DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=9.755e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2067 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	5306725	3R_5306725_SNP [dm3] 3R_9481003_SNP [dm6]	C	T	1.519e^-7	0.277	INTRON CG16779
X	2868198	X_2868198_SNP [dm3] X_2974165_SNP [dm6]	T	C	1.117e^-6	0.831	UPSTREAM rst INTRON kirre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6089662	3L_6089662_SNP [dm3] 3L_6096562_SNP [dm6]	A	C	1.868e^-6	0.831	DOWNSTREAM loj INTERGENIC
3R	24676976	3R_24676976_SNP [dm3] 3R_28851254_SNP [dm6]	G	A	2.036e^-6	0.831	INTRON spg
3R	27118947	3R_27118947_SNP [dm3] 3R_31293225_SNP [dm6]	G	C	2.681e^-6	0.831	INTERGENIC
3R	24677074	3R_24677074_SNP [dm3] 3R_28851352_SNP [dm6]	A	T	2.839e^-6	0.831	INTRON spg
3R	26039034	3R_26039034_SNP [dm3] 3R_30213312_SNP [dm6]	A	T	4.149e^-6	0.831	DOWNSTREAM CecB & 2 others INTERGENIC
3R	6750442	3R_6750442_SNP [dm3] 3R_10924720_SNP [dm6]	A	G	4.321e^-6	0.831	INTERGENIC
3R	26039032	3R_26039032_SNP [dm3] 3R_30213310_SNP [dm6]	T	A	4.740e^-6	0.831	DOWNSTREAM CecB & 2 others INTERGENIC
3L	6609595	3L_6609595_SNP [dm3] 3L_6616495_SNP [dm6]	C	T	5.188e^-6	0.831	SYNONYMOUS_CODING CG8398	TF binding site mE1_TFBS_cad
3R	19027347	3R_19027347_SNP [dm3] 3R_23201625_SNP [dm6]	C	G	6.209e^-6	0.831	UPSTREAM cnc DOWNSTREAM fzo INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	874095	3L_874095_SNP [dm3] 3L_874095_SNP [dm6]	C	G	6.700e^-6	0.831	SYNONYMOUS_CODING CG32479	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3278322	3L_3278322_SNP [dm3] 3L_3278322_SNP [dm6]	C	T	7.999e^-6	0.831	INTERGENIC
X	2868054	X_2868054_SNP [dm3] X_2974021_SNP [dm6]	G	T	8.466e^-6	0.831	UPSTREAM rst INTRON kirre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6720707	3R_6720707_SNP [dm3] 3R_10894985_SNP [dm6]	G	C	8.699e^-6	0.831	SYNONYMOUS_CODING Leash	TF binding site mE1_TFBS_chinmo
3R	26039059	3R_26039059_SNP [dm3] 3R_30213337_SNP [dm6]	G	C	9.236e^-6	0.831	UTR_3_PRIME CecB DOWNSTREAM CecA2 & 1 other
X	2868096	X_2868096_SNP [dm3] X_2974063_SNP [dm6]	T	C	9.549e^-6	0.831	UPSTREAM rst INTRON kirre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8081122	3L_8081122_SNP [dm3] 3L_8088022_SNP [dm6]	T	C	9.783e^-6	0.831	SYNONYMOUS_CODING CG7565 INTRON Ect4
3L	3083555	3L_3083555_SNP [dm3] 3L_3083555_SNP [dm6]	G	A	1.036e^-5	0.831	INTRON CG11486	TF binding site mE1_TFBS_Trl
3L	874818	3L_874818_SNP [dm3] 3L_874818_SNP [dm6]	A	C	1.058e^-5	0.831	SYNONYMOUS_CODING CG32479	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3083546	3L_3083546_SNP [dm3] 3L_3083546_SNP [dm6]	G	T	1.168e^-5	0.831	INTRON CG11486	TF binding site mE1_TFBS_Trl
3R	10700487	3R_10700487_DEL [dm3] 3R_14874765_DEL [dm6]	AA	A	1.270e^-5	0.831	INTRON btsz
2L	8944866	2L_8944866_SNP [dm3] 2L_8944866_SNP [dm6]	A	C	1.274e^-5	0.831	SYNONYMOUS_CODING C1GalTA	TF binding site mE1_TFBS_cad
3R	14742088	3R_14742088_SNP [dm3] 3R_18916366_SNP [dm6]	C	G	1.312e^-5	0.831	INTRON Xrp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc
3L	6090003	3L_6090003_SNP [dm3] 3L_6096903_SNP [dm6]	C	G	1.380e^-5	0.831	UPSTREAM Ets65A DOWNSTREAM loj INTERGENIC	TF binding site mE1_TFBS_cad
3R	6778319	3R_6778319_SNP [dm3] 3R_10952597_SNP [dm6]	A	T	1.496e^-5	0.831	DOWNSTREAM Tengl4 INTERGENIC
3R	27131721	3R_27131721_SNP [dm3] 3R_31305999_SNP [dm6]	C	G	1.507e^-5	0.831	UPSTREAM CG11340 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24676998	3R_24676998_SNP [dm3] 3R_28851276_SNP [dm6]	T	C	1.525e^-5	0.831	INTRON spg
3L	7687182	3L_7687182_INS [dm3] 3L_7694082_INS [dm6]	A	AAAA	1.566e^-5	0.831	INTRON CG32373 & 2 others
X	2868155	X_2868155_SNP [dm3] X_2974122_SNP [dm6]	A	T	1.626e^-5	0.831	UPSTREAM rst INTRON kirre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6723169	3R_6723169_SNP [dm3] 3R_10897447_SNP [dm6]	T	A	1.687e^-5	0.831	UPSTREAM CR45577 DOWNSTREAM CR45578 INTERGENIC
3R	6723171	3R_6723171_SNP [dm3] 3R_10897449_SNP [dm6]	A	G	1.687e^-5	0.831	UPSTREAM CR45577 DOWNSTREAM CR45578 INTERGENIC
X	2868142	X_2868142_SNP [dm3] X_2974109_SNP [dm6]	T	C	1.689e^-5	0.831	UPSTREAM rst INTRON kirre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1863369	3L_1863369_SNP [dm3] 3L_1863369_SNP [dm6]	T	C	1.759e^-5	0.831	SYNONYMOUS_CODING HBS1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	6089961	3L_6089961_SNP [dm3] 3L_6096861_SNP [dm6]	A	G	1.855e^-5	0.831	UPSTREAM Ets65A DOWNSTREAM loj INTERGENIC	TF binding site mE1_TFBS_cad
2L	1626353	2L_1626353_SNP [dm3] 2L_1626353_SNP [dm6]	C	T	1.943e^-5	0.831	UPSTREAM CR44603 INTERGENIC
3L	17148367	3L_17148367_SNP [dm3] 3L_17155267_SNP [dm6]	A	T	1.980e^-5	0.831	INTRON Rbp6	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	22140552	2L_22140552_SNP [dm3] 2L_22140552_SNP [dm6]	C	T	2.002e^-5	0.831	INTRON CG42748	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	19811568	3R_19811568_SNP [dm3] 3R_23985846_SNP [dm6]	A	G	2.008e^-5	0.831	UPSTREAM CG5902 DOWNSTREAM CR31451 INTRON CG13603	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	5175317	3L_5175317_SNP [dm3] 3L_5182217_SNP [dm6]	G	A	2.034e^-5	0.831	INTRON shep
