DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.741e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.000217
In_2R_NS	0.010250

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	7.0884	0.0289

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

3084 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	13702977	2L_13702977_SNP [dm3] 2L_13702977_SNP [dm6]	T	C	1.287e^-7	0.147	INTRON CG31814
2R	19047952	2R_19047952_SNP [dm3] 2R_23160429_SNP [dm6]	A	G	4.573e^-7	0.147	SYNONYMOUS_CODING CG9899
3R	27132533	3R_27132533_SNP [dm3] 3R_31306811_SNP [dm6]	C	T	5.733e^-7	0.147	INTERGENIC
2L	4827156	2L_4827156_SNP [dm3] 2L_4827156_SNP [dm6]	C	T	5.889e^-7	0.147	INTRON CG15628	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	12662148	3R_12662148_SNP [dm3] 3R_16836426_SNP [dm6]	T	G	7.180e^-7	0.147	INTRON iab-8
3L	13974548	3L_13974548_SNP [dm3] 3L_13981448_SNP [dm6]	G	A	7.919e^-7	0.147	UTR_3_PRIME CG17364 INTRON CG17364
2L	4829444	2L_4829444_SNP [dm3] 2L_4829444_SNP [dm6]	A	C	8.361e^-7	0.147	UTR_3_PRIME CG2976 DOWNSTREAM CG15628 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	985159	2L_985159_SNP [dm3] 2L_985159_SNP [dm6]	G	A	9.093e^-7	0.147	INTERGENIC
3L	9355374	3L_9355374_SNP [dm3] 3L_9362274_SNP [dm6]	A	G	9.152e^-7	0.147	NON_SYNONYMOUS_CODING CG34456 DOWNSTREAM Klp67A & 1 other
2L	4830032	2L_4830032_SNP [dm3] 2L_4830032_SNP [dm6]	C	T	9.666e^-7	0.147	SPLICE_SITE_REGION CG2976 DOWNSTREAM Ir25a INTRON CG2976 EXON mir-4912	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	4831046	2L_4831046_SNP [dm3] 2L_4831046_SNP [dm6]	C	G	1.140e^-6	0.147	SYNONYMOUS_CODING Ir25a UPSTREAM CG2976	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	20535175	2L_20535175_SNP [dm3] 2L_20535175_SNP [dm6]	C	G	1.182e^-6	0.147	INTERGENIC
2L	3563440	2L_3563440_SNP [dm3] 2L_3563440_SNP [dm6]	C	T	1.439e^-6	0.147	DOWNSTREAM CR44309 EXON CR44747	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	976080	2L_976080_SNP [dm3] 2L_976080_SNP [dm6]	C	A	1.511e^-6	0.147	INTERGENIC
2L	992660	2L_992660_SNP [dm3] 2L_992660_SNP [dm6]	G	T	1.511e^-6	0.147	INTERGENIC
2L	993871	2L_993871_DEL [dm3] 2L_993871_DEL [dm6]	CGCTACA	T	1.511e^-6	0.147	INTERGENIC
2L	993879	2L_993879_SNP [dm3] 2L_993879_SNP [dm6]	G	T	1.511e^-6	0.147	INTERGENIC
2L	6832743	2L_6832743_SNP [dm3] 2L_6832743_SNP [dm6]	C	T	1.655e^-6	0.147	INTRON sens-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	706978	2L_706978_SNP [dm3] 2L_706978_SNP [dm6]	T	C	1.680e^-6	0.147	SYNONYMOUS_CODING ds	TF binding site mE1_TFBS_HSA
2L	996469	2L_996469_SNP [dm3] 2L_996469_SNP [dm6]	C	T	1.717e^-6	0.147	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	1006671	2L_1006671_SNP [dm3] 2L_1006671_SNP [dm6]	C	T	1.785e^-6	0.147	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2L	1006758	2L_1006758_SNP [dm3] 2L_1006758_SNP [dm6]	A	C	1.785e^-6	0.147	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2L	7049216	2L_7049216_SNP [dm3] 2L_7049216_SNP [dm6]	G	C	1.945e^-6	0.147	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2L	7049229	2L_7049229_SNP [dm3] 2L_7049229_SNP [dm6]	C	T	1.945e^-6	0.147	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2L	4724194	2L_4724194_SNP [dm3] 2L_4724194_SNP [dm6]	A	G	2.019e^-6	0.147	INTERGENIC
2L	4712309	2L_4712309_SNP [dm3] 2L_4712309_SNP [dm6]	C	T	2.150e^-6	0.151	SYNONYMOUS_CODING CG34351
2L	3294675	2L_3294675_SNP [dm3] 2L_3294675_SNP [dm6]	A	G	2.424e^-6	0.162	UTR_5_PRIME CG9664 DOWNSTREAM CG9663
2L	976624	2L_976624_SNP [dm3] 2L_976624_SNP [dm6]	G	T	2.492e^-6	0.162	INTERGENIC
2L	12566647	2L_12566647_SNP [dm3] 2L_12566647_SNP [dm6]	A	G	2.753e^-6	0.164	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4831614	2L_4831614_SNP [dm3] 2L_4831614_SNP [dm6]	G	A	2.810e^-6	0.164	SYNONYMOUS_CODING Ir25a UPSTREAM CG2976	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23124694	3R_23124694_SNP [dm3] 3R_27298972_SNP [dm6]	C	T	2.816e^-6	0.164	INTRON CG3339
3R	23167732	3R_23167732_SNP [dm3] 3R_27342010_SNP [dm6]	C	A	2.951e^-6	0.164	INTRON CG42534
3R	23168134	3R_23168134_SNP [dm3] 3R_27342412_SNP [dm6]	T	C	2.968e^-6	0.164	INTRON CG42534
2L	3481218	2L_3481218_SNP [dm3] 2L_3481218_SNP [dm6]	C	T	3.178e^-6	0.17	SYNONYMOUS_CODING CG15414	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4830538	2L_4830538_SNP [dm3] 2L_4830538_SNP [dm6]	C	T	3.406e^-6	0.176	NON_SYNONYMOUS_CODING CG2976 UPSTREAM mir-4912 DOWNSTREAM Ir25a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
2R	7913418	2R_7913418_SNP [dm3] 2R_12025913_SNP [dm6]	T	A	3.675e^-6	0.176	SYNONYMOUS_CODING Mppe UPSTREAM CG8964	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9357894	3L_9357894_SNP [dm3] 3L_9364794_SNP [dm6]	C	A	3.716e^-6	0.176	SYNONYMOUS_CODING CG4447 INTRON Klp67A	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	2827498	2L_2827498_SNP [dm3] 2L_2827498_SNP [dm6]	A	T	3.807e^-6	0.176	INTRON Duox
2L	821864	2L_821864_SNP [dm3] 2L_821864_SNP [dm6]	C	A	3.816e^-6	0.176	UTR_5_PRIME CG3662 DOWNSTREAM Clp INTRON CG3662	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	9355503	3L_9355503_SNP [dm3] 3L_9362403_SNP [dm6]	G	T	3.875e^-6	0.176	NON_SYNONYMOUS_CODING CG34456 DOWNSTREAM Klp67A & 1 other
3R	27132378	3R_27132378_SNP [dm3] 3R_31306656_SNP [dm6]	C	T	4.487e^-6	0.186	INTERGENIC	TF binding site mE1_TFBS_cad
2L	987256	2L_987256_SNP [dm3] 2L_987256_SNP [dm6]	T	A	4.497e^-6	0.186	DOWNSTREAM CR44801 INTERGENIC
2R	16857695	2R_16857695_SNP [dm3] 2R_20970190_SNP [dm6]	A	C	4.553e^-6	0.186	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	994688	2L_994688_SNP [dm3] 2L_994688_SNP [dm6]	G	T	4.634e^-6	0.186	INTERGENIC
2L	2077187	2L_2077187_SNP [dm3] 2L_2077187_SNP [dm6]	C	T	4.700e^-6	0.186	INTRON dpr3
2L	1848969	2L_1848969_SNP [dm3] 2L_1848969_SNP [dm6]	T	G	4.802e^-6	0.186	INTRON wry
2L	15376573	2L_15376573_DEL [dm3] 2L_15376573_DEL [dm6]	TG	T	5.065e^-6	0.186	INTERGENIC
3R	23177373	3R_23177373_SNP [dm3] 3R_27351651_SNP [dm6]	T	A	5.079e^-6	0.186	INTRON CG42534
3R	21003330	3R_21003330_SNP [dm3] 3R_25177608_SNP [dm6]	G	C	5.100e^-6	0.186	INTRON lobo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2412049	2L_2412049_SNP [dm3] 2L_2412049_SNP [dm6]	A	G	5.151e^-6	0.186	INTRON CG18641	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3427559	2L_3427559_DEL [dm3] 2L_3427559_DEL [dm6]	ACCGATGCGAT...	A	5.219e^-6	0.186	UPSTREAM pgant2 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	4835291	2L_4835291_SNP [dm3] 2L_4835291_SNP [dm6]	G	A	5.346e^-6	0.187	UTR_5_PRIME Ir25a UPSTREAM Ir25a DOWNSTREAM tank
3L	9355434	3L_9355434_SNP [dm3] 3L_9362334_SNP [dm6]	G	C	5.706e^-6	0.195	NON_SYNONYMOUS_CODING CG34456 DOWNSTREAM Klp67A & 1 other
2L	3294903	2L_3294903_SNP [dm3] 2L_3294903_SNP [dm6]	T	C	5.795e^-6	0.195	UPSTREAM CG9664 DOWNSTREAM CG9663 INTERGENIC
2R	1841378	2R_1841378_SNP [dm3] 2R_5953873_SNP [dm6]	T	C	5.925e^-6	0.196	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4830920	2L_4830920_SNP [dm3] 2L_4830920_SNP [dm6]	G	C	6.233e^-6	0.203	UTR_3_PRIME Ir25a UPSTREAM mir-4912 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3R	23004895	3R_23004895_SNP [dm3] 3R_27179173_SNP [dm6]	A	G	6.803e^-6	0.21	INTRON Ser
3R	23903630	3R_23903630_SNP [dm3] 3R_28077908_SNP [dm6]	A	C	7.045e^-6	0.21	INTRON CG34362
2L	958456	2L_958456_SNP [dm3] 2L_958456_SNP [dm6]	A	G	7.081e^-6	0.21	DOWNSTREAM CG4341 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	3625006	2L_3625006_SNP [dm3] 2L_3625006_SNP [dm6]	C	T	7.104e^-6	0.21	INTRON for	TF binding site BDTNP1_TFBS_da mE1_TFBS_GATAe mE1_TFBS_HSA
3R	18295966	3R_18295966_SNP [dm3] 3R_22470244_SNP [dm6]	G	A	7.122e^-6	0.21	UTR_5_PRIME Nrx-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_Trl
2L	2873038	2L_2873038_DEL [dm3] 2L_2873038_DEL [dm6]	ATGGTTATAT	A	7.159e^-6	0.21	INTRON CG31694	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	1992664	2L_1992664_DEL [dm3] 2L_1992664_DEL [dm6]	AA	A	7.327e^-6	0.212	UPSTREAM Obp22a INTERGENIC
X	11718588	X_11718588_SNP [dm3] X_11824555_SNP [dm6]	T	A	7.531e^-6	0.214	INTRON rudhira
2L	2746233	2L_2746233_SNP [dm3] 2L_2746233_SNP [dm6]	A	G	7.677e^-6	0.215	SYNONYMOUS_CODING Cwc25 DOWNSTREAM Pgk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	27119780	3R_27119780_SNP [dm3] 3R_31294058_SNP [dm6]	G	C	7.956e^-6	0.22	INTERGENIC
2L	4861953	2L_4861953_DEL [dm3] 2L_4861953_DEL [dm6]	GG	G	8.197e^-6	0.223	INTRON pog
2L	4835148	2L_4835148_SNP [dm3] 2L_4835148_SNP [dm6]	A	T	8.573e^-6	0.225	UTR_5_PRIME Ir25a UPSTREAM Ir25a DOWNSTREAM tank INTRON Ir25a
2L	4835158	2L_4835158_SNP [dm3] 2L_4835158_SNP [dm6]	T	C	8.573e^-6	0.225	UTR_5_PRIME Ir25a UPSTREAM Ir25a DOWNSTREAM tank INTRON Ir25a
3L	10478277	3L_10478277_SNP [dm3] 3L_10485177_SNP [dm6]	G	A	8.632e^-6	0.225	INTRON A2bp1
2L	12554476	2L_12554476_SNP [dm3] 2L_12554476_SNP [dm6]	T	C	8.892e^-6	0.227	INTERGENIC
3R	4119976	3R_4119976_SNP [dm3] 3R_8294254_SNP [dm6]	C	T	8.970e^-6	0.227	SYNONYMOUS_CODING CG9626 DOWNSTREAM CG31463	TF binding site mE1_TFBS_chinmo
2L	3572554	2L_3572554_SNP [dm3] 2L_3572554_SNP [dm6]	C	T	9.159e^-6	0.228	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4834150	2L_4834150_SNP [dm3] 2L_4834150_SNP [dm6]	C	T	9.672e^-6	0.234	SYNONYMOUS_CODING Ir25a
2L	15376566	2L_15376566_SNP [dm3] 2L_15376566_SNP [dm6]	A	T	9.789e^-6	0.234	INTERGENIC
2L	2098204	2L_2098204_SNP [dm3] 2L_2098204_SNP [dm6]	G	T	1.009e^-5	0.234	INTRON dpr3
2L	2098744	2L_2098744_SNP [dm3] 2L_2098744_SNP [dm6]	C	T	1.009e^-5	0.234	INTRON dpr3
2L	2628627	2L_2628627_SNP [dm3] 2L_2628627_SNP [dm6]	A	G	1.017e^-5	0.234	UPSTREAM CR45705 INTERGENIC
2L	2628645	2L_2628645_SNP [dm3] 2L_2628645_SNP [dm6]	C	G	1.017e^-5	0.234	UPSTREAM CR45705 INTERGENIC
2L	4831004	2L_4831004_SNP [dm3] 2L_4831004_SNP [dm6]	A	G	1.047e^-5	0.238	SYNONYMOUS_CODING Ir25a UPSTREAM mir-4912 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	27119783	3R_27119783_SNP [dm3] 3R_31294061_SNP [dm6]	T	C	1.061e^-5	0.238	INTERGENIC
2L	3482882	2L_3482882_SNP [dm3] 2L_3482882_SNP [dm6]	G	A	1.070e^-5	0.238	INTRON CG15414
3L	7826559	3L_7826559_SNP [dm3] 3L_7833459_SNP [dm6]	T	A	1.118e^-5	0.241	UPSTREAM Pdp1 INTRON Pdp1
2L	2735485	2L_2735485_SNP [dm3] 2L_2735485_SNP [dm6]	C	A	1.126e^-5	0.241	UPSTREAM CG31689 INTRON CG31689
2L	3015610	2L_3015610_SNP [dm3] 2L_3015610_SNP [dm6]	C	G	1.136e^-5	0.241	UTR_3_PRIME CG17265 DOWNSTREAM CG17224	TF binding site BDTNP1_TFBS_twi
2L	15376594	2L_15376594_DEL [dm3] 2L_15376594_DEL [dm6]	ACCTTTATTC	A	1.139e^-5	0.241	INTERGENIC
3L	2145586	3L_2145586_SNP [dm3] 3L_2145586_SNP [dm6]	G	C	1.162e^-5	0.241	INTRON zormin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	996425	2L_996425_SNP [dm3] 2L_996425_SNP [dm6]	G	T	1.179e^-5	0.241	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	18001694	3R_18001694_SNP [dm3] 3R_22175972_SNP [dm6]	G	T	1.185e^-5	0.241	INTRON SKIP
2L	851442	2L_851442_SNP [dm3] 2L_851442_SNP [dm6]	C	T	1.190e^-5	0.241	UTR_3_PRIME CG4291 UPSTREAM drongo DOWNSTREAM CR44060	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h
3R	18001701	3R_18001701_SNP [dm3] 3R_22175979_SNP [dm6]	C	T	1.208e^-5	0.242	INTRON SKIP
2R	19004888	2R_19004888_SNP [dm3] 2R_23117365_SNP [dm6]	T	G	1.239e^-5	0.244	INTERGENIC
3R	20444019	3R_20444019_SNP [dm3] 3R_24618297_SNP [dm6]	G	T	1.244e^-5	0.244	SYNONYMOUS_CODING mld	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	833363	2L_833363_SNP [dm3] 2L_833363_SNP [dm6]	C	T	1.266e^-5	0.245	DOWNSTREAM drongo & 1 other INTERGENIC
2L	7059241	2L_7059241_SNP [dm3] 2L_7059241_SNP [dm6]	C	G	1.383e^-5	0.261	NON_SYNONYMOUS_CODING Mnn1 UTR_3_PRIME CG31907 DOWNSTREAM CG31907 INTRON Mnn1	TF binding site mE1_TFBS_cad
2L	13718084	2L_13718084_SNP [dm3] 2L_13718084_SNP [dm6]	G	A	1.387e^-5	0.261	UPSTREAM CG31814 INTERGENIC
3R	27137723	3R_27137723_SNP [dm3] 3R_31312001_SNP [dm6]	T	C	1.397e^-5	0.261	INTRON CG34347
2L	2827343	2L_2827343_SNP [dm3] 2L_2827343_SNP [dm6]	G	A	1.403e^-5	0.261	INTRON Duox
2L	9973443	2L_9973443_SNP [dm3] 2L_9973443_SNP [dm6]	T	A	1.446e^-5	0.266	INTERGENIC	TF binding site mE1_TFBS_Kr
X	2345062	X_2345062_SNP [dm3] X_2451029_SNP [dm6]	G	A	1.467e^-5	0.267	SYNONYMOUS_CODING boi DOWNSTREAM z	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12759023	2L_12759023_SNP [dm3] 2L_12759023_SNP [dm6]	T	C	1.502e^-5	0.269	INTERGENIC
2L	1101061	2L_1101061_SNP [dm3] 2L_1101061_SNP [dm6]	G	A	1.516e^-5	0.269	INTRON CG4629
3R	25053814	3R_25053814_SNP [dm3] 3R_29228092_SNP [dm6]	C	A	1.524e^-5	0.269	UPSTREAM CG14507 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	6976970	3L_6976970_SNP [dm3] 3L_6983870_SNP [dm6]	C	A	1.543e^-5	0.27	INTRON CG32388 & 1 other	TF binding site mE1_TFBS_sens
2L	3442054	2L_3442054_INS [dm3] 2L_3442054_INS [dm6]	A	AG	1.574e^-5	0.272	INTERGENIC	TF binding site mE1_TFBS_inv
2L	13224076	2L_13224076_SNP [dm3] 2L_13224076_SNP [dm6]	G	A	1.586e^-5	0.272	SYNONYMOUS_CODING CG16812 DOWNSTREAM CG15480	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	6956287	3L_6956287_SNP [dm3] 3L_6963187_SNP [dm6]	T	C	1.612e^-5	0.274	INTRON sgl	TF binding site BDTNP1_TFBS_dl
2L	12957127	2L_12957127_SNP [dm3] 2L_12957127_SNP [dm6]	T	C	1.635e^-5	0.274	INTERGENIC
3R	26036249	3R_26036249_SNP [dm3] 3R_30210527_SNP [dm6]	G	C	1.656e^-5	0.274	UPSTREAM CecA1 & 1 other DOWNSTREAM Anp INTERGENIC	regulatory region REDfly_CRMs
2R	9709385	2R_9709385_SNP [dm3] 2R_13821880_SNP [dm6]	T	G	1.694e^-5	0.274	UTR_5_PRIME fl_2_d INTRON fl_2_d
2L	996207	2L_996207_DEL [dm3] 2L_996207_DEL [dm6]	CC	T	1.703e^-5	0.274	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	986322	2L_986322_SNP [dm3] 2L_986322_SNP [dm6]	G	T	1.759e^-5	0.274	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	5911122	3L_5911122_SNP [dm3] 3L_5918022_SNP [dm6]	G	A	1.771e^-5	0.274	SYNONYMOUS_CODING CG10483 UPSTREAM CR45167 DOWNSTREAM CG13288
3L	9357734	3L_9357734_SNP [dm3] 3L_9364634_SNP [dm6]	A	G	1.783e^-5	0.274	NON_SYNONYMOUS_CODING CG4447 INTRON Klp67A	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	23758000	3R_23758000_SNP [dm3] 3R_27932278_SNP [dm6]	G	C	1.798e^-5	0.274	SYNONYMOUS_CODING mino DOWNSTREAM Mes-4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12490319	2L_12490319_SNP [dm3] 2L_12490319_SNP [dm6]	T	C	1.799e^-5	0.274	INTRON bun
2L	4830810	2L_4830810_SNP [dm3] 2L_4830810_SNP [dm6]	C	T	1.832e^-5	0.274	UPSTREAM mir-4912 & 1 other DOWNSTREAM Ir25a INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2L	13479421	2L_13479421_SNP [dm3] 2L_13479421_SNP [dm6]	C	T	1.832e^-5	0.274	INTRON CG42784
2L	12490318	2L_12490318_SNP [dm3] 2L_12490318_SNP [dm6]	G	A	1.854e^-5	0.274	INTRON bun
