DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.937e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.02276
In_3R_Mo	0.04939

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2096 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	6941278	3L_6941278_SNP [dm3] 3L_6948178_SNP [dm6]	C	T	3.223e^-7	0.242	INTRON tow
3L	8165601	3L_8165601_SNP [dm3] 3L_8172501_SNP [dm6]	C	T	3.672e^-7	0.242	INTRON RecQ4	TF binding site BDTNP1_TFBS_twi
3L	8165585	3L_8165585_SNP [dm3] 3L_8172485_SNP [dm6]	G	A	4.291e^-7	0.242	INTRON RecQ4	TF binding site BDTNP1_TFBS_twi
3L	14359613	3L_14359613_SNP [dm3] 3L_14366513_SNP [dm6]	G	A	7.922e^-7	0.242	INTRON fz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
3L	6941284	3L_6941284_SNP [dm3] 3L_6948184_SNP [dm6]	T	C	9.770e^-7	0.242	INTRON tow
3R	14086481	3R_14086481_SNP [dm3] 3R_18260759_SNP [dm6]	A	G	1.061e^-6	0.242	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	14086486	3R_14086486_SNP [dm3] 3R_18260764_SNP [dm6]	T	C	1.061e^-6	0.242	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	14086487	3R_14086487_SNP [dm3] 3R_18260765_SNP [dm6]	A	T	1.061e^-6	0.242	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	8165729	3L_8165729_SNP [dm3] 3L_8172629_SNP [dm6]	T	C	1.997e^-6	0.404	NON_SYNONYMOUS_CODING RecQ4
3R	6038931	3R_6038931_SNP [dm3] 3R_10213209_SNP [dm6]	G	A	2.474e^-6	0.451	UPSTREAM Timp INTRON Syn	TF binding site BDTNP1_TFBS_z
3L	6941288	3L_6941288_SNP [dm3] 3L_6948188_SNP [dm6]	C	A	2.737e^-6	0.453	INTRON tow
3R	13847623	3R_13847623_SNP [dm3] 3R_18021901_SNP [dm6]	T	G	3.245e^-6	0.492	DOWNSTREAM DNaseII INTRON CG7785	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
X	9439632	X_9439632_SNP [dm3] X_9545599_SNP [dm6]	T	C	3.780e^-6	0.529	INTRON CG32700
3L	8821736	3L_8821736_SNP [dm3] 3L_8828636_SNP [dm6]	G	C	4.335e^-6	0.56	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
X	14512200	X_14512200_SNP [dm3] X_14618167_SNP [dm6]	G	A	4.614e^-6	0.56	INTRON NetA
3L	6941338	3L_6941338_SNP [dm3] 3L_6948238_SNP [dm6]	T	G	5.930e^-6	0.675	INTRON tow
2R	7045699	2R_7045699_SNP [dm3] 2R_11158194_SNP [dm6]	A	T	7.078e^-6	0.758	UPSTREAM shn INTRON CG13229
X	10329980	X_10329980_SNP [dm3] X_10435947_SNP [dm6]	C	T	8.773e^-6	0.778	INTRON CG32683
2R	16394972	2R_16394972_INS [dm3] 2R_20507467_INS [dm6]	G	GGA	8.871e^-6	0.778	DOWNSTREAM CR44645 INTERGENIC
3R	15335263	3R_15335263_SNP [dm3] 3R_19509541_SNP [dm6]	C	T	9.455e^-6	0.778	INTRON Dys
2L	5539400	2L_5539400_INS [dm3] 2L_5539400_INS [dm6]	A	TTAT	9.670e^-6	0.778	UTR_3_PRIME Hel25E UPSTREAM CG14015 DOWNSTREAM Hel25E
3R	23884924	3R_23884924_INS [dm3] 3R_28059202_INS [dm6]	A	AAT	1.012e^-5	0.778	INTRON CG34362
X	10330013	X_10330013_SNP [dm3] X_10435980_SNP [dm6]	G	A	1.021e^-5	0.778	INTRON CG32683
3L	20452276	3L_20452276_SNP [dm3] 3L_20459176_SNP [dm6]	G	A	1.026e^-5	0.778	SYNONYMOUS_CODING CG5195	TF binding site mE1_TFBS_sens
3R	14086469	3R_14086469_SNP [dm3] 3R_18260747_SNP [dm6]	G	A	1.121e^-5	0.797	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	10329977	X_10329977_SNP [dm3] X_10435944_SNP [dm6]	G	A	1.139e^-5	0.797	INTRON CG32683
3R	15335158	3R_15335158_SNP [dm3] 3R_19509436_SNP [dm6]	G	T	1.202e^-5	0.81	INTRON Dys	TF binding site BDTNP1_TFBS_dl
3L	7418739	3L_7418739_SNP [dm3] 3L_7425639_SNP [dm6]	A	G	1.352e^-5	0.812	INTRON CG42458
3R	26586738	3R_26586738_SNP [dm3] 3R_30761016_SNP [dm6]	G	A	1.388e^-5	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	13847681	3R_13847681_SNP [dm3] 3R_18021959_SNP [dm6]	C	A	1.668e^-5	0.812	DOWNSTREAM DNaseII INTRON CG7785	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	14304528	3L_14304528_SNP [dm3] 3L_14311428_SNP [dm6]	T	A	1.710e^-5	0.812	INTRON fz
2L	5529273	2L_5529273_SNP [dm3] 2L_5529273_SNP [dm6]	C	A	1.716e^-5	0.812	NON_SYNONYMOUS_CODING CG31915 INTRON Cap-D3	TF binding site mE1_TFBS_sens
3R	10019258	3R_10019258_SNP [dm3] 3R_14193536_SNP [dm6]	C	T	1.792e^-5	0.812	INTRON Dop1R1
X	6121792	X_6121792_SNP [dm3] X_6227759_SNP [dm6]	A	G	1.806e^-5	0.812	SYNONYMOUS_CODING CG14446	TF binding site mE1_TFBS_sens
X	14512283	X_14512283_SNP [dm3] X_14618250_SNP [dm6]	C	T	1.898e^-5	0.812	INTRON NetA
2L	8574719	2L_8574719_SNP [dm3] 2L_8574719_SNP [dm6]	T	C	1.956e^-5	0.812	INTRON Sema-1a
3R	14086335	3R_14086335_SNP [dm3] 3R_18260613_SNP [dm6]	C	T	2.013e^-5	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	6941269	3L_6941269_SNP [dm3] 3L_6948169_SNP [dm6]	T	G	2.028e^-5	0.812	INTRON tow
3R	15335395	3R_15335395_SNP [dm3] 3R_19509673_SNP [dm6]	G	A	2.045e^-5	0.812	INTRON Dys
3L	14304520	3L_14304520_SNP [dm3] 3L_14311420_SNP [dm6]	T	A	2.064e^-5	0.812	INTRON fz
3R	15334348	3R_15334348_SNP [dm3] 3R_19508626_SNP [dm6]	G	A	2.136e^-5	0.812	UPSTREAM Dys INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	15420129	X_15420129_DEL [dm3] X_15526096_DEL [dm6]	GA	G	2.279e^-5	0.812	INTRON Ac13E
3R	17023367	3R_17023367_DEL [dm3] 3R_21197645_DEL [dm6]	CC	C	2.290e^-5	0.812	INTRON SNF4Agamma
2R	19083570	2R_19083570_SNP [dm3] 2R_23196047_SNP [dm6]	C	A	2.298e^-5	0.812	INTRON CG34371	TF binding site BDTNP1_TFBS_twi
3R	10792059	3R_10792059_MNP [dm3] 3R_14966337_MNP [dm6]	TTTTTTT	GGTAAAC	2.298e^-5	0.812	INTERGENIC
3L	14304529	3L_14304529_SNP [dm3] 3L_14311429_SNP [dm6]	T	C	2.313e^-5	0.812	INTRON fz
3R	26571027	3R_26571027_SNP [dm3] 3R_30745305_SNP [dm6]	A	C	2.319e^-5	0.812	UPSTREAM Npc2g DOWNSTREAM CG15543 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	1934453	2L_1934453_SNP [dm3] 2L_1934453_SNP [dm6]	A	G	2.391e^-5	0.812	INTRON CG7337	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6941023	3L_6941023_SNP [dm3] 3L_6947923_SNP [dm6]	C	T	2.591e^-5	0.812	SPLICE_SITE_REGION tow INTRON tow
3R	26673129	3R_26673129_SNP [dm3] 3R_30847407_SNP [dm6]	A	G	2.596e^-5	0.812	INTERGENIC
3L	14304537	3L_14304537_SNP [dm3] 3L_14311437_SNP [dm6]	G	A	2.709e^-5	0.812	INTRON fz
X	10329994	X_10329994_SNP [dm3] X_10435961_SNP [dm6]	C	T	2.780e^-5	0.812	INTRON CG32683
3R	14458388	3R_14458388_SNP [dm3] 3R_18632666_SNP [dm6]	G	T	2.817e^-5	0.812	INTRON qin & 1 other
3R	22624942	3R_22624942_SNP [dm3] 3R_26799220_SNP [dm6]	G	T	2.881e^-5	0.812	UTR_5_PRIME Tl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	23915084	3R_23915084_SNP [dm3] 3R_28089362_SNP [dm6]	T	G	2.924e^-5	0.812	UTR_3_PRIME CG34362
2L	20422456	2L_20422456_SNP [dm3] 2L_20422456_SNP [dm6]	G	A	2.956e^-5	0.812	DOWNSTREAM snoRNA:Psi18S-640f & 4 others INTRON Arpc2	TF binding site mE1_TFBS_kn
3R	13620350	3R_13620350_SNP [dm3] 3R_17794628_SNP [dm6]	G	T	3.026e^-5	0.812	UPSTREAM CG7713 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	5426727	2L_5426727_SNP [dm3] 2L_5426727_SNP [dm6]	T	A	3.037e^-5	0.812	INTERGENIC
3R	22658298	3R_22658298_SNP [dm3] 3R_26832576_SNP [dm6]	G	C	3.084e^-5	0.812	INTRON Tl
3L	9230749	3L_9230749_SNP [dm3] 3L_9237649_SNP [dm6]	A	C	3.291e^-5	0.812	INTERGENIC
2L	1136489	2L_1136489_SNP [dm3] 2L_1136489_SNP [dm6]	A	T	3.293e^-5	0.812	INTRON CG4577
2R	7651359	2R_7651359_SNP [dm3] 2R_11763854_SNP [dm6]	C	T	3.307e^-5	0.812	INTRON ths
3R	15334577	3R_15334577_SNP [dm3] 3R_19508855_SNP [dm6]	C	T	3.314e^-5	0.812	UPSTREAM Dys INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	17595350	3R_17595350_SNP [dm3] 3R_21769628_SNP [dm6]	T	C	3.367e^-5	0.812	SYNONYMOUS_CODING Burs DOWNSTREAM CG42335 & 1 other
X	20370474	X_20370474_SNP [dm3] X_20499447_SNP [dm6]	A	G	3.415e^-5	0.812	INTRON RhoGAP19D
3R	9759415	3R_9759415_SNP [dm3] 3R_13933693_SNP [dm6]	T	C	3.565e^-5	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	8662192	2L_8662192_SNP [dm3] 2L_8662192_SNP [dm6]	G	A	3.617e^-5	0.812	INTRON Sema-1a
3R	10629418	3R_10629418_SNP [dm3] 3R_14803696_SNP [dm6]	G	A	3.625e^-5	0.812	SYNONYMOUS_CODING CG14857 DOWNSTREAM btsz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1040585	3L_1040585_SNP [dm3] 3L_1040585_SNP [dm6]	T	C	3.706e^-5	0.812	INTRON bab1	TF binding site mE1_TFBS_cad
3R	12668337	3R_12668337_SNP [dm3] 3R_16842615_SNP [dm6]	A	G	3.775e^-5	0.812	INTRON iab-8	TF binding site BDTNP1_TFBS_twi
3R	9612637	3R_9612637_SNP [dm3] 3R_13786915_SNP [dm6]	G	C	3.783e^-5	0.812	UPSTREAM CR45590 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16316038	2R_16316038_SNP [dm3] 2R_20428533_SNP [dm6]	G	T	3.804e^-5	0.812	INTRON CG12484
3R	26591803	3R_26591803_SNP [dm3] 3R_30766081_SNP [dm6]	G	A	3.805e^-5	0.812	UTR_5_PRIME zfh1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3R	15334341	3R_15334341_SNP [dm3] 3R_19508619_SNP [dm6]	A	T	3.869e^-5	0.812	UPSTREAM Dys INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	2785659	X_2785659_INS [dm3] X_2891626_INS [dm6]	A	TT	4.004e^-5	0.812	INTRON kirre & 1 other
X	7758843	X_7758843_SNP [dm3] X_7864810_SNP [dm6]	T	C	4.021e^-5	0.812	DOWNSTREAM Ir7b INTERGENIC
3L	5898027	3L_5898027_SNP [dm3] 3L_5904927_SNP [dm6]	C	T	4.160e^-5	0.812	SYNONYMOUS_CODING CG10486 UTR_3_PRIME CG10486 UPSTREAM CG32413
X	10329895	X_10329895_DEL [dm3] X_10435862_DEL [dm6]	CTC	C	4.175e^-5	0.812	INTRON CG32683
2R	14991990	2R_14991990_DEL [dm3] 2R_19104485_DEL [dm6]	ATATAAAACCG...	A	4.229e^-5	0.812	INTRON 5-HT1A
X	10330005	X_10330005_SNP [dm3] X_10435972_SNP [dm6]	G	C	4.266e^-5	0.812	INTRON CG32683
3L	14304533	3L_14304533_SNP [dm3] 3L_14311433_SNP [dm6]	A	C	4.353e^-5	0.812	INTRON fz
3R	23941134	3R_23941134_SNP [dm3] 3R_28115412_SNP [dm6]	C	T	4.358e^-5	0.812	INTERGENIC
3R	15551730	3R_15551730_SNP [dm3] 3R_19726008_SNP [dm6]	C	A	4.363e^-5	0.812	INTERGENIC
2R	19083468	2R_19083468_SNP [dm3] 2R_23195945_SNP [dm6]	C	T	4.379e^-5	0.812	INTRON CG34371	TF binding site BDTNP1_TFBS_twi
3R	10822437	3R_10822437_SNP [dm3] 3R_14996715_SNP [dm6]	A	T	4.401e^-5	0.812	INTERGENIC
3L	14325199	3L_14325199_SNP [dm3] 3L_14332099_SNP [dm6]	A	G	4.409e^-5	0.812	INTRON fz
2L	2527298	2L_2527298_SNP [dm3] 2L_2527298_SNP [dm6]	C	T	4.431e^-5	0.812	INTERGENIC	TF binding site mE1_TFBS_cad
3L	6151486	3L_6151486_SNP [dm3] 3L_6158386_SNP [dm6]	C	T	4.451e^-5	0.812	INTRON Cpr65Ay
3R	18276260	3R_18276260_SNP [dm3] 3R_22450538_SNP [dm6]	C	A	4.540e^-5	0.812	INTRON CG34376	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	9525021	X_9525021_SNP [dm3] X_9630988_SNP [dm6]	C	T	4.591e^-5	0.812	SYNONYMOUS_CODING l_1_G0232 UTR_5_PRIME l_1_G0232	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10628865	3R_10628865_SNP [dm3] 3R_14803143_SNP [dm6]	G	A	4.632e^-5	0.812	NON_SYNONYMOUS_CODING CG14857 DOWNSTREAM btsz	TF binding site mE1_TFBS_cad
X	13714877	X_13714877_SNP [dm3] X_13820844_SNP [dm6]	T	A	4.647e^-5	0.812	INTRON Clic	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	2354277	2L_2354277_SNP [dm3] 2L_2354277_SNP [dm6]	A	C	4.717e^-5	0.812	SYNONYMOUS_CODING eys INTRON CG9967	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17505122	2L_17505122_SNP [dm3] 2L_17505122_SNP [dm6]	C	T	4.724e^-5	0.812	SYNONYMOUS_CODING Dhc36C	TF binding site mE1_TFBS_sens
X	7256198	X_7256198_SNP [dm3] X_7362165_SNP [dm6]	G	A	4.765e^-5	0.812	INTRON CG1677 & 1 other
X	18380790	X_18380790_DEL [dm3] X_18486757_DEL [dm6]	TA	T	4.832e^-5	0.812	UTR_5_PRIME psh DOWNSTREAM CG15046
3L	20453219	3L_20453219_SNP [dm3] 3L_20460119_SNP [dm6]	T	C	4.858e^-5	0.812	UPSTREAM CG5195 & 1 other INTRON CG5195
X	11231672	X_11231672_SNP [dm3] X_11337639_SNP [dm6]	T	A	4.877e^-5	0.812	SYNONYMOUS_CODING Kap3
X	3578051	X_3578051_SNP [dm3] X_3684018_SNP [dm6]	T	C	4.910e^-5	0.812	INTRON Mnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19576165	2R_19576165_SNP [dm3] 2R_23688642_SNP [dm6]	C	T	4.934e^-5	0.812	SYNONYMOUS_CODING Pal2 DOWNSTREAM St3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15323605	2R_15323605_SNP [dm3] 2R_19436100_SNP [dm6]	T	C	4.934e^-5	0.812	SYNONYMOUS_CODING Fak	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10936033	3R_10936033_SNP [dm3] 3R_15110311_SNP [dm6]	C	T	5.013e^-5	0.812	INTRON CG42788	TF binding site BDTNP1_TFBS_twi
3R	13513054	3R_13513054_SNP [dm3] 3R_17687332_SNP [dm6]	A	C	5.059e^-5	0.812	UPSTREAM CG31249 DOWNSTREAM osa INTERGENIC
X	2785662	X_2785662_SNP [dm3] X_2891629_SNP [dm6]	T	C	5.130e^-5	0.812	INTRON kirre & 1 other
2R	16394978	2R_16394978_SNP [dm3] 2R_20507473_SNP [dm6]	T	C	5.234e^-5	0.812	DOWNSTREAM CR44645 INTERGENIC
3R	26585721	3R_26585721_SNP [dm3] 3R_30759999_SNP [dm6]	T	A	5.252e^-5	0.812	INTERGENIC
3R	26589808	3R_26589808_SNP [dm3] 3R_30764086_SNP [dm6]	C	A	5.312e^-5	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	8481333	2L_8481333_SNP [dm3] 2L_8481333_SNP [dm6]	A	T	5.407e^-5	0.812	UPSTREAM tRNA:CR31896 DOWNSTREAM tRNA:CR31892 INTRON d
3R	23884454	3R_23884454_SNP [dm3] 3R_28058732_SNP [dm6]	G	C	5.413e^-5	0.812	INTRON CG34362
2L	5557689	2L_5557689_SNP [dm3] 2L_5557689_SNP [dm6]	C	T	5.745e^-5	0.812	SYNONYMOUS_CODING GluRIIA
3R	10276096	3R_10276096_SNP [dm3] 3R_14450374_SNP [dm6]	G	A	5.866e^-5	0.812	INTRON cv-c
2L	491883	2L_491883_SNP [dm3] 2L_491883_SNP [dm6]	T	A	5.886e^-5	0.812	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14357683	2L_14357683_SNP [dm3] 2L_14357683_SNP [dm6]	C	T	5.970e^-5	0.812	SYNONYMOUS_CODING Rab14 UPSTREAM CR44851	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23885525	3R_23885525_SNP [dm3] 3R_28059803_SNP [dm6]	G	A	5.982e^-5	0.812	INTRON CG34362
2L	8481226	2L_8481226_DEL [dm3] 2L_8481226_DEL [dm6]	TT	T	5.994e^-5	0.812	UPSTREAM tRNA:CR31896 DOWNSTREAM tRNA:CR31892 INTRON d
2L	8481294	2L_8481294_SNP [dm3] 2L_8481294_SNP [dm6]	G	T	5.994e^-5	0.812	UPSTREAM tRNA:CR31896 DOWNSTREAM tRNA:CR31892 INTRON d
3R	18471970	3R_18471970_SNP [dm3] 3R_22646248_SNP [dm6]	A	C	5.997e^-5	0.812	INTRON CG45058
3R	23925854	3R_23925854_SNP [dm3] 3R_28100132_SNP [dm6]	G	C	6.080e^-5	0.812	INTERGENIC
3R	13513066	3R_13513066_SNP [dm3] 3R_17687344_SNP [dm6]	G	T	6.091e^-5	0.812	UPSTREAM CG31249 DOWNSTREAM osa INTERGENIC
3L	19892938	3L_19892938_SNP [dm3] 3L_19899838_SNP [dm6]	A	T	6.121e^-5	0.812	INTRON Mi-2 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	22622231	3R_22622231_SNP [dm3] 3R_26796509_SNP [dm6]	A	T	6.182e^-5	0.812	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3L	9230715	3L_9230715_SNP [dm3] 3L_9237615_SNP [dm6]	A	G	6.324e^-5	0.812	UPSTREAM CG4483 INTERGENIC
X	12186127	X_12186127_SNP [dm3] X_12292094_SNP [dm6]	A	G	6.365e^-5	0.812	INTRON Ten-a
3R	17612277	3R_17612277_SNP [dm3] 3R_21786555_SNP [dm6]	G	C	6.390e^-5	0.812	UTR_3_PRIME CASK UPSTREAM CRG
3R	6219069	3R_6219069_SNP [dm3] 3R_10393347_SNP [dm6]	C	T	6.457e^-5	0.812	INTRON cwo