3L	15176751	3L_15176751_SNP [dm3] 3L_15183651_SNP [dm6]	T	C	2.043e^-5	0.831	INTERGENIC
X	2868156	X_2868156_SNP [dm3] X_2974123_SNP [dm6]	T	A	2.115e^-5	0.831	UPSTREAM rst INTRON kirre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14742138	3R_14742138_SNP [dm3] 3R_18916416_SNP [dm6]	A	T	2.162e^-5	0.831	INTRON Xrp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc
3L	10155961	3L_10155961_SNP [dm3] 3L_10162861_SNP [dm6]	G	T	2.184e^-5	0.831	INTRON dpr10
3R	26039023	3R_26039023_SNP [dm3] 3R_30213301_SNP [dm6]	C	T	2.354e^-5	0.831	DOWNSTREAM CecB & 2 others INTERGENIC
3L	838910	3L_838910_SNP [dm3] 3L_838910_SNP [dm6]	G	A	2.442e^-5	0.831	INTRON CG13887	TF binding site mE1_TFBS_inv
3R	14742137	3R_14742137_SNP [dm3] 3R_18916415_SNP [dm6]	A	G	2.450e^-5	0.831	INTRON Xrp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc
X	14572368	X_14572368_SNP [dm3] X_14678335_SNP [dm6]	C	T	2.608e^-5	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11426180	3L_11426180_SNP [dm3] 3L_11433080_SNP [dm6]	A	G	2.665e^-5	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	2868184	X_2868184_SNP [dm3] X_2974151_SNP [dm6]	G	A	2.675e^-5	0.831	UPSTREAM rst INTRON kirre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2868170	X_2868170_SNP [dm3] X_2974137_SNP [dm6]	T	A	2.816e^-5	0.831	UPSTREAM rst INTRON kirre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11727955	X_11727955_SNP [dm3] X_11833922_SNP [dm6]	A	G	2.943e^-5	0.831	UTR_3_PRIME rudhira DOWNSTREAM rudhira INTRON rudhira
X	2868236	X_2868236_SNP [dm3] X_2974203_SNP [dm6]	T	G	2.943e^-5	0.831	UPSTREAM rst INTRON kirre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18922403	2R_18922403_SNP [dm3] 2R_23034880_SNP [dm6]	A	G	3.079e^-5	0.831	INTRON twi & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	20656368	3R_20656368_SNP [dm3] 3R_24830646_SNP [dm6]	A	C	3.079e^-5	0.831	NON_SYNONYMOUS_CODING CG43273 UTR_5_PRIME CG43273 UPSTREAM CG31357	TF binding site BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
3L	3794967	3L_3794967_DEL [dm3] 3L_3794967_DEL [dm6]	TG	C	3.081e^-5	0.831	UPSTREAM CG32264 INTRON CG32264
3R	6749459	3R_6749459_SNP [dm3] 3R_10923737_SNP [dm6]	G	A	3.217e^-5	0.831	INTERGENIC
3L	8876119	3L_8876119_SNP [dm3] 3L_8883019_SNP [dm6]	A	C	3.320e^-5	0.831	INTRON dally
3L	5175312	3L_5175312_SNP [dm3] 3L_5182212_SNP [dm6]	T	C	3.342e^-5	0.831	INTRON shep
3R	14739052	3R_14739052_SNP [dm3] 3R_18913330_SNP [dm6]	T	A	3.350e^-5	0.831	UPSTREAM CG14291 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
3L	882969	3L_882969_SNP [dm3] 3L_882969_SNP [dm6]	A	C	3.582e^-5	0.831	UPSTREAM CG13907 INTRON CG32479	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	13288685	3L_13288685_DEL [dm3] 3L_13295585_DEL [dm6]	CC	C	3.626e^-5	0.831	DOWNSTREAM Sfp70A4 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14739298	3R_14739298_SNP [dm3] 3R_18913576_SNP [dm6]	G	A	3.631e^-5	0.831	UPSTREAM CG14291 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	2327612	2L_2327612_SNP [dm3] 2L_2327612_SNP [dm6]	A	G	3.685e^-5	0.831	INTRON CG9967 & 1 other
3R	27068931	3R_27068931_INS [dm3] 3R_31243209_INS [dm6]	A	AA	3.734e^-5	0.831	INTRON qless
X	12155168	X_12155168_DEL [dm3] X_12261135_DEL [dm6]	AACCCACGACGAC...	T	3.748e^-5	0.831	INTRON Ten-a	TF binding site mE1_TFBS_sens
2L	18365404	2L_18365404_SNP [dm3] 2L_18365404_SNP [dm6]	G	C	3.748e^-5	0.831	INTRON Fas3
2R	16770107	2R_16770107_INS [dm3] 2R_20882602_INS [dm6]	A	AA	3.755e^-5	0.831	UTR_3_PRIME Cib2
3L	9259055	3L_9259055_SNP [dm3] 3L_9265955_SNP [dm6]	T	A	3.775e^-5	0.831	INTRON GluRIB
2L	13106651	2L_13106651_SNP [dm3] 2L_13106651_SNP [dm6]	T	A	3.958e^-5	0.831	UPSTREAM CG5142 INTERGENIC
X	20874152	X_20874152_INS [dm3] X_21003125_INS [dm6]	T	TT	4.007e^-5	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4096378	3R_4096378_SNP [dm3] 3R_8270656_SNP [dm6]	T	C	4.038e^-5	0.831	UPSTREAM CG9630 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	12606299	3L_12606299_SNP [dm3] 3L_12613199_SNP [dm6]	A	T	4.090e^-5	0.831	INTRON caup	silencer mE1_HDAC_PRE
3L	874627	3L_874627_SNP [dm3] 3L_874627_SNP [dm6]	C	T	4.093e^-5	0.831	SYNONYMOUS_CODING CG32479	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	6723020	3R_6723020_SNP [dm3] 3R_10897298_SNP [dm6]	T	G	4.187e^-5	0.831	UPSTREAM CR45577 DOWNSTREAM Leash & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_sna
2R	17568895	2R_17568895_SNP [dm3] 2R_21681390_SNP [dm6]	C	G	4.339e^-5	0.831	INTRON CG30263
2L	22111021	2L_22111021_SNP [dm3] 2L_22111021_SNP [dm6]	T	G	4.345e^-5	0.831	DOWNSTREAM CG6675 INTERGENIC	transposable element FlyBase
3L	12606326	3L_12606326_SNP [dm3] 3L_12613226_SNP [dm6]	A	G	4.348e^-5	0.831	INTRON caup	silencer mE1_HDAC_PRE
3R	14742164	3R_14742164_SNP [dm3] 3R_18916442_SNP [dm6]	C	T	4.486e^-5	0.831	INTRON Xrp1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc
X	8216908	X_8216908_SNP [dm3] X_8322875_SNP [dm6]	G	A	4.513e^-5	0.831	INTRON nAChRalpha3
2R	8778822	2R_8778822_SNP [dm3] 2R_12891317_SNP [dm6]	A	T	4.518e^-5	0.831	INTRON vg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	23744455	3R_23744455_SNP [dm3] 3R_27918733_SNP [dm6]	G	T	4.535e^-5	0.831	NON_SYNONYMOUS_CODING CG33213 DOWNSTREAM mRpS22	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	10617558	3R_10617558_SNP [dm3] 3R_14791836_SNP [dm6]	G	T	4.600e^-5	0.831	UTR_3_PRIME jvl INTRON jvl
3R	19027374	3R_19027374_SNP [dm3] 3R_23201652_SNP [dm6]	G	A	4.612e^-5	0.831	UTR_3_PRIME fzo UPSTREAM cnc INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	22270711	3L_22270711_SNP [dm3] 3L_22277611_SNP [dm6]	A	C	4.629e^-5	0.831	UTR_5_PRIME srpk79D UPSTREAM srpk79D INTRON srpk79D	TF binding site mE1_TFBS_chinmo
3L	18670929	3L_18670929_SNP [dm3] 3L_18677829_SNP [dm6]	C	A	4.641e^-5	0.831	UTR_3_PRIME GNBP1
X	15488966	X_15488966_SNP [dm3] X_15594933_SNP [dm6]	A	T	4.695e^-5	0.831	INTERGENIC	TF binding site mE1_TFBS_bab1
3L	11336444	3L_11336444_INS [dm3] 3L_11343344_INS [dm6]	T	TGAGAATATTAATCTTT...	4.748e^-5	0.831	DOWNSTREAM CR45250 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	10053439	3R_10053439_SNP [dm3] 3R_14227717_SNP [dm6]	G	T	4.768e^-5	0.831	UPSTREAM CG9631 DOWNSTREAM CG9624 INTERGENIC
3R	6696466	3R_6696466_SNP [dm3] 3R_10870744_SNP [dm6]	C	T	4.845e^-5	0.831	DOWNSTREAM Fdh & 1 other INTERGENIC
3L	20085887	3L_20085887_DEL [dm3] 3L_20092787_DEL [dm6]	CCCACTGTATGGGCTCAC...	C	4.893e^-5	0.831	INTERGENIC
3L	872319	3L_872319_SNP [dm3] 3L_872319_SNP [dm6]	C	T	4.949e^-5	0.831	UPSTREAM CG32479 DOWNSTREAM CG12502 INTRON CG32479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8779597	2R_8779597_SNP [dm3] 2R_12892092_SNP [dm6]	A	C	4.991e^-5	0.831	INTRON vg	TF binding site mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3L	18717414	3L_18717414_SNP [dm3] 3L_18724314_SNP [dm6]	A	G	5.017e^-5	0.831	DOWNSTREAM CR43985 INTERGENIC
3L	11336512	3L_11336512_SNP [dm3] 3L_11343412_SNP [dm6]	G	C	5.128e^-5	0.831	DOWNSTREAM CR45250 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	16404730	2L_16404730_SNP [dm3] 2L_16404730_SNP [dm6]	C	A	5.217e^-5	0.831	SYNONYMOUS_CODING CG5888
3L	3075326	3L_3075326_SNP [dm3] 3L_3075326_SNP [dm6]	C	A	5.292e^-5	0.831	INTRON CG11486	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
3L	3075563	3L_3075563_SNP [dm3] 3L_3075563_SNP [dm6]	C	G	5.292e^-5	0.831	INTRON CG11486	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16155890	2R_16155890_SNP [dm3] 2R_20268385_SNP [dm6]	G	A	5.296e^-5	0.831	SYNONYMOUS_CODING CG8908	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9456239	2R_9456239_SNP [dm3] 2R_13568734_SNP [dm6]	C	G	5.310e^-5	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_ttk mE1_TFBS_zfh1
3R	6723105	3R_6723105_SNP [dm3] 3R_10897383_SNP [dm6]	G	A	5.321e^-5	0.831	UPSTREAM CR45577 DOWNSTREAM Leash & 1 other INTERGENIC
3L	16870136	3L_16870136_SNP [dm3] 3L_16877036_SNP [dm6]	G	T	5.373e^-5	0.831	UPSTREAM CG32170 INTRON Lmpt	TF binding site mE1_TFBS_cad
2L	22135027	2L_22135027_SNP [dm3] 2L_22135027_SNP [dm6]	A	T	5.392e^-5	0.831	START_GAINED CG42748 UTR_5_PRIME CG42748 INTRON CG42748	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18366819	2L_18366819_SNP [dm3] 2L_18366819_SNP [dm6]	A	C	5.462e^-5	0.831	INTRON Fas3
X	17925814	X_17925814_SNP [dm3] X_18031781_SNP [dm6]	T	C	5.516e^-5	0.831	INTRON Sh
3R	6723118	3R_6723118_SNP [dm3] 3R_10897396_SNP [dm6]	A	C	5.543e^-5	0.831	UPSTREAM CR45577 DOWNSTREAM Leash & 1 other INTERGENIC
2L	2327620	2L_2327620_SNP [dm3] 2L_2327620_SNP [dm6]	A	G	5.617e^-5	0.831	INTRON CG9967 & 1 other
3R	6723042	3R_6723042_SNP [dm3] 3R_10897320_SNP [dm6]	T	G	5.656e^-5	0.831	UPSTREAM CR45577 DOWNSTREAM Leash & 1 other INTERGENIC
3R	6723062	3R_6723062_SNP [dm3] 3R_10897340_SNP [dm6]	A	T	5.656e^-5	0.831	UPSTREAM CR45577 DOWNSTREAM Leash & 1 other INTERGENIC
2L	5109859	2L_5109859_SNP [dm3] 2L_5109859_SNP [dm6]	A	G	5.710e^-5	0.831	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10286698	X_10286698_SNP [dm3] X_10392665_SNP [dm6]	A	C	5.723e^-5	0.831	INTRON flw
3L	16870128	3L_16870128_SNP [dm3] 3L_16877028_SNP [dm6]	T	C	5.727e^-5	0.831	UPSTREAM CG32170 INTRON Lmpt
3L	16870130	3L_16870130_SNP [dm3] 3L_16877030_SNP [dm6]	G	C	5.727e^-5	0.831	UPSTREAM CG32170 INTRON Lmpt
2R	18240614	2R_18240614_SNP [dm3] 2R_22353109_SNP [dm6]	C	T	5.792e^-5	0.831	INTRON Liprin-gamma
2R	19083661	2R_19083661_DEL [dm3] 2R_23196138_DEL [dm6]	TATATGTGCCT...	T	5.884e^-5	0.831	INTRON CG34371	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10367292	3L_10367292_SNP [dm3] 3L_10374192_SNP [dm6]	C	T	5.915e^-5	0.831	INTERGENIC
2L	5110774	2L_5110774_SNP [dm3] 2L_5110774_SNP [dm6]	C	T	5.975e^-5	0.831	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9294257	3L_9294257_DEL [dm3] 3L_9301157_DEL [dm6]	TT	A	6.001e^-5	0.831	INTERGENIC