2L	759257	2L_759257_SNP [dm3] 2L_759257_SNP [dm6]	G	A	1.856e^-5	0.274	SYNONYMOUS_CODING GABA-B-R3 UTR_3_PRIME GABA-B-R3
3R	15232951	3R_15232951_SNP [dm3] 3R_19407229_SNP [dm6]	T	A	1.872e^-5	0.274	DOWNSTREAM CG5316 INTERGENIC
3L	11539460	3L_11539460_SNP [dm3] 3L_11546360_SNP [dm6]	C	T	1.873e^-5	0.274	INTRON Mob2
2L	5152085	2L_5152085_DEL [dm3] 2L_5152085_DEL [dm6]	CAGCAAC	C	1.898e^-5	0.274	UTR_5_PRIME Msp300 INTRON Msp300	TF binding site mE1_TFBS_inv
3R	5045868	3R_5045868_DEL [dm3] 3R_9220146_DEL [dm6]	AGAATAA	A	1.899e^-5	0.274	INTRON pum	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	7059195	2L_7059195_SNP [dm3] 2L_7059195_SNP [dm6]	G	C	1.906e^-5	0.274	NON_SYNONYMOUS_CODING Mnn1 DOWNSTREAM CG31907	TF binding site mE1_TFBS_cad
X	8094070	X_8094070_SNP [dm3] X_8200037_SNP [dm6]	T	C	1.915e^-5	0.274	INTRON sdt
2L	3620609	2L_3620609_SNP [dm3] 2L_3620609_SNP [dm6]	A	T	1.939e^-5	0.274	SYNONYMOUS_CODING Dot DOWNSTREAM CG15418
2R	9704862	2R_9704862_SNP [dm3] 2R_13817357_SNP [dm6]	A	G	1.940e^-5	0.274	SYNONYMOUS_CODING stj	TF binding site BDTNP1_TFBS_twi
3L	5206340	3L_5206340_SNP [dm3] 3L_5213240_SNP [dm6]	A	C	1.942e^-5	0.274	INTRON shep
2R	7913943	2R_7913943_SNP [dm3] 2R_12026438_SNP [dm6]	G	A	2.003e^-5	0.278	SYNONYMOUS_CODING Mppe	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3486376	2L_3486376_SNP [dm3] 2L_3486376_SNP [dm6]	A	G	2.042e^-5	0.278	INTRON CG15414
2R	18440073	2R_18440073_SNP [dm3] 2R_22552568_SNP [dm6]	A	T	2.043e^-5	0.278	DOWNSTREAM CG6018 INTRON px
X	16670721	X_16670721_SNP [dm3] X_16776688_SNP [dm6]	G	A	2.052e^-5	0.278	INTRON if	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	16670724	X_16670724_SNP [dm3] X_16776691_SNP [dm6]	T	C	2.052e^-5	0.278	INTRON if	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	2412764	3L_2412764_DEL [dm3] 3L_2412764_DEL [dm6]	TA	T	2.060e^-5	0.278	INTRON CG45186
3L	12019060	3L_12019060_SNP [dm3] 3L_12025960_SNP [dm6]	C	T	2.133e^-5	0.285	INTRON rols
X	11050589	X_11050589_SNP [dm3] X_11156556_SNP [dm6]	A	G	2.175e^-5	0.285	DOWNSTREAM CG32668 INTRON Dlic	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	985221	2L_985221_SNP [dm3] 2L_985221_SNP [dm6]	C	T	2.187e^-5	0.285	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	22432965	3L_22432965_SNP [dm3] 3L_22439865_SNP [dm6]	G	T	2.190e^-5	0.285	INTERGENIC
3R	26062382	3R_26062382_SNP [dm3] 3R_30236660_SNP [dm6]	G	C	2.218e^-5	0.285	DOWNSTREAM CG43448 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	17164192	3L_17164192_SNP [dm3] 3L_17171092_SNP [dm6]	C	T	2.232e^-5	0.285	INTRON Rbp6
2L	6080146	2L_6080146_SNP [dm3] 2L_6080146_SNP [dm6]	T	C	2.256e^-5	0.285	DOWNSTREAM CR9162 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	10946563	3R_10946563_SNP [dm3] 3R_15120841_SNP [dm6]	T	A	2.265e^-5	0.285	INTRON CG42788
2L	996279	2L_996279_SNP [dm3] 2L_996279_SNP [dm6]	C	T	2.281e^-5	0.285	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	559630	X_559630_INS [dm3] X_665597_INS [dm6]	T	TGAATCTC	2.282e^-5	0.285	INTERGENIC	transposable element FlyBase
2L	1021309	2L_1021309_SNP [dm3] 2L_1021309_SNP [dm6]	C	G	2.335e^-5	0.285	INTRON IA-2
2L	955148	2L_955148_SNP [dm3] 2L_955148_SNP [dm6]	C	G	2.335e^-5	0.285	INTRON CG4341
2L	9088828	2L_9088828_SNP [dm3] 2L_9088828_SNP [dm6]	C	T	2.338e^-5	0.285	SYNONYMOUS_CODING Toll-4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	2817498	2L_2817498_SNP [dm3] 2L_2817498_SNP [dm6]	A	G	2.344e^-5	0.285	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7068369	2L_7068369_SNP [dm3] 2L_7068369_SNP [dm6]	T	A	2.360e^-5	0.285	SYNONYMOUS_CODING CG11289	TF binding site mE1_TFBS_sens
2L	3492177	2L_3492177_INS [dm3] 2L_3492177_INS [dm6]	G	GAAAGAAAA	2.365e^-5	0.285	INTERGENIC	TF binding site mE1_TFBS_inv
2L	12758994	2L_12758994_SNP [dm3] 2L_12758994_SNP [dm6]	G	T	2.405e^-5	0.288	INTERGENIC
2L	975222	2L_975222_SNP [dm3] 2L_975222_SNP [dm6]	G	C	2.438e^-5	0.289	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	685180	2L_685180_SNP [dm3] 2L_685180_SNP [dm6]	T	C	2.450e^-5	0.289	INTRON ds	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9973435	2L_9973435_MNP [dm3] 2L_9973435_MNP [dm6]	CTT	TAA	2.459e^-5	0.289	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	20308983	3R_20308983_SNP [dm3] 3R_24483261_SNP [dm6]	C	T	2.523e^-5	0.293	INTERGENIC
3L	4840210	3L_4840210_SNP [dm3] 3L_4840210_SNP [dm6]	C	T	2.564e^-5	0.293	UPSTREAM CG13707 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	17683697	3R_17683697_DEL [dm3] 3R_21857975_DEL [dm6]	GGATGG	G	2.577e^-5	0.293	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	27125287	3R_27125287_SNP [dm3] 3R_31299565_SNP [dm6]	C	T	2.580e^-5	0.293	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	787020	2L_787020_SNP [dm3] 2L_787020_SNP [dm6]	G	A	2.590e^-5	0.293	SYNONYMOUS_CODING Pkg21D UTR_3_PRIME CG3544 DOWNSTREAM CG3544	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10497726	2L_10497726_SNP [dm3] 2L_10497726_SNP [dm6]	T	C	2.594e^-5	0.293	INTRON Myo31DF
3R	23196129	3R_23196129_SNP [dm3] 3R_27370407_SNP [dm6]	C	G	2.615e^-5	0.294	UPSTREAM CR43476 INTRON CG42534	TF binding site mE1_TFBS_chinmo
2L	4638674	2L_4638674_SNP [dm3] 2L_4638674_SNP [dm6]	G	T	2.680e^-5	0.299	INTERGENIC
3L	5340071	3L_5340071_SNP [dm3] 3L_5346971_SNP [dm6]	C	G	2.694e^-5	0.299	INTRON lama
2L	4727677	2L_4727677_SNP [dm3] 2L_4727677_SNP [dm6]	G	T	2.706e^-5	0.299	INTERGENIC
3R	22094093	3R_22094093_SNP [dm3] 3R_26268371_SNP [dm6]	T	A	2.774e^-5	0.304	SPLICE_SITE_REGION CG6154 INTRON CG6154
3R	27111773	3R_27111773_SNP [dm3] 3R_31286051_SNP [dm6]	A	C	2.812e^-5	0.307	INTERGENIC
2L	2998925	2L_2998925_SNP [dm3] 2L_2998925_SNP [dm6]	T	C	2.858e^-5	0.31	UPSTREAM CG17265 DOWNSTREAM CG3558 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h
2L	2638381	2L_2638381_SNP [dm3] 2L_2638381_SNP [dm6]	C	T	2.918e^-5	0.314	INTERGENIC
2L	2074486	2L_2074486_SNP [dm3] 2L_2074486_SNP [dm6]	C	T	2.932e^-5	0.314	INTRON dpr3
2L	3522135	2L_3522135_SNP [dm3] 2L_3522135_SNP [dm6]	C	T	2.968e^-5	0.314	SYNONYMOUS_CODING CG8851 DOWNSTREAM Sr-CIV	TF binding site mE1_TFBS_cad
2L	11103310	2L_11103310_SNP [dm3] 2L_11103310_SNP [dm6]	G	A	2.969e^-5	0.314	INTRON Reps
2L	1009007	2L_1009007_SNP [dm3] 2L_1009007_SNP [dm6]	C	T	2.991e^-5	0.314	UTR_3_PRIME IA-2
3L	5206309	3L_5206309_SNP [dm3] 3L_5213209_SNP [dm6]	A	C	3.019e^-5	0.314	INTRON shep	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25053805	3R_25053805_SNP [dm3] 3R_29228083_SNP [dm6]	T	C	3.026e^-5	0.314	UPSTREAM CG14507 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	23573898	3R_23573898_SNP [dm3] 3R_27748176_SNP [dm6]	A	G	3.034e^-5	0.314	UTR_3_PRIME Ets98B DOWNSTREAM Ets98B
2L	5609491	2L_5609491_INS [dm3] 2L_5609491_INS [dm6]	A	AA	3.062e^-5	0.315	INTRON CG14010
3L	6976991	3L_6976991_SNP [dm3] 3L_6983891_SNP [dm6]	G	T	3.114e^-5	0.316	SPLICE_SITE_REGION CG32388 & 1 other INTRON CG32388 & 1 other	TF binding site mE1_TFBS_sens
2L	12965407	2L_12965407_SNP [dm3] 2L_12965407_SNP [dm6]	G	C	3.170e^-5	0.316	INTERGENIC
X	4730339	X_4730339_SNP [dm3] X_4836306_SNP [dm6]	A	C	3.178e^-5	0.316	INTERGENIC
2L	1008597	2L_1008597_SNP [dm3] 2L_1008597_SNP [dm6]	C	G	3.199e^-5	0.316	UTR_3_PRIME IA-2	TF binding site BDTNP1_TFBS_dl
3R	20830619	3R_20830619_SNP [dm3] 3R_25004897_SNP [dm6]	A	G	3.201e^-5	0.316	INTRON tnc
3L	16896235	3L_16896235_SNP [dm3] 3L_16903135_SNP [dm6]	A	G	3.221e^-5	0.316	NON_SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site mE1_TFBS_chinmo
3L	7826504	3L_7826504_SNP [dm3] 3L_7833404_SNP [dm6]	T	G	3.241e^-5	0.316	UPSTREAM Pdp1 INTRON Pdp1
3R	21410608	3R_21410608_SNP [dm3] 3R_25584886_SNP [dm6]	T	G	3.244e^-5	0.316	INTRON msi	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6953170	3L_6953170_SNP [dm3] 3L_6960070_SNP [dm6]	T	C	3.245e^-5	0.316	UTR_3_PRIME sgl DOWNSTREAM Surf1
3L	20176231	3L_20176231_SNP [dm3] 3L_20183131_SNP [dm6]	T	A	3.261e^-5	0.316	INTRON CG42674	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12726718	2L_12726718_SNP [dm3] 2L_12726718_SNP [dm6]	G	C	3.270e^-5	0.316	INTRON MRP	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	2077174	2L_2077174_SNP [dm3] 2L_2077174_SNP [dm6]	C	T	3.279e^-5	0.316	INTRON dpr3
2R	9704679	2R_9704679_SNP [dm3] 2R_13817174_SNP [dm6]	T	C	3.355e^-5	0.318	SYNONYMOUS_CODING stj	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16651732	X_16651732_SNP [dm3] X_16757699_SNP [dm6]	G	T	3.360e^-5	0.318	INTRON if
2L	2880060	2L_2880060_SNP [dm3] 2L_2880060_SNP [dm6]	C	T	3.394e^-5	0.318	SYNONYMOUS_CODING betaggt-II DOWNSTREAM NTPase	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2L	976015	2L_976015_SNP [dm3] 2L_976015_SNP [dm6]	G	T	3.420e^-5	0.318	INTERGENIC	TF binding site BDTNP1_TFBS_hb
2L	3505092	2L_3505092_SNP [dm3] 2L_3505092_SNP [dm6]	G	A	3.463e^-5	0.318	INTRON tim	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5898066	3L_5898066_SNP [dm3] 3L_5904966_SNP [dm6]	C	T	3.464e^-5	0.318	SYNONYMOUS_CODING CG10486 UTR_3_PRIME CG10486 UPSTREAM CG32413
2L	2330287	2L_2330287_SNP [dm3] 2L_2330287_SNP [dm6]	T	A	3.509e^-5	0.318	INTRON CG9967 & 1 other
3R	21003745	3R_21003745_SNP [dm3] 3R_25178023_SNP [dm6]	G	C	3.568e^-5	0.318	INTRON lobo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12844010	2L_12844010_SNP [dm3] 2L_12844010_SNP [dm6]	T	A	3.593e^-5	0.318	INTERGENIC
2L	12844012	2L_12844012_SNP [dm3] 2L_12844012_SNP [dm6]	T	A	3.593e^-5	0.318	INTERGENIC
2L	12844013	2L_12844013_DEL [dm3] 2L_12844013_DEL [dm6]	TTT	T	3.593e^-5	0.318	INTERGENIC
2L	1008600	2L_1008600_SNP [dm3] 2L_1008600_SNP [dm6]	G	A	3.613e^-5	0.318	UTR_3_PRIME IA-2	TF binding site BDTNP1_TFBS_dl
2L	2412274	2L_2412274_SNP [dm3] 2L_2412274_SNP [dm6]	T	C	3.618e^-5	0.318	INTRON CG18641	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12844063	2L_12844063_SNP [dm3] 2L_12844063_SNP [dm6]	T	A	3.624e^-5	0.318	INTERGENIC
3R	23856150	3R_23856150_SNP [dm3] 3R_28030428_SNP [dm6]	A	C	3.662e^-5	0.318	INTRON CG34362
2L	3546346	2L_3546346_SNP [dm3] 2L_3546346_SNP [dm6]	A	G	3.665e^-5	0.318	INTRON drm	TF binding site BDTNP1_TFBS_dl
3R	25059373	3R_25059373_SNP [dm3] 3R_29233651_SNP [dm6]	T	C	3.667e^-5	0.318	SYNONYMOUS_CODING CG15817	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	9357498	3L_9357498_SNP [dm3] 3L_9364398_SNP [dm6]	T	C	3.674e^-5	0.318	UTR_5_PRIME CG4447 INTRON Klp67A	TF binding site mE1_TFBS_cad
3L	4840509	3L_4840509_SNP [dm3] 3L_4840509_SNP [dm6]	C	A	3.703e^-5	0.318	UPSTREAM CG13707 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	3919826	2L_3919826_INS [dm3] 2L_3919826_INS [dm6]	T	TAAATTT	3.713e^-5	0.318	INTRON fred
3R	21409637	3R_21409637_SNP [dm3] 3R_25583915_SNP [dm6]	T	C	3.713e^-5	0.318	UPSTREAM CG4582 INTRON msi
3R	22566158	3R_22566158_SNP [dm3] 3R_26740436_SNP [dm6]	C	T	3.738e^-5	0.318	INTERGENIC
2L	2074631	2L_2074631_SNP [dm3] 2L_2074631_SNP [dm6]	A	T	3.744e^-5	0.318	INTRON dpr3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	9418330	2L_9418330_SNP [dm3] 2L_9418330_SNP [dm6]	A	T	3.757e^-5	0.318	INTRON Mco1
2L	9418332	2L_9418332_SNP [dm3] 2L_9418332_SNP [dm6]	C	G	3.757e^-5	0.318	INTRON Mco1
2L	3438723	2L_3438723_SNP [dm3] 2L_3438723_SNP [dm6]	G	T	3.763e^-5	0.318	INTERGENIC
2L	3647026	2L_3647026_SNP [dm3] 2L_3647026_SNP [dm6]	C	T	3.835e^-5	0.318	UPSTREAM for INTRON for
2R	19116650	2R_19116650_SNP [dm3] 2R_23229127_SNP [dm6]	A	T	3.858e^-5	0.318	INTERGENIC
3R	23181399	3R_23181399_DEL [dm3] 3R_27355677_DEL [dm6]	GC	A	3.938e^-5	0.318	INTRON CG42534
2L	6070718	2L_6070718_SNP [dm3] 2L_6070718_SNP [dm6]	G	A	3.990e^-5	0.318	UPSTREAM Kr-h2 & 1 other DOWNSTREAM CG13993 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA
3R	20328185	3R_20328185_SNP [dm3] 3R_24502463_SNP [dm6]	G	C	4.000e^-5	0.318	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	23181443	3R_23181443_SNP [dm3] 3R_27355721_SNP [dm6]	A	C	4.006e^-5	0.318	INTRON CG42534
3R	23181395	3R_23181395_SNP [dm3] 3R_27355673_SNP [dm6]	A	C	4.012e^-5	0.318	INTRON CG42534
2L	12566401	2L_12566401_SNP [dm3] 2L_12566401_SNP [dm6]	T	A	4.072e^-5	0.318	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	2625695	2L_2625695_SNP [dm3] 2L_2625695_SNP [dm6]	C	A	4.080e^-5	0.318	EXON CR45705
3L	13510715	3L_13510715_SNP [dm3] 3L_13517615_SNP [dm6]	T	G	4.141e^-5	0.318	SYNONYMOUS_CODING CG10710	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9218314	3L_9218314_SNP [dm3] 3L_9225214_SNP [dm6]	G	A	4.163e^-5	0.318	INTERGENIC
2L	10527465	2L_10527465_SNP [dm3] 2L_10527465_SNP [dm6]	A	T	4.169e^-5	0.318	UPSTREAM Lip4 INTERGENIC
2L	3481521	2L_3481521_SNP [dm3] 2L_3481521_SNP [dm6]	T	G	4.257e^-5	0.318	SYNONYMOUS_CODING CG15414	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16910870	2R_16910870_SNP [dm3] 2R_21023365_SNP [dm6]	T	G	4.296e^-5	0.318	INTRON RIC-3
X	523562	X_523562_SNP [dm3] X_629529_SNP [dm6]	G	C	4.314e^-5	0.318	UPSTREAM l_1_1Bi & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2L	12843897	2L_12843897_SNP [dm3] 2L_12843897_SNP [dm6]	G	A	4.389e^-5	0.318	INTERGENIC
2L	12843903	2L_12843903_SNP [dm3] 2L_12843903_SNP [dm6]	C	T	4.389e^-5	0.318	INTERGENIC
2L	12843914	2L_12843914_SNP [dm3] 2L_12843914_SNP [dm6]	T	A	4.389e^-5	0.318	INTERGENIC
2L	12843917	2L_12843917_SNP [dm3] 2L_12843917_SNP [dm6]	G	C	4.389e^-5	0.318	INTERGENIC
2L	12843918	2L_12843918_SNP [dm3] 2L_12843918_SNP [dm6]	G	A	4.389e^-5	0.318	INTERGENIC
2L	12843924	2L_12843924_SNP [dm3] 2L_12843924_SNP [dm6]	G	A	4.389e^-5	0.318	INTERGENIC
2L	12843926	2L_12843926_DEL [dm3] 2L_12843926_DEL [dm6]	TACAT	T	4.389e^-5	0.318	INTERGENIC
2L	12843951	2L_12843951_SNP [dm3] 2L_12843951_SNP [dm6]	T	A	4.389e^-5	0.318	INTERGENIC
2L	12843982	2L_12843982_SNP [dm3] 2L_12843982_SNP [dm6]	C	T	4.389e^-5	0.318	INTERGENIC
2L	12843987	2L_12843987_SNP [dm3] 2L_12843987_SNP [dm6]	A	T	4.389e^-5	0.318	INTERGENIC
2L	12843989	2L_12843989_SNP [dm3] 2L_12843989_SNP [dm6]	G	C	4.389e^-5	0.318	INTERGENIC
2L	12844068	2L_12844068_SNP [dm3] 2L_12844068_SNP [dm6]	C	T	4.389e^-5	0.318	INTERGENIC
2L	12843902	2L_12843902_SNP [dm3] 2L_12843902_SNP [dm6]	G	A	4.421e^-5	0.318	INTERGENIC
2L	2817513	2L_2817513_SNP [dm3] 2L_2817513_SNP [dm6]	G	A	4.426e^-5	0.318	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16199736	2R_16199736_SNP [dm3] 2R_20312231_SNP [dm6]	T	C	4.435e^-5	0.318	INTRON CG13868	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2626814	2L_2626814_SNP [dm3] 2L_2626814_SNP [dm6]	T	A	4.501e^-5	0.318	EXON CR45705
2L	2827074	2L_2827074_SNP [dm3] 2L_2827074_SNP [dm6]	A	G	4.508e^-5	0.318	INTRON Duox
