907	3R_14174907_SNP [dm3] 3R_18349185_SNP [dm6]	G	C	6.547e^-5	0.735	INTRON CG15803
3L	9179320	3L_9179320_SNP [dm3] 3L_9186220_SNP [dm6]	G	A	6.556e^-5	0.735	INTERGENIC
3L	13120496	3L_13120496_SNP [dm3] 3L_13127396_SNP [dm6]	T	C	6.577e^-5	0.735	INTERGENIC
2L	12411891	2L_12411891_SNP [dm3] 2L_12411891_SNP [dm6]	G	A	6.584e^-5	0.735	INTRON vir-1
3R	12791859	3R_12791859_SNP [dm3] 3R_16966137_SNP [dm6]	G	A	6.593e^-5	0.735	INTRON Abd-B	TF binding site mE1_TFBS_cad
2L	3373705	2L_3373705_SNP [dm3] 2L_3373705_SNP [dm6]	C	T	6.596e^-5	0.735	UPSTREAM CG34394 INTRON CG15412	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16083382	3R_16083382_MNP [dm3] 3R_20257660_MNP [dm6]	TCA	CTC	6.635e^-5	0.735	INTRON cic	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3L	9132734	3L_9132734_DEL [dm3] 3L_9139634_DEL [dm6]	GG	G	6.659e^-5	0.735	INTRON nwk
3L	1081434	3L_1081434_INS [dm3] 3L_1081434_INS [dm6]	C	CACAAGCAAGCGAC...	6.691e^-5	0.735	INTRON bab1
3L	9132739	3L_9132739_SNP [dm3] 3L_9139639_SNP [dm6]	T	C	6.725e^-5	0.735	INTRON nwk
X	19666915	X_19666915_SNP [dm3] X_19772882_SNP [dm6]	A	C	6.781e^-5	0.735	INTRON vfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16539995	X_16539995_INS [dm3] X_16645962_INS [dm6]	A	AACTGCA	6.814e^-5	0.735	INTRON mthl1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	10244138	3L_10244138_SNP [dm3] 3L_10251038_SNP [dm6]	G	A	6.821e^-5	0.735	INTERGENIC
X	15236845	X_15236845_SNP [dm3] X_15342812_SNP [dm6]	T	C	6.854e^-5	0.735	UPSTREAM CG9123 DOWNSTREAM CG12608 INTERGENIC
3R	11464740	3R_11464740_SNP [dm3] 3R_15639018_SNP [dm6]	T	A	6.924e^-5	0.735	DOWNSTREAM CG43336 INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	11464746	3R_11464746_SNP [dm3] 3R_15639024_SNP [dm6]	T	A	6.924e^-5	0.735	DOWNSTREAM CG43336 INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	9047551	3L_9047551_SNP [dm3] 3L_9054451_SNP [dm6]	A	G	6.948e^-5	0.735	UPSTREAM Argk INTRON Argk	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	6131934	2R_6131934_SNP [dm3] 2R_10244429_SNP [dm6]	T	C	6.977e^-5	0.735	SYNONYMOUS_CODING Hdc
3R	8154214	3R_8154214_SNP [dm3] 3R_12328492_SNP [dm6]	C	A	7.000e^-5	0.735	UPSTREAM CR45583 DOWNSTREAM CR45584 INTERGENIC
3L	13778765	3L_13778765_SNP [dm3] 3L_13785665_SNP [dm6]	T	G	7.003e^-5	0.735	INTRON bru-3
3L	4319268	3L_4319268_SNP [dm3] 3L_4319268_SNP [dm6]	A	C	7.014e^-5	0.735	DOWNSTREAM Claspin INTRON CG32250	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13574560	2R_13574560_INS [dm3] 2R_17687055_INS [dm6]	T	TA	7.043e^-5	0.735	DOWNSTREAM CG42562 INTRON HPS4
2L	7747267	2L_7747267_SNP [dm3] 2L_7747267_SNP [dm6]	G	T	7.053e^-5	0.735	UPSTREAM CG7211 INTERGENIC
3L	16821562	3L_16821562_SNP [dm3] 3L_16828462_SNP [dm6]	G	A	7.221e^-5	0.744	INTRON CG13024	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14341883	3R_14341883_SNP [dm3] 3R_18516161_SNP [dm6]	C	T	7.224e^-5	0.744	INTRON fru	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7753532	2L_7753532_SNP [dm3] 2L_7753532_SNP [dm6]	C	G	7.295e^-5	0.744	UPSTREAM CG7203 & 1 other DOWNSTREAM CR45718 INTERGENIC
3L	14501935	3L_14501935_SNP [dm3] 3L_14508835_SNP [dm6]	C	T	7.311e^-5	0.744	NON_SYNONYMOUS_CODING bbg
3L	15776397	3L_15776397_SNP [dm3] 3L_15783297_SNP [dm6]	A	T	7.395e^-5	0.744	INTERGENIC
3L	4319191	3L_4319191_SNP [dm3] 3L_4319191_SNP [dm6]	A	C	7.569e^-5	0.744	SPLICE_SITE_REGION CG32250 DOWNSTREAM Claspin INTRON CG32250	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4766194	3R_4766194_INS [dm3] 3R_8940472_INS [dm6]	T	TA	7.623e^-5	0.744	INTRON skap
3L	9549373	3L_9549373_SNP [dm3] 3L_9556273_SNP [dm6]	A	C	7.642e^-5	0.744	INTRON CG42673
3L	15183205	3L_15183205_SNP [dm3] 3L_15190105_SNP [dm6]	T	C	7.646e^-5	0.744	UPSTREAM CR44562 INTERGENIC
3L	11649992	3L_11649992_SNP [dm3] 3L_11656892_SNP [dm6]	T	A	7.675e^-5	0.744	UPSTREAM mir-274 INTRON CG32085
3R	10980925	3R_10980925_SNP [dm3] 3R_15155203_SNP [dm6]	C	T	7.722e^-5	0.744	INTRON Gyc88E
2R	14341358	2R_14341358_SNP [dm3] 2R_18453853_SNP [dm6]	C	T	7.755e^-5	0.744	NON_SYNONYMOUS_CODING CG17669	TF binding site mE1_TFBS_cad
3L	11649987	3L_11649987_SNP [dm3] 3L_11656887_SNP [dm6]	T	A	7.759e^-5	0.744	UPSTREAM mir-274 INTRON CG32085
2R	16967555	2R_16967555_SNP [dm3] 2R_21080050_SNP [dm6]	A	G	7.782e^-5	0.744	UPSTREAM Treh INTRON Treh
3R	21705338	3R_21705338_SNP [dm3] 3R_25879616_SNP [dm6]	T	A	7.815e^-5	0.744	INTRON Tsp96F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	10869459	2L_10869459_SNP [dm3] 2L_10869459_SNP [dm6]	G	A	7.841e^-5	0.744	UPSTREAM CG12517 INTERGENIC
X	15156962	X_15156962_SNP [dm3] X_15262929_SNP [dm6]	C	T	7.867e^-5	0.744	INTERGENIC
2R	10175195	2R_10175195_SNP [dm3] 2R_14287690_SNP [dm6]	T	G	7.889e^-5	0.744	UPSTREAM Ih INTRON Ih
3R	10389889	3R_10389889_SNP [dm3] 3R_14564167_SNP [dm6]	A	G	7.894e^-5	0.744	DOWNSTREAM CG8087 INTERGENIC
2R	10175317	2R_10175317_SNP [dm3] 2R_14287812_SNP [dm6]	T	A	8.097e^-5	0.759	UPSTREAM Ih INTRON Ih
X	21174351	X_21174351_SNP [dm3] X_21303324_SNP [dm6]	C	T	8.222e^-5	0.762	UPSTREAM CG1718 INTRON CG1718
3R	10404514	3R_10404514_SNP [dm3] 3R_14578792_SNP [dm6]	A	T	8.249e^-5	0.762	INTRON stumps
2L	19072394	2L_19072394_DEL [dm3] 2L_19072394_DEL [dm6]	CTC	C	8.276e^-5	0.762	INTRON CG17572
3L	2673812	3L_2673812_SNP [dm3] 3L_2673812_SNP [dm6]	C	T	8.311e^-5	0.762	INTRON Fife
3R	12759502	3R_12759502_SNP [dm3] 3R_16933780_SNP [dm6]	T	C	8.333e^-5	0.762	START_GAINED Abd-B UTR_5_PRIME Abd-B INTRON Abd-B	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	16797469	3L_16797469_SNP [dm3] 3L_16804369_SNP [dm6]	A	G	8.377e^-5	0.763	UPSTREAM nudC INTRON CG9674	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15332684	3R_15332684_SNP [dm3] 3R_19506962_SNP [dm6]	A	G	8.418e^-5	0.763	INTRON Dys
2L	17454221	2L_17454221_SNP [dm3] 2L_17454221_SNP [dm6]	G	A	8.507e^-5	0.767	DOWNSTREAM CG6639 INTRON CG5050	TF binding site mE1_TFBS_HSA
2R	20052568	2R_20052568_SNP [dm3] 2R_24165045_SNP [dm6]	T	G	8.556e^-5	0.768	INTRON CG3328	TF binding site mE1_TFBS_chinmo
2R	7474093	2R_7474093_SNP [dm3] 2R_11586588_SNP [dm6]	C	T	8.653e^-5	0.771	SYNONYMOUS_CODING tou	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10392630	3R_10392630_SNP [dm3] 3R_14566908_SNP [dm6]	T	G	8.768e^-5	0.771	NON_SYNONYMOUS_CODING CG31313 UTR_3_PRIME CG31313 DOWNSTREAM CG14852 & 1 other	TF binding site mE1_TFBS_cad
X	19666958	X_19666958_SNP [dm3] X_19772925_SNP [dm6]	C	A	8.882e^-5	0.771	INTRON vfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	8897824	X_8897824_SNP [dm3] X_9003791_SNP [dm6]	G	A	8.886e^-5	0.771	INTRON rdgA & 1 other
X	3159646	X_3159646_SNP [dm3] X_3265613_SNP [dm6]	T	C	8.923e^-5	0.771	INTRON dnc
3L	7383213	3L_7383213_SNP [dm3] 3L_7390113_SNP [dm6]	T	C	8.942e^-5	0.771	UPSTREAM CG8563 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	10980717	X_10980717_SNP [dm3] X_11086684_SNP [dm6]	A	G	8.962e^-5	0.771	UPSTREAM sev INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	12434669	3L_12434669_INS [dm3] 3L_12441569_INS [dm6]	T	TT	8.972e^-5	0.771	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	3328531	2L_3328531_SNP [dm3] 2L_3328531_SNP [dm6]	C	T	8.995e^-5	0.771	INTRON CG33282
X	3713529	X_3713529_SNP [dm3] X_3819496_SNP [dm6]	G	A	9.024e^-5	0.771	UPSTREAM tRNA:CR32785 INTRON ec
3L	13633832	3L_13633832_SNP [dm3] 3L_13640732_SNP [dm6]	C	T	9.066e^-5	0.771	INTRON bru-3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18216690	3L_18216690_INS [dm3] 3L_18223590_INS [dm6]	A	ATA	9.080e^-5	0.771	INTERGENIC	TF binding site mE1_TFBS_inv
3L	10922120	3L_10922120_SNP [dm3] 3L_10929020_SNP [dm6]	T	A	9.285e^-5	0.777	INTERGENIC
3L	7297342	3L_7297342_SNP [dm3] 3L_7304242_SNP [dm6]	C	G	9.322e^-5	0.777	INTRON unc-13-4A	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	19666962	X_19666962_SNP [dm3] X_19772929_SNP [dm6]	T	A	9.363e^-5	0.777	INTRON vfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11463458	2R_11463458_SNP [dm3] 2R_15575953_SNP [dm6]	T	G	9.372e^-5	0.777	INTERGENIC
2L	1732310	2L_1732310_INS [dm3] 2L_1732310_INS [dm6]	A	ACAAA	9.406e^-5	0.777	UTR_5_PRIME CG17652 UPSTREAM CG17646	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	6313620	3R_6313620_SNP [dm3] 3R_10487898_SNP [dm6]	G	T	9.407e^-5	0.777	DOWNSTREAM CR45576 INTERGENIC
3R	15333146	3R_15333146_SNP [dm3] 3R_19507424_SNP [dm6]	A	G	9.464e^-5	0.778	INTRON Dys
X	2947586	X_2947586_DEL [dm3] X_3053553_DEL [dm6]	TTGTATCT	T	9.498e^-5	0.778	INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	18216723	3L_18216723_SNP [dm3] 3L_18223623_SNP [dm6]	C	T	9.564e^-5	0.78	INTERGENIC	TF binding site mE1_TFBS_inv
3R	8154299	3R_8154299_SNP [dm3] 3R_12328577_SNP [dm6]	T	C	9.766e^-5	0.791	UPSTREAM CR45583 DOWNSTREAM CR45584 INTERGENIC
X	16094420	X_16094420_SNP [dm3] X_16200387_SNP [dm6]	C	T	9.784e^-5	0.791	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	14910848	3L_14910848_SNP [dm3] 3L_14917748_SNP [dm6]	G	A	9.948e^-5	0.801	INTRON DCX-EMAP
3L	14542987	3L_14542987_SNP [dm3] 3L_14549887_SNP [dm6]	T	A	1.009e^-4	0.802	INTRON CG9238	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10831136	2R_10831136_DEL [dm3] 2R_14943631_DEL [dm6]	AAACA	A	1.014e^-4	0.802	DOWNSTREAM aPKC INTRON CG10257
2L	2516576	2L_2516576_SNP [dm3] 2L_2516576_SNP [dm6]	G	A	1.016e^-4	0.802	DOWNSTREAM CG3528 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12690089	2L_12690089_DEL [dm3] 2L_12690089_DEL [dm6]	ATA	A	1.021e^-4	0.802	DOWNSTREAM CG5525 INTERGENIC	TF binding site mE1_TFBS_inv
3L	13778754	3L_13778754_SNP [dm3] 3L_13785654_SNP [dm6]	C	G	1.024e^-4	0.802	INTRON bru-3
X	16430574	X_16430574_SNP [dm3] X_16536541_SNP [dm6]	A	T	1.029e^-4	0.802	INTERGENIC
3L	4311557	3L_4311557_SNP [dm3] 3L_4311557_SNP [dm6]	C	T	1.030e^-4	0.802	INTERGENIC
3L	14509487	3L_14509487_SNP [dm3] 3L_14516387_SNP [dm6]	A	T	1.032e^-4	0.802	INTRON bbg
2R	20753912	2R_20753912_SNP [dm3] 2R_24866389_SNP [dm6]	A	G	1.037e^-4	0.802	INTERGENIC
3R	10404475	3R_10404475_SNP [dm3] 3R_14578753_SNP [dm6]	T	C	1.041e^-4	0.802	INTRON stumps
2L	15733360	2L_15733360_SNP [dm3] 2L_15733360_SNP [dm6]	G	A	1.043e^-4	0.802	INTRON CycE	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	2981049	2L_2981049_SNP [dm3] 2L_2981049_SNP [dm6]	C	T	1.057e^-4	0.809	SYNONYMOUS_CODING Chd1	TF binding site mE1_TFBS_cad
3R	14032698	3R_14032698_SNP [dm3] 3R_18206976_SNP [dm6]	C	A	1.067e^-4	0.814	INTRON CG7985
2L	8144986	2L_8144986_SNP [dm3] 2L_8144986_SNP [dm6]	G	A	1.077e^-4	0.817	UPSTREAM CG42762 & 1 other INTRON CG8552 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	15934055	3L_15934055_SNP [dm3] 3L_15940955_SNP [dm6]	T	A	1.080e^-4	0.817	INTRON Pka-C3
3L	12845227	3L_12845227_SNP [dm3] 3L_12852127_SNP [dm6]	A	G	1.095e^-4	0.824	DOWNSTREAM Wbp2 INTRON Wbp2
2L	7753530	2L_7753530_SNP [dm3] 2L_7753530_SNP [dm6]	A	T	1.100e^-4	0.824	UPSTREAM CG7203 & 1 other DOWNSTREAM CR45718 INTERGENIC
2R	12806979	2R_12806979_SNP [dm3] 2R_16919474_SNP [dm6]	G	A	1.111e^-4	0.824	INTERGENIC
3R	22874615	3R_22874615_SNP [dm3] 3R_27048893_SNP [dm6]	G	A	1.116e^-4	0.824	UPSTREAM TwdlT INTRON RYa-R	TF binding site mE1_TFBS_HSA
2L	9537189	2L_9537189_SNP [dm3] 2L_9537189_SNP [dm6]	A	C	1.122e^-4	0.824	SYNONYMOUS_CODING Oatp30B	TF binding site mE1_TFBS_cad
2R	11677118	2R_11677118_SNP [dm3] 2R_15789613_SNP [dm6]	A	G	1.124e^-4	0.824	INTRON Zasp52	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	14507346	3L_14507346_SNP [dm3] 3L_14514246_SNP [dm6]	C	T	1.127e^-4	0.824	INTRON bbg	enhancer mE1_CBP_Enhancers TF binding site mE1_TFBS_bab1
3L	5491301	3L_5491301_SNP [dm3] 3L_5498201_SNP [dm6]	G	C	1.128e^-4	0.824	SYNONYMOUS_CODING blanks	TF binding site mE1_TFBS_cnc
2R	14177969	2R_14177969_SNP [dm3] 2R_18290464_SNP [dm6]	C	G	1.129e^-4	0.824	INTRON CG14502 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	17612245	2L_17612245_SNP [dm3] 2L_17612245_SNP [dm6]	C	T	1.138e^-4	0.827	INTERGENIC