3L	11102188	3L_11102188_SNP [dm3] 3L_11109088_SNP [dm6]	T	G	6.072e^-5	0.831	UPSTREAM CG7638 DOWNSTREAM CG12522 INTRON CG34012
3L	9919382	3L_9919382_SNP [dm3] 3L_9926282_SNP [dm6]	A	G	6.098e^-5	0.831	INTRON CG34356	TF binding site mE1_TFBS_HSA
2R	18843695	2R_18843695_INS [dm3] 2R_22956172_INS [dm6]	C	CC	6.200e^-5	0.831	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8352702	2R_8352702_SNP [dm3] 2R_12465197_SNP [dm6]	C	T	6.281e^-5	0.831	UTR_3_PRIME Lac DOWNSTREAM dgt5
2L	16244217	2L_16244217_SNP [dm3] 2L_16244217_SNP [dm6]	G	A	6.349e^-5	0.831	NON_SYNONYMOUS_CODING CG42818
3L	6089874	3L_6089874_SNP [dm3] 3L_6096774_SNP [dm6]	C	A	6.359e^-5	0.831	UPSTREAM Ets65A DOWNSTREAM loj INTERGENIC
3R	21593094	3R_21593094_SNP [dm3] 3R_25767372_SNP [dm6]	A	G	6.409e^-5	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	4081788	3R_4081788_SNP [dm3] 3R_8256066_SNP [dm6]	C	A	6.446e^-5	0.831	INTRON mtg
3R	23280862	3R_23280862_SNP [dm3] 3R_27455140_SNP [dm6]	G	C	6.499e^-5	0.831	INTERGENIC
3R	4078724	3R_4078724_SNP [dm3] 3R_8253002_SNP [dm6]	G	A	6.554e^-5	0.831	INTRON mtg	TF binding site mE1_TFBS_cnc
X	14572171	X_14572171_SNP [dm3] X_14678138_SNP [dm6]	A	T	6.556e^-5	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6696352	3R_6696352_SNP [dm3] 3R_10870630_SNP [dm6]	G	C	6.595e^-5	0.831	DOWNSTREAM Fdh & 1 other INTERGENIC
3L	20085812	3L_20085812_SNP [dm3] 3L_20092712_SNP [dm6]	G	A	6.604e^-5	0.831	INTERGENIC
3R	9286448	3R_9286448_SNP [dm3] 3R_13460726_SNP [dm6]	C	T	6.619e^-5	0.831	INTRON CR17025 & 1 other
3L	18280892	3L_18280892_SNP [dm3] 3L_18287792_SNP [dm6]	C	A	6.723e^-5	0.831	INTERGENIC
3L	872317	3L_872317_SNP [dm3] 3L_872317_SNP [dm6]	C	T	6.773e^-5	0.831	UPSTREAM CG32479 DOWNSTREAM CG12502 INTRON CG32479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	15990390	2L_15990390_SNP [dm3] 2L_15990390_SNP [dm6]	T	G	6.989e^-5	0.831	DOWNSTREAM CR43412 INTERGENIC
3R	4067101	3R_4067101_SNP [dm3] 3R_8241379_SNP [dm6]	C	G	6.992e^-5	0.831	UTR_3_PRIME CG9636 UPSTREAM Ada2b
3R	11218797	3R_11218797_DEL [dm3] 3R_15393075_DEL [dm6]	ATA	A	7.099e^-5	0.831	INTRON Rbp
3R	4057534	3R_4057534_SNP [dm3] 3R_8231812_SNP [dm6]	A	T	7.245e^-5	0.831	EXON CR45551
2R	19572058	2R_19572058_SNP [dm3] 2R_23684535_SNP [dm6]	C	T	7.281e^-5	0.831	UTR_3_PRIME St3 DOWNSTREAM l_2_efl INTRON St3	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	26235060	3R_26235060_SNP [dm3] 3R_30409338_SNP [dm6]	T	A	7.330e^-5	0.831	INTERGENIC
X	6295277	X_6295277_SNP [dm3] X_6401244_SNP [dm6]	T	C	7.332e^-5	0.831	INTERGENIC
3R	5562668	3R_5562668_SNP [dm3] 3R_9736946_SNP [dm6]	C	T	7.358e^-5	0.831	INTRON CG12950
3R	6723422	3R_6723422_SNP [dm3] 3R_10897700_SNP [dm6]	G	C	7.395e^-5	0.831	UPSTREAM CR45577 DOWNSTREAM CR45578 INTERGENIC
3R	4084300	3R_4084300_SNP [dm3] 3R_8258578_SNP [dm6]	T	C	7.463e^-5	0.831	SPLICE_SITE_REGION mtg INTRON mtg	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	27026843	3R_27026843_SNP [dm3] 3R_31201121_SNP [dm6]	C	T	7.542e^-5	0.831	SYNONYMOUS_CODING CG1544	TF binding site mE1_TFBS_cad
3L	18165094	3L_18165094_SNP [dm3] 3L_18171994_SNP [dm6]	C	A	7.733e^-5	0.831	INTRON W
3L	3278268	3L_3278268_SNP [dm3] 3L_3278268_SNP [dm6]	C	T	7.876e^-5	0.831	INTERGENIC
X	2868093	X_2868093_SNP [dm3] X_2974060_SNP [dm6]	G	A	7.972e^-5	0.831	UPSTREAM rst INTRON kirre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10082859	3L_10082859_SNP [dm3] 3L_10089759_SNP [dm6]	T	C	8.003e^-5	0.831	UPSTREAM CG14160 DOWNSTREAM CG32053 INTRON dpr6
3R	19027421	3R_19027421_SNP [dm3] 3R_23201699_SNP [dm6]	A	T	8.053e^-5	0.831	UTR_3_PRIME fzo UPSTREAM cnc INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2L	118851	2L_118851_SNP [dm3] 2L_118851_SNP [dm6]	G	A	8.200e^-5	0.831	NON_SYNONYMOUS_CODING CG4822 UTR_3_PRIME CG4822 INTRON CG11455	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18789351	3L_18789351_INS [dm3] 3L_18796251_INS [dm6]	C	CGCC	8.258e^-5	0.831	INTRON ftz-f1
2R	1092365	2R_1092365_SNP [dm3] 2R_5204860_SNP [dm6]	G	T	8.329e^-5	0.831	INTRON Nipped-A
3R	6726015	3R_6726015_DEL [dm3] 3R_10900293_DEL [dm6]	AA	A	8.398e^-5	0.831	INTERGENIC
X	8216845	X_8216845_SNP [dm3] X_8322812_SNP [dm6]	G	A	8.403e^-5	0.831	INTRON nAChRalpha3
2L	3784638	2L_3784638_SNP [dm3] 2L_3784638_SNP [dm6]	T	C	8.403e^-5	0.831	UPSTREAM CG31960 DOWNSTREAM bowl INTERGENIC
2L	18477678	2L_18477678_SNP [dm3] 2L_18477678_SNP [dm6]	T	G	8.436e^-5	0.831	INTRON CG10283
3R	14742191	3R_14742191_DEL [dm3] 3R_18916469_DEL [dm6]	ATGTA	A	8.630e^-5	0.831	INTRON Xrp1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc
3R	14742213	3R_14742213_SNP [dm3] 3R_18916491_SNP [dm6]	T	C	8.630e^-5	0.831	INTRON Xrp1	TF binding site mE1_TFBS_cnc
X	15489031	X_15489031_SNP [dm3] X_15594998_SNP [dm6]	T	G	8.728e^-5	0.831	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	19116650	2R_19116650_SNP [dm3] 2R_23229127_SNP [dm6]	A	T	8.744e^-5	0.831	INTERGENIC
3L	5272604	3L_5272604_SNP [dm3] 3L_5279504_SNP [dm6]	A	G	8.821e^-5	0.831	INTERGENIC
