DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.483e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.004008
In_2R_NS	0.077319

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	3.8041	0.0511
In_2L_t	8.2297	0.0163

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2198 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	5747125	2L_5747125_SNP [dm3] 2L_5747125_SNP [dm6]	G	A	1.972e^-6	0.718	SYNONYMOUS_CODING CG11029 INTRON CG11030	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	559628	X_559628_SNP [dm3] X_665595_SNP [dm6]	T	G	2.518e^-6	0.718	INTERGENIC	transposable element FlyBase
X	561877	X_561877_INS [dm3] X_667844_INS [dm6]	T	TTGT	3.198e^-6	0.718	INTERGENIC
3L	9166538	3L_9166538_SNP [dm3] 3L_9173438_SNP [dm6]	T	G	3.901e^-6	0.718	INTRON Rdl
3L	9170222	3L_9170222_SNP [dm3] 3L_9177122_SNP [dm6]	G	T	4.578e^-6	0.718	NON_SYNONYMOUS_CODING Rdl
3R	20444019	3R_20444019_SNP [dm3] 3R_24618297_SNP [dm6]	G	T	5.387e^-6	0.718	SYNONYMOUS_CODING mld	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1699511	3L_1699511_SNP [dm3] 3L_1699511_SNP [dm6]	G	A	5.578e^-6	0.718	INTRON CG7991	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	561814	X_561814_SNP [dm3] X_667781_SNP [dm6]	G	C	5.870e^-6	0.718	INTERGENIC
2L	20535175	2L_20535175_SNP [dm3] 2L_20535175_SNP [dm6]	C	G	5.957e^-6	0.718	INTERGENIC
3R	5045868	3R_5045868_DEL [dm3] 3R_9220146_DEL [dm6]	AGAATAA	A	6.250e^-6	0.718	INTRON pum	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	12699669	3L_12699669_SNP [dm3] 3L_12706569_SNP [dm6]	C	A	6.252e^-6	0.718	INTRON mirr	TF binding site BDTNP1_TFBS_da
3L	9355374	3L_9355374_SNP [dm3] 3L_9362274_SNP [dm6]	A	G	6.544e^-6	0.718	NON_SYNONYMOUS_CODING CG34456 DOWNSTREAM Klp67A & 1 other
3R	27111773	3R_27111773_SNP [dm3] 3R_31286051_SNP [dm6]	A	C	6.659e^-6	0.718	INTERGENIC
X	559663	X_559663_SNP [dm3] X_665630_SNP [dm6]	A	G	6.761e^-6	0.718	INTERGENIC	transposable element FlyBase
3L	9168818	3L_9168818_DEL [dm3] 3L_9175718_DEL [dm6]	ACAACTCAGCTA...	A	6.803e^-6	0.718	INTRON Rdl
2L	6019103	2L_6019103_SNP [dm3] 2L_6019103_SNP [dm6]	T	C	6.959e^-6	0.718	NON_SYNONYMOUS_CODING H2.0	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_sens
3L	13203554	3L_13203554_SNP [dm3] 3L_13210454_SNP [dm6]	A	T	7.379e^-6	0.718	UPSTREAM tRNA:CR32129 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12699724	3L_12699724_SNP [dm3] 3L_12706624_SNP [dm6]	T	A	7.481e^-6	0.718	INTRON mirr	TF binding site BDTNP1_TFBS_da
X	569303	X_569303_SNP [dm3] X_675270_SNP [dm6]	A	G	7.854e^-6	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	563131	X_563131_SNP [dm3] X_669098_SNP [dm6]	T	C	7.885e^-6	0.718	INTERGENIC
3R	14317672	3R_14317672_SNP [dm3] 3R_18491950_SNP [dm6]	G	A	9.066e^-6	0.745	INTRON fru	TF binding site BDTNP1_TFBS_twi
3R	23177373	3R_23177373_SNP [dm3] 3R_27351651_SNP [dm6]	T	A	9.503e^-6	0.745	INTRON CG42534
X	559604	X_559604_SNP [dm3] X_665571_SNP [dm6]	T	C	9.773e^-6	0.745	INTERGENIC	transposable element FlyBase
X	559630	X_559630_INS [dm3] X_665597_INS [dm6]	T	TGAATCTC	1.053e^-5	0.745	INTERGENIC	transposable element FlyBase
3L	11539460	3L_11539460_SNP [dm3] 3L_11546360_SNP [dm6]	C	T	1.057e^-5	0.745	INTRON Mob2
2R	16857695	2R_16857695_SNP [dm3] 2R_20970190_SNP [dm6]	A	C	1.089e^-5	0.745	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	569338	X_569338_SNP [dm3] X_675305_SNP [dm6]	G	A	1.109e^-5	0.745	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	16199736	2R_16199736_SNP [dm3] 2R_20312231_SNP [dm6]	T	C	1.241e^-5	0.745	INTRON CG13868	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12682419	3L_12682419_SNP [dm3] 3L_12689319_SNP [dm6]	G	C	1.248e^-5	0.745	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	560903	X_560903_SNP [dm3] X_666870_SNP [dm6]	A	G	1.279e^-5	0.745	INTERGENIC
X	561734	X_561734_DEL [dm3] X_667701_DEL [dm6]	GAATTACAAGCTAAACGTGA...	G	1.335e^-5	0.745	INTERGENIC
2R	9704862	2R_9704862_SNP [dm3] 2R_13817357_SNP [dm6]	A	G	1.337e^-5	0.745	SYNONYMOUS_CODING stj	TF binding site BDTNP1_TFBS_twi
X	561830	X_561830_SNP [dm3] X_667797_SNP [dm6]	C	G	1.405e^-5	0.745	INTERGENIC
2L	3481218	2L_3481218_SNP [dm3] 2L_3481218_SNP [dm6]	C	T	1.519e^-5	0.745	SYNONYMOUS_CODING CG15414	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	559535	X_559535_SNP [dm3] X_665502_SNP [dm6]	T	G	1.575e^-5	0.745	INTERGENIC	transposable element FlyBase
3L	1699505	3L_1699505_SNP [dm3] 3L_1699505_SNP [dm6]	G	T	1.580e^-5	0.745	INTRON CG7991	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	16009334	3R_16009334_SNP [dm3] 3R_20183612_SNP [dm6]	T	C	1.620e^-5	0.745	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14317712	3R_14317712_SNP [dm3] 3R_18491990_SNP [dm6]	G	C	1.625e^-5	0.745	INTRON fru
3R	27111842	3R_27111842_SNP [dm3] 3R_31286120_SNP [dm6]	A	C	1.691e^-5	0.745	INTERGENIC
X	559524	X_559524_SNP [dm3] X_665491_SNP [dm6]	A	G	1.695e^-5	0.745	INTERGENIC	transposable element FlyBase
2L	9765982	2L_9765982_SNP [dm3] 2L_9765982_SNP [dm6]	G	T	1.767e^-5	0.745	SYNONYMOUS_CODING ppk18 DOWNSTREAM und
3L	16145231	3L_16145231_SNP [dm3] 3L_16152131_SNP [dm6]	C	T	1.805e^-5	0.745	INTRON CG5151
X	573103	X_573103_SNP [dm3] X_679070_SNP [dm6]	C	G	1.811e^-5	0.745	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	2852345	2L_2852345_SNP [dm3] 2L_2852345_SNP [dm6]	G	A	1.897e^-5	0.745	INTRON CG3104
X	570408	X_570408_SNP [dm3] X_676375_SNP [dm6]	A	T	1.924e^-5	0.745	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	9704679	2R_9704679_SNP [dm3] 2R_13817174_SNP [dm6]	T	C	1.965e^-5	0.745	SYNONYMOUS_CODING stj	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	565423	X_565423_SNP [dm3] X_671390_SNP [dm6]	G	A	1.966e^-5	0.745	INTERGENIC
3L	5206340	3L_5206340_SNP [dm3] 3L_5213240_SNP [dm6]	A	C	1.973e^-5	0.745	INTRON shep
3R	26403224	3R_26403224_SNP [dm3] 3R_30577502_SNP [dm6]	C	A	2.038e^-5	0.745	UTR_3_PRIME tmod INTRON tmod
X	561268	X_561268_SNP [dm3] X_667235_SNP [dm6]	T	A	2.115e^-5	0.745	INTERGENIC
3L	10858300	3L_10858300_SNP [dm3] 3L_10865200_SNP [dm6]	C	A	2.144e^-5	0.745	INTRON tna	TF binding site BDTNP1_TFBS_dl
X	564281	X_564281_DEL [dm3] X_670248_DEL [dm6]	TGCGCCCAGTTTT...	T	2.184e^-5	0.745	INTERGENIC
X	560352	X_560352_SNP [dm3] X_666319_SNP [dm6]	A	G	2.234e^-5	0.745	INTERGENIC
3L	9357894	3L_9357894_SNP [dm3] 3L_9364794_SNP [dm6]	C	A	2.236e^-5	0.745	SYNONYMOUS_CODING CG4447 INTRON Klp67A	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	6179221	3L_6179221_SNP [dm3] 3L_6186121_SNP [dm6]	T	C	2.327e^-5	0.745	UTR_3_PRIME D19A DOWNSTREAM CG43293	TF binding site mE1_TFBS_cad
3L	1090646	3L_1090646_SNP [dm3] 3L_1090646_SNP [dm6]	C	T	2.363e^-5	0.745	INTRON bab1	regulatory region REDfly_CRMs
3L	12699672	3L_12699672_SNP [dm3] 3L_12706572_SNP [dm6]	T	G	2.438e^-5	0.745	INTRON mirr	TF binding site BDTNP1_TFBS_da
X	564852	X_564852_INS [dm3] X_670819_INS [dm6]	T	TT	2.531e^-5	0.745	INTERGENIC
3L	5206309	3L_5206309_SNP [dm3] 3L_5213209_SNP [dm6]	A	C	2.583e^-5	0.745	INTRON shep	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	5649135	3L_5649135_SNP [dm3] 3L_5656035_SNP [dm6]	C	A	2.584e^-5	0.745	INTRON lin-28	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	16009296	3R_16009296_INS [dm3] 3R_20183574_INS [dm6]	C	CA	2.634e^-5	0.745	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	574223	X_574223_SNP [dm3] X_680190_SNP [dm6]	G	T	2.662e^-5	0.745	INTERGENIC
X	13544884	X_13544884_INS [dm3] X_13650851_INS [dm6]	A	AT	2.696e^-5	0.745	INTRON NFAT	TF binding site mE1_TFBS_HSA
3R	26323796	3R_26323796_SNP [dm3] 3R_30498074_SNP [dm6]	C	A	2.745e^-5	0.745	INTRON PH4alphaNE1	TF binding site mE1_TFBS_chinmo
2R	9709385	2R_9709385_SNP [dm3] 2R_13821880_SNP [dm6]	T	G	2.857e^-5	0.745	UTR_5_PRIME fl_2_d INTRON fl_2_d
3L	8662324	3L_8662324_SNP [dm3] 3L_8669224_SNP [dm6]	C	A	2.904e^-5	0.745	INTERGENIC	regulatory region FlyBase TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
2L	5746522	2L_5746522_SNP [dm3] 2L_5746522_SNP [dm6]	T	C	2.961e^-5	0.745	SYNONYMOUS_CODING CG11029 INTRON CG11030	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	21138010	X_21138010_SNP [dm3] X_21266983_SNP [dm6]	T	C	3.029e^-5	0.745	INTRON CG32521
2R	13089762	2R_13089762_SNP [dm3] 2R_17202257_SNP [dm6]	G	A	3.043e^-5	0.745	INTERGENIC
2R	13089765	2R_13089765_SNP [dm3] 2R_17202260_SNP [dm6]	G	T	3.043e^-5	0.745	INTERGENIC
3L	805889	3L_805889_DEL [dm3] 3L_805889_DEL [dm6]	CA	C	3.068e^-5	0.745	INTERGENIC
2L	2827343	2L_2827343_SNP [dm3] 2L_2827343_SNP [dm6]	G	A	3.201e^-5	0.745	INTRON Duox
3R	21268751	3R_21268751_DEL [dm3] 3R_25443029_DEL [dm6]	TCCG	T	3.210e^-5	0.745	INTRON Fur1
2L	10746788	2L_10746788_SNP [dm3] 2L_10746788_SNP [dm6]	C	G	3.269e^-5	0.745	INTRON CG17124	TF binding site BDTNP1_TFBS_twi
X	563840	X_563840_SNP [dm3] X_669807_SNP [dm6]	T	G	3.280e^-5	0.745	INTERGENIC
X	566584	X_566584_SNP [dm3] X_672551_SNP [dm6]	G	C	3.308e^-5	0.745	INTERGENIC
3L	606777	3L_606777_SNP [dm3] 3L_606777_SNP [dm6]	C	G	3.330e^-5	0.745	UPSTREAM Reg-2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	25484621	3R_25484621_SNP [dm3] 3R_29658899_SNP [dm6]	T	C	3.373e^-5	0.745	UTR_5_PRIME Dop1R2
X	559552	X_559552_SNP [dm3] X_665519_SNP [dm6]	G	T	3.388e^-5	0.745	INTERGENIC	transposable element FlyBase
2R	18440073	2R_18440073_SNP [dm3] 2R_22552568_SNP [dm6]	A	T	3.460e^-5	0.745	DOWNSTREAM CG6018 INTRON px
3L	6578275	3L_6578275_SNP [dm3] 3L_6585175_SNP [dm6]	A	T	3.470e^-5	0.745	INTRON CG18769 & 1 other
2L	958456	2L_958456_SNP [dm3] 2L_958456_SNP [dm6]	A	G	3.474e^-5	0.745	DOWNSTREAM CG4341 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	15038076	2L_15038076_SNP [dm3] 2L_15038076_SNP [dm6]	T	C	3.512e^-5	0.745	NON_SYNONYMOUS_CODING CIAPIN1 DOWNSTREAM yellow-c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_sens
X	525143	X_525143_SNP [dm3] X_631110_SNP [dm6]	G	A	3.515e^-5	0.745	SYNONYMOUS_CODING l_1_1Bi	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3L	10545793	3L_10545793_SNP [dm3] 3L_10552693_SNP [dm6]	T	G	3.612e^-5	0.745	INTRON A2bp1
2R	9704742	2R_9704742_SNP [dm3] 2R_13817237_SNP [dm6]	T	C	3.749e^-5	0.745	SYNONYMOUS_CODING stj	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14317690	3R_14317690_SNP [dm3] 3R_18491968_SNP [dm6]	A	C	3.781e^-5	0.745	INTRON fru	TF binding site BDTNP1_TFBS_twi
3R	14170951	3R_14170951_DEL [dm3] 3R_18345229_DEL [dm6]	GA	G	3.781e^-5	0.745	INTRON CG15803
3L	12682391	3L_12682391_SNP [dm3] 3L_12689291_SNP [dm6]	A	C	3.796e^-5	0.745	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12103714	3L_12103714_SNP [dm3] 3L_12110614_SNP [dm6]	A	T	3.818e^-5	0.745	INTERGENIC
3L	10001087	3L_10001087_SNP [dm3] 3L_10007987_SNP [dm6]	G	A	3.896e^-5	0.745	INTRON dpr6
2L	4717413	2L_4717413_SNP [dm3] 2L_4717413_SNP [dm6]	A	T	3.948e^-5	0.745	INTRON CG34351	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	18182577	X_18182577_SNP [dm3] X_18288544_SNP [dm6]	A	T	4.045e^-5	0.745	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_inv
X	21138227	X_21138227_SNP [dm3] X_21267200_SNP [dm6]	A	T	4.052e^-5	0.745	INTRON CG32521
3L	5522754	3L_5522754_SNP [dm3] 3L_5529654_SNP [dm6]	C	T	4.074e^-5	0.745	UPSTREAM Lkr INTERGENIC
X	564349	X_564349_DEL [dm3] X_670316_DEL [dm6]	TCACCACAGGGGGCGGCGGG...	T	4.106e^-5	0.745	INTERGENIC
3R	10936838	3R_10936838_SNP [dm3] 3R_15111116_SNP [dm6]	T	C	4.145e^-5	0.745	INTRON CG42788
X	4042038	X_4042038_SNP [dm3] X_4148005_SNP [dm6]	T	C	4.152e^-5	0.745	INTRON Fas2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	4042041	X_4042041_SNP [dm3] X_4148008_SNP [dm6]	T	G	4.152e^-5	0.745	INTRON Fas2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	557374	X_557374_SNP [dm3] X_663341_SNP [dm6]	G	C	4.193e^-5	0.745	INTERGENIC	TF binding site mE1_TFBS_sens
3L	18386290	3L_18386290_DEL [dm3] 3L_18393190_DEL [dm6]	AC	A	4.242e^-5	0.745	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	10472436	2R_10472436_SNP [dm3] 2R_14584931_SNP [dm6]	T	C	4.252e^-5	0.745	UTR_3_PRIME ttv
2L	10635256	2L_10635256_SNP [dm3] 2L_10635256_SNP [dm6]	A	G	4.296e^-5	0.745	INTRON CG7329
X	556534	X_556534_SNP [dm3] X_662501_SNP [dm6]	A	G	4.312e^-5	0.745	INTERGENIC
X	18182509	X_18182509_SNP [dm3] X_18288476_SNP [dm6]	A	G	4.336e^-5	0.745	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	21107573	3L_21107573_INS [dm3] 3L_21114473_INS [dm6]	T	TTACACCTATAAGTGAAT...	4.337e^-5	0.745	INTRON ko	regulatory region REDfly_CRMs
2L	9766102	2L_9766102_SNP [dm3] 2L_9766102_SNP [dm6]	C	G	4.391e^-5	0.747	SYNONYMOUS_CODING ppk18 UPSTREAM CG4017 DOWNSTREAM und
3L	11535158	3L_11535158_SNP [dm3] 3L_11542058_SNP [dm6]	C	A	4.452e^-5	0.751	NON_SYNONYMOUS_CODING Mob2 INTRON Mob2
3R	14041805	3R_14041805_SNP [dm3] 3R_18216083_SNP [dm6]	G	C	4.655e^-5	0.752	UPSTREAM CG14314 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19953186	X_19953186_SNP [dm3] X_20059153_SNP [dm6]	T	C	4.685e^-5	0.752	INTRON Dop2R
X	16613763	X_16613763_SNP [dm3] X_16719730_SNP [dm6]	T	C	4.703e^-5	0.752	INTRON CG34325
X	16613764	X_16613764_DEL [dm3] X_16719731_DEL [dm6]	CTCTGTC	C	4.703e^-5	0.752	INTRON CG34325
X	8094070	X_8094070_SNP [dm3] X_8200037_SNP [dm6]	T	C	4.729e^-5	0.752	INTRON sdt
3R	19895495	3R_19895495_DEL [dm3] 3R_24069773_DEL [dm6]	GCAACAATATG...	G	4.783e^-5	0.752	INTRON 4EHP
X	568575	X_568575_SNP [dm3] X_674542_SNP [dm6]	T	A	4.802e^-5	0.752	INTERGENIC
3L	5911122	3L_5911122_SNP [dm3] 3L_5918022_SNP [dm6]	G	A	4.882e^-5	0.752	SYNONYMOUS_CODING CG10483 UPSTREAM CR45167 DOWNSTREAM CG13288
2L	4627471	2L_4627471_SNP [dm3] 2L_4627471_SNP [dm6]	C	T	4.922e^-5	0.752	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14044048	3R_14044048_SNP [dm3] 3R_18218326_SNP [dm6]	T	C	4.937e^-5	0.752	UTR_3_PRIME CG7183 DOWNSTREAM CG14314
3R	14317674	3R_14317674_SNP [dm3] 3R_18491952_SNP [dm6]	C	G	4.950e^-5	0.752	INTRON fru	TF binding site BDTNP1_TFBS_twi
2L	10147037	2L_10147037_SNP [dm3] 2L_10147037_SNP [dm6]	A	G	4.958e^-5	0.752	UTR_5_PRIME CG4839 INTRON CG44153	TF binding site mE1_TFBS_cad
3L	9639956	3L_9639956_SNP [dm3] 3L_9646856_SNP [dm6]	T	C	5.080e^-5	0.765	INTRON fry & 1 other
3R	27132533	3R_27132533_SNP [dm3] 3R_31306811_SNP [dm6]	C	T	5.173e^-5	0.772	INTERGENIC
2L	996469	2L_996469_SNP [dm3] 2L_996469_SNP [dm6]	C	T	5.371e^-5	0.777	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	575949	X_575949_SNP [dm3] X_681916_SNP [dm6]	C	T	5.376e^-5	0.777	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