3L	5303036	3L_5303036_SNP [dm3] 3L_5309936_SNP [dm6]	A	G	6.486e^-5	0.812	INTERGENIC	TF binding site mE1_TFBS_HSA
X	6121971	X_6121971_SNP [dm3] X_6227938_SNP [dm6]	G	A	6.498e^-5	0.812	INTRON CG14446	TF binding site mE1_TFBS_sens
3R	19812016	3R_19812016_SNP [dm3] 3R_23986294_SNP [dm6]	G	A	6.559e^-5	0.812	SYNONYMOUS_CODING CG13603 UPSTREAM CG5902	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	19074406	2R_19074406_DEL [dm3] 2R_23186883_DEL [dm6]	TACT	T	6.635e^-5	0.812	INTRON CG34371	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	13512923	3R_13512923_DEL [dm3] 3R_17687201_DEL [dm6]	TACTG	T	6.705e^-5	0.812	UPSTREAM CG31249 DOWNSTREAM osa INTERGENIC
2L	17367102	2L_17367102_SNP [dm3] 2L_17367102_SNP [dm6]	C	T	6.771e^-5	0.812	DOWNSTREAM Lrch INTERGENIC
2R	12045134	2R_12045134_SNP [dm3] 2R_16157629_SNP [dm6]	T	C	6.862e^-5	0.812	NON_SYNONYMOUS_CODING CG10734 INTRON lbk
2R	17749622	2R_17749622_SNP [dm3] 2R_21862117_SNP [dm6]	T	G	6.867e^-5	0.812	DOWNSTREAM CG9294 INTERGENIC
2L	19079874	2L_19079874_SNP [dm3] 2L_19079874_SNP [dm6]	T	C	6.874e^-5	0.812	UTR_3_PRIME Lim3 UPSTREAM CG10700	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1195279	3L_1195279_SNP [dm3] 3L_1195279_SNP [dm6]	C	G	6.926e^-5	0.812	NON_SYNONYMOUS_CODING LysX
3R	22623791	3R_22623791_SNP [dm3] 3R_26798069_SNP [dm6]	A	T	6.928e^-5	0.812	UPSTREAM Tl INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	5539417	2L_5539417_SNP [dm3] 2L_5539417_SNP [dm6]	T	G	6.940e^-5	0.812	UTR_3_PRIME Hel25E UPSTREAM CG14015 DOWNSTREAM Hel25E
2R	6290937	2R_6290937_SNP [dm3] 2R_10403432_SNP [dm6]	C	T	6.997e^-5	0.812	INTRON CG42732
3R	22241992	3R_22241992_SNP [dm3] 3R_26416270_SNP [dm6]	C	T	7.043e^-5	0.812	DOWNSTREAM CG5432 INTERGENIC
3R	13513050	3R_13513050_SNP [dm3] 3R_17687328_SNP [dm6]	A	G	7.044e^-5	0.812	UPSTREAM CG31249 DOWNSTREAM osa INTERGENIC
X	4923090	X_4923090_SNP [dm3] X_5029057_SNP [dm6]	G	A	7.075e^-5	0.812	INTRON CR44833
3R	18228916	3R_18228916_SNP [dm3] 3R_22403194_SNP [dm6]	A	G	7.130e^-5	0.812	INTRON CG13856
3R	22624034	3R_22624034_SNP [dm3] 3R_26798312_SNP [dm6]	A	T	7.133e^-5	0.812	UPSTREAM Tl INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	18228936	3R_18228936_SNP [dm3] 3R_22403214_SNP [dm6]	C	T	7.203e^-5	0.812	INTRON CG13856
2L	5529271	2L_5529271_SNP [dm3] 2L_5529271_SNP [dm6]	G	C	7.281e^-5	0.812	NON_SYNONYMOUS_CODING CG31915 INTRON Cap-D3	TF binding site mE1_TFBS_sens
X	12190110	X_12190110_SNP [dm3] X_12296077_SNP [dm6]	G	A	7.292e^-5	0.812	INTRON Ten-a
3R	10936035	3R_10936035_SNP [dm3] 3R_15110313_SNP [dm6]	G	T	7.295e^-5	0.812	INTRON CG42788	TF binding site BDTNP1_TFBS_twi
3L	9230720	3L_9230720_SNP [dm3] 3L_9237620_SNP [dm6]	G	T	7.324e^-5	0.812	UPSTREAM CG4483 INTERGENIC
3L	22385943	3L_22385943_SNP [dm3] 3L_22392843_SNP [dm6]	C	G	7.342e^-5	0.812	INTRON Ten-m
2L	10663892	2L_10663892_SNP [dm3] 2L_10663892_SNP [dm6]	A	G	7.382e^-5	0.812	INTRON CG31871	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17930391	2R_17930391_SNP [dm3] 2R_22042886_SNP [dm6]	T	A	7.391e^-5	0.812	UTR_5_PRIME PpD5
3L	6202659	3L_6202659_SNP [dm3] 3L_6209559_SNP [dm6]	G	A	7.392e^-5	0.812	SYNONYMOUS_CODING LanA	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	3160450	3L_3160450_SNP [dm3] 3L_3160450_SNP [dm6]	G	A	7.415e^-5	0.812	NON_SYNONYMOUS_CODING pfk UPSTREAM NDUFS3	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	6281789	X_6281789_SNP [dm3] X_6387756_SNP [dm6]	A	T	7.434e^-5	0.812	INTERGENIC
2L	10663937	2L_10663937_SNP [dm3] 2L_10663937_SNP [dm6]	T	C	7.494e^-5	0.812	INTRON CG31871	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	9483953	X_9483953_SNP [dm3] X_9589920_SNP [dm6]	T	C	7.550e^-5	0.812	DOWNSTREAM CR45542 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3R	13513073	3R_13513073_SNP [dm3] 3R_17687351_SNP [dm6]	C	A	7.556e^-5	0.812	UPSTREAM CG31249 DOWNSTREAM osa INTERGENIC
3L	5397195	3L_5397195_SNP [dm3] 3L_5404095_SNP [dm6]	T	C	7.597e^-5	0.812	INTERGENIC
X	2785630	X_2785630_SNP [dm3] X_2891597_SNP [dm6]	A	G	7.657e^-5	0.812	INTRON kirre & 1 other
2R	16576049	2R_16576049_DEL [dm3] 2R_20688544_DEL [dm6]	CCACACTTTTCC...	C	7.709e^-5	0.812	INTERGENIC
2L	17367070	2L_17367070_SNP [dm3] 2L_17367070_SNP [dm6]	C	T	7.709e^-5	0.812	DOWNSTREAM Lrch INTERGENIC
2L	17367073	2L_17367073_SNP [dm3] 2L_17367073_SNP [dm6]	C	T	7.709e^-5	0.812	DOWNSTREAM Lrch INTERGENIC
2L	17367081	2L_17367081_SNP [dm3] 2L_17367081_SNP [dm6]	C	A	7.709e^-5	0.812	DOWNSTREAM Lrch INTERGENIC
3L	19892936	3L_19892936_SNP [dm3] 3L_19899836_SNP [dm6]	G	A	7.756e^-5	0.812	INTRON Mi-2 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	13513083	3R_13513083_DEL [dm3] 3R_17687361_DEL [dm6]	AT	A	7.758e^-5	0.812	UPSTREAM CG31249 DOWNSTREAM osa INTERGENIC
3R	13513711	3R_13513711_SNP [dm3] 3R_17687989_SNP [dm6]	C	G	8.016e^-5	0.812	UTR_3_PRIME osa UPSTREAM CG31249
X	13715540	X_13715540_SNP [dm3] X_13821507_SNP [dm6]	G	T	8.033e^-5	0.812	INTRON Clic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3R	15334367	3R_15334367_SNP [dm3] 3R_19508645_SNP [dm6]	T	A	8.055e^-5	0.812	UPSTREAM Dys INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	17758847	3R_17758847_SNP [dm3] 3R_21933125_SNP [dm6]	C	T	8.146e^-5	0.812	INTERGENIC
3L	9230717	3L_9230717_SNP [dm3] 3L_9237617_SNP [dm6]	A	T	8.190e^-5	0.812	UPSTREAM CG4483 INTERGENIC
3R	11550315	3R_11550315_SNP [dm3] 3R_15724593_SNP [dm6]	G	C	8.221e^-5	0.812	INTERGENIC
2R	11025386	2R_11025386_SNP [dm3] 2R_15137881_SNP [dm6]	G	A	8.323e^-5	0.812	INTRON chn
2R	11025391	2R_11025391_SNP [dm3] 2R_15137886_SNP [dm6]	C	G	8.323e^-5	0.812	INTRON chn
2L	13822419	2L_13822419_SNP [dm3] 2L_13822419_SNP [dm6]	T	A	8.336e^-5	0.812	INTRON b
3L	8165724	3L_8165724_SNP [dm3] 3L_8172624_SNP [dm6]	T	A	8.362e^-5	0.812	SYNONYMOUS_CODING RecQ4
3R	13513377	3R_13513377_SNP [dm3] 3R_17687655_SNP [dm6]	A	C	8.521e^-5	0.812	UPSTREAM CG31249 DOWNSTREAM osa INTERGENIC
3R	26585612	3R_26585612_SNP [dm3] 3R_30759890_SNP [dm6]	T	G	8.596e^-5	0.812	INTERGENIC
2R	20359079	2R_20359079_SNP [dm3] 2R_24471556_SNP [dm6]	A	G	8.681e^-5	0.812	INTRON CG13579
3L	20556578	3L_20556578_SNP [dm3] 3L_20563478_SNP [dm6]	T	A	8.684e^-5	0.812	INTERGENIC
X	8328043	X_8328043_INS [dm3] X_8434010_INS [dm6]	T	TT	8.704e^-5	0.812	UTR_3_PRIME CG12125 UPSTREAM CG32712 DOWNSTREAM Trf2 & 1 other
3R	7741925	3R_7741925_SNP [dm3] 3R_11916203_SNP [dm6]	A	T	8.738e^-5	0.812	INTRON Cad87A
3L	8749727	3L_8749727_SNP [dm3] 3L_8756627_SNP [dm6]	G	A	8.771e^-5	0.812	NON_SYNONYMOUS_CODING CG6576 INTRON Fhos
2L	18528489	2L_18528489_SNP [dm3] 2L_18528489_SNP [dm6]	G	A	8.784e^-5	0.812	INTRON CG10211
3L	8660100	3L_8660100_SNP [dm3] 3L_8667000_SNP [dm6]	T	C	8.820e^-5	0.812	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	9196922	3L_9196922_SNP [dm3] 3L_9203822_SNP [dm6]	T	C	8.859e^-5	0.812	INTRON Slc45-1
2L	19927541	2L_19927541_SNP [dm3] 2L_19927541_SNP [dm6]	A	T	8.863e^-5	0.812	INTRON sick
3R	13512937	3R_13512937_INS [dm3] 3R_17687215_INS [dm6]	A	AG	8.879e^-5	0.812	UPSTREAM CG31249 DOWNSTREAM osa INTERGENIC
X	15416966	X_15416966_SNP [dm3] X_15522933_SNP [dm6]	G	A	8.960e^-5	0.812	UPSTREAM Ac13E INTRON Ac13E
3R	11356213	3R_11356213_SNP [dm3] 3R_15530491_SNP [dm6]	A	C	8.989e^-5	0.812	UTR_3_PRIME CG31296	TF binding site mE1_TFBS_cad
3R	25875785	3R_25875785_SNP [dm3] 3R_30050063_SNP [dm6]	C	T	9.047e^-5	0.812	INTRON CG15528 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18745607	3R_18745607_SNP [dm3] 3R_22919885_SNP [dm6]	C	G	9.056e^-5	0.812	INTRON klg
X	13715430	X_13715430_SNP [dm3] X_13821397_SNP [dm6]	A	C	9.153e^-5	0.812	INTRON Clic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2L	9870967	2L_9870967_SNP [dm3] 2L_9870967_SNP [dm6]	C	T	9.318e^-5	0.812	INTRON nAChRalpha6
3L	12022723	3L_12022723_SNP [dm3] 3L_12029623_SNP [dm6]	C	T	9.325e^-5	0.812	INTRON rols
2R	10110736	2R_10110736_SNP [dm3] 2R_14223231_SNP [dm6]	T	C	9.409e^-5	0.812	INTRON CG8468	TF binding site mE1_TFBS_sens
3R	22651033	3R_22651033_SNP [dm3] 3R_26825311_SNP [dm6]	C	A	9.599e^-5	0.812	INTRON Tl
3R	14309213	3R_14309213_SNP [dm3] 3R_18483491_SNP [dm6]	G	C	9.617e^-5	0.812	INTRON fru
3L	6151439	3L_6151439_SNP [dm3] 3L_6158339_SNP [dm6]	G	C	9.658e^-5	0.812	SYNONYMOUS_CODING Cpr65Ay UPSTREAM CG13297
3L	6151458	3L_6151458_SNP [dm3] 3L_6158358_SNP [dm6]	A	T	9.658e^-5	0.812	UPSTREAM CG13297 INTRON Cpr65Ay
3L	6151478	3L_6151478_SNP [dm3] 3L_6158378_SNP [dm6]	G	C	9.658e^-5	0.812	INTRON Cpr65Ay
3L	6151484	3L_6151484_SNP [dm3] 3L_6158384_SNP [dm6]	A	G	9.658e^-5	0.812	INTRON Cpr65Ay
X	17220665	X_17220665_SNP [dm3] X_17326632_SNP [dm6]	T	A	9.683e^-5	0.812	INTERGENIC
X	4273590	X_4273590_SNP [dm3] X_4379557_SNP [dm6]	A	G	9.729e^-5	0.812	INTERGENIC	TF binding site mE1_TFBS_sens
2L	16652961	2L_16652961_SNP [dm3] 2L_16652961_SNP [dm6]	C	T	9.796e^-5	0.812	INTRON CG42389
2L	802629	2L_802629_SNP [dm3] 2L_802629_SNP [dm6]	G	A	9.832e^-5	0.812	INTERGENIC
2L	17367122	2L_17367122_SNP [dm3] 2L_17367122_SNP [dm6]	A	C	9.957e^-5	0.812	DOWNSTREAM Lrch INTERGENIC
2L	5538701	2L_5538701_SNP [dm3] 2L_5538701_SNP [dm6]	T	G	1.005e^-4	0.812	DOWNSTREAM Hel25E INTRON CG14015	TF binding site mE1_TFBS_chinmo
2R	13798097	2R_13798097_SNP [dm3] 2R_17910592_SNP [dm6]	G	T	1.013e^-4	0.812	INTRON Elk
3L	6498080	3L_6498080_SNP [dm3] 3L_6504980_SNP [dm6]	A	C	1.016e^-4	0.812	INTRON sfl	TF binding site BDTNP1_TFBS_dl
3R	13371894	3R_13371894_SNP [dm3] 3R_17546172_SNP [dm6]	T	G	1.034e^-4	0.812	INTRON Prx3	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	15323698	2R_15323698_SNP [dm3] 2R_19436193_SNP [dm6]	C	T	1.036e^-4	0.812	SYNONYMOUS_CODING Fak	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	16100697	X_16100697_SNP [dm3] X_16206664_SNP [dm6]	C	T	1.044e^-4	0.812	INTERGENIC
2R	19083617	2R_19083617_SNP [dm3] 2R_23196094_SNP [dm6]	C	T	1.048e^-4	0.812	INTRON CG34371	TF binding site BDTNP1_TFBS_twi
2R	7045161	2R_7045161_SNP [dm3] 2R_11157656_SNP [dm6]	A	G	1.051e^-4	0.812	INTRON CG13229
3L	5997712	3L_5997712_SNP [dm3] 3L_6004612_SNP [dm6]	C	T	1.055e^-4	0.812	INTRON PVRAP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8573502	2L_8573502_SNP [dm3] 2L_8573502_SNP [dm6]	A	G	1.060e^-4	0.812	INTRON Sema-1a
2L	14129828	2L_14129828_SNP [dm3] 2L_14129828_SNP [dm6]	G	T	1.061e^-4	0.812	INTERGENIC
3R	25851526	3R_25851526_INS [dm3] 3R_30025804_INS [dm6]	CT	TGTTTCATGTTCATGTTTC...	1.062e^-4	0.812	INTRON Axn
X	13714848	X_13714848_INS [dm3] X_13820815_INS [dm6]	A	ATGTCTTTTAAGTATTGGA...	1.073e^-4	0.812	INTRON Clic	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	26589703	3R_26589703_SNP [dm3] 3R_30763981_SNP [dm6]	G	A	1.075e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	16720854	3R_16720854_SNP [dm3] 3R_20895132_SNP [dm6]	T	C	1.076e^-4	0.812	UTR_3_PRIME CG10830
X	10329958	X_10329958_SNP [dm3] X_10435925_SNP [dm6]	G	A	1.081e^-4	0.812	INTRON CG32683
2L	10707061	2L_10707061_SNP [dm3] 2L_10707061_SNP [dm6]	C	T	1.082e^-4	0.812	UPSTREAM Lip2 INTRON Lip2	TF binding site mE1_TFBS_inv
2L	19927549	2L_19927549_SNP [dm3] 2L_19927549_SNP [dm6]	C	T	1.082e^-4	0.812	INTRON sick
3L	6941229	3L_6941229_SNP [dm3] 3L_6948129_SNP [dm6]	C	T	1.082e^-4	0.812	INTRON tow
3R	6219637	3R_6219637_SNP [dm3] 3R_10393915_SNP [dm6]	C	T	1.085e^-4	0.812	INTRON cwo
2R	19083661	2R_19083661_DEL [dm3] 2R_23196138_DEL [dm6]	TATATGTGCCT...	T	1.087e^-4	0.812	INTRON CG34371	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10936052	3R_10936052_SNP [dm3] 3R_15110330_SNP [dm6]	C	G	1.109e^-4	0.812	INTRON CG42788	TF binding site BDTNP1_TFBS_twi
2L	19927544	2L_19927544_SNP [dm3] 2L_19927544_SNP [dm6]	C	T	1.115e^-4	0.812	INTRON sick
3R	13512913	3R_13512913_SNP [dm3] 3R_17687191_SNP [dm6]	A	G	1.115e^-4	0.812	UPSTREAM CG31249 DOWNSTREAM osa INTERGENIC
3L	10867576	3L_10867576_SNP [dm3] 3L_10874476_SNP [dm6]	A	T	1.124e^-4	0.812	UTR_3_PRIME tna
2L	6054226	2L_6054226_DEL [dm3] 2L_6054226_DEL [dm6]	CTC	C	1.132e^-4	0.812	UPSTREAM CG13995 DOWNSTREAM CG9135 INTERGENIC
3R	15334264	3R_15334264_SNP [dm3] 3R_19508542_SNP [dm6]	C	T	1.133e^-4	0.812	UPSTREAM Dys INTRON Dys
3R	6042390	3R_6042390_SNP [dm3] 3R_10216668_SNP [dm6]	A	G	1.145e^-4	0.812	INTRON Syn
3R	25521633	3R_25521633_SNP [dm3] 3R_29695911_SNP [dm6]	C	T	1.148e^-4	0.812	SYNONYMOUS_CODING dmrt99B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5572665	2L_5572665_SNP [dm3] 2L_5572665_SNP [dm6]	C	A	1.152e^-4	0.812	INTERGENIC
3L	14375411	3L_14375411_SNP [dm3] 3L_14382311_SNP [dm6]	G	A	1.152e^-4	0.812	SYNONYMOUS_CODING CG43120
3R	10122895	3R_10122895_SNP [dm3] 3R_14297173_SNP [dm6]	A	C	1.160e^-4	0.812	INTRON CG12207
3R	11357685	3R_11357685_SNP [dm3] 3R_15531963_SNP [dm6]	C	A	1.163e^-4	0.812	UPSTREAM CG31296 DOWNSTREAM CG18522 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	17396164	2L_17396164_SNP [dm3] 2L_17396164_SNP [dm6]	G	T	1.165e^-4	0.812	INTRON CLIP-190	TF binding site mE1_TFBS_zfh1
3R	13513102	3R_13513102_SNP [dm3] 3R_17687380_SNP [dm6]	T	A	1.169e^-4	0.812	UPSTREAM CG31249 DOWNSTREAM osa INTERGENIC
X	13715424	X_13715424_SNP [dm3] X_13821391_SNP [dm6]	A	C	1.170e^-4	0.812	INTRON Clic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
X	13714861	X_13714861_SNP [dm3] X_13820828_SNP [dm6]	A	C	1.172e^-4	0.812	INTRON Clic	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	19734288	2L_19734288_SNP [dm3] 2L_19734288_SNP [dm6]	T	G	1.188e^-4	0.812	SYNONYMOUS_CODING CG10462	TF binding site mE1_TFBS_sens
2L	19734291	2L_19734291_SNP [dm3] 2L_19734291_SNP [dm6]	G	A	1.188e^-4	0.812	SYNONYMOUS_CODING CG10462	TF binding site mE1_TFBS_sens
2L	19734318	2L_19734318_SNP [dm3] 2L_19734318_SNP [dm6]	C	A	1.188e^-4	0.812	SYNONYMOUS_CODING CG10462	TF binding site mE1_TFBS_sens
3R	10122892	3R_10122892_SNP [dm3] 3R_14297170_SNP [dm6]	G	T	1.189e^-4	0.812	INTRON CG12207
3L	2026765	3L_2026765_DEL [dm3] 3L_2026765_DEL [dm6]	ATTGTATA	A	1.193e^-4	0.812	UPSTREAM CG34259 INTERGENIC
3L	19921440	3L_19921440_SNP [dm3] 3L_19928340_SNP [dm6]	A	G	1.195e^-4	0.812	UPSTREAM RhoGDI INTRON CG8004	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	22401289	3L_22401289_SNP [dm3] 3L_22408189_SNP [dm6]	C	G	1.196e^-4	0.812	UPSTREAM Ten-m INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
2R	12045139	2R_12045139_SNP [dm3] 2R_16157634_SNP [dm6]	C	T	1.197e^-4	0.812	SYNONYMOUS_CODING CG10734 INTRON lbk
3R	20510282	3R_20510282_SNP [dm3] 3R_24684560_SNP [dm6]	T	C	1.204e^-4	0.812	INTRON slo
3R	10628747	3R_10628747_SNP [dm3] 3R_14803025_SNP [dm6]	G	T	1.205e^-4	0.812	SYNONYMOUS_CODING CG14857