2L	19209395	2L_19209395_SNP [dm3] 2L_19209395_SNP [dm6]	A	G	1.150e^-4	0.833	DOWNSTREAM drl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17622938	2L_17622938_SNP [dm3] 2L_17622938_SNP [dm6]	G	A	1.155e^-4	0.833	INTERGENIC
3R	16083360	3R_16083360_DEL [dm3] 3R_20257638_DEL [dm6]	ACTCTTTCCA	A	1.162e^-4	0.834	INTRON cic	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2R	16140933	2R_16140933_INS [dm3] 2R_20253428_INS [dm6]	G	GG	1.165e^-4	0.834	INTRON CG9864
X	21172373	X_21172373_SNP [dm3] X_21301346_SNP [dm6]	G	A	1.185e^-4	0.845	INTRON CG1718
3L	14005889	3L_14005889_SNP [dm3] 3L_14012789_SNP [dm6]	A	C	1.191e^-4	0.845	NON_SYNONYMOUS_CODING upSET	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14093531	3R_14093531_SNP [dm3] 3R_18267809_SNP [dm6]	G	C	1.193e^-4	0.845	UTR_5_PRIME CG18599	TF binding site mE1_TFBS_run
2L	4125199	2L_4125199_SNP [dm3] 2L_4125199_SNP [dm6]	T	G	1.209e^-4	0.853	INTERGENIC
3L	15382459	3L_15382459_SNP [dm3] 3L_15389359_SNP [dm6]	C	T	1.217e^-4	0.855	INTERGENIC
3R	18116602	3R_18116602_DEL [dm3] 3R_22290880_DEL [dm6]	GTTAACAT	G	1.243e^-4	0.864	INTRON SKIP
3L	7159959	3L_7159959_SNP [dm3] 3L_7166859_SNP [dm6]	C	T	1.249e^-4	0.864	SYNONYMOUS_CODING Dscam2
X	19702880	X_19702880_SNP [dm3] X_19808847_SNP [dm6]	G	A	1.249e^-4	0.864	INTERGENIC
X	22232909	X_22232909_SNP [dm3] X_22831073_SNP [dm6]	A	T	1.251e^-4	0.864	INTRON fog	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	10859158	2L_10859158_SNP [dm3] 2L_10859158_SNP [dm6]	A	T	1.253e^-4	0.864	INTRON Stam	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	15646524	3L_15646524_SNP [dm3] 3L_15653424_SNP [dm6]	G	A	1.257e^-4	0.864	DOWNSTREAM Eig71Ed INTERGENIC
3L	13634136	3L_13634136_SNP [dm3] 3L_13641036_SNP [dm6]	G	A	1.290e^-4	0.873	INTRON bru-3	TF binding site mE1_TFBS_chinmo
3R	16082419	3R_16082419_SNP [dm3] 3R_20256697_SNP [dm6]	G	A	1.296e^-4	0.873	INTRON cic
X	14695511	X_14695511_SNP [dm3] X_14801478_SNP [dm6]	C	G	1.296e^-4	0.873	INTRON rut
2L	1732302	2L_1732302_SNP [dm3] 2L_1732302_SNP [dm6]	A	G	1.302e^-4	0.873	UTR_5_PRIME CG17652 UPSTREAM CG17646	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	2674260	3L_2674260_SNP [dm3] 3L_2674260_SNP [dm6]	T	G	1.321e^-4	0.873	INTRON Fife
3L	7868899	3L_7868899_SNP [dm3] 3L_7875799_SNP [dm6]	T	A	1.326e^-4	0.873	INTRON CG32365	TF binding site mE1_TFBS_kn
2L	1732431	2L_1732431_SNP [dm3] 2L_1732431_SNP [dm6]	T	C	1.327e^-4	0.873	UPSTREAM CG17646 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	17875070	X_17875070_SNP [dm3] X_17981037_SNP [dm6]	T	G	1.328e^-4	0.873	INTRON Sh
3R	10389902	3R_10389902_SNP [dm3] 3R_14564180_SNP [dm6]	C	T	1.335e^-4	0.873	DOWNSTREAM CG8087 INTERGENIC
2L	7558896	2L_7558896_SNP [dm3] 2L_7558896_SNP [dm6]	A	C	1.339e^-4	0.873	INTRON RapGAP1
2L	7916066	2L_7916066_SNP [dm3] 2L_7916066_SNP [dm6]	A	G	1.344e^-4	0.873	INTRON Snoo
3R	13070614	3R_13070614_SNP [dm3] 3R_17244892_SNP [dm6]	C	A	1.348e^-4	0.873	INTRON beat-IIb
3L	12612294	3L_12612294_SNP [dm3] 3L_12619194_SNP [dm6]	G	A	1.354e^-4	0.873	INTRON caup
2L	3606086	2L_3606086_SNP [dm3] 2L_3606086_SNP [dm6]	C	G	1.354e^-4	0.873	NON_SYNONYMOUS_CODING odd	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	8752444	3L_8752444_SNP [dm3] 3L_8759344_SNP [dm6]	A	G	1.371e^-4	0.873	SYNONYMOUS_CODING Fhos
X	3712575	X_3712575_SNP [dm3] X_3818542_SNP [dm6]	C	A	1.374e^-4	0.873	INTRON ec
2L	1730610	2L_1730610_SNP [dm3] 2L_1730610_SNP [dm6]	C	T	1.384e^-4	0.873	SYNONYMOUS_CODING CG31937 UPSTREAM Eno DOWNSTREAM Rrp40 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5847414	X_5847414_SNP [dm3] X_5953381_SNP [dm6]	C	T	1.389e^-4	0.873	SYNONYMOUS_CODING CG6048
X	6734628	X_6734628_SNP [dm3] X_6840595_SNP [dm6]	A	G	1.390e^-4	0.873	INTRON CG14435
2R	3294826	2R_3294826_SNP [dm3] 2R_7407321_SNP [dm6]	G	A	1.398e^-4	0.873	UTR_5_PRIME Eaf UPSTREAM mir-4977 INTRON Eaf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16967596	2R_16967596_SNP [dm3] 2R_21080091_SNP [dm6]	A	T	1.398e^-4	0.873	UPSTREAM Treh INTRON Treh
X	9233884	X_9233884_SNP [dm3] X_9339851_SNP [dm6]	C	A	1.399e^-4	0.873	INTRON CG34449
3L	3664208	3L_3664208_SNP [dm3] 3L_3664208_SNP [dm6]	A	G	1.408e^-4	0.873	INTERGENIC
3L	2215600	3L_2215600_SNP [dm3] 3L_2215600_SNP [dm6]	G	T	1.417e^-4	0.873	INTERGENIC
3L	12845222	3L_12845222_SNP [dm3] 3L_12852122_SNP [dm6]	T	C	1.421e^-4	0.873	DOWNSTREAM Wbp2 INTRON Wbp2
3R	22254490	3R_22254490_SNP [dm3] 3R_26428768_SNP [dm6]	G	A	1.428e^-4	0.873	DOWNSTREAM CR31084 EXON CR43434
2R	11846023	2R_11846023_SNP [dm3] 2R_15958518_SNP [dm6]	G	T	1.433e^-4	0.873	SYNONYMOUS_CODING Strn-Mlck DOWNSTREAM Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	8821348	3L_8821348_SNP [dm3] 3L_8828248_SNP [dm6]	G	A	1.436e^-4	0.873	NON_SYNONYMOUS_CODING dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15832545	2L_15832545_SNP [dm3] 2L_15832545_SNP [dm6]	T	A	1.441e^-4	0.873	INTERGENIC
3R	8153838	3R_8153838_SNP [dm3] 3R_12328116_SNP [dm6]	A	T	1.457e^-4	0.873	DOWNSTREAM CR45584 INTERGENIC
X	15461206	X_15461206_DEL [dm3] X_15567173_DEL [dm6]	CCAACCCAAC	C	1.458e^-4	0.873	INTERGENIC
2R	1750659	2R_1750659_SNP [dm3] 2R_5863154_SNP [dm6]	G	A	1.460e^-4	0.873	INTERGENIC	transposable element FlyBase
X	19702873	X_19702873_SNP [dm3] X_19808840_SNP [dm6]	C	G	1.464e^-4	0.873	INTERGENIC
3L	13376956	3L_13376956_SNP [dm3] 3L_13383856_SNP [dm6]	C	A	1.467e^-4	0.873	NON_SYNONYMOUS_CODING ImpL1 UPSTREAM CG14110	TF binding site mE1_TFBS_cad
2R	6448851	2R_6448851_INS [dm3] 2R_10561346_INS [dm6]	A	ATGACTATA	1.467e^-4	0.873	INTRON psq	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20909503	X_20909503_SNP [dm3] X_21038476_SNP [dm6]	G	A	1.471e^-4	0.873	INTRON Ntf-2
3L	13778673	3L_13778673_SNP [dm3] 3L_13785573_SNP [dm6]	A	T	1.478e^-4	0.873	INTRON bru-3
2R	9504952	2R_9504952_SNP [dm3] 2R_13617447_SNP [dm6]	C	T	1.481e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10352680	2L_10352680_SNP [dm3] 2L_10352680_SNP [dm6]	A	T	1.481e^-4	0.873	UPSTREAM CG34367 INTRON CG34367
X	10388656	X_10388656_SNP [dm3] X_10494623_SNP [dm6]	G	C	1.484e^-4	0.873	UPSTREAM spri INTRON spri	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10922129	3L_10922129_DEL [dm3] 3L_10929029_DEL [dm6]	TGATT	T	1.498e^-4	0.873	INTERGENIC
2R	5694440	2R_5694440_SNP [dm3] 2R_9806935_SNP [dm6]	G	A	1.498e^-4	0.873	UPSTREAM CG1688 INTERGENIC
3R	22614827	3R_22614827_SNP [dm3] 3R_26789105_SNP [dm6]	A	G	1.507e^-4	0.873	INTERGENIC
2L	1732416	2L_1732416_SNP [dm3] 2L_1732416_SNP [dm6]	T	G	1.507e^-4	0.873	UPSTREAM CG17646 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	12384252	2R_12384252_SNP [dm3] 2R_16496747_SNP [dm6]	C	A	1.515e^-4	0.873	DOWNSTREAM CG7813 INTERGENIC	TF binding site mE1_TFBS_inv
3L	17668695	3L_17668695_SNP [dm3] 3L_17675595_SNP [dm6]	T	G	1.515e^-4	0.873	INTRON CG34251
2L	9809516	2L_9809516_SNP [dm3] 2L_9809516_SNP [dm6]	T	A	1.517e^-4	0.873	INTRON nAChRalpha6
2L	2516609	2L_2516609_SNP [dm3] 2L_2516609_SNP [dm6]	A	G	1.518e^-4	0.873	DOWNSTREAM CG3528 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	2674051	3L_2674051_SNP [dm3] 3L_2674051_SNP [dm6]	T	C	1.541e^-4	0.873	INTRON Fife
2R	11463305	2R_11463305_SNP [dm3] 2R_15575800_SNP [dm6]	C	G	1.542e^-4	0.873	INTERGENIC
3R	8083272	3R_8083272_SNP [dm3] 3R_12257550_SNP [dm6]	C	T	1.544e^-4	0.873	DOWNSTREAM CG3942 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	7159271	3L_7159271_SNP [dm3] 3L_7166171_SNP [dm6]	T	C	1.548e^-4	0.873	SYNONYMOUS_CODING Dscam2	TF binding site mE1_TFBS_cad
3R	16667254	3R_16667254_INS [dm3] 3R_20841532_INS [dm6]	T	TT	1.557e^-4	0.873	UPSTREAM CG15695 INTERGENIC
2L	15072500	2L_15072500_SNP [dm3] 2L_15072500_SNP [dm6]	T	C	1.566e^-4	0.873	NON_SYNONYMOUS_CODING vas DOWNSTREAM vas
3L	15165036	3L_15165036_SNP [dm3] 3L_15171936_SNP [dm6]	T	C	1.571e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	15017008	2R_15017008_SNP [dm3] 2R_19129503_SNP [dm6]	T	A	1.571e^-4	0.873	UPSTREAM botv & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3R	9631654	3R_9631654_SNP [dm3] 3R_13805932_SNP [dm6]	C	T	1.572e^-4	0.873	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	21730724	3R_21730724_SNP [dm3] 3R_25905002_SNP [dm6]	G	A	1.572e^-4	0.873	DOWNSTREAM CG31089 & 1 other INTRON CR43259
2L	5155261	2L_5155261_SNP [dm3] 2L_5155261_SNP [dm6]	T	C	1.573e^-4	0.873	INTRON Msp300	TF binding site mE1_TFBS_cad
2R	11215610	2R_11215610_SNP [dm3] 2R_15328105_SNP [dm6]	C	A	1.573e^-4	0.873	NON_SYNONYMOUS_CODING CG8160
X	6332863	X_6332863_SNP [dm3] X_6438830_SNP [dm6]	C	G	1.581e^-4	0.873	INTRON CG42340
3L	15776604	3L_15776604_SNP [dm3] 3L_15783504_SNP [dm6]	A	T	1.590e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	17445815	2L_17445815_SNP [dm3] 2L_17445815_SNP [dm6]	C	T	1.605e^-4	0.873	UPSTREAM dl INTRON dl	TF binding site mE1_TFBS_sbb
3R	13696658	3R_13696658_SNP [dm3] 3R_17870936_SNP [dm6]	T	G	1.606e^-4	0.873	UTR_3_PRIME tinc
3R	11464759	3R_11464759_SNP [dm3] 3R_15639037_SNP [dm6]	C	T	1.614e^-4	0.873	DOWNSTREAM CG43336 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	7224158	3R_7224158_SNP [dm3] 3R_11398436_SNP [dm6]	G	C	1.636e^-4	0.873	UTR_3_PRIME pros
X	22232719	X_22232719_SNP [dm3] X_22830883_SNP [dm6]	A	G	1.642e^-4	0.873	INTRON fog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	11886467	2L_11886467_SNP [dm3] 2L_11886467_SNP [dm6]	C	A	1.648e^-4	0.873	INTRON Pde1c
3L	13193852	3L_13193852_SNP [dm3] 3L_13200752_SNP [dm6]	T	C	1.651e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	14501938	3L_14501938_SNP [dm3] 3L_14508838_SNP [dm6]	T	G	1.651e^-4	0.873	NON_SYNONYMOUS_CODING bbg
2R	2919613	2R_2919613_SNP [dm3] 2R_7032108_SNP [dm6]	C	G	1.658e^-4	0.873	INTRON Tsp42Eg
3L	6363408	3L_6363408_SNP [dm3] 3L_6370308_SNP [dm6]	G	T	1.658e^-4	0.873	EXON CR45419
3L	3908358	3L_3908358_SNP [dm3] 3L_3908358_SNP [dm6]	G	A	1.665e^-4	0.873	SYNONYMOUS_CODING mge UTR_3_PRIME mge DOWNSTREAM ida
3R	14112794	3R_14112794_SNP [dm3] 3R_18287072_SNP [dm6]	G	T	1.666e^-4	0.873	DOWNSTREAM CG8064 INTRON CG7131	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9305255	2L_9305255_SNP [dm3] 2L_9305255_SNP [dm6]	A	C	1.667e^-4	0.873	UPSTREAM CR42844 INTERGENIC
3L	21329260	3L_21329260_SNP [dm3] 3L_21336160_SNP [dm6]	A	G	1.668e^-4	0.873	SYNONYMOUS_CODING CG7338	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	14503606	3L_14503606_DEL [dm3] 3L_14510506_DEL [dm6]	TACTAGGC	T	1.668e^-4	0.873	UPSTREAM bbg INTRON bbg
3R	18116618	3R_18116618_SNP [dm3] 3R_22290896_SNP [dm6]	C	T	1.675e^-4	0.873	INTRON SKIP
2L	17378496	2L_17378496_SNP [dm3] 2L_17378496_SNP [dm6]	G	A	1.675e^-4	0.873	INTRON Lrch	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_zfh1
3R	14671707	3R_14671707_SNP [dm3] 3R_18845985_SNP [dm6]	C	G	1.681e^-4	0.873	INTRON CG18208
2R	6131933	2R_6131933_SNP [dm3] 2R_10244428_SNP [dm6]	T	G	1.682e^-4	0.873	SYNONYMOUS_CODING Hdc
3L	10244196	3L_10244196_DEL [dm3] 3L_10251096_DEL [dm6]	AAGTA	A	1.683e^-4	0.873	INTERGENIC
3L	14503567	3L_14503567_SNP [dm3] 3L_14510467_SNP [dm6]	C	G	1.686e^-4	0.873	UPSTREAM bbg INTRON bbg
2L	9305293	2L_9305293_SNP [dm3] 2L_9305293_SNP [dm6]	A	T	1.686e^-4	0.873	UPSTREAM CR42844 INTERGENIC
2L	5410250	2L_5410250_SNP [dm3] 2L_5410250_SNP [dm6]	G	A	1.689e^-4	0.873	INTRON H15	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	19702893	X_19702893_SNP [dm3] X_19808860_SNP [dm6]	A	C	1.697e^-4	0.873	INTERGENIC
3L	15286657	3L_15286657_SNP [dm3] 3L_15293557_SNP [dm6]	C	T	1.707e^-4	0.873	INTERGENIC
X	19614197	X_19614197_INS [dm3] X_19720164_INS [dm6]	T	TGTGT	1.714e^-4	0.873	INTRON CG12531
2L	3453520	2L_3453520_SNP [dm3] 2L_3453520_SNP [dm6]	G	A	1.718e^-4	0.873	NON_SYNONYMOUS_CODING CG12795 DOWNSTREAM Cog3	TF binding site mE1_TFBS_cad
3R	10389755	3R_10389755_DEL [dm3] 3R_14564033_DEL [dm6]	ATTTTTGGTTTCCCCT...	A	1.720e^-4	0.873	DOWNSTREAM CG8087 INTERGENIC
3R	8388087	3R_8388087_SNP [dm3] 3R_12562365_SNP [dm6]	T	C	1.721e^-4	0.873	UTR_5_PRIME Octbeta2R INTRON Octbeta2R
2L	11886785	2L_11886785_SNP [dm3] 2L_11886785_SNP [dm6]	G	T	1.725e^-4	0.873	INTRON Pde1c
3L	15183196	3L_15183196_SNP [dm3] 3L_15190096_SNP [dm6]	A	G	1.726e^-4	0.873	UPSTREAM CR44562 INTERGENIC