X	574222	X_574222_SNP [dm3] X_680189_SNP [dm6]	A	G	5.445e^-5	0.777	INTERGENIC
2L	5854065	2L_5854065_SNP [dm3] 2L_5854065_SNP [dm6]	A	G	5.525e^-5	0.777	INTRON TrissinR
3R	14470907	3R_14470907_SNP [dm3] 3R_18645185_SNP [dm6]	C	T	5.546e^-5	0.777	NON_SYNONYMOUS_CODING qin
3L	8381942	3L_8381942_SNP [dm3] 3L_8388842_SNP [dm6]	T	G	5.608e^-5	0.777	NON_SYNONYMOUS_CODING ImpE1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	10524787	2L_10524787_SNP [dm3] 2L_10524787_SNP [dm6]	A	T	5.638e^-5	0.777	INTERGENIC
3R	23167731	3R_23167731_SNP [dm3] 3R_27342009_SNP [dm6]	A	G	5.675e^-5	0.777	INTRON CG42534
3L	10545787	3L_10545787_SNP [dm3] 3L_10552687_SNP [dm6]	T	A	5.716e^-5	0.777	INTRON A2bp1
X	569355	X_569355_INS [dm3] X_675322_INS [dm6]	A	ATATAATATATA...	5.789e^-5	0.777	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	21107517	3L_21107517_SNP [dm3] 3L_21114417_SNP [dm6]	A	C	5.796e^-5	0.777	INTRON ko	regulatory region REDfly_CRMs
X	9780561	X_9780561_DEL [dm3] X_9886528_DEL [dm6]	GG	A	5.850e^-5	0.777	INTERGENIC
X	523562	X_523562_SNP [dm3] X_629529_SNP [dm6]	G	C	5.881e^-5	0.777	UPSTREAM l_1_1Bi & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3L	16896235	3L_16896235_SNP [dm3] 3L_16903135_SNP [dm6]	A	G	5.889e^-5	0.777	NON_SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site mE1_TFBS_chinmo
2R	9705000	2R_9705000_SNP [dm3] 2R_13817495_SNP [dm6]	G	C	5.897e^-5	0.777	SYNONYMOUS_CODING stj
X	573284	X_573284_SNP [dm3] X_679251_SNP [dm6]	A	G	5.925e^-5	0.777	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9357734	3L_9357734_SNP [dm3] 3L_9364634_SNP [dm6]	A	G	5.980e^-5	0.777	NON_SYNONYMOUS_CODING CG4447 INTRON Klp67A	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	4795111	3L_4795111_SNP [dm3] 3L_4795111_SNP [dm6]	G	A	5.995e^-5	0.777	INTRON RhoGEF64C
X	564793	X_564793_SNP [dm3] X_670760_SNP [dm6]	T	C	6.166e^-5	0.777	INTERGENIC
X	574924	X_574924_DEL [dm3] X_680891_DEL [dm6]	CCCAAAAAAAAAATCGGCTT...	C	6.199e^-5	0.777	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_eve mE1_TFBS_HSA
X	557513	X_557513_SNP [dm3] X_663480_SNP [dm6]	T	G	6.225e^-5	0.777	INTERGENIC	TF binding site mE1_TFBS_sens
3R	27137723	3R_27137723_SNP [dm3] 3R_31312001_SNP [dm6]	T	C	6.247e^-5	0.777	INTRON CG34347
2R	18440070	2R_18440070_SNP [dm3] 2R_22552565_SNP [dm6]	T	A	6.303e^-5	0.777	DOWNSTREAM CG6018 INTRON px
2R	18440078	2R_18440078_SNP [dm3] 2R_22552573_SNP [dm6]	A	G	6.303e^-5	0.777	DOWNSTREAM CG6018 INTRON px
2R	18440082	2R_18440082_SNP [dm3] 2R_22552577_SNP [dm6]	T	A	6.303e^-5	0.777	DOWNSTREAM CG6018 INTRON px
3L	16317780	3L_16317780_SNP [dm3] 3L_16324680_SNP [dm6]	A	C	6.349e^-5	0.777	DOWNSTREAM CG13040 & 1 other INTERGENIC
X	521738	X_521738_SNP [dm3] X_627705_SNP [dm6]	A	G	6.371e^-5	0.777	UTR_3_PRIME CG17829 DOWNSTREAM RpL36
2L	14399917	2L_14399917_SNP [dm3] 2L_14399917_SNP [dm6]	A	C	6.423e^-5	0.777	INTRON elB
3L	5748464	3L_5748464_SNP [dm3] 3L_5755364_SNP [dm6]	C	T	6.443e^-5	0.777	INTRON Ubp64E
3L	5387607	3L_5387607_SNP [dm3] 3L_5394507_SNP [dm6]	T	C	6.487e^-5	0.777	INTERGENIC
2L	15043662	2L_15043662_SNP [dm3] 2L_15043662_SNP [dm6]	C	T	6.531e^-5	0.777	DOWNSTREAM Su_H_ INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11280965	3L_11280965_SNP [dm3] 3L_11287865_SNP [dm6]	C	T	6.607e^-5	0.777	DOWNSTREAM CG6175 INTERGENIC
3L	13257736	3L_13257736_SNP [dm3] 3L_13264636_SNP [dm6]	A	C	6.667e^-5	0.777	INTRON caps
2L	4712309	2L_4712309_SNP [dm3] 2L_4712309_SNP [dm6]	C	T	6.673e^-5	0.777	SYNONYMOUS_CODING CG34351
3R	19206166	3R_19206166_SNP [dm3] 3R_23380444_SNP [dm6]	C	T	6.702e^-5	0.777	SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_chinmo
3L	4751647	3L_4751647_SNP [dm3] 3L_4751647_SNP [dm6]	T	C	6.791e^-5	0.783	DOWNSTREAM CG12493 INTRON RhoGEF64C
3L	10001136	3L_10001136_SNP [dm3] 3L_10008036_SNP [dm6]	G	A	7.027e^-5	0.792	INTRON dpr6
X	571729	X_571729_SNP [dm3] X_677696_SNP [dm6]	C	T	7.155e^-5	0.792	INTERGENIC
2L	13718084	2L_13718084_SNP [dm3] 2L_13718084_SNP [dm6]	G	A	7.166e^-5	0.792	UPSTREAM CG31814 INTERGENIC
2L	2628627	2L_2628627_SNP [dm3] 2L_2628627_SNP [dm6]	A	G	7.190e^-5	0.792	UPSTREAM CR45705 INTERGENIC
2L	2628645	2L_2628645_SNP [dm3] 2L_2628645_SNP [dm6]	C	G	7.190e^-5	0.792	UPSTREAM CR45705 INTERGENIC
3R	23161247	3R_23161247_SNP [dm3] 3R_27335525_SNP [dm6]	G	A	7.226e^-5	0.792	INTERGENIC
3R	17763792	3R_17763792_SNP [dm3] 3R_21938070_SNP [dm6]	T	C	7.299e^-5	0.792	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	2817513	2L_2817513_SNP [dm3] 2L_2817513_SNP [dm6]	G	A	7.305e^-5	0.792	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23167728	3R_23167728_SNP [dm3] 3R_27342006_SNP [dm6]	A	C	7.317e^-5	0.792	INTRON CG42534
3R	18848584	3R_18848584_SNP [dm3] 3R_23022862_SNP [dm6]	G	T	7.429e^-5	0.792	INTRON lmd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4213519	3L_4213519_SNP [dm3] 3L_4213519_SNP [dm6]	A	T	7.488e^-5	0.792	UPSTREAM Cpr64Ac INTRON CG43367	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	18182582	X_18182582_SNP [dm3] X_18288549_SNP [dm6]	C	T	7.681e^-5	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_inv
X	568992	X_568992_SNP [dm3] X_674959_SNP [dm6]	A	T	7.707e^-5	0.792	INTERGENIC
3L	12274609	3L_12274609_SNP [dm3] 3L_12281509_SNP [dm6]	C	T	7.922e^-5	0.792	DOWNSTREAM CG10426 INTERGENIC
3R	16009305	3R_16009305_SNP [dm3] 3R_20183583_SNP [dm6]	C	T	8.075e^-5	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9540380	2L_9540380_INS [dm3] 2L_9540380_INS [dm6]	G	GT	8.100e^-5	0.792	UPSTREAM CG17855 DOWNSTREAM Oatp30B INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	18769874	3R_18769874_SNP [dm3] 3R_22944152_SNP [dm6]	T	C	8.118e^-5	0.792	INTRON klg
3L	16215972	3L_16215972_SNP [dm3] 3L_16222872_SNP [dm6]	G	A	8.126e^-5	0.792	DOWNSTREAM tRNA:CR32153 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	19953170	X_19953170_SNP [dm3] X_20059137_SNP [dm6]	T	G	8.191e^-5	0.792	INTRON Dop2R
X	3771502	X_3771502_DEL [dm3] X_3877469_DEL [dm6]	GTTCG	G	8.194e^-5	0.792	INTRON CG2930
X	5448848	X_5448848_INS [dm3] X_5554815_INS [dm6]	G	GG	8.258e^-5	0.792	INTRON Vsx2	TF binding site mE1_TFBS_cnc
3L	5206327	3L_5206327_SNP [dm3] 3L_5213227_SNP [dm6]	C	A	8.271e^-5	0.792	INTRON shep	TF binding site mE1_TFBS_HSA
3R	25668595	3R_25668595_SNP [dm3] 3R_29842873_SNP [dm6]	G	A	8.318e^-5	0.792	SPLICE_SITE_REGION Cad99C UTR_5_PRIME Cad99C INTRON Cad99C
X	21136996	X_21136996_SNP [dm3] X_21265969_SNP [dm6]	A	C	8.319e^-5	0.792	INTRON CG32521
3R	23167732	3R_23167732_SNP [dm3] 3R_27342010_SNP [dm6]	C	A	8.377e^-5	0.792	INTRON CG42534
3R	10629380	3R_10629380_SNP [dm3] 3R_14803658_SNP [dm6]	T	C	8.422e^-5	0.792	SYNONYMOUS_CODING CG14857 DOWNSTREAM btsz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14402784	2L_14402784_SNP [dm3] 2L_14402784_SNP [dm6]	G	A	8.436e^-5	0.792	INTRON elB
3L	807578	3L_807578_SNP [dm3] 3L_807578_SNP [dm6]	A	G	8.456e^-5	0.792	INTERGENIC
2L	10524776	2L_10524776_DEL [dm3] 2L_10524776_DEL [dm6]	AGTGC	A	8.471e^-5	0.792	INTERGENIC
X	573581	X_573581_SNP [dm3] X_679548_SNP [dm6]	A	T	8.482e^-5	0.792	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	3144520	2L_3144520_SNP [dm3] 2L_3144520_SNP [dm6]	T	G	8.493e^-5	0.792	UTR_5_PRIME toc DOWNSTREAM CG12400	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	9357498	3L_9357498_SNP [dm3] 3L_9364398_SNP [dm6]	T	C	8.508e^-5	0.792	UTR_5_PRIME CG4447 INTRON Klp67A	TF binding site mE1_TFBS_cad
X	5404783	X_5404783_SNP [dm3] X_5510750_SNP [dm6]	G	C	8.512e^-5	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	16015047	3R_16015047_SNP [dm3] 3R_20189325_SNP [dm6]	G	A	8.534e^-5	0.792	INTERGENIC
3L	784193	3L_784193_SNP [dm3] 3L_784193_SNP [dm6]	C	A	8.544e^-5	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12464217	2R_12464217_SNP [dm3] 2R_16576712_SNP [dm6]	A	G	8.635e^-5	0.792	UPSTREAM CG8317 INTERGENIC
2L	4638674	2L_4638674_SNP [dm3] 2L_4638674_SNP [dm6]	G	T	8.769e^-5	0.792	INTERGENIC
3L	1258964	3L_1258964_SNP [dm3] 3L_1258964_SNP [dm6]	G	A	8.828e^-5	0.792	INTRON CG9134
3R	19895317	3R_19895317_SNP [dm3] 3R_24069595_SNP [dm6]	C	T	8.870e^-5	0.792	INTRON 4EHP
2L	761162	2L_761162_SNP [dm3] 2L_761162_SNP [dm6]	G	T	9.056e^-5	0.792	UTR_3_PRIME GABA-B-R3
2R	7526839	2R_7526839_SNP [dm3] 2R_11639334_SNP [dm6]	T	A	9.063e^-5	0.792	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	9347789	3L_9347789_SNP [dm3] 3L_9354689_SNP [dm6]	T	C	9.068e^-5	0.792	SYNONYMOUS_CODING CG32040 INTRON UGP
2L	10524745	2L_10524745_SNP [dm3] 2L_10524745_SNP [dm6]	T	C	9.074e^-5	0.792	INTERGENIC
X	5404784	X_5404784_SNP [dm3] X_5510751_SNP [dm6]	A	T	9.230e^-5	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11034097	3L_11034097_SNP [dm3] 3L_11040997_SNP [dm6]	C	A	9.296e^-5	0.792	INTRON CG43693	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	19895426	3R_19895426_SNP [dm3] 3R_24069704_SNP [dm6]	C	T	9.351e^-5	0.792	INTRON 4EHP
2L	2853273	2L_2853273_SNP [dm3] 2L_2853273_SNP [dm6]	C	T	9.473e^-5	0.792	UTR_5_PRIME CG3104
2L	10524747	2L_10524747_SNP [dm3] 2L_10524747_SNP [dm6]	C	A	9.498e^-5	0.792	INTERGENIC
3R	24431869	3R_24431869_SNP [dm3] 3R_28606147_SNP [dm6]	C	A	9.561e^-5	0.792	UTR_5_PRIME CG9986 DOWNSTREAM Hrb98DE	TF binding site BDTNP1_TFBS_dl
2R	17409012	2R_17409012_SNP [dm3] 2R_21521507_SNP [dm6]	A	C	9.647e^-5	0.792	UPSTREAM Egfr INTRON CG30289	TF binding site BDTNP1_TFBS_dl
X	20598044	X_20598044_DEL [dm3] X_20727017_DEL [dm6]	AC	T	9.712e^-5	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	4273086	2L_4273086_SNP [dm3] 2L_4273086_SNP [dm6]	T	G	9.866e^-5	0.792	INTERGENIC
3L	5909594	3L_5909594_SNP [dm3] 3L_5916494_SNP [dm6]	C	T	9.883e^-5	0.792	INTRON CG13288
3R	23783132	3R_23783132_SNP [dm3] 3R_27957410_SNP [dm6]	T	G	9.894e^-5	0.792	UTR_3_PRIME CG4884 & 1 other DOWNSTREAM CG5527	TF binding site mE1_TFBS_cad
3R	26786466	3R_26786466_SNP [dm3] 3R_30960744_SNP [dm6]	A	G	9.956e^-5	0.792	NON_SYNONYMOUS_CODING CG15548
X	16922646	X_16922646_SNP [dm3] X_17028613_SNP [dm6]	T	C	9.973e^-5	0.792	INTRON CG45002
3L	14709483	3L_14709483_SNP [dm3] 3L_14716383_SNP [dm6]	G	A	1.004e^-4	0.792	INTRON ome	regulatory region REDfly_CRMs
3R	23167552	3R_23167552_SNP [dm3] 3R_27341830_SNP [dm6]	T	A	1.006e^-4	0.792	INTRON CG42534
3L	5206338	3L_5206338_SNP [dm3] 3L_5213238_SNP [dm6]	A	C	1.012e^-4	0.792	INTRON shep	TF binding site mE1_TFBS_HSA
3R	23189138	3R_23189138_SNP [dm3] 3R_27363416_SNP [dm6]	C	A	1.016e^-4	0.792	NON_SYNONYMOUS_CODING CG42534	TF binding site mE1_TFBS_chinmo
3R	12662148	3R_12662148_SNP [dm3] 3R_16836426_SNP [dm6]	T	G	1.019e^-4	0.792	INTRON iab-8
2L	6058742	2L_6058742_SNP [dm3] 2L_6058742_SNP [dm6]	T	C	1.019e^-4	0.792	INTRON CG13995	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22639898	3R_22639898_SNP [dm3] 3R_26814176_SNP [dm6]	T	A	1.026e^-4	0.792	INTRON Tl
3L	5206295	3L_5206295_SNP [dm3] 3L_5213195_SNP [dm6]	T	C	1.027e^-4	0.792	INTRON shep	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	13736276	3R_13736276_SNP [dm3] 3R_17910554_SNP [dm6]	A	C	1.029e^-4	0.792	UPSTREAM CG43445 INTRON Rim
X	16670721	X_16670721_SNP [dm3] X_16776688_SNP [dm6]	G	A	1.038e^-4	0.792	INTRON if	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	16670724	X_16670724_SNP [dm3] X_16776691_SNP [dm6]	T	C	1.038e^-4	0.792	INTRON if	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	4751652	3L_4751652_SNP [dm3] 3L_4751652_SNP [dm6]	G	A	1.044e^-4	0.792	DOWNSTREAM CG12493 INTRON RhoGEF64C
3L	11532565	3L_11532565_SNP [dm3] 3L_11539465_SNP [dm6]	G	C	1.048e^-4	0.792	INTRON Mob2
2R	18272957	2R_18272957_SNP [dm3] 2R_22385452_SNP [dm6]	T	C	1.051e^-4	0.792	INTRON CG13506
2L	2638381	2L_2638381_SNP [dm3] 2L_2638381_SNP [dm6]	C	T	1.057e^-4	0.792	INTERGENIC
3R	26493611	3R_26493611_SNP [dm3] 3R_30667889_SNP [dm6]	G	T	1.061e^-4	0.792	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	4934355	3R_4934355_SNP [dm3] 3R_9108633_SNP [dm6]	C	T	1.063e^-4	0.792	INTRON pum
2L	5853973	2L_5853973_SNP [dm3] 2L_5853973_SNP [dm6]	A	C	1.066e^-4	0.792	INTRON TrissinR
X	18182569	X_18182569_SNP [dm3] X_18288536_SNP [dm6]	A	C	1.072e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_inv
2R	19072664	2R_19072664_SNP [dm3] 2R_23185141_SNP [dm6]	A	G	1.073e^-4	0.792	SYNONYMOUS_CODING CG13539 INTRON CG34371	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19073300	2R_19073300_SNP [dm3] 2R_23185777_SNP [dm6]	G	C	1.073e^-4	0.792	DOWNSTREAM CG13539 INTRON CG34371	TF binding site mE1_TFBS_sens
X	4730339	X_4730339_SNP [dm3] X_4836306_SNP [dm6]	A	C	1.091e^-4	0.792	INTERGENIC
3L	6055156	3L_6055156_SNP [dm3] 3L_6062056_SNP [dm6]	C	T	1.099e^-4	0.792	DOWNSTREAM CG6592 INTRON CG10472
2R	13081963	2R_13081963_SNP [dm3] 2R_17194458_SNP [dm6]	T	G	1.100e^-4	0.792	UPSTREAM CG10950 INTERGENIC
X	4364456	X_4364456_SNP [dm3] X_4470423_SNP [dm6]	G	C	1.101e^-4	0.792	INTRON bi & 1 other
3R	6033250	3R_6033250_SNP [dm3] 3R_10207528_SNP [dm6]	C	A	1.106e^-4	0.792	INTRON Syn & 1 other
2L	8661035	2L_8661035_SNP [dm3] 2L_8661035_SNP [dm6]	T	C	1.114e^-4	0.792	INTRON Sema-1a
X	9780781	X_9780781_SNP [dm3] X_9886748_SNP [dm6]	A	G	1.130e^-4	0.792	INTERGENIC
3L	18274588	3L_18274588_SNP [dm3] 3L_18281488_SNP [dm6]	G	A	1.133e^-4	0.792	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	13081965	2R_13081965_SNP [dm3] 2R_17194460_SNP [dm6]	T	A	1.136e^-4	0.792	UPSTREAM CG10950 INTERGENIC
2R	12303891	2R_12303891_SNP [dm3] 2R_16416386_SNP [dm6]	G	C	1.143e^-4	0.792	SYNONYMOUS_CODING Menl-2 UTR_3_PRIME Menl-1 INTRON Sema-2b	TF binding site mE1_TFBS_inv
X	572448	X_572448_SNP [dm3] X_678415_SNP [dm6]	A	G	1.144e^-4	0.792	INTERGENIC
2L	8661050	2L_8661050_SNP [dm3] 2L_8661050_SNP [dm6]	C	A	1.145e^-4	0.792	INTRON Sema-1a
3L	10850259	3L_10850259_SNP [dm3] 3L_10857159_SNP [dm6]	T	C	1.152e^-4	0.792	UPSTREAM tna INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	11385759	3L_11385759_SNP [dm3] 3L_11392659_SNP [dm6]	A	G	1.163e^-4	0.792	INTERGENIC
3L	15176750	3L_15176750_SNP [dm3] 3L_15183650_SNP [dm6]	C	T	1.166e^-4	0.792	INTERGENIC
3L	16338587	3L_16338587_SNP [dm3] 3L_16345487_SNP [dm6]	T	A	1.175e^-4	0.792	UPSTREAM CG33257 DOWNSTREAM CG4998 INTERGENIC
3L	4276320	3L_4276320_SNP [dm3] 3L_4276320_SNP [dm6]	A	T	1.177e^-4	0.792	NON_SYNONYMOUS_CODING CG1273	TF binding site mE1_TFBS_sens