2L	742316	2L_742316_SNP [dm3] 2L_742316_SNP [dm6]	G	T	4.518e^-5	0.318	UPSTREAM Eaat2 INTRON Eaat2
2L	850917	2L_850917_INS [dm3] 2L_850917_INS [dm6]	G	GTTTG	4.518e^-5	0.318	UTR_5_PRIME drongo DOWNSTREAM CG4291 EXON CR44060	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	851158	2L_851158_SNP [dm3] 2L_851158_SNP [dm6]	G	T	4.518e^-5	0.318	UPSTREAM drongo DOWNSTREAM CG4291 EXON CR44060	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h
2L	851299	2L_851299_SNP [dm3] 2L_851299_SNP [dm6]	C	T	4.518e^-5	0.318	UTR_3_PRIME CG4291 UPSTREAM drongo DOWNSTREAM CG4291 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h
2L	851696	2L_851696_SNP [dm3] 2L_851696_SNP [dm6]	G	C	4.518e^-5	0.318	UPSTREAM drongo DOWNSTREAM CR44060 INTRON CG4291	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	851805	2L_851805_SNP [dm3] 2L_851805_SNP [dm6]	T	C	4.518e^-5	0.318	NON_SYNONYMOUS_CODING CG4291 UPSTREAM drongo & 1 other DOWNSTREAM CR44060	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	852457	2L_852457_SNP [dm3] 2L_852457_SNP [dm6]	G	A	4.518e^-5	0.318	UPSTREAM kraken INTRON CG4291	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	853504	2L_853504_SNP [dm3] 2L_853504_SNP [dm6]	A	G	4.518e^-5	0.318	UPSTREAM CG4291 INTRON kraken	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	854419	2L_854419_SNP [dm3] 2L_854419_SNP [dm6]	T	G	4.518e^-5	0.318	UTR_3_PRIME kraken UPSTREAM CG13949	TF binding site mE1_TFBS_cad
3R	21000761	3R_21000761_SNP [dm3] 3R_25175039_SNP [dm6]	C	T	4.542e^-5	0.318	INTRON lobo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	21107517	3L_21107517_SNP [dm3] 3L_21114417_SNP [dm6]	A	C	4.542e^-5	0.318	INTRON ko	regulatory region REDfly_CRMs
3R	24431869	3R_24431869_SNP [dm3] 3R_28606147_SNP [dm6]	C	A	4.568e^-5	0.318	UTR_5_PRIME CG9986 DOWNSTREAM Hrb98DE	TF binding site BDTNP1_TFBS_dl
2L	3438795	2L_3438795_SNP [dm3] 2L_3438795_SNP [dm6]	G	T	4.577e^-5	0.318	INTERGENIC
2L	2735479	2L_2735479_SNP [dm3] 2L_2735479_SNP [dm6]	T	A	4.588e^-5	0.318	UPSTREAM CG31689 INTRON CG31689
2L	1125632	2L_1125632_SNP [dm3] 2L_1125632_SNP [dm6]	A	T	4.603e^-5	0.318	INTRON Pino
2L	2750284	2L_2750284_SNP [dm3] 2L_2750284_SNP [dm6]	C	A	4.617e^-5	0.318	UPSTREAM Pgk INTRON Pgk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9765982	2L_9765982_SNP [dm3] 2L_9765982_SNP [dm6]	G	T	4.622e^-5	0.318	SYNONYMOUS_CODING ppk18 DOWNSTREAM und
3R	17518361	3R_17518361_SNP [dm3] 3R_21692639_SNP [dm6]	A	G	4.625e^-5	0.318	INTRON CG31176
2L	15167256	2L_15167256_SNP [dm3] 2L_15167256_SNP [dm6]	G	A	4.646e^-5	0.318	NON_SYNONYMOUS_CODING CG4168
2L	13116842	2L_13116842_SNP [dm3] 2L_13116842_SNP [dm6]	A	C	4.676e^-5	0.319	INTERGENIC
3R	27137789	3R_27137789_SNP [dm3] 3R_31312067_SNP [dm6]	T	A	4.697e^-5	0.319	INTRON CG34347
2L	13943218	2L_13943218_SNP [dm3] 2L_13943218_SNP [dm6]	G	T	4.840e^-5	0.325	INTRON Ance-3
3L	4842346	3L_4842346_SNP [dm3] 3L_4842346_SNP [dm6]	C	A	4.842e^-5	0.325	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9347789	3L_9347789_SNP [dm3] 3L_9354689_SNP [dm6]	T	C	4.846e^-5	0.325	SYNONYMOUS_CODING CG32040 INTRON UGP
2L	2817492	2L_2817492_SNP [dm3] 2L_2817492_SNP [dm6]	A	G	4.855e^-5	0.325	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4840522	3L_4840522_SNP [dm3] 3L_4840522_SNP [dm6]	G	C	4.899e^-5	0.326	UPSTREAM CG13707 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	561268	X_561268_SNP [dm3] X_667235_SNP [dm6]	T	A	4.913e^-5	0.326	INTERGENIC
3R	20311645	3R_20311645_INS [dm3] 3R_24485923_INS [dm6]	T	TAT	4.925e^-5	0.326	UTR_5_PRIME nAChRalpha2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	9780781	X_9780781_SNP [dm3] X_9886748_SNP [dm6]	A	G	4.989e^-5	0.329	INTERGENIC
2R	9704742	2R_9704742_SNP [dm3] 2R_13817237_SNP [dm6]	T	C	5.039e^-5	0.331	SYNONYMOUS_CODING stj	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6806286	3L_6806286_SNP [dm3] 3L_6813186_SNP [dm6]	C	T	5.068e^-5	0.332	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med
2L	5820919	2L_5820919_SNP [dm3] 2L_5820919_SNP [dm6]	G	A	5.124e^-5	0.333	INTERGENIC
3R	13018499	3R_13018499_SNP [dm3] 3R_17192777_SNP [dm6]	T	A	5.126e^-5	0.333	INTRON Mur89F
2L	12490337	2L_12490337_DEL [dm3] 2L_12490337_DEL [dm6]	AAATCTATTCTAAGGGCAGC...	A	5.133e^-5	0.333	INTRON bun
2L	851283	2L_851283_SNP [dm3] 2L_851283_SNP [dm6]	A	T	5.179e^-5	0.334	UTR_3_PRIME CG4291 UPSTREAM drongo DOWNSTREAM CG4291 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h
3L	6952913	3L_6952913_SNP [dm3] 3L_6959813_SNP [dm6]	T	G	5.200e^-5	0.334	UTR_3_PRIME sgl DOWNSTREAM Surf1
3R	23161904	3R_23161904_SNP [dm3] 3R_27336182_SNP [dm6]	G	T	5.250e^-5	0.334	INTERGENIC
X	559628	X_559628_SNP [dm3] X_665595_SNP [dm6]	T	G	5.297e^-5	0.334	INTERGENIC	transposable element FlyBase
3R	23181362	3R_23181362_MNP [dm3] 3R_27355640_MNP [dm6]	CTG	TAA	5.383e^-5	0.334	INTRON CG42534
3R	23181367	3R_23181367_DEL [dm3] 3R_27355645_DEL [dm6]	TGTCCTGAA	T	5.383e^-5	0.334	INTRON CG42534
3R	23181393	3R_23181393_SNP [dm3] 3R_27355671_SNP [dm6]	A	C	5.383e^-5	0.334	INTRON CG42534
3R	23181419	3R_23181419_SNP [dm3] 3R_27355697_SNP [dm6]	T	G	5.383e^-5	0.334	INTRON CG42534
3R	23181433	3R_23181433_SNP [dm3] 3R_27355711_SNP [dm6]	T	C	5.383e^-5	0.334	INTRON CG42534
2L	8099362	2L_8099362_SNP [dm3] 2L_8099362_SNP [dm6]	T	C	5.385e^-5	0.334	INTRON Bsg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	13725819	2L_13725819_SNP [dm3] 2L_13725819_SNP [dm6]	C	T	5.392e^-5	0.334	INTERGENIC
X	561734	X_561734_DEL [dm3] X_667701_DEL [dm6]	GAATTACAAGCTAAACGTGA...	G	5.394e^-5	0.334	INTERGENIC
3L	1250814	3L_1250814_SNP [dm3] 3L_1250814_SNP [dm6]	T	A	5.455e^-5	0.334	UTR_5_PRIME CG9129 DOWNSTREAM Sac1	TF binding site mE1_TFBS_cad
2L	3420886	2L_3420886_SNP [dm3] 2L_3420886_SNP [dm6]	C	A	5.457e^-5	0.334	INTRON pgant2
3R	18590355	3R_18590355_SNP [dm3] 3R_22764633_SNP [dm6]	T	C	5.463e^-5	0.334	SYNONYMOUS_CODING CG4721 UPSTREAM CG4723 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18590361	3R_18590361_SNP [dm3] 3R_22764639_SNP [dm6]	G	A	5.463e^-5	0.334	SYNONYMOUS_CODING CG4721 UPSTREAM CG4723 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	13018514	3R_13018514_SNP [dm3] 3R_17192792_SNP [dm6]	T	G	5.470e^-5	0.334	INTRON Mur89F	TF binding site mE1_TFBS_chinmo
2L	7515491	2L_7515491_SNP [dm3] 2L_7515491_SNP [dm6]	A	G	5.489e^-5	0.334	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da
2L	2739066	2L_2739066_SNP [dm3] 2L_2739066_SNP [dm6]	C	A	5.509e^-5	0.334	UPSTREAM Hrs INTRON CG31689
X	6376406	X_6376406_INS [dm3] X_6482373_INS [dm6]	C	CCTTTC	5.593e^-5	0.338	INTRON CG42340
2L	4831707	2L_4831707_SNP [dm3] 2L_4831707_SNP [dm6]	G	C	5.628e^-5	0.338	SYNONYMOUS_CODING Ir25a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4831737	2L_4831737_SNP [dm3] 2L_4831737_SNP [dm6]	C	T	5.628e^-5	0.338	SYNONYMOUS_CODING Ir25a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	11718518	X_11718518_SNP [dm3] X_11824485_SNP [dm6]	T	G	5.659e^-5	0.338	SPLICE_SITE_REGION rudhira INTRON rudhira	TF binding site mE1_TFBS_cad
2L	3622997	2L_3622997_SNP [dm3] 2L_3622997_SNP [dm6]	G	C	5.678e^-5	0.338	INTRON for
3L	6956305	3L_6956305_SNP [dm3] 3L_6963205_SNP [dm6]	T	A	5.681e^-5	0.338	INTRON sgl	TF binding site BDTNP1_TFBS_dl
2L	2275942	2L_2275942_SNP [dm3] 2L_2275942_SNP [dm6]	C	G	5.714e^-5	0.338	INTRON CR43753 EXON CR43753
2L	4834598	2L_4834598_SNP [dm3] 2L_4834598_SNP [dm6]	G	A	5.719e^-5	0.338	SYNONYMOUS_CODING Ir25a UPSTREAM Ir25a DOWNSTREAM tank INTRON Ir25a
2L	13690716	2L_13690716_SNP [dm3] 2L_13690716_SNP [dm6]	A	G	5.802e^-5	0.342	INTRON CG31814
2L	4831728	2L_4831728_SNP [dm3] 2L_4831728_SNP [dm6]	C	T	5.837e^-5	0.343	SYNONYMOUS_CODING Ir25a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	20396340	3R_20396340_SNP [dm3] 3R_24570618_SNP [dm6]	C	A	5.868e^-5	0.343	INTRON CG13624
3R	19560363	3R_19560363_SNP [dm3] 3R_23734641_SNP [dm6]	G	A	5.882e^-5	0.343	INTRON Hmgcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10277682	3R_10277682_DEL [dm3] 3R_14451960_DEL [dm6]	TT	T	5.890e^-5	0.343	UTR_5_PRIME cv-c
2L	7253205	2L_7253205_SNP [dm3] 2L_7253205_SNP [dm6]	G	C	5.913e^-5	0.343	UPSTREAM CG13786 INTERGENIC
3L	763416	3L_763416_SNP [dm3] 3L_763416_SNP [dm6]	G	C	5.946e^-5	0.344	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	10850259	3L_10850259_SNP [dm3] 3L_10857159_SNP [dm6]	T	C	5.968e^-5	0.344	UPSTREAM tna INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	13262031	3L_13262031_SNP [dm3] 3L_13268931_SNP [dm6]	A	T	6.000e^-5	0.345	INTRON caps
2R	13104813	2R_13104813_SNP [dm3] 2R_17217308_SNP [dm6]	T	C	6.070e^-5	0.347	INTRON mbl
2R	7913970	2R_7913970_SNP [dm3] 2R_12026465_SNP [dm6]	A	G	6.083e^-5	0.347	SYNONYMOUS_CODING Mppe	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	20143202	3L_20143202_SNP [dm3] 3L_20150102_SNP [dm6]	T	C	6.158e^-5	0.348	UTR_3_PRIME CG42674
2L	13725704	2L_13725704_INS [dm3] 2L_13725704_INS [dm6]	G	TTAAATTTAA	6.256e^-5	0.348	INTERGENIC
2L	13725733	2L_13725733_SNP [dm3] 2L_13725733_SNP [dm6]	A	G	6.256e^-5	0.348	INTERGENIC
2L	3461733	2L_3461733_SNP [dm3] 2L_3461733_SNP [dm6]	T	G	6.266e^-5	0.348	DOWNSTREAM msl-2 INTRON CG3246	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	686353	2L_686353_SNP [dm3] 2L_686353_SNP [dm6]	G	C	6.272e^-5	0.348	INTRON ds
2L	787206	2L_787206_SNP [dm3] 2L_787206_SNP [dm6]	A	G	6.272e^-5	0.348	SYNONYMOUS_CODING Pkg21D UTR_3_PRIME CG3544	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	787221	2L_787221_SNP [dm3] 2L_787221_SNP [dm6]	G	C	6.272e^-5	0.348	SYNONYMOUS_CODING Pkg21D UTR_3_PRIME CG3544	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	859546	2L_859546_SNP [dm3] 2L_859546_SNP [dm6]	A	T	6.272e^-5	0.348	UPSTREAM CG13950 INTERGENIC
2L	995179	2L_995179_SNP [dm3] 2L_995179_SNP [dm6]	C	G	6.294e^-5	0.348	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	23920691	3R_23920691_SNP [dm3] 3R_28094969_SNP [dm6]	G	A	6.297e^-5	0.348	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	2098208	2L_2098208_SNP [dm3] 2L_2098208_SNP [dm6]	A	C	6.311e^-5	0.348	INTRON dpr3
X	559663	X_559663_SNP [dm3] X_665630_SNP [dm6]	A	G	6.321e^-5	0.348	INTERGENIC	transposable element FlyBase
X	16651580	X_16651580_SNP [dm3] X_16757547_SNP [dm6]	C	T	6.338e^-5	0.348	INTRON if
3R	23903503	3R_23903503_SNP [dm3] 3R_28077781_SNP [dm6]	C	T	6.377e^-5	0.348	INTRON CG34362
2R	14992533	2R_14992533_SNP [dm3] 2R_19105028_SNP [dm6]	C	G	6.406e^-5	0.348	INTRON 5-HT1A
2L	2918065	2L_2918065_SNP [dm3] 2L_2918065_SNP [dm6]	G	A	6.414e^-5	0.348	INTRON lilli
3R	22379682	3R_22379682_SNP [dm3] 3R_26553960_SNP [dm6]	A	G	6.420e^-5	0.348	INTRON scrib	TF binding site mE1_TFBS_cad
3R	20396217	3R_20396217_INS [dm3] 3R_24570495_INS [dm6]	A	AA	6.514e^-5	0.351	INTRON CG13624
2L	4720717	2L_4720717_SNP [dm3] 2L_4720717_SNP [dm6]	C	T	6.534e^-5	0.351	UTR_3_PRIME CG34351
X	559604	X_559604_SNP [dm3] X_665571_SNP [dm6]	T	C	6.575e^-5	0.351	INTERGENIC	transposable element FlyBase
2R	1868673	2R_1868673_SNP [dm3] 2R_5981168_SNP [dm6]	T	A	6.612e^-5	0.351	UPSTREAM mle & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
3R	23181458	3R_23181458_SNP [dm3] 3R_27355736_SNP [dm6]	T	A	6.663e^-5	0.351	INTRON CG42534
X	8519526	X_8519526_SNP [dm3] X_8625493_SNP [dm6]	G	T	6.669e^-5	0.351	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2L	1821840	2L_1821840_SNP [dm3] 2L_1821840_SNP [dm6]	G	T	6.682e^-5	0.351	SYNONYMOUS_CODING CG31933
3L	6960114	3L_6960114_SNP [dm3] 3L_6967014_SNP [dm6]	T	G	6.698e^-5	0.351	SYNONYMOUS_CODING CG10064	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	20830604	3R_20830604_SNP [dm3] 3R_25004882_SNP [dm6]	T	C	6.701e^-5	0.351	INTRON tnc
2L	1087443	2L_1087443_SNP [dm3] 2L_1087443_SNP [dm6]	C	A	6.710e^-5	0.351	INTRON CG4629
3R	23181460	3R_23181460_SNP [dm3] 3R_27355738_SNP [dm6]	T	C	6.720e^-5	0.351	INTRON CG42534
2L	13095313	2L_13095313_SNP [dm3] 2L_13095313_SNP [dm6]	T	C	6.739e^-5	0.351	INTERGENIC
2L	4715495	2L_4715495_SNP [dm3] 2L_4715495_SNP [dm6]	T	C	6.746e^-5	0.351	INTRON CG34351
2L	2804588	2L_2804588_SNP [dm3] 2L_2804588_SNP [dm6]	C	G	6.746e^-5	0.351	UPSTREAM daw INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25252755	3R_25252755_SNP [dm3] 3R_29427033_SNP [dm6]	T	A	6.883e^-5	0.356	SYNONYMOUS_CODING Ptp99A
3L	21107573	3L_21107573_INS [dm3] 3L_21114473_INS [dm6]	T	TTACACCTATAAGTGAAT...	6.905e^-5	0.356	INTRON ko	regulatory region REDfly_CRMs
3L	9136614	3L_9136614_SNP [dm3] 3L_9143514_SNP [dm6]	C	T	6.938e^-5	0.356	INTRON nwk	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3L	15064111	3L_15064111_SNP [dm3] 3L_15071011_SNP [dm6]	C	A	6.943e^-5	0.356	INTRON cp309
2L	1009043	2L_1009043_SNP [dm3] 2L_1009043_SNP [dm6]	A	G	6.977e^-5	0.356	UTR_3_PRIME IA-2
2L	859540	2L_859540_SNP [dm3] 2L_859540_SNP [dm6]	C	T	7.020e^-5	0.356	UPSTREAM CG13950 INTERGENIC
3L	7594953	3L_7594953_SNP [dm3] 3L_7601853_SNP [dm6]	A	G	7.040e^-5	0.356	INTRON CG33275
X	565250	X_565250_SNP [dm3] X_671217_SNP [dm6]	G	A	7.053e^-5	0.356	INTERGENIC
3R	13980338	3R_13980338_SNP [dm3] 3R_18154616_SNP [dm6]	T	C	7.055e^-5	0.356	DOWNSTREAM CG14316 INTERGENIC
2R	19116651	2R_19116651_SNP [dm3] 2R_23229128_SNP [dm6]	A	G	7.146e^-5	0.356	INTERGENIC
X	15564652	X_15564652_SNP [dm3] X_15670619_SNP [dm6]	C	G	7.170e^-5	0.356	UPSTREAM CG15646 INTRON CG15646	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	16389829	2L_16389829_SNP [dm3] 2L_16389829_SNP [dm6]	A	T	7.177e^-5	0.356	INTERGENIC
3R	27132565	3R_27132565_SNP [dm3] 3R_31306843_SNP [dm6]	G	T	7.183e^-5	0.356	INTERGENIC
2L	4833550	2L_4833550_SNP [dm3] 2L_4833550_SNP [dm6]	A	G	7.187e^-5	0.356	SYNONYMOUS_CODING Ir25a
3L	22433018	3L_22433018_SNP [dm3] 3L_22439918_SNP [dm6]	A	G	7.198e^-5	0.356	INTERGENIC
3R	10545629	3R_10545629_SNP [dm3] 3R_14719907_SNP [dm6]	G	C	7.226e^-5	0.356	INTRON kibra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17930450	2R_17930450_SNP [dm3] 2R_22042945_SNP [dm6]	C	T	7.233e^-5	0.356	UTR_5_PRIME PpD5
2L	3875456	2L_3875456_SNP [dm3] 2L_3875456_SNP [dm6]	G	A	7.247e^-5	0.356	INTRON capu
X	6119236	X_6119236_SNP [dm3] X_6225203_SNP [dm6]	C	T	7.250e^-5	0.356	UPSTREAM sqh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	12566386	2L_12566386_SNP [dm3] 2L_12566386_SNP [dm6]	T	G	7.262e^-5	0.356	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7274171	2L_7274171_SNP [dm3] 2L_7274171_SNP [dm6]	T	C	7.293e^-5	0.356	INTRON Wnt4
2L	2783311	2L_2783311_SNP [dm3] 2L_2783311_SNP [dm6]	G	A	7.298e^-5	0.356	UTR_3_PRIME Syt1 INTRON Syt1
2L	10640376	2L_10640376_SNP [dm3] 2L_10640376_SNP [dm6]	T	C	7.338e^-5	0.356	NON_SYNONYMOUS_CODING CG31872 DOWNSTREAM CR45351