X	6823113	X_6823113_SNP [dm3] X_6929080_SNP [dm6]	C	T	1.730e^-4	0.873	INTRON CG14431
X	22232882	X_22232882_INS [dm3] X_22831046_INS [dm6]	A	AGGTTAGC	1.731e^-4	0.873	INTRON fog	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	10392293	3R_10392293_SNP [dm3] 3R_14566571_SNP [dm6]	T	C	1.732e^-4	0.873	UTR_3_PRIME CG31313 DOWNSTREAM CG31313 & 1 other
3L	15286515	3L_15286515_SNP [dm3] 3L_15293415_SNP [dm6]	A	G	1.737e^-4	0.873	INTERGENIC
3L	3677565	3L_3677565_SNP [dm3] 3L_3677565_SNP [dm6]	T	C	1.748e^-4	0.873	INTERGENIC
2R	20793061	2R_20793061_SNP [dm3] 2R_24905538_SNP [dm6]	G	A	1.754e^-4	0.873	SYNONYMOUS_CODING NaCP60E UTR_3_PRIME NaCP60E
3R	10404809	3R_10404809_SNP [dm3] 3R_14579087_SNP [dm6]	A	G	1.763e^-4	0.873	INTRON stumps
X	15975951	X_15975951_SNP [dm3] X_16081918_SNP [dm6]	C	T	1.768e^-4	0.873	SYNONYMOUS_CODING Tob UPSTREAM mir-4958
X	22222015	X_22222015_INS [dm3] X_22820179_INS [dm6]	C	CCGAAA	1.777e^-4	0.873	INTERGENIC
2R	13168197	2R_13168197_SNP [dm3] 2R_17280692_SNP [dm6]	A	G	1.780e^-4	0.873	INTRON mbl
2R	2773614	2R_2773614_SNP [dm3] 2R_6886109_SNP [dm6]	C	T	1.788e^-4	0.873	UPSTREAM Spn42De INTRON Spn42De	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	15502101	2L_15502101_MNP [dm3] 2L_15502101_MNP [dm6]	CTC	TCT	1.791e^-4	0.873	INTRON lace
2L	17887515	2L_17887515_SNP [dm3] 2L_17887515_SNP [dm6]	T	G	1.792e^-4	0.873	INTERGENIC
3L	13778722	3L_13778722_SNP [dm3] 3L_13785622_SNP [dm6]	C	T	1.794e^-4	0.873	INTRON bru-3
X	5715660	X_5715660_SNP [dm3] X_5821627_SNP [dm6]	G	C	1.801e^-4	0.873	INTRON CG15765	TF binding site mE1_TFBS_chinmo
3R	10388350	3R_10388350_SNP [dm3] 3R_14562628_SNP [dm6]	C	T	1.808e^-4	0.873	SYNONYMOUS_CODING CG14851	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	999174	X_999174_SNP [dm3] X_1105141_SNP [dm6]	C	A	1.808e^-4	0.873	INTRON CG3655
2L	15832502	2L_15832502_SNP [dm3] 2L_15832502_SNP [dm6]	G	C	1.811e^-4	0.873	INTERGENIC
3L	12845216	3L_12845216_SNP [dm3] 3L_12852116_SNP [dm6]	G	A	1.817e^-4	0.873	DOWNSTREAM Wbp2 INTRON Wbp2
2L	12703963	2L_12703963_SNP [dm3] 2L_12703963_SNP [dm6]	C	T	1.823e^-4	0.873	UPSTREAM spict INTRON CG5776	TF binding site mE1_TFBS_sens
2L	17939538	2L_17939538_SNP [dm3] 2L_17939538_SNP [dm6]	A	C	1.825e^-4	0.873	EXON CR44399
X	21172371	X_21172371_SNP [dm3] X_21301344_SNP [dm6]	A	T	1.830e^-4	0.873	INTRON CG1718
2L	15502113	2L_15502113_SNP [dm3] 2L_15502113_SNP [dm6]	A	G	1.833e^-4	0.873	SPLICE_SITE_REGION lace INTRON lace
3L	18549481	3L_18549481_SNP [dm3] 3L_18556381_SNP [dm6]	T	C	1.834e^-4	0.873	INTERGENIC
3L	8806463	3L_8806463_SNP [dm3] 3L_8813363_SNP [dm6]	A	T	1.834e^-4	0.873	INTERGENIC
2L	3630986	2L_3630986_SNP [dm3] 2L_3630986_SNP [dm6]	A	T	1.844e^-4	0.873	INTRON for	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	17445379	2L_17445379_SNP [dm3] 2L_17445379_SNP [dm6]	C	T	1.845e^-4	0.873	UTR_5_PRIME dl INTRON dl
3L	14504600	3L_14504600_SNP [dm3] 3L_14511500_SNP [dm6]	G	A	1.849e^-4	0.873	SYNONYMOUS_CODING bbg	TF binding site mE1_TFBS_sens
2R	8620667	2R_8620667_SNP [dm3] 2R_12733162_SNP [dm6]	C	T	1.851e^-4	0.873	INTRON CG42663	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	17595842	3L_17595842_DEL [dm3] 3L_17602742_DEL [dm6]	TT	T	1.854e^-4	0.873	UTR_5_PRIME Eip74EF
2L	2516673	2L_2516673_SNP [dm3] 2L_2516673_SNP [dm6]	A	G	1.855e^-4	0.873	DOWNSTREAM CG3528 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	12931572	3R_12931572_DEL [dm3] 3R_17105850_DEL [dm6]	CG	T	1.870e^-4	0.873	INTRON cher	TF binding site mE1_TFBS_cad
3R	18040466	3R_18040466_SNP [dm3] 3R_22214744_SNP [dm6]	G	C	1.874e^-4	0.873	NON_SYNONYMOUS_CODING Gld2 INTRON SKIP	TF binding site mE1_TFBS_inv
3L	13589336	3L_13589336_SNP [dm3] 3L_13596236_SNP [dm6]	C	T	1.884e^-4	0.873	INTRON bru-3
3L	6583984	3L_6583984_SNP [dm3] 3L_6590884_SNP [dm6]	T	G	1.888e^-4	0.873	INTRON CG18769
2L	21996376	2L_21996376_SNP [dm3] 2L_21996376_SNP [dm6]	A	T	1.899e^-4	0.873	INTERGENIC
3L	14501929	3L_14501929_SNP [dm3] 3L_14508829_SNP [dm6]	T	G	1.902e^-4	0.873	NON_SYNONYMOUS_CODING bbg
3L	8977985	3L_8977985_SNP [dm3] 3L_8984885_SNP [dm6]	T	C	1.907e^-4	0.873	NON_SYNONYMOUS_CODING Galk
2R	15002346	2R_15002346_SNP [dm3] 2R_19114841_SNP [dm6]	T	C	1.923e^-4	0.873	INTRON 5-HT1A
2R	5885091	2R_5885091_DEL [dm3] 2R_9997586_DEL [dm6]	GCATGG	G	1.926e^-4	0.873	INTRON Pka-R2
2R	20778041	2R_20778041_SNP [dm3] 2R_24890518_SNP [dm6]	G	A	1.931e^-4	0.873	NON_SYNONYMOUS_CODING Ance-5	TF binding site mE1_TFBS_sens
3R	23372802	3R_23372802_SNP [dm3] 3R_27547080_SNP [dm6]	A	T	1.931e^-4	0.873	DOWNSTREAM Klp98A INTRON Gr98d	TF binding site mE1_TFBS_bab1
3L	13592894	3L_13592894_SNP [dm3] 3L_13599794_SNP [dm6]	A	G	1.948e^-4	0.873	INTRON bru-3 EXON CR45120
3R	8154053	3R_8154053_SNP [dm3] 3R_12328331_SNP [dm6]	C	T	1.953e^-4	0.873	UPSTREAM CR45583 DOWNSTREAM CR45584 INTERGENIC
3L	7820531	3L_7820531_SNP [dm3] 3L_7827431_SNP [dm6]	A	T	1.956e^-4	0.873	INTRON Pdp1
3L	15776646	3L_15776646_SNP [dm3] 3L_15783546_SNP [dm6]	G	C	1.958e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	15907874	2L_15907874_SNP [dm3] 2L_15907874_SNP [dm6]	A	G	1.961e^-4	0.873	INTRON beat-Ib
2L	7753709	2L_7753709_SNP [dm3] 2L_7753709_SNP [dm6]	A	C	1.977e^-4	0.873	UPSTREAM CG7203 & 1 other DOWNSTREAM CR45718 INTERGENIC
2L	7239008	2L_7239008_SNP [dm3] 2L_7239008_SNP [dm6]	C	T	1.980e^-4	0.873	INTRON Ndae1
2L	6841084	2L_6841084_SNP [dm3] 2L_6841084_SNP [dm6]	C	A	1.987e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3280205	2L_3280205_SNP [dm3] 2L_3280205_SNP [dm6]	G	A	1.992e^-4	0.873	UPSTREAM CG3332 INTRON CG3332
2R	7532863	2R_7532863_SNP [dm3] 2R_11645358_SNP [dm6]	C	G	1.995e^-4	0.873	INTRON CG9003	TF binding site BDTNP1_TFBS_dl
2L	2630437	2L_2630437_SNP [dm3] 2L_2630437_SNP [dm6]	G	A	1.999e^-4	0.873	INTERGENIC
X	19667125	X_19667125_SNP [dm3] X_19773092_SNP [dm6]	C	T	2.002e^-4	0.873	INTRON vfl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2828244	2L_2828244_SNP [dm3] 2L_2828244_SNP [dm6]	A	T	2.003e^-4	0.873	INTRON Duox
2L	15775835	2L_15775835_SNP [dm3] 2L_15775835_SNP [dm6]	T	C	2.008e^-4	0.873	DOWNSTREAM CG43760 INTERGENIC
X	6330658	X_6330658_SNP [dm3] X_6436625_SNP [dm6]	A	C	2.016e^-4	0.873	INTRON CG42340
2L	17453284	2L_17453284_SNP [dm3] 2L_17453284_SNP [dm6]	G	T	2.023e^-4	0.873	NON_SYNONYMOUS_CODING CG5050 DOWNSTREAM CG6639
3L	3119774	3L_3119774_SNP [dm3] 3L_3119774_SNP [dm6]	C	G	2.026e^-4	0.873	INTRON prominin-like
2L	12703954	2L_12703954_SNP [dm3] 2L_12703954_SNP [dm6]	A	C	2.032e^-4	0.873	UPSTREAM spict INTRON CG5776	TF binding site mE1_TFBS_sens
3L	1847781	3L_1847781_SNP [dm3] 3L_1847781_SNP [dm6]	G	A	2.041e^-4	0.873	INTERGENIC
2L	7558895	2L_7558895_SNP [dm3] 2L_7558895_SNP [dm6]	A	G	2.041e^-4	0.873	INTRON RapGAP1
X	15156873	X_15156873_SNP [dm3] X_15262840_SNP [dm6]	A	T	2.046e^-4	0.873	INTERGENIC
2L	7753747	2L_7753747_SNP [dm3] 2L_7753747_SNP [dm6]	T	C	2.052e^-4	0.873	UPSTREAM CG7203 & 1 other DOWNSTREAM CR45718 INTERGENIC
2L	19209359	2L_19209359_SNP [dm3] 2L_19209359_SNP [dm6]	G	T	2.058e^-4	0.873	DOWNSTREAM drl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6837660	X_6837660_SNP [dm3] X_6943627_SNP [dm6]	A	G	2.068e^-4	0.873	INTRON CG14431
3L	14499513	3L_14499513_SNP [dm3] 3L_14506413_SNP [dm6]	G	T	2.069e^-4	0.873	INTRON bbg
3L	7820272	3L_7820272_SNP [dm3] 3L_7827172_SNP [dm6]	T	A	2.071e^-4	0.873	UTR_5_PRIME Pdp1 INTRON Pdp1
2R	10892694	2R_10892694_SNP [dm3] 2R_15005189_SNP [dm6]	A	G	2.073e^-4	0.873	INTERGENIC
3L	9552322	3L_9552322_SNP [dm3] 3L_9559222_SNP [dm6]	A	T	2.080e^-4	0.873	INTRON CG42673
2R	2794783	2R_2794783_SNP [dm3] 2R_6907278_SNP [dm6]	C	A	2.092e^-4	0.873	INTRON CG30158	TF binding site mE1_TFBS_chinmo
2L	12703984	2L_12703984_SNP [dm3] 2L_12703984_SNP [dm6]	A	G	2.100e^-4	0.873	UPSTREAM spict INTRON CG5776	TF binding site mE1_TFBS_sens
3R	17070868	3R_17070868_SNP [dm3] 3R_21245146_SNP [dm6]	C	T	2.101e^-4	0.873	SYNONYMOUS_CODING CG5892
2L	5875110	2L_5875110_SNP [dm3] 2L_5875110_SNP [dm6]	T	G	2.102e^-4	0.873	INTRON rau
2L	8789505	2L_8789505_SNP [dm3] 2L_8789505_SNP [dm6]	A	G	2.105e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14678570	2R_14678570_SNP [dm3] 2R_18791065_SNP [dm6]	C	T	2.114e^-4	0.873	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18271931	3L_18271931_SNP [dm3] 3L_18278831_SNP [dm6]	C	A	2.120e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	11464333	3L_11464333_SNP [dm3] 3L_11471233_SNP [dm6]	G	A	2.124e^-4	0.873	INTERGENIC
2R	13558221	2R_13558221_SNP [dm3] 2R_17670716_SNP [dm6]	T	C	2.126e^-4	0.873	UTR_3_PRIME CG30109 UPSTREAM CR44404 DOWNSTREAM CG30108 & 1 other
3L	15165031	3L_15165031_SNP [dm3] 3L_15171931_SNP [dm6]	G	A	2.126e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18030006	2R_18030006_SNP [dm3] 2R_22142501_SNP [dm6]	T	C	2.129e^-4	0.873	INTRON a	TF binding site BDTNP1_TFBS_twi
2R	3011053	2R_3011053_SNP [dm3] 2R_7123548_SNP [dm6]	C	T	2.134e^-4	0.873	INTRON esn	TF binding site mE1_TFBS_cad
3L	4028320	3L_4028320_SNP [dm3] 3L_4028320_SNP [dm6]	T	C	2.136e^-4	0.873	SYNONYMOUS_CODING Gr64a UPSTREAM Gr64b & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	18640287	3R_18640287_SNP [dm3] 3R_22814565_SNP [dm6]	T	G	2.143e^-4	0.873	UTR_3_PRIME CG13840
3R	15434123	3R_15434123_SNP [dm3] 3R_19608401_SNP [dm6]	A	G	2.145e^-4	0.873	NON_SYNONYMOUS_CODING CG17751
2R	2775208	2R_2775208_SNP [dm3] 2R_6887703_SNP [dm6]	C	A	2.157e^-4	0.873	INTRON Spn42De
3L	8801931	3L_8801931_SNP [dm3] 3L_8808831_SNP [dm6]	T	C	2.162e^-4	0.873	SYNONYMOUS_CODING CG13308 DOWNSTREAM CG32024
2R	14604146	2R_14604146_SNP [dm3] 2R_18716641_SNP [dm6]	C	A	2.162e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	5702508	3L_5702508_SNP [dm3] 3L_5709408_SNP [dm6]	A	G	2.163e^-4	0.873	INTRON sif
3L	8268501	3L_8268501_SNP [dm3] 3L_8275401_SNP [dm6]	G	A	2.164e^-4	0.873	INTRON Dscam4
3L	13785599	3L_13785599_SNP [dm3] 3L_13792499_SNP [dm6]	C	G	2.169e^-4	0.873	INTRON bru-3
3L	15183165	3L_15183165_SNP [dm3] 3L_15190065_SNP [dm6]	G	A	2.171e^-4	0.873	UPSTREAM CR44562 INTERGENIC
3L	15436885	3L_15436885_SNP [dm3] 3L_15443785_SNP [dm6]	A	G	2.179e^-4	0.873	INTERGENIC
X	5715663	X_5715663_SNP [dm3] X_5821630_SNP [dm6]	T	C	2.193e^-4	0.873	INTRON CG15765	TF binding site mE1_TFBS_chinmo
3R	6265568	3R_6265568_SNP [dm3] 3R_10439846_SNP [dm6]	T	A	2.200e^-4	0.873	INTERGENIC
2L	7094215	2L_7094215_SNP [dm3] 2L_7094215_SNP [dm6]	A	G	2.217e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	11962081	2R_11962081_SNP [dm3] 2R_16074576_SNP [dm6]	G	A	2.218e^-4	0.873	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	21174494	X_21174494_SNP [dm3] X_21303467_SNP [dm6]	C	T	2.245e^-4	0.873	UPSTREAM CG1718 DOWNSTREAM tRNA:CR32520 INTRON CG1718
3L	19578260	3L_19578260_SNP [dm3] 3L_19585160_SNP [dm6]	G	A	2.248e^-4	0.873	UTR_3_PRIME CG9231 UPSTREAM Shal	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	10993766	2R_10993766_SNP [dm3] 2R_15106261_SNP [dm6]	C	A	2.264e^-4	0.873	INTERGENIC
3L	13592895	3L_13592895_SNP [dm3] 3L_13599795_SNP [dm6]	C	G	2.264e^-4	0.873	INTRON bru-3 EXON CR45120
3R	21705381	3R_21705381_SNP [dm3] 3R_25879659_SNP [dm6]	A	T	2.265e^-4	0.873	INTRON Tsp96F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	20566818	X_20566818_SNP [dm3] X_20695791_SNP [dm6]	C	A	2.266e^-4	0.873	INTRON run	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	22232881	X_22232881_SNP [dm3] X_22831045_SNP [dm6]	T	A	2.266e^-4	0.873	INTRON fog	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	11654571	3L_11654571_SNP [dm3] 3L_11661471_SNP [dm6]	T	C	2.269e^-4	0.873	INTRON CG32085
3L	9615480	3L_9615480_SNP [dm3] 3L_9622380_SNP [dm6]	C	T	2.271e^-4	0.873	INTRON LanB2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	22232885	X_22232885_SNP [dm3] X_22831049_SNP [dm6]	A	T	2.279e^-4	0.873	INTRON fog	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	16982403	3L_16982403_SNP [dm3] 3L_16989303_SNP [dm6]	A	G	2.281e^-4	0.873	INTRON Exn