X	575950	X_575950_SNP [dm3] X_681917_SNP [dm6]	G	T	1.177e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
X	521808	X_521808_SNP [dm3] X_627775_SNP [dm6]	A	T	1.180e^-4	0.792	UTR_3_PRIME CG17829 DOWNSTREAM RpL36
3L	805781	3L_805781_SNP [dm3] 3L_805781_SNP [dm6]	A	G	1.189e^-4	0.792	INTERGENIC
3L	12385807	3L_12385807_SNP [dm3] 3L_12392707_SNP [dm6]	A	T	1.190e^-4	0.792	INTERGENIC
3L	9995804	3L_9995804_SNP [dm3] 3L_10002704_SNP [dm6]	C	T	1.199e^-4	0.792	INTRON dpr6
2L	11400666	2L_11400666_SNP [dm3] 2L_11400666_SNP [dm6]	G	A	1.205e^-4	0.792	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	19953117	X_19953117_SNP [dm3] X_20059084_SNP [dm6]	A	G	1.205e^-4	0.792	INTRON Dop2R
2L	4834150	2L_4834150_SNP [dm3] 2L_4834150_SNP [dm6]	C	T	1.206e^-4	0.792	SYNONYMOUS_CODING Ir25a
3L	21107610	3L_21107610_SNP [dm3] 3L_21114510_SNP [dm6]	A	T	1.213e^-4	0.792	INTRON ko	regulatory region REDfly_CRMs
3R	14170971	3R_14170971_SNP [dm3] 3R_18345249_SNP [dm6]	A	T	1.214e^-4	0.792	INTRON CG15803
3R	24431865	3R_24431865_SNP [dm3] 3R_28606143_SNP [dm6]	A	T	1.214e^-4	0.792	UTR_5_PRIME CG9986 DOWNSTREAM Hrb98DE	TF binding site BDTNP1_TFBS_dl
X	573282	X_573282_SNP [dm3] X_679249_SNP [dm6]	A	G	1.221e^-4	0.792	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2538094	2L_2538094_SNP [dm3] 2L_2538094_SNP [dm6]	G	A	1.253e^-4	0.792	INTERGENIC
3L	6956287	3L_6956287_SNP [dm3] 3L_6963187_SNP [dm6]	T	C	1.265e^-4	0.792	INTRON sgl	TF binding site BDTNP1_TFBS_dl
3R	25650448	3R_25650448_SNP [dm3] 3R_29824726_SNP [dm6]	C	A	1.285e^-4	0.792	INTRON neo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7629186	2R_7629186_SNP [dm3] 2R_11741681_SNP [dm6]	A	G	1.286e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4213482	3L_4213482_SNP [dm3] 3L_4213482_SNP [dm6]	C	T	1.289e^-4	0.792	UPSTREAM Cpr64Ac INTRON CG43367	TF binding site mE1_TFBS_chinmo
3L	4213481	3L_4213481_SNP [dm3] 3L_4213481_SNP [dm6]	A	C	1.298e^-4	0.792	UPSTREAM Cpr64Ac INTRON CG43367	TF binding site mE1_TFBS_chinmo
3L	13094196	3L_13094196_SNP [dm3] 3L_13101096_SNP [dm6]	T	A	1.313e^-4	0.792	DOWNSTREAM CR44554 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3529181	2R_3529181_SNP [dm3] 2R_7641676_SNP [dm6]	C	A	1.329e^-4	0.792	NON_SYNONYMOUS_CODING CG43340 INTRON CG43340	TF binding site mE1_TFBS_cad
3L	808708	3L_808708_SNP [dm3] 3L_808708_SNP [dm6]	T	A	1.330e^-4	0.792	INTERGENIC
3R	22626097	3R_22626097_SNP [dm3] 3R_26800375_SNP [dm6]	G	T	1.346e^-4	0.792	INTRON Tl
3L	16351264	3L_16351264_SNP [dm3] 3L_16358164_SNP [dm6]	C	T	1.353e^-4	0.792	INTRON CG45057
3L	21118442	3L_21118442_SNP [dm3] 3L_21125342_SNP [dm6]	T	C	1.357e^-4	0.792	DOWNSTREAM CG33284 INTRON ko	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	5145567	2L_5145567_SNP [dm3] 2L_5145567_SNP [dm6]	C	G	1.360e^-4	0.792	UPSTREAM Msp300 INTRON Msp300	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	16927470	2R_16927470_SNP [dm3] 2R_21039965_SNP [dm6]	A	C	1.363e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13312896	2R_13312896_SNP [dm3] 2R_17425391_SNP [dm6]	C	A	1.375e^-4	0.792	SYNONYMOUS_CODING l_2_k01209 DOWNSTREAM CG6550
2L	9117599	2L_9117599_SNP [dm3] 2L_9117599_SNP [dm6]	A	C	1.375e^-4	0.792	INTERGENIC
3L	16315861	3L_16315861_SNP [dm3] 3L_16322761_SNP [dm6]	A	C	1.377e^-4	0.792	UPSTREAM CG13059 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	24435922	3R_24435922_SNP [dm3] 3R_28610200_SNP [dm6]	G	A	1.379e^-4	0.792	INTRON CG10011	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20830619	3R_20830619_SNP [dm3] 3R_25004897_SNP [dm6]	A	G	1.383e^-4	0.792	INTRON tnc
3R	20127472	3R_20127472_SNP [dm3] 3R_24301750_SNP [dm6]	C	T	1.393e^-4	0.792	INTRON crb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	6752599	3L_6752599_SNP [dm3] 3L_6759499_SNP [dm6]	T	C	1.399e^-4	0.792	INTRON CG32392
2L	2804823	2L_2804823_SNP [dm3] 2L_2804823_SNP [dm6]	C	T	1.411e^-4	0.792	UPSTREAM daw INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	4364459	X_4364459_SNP [dm3] X_4470426_SNP [dm6]	T	C	1.424e^-4	0.792	INTRON bi & 1 other
2R	14992533	2R_14992533_SNP [dm3] 2R_19105028_SNP [dm6]	C	G	1.439e^-4	0.792	INTRON 5-HT1A
X	5572071	X_5572071_SNP [dm3] X_5678038_SNP [dm6]	T	A	1.443e^-4	0.792	INTRON Tre1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	4841660	3L_4841660_SNP [dm3] 3L_4841660_SNP [dm6]	A	G	1.443e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	15212362	X_15212362_SNP [dm3] X_15318329_SNP [dm6]	A	G	1.456e^-4	0.792	UTR_3_PRIME gce UPSTREAM CR44961
3R	13736343	3R_13736343_SNP [dm3] 3R_17910621_SNP [dm6]	A	G	1.464e^-4	0.792	UPSTREAM CG43445 INTRON Rim
2L	15013489	2L_15013489_SNP [dm3] 2L_15013489_SNP [dm6]	T	G	1.476e^-4	0.792	UPSTREAM CR43856 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	22443152	3R_22443152_SNP [dm3] 3R_26617430_SNP [dm6]	T	C	1.480e^-4	0.792	INTERGENIC
3R	22443153	3R_22443153_SNP [dm3] 3R_26617431_SNP [dm6]	C	G	1.480e^-4	0.792	INTERGENIC
3L	9347613	3L_9347613_SNP [dm3] 3L_9354513_SNP [dm6]	G	A	1.488e^-4	0.792	NON_SYNONYMOUS_CODING CG32040 INTRON UGP	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9347654	3L_9347654_SNP [dm3] 3L_9354554_SNP [dm6]	C	T	1.488e^-4	0.792	SYNONYMOUS_CODING CG32040 INTRON UGP	TF binding site mE1_TFBS_HSA
X	14364715	X_14364715_SNP [dm3] X_14470682_SNP [dm6]	C	A	1.493e^-4	0.792	INTERGENIC
2R	10675051	2R_10675051_SNP [dm3] 2R_14787546_SNP [dm6]	A	C	1.494e^-4	0.792	INTRON kn
2L	2827498	2L_2827498_SNP [dm3] 2L_2827498_SNP [dm6]	A	T	1.498e^-4	0.792	INTRON Duox
3L	11141715	3L_11141715_SNP [dm3] 3L_11148615_SNP [dm6]	G	T	1.509e^-4	0.792	DOWNSTREAM CG6216 INTRON CG32082
3R	25544719	3R_25544719_SNP [dm3] 3R_29718997_SNP [dm6]	G	T	1.510e^-4	0.792	UTR_5_PRIME CG15506	regulatory region REDfly_CRMs
3R	5324636	3R_5324636_SNP [dm3] 3R_9498914_SNP [dm6]	A	T	1.514e^-4	0.792	UPSTREAM RhoL INTRON RhoL	TF binding site BDTNP1_TFBS_twi
3R	27278824	3R_27278824_SNP [dm3] 3R_31453102_SNP [dm6]	G	C	1.517e^-4	0.792	INTRON Gprk2	TF binding site mE1_TFBS_cad
3R	27278828	3R_27278828_SNP [dm3] 3R_31453106_SNP [dm6]	A	C	1.517e^-4	0.792	INTRON Gprk2	TF binding site mE1_TFBS_cad
3R	27278833	3R_27278833_SNP [dm3] 3R_31453111_SNP [dm6]	A	G	1.517e^-4	0.792	INTRON Gprk2	TF binding site mE1_TFBS_cad
3L	7227533	3L_7227533_SNP [dm3] 3L_7234433_SNP [dm6]	G	A	1.522e^-4	0.792	UPSTREAM CG14826 INTERGENIC
3R	14557691	3R_14557691_SNP [dm3] 3R_18731969_SNP [dm6]	C	A	1.523e^-4	0.792	UTR_3_PRIME Cha UPSTREAM CG14302 DOWNSTREAM Cha
X	569478	X_569478_SNP [dm3] X_675445_SNP [dm6]	G	A	1.523e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	7206186	3L_7206186_SNP [dm3] 3L_7213086_SNP [dm6]	A	G	1.524e^-4	0.792	INTERGENIC
X	574831	X_574831_SNP [dm3] X_680798_SNP [dm6]	A	G	1.530e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17448576	2R_17448576_SNP [dm3] 2R_21561071_SNP [dm6]	G	A	1.533e^-4	0.792	UTR_3_PRIME CG10440	TF binding site mE1_TFBS_chinmo
X	19935253	X_19935253_DEL [dm3] X_20041220_DEL [dm6]	CTCGACTCGCTGGC...	C	1.533e^-4	0.792	INTRON Dop2R
3R	23168134	3R_23168134_SNP [dm3] 3R_27342412_SNP [dm6]	T	C	1.539e^-4	0.792	INTRON CG42534
2L	5840932	2L_5840932_SNP [dm3] 2L_5840932_SNP [dm6]	C	T	1.541e^-4	0.792	INTRON TrissinR
3L	5206333	3L_5206333_MNP [dm3] 3L_5213233_MNP [dm6]	TTG	ACT	1.552e^-4	0.792	INTRON shep	TF binding site mE1_TFBS_HSA
2L	2625695	2L_2625695_SNP [dm3] 2L_2625695_SNP [dm6]	C	A	1.553e^-4	0.792	EXON CR45705
3L	5206361	3L_5206361_SNP [dm3] 3L_5213261_SNP [dm6]	C	T	1.556e^-4	0.792	INTRON shep
2R	1841378	2R_1841378_SNP [dm3] 2R_5953873_SNP [dm6]	T	C	1.562e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9761113	3L_9761113_SNP [dm3] 3L_9768013_SNP [dm6]	C	T	1.569e^-4	0.792	INTRON CG8177
2L	2880060	2L_2880060_SNP [dm3] 2L_2880060_SNP [dm6]	C	T	1.576e^-4	0.792	SYNONYMOUS_CODING betaggt-II DOWNSTREAM NTPase	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	594329	3L_594329_INS [dm3] 3L_594329_INS [dm6]	G	GACTTA	1.580e^-4	0.792	INTRON MED14	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22628350	3R_22628350_SNP [dm3] 3R_26802628_SNP [dm6]	T	C	1.585e^-4	0.792	INTRON Tl	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7905366	3L_7905366_SNP [dm3] 3L_7912266_SNP [dm6]	G	T	1.586e^-4	0.792	UPSTREAM CG8281 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	27111734	3R_27111734_SNP [dm3] 3R_31286012_SNP [dm6]	G	C	1.588e^-4	0.792	INTERGENIC
3L	18274650	3L_18274650_SNP [dm3] 3L_18281550_SNP [dm6]	A	G	1.588e^-4	0.792	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	18274658	3L_18274658_DEL [dm3] 3L_18281558_DEL [dm6]	TT	C	1.588e^-4	0.792	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	4835148	2L_4835148_SNP [dm3] 2L_4835148_SNP [dm6]	A	T	1.596e^-4	0.792	UTR_5_PRIME Ir25a UPSTREAM Ir25a DOWNSTREAM tank INTRON Ir25a
2L	4835158	2L_4835158_SNP [dm3] 2L_4835158_SNP [dm6]	T	C	1.596e^-4	0.792	UTR_5_PRIME Ir25a UPSTREAM Ir25a DOWNSTREAM tank INTRON Ir25a
3L	10319300	3L_10319300_SNP [dm3] 3L_10326200_SNP [dm6]	A	T	1.598e^-4	0.792	UPSTREAM CR45244 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z
3L	4714729	3L_4714729_INS [dm3] 3L_4714729_INS [dm6]	G	GG	1.607e^-4	0.792	INTRON RhoGEF64C
2L	9056548	2L_9056548_INS [dm3] 2L_9056548_INS [dm6]	A	AA	1.609e^-4	0.792	INTRON CG31708
2L	19922809	2L_19922809_SNP [dm3] 2L_19922809_SNP [dm6]	T	C	1.609e^-4	0.792	UPSTREAM CR43827 DOWNSTREAM CR43828 INTRON sick
3R	20830604	3R_20830604_SNP [dm3] 3R_25004882_SNP [dm6]	T	C	1.618e^-4	0.792	INTRON tnc
X	554900	X_554900_SNP [dm3] X_660867_SNP [dm6]	T	A	1.632e^-4	0.792	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13675692	2L_13675692_SNP [dm3] 2L_13675692_SNP [dm6]	T	A	1.633e^-4	0.792	INTERGENIC
2L	13675877	2L_13675877_SNP [dm3] 2L_13675877_SNP [dm6]	C	T	1.633e^-4	0.792	DOWNSTREAM CG31814 INTERGENIC
2L	13679498	2L_13679498_SNP [dm3] 2L_13679498_SNP [dm6]	C	T	1.633e^-4	0.792	INTRON CG31814
2L	13679809	2L_13679809_SNP [dm3] 2L_13679809_SNP [dm6]	G	T	1.633e^-4	0.792	INTRON CG31814	TF binding site BDTNP1_TFBS_twi
2L	13679813	2L_13679813_SNP [dm3] 2L_13679813_SNP [dm6]	T	C	1.633e^-4	0.792	INTRON CG31814	TF binding site BDTNP1_TFBS_twi
2L	13680767	2L_13680767_SNP [dm3] 2L_13680767_SNP [dm6]	T	A	1.633e^-4	0.792	INTRON CG31814	TF binding site BDTNP1_TFBS_twi
2L	9464741	2L_9464741_SNP [dm3] 2L_9464741_SNP [dm6]	T	C	1.634e^-4	0.792	DOWNSTREAM numb INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	2626814	2L_2626814_SNP [dm3] 2L_2626814_SNP [dm6]	T	A	1.636e^-4	0.792	EXON CR45705
3R	15639567	3R_15639567_SNP [dm3] 3R_19813845_SNP [dm6]	C	T	1.638e^-4	0.792	INTRON bnl
3L	12019060	3L_12019060_SNP [dm3] 3L_12025960_SNP [dm6]	C	T	1.644e^-4	0.792	INTRON rols
2L	20952320	2L_20952320_SNP [dm3] 2L_20952320_SNP [dm6]	T	C	1.645e^-4	0.792	INTERGENIC
2R	9269184	2R_9269184_SNP [dm3] 2R_13381679_SNP [dm6]	G	T	1.653e^-4	0.792	INTERGENIC
2R	9269187	2R_9269187_SNP [dm3] 2R_13381682_SNP [dm6]	C	T	1.653e^-4	0.792	INTERGENIC
2R	9269189	2R_9269189_SNP [dm3] 2R_13381684_SNP [dm6]	C	T	1.653e^-4	0.792	INTERGENIC
2R	9269191	2R_9269191_SNP [dm3] 2R_13381686_SNP [dm6]	C	T	1.653e^-4	0.792	INTERGENIC
2R	9269192	2R_9269192_SNP [dm3] 2R_13381687_SNP [dm6]	T	C	1.653e^-4	0.792	INTERGENIC
2L	2806114	2L_2806114_SNP [dm3] 2L_2806114_SNP [dm6]	T	C	1.654e^-4	0.792	INTRON daw	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20880081	2L_20880081_SNP [dm3] 2L_20880081_SNP [dm6]	A	G	1.655e^-4	0.792	INTRON sky & 1 other
X	566522	X_566522_SNP [dm3] X_672489_SNP [dm6]	A	C	1.662e^-4	0.792	INTERGENIC
3R	27132996	3R_27132996_SNP [dm3] 3R_31307274_SNP [dm6]	G	A	1.671e^-4	0.792	INTERGENIC
2L	10746810	2L_10746810_SNP [dm3] 2L_10746810_SNP [dm6]	C	G	1.671e^-4	0.792	INTRON CG17124	TF binding site BDTNP1_TFBS_twi
3L	16891436	3L_16891436_SNP [dm3] 3L_16898336_SNP [dm6]	A	C	1.678e^-4	0.792	INTRON Lmpt
3R	20444024	3R_20444024_SNP [dm3] 3R_24618302_SNP [dm6]	G	A	1.688e^-4	0.792	NON_SYNONYMOUS_CODING mld	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12164049	3L_12164049_SNP [dm3] 3L_12170949_SNP [dm6]	T	C	1.697e^-4	0.792	INTRON Rh7
3R	19895400	3R_19895400_DEL [dm3] 3R_24069678_DEL [dm6]	TTACAGT	T	1.701e^-4	0.792	INTRON 4EHP
2R	19344627	2R_19344627_SNP [dm3] 2R_23457104_SNP [dm6]	A	G	1.703e^-4	0.792	SYNONYMOUS_CODING CG43795 DOWNSTREAM skpF	TF binding site mE1_TFBS_chinmo
3L	10850342	3L_10850342_SNP [dm3] 3L_10857242_SNP [dm6]	T	A	1.707e^-4	0.792	UPSTREAM tna INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	14992536	2R_14992536_SNP [dm3] 2R_19105031_SNP [dm6]	G	A	1.719e^-4	0.792	INTRON 5-HT1A
3R	19895387	3R_19895387_DEL [dm3] 3R_24069665_DEL [dm6]	TT	T	1.719e^-4	0.792	INTRON 4EHP
X	558924	X_558924_INS [dm3] X_664891_INS [dm6]	T	TTT	1.721e^-4	0.792	INTERGENIC
3R	14317757	3R_14317757_INS [dm3] 3R_18492035_INS [dm6]	C	TGTATTG	1.723e^-4	0.792	INTRON fru
3R	27145410	3R_27145410_SNP [dm3] 3R_31319688_SNP [dm6]	T	A	1.733e^-4	0.792	INTRON CG34347
2L	15270528	2L_15270528_SNP [dm3] 2L_15270528_SNP [dm6]	C	T	1.736e^-4	0.792	UPSTREAM Cul3 INTRON Cul3	TF binding site BDTNP1_TFBS_dl
3R	21235065	3R_21235065_SNP [dm3] 3R_25409343_SNP [dm6]	G	A	1.740e^-4	0.792	INTRON Fur1
2R	4860593	2R_4860593_SNP [dm3] 2R_8973088_SNP [dm6]	C	A	1.743e^-4	0.792	NON_SYNONYMOUS_CODING CG8213	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	25506860	3R_25506860_SNP [dm3] 3R_29681138_SNP [dm6]	C	T	1.748e^-4	0.792	SYNONYMOUS_CODING CG7582 UTR_5_PRIME CG7582 DOWNSTREAM Cap-D2
3L	12024918	3L_12024918_SNP [dm3] 3L_12031818_SNP [dm6]	C	T	1.750e^-4	0.792	UPSTREAM CG43993 INTRON rols
2L	9464742	2L_9464742_SNP [dm3] 2L_9464742_SNP [dm6]	T	G	1.751e^-4	0.792	DOWNSTREAM numb INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	20830615	3R_20830615_SNP [dm3] 3R_25004893_SNP [dm6]	C	G	1.755e^-4	0.792	INTRON tnc
2L	12844010	2L_12844010_SNP [dm3] 2L_12844010_SNP [dm6]	T	A	1.785e^-4	0.792	INTERGENIC
2L	12844012	2L_12844012_SNP [dm3] 2L_12844012_SNP [dm6]	T	A	1.785e^-4	0.792	INTERGENIC
2L	12844013	2L_12844013_DEL [dm3] 2L_12844013_DEL [dm6]	TTT	T	1.785e^-4	0.792	INTERGENIC
3L	5515903	3L_5515903_DEL [dm3] 3L_5522803_DEL [dm6]	CGTC	C	1.787e^-4	0.792	INTRON Lkr
X	9282731	X_9282731_INS [dm3] X_9388698_INS [dm6]	G	GAAGTG	1.790e^-4	0.792	INTRON mgl
3L	9170911	3L_9170911_SNP [dm3] 3L_9177811_SNP [dm6]	C	T	1.795e^-4	0.792	UTR_5_PRIME Rdl UPSTREAM Rdl