2L	10640843	2L_10640843_SNP [dm3] 2L_10640843_SNP [dm6]	G	A	7.338e^-5	0.356	NON_SYNONYMOUS_CODING CG31872	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18001714	3R_18001714_SNP [dm3] 3R_22175992_SNP [dm6]	T	C	7.354e^-5	0.356	INTRON SKIP
3R	18263516	3R_18263516_SNP [dm3] 3R_22437794_SNP [dm6]	T	C	7.357e^-5	0.356	INTERGENIC
2L	12529025	2L_12529025_SNP [dm3] 2L_12529025_SNP [dm6]	G	C	7.385e^-5	0.357	INTRON bun	TF binding site BDTNP1_TFBS_dl
2L	2881988	2L_2881988_SNP [dm3] 2L_2881988_SNP [dm6]	G	A	7.430e^-5	0.358	SYNONYMOUS_CODING NTPase	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17683710	3R_17683710_SNP [dm3] 3R_21857988_SNP [dm6]	T	A	7.456e^-5	0.358	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23181360	3R_23181360_SNP [dm3] 3R_27355638_SNP [dm6]	A	T	7.524e^-5	0.358	INTRON CG42534
3R	23181366	3R_23181366_SNP [dm3] 3R_27355644_SNP [dm6]	G	T	7.524e^-5	0.358	INTRON CG42534
3R	23181408	3R_23181408_SNP [dm3] 3R_27355686_SNP [dm6]	C	A	7.524e^-5	0.358	INTRON CG42534
2L	4482612	2L_4482612_SNP [dm3] 2L_4482612_SNP [dm6]	G	C	7.539e^-5	0.358	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12314084	2R_12314084_SNP [dm3] 2R_16426579_SNP [dm6]	C	T	7.548e^-5	0.358	SYNONYMOUS_CODING Sema-2b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5145567	2L_5145567_SNP [dm3] 2L_5145567_SNP [dm6]	C	G	7.669e^-5	0.36	UPSTREAM Msp300 INTRON Msp300	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	20830615	3R_20830615_SNP [dm3] 3R_25004893_SNP [dm6]	C	G	7.678e^-5	0.36	INTRON tnc
3L	8300870	3L_8300870_SNP [dm3] 3L_8307770_SNP [dm6]	T	A	7.700e^-5	0.36	UPSTREAM Gr66a INTRON BI-1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2R	16908652	2R_16908652_SNP [dm3] 2R_21021147_SNP [dm6]	A	G	7.715e^-5	0.36	INTRON RIC-3
3R	26036246	3R_26036246_SNP [dm3] 3R_30210524_SNP [dm6]	T	A	7.749e^-5	0.36	UPSTREAM CecA1 DOWNSTREAM Anp INTERGENIC	regulatory region REDfly_CRMs
X	560903	X_560903_SNP [dm3] X_666870_SNP [dm6]	A	G	7.756e^-5	0.36	INTERGENIC
2L	3505033	2L_3505033_SNP [dm3] 2L_3505033_SNP [dm6]	T	G	7.760e^-5	0.36	INTRON tim	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9256677	2R_9256677_SNP [dm3] 2R_13369172_SNP [dm6]	G	C	7.766e^-5	0.36	INTERGENIC
2L	3663777	2L_3663777_SNP [dm3] 2L_3663777_SNP [dm6]	G	T	7.779e^-5	0.36	INTRON CG34340
2L	3438752	2L_3438752_SNP [dm3] 2L_3438752_SNP [dm6]	A	G	7.819e^-5	0.361	INTERGENIC
X	561877	X_561877_INS [dm3] X_667844_INS [dm6]	T	TTGT	7.827e^-5	0.361	INTERGENIC
2L	851818	2L_851818_SNP [dm3] 2L_851818_SNP [dm6]	G	T	7.862e^-5	0.362	NON_SYNONYMOUS_CODING CG4291 UPSTREAM drongo & 1 other DOWNSTREAM CR44060	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23181385	3R_23181385_SNP [dm3] 3R_27355663_SNP [dm6]	T	A	7.894e^-5	0.362	INTRON CG42534
2L	4621902	2L_4621902_SNP [dm3] 2L_4621902_SNP [dm6]	G	C	7.903e^-5	0.362	DOWNSTREAM CR44609 INTERGENIC
2L	3821842	2L_3821842_SNP [dm3] 2L_3821842_SNP [dm6]	C	T	7.952e^-5	0.363	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	23921142	3R_23921142_SNP [dm3] 3R_28095420_SNP [dm6]	C	A	7.969e^-5	0.363	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	26303881	3R_26303881_SNP [dm3] 3R_30478159_SNP [dm6]	C	A	8.021e^-5	0.364	SYNONYMOUS_CODING spdo INTRON PH4alphaEFB	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7253204	2L_7253204_SNP [dm3] 2L_7253204_SNP [dm6]	A	G	8.133e^-5	0.367	UPSTREAM CG13786 INTERGENIC
3L	22433028	3L_22433028_SNP [dm3] 3L_22439928_SNP [dm6]	C	T	8.140e^-5	0.367	INTERGENIC
2L	10531640	2L_10531640_SNP [dm3] 2L_10531640_SNP [dm6]	C	A	8.182e^-5	0.367	UTR_3_PRIME Lip4 UPSTREAM CG18301 DOWNSTREAM Lip4
2L	19875408	2L_19875408_SNP [dm3] 2L_19875408_SNP [dm6]	A	C	8.216e^-5	0.367	INTRON sick	TF binding site mE1_TFBS_cad
3R	17557315	3R_17557315_SNP [dm3] 3R_21731593_SNP [dm6]	T	G	8.219e^-5	0.367	INTERGENIC
X	560352	X_560352_SNP [dm3] X_666319_SNP [dm6]	A	G	8.235e^-5	0.367	INTERGENIC
2L	2098885	2L_2098885_SNP [dm3] 2L_2098885_SNP [dm6]	A	G	8.295e^-5	0.367	INTRON dpr3
2R	18440070	2R_18440070_SNP [dm3] 2R_22552565_SNP [dm6]	T	A	8.297e^-5	0.367	DOWNSTREAM CG6018 INTRON px
2R	18440078	2R_18440078_SNP [dm3] 2R_22552573_SNP [dm6]	A	G	8.297e^-5	0.367	DOWNSTREAM CG6018 INTRON px
2R	18440082	2R_18440082_SNP [dm3] 2R_22552577_SNP [dm6]	T	A	8.297e^-5	0.367	DOWNSTREAM CG6018 INTRON px
2L	6618941	2L_6618941_SNP [dm3] 2L_6618941_SNP [dm6]	A	G	8.311e^-5	0.367	UPSTREAM CR44913 INTRON CG11320
3L	15469359	3L_15469359_SNP [dm3] 3L_15476259_SNP [dm6]	A	T	8.348e^-5	0.367	INTERGENIC
X	17144817	X_17144817_SNP [dm3] X_17250784_SNP [dm6]	G	A	8.351e^-5	0.367	INTRON f	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14772624	3R_14772624_SNP [dm3] 3R_18946902_SNP [dm6]	T	C	8.407e^-5	0.368	INTRON CG42613
2L	1058843	2L_1058843_SNP [dm3] 2L_1058843_SNP [dm6]	A	T	8.424e^-5	0.368	INTRON S	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3L	2007347	3L_2007347_SNP [dm3] 3L_2007347_SNP [dm6]	A	G	8.428e^-5	0.368	INTERGENIC
3R	23161817	3R_23161817_SNP [dm3] 3R_27336095_SNP [dm6]	T	C	8.449e^-5	0.368	INTERGENIC
2L	1201830	2L_1201830_SNP [dm3] 2L_1201830_SNP [dm6]	C	T	8.488e^-5	0.369	DOWNSTREAM CG5011 INTERGENIC	TF binding site mE1_TFBS_cad
3R	27132996	3R_27132996_SNP [dm3] 3R_31307274_SNP [dm6]	G	A	8.606e^-5	0.372	INTERGENIC
2L	2147534	2L_2147534_SNP [dm3] 2L_2147534_SNP [dm6]	A	T	8.619e^-5	0.372	UTR_5_PRIME CG7261 UPSTREAM CG11723	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	23911909	3R_23911909_SNP [dm3] 3R_28086187_SNP [dm6]	G	A	8.639e^-5	0.372	UTR_3_PRIME CG34362 DOWNSTREAM CG34362 INTRON CG34362	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	400476	3R_400476_SNP [dm3] 3R_4574754_SNP [dm6]	T	A	8.647e^-5	0.372	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20599364	2R_20599364_SNP [dm3] 2R_24711841_SNP [dm6]	A	G	8.672e^-5	0.372	INTRON Mid1
X	11718302	X_11718302_SNP [dm3] X_11824269_SNP [dm6]	T	C	8.681e^-5	0.372	SYNONYMOUS_CODING rudhira	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12538372	3L_12538372_SNP [dm3] 3L_12545272_SNP [dm6]	T	A	8.726e^-5	0.373	INTRON sowah
2L	4833570	2L_4833570_SNP [dm3] 2L_4833570_SNP [dm6]	G	A	8.760e^-5	0.374	SYNONYMOUS_CODING Ir25a
2L	1034435	2L_1034435_SNP [dm3] 2L_1034435_SNP [dm6]	C	T	8.783e^-5	0.374	START_GAINED IA-2 UTR_5_PRIME IA-2 INTRON IA-2
2L	4819643	2L_4819643_SNP [dm3] 2L_4819643_SNP [dm6]	G	A	8.828e^-5	0.374	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	4820139	2L_4820139_SNP [dm3] 2L_4820139_SNP [dm6]	G	A	8.828e^-5	0.374	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	19935253	X_19935253_DEL [dm3] X_20041220_DEL [dm6]	CTCGACTCGCTGGC...	C	8.869e^-5	0.374	INTRON Dop2R
2L	5905768	2L_5905768_SNP [dm3] 2L_5905768_SNP [dm6]	C	T	8.870e^-5	0.374	EXON CR43808
3R	23161247	3R_23161247_SNP [dm3] 3R_27335525_SNP [dm6]	G	A	8.969e^-5	0.376	INTERGENIC
2L	1607143	2L_1607143_SNP [dm3] 2L_1607143_SNP [dm6]	G	A	8.985e^-5	0.376	UTR_3_PRIME haf INTRON CG31935	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23243926	3R_23243926_SNP [dm3] 3R_27418204_SNP [dm6]	G	C	8.986e^-5	0.376	INTRON side
X	16670633	X_16670633_SNP [dm3] X_16776600_SNP [dm6]	G	T	9.080e^-5	0.379	INTRON if	TF binding site BDTNP1_TFBS_dl
2L	6077513	2L_6077513_SNP [dm3] 2L_6077513_SNP [dm6]	G	C	9.102e^-5	0.379	UPSTREAM CR9162 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	23921104	3R_23921104_SNP [dm3] 3R_28095382_SNP [dm6]	T	C	9.120e^-5	0.379	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7392484	3L_7392484_SNP [dm3] 3L_7399384_SNP [dm6]	T	C	9.145e^-5	0.379	UPSTREAM CG18417 INTRON CG8562	TF binding site mE1_TFBS_cad
2L	2799275	2L_2799275_SNP [dm3] 2L_2799275_SNP [dm6]	T	C	9.158e^-5	0.379	DOWNSTREAM CR43821 INTRON Syt1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26456835	3R_26456835_SNP [dm3] 3R_30631113_SNP [dm6]	C	T	9.257e^-5	0.381	INTERGENIC	TF binding site mE1_TFBS_cad
3L	17252051	3L_17252051_SNP [dm3] 3L_17258951_SNP [dm6]	C	T	9.273e^-5	0.381	UPSTREAM CR43874 INTRON CR43870
3L	16317780	3L_16317780_SNP [dm3] 3L_16324680_SNP [dm6]	A	C	9.299e^-5	0.381	DOWNSTREAM CG13040 & 1 other INTERGENIC
3L	8221097	3L_8221097_SNP [dm3] 3L_8227997_SNP [dm6]	A	G	9.315e^-5	0.381	INTERGENIC
2L	3505087	2L_3505087_SNP [dm3] 2L_3505087_SNP [dm6]	A	C	9.343e^-5	0.381	INTRON tim	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11362131	3L_11362131_SNP [dm3] 3L_11369031_SNP [dm6]	C	G	9.344e^-5	0.381	INTERGENIC
3L	5206338	3L_5206338_SNP [dm3] 3L_5213238_SNP [dm6]	A	C	9.345e^-5	0.381	INTRON shep	TF binding site mE1_TFBS_HSA
2L	3640069	2L_3640069_SNP [dm3] 2L_3640069_SNP [dm6]	G	A	9.405e^-5	0.382	SYNONYMOUS_CODING for	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1643407	2L_1643407_SNP [dm3] 2L_1643407_SNP [dm6]	A	G	9.460e^-5	0.383	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5338128	3L_5338128_SNP [dm3] 3L_5345028_SNP [dm6]	G	C	9.470e^-5	0.383	SYNONYMOUS_CODING lama	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19307801	3R_19307801_SNP [dm3] 3R_23482079_SNP [dm6]	G	A	9.524e^-5	0.384	NON_SYNONYMOUS_CODING Ir94f
3R	15239741	3R_15239741_SNP [dm3] 3R_19414019_SNP [dm6]	A	G	9.629e^-5	0.384	INTRON CG31221	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	13834816	3L_13834816_SNP [dm3] 3L_13841716_SNP [dm6]	T	G	9.633e^-5	0.384	SYNONYMOUS_CODING CG8757 DOWNSTREAM CG8750	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	5206295	3L_5206295_SNP [dm3] 3L_5213195_SNP [dm6]	T	C	9.634e^-5	0.384	INTRON shep	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	14624641	3L_14624641_SNP [dm3] 3L_14631541_SNP [dm6]	G	A	9.639e^-5	0.384	SYNONYMOUS_CODING RecQ5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3R	16777286	3R_16777286_INS [dm3] 3R_20951564_INS [dm6]	T	TGTGCCT	9.645e^-5	0.384	INTRON Atpalpha	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	23975067	3R_23975067_SNP [dm3] 3R_28149345_SNP [dm6]	G	A	9.645e^-5	0.384	INTRON CG34354
2L	986326	2L_986326_SNP [dm3] 2L_986326_SNP [dm6]	G	A	9.737e^-5	0.387	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	7052208	2L_7052208_SNP [dm3] 2L_7052208_SNP [dm6]	A	G	9.778e^-5	0.388	SYNONYMOUS_CODING milt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9089570	2L_9089570_SNP [dm3] 2L_9089570_SNP [dm6]	T	A	9.799e^-5	0.388	DOWNSTREAM Toll-4 INTERGENIC
2L	15167198	2L_15167198_SNP [dm3] 2L_15167198_SNP [dm6]	A	G	9.819e^-5	0.388	SYNONYMOUS_CODING CG4168
2L	3847763	2L_3847763_SNP [dm3] 2L_3847763_SNP [dm6]	A	G	9.887e^-5	0.39	INTERGENIC	TF binding site mE1_TFBS_inv
3R	20309118	3R_20309118_SNP [dm3] 3R_24483396_SNP [dm6]	G	C	9.959e^-5	0.392	INTERGENIC
2L	4679729	2L_4679729_SNP [dm3] 2L_4679729_SNP [dm6]	A	G	1.012e^-4	0.397	INTERGENIC
X	3858259	X_3858259_SNP [dm3] X_3964226_SNP [dm6]	G	A	1.015e^-4	0.397	NON_SYNONYMOUS_CODING lva	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	521738	X_521738_SNP [dm3] X_627705_SNP [dm6]	A	G	1.017e^-4	0.397	UTR_3_PRIME CG17829 DOWNSTREAM RpL36
2L	10527357	2L_10527357_SNP [dm3] 2L_10527357_SNP [dm6]	A	G	1.019e^-4	0.397	UPSTREAM Lip4 INTERGENIC
2L	12704462	2L_12704462_DEL [dm3] 2L_12704462_DEL [dm6]	AA	A	1.022e^-4	0.397	UPSTREAM spict & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9760908	3L_9760908_SNP [dm3] 3L_9767808_SNP [dm6]	T	C	1.028e^-4	0.397	INTRON CG8177
3R	23189138	3R_23189138_SNP [dm3] 3R_27363416_SNP [dm6]	C	A	1.030e^-4	0.397	NON_SYNONYMOUS_CODING CG42534	TF binding site mE1_TFBS_chinmo
2L	13074646	2L_13074646_SNP [dm3] 2L_13074646_SNP [dm6]	C	T	1.031e^-4	0.397	INTERGENIC
2L	13074652	2L_13074652_SNP [dm3] 2L_13074652_SNP [dm6]	C	T	1.031e^-4	0.397	INTERGENIC
2L	1007687	2L_1007687_INS [dm3] 2L_1007687_INS [dm6]	G	GCAGTGG	1.034e^-4	0.397	DOWNSTREAM IA-2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2049025	2L_2049025_SNP [dm3] 2L_2049025_SNP [dm6]	T	A	1.035e^-4	0.397	DOWNSTREAM Kebab INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	9705000	2R_9705000_SNP [dm3] 2R_13817495_SNP [dm6]	G	C	1.040e^-4	0.397	SYNONYMOUS_CODING stj
3R	21001546	3R_21001546_SNP [dm3] 3R_25175824_SNP [dm6]	T	A	1.042e^-4	0.397	INTRON lobo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	22602254	3L_22602254_SNP [dm3] 3L_22609154_SNP [dm6]	G	C	1.045e^-4	0.397	INTRON CG14459
2R	7911728	2R_7911728_SNP [dm3] 2R_12024223_SNP [dm6]	C	T	1.045e^-4	0.397	INTRON CG8964	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	2649332	2L_2649332_SNP [dm3] 2L_2649332_SNP [dm6]	G	A	1.046e^-4	0.397	NON_SYNONYMOUS_CODING CG33125 UTR_3_PRIME CG33125 DOWNSTREAM CG43851
X	5187965	X_5187965_SNP [dm3] X_5293932_SNP [dm6]	A	T	1.052e^-4	0.397	INTERGENIC
3L	6584285	3L_6584285_SNP [dm3] 3L_6591185_SNP [dm6]	T	A	1.052e^-4	0.397	INTRON CG18769
3R	20830598	3R_20830598_SNP [dm3] 3R_25004876_SNP [dm6]	G	T	1.057e^-4	0.397	INTRON tnc
2L	12447446	2L_12447446_SNP [dm3] 2L_12447446_SNP [dm6]	G	C	1.057e^-4	0.397	INTRON CG5421
2L	1643348	2L_1643348_SNP [dm3] 2L_1643348_SNP [dm6]	G	A	1.058e^-4	0.397	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	3505037	2L_3505037_SNP [dm3] 2L_3505037_SNP [dm6]	G	T	1.058e^-4	0.397	INTRON tim	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23500039	3R_23500039_SNP [dm3] 3R_27674317_SNP [dm6]	T	C	1.059e^-4	0.397	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_chinmo
2L	14976432	2L_14976432_SNP [dm3] 2L_14976432_SNP [dm6]	T	C	1.062e^-4	0.397	INTRON mol
3R	27118947	3R_27118947_SNP [dm3] 3R_31293225_SNP [dm6]	G	C	1.065e^-4	0.397	INTERGENIC
2L	3426989	2L_3426989_SNP [dm3] 2L_3426989_SNP [dm6]	T	C	1.073e^-4	0.397	UPSTREAM pgant2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	13033601	2L_13033601_SNP [dm3] 2L_13033601_SNP [dm6]	G	T	1.076e^-4	0.397	INTRON CG9932
3R	8560916	3R_8560916_SNP [dm3] 3R_12735194_SNP [dm6]	G	A	1.078e^-4	0.397	INTERGENIC
2L	2286929	2L_2286929_SNP [dm3] 2L_2286929_SNP [dm6]	A	C	1.080e^-4	0.397	UPSTREAM CG31681 DOWNSTREAM CG42658 INTERGENIC
2L	2290527	2L_2290527_SNP [dm3] 2L_2290527_SNP [dm6]	T	C	1.080e^-4	0.397	SYNONYMOUS_CODING robl22E
2L	2098210	2L_2098210_DEL [dm3] 2L_2098210_DEL [dm6]	CAAACGTATG	C	1.081e^-4	0.397	INTRON dpr3
2L	3083403	2L_3083403_DEL [dm3] 2L_3083403_DEL [dm6]	CCCAAAATCATGCCTCTTTT...	C	1.082e^-4	0.397	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	5402300	2R_5402300_SNP [dm3] 2R_9514795_SNP [dm6]	A	G	1.083e^-4	0.397	INTRON brp
2L	3477699	2L_3477699_SNP [dm3] 2L_3477699_SNP [dm6]	C	A	1.083e^-4	0.397	UPSTREAM Thor DOWNSTREAM CR43928 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14992536	2R_14992536_SNP [dm3] 2R_19105031_SNP [dm6]	G	A	1.086e^-4	0.397	INTRON 5-HT1A