2R	1123094	2R_1123094_SNP [dm3] 2R_5235589_SNP [dm6]	G	A	8.835e^-5	0.831	INTRON Nipped-A	transposable element FlyBase
2R	1123101	2R_1123101_SNP [dm3] 2R_5235596_SNP [dm6]	A	T	8.835e^-5	0.831	INTRON Nipped-A	transposable element FlyBase
X	6825854	X_6825854_SNP [dm3] X_6931821_SNP [dm6]	G	T	8.867e^-5	0.831	INTRON CG14431
X	6825855	X_6825855_SNP [dm3] X_6931822_SNP [dm6]	G	A	8.867e^-5	0.831	INTRON CG14431
X	6825863	X_6825863_SNP [dm3] X_6931830_SNP [dm6]	T	C	8.867e^-5	0.831	INTRON CG14431
3L	15205384	3L_15205384_SNP [dm3] 3L_15212284_SNP [dm6]	T	A	8.912e^-5	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	27022969	3R_27022969_SNP [dm3] 3R_31197247_SNP [dm6]	G	A	9.054e^-5	0.831	INTRON CG1544	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	19515388	3L_19515388_SNP [dm3] 3L_19522288_SNP [dm6]	C	T	9.079e^-5	0.831	INTRON Cpr76Bc
3R	21272857	3R_21272857_SNP [dm3] 3R_25447135_SNP [dm6]	A	T	9.118e^-5	0.831	INTRON Fur1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
2L	17119572	2L_17119572_SNP [dm3] 2L_17119572_SNP [dm6]	G	A	9.133e^-5	0.831	INTERGENIC
X	8833139	X_8833139_DEL [dm3] X_8939106_DEL [dm6]	CC	C	9.181e^-5	0.831	INTRON rdgA	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	6723117	3R_6723117_SNP [dm3] 3R_10897395_SNP [dm6]	C	A	9.244e^-5	0.831	UPSTREAM CR45577 DOWNSTREAM Leash & 1 other INTERGENIC
3R	27147042	3R_27147042_SNP [dm3] 3R_31321320_SNP [dm6]	A	G	9.281e^-5	0.831	INTRON CG34347
3L	11846330	3L_11846330_SNP [dm3] 3L_11853230_SNP [dm6]	G	C	9.373e^-5	0.831	INTRON CG44837
3L	20456118	3L_20456118_DEL [dm3] 3L_20463018_DEL [dm6]	AAAA	A	9.399e^-5	0.831	DOWNSTREAM mag INTRON CG5195
3L	18165087	3L_18165087_SNP [dm3] 3L_18171987_SNP [dm6]	G	A	9.467e^-5	0.831	INTRON W
3L	11335964	3L_11335964_SNP [dm3] 3L_11342864_SNP [dm6]	A	G	9.504e^-5	0.831	DOWNSTREAM CR45250 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2R	14956750	2R_14956750_DEL [dm3] 2R_19069245_DEL [dm6]	TATGTAGGCAGT...	C	9.517e^-5	0.831	INTRON 5-HT1A
3L	11410610	3L_11410610_SNP [dm3] 3L_11417510_SNP [dm6]	T	C	9.543e^-5	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	13906946	2R_13906946_SNP [dm3] 2R_18019441_SNP [dm6]	C	T	9.590e^-5	0.831	SPLICE_SITE_REGION CG5084 SYNONYMOUS_CODING CG5084 UPSTREAM CG10910	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26037143	3R_26037143_SNP [dm3] 3R_30211421_SNP [dm6]	C	A	9.594e^-5	0.831	UPSTREAM Cec-Psi1 & 1 other DOWNSTREAM CecA1 INTERGENIC
3L	14979766	3L_14979766_SNP [dm3] 3L_14986666_SNP [dm6]	T	A	9.612e^-5	0.831	UPSTREAM mnd INTRON mnd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	18206575	3L_18206575_SNP [dm3] 3L_18213475_SNP [dm6]	G	A	9.634e^-5	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	15384707	3L_15384707_SNP [dm3] 3L_15391607_SNP [dm6]	A	T	9.655e^-5	0.831	INTERGENIC
3L	11184760	3L_11184760_SNP [dm3] 3L_11191660_SNP [dm6]	G	A	9.657e^-5	0.831	INTRON GlcAT-P
2R	16182155	2R_16182155_SNP [dm3] 2R_20294650_SNP [dm6]	G	A	9.696e^-5	0.831	EXON CR44639
3R	8560928	3R_8560928_SNP [dm3] 3R_12735206_SNP [dm6]	A	C	9.822e^-5	0.831	INTERGENIC
X	12191420	X_12191420_SNP [dm3] X_12297387_SNP [dm6]	C	A	9.850e^-5	0.831	INTRON Ten-a
3R	21587613	3R_21587613_SNP [dm3] 3R_25761891_SNP [dm6]	G	A	9.890e^-5	0.831	UTR_5_PRIME LpR1 UPSTREAM LpR1
2L	12268935	2L_12268935_SNP [dm3] 2L_12268935_SNP [dm6]	A	T	9.898e^-5	0.831	INTRON aret
3R	27148948	3R_27148948_SNP [dm3] 3R_31323226_SNP [dm6]	A	T	9.931e^-5	0.831	INTRON CG34347
3R	25875785	3R_25875785_SNP [dm3] 3R_30050063_SNP [dm6]	C	T	9.978e^-5	0.831	INTRON CG15528 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1250814	3L_1250814_SNP [dm3] 3L_1250814_SNP [dm6]	T	A	1.001e^-4	0.831	UTR_5_PRIME CG9129 DOWNSTREAM Sac1	TF binding site mE1_TFBS_cad
X	9642410	X_9642410_SNP [dm3] X_9748377_SNP [dm6]	G	A	1.003e^-4	0.831	INTRON Sp1
2R	8778834	2R_8778834_DEL [dm3] 2R_12891329_DEL [dm6]	TAATGAT	T	1.003e^-4	0.831	INTRON vg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	11218780	3R_11218780_SNP [dm3] 3R_15393058_SNP [dm6]	A	T	1.006e^-4	0.831	INTRON Rbp
3R	26592875	3R_26592875_INS [dm3] 3R_30767153_INS [dm6]	G	GCT	1.008e^-4	0.831	INTRON zfh1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	13836095	X_13836095_SNP [dm3] X_13942062_SNP [dm6]	A	G	1.012e^-4	0.831	INTRON mamo
X	16054356	X_16054356_DEL [dm3] X_16160323_DEL [dm6]	AGCAAA	A	1.017e^-4	0.831	INTERGENIC
X	12191424	X_12191424_INS [dm3] X_12297391_INS [dm6]	A	AGTT	1.022e^-4	0.831	INTRON Ten-a
2L	2002452	2L_2002452_SNP [dm3] 2L_2002452_SNP [dm6]	C	T	1.051e^-4	0.831	INTRON CG33543 & 1 other
2R	8778868	2R_8778868_SNP [dm3] 2R_12891363_SNP [dm6]	A	G	1.056e^-4	0.831	INTRON vg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16954635	3L_16954635_SNP [dm3] 3L_16961535_SNP [dm6]	T	C	1.059e^-4	0.831	SYNONYMOUS_CODING Nc73EF INTRON Nc73EF
3L	6543979	3L_6543979_SNP [dm3] 3L_6550879_SNP [dm6]	G	C	1.062e^-4	0.831	UTR_5_PRIME CG18769 DOWNSTREAM sfl INTRON CG18769	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	1266634	3L_1266634_SNP [dm3] 3L_1266634_SNP [dm6]	A	C	1.064e^-4	0.831	INTRON CG9134