3R	25486055	3R_25486055_SNP [dm3] 3R_29660333_SNP [dm6]	T	A	1.801e^-4	0.792	UPSTREAM Dop1R2 INTERGENIC
3L	10545750	3L_10545750_SNP [dm3] 3L_10552650_SNP [dm6]	G	A	1.808e^-4	0.792	INTRON A2bp1
X	566523	X_566523_DEL [dm3] X_672490_DEL [dm6]	CGTGAAGGATGAGTT...	C	1.821e^-4	0.792	INTERGENIC
3L	7905275	3L_7905275_SNP [dm3] 3L_7912175_SNP [dm6]	T	A	1.821e^-4	0.792	UPSTREAM CG8281 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	7905329	3L_7905329_SNP [dm3] 3L_7912229_SNP [dm6]	T	C	1.821e^-4	0.792	UPSTREAM CG8281 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	2895467	3R_2895467_SNP [dm3] 3R_7069745_SNP [dm6]	C	A	1.829e^-4	0.792	SYNONYMOUS_CODING CG1965 UTR_3_PRIME CG1965	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	11603492	3L_11603492_SNP [dm3] 3L_11610392_SNP [dm6]	A	T	1.831e^-4	0.792	UPSTREAM CG6091 DOWNSTREAM Muc68Ca & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3L	13092657	3L_13092657_SNP [dm3] 3L_13099557_SNP [dm6]	G	T	1.839e^-4	0.792	INTERGENIC
X	21141923	X_21141923_SNP [dm3] X_21270896_SNP [dm6]	A	T	1.845e^-4	0.792	INTRON CG32521
X	554818	X_554818_INS [dm3] X_660785_INS [dm6]	C	CTAACTATTT	1.865e^-4	0.792	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2207967	2L_2207967_SNP [dm3] 2L_2207967_SNP [dm6]	G	A	1.865e^-4	0.792	SYNONYMOUS_CODING CG33124
3R	8157422	3R_8157422_SNP [dm3] 3R_12331700_SNP [dm6]	A	T	1.873e^-4	0.792	INTERGENIC
X	535852	X_535852_SNP [dm3] X_641819_SNP [dm6]	A	G	1.882e^-4	0.792	NON_SYNONYMOUS_CODING su_s_	TF binding site mE1_TFBS_sens
3L	10029155	3L_10029155_SNP [dm3] 3L_10036055_SNP [dm6]	T	A	1.882e^-4	0.792	INTRON dpr6
2L	2806096	2L_2806096_SNP [dm3] 2L_2806096_SNP [dm6]	G	A	1.898e^-4	0.792	INTRON daw	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15314099	2R_15314099_SNP [dm3] 2R_19426594_SNP [dm6]	G	C	1.900e^-4	0.792	INTRON CalpA
3R	27278827	3R_27278827_SNP [dm3] 3R_31453105_SNP [dm6]	C	A	1.902e^-4	0.792	INTRON Gprk2	TF binding site mE1_TFBS_cad
3L	12768656	3L_12768656_SNP [dm3] 3L_12775556_SNP [dm6]	T	A	1.907e^-4	0.792	INTRON CG32106
3L	20176231	3L_20176231_SNP [dm3] 3L_20183131_SNP [dm6]	T	A	1.916e^-4	0.792	INTRON CG42674	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	20184099	X_20184099_SNP [dm3] X_20313072_SNP [dm6]	T	G	1.920e^-4	0.792	INTRON CG1504	TF binding site mE1_TFBS_chinmo
2L	14977061	2L_14977061_SNP [dm3] 2L_14977061_SNP [dm6]	T	A	1.936e^-4	0.792	SYNONYMOUS_CODING mol
3L	6806286	3L_6806286_SNP [dm3] 3L_6813186_SNP [dm6]	C	T	1.936e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med
3R	8582157	3R_8582157_SNP [dm3] 3R_12756435_SNP [dm6]	T	A	1.938e^-4	0.792	INTRON beat-Vc
3R	26323742	3R_26323742_SNP [dm3] 3R_30498020_SNP [dm6]	G	A	1.942e^-4	0.792	SPLICE_SITE_REGION PH4alphaNE1 SYNONYMOUS_CODING PH4alphaNE1	TF binding site mE1_TFBS_chinmo
2L	833363	2L_833363_SNP [dm3] 2L_833363_SNP [dm6]	C	T	1.955e^-4	0.792	DOWNSTREAM drongo & 1 other INTERGENIC
3L	5206325	3L_5206325_SNP [dm3] 3L_5213225_SNP [dm6]	A	G	1.962e^-4	0.792	INTRON shep	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	13073089	3L_13073089_SNP [dm3] 3L_13079989_SNP [dm6]	C	T	1.967e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
X	4356234	X_4356234_SNP [dm3] X_4462201_SNP [dm6]	C	A	1.977e^-4	0.792	INTRON bi & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16334196	2L_16334196_MNP [dm3] 2L_16334196_MNP [dm6]	CAA	TCC	1.984e^-4	0.792	NON_SYNONYMOUS_CODING CG31817	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18582868	2R_18582868_SNP [dm3] 2R_22695363_SNP [dm6]	A	G	1.986e^-4	0.792	INTRON robo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5387661	3L_5387661_SNP [dm3] 3L_5394561_SNP [dm6]	C	T	1.989e^-4	0.792	INTERGENIC
3R	15311973	3R_15311973_SNP [dm3] 3R_19486251_SNP [dm6]	G	A	1.992e^-4	0.792	UPSTREAM Dys INTRON Dys
2L	7043060	2L_7043060_DEL [dm3] 2L_7043060_DEL [dm6]	TTGT	T	1.995e^-4	0.792	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12843897	2L_12843897_SNP [dm3] 2L_12843897_SNP [dm6]	G	A	1.998e^-4	0.792	INTERGENIC
2L	12843903	2L_12843903_SNP [dm3] 2L_12843903_SNP [dm6]	C	T	1.998e^-4	0.792	INTERGENIC
2L	12843914	2L_12843914_SNP [dm3] 2L_12843914_SNP [dm6]	T	A	1.998e^-4	0.792	INTERGENIC
2L	12843917	2L_12843917_SNP [dm3] 2L_12843917_SNP [dm6]	G	C	1.998e^-4	0.792	INTERGENIC
2L	12843918	2L_12843918_SNP [dm3] 2L_12843918_SNP [dm6]	G	A	1.998e^-4	0.792	INTERGENIC
2L	12843924	2L_12843924_SNP [dm3] 2L_12843924_SNP [dm6]	G	A	1.998e^-4	0.792	INTERGENIC
2L	12843926	2L_12843926_DEL [dm3] 2L_12843926_DEL [dm6]	TACAT	T	1.998e^-4	0.792	INTERGENIC
2L	12843951	2L_12843951_SNP [dm3] 2L_12843951_SNP [dm6]	T	A	1.998e^-4	0.792	INTERGENIC
2L	12843982	2L_12843982_SNP [dm3] 2L_12843982_SNP [dm6]	C	T	1.998e^-4	0.792	INTERGENIC
2L	12843987	2L_12843987_SNP [dm3] 2L_12843987_SNP [dm6]	A	T	1.998e^-4	0.792	INTERGENIC
2L	12843989	2L_12843989_SNP [dm3] 2L_12843989_SNP [dm6]	G	C	1.998e^-4	0.792	INTERGENIC
2L	12844068	2L_12844068_SNP [dm3] 2L_12844068_SNP [dm6]	C	T	1.998e^-4	0.792	INTERGENIC
3R	19895385	3R_19895385_SNP [dm3] 3R_24069663_SNP [dm6]	A	C	2.001e^-4	0.792	INTRON 4EHP
3R	19895391	3R_19895391_SNP [dm3] 3R_24069669_SNP [dm6]	T	A	2.005e^-4	0.792	INTRON 4EHP
3L	5748397	3L_5748397_SNP [dm3] 3L_5755297_SNP [dm6]	A	G	2.007e^-4	0.792	INTRON Ubp64E
2L	2205870	2L_2205870_SNP [dm3] 2L_2205870_SNP [dm6]	A	G	2.010e^-4	0.792	SPLICE_SITE_REGION CG31668 DOWNSTREAM CG33124 INTRON CG31668
3L	12682265	3L_12682265_SNP [dm3] 3L_12689165_SNP [dm6]	G	A	2.013e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	13725819	2L_13725819_SNP [dm3] 2L_13725819_SNP [dm6]	C	T	2.020e^-4	0.792	INTERGENIC
3R	14317865	3R_14317865_SNP [dm3] 3R_18492143_SNP [dm6]	G	A	2.028e^-4	0.792	INTRON fru
3R	13736186	3R_13736186_SNP [dm3] 3R_17910464_SNP [dm6]	A	T	2.042e^-4	0.792	UPSTREAM CG43445 INTRON Rim
2L	21339032	2L_21339032_SNP [dm3] 2L_21339032_SNP [dm6]	A	G	2.045e^-4	0.792	UPSTREAM dimm INTRON dimm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	9196395	3L_9196395_SNP [dm3] 3L_9203295_SNP [dm6]	G	T	2.056e^-4	0.792	UTR_3_PRIME Slc45-1
3L	10001642	3L_10001642_SNP [dm3] 3L_10008542_SNP [dm6]	G	T	2.069e^-4	0.792	INTRON dpr6
3L	19507167	3L_19507167_SNP [dm3] 3L_19514067_SNP [dm6]	T	C	2.071e^-4	0.792	INTERGENIC
3R	5045936	3R_5045936_SNP [dm3] 3R_9220214_SNP [dm6]	A	T	2.075e^-4	0.792	INTRON pum	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	14317817	3R_14317817_INS [dm3] 3R_18492095_INS [dm6]	C	CCTACC	2.076e^-4	0.792	INTRON fru
2L	13675987	2L_13675987_SNP [dm3] 2L_13675987_SNP [dm6]	A	T	2.082e^-4	0.792	DOWNSTREAM CG31814 INTERGENIC
3R	26787161	3R_26787161_SNP [dm3] 3R_30961439_SNP [dm6]	C	A	2.082e^-4	0.792	NON_SYNONYMOUS_CODING CG15548
2L	12844063	2L_12844063_SNP [dm3] 2L_12844063_SNP [dm6]	T	A	2.084e^-4	0.792	INTERGENIC
X	569670	X_569670_SNP [dm3] X_675637_SNP [dm6]	C	T	2.085e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	24438914	3R_24438914_SNP [dm3] 3R_28613192_SNP [dm6]	T	A	2.092e^-4	0.792	SYNONYMOUS_CODING CG10011	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25089868	3R_25089868_SNP [dm3] 3R_29264146_SNP [dm6]	T	A	2.095e^-4	0.792	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25089880	3R_25089880_SNP [dm3] 3R_29264158_SNP [dm6]	T	C	2.095e^-4	0.792	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20457654	3R_20457654_SNP [dm3] 3R_24631932_SNP [dm6]	C	A	2.108e^-4	0.792	SYNONYMOUS_CODING atl
2L	2205811	2L_2205811_SNP [dm3] 2L_2205811_SNP [dm6]	C	T	2.114e^-4	0.792	NON_SYNONYMOUS_CODING CG31668 DOWNSTREAM CG33124
2L	2205906	2L_2205906_SNP [dm3] 2L_2205906_SNP [dm6]	T	A	2.114e^-4	0.792	DOWNSTREAM CG33124 INTRON CG31668
2L	2205907	2L_2205907_SNP [dm3] 2L_2205907_SNP [dm6]	C	T	2.114e^-4	0.792	DOWNSTREAM CG33124 INTRON CG31668
3R	18769738	3R_18769738_SNP [dm3] 3R_22944016_SNP [dm6]	T	A	2.119e^-4	0.792	INTRON klg
3L	22902909	3L_22902909_SNP [dm3] 3L_22909809_SNP [dm6]	G	A	2.123e^-4	0.792	UPSTREAM CG12768 DOWNSTREAM CR45661 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	24439016	3R_24439016_SNP [dm3] 3R_28613294_SNP [dm6]	A	G	2.124e^-4	0.792	SYNONYMOUS_CODING CG10011	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	529528	X_529528_SNP [dm3] X_635495_SNP [dm6]	A	G	2.125e^-4	0.792	UTR_5_PRIME Dredd UPSTREAM su_s_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
X	569657	X_569657_SNP [dm3] X_675624_SNP [dm6]	G	A	2.128e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	602453	3L_602453_SNP [dm3] 3L_602453_SNP [dm6]	T	C	2.131e^-4	0.792	INTRON CG13893
3L	7905301	3L_7905301_SNP [dm3] 3L_7912201_SNP [dm6]	T	C	2.132e^-4	0.792	UPSTREAM CG8281 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	2806735	3L_2806735_SNP [dm3] 3L_2806735_SNP [dm6]	G	A	2.133e^-4	0.792	INTRON CG43444	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	19259943	2R_19259943_SNP [dm3] 2R_23372420_SNP [dm6]	G	A	2.133e^-4	0.792	SYNONYMOUS_CODING Golgin245 DOWNSTREAM Ice1	TF binding site mE1_TFBS_chinmo
3L	18386216	3L_18386216_SNP [dm3] 3L_18393116_SNP [dm6]	G	C	2.135e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	15232951	3R_15232951_SNP [dm3] 3R_19407229_SNP [dm6]	T	A	2.136e^-4	0.792	DOWNSTREAM CG5316 INTERGENIC
3L	10713781	3L_10713781_SNP [dm3] 3L_10720681_SNP [dm6]	C	T	2.136e^-4	0.792	INTERGENIC
2L	11230677	2L_11230677_SNP [dm3] 2L_11230677_SNP [dm6]	G	T	2.137e^-4	0.792	INTRON ab
2R	8365361	2R_8365361_SNP [dm3] 2R_12477856_SNP [dm6]	T	C	2.156e^-4	0.792	INTRON Dh44-R2
2L	2330287	2L_2330287_SNP [dm3] 2L_2330287_SNP [dm6]	T	A	2.157e^-4	0.792	INTRON CG9967 & 1 other
2L	12843902	2L_12843902_SNP [dm3] 2L_12843902_SNP [dm6]	G	A	2.161e^-4	0.792	INTERGENIC
2R	1143251	2R_1143251_SNP [dm3] 2R_5255746_SNP [dm6]	T	A	2.168e^-4	0.792	DOWNSTREAM CR41443 INTERGENIC
3R	23917989	3R_23917989_SNP [dm3] 3R_28092267_SNP [dm6]	C	T	2.169e^-4	0.792	INTERGENIC	TF binding site mE1_TFBS_inv
2L	2443879	2L_2443879_SNP [dm3] 2L_2443879_SNP [dm6]	G	A	2.171e^-4	0.792	INTRON dpp	enhancer FlyBase regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3R	26869373	3R_26869373_SNP [dm3] 3R_31043651_SNP [dm6]	T	A	2.178e^-4	0.792	DOWNSTREAM CG33920 INTRON CanA1
3R	24436355	3R_24436355_SNP [dm3] 3R_28610633_SNP [dm6]	A	G	2.182e^-4	0.792	SYNONYMOUS_CODING CG10011	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1699507	3L_1699507_SNP [dm3] 3L_1699507_SNP [dm6]	C	A	2.186e^-4	0.792	INTRON CG7991	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	2918065	2L_2918065_SNP [dm3] 2L_2918065_SNP [dm6]	G	A	2.193e^-4	0.792	INTRON lilli
X	555570	X_555570_SNP [dm3] X_661537_SNP [dm6]	A	G	2.199e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	555935	X_555935_SNP [dm3] X_661902_SNP [dm6]	A	G	2.204e^-4	0.792	INTERGENIC
3L	9355503	3L_9355503_SNP [dm3] 3L_9362403_SNP [dm6]	G	T	2.208e^-4	0.792	NON_SYNONYMOUS_CODING CG34456 DOWNSTREAM Klp67A & 1 other
2R	9778056	2R_9778056_SNP [dm3] 2R_13890551_SNP [dm6]	G	A	2.210e^-4	0.792	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15172604	2L_15172604_SNP [dm3] 2L_15172604_SNP [dm6]	C	T	2.211e^-4	0.792	INTRON CG4168
3R	26871485	3R_26871485_SNP [dm3] 3R_31045763_SNP [dm6]	T	C	2.218e^-4	0.792	UPSTREAM CG33920 INTRON CanA1	transposable element FlyBase
3R	26871503	3R_26871503_SNP [dm3] 3R_31045781_SNP [dm6]	C	T	2.218e^-4	0.792	UPSTREAM CG33920 INTRON CanA1	transposable element FlyBase
X	4989752	X_4989752_SNP [dm3] X_5095719_SNP [dm6]	C	G	2.238e^-4	0.792	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl
X	4989755	X_4989755_SNP [dm3] X_5095722_SNP [dm6]	A	G	2.238e^-4	0.792	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl
X	4989757	X_4989757_SNP [dm3] X_5095724_SNP [dm6]	G	A	2.238e^-4	0.792	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl
2L	13702977	2L_13702977_SNP [dm3] 2L_13702977_SNP [dm6]	T	C	2.239e^-4	0.792	INTRON CG31814
3L	13094288	3L_13094288_SNP [dm3] 3L_13101188_SNP [dm6]	A	T	2.243e^-4	0.792	DOWNSTREAM CR44554 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17212243	X_17212243_SNP [dm3] X_17318210_SNP [dm6]	A	T	2.244e^-4	0.792	INTRON B-H2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23921104	3R_23921104_SNP [dm3] 3R_28095382_SNP [dm6]	T	C	2.245e^-4	0.792	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8675372	3L_8675372_SNP [dm3] 3L_8682272_SNP [dm6]	G	A	2.248e^-4	0.792	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd
2L	3304147	2L_3304147_SNP [dm3] 2L_3304147_SNP [dm6]	G	C	2.250e^-4	0.792	UTR_5_PRIME CG3277	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6537613	2L_6537613_SNP [dm3] 2L_6537613_SNP [dm6]	G	A	2.256e^-4	0.792	INTRON eya	TF binding site BDTNP1_TFBS_z
3L	16531146	3L_16531146_SNP [dm3] 3L_16538046_SNP [dm6]	G	C	2.268e^-4	0.792	INTRON CG43373
2L	6058773	2L_6058773_SNP [dm3] 2L_6058773_SNP [dm6]	C	T	2.270e^-4	0.792	SYNONYMOUS_CODING CG13995	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12427818	3R_12427818_SNP [dm3] 3R_16602096_SNP [dm6]	C	G	2.271e^-4	0.792	INTRON CG10345
X	20184149	X_20184149_SNP [dm3] X_20313122_SNP [dm6]	C	T	2.282e^-4	0.792	INTRON CG1504	TF binding site mE1_TFBS_chinmo
2R	15314084	2R_15314084_SNP [dm3] 2R_19426579_SNP [dm6]	A	C	2.283e^-4	0.792	INTRON CalpA
3R	7888861	3R_7888861_SNP [dm3] 3R_12063139_SNP [dm6]	T	A	2.295e^-4	0.792	UPSTREAM CG14740 INTERGENIC
3R	20457598	3R_20457598_SNP [dm3] 3R_24631876_SNP [dm6]	A	G	2.303e^-4	0.792	UTR_5_PRIME atl
3R	20457774	3R_20457774_SNP [dm3] 3R_24632052_SNP [dm6]	C	T	2.303e^-4	0.792	SYNONYMOUS_CODING atl	TF binding site mE1_TFBS_chinmo
3R	20458467	3R_20458467_SNP [dm3] 3R_24632745_SNP [dm6]	C	G	2.303e^-4	0.792	NON_SYNONYMOUS_CODING atl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23921142	3R_23921142_SNP [dm3] 3R_28095420_SNP [dm6]	C	A	2.304e^-4	0.792	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	10319138	3L_10319138_SNP [dm3] 3L_10326038_SNP [dm6]	T	C	2.306e^-4	0.792	UPSTREAM CR45244 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
3R	11246774	3R_11246774_SNP [dm3] 3R_15421052_SNP [dm6]	A	G	2.307e^-4	0.792	DOWNSTREAM CG6118 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv
2L	5853967	2L_5853967_SNP [dm3] 2L_5853967_SNP [dm6]	C	A	2.318e^-4	0.792	INTRON TrissinR
3R	14317724	3R_14317724_SNP [dm3] 3R_18492002_SNP [dm6]	C	T	2.322e^-4	0.792	INTRON fru