3L	14514283	3L_14514283_SNP [dm3] 3L_14521183_SNP [dm6]	C	A	1.092e^-4	0.398	INTRON bbg & 1 other
2L	10558480	2L_10558480_SNP [dm3] 2L_10558480_SNP [dm6]	T	G	1.098e^-4	0.399	INTRON Trim9	TF binding site mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv
2L	13983524	2L_13983524_SNP [dm3] 2L_13983524_SNP [dm6]	A	G	1.099e^-4	0.399	SYNONYMOUS_CODING rk DOWNSTREAM NimC2
X	4923090	X_4923090_SNP [dm3] X_5029057_SNP [dm6]	G	A	1.100e^-4	0.399	INTRON CR44833
2L	5411476	2L_5411476_SNP [dm3] 2L_5411476_SNP [dm6]	A	C	1.116e^-4	0.401	INTRON H15	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	15526988	2R_15526988_DEL [dm3] 2R_19639483_DEL [dm6]	TC	T	1.123e^-4	0.401	INTERGENIC
3L	5206327	3L_5206327_SNP [dm3] 3L_5213227_SNP [dm6]	C	A	1.129e^-4	0.401	INTRON shep	TF binding site mE1_TFBS_HSA
3R	24128966	3R_24128966_SNP [dm3] 3R_28303244_SNP [dm6]	G	A	1.132e^-4	0.401	DOWNSTREAM CG12516 INTERGENIC
3L	20298904	3L_20298904_SNP [dm3] 3L_20305804_SNP [dm6]	C	T	1.134e^-4	0.401	INTRON CG6597 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22484923	3R_22484923_SNP [dm3] 3R_26659201_SNP [dm6]	A	G	1.136e^-4	0.401	INTRON beat-VII
3R	27137719	3R_27137719_SNP [dm3] 3R_31311997_SNP [dm6]	C	T	1.137e^-4	0.401	INTRON CG34347
3R	26039694	3R_26039694_SNP [dm3] 3R_30213972_SNP [dm6]	A	G	1.137e^-4	0.401	UPSTREAM CecB DOWNSTREAM Cec2 INTERGENIC
2L	10524787	2L_10524787_SNP [dm3] 2L_10524787_SNP [dm6]	A	T	1.138e^-4	0.401	INTERGENIC
2R	9269184	2R_9269184_SNP [dm3] 2R_13381679_SNP [dm6]	G	T	1.138e^-4	0.401	INTERGENIC
2R	9269187	2R_9269187_SNP [dm3] 2R_13381682_SNP [dm6]	C	T	1.138e^-4	0.401	INTERGENIC
2R	9269189	2R_9269189_SNP [dm3] 2R_13381684_SNP [dm6]	C	T	1.138e^-4	0.401	INTERGENIC
2R	9269191	2R_9269191_SNP [dm3] 2R_13381686_SNP [dm6]	C	T	1.138e^-4	0.401	INTERGENIC
2R	9269192	2R_9269192_SNP [dm3] 2R_13381687_SNP [dm6]	T	C	1.138e^-4	0.401	INTERGENIC
2R	13901771	2R_13901771_SNP [dm3] 2R_18014266_SNP [dm6]	C	T	1.146e^-4	0.401	INTERGENIC
2R	13901803	2R_13901803_DEL [dm3] 2R_18014298_DEL [dm6]	CGT	C	1.146e^-4	0.401	INTERGENIC
2L	3479863	2L_3479863_SNP [dm3] 2L_3479863_SNP [dm6]	G	A	1.146e^-4	0.401	DOWNSTREAM Thor & 1 other INTERGENIC
3R	15311973	3R_15311973_SNP [dm3] 3R_19486251_SNP [dm6]	G	A	1.148e^-4	0.401	UPSTREAM Dys INTRON Dys
3L	2145662	3L_2145662_SNP [dm3] 3L_2145662_SNP [dm6]	T	C	1.148e^-4	0.401	INTRON zormin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2287221	2L_2287221_SNP [dm3] 2L_2287221_SNP [dm6]	C	T	1.163e^-4	0.403	UTR_3_PRIME CG42658 UPSTREAM CG31681
2R	9168209	2R_9168209_SNP [dm3] 2R_13280704_SNP [dm6]	G	C	1.164e^-4	0.403	INTRON Dh31-R
3R	23904852	3R_23904852_SNP [dm3] 3R_28079130_SNP [dm6]	C	A	1.169e^-4	0.403	INTRON CG34362
3R	10241927	3R_10241927_SNP [dm3] 3R_14416205_SNP [dm6]	A	T	1.172e^-4	0.403	INTRON cv-c	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	556534	X_556534_SNP [dm3] X_662501_SNP [dm6]	A	G	1.176e^-4	0.403	INTERGENIC
2L	6019103	2L_6019103_SNP [dm3] 2L_6019103_SNP [dm6]	T	C	1.180e^-4	0.403	NON_SYNONYMOUS_CODING H2.0	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_sens
3L	10064884	3L_10064884_DEL [dm3] 3L_10071784_DEL [dm6]	GCGTCATTAACAT...	G	1.185e^-4	0.403	CODON_DELETION dpr6 INTRON dpr6	TF binding site mE1_TFBS_HSA
2R	1064523	2R_1064523_SNP [dm3] 2R_5177018_SNP [dm6]	C	T	1.189e^-4	0.403	DOWNSTREAM Nipped-A INTERGENIC	transposable element FlyBase
3R	13283921	3R_13283921_SNP [dm3] 3R_17458199_SNP [dm6]	C	T	1.190e^-4	0.403	INTERGENIC
2L	2286930	2L_2286930_SNP [dm3] 2L_2286930_SNP [dm6]	G	A	1.193e^-4	0.403	UPSTREAM CG31681 DOWNSTREAM CG42658 INTERGENIC
3L	2016059	3L_2016059_SNP [dm3] 3L_2016059_SNP [dm6]	T	C	1.194e^-4	0.403	INTERGENIC
3L	15162393	3L_15162393_SNP [dm3] 3L_15169293_SNP [dm6]	T	G	1.196e^-4	0.403	INTERGENIC
3L	9347613	3L_9347613_SNP [dm3] 3L_9354513_SNP [dm6]	G	A	1.197e^-4	0.403	NON_SYNONYMOUS_CODING CG32040 INTRON UGP	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9347654	3L_9347654_SNP [dm3] 3L_9354554_SNP [dm6]	C	T	1.197e^-4	0.403	SYNONYMOUS_CODING CG32040 INTRON UGP	TF binding site mE1_TFBS_HSA
2R	5537910	2R_5537910_SNP [dm3] 2R_9650405_SNP [dm6]	C	A	1.199e^-4	0.403	INTRON Mmp2
3R	23181386	3R_23181386_SNP [dm3] 3R_27355664_SNP [dm6]	A	T	1.203e^-4	0.403	INTRON CG42534
2L	4833523	2L_4833523_SNP [dm3] 2L_4833523_SNP [dm6]	T	C	1.208e^-4	0.403	SYNONYMOUS_CODING Ir25a
3L	7827483	3L_7827483_SNP [dm3] 3L_7834383_SNP [dm6]	C	T	1.210e^-4	0.403	INTRON Pdp1	TF binding site mE1_TFBS_Trl
2L	5440045	2L_5440045_SNP [dm3] 2L_5440045_SNP [dm6]	C	T	1.211e^-4	0.403	UPSTREAM CR31647 INTERGENIC
2R	5535845	2R_5535845_SNP [dm3] 2R_9648340_SNP [dm6]	C	G	1.211e^-4	0.403	INTRON Mmp2
3L	9166538	3L_9166538_SNP [dm3] 3L_9173438_SNP [dm6]	T	G	1.212e^-4	0.403	INTRON Rdl
2L	12960803	2L_12960803_SNP [dm3] 2L_12960803_SNP [dm6]	G	A	1.213e^-4	0.403	INTERGENIC
3L	21197654	3L_21197654_SNP [dm3] 3L_21204554_SNP [dm6]	C	T	1.213e^-4	0.403	UPSTREAM CG10512 INTRON CG10512
3L	10850342	3L_10850342_SNP [dm3] 3L_10857242_SNP [dm6]	T	A	1.224e^-4	0.403	UPSTREAM tna INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	15270528	2L_15270528_SNP [dm3] 2L_15270528_SNP [dm6]	C	T	1.225e^-4	0.403	UPSTREAM Cul3 INTRON Cul3	TF binding site BDTNP1_TFBS_dl
2L	3479871	2L_3479871_SNP [dm3] 2L_3479871_SNP [dm6]	A	G	1.226e^-4	0.403	DOWNSTREAM Thor & 1 other INTERGENIC
2L	697326	2L_697326_SNP [dm3] 2L_697326_SNP [dm6]	G	T	1.226e^-4	0.403	INTRON ds
2L	699031	2L_699031_DEL [dm3] 2L_699031_DEL [dm6]	TTTTTCGT	T	1.226e^-4	0.403	INTRON ds
2L	742179	2L_742179_SNP [dm3] 2L_742179_SNP [dm6]	T	A	1.226e^-4	0.403	UPSTREAM Eaat2 INTRON Eaat2
2L	742190	2L_742190_SNP [dm3] 2L_742190_SNP [dm6]	A	T	1.226e^-4	0.403	UPSTREAM Eaat2 INTRON Eaat2
2L	742191	2L_742191_SNP [dm3] 2L_742191_SNP [dm6]	A	T	1.226e^-4	0.403	UPSTREAM Eaat2 INTRON Eaat2
2L	749562	2L_749562_SNP [dm3] 2L_749562_SNP [dm6]	G	A	1.226e^-4	0.403	UPSTREAM GABA-B-R3 INTERGENIC
2L	833547	2L_833547_SNP [dm3] 2L_833547_SNP [dm6]	G	T	1.226e^-4	0.403	DOWNSTREAM drongo & 1 other INTERGENIC
2L	1110930	2L_1110930_DEL [dm3] 2L_1110930_DEL [dm6]	AA	A	1.227e^-4	0.403	INTRON CG14339
2L	5118987	2L_5118987_SNP [dm3] 2L_5118987_SNP [dm6]	A	T	1.232e^-4	0.404	INTRON Msp300
3L	6952897	3L_6952897_SNP [dm3] 3L_6959797_SNP [dm6]	G	A	1.248e^-4	0.406	UTR_3_PRIME sgl DOWNSTREAM Surf1
2L	3482808	2L_3482808_SNP [dm3] 2L_3482808_SNP [dm6]	A	T	1.249e^-4	0.406	INTRON CG15414
3L	22856769	3L_22856769_SNP [dm3] 3L_22863669_SNP [dm6]	C	A	1.249e^-4	0.406	UPSTREAM CG33169 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_cad
2R	6760610	2R_6760610_SNP [dm3] 2R_10873105_SNP [dm6]	T	A	1.255e^-4	0.406	INTRON CG30015
2R	7725576	2R_7725576_SNP [dm3] 2R_11838071_SNP [dm6]	G	T	1.258e^-4	0.406	INTRON Sobp	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	18441495	2L_18441495_SNP [dm3] 2L_18441495_SNP [dm6]	G	A	1.263e^-4	0.406	UTR_3_PRIME RpS26 DOWNSTREAM RpS26	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	6119230	X_6119230_SNP [dm3] X_6225197_SNP [dm6]	G	A	1.266e^-4	0.406	UPSTREAM sqh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	5878581	3L_5878581_SNP [dm3] 3L_5885481_SNP [dm6]	G	A	1.266e^-4	0.406	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	14534769	2R_14534769_SNP [dm3] 2R_18647264_SNP [dm6]	T	C	1.267e^-4	0.406	INTRON SP2637
2L	14402784	2L_14402784_SNP [dm3] 2L_14402784_SNP [dm6]	G	A	1.270e^-4	0.406	INTRON elB
2L	12512376	2L_12512376_SNP [dm3] 2L_12512376_SNP [dm6]	C	A	1.270e^-4	0.406	INTRON bun
3R	3790599	3R_3790599_SNP [dm3] 3R_7964877_SNP [dm6]	C	T	1.271e^-4	0.406	INTRON dsx
3R	16510083	3R_16510083_SNP [dm3] 3R_20684361_SNP [dm6]	T	A	1.271e^-4	0.406	INTERGENIC
3R	22994035	3R_22994035_SNP [dm3] 3R_27168313_SNP [dm6]	G	A	1.276e^-4	0.406	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
3R	24823973	3R_24823973_DEL [dm3] 3R_28998251_DEL [dm6]	AA	A	1.277e^-4	0.406	INTRON wat
2R	13089762	2R_13089762_SNP [dm3] 2R_17202257_SNP [dm6]	G	A	1.277e^-4	0.406	INTERGENIC
2R	13089765	2R_13089765_SNP [dm3] 2R_17202260_SNP [dm6]	G	T	1.277e^-4	0.406	INTERGENIC
2L	1718517	2L_1718517_SNP [dm3] 2L_1718517_SNP [dm6]	G	C	1.286e^-4	0.408	INTRON Rim2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	20520728	2R_20520728_SNP [dm3] 2R_24633205_SNP [dm6]	C	A	1.295e^-4	0.409	UPSTREAM CR43787 DOWNSTREAM Cyp9c1 INTRON CG13594
X	3857563	X_3857563_SNP [dm3] X_3963530_SNP [dm6]	A	G	1.296e^-4	0.409	SYNONYMOUS_CODING lva	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4661735	2L_4661735_SNP [dm3] 2L_4661735_SNP [dm6]	G	A	1.297e^-4	0.409	INTERGENIC
3L	8300665	3L_8300665_SNP [dm3] 3L_8307565_SNP [dm6]	C	T	1.303e^-4	0.409	UPSTREAM Gr66a INTRON BI-1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3L	22421666	3L_22421666_SNP [dm3] 3L_22428566_SNP [dm6]	C	T	1.304e^-4	0.409	INTERGENIC
2L	2453863	2L_2453863_DEL [dm3] 2L_2453863_DEL [dm6]	TT	T	1.305e^-4	0.409	UPSTREAM dpp INTRON dpp	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA
3R	18001702	3R_18001702_SNP [dm3] 3R_22175980_SNP [dm6]	C	A	1.307e^-4	0.409	INTRON SKIP
X	3858336	X_3858336_SNP [dm3] X_3964303_SNP [dm6]	T	C	1.309e^-4	0.409	NON_SYNONYMOUS_CODING lva	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	559535	X_559535_SNP [dm3] X_665502_SNP [dm6]	T	G	1.310e^-4	0.409	INTERGENIC	transposable element FlyBase
3L	9340072	3L_9340072_SNP [dm3] 3L_9346972_SNP [dm6]	T	C	1.312e^-4	0.409	SYNONYMOUS_CODING PGRP-LC UTR_3_PRIME PGRP-LC DOWNSTREAM PGRP-LC INTRON PGRP-LC
3L	5206361	3L_5206361_SNP [dm3] 3L_5213261_SNP [dm6]	C	T	1.315e^-4	0.409	INTRON shep
2L	5411460	2L_5411460_SNP [dm3] 2L_5411460_SNP [dm6]	C	A	1.317e^-4	0.409	INTRON H15	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	23181285	3R_23181285_SNP [dm3] 3R_27355563_SNP [dm6]	G	T	1.318e^-4	0.409	INTRON CG42534
3R	25544719	3R_25544719_SNP [dm3] 3R_29718997_SNP [dm6]	G	T	1.321e^-4	0.409	UTR_5_PRIME CG15506	regulatory region REDfly_CRMs
2L	9332910	2L_9332910_SNP [dm3] 2L_9332910_SNP [dm6]	C	A	1.325e^-4	0.409	UPSTREAM Eaat1 DOWNSTREAM Cks30A INTERGENIC
2L	3429185	2L_3429185_SNP [dm3] 2L_3429185_SNP [dm6]	G	T	1.328e^-4	0.409	INTERGENIC
3L	16876846	3L_16876846_SNP [dm3] 3L_16883746_SNP [dm6]	T	C	1.331e^-4	0.409	INTRON Lmpt
X	6119463	X_6119463_INS [dm3] X_6225430_INS [dm6]	T	TA	1.336e^-4	0.409	UPSTREAM sqh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D
2L	993784	2L_993784_SNP [dm3] 2L_993784_SNP [dm6]	C	T	1.337e^-4	0.409	INTERGENIC
X	4798930	X_4798930_SNP [dm3] X_4904897_SNP [dm6]	C	T	1.337e^-4	0.409	INTRON CG42594	TF binding site mE1_TFBS_chinmo
3R	14317712	3R_14317712_SNP [dm3] 3R_18491990_SNP [dm6]	G	C	1.337e^-4	0.409	INTRON fru
3L	5206333	3L_5206333_MNP [dm3] 3L_5213233_MNP [dm6]	TTG	ACT	1.344e^-4	0.41	INTRON shep	TF binding site mE1_TFBS_HSA
3R	23315696	3R_23315696_DEL [dm3] 3R_27489974_DEL [dm6]	GCA	T	1.344e^-4	0.41	DOWNSTREAM Gr98a INTERGENIC
X	559524	X_559524_SNP [dm3] X_665491_SNP [dm6]	A	G	1.345e^-4	0.41	INTERGENIC	transposable element FlyBase
3L	7517073	3L_7517073_SNP [dm3] 3L_7523973_SNP [dm6]	C	A	1.351e^-4	0.41	INTRON ltl
X	557513	X_557513_SNP [dm3] X_663480_SNP [dm6]	T	G	1.355e^-4	0.41	INTERGENIC	TF binding site mE1_TFBS_sens
3R	23904231	3R_23904231_SNP [dm3] 3R_28078509_SNP [dm6]	C	G	1.357e^-4	0.41	INTRON CG34362
3R	18960573	3R_18960573_SNP [dm3] 3R_23134851_SNP [dm6]	G	A	1.358e^-4	0.41	INTRON hh	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	2827081	2L_2827081_DEL [dm3] 2L_2827081_DEL [dm6]	GTTAG	G	1.362e^-4	0.41	INTRON Duox
2L	3534347	2L_3534347_SNP [dm3] 2L_3534347_SNP [dm6]	C	G	1.365e^-4	0.41	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	15233739	3R_15233739_SNP [dm3] 3R_19408017_SNP [dm6]	C	T	1.367e^-4	0.41	INTERGENIC
3L	763443	3L_763443_SNP [dm3] 3L_763443_SNP [dm6]	T	C	1.368e^-4	0.41	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	3426964	2L_3426964_SNP [dm3] 2L_3426964_SNP [dm6]	C	G	1.371e^-4	0.41	UPSTREAM pgant2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	23444204	3R_23444204_SNP [dm3] 3R_27618482_SNP [dm6]	C	G	1.372e^-4	0.41	INTRON Tusp
2L	5622550	2L_5622550_SNP [dm3] 2L_5622550_SNP [dm6]	C	A	1.372e^-4	0.41	INTRON Cyp6a16
2L	4835681	2L_4835681_SNP [dm3] 2L_4835681_SNP [dm6]	G	C	1.374e^-4	0.41	UTR_3_PRIME tank UPSTREAM Ir25a
3L	4840221	3L_4840221_SNP [dm3] 3L_4840221_SNP [dm6]	C	A	1.379e^-4	0.411	UPSTREAM CG13707 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	987761	2L_987761_SNP [dm3] 2L_987761_SNP [dm6]	A	G	1.380e^-4	0.411	DOWNSTREAM CR44801 INTERGENIC
2L	10533159	2L_10533159_SNP [dm3] 2L_10533159_SNP [dm6]	A	G	1.383e^-4	0.411	SYNONYMOUS_CODING CG18301
2L	9766102	2L_9766102_SNP [dm3] 2L_9766102_SNP [dm6]	C	G	1.387e^-4	0.411	SYNONYMOUS_CODING ppk18 UPSTREAM CG4017 DOWNSTREAM und
3R	16889793	3R_16889793_SNP [dm3] 3R_21064071_SNP [dm6]	T	G	1.393e^-4	0.412	UTR_5_PRIME Cortactin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	7962396	X_7962396_SNP [dm3] X_8068363_SNP [dm6]	T	C	1.403e^-4	0.414	SYNONYMOUS_CODING mys	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	1925380	2L_1925380_SNP [dm3] 2L_1925380_SNP [dm6]	C	T	1.403e^-4	0.414	INTRON CG7337
3L	22858413	3L_22858413_SNP [dm3] 3L_22865313_SNP [dm6]	T	A	1.408e^-4	0.415	UPSTREAM CG33170 DOWNSTREAM CG33169 INTRON CG33170	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
X	8861451	X_8861451_SNP [dm3] X_8967418_SNP [dm6]	C	T	1.411e^-4	0.415	INTRON rdgA
2L	4834522	2L_4834522_SNP [dm3] 2L_4834522_SNP [dm6]	C	T	1.422e^-4	0.417	UPSTREAM Ir25a DOWNSTREAM tank INTRON Ir25a
3R	23012494	3R_23012494_SNP [dm3] 3R_27186772_SNP [dm6]	T	C	1.424e^-4	0.417	INTRON Ser	regulatory region REDfly_CRMs
X	561814	X_561814_SNP [dm3] X_667781_SNP [dm6]	G	C	1.425e^-4	0.417	INTERGENIC
3R	23161682	3R_23161682_SNP [dm3] 3R_27335960_SNP [dm6]	A	G	1.426e^-4	0.417	INTERGENIC
3R	26735248	3R_26735248_SNP [dm3] 3R_30909526_SNP [dm6]	T	C	1.429e^-4	0.417	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	4936431	3L_4936431_INS [dm3] 3L_4936431_INS [dm6]	G	GG	1.431e^-4	0.417	DOWNSTREAM Con INTERGENIC
2L	11901722	2L_11901722_SNP [dm3] 2L_11901722_SNP [dm6]	T	A	1.434e^-4	0.417	INTRON Pde1c
X	8861445	X_8861445_SNP [dm3] X_8967412_SNP [dm6]	T	C	1.435e^-4	0.417	INTRON rdgA
3L	7826484	3L_7826484_SNP [dm3] 3L_7833384_SNP [dm6]	T	C	1.439e^-4	0.417	UPSTREAM Pdp1 INTRON Pdp1
2L	10600971	2L_10600971_SNP [dm3] 2L_10600971_SNP [dm6]	T	G	1.444e^-4	0.418	INTRON Trim9
2L	2041724	2L_2041724_SNP [dm3] 2L_2041724_SNP [dm6]	C	G	1.449e^-4	0.419	SYNONYMOUS_CODING Su_dx_	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6952896	3L_6952896_SNP [dm3] 3L_6959796_SNP [dm6]	G	A	1.455e^-4	0.42	UTR_3_PRIME sgl DOWNSTREAM Surf1