2L	17801726	2L_17801726_SNP [dm3] 2L_17801726_SNP [dm6]	T	C	1.208e^-4	0.812	NON_SYNONYMOUS_CODING CadN2
3R	10936045	3R_10936045_SNP [dm3] 3R_15110323_SNP [dm6]	A	G	1.212e^-4	0.812	INTRON CG42788	TF binding site BDTNP1_TFBS_twi
X	16566465	X_16566465_SNP [dm3] X_16672432_SNP [dm6]	C	A	1.217e^-4	0.812	INTRON CG13012
3L	2028042	3L_2028042_SNP [dm3] 3L_2028042_SNP [dm6]	C	T	1.223e^-4	0.812	NON_SYNONYMOUS_CODING CG34259
3L	3046973	3L_3046973_SNP [dm3] 3L_3046973_SNP [dm6]	T	G	1.227e^-4	0.812	UPSTREAM Sk2 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	1192833	3L_1192833_SNP [dm3] 3L_1192833_SNP [dm6]	A	C	1.227e^-4	0.812	SYNONYMOUS_CODING Trh	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	12189416	X_12189416_SNP [dm3] X_12295383_SNP [dm6]	T	G	1.227e^-4	0.812	INTRON Ten-a
3R	22668777	3R_22668777_SNP [dm3] 3R_26843055_SNP [dm6]	A	T	1.233e^-4	0.812	UTR_3_PRIME Lerp DOWNSTREAM Tl
3L	9758893	3L_9758893_SNP [dm3] 3L_9765793_SNP [dm6]	G	T	1.246e^-4	0.812	UTR_5_PRIME CG8177 INTRON CG8177
X	2911544	X_2911544_SNP [dm3] X_3017511_SNP [dm6]	C	T	1.249e^-4	0.812	INTRON kirre	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	16232491	2L_16232491_SNP [dm3] 2L_16232491_SNP [dm6]	A	G	1.250e^-4	0.812	INTRON CG42817	TF binding site BDTNP1_TFBS_slp1
3R	17612331	3R_17612331_SNP [dm3] 3R_21786609_SNP [dm6]	G	A	1.253e^-4	0.812	NON_SYNONYMOUS_CODING CASK UTR_3_PRIME CASK UPSTREAM CRG
X	5730814	X_5730814_SNP [dm3] X_5836781_SNP [dm6]	A	C	1.254e^-4	0.812	SYNONYMOUS_CODING CG15765	TF binding site mE1_TFBS_chinmo
3L	14273252	3L_14273252_SNP [dm3] 3L_14280152_SNP [dm6]	A	C	1.255e^-4	0.812	INTRON fz
2R	17930050	2R_17930050_SNP [dm3] 2R_22042545_SNP [dm6]	T	C	1.256e^-4	0.812	SYNONYMOUS_CODING PpD5
3L	17813306	3L_17813306_SNP [dm3] 3L_17820206_SNP [dm6]	A	T	1.264e^-4	0.812	UPSTREAM Ir75b DOWNSTREAM Ir75c INTERGENIC
3R	9612501	3R_9612501_SNP [dm3] 3R_13786779_SNP [dm6]	G	A	1.268e^-4	0.812	UPSTREAM CR45590 INTERGENIC
3R	23955675	3R_23955675_SNP [dm3] 3R_28129953_SNP [dm6]	C	T	1.269e^-4	0.812	INTERGENIC
3R	23955676	3R_23955676_DEL [dm3] 3R_28129954_DEL [dm6]	ACGCACAGCGTCGCTCAAAG...	A	1.269e^-4	0.812	INTERGENIC
3R	23955706	3R_23955706_SNP [dm3] 3R_28129984_SNP [dm6]	C	T	1.269e^-4	0.812	INTERGENIC
3R	23955713	3R_23955713_SNP [dm3] 3R_28129991_SNP [dm6]	G	T	1.269e^-4	0.812	INTERGENIC
2L	13839820	2L_13839820_SNP [dm3] 2L_13839820_SNP [dm6]	A	T	1.272e^-4	0.812	UTR_3_PRIME CG33307 DOWNSTREAM CG33307 INTRON CenG1A	TF binding site BDTNP1_TFBS_twi
3R	11550310	3R_11550310_SNP [dm3] 3R_15724588_SNP [dm6]	A	G	1.280e^-4	0.812	INTERGENIC
X	5730796	X_5730796_SNP [dm3] X_5836763_SNP [dm6]	C	T	1.284e^-4	0.812	SYNONYMOUS_CODING CG15765
2R	4086614	2R_4086614_SNP [dm3] 2R_8199109_SNP [dm6]	C	A	1.290e^-4	0.812	INTRON LRP1
2L	3481218	2L_3481218_SNP [dm3] 2L_3481218_SNP [dm6]	C	T	1.295e^-4	0.812	SYNONYMOUS_CODING CG15414	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5537910	2R_5537910_SNP [dm3] 2R_9650405_SNP [dm6]	C	A	1.300e^-4	0.812	INTRON Mmp2
X	2529192	X_2529192_SNP [dm3] X_2635159_SNP [dm6]	A	T	1.302e^-4	0.812	INTRON sgg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	14291566	3L_14291566_SNP [dm3] 3L_14298466_SNP [dm6]	G	A	1.304e^-4	0.812	INTRON fz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3L	898793	3L_898793_SNP [dm3] 3L_898793_SNP [dm6]	T	A	1.306e^-4	0.812	DOWNSTREAM CG34057 INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	481710	2L_481710_SNP [dm3] 2L_481710_SNP [dm6]	G	A	1.307e^-4	0.812	INTRON ush	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	16294264	3L_16294264_SNP [dm3] 3L_16301164_SNP [dm6]	C	T	1.312e^-4	0.812	UPSTREAM CG4982 INTERGENIC
2R	11044343	2R_11044343_SNP [dm3] 2R_15156838_SNP [dm6]	T	C	1.316e^-4	0.812	INTRON igl
X	16566932	X_16566932_SNP [dm3] X_16672899_SNP [dm6]	G	A	1.324e^-4	0.812	INTRON CG13012
2L	16390896	2L_16390896_SNP [dm3] 2L_16390896_SNP [dm6]	A	G	1.330e^-4	0.812	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	10629008	3R_10629008_SNP [dm3] 3R_14803286_SNP [dm6]	A	C	1.333e^-4	0.812	NON_SYNONYMOUS_CODING CG14857 DOWNSTREAM btsz	TF binding site mE1_TFBS_cad
3L	5698420	3L_5698420_SNP [dm3] 3L_5705320_SNP [dm6]	G	A	1.336e^-4	0.812	INTRON sif	TF binding site mE1_TFBS_cad
3L	601115	3L_601115_SNP [dm3] 3L_601115_SNP [dm6]	A	C	1.342e^-4	0.812	INTRON CG13893	TF binding site mE1_TFBS_inv
X	13714874	X_13714874_SNP [dm3] X_13820841_SNP [dm6]	G	A	1.344e^-4	0.812	INTRON Clic	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	9758879	3L_9758879_SNP [dm3] 3L_9765779_SNP [dm6]	T	C	1.349e^-4	0.812	UTR_5_PRIME CG8177 INTRON CG8177
3R	23955510	3R_23955510_SNP [dm3] 3R_28129788_SNP [dm6]	T	A	1.361e^-4	0.812	INTERGENIC
3R	23955708	3R_23955708_MNP [dm3] 3R_28129986_MNP [dm6]	GGGC	TTAT	1.361e^-4	0.812	INTERGENIC
3R	23955715	3R_23955715_DEL [dm3] 3R_28129993_DEL [dm6]	CGATGGCCG	A	1.361e^-4	0.812	INTERGENIC
3L	6022949	3L_6022949_SNP [dm3] 3L_6029849_SNP [dm6]	A	T	1.363e^-4	0.812	INTERGENIC
3L	6022953	3L_6022953_SNP [dm3] 3L_6029853_SNP [dm6]	C	T	1.363e^-4	0.812	INTERGENIC
2L	716756	2L_716756_SNP [dm3] 2L_716756_SNP [dm6]	C	T	1.368e^-4	0.812	INTERGENIC	TF binding site mE1_TFBS_Trl
3R	11968331	3R_11968331_SNP [dm3] 3R_16142609_SNP [dm6]	A	G	1.370e^-4	0.812	INTRON Sb
2R	17890798	2R_17890798_SNP [dm3] 2R_22003293_SNP [dm6]	C	T	1.370e^-4	0.812	INTRON CG34370	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	23972059	3R_23972059_INS [dm3] 3R_28146337_INS [dm6]	A	AT	1.372e^-4	0.812	UPSTREAM CG34354 INTERGENIC
3L	14320719	3L_14320719_SNP [dm3] 3L_14327619_SNP [dm6]	T	A	1.384e^-4	0.812	INTRON fz
3R	20510137	3R_20510137_SNP [dm3] 3R_24684415_SNP [dm6]	C	A	1.384e^-4	0.812	INTRON slo
2L	18366610	2L_18366610_SNP [dm3] 2L_18366610_SNP [dm6]	A	G	1.386e^-4	0.812	INTRON Fas3
3L	8728048	3L_8728048_SNP [dm3] 3L_8734948_SNP [dm6]	C	G	1.387e^-4	0.812	INTRON Prm	TF binding site mE1_TFBS_cad
3L	7144523	3L_7144523_SNP [dm3] 3L_7151423_SNP [dm6]	T	C	1.414e^-4	0.812	INTRON corn	TF binding site mE1_TFBS_HSA
2R	18739856	2R_18739856_SNP [dm3] 2R_22852333_SNP [dm6]	T	G	1.420e^-4	0.812	NON_SYNONYMOUS_CODING CG13531	TF binding site mE1_TFBS_chinmo
3R	23947752	3R_23947752_SNP [dm3] 3R_28122030_SNP [dm6]	A	T	1.424e^-4	0.812	INTERGENIC
3R	23966993	3R_23966993_SNP [dm3] 3R_28141271_SNP [dm6]	A	G	1.424e^-4	0.812	INTERGENIC
3L	8197818	3L_8197818_SNP [dm3] 3L_8204718_SNP [dm6]	C	A	1.426e^-4	0.812	INTERGENIC
2R	10373716	2R_10373716_DEL [dm3] 2R_14486211_DEL [dm6]	ATA	A	1.436e^-4	0.812	INTRON L	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	9645950	2R_9645950_SNP [dm3] 2R_13758445_SNP [dm6]	G	A	1.437e^-4	0.812	NON_SYNONYMOUS_CODING CG6280	TF binding site mE1_TFBS_HSA
3L	601121	3L_601121_SNP [dm3] 3L_601121_SNP [dm6]	T	C	1.442e^-4	0.812	INTRON CG13893
X	6281782	X_6281782_SNP [dm3] X_6387749_SNP [dm6]	C	T	1.445e^-4	0.812	INTERGENIC
3R	14086500	3R_14086500_SNP [dm3] 3R_18260778_SNP [dm6]	A	T	1.448e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	7068803	2R_7068803_SNP [dm3] 2R_11181298_SNP [dm6]	A	G	1.453e^-4	0.812	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	10147458	2L_10147458_SNP [dm3] 2L_10147458_SNP [dm6]	G	A	1.455e^-4	0.812	INTRON CG44153 & 1 other	TF binding site mE1_TFBS_cad
2R	12668012	2R_12668012_DEL [dm3] 2R_16780507_DEL [dm6]	CG	C	1.455e^-4	0.812	UTR_5_PRIME resilin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	14304503	3L_14304503_SNP [dm3] 3L_14311403_SNP [dm6]	G	C	1.458e^-4	0.812	INTRON fz
2L	18365404	2L_18365404_SNP [dm3] 2L_18365404_SNP [dm6]	G	C	1.465e^-4	0.812	INTRON Fas3
3R	10792096	3R_10792096_DEL [dm3] 3R_14966374_DEL [dm6]	CTGT	C	1.466e^-4	0.812	INTERGENIC
3R	10629681	3R_10629681_SNP [dm3] 3R_14803959_SNP [dm6]	A	G	1.468e^-4	0.812	SYNONYMOUS_CODING CG14857 DOWNSTREAM btsz	TF binding site mE1_TFBS_cad
3R	17088070	3R_17088070_SNP [dm3] 3R_21262348_SNP [dm6]	A	G	1.474e^-4	0.812	SYNONYMOUS_CODING ETHR INTRON ETHR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16881035	2R_16881035_SNP [dm3] 2R_20993530_SNP [dm6]	T	C	1.476e^-4	0.812	SYNONYMOUS_CODING dgt3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	12114643	3R_12114643_SNP [dm3] 3R_16288921_SNP [dm6]	A	T	1.497e^-4	0.812	UPSTREAM gish INTRON gish	TF binding site mE1_TFBS_inv
2L	8507624	2L_8507624_SNP [dm3] 2L_8507624_SNP [dm6]	A	G	1.501e^-4	0.812	UPSTREAM Dh31 INTERGENIC
3L	19896240	3L_19896240_SNP [dm3] 3L_19903140_SNP [dm6]	A	G	1.503e^-4	0.812	INTRON Mi-2 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14086449	3R_14086449_SNP [dm3] 3R_18260727_SNP [dm6]	C	T	1.504e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	24020708	3R_24020708_SNP [dm3] 3R_28194986_SNP [dm6]	T	G	1.509e^-4	0.812	INTRON CG34354
3L	4269764	3L_4269764_SNP [dm3] 3L_4269764_SNP [dm6]	A	G	1.522e^-4	0.812	INTRON CG1273	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	8507616	2L_8507616_SNP [dm3] 2L_8507616_SNP [dm6]	G	A	1.531e^-4	0.812	UPSTREAM Dh31 INTERGENIC
2L	16433535	2L_16433535_SNP [dm3] 2L_16433535_SNP [dm6]	A	C	1.532e^-4	0.812	INTRON CG5888
2L	16653016	2L_16653016_SNP [dm3] 2L_16653016_SNP [dm6]	T	A	1.535e^-4	0.812	INTRON CG42389
2R	19072664	2R_19072664_SNP [dm3] 2R_23185141_SNP [dm6]	A	G	1.535e^-4	0.812	SYNONYMOUS_CODING CG13539 INTRON CG34371	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19073300	2R_19073300_SNP [dm3] 2R_23185777_SNP [dm6]	G	C	1.535e^-4	0.812	DOWNSTREAM CG13539 INTRON CG34371	TF binding site mE1_TFBS_sens
3R	13480654	3R_13480654_SNP [dm3] 3R_17654932_SNP [dm6]	G	C	1.536e^-4	0.812	INTRON CG14322	TF binding site BDTNP1_TFBS_dl
3L	1040747	3L_1040747_SNP [dm3] 3L_1040747_SNP [dm6]	T	G	1.539e^-4	0.812	INTRON bab1
X	3595058	X_3595058_INS [dm3] X_3701025_INS [dm6]	A	AA	1.539e^-4	0.812	UTR_3_PRIME Mnt UPSTREAM CR45102 DOWNSTREAM Mnt
3R	26369409	3R_26369409_SNP [dm3] 3R_30543687_SNP [dm6]	G	T	1.540e^-4	0.812	INTRON tmod
2R	13383307	2R_13383307_SNP [dm3] 2R_17495802_SNP [dm6]	C	T	1.546e^-4	0.812	SYNONYMOUS_CODING CG30103	TF binding site mE1_TFBS_cad
2R	10622540	2R_10622540_SNP [dm3] 2R_14735035_SNP [dm6]	A	T	1.554e^-4	0.812	INTERGENIC
3R	11968352	3R_11968352_SNP [dm3] 3R_16142630_SNP [dm6]	A	G	1.565e^-4	0.812	INTRON Sb
3R	23972061	3R_23972061_SNP [dm3] 3R_28146339_SNP [dm6]	C	T	1.571e^-4	0.812	UPSTREAM CG34354 INTERGENIC
X	15416986	X_15416986_SNP [dm3] X_15522953_SNP [dm6]	A	T	1.573e^-4	0.812	UPSTREAM Ac13E INTRON Ac13E
2L	19927525	2L_19927525_SNP [dm3] 2L_19927525_SNP [dm6]	A	G	1.574e^-4	0.812	INTRON sick
3R	13371788	3R_13371788_SNP [dm3] 3R_17546066_SNP [dm6]	G	A	1.579e^-4	0.812	DOWNSTREAM SF1 INTRON Prx3	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	14299438	3L_14299438_SNP [dm3] 3L_14306338_SNP [dm6]	G	T	1.589e^-4	0.812	INTRON fz
3L	22383088	3L_22383088_SNP [dm3] 3L_22389988_SNP [dm6]	C	T	1.591e^-4	0.812	INTRON Ten-m
2R	1602098	2R_1602098_SNP [dm3] 2R_5714593_SNP [dm6]	A	G	1.593e^-4	0.812	INTRON ap
3L	2913710	3L_2913710_SNP [dm3] 3L_2913710_SNP [dm6]	C	A	1.594e^-4	0.812	INTRON Shab	TF binding site BDTNP1_TFBS_dl
3R	7878828	3R_7878828_SNP [dm3] 3R_12053106_SNP [dm6]	T	C	1.594e^-4	0.812	INTERGENIC
3L	5542307	3L_5542307_SNP [dm3] 3L_5549207_SNP [dm6]	G	C	1.598e^-4	0.812	INTRON CG10625
X	2785587	X_2785587_SNP [dm3] X_2891554_SNP [dm6]	C	T	1.604e^-4	0.812	INTRON kirre & 1 other
3L	14273181	3L_14273181_SNP [dm3] 3L_14280081_SNP [dm6]	G	A	1.612e^-4	0.812	INTRON fz
X	20370369	X_20370369_SNP [dm3] X_20499342_SNP [dm6]	G	T	1.616e^-4	0.812	INTRON RhoGAP19D
3R	10260770	3R_10260770_SNP [dm3] 3R_14435048_SNP [dm6]	A	G	1.616e^-4	0.812	INTRON cv-c
2L	18363932	2L_18363932_SNP [dm3] 2L_18363932_SNP [dm6]	G	A	1.617e^-4	0.812	INTRON Fas3	TF binding site BDTNP1_TFBS_dl
3L	1192758	3L_1192758_SNP [dm3] 3L_1192758_SNP [dm6]	T	G	1.621e^-4	0.812	SYNONYMOUS_CODING Trh	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6248369	2R_6248369_SNP [dm3] 2R_10360864_SNP [dm6]	A	G	1.621e^-4	0.812	DOWNSTREAM CG43396 INTRON CG42732
2L	13944371	2L_13944371_SNP [dm3] 2L_13944371_SNP [dm6]	C	T	1.623e^-4	0.812	DOWNSTREAM CG16884 INTRON Ance-3
2L	13944379	2L_13944379_SNP [dm3] 2L_13944379_SNP [dm6]	A	T	1.623e^-4	0.812	DOWNSTREAM CG16884 INTRON Ance-3
2R	14609486	2R_14609486_SNP [dm3] 2R_18721981_SNP [dm6]	G	A	1.626e^-4	0.812	INTRON Hs3st-A
3R	23972063	3R_23972063_INS [dm3] 3R_28146341_INS [dm6]	T	TATA	1.633e^-4	0.812	UPSTREAM CG34354 INTERGENIC
2L	448813	2L_448813_SNP [dm3] 2L_448813_SNP [dm6]	T	G	1.633e^-4	0.812	UTR_3_PRIME crq DOWNSTREAM ex
3L	9197111	3L_9197111_SNP [dm3] 3L_9204011_SNP [dm6]	T	A	1.645e^-4	0.812	INTRON Slc45-1	TF binding site mE1_TFBS_inv
2R	19333311	2R_19333311_SNP [dm3] 2R_23445788_SNP [dm6]	G	A	1.647e^-4	0.812	INTRON CG43795
3R	6036023	3R_6036023_SNP [dm3] 3R_10210301_SNP [dm6]	T	C	1.649e^-4	0.812	INTRON Syn & 1 other
3L	9197109	3L_9197109_SNP [dm3] 3L_9204009_SNP [dm6]	T	A	1.657e^-4	0.812	INTRON Slc45-1	TF binding site mE1_TFBS_inv
3R	27132565	3R_27132565_SNP [dm3] 3R_31306843_SNP [dm6]	G	T	1.665e^-4	0.812	INTERGENIC
2L	15029980	2L_15029980_SNP [dm3] 2L_15029980_SNP [dm6]	A	G	1.669e^-4	0.812	SPLICE_SITE_REGION GABA-B-R1 DOWNSTREAM CG33310 & 1 other INTRON GABA-B-R1
3R	6820989	3R_6820989_SNP [dm3] 3R_10995267_SNP [dm6]	A	C	1.672e^-4	0.812	INTRON CG34114
3L	5209960	3L_5209960_SNP [dm3] 3L_5216860_SNP [dm6]	A	G	1.672e^-4	0.812	INTRON shep
3L	899002	3L_899002_SNP [dm3] 3L_899002_SNP [dm6]	G	T	1.673e^-4	0.812	DOWNSTREAM CG34057 INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	899004	3L_899004_SNP [dm3] 3L_899004_SNP [dm6]	G	A	1.673e^-4	0.812	DOWNSTREAM CG34057 INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	23935036	3R_23935036_SNP [dm3] 3R_28109314_SNP [dm6]	C	G	1.681e^-4	0.813	INTERGENIC
3L	12304730	3L_12304730_SNP [dm3] 3L_12311630_SNP [dm6]	C	T	1.688e^-4	0.813	INTRON CG44355
3R	23884499	3R_23884499_SNP [dm3] 3R_28058777_SNP [dm6]	T	G	1.699e^-4	0.813	INTRON CG34362
2R	12149245	2R_12149245_SNP [dm3] 2R_16261740_SNP [dm6]	C	T	1.704e^-4	0.813	DOWNSTREAM fidipidine INTERGENIC
3L	6022932	3L_6022932_SNP [dm3] 3L_6029832_SNP [dm6]	G	A	1.705e^-4	0.813	INTERGENIC
2L	14206166	2L_14206166_SNP [dm3] 2L_14206166_SNP [dm6]	A	T	1.716e^-4	0.813	INTRON Dyrk2
2L	4278219	2L_4278219_SNP [dm3] 2L_4278219_SNP [dm6]	A	G	1.718e^-4	0.813	SYNONYMOUS_CODING Art2
2R	6248380	2R_6248380_SNP [dm3] 2R_10360875_SNP [dm6]	A	G	1.732e^-4	0.813	DOWNSTREAM CG43396 INTRON CG42732