2L	13694324	2L_13694324_SNP [dm3] 2L_13694324_SNP [dm6]	G	A	2.339e^-4	0.792	INTRON CG31814
2L	5096074	2L_5096074_SNP [dm3] 2L_5096074_SNP [dm6]	G	A	2.342e^-4	0.792	UPSTREAM CG4230 DOWNSTREAM CG5828 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2L	14399957	2L_14399957_SNP [dm3] 2L_14399957_SNP [dm6]	C	G	2.352e^-4	0.792	INTRON elB
3R	26448891	3R_26448891_SNP [dm3] 3R_30623169_SNP [dm6]	A	G	2.361e^-4	0.792	INTERGENIC
2L	3145622	2L_3145622_SNP [dm3] 2L_3145622_SNP [dm6]	G	A	2.362e^-4	0.792	SYNONYMOUS_CODING CG12400 UPSTREAM toc DOWNSTREAM Mad	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	10001643	3L_10001643_SNP [dm3] 3L_10008543_SNP [dm6]	T	G	2.371e^-4	0.792	INTRON dpr6
2L	16910959	2L_16910959_SNP [dm3] 2L_16910959_SNP [dm6]	A	G	2.371e^-4	0.792	SYNONYMOUS_CODING tweek UPSTREAM ApepP	TF binding site mE1_TFBS_cad
3R	27133478	3R_27133478_SNP [dm3] 3R_31307756_SNP [dm6]	C	G	2.383e^-4	0.792	INTERGENIC
2L	13983524	2L_13983524_SNP [dm3] 2L_13983524_SNP [dm6]	A	G	2.383e^-4	0.792	SYNONYMOUS_CODING rk DOWNSTREAM NimC2
3R	14317813	3R_14317813_SNP [dm3] 3R_18492091_SNP [dm6]	A	G	2.384e^-4	0.792	INTRON fru
X	559654	X_559654_SNP [dm3] X_665621_SNP [dm6]	T	A	2.388e^-4	0.792	INTERGENIC	transposable element FlyBase
2L	3663777	2L_3663777_SNP [dm3] 2L_3663777_SNP [dm6]	G	T	2.394e^-4	0.792	INTRON CG34340
2R	17084321	2R_17084321_SNP [dm3] 2R_21196816_SNP [dm6]	C	T	2.398e^-4	0.792	INTRON Lapsyn
2L	10441858	2L_10441858_SNP [dm3] 2L_10441858_SNP [dm6]	C	T	2.411e^-4	0.792	UPSTREAM loh DOWNSTREAM CG13142 EXON CR45375
3R	26493105	3R_26493105_SNP [dm3] 3R_30667383_SNP [dm6]	A	G	2.416e^-4	0.792	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	26061853	3R_26061853_SNP [dm3] 3R_30236131_SNP [dm6]	T	C	2.423e^-4	0.792	DOWNSTREAM CG43448 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	382361	3R_382361_SNP [dm3] 3R_4556639_SNP [dm6]	G	A	2.424e^-4	0.792	INTRON CG34357
2L	10460387	2L_10460387_SNP [dm3] 2L_10460387_SNP [dm6]	T	C	2.427e^-4	0.792	SYNONYMOUS_CODING LM408
3L	13453967	3L_13453967_SNP [dm3] 3L_13460867_SNP [dm6]	C	A	2.432e^-4	0.792	SYNONYMOUS_CODING CG10738	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27112059	3R_27112059_SNP [dm3] 3R_31286337_SNP [dm6]	T	C	2.432e^-4	0.792	INTERGENIC
3R	24438947	3R_24438947_SNP [dm3] 3R_28613225_SNP [dm6]	T	G	2.433e^-4	0.792	SYNONYMOUS_CODING CG10011	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16018328	2L_16018328_SNP [dm3] 2L_16018328_SNP [dm6]	C	T	2.443e^-4	0.792	INTRON beat-Ic
2L	9141002	2L_9141002_SNP [dm3] 2L_9141002_SNP [dm6]	C	T	2.446e^-4	0.792	INTRON CG32982
2L	16032969	2L_16032969_SNP [dm3] 2L_16032969_SNP [dm6]	T	A	2.446e^-4	0.792	INTRON beat-Ic	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	23320228	3R_23320228_INS [dm3] 3R_27494506_INS [dm6]	T	TT	2.454e^-4	0.792	INTERGENIC
3R	23320230	3R_23320230_SNP [dm3] 3R_27494508_SNP [dm6]	G	T	2.454e^-4	0.792	INTERGENIC
2L	14434268	2L_14434268_SNP [dm3] 2L_14434268_SNP [dm6]	A	C	2.461e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	9710283	3L_9710283_SNP [dm3] 3L_9717183_SNP [dm6]	T	A	2.465e^-4	0.792	UTR_3_PRIME vsg DOWNSTREAM CG18178 & 1 other
3R	20830598	3R_20830598_SNP [dm3] 3R_25004876_SNP [dm6]	G	T	2.488e^-4	0.792	INTRON tnc
3R	20457868	3R_20457868_SNP [dm3] 3R_24632146_SNP [dm6]	G	A	2.489e^-4	0.792	INTRON atl	TF binding site mE1_TFBS_chinmo
3R	14510776	3R_14510776_SNP [dm3] 3R_18685054_SNP [dm6]	A	T	2.491e^-4	0.792	UTR_3_PRIME CG7708
3R	14317795	3R_14317795_DEL [dm3] 3R_18492073_DEL [dm6]	CTTTTAAC	C	2.502e^-4	0.792	INTRON fru
3R	14317827	3R_14317827_SNP [dm3] 3R_18492105_SNP [dm6]	T	C	2.502e^-4	0.792	INTRON fru
3R	14317847	3R_14317847_SNP [dm3] 3R_18492125_SNP [dm6]	T	G	2.502e^-4	0.792	INTRON fru
3R	14317849	3R_14317849_DEL [dm3] 3R_18492127_DEL [dm6]	TT	T	2.502e^-4	0.792	INTRON fru
3R	14317861	3R_14317861_INS [dm3] 3R_18492139_INS [dm6]	T	TTGAATCATT	2.502e^-4	0.792	INTRON fru
3L	14404940	3L_14404940_SNP [dm3] 3L_14411840_SNP [dm6]	G	T	2.505e^-4	0.792	DOWNSTREAM bbg INTRON CG3919
2R	17832200	2R_17832200_SNP [dm3] 2R_21944695_SNP [dm6]	G	A	2.519e^-4	0.792	UTR_3_PRIME Fili
2L	16910575	2L_16910575_SNP [dm3] 2L_16910575_SNP [dm6]	A	G	2.519e^-4	0.792	UPSTREAM ApepP INTRON tweek
2L	16910577	2L_16910577_DEL [dm3] 2L_16910577_DEL [dm6]	AA	A	2.519e^-4	0.792	UPSTREAM ApepP INTRON tweek
2L	11230757	2L_11230757_SNP [dm3] 2L_11230757_SNP [dm6]	A	T	2.521e^-4	0.792	INTRON ab
2L	9973435	2L_9973435_MNP [dm3] 2L_9973435_MNP [dm6]	CTT	TAA	2.522e^-4	0.792	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	14555149	3L_14555149_SNP [dm3] 3L_14562049_SNP [dm6]	C	A	2.523e^-4	0.792	SPLICE_SITE_REGION CG34039 INTRON CG34039
X	518884	X_518884_SNP [dm3] X_624851_SNP [dm6]	C	T	2.526e^-4	0.792	UTR_3_PRIME CG13364 UPSTREAM CR45475 & 1 other DOWNSTREAM CG13369	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16910557	2L_16910557_SNP [dm3] 2L_16910557_SNP [dm6]	G	T	2.530e^-4	0.792	UPSTREAM ApepP INTRON tweek
2L	16910561	2L_16910561_DEL [dm3] 2L_16910561_DEL [dm6]	TATAACTCT	T	2.530e^-4	0.792	UPSTREAM ApepP INTRON tweek
3L	804523	3L_804523_SNP [dm3] 3L_804523_SNP [dm6]	T	C	2.531e^-4	0.792	UPSTREAM CG13898 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2649332	2L_2649332_SNP [dm3] 2L_2649332_SNP [dm6]	G	A	2.536e^-4	0.792	NON_SYNONYMOUS_CODING CG33125 UTR_3_PRIME CG33125 DOWNSTREAM CG43851
2L	10147458	2L_10147458_SNP [dm3] 2L_10147458_SNP [dm6]	G	A	2.545e^-4	0.792	INTRON CG44153 & 1 other	TF binding site mE1_TFBS_cad
3R	26763503	3R_26763503_SNP [dm3] 3R_30937781_SNP [dm6]	A	T	2.550e^-4	0.792	UPSTREAM CG15550 INTERGENIC
X	3472041	X_3472041_SNP [dm3] X_3578008_SNP [dm6]	T	G	2.562e^-4	0.792	INTRON AstA-R1
3L	7227562	3L_7227562_SNP [dm3] 3L_7234462_SNP [dm6]	T	C	2.564e^-4	0.792	UPSTREAM CG14826 INTERGENIC
3L	1258974	3L_1258974_SNP [dm3] 3L_1258974_SNP [dm6]	G	A	2.564e^-4	0.792	INTRON CG9134
X	19299343	X_19299343_SNP [dm3] X_19405310_SNP [dm6]	G	A	2.564e^-4	0.792	INTRON kek5
2R	9778344	2R_9778344_SNP [dm3] 2R_13890839_SNP [dm6]	A	G	2.567e^-4	0.792	SYNONYMOUS_CODING shot INTRON shot
3R	23448552	3R_23448552_SNP [dm3] 3R_27622830_SNP [dm6]	A	G	2.568e^-4	0.792	DOWNSTREAM CG5612 INTRON Tusp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10545799	3L_10545799_SNP [dm3] 3L_10552699_SNP [dm6]	C	T	2.592e^-4	0.792	INTRON A2bp1
3R	19534364	3R_19534364_SNP [dm3] 3R_23708642_SNP [dm6]	C	A	2.593e^-4	0.792	DOWNSTREAM CG31414 INTERGENIC
2L	2305518	2L_2305518_SNP [dm3] 2L_2305518_SNP [dm6]	T	A	2.596e^-4	0.792	INTERGENIC
X	19689451	X_19689451_SNP [dm3] X_19795418_SNP [dm6]	A	G	2.604e^-4	0.792	INTERGENIC
X	4945554	X_4945554_SNP [dm3] X_5051521_SNP [dm6]	T	C	2.616e^-4	0.792	INTRON CR44833 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	26871108	3R_26871108_SNP [dm3] 3R_31045386_SNP [dm6]	C	G	2.616e^-4	0.792	UPSTREAM CG33920 INTRON CanA1
2L	10646573	2L_10646573_SNP [dm3] 2L_10646573_SNP [dm6]	A	T	2.623e^-4	0.792	DOWNSTREAM CG18284 INTRON CG17097	TF binding site mE1_TFBS_inv mE1_TFBS_run
3L	9984626	3L_9984626_SNP [dm3] 3L_9991526_SNP [dm6]	C	T	2.625e^-4	0.792	INTRON dpr6
3R	7344293	3R_7344293_SNP [dm3] 3R_11518571_SNP [dm6]	T	G	2.636e^-4	0.792	INTERGENIC
3R	7344229	3R_7344229_SNP [dm3] 3R_11518507_SNP [dm6]	G	A	2.636e^-4	0.792	INTERGENIC
3R	26493712	3R_26493712_SNP [dm3] 3R_30667990_SNP [dm6]	A	G	2.642e^-4	0.792	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	9649700	3L_9649700_INS [dm3] 3L_9656600_INS [dm6]	C	CAACAAAATTC...	2.646e^-4	0.792	INTRON fry & 1 other
3L	10708605	3L_10708605_SNP [dm3] 3L_10715505_SNP [dm6]	A	G	2.647e^-4	0.792	INTERGENIC
3R	23444204	3R_23444204_SNP [dm3] 3R_27618482_SNP [dm6]	C	G	2.648e^-4	0.792	INTRON Tusp
3L	9355434	3L_9355434_SNP [dm3] 3L_9362334_SNP [dm6]	G	C	2.664e^-4	0.792	NON_SYNONYMOUS_CODING CG34456 DOWNSTREAM Klp67A & 1 other
3R	19601425	3R_19601425_SNP [dm3] 3R_23775703_SNP [dm6]	C	A	2.666e^-4	0.792	NON_SYNONYMOUS_CODING Nup98-96	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1006671	2L_1006671_SNP [dm3] 2L_1006671_SNP [dm6]	C	T	2.674e^-4	0.792	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2L	1006758	2L_1006758_SNP [dm3] 2L_1006758_SNP [dm6]	A	C	2.674e^-4	0.792	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3R	667649	3R_667649_SNP [dm3] 3R_4841927_SNP [dm6]	C	T	2.681e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3L	9984701	3L_9984701_SNP [dm3] 3L_9991601_SNP [dm6]	T	C	2.699e^-4	0.792	INTRON dpr6
3R	9311357	3R_9311357_SNP [dm3] 3R_13485635_SNP [dm6]	G	A	2.701e^-4	0.792	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	10850343	3L_10850343_SNP [dm3] 3L_10857243_SNP [dm6]	C	T	2.702e^-4	0.792	UPSTREAM tna INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	13224076	2L_13224076_SNP [dm3] 2L_13224076_SNP [dm6]	G	A	2.709e^-4	0.792	SYNONYMOUS_CODING CG16812 DOWNSTREAM CG15480	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	7278689	2R_7278689_SNP [dm3] 2R_11391184_SNP [dm6]	G	A	2.714e^-4	0.792	SPLICE_SITE_REGION sprt INTRON sprt
2R	16199541	2R_16199541_SNP [dm3] 2R_20312036_SNP [dm6]	C	T	2.715e^-4	0.792	INTRON CG13868	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13736226	3R_13736226_SNP [dm3] 3R_17910504_SNP [dm6]	T	G	2.719e^-4	0.792	UPSTREAM CG43445 INTRON Rim
3L	2862370	3L_2862370_SNP [dm3] 3L_2862370_SNP [dm6]	G	T	2.730e^-4	0.792	INTRON CG43444
3R	8157424	3R_8157424_SNP [dm3] 3R_12331702_SNP [dm6]	T	G	2.738e^-4	0.792	INTERGENIC
3R	26532067	3R_26532067_SNP [dm3] 3R_30706345_SNP [dm6]	G	A	2.741e^-4	0.792	UPSTREAM CG31010 INTERGENIC	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA
3R	21413514	3R_21413514_SNP [dm3] 3R_25587792_SNP [dm6]	T	A	2.762e^-4	0.792	INTRON msi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2891075	3L_2891075_SNP [dm3] 3L_2891075_SNP [dm6]	A	G	2.766e^-4	0.792	INTRON spz5
2R	9269130	2R_9269130_SNP [dm3] 2R_13381625_SNP [dm6]	T	G	2.766e^-4	0.792	INTERGENIC
3R	16698450	3R_16698450_SNP [dm3] 3R_20872728_SNP [dm6]	G	T	2.768e^-4	0.792	UPSTREAM TotC INTERGENIC
3R	25405762	3R_25405762_SNP [dm3] 3R_29580040_SNP [dm6]	C	T	2.770e^-4	0.792	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	17212170	X_17212170_SNP [dm3] X_17318137_SNP [dm6]	A	G	2.782e^-4	0.792	INTRON B-H2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	528657	X_528657_SNP [dm3] X_634624_SNP [dm6]	C	T	2.784e^-4	0.792	SYNONYMOUS_CODING Dredd DOWNSTREAM l_1_1Bi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
2L	4827156	2L_4827156_SNP [dm3] 2L_4827156_SNP [dm6]	C	T	2.785e^-4	0.792	INTRON CG15628	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	19096857	X_19096857_SNP [dm3] X_19202824_SNP [dm6]	A	T	2.802e^-4	0.792	UTR_3_PRIME Ulp1 UPSTREAM CG7990
3R	26407415	3R_26407415_SNP [dm3] 3R_30581693_SNP [dm6]	G	A	2.802e^-4	0.792	SYNONYMOUS_CODING CG9702 DOWNSTREAM Rpt6R
3L	811294	3L_811294_SNP [dm3] 3L_811294_SNP [dm6]	C	T	2.812e^-4	0.792	INTERGENIC
2R	2920279	2R_2920279_SNP [dm3] 2R_7032774_SNP [dm6]	G	A	2.813e^-4	0.792	UPSTREAM Tsp42Eh INTRON Tsp42Eg
3L	13094269	3L_13094269_SNP [dm3] 3L_13101169_SNP [dm6]	G	A	2.817e^-4	0.792	DOWNSTREAM CR44554 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15469193	2L_15469193_SNP [dm3] 2L_15469193_SNP [dm6]	T	C	2.828e^-4	0.792	EXON CR45353
X	8094060	X_8094060_SNP [dm3] X_8200027_SNP [dm6]	C	A	2.830e^-4	0.792	INTRON sdt
X	17663563	X_17663563_SNP [dm3] X_17769530_SNP [dm6]	C	T	2.839e^-4	0.792	SYNONYMOUS_CODING unc-4	TF binding site BDTNP1_TFBS_dl
2L	937777	2L_937777_SNP [dm3] 2L_937777_SNP [dm6]	T	C	2.840e^-4	0.792	INTRON CG4341
2L	976624	2L_976624_SNP [dm3] 2L_976624_SNP [dm6]	G	T	2.843e^-4	0.792	INTERGENIC
3R	27132945	3R_27132945_SNP [dm3] 3R_31307223_SNP [dm6]	T	C	2.844e^-4	0.792	INTERGENIC
2R	13310515	2R_13310515_DEL [dm3] 2R_17423010_DEL [dm6]	ATATTACTTACT...	A	2.850e^-4	0.792	INTRON l_2_k01209	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10169748	2L_10169748_INS [dm3] 2L_10169748_INS [dm6]	A	ATA	2.854e^-4	0.792	INTRON CG44153
3R	5082803	3R_5082803_SNP [dm3] 3R_9257081_SNP [dm6]	T	C	2.856e^-4	0.792	NON_SYNONYMOUS_CODING CG16736 DOWNSTREAM CG9740 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3R	9280981	3R_9280981_SNP [dm3] 3R_13455259_SNP [dm6]	G	A	2.856e^-4	0.792	DOWNSTREAM CR17025 INTRON CG14372
2R	13309919	2R_13309919_SNP [dm3] 2R_17422414_SNP [dm6]	C	A	2.860e^-4	0.792	INTRON l_2_k01209	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	2615357	X_2615357_SNP [dm3] X_2721324_SNP [dm6]	T	A	2.864e^-4	0.792	NON_SYNONYMOUS_CODING fs_1_Yb UPSTREAM CG2701	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	8381938	3L_8381938_SNP [dm3] 3L_8388838_SNP [dm6]	C	T	2.869e^-4	0.792	SYNONYMOUS_CODING ImpE1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	9997611	2L_9997611_SNP [dm3] 2L_9997611_SNP [dm6]	T	G	2.869e^-4	0.792	NON_SYNONYMOUS_CODING SoYb INTRON CG31875	TF binding site mE1_TFBS_sens
3R	13736153	3R_13736153_SNP [dm3] 3R_17910431_SNP [dm6]	T	A	2.876e^-4	0.792	UPSTREAM CG43445 INTRON Rim
3R	13736159	3R_13736159_SNP [dm3] 3R_17910437_SNP [dm6]	G	A	2.876e^-4	0.792	UPSTREAM CG43445 INTRON Rim
2L	8795142	2L_8795142_SNP [dm3] 2L_8795142_SNP [dm6]	T	C	2.877e^-4	0.792	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
X	18254260	X_18254260_SNP [dm3] X_18360227_SNP [dm6]	C	T	2.879e^-4	0.792	SYNONYMOUS_CODING CG6106	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17083552	2R_17083552_DEL [dm3] 2R_21196047_DEL [dm6]	AA	A	2.879e^-4	0.792	INTRON Lapsyn
3L	10545805	3L_10545805_SNP [dm3] 3L_10552705_SNP [dm6]	T	A	2.893e^-4	0.792	INTRON A2bp1
3L	7226548	3L_7226548_SNP [dm3] 3L_7233448_SNP [dm6]	T	G	2.893e^-4	0.792	INTERGENIC
3R	9552684	3R_9552684_SNP [dm3] 3R_13726962_SNP [dm6]	G	A	2.899e^-4	0.792	INTRON CG34383
3R	15980246	3R_15980246_SNP [dm3] 3R_20154524_SNP [dm6]	A	C	2.905e^-4	0.792	INTERGENIC	TF binding site mE1_TFBS_bab1
X	7213169	X_7213169_SNP [dm3] X_7319136_SNP [dm6]	A	G	2.914e^-4	0.792	INTRON CR44357 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Stat92E
3L	6924531	3L_6924531_SNP [dm3] 3L_6931431_SNP [dm6]	T	A	2.923e^-4	0.792	UTR_3_PRIME CG45413
3R	13736324	3R_13736324_SNP [dm3] 3R_17910602_SNP [dm6]	G	A	2.928e^-4	0.792	UPSTREAM CG43445 INTRON Rim
3R	25486109	3R_25486109_SNP [dm3] 3R_29660387_SNP [dm6]	T	G	2.938e^-4	0.792	UPSTREAM Dop1R2 INTERGENIC