X	8861454	X_8861454_SNP [dm3] X_8967421_SNP [dm6]	G	C	1.457e^-4	0.42	INTRON rdgA
2R	19041015	2R_19041015_INS [dm3] 2R_23153492_INS [dm6]	G	GCCAG	1.459e^-4	0.42	UPSTREAM CG9899 DOWNSTREAM CG43207 INTERGENIC
2L	3091228	2L_3091228_SNP [dm3] 2L_3091228_SNP [dm6]	G	A	1.461e^-4	0.42	UPSTREAM toc INTRON toc
2L	7472820	2L_7472820_SNP [dm3] 2L_7472820_SNP [dm6]	C	T	1.464e^-4	0.42	UTR_3_PRIME Ziz DOWNSTREAM CG6055
3R	22603579	3R_22603579_SNP [dm3] 3R_26777857_SNP [dm6]	A	T	1.477e^-4	0.422	INTERGENIC
2L	20422456	2L_20422456_SNP [dm3] 2L_20422456_SNP [dm6]	G	A	1.477e^-4	0.422	DOWNSTREAM snoRNA:Psi18S-640f & 4 others INTRON Arpc2	TF binding site mE1_TFBS_kn
2L	21212364	2L_21212364_INS [dm3] 2L_21212364_INS [dm6]	A	ATTTTGCCTTTA...	1.482e^-4	0.423	UTR_3_PRIME Atg18b DOWNSTREAM Atg18b & 1 other
3L	9967167	3L_9967167_SNP [dm3] 3L_9974067_SNP [dm6]	G	T	1.486e^-4	0.423	UPSTREAM dpr6 DOWNSTREAM vnc & 1 other INTERGENIC
3L	5206375	3L_5206375_SNP [dm3] 3L_5213275_SNP [dm6]	C	T	1.487e^-4	0.423	INTRON shep
2L	10007649	2L_10007649_SNP [dm3] 2L_10007649_SNP [dm6]	G	A	1.493e^-4	0.424	SYNONYMOUS_CODING CG4747
2L	10527433	2L_10527433_INS [dm3] 2L_10527433_INS [dm6]	T	TT	1.500e^-4	0.425	UPSTREAM Lip4 INTERGENIC
3R	8560928	3R_8560928_SNP [dm3] 3R_12735206_SNP [dm6]	A	C	1.501e^-4	0.425	INTERGENIC
3R	5123519	3R_5123519_SNP [dm3] 3R_9297797_SNP [dm6]	G	A	1.503e^-4	0.425	INTRON CG8861
2L	1016919	2L_1016919_SNP [dm3] 2L_1016919_SNP [dm6]	G	A	1.505e^-4	0.425	NON_SYNONYMOUS_CODING IA-2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	20316079	2R_20316079_SNP [dm3] 2R_24428556_SNP [dm6]	C	A	1.509e^-4	0.425	UPSTREAM prom INTERGENIC
2L	7515539	2L_7515539_SNP [dm3] 2L_7515539_SNP [dm6]	A	T	1.510e^-4	0.425	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da
X	4537654	X_4537654_SNP [dm3] X_4643621_SNP [dm6]	T	G	1.516e^-4	0.426	INTRON CG3081 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	9167052	2R_9167052_SNP [dm3] 2R_13279547_SNP [dm6]	T	A	1.516e^-4	0.426	INTRON Dh31-R
2R	16908655	2R_16908655_SNP [dm3] 2R_21021150_SNP [dm6]	G	T	1.521e^-4	0.426	INTRON RIC-3
2L	10150900	2L_10150900_SNP [dm3] 2L_10150900_SNP [dm6]	T	G	1.523e^-4	0.426	NON_SYNONYMOUS_CODING CG4839 INTRON CG44153
3R	21003557	3R_21003557_SNP [dm3] 3R_25177835_SNP [dm6]	G	A	1.532e^-4	0.428	INTRON lobo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4830895	2L_4830895_SNP [dm3] 2L_4830895_SNP [dm6]	T	C	1.544e^-4	0.43	UTR_3_PRIME Ir25a UPSTREAM mir-4912 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2L	2695673	2L_2695673_SNP [dm3] 2L_2695673_SNP [dm6]	G	A	1.545e^-4	0.43	SYNONYMOUS_CODING CG15398 INTRON CG31690	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6952938	3L_6952938_SNP [dm3] 3L_6959838_SNP [dm6]	A	G	1.547e^-4	0.43	UTR_3_PRIME sgl DOWNSTREAM Surf1
3R	27136740	3R_27136740_SNP [dm3] 3R_31311018_SNP [dm6]	A	T	1.552e^-4	0.43	UPSTREAM CG34347 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	23275457	3R_23275457_SNP [dm3] 3R_27449735_SNP [dm6]	A	T	1.554e^-4	0.43	INTERGENIC
2L	2998993	2L_2998993_SNP [dm3] 2L_2998993_SNP [dm6]	C	T	1.555e^-4	0.43	UPSTREAM CG17265 DOWNSTREAM CG3558 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h
2L	851918	2L_851918_SNP [dm3] 2L_851918_SNP [dm6]	G	A	1.555e^-4	0.43	SYNONYMOUS_CODING CG4291 UPSTREAM drongo & 1 other DOWNSTREAM CR44060	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3611524	2L_3611524_SNP [dm3] 2L_3611524_SNP [dm6]	A	T	1.559e^-4	0.43	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	19903306	X_19903306_SNP [dm3] X_20009273_SNP [dm6]	A	T	1.561e^-4	0.43	INTRON Dop2R
2L	2276396	2L_2276396_SNP [dm3] 2L_2276396_SNP [dm6]	A	T	1.570e^-4	0.431	INTRON CR43753
2L	2276405	2L_2276405_SNP [dm3] 2L_2276405_SNP [dm6]	T	G	1.570e^-4	0.431	INTRON CR43753
2L	9987568	2L_9987568_SNP [dm3] 2L_9987568_SNP [dm6]	T	C	1.572e^-4	0.431	INTRON bib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
3L	7517278	3L_7517278_SNP [dm3] 3L_7524178_SNP [dm6]	G	C	1.573e^-4	0.431	INTRON ltl
2L	5262640	2L_5262640_SNP [dm3] 2L_5262640_SNP [dm6]	A	G	1.584e^-4	0.432	INTRON tkv	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	26324374	3R_26324374_SNP [dm3] 3R_30498652_SNP [dm6]	C	T	1.585e^-4	0.432	INTRON PH4alphaNE1	TF binding site mE1_TFBS_cad
3R	26324375	3R_26324375_SNP [dm3] 3R_30498653_SNP [dm6]	A	T	1.585e^-4	0.432	INTRON PH4alphaNE1	TF binding site mE1_TFBS_cad
3R	5502430	3R_5502430_SNP [dm3] 3R_9676708_SNP [dm6]	C	A	1.591e^-4	0.432	INTRON CG8358	TF binding site mE1_TFBS_sens
2L	3646830	2L_3646830_SNP [dm3] 2L_3646830_SNP [dm6]	G	C	1.591e^-4	0.432	UPSTREAM for INTRON for
2L	3083389	2L_3083389_SNP [dm3] 2L_3083389_SNP [dm6]	C	A	1.598e^-4	0.432	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	3083471	2L_3083471_SNP [dm3] 2L_3083471_SNP [dm6]	T	C	1.598e^-4	0.432	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	16910959	2L_16910959_SNP [dm3] 2L_16910959_SNP [dm6]	A	G	1.599e^-4	0.432	SYNONYMOUS_CODING tweek UPSTREAM ApepP	TF binding site mE1_TFBS_cad
2L	15028381	2L_15028381_SNP [dm3] 2L_15028381_SNP [dm6]	A	G	1.601e^-4	0.432	SYNONYMOUS_CODING CG33310 INTRON GABA-B-R1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1191145	2L_1191145_INS [dm3] 2L_1191145_INS [dm6]	A	AA	1.603e^-4	0.432	INTRON CG5001
2R	1882407	2R_1882407_SNP [dm3] 2R_5994902_SNP [dm6]	T	A	1.611e^-4	0.434	INTRON Src42A
3L	22597306	3L_22597306_SNP [dm3] 3L_22604206_SNP [dm6]	T	C	1.615e^-4	0.434	INTRON CG14459
2L	4627471	2L_4627471_SNP [dm3] 2L_4627471_SNP [dm6]	C	T	1.618e^-4	0.434	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	2768175	X_2768175_SNP [dm3] X_2874142_SNP [dm6]	G	C	1.618e^-4	0.434	INTRON kirre
3R	23000867	3R_23000867_SNP [dm3] 3R_27175145_SNP [dm6]	G	A	1.627e^-4	0.436	INTRON Ser
3R	23916126	3R_23916126_SNP [dm3] 3R_28090404_SNP [dm6]	A	C	1.629e^-4	0.436	UTR_3_PRIME CG34362
3R	26324368	3R_26324368_INS [dm3] 3R_30498646_INS [dm6]	T	TTGAAATTT	1.633e^-4	0.436	INTRON PH4alphaNE1	TF binding site mE1_TFBS_cad
2R	8442065	2R_8442065_SNP [dm3] 2R_12554560_SNP [dm6]	T	C	1.635e^-4	0.436	INTRON fra	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Kr
3L	2893256	3L_2893256_SNP [dm3] 3L_2893256_SNP [dm6]	A	T	1.642e^-4	0.437	INTERGENIC
3L	22602255	3L_22602255_SNP [dm3] 3L_22609155_SNP [dm6]	C	T	1.646e^-4	0.438	INTRON CG14459
2L	5251613	2L_5251613_SNP [dm3] 2L_5251613_SNP [dm6]	G	A	1.655e^-4	0.439	INTRON tkv
3L	4278524	3L_4278524_SNP [dm3] 3L_4278524_SNP [dm6]	A	C	1.656e^-4	0.439	DOWNSTREAM CG1273 INTRON CG1311	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12911350	2L_12911350_DEL [dm3] 2L_12911350_DEL [dm6]	TT	T	1.659e^-4	0.439	INTERGENIC
2L	2913780	2L_2913780_INS [dm3] 2L_2913780_INS [dm6]	T	TGT	1.663e^-4	0.439	INTRON lilli
3L	6052264	3L_6052264_SNP [dm3] 3L_6059164_SNP [dm6]	C	A	1.664e^-4	0.439	UPSTREAM CG6592 EXON CR45441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
2R	13104855	2R_13104855_SNP [dm3] 2R_17217350_SNP [dm6]	C	G	1.664e^-4	0.439	INTRON mbl
2L	10527425	2L_10527425_SNP [dm3] 2L_10527425_SNP [dm6]	T	A	1.669e^-4	0.439	UPSTREAM Lip4 INTERGENIC
2L	4811333	2L_4811333_SNP [dm3] 2L_4811333_SNP [dm6]	T	C	1.674e^-4	0.439	DOWNSTREAM CR45297 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	15233670	3R_15233670_SNP [dm3] 3R_19407948_SNP [dm6]	C	G	1.675e^-4	0.439	INTERGENIC
2L	1708674	2L_1708674_SNP [dm3] 2L_1708674_SNP [dm6]	G	A	1.676e^-4	0.439	SYNONYMOUS_CODING CG17660 EXON CR44976	TF binding site mE1_TFBS_cad
2L	3624891	2L_3624891_SNP [dm3] 2L_3624891_SNP [dm6]	A	T	1.685e^-4	0.439	INTRON for	TF binding site BDTNP1_TFBS_da mE1_TFBS_GATAe mE1_TFBS_HSA
2L	1021878	2L_1021878_SNP [dm3] 2L_1021878_SNP [dm6]	G	A	1.688e^-4	0.439	INTRON IA-2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	788331	2L_788331_SNP [dm3] 2L_788331_SNP [dm6]	G	A	1.688e^-4	0.439	SYNONYMOUS_CODING Pkg21D UTR_3_PRIME CG3544	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8438773	2R_8438773_SNP [dm3] 2R_12551268_SNP [dm6]	G	A	1.692e^-4	0.439	INTRON fra
3L	18882179	3L_18882179_SNP [dm3] 3L_18889079_SNP [dm6]	T	A	1.692e^-4	0.439	INTRON CG3961
2L	2163711	2L_2163711_SNP [dm3] 2L_2163711_SNP [dm6]	C	A	1.697e^-4	0.439	INTRON aop	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	13952288	2L_13952288_SNP [dm3] 2L_13952288_SNP [dm6]	T	A	1.697e^-4	0.439	INTRON Ance-3
X	18182509	X_18182509_SNP [dm3] X_18288476_SNP [dm6]	A	G	1.699e^-4	0.439	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	13388662	3R_13388662_SNP [dm3] 3R_17562940_SNP [dm6]	C	T	1.704e^-4	0.439	INTRON Hmx
X	559552	X_559552_SNP [dm3] X_665519_SNP [dm6]	G	T	1.704e^-4	0.439	INTERGENIC	transposable element FlyBase
3L	16328563	3L_16328563_SNP [dm3] 3L_16335463_SNP [dm6]	A	T	1.706e^-4	0.439	INTERGENIC
3R	23916127	3R_23916127_SNP [dm3] 3R_28090405_SNP [dm6]	A	C	1.707e^-4	0.439	UTR_3_PRIME CG34362
2L	877046	2L_877046_SNP [dm3] 2L_877046_SNP [dm6]	A	T	1.709e^-4	0.439	UPSTREAM ninaA DOWNSTREAM CG15824 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	21268141	2L_21268141_SNP [dm3] 2L_21268141_SNP [dm6]	G	T	1.714e^-4	0.439	INTRON CG8671	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	27115976	3R_27115976_SNP [dm3] 3R_31290254_SNP [dm6]	G	T	1.715e^-4	0.439	INTERGENIC
2L	2563305	2L_2563305_SNP [dm3] 2L_2563305_SNP [dm6]	G	A	1.715e^-4	0.439	SYNONYMOUS_CODING Cyp309a1
2L	3218491	2L_3218491_SNP [dm3] 2L_3218491_SNP [dm6]	A	G	1.717e^-4	0.439	INTERGENIC
2L	12890777	2L_12890777_SNP [dm3] 2L_12890777_SNP [dm6]	A	T	1.723e^-4	0.44	INTERGENIC
3R	24612165	3R_24612165_SNP [dm3] 3R_28786443_SNP [dm6]	T	A	1.731e^-4	0.44	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	10601419	2R_10601419_SNP [dm3] 2R_14713914_SNP [dm6]	C	G	1.731e^-4	0.44	UPSTREAM mspo INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	20456077	3L_20456077_SNP [dm3] 3L_20462977_SNP [dm6]	A	T	1.735e^-4	0.44	DOWNSTREAM mag INTRON CG5195
2L	13952338	2L_13952338_SNP [dm3] 2L_13952338_SNP [dm6]	C	T	1.736e^-4	0.44	INTRON Ance-3
2L	12960976	2L_12960976_SNP [dm3] 2L_12960976_SNP [dm6]	G	T	1.736e^-4	0.44	INTERGENIC
2L	4862010	2L_4862010_SNP [dm3] 2L_4862010_SNP [dm6]	T	C	1.740e^-4	0.441	INTRON pog
3L	12606363	3L_12606363_SNP [dm3] 3L_12613263_SNP [dm6]	A	T	1.745e^-4	0.441	INTRON caup	silencer mE1_HDAC_PRE
2R	1844466	2R_1844466_SNP [dm3] 2R_5956961_SNP [dm6]	C	G	1.749e^-4	0.442	UPSTREAM CG7882 INTERGENIC
2L	21213993	2L_21213993_SNP [dm3] 2L_21213993_SNP [dm6]	G	C	1.754e^-4	0.442	SYNONYMOUS_CODING Atg18b	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	4276320	3L_4276320_SNP [dm3] 3L_4276320_SNP [dm6]	A	T	1.755e^-4	0.442	NON_SYNONYMOUS_CODING CG1273	TF binding site mE1_TFBS_sens
3L	22424635	3L_22424635_SNP [dm3] 3L_22431535_SNP [dm6]	A	C	1.766e^-4	0.443	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23920528	3R_23920528_SNP [dm3] 3R_28094806_SNP [dm6]	A	T	1.767e^-4	0.443	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	23920542	3R_23920542_SNP [dm3] 3R_28094820_SNP [dm6]	A	T	1.767e^-4	0.443	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	21107269	3L_21107269_SNP [dm3] 3L_21114169_SNP [dm6]	G	T	1.770e^-4	0.443	INTRON ko	regulatory region REDfly_CRMs
3R	14324089	3R_14324089_SNP [dm3] 3R_18498367_SNP [dm6]	C	T	1.779e^-4	0.445	INTRON fru	TF binding site mE1_TFBS_HSA
2L	3572481	2L_3572481_SNP [dm3] 2L_3572481_SNP [dm6]	T	A	1.780e^-4	0.445	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3428504	2L_3428504_SNP [dm3] 2L_3428504_SNP [dm6]	G	A	1.783e^-4	0.445	INTERGENIC
3L	10850343	3L_10850343_SNP [dm3] 3L_10857243_SNP [dm6]	C	T	1.790e^-4	0.445	UPSTREAM tna INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	8441411	2R_8441411_SNP [dm3] 2R_12553906_SNP [dm6]	A	G	1.790e^-4	0.445	INTRON fra	TF binding site mE1_TFBS_HSA
X	3857876	X_3857876_SNP [dm3] X_3963843_SNP [dm6]	C	A	1.795e^-4	0.446	SYNONYMOUS_CODING lva	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5572071	X_5572071_SNP [dm3] X_5678038_SNP [dm6]	T	A	1.806e^-4	0.448	INTRON Tre1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	12510450	2L_12510450_DEL [dm3] 2L_12510450_DEL [dm6]	GCAAAT	G	1.813e^-4	0.448	INTRON bun	TF binding site mE1_TFBS_h mE1_TFBS_HSA
2L	12510459	2L_12510459_INS [dm3] 2L_12510459_INS [dm6]	T	TA	1.813e^-4	0.448	INTRON bun	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3R	23161708	3R_23161708_DEL [dm3] 3R_27335986_DEL [dm6]	GCTTTGGCCACGCCTCGAGC...	G	1.816e^-4	0.448	INTERGENIC
X	18182577	X_18182577_SNP [dm3] X_18288544_SNP [dm6]	A	T	1.816e^-4	0.448	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_inv
2R	8442525	2R_8442525_SNP [dm3] 2R_12555020_SNP [dm6]	A	T	1.816e^-4	0.448	INTRON fra	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Kr
3R	16744214	3R_16744214_SNP [dm3] 3R_20918492_SNP [dm6]	A	C	1.825e^-4	0.448	INTRON CG31191 & 1 other	TF binding site BDTNP1_TFBS_prd
3L	6742463	3L_6742463_SNP [dm3] 3L_6749363_SNP [dm6]	G	T	1.828e^-4	0.448	SYNONYMOUS_CODING velo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10714822	2L_10714822_SNP [dm3] 2L_10714822_SNP [dm6]	T	C	1.829e^-4	0.448	INTERGENIC
3R	19555451	3R_19555451_SNP [dm3] 3R_23729729_SNP [dm6]	G	A	1.830e^-4	0.448	DOWNSTREAM RNaseMRP:RNA INTRON CG10365	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26323742	3R_26323742_SNP [dm3] 3R_30498020_SNP [dm6]	G	A	1.831e^-4	0.448	SPLICE_SITE_REGION PH4alphaNE1 SYNONYMOUS_CODING PH4alphaNE1	TF binding site mE1_TFBS_chinmo
X	19689451	X_19689451_SNP [dm3] X_19795418_SNP [dm6]	A	G	1.834e^-4	0.448	INTERGENIC
3L	5338381	3L_5338381_SNP [dm3] 3L_5345281_SNP [dm6]	G	C	1.837e^-4	0.448	NON_SYNONYMOUS_CODING lama
3L	17096177	3L_17096177_SNP [dm3] 3L_17103077_SNP [dm6]	G	A	1.838e^-4	0.448	INTRON Rbp6
2L	2122140	2L_2122140_SNP [dm3] 2L_2122140_SNP [dm6]	G	A	1.841e^-4	0.448	INTERGENIC
2L	14972582	2L_14972582_SNP [dm3] 2L_14972582_SNP [dm6]	C	A	1.842e^-4	0.448	UPSTREAM CG42313 INTERGENIC	TF binding site mE1_TFBS_bab1
3R	13074381	3R_13074381_INS [dm3] 3R_17248659_INS [dm6]	C	CTATGC	1.849e^-4	0.448	UPSTREAM beat-IIb INTRON beat-IIb
2R	15892491	2R_15892491_SNP [dm3] 2R_20004986_SNP [dm6]	C	G	1.850e^-4	0.448	UTR_5_PRIME CG16898
3R	21883273	3R_21883273_SNP [dm3] 3R_26057551_SNP [dm6]	T	G	1.853e^-4	0.448	SYNONYMOUS_CODING CG14550 UTR_3_PRIME CG42498 DOWNSTREAM CG14543 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	22417929	3L_22417929_SNP [dm3] 3L_22424829_SNP [dm6]	G	A	1.859e^-4	0.448	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	23935036	3R_23935036_SNP [dm3] 3R_28109314_SNP [dm6]	C	G	1.859e^-4	0.448	INTERGENIC