3L	6749616	3L_6749616_SNP [dm3] 3L_6756516_SNP [dm6]	C	A	2.304e^-4	0.873	UPSTREAM CG10103 DOWNSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	14058399	3R_14058399_SNP [dm3] 3R_18232677_SNP [dm6]	A	G	2.305e^-4	0.873	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14170867	3L_14170867_SNP [dm3] 3L_14177767_SNP [dm6]	C	A	2.316e^-4	0.873	START_GAINED D UTR_5_PRIME D UPSTREAM D	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	19038208	3R_19038208_SNP [dm3] 3R_23212486_SNP [dm6]	C	T	2.318e^-4	0.873	INTRON cnc	TF binding site BDTNP1_TFBS_dl
2R	12261056	2R_12261056_SNP [dm3] 2R_16373551_SNP [dm6]	C	A	2.325e^-4	0.873	INTERGENIC
2R	2778850	2R_2778850_SNP [dm3] 2R_6891345_SNP [dm6]	T	A	2.330e^-4	0.873	UPSTREAM CG30158 INTERGENIC
X	22232851	X_22232851_DEL [dm3] X_22831015_DEL [dm6]	AAATTTA	A	2.331e^-4	0.873	INTRON fog	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	15002339	2R_15002339_SNP [dm3] 2R_19114834_SNP [dm6]	T	A	2.332e^-4	0.873	INTRON 5-HT1A
3L	4319184	3L_4319184_SNP [dm3] 3L_4319184_SNP [dm6]	G	T	2.337e^-4	0.873	DOWNSTREAM Claspin INTRON CG32250	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8267118	3L_8267118_SNP [dm3] 3L_8274018_SNP [dm6]	C	T	2.340e^-4	0.873	INTRON Dscam4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18467653	X_18467653_SNP [dm3] X_18573620_SNP [dm6]	C	G	2.341e^-4	0.873	DOWNSTREAM Bx INTERGENIC
3L	15266588	3L_15266588_SNP [dm3] 3L_15273488_SNP [dm6]	T	A	2.343e^-4	0.873	INTERGENIC
3L	7502592	3L_7502592_DEL [dm3] 3L_7509492_DEL [dm6]	GCTGCGTGG	G	2.344e^-4	0.873	INTERGENIC
2L	12411837	2L_12411837_SNP [dm3] 2L_12411837_SNP [dm6]	T	A	2.357e^-4	0.873	INTRON vir-1
3R	16264435	3R_16264435_SNP [dm3] 3R_20438713_SNP [dm6]	C	T	2.363e^-4	0.873	INTRON Gfrl
2R	13018230	2R_13018230_SNP [dm3] 2R_17130725_SNP [dm6]	T	C	2.366e^-4	0.873	DOWNSTREAM CR45273 & 1 other INTERGENIC
X	8897825	X_8897825_INS [dm3] X_9003792_INS [dm6]	C	CGGCGGCATTCGTT...	2.367e^-4	0.873	INTRON rdgA & 1 other
3L	18218871	3L_18218871_SNP [dm3] 3L_18225771_SNP [dm6]	A	G	2.372e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	6167713	X_6167713_SNP [dm3] X_6273680_SNP [dm6]	C	T	2.379e^-4	0.873	SYNONYMOUS_CODING Spt6	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8806801	3L_8806801_SNP [dm3] 3L_8813701_SNP [dm6]	A	C	2.379e^-4	0.873	INTERGENIC
2R	13663125	2R_13663125_SNP [dm3] 2R_17775620_SNP [dm6]	A	G	2.383e^-4	0.873	SYNONYMOUS_CODING fab1 UTR_3_PRIME CG33981
3R	9951721	3R_9951721_SNP [dm3] 3R_14125999_SNP [dm6]	A	C	2.392e^-4	0.873	UPSTREAM 140up INTRON RpII140	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13592885	3L_13592885_SNP [dm3] 3L_13599785_SNP [dm6]	G	T	2.392e^-4	0.873	INTRON bru-3 EXON CR45120
2R	15899752	2R_15899752_SNP [dm3] 2R_20012247_SNP [dm6]	G	A	2.392e^-4	0.873	INTERGENIC
X	17874951	X_17874951_SNP [dm3] X_17980918_SNP [dm6]	C	G	2.396e^-4	0.873	INTRON Sh
X	9603514	X_9603514_SNP [dm3] X_9709481_SNP [dm6]	G	A	2.401e^-4	0.873	INTERGENIC
3L	12495929	3L_12495929_SNP [dm3] 3L_12502829_SNP [dm6]	C	T	2.402e^-4	0.873	SYNONYMOUS_CODING CG10646 DOWNSTREAM CG10681	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	17445814	2L_17445814_SNP [dm3] 2L_17445814_SNP [dm6]	T	G	2.408e^-4	0.873	UPSTREAM dl INTRON dl	TF binding site mE1_TFBS_sbb
2R	14723727	2R_14723727_INS [dm3] 2R_18836222_INS [dm6]	T	TT	2.409e^-4	0.873	DOWNSTREAM CG15099 INTRON CG15083
X	20566618	X_20566618_SNP [dm3] X_20695591_SNP [dm6]	T	A	2.415e^-4	0.873	INTRON run	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8806788	3L_8806788_SNP [dm3] 3L_8813688_SNP [dm6]	G	A	2.418e^-4	0.873	INTERGENIC
3L	15273803	3L_15273803_SNP [dm3] 3L_15280703_SNP [dm6]	T	A	2.420e^-4	0.873	INTERGENIC
3L	15776654	3L_15776654_SNP [dm3] 3L_15783554_SNP [dm6]	T	A	2.424e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	17453230	2L_17453230_SNP [dm3] 2L_17453230_SNP [dm6]	T	C	2.426e^-4	0.873	SYNONYMOUS_CODING CG5050
2R	20718038	2R_20718038_SNP [dm3] 2R_24830515_SNP [dm6]	A	G	2.428e^-4	0.873	INTRON Dll	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	21931828	X_21931828_SNP [dm3] X_22529992_SNP [dm6]	G	A	2.429e^-4	0.873	UTR_5_PRIME S6kII INTRON CG17600	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3L	15921217	3L_15921217_SNP [dm3] 3L_15928117_SNP [dm6]	A	G	2.429e^-4	0.873	SYNONYMOUS_CODING Pka-C3
3R	18681827	3R_18681827_SNP [dm3] 3R_22856105_SNP [dm6]	C	T	2.433e^-4	0.873	INTERGENIC
3R	19143667	3R_19143667_SNP [dm3] 3R_23317945_SNP [dm6]	C	A	2.437e^-4	0.873	INTRON pnt
3L	9132767	3L_9132767_SNP [dm3] 3L_9139667_SNP [dm6]	T	C	2.438e^-4	0.873	INTRON nwk
X	9740455	X_9740455_SNP [dm3] X_9846422_SNP [dm6]	C	T	2.441e^-4	0.873	INTRON CG32698
3R	21705337	3R_21705337_SNP [dm3] 3R_25879615_SNP [dm6]	T	C	2.457e^-4	0.873	INTRON Tsp96F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	14544138	3L_14544138_INS [dm3] 3L_14551038_INS [dm6]	A	AGA	2.460e^-4	0.873	UPSTREAM CG9238 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
3L	8159416	3L_8159416_SNP [dm3] 3L_8166316_SNP [dm6]	A	C	2.475e^-4	0.873	UPSTREAM CG13675 INTERGENIC
X	15580981	X_15580981_SNP [dm3] X_15686948_SNP [dm6]	C	T	2.477e^-4	0.873	SPLICE_SITE_REGION CG15599 SYNONYMOUS_CODING CG15599	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2R	15016975	2R_15016975_SNP [dm3] 2R_19129470_SNP [dm6]	T	A	2.479e^-4	0.873	UPSTREAM botv & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3L	9931797	3L_9931797_SNP [dm3] 3L_9938697_SNP [dm6]	A	C	2.483e^-4	0.873	INTRON CG34356
3R	21705356	3R_21705356_SNP [dm3] 3R_25879634_SNP [dm6]	A	T	2.484e^-4	0.873	INTRON Tsp96F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	15776660	3L_15776660_SNP [dm3] 3L_15783560_SNP [dm6]	A	C	2.490e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	3280667	2L_3280667_SNP [dm3] 2L_3280667_SNP [dm6]	C	A	2.492e^-4	0.873	UPSTREAM CG3332 INTERGENIC
2R	2775207	2R_2775207_SNP [dm3] 2R_6887702_SNP [dm6]	A	G	2.493e^-4	0.873	INTRON Spn42De
3L	16327248	3L_16327248_DEL [dm3] 3L_16334148_DEL [dm6]	CA	C	2.494e^-4	0.873	DOWNSTREAM CG13056 INTERGENIC
3L	15776619	3L_15776619_SNP [dm3] 3L_15783519_SNP [dm6]	T	A	2.495e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	14501859	3L_14501859_SNP [dm3] 3L_14508759_SNP [dm6]	C	T	2.500e^-4	0.873	NON_SYNONYMOUS_CODING bbg
2L	16610936	2L_16610936_INS [dm3] 2L_16610936_INS [dm6]	C	CAATAC	2.503e^-4	0.873	DOWNSTREAM CG4631 INTRON CG42389
3R	18596128	3R_18596128_SNP [dm3] 3R_22770406_SNP [dm6]	A	G	2.503e^-4	0.873	UPSTREAM CG43092 & 1 other DOWNSTREAM CG43094 & 1 other INTRON Usp12-46 & 1 other
3R	18900497	3R_18900497_SNP [dm3] 3R_23074775_SNP [dm6]	T	C	2.504e^-4	0.873	INTRON CG13830
3L	8808283	3L_8808283_SNP [dm3] 3L_8815183_SNP [dm6]	C	T	2.506e^-4	0.873	INTERGENIC
2L	7556691	2L_7556691_SNP [dm3] 2L_7556691_SNP [dm6]	C	T	2.516e^-4	0.873	INTRON RapGAP1
3L	14507327	3L_14507327_SNP [dm3] 3L_14514227_SNP [dm6]	A	C	2.519e^-4	0.873	INTRON bbg	enhancer mE1_CBP_Enhancers TF binding site mE1_TFBS_bab1
3R	14112708	3R_14112708_SNP [dm3] 3R_18286986_SNP [dm6]	A	G	2.520e^-4	0.873	SYNONYMOUS_CODING CG7131 DOWNSTREAM CG8064	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15776631	3L_15776631_INS [dm3] 3L_15783531_INS [dm6]	T	AA	2.523e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	2436530	2L_2436530_SNP [dm3] 2L_2436530_SNP [dm6]	T	G	2.523e^-4	0.873	INTRON dpp	TF binding site mE1_TFBS_sens
3R	19766167	3R_19766167_SNP [dm3] 3R_23940445_SNP [dm6]	A	G	2.535e^-4	0.873	INTRON Gdh
3L	14618460	3L_14618460_SNP [dm3] 3L_14625360_SNP [dm6]	T	A	2.535e^-4	0.873	INTRON CG9628	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	12966164	X_12966164_DEL [dm3] X_13072131_DEL [dm6]	TT	T	2.538e^-4	0.873	INTRON rad
3R	8388090	3R_8388090_SNP [dm3] 3R_12562368_SNP [dm6]	G	T	2.541e^-4	0.873	UTR_5_PRIME Octbeta2R INTRON Octbeta2R
2L	13385589	2L_13385589_SNP [dm3] 2L_13385589_SNP [dm6]	G	T	2.547e^-4	0.873	UTR_3_PRIME loqs UPSTREAM CR44599 DOWNSTREAM CG9293
3L	9614565	3L_9614565_SNP [dm3] 3L_9621465_SNP [dm6]	C	G	2.553e^-4	0.873	SYNONYMOUS_CODING LanB2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	15899742	2R_15899742_SNP [dm3] 2R_20012237_SNP [dm6]	C	T	2.555e^-4	0.873	INTERGENIC
2R	8378489	2R_8378489_SNP [dm3] 2R_12490984_SNP [dm6]	T	C	2.558e^-4	0.873	INTRON fdl
3R	12004064	3R_12004064_SNP [dm3] 3R_16178342_SNP [dm6]	T	C	2.562e^-4	0.873	INTRON CG8925	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13696214	3R_13696214_SNP [dm3] 3R_17870492_SNP [dm6]	A	C	2.566e^-4	0.873	SYNONYMOUS_CODING tinc UTR_3_PRIME tinc	TF binding site mE1_TFBS_chinmo
3L	4387932	3L_4387932_SNP [dm3] 3L_4387932_SNP [dm6]	C	T	2.567e^-4	0.873	INTRON slow
3L	13883827	3L_13883827_SNP [dm3] 3L_13890727_SNP [dm6]	T	C	2.571e^-4	0.873	INTRON dysc
3R	8154174	3R_8154174_SNP [dm3] 3R_12328452_SNP [dm6]	T	C	2.575e^-4	0.873	UPSTREAM CR45583 DOWNSTREAM CR45584 INTERGENIC
3R	15378377	3R_15378377_SNP [dm3] 3R_19552655_SNP [dm6]	C	T	2.581e^-4	0.873	INTRON Dys
X	19388052	X_19388052_SNP [dm3] X_19494019_SNP [dm6]	T	G	2.597e^-4	0.873	NON_SYNONYMOUS_CODING CG12204 DOWNSTREAM CG12203 & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
X	4104788	X_4104788_SNP [dm3] X_4210755_SNP [dm6]	C	T	2.604e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16327222	3L_16327222_SNP [dm3] 3L_16334122_SNP [dm6]	A	G	2.606e^-4	0.873	DOWNSTREAM CG13056 INTERGENIC
2L	7924503	2L_7924503_SNP [dm3] 2L_7924503_SNP [dm6]	C	A	2.607e^-4	0.873	INTRON Snoo
3L	13322178	3L_13322178_INS [dm3] 3L_13329078_INS [dm6]	T	TGAGAGAAAAATT...	2.608e^-4	0.873	UPSTREAM CG14113 INTERGENIC
3L	6063148	3L_6063148_SNP [dm3] 3L_6070048_SNP [dm6]	T	A	2.609e^-4	0.873	INTRON CG42269
3L	13697454	3L_13697454_SNP [dm3] 3L_13704354_SNP [dm6]	C	G	2.613e^-4	0.873	INTRON bru-3
3L	15116338	3L_15116338_SNP [dm3] 3L_15123238_SNP [dm6]	A	G	2.625e^-4	0.873	DOWNSTREAM CG32847 INTRON Cep135 & 1 other
2L	5478418	2L_5478418_SNP [dm3] 2L_5478418_SNP [dm6]	T	A	2.628e^-4	0.873	INTERGENIC
3L	11464332	3L_11464332_SNP [dm3] 3L_11471232_SNP [dm6]	G	A	2.651e^-4	0.873	INTERGENIC
3L	10244268	3L_10244268_SNP [dm3] 3L_10251168_SNP [dm6]	G	C	2.657e^-4	0.873	INTERGENIC
3L	13323790	3L_13323790_SNP [dm3] 3L_13330690_SNP [dm6]	T	A	2.657e^-4	0.873	DOWNSTREAM CG14113 INTERGENIC
3L	14323063	3L_14323063_SNP [dm3] 3L_14329963_SNP [dm6]	T	A	2.659e^-4	0.873	DOWNSTREAM CG13482 INTRON fz	TF binding site mE1_TFBS_cad
X	21132152	X_21132152_SNP [dm3] X_21261125_SNP [dm6]	T	A	2.659e^-4	0.873	INTRON CG32521
3L	12933602	3L_12933602_SNP [dm3] 3L_12940502_SNP [dm6]	A	C	2.665e^-4	0.873	INTERGENIC
2R	10892698	2R_10892698_SNP [dm3] 2R_15005193_SNP [dm6]	G	A	2.668e^-4	0.873	INTERGENIC
2L	2516621	2L_2516621_SNP [dm3] 2L_2516621_SNP [dm6]	T	C	2.671e^-4	0.873	DOWNSTREAM CG3528 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	15116334	3L_15116334_SNP [dm3] 3L_15123234_SNP [dm6]	C	T	2.674e^-4	0.873	DOWNSTREAM CG32847 INTRON Cep135 & 1 other
2L	20438936	2L_20438936_SNP [dm3] 2L_20438936_SNP [dm6]	G	T	2.678e^-4	0.873	UPSTREAM CR43607 INTRON CG31688	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8267211	3L_8267211_INS [dm3] 3L_8274111_INS [dm6]	A	ACCACA	2.679e^-4	0.873	INTRON Dscam4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7306515	3L_7306515_DEL [dm3] 3L_7313415_DEL [dm6]	TT	T	2.684e^-4	0.873	UPSTREAM unc-13-4A INTERGENIC
2R	15899724	2R_15899724_SNP [dm3] 2R_20012219_SNP [dm6]	A	T	2.700e^-4	0.873	INTERGENIC
X	9603557	X_9603557_SNP [dm3] X_9709524_SNP [dm6]	C	T	2.708e^-4	0.873	INTERGENIC
X	6837661	X_6837661_SNP [dm3] X_6943628_SNP [dm6]	G	A	2.713e^-4	0.873	INTRON CG14431
3R	14117137	3R_14117137_SNP [dm3] 3R_18291415_SNP [dm6]	T	C	2.714e^-4	0.873	SYNONYMOUS_CODING l_3_05822	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5389069	3L_5389069_SNP [dm3] 3L_5395969_SNP [dm6]	G	T	2.715e^-4	0.873	INTERGENIC
3R	24794792	3R_24794792_SNP [dm3] 3R_28969070_SNP [dm6]	T	C	2.716e^-4	0.873	INTRON CG14521
X	19388053	X_19388053_SNP [dm3] X_19494020_SNP [dm6]	T	C	2.719e^-4	0.873	SYNONYMOUS_CODING CG12204 DOWNSTREAM CG12203 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo
3R	16083721	3R_16083721_SNP [dm3] 3R_20257999_SNP [dm6]	T	C	2.719e^-4	0.873	INTRON cic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA
X	7728862	X_7728862_INS [dm3] X_7834829_INS [dm6]	C	CAATCCT	2.727e^-4	0.873	INTRON CG1402
3L	11214859	3L_11214859_SNP [dm3] 3L_11221759_SNP [dm6]	G	A	2.745e^-4	0.873	INTRON CG42671
3R	7979671	3R_7979671_SNP [dm3] 3R_12153949_SNP [dm6]	T	A	2.748e^-4	0.873	INTRON dpr15
3R	18596131	3R_18596131_SNP [dm3] 3R_22770409_SNP [dm6]	T	C	2.751e^-4	0.873	UPSTREAM CG43092 & 1 other DOWNSTREAM CG43094 & 1 other INTRON Usp12-46 & 1 other
2L	12690125	2L_12690125_SNP [dm3] 2L_12690125_SNP [dm6]	C	T	2.758e^-4	0.873	DOWNSTREAM CG5525 INTERGENIC	TF binding site mE1_TFBS_inv
2L	2937937	2L_2937937_SNP [dm3] 2L_2937937_SNP [dm6]	G	A	2.760e^-4	0.873	INTRON lilli	TF binding site mE1_TFBS_bab1
2L	3607128	2L_3607128_SNP [dm3] 2L_3607128_SNP [dm6]	T	A	2.765e^-4	0.873	UPSTREAM odd INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2L	20691716	2L_20691716_SNP [dm3] 2L_20691716_SNP [dm6]	A	C	2.766e^-4	0.873	INTRON Hr38
3L	6063140	3L_6063140_SNP [dm3] 3L_6070040_SNP [dm6]	T	A	2.770e^-4	0.873	INTRON CG42269
2R	13018237	2R_13018237_SNP [dm3] 2R_17130732_SNP [dm6]	C	T	2.770e^-4	0.873	DOWNSTREAM CR45273 & 1 other INTERGENIC
2L	21976772	2L_21976772_SNP [dm3] 2L_21976772_SNP [dm6]	T	C	2.776e^-4	0.873	INTERGENIC
2L	13152558	2L_13152558_SNP [dm3] 2L_13152558_SNP [dm6]	A	G	2.790e^-4	0.873	INTERGENIC
2R	7532866	2R_7532866_SNP [dm3] 2R_11645361_SNP [dm6]	G	T	2.795e^-4	0.873	INTRON CG9003	TF binding site BDTNP1_TFBS_dl
2R	20026598	2R_20026598_SNP [dm3] 2R_24139075_SNP [dm6]	C	A	2.804e^-4	0.873	UPSTREAM Dat EXON CR44826	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	12779800	3L_12779800_SNP [dm3] 3L_12786700_SNP [dm6]	A	G	2.807e^-4	0.873	SYNONYMOUS_CODING Atg1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9528844	2L_9528844_SNP [dm3] 2L_9528844_SNP [dm6]	G	C	2.809e^-4	0.873	NON_SYNONYMOUS_CODING CG31883 INTRON Oatp30B
3R	16141005	3R_16141005_SNP [dm3] 3R_20315283_SNP [dm6]	C	T	2.810e^-4	0.873	INTRON CG42668
3L	14504611	3L_14504611_SNP [dm3] 3L_14511511_SNP [dm6]	G	A	2.814e^-4	0.873	SYNONYMOUS_CODING bbg	TF binding site mE1_TFBS_sens
3L	6610612	3L_6610612_SNP [dm3] 3L_6617512_SNP [dm6]	G	C	2.815e^-4	0.873	INTRON CG8398
3L	6363409	3L_6363409_SNP [dm3] 3L_6370309_SNP [dm6]	G	T	2.818e^-4	0.873	EXON CR45419
2L	4424389	2L_4424389_SNP [dm3] 2L_4424389_SNP [dm6]	G	A	2.822e^-4	0.873	INTRON CG15431
3L	18271986	3L_18271986_SNP [dm3] 3L_18278886_SNP [dm6]	C	A	2.829e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	12933469	3L_12933469_SNP [dm3] 3L_12940369_SNP [dm6]	G	C	2.829e^-4	0.873	INTERGENIC
2L	12018729	2L_12018729_SNP [dm3] 2L_12018729_SNP [dm6]	T	A	2.832e^-4	0.873	SYNONYMOUS_CODING CG6734	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4388011	3L_4388011_SNP [dm3] 3L_4388011_SNP [dm6]	C	T	2.834e^-4	0.873	INTRON slow
X	16665884	X_16665884_INS [dm3] X_16771851_INS [dm6]	T	TCATATTTGTATATGCTATC...	2.838e^-4	0.873	INTRON if	TF binding site BDTNP1_TFBS_da
2R	9591409	2R_9591409_SNP [dm3] 2R_13703904_SNP [dm6]	G	A	2.844e^-4	0.873	INTRON fas
X	6109426	X_6109426_DEL [dm3] X_6215393_DEL [dm6]	AGTAACATGGCTGAAGAATT...	A	2.845e^-4	0.873	INTERGENIC
3L	2674073	3L_2674073_SNP [dm3] 3L_2674073_SNP [dm6]	C	G	2.868e^-4	0.873	INTRON Fife
X	15976049	X_15976049_SNP [dm3] X_16082016_SNP [dm6]	G	A	2.870e^-4	0.873	UPSTREAM mir-4958 INTRON Tob
3L	9297186	3L_9297186_SNP [dm3] 3L_9304086_SNP [dm6]	C	A	2.874e^-4	0.873	INTERGENIC
2L	5146190	2L_5146190_SNP [dm3] 2L_5146190_SNP [dm6]	C	A	2.878e^-4	0.873	UPSTREAM Msp300 INTRON Msp300	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	21730728	3R_21730728_SNP [dm3] 3R_25905006_SNP [dm6]	A	C	2.884e^-4	0.873	DOWNSTREAM CG31089 & 1 other INTRON CR43259
3L	17168114	3L_17168114_SNP [dm3] 3L_17175014_SNP [dm6]	C	A	2.889e^-4	0.873	INTRON Rbp6
3R	8096650	3R_8096650_SNP [dm3] 3R_12270928_SNP [dm6]	C	T	2.890e^-4	0.873	SYNONYMOUS_CODING CG17738 DOWNSTREAM CR44039 INTRON svp	TF binding site mE1_TFBS_inv
2R	16696850	2R_16696850_SNP [dm3] 2R_20809345_SNP [dm6]	G	A	2.892e^-4	0.873	INTERGENIC
X	18224913	X_18224913_SNP [dm3] X_18330880_SNP [dm6]	G	A	2.899e^-4	0.873	INTRON CG6123
2R	14341304	2R_14341304_SNP [dm3] 2R_18453799_SNP [dm6]	T	G	2.925e^-4	0.873	SYNONYMOUS_CODING CG17669	TF binding site mE1_TFBS_cad
3L	15116337	3L_15116337_SNP [dm3] 3L_15123237_SNP [dm6]	G	A	2.928e^-4	0.873	DOWNSTREAM CG32847 INTRON Cep135 & 1 other
2L	20739296	2L_20739296_SNP [dm3] 2L_20739296_SNP [dm6]	C	T	2.934e^-4	0.873	UTR_3_PRIME Fs_2_Ket INTRON Fs_2_Ket
2L	10151624	2L_10151624_INS [dm3] 2L_10151624_INS [dm6]	A	AACAGCA	2.945e^-4	0.873	INTRON CG44153
X	20909765	X_20909765_SNP [dm3] X_21038738_SNP [dm6]	C	T	2.952e^-4	0.873	SPLICE_SITE_REGION Ntf-2 DOWNSTREAM CG15449 INTRON Ntf-2
2R	6833332	2R_6833332_SNP [dm3] 2R_10945827_SNP [dm6]	C	T	2.953e^-4	0.873	UPSTREAM CR45228 INTERGENIC
3L	14504570	3L_14504570_SNP [dm3] 3L_14511470_SNP [dm6]	C	T	2.954e^-4	0.873	SYNONYMOUS_CODING bbg	TF binding site mE1_TFBS_sens
2L	15153353	2L_15153353_SNP [dm3] 2L_15153353_SNP [dm6]	T	A	2.963e^-4	0.873	INTERGENIC
3R	13738705	3R_13738705_SNP [dm3] 3R_17912983_SNP [dm6]	G	C	2.965e^-4	0.873	DOWNSTREAM CG43445 INTRON Rim
3L	4319033	3L_4319033_SNP [dm3] 3L_4319033_SNP [dm6]	C	T	2.969e^-4	0.873	START_GAINED CG32250 UTR_5_PRIME CG32250 DOWNSTREAM Claspin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6166999	X_6166999_SNP [dm3] X_6272966_SNP [dm6]	G	A	2.983e^-4	0.873	SYNONYMOUS_CODING Spt6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9132751	3L_9132751_INS [dm3] 3L_9139651_INS [dm6]	A	ACTGTCCAGTTTTA...	2.990e^-4	0.873	INTRON nwk
3L	2673857	3L_2673857_SNP [dm3] 3L_2673857_SNP [dm6]	A	C	2.994e^-4	0.873	INTRON Fife
2L	8872259	2L_8872259_SNP [dm3] 2L_8872259_SNP [dm6]	T	C	2.994e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10352728	2L_10352728_SNP [dm3] 2L_10352728_SNP [dm6]	C	T	2.995e^-4	0.873	UPSTREAM CG34367 INTRON CG34367
3L	7159839	3L_7159839_SNP [dm3] 3L_7166739_SNP [dm6]	G	A	3.009e^-4	0.873	SYNONYMOUS_CODING Dscam2
3L	7159938	3L_7159938_SNP [dm3] 3L_7166838_SNP [dm6]	T	C	3.009e^-4	0.873	SYNONYMOUS_CODING Dscam2
3L	15273754	3L_15273754_SNP [dm3] 3L_15280654_SNP [dm6]	C	T	3.011e^-4	0.873	INTERGENIC
2L	7145150	2L_7145150_SNP [dm3] 2L_7145150_SNP [dm6]	T	A	3.015e^-4	0.873	INTRON Pvf3 EXON CR44612	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	4718563	3L_4718563_SNP [dm3] 3L_4718563_SNP [dm6]	C	G	3.017e^-4	0.873	INTRON RhoGEF64C
3R	9904212	3R_9904212_SNP [dm3] 3R_14078490_SNP [dm6]	A	G	3.025e^-4	0.873	INTRON foxo
2R	4395430	2R_4395430_SNP [dm3] 2R_8507925_SNP [dm6]	A	G	3.028e^-4	0.873	INTRON mtt
2R	17856462	2R_17856462_SNP [dm3] 2R_21968957_SNP [dm6]	A	T	3.036e^-4	0.873	INTRON ppk9
3R	10575311	3R_10575311_SNP [dm3] 3R_14749589_SNP [dm6]	C	T	3.039e^-4	0.873	UTR_5_PRIME jvl UPSTREAM smp-30 INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3R	15890684	3R_15890684_SNP [dm3] 3R_20064962_SNP [dm6]	G	T	3.045e^-4	0.873	INTERGENIC
2R	16803210	2R_16803210_SNP [dm3] 2R_20915705_SNP [dm6]	G	A	3.045e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	14079493	3L_14079493_SNP [dm3] 3L_14086393_SNP [dm6]	A	T	3.047e^-4	0.873	DOWNSTREAM CG8100 INTERGENIC
3L	12779776	3L_12779776_SNP [dm3] 3L_12786676_SNP [dm6]	C	T	3.048e^-4	0.873	SYNONYMOUS_CODING Atg1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	21329575	3L_21329575_SNP [dm3] 3L_21336475_SNP [dm6]	C	G	3.049e^-4	0.873	NON_SYNONYMOUS_CODING CG7338	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	10392395	3R_10392395_INS [dm3] 3R_14566673_INS [dm6]	A	AA	3.052e^-4	0.873	UTR_3_PRIME CG31313 DOWNSTREAM CG31313 & 2 others	TF binding site mE1_TFBS_cad
2R	6854855	2R_6854855_SNP [dm3] 2R_10967350_SNP [dm6]	C	T	3.052e^-4	0.873	INTERGENIC
2R	1780461	2R_1780461_SNP [dm3] 2R_5892956_SNP [dm6]	C	G	3.057e^-4	0.873	UPSTREAM CG43366 INTERGENIC
2L	14121823	2L_14121823_SNP [dm3] 2L_14121823_SNP [dm6]	T	C	3.075e^-4	0.873	INTERGENIC
3L	14327309	3L_14327309_SNP [dm3] 3L_14334209_SNP [dm6]	G	A	3.075e^-4	0.873	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	10591567	3R_10591567_DEL [dm3] 3R_14765845_DEL [dm6]	TT	T	3.076e^-4	0.873	INTRON jvl
3L	18392259	3L_18392259_SNP [dm3] 3L_18399159_SNP [dm6]	G	T	3.077e^-4	0.873	UPSTREAM rpr INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_Trl
3L	15278551	3L_15278551_SNP [dm3] 3L_15285451_SNP [dm6]	G	T	3.078e^-4	0.873	INTERGENIC
X	17334597	X_17334597_SNP [dm3] X_17440564_SNP [dm6]	T	C	3.080e^-4	0.873	INTRON CG12994
3R	15197403	3R_15197403_SNP [dm3] 3R_19371681_SNP [dm6]	A	G	3.081e^-4	0.873	INTRON Ino80
2R	15002351	2R_15002351_SNP [dm3] 2R_19114846_SNP [dm6]	G	A	3.084e^-4	0.873	INTRON 5-HT1A
3L	5267964	3L_5267964_SNP [dm3] 3L_5274864_SNP [dm6]	G	C	3.085e^-4	0.873	INTRON shep	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	17874964	2L_17874964_SNP [dm3] 2L_17874964_SNP [dm6]	A	C	3.096e^-4	0.873	INTRON CadN2
3L	3119769	3L_3119769_SNP [dm3] 3L_3119769_SNP [dm6]	A	G	3.097e^-4	0.873	INTRON prominin-like
3L	15210844	3L_15210844_SNP [dm3] 3L_15217744_SNP [dm6]	C	T	3.099e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18271941	3L_18271941_SNP [dm3] 3L_18278841_SNP [dm6]	G	A	3.101e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	21328967	3L_21328967_SNP [dm3] 3L_21335867_SNP [dm6]	C	A	3.124e^-4	0.873	NON_SYNONYMOUS_CODING CG7338 DOWNSTREAM Rab26	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	17874572	X_17874572_SNP [dm3] X_17980539_SNP [dm6]	C	A	3.130e^-4	0.873	INTRON Sh
2R	18025479	2R_18025479_SNP [dm3] 2R_22137974_SNP [dm6]	T	C	3.136e^-4	0.873	UTR_5_PRIME a UPSTREAM CG11269 INTRON a
2L	19216586	2L_19216586_SNP [dm3] 2L_19216586_SNP [dm6]	A	G	3.143e^-4	0.873	UPSTREAM CR44189 INTERGENIC	TF binding site BDTNP1_TFBS_gt mE1_TFBS_HSA mE1_TFBS_sens
2L	20762989	2L_20762989_SNP [dm3] 2L_20762989_SNP [dm6]	T	C	3.149e^-4	0.873	DOWNSTREAM dia INTRON dia	TF binding site mE1_TFBS_HSA
3L	15677792	3L_15677792_SNP [dm3] 3L_15684692_SNP [dm6]	G	T	3.154e^-4	0.873	INTRON pgant8
2R	14840822	2R_14840822_SNP [dm3] 2R_18953317_SNP [dm6]	C	G	3.154e^-4	0.873	INTRON sano
3L	19578510	3L_19578510_SNP [dm3] 3L_19585410_SNP [dm6]	G	C	3.156e^-4	0.873	UTR_3_PRIME CG9231 UPSTREAM Shal & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	17821534	3L_17821534_SNP [dm3] 3L_17828434_SNP [dm6]	C	A	3.157e^-4	0.873	INTRON Grd
3L	18287540	3L_18287540_SNP [dm3] 3L_18294440_SNP [dm6]	G	T	3.158e^-4	0.873	UPSTREAM CR43306 & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
3L	12178027	3L_12178027_SNP [dm3] 3L_12184927_SNP [dm6]	T	C	3.167e^-4	0.873	UPSTREAM CG6910 INTERGENIC
3L	14544161	3L_14544161_SNP [dm3] 3L_14551061_SNP [dm6]	T	G	3.180e^-4	0.873	UPSTREAM CG9238 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens
3L	4605946	3L_4605946_SNP [dm3] 3L_4605946_SNP [dm6]	T	C	3.180e^-4	0.873	INTRON Src64B
2R	20120786	2R_20120786_SNP [dm3] 2R_24233263_SNP [dm6]	A	T	3.185e^-4	0.873	INTERGENIC
3L	17168067	3L_17168067_SNP [dm3] 3L_17174967_SNP [dm6]	C	G	3.191e^-4	0.873	INTRON Rbp6
3R	9620876	3R_9620876_SNP [dm3] 3R_13795154_SNP [dm6]	C	G	3.194e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	21602212	3L_21602212_SNP [dm3] 3L_21609112_SNP [dm6]	A	T	3.205e^-4	0.873	INTRON TfAP-2
3L	6492486	3L_6492486_SNP [dm3] 3L_6499386_SNP [dm6]	C	A	3.216e^-4	0.873	INTRON sfl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3R	15333011	3R_15333011_SNP [dm3] 3R_19507289_SNP [dm6]	C	T	3.232e^-4	0.873	INTRON Dys
3L	15383858	3L_15383858_SNP [dm3] 3L_15390758_SNP [dm6]	A	G	3.242e^-4	0.873	INTERGENIC
3R	8154206	3R_8154206_SNP [dm3] 3R_12328484_SNP [dm6]	A	G	3.244e^-4	0.873	UPSTREAM CR45583 DOWNSTREAM CR45584 INTERGENIC
2R	18032128	2R_18032128_DEL [dm3] 2R_22144623_DEL [dm6]	TGTAT	T	3.245e^-4	0.873	INTRON a	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	15775824	2L_15775824_SNP [dm3] 2L_15775824_SNP [dm6]	T	C	3.246e^-4	0.873	DOWNSTREAM CG43760 INTERGENIC