X	3383146	X_3383146_SNP [dm3] X_3489113_SNP [dm6]	C	T	2.941e^-4	0.792	UTR_3_PRIME CG10803 DOWNSTREAM CG10803 INTRON CR44999	TF binding site mE1_TFBS_HSA
2L	4717425	2L_4717425_SNP [dm3] 2L_4717425_SNP [dm6]	G	C	2.946e^-4	0.792	INTRON CG34351	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	15907659	2L_15907659_SNP [dm3] 2L_15907659_SNP [dm6]	G	A	2.950e^-4	0.792	INTRON beat-Ib
3L	9553436	3L_9553436_SNP [dm3] 3L_9560336_SNP [dm6]	A	T	2.952e^-4	0.792	INTRON CG42673	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	809189	3L_809189_SNP [dm3] 3L_809189_SNP [dm6]	G	A	2.959e^-4	0.792	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3R	27111740	3R_27111740_SNP [dm3] 3R_31286018_SNP [dm6]	C	T	2.959e^-4	0.792	INTERGENIC
2L	2205704	2L_2205704_SNP [dm3] 2L_2205704_SNP [dm6]	G	A	2.966e^-4	0.792	DOWNSTREAM CG33124 INTRON CG31668
2L	8329812	2L_8329812_SNP [dm3] 2L_8329812_SNP [dm6]	A	G	2.966e^-4	0.792	INTRON CG14275
3R	27111680	3R_27111680_SNP [dm3] 3R_31285958_SNP [dm6]	A	C	2.971e^-4	0.792	INTERGENIC
2L	14971220	2L_14971220_DEL [dm3] 2L_14971220_DEL [dm6]	AA	A	2.977e^-4	0.792	INTRON CG42313
2L	5705415	2L_5705415_SNP [dm3] 2L_5705415_SNP [dm6]	A	T	2.978e^-4	0.792	UPSTREAM CG7236 INTERGENIC
3L	6065530	3L_6065530_SNP [dm3] 3L_6072430_SNP [dm6]	T	G	2.980e^-4	0.792	NON_SYNONYMOUS_CODING CG6602 DOWNSTREAM CG42269	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5878581	3L_5878581_SNP [dm3] 3L_5885481_SNP [dm6]	G	A	2.980e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	9351627	3L_9351627_SNP [dm3] 3L_9358527_SNP [dm6]	C	T	2.986e^-4	0.792	UPSTREAM UGP & 1 other INTRON UGP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	23905651	3R_23905651_SNP [dm3] 3R_28079929_SNP [dm6]	C	A	2.987e^-4	0.792	INTRON CG34362
2L	13694482	2L_13694482_SNP [dm3] 2L_13694482_SNP [dm6]	G	C	2.996e^-4	0.792	INTRON CG31814
2R	18508778	2R_18508778_SNP [dm3] 2R_22621273_SNP [dm6]	C	T	3.001e^-4	0.792	INTRON CG33143	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	6033263	3R_6033263_SNP [dm3] 3R_10207541_SNP [dm6]	T	G	3.012e^-4	0.792	INTRON Syn & 1 other
3R	16889793	3R_16889793_SNP [dm3] 3R_21064071_SNP [dm6]	T	G	3.014e^-4	0.792	UTR_5_PRIME Cortactin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	5904102	3L_5904102_SNP [dm3] 3L_5911002_SNP [dm6]	C	T	3.026e^-4	0.792	INTRON CG13288
2L	11652317	2L_11652317_DEL [dm3] 2L_11652317_DEL [dm6]	AAAATAAC	A	3.027e^-4	0.792	UPSTREAM CG4983 & 1 other INTERGENIC
2L	22140497	2L_22140497_SNP [dm3] 2L_22140497_SNP [dm6]	A	C	3.031e^-4	0.792	INTRON CG42748	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	9347684	3L_9347684_SNP [dm3] 3L_9354584_SNP [dm6]	T	G	3.045e^-4	0.792	NON_SYNONYMOUS_CODING CG32040 INTRON UGP	TF binding site mE1_TFBS_HSA
3L	6952913	3L_6952913_SNP [dm3] 3L_6959813_SNP [dm6]	T	G	3.054e^-4	0.792	UTR_3_PRIME sgl DOWNSTREAM Surf1
2R	17409007	2R_17409007_SNP [dm3] 2R_21521502_SNP [dm6]	A	T	3.056e^-4	0.792	UPSTREAM Egfr INTRON CG30289	TF binding site BDTNP1_TFBS_dl
3L	12022694	3L_12022694_SNP [dm3] 3L_12029594_SNP [dm6]	G	T	3.068e^-4	0.792	INTRON rols
3R	18285394	3R_18285394_SNP [dm3] 3R_22459672_SNP [dm6]	A	C	3.071e^-4	0.792	DOWNSTREAM CG34376 & 1 other INTRON CG34376
X	21137435	X_21137435_SNP [dm3] X_21266408_SNP [dm6]	A	C	3.077e^-4	0.792	INTRON CG32521	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21137436	X_21137436_SNP [dm3] X_21266409_SNP [dm6]	C	T	3.077e^-4	0.792	INTRON CG32521	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8856769	2L_8856769_SNP [dm3] 2L_8856769_SNP [dm6]	C	A	3.080e^-4	0.792	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	1330649	2L_1330649_SNP [dm3] 2L_1330649_SNP [dm6]	C	A	3.082e^-4	0.792	DOWNSTREAM a5 INTERGENIC
3R	13736325	3R_13736325_SNP [dm3] 3R_17910603_SNP [dm6]	G	T	3.096e^-4	0.792	UPSTREAM CG43445 INTRON Rim
3L	844869	3L_844869_SNP [dm3] 3L_844869_SNP [dm6]	C	T	3.096e^-4	0.792	SYNONYMOUS_CODING CG13889	TF binding site mE1_TFBS_chinmo
3R	23920900	3R_23920900_SNP [dm3] 3R_28095178_SNP [dm6]	C	T	3.096e^-4	0.792	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21882084	3R_21882084_SNP [dm3] 3R_26056362_SNP [dm6]	G	C	3.097e^-4	0.792	UPSTREAM Dak1 & 1 other DOWNSTREAM CG14550 & 1 other INTRON Sld5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3R	25089871	3R_25089871_SNP [dm3] 3R_29264149_SNP [dm6]	A	T	3.121e^-4	0.792	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21141919	X_21141919_SNP [dm3] X_21270892_SNP [dm6]	C	T	3.137e^-4	0.792	INTRON CG32521
2R	13252878	2R_13252878_SNP [dm3] 2R_17365373_SNP [dm6]	G	T	3.137e^-4	0.792	UTR_3_PRIME mbl INTRON mbl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11123709	3R_11123709_SNP [dm3] 3R_15297987_SNP [dm6]	C	T	3.138e^-4	0.792	DOWNSTREAM Tm1 INTRON Tm1
3L	13222563	3L_13222563_SNP [dm3] 3L_13229463_SNP [dm6]	A	T	3.139e^-4	0.792	INTRON caps	TF binding site BDTNP1_TFBS_dl
3L	3752117	3L_3752117_SNP [dm3] 3L_3752117_SNP [dm6]	A	G	3.140e^-4	0.792	INTRON CG32264
3R	27113449	3R_27113449_DEL [dm3] 3R_31287727_DEL [dm6]	AGAAAA	A	3.152e^-4	0.792	INTERGENIC
2R	19075224	2R_19075224_SNP [dm3] 2R_23187701_SNP [dm6]	C	G	3.157e^-4	0.792	INTRON CG34371	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	24438656	3R_24438656_SNP [dm3] 3R_28612934_SNP [dm6]	G	T	3.160e^-4	0.792	SYNONYMOUS_CODING CG10011	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	16300875	X_16300875_SNP [dm3] X_16406842_SNP [dm6]	G	A	3.164e^-4	0.792	UTR_5_PRIME CG4301 INTRON CG4301
3L	12710734	3L_12710734_SNP [dm3] 3L_12717634_SNP [dm6]	G	A	3.171e^-4	0.792	INTERGENIC
2L	9076871	2L_9076871_SNP [dm3] 2L_9076871_SNP [dm6]	C	G	3.172e^-4	0.792	UPSTREAM CG12439 INTERGENIC
3R	26439442	3R_26439442_SNP [dm3] 3R_30613720_SNP [dm6]	A	C	3.174e^-4	0.792	DOWNSTREAM CR45571 EXON CR45571
2L	2617002	2L_2617002_SNP [dm3] 2L_2617002_SNP [dm6]	C	T	3.176e^-4	0.792	INTERGENIC
2L	2617102	2L_2617102_SNP [dm3] 2L_2617102_SNP [dm6]	G	T	3.176e^-4	0.792	INTERGENIC
2R	2699756	2R_2699756_SNP [dm3] 2R_6812251_SNP [dm6]	T	A	3.184e^-4	0.792	UPSTREAM koi INTRON koi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	9544852	3L_9544852_SNP [dm3] 3L_9551752_SNP [dm6]	C	A	3.184e^-4	0.792	INTRON CG42673
3L	16338552	3L_16338552_SNP [dm3] 3L_16345452_SNP [dm6]	C	T	3.188e^-4	0.792	UPSTREAM CG33257 DOWNSTREAM CG4998 INTERGENIC
3L	16338562	3L_16338562_SNP [dm3] 3L_16345462_SNP [dm6]	A	G	3.188e^-4	0.792	UPSTREAM CG33257 DOWNSTREAM CG4998 INTERGENIC
2L	8329826	2L_8329826_SNP [dm3] 2L_8329826_SNP [dm6]	G	T	3.195e^-4	0.792	INTRON CG14275
3R	27111658	3R_27111658_SNP [dm3] 3R_31285936_SNP [dm6]	A	G	3.199e^-4	0.792	INTERGENIC
3R	5059772	3R_5059772_SNP [dm3] 3R_9234050_SNP [dm6]	C	G	3.200e^-4	0.792	UTR_5_PRIME pum	TF binding site BDTNP1_TFBS_dl
3R	21032363	3R_21032363_SNP [dm3] 3R_25206641_SNP [dm6]	T	C	3.203e^-4	0.792	INTRON CG13654 & 1 other
X	602341	X_602341_SNP [dm3] X_708308_SNP [dm6]	C	T	3.208e^-4	0.792	INTRON sdk
3L	826345	3L_826345_SNP [dm3] 3L_826345_SNP [dm6]	T	G	3.211e^-4	0.792	DOWNSTREAM CG13900 & 3 others INTERGENIC
3L	811463	3L_811463_SNP [dm3] 3L_811463_SNP [dm6]	G	T	3.228e^-4	0.792	INTERGENIC
2L	14590720	2L_14590720_DEL [dm3] 2L_14590720_DEL [dm6]	AA	A	3.237e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14773883	3R_14773883_SNP [dm3] 3R_18948161_SNP [dm6]	A	T	3.246e^-4	0.792	INTRON CG42613
2R	19230926	2R_19230926_DEL [dm3] 2R_23343403_DEL [dm6]	TT	T	3.247e^-4	0.792	DOWNSTREAM CG3502 INTERGENIC
3L	1090689	3L_1090689_SNP [dm3] 3L_1090689_SNP [dm6]	C	A	3.250e^-4	0.792	INTRON bab1	regulatory region REDfly_CRMs
X	17918153	X_17918153_INS [dm3] X_18024120_INS [dm6]	A	AACA	3.253e^-4	0.792	INTRON Sh & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	25654316	3R_25654316_SNP [dm3] 3R_29828594_SNP [dm6]	C	G	3.254e^-4	0.792	INTRON Atg16
X	553004	X_553004_SNP [dm3] X_658971_SNP [dm6]	G	T	3.259e^-4	0.792	INTERGENIC
2L	4812559	2L_4812559_MNP [dm3] 2L_4812559_MNP [dm6]	CAA	TTT	3.259e^-4	0.792	UPSTREAM CR45297 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
2L	4812562	2L_4812562_DEL [dm3] 2L_4812562_DEL [dm6]	ATTGCGC	A	3.259e^-4	0.792	UPSTREAM CR45297 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
3R	12042922	3R_12042922_SNP [dm3] 3R_16217200_SNP [dm6]	T	A	3.269e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12810754	2L_12810754_SNP [dm3] 2L_12810754_SNP [dm6]	A	G	3.276e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26406664	3R_26406664_SNP [dm3] 3R_30580942_SNP [dm6]	C	T	3.280e^-4	0.792	SYNONYMOUS_CODING CG9702	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1125632	2L_1125632_SNP [dm3] 2L_1125632_SNP [dm6]	A	T	3.282e^-4	0.792	INTRON Pino
3L	10330853	3L_10330853_SNP [dm3] 3L_10337753_SNP [dm6]	A	G	3.282e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16338379	3L_16338379_SNP [dm3] 3L_16345279_SNP [dm6]	A	T	3.295e^-4	0.792	DOWNSTREAM CG4998 INTERGENIC
3L	2862452	3L_2862452_SNP [dm3] 3L_2862452_SNP [dm6]	T	C	3.298e^-4	0.792	INTRON CG43444
2L	3880416	2L_3880416_SNP [dm3] 2L_3880416_SNP [dm6]	A	G	3.307e^-4	0.792	UPSTREAM capu INTRON capu
3R	24439901	3R_24439901_SNP [dm3] 3R_28614179_SNP [dm6]	G	A	3.309e^-4	0.792	SYNONYMOUS_CODING CG10011	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2269763	3L_2269763_SNP [dm3] 3L_2269763_SNP [dm6]	C	T	3.317e^-4	0.792	SYNONYMOUS_CODING CG32302 DOWNSTREAM yellow-g	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9274518	3L_9274518_SNP [dm3] 3L_9281418_SNP [dm6]	G	T	3.328e^-4	0.792	INTRON GluRIB
3R	25325930	3R_25325930_SNP [dm3] 3R_29500208_SNP [dm6]	A	G	3.331e^-4	0.792	SYNONYMOUS_CODING Trc8	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	1008597	2L_1008597_SNP [dm3] 2L_1008597_SNP [dm6]	C	G	3.331e^-4	0.792	UTR_3_PRIME IA-2	TF binding site BDTNP1_TFBS_dl
3R	18295966	3R_18295966_SNP [dm3] 3R_22470244_SNP [dm6]	G	A	3.338e^-4	0.792	UTR_5_PRIME Nrx-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_Trl
3R	24435385	3R_24435385_SNP [dm3] 3R_28609663_SNP [dm6]	G	A	3.344e^-4	0.792	SYNONYMOUS_CODING CG10011	TF binding site mE1_TFBS_cad
3R	23417197	3R_23417197_SNP [dm3] 3R_27591475_SNP [dm6]	T	C	3.347e^-4	0.792	INTRON CG5639
3L	10541864	3L_10541864_SNP [dm3] 3L_10548764_SNP [dm6]	A	C	3.348e^-4	0.792	INTRON A2bp1
2L	3427559	2L_3427559_DEL [dm3] 2L_3427559_DEL [dm6]	ACCGATGCGAT...	A	3.355e^-4	0.792	UPSTREAM pgant2 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	26493393	3R_26493393_SNP [dm3] 3R_30667671_SNP [dm6]	G	A	3.368e^-4	0.792	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	4276327	3L_4276327_SNP [dm3] 3L_4276327_SNP [dm6]	T	A	3.370e^-4	0.792	NON_SYNONYMOUS_CODING CG1273	TF binding site mE1_TFBS_sens
3L	17194127	3L_17194127_SNP [dm3] 3L_17201027_SNP [dm6]	T	G	3.384e^-4	0.792	INTRON Rbp6
2L	1021309	2L_1021309_SNP [dm3] 2L_1021309_SNP [dm6]	C	G	3.385e^-4	0.792	INTRON IA-2
2L	955148	2L_955148_SNP [dm3] 2L_955148_SNP [dm6]	C	G	3.385e^-4	0.792	INTRON CG4341
3R	13074381	3R_13074381_INS [dm3] 3R_17248659_INS [dm6]	C	CTATGC	3.389e^-4	0.792	UPSTREAM beat-IIb INTRON beat-IIb
2R	13245690	2R_13245690_SNP [dm3] 2R_17358185_SNP [dm6]	G	A	3.389e^-4	0.792	INTRON mbl
3R	26407463	3R_26407463_SNP [dm3] 3R_30581741_SNP [dm6]	A	T	3.390e^-4	0.792	SYNONYMOUS_CODING CG9702 DOWNSTREAM Rpt6R
3R	23941134	3R_23941134_SNP [dm3] 3R_28115412_SNP [dm6]	C	T	3.398e^-4	0.792	INTERGENIC
2R	19054627	2R_19054627_SNP [dm3] 2R_23167104_SNP [dm6]	G	T	3.400e^-4	0.792	INTRON CG34371	TF binding site mE1_TFBS_HSA
3L	5206375	3L_5206375_SNP [dm3] 3L_5213275_SNP [dm6]	C	T	3.400e^-4	0.792	INTRON shep
X	16108503	X_16108503_SNP [dm3] X_16214470_SNP [dm6]	G	T	3.408e^-4	0.792	INTRON disco	TF binding site mE1_TFBS_HSA
X	10088575	X_10088575_SNP [dm3] X_10194542_SNP [dm6]	C	G	3.410e^-4	0.792	UTR_3_PRIME CG43902 INTRON CR44894
2R	10026513	2R_10026513_SNP [dm3] 2R_14139008_SNP [dm6]	C	T	3.415e^-4	0.792	INTRON Prosap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	22125053	2L_22125053_SNP [dm3] 2L_22125053_SNP [dm6]	A	G	3.421e^-4	0.792	UTR_3_PRIME CycK & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10001232	3L_10001232_SNP [dm3] 3L_10008132_SNP [dm6]	A	C	3.422e^-4	0.792	INTRON dpr6
2L	5812174	2L_5812174_DEL [dm3] 2L_5812174_DEL [dm6]	TCATTTTTACGGACATT...	T	3.422e^-4	0.792	DOWNSTREAM CG43307 INTERGENIC
2L	8099362	2L_8099362_SNP [dm3] 2L_8099362_SNP [dm6]	T	C	3.444e^-4	0.792	INTRON Bsg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	3279095	2L_3279095_SNP [dm3] 2L_3279095_SNP [dm6]	C	T	3.448e^-4	0.792	INTRON CG3332
X	572236	X_572236_INS [dm3] X_678203_INS [dm6]	G	GTGG	3.453e^-4	0.792	INTERGENIC
2L	16906556	2L_16906556_SNP [dm3] 2L_16906556_SNP [dm6]	A	G	3.454e^-4	0.792	INTRON tweek	TF binding site mE1_TFBS_sens
3R	13980338	3R_13980338_SNP [dm3] 3R_18154616_SNP [dm6]	T	C	3.458e^-4	0.792	DOWNSTREAM CG14316 INTERGENIC
2L	14715885	2L_14715885_SNP [dm3] 2L_14715885_SNP [dm6]	G	A	3.467e^-4	0.792	INTERGENIC
2L	2205693	2L_2205693_SNP [dm3] 2L_2205693_SNP [dm6]	A	T	3.468e^-4	0.792	DOWNSTREAM CG33124 INTRON CG31668
3L	16531147	3L_16531147_SNP [dm3] 3L_16538047_SNP [dm6]	G	T	3.471e^-4	0.792	INTRON CG43373
3L	15136493	3L_15136493_SNP [dm3] 3L_15143393_SNP [dm6]	C	T	3.474e^-4	0.792	SYNONYMOUS_CODING CG32147 UPSTREAM Pdi & 2 others DOWNSTREAM CR45396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	4816583	2L_4816583_SNP [dm3] 2L_4816583_SNP [dm6]	A	G	3.475e^-4	0.792	SYNONYMOUS_CODING CG3225 DOWNSTREAM CG15629	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	9548853	3L_9548853_SNP [dm3] 3L_9555753_SNP [dm6]	G	A	3.482e^-4	0.792	INTRON CG42673
3L	4840509	3L_4840509_SNP [dm3] 3L_4840509_SNP [dm6]	C	A	3.492e^-4	0.792	UPSTREAM CG13707 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	6558710	3L_6558710_SNP [dm3] 3L_6565610_SNP [dm6]	G	A	3.496e^-4	0.792	SYNONYMOUS_CODING jv INTRON CG18769	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14621221	3R_14621221_SNP [dm3] 3R_18795499_SNP [dm6]	A	G	3.509e^-4	0.792	UPSTREAM CG7720 INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	9119148	3L_9119148_SNP [dm3] 3L_9126048_SNP [dm6]	A	G	3.511e^-4	0.792	UPSTREAM bol INTRON bol	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	15907687	2L_15907687_SNP [dm3] 2L_15907687_SNP [dm6]	C	T	3.517e^-4	0.792	INTRON beat-Ib
3L	2007347	3L_2007347_SNP [dm3] 3L_2007347_SNP [dm6]	A	G	3.517e^-4	0.792	INTERGENIC