2L	10635256	2L_10635256_SNP [dm3] 2L_10635256_SNP [dm6]	A	G	1.861e^-4	0.448	INTRON CG7329
2L	7047850	2L_7047850_SNP [dm3] 2L_7047850_SNP [dm6]	T	C	1.862e^-4	0.448	INTRON milt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
3R	4178268	3R_4178268_SNP [dm3] 3R_8352546_SNP [dm6]	T	A	1.863e^-4	0.448	UTR_3_PRIME Atg13
3L	16443129	3L_16443129_SNP [dm3] 3L_16450029_SNP [dm6]	T	C	1.871e^-4	0.45	INTRON CG33158 & 1 other
2L	1940687	2L_1940687_SNP [dm3] 2L_1940687_SNP [dm6]	A	C	1.881e^-4	0.45	SYNONYMOUS_CODING CG7337 INTRON CG7337
2L	2276236	2L_2276236_SNP [dm3] 2L_2276236_SNP [dm6]	C	T	1.883e^-4	0.45	INTRON CR43753 EXON CR43753
2L	962257	2L_962257_SNP [dm3] 2L_962257_SNP [dm6]	G	A	1.885e^-4	0.45	INTERGENIC
X	18092808	X_18092808_SNP [dm3] X_18198775_SNP [dm6]	A	T	1.885e^-4	0.45	INTRON Frq2
3L	6960123	3L_6960123_SNP [dm3] 3L_6967023_SNP [dm6]	T	C	1.886e^-4	0.45	SYNONYMOUS_CODING CG10064	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	17338146	X_17338146_SNP [dm3] X_17444113_SNP [dm6]	A	G	1.892e^-4	0.45	UPSTREAM CG12994 INTERGENIC
3L	15187891	3L_15187891_SNP [dm3] 3L_15194791_SNP [dm6]	A	T	1.893e^-4	0.45	INTERGENIC
2R	10476058	2R_10476058_SNP [dm3] 2R_14588553_SNP [dm6]	C	G	1.898e^-4	0.45	DOWNSTREAM ttv INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	4278875	3L_4278875_SNP [dm3] 3L_4278875_SNP [dm6]	A	G	1.899e^-4	0.45	SYNONYMOUS_CODING CG1311	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	11280965	3L_11280965_SNP [dm3] 3L_11287865_SNP [dm6]	C	T	1.901e^-4	0.45	DOWNSTREAM CG6175 INTERGENIC
3R	26036193	3R_26036193_SNP [dm3] 3R_30210471_SNP [dm6]	T	A	1.902e^-4	0.45	UPSTREAM CecA1 DOWNSTREAM Anp INTERGENIC	regulatory region REDfly_CRMs
2L	12569224	2L_12569224_DEL [dm3] 2L_12569224_DEL [dm6]	GAAAAGAAAG	G	1.905e^-4	0.451	INTERGENIC
3R	15232873	3R_15232873_SNP [dm3] 3R_19407151_SNP [dm6]	C	G	1.917e^-4	0.452	DOWNSTREAM CG5316 INTERGENIC
3L	16316088	3L_16316088_SNP [dm3] 3L_16322988_SNP [dm6]	C	T	1.919e^-4	0.452	UPSTREAM CG13059 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25172248	3R_25172248_SNP [dm3] 3R_29346526_SNP [dm6]	C	T	1.921e^-4	0.452	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	14317672	3R_14317672_SNP [dm3] 3R_18491950_SNP [dm6]	G	A	1.921e^-4	0.452	INTRON fru	TF binding site BDTNP1_TFBS_twi
2L	2453139	2L_2453139_SNP [dm3] 2L_2453139_SNP [dm6]	G	C	1.926e^-4	0.452	INTRON dpp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	21111671	3L_21111671_INS [dm3] 3L_21118571_INS [dm6]	T	TT	1.928e^-4	0.452	INTRON ko	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	15167387	2L_15167387_SNP [dm3] 2L_15167387_SNP [dm6]	C	T	1.929e^-4	0.452	SYNONYMOUS_CODING CG4168
3R	23181310	3R_23181310_SNP [dm3] 3R_27355588_SNP [dm6]	G	C	1.931e^-4	0.452	INTRON CG42534
3R	822236	3R_822236_DEL [dm3] 3R_4996514_DEL [dm6]	ATAAA	A	1.932e^-4	0.452	INTRON CG2022	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	1650878	3L_1650878_SNP [dm3] 3L_1650878_SNP [dm6]	G	T	1.936e^-4	0.452	DOWNSTREAM CG7967 INTRON CG13920
2L	10147037	2L_10147037_SNP [dm3] 2L_10147037_SNP [dm6]	A	G	1.941e^-4	0.452	UTR_5_PRIME CG4839 INTRON CG44153	TF binding site mE1_TFBS_cad
X	561830	X_561830_SNP [dm3] X_667797_SNP [dm6]	C	G	1.950e^-4	0.452	INTERGENIC
2L	4813276	2L_4813276_SNP [dm3] 2L_4813276_SNP [dm6]	T	C	1.956e^-4	0.452	UTR_5_PRIME CG15629
2L	4813285	2L_4813285_SNP [dm3] 2L_4813285_SNP [dm6]	A	C	1.956e^-4	0.452	UTR_5_PRIME CG15629
3R	18295017	3R_18295017_SNP [dm3] 3R_22469295_SNP [dm6]	A	G	1.962e^-4	0.452	UTR_5_PRIME Nrx-1 UPSTREAM Nrx-1 INTRON Nrx-1
3R	18295020	3R_18295020_SNP [dm3] 3R_22469298_SNP [dm6]	C	T	1.962e^-4	0.452	START_GAINED Nrx-1 UTR_5_PRIME Nrx-1 UPSTREAM Nrx-1 INTRON Nrx-1
2L	3041357	2L_3041357_SNP [dm3] 2L_3041357_SNP [dm6]	A	C	1.972e^-4	0.452	NON_SYNONYMOUS_CODING CG17221
2L	2276015	2L_2276015_SNP [dm3] 2L_2276015_SNP [dm6]	G	C	1.974e^-4	0.452	INTRON CR43753 EXON CR43753
2L	1192717	2L_1192717_DEL [dm3] 2L_1192717_DEL [dm6]	AC	A	1.975e^-4	0.452	INTRON CG5001	TF binding site mE1_TFBS_cad
2L	1192723	2L_1192723_DEL [dm3] 2L_1192723_DEL [dm6]	TGTGGTCATGTTCCTCCCAA...	C	1.975e^-4	0.452	INTRON CG5001	TF binding site mE1_TFBS_cad
2L	1192772	2L_1192772_DEL [dm3] 2L_1192772_DEL [dm6]	AGAGCCC	A	1.975e^-4	0.452	INTRON CG5001	TF binding site mE1_TFBS_cad
2L	1192780	2L_1192780_SNP [dm3] 2L_1192780_SNP [dm6]	G	C	1.975e^-4	0.452	INTRON CG5001	TF binding site mE1_TFBS_cad
2L	1291923	2L_1291923_SNP [dm3] 2L_1291923_SNP [dm6]	T	A	1.976e^-4	0.452	INTRON robo3
2L	4626521	2L_4626521_SNP [dm3] 2L_4626521_SNP [dm6]	G	A	1.977e^-4	0.452	INTERGENIC
3L	21201708	3L_21201708_SNP [dm3] 3L_21208608_SNP [dm6]	T	C	1.983e^-4	0.452	SYNONYMOUS_CODING CG10510 DOWNSTREAM CG10512	TF binding site mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	3178554	2L_3178554_SNP [dm3] 2L_3178554_SNP [dm6]	A	T	1.983e^-4	0.452	INTRON CG34393
3R	17673231	3R_17673231_SNP [dm3] 3R_21847509_SNP [dm6]	T	C	1.983e^-4	0.452	UPSTREAM Gr93d DOWNSTREAM CR44087 INTERGENIC
X	18334778	X_18334778_SNP [dm3] X_18440745_SNP [dm6]	C	G	1.986e^-4	0.452	UPSTREAM CG32548 DOWNSTREAM CG43841 INTERGENIC
3L	7517078	3L_7517078_SNP [dm3] 3L_7523978_SNP [dm6]	T	C	1.989e^-4	0.452	INTRON ltl
3R	8373870	3R_8373870_SNP [dm3] 3R_12548148_SNP [dm6]	T	G	1.990e^-4	0.452	UTR_5_PRIME Octbeta3R
2R	7748622	2R_7748622_SNP [dm3] 2R_11861117_SNP [dm6]	T	G	1.993e^-4	0.452	UTR_3_PRIME Mtor UPSTREAM CG34230 DOWNSTREAM Mtor
3L	12606299	3L_12606299_SNP [dm3] 3L_12613199_SNP [dm6]	A	T	1.994e^-4	0.452	INTRON caup	silencer mE1_HDAC_PRE
3L	2145664	3L_2145664_SNP [dm3] 3L_2145664_SNP [dm6]	T	C	1.996e^-4	0.452	INTRON zormin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13642019	2R_13642019_SNP [dm3] 2R_17754514_SNP [dm6]	C	T	1.996e^-4	0.452	NON_SYNONYMOUS_CODING CG6385	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2436718	2L_2436718_SNP [dm3] 2L_2436718_SNP [dm6]	G	A	2.001e^-4	0.453	INTRON dpp
3L	18274588	3L_18274588_SNP [dm3] 3L_18281488_SNP [dm6]	G	A	2.011e^-4	0.454	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	27137491	3R_27137491_SNP [dm3] 3R_31311769_SNP [dm6]	C	T	2.014e^-4	0.455	UTR_5_PRIME CG34347 INTRON CG34347	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	6944376	3L_6944376_SNP [dm3] 3L_6951276_SNP [dm6]	C	T	2.022e^-4	0.455	SYNONYMOUS_CODING CG10077 DOWNSTREAM CG10077
3L	5206325	3L_5206325_SNP [dm3] 3L_5213225_SNP [dm6]	A	G	2.024e^-4	0.455	INTRON shep	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25177812	3R_25177812_SNP [dm3] 3R_29352090_SNP [dm6]	C	T	2.026e^-4	0.455	INTERGENIC
3R	9969702	3R_9969702_DEL [dm3] 3R_14143980_DEL [dm6]	TCAC	T	2.031e^-4	0.455	INTERGENIC
X	13001975	X_13001975_SNP [dm3] X_13107942_SNP [dm6]	T	C	2.033e^-4	0.455	INTRON CG43313 & 1 other
X	3858500	X_3858500_SNP [dm3] X_3964467_SNP [dm6]	T	C	2.033e^-4	0.455	NON_SYNONYMOUS_CODING lva DOWNSTREAM CG6428	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23920900	3R_23920900_SNP [dm3] 3R_28095178_SNP [dm6]	C	T	2.034e^-4	0.455	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12453242	2L_12453242_SNP [dm3] 2L_12453242_SNP [dm6]	A	G	2.043e^-4	0.457	UTR_5_PRIME CG5418 UPSTREAM CR17024	TF binding site mE1_TFBS_cad
2L	14976380	2L_14976380_SNP [dm3] 2L_14976380_SNP [dm6]	A	G	2.048e^-4	0.457	INTRON mol
3L	4840315	3L_4840315_SNP [dm3] 3L_4840315_SNP [dm6]	C	G	2.052e^-4	0.457	UPSTREAM CG13707 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	18704747	3R_18704747_SNP [dm3] 3R_22879025_SNP [dm6]	G	T	2.053e^-4	0.457	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	17367081	3R_17367081_SNP [dm3] 3R_21541359_SNP [dm6]	A	C	2.055e^-4	0.457	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Kr
3R	8560814	3R_8560814_SNP [dm3] 3R_12735092_SNP [dm6]	C	G	2.059e^-4	0.457	INTERGENIC
2R	1861384	2R_1861384_SNP [dm3] 2R_5973879_SNP [dm6]	C	T	2.061e^-4	0.457	SYNONYMOUS_CODING BubR1 DOWNSTREAM mle	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	9353710	3L_9353710_SNP [dm3] 3L_9360610_SNP [dm6]	A	T	2.062e^-4	0.457	UTR_5_PRIME CG34455 DOWNSTREAM CG32039	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13862457	2L_13862457_SNP [dm3] 2L_13862457_SNP [dm6]	T	C	2.067e^-4	0.457	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr
3R	14054598	3R_14054598_SNP [dm3] 3R_18228876_SNP [dm6]	T	C	2.071e^-4	0.457	DOWNSTREAM Mdh2 INTERGENIC
X	912899	X_912899_SNP [dm3] X_1018866_SNP [dm6]	C	T	2.076e^-4	0.457	DOWNSTREAM CG32814 INTRON su_w[a]_ & 1 other
3L	4278670	3L_4278670_SNP [dm3] 3L_4278670_SNP [dm6]	T	C	2.077e^-4	0.457	DOWNSTREAM CG1273 INTRON CG1311	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4278803	3L_4278803_SNP [dm3] 3L_4278803_SNP [dm6]	T	C	2.077e^-4	0.457	SYNONYMOUS_CODING CG1311	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	4279272	3L_4279272_SNP [dm3] 3L_4279272_SNP [dm6]	C	G	2.077e^-4	0.457	SYNONYMOUS_CODING CG1311	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	6836638	2L_6836638_SNP [dm3] 2L_6836638_SNP [dm6]	A	T	2.098e^-4	0.459	INTRON sens-2
2L	6836643	2L_6836643_DEL [dm3] 2L_6836643_DEL [dm6]	AT	A	2.098e^-4	0.459	INTRON sens-2
3R	23920457	3R_23920457_INS [dm3] 3R_28094735_INS [dm6]	G	GA	2.102e^-4	0.459	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	27132534	3R_27132534_SNP [dm3] 3R_31306812_SNP [dm6]	C	A	2.103e^-4	0.459	INTERGENIC
3L	14276573	3L_14276573_SNP [dm3] 3L_14283473_SNP [dm6]	C	T	2.103e^-4	0.459	INTRON fz	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17684674	3L_17684674_SNP [dm3] 3L_17691574_SNP [dm6]	G	A	2.108e^-4	0.459	INTRON Ccn
2R	3576871	2R_3576871_SNP [dm3] 2R_7689366_SNP [dm6]	C	G	2.110e^-4	0.459	INTRON CG1399
2L	2436690	2L_2436690_SNP [dm3] 2L_2436690_SNP [dm6]	C	T	2.111e^-4	0.459	INTRON dpp
2L	22133171	2L_22133171_SNP [dm3] 2L_22133171_SNP [dm6]	C	A	2.114e^-4	0.459	DOWNSTREAM CR43241 INTRON CG42748	TF binding site BDTNP1_TFBS_dl
X	528657	X_528657_SNP [dm3] X_634624_SNP [dm6]	C	T	2.116e^-4	0.459	SYNONYMOUS_CODING Dredd DOWNSTREAM l_1_1Bi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
3L	14404940	3L_14404940_SNP [dm3] 3L_14411840_SNP [dm6]	G	T	2.117e^-4	0.459	DOWNSTREAM bbg INTRON CG3919
2R	1865271	2R_1865271_SNP [dm3] 2R_5977766_SNP [dm6]	A	C	2.117e^-4	0.459	INTRON mle
3R	23910477	3R_23910477_SNP [dm3] 3R_28084755_SNP [dm6]	T	C	2.119e^-4	0.459	UTR_3_PRIME CG34362 INTRON CG34362
2R	1842009	2R_1842009_SNP [dm3] 2R_5954504_SNP [dm6]	T	C	2.132e^-4	0.46	INTERGENIC
2R	1866150	2R_1866150_SNP [dm3] 2R_5978645_SNP [dm6]	C	G	2.132e^-4	0.46	NON_SYNONYMOUS_CODING mle UTR_5_PRIME mle	TF binding site mE1_TFBS_cad
2L	6832674	2L_6832674_DEL [dm3] 2L_6832674_DEL [dm6]	TAATAAGA	T	2.132e^-4	0.46	INTRON sens-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	12167991	3L_12167991_SNP [dm3] 3L_12174891_SNP [dm6]	C	A	2.136e^-4	0.46	INTRON Rh7
3L	4278709	3L_4278709_SNP [dm3] 3L_4278709_SNP [dm6]	A	C	2.138e^-4	0.46	DOWNSTREAM CG1273 INTRON CG1311	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18704643	3R_18704643_SNP [dm3] 3R_22878921_SNP [dm6]	A	C	2.143e^-4	0.46	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	3644910	3R_3644910_SNP [dm3] 3R_7819188_SNP [dm6]	C	G	2.143e^-4	0.46	INTRON CG34384
3L	16877259	3L_16877259_SNP [dm3] 3L_16884159_SNP [dm6]	T	A	2.145e^-4	0.46	INTRON Lmpt
3R	7943898	3R_7943898_SNP [dm3] 3R_12118176_SNP [dm6]	C	T	2.147e^-4	0.46	INTERGENIC
2L	792780	2L_792780_SNP [dm3] 2L_792780_SNP [dm6]	A	T	2.151e^-4	0.46	INTERGENIC
3L	7255811	3L_7255811_SNP [dm3] 3L_7262711_SNP [dm6]	T	A	2.158e^-4	0.46	INTRON CG14830
2L	12844254	2L_12844254_SNP [dm3] 2L_12844254_SNP [dm6]	C	G	2.161e^-4	0.46	INTERGENIC
3R	12377918	3R_12377918_SNP [dm3] 3R_16552196_SNP [dm6]	G	A	2.166e^-4	0.46	INTRON CG42342	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	975919	2L_975919_SNP [dm3] 2L_975919_SNP [dm6]	T	C	2.169e^-4	0.46	INTERGENIC	TF binding site BDTNP1_TFBS_hb
3R	23240563	3R_23240563_SNP [dm3] 3R_27414841_SNP [dm6]	C	T	2.171e^-4	0.46	INTRON side
2L	2422394	2L_2422394_SNP [dm3] 2L_2422394_SNP [dm6]	G	C	2.172e^-4	0.46	SYNONYMOUS_CODING CG9886
2R	19289954	2R_19289954_SNP [dm3] 2R_23402431_SNP [dm6]	A	T	2.174e^-4	0.46	UPSTREAM CG3520 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	16443139	3L_16443139_SNP [dm3] 3L_16450039_SNP [dm6]	A	C	2.175e^-4	0.46	INTRON CG33158 & 1 other
3L	1651073	3L_1651073_SNP [dm3] 3L_1651073_SNP [dm6]	C	T	2.181e^-4	0.46	SYNONYMOUS_CODING CG13920 DOWNSTREAM CG7967
2L	11403319	2L_11403319_SNP [dm3] 2L_11403319_SNP [dm6]	C	T	2.198e^-4	0.46	INTERGENIC	regulatory region REDfly_CRMs
2L	5157117	2L_5157117_SNP [dm3] 2L_5157117_SNP [dm6]	C	T	2.207e^-4	0.46	INTRON Msp300
2L	3746099	2L_3746099_SNP [dm3] 2L_3746099_SNP [dm6]	C	T	2.215e^-4	0.46	INTRON CG10019	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3505081	2L_3505081_SNP [dm3] 2L_3505081_SNP [dm6]	C	A	2.218e^-4	0.46	INTRON tim	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18292475	3R_18292475_SNP [dm3] 3R_22466753_SNP [dm6]	A	T	2.220e^-4	0.46	DOWNSTREAM CG5377 & 2 others INTERGENIC	TF binding site mE1_TFBS_cad
2L	782203	2L_782203_SNP [dm3] 2L_782203_SNP [dm6]	G	A	2.222e^-4	0.46	INTRON Gr21a	TF binding site mE1_TFBS_cad
3R	19550507	3R_19550507_SNP [dm3] 3R_23724785_SNP [dm6]	T	C	2.222e^-4	0.46	INTRON CG10365
3L	9761113	3L_9761113_SNP [dm3] 3L_9768013_SNP [dm6]	C	T	2.225e^-4	0.46	INTRON CG8177
2R	19054627	2R_19054627_SNP [dm3] 2R_23167104_SNP [dm6]	G	T	2.228e^-4	0.46	INTRON CG34371	TF binding site mE1_TFBS_HSA
2L	13675692	2L_13675692_SNP [dm3] 2L_13675692_SNP [dm6]	T	A	2.231e^-4	0.46	INTERGENIC
2L	13675877	2L_13675877_SNP [dm3] 2L_13675877_SNP [dm6]	C	T	2.231e^-4	0.46	DOWNSTREAM CG31814 INTERGENIC
2L	13679498	2L_13679498_SNP [dm3] 2L_13679498_SNP [dm6]	C	T	2.231e^-4	0.46	INTRON CG31814
2L	13679809	2L_13679809_SNP [dm3] 2L_13679809_SNP [dm6]	G	T	2.231e^-4	0.46	INTRON CG31814	TF binding site BDTNP1_TFBS_twi
2L	13679813	2L_13679813_SNP [dm3] 2L_13679813_SNP [dm6]	T	C	2.231e^-4	0.46	INTRON CG31814	TF binding site BDTNP1_TFBS_twi
2L	13680767	2L_13680767_SNP [dm3] 2L_13680767_SNP [dm6]	T	A	2.231e^-4	0.46	INTRON CG31814	TF binding site BDTNP1_TFBS_twi
2R	10886428	2R_10886428_SNP [dm3] 2R_14998923_SNP [dm6]	C	G	2.231e^-4	0.46	INTERGENIC	insulator Insulator_Class_II.mE01
3R	22626097	3R_22626097_SNP [dm3] 3R_26800375_SNP [dm6]	G	T	2.231e^-4	0.46	INTRON Tl
3R	14593029	3R_14593029_SNP [dm3] 3R_18767307_SNP [dm6]	T	A	2.232e^-4	0.46	INTRON CG7720
3R	27132945	3R_27132945_SNP [dm3] 3R_31307223_SNP [dm6]	T	C	2.236e^-4	0.46	INTERGENIC
3L	8236404	3L_8236404_SNP [dm3] 3L_8243304_SNP [dm6]	A	G	2.236e^-4	0.46	INTRON Dscam4