3R	6043797	3R_6043797_SNP [dm3] 3R_10218075_SNP [dm6]	G	A	1.742e^-4	0.813	SYNONYMOUS_CODING Syn UTR_3_PRIME Syn	TF binding site mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
X	13714747	X_13714747_SNP [dm3] X_13820714_SNP [dm6]	T	G	1.743e^-4	0.813	INTRON Clic	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	10354214	3R_10354214_SNP [dm3] 3R_14528492_SNP [dm6]	G	A	1.744e^-4	0.813	INTRON Pde6
3L	2026678	3L_2026678_SNP [dm3] 3L_2026678_SNP [dm6]	G	A	1.744e^-4	0.813	UPSTREAM CG34259 INTERGENIC
3L	2026707	3L_2026707_SNP [dm3] 3L_2026707_SNP [dm6]	A	G	1.744e^-4	0.813	UPSTREAM CG34259 INTERGENIC
3R	10629178	3R_10629178_SNP [dm3] 3R_14803456_SNP [dm6]	G	T	1.748e^-4	0.813	NON_SYNONYMOUS_CODING CG14857 DOWNSTREAM btsz	TF binding site mE1_TFBS_cad
2L	13676603	2L_13676603_SNP [dm3] 2L_13676603_SNP [dm6]	G	T	1.755e^-4	0.813	DOWNSTREAM CG31814 INTERGENIC
2L	10147279	2L_10147279_SNP [dm3] 2L_10147279_SNP [dm6]	G	T	1.770e^-4	0.813	INTRON CG44153 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	22622213	3R_22622213_SNP [dm3] 3R_26796491_SNP [dm6]	G	A	1.775e^-4	0.813	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3R	6043764	3R_6043764_SNP [dm3] 3R_10218042_SNP [dm6]	C	T	1.776e^-4	0.813	SYNONYMOUS_CODING Syn UTR_3_PRIME Syn	TF binding site mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
2R	14605393	2R_14605393_SNP [dm3] 2R_18717888_SNP [dm6]	C	A	1.779e^-4	0.813	UPSTREAM Hs3st-A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	23900164	3R_23900164_SNP [dm3] 3R_28074442_SNP [dm6]	T	A	1.788e^-4	0.813	INTRON CG34362	TF binding site mE1_TFBS_chinmo
2R	19067671	2R_19067671_SNP [dm3] 2R_23180148_SNP [dm6]	T	C	1.788e^-4	0.813	INTRON CG34371
3L	16294513	3L_16294513_SNP [dm3] 3L_16301413_SNP [dm6]	G	T	1.789e^-4	0.813	UPSTREAM CG4982 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13143327	3L_13143327_SNP [dm3] 3L_13150227_SNP [dm6]	C	T	1.792e^-4	0.813	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	15941119	3L_15941119_SNP [dm3] 3L_15948019_SNP [dm6]	A	T	1.797e^-4	0.813	INTRON Pka-C3
2L	8481218	2L_8481218_SNP [dm3] 2L_8481218_SNP [dm6]	A	G	1.798e^-4	0.813	UPSTREAM tRNA:CR31896 DOWNSTREAM tRNA:CR31892 INTRON d
2L	8481221	2L_8481221_SNP [dm3] 2L_8481221_SNP [dm6]	C	T	1.798e^-4	0.813	UPSTREAM tRNA:CR31896 DOWNSTREAM tRNA:CR31892 INTRON d
X	20371986	X_20371986_SNP [dm3] X_20500959_SNP [dm6]	T	A	1.799e^-4	0.813	INTRON RhoGAP19D	TF binding site BDTNP1_TFBS_dl
3L	5396757	3L_5396757_SNP [dm3] 3L_5403657_SNP [dm6]	T	G	1.800e^-4	0.813	INTERGENIC
2R	2481551	2R_2481551_SNP [dm3] 2R_6594046_SNP [dm6]	C	T	1.807e^-4	0.814	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	12848975	3L_12848975_SNP [dm3] 3L_12855875_SNP [dm6]	G	C	1.813e^-4	0.814	SYNONYMOUS_CODING Ent3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17936223	2R_17936223_SNP [dm3] 2R_22048718_SNP [dm6]	C	G	1.822e^-4	0.814	INTERGENIC
2R	10110821	2R_10110821_SNP [dm3] 2R_14223316_SNP [dm6]	C	T	1.827e^-4	0.814	INTRON CG8468
3L	1195393	3L_1195393_SNP [dm3] 3L_1195393_SNP [dm6]	C	T	1.829e^-4	0.814	UPSTREAM LysX & 1 other INTERGENIC
3L	14368968	3L_14368968_SNP [dm3] 3L_14375868_SNP [dm6]	G	A	1.833e^-4	0.814	INTERGENIC	TF binding site mE1_TFBS_cad
3L	2025584	3L_2025584_SNP [dm3] 3L_2025584_SNP [dm6]	C	T	1.836e^-4	0.814	INTERGENIC
2L	17291069	2L_17291069_SNP [dm3] 2L_17291069_SNP [dm6]	A	C	1.844e^-4	0.814	DOWNSTREAM CG6380 INTERGENIC
X	3587656	X_3587656_SNP [dm3] X_3693623_SNP [dm6]	A	G	1.847e^-4	0.814	NON_SYNONYMOUS_CODING Mnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	10520255	2L_10520255_SNP [dm3] 2L_10520255_SNP [dm6]	A	C	1.850e^-4	0.814	DOWNSTREAM Lrr47 INTERGENIC
X	13714823	X_13714823_SNP [dm3] X_13820790_SNP [dm6]	T	C	1.852e^-4	0.814	INTRON Clic	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	9197113	3L_9197113_SNP [dm3] 3L_9204013_SNP [dm6]	T	A	1.859e^-4	0.816	INTRON Slc45-1	TF binding site mE1_TFBS_inv
3L	14249625	3L_14249625_SNP [dm3] 3L_14256525_SNP [dm6]	A	G	1.869e^-4	0.816	INTERGENIC
X	13352694	X_13352694_SNP [dm3] X_13458661_SNP [dm6]	T	C	1.879e^-4	0.816	UPSTREAM CG34324 INTRON Neto
3R	23932126	3R_23932126_SNP [dm3] 3R_28106404_SNP [dm6]	C	A	1.881e^-4	0.816	INTERGENIC
3L	606293	3L_606293_SNP [dm3] 3L_606293_SNP [dm6]	G	A	1.885e^-4	0.816	SPLICE_SITE_REGION Reg-2 INTRON Reg-2	TF binding site BDTNP1_TFBS_dl
2L	3144663	2L_3144663_SNP [dm3] 2L_3144663_SNP [dm6]	T	G	1.891e^-4	0.816	UTR_5_PRIME toc DOWNSTREAM CG12400	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	23930086	3R_23930086_SNP [dm3] 3R_28104364_SNP [dm6]	A	C	1.892e^-4	0.816	INTERGENIC
3L	22387832	3L_22387832_SNP [dm3] 3L_22394732_SNP [dm6]	G	C	1.893e^-4	0.816	INTRON Ten-m	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	13822326	2L_13822326_SNP [dm3] 2L_13822326_SNP [dm6]	G	A	1.895e^-4	0.816	INTRON b	TF binding site BDTNP1_TFBS_sna
3L	16317321	3L_16317321_SNP [dm3] 3L_16324221_SNP [dm6]	C	T	1.903e^-4	0.816	SYNONYMOUS_CODING CG13059 DOWNSTREAM CG13040
2R	19075224	2R_19075224_SNP [dm3] 2R_23187701_SNP [dm6]	C	G	1.905e^-4	0.816	INTRON CG34371	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	14280599	3L_14280599_SNP [dm3] 3L_14287499_SNP [dm6]	T	C	1.917e^-4	0.817	INTRON fz
3R	19568416	3R_19568416_DEL [dm3] 3R_23742694_DEL [dm6]	TAA	T	1.917e^-4	0.817	INTRON Hmgcr
3L	19837060	3L_19837060_SNP [dm3] 3L_19843960_SNP [dm6]	T	G	1.944e^-4	0.817	NON_SYNONYMOUS_CODING kto	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6436010	X_6436010_SNP [dm3] X_6541977_SNP [dm6]	A	G	1.953e^-4	0.817	INTRON CG34417
2R	6690287	2R_6690287_SNP [dm3] 2R_10802782_SNP [dm6]	G	T	1.963e^-4	0.817	SYNONYMOUS_CODING wde	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	22648452	3R_22648452_SNP [dm3] 3R_26822730_SNP [dm6]	A	G	1.973e^-4	0.817	INTRON Tl
X	8521366	X_8521366_SNP [dm3] X_8627333_SNP [dm6]	G	T	1.975e^-4	0.817	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	18771229	X_18771229_SNP [dm3] X_18877196_SNP [dm6]	A	C	1.976e^-4	0.817	SYNONYMOUS_CODING CG34401	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	18533393	X_18533393_SNP [dm3] X_18639360_SNP [dm6]	T	G	1.978e^-4	0.817	SYNONYMOUS_CODING Rip11 INTRON Rip11	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11025388	2R_11025388_SNP [dm3] 2R_15137883_SNP [dm6]	A	G	1.981e^-4	0.817	INTRON chn
3L	20539825	3L_20539825_SNP [dm3] 3L_20546725_SNP [dm6]	C	G	1.991e^-4	0.817	INTERGENIC
3R	10280451	3R_10280451_SNP [dm3] 3R_14454729_SNP [dm6]	C	A	1.998e^-4	0.817	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3R	13824475	3R_13824475_SNP [dm3] 3R_17998753_SNP [dm6]	C	T	2.005e^-4	0.817	INTRON cpo
3L	12019060	3L_12019060_SNP [dm3] 3L_12025960_SNP [dm6]	C	T	2.015e^-4	0.817	INTRON rols
3R	16179247	3R_16179247_SNP [dm3] 3R_20353525_SNP [dm6]	A	G	2.018e^-4	0.817	INTERGENIC
3L	5209997	3L_5209997_SNP [dm3] 3L_5216897_SNP [dm6]	A	G	2.022e^-4	0.817	INTRON shep
3R	13847766	3R_13847766_SNP [dm3] 3R_18022044_SNP [dm6]	C	A	2.027e^-4	0.817	DOWNSTREAM DNaseII INTRON CG7785	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3L	6022980	3L_6022980_SNP [dm3] 3L_6029880_SNP [dm6]	A	C	2.033e^-4	0.817	INTERGENIC
2L	18473581	2L_18473581_SNP [dm3] 2L_18473581_SNP [dm6]	C	G	2.045e^-4	0.817	DOWNSTREAM let-7-C INTRON CG10283
3R	13159907	3R_13159907_SNP [dm3] 3R_17334185_SNP [dm6]	T	G	2.046e^-4	0.817	INTRON beat-IIa	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23755798	3R_23755798_SNP [dm3] 3R_27930076_SNP [dm6]	A	G	2.058e^-4	0.817	SYNONYMOUS_CODING mino	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26369428	3R_26369428_SNP [dm3] 3R_30543706_SNP [dm6]	T	C	2.067e^-4	0.817	INTRON tmod
3L	16162207	3L_16162207_SNP [dm3] 3L_16169107_SNP [dm6]	A	T	2.067e^-4	0.817	DOWNSTREAM CG33796 INTERGENIC
3R	19651508	3R_19651508_SNP [dm3] 3R_23825786_SNP [dm6]	C	T	2.097e^-4	0.817	UPSTREAM snRNA:U1:95Cc INTRON CG34355 EXON CR43285	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	1195367	3L_1195367_SNP [dm3] 3L_1195367_SNP [dm6]	A	G	2.101e^-4	0.817	UPSTREAM LysX & 1 other INTERGENIC
X	19227036	X_19227036_SNP [dm3] X_19333003_SNP [dm6]	A	T	2.102e^-4	0.817	INTRON nAChRalpha7
2R	18741646	2R_18741646_INS [dm3] 2R_22854123_INS [dm6]	C	CC	2.107e^-4	0.817	UPSTREAM RpL23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	10814369	3R_10814369_SNP [dm3] 3R_14988647_SNP [dm6]	G	A	2.112e^-4	0.817	INTERGENIC
3R	23943560	3R_23943560_SNP [dm3] 3R_28117838_SNP [dm6]	G	A	2.117e^-4	0.817	INTERGENIC
2R	19047952	2R_19047952_SNP [dm3] 2R_23160429_SNP [dm6]	A	G	2.124e^-4	0.817	SYNONYMOUS_CODING CG9899
2R	9704985	2R_9704985_SNP [dm3] 2R_13817480_SNP [dm6]	A	C	2.126e^-4	0.817	SYNONYMOUS_CODING stj
3R	17088046	3R_17088046_SNP [dm3] 3R_21262324_SNP [dm6]	G	T	2.130e^-4	0.817	SYNONYMOUS_CODING ETHR INTRON ETHR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17088062	3R_17088062_SNP [dm3] 3R_21262340_SNP [dm6]	T	C	2.130e^-4	0.817	SYNONYMOUS_CODING ETHR INTRON ETHR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8898849	3L_8898849_SNP [dm3] 3L_8905749_SNP [dm6]	G	C	2.137e^-4	0.817	UPSTREAM TrpA1 DOWNSTREAM mfr INTERGENIC
2L	16433527	2L_16433527_SNP [dm3] 2L_16433527_SNP [dm6]	C	A	2.138e^-4	0.817	INTRON CG5888
3L	4269221	3L_4269221_SNP [dm3] 3L_4269221_SNP [dm6]	G	T	2.146e^-4	0.817	INTRON CG1273	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	9439602	X_9439602_SNP [dm3] X_9545569_SNP [dm6]	T	C	2.148e^-4	0.817	INTRON CG32700
3R	26589721	3R_26589721_SNP [dm3] 3R_30763999_SNP [dm6]	G	A	2.148e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	13913628	2R_13913628_SNP [dm3] 2R_18026123_SNP [dm6]	C	T	2.154e^-4	0.817	INTERGENIC
X	14881137	X_14881137_SNP [dm3] X_14987104_SNP [dm6]	T	C	2.179e^-4	0.817	INTRON eag	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	13049873	3L_13049873_SNP [dm3] 3L_13056773_SNP [dm6]	G	T	2.196e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17595564	3R_17595564_SNP [dm3] 3R_21769842_SNP [dm6]	C	T	2.196e^-4	0.817	SYNONYMOUS_CODING Burs DOWNSTREAM CG42335 & 1 other
3L	4269170	3L_4269170_SNP [dm3] 3L_4269170_SNP [dm6]	G	T	2.217e^-4	0.817	INTRON CG1273	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	9483931	2R_9483931_SNP [dm3] 2R_13596426_SNP [dm6]	A	G	2.219e^-4	0.817	SYNONYMOUS_CODING CG6197 UPSTREAM S-Lap5
2L	8929988	2L_8929988_SNP [dm3] 2L_8929988_SNP [dm6]	C	A	2.220e^-4	0.817	SYNONYMOUS_CODING CG34398	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4269218	3L_4269218_SNP [dm3] 3L_4269218_SNP [dm6]	T	G	2.228e^-4	0.817	INTRON CG1273	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	24279726	3R_24279726_SNP [dm3] 3R_28454004_SNP [dm6]	T	C	2.228e^-4	0.817	INTRON beat-VI
3R	13372315	3R_13372315_SNP [dm3] 3R_17546593_SNP [dm6]	C	A	2.230e^-4	0.817	UPSTREAM Prx3 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26673144	3R_26673144_DEL [dm3] 3R_30847422_DEL [dm6]	GA	G	2.232e^-4	0.817	INTERGENIC
3L	6022941	3L_6022941_SNP [dm3] 3L_6029841_SNP [dm6]	A	G	2.232e^-4	0.817	INTERGENIC
2L	663591	2L_663591_SNP [dm3] 2L_663591_SNP [dm6]	A	G	2.239e^-4	0.817	INTRON ds
2R	13398531	2R_13398531_SNP [dm3] 2R_17511026_SNP [dm6]	A	G	2.241e^-4	0.817	UTR_3_PRIME CG34193 UPSTREAM CG4847 DOWNSTREAM CG34193
3L	12144981	3L_12144981_SNP [dm3] 3L_12151881_SNP [dm6]	A	G	2.243e^-4	0.817	SYNONYMOUS_CODING Nrx-IV INTRON Nrx-IV	TF binding site BDTNP1_TFBS_bcd
2L	18353669	2L_18353669_SNP [dm3] 2L_18353669_SNP [dm6]	A	G	2.252e^-4	0.817	INTRON Fas3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	6720707	3R_6720707_SNP [dm3] 3R_10894985_SNP [dm6]	G	C	2.258e^-4	0.817	SYNONYMOUS_CODING Leash	TF binding site mE1_TFBS_chinmo
2R	14991747	2R_14991747_SNP [dm3] 2R_19104242_SNP [dm6]	A	T	2.268e^-4	0.817	INTRON 5-HT1A
X	2524371	X_2524371_SNP [dm3] X_2630338_SNP [dm6]	C	T	2.273e^-4	0.817	SYNONYMOUS_CODING PI4KIIIalpha	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2025625	3L_2025625_SNP [dm3] 3L_2025625_SNP [dm6]	G	A	2.275e^-4	0.817	INTERGENIC
3R	9583745	3R_9583745_SNP [dm3] 3R_13758023_SNP [dm6]	C	A	2.288e^-4	0.817	INTRON CG34383
3R	25796198	3R_25796198_SNP [dm3] 3R_29970476_SNP [dm6]	C	A	2.290e^-4	0.817	INTERGENIC
2L	13998984	2L_13998984_SNP [dm3] 2L_13998984_SNP [dm6]	T	C	2.299e^-4	0.817	INTRON rk
2R	11025407	2R_11025407_SNP [dm3] 2R_15137902_SNP [dm6]	G	A	2.300e^-4	0.817	INTRON chn
2L	21952259	2L_21952259_SNP [dm3] 2L_21952259_SNP [dm6]	A	T	2.307e^-4	0.817	INTERGENIC
3L	4270094	3L_4270094_SNP [dm3] 3L_4270094_SNP [dm6]	T	G	2.308e^-4	0.817	INTRON CG1273	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	8659713	2L_8659713_SNP [dm3] 2L_8659713_SNP [dm6]	G	T	2.310e^-4	0.817	INTRON Sema-1a
3R	24033419	3R_24033419_SNP [dm3] 3R_28207697_SNP [dm6]	T	C	2.313e^-4	0.817	INTRON CG34354	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24033448	3R_24033448_SNP [dm3] 3R_28207726_SNP [dm6]	A	C	2.313e^-4	0.817	INTRON CG34354	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24033455	3R_24033455_SNP [dm3] 3R_28207733_SNP [dm6]	A	G	2.313e^-4	0.817	INTRON CG34354	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14317710	3L_14317710_SNP [dm3] 3L_14324610_SNP [dm6]	T	C	2.317e^-4	0.817	INTRON fz & 1 other
2R	19073484	2R_19073484_SNP [dm3] 2R_23185961_SNP [dm6]	A	G	2.318e^-4	0.817	DOWNSTREAM CG13539 INTRON CG34371
3L	14708125	3L_14708125_SNP [dm3] 3L_14715025_SNP [dm6]	T	C	2.319e^-4	0.817	INTRON ome
2R	18979087	2R_18979087_SNP [dm3] 2R_23091564_SNP [dm6]	C	G	2.324e^-4	0.817	INTRON CG9876	TF binding site mE1_TFBS_cad
3R	22622104	3R_22622104_SNP [dm3] 3R_26796382_SNP [dm6]	G	T	2.338e^-4	0.817	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	3433000	2L_3433000_SNP [dm3] 2L_3433000_SNP [dm6]	A	T	2.345e^-4	0.817	INTERGENIC
2L	778199	2L_778199_SNP [dm3] 2L_778199_SNP [dm6]	A	T	2.349e^-4	0.817	UPSTREAM CG13947 INTERGENIC
3L	5997698	3L_5997698_SNP [dm3] 3L_6004598_SNP [dm6]	A	T	2.354e^-4	0.817	INTRON PVRAP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3R	11968545	3R_11968545_SNP [dm3] 3R_16142823_SNP [dm6]	A	G	2.359e^-4	0.817	SYNONYMOUS_CODING Sb
3R	13847767	3R_13847767_DEL [dm3] 3R_18022045_DEL [dm6]	AACAGG	A	2.360e^-4	0.817	DOWNSTREAM DNaseII INTRON CG7785	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3L	6023026	3L_6023026_SNP [dm3] 3L_6029926_SNP [dm6]	A	G	2.361e^-4	0.817	INTERGENIC
2L	19927523	2L_19927523_SNP [dm3] 2L_19927523_SNP [dm6]	C	T	2.365e^-4	0.817	INTRON sick
3R	13519092	3R_13519092_SNP [dm3] 3R_17693370_SNP [dm6]	A	G	2.367e^-4	0.817	SYNONYMOUS_CODING osa	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