2L	3144389	2L_3144389_SNP [dm3] 2L_3144389_SNP [dm6]	G	C	3.520e^-4	0.792	START_GAINED toc UTR_5_PRIME toc DOWNSTREAM CG12400	TF binding site mE1_TFBS_HSA
2L	7532808	2L_7532808_DEL [dm3] 2L_7532808_DEL [dm6]	AT	G	3.526e^-4	0.792	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14565829	2R_14565829_INS [dm3] 2R_18678324_INS [dm6]	T	TT	3.529e^-4	0.792	DOWNSTREAM CG44434 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
2L	10446079	2L_10446079_SNP [dm3] 2L_10446079_SNP [dm6]	A	T	3.531e^-4	0.792	INTRON loh
2L	13706877	2L_13706877_SNP [dm3] 2L_13706877_SNP [dm6]	G	A	3.535e^-4	0.792	INTRON CG31814
3R	12201122	3R_12201122_SNP [dm3] 3R_16375400_SNP [dm6]	A	T	3.542e^-4	0.792	UTR_3_PRIME ss	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9973443	2L_9973443_SNP [dm3] 2L_9973443_SNP [dm6]	T	A	3.544e^-4	0.792	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	10543806	3L_10543806_DEL [dm3] 3L_10550706_DEL [dm6]	AA	A	3.546e^-4	0.792	INTRON A2bp1
X	566521	X_566521_SNP [dm3] X_672488_SNP [dm6]	T	G	3.555e^-4	0.792	INTERGENIC
3R	14317776	3R_14317776_SNP [dm3] 3R_18492054_SNP [dm6]	A	T	3.570e^-4	0.792	INTRON fru
2L	19922807	2L_19922807_SNP [dm3] 2L_19922807_SNP [dm6]	T	A	3.572e^-4	0.792	UPSTREAM CR43827 DOWNSTREAM CR43828 INTRON sick
3R	14259668	3R_14259668_SNP [dm3] 3R_18433946_SNP [dm6]	T	A	3.582e^-4	0.792	INTRON fru
3L	6956305	3L_6956305_SNP [dm3] 3L_6963205_SNP [dm6]	T	A	3.583e^-4	0.792	INTRON sgl	TF binding site BDTNP1_TFBS_dl
X	12044276	X_12044276_SNP [dm3] X_12150243_SNP [dm6]	T	C	3.585e^-4	0.792	INTRON Ten-a
2L	7049216	2L_7049216_SNP [dm3] 2L_7049216_SNP [dm6]	G	C	3.593e^-4	0.792	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2L	7049229	2L_7049229_SNP [dm3] 2L_7049229_SNP [dm6]	C	T	3.593e^-4	0.792	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2L	16360616	2L_16360616_SNP [dm3] 2L_16360616_SNP [dm6]	G	C	3.593e^-4	0.792	INTERGENIC
2L	3015610	2L_3015610_SNP [dm3] 2L_3015610_SNP [dm6]	C	G	3.601e^-4	0.792	UTR_3_PRIME CG17265 DOWNSTREAM CG17224	TF binding site BDTNP1_TFBS_twi
3L	9984541	3L_9984541_SNP [dm3] 3L_9991441_SNP [dm6]	G	A	3.604e^-4	0.792	INTRON dpr6
2R	17768170	2R_17768170_SNP [dm3] 2R_21880665_SNP [dm6]	A	T	3.612e^-4	0.792	DOWNSTREAM PpN58A INTRON Fili
3R	13736221	3R_13736221_SNP [dm3] 3R_17910499_SNP [dm6]	A	T	3.616e^-4	0.792	UPSTREAM CG43445 INTRON Rim
2L	9821688	2L_9821688_SNP [dm3] 2L_9821688_SNP [dm6]	G	C	3.620e^-4	0.792	INTRON nAChRalpha6
3L	18388172	3L_18388172_SNP [dm3] 3L_18395072_SNP [dm6]	A	G	3.622e^-4	0.792	INTERGENIC
3L	11102904	3L_11102904_SNP [dm3] 3L_11109804_SNP [dm6]	C	G	3.629e^-4	0.792	UTR_5_PRIME CG7638 UPSTREAM CG34012	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	5048419	3R_5048419_DEL [dm3] 3R_9222697_DEL [dm6]	AGTA	A	3.634e^-4	0.792	INTRON pum
X	4685199	X_4685199_SNP [dm3] X_4791166_SNP [dm6]	G	T	3.636e^-4	0.792	INTERGENIC
3L	6196357	3L_6196357_SNP [dm3] 3L_6203257_SNP [dm6]	G	C	3.636e^-4	0.792	NON_SYNONYMOUS_CODING CG8219 DOWNSTREAM LanA
2L	4727677	2L_4727677_SNP [dm3] 2L_4727677_SNP [dm6]	G	T	3.638e^-4	0.792	INTERGENIC
3L	21121183	3L_21121183_SNP [dm3] 3L_21128083_SNP [dm6]	A	T	3.640e^-4	0.792	INTRON ko
3R	14086481	3R_14086481_SNP [dm3] 3R_18260759_SNP [dm6]	A	G	3.640e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	14086486	3R_14086486_SNP [dm3] 3R_18260764_SNP [dm6]	T	C	3.640e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	14086487	3R_14086487_SNP [dm3] 3R_18260765_SNP [dm6]	A	T	3.640e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	10600971	2L_10600971_SNP [dm3] 2L_10600971_SNP [dm6]	T	G	3.642e^-4	0.792	INTRON Trim9
2L	8795130	2L_8795130_SNP [dm3] 2L_8795130_SNP [dm6]	T	G	3.647e^-4	0.792	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
X	3384252	X_3384252_SNP [dm3] X_3490219_SNP [dm6]	T	A	3.653e^-4	0.792	UTR_3_PRIME CG10803 DOWNSTREAM Gas8 INTRON CR44999	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1608452	2L_1608452_SNP [dm3] 2L_1608452_SNP [dm6]	T	C	3.660e^-4	0.792	DOWNSTREAM haf INTRON CG31935
3L	13226565	3L_13226565_SNP [dm3] 3L_13233465_SNP [dm6]	C	T	3.664e^-4	0.792	INTRON caps
3R	15320898	3R_15320898_SNP [dm3] 3R_19495176_SNP [dm6]	G	A	3.664e^-4	0.792	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	7962396	X_7962396_SNP [dm3] X_8068363_SNP [dm6]	T	C	3.676e^-4	0.792	SYNONYMOUS_CODING mys	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	14379925	2L_14379925_SNP [dm3] 2L_14379925_SNP [dm6]	T	C	3.690e^-4	0.792	SYNONYMOUS_CODING ppk	TF binding site mE1_TFBS_sens
2L	2998925	2L_2998925_SNP [dm3] 2L_2998925_SNP [dm6]	T	C	3.693e^-4	0.792	UPSTREAM CG17265 DOWNSTREAM CG3558 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h
3L	10319195	3L_10319195_SNP [dm3] 3L_10326095_SNP [dm6]	C	T	3.694e^-4	0.792	UPSTREAM CR45244 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2L	787020	2L_787020_SNP [dm3] 2L_787020_SNP [dm6]	G	A	3.695e^-4	0.792	SYNONYMOUS_CODING Pkg21D UTR_3_PRIME CG3544 DOWNSTREAM CG3544	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15976887	3R_15976887_SNP [dm3] 3R_20151165_SNP [dm6]	G	A	3.705e^-4	0.792	INTERGENIC
2R	16472348	2R_16472348_SNP [dm3] 2R_20584843_SNP [dm6]	T	C	3.718e^-4	0.792	UPSTREAM mir-311 & 3 others DOWNSTREAM mir-991 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	13233183	2R_13233183_SNP [dm3] 2R_17345678_SNP [dm6]	T	A	3.726e^-4	0.792	INTRON mbl	TF binding site BDTNP1_TFBS_dl
X	12583163	X_12583163_SNP [dm3] X_12689130_SNP [dm6]	G	A	3.732e^-4	0.792	SYNONYMOUS_CODING Smr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4441337	2L_4441337_SNP [dm3] 2L_4441337_SNP [dm6]	A	C	3.738e^-4	0.792	UPSTREAM CG15431 & 1 other DOWNSTREAM Sfp24F INTERGENIC	TF binding site mE1_TFBS_Trl
2L	3471104	2L_3471104_SNP [dm3] 2L_3471104_SNP [dm6]	G	A	3.739e^-4	0.792	INTRON CG31776
2L	3471121	2L_3471121_SNP [dm3] 2L_3471121_SNP [dm6]	A	G	3.739e^-4	0.792	INTRON CG31776
3R	23917840	3R_23917840_SNP [dm3] 3R_28092118_SNP [dm6]	G	C	3.744e^-4	0.792	INTERGENIC	TF binding site mE1_TFBS_inv
3L	6976970	3L_6976970_SNP [dm3] 3L_6983870_SNP [dm6]	C	A	3.746e^-4	0.792	INTRON CG32388 & 1 other	TF binding site mE1_TFBS_sens
3L	8381953	3L_8381953_SNP [dm3] 3L_8388853_SNP [dm6]	A	G	3.748e^-4	0.792	SYNONYMOUS_CODING ImpE1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8789926	2L_8789926_SNP [dm3] 2L_8789926_SNP [dm6]	T	A	3.752e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	21413882	3R_21413882_SNP [dm3] 3R_25588160_SNP [dm6]	T	A	3.754e^-4	0.792	DOWNSTREAM mir-1000 INTRON msi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	16317921	3L_16317921_SNP [dm3] 3L_16324821_SNP [dm6]	A	G	3.755e^-4	0.792	DOWNSTREAM CG13040 & 1 other INTERGENIC
2R	15551276	2R_15551276_SNP [dm3] 2R_19663771_SNP [dm6]	C	T	3.758e^-4	0.792	DOWNSTREAM hrg & 1 other INTERGENIC
3L	3752111	3L_3752111_SNP [dm3] 3L_3752111_SNP [dm6]	A	T	3.759e^-4	0.792	INTRON CG32264
X	566183	X_566183_SNP [dm3] X_672150_SNP [dm6]	G	A	3.764e^-4	0.792	INTERGENIC
3R	5222980	3R_5222980_SNP [dm3] 3R_9397258_SNP [dm6]	G	T	3.764e^-4	0.792	UPSTREAM Or85f INTERGENIC
X	10177225	X_10177225_SNP [dm3] X_10283192_SNP [dm6]	G	A	3.772e^-4	0.792	INTRON alpha-Man-I
3R	23990854	3R_23990854_SNP [dm3] 3R_28165132_SNP [dm6]	C	T	3.779e^-4	0.792	INTRON CG34354
3R	22626199	3R_22626199_SNP [dm3] 3R_26800477_SNP [dm6]	T	C	3.818e^-4	0.792	INTRON Tl
2L	4812571	2L_4812571_SNP [dm3] 2L_4812571_SNP [dm6]	G	T	3.819e^-4	0.792	UPSTREAM CR45297 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
2L	4812572	2L_4812572_SNP [dm3] 2L_4812572_SNP [dm6]	C	A	3.819e^-4	0.792	UPSTREAM CR45297 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
2R	4398407	2R_4398407_SNP [dm3] 2R_8510902_SNP [dm6]	C	T	3.823e^-4	0.792	INTRON mtt
2L	8904994	2L_8904994_SNP [dm3] 2L_8904994_SNP [dm6]	G	T	3.823e^-4	0.792	INTRON CG34398
2R	10476060	2R_10476060_SNP [dm3] 2R_14588555_SNP [dm6]	T	A	3.825e^-4	0.792	DOWNSTREAM ttv INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	1192717	2L_1192717_DEL [dm3] 2L_1192717_DEL [dm6]	AC	A	3.825e^-4	0.792	INTRON CG5001	TF binding site mE1_TFBS_cad
2L	1192723	2L_1192723_DEL [dm3] 2L_1192723_DEL [dm6]	TGTGGTCATGTTCCTCCCAA...	C	3.825e^-4	0.792	INTRON CG5001	TF binding site mE1_TFBS_cad
2L	1192772	2L_1192772_DEL [dm3] 2L_1192772_DEL [dm6]	AGAGCCC	A	3.825e^-4	0.792	INTRON CG5001	TF binding site mE1_TFBS_cad
2L	1192780	2L_1192780_SNP [dm3] 2L_1192780_SNP [dm6]	G	C	3.825e^-4	0.792	INTRON CG5001	TF binding site mE1_TFBS_cad
2L	14976432	2L_14976432_SNP [dm3] 2L_14976432_SNP [dm6]	T	C	3.830e^-4	0.792	INTRON mol
3L	179548	3L_179548_SNP [dm3] 3L_179548_SNP [dm6]	C	T	3.831e^-4	0.792	UPSTREAM Vdup1 & 1 other INTERGENIC	TF binding site mE1_TFBS_Trl
2L	985159	2L_985159_SNP [dm3] 2L_985159_SNP [dm6]	G	A	3.833e^-4	0.792	INTERGENIC
2L	2783311	2L_2783311_SNP [dm3] 2L_2783311_SNP [dm6]	G	A	3.838e^-4	0.792	UTR_3_PRIME Syt1 INTRON Syt1
2L	3696155	2L_3696155_SNP [dm3] 2L_3696155_SNP [dm6]	C	A	3.843e^-4	0.792	UPSTREAM CG16713 DOWNSTREAM CG16712 INTERGENIC
2L	3696159	2L_3696159_SNP [dm3] 2L_3696159_SNP [dm6]	A	T	3.843e^-4	0.792	UPSTREAM CG16713 DOWNSTREAM CG16712 INTERGENIC
X	18723528	X_18723528_SNP [dm3] X_18829495_SNP [dm6]	G	A	3.848e^-4	0.792	UTR_3_PRIME CG42450
3L	16315902	3L_16315902_SNP [dm3] 3L_16322802_SNP [dm6]	C	G	3.851e^-4	0.792	UPSTREAM CG13059 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	976080	2L_976080_SNP [dm3] 2L_976080_SNP [dm6]	C	A	3.852e^-4	0.792	INTERGENIC
2L	992660	2L_992660_SNP [dm3] 2L_992660_SNP [dm6]	G	T	3.852e^-4	0.792	INTERGENIC
2L	993871	2L_993871_DEL [dm3] 2L_993871_DEL [dm6]	CGCTACA	T	3.852e^-4	0.792	INTERGENIC
2L	993879	2L_993879_SNP [dm3] 2L_993879_SNP [dm6]	G	T	3.852e^-4	0.792	INTERGENIC
2L	9088828	2L_9088828_SNP [dm3] 2L_9088828_SNP [dm6]	C	T	3.852e^-4	0.792	SYNONYMOUS_CODING Toll-4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	20864600	2L_20864600_SNP [dm3] 2L_20864600_SNP [dm6]	A	C	3.855e^-4	0.792	UPSTREAM CR9337 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	10476058	2R_10476058_SNP [dm3] 2R_14588553_SNP [dm6]	C	G	3.863e^-4	0.792	DOWNSTREAM ttv INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	11536940	3L_11536940_SNP [dm3] 3L_11543840_SNP [dm6]	G	A	3.868e^-4	0.792	INTRON Mob2
3R	12557441	3R_12557441_SNP [dm3] 3R_16731719_SNP [dm6]	G	A	3.879e^-4	0.792	INTRON Ubx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	14385835	3R_14385835_SNP [dm3] 3R_18560113_SNP [dm6]	C	T	3.881e^-4	0.792	SPLICE_SITE_REGION CG7691 INTRON CG7691
2R	6451975	2R_6451975_DEL [dm3] 2R_10564470_DEL [dm6]	TCTT	T	3.888e^-4	0.792	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	665326	3R_665326_SNP [dm3] 3R_4839604_SNP [dm6]	A	G	3.889e^-4	0.792	INTERGENIC
3L	2863051	3L_2863051_SNP [dm3] 3L_2863051_SNP [dm6]	A	T	3.895e^-4	0.792	INTRON CG43444
2L	4830810	2L_4830810_SNP [dm3] 2L_4830810_SNP [dm6]	C	T	3.898e^-4	0.792	UPSTREAM mir-4912 & 1 other DOWNSTREAM Ir25a INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3L	2792989	3L_2792989_SNP [dm3] 3L_2792989_SNP [dm6]	A	G	3.899e^-4	0.792	SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_cad
3R	24435664	3R_24435664_SNP [dm3] 3R_28609942_SNP [dm6]	A	T	3.901e^-4	0.792	INTRON CG10011	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5031163	3R_5031163_SNP [dm3] 3R_9205441_SNP [dm6]	G	T	3.901e^-4	0.792	INTRON pum
X	21139006	X_21139006_SNP [dm3] X_21267979_SNP [dm6]	A	T	3.905e^-4	0.792	INTRON CG32521
2L	13214581	2L_13214581_SNP [dm3] 2L_13214581_SNP [dm6]	A	G	3.911e^-4	0.792	NON_SYNONYMOUS_CODING kek4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	4274818	3L_4274818_SNP [dm3] 3L_4274818_SNP [dm6]	G	A	3.914e^-4	0.792	NON_SYNONYMOUS_CODING CG1273
2L	3264376	2L_3264376_SNP [dm3] 2L_3264376_SNP [dm6]	G	A	3.920e^-4	0.792	EXON CR45706	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	2443910	2L_2443910_DEL [dm3] 2L_2443910_DEL [dm6]	TATAAATGCAAGTGA...	T	3.932e^-4	0.792	INTRON dpp	enhancer FlyBase regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3R	22269428	3R_22269428_SNP [dm3] 3R_26443706_SNP [dm6]	T	A	3.955e^-4	0.792	INTRON tx
X	4112267	X_4112267_SNP [dm3] X_4218234_SNP [dm6]	T	C	3.958e^-4	0.792	SYNONYMOUS_CODING CG15570 UPSTREAM CG15571	TF binding site mE1_TFBS_sens
3R	17104259	3R_17104259_SNP [dm3] 3R_21278537_SNP [dm6]	G	T	3.959e^-4	0.792	UTR_3_PRIME SIFaR
3L	8375993	3L_8375993_DEL [dm3] 3L_8382893_DEL [dm6]	AAGCGTTACAAACGT...	A	3.960e^-4	0.792	INTRON ImpE1	TF binding site mE1_TFBS_inv
2R	18439992	2R_18439992_SNP [dm3] 2R_22552487_SNP [dm6]	T	A	3.961e^-4	0.792	DOWNSTREAM CG6018 INTRON px
3L	9640611	3L_9640611_SNP [dm3] 3L_9647511_SNP [dm6]	T	A	3.964e^-4	0.792	INTRON fry & 1 other
2L	14709112	2L_14709112_SNP [dm3] 2L_14709112_SNP [dm6]	C	T	3.966e^-4	0.792	INTERGENIC
3R	9552679	3R_9552679_SNP [dm3] 3R_13726957_SNP [dm6]	G	C	3.971e^-4	0.792	INTRON CG34383
3R	26599592	3R_26599592_SNP [dm3] 3R_30773870_SNP [dm6]	A	T	3.973e^-4	0.792	INTRON zfh1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3R	26599595	3R_26599595_SNP [dm3] 3R_30773873_SNP [dm6]	A	G	3.973e^-4	0.792	INTRON zfh1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3R	26599605	3R_26599605_SNP [dm3] 3R_30773883_SNP [dm6]	C	T	3.973e^-4	0.792	INTRON zfh1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3R	26599615	3R_26599615_SNP [dm3] 3R_30773893_SNP [dm6]	A	C	3.973e^-4	0.792	INTRON zfh1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
X	13001975	X_13001975_SNP [dm3] X_13107942_SNP [dm6]	T	C	3.973e^-4	0.792	INTRON CG43313 & 1 other
3R	22497792	3R_22497792_SNP [dm3] 3R_26672070_SNP [dm6]	T	C	3.978e^-4	0.792	INTRON beat-VII	TF binding site BDTNP1_TFBS_twi
3R	11000317	3R_11000317_SNP [dm3] 3R_15174595_SNP [dm6]	T	A	3.978e^-4	0.792	DOWNSTREAM Mf INTRON Mf & 1 other
3R	23910703	3R_23910703_SNP [dm3] 3R_28084981_SNP [dm6]	T	A	3.984e^-4	0.792	UTR_3_PRIME CG34362 INTRON CG34362
X	568279	X_568279_SNP [dm3] X_674246_SNP [dm6]	T	A	3.985e^-4	0.792	INTERGENIC
2L	12510450	2L_12510450_DEL [dm3] 2L_12510450_DEL [dm6]	GCAAAT	G	3.990e^-4	0.792	INTRON bun	TF binding site mE1_TFBS_h mE1_TFBS_HSA
2L	12510459	2L_12510459_INS [dm3] 2L_12510459_INS [dm6]	T	TA	3.990e^-4	0.792	INTRON bun	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3L	11994495	3L_11994495_SNP [dm3] 3L_12001395_SNP [dm6]	A	G	3.990e^-4	0.792	UPSTREAM Pop2 INTRON Pop2	TF binding site mE1_TFBS_HSA