2L	19125423	2L_19125423_SNP [dm3] 2L_19125423_SNP [dm6]	A	G	2.238e^-4	0.46	SYNONYMOUS_CODING l_2_37Cb	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	16877268	3L_16877268_DEL [dm3] 3L_16884168_DEL [dm6]	TTCA	T	2.240e^-4	0.46	INTRON Lmpt
3L	16877275	3L_16877275_SNP [dm3] 3L_16884175_SNP [dm6]	C	T	2.240e^-4	0.46	INTRON Lmpt
3R	19895495	3R_19895495_DEL [dm3] 3R_24069773_DEL [dm6]	GCAACAATATG...	G	2.241e^-4	0.46	INTRON 4EHP
X	6119409	X_6119409_SNP [dm3] X_6225376_SNP [dm6]	T	G	2.244e^-4	0.46	UPSTREAM sqh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	12510449	2L_12510449_SNP [dm3] 2L_12510449_SNP [dm6]	A	T	2.251e^-4	0.46	INTRON bun	TF binding site mE1_TFBS_h mE1_TFBS_HSA
2L	3512355	2L_3512355_SNP [dm3] 2L_3512355_SNP [dm6]	C	T	2.254e^-4	0.46	INTRON CG33123	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	7778190	X_7778190_SNP [dm3] X_7884157_SNP [dm6]	A	T	2.258e^-4	0.46	UPSTREAM Ir7g & 1 other INTERGENIC
3R	23240605	3R_23240605_SNP [dm3] 3R_27414883_SNP [dm6]	G	A	2.261e^-4	0.46	INTRON side
2L	2278600	2L_2278600_SNP [dm3] 2L_2278600_SNP [dm6]	G	A	2.261e^-4	0.46	INTRON CR43753 EXON CR43753
2L	16383992	2L_16383992_SNP [dm3] 2L_16383992_SNP [dm6]	A	G	2.261e^-4	0.46	INTERGENIC
X	3857762	X_3857762_SNP [dm3] X_3963729_SNP [dm6]	C	A	2.263e^-4	0.46	NON_SYNONYMOUS_CODING lva	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14773883	3R_14773883_SNP [dm3] 3R_18948161_SNP [dm6]	A	T	2.268e^-4	0.46	INTRON CG42613
3R	12990668	3R_12990668_SNP [dm3] 3R_17164946_SNP [dm6]	G	A	2.269e^-4	0.46	INTRON Mur89F
2L	3531243	2L_3531243_SNP [dm3] 2L_3531243_SNP [dm6]	T	A	2.277e^-4	0.46	UPSTREAM Spindly INTRON Che-13
2L	12704257	2L_12704257_SNP [dm3] 2L_12704257_SNP [dm6]	A	G	2.277e^-4	0.46	SYNONYMOUS_CODING CG5776 UPSTREAM spict	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	12704266	2L_12704266_SNP [dm3] 2L_12704266_SNP [dm6]	A	C	2.277e^-4	0.46	SYNONYMOUS_CODING CG5776 UPSTREAM spict	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	12606326	3L_12606326_SNP [dm3] 3L_12613226_SNP [dm6]	A	G	2.278e^-4	0.46	INTRON caup	silencer mE1_HDAC_PRE
2L	1523997	2L_1523997_SNP [dm3] 2L_1523997_SNP [dm6]	C	T	2.280e^-4	0.46	SYNONYMOUS_CODING Or22b	TF binding site BDTNP1_TFBS_dl
2R	7918722	2R_7918722_SNP [dm3] 2R_12031217_SNP [dm6]	T	G	2.280e^-4	0.46	NON_SYNONYMOUS_CODING pds5
3L	1090646	3L_1090646_SNP [dm3] 3L_1090646_SNP [dm6]	C	T	2.284e^-4	0.46	INTRON bab1	regulatory region REDfly_CRMs
3L	11503615	3L_11503615_SNP [dm3] 3L_11510515_SNP [dm6]	T	G	2.285e^-4	0.46	SYNONYMOUS_CODING CG33272 DOWNSTREAM Sgs7
2L	4861942	2L_4861942_SNP [dm3] 2L_4861942_SNP [dm6]	A	G	2.289e^-4	0.46	INTRON pog
3L	8726841	3L_8726841_SNP [dm3] 3L_8733741_SNP [dm6]	G	T	2.289e^-4	0.46	SYNONYMOUS_CODING Prm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19001685	3R_19001685_SNP [dm3] 3R_23175963_SNP [dm6]	C	G	2.296e^-4	0.46	INTRON Irk1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	18974871	3R_18974871_INS [dm3] 3R_23149149_INS [dm6]	G	GG	2.296e^-4	0.46	DOWNSTREAM unk INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4818421	2L_4818421_SNP [dm3] 2L_4818421_SNP [dm6]	G	T	2.302e^-4	0.46	UPSTREAM mir-4910 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	26028570	3R_26028570_SNP [dm3] 3R_30202848_SNP [dm6]	G	A	2.302e^-4	0.46	START_GAINED CG9743 UTR_5_PRIME CG9743	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	26028571	3R_26028571_SNP [dm3] 3R_30202849_SNP [dm6]	A	G	2.302e^-4	0.46	UTR_5_PRIME CG9743	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	26028573	3R_26028573_DEL [dm3] 3R_30202851_DEL [dm6]	ATACTTCGGTACTACGGAT...	C	2.302e^-4	0.46	UTR_5_PRIME CG9743	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	26029899	3R_26029899_SNP [dm3] 3R_30204177_SNP [dm6]	C	T	2.302e^-4	0.46	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	9467001	2R_9467001_SNP [dm3] 2R_13579496_SNP [dm6]	G	A	2.307e^-4	0.461	DOWNSTREAM CG6191 EXON CR44366	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	9780561	X_9780561_DEL [dm3] X_9886528_DEL [dm6]	GG	A	2.310e^-4	0.461	INTERGENIC
3R	23167731	3R_23167731_SNP [dm3] 3R_27342009_SNP [dm6]	A	G	2.312e^-4	0.461	INTRON CG42534
X	16300875	X_16300875_SNP [dm3] X_16406842_SNP [dm6]	G	A	2.316e^-4	0.461	UTR_5_PRIME CG4301 INTRON CG4301
3R	3678764	3R_3678764_SNP [dm3] 3R_7853042_SNP [dm6]	G	A	2.317e^-4	0.461	SYNONYMOUS_CODING CG34384
3L	1003555	3L_1003555_SNP [dm3] 3L_1003555_SNP [dm6]	T	G	2.334e^-4	0.461	SYNONYMOUS_CODING trio	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15078778	2L_15078778_SNP [dm3] 2L_15078778_SNP [dm6]	T	A	2.334e^-4	0.461	INTRON CG15270	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9347684	3L_9347684_SNP [dm3] 3L_9354584_SNP [dm6]	T	G	2.338e^-4	0.461	NON_SYNONYMOUS_CODING CG32040 INTRON UGP	TF binding site mE1_TFBS_HSA
2L	2111040	2L_2111040_SNP [dm3] 2L_2111040_SNP [dm6]	A	C	2.338e^-4	0.461	INTERGENIC
2L	3663788	2L_3663788_SNP [dm3] 2L_3663788_SNP [dm6]	C	A	2.338e^-4	0.461	INTRON CG34340
X	18901906	X_18901906_SNP [dm3] X_19007873_SNP [dm6]	A	T	2.341e^-4	0.461	INTRON CG43759
2L	12892123	2L_12892123_SNP [dm3] 2L_12892123_SNP [dm6]	G	A	2.344e^-4	0.461	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10334531	3L_10334531_SNP [dm3] 3L_10341431_SNP [dm6]	C	A	2.347e^-4	0.461	INTERGENIC
2L	7514742	2L_7514742_SNP [dm3] 2L_7514742_SNP [dm6]	G	T	2.349e^-4	0.461	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	23320228	3R_23320228_INS [dm3] 3R_27494506_INS [dm6]	T	TT	2.352e^-4	0.461	INTERGENIC
3R	23320230	3R_23320230_SNP [dm3] 3R_27494508_SNP [dm6]	G	T	2.352e^-4	0.461	INTERGENIC
3R	2897556	3R_2897556_SNP [dm3] 3R_7071834_SNP [dm6]	A	G	2.354e^-4	0.461	NON_SYNONYMOUS_CODING CG1104 DOWNSTREAM CG1965	TF binding site mE1_TFBS_sens
2L	4819797	2L_4819797_SNP [dm3] 2L_4819797_SNP [dm6]	C	T	2.354e^-4	0.461	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2879863	2L_2879863_SNP [dm3] 2L_2879863_SNP [dm6]	C	T	2.365e^-4	0.463	SYNONYMOUS_CODING betaggt-II DOWNSTREAM CG31950 & 1 other	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	23193472	3R_23193472_INS [dm3] 3R_27367750_INS [dm6]	G	GCTGCGAGCGTTGCAGGCAG...	2.368e^-4	0.463	INTRON CG42534 EXON CR43476	TF binding site mE1_TFBS_chinmo
3L	22597845	3L_22597845_SNP [dm3] 3L_22604745_SNP [dm6]	T	G	2.369e^-4	0.463	INTRON CG14459
2L	3302808	2L_3302808_SNP [dm3] 2L_3302808_SNP [dm6]	G	T	2.371e^-4	0.463	INTRON CG9663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3R	19128709	3R_19128709_SNP [dm3] 3R_23302987_SNP [dm6]	T	C	2.385e^-4	0.465	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	15037324	3R_15037324_SNP [dm3] 3R_19211602_SNP [dm6]	T	A	2.389e^-4	0.465	UPSTREAM cry INTERGENIC
2R	19428233	2R_19428233_SNP [dm3] 2R_23540710_SNP [dm6]	G	A	2.394e^-4	0.465	SYNONYMOUS_CODING ppk3 DOWNSTREAM Gr59e	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17675005	3R_17675005_SNP [dm3] 3R_21849283_SNP [dm6]	G	A	2.395e^-4	0.465	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2R	15861977	2R_15861977_SNP [dm3] 2R_19974472_SNP [dm6]	C	T	2.397e^-4	0.465	INTERGENIC
2L	7513038	2L_7513038_SNP [dm3] 2L_7513038_SNP [dm6]	T	A	2.408e^-4	0.467	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	11699664	3L_11699664_SNP [dm3] 3L_11706564_SNP [dm6]	A	T	2.414e^-4	0.468	INTRON CG11658
3R	11003827	3R_11003827_SNP [dm3] 3R_15178105_SNP [dm6]	A	G	2.418e^-4	0.468	UTR_3_PRIME Mf INTRON Gyc88E & 1 other
3R	14596160	3R_14596160_SNP [dm3] 3R_18770438_SNP [dm6]	A	G	2.429e^-4	0.469	INTRON CG7720
3R	25056758	3R_25056758_SNP [dm3] 3R_29231036_SNP [dm6]	G	C	2.432e^-4	0.469	INTRON CG15817	TF binding site mE1_TFBS_cad
2R	14113162	2R_14113162_SNP [dm3] 2R_18225657_SNP [dm6]	C	T	2.434e^-4	0.469	INTERGENIC
2R	10601371	2R_10601371_SNP [dm3] 2R_14713866_SNP [dm6]	T	C	2.436e^-4	0.469	UPSTREAM mspo INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	18656904	3R_18656904_SNP [dm3] 3R_22831182_SNP [dm6]	G	A	2.436e^-4	0.469	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	2371084	2L_2371084_SNP [dm3] 2L_2371084_SNP [dm6]	T	C	2.442e^-4	0.47	NON_SYNONYMOUS_CODING CG3597 DOWNSTREAM Axud1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16908651	2R_16908651_SNP [dm3] 2R_21021146_SNP [dm6]	G	C	2.452e^-4	0.47	INTRON RIC-3
3R	14170951	3R_14170951_DEL [dm3] 3R_18345229_DEL [dm6]	GA	G	2.454e^-4	0.47	INTRON CG15803
2L	12960810	2L_12960810_SNP [dm3] 2L_12960810_SNP [dm6]	T	A	2.458e^-4	0.47	INTERGENIC
3L	16315861	3L_16315861_SNP [dm3] 3L_16322761_SNP [dm6]	A	C	2.460e^-4	0.47	UPSTREAM CG13059 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	15171764	2L_15171764_SNP [dm3] 2L_15171764_SNP [dm6]	T	A	2.460e^-4	0.47	INTRON CG4168
2L	3012120	2L_3012120_SNP [dm3] 2L_3012120_SNP [dm6]	A	T	2.461e^-4	0.47	INTRON CG17265	TF binding site mE1_TFBS_inv
3R	23198583	3R_23198583_SNP [dm3] 3R_27372861_SNP [dm6]	C	A	2.467e^-4	0.47	DOWNSTREAM CG42534 INTERGENIC
3R	23198584	3R_23198584_SNP [dm3] 3R_27372862_SNP [dm6]	G	A	2.467e^-4	0.47	DOWNSTREAM CG42534 INTERGENIC
3L	14627217	3L_14627217_SNP [dm3] 3L_14634117_SNP [dm6]	C	G	2.476e^-4	0.47	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	6606094	3L_6606094_SNP [dm3] 3L_6612994_SNP [dm6]	T	C	2.478e^-4	0.47	UPSTREAM CG8398 INTRON CG8398
2R	9467060	2R_9467060_SNP [dm3] 2R_13579555_SNP [dm6]	T	C	2.481e^-4	0.47	DOWNSTREAM CG6191 EXON CR44366	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	8818766	3R_8818766_SNP [dm3] 3R_12993044_SNP [dm6]	C	T	2.485e^-4	0.47	SYNONYMOUS_CODING yellow-f DOWNSTREAM yellow-f2
3R	19301035	3R_19301035_SNP [dm3] 3R_23475313_SNP [dm6]	C	A	2.491e^-4	0.47	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	12606358	3L_12606358_SNP [dm3] 3L_12613258_SNP [dm6]	G	T	2.499e^-4	0.47	INTRON caup	silencer mE1_HDAC_PRE
3L	12606362	3L_12606362_SNP [dm3] 3L_12613262_SNP [dm6]	G	A	2.499e^-4	0.47	INTRON caup	silencer mE1_HDAC_PRE
3L	12606366	3L_12606366_SNP [dm3] 3L_12613266_SNP [dm6]	T	G	2.499e^-4	0.47	INTRON caup	silencer mE1_HDAC_PRE
2L	2738928	2L_2738928_SNP [dm3] 2L_2738928_SNP [dm6]	A	G	2.501e^-4	0.47	SYNONYMOUS_CODING CG31689
2R	20055135	2R_20055135_SNP [dm3] 2R_24167612_SNP [dm6]	G	T	2.502e^-4	0.47	START_GAINED CG3328 UTR_5_PRIME CG3328 INTRON CG3328	TF binding site mE1_TFBS_chinmo
2L	5386499	2L_5386499_SNP [dm3] 2L_5386499_SNP [dm6]	A	C	2.502e^-4	0.47	INTERGENIC
3L	18122205	3L_18122205_SNP [dm3] 3L_18129105_SNP [dm6]	A	G	2.512e^-4	0.47	UTR_3_PRIME Cyp312a1 DOWNSTREAM Cyp312a1
3R	19276024	3R_19276024_SNP [dm3] 3R_23450302_SNP [dm6]	G	T	2.514e^-4	0.47	INTRON CG4374
3L	763461	3L_763461_SNP [dm3] 3L_763461_SNP [dm6]	T	G	2.515e^-4	0.47	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	3545891	2L_3545891_SNP [dm3] 2L_3545891_SNP [dm6]	C	A	2.516e^-4	0.47	INTRON drm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
2L	4819844	2L_4819844_SNP [dm3] 2L_4819844_SNP [dm6]	C	T	2.519e^-4	0.47	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	4820137	2L_4820137_SNP [dm3] 2L_4820137_SNP [dm6]	A	G	2.519e^-4	0.47	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	4825649	2L_4825649_SNP [dm3] 2L_4825649_SNP [dm6]	C	T	2.519e^-4	0.47	NON_SYNONYMOUS_CODING CG15628
2L	4826539	2L_4826539_SNP [dm3] 2L_4826539_SNP [dm6]	C	G	2.519e^-4	0.47	SYNONYMOUS_CODING CG15628	TF binding site mE1_TFBS_cad
3R	24431865	3R_24431865_SNP [dm3] 3R_28606143_SNP [dm6]	A	T	2.520e^-4	0.47	UTR_5_PRIME CG9986 DOWNSTREAM Hrb98DE	TF binding site BDTNP1_TFBS_dl
3L	9758893	3L_9758893_SNP [dm3] 3L_9765793_SNP [dm6]	G	T	2.522e^-4	0.47	UTR_5_PRIME CG8177 INTRON CG8177
3R	23001676	3R_23001676_SNP [dm3] 3R_27175954_SNP [dm6]	T	A	2.524e^-4	0.47	INTRON Ser	TF binding site mE1_TFBS_chinmo
2R	10476060	2R_10476060_SNP [dm3] 2R_14588555_SNP [dm6]	T	A	2.529e^-4	0.471	DOWNSTREAM ttv INTERGENIC	TF binding site BDTNP1_TFBS_da
X	19627291	X_19627291_SNP [dm3] X_19733258_SNP [dm6]	C	T	2.534e^-4	0.471	SYNONYMOUS_CODING AP-1-2beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13447370	2L_13447370_SNP [dm3] 2L_13447370_SNP [dm6]	G	A	2.543e^-4	0.472	DOWNSTREAM Hsp60D INTRON CG42784
2L	8671878	2L_8671878_SNP [dm3] 2L_8671878_SNP [dm6]	C	T	2.543e^-4	0.472	UTR_3_PRIME Sema-1a UPSTREAM Glt
3R	1907530	3R_1907530_SNP [dm3] 3R_6081808_SNP [dm6]	T	A	2.546e^-4	0.472	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	10527398	2L_10527398_SNP [dm3] 2L_10527398_SNP [dm6]	A	T	2.548e^-4	0.472	UPSTREAM Lip4 INTERGENIC
3L	15178898	3L_15178898_SNP [dm3] 3L_15185798_SNP [dm6]	A	T	2.552e^-4	0.472	INTERGENIC
3R	17351172	3R_17351172_SNP [dm3] 3R_21525450_SNP [dm6]	C	T	2.552e^-4	0.472	INTRON CG7956	TF binding site mE1_TFBS_cad
2L	1643295	2L_1643295_SNP [dm3] 2L_1643295_SNP [dm6]	T	A	2.558e^-4	0.472	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	2453109	2L_2453109_SNP [dm3] 2L_2453109_SNP [dm6]	C	T	2.560e^-4	0.472	INTRON dpp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	16906556	2L_16906556_SNP [dm3] 2L_16906556_SNP [dm6]	A	G	2.561e^-4	0.472	INTRON tweek	TF binding site mE1_TFBS_sens
3R	14317690	3R_14317690_SNP [dm3] 3R_18491968_SNP [dm6]	A	C	2.574e^-4	0.474	INTRON fru	TF binding site BDTNP1_TFBS_twi
2L	17079758	2L_17079758_SNP [dm3] 2L_17079758_SNP [dm6]	T	C	2.576e^-4	0.474	INTERGENIC
3L	11503612	3L_11503612_SNP [dm3] 3L_11510512_SNP [dm6]	A	C	2.579e^-4	0.474	SYNONYMOUS_CODING CG33272 DOWNSTREAM Sgs7
2L	12960982	2L_12960982_SNP [dm3] 2L_12960982_SNP [dm6]	C	T	2.583e^-4	0.474	INTERGENIC
2L	20545956	2L_20545956_SNP [dm3] 2L_20545956_SNP [dm6]	A	T	2.585e^-4	0.474	INTERGENIC
3R	14324019	3R_14324019_SNP [dm3] 3R_18498297_SNP [dm6]	G	A	2.587e^-4	0.474	INTRON fru
2L	3837377	2L_3837377_SNP [dm3] 2L_3837377_SNP [dm6]	C	A	2.611e^-4	0.478	SYNONYMOUS_CODING slp2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	22855146	3L_22855146_SNP [dm3] 3L_22862046_SNP [dm6]	A	G	2.615e^-4	0.478	DOWNSTREAM CG13239 INTERGENIC	TF binding site BDTNP1_TFBS_sna
3R	25059210	3R_25059210_SNP [dm3] 3R_29233488_SNP [dm6]	G	A	2.632e^-4	0.479	NON_SYNONYMOUS_CODING CG15817	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	2616784	2L_2616784_SNP [dm3] 2L_2616784_SNP [dm6]	A	C	2.633e^-4	0.479	INTERGENIC
2L	4834625	2L_4834625_SNP [dm3] 2L_4834625_SNP [dm6]	C	G	2.635e^-4	0.479	SYNONYMOUS_CODING Ir25a UPSTREAM Ir25a DOWNSTREAM tank INTRON Ir25a
2R	19072664	2R_19072664_SNP [dm3] 2R_23185141_SNP [dm6]	A	G	2.638e^-4	0.479	SYNONYMOUS_CODING CG13539 INTRON CG34371	TF binding site mE1_TFBS_HSA mE1_TFBS_sens

By genomic position
Variant impact
Gene name

mn_Aggressi_Isol_ADJ phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results