3L	8165328	3L_8165328_SNP [dm3] 3L_8172228_SNP [dm6]	A	G	2.368e^-4	0.817	SYNONYMOUS_CODING RecQ4	TF binding site BDTNP1_TFBS_twi
X	21122548	X_21122548_SNP [dm3] X_21251521_SNP [dm6]	C	G	2.370e^-4	0.817	UPSTREAM CG1722 INTRON CG32521
2L	10799596	2L_10799596_SNP [dm3] 2L_10799596_SNP [dm6]	G	A	2.376e^-4	0.817	INTRON CG31869
2R	17890843	2R_17890843_SNP [dm3] 2R_22003338_SNP [dm6]	C	T	2.383e^-4	0.817	INTRON CG34370	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	7256205	X_7256205_DEL [dm3] X_7362172_DEL [dm6]	GG	G	2.392e^-4	0.817	INTRON CG1677 & 1 other
3R	23893381	3R_23893381_SNP [dm3] 3R_28067659_SNP [dm6]	A	G	2.397e^-4	0.817	INTRON CG34362
3L	10698657	3L_10698657_SNP [dm3] 3L_10705557_SNP [dm6]	C	T	2.401e^-4	0.817	INTERGENIC
3L	5597300	3L_5597300_SNP [dm3] 3L_5604200_SNP [dm6]	G	A	2.408e^-4	0.817	UPSTREAM mthl2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_run
2R	6690257	2R_6690257_SNP [dm3] 2R_10802752_SNP [dm6]	G	C	2.415e^-4	0.817	SYNONYMOUS_CODING wde	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	13143760	X_13143760_SNP [dm3] X_13249727_SNP [dm6]	A	C	2.439e^-4	0.817	INTRON mew	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_twi
3R	26589809	3R_26589809_SNP [dm3] 3R_30764087_SNP [dm6]	C	G	2.446e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	14991762	2R_14991762_SNP [dm3] 2R_19104257_SNP [dm6]	C	T	2.452e^-4	0.817	INTRON 5-HT1A
X	11231660	X_11231660_SNP [dm3] X_11337627_SNP [dm6]	G	A	2.453e^-4	0.817	SYNONYMOUS_CODING Kap3
X	19108388	X_19108388_SNP [dm3] X_19214355_SNP [dm6]	C	T	2.464e^-4	0.817	SYNONYMOUS_CODING Mur18B	TF binding site mE1_TFBS_chinmo
2R	12289519	2R_12289519_SNP [dm3] 2R_16402014_SNP [dm6]	G	A	2.486e^-4	0.817	INTRON Sema-2b
3R	25179231	3R_25179231_DEL [dm3] 3R_29353509_DEL [dm6]	TA	T	2.487e^-4	0.817	INTERGENIC
3R	13513471	3R_13513471_SNP [dm3] 3R_17687749_SNP [dm6]	C	A	2.497e^-4	0.817	UPSTREAM CG31249 DOWNSTREAM osa INTERGENIC
3R	16041564	3R_16041564_SNP [dm3] 3R_20215842_SNP [dm6]	G	A	2.502e^-4	0.817	INTRON Nlg4	TF binding site BDTNP1_TFBS_twi
3R	7871934	3R_7871934_SNP [dm3] 3R_12046212_SNP [dm6]	G	A	2.509e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10120065	X_10120065_SNP [dm3] X_10226032_SNP [dm6]	A	G	2.514e^-4	0.817	UPSTREAM CG34408 INTRON CG34408	TF binding site BDTNP1_TFBS_twi
3R	7871965	3R_7871965_SNP [dm3] 3R_12046243_SNP [dm6]	C	T	2.515e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3972332	2L_3972332_SNP [dm3] 2L_3972332_SNP [dm6]	G	C	2.516e^-4	0.817	INTRON fred
3R	12735864	3R_12735864_SNP [dm3] 3R_16910142_SNP [dm6]	C	T	2.519e^-4	0.817	INTRON iab-8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	13513090	3R_13513090_DEL [dm3] 3R_17687368_DEL [dm6]	TGTAAGTTCTT...	T	2.527e^-4	0.817	UPSTREAM CG31249 DOWNSTREAM osa INTERGENIC
2R	9475557	2R_9475557_SNP [dm3] 2R_13588052_SNP [dm6]	C	T	2.530e^-4	0.817	INTRON CG6191 & 1 other
2R	18805650	2R_18805650_SNP [dm3] 2R_22918127_SNP [dm6]	A	G	2.547e^-4	0.817	SYNONYMOUS_CODING CG30187 DOWNSTREAM Nup214	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16406658	2R_16406658_SNP [dm3] 2R_20519153_SNP [dm6]	T	G	2.551e^-4	0.817	INTERGENIC
2R	12216746	2R_12216746_INS [dm3] 2R_16329241_INS [dm6]	G	GTGG	2.566e^-4	0.817	INTRON Vha44
2L	8710919	2L_8710919_SNP [dm3] 2L_8710919_SNP [dm6]	T	C	2.577e^-4	0.817	SYNONYMOUS_CODING raw	TF binding site mE1_TFBS_chinmo
3L	22389134	3L_22389134_SNP [dm3] 3L_22396034_SNP [dm6]	G	T	2.579e^-4	0.817	INTRON Ten-m	TF binding site BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	16379152	3R_16379152_SNP [dm3] 3R_20553430_SNP [dm6]	G	T	2.585e^-4	0.817	INTRON att-ORFA & 1 other	TF binding site mE1_TFBS_cad
3R	13706610	3R_13706610_SNP [dm3] 3R_17880888_SNP [dm6]	T	C	2.590e^-4	0.817	INTRON Rim	TF binding site mE1_TFBS_chinmo
X	6837183	X_6837183_SNP [dm3] X_6943150_SNP [dm6]	T	C	2.615e^-4	0.817	INTRON CG14431
2L	806183	2L_806183_SNP [dm3] 2L_806183_SNP [dm6]	A	G	2.635e^-4	0.817	INTERGENIC
2R	15102639	2R_15102639_SNP [dm3] 2R_19215134_SNP [dm6]	G	A	2.639e^-4	0.817	INTRON hppy
3R	10629241	3R_10629241_SNP [dm3] 3R_14803519_SNP [dm6]	T	C	2.643e^-4	0.817	SYNONYMOUS_CODING CG14857 DOWNSTREAM btsz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	22401230	3L_22401230_SNP [dm3] 3L_22408130_SNP [dm6]	A	T	2.647e^-4	0.817	UPSTREAM Ten-m INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
3L	4270097	3L_4270097_SNP [dm3] 3L_4270097_SNP [dm6]	A	C	2.659e^-4	0.817	INTRON CG1273	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	4296128	2L_4296128_SNP [dm3] 2L_4296128_SNP [dm6]	G	A	2.660e^-4	0.817	INTRON tutl
2L	18473566	2L_18473566_SNP [dm3] 2L_18473566_SNP [dm6]	A	T	2.674e^-4	0.817	DOWNSTREAM let-7-C INTRON CG10283
2L	9897673	2L_9897673_SNP [dm3] 2L_9897673_SNP [dm6]	T	G	2.683e^-4	0.817	UPSTREAM RpS2 DOWNSTREAM Muc30E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18353707	2L_18353707_SNP [dm3] 2L_18353707_SNP [dm6]	C	T	2.684e^-4	0.817	INTRON Fas3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14985127	2R_14985127_SNP [dm3] 2R_19097622_SNP [dm6]	G	T	2.691e^-4	0.817	INTRON 5-HT1A
2R	5271324	2R_5271324_SNP [dm3] 2R_9383819_SNP [dm6]	G	T	2.701e^-4	0.817	INTRON CG13954
3R	15334614	3R_15334614_SNP [dm3] 3R_19508892_SNP [dm6]	G	C	2.711e^-4	0.817	UPSTREAM Dys INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	3663777	2L_3663777_SNP [dm3] 2L_3663777_SNP [dm6]	G	T	2.713e^-4	0.817	INTRON CG34340
X	16566893	X_16566893_SNP [dm3] X_16672860_SNP [dm6]	T	C	2.729e^-4	0.817	INTRON CG13012
2L	495512	2L_495512_SNP [dm3] 2L_495512_SNP [dm6]	G	T	2.732e^-4	0.817	INTRON ush
3L	3724509	3L_3724509_SNP [dm3] 3L_3724509_SNP [dm6]	C	A	2.734e^-4	0.817	INTRON CG32264
3L	18007693	3L_18007693_SNP [dm3] 3L_18014593_SNP [dm6]	G	A	2.738e^-4	0.817	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	10386980	3L_10386980_SNP [dm3] 3L_10393880_SNP [dm6]	G	A	2.744e^-4	0.817	INTERGENIC
X	16696951	X_16696951_SNP [dm3] X_16802918_SNP [dm6]	G	A	2.747e^-4	0.817	NON_SYNONYMOUS_CODING CG9125 UPSTREAM CG13005 DOWNSTREAM CG4789	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	20258769	2R_20258769_SNP [dm3] 2R_24371246_SNP [dm6]	T	C	2.750e^-4	0.817	INTRON bs	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20258821	2R_20258821_SNP [dm3] 2R_24371298_SNP [dm6]	C	A	2.750e^-4	0.817	INTRON bs	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10937667	3R_10937667_SNP [dm3] 3R_15111945_SNP [dm6]	C	G	2.754e^-4	0.817	NON_SYNONYMOUS_CODING CG42788	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	5209800	2R_5209800_SNP [dm3] 2R_9322295_SNP [dm6]	A	G	2.769e^-4	0.817	INTRON CG13954 & 1 other
3R	12379616	3R_12379616_SNP [dm3] 3R_16553894_SNP [dm6]	A	G	2.776e^-4	0.817	INTRON CG42342
2R	13802853	2R_13802853_SNP [dm3] 2R_17915348_SNP [dm6]	A	C	2.776e^-4	0.817	INTRON Elk
2R	15478974	2R_15478974_SNP [dm3] 2R_19591469_SNP [dm6]	C	T	2.780e^-4	0.817	INTRON sm
3R	23933284	3R_23933284_SNP [dm3] 3R_28107562_SNP [dm6]	T	A	2.783e^-4	0.817	INTERGENIC	TF binding site mE1_TFBS_eve
3R	21217337	3R_21217337_SNP [dm3] 3R_25391615_SNP [dm6]	A	T	2.805e^-4	0.817	INTRON Fur1
3R	17892651	3R_17892651_SNP [dm3] 3R_22066929_SNP [dm6]	T	C	2.806e^-4	0.817	INTRON how
X	13714901	X_13714901_SNP [dm3] X_13820868_SNP [dm6]	A	G	2.811e^-4	0.817	INTRON Clic	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	2313542	2L_2313542_SNP [dm3] 2L_2313542_SNP [dm6]	A	T	2.813e^-4	0.817	INTRON CG9967 & 1 other
3L	9921762	3L_9921762_SNP [dm3] 3L_9928662_SNP [dm6]	T	C	2.818e^-4	0.817	INTRON CG34356
3R	22993699	3R_22993699_SNP [dm3] 3R_27167977_SNP [dm6]	G	T	2.825e^-4	0.817	DOWNSTREAM spn-D INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15529791	2L_15529791_SNP [dm3] 2L_15529791_SNP [dm6]	A	T	2.825e^-4	0.817	INTERGENIC
2R	13803182	2R_13803182_SNP [dm3] 2R_17915677_SNP [dm6]	C	T	2.827e^-4	0.817	INTRON Elk
3R	17079075	3R_17079075_SNP [dm3] 3R_21253353_SNP [dm6]	A	G	2.835e^-4	0.817	INTRON ETHR
X	15417066	X_15417066_SNP [dm3] X_15523033_SNP [dm6]	T	A	2.841e^-4	0.817	UPSTREAM Ac13E INTRON Ac13E
X	15417068	X_15417068_SNP [dm3] X_15523035_SNP [dm6]	A	C	2.841e^-4	0.817	UPSTREAM Ac13E INTRON Ac13E
3R	4108029	3R_4108029_SNP [dm3] 3R_8282307_SNP [dm6]	G	T	2.842e^-4	0.817	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	18373465	2L_18373465_SNP [dm3] 2L_18373465_SNP [dm6]	C	A	2.853e^-4	0.817	INTRON Fas3
2R	12669009	2R_12669009_SNP [dm3] 2R_16781504_SNP [dm6]	T	C	2.875e^-4	0.817	SYNONYMOUS_CODING resilin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	10784075	3R_10784075_SNP [dm3] 3R_14958353_SNP [dm6]	G	A	2.879e^-4	0.817	INTERGENIC
3R	21217345	3R_21217345_SNP [dm3] 3R_25391623_SNP [dm6]	C	T	2.884e^-4	0.817	INTRON Fur1
2L	491866	2L_491866_SNP [dm3] 2L_491866_SNP [dm6]	C	A	2.886e^-4	0.817	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	22623248	3R_22623248_SNP [dm3] 3R_26797526_SNP [dm6]	G	A	2.888e^-4	0.817	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	11019261	2R_11019261_SNP [dm3] 2R_15131756_SNP [dm6]	G	T	2.898e^-4	0.817	INTRON chn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	4583403	2L_4583403_SNP [dm3] 2L_4583403_SNP [dm6]	G	A	2.900e^-4	0.817	UPSTREAM CR43716 INTRON dp
3L	4270111	3L_4270111_SNP [dm3] 3L_4270111_SNP [dm6]	A	T	2.914e^-4	0.817	INTRON CG1273	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	9230712	3L_9230712_SNP [dm3] 3L_9237612_SNP [dm6]	T	A	2.921e^-4	0.817	UPSTREAM CG4483 INTERGENIC
2L	4467253	2L_4467253_SNP [dm3] 2L_4467253_SNP [dm6]	C	T	2.926e^-4	0.817	SYNONYMOUS_CODING CG17840 DOWNSTREAM ine	TF binding site mE1_TFBS_cad
2R	7487661	2R_7487661_SNP [dm3] 2R_11600156_SNP [dm6]	G	C	2.929e^-4	0.817	INTRON tou	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9230707	3L_9230707_SNP [dm3] 3L_9237607_SNP [dm6]	G	A	2.943e^-4	0.817	UPSTREAM CG4483 INTERGENIC
2L	716729	2L_716729_SNP [dm3] 2L_716729_SNP [dm6]	C	G	2.948e^-4	0.817	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	716733	2L_716733_SNP [dm3] 2L_716733_SNP [dm6]	G	T	2.948e^-4	0.817	INTERGENIC	TF binding site mE1_TFBS_Trl
X	18533480	X_18533480_SNP [dm3] X_18639447_SNP [dm6]	C	T	2.949e^-4	0.817	SYNONYMOUS_CODING Rip11 INTRON Rip11	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3596400	2L_3596400_SNP [dm3] 2L_3596400_SNP [dm6]	C	T	2.957e^-4	0.817	INTERGENIC
2L	13911400	2L_13911400_SNP [dm3] 2L_13911400_SNP [dm6]	T	C	2.958e^-4	0.817	SYNONYMOUS_CODING Ance-2 UPSTREAM Acyp
3L	1195296	3L_1195296_SNP [dm3] 3L_1195296_SNP [dm6]	G	C	2.958e^-4	0.817	UTR_5_PRIME LysX
2L	2260501	2L_2260501_SNP [dm3] 2L_2260501_SNP [dm6]	A	G	2.969e^-4	0.817	UPSTREAM CR44788 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	13513043	3R_13513043_SNP [dm3] 3R_17687321_SNP [dm6]	T	C	2.970e^-4	0.817	UPSTREAM CG31249 DOWNSTREAM osa INTERGENIC
3R	23930006	3R_23930006_SNP [dm3] 3R_28104284_SNP [dm6]	T	C	2.979e^-4	0.817	INTERGENIC
X	8757708	X_8757708_SNP [dm3] X_8863675_SNP [dm6]	A	T	2.979e^-4	0.817	UPSTREAM CG12075 INTRON CG12075	TF binding site BDTNP1_TFBS_dl
2L	9456783	2L_9456783_SNP [dm3] 2L_9456783_SNP [dm6]	C	G	2.988e^-4	0.817	INTRON numb	regulatory region REDfly_CRMs
3L	6941295	3L_6941295_SNP [dm3] 3L_6948195_SNP [dm6]	T	C	2.989e^-4	0.817	INTRON tow
3R	23099674	3R_23099674_INS [dm3] 3R_27273952_INS [dm6]	C	CC	2.991e^-4	0.817	UPSTREAM l_3_mbt & 1 other INTRON CG5934	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
2L	8858319	2L_8858319_SNP [dm3] 2L_8858319_SNP [dm6]	G	A	2.993e^-4	0.817	INTERGENIC
2R	14991756	2R_14991756_SNP [dm3] 2R_19104251_SNP [dm6]	T	C	3.001e^-4	0.817	INTRON 5-HT1A
3L	6022931	3L_6022931_SNP [dm3] 3L_6029831_SNP [dm6]	G	A	3.002e^-4	0.817	INTERGENIC
2L	9504301	2L_9504301_SNP [dm3] 2L_9504301_SNP [dm6]	G	A	3.014e^-4	0.817	SYNONYMOUS_CODING CG33298	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17952221	3R_17952221_SNP [dm3] 3R_22126499_SNP [dm6]	A	C	3.014e^-4	0.817	INTRON CG42390	TF binding site mE1_TFBS_cad
3L	5460661	3L_5460661_SNP [dm3] 3L_5467561_SNP [dm6]	T	C	3.029e^-4	0.817	INTERGENIC
3L	1960843	3L_1960843_SNP [dm3] 3L_1960843_SNP [dm6]	C	A	3.056e^-4	0.817	NON_SYNONYMOUS_CODING mv
3R	16261615	3R_16261615_SNP [dm3] 3R_20435893_SNP [dm6]	A	C	3.061e^-4	0.817	INTRON Gfrl	TF binding site mE1_TFBS_inv
3L	20556582	3L_20556582_SNP [dm3] 3L_20563482_SNP [dm6]	T	A	3.067e^-4	0.817	INTERGENIC
3R	23922250	3R_23922250_SNP [dm3] 3R_28096528_SNP [dm6]	T	A	3.070e^-4	0.817	INTERGENIC
X	21119540	X_21119540_SNP [dm3] X_21248513_SNP [dm6]	C	T	3.075e^-4	0.817	INTRON CG32521
2R	8982303	2R_8982303_SNP [dm3] 2R_13094798_SNP [dm6]	A	C	3.084e^-4	0.817	INTERGENIC
3R	10350681	3R_10350681_SNP [dm3] 3R_14524959_SNP [dm6]	T	A	3.085e^-4	0.817	INTRON Pde6
2L	7533737	2L_7533737_SNP [dm3] 2L_7533737_SNP [dm6]	T	C	3.087e^-4	0.817	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	18377398	2L_18377398_SNP [dm3] 2L_18377398_SNP [dm6]	G	A	3.095e^-4	0.817	INTRON Fas3
X	5301898	X_5301898_SNP [dm3] X_5407865_SNP [dm6]	T	A	3.121e^-4	0.817	SYNONYMOUS_CODING NAAT1	TF binding site BDTNP1_TFBS_twi
3R	13513074	3R_13513074_SNP [dm3] 3R_17687352_SNP [dm6]	G	A	3.135e^-4	0.817	UPSTREAM CG31249 DOWNSTREAM osa INTERGENIC
2L	491364	2L_491364_SNP [dm3] 2L_491364_SNP [dm6]	C	T	3.139e^-4	0.817	SPLICE_SITE_REGION ush INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
2R	5903474	2R_5903474_SNP [dm3] 2R_10015969_SNP [dm6]	G	A	3.140e^-4	0.817	INTRON Pka-R2
3R	9736544	3R_9736544_SNP [dm3] 3R_13910822_SNP [dm6]	G	A	3.143e^-4	0.817	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23926870	3R_23926870_SNP [dm3] 3R_28101148_SNP [dm6]	G	A	3.147e^-4	0.817	INTERGENIC
2R	6690177	2R_6690177_SNP [dm3] 2R_10802672_SNP [dm6]	C	G	3.148e^-4	0.817	NON_SYNONYMOUS_CODING wde	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5462257	2L_5462257_SNP [dm3] 2L_5462257_SNP [dm6]	T	G	3.150e^-4	0.817	INTRON mid	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	7143215	3L_7143215_SNP [dm3] 3L_7150115_SNP [dm6]	A	G	3.153e^-4	0.817	INTRON corn	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	1156286	2L_1156286_SNP [dm3] 2L_1156286_SNP [dm6]	G	A	3.154e^-4	0.817	START_GAINED capt UTR_5_PRIME capt INTRON capt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	25796201	3R_25796201_SNP [dm3] 3R_29970479_SNP [dm6]	A	G	3.154e^-4	0.817	INTERGENIC
X	4334831	X_4334831_SNP [dm3] X_4440798_SNP [dm6]	T	A	3.170e^-4	0.817	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