3L	13257082	3L_13257082_SNP [dm3] 3L_13263982_SNP [dm6]	A	T	3.991e^-4	0.792	INTRON caps	enhancer mE1_CBP_Enhancers
3L	16900978	3L_16900978_SNP [dm3] 3L_16907878_SNP [dm6]	T	C	3.993e^-4	0.792	DOWNSTREAM Lmpt INTRON Lmpt
3L	16902964	3L_16902964_SNP [dm3] 3L_16909864_SNP [dm6]	G	C	3.993e^-4	0.792	INTRON Lmpt
3R	5046821	3R_5046821_SNP [dm3] 3R_9221099_SNP [dm6]	T	A	3.995e^-4	0.792	INTRON pum	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	11000303	3R_11000303_SNP [dm3] 3R_15174581_SNP [dm6]	A	C	3.999e^-4	0.792	DOWNSTREAM Mf INTRON Mf & 1 other
X	18441143	X_18441143_SNP [dm3] X_18547110_SNP [dm6]	T	G	4.006e^-4	0.792	INTRON Bx
2R	19057170	2R_19057170_SNP [dm3] 2R_23169647_SNP [dm6]	C	T	4.030e^-4	0.792	SPLICE_SITE_REGION CG34371 SYNONYMOUS_CODING CG34371	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	534436	X_534436_SNP [dm3] X_640403_SNP [dm6]	G	A	4.031e^-4	0.792	SYNONYMOUS_CODING su_s_	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11000335	3R_11000335_SNP [dm3] 3R_15174613_SNP [dm6]	C	A	4.040e^-4	0.792	DOWNSTREAM Mf INTRON Mf & 1 other
2L	3827098	2L_3827098_SNP [dm3] 2L_3827098_SNP [dm6]	A	T	4.042e^-4	0.792	UTR_3_PRIME slp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3L	611482	3L_611482_SNP [dm3] 3L_611482_SNP [dm6]	T	G	4.059e^-4	0.792	INTERGENIC
2L	8663685	2L_8663685_SNP [dm3] 2L_8663685_SNP [dm6]	T	A	4.063e^-4	0.792	INTRON Sema-1a
3R	16016134	3R_16016134_SNP [dm3] 3R_20190412_SNP [dm6]	C	T	4.072e^-4	0.792	INTERGENIC
2L	20984097	2L_20984097_SNP [dm3] 2L_20984097_SNP [dm6]	G	A	4.076e^-4	0.792	INTRON CG42238
2R	7722354	2R_7722354_SNP [dm3] 2R_11834849_SNP [dm6]	G	A	4.081e^-4	0.792	INTRON Sobp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6034843	3R_6034843_DEL [dm3] 3R_10209121_DEL [dm6]	TTACT	T	4.082e^-4	0.792	INTRON Syn & 1 other
3L	9170945	3L_9170945_SNP [dm3] 3L_9177845_SNP [dm6]	C	T	4.083e^-4	0.792	UTR_5_PRIME Rdl UPSTREAM Rdl
2L	10347947	2L_10347947_SNP [dm3] 2L_10347947_SNP [dm6]	T	C	4.085e^-4	0.792	UTR_3_PRIME CG34367 DOWNSTREAM CG5022	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	11536866	3L_11536866_SNP [dm3] 3L_11543766_SNP [dm6]	T	G	4.093e^-4	0.792	INTRON Mob2
3L	11536867	3L_11536867_SNP [dm3] 3L_11543767_SNP [dm6]	T	A	4.093e^-4	0.792	INTRON Mob2
3R	11000304	3R_11000304_SNP [dm3] 3R_15174582_SNP [dm6]	A	T	4.094e^-4	0.792	DOWNSTREAM Mf INTRON Mf & 1 other
2L	9997682	2L_9997682_SNP [dm3] 2L_9997682_SNP [dm6]	G	T	4.098e^-4	0.792	NON_SYNONYMOUS_CODING SoYb INTRON CG31875	TF binding site mE1_TFBS_sens
2R	4213409	2R_4213409_SNP [dm3] 2R_8325904_SNP [dm6]	A	G	4.120e^-4	0.792	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	23926713	3R_23926713_SNP [dm3] 3R_28100991_SNP [dm6]	C	T	4.120e^-4	0.792	INTERGENIC
3L	9984525	3L_9984525_DEL [dm3] 3L_9991425_DEL [dm6]	AA	A	4.132e^-4	0.792	INTRON dpr6
3R	23490526	3R_23490526_SNP [dm3] 3R_27664804_SNP [dm6]	G	A	4.134e^-4	0.792	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	2163711	2L_2163711_SNP [dm3] 2L_2163711_SNP [dm6]	C	A	4.134e^-4	0.792	INTRON aop	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2R	12342392	2R_12342392_SNP [dm3] 2R_16454887_SNP [dm6]	G	T	4.138e^-4	0.792	INTERGENIC
3R	23834495	3R_23834495_SNP [dm3] 3R_28008773_SNP [dm6]	G	C	4.138e^-4	0.792	INTERGENIC
2L	14405626	2L_14405626_SNP [dm3] 2L_14405626_SNP [dm6]	T	A	4.139e^-4	0.792	INTRON elB	TF binding site mE1_TFBS_cad
2L	3481521	2L_3481521_SNP [dm3] 2L_3481521_SNP [dm6]	T	G	4.148e^-4	0.792	SYNONYMOUS_CODING CG15414	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	7629194	2R_7629194_SNP [dm3] 2R_11741689_SNP [dm6]	T	G	4.150e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	21195546	2L_21195546_SNP [dm3] 2L_21195546_SNP [dm6]	G	A	4.151e^-4	0.792	INTRON Ret
X	21141920	X_21141920_SNP [dm3] X_21270893_SNP [dm6]	C	T	4.155e^-4	0.792	INTRON CG32521
3L	811708	3L_811708_SNP [dm3] 3L_811708_SNP [dm6]	T	C	4.160e^-4	0.792	INTERGENIC
2L	6019100	2L_6019100_SNP [dm3] 2L_6019100_SNP [dm6]	G	T	4.165e^-4	0.792	NON_SYNONYMOUS_CODING H2.0	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_sens
3L	809259	3L_809259_SNP [dm3] 3L_809259_SNP [dm6]	A	T	4.167e^-4	0.792	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	15167256	2L_15167256_SNP [dm3] 2L_15167256_SNP [dm6]	G	A	4.173e^-4	0.792	NON_SYNONYMOUS_CODING CG4168
2L	9101501	2L_9101501_SNP [dm3] 2L_9101501_SNP [dm6]	A	G	4.175e^-4	0.792	INTERGENIC
2L	2807295	2L_2807295_SNP [dm3] 2L_2807295_SNP [dm6]	G	A	4.185e^-4	0.792	INTRON daw	TF binding site BDTNP1_TFBS_dl
X	6422740	X_6422740_SNP [dm3] X_6528707_SNP [dm6]	T	A	4.190e^-4	0.792	UPSTREAM CG3342 & 1 other INTERGENIC
2L	4025303	2L_4025303_SNP [dm3] 2L_4025303_SNP [dm6]	C	A	4.194e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	1607143	2L_1607143_SNP [dm3] 2L_1607143_SNP [dm6]	G	A	4.196e^-4	0.792	UTR_3_PRIME haf INTRON CG31935	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13675985	2L_13675985_SNP [dm3] 2L_13675985_SNP [dm6]	A	G	4.200e^-4	0.792	DOWNSTREAM CG31814 INTERGENIC
2R	13848503	2R_13848503_SNP [dm3] 2R_17960998_SNP [dm6]	A	G	4.201e^-4	0.792	INTERGENIC
2L	16572554	2L_16572554_SNP [dm3] 2L_16572554_SNP [dm6]	T	G	4.203e^-4	0.792	INTRON CG42389
2L	13675014	2L_13675014_SNP [dm3] 2L_13675014_SNP [dm6]	G	T	4.210e^-4	0.792	INTERGENIC
2R	16028629	2R_16028629_SNP [dm3] 2R_20141124_SNP [dm6]	A	T	4.211e^-4	0.792	INTERGENIC
2L	2207548	2L_2207548_SNP [dm3] 2L_2207548_SNP [dm6]	G	C	4.213e^-4	0.792	INTRON CG33124
2L	10144116	2L_10144116_SNP [dm3] 2L_10144116_SNP [dm6]	C	T	4.215e^-4	0.792	UPSTREAM CG4839 INTRON CG44153
2L	4580044	2L_4580044_SNP [dm3] 2L_4580044_SNP [dm6]	G	C	4.229e^-4	0.792	INTRON dp
2R	8438773	2R_8438773_SNP [dm3] 2R_12551268_SNP [dm6]	G	A	4.236e^-4	0.792	INTRON fra
3L	21073786	3L_21073786_SNP [dm3] 3L_21080686_SNP [dm6]	T	C	4.248e^-4	0.792	INTRON ko	TF binding site BDTNP1_TFBS_da
2L	1009007	2L_1009007_SNP [dm3] 2L_1009007_SNP [dm6]	C	T	4.249e^-4	0.792	UTR_3_PRIME IA-2
3R	14533972	3R_14533972_SNP [dm3] 3R_18708250_SNP [dm6]	A	G	4.254e^-4	0.792	INTRON VAChT & 1 other
3L	798565	3L_798565_SNP [dm3] 3L_798565_SNP [dm6]	G	T	4.260e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	6793866	3L_6793866_SNP [dm3] 3L_6800766_SNP [dm6]	T	G	4.265e^-4	0.792	INTERGENIC
X	6455613	X_6455613_SNP [dm3] X_6561580_SNP [dm6]	A	T	4.265e^-4	0.792	INTRON CG34417	TF binding site mE1_TFBS_sens
3R	22443163	3R_22443163_SNP [dm3] 3R_26617441_SNP [dm6]	A	T	4.266e^-4	0.792	INTERGENIC
3R	25288774	3R_25288774_SNP [dm3] 3R_29463052_SNP [dm6]	T	G	4.269e^-4	0.792	INTRON Ptp99A
3L	16887368	3L_16887368_SNP [dm3] 3L_16894268_SNP [dm6]	G	C	4.272e^-4	0.792	INTRON Lmpt
3L	16891300	3L_16891300_SNP [dm3] 3L_16898200_SNP [dm6]	A	G	4.272e^-4	0.792	INTRON Lmpt	TF binding site mE1_TFBS_cad
3L	16891333	3L_16891333_SNP [dm3] 3L_16898233_SNP [dm6]	T	A	4.272e^-4	0.792	INTRON Lmpt
3R	10456018	3R_10456018_SNP [dm3] 3R_14630296_SNP [dm6]	G	A	4.275e^-4	0.792	UPSTREAM Cad88C INTRON CG7886	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	7629177	2R_7629177_SNP [dm3] 2R_11741672_SNP [dm6]	T	A	4.277e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15032908	2L_15032908_SNP [dm3] 2L_15032908_SNP [dm6]	A	T	4.283e^-4	0.792	UTR_3_PRIME GABA-B-R1
2R	2707273	2R_2707273_SNP [dm3] 2R_6819768_SNP [dm6]	T	C	4.286e^-4	0.792	DOWNSTREAM CR44442 INTERGENIC
2L	4829444	2L_4829444_SNP [dm3] 2L_4829444_SNP [dm6]	A	C	4.287e^-4	0.792	UTR_3_PRIME CG2976 DOWNSTREAM CG15628 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	22627362	3R_22627362_SNP [dm3] 3R_26801640_SNP [dm6]	A	T	4.289e^-4	0.792	INTRON Tl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	9997678	2L_9997678_SNP [dm3] 2L_9997678_SNP [dm6]	G	C	4.294e^-4	0.792	NON_SYNONYMOUS_CODING SoYb INTRON CG31875	TF binding site mE1_TFBS_sens
3L	4840210	3L_4840210_SNP [dm3] 3L_4840210_SNP [dm6]	C	T	4.315e^-4	0.792	UPSTREAM CG13707 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	3563440	2L_3563440_SNP [dm3] 2L_3563440_SNP [dm6]	C	T	4.321e^-4	0.792	DOWNSTREAM CR44309 EXON CR44747	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	569471	X_569471_SNP [dm3] X_675438_SNP [dm6]	A	T	4.324e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	20273013	2R_20273013_SNP [dm3] 2R_24385490_SNP [dm6]	C	A	4.326e^-4	0.792	INTRON mAChR-A
X	20184593	X_20184593_SNP [dm3] X_20313566_SNP [dm6]	T	A	4.329e^-4	0.792	INTRON CG1504
3L	6471151	3L_6471151_SNP [dm3] 3L_6478051_SNP [dm6]	C	T	4.335e^-4	0.792	INTRON CG42747
2L	8789922	2L_8789922_SNP [dm3] 2L_8789922_SNP [dm6]	G	A	4.356e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	2881988	2L_2881988_SNP [dm3] 2L_2881988_SNP [dm6]	G	A	4.360e^-4	0.792	SYNONYMOUS_CODING NTPase	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	3638137	X_3638137_SNP [dm3] X_3744104_SNP [dm6]	T	C	4.363e^-4	0.792	INTRON tlk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	12919659	2L_12919659_SNP [dm3] 2L_12919659_SNP [dm6]	G	A	4.364e^-4	0.792	SYNONYMOUS_CODING ACXB
2L	706978	2L_706978_SNP [dm3] 2L_706978_SNP [dm6]	T	C	4.375e^-4	0.792	SYNONYMOUS_CODING ds	TF binding site mE1_TFBS_HSA
2L	5855265	2L_5855265_SNP [dm3] 2L_5855265_SNP [dm6]	A	G	4.376e^-4	0.792	INTRON TrissinR
2R	5214312	2R_5214312_INS [dm3] 2R_9326807_INS [dm6]	G	GAAATACACATAAATACATG...	4.379e^-4	0.792	INTRON CG13954 & 1 other
3R	27132333	3R_27132333_SNP [dm3] 3R_31306611_SNP [dm6]	T	A	4.394e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	4135933	3L_4135933_SNP [dm3] 3L_4135933_SNP [dm6]	C	G	4.400e^-4	0.792	SYNONYMOUS_CODING RfC4 DOWNSTREAM Rop	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3R	23164658	3R_23164658_SNP [dm3] 3R_27338936_SNP [dm6]	A	G	4.406e^-4	0.792	INTERGENIC
3R	23022125	3R_23022125_SNP [dm3] 3R_27196403_SNP [dm6]	C	A	4.407e^-4	0.792	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3L	5777171	3L_5777171_SNP [dm3] 3L_5784071_SNP [dm6]	G	A	4.412e^-4	0.792	SYNONYMOUS_CODING Cralbp UTR_3_PRIME Pmi & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25128488	3R_25128488_SNP [dm3] 3R_29302766_SNP [dm6]	T	G	4.434e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12447446	2L_12447446_SNP [dm3] 2L_12447446_SNP [dm6]	G	C	4.450e^-4	0.792	INTRON CG5421
3L	605020	3L_605020_SNP [dm3] 3L_605020_SNP [dm6]	T	A	4.453e^-4	0.792	DOWNSTREAM Reg-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	14413176	X_14413176_SNP [dm3] X_14519143_SNP [dm6]	T	C	4.453e^-4	0.792	EXON CR44110
3R	23164292	3R_23164292_SNP [dm3] 3R_27338570_SNP [dm6]	C	T	4.457e^-4	0.792	INTERGENIC
2L	14399959	2L_14399959_SNP [dm3] 2L_14399959_SNP [dm6]	A	G	4.458e^-4	0.792	INTRON elB
2L	1238081	2L_1238081_SNP [dm3] 2L_1238081_SNP [dm6]	C	A	4.459e^-4	0.792	INTERGENIC
X	3471634	X_3471634_SNP [dm3] X_3577601_SNP [dm6]	A	G	4.467e^-4	0.792	INTRON AstA-R1
2L	11230828	2L_11230828_SNP [dm3] 2L_11230828_SNP [dm6]	A	T	4.468e^-4	0.792	INTRON ab
3L	5387646	3L_5387646_SNP [dm3] 3L_5394546_SNP [dm6]	G	A	4.474e^-4	0.792	INTERGENIC
3L	16891320	3L_16891320_SNP [dm3] 3L_16898220_SNP [dm6]	C	A	4.481e^-4	0.792	INTRON Lmpt
3R	25718698	3R_25718698_SNP [dm3] 3R_29892976_SNP [dm6]	A	T	4.489e^-4	0.792	INTRON CG31038
X	18900694	X_18900694_INS [dm3] X_19006661_INS [dm6]	C	CCCTC	4.493e^-4	0.792	INTRON CG43759
3L	13094172	3L_13094172_SNP [dm3] 3L_13101072_SNP [dm6]	C	T	4.501e^-4	0.792	DOWNSTREAM CR44554 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6782655	2R_6782655_SNP [dm3] 2R_10895150_SNP [dm6]	G	T	4.502e^-4	0.792	UPSTREAM cag INTRON CG12942	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	6782688	2R_6782688_SNP [dm3] 2R_10895183_SNP [dm6]	A	C	4.502e^-4	0.792	UPSTREAM cag INTRON CG12942	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6782963	2R_6782963_SNP [dm3] 2R_10895458_SNP [dm6]	A	C	4.502e^-4	0.792	NON_SYNONYMOUS_CODING CG12942	TF binding site mE1_TFBS_sens
X	13062542	X_13062542_SNP [dm3] X_13168509_SNP [dm6]	A	C	4.506e^-4	0.792	INTRON CG34411
X	10263102	X_10263102_SNP [dm3] X_10369069_SNP [dm6]	A	T	4.511e^-4	0.792	INTRON CG17841	TF binding site mE1_TFBS_HSA
3R	22633649	3R_22633649_SNP [dm3] 3R_26807927_SNP [dm6]	C	T	4.516e^-4	0.792	INTRON Tl
3L	16891235	3L_16891235_SNP [dm3] 3L_16898135_SNP [dm6]	C	T	4.516e^-4	0.792	INTRON Lmpt	TF binding site mE1_TFBS_cad
2L	21194901	2L_21194901_SNP [dm3] 2L_21194901_SNP [dm6]	T	G	4.523e^-4	0.792	INTRON Ret
3L	18921923	3L_18921923_SNP [dm3] 3L_18928823_SNP [dm6]	G	T	4.524e^-4	0.792	INTRON CG32204
3L	18921925	3L_18921925_SNP [dm3] 3L_18928825_SNP [dm6]	G	A	4.524e^-4	0.792	INTRON CG32204
3R	16639728	3R_16639728_SNP [dm3] 3R_20814006_SNP [dm6]	C	T	4.532e^-4	0.792	SYNONYMOUS_CODING Fancd2
3L	2145586	3L_2145586_SNP [dm3] 3L_2145586_SNP [dm6]	G	C	4.538e^-4	0.792	INTRON zormin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14938328	2R_14938328_SNP [dm3] 2R_19050823_SNP [dm6]	T	C	4.543e^-4	0.792	INTERGENIC
2L	16911076	2L_16911076_SNP [dm3] 2L_16911076_SNP [dm6]	T	G	4.546e^-4	0.792	SYNONYMOUS_CODING tweek UPSTREAM ApepP	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	25486108	3R_25486108_SNP [dm3] 3R_29660386_SNP [dm6]	T	A	4.553e^-4	0.792	UPSTREAM Dop1R2 INTERGENIC
2L	2633508	2L_2633508_SNP [dm3] 2L_2633508_SNP [dm6]	A	T	4.556e^-4	0.792	INTERGENIC
3R	9308261	3R_9308261_SNP [dm3] 3R_13482539_SNP [dm6]	C	T	4.562e^-4	0.792	INTERGENIC
2L	2827074	2L_2827074_SNP [dm3] 2L_2827074_SNP [dm6]	A	G	4.572e^-4	0.792	INTRON Duox
3L	13973385	3L_13973385_SNP [dm3] 3L_13980285_SNP [dm6]	T	C	4.577e^-4	0.792	DOWNSTREAM CG17364 INTRON CG17364	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	16891348	3L_16891348_SNP [dm3] 3L_16898248_SNP [dm6]	G	A	4.578e^-4	0.792	INTRON Lmpt
3L	16891352	3L_16891352_SNP [dm3] 3L_16898252_SNP [dm6]	G	A	4.578e^-4	0.792	INTRON Lmpt
3L	5241215	3L_5241215_SNP [dm3] 3L_5248115_SNP [dm6]	G	T	4.578e^-4	0.792	INTRON shep	TF binding site mE1_TFBS_eve
2L	14983302	2L_14983302_SNP [dm3] 2L_14983302_SNP [dm6]	C	A	4.582e^-4	0.792	INTRON mol
3L	20157548	3L_20157548_SNP [dm3] 3L_20164448_SNP [dm6]	A	G	4.583e^-4	0.792	INTRON CG42674
3L	9514260	3L_9514260_SNP [dm3] 3L_9521160_SNP [dm6]	T	A	4.585e^-4	0.792	INTRON CG33700

By genomic position
Variant impact
Gene name

mn_Aggressi_Isolated phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results