X	3345431	X_3345431_SNP [dm3] X_3451398_SNP [dm6]	G	A	1.065e^-4	0.831	INTRON CR44999	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	11218790	3R_11218790_SNP [dm3] 3R_15393068_SNP [dm6]	A	T	1.066e^-4	0.831	INTRON Rbp
3L	14246565	3L_14246565_SNP [dm3] 3L_14253465_SNP [dm6]	A	C	1.069e^-4	0.831	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	20878009	X_20878009_SNP [dm3] X_21006982_SNP [dm6]	A	G	1.075e^-4	0.831	INTERGENIC
2L	15982168	2L_15982168_SNP [dm3] 2L_15982168_SNP [dm6]	A	G	1.076e^-4	0.831	DOWNSTREAM CG10839 INTERGENIC
3L	10370213	3L_10370213_SNP [dm3] 3L_10377113_SNP [dm6]	T	C	1.083e^-4	0.831	INTERGENIC
3L	17117172	3L_17117172_DEL [dm3] 3L_17124072_DEL [dm6]	CGGATGGAT	C	1.085e^-4	0.831	INTRON Rbp6	TF binding site BDTNP1_TFBS_da
2R	19116651	2R_19116651_SNP [dm3] 2R_23229128_SNP [dm6]	A	G	1.085e^-4	0.831	INTERGENIC
2R	19095946	2R_19095946_SNP [dm3] 2R_23208423_SNP [dm6]	A	G	1.100e^-4	0.831	INTERGENIC	TF binding site mE1_TFBS_sbb mE1_TFBS_sens
2R	19096026	2R_19096026_SNP [dm3] 2R_23208503_SNP [dm6]	C	T	1.100e^-4	0.831	INTERGENIC	TF binding site mE1_TFBS_sbb mE1_TFBS_sens
2L	18476804	2L_18476804_SNP [dm3] 2L_18476804_SNP [dm6]	C	A	1.105e^-4	0.831	SYNONYMOUS_CODING CG10283	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	2868127	X_2868127_INS [dm3] X_2974094_INS [dm6]	A	AACTGCTTA	1.107e^-4	0.831	UPSTREAM rst INTRON kirre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14572372	X_14572372_SNP [dm3] X_14678339_SNP [dm6]	C	A	1.110e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15163979	2L_15163979_SNP [dm3] 2L_15163979_SNP [dm6]	A	C	1.112e^-4	0.831	INTRON CG4168
2L	10371546	2L_10371546_SNP [dm3] 2L_10371546_SNP [dm6]	A	G	1.115e^-4	0.831	SYNONYMOUS_CODING rho-5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16182161	2R_16182161_SNP [dm3] 2R_20294656_SNP [dm6]	C	T	1.116e^-4	0.831	EXON CR44639
2R	1113654	2R_1113654_SNP [dm3] 2R_5226149_SNP [dm6]	G	A	1.120e^-4	0.831	INTRON Nipped-A
X	12189296	X_12189296_SNP [dm3] X_12295263_SNP [dm6]	T	A	1.123e^-4	0.831	SYNONYMOUS_CODING Ten-a
X	6902406	X_6902406_SNP [dm3] X_7008373_SNP [dm6]	T	A	1.135e^-4	0.831	DOWNSTREAM cm INTRON Inx7	TF binding site BDTNP1_TFBS_dl
2L	9174997	2L_9174997_SNP [dm3] 2L_9174997_SNP [dm6]	A	C	1.136e^-4	0.831	INTRON tai
2L	18761378	2L_18761378_SNP [dm3] 2L_18761378_SNP [dm6]	C	T	1.137e^-4	0.831	INTERGENIC
2L	5109707	2L_5109707_SNP [dm3] 2L_5109707_SNP [dm6]	C	T	1.140e^-4	0.831	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	23848482	3L_23848482_SNP [dm3] 3L_23855382_SNP [dm6]	G	T	1.141e^-4	0.831	INTRON CG40470
2L	5551234	2L_5551234_SNP [dm3] 2L_5551234_SNP [dm6]	C	T	1.142e^-4	0.831	UPSTREAM CG14014 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27139657	3R_27139657_SNP [dm3] 3R_31313935_SNP [dm6]	G	A	1.143e^-4	0.831	INTRON CG34347	TF binding site mE1_TFBS_inv
3R	23297069	3R_23297069_SNP [dm3] 3R_27471347_SNP [dm6]	T	C	1.145e^-4	0.831	INTERGENIC
3R	9589460	3R_9589460_SNP [dm3] 3R_13763738_SNP [dm6]	C	G	1.147e^-4	0.831	UTR_3_PRIME CG34383	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	3559948	3L_3559948_SNP [dm3] 3L_3559948_SNP [dm6]	A	G	1.152e^-4	0.831	INTRON Eip63E	TF binding site mE1_TFBS_bab1
2L	11798684	2L_11798684_SNP [dm3] 2L_11798684_SNP [dm6]	G	A	1.185e^-4	0.831	SYNONYMOUS_CODING crol UPSTREAM snoRNA:Me18S-A934	TF binding site mE1_TFBS_cad
3R	19048737	3R_19048737_SNP [dm3] 3R_23223015_SNP [dm6]	A	C	1.185e^-4	0.831	NON_SYNONYMOUS_CODING cnc
3R	6723557	3R_6723557_SNP [dm3] 3R_10897835_SNP [dm6]	C	G	1.186e^-4	0.831	UPSTREAM CR45577 DOWNSTREAM CR45578 INTERGENIC
3L	11102904	3L_11102904_SNP [dm3] 3L_11109804_SNP [dm6]	C	G	1.187e^-4	0.831	UTR_5_PRIME CG7638 UPSTREAM CG34012	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9682412	2L_9682412_SNP [dm3] 2L_9682412_SNP [dm6]	A	C	1.190e^-4	0.831	UTR_3_PRIME Pka-C1 DOWNSTREAM Pka-C1
X	3345448	X_3345448_SNP [dm3] X_3451415_SNP [dm6]	A	C	1.192e^-4	0.831	INTRON CR44999	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	19116653	2R_19116653_SNP [dm3] 2R_23229130_SNP [dm6]	G	A	1.194e^-4	0.831	INTERGENIC
2R	6630307	2R_6630307_SNP [dm3] 2R_10742802_SNP [dm6]	G	A	1.202e^-4	0.831	INTRON CG33144
X	13836088	X_13836088_SNP [dm3] X_13942055_SNP [dm6]	T	C	1.204e^-4	0.831	INTRON mamo
3R	6762864	3R_6762864_SNP [dm3] 3R_10937142_SNP [dm6]	G	A	1.204e^-4	0.831	INTERGENIC
3R	27132378	3R_27132378_SNP [dm3] 3R_31306656_SNP [dm6]	C	T	1.208e^-4	0.831	INTERGENIC	TF binding site mE1_TFBS_cad
3R	19027494	3R_19027494_SNP [dm3] 3R_23201772_SNP [dm6]	A	G	1.211e^-4	0.831	UTR_3_PRIME fzo INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	4067636	3R_4067636_SNP [dm3] 3R_8241914_SNP [dm6]	G	A	1.216e^-4	0.831	UTR_3_PRIME CG9636
3R	4087290	3R_4087290_SNP [dm3] 3R_8261568_SNP [dm6]	A	G	1.216e^-4	0.831	DOWNSTREAM mtg & 1 other INTRON CR18228 EXON CR18228
3L	18067950	3L_18067950_SNP [dm3] 3L_18074850_SNP [dm6]	G	A	1.225e^-4	0.831	UPSTREAM CG44004 EXON CR45391