3R	5962918	3R_5962918_SNP [dm3] 3R_10137196_SNP [dm6]	C	T	3.173e^-4	0.817	INTRON tws
2L	3596467	2L_3596467_SNP [dm3] 2L_3596467_SNP [dm6]	G	C	3.176e^-4	0.817	INTERGENIC
2L	3601651	2L_3601651_SNP [dm3] 2L_3601651_SNP [dm6]	T	A	3.176e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1
2R	1664259	2R_1664259_SNP [dm3] 2R_5776754_SNP [dm6]	T	G	3.201e^-4	0.817	INTRON ZnT41F
3L	11334904	3L_11334904_SNP [dm3] 3L_11341804_SNP [dm6]	T	G	3.203e^-4	0.817	UPSTREAM CR45250 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	18047392	X_18047392_DEL [dm3] X_18153359_DEL [dm6]	CCAGCAACTAGC...	C	3.211e^-4	0.817	INTERGENIC
3L	14323886	3L_14323886_SNP [dm3] 3L_14330786_SNP [dm6]	C	G	3.217e^-4	0.817	DOWNSTREAM CG13482 INTRON fz	TF binding site BDTNP1_TFBS_twi
3R	13512898	3R_13512898_SNP [dm3] 3R_17687176_SNP [dm6]	A	G	3.218e^-4	0.817	UPSTREAM CG31249 DOWNSTREAM osa INTERGENIC
3R	13512995	3R_13512995_DEL [dm3] 3R_17687273_DEL [dm6]	TAATACAATTT...	T	3.218e^-4	0.817	UPSTREAM CG31249 DOWNSTREAM osa INTERGENIC
3R	24165014	3R_24165014_SNP [dm3] 3R_28339292_SNP [dm6]	G	A	3.225e^-4	0.817	SYNONYMOUS_CODING Gfat2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7252722	2L_7252722_SNP [dm3] 2L_7252722_SNP [dm6]	T	A	3.227e^-4	0.817	SYNONYMOUS_CODING CG13786
3L	14373995	3L_14373995_SNP [dm3] 3L_14380895_SNP [dm6]	C	T	3.235e^-4	0.817	INTERGENIC
X	16696841	X_16696841_SNP [dm3] X_16802808_SNP [dm6]	G	A	3.235e^-4	0.817	SYNONYMOUS_CODING CG9125 UPSTREAM CG13005 DOWNSTREAM CG4789	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	14086535	3R_14086535_SNP [dm3] 3R_18260813_SNP [dm6]	T	A	3.237e^-4	0.817	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	13797991	2R_13797991_SNP [dm3] 2R_17910486_SNP [dm6]	T	G	3.242e^-4	0.817	INTRON Elk
3L	1195645	3L_1195645_SNP [dm3] 3L_1195645_SNP [dm6]	T	A	3.246e^-4	0.817	UPSTREAM LysX & 1 other INTERGENIC
3R	15333727	3R_15333727_SNP [dm3] 3R_19508005_SNP [dm6]	G	A	3.253e^-4	0.817	INTRON Dys
2L	5537595	2L_5537595_SNP [dm3] 2L_5537595_SNP [dm6]	G	A	3.255e^-4	0.817	SYNONYMOUS_CODING CG14015 UPSTREAM tomb	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	16796198	2L_16796198_SNP [dm3] 2L_16796198_SNP [dm6]	A	G	3.258e^-4	0.817	UPSTREAM Ugt36Bb DOWNSTREAM Ugt36Ba INTERGENIC
2L	1722525	2L_1722525_SNP [dm3] 2L_1722525_SNP [dm6]	T	A	3.259e^-4	0.817	INTRON Rim2
3R	25523048	3R_25523048_SNP [dm3] 3R_29697326_SNP [dm6]	G	A	3.261e^-4	0.817	DOWNSTREAM dmrt99B INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6940893	3L_6940893_SNP [dm3] 3L_6947793_SNP [dm6]	T	C	3.271e^-4	0.817	SYNONYMOUS_CODING tow
3R	13686266	3R_13686266_SNP [dm3] 3R_17860544_SNP [dm6]	C	T	3.272e^-4	0.817	INTRON tinc
3R	10429607	3R_10429607_SNP [dm3] 3R_14603885_SNP [dm6]	T	C	3.273e^-4	0.817	INTRON stumps
3R	12728815	3R_12728815_SNP [dm3] 3R_16903093_SNP [dm6]	T	C	3.283e^-4	0.817	INTRON iab-8
3R	9614289	3R_9614289_SNP [dm3] 3R_13788567_SNP [dm6]	A	G	3.293e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15091284	3R_15091284_SNP [dm3] 3R_19265562_SNP [dm6]	T	G	3.298e^-4	0.817	INTERGENIC
3L	15949343	3L_15949343_INS [dm3] 3L_15956243_INS [dm6]	T	TG	3.301e^-4	0.817	UTR_3_PRIME GXIVsPLA2 UPSTREAM elgi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3R	23057026	3R_23057026_INS [dm3] 3R_27231304_INS [dm6]	G	GC	3.305e^-4	0.817	UTR_3_PRIME CG31064 INTRON CG31064
3R	23057029	3R_23057029_DEL [dm3] 3R_27231307_DEL [dm6]	TTTGAG	C	3.305e^-4	0.817	UTR_3_PRIME CG31064 INTRON CG31064
3R	9583823	3R_9583823_INS [dm3] 3R_13758101_INS [dm6]	A	AAA	3.307e^-4	0.817	INTRON CG34383
3R	23984071	3R_23984071_SNP [dm3] 3R_28158349_SNP [dm6]	C	T	3.308e^-4	0.817	INTRON CG34354	TF binding site mE1_TFBS_inv
2L	16399283	2L_16399283_SNP [dm3] 2L_16399283_SNP [dm6]	C	G	3.310e^-4	0.817	DOWNSTREAM CG5888 INTERGENIC
3L	12344530	3L_12344530_SNP [dm3] 3L_12351430_SNP [dm6]	C	G	3.310e^-4	0.817	UTR_5_PRIME CrzR
3L	5898096	3L_5898096_SNP [dm3] 3L_5904996_SNP [dm6]	G	A	3.315e^-4	0.817	SYNONYMOUS_CODING CG10486 UTR_3_PRIME CG10486 UPSTREAM CG32413
3L	22407021	3L_22407021_SNP [dm3] 3L_22413921_SNP [dm6]	T	C	3.315e^-4	0.817	INTERGENIC
3R	23748948	3R_23748948_SNP [dm3] 3R_27923226_SNP [dm6]	T	C	3.317e^-4	0.817	SYNONYMOUS_CODING RpL4 UPSTREAM BCAS2 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	12526594	2R_12526594_SNP [dm3] 2R_16639089_SNP [dm6]	G	A	3.319e^-4	0.817	INTRON Alk
2R	12478089	2R_12478089_SNP [dm3] 2R_16590584_SNP [dm6]	G	A	3.330e^-4	0.817	SYNONYMOUS_CODING CG8306	TF binding site mE1_TFBS_sens
2L	5463251	2L_5463251_SNP [dm3] 2L_5463251_SNP [dm6]	G	A	3.331e^-4	0.817	INTRON mid
3R	18476520	3R_18476520_SNP [dm3] 3R_22650798_SNP [dm6]	C	T	3.344e^-4	0.817	INTRON CG45058
3L	6498130	3L_6498130_MNP [dm3] 3L_6505030_MNP [dm6]	AAC	TTT	3.344e^-4	0.817	INTRON sfl	TF binding site BDTNP1_TFBS_dl
3R	24129633	3R_24129633_SNP [dm3] 3R_28303911_SNP [dm6]	T	C	3.347e^-4	0.817	SYNONYMOUS_CODING CG12516
2R	5106627	2R_5106627_SNP [dm3] 2R_9219122_SNP [dm6]	C	A	3.348e^-4	0.817	INTERGENIC
2R	18726875	2R_18726875_SNP [dm3] 2R_22839352_SNP [dm6]	T	G	3.356e^-4	0.817	DOWNSTREAM CG9825 INTERGENIC
2L	5587927	2L_5587927_SNP [dm3] 2L_5587927_SNP [dm6]	G	T	3.365e^-4	0.817	INTRON CG7251
3L	22399981	3L_22399981_SNP [dm3] 3L_22406881_SNP [dm6]	T	C	3.368e^-4	0.817	INTRON Ten-m	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	6334530	X_6334530_SNP [dm3] X_6440497_SNP [dm6]	A	T	3.369e^-4	0.817	INTRON CG42340
3L	4205627	3L_4205627_SNP [dm3] 3L_4205627_SNP [dm6]	C	G	3.382e^-4	0.817	INTRON CG43367
2L	4653793	2L_4653793_SNP [dm3] 2L_4653793_SNP [dm6]	G	A	3.382e^-4	0.817	DOWNSTREAM CG3355 INTERGENIC
3L	18863241	3L_18863241_SNP [dm3] 3L_18870141_SNP [dm6]	T	G	3.383e^-4	0.817	UTR_3_PRIME Rad9 UPSTREAM Blos3 DOWNSTREAM Dysb & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_ttk
2R	12512083	2R_12512083_SNP [dm3] 2R_16624578_SNP [dm6]	A	C	3.386e^-4	0.817	UTR_3_PRIME CG5065 DOWNSTREAM CG5065 & 1 other
3L	2106890	3L_2106890_SNP [dm3] 3L_2106890_SNP [dm6]	A	G	3.389e^-4	0.817	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_HSA
2L	995373	2L_995373_SNP [dm3] 2L_995373_SNP [dm6]	G	A	3.393e^-4	0.817	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	12007498	3L_12007498_SNP [dm3] 3L_12014398_SNP [dm6]	A	T	3.408e^-4	0.817	INTRON rols
3R	16721244	3R_16721244_SNP [dm3] 3R_20895522_SNP [dm6]	C	G	3.418e^-4	0.817	UTR_3_PRIME CG10830
3R	15333931	3R_15333931_INS [dm3] 3R_19508209_INS [dm6]	A	ACAATTA	3.421e^-4	0.817	INTRON Dys
3R	13527435	3R_13527435_SNP [dm3] 3R_17701713_SNP [dm6]	C	G	3.427e^-4	0.817	INTRON osa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA
2L	8834957	2L_8834957_SNP [dm3] 2L_8834957_SNP [dm6]	A	T	3.427e^-4	0.817	INTERGENIC
3L	14690343	3L_14690343_DEL [dm3] 3L_14697243_DEL [dm6]	TTGGCT	A	3.428e^-4	0.817	UPSTREAM CG13474 DOWNSTREAM CG17177 INTRON ome
3R	9759621	3R_9759621_INS [dm3] 3R_13933899_INS [dm6]	C	CC	3.429e^-4	0.817	INTERGENIC
3L	6823393	3L_6823393_DEL [dm3] 3L_6830293_DEL [dm6]	TT	T	3.439e^-4	0.817	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA
3R	19095277	3R_19095277_SNP [dm3] 3R_23269555_SNP [dm6]	G	A	3.450e^-4	0.817	NON_SYNONYMOUS_CODING orb UTR_5_PRIME orb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2002607	3L_2002607_DEL [dm3] 3L_2002607_DEL [dm6]	CTAC	C	3.459e^-4	0.817	DOWNSTREAM CG42841 INTERGENIC
3L	14270962	3L_14270962_SNP [dm3] 3L_14277862_SNP [dm6]	C	T	3.471e^-4	0.817	INTRON fz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	2909937	X_2909937_SNP [dm3] X_3015904_SNP [dm6]	A	C	3.471e^-4	0.817	INTRON kirre	TF binding site BDTNP1_TFBS_da
2R	10110737	2R_10110737_SNP [dm3] 2R_14223232_SNP [dm6]	G	A	3.473e^-4	0.817	INTRON CG8468	TF binding site mE1_TFBS_sens
2L	833363	2L_833363_SNP [dm3] 2L_833363_SNP [dm6]	C	T	3.484e^-4	0.817	DOWNSTREAM drongo & 1 other INTERGENIC
2L	3481521	2L_3481521_SNP [dm3] 2L_3481521_SNP [dm6]	T	G	3.490e^-4	0.817	SYNONYMOUS_CODING CG15414	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	17220816	X_17220816_SNP [dm3] X_17326783_SNP [dm6]	T	A	3.491e^-4	0.817	INTERGENIC
3R	15333751	3R_15333751_SNP [dm3] 3R_19508029_SNP [dm6]	A	G	3.508e^-4	0.817	INTRON Dys
3R	26523656	3R_26523656_SNP [dm3] 3R_30697934_SNP [dm6]	C	T	3.511e^-4	0.817	UPSTREAM Pka-C2 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19839758	3L_19839758_DEL [dm3] 3L_19846658_DEL [dm6]	TCTATTAGGGAAATACTTAA...	T	3.512e^-4	0.817	UPSTREAM Papss INTRON Papss
2L	10053341	2L_10053341_SNP [dm3] 2L_10053341_SNP [dm6]	T	A	3.514e^-4	0.817	UPSTREAM CR44875 & 1 other INTERGENIC
2L	8732750	2L_8732750_SNP [dm3] 2L_8732750_SNP [dm6]	T	C	3.517e^-4	0.817	INTRON raw
2R	8203516	2R_8203516_SNP [dm3] 2R_12316011_SNP [dm6]	G	A	3.536e^-4	0.817	SYNONYMOUS_CODING CG30046	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	14477980	2R_14477980_SNP [dm3] 2R_18590475_SNP [dm6]	C	A	3.542e^-4	0.817	INTRON GEFmeso
3L	16239755	3L_16239755_SNP [dm3] 3L_16246655_SNP [dm6]	G	A	3.545e^-4	0.817	INTERGENIC
3R	10117264	3R_10117264_SNP [dm3] 3R_14291542_SNP [dm6]	A	C	3.555e^-4	0.817	INTRON CG12207
2R	11760017	2R_11760017_SNP [dm3] 2R_15872512_SNP [dm6]	A	G	3.555e^-4	0.817	SYNONYMOUS_CODING sli UTR_3_PRIME sli	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15678022	3L_15678022_SNP [dm3] 3L_15684922_SNP [dm6]	C	T	3.570e^-4	0.817	NON_SYNONYMOUS_CODING pgant8
3R	13513346	3R_13513346_SNP [dm3] 3R_17687624_SNP [dm6]	A	G	3.575e^-4	0.817	UPSTREAM CG31249 DOWNSTREAM osa INTERGENIC
2L	18881488	2L_18881488_SNP [dm3] 2L_18881488_SNP [dm6]	G	A	3.584e^-4	0.817	UPSTREAM tup INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	4062017	3R_4062017_SNP [dm3] 3R_8236295_SNP [dm6]	A	C	3.588e^-4	0.817	NON_SYNONYMOUS_CODING DNApol-iota DOWNSTREAM Ada2b
2L	17431984	2L_17431984_SNP [dm3] 2L_17431984_SNP [dm6]	C	T	3.588e^-4	0.817	INTRON Dif
3L	12237632	3L_12237632_SNP [dm3] 3L_12244532_SNP [dm6]	C	G	3.602e^-4	0.817	DOWNSTREAM CR43991 INTRON app
3L	6577949	3L_6577949_SNP [dm3] 3L_6584849_SNP [dm6]	C	G	3.610e^-4	0.817	INTRON CG18769 & 1 other	TF binding site mE1_TFBS_inv
2L	8671152	2L_8671152_SNP [dm3] 2L_8671152_SNP [dm6]	C	A	3.610e^-4	0.817	UTR_3_PRIME Sema-1a
3R	13512776	3R_13512776_SNP [dm3] 3R_17687054_SNP [dm6]	A	G	3.613e^-4	0.817	START_GAINED CG31249 UTR_5_PRIME CG31249 DOWNSTREAM osa
3L	1515016	3L_1515016_INS [dm3] 3L_1515016_INS [dm6]	A	AA	3.615e^-4	0.817	INTRON Psa & 1 other	TF binding site BDTNP1_TFBS_da
3L	3046955	3L_3046955_SNP [dm3] 3L_3046955_SNP [dm6]	T	A	3.623e^-4	0.817	UPSTREAM Sk2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	20258753	2R_20258753_SNP [dm3] 2R_24371230_SNP [dm6]	C	T	3.623e^-4	0.817	INTRON bs	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13803199	2R_13803199_SNP [dm3] 2R_17915694_SNP [dm6]	T	C	3.624e^-4	0.817	INTRON Elk
X	8856215	X_8856215_SNP [dm3] X_8962182_SNP [dm6]	T	A	3.635e^-4	0.817	INTRON rdgA
3R	13512979	3R_13512979_SNP [dm3] 3R_17687257_SNP [dm6]	T	A	3.637e^-4	0.817	UPSTREAM CG31249 DOWNSTREAM osa INTERGENIC
2R	8445408	2R_8445408_SNP [dm3] 2R_12557903_SNP [dm6]	C	A	3.640e^-4	0.817	INTRON fra	TF binding site mE1_TFBS_cad
3L	601120	3L_601120_SNP [dm3] 3L_601120_SNP [dm6]	A	G	3.645e^-4	0.817	INTRON CG13893
2L	2795568	2L_2795568_SNP [dm3] 2L_2795568_SNP [dm6]	T	C	3.650e^-4	0.817	UPSTREAM Syt1 INTRON Syt1
3L	5303091	3L_5303091_SNP [dm3] 3L_5309991_SNP [dm6]	G	T	3.656e^-4	0.817	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	21119383	X_21119383_INS [dm3] X_21248356_INS [dm6]	C	CTC	3.657e^-4	0.817	INTRON CG32521
3L	18579737	3L_18579737_SNP [dm3] 3L_18586637_SNP [dm6]	T	C	3.664e^-4	0.817	INTERGENIC
3R	19210394	3R_19210394_SNP [dm3] 3R_23384672_SNP [dm6]	T	C	3.670e^-4	0.817	UTR_5_PRIME CG4393	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
3R	16190338	3R_16190338_SNP [dm3] 3R_20364616_SNP [dm6]	A	G	3.671e^-4	0.817	INTERGENIC
X	12584523	X_12584523_SNP [dm3] X_12690490_SNP [dm6]	C	T	3.672e^-4	0.817	SYNONYMOUS_CODING Smr	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15335136	3R_15335136_SNP [dm3] 3R_19509414_SNP [dm6]	A	T	3.682e^-4	0.817	INTRON Dys	TF binding site BDTNP1_TFBS_dl
2R	4627639	2R_4627639_SNP [dm3] 2R_8740134_SNP [dm6]	C	A	3.683e^-4	0.817	INTRON CG8740	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	4627640	2R_4627640_SNP [dm3] 2R_8740135_SNP [dm6]	C	T	3.683e^-4	0.817	INTRON CG8740	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	7005676	2R_7005676_SNP [dm3] 2R_11118171_SNP [dm6]	T	C	3.685e^-4	0.817	UTR_3_PRIME Cyp12d1-p
3R	22581837	3R_22581837_SNP [dm3] 3R_26756115_SNP [dm6]	A	C	3.705e^-4	0.817	DOWNSTREAM CR45562 INTERGENIC
2L	7443409	2L_7443409_INS [dm3] 2L_7443409_INS [dm6]	T	TAT	3.711e^-4	0.817	UPSTREAM CG5973 INTRON CG5973
3R	12343378	3R_12343378_SNP [dm3] 3R_16517656_SNP [dm6]	C	T	3.711e^-4	0.817	INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12343390	3R_12343390_SNP [dm3] 3R_16517668_SNP [dm6]	A	C	3.711e^-4	0.817	INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9921660	3L_9921660_SNP [dm3] 3L_9928560_SNP [dm6]	A	T	3.722e^-4	0.817	INTRON CG34356
2R	7045732	2R_7045732_SNP [dm3] 2R_11158227_SNP [dm6]	T	C	3.725e^-4	0.817	UPSTREAM shn INTRON CG13229
3R	6044102	3R_6044102_SNP [dm3] 3R_10218380_SNP [dm6]	T	C	3.729e^-4	0.817	NON_SYNONYMOUS_CODING Syn UTR_3_PRIME Syn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9879971	2L_9879971_SNP [dm3] 2L_9879971_SNP [dm6]	C	G	3.731e^-4	0.817	INTRON nAChRalpha6	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	7127115	2R_7127115_SNP [dm3] 2R_11239610_SNP [dm6]	T	A	3.733e^-4	0.817	UTR_3_PRIME CG13215 UPSTREAM CG13216	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	4338724	X_4338724_SNP [dm3] X_4444691_SNP [dm6]	A	T	3.735e^-4	0.817	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
3R	20513998	3R_20513998_SNP [dm3] 3R_24688276_SNP [dm6]	C	A	3.736e^-4	0.817	INTRON slo
3L	8855865	3L_8855865_SNP [dm3] 3L_8862765_SNP [dm6]	G	T	3.739e^-4	0.817	INTRON dally	TF binding site BDTNP1_TFBS_prd
2L	1021309	2L_1021309_SNP [dm3] 2L_1021309_SNP [dm6]	C	G	3.741e^-4	0.817	INTRON IA-2
2L	955148	2L_955148_SNP [dm3] 2L_955148_SNP [dm6]	C	G	3.741e^-4	0.817	INTRON CG4341
2L	2373333	2L_2373333_SNP [dm3] 2L_2373333_SNP [dm6]	A	G	3.742e^-4	0.817	SYNONYMOUS_CODING CG3609	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10645882	2L_10645882_SNP [dm3] 2L_10645882_SNP [dm6]	A	C	3.749e^-4	0.817	UTR_3_PRIME CG18284 UPSTREAM CG17097 DOWNSTREAM CG18284
3L	18117730	3L_18117730_SNP [dm3] 3L_18124630_SNP [dm6]	T	C	3.756e^-4	0.817	INTERGENIC