3L	13778758	3L_13778758_SNP [dm3] 3L_13785658_SNP [dm6]	T	G	3.249e^-4	0.873	INTRON bru-3
X	20909742	X_20909742_SNP [dm3] X_21038715_SNP [dm6]	C	T	3.255e^-4	0.873	DOWNSTREAM CG15449 INTRON Ntf-2
3R	10641307	3R_10641307_SNP [dm3] 3R_14815585_SNP [dm6]	A	G	3.255e^-4	0.873	SYNONYMOUS_CODING btsz INTRON btsz	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	13663432	2R_13663432_SNP [dm3] 2R_17775927_SNP [dm6]	T	A	3.262e^-4	0.873	SPLICE_SITE_REGION fab1 & 1 other INTRON fab1 & 1 other
3L	13716612	3L_13716612_SNP [dm3] 3L_13723512_SNP [dm6]	G	T	3.265e^-4	0.873	INTRON bru-3
X	14092767	X_14092767_SNP [dm3] X_14198734_SNP [dm6]	C	T	3.266e^-4	0.873	SYNONYMOUS_CODING yl UPSTREAM mir-4917	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3291013	2L_3291013_SNP [dm3] 2L_3291013_SNP [dm6]	G	T	3.269e^-4	0.873	DOWNSTREAM CG9664 INTERGENIC	TF binding site mE1_TFBS_bab1
3R	7700059	3R_7700059_SNP [dm3] 3R_11874337_SNP [dm6]	T	C	3.270e^-4	0.873	INTERGENIC
3R	10656455	3R_10656455_SNP [dm3] 3R_14830733_SNP [dm6]	A	T	3.271e^-4	0.873	INTRON btsz
3R	19217509	3R_19217509_SNP [dm3] 3R_23391787_SNP [dm6]	C	A	3.271e^-4	0.873	INTERGENIC
X	9603511	X_9603511_SNP [dm3] X_9709478_SNP [dm6]	T	C	3.271e^-4	0.873	INTERGENIC
2R	11663155	2R_11663155_SNP [dm3] 2R_15775650_SNP [dm6]	G	A	3.273e^-4	0.873	INTRON Zasp52	TF binding site mE1_TFBS_chinmo
2L	11881419	2L_11881419_SNP [dm3] 2L_11881419_SNP [dm6]	C	G	3.276e^-4	0.873	INTRON Pde1c	TF binding site mE1_TFBS_inv
X	2949269	X_2949269_SNP [dm3] X_3055236_SNP [dm6]	G	A	3.277e^-4	0.873	INTRON kirre
3L	8546058	3L_8546058_SNP [dm3] 3L_8552958_SNP [dm6]	T	A	3.278e^-4	0.873	INTRON rhea
2L	3872842	2L_3872842_SNP [dm3] 2L_3872842_SNP [dm6]	A	G	3.290e^-4	0.873	SYNONYMOUS_CODING capu UPSTREAM CG31957	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	6083254	2R_6083254_SNP [dm3] 2R_10195749_SNP [dm6]	A	T	3.293e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	3635546	2L_3635546_SNP [dm3] 2L_3635546_SNP [dm6]	T	C	3.301e^-4	0.873	INTRON for
3L	18271959	3L_18271959_SNP [dm3] 3L_18278859_SNP [dm6]	T	A	3.307e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	8878902	2L_8878902_SNP [dm3] 2L_8878902_SNP [dm6]	A	G	3.318e^-4	0.873	INTERGENIC	TF binding site mE1_TFBS_cad
2L	8872118	2L_8872118_DEL [dm3] 2L_8872118_DEL [dm6]	AA	A	3.320e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10631668	2R_10631668_SNP [dm3] 2R_14744163_SNP [dm6]	C	A	3.328e^-4	0.873	UTR_5_PRIME CG12858	TF binding site mE1_TFBS_cad
3L	8693170	3L_8693170_SNP [dm3] 3L_8700070_SNP [dm6]	G	C	3.331e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
X	20312109	X_20312109_SNP [dm3] X_20441082_SNP [dm6]	T	C	3.332e^-4	0.873	SYNONYMOUS_CODING CG1695	TF binding site mE1_TFBS_chinmo
2R	15014770	2R_15014770_SNP [dm3] 2R_19127265_SNP [dm6]	G	T	3.333e^-4	0.873	UPSTREAM CG15117 INTRON CG15117
2L	20691851	2L_20691851_SNP [dm3] 2L_20691851_SNP [dm6]	G	A	3.333e^-4	0.873	INTRON Hr38
3R	20947010	3R_20947010_SNP [dm3] 3R_25121288_SNP [dm6]	C	G	3.349e^-4	0.873	INTRON CG31108 & 1 other
3R	8153863	3R_8153863_SNP [dm3] 3R_12328141_SNP [dm6]	C	G	3.350e^-4	0.873	DOWNSTREAM CR45584 INTERGENIC
X	21172416	X_21172416_INS [dm3] X_21301389_INS [dm6]	T	TT	3.359e^-4	0.873	INTRON CG1718
3R	6265550	3R_6265550_SNP [dm3] 3R_10439828_SNP [dm6]	C	T	3.359e^-4	0.873	INTERGENIC
3L	13119239	3L_13119239_SNP [dm3] 3L_13126139_SNP [dm6]	C	T	3.359e^-4	0.873	INTERGENIC
2L	12703959	2L_12703959_SNP [dm3] 2L_12703959_SNP [dm6]	G	T	3.367e^-4	0.873	UPSTREAM spict INTRON CG5776	TF binding site mE1_TFBS_sens
2L	20768924	2L_20768924_SNP [dm3] 2L_20768924_SNP [dm6]	C	A	3.369e^-4	0.873	DOWNSTREAM dia INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	18423943	2L_18423943_SNP [dm3] 2L_18423943_SNP [dm6]	T	A	3.370e^-4	0.873	INTERGENIC
X	8899857	X_8899857_DEL [dm3] X_9005824_DEL [dm6]	TGATG	T	3.371e^-4	0.873	INTRON rdgA & 1 other
3R	11470442	3R_11470442_SNP [dm3] 3R_15644720_SNP [dm6]	C	T	3.376e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
2L	1732734	2L_1732734_SNP [dm3] 2L_1732734_SNP [dm6]	G	C	3.376e^-4	0.873	UPSTREAM CG17652 INTRON CG17646	TF binding site BDTNP1_TFBS_dl
3L	8216663	3L_8216663_SNP [dm3] 3L_8223563_SNP [dm6]	G	C	3.376e^-4	0.873	DOWNSTREAM CG13678 INTERGENIC	TF binding site mE1_TFBS_cad
3R	21705346	3R_21705346_SNP [dm3] 3R_25879624_SNP [dm6]	T	G	3.380e^-4	0.873	INTRON Tsp96F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	14755501	2R_14755501_SNP [dm3] 2R_18867996_SNP [dm6]	A	G	3.399e^-4	0.873	SYNONYMOUS_CODING CG43109 DOWNSTREAM DptB
X	5715689	X_5715689_SNP [dm3] X_5821656_SNP [dm6]	C	T	3.400e^-4	0.873	INTRON CG15765	TF binding site mE1_TFBS_chinmo
2R	16967560	2R_16967560_SNP [dm3] 2R_21080055_SNP [dm6]	A	G	3.406e^-4	0.873	UPSTREAM Treh INTRON Treh
3L	8105983	3L_8105983_SNP [dm3] 3L_8112883_SNP [dm6]	C	T	3.411e^-4	0.873	UTR_3_PRIME CG7927 DOWNSTREAM Arp3 INTRON CG7927
3L	17171469	3L_17171469_SNP [dm3] 3L_17178369_SNP [dm6]	A	T	3.422e^-4	0.873	INTRON Rbp6
2R	19202079	2R_19202079_SNP [dm3] 2R_23314556_SNP [dm6]	T	G	3.423e^-4	0.873	UPSTREAM HP1Lcsd INTERGENIC
2L	20974397	2L_20974397_SNP [dm3] 2L_20974397_SNP [dm6]	G	T	3.434e^-4	0.873	INTRON CG42238
2L	2856836	2L_2856836_SNP [dm3] 2L_2856836_SNP [dm6]	C	T	3.434e^-4	0.873	UTR_3_PRIME RpS21 UPSTREAM CG2991 DOWNSTREAM RpS21	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
X	19279833	X_19279833_SNP [dm3] X_19385800_SNP [dm6]	A	C	3.437e^-4	0.873	INTRON kek5
2L	15856805	2L_15856805_SNP [dm3] 2L_15856805_SNP [dm6]	C	G	3.441e^-4	0.873	DOWNSTREAM Tektin-A INTERGENIC
X	14041606	X_14041606_SNP [dm3] X_14147573_SNP [dm6]	G	C	3.441e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	21174508	X_21174508_SNP [dm3] X_21303481_SNP [dm6]	G	A	3.449e^-4	0.873	UPSTREAM CG1718 DOWNSTREAM tRNA:CR32520 INTRON CG1718
3L	11283165	3L_11283165_SNP [dm3] 3L_11290065_SNP [dm6]	G	C	3.453e^-4	0.873	INTRON CG6175
3L	14498699	3L_14498699_SNP [dm3] 3L_14505599_SNP [dm6]	C	G	3.453e^-4	0.873	INTRON bbg
3L	4387939	3L_4387939_SNP [dm3] 3L_4387939_SNP [dm6]	T	C	3.453e^-4	0.873	INTRON slow
3R	9841053	3R_9841053_SNP [dm3] 3R_14015331_SNP [dm6]	C	G	3.460e^-4	0.873	INTRON rdx
2L	20762983	2L_20762983_SNP [dm3] 2L_20762983_SNP [dm6]	C	A	3.464e^-4	0.873	DOWNSTREAM dia INTRON dia	TF binding site mE1_TFBS_HSA
2L	15412828	2L_15412828_SNP [dm3] 2L_15412828_SNP [dm6]	T	G	3.471e^-4	0.873	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5907266	3L_5907266_SNP [dm3] 3L_5914166_SNP [dm6]	C	T	3.473e^-4	0.873	INTRON CG13288
X	21164604	X_21164604_SNP [dm3] X_21293577_SNP [dm6]	T	A	3.475e^-4	0.873	INTRON CG1718
X	7692006	X_7692006_SNP [dm3] X_7797973_SNP [dm6]	T	C	3.478e^-4	0.873	INTERGENIC
3R	9610668	3R_9610668_SNP [dm3] 3R_13784946_SNP [dm6]	C	T	3.481e^-4	0.873	SYNONYMOUS_CODING Dip-B DOWNSTREAM CR45590	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2630476	2L_2630476_SNP [dm3] 2L_2630476_SNP [dm6]	A	T	3.487e^-4	0.873	INTERGENIC
2L	1627387	2L_1627387_SNP [dm3] 2L_1627387_SNP [dm6]	T	A	3.489e^-4	0.873	INTERGENIC
2L	9804082	2L_9804082_SNP [dm3] 2L_9804082_SNP [dm6]	T	C	3.489e^-4	0.873	INTRON nAChRalpha6
3L	10923736	3L_10923736_SNP [dm3] 3L_10930636_SNP [dm6]	T	C	3.493e^-4	0.873	INTERGENIC
3R	14058396	3R_14058396_SNP [dm3] 3R_18232674_SNP [dm6]	C	G	3.504e^-4	0.873	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14507348	3L_14507348_SNP [dm3] 3L_14514248_SNP [dm6]	G	T	3.510e^-4	0.873	INTRON bbg	enhancer mE1_CBP_Enhancers TF binding site mE1_TFBS_bab1
X	20909621	X_20909621_INS [dm3] X_21038594_INS [dm6]	T	TTT	3.511e^-4	0.873	DOWNSTREAM CG15449 INTRON Ntf-2
3L	16799738	3L_16799738_SNP [dm3] 3L_16806638_SNP [dm6]	A	T	3.517e^-4	0.873	INTRON CG9674 & 1 other	TF binding site mE1_TFBS_Trl
2R	6845127	2R_6845127_DEL [dm3] 2R_10957622_DEL [dm6]	TT	T	3.524e^-4	0.873	INTERGENIC
2R	10831586	2R_10831586_SNP [dm3] 2R_14944081_SNP [dm6]	A	T	3.526e^-4	0.873	DOWNSTREAM aPKC INTRON CG10257	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11677124	2R_11677124_INS [dm3] 2R_15789619_INS [dm6]	A	AA	3.528e^-4	0.873	INTRON Zasp52	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	14833473	3L_14833473_SNP [dm3] 3L_14840373_SNP [dm6]	A	G	3.535e^-4	0.873	INTRON CG17839
3L	19576788	3L_19576788_SNP [dm3] 3L_19583688_SNP [dm6]	A	G	3.535e^-4	0.873	INTRON Shal	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	14501913	3L_14501913_SNP [dm3] 3L_14508813_SNP [dm6]	A	G	3.546e^-4	0.873	NON_SYNONYMOUS_CODING bbg
3R	6265535	3R_6265535_SNP [dm3] 3R_10439813_SNP [dm6]	C	T	3.548e^-4	0.873	INTERGENIC
X	20566718	X_20566718_SNP [dm3] X_20695691_SNP [dm6]	T	A	3.548e^-4	0.873	INTRON run	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19578395	3L_19578395_SNP [dm3] 3L_19585295_SNP [dm6]	C	T	3.561e^-4	0.873	UTR_3_PRIME CG9231 UPSTREAM Shal & 1 other	TF binding site BDTNP1_TFBS_dl
3L	7820489	3L_7820489_SNP [dm3] 3L_7827389_SNP [dm6]	T	G	3.565e^-4	0.873	INTRON Pdp1
2L	4400470	2L_4400470_SNP [dm3] 2L_4400470_SNP [dm6]	G	T	3.570e^-4	0.873	UTR_3_PRIME l_2_k05819 UPSTREAM CG33003 DOWNSTREAM l_2_k05819
X	16665876	X_16665876_INS [dm3] X_16771843_INS [dm6]	T	TATTTCTGAT	3.572e^-4	0.873	INTRON if	TF binding site BDTNP1_TFBS_da
3R	14593545	3R_14593545_SNP [dm3] 3R_18767823_SNP [dm6]	A	G	3.577e^-4	0.873	INTRON CG7720
X	12612722	X_12612722_SNP [dm3] X_12718689_SNP [dm6]	T	A	3.580e^-4	0.873	UPSTREAM CR43963 INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	9615500	3L_9615500_SNP [dm3] 3L_9622400_SNP [dm6]	T	G	3.581e^-4	0.873	INTRON LanB2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6780755	2L_6780755_SNP [dm3] 2L_6780755_SNP [dm6]	C	G	3.589e^-4	0.873	INTRON nrv1
2L	17442807	2L_17442807_SNP [dm3] 2L_17442807_SNP [dm6]	T	C	3.594e^-4	0.873	SYNONYMOUS_CODING dl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20779009	2R_20779009_SNP [dm3] 2R_24891486_SNP [dm6]	G	A	3.598e^-4	0.873	UPSTREAM NaCP60E & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6955941	3L_6955941_SNP [dm3] 3L_6962841_SNP [dm6]	C	A	3.603e^-4	0.873	INTRON sgl
2L	6015504	2L_6015504_SNP [dm3] 2L_6015504_SNP [dm6]	T	C	3.604e^-4	0.873	INTRON H2.0
3R	11979774	3R_11979774_SNP [dm3] 3R_16154052_SNP [dm6]	T	C	3.618e^-4	0.875	UPSTREAM CG6006 INTERGENIC
X	10980742	X_10980742_DEL [dm3] X_11086709_DEL [dm6]	AGATGTATTTTCCA...	A	3.623e^-4	0.875	UPSTREAM sev INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	2792485	2L_2792485_SNP [dm3] 2L_2792485_SNP [dm6]	A	G	3.631e^-4	0.875	SYNONYMOUS_CODING Syt1 UTR_3_PRIME Syt1
2R	18030541	2R_18030541_SNP [dm3] 2R_22143036_SNP [dm6]	A	G	3.637e^-4	0.875	INTRON a	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18271993	3L_18271993_SNP [dm3] 3L_18278893_SNP [dm6]	A	T	3.670e^-4	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	19667113	X_19667113_SNP [dm3] X_19773080_SNP [dm6]	A	C	3.682e^-4	0.875	INTRON vfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8801964	3L_8801964_SNP [dm3] 3L_8808864_SNP [dm6]	G	A	3.683e^-4	0.875	SYNONYMOUS_CODING CG13308 DOWNSTREAM CG32024
3L	15318563	3L_15318563_SNP [dm3] 3L_15325463_SNP [dm6]	A	T	3.684e^-4	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13628607	3L_13628607_SNP [dm3] 3L_13635507_SNP [dm6]	T	C	3.685e^-4	0.875	INTRON bru-3	TF binding site BDTNP1_TFBS_hb
3L	825169	3L_825169_INS [dm3] 3L_825169_INS [dm6]	T	TT	3.689e^-4	0.875	INTERGENIC
3L	6088701	3L_6088701_DEL [dm3] 3L_6095601_DEL [dm6]	AT	A	3.695e^-4	0.875	UPSTREAM CG10467 INTRON loj
3R	16616596	3R_16616596_SNP [dm3] 3R_20790874_SNP [dm6]	T	C	3.695e^-4	0.875	INTRON Syp
3L	16625176	3L_16625176_SNP [dm3] 3L_16632076_SNP [dm6]	T	C	3.696e^-4	0.875	INTRON Abl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1114213	2L_1114213_SNP [dm3] 2L_1114213_SNP [dm6]	G	A	3.708e^-4	0.875	DOWNSTREAM Pino & 1 other INTERGENIC
2L	2828229	2L_2828229_SNP [dm3] 2L_2828229_SNP [dm6]	A	G	3.721e^-4	0.875	INTRON Duox
3L	21317073	3L_21317073_SNP [dm3] 3L_21323973_SNP [dm6]	G	T	3.721e^-4	0.875	INTRON Rab26