3L	16635480	3L_16635480_SNP [dm3] 3L_16642380_SNP [dm6]	C	A	1.226e^-4	0.831	INTRON Abl
3L	9363851	3L_9363851_SNP [dm3] 3L_9370751_SNP [dm6]	C	T	1.231e^-4	0.831	DOWNSTREAM CG4452 & 1 other INTRON Fdxh
2R	14192441	2R_14192441_SNP [dm3] 2R_18304936_SNP [dm6]	C	A	1.233e^-4	0.831	UPSTREAM CG14505 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	5456827	X_5456827_SNP [dm3] X_5562794_SNP [dm6]	C	G	1.233e^-4	0.831	INTERGENIC	TF binding site mE1_TFBS_inv
2L	12152563	2L_12152563_SNP [dm3] 2L_12152563_SNP [dm6]	G	A	1.242e^-4	0.831	INTRON CG31760
2R	8778863	2R_8778863_SNP [dm3] 2R_12891358_SNP [dm6]	G	T	1.260e^-4	0.831	INTRON vg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	6295230	X_6295230_SNP [dm3] X_6401197_SNP [dm6]	G	A	1.263e^-4	0.831	INTERGENIC
3L	11426183	3L_11426183_SNP [dm3] 3L_11433083_SNP [dm6]	C	A	1.267e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	10389908	3L_10389908_DEL [dm3] 3L_10396808_DEL [dm6]	CA	C	1.269e^-4	0.831	INTERGENIC
3L	14838558	3L_14838558_SNP [dm3] 3L_14845458_SNP [dm6]	C	T	1.271e^-4	0.831	INTRON CG17839
X	10272520	X_10272520_SNP [dm3] X_10378487_SNP [dm6]	T	C	1.273e^-4	0.831	NON_SYNONYMOUS_CODING CG32681 INTRON CG17841
2R	4672474	2R_4672474_SNP [dm3] 2R_8784969_SNP [dm6]	T	C	1.275e^-4	0.831	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	8060620	2L_8060620_SNP [dm3] 2L_8060620_SNP [dm6]	G	A	1.286e^-4	0.831	SYNONYMOUS_CODING poe
2R	4920105	2R_4920105_SNP [dm3] 2R_9032600_SNP [dm6]	A	G	1.294e^-4	0.831	INTERGENIC
2L	12443925	2L_12443925_SNP [dm3] 2L_12443925_SNP [dm6]	T	G	1.303e^-4	0.831	SYNONYMOUS_CODING Oatp33Ea	TF binding site BDTNP1_TFBS_da
3R	23641030	3R_23641030_SNP [dm3] 3R_27815308_SNP [dm6]	C	T	1.304e^-4	0.831	INTRON CG34353
3L	5517412	3L_5517412_SNP [dm3] 3L_5524312_SNP [dm6]	C	A	1.304e^-4	0.831	INTRON Lkr
X	20537097	X_20537097_SNP [dm3] X_20666070_SNP [dm6]	A	G	1.305e^-4	0.831	INTRON CG1835	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	11410545	3L_11410545_INS [dm3] 3L_11417445_INS [dm6]	T	TAGATCATT	1.311e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	11410557	3L_11410557_SNP [dm3] 3L_11417457_SNP [dm6]	G	A	1.311e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11410586	3L_11410586_SNP [dm3] 3L_11417486_SNP [dm6]	C	T	1.311e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11410618	3L_11410618_SNP [dm3] 3L_11417518_SNP [dm6]	T	A	1.311e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	7986842	X_7986842_DEL [dm3] X_8092809_DEL [dm6]	GAGTGGG	G	1.328e^-4	0.831	UPSTREAM Ubc-E2H INTRON Ubc-E2H	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	15200510	2L_15200510_SNP [dm3] 2L_15200510_SNP [dm6]	C	T	1.335e^-4	0.831	UPSTREAM CG4168 INTERGENIC
2R	8779652	2R_8779652_SNP [dm3] 2R_12892147_SNP [dm6]	G	A	1.340e^-4	0.831	INTRON vg	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3R	9948704	3R_9948704_SNP [dm3] 3R_14122982_SNP [dm6]	T	C	1.346e^-4	0.831	SYNONYMOUS_CODING twf UPSTREAM Abi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	13019427	3R_13019427_SNP [dm3] 3R_17193705_SNP [dm6]	T	C	1.347e^-4	0.831	INTRON Mur89F
3R	13019480	3R_13019480_SNP [dm3] 3R_17193758_SNP [dm6]	G	A	1.347e^-4	0.831	INTRON Mur89F
X	14331722	X_14331722_SNP [dm3] X_14437689_SNP [dm6]	T	G	1.347e^-4	0.831	INTRON dpr8
2R	9189666	2R_9189666_SNP [dm3] 2R_13302161_SNP [dm6]	C	G	1.349e^-4	0.831	DOWNSTREAM CG17047 INTERGENIC
2R	14795756	2R_14795756_INS [dm3] 2R_18908251_INS [dm6]	C	CGGTTTAAAAGTGATCAC...	1.350e^-4	0.831	DOWNSTREAM Vha100-3 INTRON sano
2L	10055353	2L_10055353_SNP [dm3] 2L_10055353_SNP [dm6]	G	C	1.352e^-4	0.831	SYNONYMOUS_CODING Cpr31A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10620598	X_10620598_SNP [dm3] X_10726565_SNP [dm6]	A	G	1.360e^-4	0.831	INTRON CG32676	TF binding site mE1_TFBS_disco
2L	6569621	2L_6569621_SNP [dm3] 2L_6569621_SNP [dm6]	A	G	1.362e^-4	0.831	UTR_3_PRIME CG11319 INTRON CG11319	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8778862	2R_8778862_SNP [dm3] 2R_12891357_SNP [dm6]	T	C	1.367e^-4	0.831	INTRON vg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14524144	3R_14524144_SNP [dm3] 3R_18698422_SNP [dm6]	G	A	1.373e^-4	0.831	INTERGENIC
3L	5274111	3L_5274111_SNP [dm3] 3L_5281011_SNP [dm6]	A	G	1.376e^-4	0.831	INTERGENIC
3L	3278139	3L_3278139_SNP [dm3] 3L_3278139_SNP [dm6]	G	A	1.387e^-4	0.831	INTERGENIC
3L	874533	3L_874533_SNP [dm3] 3L_874533_SNP [dm6]	C	T	1.389e^-4	0.831	SYNONYMOUS_CODING CG32479	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2914967	3L_2914967_SNP [dm3] 3L_2914967_SNP [dm6]	G	A	1.395e^-4	0.831	DOWNSTREAM CG9970 INTRON Shab
3L	23873329	3L_23873329_SNP [dm3] 3L_23880229_SNP [dm6]	C	T	1.396e^-4	0.831	INTRON CG40470
3L	18817845	3L_18817845_SNP [dm3] 3L_18824745_SNP [dm6]	C	A	1.397e^-4	0.831	INTRON Cat
3R	11265000	3R_11265000_SNP [dm3] 3R_15439278_SNP [dm6]	C	T	1.399e^-4	0.831	UPSTREAM Act88F INTERGENIC	regulatory region REDfly_CRMs