3L	1976257	3L_1976257_SNP [dm3] 3L_1976257_SNP [dm6]	G	T	3.759e^-4	0.817	INTERGENIC
2L	5815159	2L_5815159_SNP [dm3] 2L_5815159_SNP [dm6]	C	T	3.764e^-4	0.817	INTERGENIC	TF binding site mE1_TFBS_inv
2L	5815245	2L_5815245_SNP [dm3] 2L_5815245_SNP [dm6]	G	A	3.764e^-4	0.817	INTERGENIC
2L	5815303	2L_5815303_SNP [dm3] 2L_5815303_SNP [dm6]	A	G	3.764e^-4	0.817	INTERGENIC
2R	15473236	2R_15473236_SNP [dm3] 2R_19585731_SNP [dm6]	C	T	3.769e^-4	0.817	INTRON sm
2L	958456	2L_958456_SNP [dm3] 2L_958456_SNP [dm6]	A	G	3.771e^-4	0.817	DOWNSTREAM CG4341 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	17870989	2R_17870989_SNP [dm3] 2R_21983484_SNP [dm6]	G	A	3.774e^-4	0.817	INTERGENIC
2R	9965769	2R_9965769_SNP [dm3] 2R_14078264_SNP [dm6]	C	A	3.775e^-4	0.817	INTRON Prosap
2L	17396199	2L_17396199_INS [dm3] 2L_17396199_INS [dm6]	T	AA	3.790e^-4	0.817	INTRON CLIP-190
2L	1125632	2L_1125632_SNP [dm3] 2L_1125632_SNP [dm6]	A	T	3.794e^-4	0.817	INTRON Pino
3R	11233216	3R_11233216_SNP [dm3] 3R_15407494_SNP [dm6]	A	G	3.803e^-4	0.817	UPSTREAM CG6125 & 1 other INTERGENIC
3L	899175	3L_899175_SNP [dm3] 3L_899175_SNP [dm6]	C	T	3.805e^-4	0.817	DOWNSTREAM CG34057 INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	6022995	3L_6022995_SNP [dm3] 3L_6029895_SNP [dm6]	A	C	3.807e^-4	0.817	INTERGENIC
3L	21749448	3L_21749448_SNP [dm3] 3L_21756348_SNP [dm6]	G	T	3.809e^-4	0.817	UPSTREAM CG14564 INTRON Syn1	TF binding site mE1_TFBS_chinmo
X	18382063	X_18382063_SNP [dm3] X_18488030_SNP [dm6]	G	T	3.814e^-4	0.817	INTRON CG15046	TF binding site mE1_TFBS_chinmo
3L	22383453	3L_22383453_SNP [dm3] 3L_22390353_SNP [dm6]	C	A	3.829e^-4	0.817	INTRON Ten-m
2R	6131228	2R_6131228_SNP [dm3] 2R_10243723_SNP [dm6]	C	T	3.836e^-4	0.817	SYNONYMOUS_CODING Hdc	TF binding site mE1_TFBS_cad
2L	3630316	2L_3630316_SNP [dm3] 2L_3630316_SNP [dm6]	G	T	3.840e^-4	0.817	INTRON for
2L	3636984	2L_3636984_SNP [dm3] 2L_3636984_SNP [dm6]	C	A	3.840e^-4	0.817	DOWNSTREAM mir-4972 INTRON for EXON mir-4972
2L	10433554	2L_10433554_SNP [dm3] 2L_10433554_SNP [dm6]	G	A	3.858e^-4	0.817	SYNONYMOUS_CODING CG5337 DOWNSTREAM TfIIB	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	14189578	2L_14189578_SNP [dm3] 2L_14189578_SNP [dm6]	C	T	3.872e^-4	0.817	INTRON Dyrk2
2R	7048479	2R_7048479_SNP [dm3] 2R_11160974_SNP [dm6]	G	A	3.875e^-4	0.817	INTRON shn & 1 other	TF binding site mE1_TFBS_inv
2L	17431975	2L_17431975_SNP [dm3] 2L_17431975_SNP [dm6]	T	A	3.876e^-4	0.817	INTRON Dif
3R	6730500	3R_6730500_SNP [dm3] 3R_10904778_SNP [dm6]	A	T	3.878e^-4	0.817	INTERGENIC
3L	12732961	3L_12732961_SNP [dm3] 3L_12739861_SNP [dm6]	G	A	3.880e^-4	0.817	NON_SYNONYMOUS_CODING Ptp69D	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15962756	3R_15962756_SNP [dm3] 3R_20137034_SNP [dm6]	C	T	3.882e^-4	0.817	INTERGENIC
X	14881139	X_14881139_SNP [dm3] X_14987106_SNP [dm6]	C	A	3.882e^-4	0.817	INTRON eag	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	9782643	3R_9782643_DEL [dm3] 3R_13956921_DEL [dm6]	GG	G	3.896e^-4	0.817	INTERGENIC
3L	894504	3L_894504_INS [dm3] 3L_894504_INS [dm6]	C	CTTTTCGTAAAAAT...	3.900e^-4	0.817	UTR_3_PRIME CG32479 DOWNSTREAM CG32479
3L	15064653	3L_15064653_SNP [dm3] 3L_15071553_SNP [dm6]	A	G	3.905e^-4	0.817	INTRON cp309
2L	7253166	2L_7253166_SNP [dm3] 2L_7253166_SNP [dm6]	G	A	3.914e^-4	0.817	UPSTREAM CG13786 INTERGENIC
3L	17977520	3L_17977520_SNP [dm3] 3L_17984420_SNP [dm6]	G	A	3.916e^-4	0.817	INTRON Eip75B
3R	5965708	3R_5965708_SNP [dm3] 3R_10139986_SNP [dm6]	A	T	3.925e^-4	0.817	UPSTREAM tws DOWNSTREAM TAF1B INTERGENIC	TF binding site mE1_TFBS_Trl
2L	6143535	2L_6143535_SNP [dm3] 2L_6143535_SNP [dm6]	G	A	3.940e^-4	0.817	SYNONYMOUS_CODING CG13991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	491870	2L_491870_SNP [dm3] 2L_491870_SNP [dm6]	G	C	3.948e^-4	0.817	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9734404	2R_9734404_SNP [dm3] 2R_13846899_SNP [dm6]	G	A	3.956e^-4	0.817	NON_SYNONYMOUS_CODING CG30484 UPSTREAM Syngr	TF binding site BDTNP1_TFBS_dl
3L	14373509	3L_14373509_SNP [dm3] 3L_14380409_SNP [dm6]	G	A	3.957e^-4	0.817	INTERGENIC
X	5611466	X_5611466_SNP [dm3] X_5717433_SNP [dm6]	G	C	3.961e^-4	0.817	SYNONYMOUS_CODING CG33080	TF binding site mE1_TFBS_chinmo
2R	14609470	2R_14609470_DEL [dm3] 2R_18721965_DEL [dm6]	GTCAATATTTAG...	G	3.962e^-4	0.817	INTRON Hs3st-A
X	2617654	X_2617654_SNP [dm3] X_2723621_SNP [dm6]	C	T	3.970e^-4	0.817	SYNONYMOUS_CODING fs_1_Yb UPSTREAM fs_1_Ya	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13513300	3R_13513300_SNP [dm3] 3R_17687578_SNP [dm6]	A	G	3.971e^-4	0.817	UPSTREAM CG31249 DOWNSTREAM osa INTERGENIC
3R	21382484	3R_21382484_SNP [dm3] 3R_25556762_SNP [dm6]	A	T	3.974e^-4	0.817	INTRON msi
2L	18443282	2L_18443282_SNP [dm3] 2L_18443282_SNP [dm6]	A	G	3.976e^-4	0.817	UPSTREAM RpS26 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_run
2R	18685861	2R_18685861_INS [dm3] 2R_22798356_INS [dm6]	A	AA	3.978e^-4	0.817	UPSTREAM blw & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	14708171	3L_14708171_SNP [dm3] 3L_14715071_SNP [dm6]	C	T	3.988e^-4	0.817	INTRON ome
3R	23957897	3R_23957897_SNP [dm3] 3R_28132175_SNP [dm6]	T	C	3.994e^-4	0.817	INTERGENIC
2L	482547	2L_482547_SNP [dm3] 2L_482547_SNP [dm6]	A	G	3.995e^-4	0.817	INTRON ush
3L	9197043	3L_9197043_SNP [dm3] 3L_9203943_SNP [dm6]	T	A	4.002e^-4	0.817	INTRON Slc45-1
2L	1151111	2L_1151111_SNP [dm3] 2L_1151111_SNP [dm6]	T	C	4.003e^-4	0.817	SYNONYMOUS_CODING Vps29 UPSTREAM Tfb4 DOWNSTREAM capt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	18498932	2L_18498932_SNP [dm3] 2L_18498932_SNP [dm6]	T	A	4.005e^-4	0.817	INTRON kon	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	14320788	3L_14320788_SNP [dm3] 3L_14327688_SNP [dm6]	T	G	4.008e^-4	0.817	INTRON fz
3R	10456018	3R_10456018_SNP [dm3] 3R_14630296_SNP [dm6]	G	A	4.008e^-4	0.817	UPSTREAM Cad88C INTRON CG7886	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16199736	2R_16199736_SNP [dm3] 2R_20312231_SNP [dm6]	T	C	4.011e^-4	0.817	INTRON CG13868	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15335310	3R_15335310_SNP [dm3] 3R_19509588_SNP [dm6]	A	G	4.011e^-4	0.817	INTRON Dys
3L	20571887	3L_20571887_SNP [dm3] 3L_20578787_SNP [dm6]	C	T	4.012e^-4	0.817	INTERGENIC
3L	2015427	3L_2015427_SNP [dm3] 3L_2015427_SNP [dm6]	G	T	4.017e^-4	0.817	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	4590527	2L_4590527_SNP [dm3] 2L_4590527_SNP [dm6]	C	T	4.018e^-4	0.817	INTRON dp
2L	4590549	2L_4590549_SNP [dm3] 2L_4590549_SNP [dm6]	G	C	4.018e^-4	0.817	INTRON dp
3R	16328023	3R_16328023_SNP [dm3] 3R_20502301_SNP [dm6]	A	T	4.024e^-4	0.817	UPSTREAM Dic2 DOWNSTREAM MtnB INTERGENIC
3L	14373161	3L_14373161_SNP [dm3] 3L_14380061_SNP [dm6]	C	G	4.034e^-4	0.817	INTERGENIC
3L	5244117	3L_5244117_SNP [dm3] 3L_5251017_SNP [dm6]	T	A	4.034e^-4	0.817	INTRON shep
3L	5244119	3L_5244119_SNP [dm3] 3L_5251019_SNP [dm6]	C	T	4.034e^-4	0.817	INTRON shep
X	21119242	X_21119242_SNP [dm3] X_21248215_SNP [dm6]	T	C	4.037e^-4	0.817	INTRON CG32521
3L	2918492	3L_2918492_SNP [dm3] 3L_2918492_SNP [dm6]	G	T	4.045e^-4	0.817	INTRON Shab
2R	9239461	2R_9239461_SNP [dm3] 2R_13351956_SNP [dm6]	G	C	4.046e^-4	0.817	INTRON CR44206	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12872746	3L_12872746_SNP [dm3] 3L_12879646_SNP [dm6]	C	T	4.049e^-4	0.817	INTERGENIC
3R	6202841	3R_6202841_SNP [dm3] 3R_10377119_SNP [dm6]	G	T	4.053e^-4	0.817	INTRON Rfx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	5857382	3L_5857382_SNP [dm3] 3L_5864282_SNP [dm6]	A	T	4.054e^-4	0.817	INTERGENIC
3L	898314	3L_898314_SNP [dm3] 3L_898314_SNP [dm6]	C	T	4.055e^-4	0.817	SYNONYMOUS_CODING CG34057 DOWNSTREAM CG34056	TF binding site mE1_TFBS_sens
3L	8810734	3L_8810734_SNP [dm3] 3L_8817634_SNP [dm6]	C	G	4.066e^-4	0.817	INTERGENIC
3R	21186760	3R_21186760_INS [dm3] 3R_25361038_INS [dm6]	A	AGTTTCCCA	4.073e^-4	0.817	INTRON Fur1	TF binding site mE1_TFBS_inv
2L	787020	2L_787020_SNP [dm3] 2L_787020_SNP [dm6]	G	A	4.074e^-4	0.817	SYNONYMOUS_CODING Pkg21D UTR_3_PRIME CG3544 DOWNSTREAM CG3544	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	24048662	3R_24048662_SNP [dm3] 3R_28222940_SNP [dm6]	C	G	4.080e^-4	0.817	INTRON CG34354
2L	3477382	2L_3477382_SNP [dm3] 2L_3477382_SNP [dm6]	A	C	4.080e^-4	0.817	EXON CR43928	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	401643	2L_401643_SNP [dm3] 2L_401643_SNP [dm6]	T	C	4.080e^-4	0.817	SYNONYMOUS_CODING CG4213	TF binding site mE1_TFBS_cad
X	20506626	X_20506626_DEL [dm3] X_20635599_DEL [dm6]	CTGTAC	C	4.088e^-4	0.817	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3R	23810126	3R_23810126_SNP [dm3] 3R_27984404_SNP [dm6]	C	T	4.091e^-4	0.817	INTRON betaTub97EF
2R	16159179	2R_16159179_SNP [dm3] 2R_20271674_SNP [dm6]	C	T	4.093e^-4	0.817	UTR_3_PRIME CG10444 DOWNSTREAM CG8908
3L	19882269	3L_19882269_SNP [dm3] 3L_19889169_SNP [dm6]	T	C	4.099e^-4	0.817	UTR_3_PRIME Su_Tpl_ UPSTREAM Mi-2 INTRON Mi-2
2R	4085054	2R_4085054_SNP [dm3] 2R_8197549_SNP [dm6]	G	A	4.112e^-4	0.817	INTRON LRP1
3L	6896118	3L_6896118_SNP [dm3] 3L_6903018_SNP [dm6]	C	T	4.114e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8671878	2L_8671878_SNP [dm3] 2L_8671878_SNP [dm6]	C	T	4.122e^-4	0.817	UTR_3_PRIME Sema-1a UPSTREAM Glt
3R	17187386	3R_17187386_SNP [dm3] 3R_21361664_SNP [dm6]	C	T	4.124e^-4	0.817	DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_ & 2 others
2L	413285	2L_413285_SNP [dm3] 2L_413285_SNP [dm6]	G	A	4.128e^-4	0.817	UPSTREAM AP-2alpha INTRON AP-2alpha
X	6334558	X_6334558_SNP [dm3] X_6440525_SNP [dm6]	A	T	4.134e^-4	0.817	INTRON CG42340
X	12584472	X_12584472_SNP [dm3] X_12690439_SNP [dm6]	G	A	4.135e^-4	0.817	SYNONYMOUS_CODING Smr	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_kni BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26523042	3R_26523042_SNP [dm3] 3R_30697320_SNP [dm6]	A	T	4.145e^-4	0.817	UPSTREAM Pka-C2 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
3L	12872471	3L_12872471_INS [dm3] 3L_12879371_INS [dm6]	G	GA	4.146e^-4	0.817	INTERGENIC
3R	6552403	3R_6552403_SNP [dm3] 3R_10726681_SNP [dm6]	C	A	4.150e^-4	0.817	INTERGENIC
3L	14270634	3L_14270634_SNP [dm3] 3L_14277534_SNP [dm6]	T	G	4.153e^-4	0.817	INTRON fz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	16796640	2L_16796640_SNP [dm3] 2L_16796640_SNP [dm6]	A	G	4.153e^-4	0.817	NON_SYNONYMOUS_CODING Ugt36Bb DOWNSTREAM Ugt36Ba
2L	8835065	2L_8835065_SNP [dm3] 2L_8835065_SNP [dm6]	C	G	4.154e^-4	0.817	INTERGENIC
3R	7067098	3R_7067098_SNP [dm3] 3R_11241376_SNP [dm6]	T	A	4.155e^-4	0.817	UPSTREAM scpr-B DOWNSTREAM CG17734 INTRON scpr-A
2L	12723002	2L_12723002_SNP [dm3] 2L_12723002_SNP [dm6]	G	A	4.160e^-4	0.817	SYNONYMOUS_CODING MRP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
X	15634701	X_15634701_INS [dm3] X_15740668_INS [dm6]	A	TGG	4.162e^-4	0.817	DOWNSTREAM CG8206 & 1 other INTERGENIC	TF binding site mE1_TFBS_cnc
2R	20623243	2R_20623243_SNP [dm3] 2R_24735720_SNP [dm6]	A	C	4.165e^-4	0.817	INTRON Mid1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12530517	3L_12530517_SNP [dm3] 3L_12537417_SNP [dm6]	G	A	4.169e^-4	0.817	UPSTREAM CG4069 DOWNSTREAM sowah INTERGENIC
X	7535277	X_7535277_INS [dm3] X_7641244_INS [dm6]	T	TCT	4.186e^-4	0.817	INTRON ct	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	15247161	3R_15247161_SNP [dm3] 3R_19421439_SNP [dm6]	A	G	4.191e^-4	0.817	INTRON CG31221
3R	23942611	3R_23942611_SNP [dm3] 3R_28116889_SNP [dm6]	G	A	4.196e^-4	0.817	INTERGENIC
3R	7878833	3R_7878833_INS [dm3] 3R_12053111_INS [dm6]	A	ATC	4.200e^-4	0.817	INTERGENIC
2L	10694284	2L_10694284_SNP [dm3] 2L_10694284_SNP [dm6]	G	T	4.200e^-4	0.817	UPSTREAM CR44181 & 1 other DOWNSTREAM CG7300 INTERGENIC
2L	10694287	2L_10694287_SNP [dm3] 2L_10694287_SNP [dm6]	T	A	4.200e^-4	0.817	UPSTREAM CR44181 & 1 other DOWNSTREAM CG7300 INTERGENIC
2L	10694307	2L_10694307_SNP [dm3] 2L_10694307_SNP [dm6]	A	C	4.200e^-4	0.817	UPSTREAM CR44181 & 1 other DOWNSTREAM CG7300 INTERGENIC
2L	10694329	2L_10694329_SNP [dm3] 2L_10694329_SNP [dm6]	G	A	4.200e^-4	0.817	UPSTREAM CR44181 & 1 other DOWNSTREAM CG7300 INTERGENIC
2L	10694334	2L_10694334_SNP [dm3] 2L_10694334_SNP [dm6]	T	A	4.200e^-4	0.817	UPSTREAM CR44181 & 1 other DOWNSTREAM CG7300 INTERGENIC
2R	11091999	2R_11091999_DEL [dm3] 2R_15204494_DEL [dm6]	ATTGTAT	A	4.213e^-4	0.817	UPSTREAM Ir51a DOWNSTREAM CG11807 INTERGENIC
3R	4807483	3R_4807483_SNP [dm3] 3R_8981761_SNP [dm6]	T	G	4.217e^-4	0.817	DOWNSTREAM RagA-B INTRON CAHbeta
2L	5457477	2L_5457477_SNP [dm3] 2L_5457477_SNP [dm6]	T	C	4.223e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_slp1
2R	5929490	2R_5929490_SNP [dm3] 2R_10041985_SNP [dm6]	A	T	4.231e^-4	0.817	SYNONYMOUS_CODING CG34220 INTRON oys	TF binding site mE1_TFBS_HSA
3R	23926779	3R_23926779_SNP [dm3] 3R_28101057_SNP [dm6]	C	G	4.235e^-4	0.817	INTERGENIC
X	7193659	X_7193659_INS [dm3] X_7299626_INS [dm6]	G	CGAAT	4.236e^-4	0.817	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	7977061	3L_7977061_SNP [dm3] 3L_7983961_SNP [dm6]	A	G	4.243e^-4	0.817	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14290637	2R_14290637_INS [dm3] 2R_18403132_INS [dm6]	T	TT	4.245e^-4	0.817	UPSTREAM GstE4 DOWNSTREAM CR43687 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2R	5939070	2R_5939070_SNP [dm3] 2R_10051565_SNP [dm6]	T	C	4.247e^-4	0.817	SYNONYMOUS_CODING sel UPSTREAM magu DOWNSTREAM CG44296	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15941171	3L_15941171_SNP [dm3] 3L_15948071_SNP [dm6]	T	A	4.251e^-4	0.817	INTRON Pka-C3
3R	15335183	3R_15335183_SNP [dm3] 3R_19509461_SNP [dm6]	T	A	4.257e^-4	0.817	INTRON Dys	TF binding site BDTNP1_TFBS_dl
X	4521853	X_4521853_SNP [dm3] X_4627820_SNP [dm6]	G	C	4.270e^-4	0.817	SPLICE_SITE_REGION CG12184 DOWNSTREAM peb INTRON CG12184
3L	2002889	3L_2002889_SNP [dm3] 3L_2002889_SNP [dm6]	C	T	4.271e^-4	0.817	DOWNSTREAM CG42841 INTERGENIC
3R	17703857	3R_17703857_SNP [dm3] 3R_21878135_SNP [dm6]	G	A	4.273e^-4	0.817	UTR_5_PRIME P5CDh2 DOWNSTREAM CR45046 & 1 other INTRON P5CDh2 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	2379988	2L_2379988_SNP [dm3] 2L_2379988_SNP [dm6]	A	G	4.275e^-4	0.817	SYNONYMOUS_CODING Atxn7	TF binding site mE1_TFBS_chinmo
2L	5815098	2L_5815098_SNP [dm3] 2L_5815098_SNP [dm6]	T	A	4.276e^-4	0.817	INTERGENIC	TF binding site mE1_TFBS_inv
3L	12103714	3L_12103714_SNP [dm3] 3L_12110614_SNP [dm6]	A	T	4.276e^-4	0.817	INTERGENIC