2R	9268018	2R_9268018_SNP [dm3] 2R_13380513_SNP [dm6]	G	C	3.724e^-4	0.875	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25307133	3R_25307133_SNP [dm3] 3R_29481411_SNP [dm6]	G	A	3.731e^-4	0.875	INTRON Ptp99A	TF binding site mE1_TFBS_cad
3L	8693118	3L_8693118_SNP [dm3] 3L_8700018_SNP [dm6]	G	A	3.739e^-4	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3L	10244302	3L_10244302_SNP [dm3] 3L_10251202_SNP [dm6]	T	C	3.740e^-4	0.875	INTERGENIC
2R	19113268	2R_19113268_SNP [dm3] 2R_23225745_SNP [dm6]	C	T	3.741e^-4	0.875	INTERGENIC
2L	2828222	2L_2828222_SNP [dm3] 2L_2828222_SNP [dm6]	A	T	3.743e^-4	0.875	INTRON Duox
3R	13519430	3R_13519430_SNP [dm3] 3R_17693708_SNP [dm6]	G	A	3.746e^-4	0.875	SPLICE_SITE_REGION osa INTRON osa	TF binding site mE1_TFBS_cad
3L	16537669	3L_16537669_SNP [dm3] 3L_16544569_SNP [dm6]	G	T	3.749e^-4	0.875	UTR_3_PRIME CG13033	TF binding site mE1_TFBS_cad
X	18224012	X_18224012_SNP [dm3] X_18329979_SNP [dm6]	G	A	3.753e^-4	0.875	INTRON CG6123
3L	1021678	3L_1021678_SNP [dm3] 3L_1021678_SNP [dm6]	T	C	3.758e^-4	0.875	INTRON trio
3R	21859374	3R_21859374_SNP [dm3] 3R_26033652_SNP [dm6]	A	C	3.759e^-4	0.875	UTR_3_PRIME E_spl_m6-BFM	TF binding site BDTNP1_TFBS_twi mE1_TFBS_disco
3R	16667261	3R_16667261_SNP [dm3] 3R_20841539_SNP [dm6]	G	A	3.759e^-4	0.875	UPSTREAM CG15695 INTERGENIC
3R	15307667	3R_15307667_SNP [dm3] 3R_19481945_SNP [dm6]	T	C	3.759e^-4	0.875	SYNONYMOUS_CODING Dys
3R	10498367	3R_10498367_SNP [dm3] 3R_14672645_SNP [dm6]	C	A	3.760e^-4	0.875	INTRON Meltrin	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	15557912	2L_15557912_SNP [dm3] 2L_15557912_SNP [dm6]	G	A	3.762e^-4	0.875	INTRON kek3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16697852	2R_16697852_SNP [dm3] 2R_20810347_SNP [dm6]	A	C	3.767e^-4	0.875	INTERGENIC
3L	7870460	3L_7870460_SNP [dm3] 3L_7877360_SNP [dm6]	G	C	3.769e^-4	0.875	INTRON CG32365	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	14717472	3R_14717472_SNP [dm3] 3R_18891750_SNP [dm6]	C	G	3.770e^-4	0.875	INTERGENIC
3L	5268130	3L_5268130_SNP [dm3] 3L_5275030_SNP [dm6]	G	T	3.786e^-4	0.875	INTRON shep	TF binding site BDTNP1_TFBS_twi
2R	12042114	2R_12042114_SNP [dm3] 2R_16154609_SNP [dm6]	T	A	3.787e^-4	0.875	INTRON lbk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_zfh1
2R	14340953	2R_14340953_SNP [dm3] 2R_18453448_SNP [dm6]	A	G	3.791e^-4	0.875	SYNONYMOUS_CODING CG17669 DOWNSTREAM CG5190	TF binding site mE1_TFBS_cad
3R	15333976	3R_15333976_SNP [dm3] 3R_19508254_SNP [dm6]	A	G	3.792e^-4	0.875	INTRON Dys
3L	13883774	3L_13883774_SNP [dm3] 3L_13890674_SNP [dm6]	C	T	3.795e^-4	0.875	INTRON dysc
3L	10244237	3L_10244237_SNP [dm3] 3L_10251137_SNP [dm6]	G	A	3.797e^-4	0.875	INTERGENIC
3R	13640219	3R_13640219_SNP [dm3] 3R_17814497_SNP [dm6]	A	G	3.808e^-4	0.876	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	18116537	3R_18116537_SNP [dm3] 3R_22290815_SNP [dm6]	C	G	3.818e^-4	0.876	INTRON SKIP
X	18341530	X_18341530_SNP [dm3] X_18447497_SNP [dm6]	A	T	3.819e^-4	0.876	INTRON CG32547
X	15976048	X_15976048_SNP [dm3] X_16082015_SNP [dm6]	T	G	3.822e^-4	0.876	UPSTREAM mir-4958 INTRON Tob
2R	17860234	2R_17860234_SNP [dm3] 2R_21972729_SNP [dm6]	A	T	3.833e^-4	0.878	UPSTREAM CG9304 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	12408985	2R_12408985_SNP [dm3] 2R_16521480_SNP [dm6]	T	C	3.855e^-4	0.878	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9613128	3R_9613128_SNP [dm3] 3R_13787406_SNP [dm6]	A	G	3.855e^-4	0.878	UPSTREAM CR45590 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	12261389	2R_12261389_SNP [dm3] 2R_16373884_SNP [dm6]	G	A	3.860e^-4	0.878	INTERGENIC
3L	17821644	3L_17821644_DEL [dm3] 3L_17828544_DEL [dm6]	AAAT	G	3.863e^-4	0.878	INTRON Grd
X	8677663	X_8677663_SNP [dm3] X_8783630_SNP [dm6]	A	T	3.866e^-4	0.878	INTRON Lim1
2L	11290438	2L_11290438_SNP [dm3] 2L_11290438_SNP [dm6]	T	C	3.869e^-4	0.878	DOWNSTREAM CR43409 INTERGENIC
3L	13697445	3L_13697445_DEL [dm3] 3L_13704345_DEL [dm6]	GAAGATAC	G	3.874e^-4	0.878	INTRON bru-3
2L	14334720	2L_14334720_SNP [dm3] 2L_14334720_SNP [dm6]	G	A	3.875e^-4	0.878	DOWNSTREAM ms_2_34Fe INTRON CG33090
2L	2856905	2L_2856905_SNP [dm3] 2L_2856905_SNP [dm6]	A	C	3.882e^-4	0.878	UTR_3_PRIME RpS21 UPSTREAM CG2991 DOWNSTREAM RpS21	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
3L	14493648	3L_14493648_INS [dm3] 3L_14500548_INS [dm6]	C	CGACGTTTTTGAATAT...	3.895e^-4	0.878	INTRON bbg
2L	16555435	2L_16555435_SNP [dm3] 2L_16555435_SNP [dm6]	C	A	3.895e^-4	0.878	INTRON CG42389
3L	13120507	3L_13120507_SNP [dm3] 3L_13127407_SNP [dm6]	A	G	3.896e^-4	0.878	INTERGENIC
3L	9614760	3L_9614760_SNP [dm3] 3L_9621660_SNP [dm6]	C	T	3.915e^-4	0.878	SYNONYMOUS_CODING LanB2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21694620	3R_21694620_SNP [dm3] 3R_25868898_SNP [dm6]	A	G	3.923e^-4	0.878	INTRON CG5890	TF binding site mE1_TFBS_HSA
3L	4387990	3L_4387990_SNP [dm3] 3L_4387990_SNP [dm6]	T	C	3.925e^-4	0.878	INTRON slow
3L	15934029	3L_15934029_SNP [dm3] 3L_15940929_SNP [dm6]	T	G	3.935e^-4	0.878	INTRON Pka-C3
3L	2484195	3L_2484195_SNP [dm3] 3L_2484195_SNP [dm6]	G	C	3.938e^-4	0.878	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	11289681	3R_11289681_SNP [dm3] 3R_15463959_SNP [dm6]	G	A	3.939e^-4	0.878	UPSTREAM AdamTS-A INTRON AdamTS-A
3L	6749539	3L_6749539_SNP [dm3] 3L_6756439_SNP [dm6]	A	G	3.940e^-4	0.878	UTR_5_PRIME CG10103 DOWNSTREAM CG32392	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	7820493	3L_7820493_SNP [dm3] 3L_7827393_SNP [dm6]	T	A	3.944e^-4	0.878	INTRON Pdp1
X	9830644	X_9830644_SNP [dm3] X_9936611_SNP [dm6]	T	C	3.945e^-4	0.878	INTERGENIC
3L	15000743	3L_15000743_SNP [dm3] 3L_15007643_SNP [dm6]	T	A	3.946e^-4	0.878	INTRON Reck
2L	10871924	2L_10871924_SNP [dm3] 2L_10871924_SNP [dm6]	T	A	3.946e^-4	0.878	UPSTREAM CR45454 DOWNSTREAM CR45453 INTERGENIC
2L	8333431	2L_8333431_SNP [dm3] 2L_8333431_SNP [dm6]	C	T	3.948e^-4	0.878	DOWNSTREAM CG14275 INTERGENIC
X	11009293	X_11009293_SNP [dm3] X_11115260_SNP [dm6]	C	T	3.951e^-4	0.878	SYNONYMOUS_CODING CG11122	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2L	18894828	2L_18894828_SNP [dm3] 2L_18894828_SNP [dm6]	T	C	3.973e^-4	0.879	EXON CR44737	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve
2R	13563348	2R_13563348_DEL [dm3] 2R_17675843_DEL [dm6]	AA	A	3.976e^-4	0.879	SPLICE_SITE_REGION Sema-1b INTRON Sema-1b	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7606929	3L_7606929_SNP [dm3] 3L_7613829_SNP [dm6]	G	A	3.989e^-4	0.879	INTRON CG33275
X	21172404	X_21172404_SNP [dm3] X_21301377_SNP [dm6]	C	G	3.995e^-4	0.879	INTRON CG1718
2R	16731410	2R_16731410_SNP [dm3] 2R_20843905_SNP [dm6]	G	A	3.996e^-4	0.879	INTERGENIC
3L	19579091	3L_19579091_SNP [dm3] 3L_19585991_SNP [dm6]	T	C	3.999e^-4	0.879	UTR_5_PRIME CG9231 UPSTREAM CG9330 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
2L	7238952	2L_7238952_SNP [dm3] 2L_7238952_SNP [dm6]	G	T	4.000e^-4	0.879	INTRON Ndae1
2R	17512862	2R_17512862_SNP [dm3] 2R_21625357_SNP [dm6]	C	A	4.004e^-4	0.879	SYNONYMOUS_CODING mahj UPSTREAM PTP-ER	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	17512892	2R_17512892_SNP [dm3] 2R_21625387_SNP [dm6]	A	G	4.004e^-4	0.879	SYNONYMOUS_CODING mahj UPSTREAM PTP-ER	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	14618538	3L_14618538_SNP [dm3] 3L_14625438_SNP [dm6]	T	C	4.006e^-4	0.879	INTRON CG9628	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	9606719	3R_9606719_SNP [dm3] 3R_13780997_SNP [dm6]	C	A	4.009e^-4	0.879	UTR_5_PRIME CG9286 DOWNSTREAM CG9288 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14618465	3L_14618465_SNP [dm3] 3L_14625365_SNP [dm6]	G	A	4.016e^-4	0.88	INTRON CG9628	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	8094057	3R_8094057_SNP [dm3] 3R_12268335_SNP [dm6]	A	G	4.030e^-4	0.88	UPSTREAM CR44039 INTRON svp
3L	16540836	3L_16540836_SNP [dm3] 3L_16547736_SNP [dm6]	A	G	4.034e^-4	0.88	INTERGENIC
3L	13193829	3L_13193829_SNP [dm3] 3L_13200729_SNP [dm6]	T	C	4.042e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	21166362	X_21166362_SNP [dm3] X_21295335_SNP [dm6]	A	G	4.051e^-4	0.88	SYNONYMOUS_CODING CG1718
2L	4425426	2L_4425426_SNP [dm3] 2L_4425426_SNP [dm6]	C	T	4.054e^-4	0.88	INTRON CG15431	insulator Insulator_Class_II.mE01
2R	18021184	2R_18021184_SNP [dm3] 2R_22133679_SNP [dm6]	A	G	4.059e^-4	0.88	INTERGENIC
3L	8806068	3L_8806068_SNP [dm3] 3L_8812968_SNP [dm6]	A	C	4.074e^-4	0.88	INTERGENIC
2L	7396933	2L_7396933_SNP [dm3] 2L_7396933_SNP [dm6]	A	G	4.078e^-4	0.88	INTRON CG5160
2R	13900424	2R_13900424_SNP [dm3] 2R_18012919_SNP [dm6]	A	T	4.081e^-4	0.88	INTERGENIC
2R	17469144	2R_17469144_SNP [dm3] 2R_21581639_SNP [dm6]	T	C	4.083e^-4	0.88	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	13941046	2R_13941046_DEL [dm3] 2R_18053541_DEL [dm6]	ATT	A	4.085e^-4	0.88	INTRON CG10911
3L	8805810	3L_8805810_SNP [dm3] 3L_8812710_SNP [dm6]	T	A	4.086e^-4	0.88	INTERGENIC
2L	15856832	2L_15856832_SNP [dm3] 2L_15856832_SNP [dm6]	G	A	4.090e^-4	0.88	DOWNSTREAM Tektin-A INTERGENIC
2L	6253893	2L_6253893_SNP [dm3] 2L_6253893_SNP [dm6]	T	G	4.091e^-4	0.88	INTRON Ddr	TF binding site mE1_TFBS_Trl
3L	12778968	3L_12778968_SNP [dm3] 3L_12785868_SNP [dm6]	T	C	4.094e^-4	0.88	SPLICE_SITE_REGION Atg1 INTRON Atg1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	10799390	X_10799390_DEL [dm3] X_10905357_DEL [dm6]	CATACCCCACC...	C	4.097e^-4	0.88	UPSTREAM CG43901 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4647446	3L_4647446_SNP [dm3] 3L_4647446_SNP [dm6]	T	C	4.102e^-4	0.88	UPSTREAM CG32238 INTRON axo
3L	8803294	3L_8803294_SNP [dm3] 3L_8810194_SNP [dm6]	T	G	4.106e^-4	0.88	UPSTREAM CG13309 DOWNSTREAM CG13308 INTERGENIC
3L	7868917	3L_7868917_SNP [dm3] 3L_7875817_SNP [dm6]	A	T	4.108e^-4	0.88	INTRON CG32365
3L	12268022	3L_12268022_SNP [dm3] 3L_12274922_SNP [dm6]	T	C	4.109e^-4	0.88	INTRON CG4300
2L	2940219	2L_2940219_SNP [dm3] 2L_2940219_SNP [dm6]	G	A	4.119e^-4	0.881	INTRON lilli
2L	7912562	2L_7912562_SNP [dm3] 2L_7912562_SNP [dm6]	A	C	4.131e^-4	0.882	INTRON Snoo
2L	13257430	2L_13257430_SNP [dm3] 2L_13257430_SNP [dm6]	T	C	4.144e^-4	0.883	UPSTREAM CG31851 DOWNSTREAM CG31728 INTERGENIC	TF binding site mE1_TFBS_cad
3R	22439145	3R_22439145_SNP [dm3] 3R_26613423_SNP [dm6]	G	T	4.157e^-4	0.883	INTERGENIC
3R	13071040	3R_13071040_SNP [dm3] 3R_17245318_SNP [dm6]	T	G	4.162e^-4	0.883	INTRON beat-IIb
2L	10871927	2L_10871927_INS [dm3] 2L_10871927_INS [dm6]	T	TAAACAAACAGG...	4.164e^-4	0.883	UPSTREAM CR45454 DOWNSTREAM CR45453 INTERGENIC
3R	8399100	3R_8399100_SNP [dm3] 3R_12573378_SNP [dm6]	G	T	4.174e^-4	0.883	INTRON Octbeta2R
2R	11846146	2R_11846146_SNP [dm3] 2R_15958641_SNP [dm6]	T	C	4.179e^-4	0.883	SYNONYMOUS_CODING Strn-Mlck DOWNSTREAM Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3908346	3L_3908346_SNP [dm3] 3L_3908346_SNP [dm6]	G	A	4.182e^-4	0.883	SYNONYMOUS_CODING mge UTR_3_PRIME mge DOWNSTREAM ida
3L	12717034	3L_12717034_SNP [dm3] 3L_12723934_SNP [dm6]	C	A	4.186e^-4	0.883	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19038071	3R_19038071_SNP [dm3] 3R_23212349_SNP [dm6]	A	G	4.192e^-4	0.883	INTRON cnc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	15378415	3R_15378415_SNP [dm3] 3R_19552693_SNP [dm6]	A	T	4.193e^-4	0.883	INTRON Dys
2R	4094322	2R_4094322_SNP [dm3] 2R_8206817_SNP [dm6]	G	A	4.202e^-4	0.883	INTRON LRP1
2R	16803159	2R_16803159_SNP [dm3] 2R_20915654_SNP [dm6]	G	T	4.204e^-4	0.883	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	17454055	2L_17454055_SNP [dm3] 2L_17454055_SNP [dm6]	A	G	4.204e^-4	0.883	NON_SYNONYMOUS_CODING CG5050 DOWNSTREAM CG6639
2R	15544621	2R_15544621_SNP [dm3] 2R_19657116_SNP [dm6]	A	C	4.209e^-4	0.883	UPSTREAM CG15125 EXON CR44214
2L	10087628	2L_10087628_SNP [dm3] 2L_10087628_SNP [dm6]	T	C	4.212e^-4	0.883	INTRON CG44153	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5290072	X_5290072_SNP [dm3] X_5396039_SNP [dm6]	T	C	4.216e^-4	0.883	INTRON SK