3L	16283555	3L_16283555_SNP [dm3] 3L_16290455_SNP [dm6]	A	G	4.290e^-4	0.817	NON_SYNONYMOUS_CODING CG13045
3R	23921142	3R_23921142_SNP [dm3] 3R_28095420_SNP [dm6]	C	A	4.297e^-4	0.817	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	6037569	3R_6037569_SNP [dm3] 3R_10211847_SNP [dm6]	T	A	4.299e^-4	0.817	INTRON Syn & 1 other
2L	667291	2L_667291_SNP [dm3] 2L_667291_SNP [dm6]	G	C	4.299e^-4	0.817	INTRON ds	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	6144294	2L_6144294_SNP [dm3] 2L_6144294_SNP [dm6]	T	C	4.303e^-4	0.817	SYNONYMOUS_CODING CG13991	TF binding site mE1_TFBS_chinmo
3R	5965351	3R_5965351_SNP [dm3] 3R_10139629_SNP [dm6]	C	A	4.303e^-4	0.817	UTR_5_PRIME tws DOWNSTREAM TAF1B	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	25518976	3R_25518976_SNP [dm3] 3R_29693254_SNP [dm6]	A	G	4.317e^-4	0.817	INTRON dmrt99B	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
X	18380818	X_18380818_SNP [dm3] X_18486785_SNP [dm6]	A	T	4.317e^-4	0.817	UTR_5_PRIME psh DOWNSTREAM CG15046
2L	15254063	2L_15254063_SNP [dm3] 2L_15254063_SNP [dm6]	A	G	4.319e^-4	0.817	UTR_3_PRIME dao DOWNSTREAM dao & 1 other
2R	15331380	2R_15331380_SNP [dm3] 2R_19443875_SNP [dm6]	T	G	4.334e^-4	0.817	UPSTREAM Arl6 DOWNSTREAM snoRNA:Psi28S-2444 & 1 other INTERGENIC
2L	1021878	2L_1021878_SNP [dm3] 2L_1021878_SNP [dm6]	G	A	4.344e^-4	0.817	INTRON IA-2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	788331	2L_788331_SNP [dm3] 2L_788331_SNP [dm6]	G	A	4.344e^-4	0.817	SYNONYMOUS_CODING Pkg21D UTR_3_PRIME CG3544	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14316686	3L_14316686_INS [dm3] 3L_14323586_INS [dm6]	C	CAGC	4.349e^-4	0.817	INTRON fz & 1 other
2R	8554684	2R_8554684_SNP [dm3] 2R_12667179_SNP [dm6]	A	G	4.353e^-4	0.817	INTRON nemy
3R	25025402	3R_25025402_SNP [dm3] 3R_29199680_SNP [dm6]	G	A	4.356e^-4	0.817	UPSTREAM CG11899 DOWNSTREAM CG14515 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	16402815	2R_16402815_SNP [dm3] 2R_20515310_SNP [dm6]	A	C	4.365e^-4	0.817	INTERGENIC
2L	8835071	2L_8835071_SNP [dm3] 2L_8835071_SNP [dm6]	A	T	4.366e^-4	0.817	INTERGENIC
3R	25410916	3R_25410916_SNP [dm3] 3R_29585194_SNP [dm6]	A	G	4.367e^-4	0.817	INTERGENIC
2L	12515616	2L_12515616_SNP [dm3] 2L_12515616_SNP [dm6]	T	C	4.371e^-4	0.817	INTRON bun
3R	10281502	3R_10281502_SNP [dm3] 3R_14455780_SNP [dm6]	T	C	4.371e^-4	0.817	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb
X	2881667	X_2881667_SNP [dm3] X_2987634_SNP [dm6]	T	G	4.372e^-4	0.817	INTRON kirre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	8247177	3L_8247177_DEL [dm3] 3L_8254077_DEL [dm6]	TG	T	4.380e^-4	0.817	INTRON Dscam4
2L	3598074	2L_3598074_SNP [dm3] 2L_3598074_SNP [dm6]	C	T	4.384e^-4	0.817	INTERGENIC
2R	9686521	2R_9686521_SNP [dm3] 2R_13799016_SNP [dm6]	T	C	4.385e^-4	0.817	INTRON Cpr50Cb
3L	10944255	3L_10944255_SNP [dm3] 3L_10951155_SNP [dm6]	G	A	4.389e^-4	0.817	INTERGENIC
X	3171160	X_3171160_SNP [dm3] X_3277127_SNP [dm6]	C	A	4.394e^-4	0.817	INTRON dnc
X	3171163	X_3171163_SNP [dm3] X_3277130_SNP [dm6]	A	T	4.394e^-4	0.817	INTRON dnc
2L	16298416	2L_16298416_SNP [dm3] 2L_16298416_SNP [dm6]	C	A	4.414e^-4	0.817	INTRON heix	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2028429	3L_2028429_SNP [dm3] 3L_2028429_SNP [dm6]	A	C	4.416e^-4	0.817	DOWNSTREAM CG34259 INTERGENIC
3L	2026078	3L_2026078_SNP [dm3] 3L_2026078_SNP [dm6]	T	G	4.422e^-4	0.817	UPSTREAM CG34259 INTERGENIC
3L	22403584	3L_22403584_SNP [dm3] 3L_22410484_SNP [dm6]	A	C	4.428e^-4	0.817	INTERGENIC	TF binding site mE1_TFBS_inv
2L	5499704	2L_5499704_SNP [dm3] 2L_5499704_SNP [dm6]	G	T	4.437e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	15335166	3R_15335166_SNP [dm3] 3R_19509444_SNP [dm6]	T	A	4.439e^-4	0.817	INTRON Dys	TF binding site BDTNP1_TFBS_dl
3R	10292658	3R_10292658_SNP [dm3] 3R_14466936_SNP [dm6]	C	T	4.442e^-4	0.817	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	17963546	3L_17963546_SNP [dm3] 3L_17970446_SNP [dm6]	C	T	4.442e^-4	0.817	NON_SYNONYMOUS_CODING Eip75B INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10944262	3L_10944262_SNP [dm3] 3L_10951162_SNP [dm6]	T	C	4.446e^-4	0.817	INTERGENIC
3R	11218771	3R_11218771_SNP [dm3] 3R_15393049_SNP [dm6]	C	T	4.449e^-4	0.817	INTRON Rbp
3R	25525800	3R_25525800_SNP [dm3] 3R_29700078_SNP [dm6]	A	T	4.467e^-4	0.817	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	8737075	X_8737075_SNP [dm3] X_8843042_SNP [dm6]	A	G	4.472e^-4	0.817	INTRON CG12075
3R	19299363	3R_19299363_DEL [dm3] 3R_23473641_DEL [dm6]	AA	A	4.472e^-4	0.817	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	17431989	2L_17431989_SNP [dm3] 2L_17431989_SNP [dm6]	C	T	4.482e^-4	0.817	INTRON Dif
2L	16334174	2L_16334174_SNP [dm3] 2L_16334174_SNP [dm6]	C	T	4.483e^-4	0.817	NON_SYNONYMOUS_CODING CG31817	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26571008	3R_26571008_SNP [dm3] 3R_30745286_SNP [dm6]	C	A	4.488e^-4	0.817	UPSTREAM Npc2g DOWNSTREAM CG15543 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	4250770	2R_4250770_SNP [dm3] 2R_8363265_SNP [dm6]	T	A	4.493e^-4	0.817	UPSTREAM whip DOWNSTREAM cola & 1 other INTRON pdm3
2R	4250806	2R_4250806_INS [dm3] 2R_8363301_INS [dm6]	A	TG	4.493e^-4	0.817	UTR_3_PRIME swif & 1 other UPSTREAM whip DOWNSTREAM swif INTRON pdm3
2R	4250810	2R_4250810_SNP [dm3] 2R_8363305_SNP [dm6]	C	A	4.493e^-4	0.817	UTR_3_PRIME swif & 1 other UPSTREAM whip DOWNSTREAM swif INTRON pdm3
3R	6725820	3R_6725820_DEL [dm3] 3R_10900098_DEL [dm6]	GTAATG	G	4.498e^-4	0.817	INTERGENIC
X	6121980	X_6121980_SNP [dm3] X_6227947_SNP [dm6]	C	G	4.499e^-4	0.817	INTRON CG14446	TF binding site mE1_TFBS_sens
3L	7002902	3L_7002902_SNP [dm3] 3L_7009802_SNP [dm6]	T	A	4.499e^-4	0.817	INTRON Mp
3L	5210029	3L_5210029_SNP [dm3] 3L_5216929_SNP [dm6]	A	C	4.508e^-4	0.817	INTRON shep
3R	15334586	3R_15334586_SNP [dm3] 3R_19508864_SNP [dm6]	C	T	4.511e^-4	0.817	UPSTREAM Dys INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	8715606	2L_8715606_SNP [dm3] 2L_8715606_SNP [dm6]	C	A	4.511e^-4	0.817	INTRON raw
3R	12664320	3R_12664320_SNP [dm3] 3R_16838598_SNP [dm6]	C	A	4.519e^-4	0.817	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	10347564	3R_10347564_SNP [dm3] 3R_14521842_SNP [dm6]	G	T	4.523e^-4	0.817	SPLICE_SITE_REGION Cyp313a1 INTRON Pde6 & 1 other
X	3171826	X_3171826_SNP [dm3] X_3277793_SNP [dm6]	G	A	4.530e^-4	0.817	INTRON dnc
3R	22624376	3R_22624376_SNP [dm3] 3R_26798654_SNP [dm6]	T	A	4.539e^-4	0.817	UPSTREAM Tl INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	14270543	3L_14270543_SNP [dm3] 3L_14277443_SNP [dm6]	G	A	4.542e^-4	0.817	INTRON fz	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	3856940	X_3856940_SNP [dm3] X_3962907_SNP [dm6]	A	G	4.543e^-4	0.817	SYNONYMOUS_CODING lva	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8247311	3L_8247311_SNP [dm3] 3L_8254211_SNP [dm6]	G	A	4.549e^-4	0.817	INTRON Dscam4
2R	17322361	2R_17322361_SNP [dm3] 2R_21434856_SNP [dm6]	C	A	4.550e^-4	0.817	INTRON Sdc
3R	12671573	3R_12671573_SNP [dm3] 3R_16845851_SNP [dm6]	T	A	4.558e^-4	0.817	INTRON iab-8	TF binding site mE1_TFBS_cad
3L	18339623	3L_18339623_SNP [dm3] 3L_18346523_SNP [dm6]	T	A	4.559e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	3659001	3L_3659001_SNP [dm3] 3L_3659001_SNP [dm6]	A	G	4.572e^-4	0.817	UPSTREAM CG43098 INTERGENIC
3R	20657377	3R_20657377_SNP [dm3] 3R_24831655_SNP [dm6]	G	A	4.572e^-4	0.817	DOWNSTREAM CG43273 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	8352155	3L_8352155_SNP [dm3] 3L_8359055_SNP [dm6]	G	A	4.577e^-4	0.817	START_GAINED Idh UTR_5_PRIME Idh UPSTREAM Idh INTRON Idh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	6690208	2R_6690208_SNP [dm3] 2R_10802703_SNP [dm6]	G	A	4.578e^-4	0.817	NON_SYNONYMOUS_CODING wde	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14320891	3L_14320891_SNP [dm3] 3L_14327791_SNP [dm6]	G	T	4.581e^-4	0.817	INTRON fz
2L	5540656	2L_5540656_SNP [dm3] 2L_5540656_SNP [dm6]	C	T	4.608e^-4	0.817	UTR_3_PRIME Hel25E INTRON Hel25E	TF binding site BDTNP1_TFBS_z mE1_TFBS_sens
2L	5540664	2L_5540664_SNP [dm3] 2L_5540664_SNP [dm6]	T	A	4.608e^-4	0.817	UTR_3_PRIME Hel25E INTRON Hel25E	TF binding site BDTNP1_TFBS_z mE1_TFBS_sens
3R	24480791	3R_24480791_SNP [dm3] 3R_28655069_SNP [dm6]	A	G	4.608e^-4	0.817	INTERGENIC
2L	9876945	2L_9876945_SNP [dm3] 2L_9876945_SNP [dm6]	C	T	4.610e^-4	0.817	INTRON nAChRalpha6
2R	5929469	2R_5929469_SNP [dm3] 2R_10041964_SNP [dm6]	A	G	4.619e^-4	0.817	SYNONYMOUS_CODING CG34220 INTRON oys	TF binding site mE1_TFBS_HSA
3L	11524985	3L_11524985_SNP [dm3] 3L_11531885_SNP [dm6]	T	C	4.622e^-4	0.817	INTRON Mob2
3R	13372337	3R_13372337_SNP [dm3] 3R_17546615_SNP [dm6]	C	A	4.628e^-4	0.817	UPSTREAM Prx3 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6043041	3R_6043041_SNP [dm3] 3R_10217319_SNP [dm6]	G	A	4.636e^-4	0.817	SYNONYMOUS_CODING Syn	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
X	11962569	X_11962569_SNP [dm3] X_12068536_SNP [dm6]	C	T	4.637e^-4	0.817	INTRON CR43960 & 1 other EXON CR43961
X	2611778	X_2611778_SNP [dm3] X_2717745_SNP [dm6]	C	T	4.638e^-4	0.817	SYNONYMOUS_CODING CG2701 DOWNSTREAM CG2694	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6587206	3L_6587206_SNP [dm3] 3L_6594106_SNP [dm6]	A	C	4.640e^-4	0.817	SYNONYMOUS_CODING ndl DOWNSTREAM CG18769
3R	13557334	3R_13557334_SNP [dm3] 3R_17731612_SNP [dm6]	G	T	4.644e^-4	0.817	SYNONYMOUS_CODING Lgr1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	3762825	3R_3762825_SNP [dm3] 3R_7937103_SNP [dm6]	T	C	4.644e^-4	0.817	INTRON dsx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13076238	2L_13076238_INS [dm3] 2L_13076238_INS [dm6]	T	TGATCTTT	4.645e^-4	0.817	INTERGENIC
2L	19690804	2L_19690804_DEL [dm3] 2L_19690804_DEL [dm6]	TGTGTTTGT	T	4.645e^-4	0.817	INTRON Lar
3R	7877524	3R_7877524_SNP [dm3] 3R_12051802_SNP [dm6]	C	A	4.649e^-4	0.817	INTERGENIC
3R	6553257	3R_6553257_SNP [dm3] 3R_10727535_SNP [dm6]	T	C	4.658e^-4	0.817	INTERGENIC
X	12189422	X_12189422_SNP [dm3] X_12295389_SNP [dm6]	C	A	4.670e^-4	0.817	INTRON Ten-a
2R	14992028	2R_14992028_SNP [dm3] 2R_19104523_SNP [dm6]	T	C	4.671e^-4	0.817	INTRON 5-HT1A
2R	8445562	2R_8445562_SNP [dm3] 2R_12558057_SNP [dm6]	T	C	4.677e^-4	0.817	INTRON fra
3R	18909418	3R_18909418_SNP [dm3] 3R_23083696_SNP [dm6]	T	C	4.682e^-4	0.817	INTRON CG13830	TF binding site mE1_TFBS_chinmo
2R	12687356	2R_12687356_DEL [dm3] 2R_16799851_DEL [dm6]	TGGTGAATT	T	4.691e^-4	0.817	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
2R	7651608	2R_7651608_SNP [dm3] 2R_11764103_SNP [dm6]	G	A	4.694e^-4	0.817	INTRON ths
3L	19941682	3L_19941682_INS [dm3] 3L_19948582_INS [dm6]	T	TGTAATTAAAAAAACGTATA...	4.707e^-4	0.817	INTRON Ac76E
3L	882763	3L_882763_SNP [dm3] 3L_882763_SNP [dm6]	G	A	4.709e^-4	0.817	UPSTREAM CG13907 INTRON CG32479	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	19211025	3R_19211025_SNP [dm3] 3R_23385303_SNP [dm6]	C	T	4.720e^-4	0.817	UPSTREAM CG4393 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	22577492	3R_22577492_SNP [dm3] 3R_26751770_SNP [dm6]	G	T	4.721e^-4	0.817	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18498861	2L_18498861_SNP [dm3] 2L_18498861_SNP [dm6]	T	G	4.722e^-4	0.817	INTRON kon	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	17394778	3L_17394778_SNP [dm3] 3L_17401678_SNP [dm6]	C	T	4.724e^-4	0.817	SYNONYMOUS_CODING blot UPSTREAM noe	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	17912564	2R_17912564_SNP [dm3] 2R_22025059_SNP [dm6]	G	T	4.727e^-4	0.817	INTRON CG34370
3L	2792259	3L_2792259_SNP [dm3] 3L_2792259_SNP [dm6]	C	A	4.727e^-4	0.817	SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_cad
3R	15091860	3R_15091860_SNP [dm3] 3R_19266138_SNP [dm6]	C	G	4.741e^-4	0.817	INTERGENIC
2R	19083321	2R_19083321_SNP [dm3] 2R_23195798_SNP [dm6]	A	G	4.743e^-4	0.817	INTRON CG34371	TF binding site BDTNP1_TFBS_twi
2L	7393015	2L_7393015_SNP [dm3] 2L_7393015_SNP [dm6]	A	G	4.745e^-4	0.817	INTRON CG5160
X	18380699	X_18380699_SNP [dm3] X_18486666_SNP [dm6]	G	A	4.750e^-4	0.817	UTR_5_PRIME psh DOWNSTREAM CG15046
3R	21286937	3R_21286937_SNP [dm3] 3R_25461215_SNP [dm6]	G	T	4.758e^-4	0.817	INTRON Fur1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	23947978	3R_23947978_SNP [dm3] 3R_28122256_SNP [dm6]	T	C	4.760e^-4	0.817	INTERGENIC
3L	18185990	3L_18185990_SNP [dm3] 3L_18192890_SNP [dm6]	A	T	4.765e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	23204851	3R_23204851_SNP [dm3] 3R_27379129_SNP [dm6]	C	T	4.766e^-4	0.817	UTR_3_PRIME side INTRON side
2L	735486	2L_735486_SNP [dm3] 2L_735486_SNP [dm6]	A	T	4.784e^-4	0.817	INTERGENIC
2L	653578	2L_653578_SNP [dm3] 2L_653578_SNP [dm6]	A	G	4.787e^-4	0.817	INTRON ds
X	9687111	X_9687111_SNP [dm3] X_9793078_SNP [dm6]	T	A	4.787e^-4	0.817	INTRON CG32698
3L	20281020	3L_20281020_INS [dm3] 3L_20287920_INS [dm6]	A	ATTATATTAATTCCCCA...	4.795e^-4	0.817	INTRON gogo	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	12190056	X_12190056_SNP [dm3] X_12296023_SNP [dm6]	G	A	4.797e^-4	0.817	INTRON Ten-a
2L	5487664	2L_5487664_SNP [dm3] 2L_5487664_SNP [dm6]	G	A	4.797e^-4	0.817	DOWNSTREAM CR45287 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	15316937	2L_15316937_SNP [dm3] 2L_15316937_SNP [dm6]	G	A	4.801e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	9728125	3R_9728125_SNP [dm3] 3R_13902403_SNP [dm6]	C	T	4.804e^-4	0.817	SYNONYMOUS_CODING ems	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16844362	X_16844362_SNP [dm3] X_16950329_SNP [dm6]	C	T	4.804e^-4	0.817	INTRON RhoGAP15B
2L	7252027	2L_7252027_SNP [dm3] 2L_7252027_SNP [dm6]	C	T	4.816e^-4	0.817	NON_SYNONYMOUS_CODING CG13786	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	7252076	2L_7252076_SNP [dm3] 2L_7252076_SNP [dm6]	G	T	4.816e^-4	0.817	SYNONYMOUS_CODING CG13786	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	7252442	2L_7252442_SNP [dm3] 2L_7252442_SNP [dm6]	G	A	4.816e^-4	0.817	SYNONYMOUS_CODING CG13786
3R	5723833	3R_5723833_SNP [dm3] 3R_9898111_SNP [dm6]	A	C	4.830e^-4	0.817	INTRON Glut4EF
3R	11459294	3R_11459294_SNP [dm3] 3R_15633572_SNP [dm6]	T	C	4.832e^-4	0.817	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	13470164	3L_13470164_SNP [dm3] 3L_13477064_SNP [dm6]	T	A	4.847e^-4	0.817	UPSTREAM stv INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl

By genomic position
Variant impact
Gene name

Aggression_GSEI phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results