2L	16185390	2L_16185390_SNP [dm3] 2L_16185390_SNP [dm6]	G	C	4.218e^-4	0.883	SYNONYMOUS_CODING Ca-alpha1D	TF binding site mE1_TFBS_cad
X	8909210	X_8909210_SNP [dm3] X_9015177_SNP [dm6]	C	A	4.232e^-4	0.883	INTRON CR43836 & 1 other
3L	2958960	3L_2958960_SNP [dm3] 3L_2958960_SNP [dm6]	G	T	4.235e^-4	0.883	UTR_3_PRIME Shab DOWNSTREAM CG34025
2L	10249617	2L_10249617_SNP [dm3] 2L_10249617_SNP [dm6]	T	A	4.237e^-4	0.883	START_GAINED bsk UTR_5_PRIME bsk UPSTREAM bsk INTRON bsk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	21944744	X_21944744_SNP [dm3] X_22542908_SNP [dm6]	C	T	4.237e^-4	0.883	NON_SYNONYMOUS_CODING CG17599 DOWNSTREAM CG17600	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17442806	2L_17442806_SNP [dm3] 2L_17442806_SNP [dm6]	T	G	4.239e^-4	0.883	SYNONYMOUS_CODING dl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	2782559	2R_2782559_SNP [dm3] 2R_6895054_SNP [dm6]	A	G	4.244e^-4	0.883	INTRON CG30158	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13920585	3L_13920585_SNP [dm3] 3L_13927485_SNP [dm6]	A	G	4.270e^-4	0.884	SYNONYMOUS_CODING CG8833
3L	15745374	3L_15745374_SNP [dm3] 3L_15752274_SNP [dm6]	C	T	4.288e^-4	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	7943004	3L_7943004_SNP [dm3] 3L_7949904_SNP [dm6]	C	T	4.288e^-4	0.884	INTRON exex
3R	13070702	3R_13070702_SNP [dm3] 3R_17244980_SNP [dm6]	A	G	4.292e^-4	0.884	INTRON beat-IIb
2L	4845609	2L_4845609_SNP [dm3] 2L_4845609_SNP [dm6]	C	T	4.301e^-4	0.884	INTRON mxt	TF binding site mE1_TFBS_chinmo
3L	12817739	3L_12817739_SNP [dm3] 3L_12824639_SNP [dm6]	G	A	4.302e^-4	0.884	UTR_3_PRIME CG42588 DOWNSTREAM CG10960
3L	12932554	3L_12932554_SNP [dm3] 3L_12939454_SNP [dm6]	T	A	4.304e^-4	0.884	INTERGENIC
3L	11803958	3L_11803958_SNP [dm3] 3L_11810858_SNP [dm6]	T	A	4.309e^-4	0.884	NON_SYNONYMOUS_CODING CG42255
3L	4387930	3L_4387930_SNP [dm3] 3L_4387930_SNP [dm6]	T	A	4.310e^-4	0.884	INTRON slow
X	15880584	X_15880584_SNP [dm3] X_15986551_SNP [dm6]	C	G	4.316e^-4	0.884	SYNONYMOUS_CODING CG9172 DOWNSTREAM eIF5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
X	18742316	X_18742316_SNP [dm3] X_18848283_SNP [dm6]	G	A	4.316e^-4	0.884	SYNONYMOUS_CODING CG7280 UPSTREAM CG34422 INTRON CG34422
3L	8805807	3L_8805807_SNP [dm3] 3L_8812707_SNP [dm6]	T	A	4.321e^-4	0.884	INTERGENIC
X	20942798	X_20942798_SNP [dm3] X_21071771_SNP [dm6]	A	G	4.328e^-4	0.884	INTRON bves	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	17821560	3L_17821560_SNP [dm3] 3L_17828460_SNP [dm6]	G	T	4.330e^-4	0.884	INTRON Grd
3L	18259131	3L_18259131_SNP [dm3] 3L_18266031_SNP [dm6]	A	G	4.332e^-4	0.884	INTERGENIC
2L	20438951	2L_20438951_SNP [dm3] 2L_20438951_SNP [dm6]	C	G	4.336e^-4	0.884	UPSTREAM CR43607 INTRON CG31688	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13071800	3R_13071800_SNP [dm3] 3R_17246078_SNP [dm6]	G	A	4.344e^-4	0.884	INTRON beat-IIb
2L	15775612	2L_15775612_SNP [dm3] 2L_15775612_SNP [dm6]	A	C	4.344e^-4	0.884	DOWNSTREAM CG43760 INTERGENIC
X	20566641	X_20566641_SNP [dm3] X_20695614_SNP [dm6]	C	T	4.349e^-4	0.884	INTRON run	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	11288437	2L_11288437_SNP [dm3] 2L_11288437_SNP [dm6]	G	A	4.350e^-4	0.884	INTERGENIC
2L	5377780	2L_5377780_SNP [dm3] 2L_5377780_SNP [dm6]	G	A	4.358e^-4	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	15002372	2R_15002372_SNP [dm3] 2R_19114867_SNP [dm6]	G	A	4.364e^-4	0.884	INTRON 5-HT1A
3L	14499614	3L_14499614_SNP [dm3] 3L_14506514_SNP [dm6]	C	T	4.367e^-4	0.884	INTRON bbg
2L	8333448	2L_8333448_SNP [dm3] 2L_8333448_SNP [dm6]	T	C	4.369e^-4	0.884	DOWNSTREAM CG14275 INTERGENIC
2L	3606253	2L_3606253_SNP [dm3] 2L_3606253_SNP [dm6]	G	C	4.375e^-4	0.884	INTRON odd	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	2862053	2L_2862053_SNP [dm3] 2L_2862053_SNP [dm6]	T	C	4.384e^-4	0.884	UPSTREAM CG2991 INTRON CG2991	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	5250117	X_5250117_SNP [dm3] X_5356084_SNP [dm6]	T	C	4.386e^-4	0.884	INTRON SK
2R	12711023	2R_12711023_SNP [dm3] 2R_16823518_SNP [dm6]	T	C	4.389e^-4	0.884	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	9617259	3R_9617259_SNP [dm3] 3R_13791537_SNP [dm6]	G	T	4.390e^-4	0.884	INTERGENIC
3L	15165024	3L_15165024_SNP [dm3] 3L_15171924_SNP [dm6]	A	T	4.397e^-4	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14874154	3L_14874154_SNP [dm3] 3L_14881054_SNP [dm6]	T	G	4.398e^-4	0.884	INTRON CG17839
3L	18216698	3L_18216698_SNP [dm3] 3L_18223598_SNP [dm6]	A	C	4.403e^-4	0.884	INTERGENIC	TF binding site mE1_TFBS_inv
3L	17168003	3L_17168003_SNP [dm3] 3L_17174903_SNP [dm6]	T	G	4.409e^-4	0.884	INTRON Rbp6
3L	7080469	3L_7080469_SNP [dm3] 3L_7087369_SNP [dm6]	T	C	4.422e^-4	0.884	UPSTREAM Cpr65Ea DOWNSTREAM Cpr65Eb INTERGENIC	TF binding site mE1_TFBS_inv
3L	16982414	3L_16982414_SNP [dm3] 3L_16989314_SNP [dm6]	A	T	4.423e^-4	0.884	INTRON Exn
2R	7361373	2R_7361373_SNP [dm3] 2R_11473868_SNP [dm6]	G	C	4.430e^-4	0.884	UPSTREAM inv INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	5463564	X_5463564_SNP [dm3] X_5569531_SNP [dm6]	T	C	4.432e^-4	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	12214913	2R_12214913_DEL [dm3] 2R_16327408_DEL [dm6]	GT	G	4.437e^-4	0.884	INTRON Vha44
3L	4387996	3L_4387996_SNP [dm3] 3L_4387996_SNP [dm6]	G	C	4.438e^-4	0.884	INTRON slow
2L	7158535	2L_7158535_SNP [dm3] 2L_7158535_SNP [dm6]	C	T	4.444e^-4	0.884	UPSTREAM Pvf3 INTERGENIC
2L	14788674	2L_14788674_DEL [dm3] 2L_14788674_DEL [dm6]	TGT	T	4.444e^-4	0.884	INTERGENIC
3L	14833470	3L_14833470_SNP [dm3] 3L_14840370_SNP [dm6]	C	T	4.445e^-4	0.884	INTRON CG17839
X	21116986	X_21116986_SNP [dm3] X_21245959_SNP [dm6]	T	G	4.453e^-4	0.885	INTRON CG32521
3L	17821506	3L_17821506_SNP [dm3] 3L_17828406_SNP [dm6]	G	C	4.456e^-4	0.885	INTRON Grd
3R	8096290	3R_8096290_SNP [dm3] 3R_12270568_SNP [dm6]	C	A	4.468e^-4	0.885	UPSTREAM CG17738 DOWNSTREAM CR44039 INTRON svp
3R	15377529	3R_15377529_SNP [dm3] 3R_19551807_SNP [dm6]	T	G	4.468e^-4	0.885	INTRON Dys
3R	15379266	3R_15379266_SNP [dm3] 3R_19553544_SNP [dm6]	A	C	4.479e^-4	0.885	INTRON Dys
2L	7618262	2L_7618262_SNP [dm3] 2L_7618262_SNP [dm6]	G	T	4.479e^-4	0.885	INTERGENIC
2L	9530773	2L_9530773_SNP [dm3] 2L_9530773_SNP [dm6]	T	G	4.487e^-4	0.886	INTRON Oatp30B
2R	10348798	2R_10348798_SNP [dm3] 2R_14461293_SNP [dm6]	C	G	4.501e^-4	0.886	INTRON Oaz	TF binding site mE1_TFBS_cad
2L	4206870	2L_4206870_SNP [dm3] 2L_4206870_SNP [dm6]	G	A	4.505e^-4	0.886	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3L	21338536	3L_21338536_SNP [dm3] 3L_21345436_SNP [dm6]	T	C	4.514e^-4	0.886	NON_SYNONYMOUS_CODING ebd2 INTRON CG32436	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	11550668	3R_11550668_SNP [dm3] 3R_15724946_SNP [dm6]	A	C	4.516e^-4	0.886	INTERGENIC
3L	10244228	3L_10244228_SNP [dm3] 3L_10251128_SNP [dm6]	C	A	4.519e^-4	0.886	INTERGENIC
2L	6020821	2L_6020821_SNP [dm3] 2L_6020821_SNP [dm6]	C	G	4.521e^-4	0.886	UPSTREAM CG13996 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15911409	3L_15911409_SNP [dm3] 3L_15918309_SNP [dm6]	A	G	4.522e^-4	0.886	INTRON sff
2L	8837448	2L_8837448_SNP [dm3] 2L_8837448_SNP [dm6]	G	T	4.523e^-4	0.886	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14501834	3L_14501834_SNP [dm3] 3L_14508734_SNP [dm6]	A	T	4.543e^-4	0.886	NON_SYNONYMOUS_CODING bbg
2L	974115	2L_974115_SNP [dm3] 2L_974115_SNP [dm6]	C	A	4.555e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	10540508	3L_10540508_SNP [dm3] 3L_10547408_SNP [dm6]	T	C	4.562e^-4	0.886	INTRON A2bp1
3L	14499510	3L_14499510_INS [dm3] 3L_14506410_INS [dm6]	T	TT	4.565e^-4	0.886	INTRON bbg
2L	6765373	2L_6765373_SNP [dm3] 2L_6765373_SNP [dm6]	G	A	4.572e^-4	0.886	NON_SYNONYMOUS_CODING CG11321
3L	21101511	3L_21101511_DEL [dm3] 3L_21108411_DEL [dm6]	GG	G	4.573e^-4	0.886	INTRON ko	regulatory region REDfly_CRMs
3L	7302109	3L_7302109_SNP [dm3] 3L_7309009_SNP [dm6]	G	T	4.586e^-4	0.886	INTRON unc-13-4A
2L	7240366	2L_7240366_SNP [dm3] 2L_7240366_SNP [dm6]	G	T	4.587e^-4	0.886	UTR_5_PRIME Ndae1 INTRON Ndae1
3R	13738701	3R_13738701_SNP [dm3] 3R_17912979_SNP [dm6]	T	G	4.595e^-4	0.886	DOWNSTREAM CG43445 INTRON Rim
2R	7423433	2R_7423433_SNP [dm3] 2R_11535928_SNP [dm6]	A	C	4.596e^-4	0.886	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	15156587	X_15156587_SNP [dm3] X_15262554_SNP [dm6]	A	G	4.600e^-4	0.886	INTERGENIC
3R	18596059	3R_18596059_SNP [dm3] 3R_22770337_SNP [dm6]	G	A	4.603e^-4	0.886	UPSTREAM CG43092 & 1 other DOWNSTREAM CG43094 & 1 other INTRON Usp12-46 & 1 other
2L	8147282	2L_8147282_SNP [dm3] 2L_8147282_SNP [dm6]	G	T	4.620e^-4	0.886	UPSTREAM CG31606 INTRON CG8552 & 1 other	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18271918	3L_18271918_SNP [dm3] 3L_18278818_SNP [dm6]	T	A	4.625e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	13696469	3R_13696469_SNP [dm3] 3R_17870747_SNP [dm6]	C	G	4.630e^-4	0.886	SYNONYMOUS_CODING tinc UTR_3_PRIME tinc	TF binding site mE1_TFBS_chinmo
3L	19579753	3L_19579753_SNP [dm3] 3L_19586653_SNP [dm6]	C	T	4.630e^-4	0.886	SYNONYMOUS_CODING CG9330 UPSTREAM CG9231	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_sens
2L	8878900	2L_8878900_SNP [dm3] 2L_8878900_SNP [dm6]	T	C	4.636e^-4	0.886	INTERGENIC	TF binding site mE1_TFBS_cad
3L	8977839	3L_8977839_SNP [dm3] 3L_8984739_SNP [dm6]	G	T	4.654e^-4	0.886	INTRON Galk
3R	15837467	3R_15837467_SNP [dm3] 3R_20011745_SNP [dm6]	T	C	4.659e^-4	0.886	DOWNSTREAM CG17190 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7820461	3L_7820461_SNP [dm3] 3L_7827361_SNP [dm6]	T	C	4.659e^-4	0.886	INTRON Pdp1
3R	15333259	3R_15333259_SNP [dm3] 3R_19507537_SNP [dm6]	T	A	4.662e^-4	0.886	INTRON Dys
2R	12259579	2R_12259579_INS [dm3] 2R_16372074_INS [dm6]	T	TCCCT	4.665e^-4	0.886	INTERGENIC
X	2666831	X_2666831_SNP [dm3] X_2772798_SNP [dm6]	C	T	4.665e^-4	0.886	INTRON kirre
X	6108645	X_6108645_SNP [dm3] X_6214612_SNP [dm6]	T	G	4.665e^-4	0.886	INTERGENIC
2L	9527943	2L_9527943_SNP [dm3] 2L_9527943_SNP [dm6]	T	A	4.672e^-4	0.886	UPSTREAM CG31883 INTRON Oatp30B
3R	23956309	3R_23956309_DEL [dm3] 3R_28130587_DEL [dm6]	TCCTGTCGCTGCCAGAAGGA...	T	4.675e^-4	0.886	INTERGENIC
3L	6470092	3L_6470092_SNP [dm3] 3L_6476992_SNP [dm6]	T	C	4.675e^-4	0.886	INTRON CG42747
3L	10919146	3L_10919146_SNP [dm3] 3L_10926046_SNP [dm6]	C	A	4.677e^-4	0.886	INTERGENIC
2L	3508851	2L_3508851_SNP [dm3] 2L_3508851_SNP [dm6]	T	A	4.684e^-4	0.886	UPSTREAM CR45300 & 1 other DOWNSTREAM CG31954 EXON CR45299
2L	7788529	2L_7788529_SNP [dm3] 2L_7788529_SNP [dm6]	A	G	4.693e^-4	0.886	INTRON CG7149
X	19194882	X_19194882_SNP [dm3] X_19300849_SNP [dm6]	T	G	4.698e^-4	0.886	DOWNSTREAM CG8051 & 1 other INTERGENIC
3L	10922037	3L_10922037_SNP [dm3] 3L_10928937_SNP [dm6]	T	G	4.712e^-4	0.886	INTERGENIC
2R	18025426	2R_18025426_SNP [dm3] 2R_22137921_SNP [dm6]	C	T	4.712e^-4	0.886	START_GAINED a UTR_5_PRIME a UPSTREAM CG11269 INTRON a
2R	8706645	2R_8706645_SNP [dm3] 2R_12819140_SNP [dm6]	T	A	4.716e^-4	0.886	INTERGENIC
2L	3047386	2L_3047386_SNP [dm3] 2L_3047386_SNP [dm6]	T	A	4.720e^-4	0.886	SYNONYMOUS_CODING v_2_k05816 DOWNSTREAM CR43708	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11275980	3L_11275980_SNP [dm3] 3L_11282880_SNP [dm6]	G	A	4.721e^-4	0.886	INTERGENIC	TF binding site mE1_TFBS_inv
2R	20779963	2R_20779963_SNP [dm3] 2R_24892440_SNP [dm6]	G	A	4.724e^-4	0.886	UTR_5_PRIME NaCP60E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	14874168	3L_14874168_SNP [dm3] 3L_14881068_SNP [dm6]	A	G	4.729e^-4	0.886	INTRON CG17839
3L	15266335	3L_15266335_SNP [dm3] 3L_15273235_SNP [dm6]	C	A	4.736e^-4	0.886	INTERGENIC
2L	7753641	2L_7753641_SNP [dm3] 2L_7753641_SNP [dm6]	T	A	4.748e^-4	0.886	UPSTREAM CG7203 & 1 other DOWNSTREAM CR45718 INTERGENIC
X	5243178	X_5243178_SNP [dm3] X_5349145_SNP [dm6]	C	T	4.750e^-4	0.886	INTRON SK
3R	16668001	3R_16668001_INS [dm3] 3R_20842279_INS [dm6]	A	AGT	4.755e^-4	0.886	UTR_5_PRIME CG15695

By genomic position
Variant impact
Gene name

mn_AggressionScore phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results