2R	8778842	2R_8778842_SNP [dm3] 2R_12891337_SNP [dm6]	A	C	1.409e^-4	0.831	INTRON vg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	18576908	3L_18576908_SNP [dm3] 3L_18583808_SNP [dm6]	A	C	1.421e^-4	0.831	EXON CR45435
X	7796177	X_7796177_SNP [dm3] X_7902144_SNP [dm6]	G	A	1.426e^-4	0.831	UPSTREAM snoRNA:Or-aca2 & 2 others INTRON bys	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	10629196	3R_10629196_SNP [dm3] 3R_14803474_SNP [dm6]	G	A	1.427e^-4	0.831	SYNONYMOUS_CODING CG14857 DOWNSTREAM btsz	TF binding site mE1_TFBS_cad
2R	19116600	2R_19116600_SNP [dm3] 2R_23229077_SNP [dm6]	A	G	1.432e^-4	0.831	INTERGENIC
3R	25518976	3R_25518976_SNP [dm3] 3R_29693254_SNP [dm6]	A	G	1.437e^-4	0.831	INTRON dmrt99B	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
X	5437241	X_5437241_SNP [dm3] X_5543208_SNP [dm6]	C	T	1.438e^-4	0.831	INTRON Vsx2
3R	5565213	3R_5565213_SNP [dm3] 3R_9739491_SNP [dm6]	T	C	1.440e^-4	0.831	UTR_5_PRIME CG12950	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
2L	2327615	2L_2327615_SNP [dm3] 2L_2327615_SNP [dm6]	A	G	1.443e^-4	0.831	INTRON CG9967 & 1 other
3R	9297014	3R_9297014_SNP [dm3] 3R_13471292_SNP [dm6]	A	T	1.444e^-4	0.831	INTERGENIC
2L	15990281	2L_15990281_SNP [dm3] 2L_15990281_SNP [dm6]	C	G	1.449e^-4	0.831	DOWNSTREAM CR43412 INTERGENIC
3R	27148572	3R_27148572_SNP [dm3] 3R_31322850_SNP [dm6]	C	A	1.456e^-4	0.831	INTRON CG34347
2L	1673841	2L_1673841_SNP [dm3] 2L_1673841_SNP [dm6]	C	T	1.469e^-4	0.831	INTRON chinmo
3L	14979896	3L_14979896_SNP [dm3] 3L_14986796_SNP [dm6]	C	T	1.476e^-4	0.831	UPSTREAM mnd INTRON mnd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	7300042	3L_7300042_SNP [dm3] 3L_7306942_SNP [dm6]	C	T	1.482e^-4	0.831	INTRON unc-13-4A
3L	6747247	3L_6747247_SNP [dm3] 3L_6754147_SNP [dm6]	T	C	1.485e^-4	0.831	UTR_3_PRIME CG10103 DOWNSTREAM CG10103 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	6152755	3L_6152755_SNP [dm3] 3L_6159655_SNP [dm6]	G	T	1.485e^-4	0.831	INTERGENIC
3L	6152756	3L_6152756_SNP [dm3] 3L_6159656_SNP [dm6]	G	C	1.485e^-4	0.831	INTERGENIC
3L	6152760	3L_6152760_DEL [dm3] 3L_6159660_DEL [dm6]	CGA	G	1.485e^-4	0.831	INTERGENIC
3L	6152764	3L_6152764_SNP [dm3] 3L_6159664_SNP [dm6]	G	C	1.485e^-4	0.831	INTERGENIC
3L	6157972	3L_6157972_SNP [dm3] 3L_6164872_SNP [dm6]	G	A	1.485e^-4	0.831	DOWNSTREAM CG10289 & 1 other INTERGENIC
3R	4131179	3R_4131179_SNP [dm3] 3R_8305457_SNP [dm6]	C	T	1.485e^-4	0.831	UPSTREAM Sgt1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3R	27134260	3R_27134260_SNP [dm3] 3R_31308538_SNP [dm6]	G	A	1.497e^-4	0.831	INTERGENIC
3L	11410607	3L_11410607_SNP [dm3] 3L_11417507_SNP [dm6]	T	G	1.501e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11410623	3L_11410623_SNP [dm3] 3L_11417523_SNP [dm6]	G	A	1.501e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	19767429	3R_19767429_SNP [dm3] 3R_23941707_SNP [dm6]	G	C	1.502e^-4	0.831	INTRON Gdh
3R	27029407	3R_27029407_SNP [dm3] 3R_31203685_SNP [dm6]	G	T	1.515e^-4	0.831	UTR_3_PRIME CG1544 DOWNSTREAM chp
3L	5757191	3L_5757191_SNP [dm3] 3L_5764091_SNP [dm6]	T	A	1.521e^-4	0.831	UPSTREAM snoRNA:684 & 1 other DOWNSTREAM snoRNA:Psi28S-1837b & 2 others INTRON CG10576	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	18323724	3R_18323724_SNP [dm3] 3R_22498002_SNP [dm6]	A	T	1.524e^-4	0.831	INTRON Octbeta1R
X	6902390	X_6902390_DEL [dm3] X_7008357_DEL [dm6]	CATCCCCCGCC...	C	1.528e^-4	0.831	DOWNSTREAM cm INTRON Inx7	TF binding site BDTNP1_TFBS_dl
3L	18206578	3L_18206578_SNP [dm3] 3L_18213478_SNP [dm6]	C	A	1.528e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	22127154	2L_22127154_SNP [dm3] 2L_22127154_SNP [dm6]	C	T	1.530e^-4	0.831	UTR_3_PRIME CycK DOWNSTREAM CG3651
3R	13019488	3R_13019488_SNP [dm3] 3R_17193766_SNP [dm6]	T	C	1.532e^-4	0.831	INTRON Mur89F
3R	26761306	3R_26761306_SNP [dm3] 3R_30935584_SNP [dm6]	A	T	1.538e^-4	0.831	UTR_3_PRIME CG15549
3L	3083529	3L_3083529_SNP [dm3] 3L_3083529_SNP [dm6]	A	G	1.545e^-4	0.831	INTRON CG11486	TF binding site mE1_TFBS_Trl
2L	13175872	2L_13175872_SNP [dm3] 2L_13175872_SNP [dm6]	A	G	1.549e^-4	0.831	UTR_5_PRIME Sfmbt UPSTREAM CG43925	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	880973	3L_880973_SNP [dm3] 3L_880973_SNP [dm6]	G	A	1.550e^-4	0.831	UTR_5_PRIME CG13907 INTRON CG32479	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
X	12138323	X_12138323_SNP [dm3] X_12244290_SNP [dm6]	C	G	1.552e^-4	0.831	INTRON Ten-a
3R	19905112	3R_19905112_DEL [dm3] 3R_24079390_DEL [dm6]	CC	T	1.557e^-4	0.831	INTRON 4EHP
3L	9364395	3L_9364395_DEL [dm3] 3L_9371295_DEL [dm6]	TC	T	1.563e^-4	0.831	UPSTREAM Fdxh DOWNSTREAM CG4452 & 1 other INTERGENIC
3L	19854369	3L_19854369_SNP [dm3] 3L_19861269_SNP [dm6]	A	T	1.565e^-4	0.831	UPSTREAM CR45433 DOWNSTREAM Papss INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19515367	3L_19515367_SNP [dm3] 3L_19522267_SNP [dm6]	C	A	1.566e^-4	0.831	INTRON Cpr76Bc
3L	7547101	3L_7547101_INS [dm3] 3L_7554001_INS [dm6]	C	CG	1.568e^-4	0.831	INTERGENIC
2L	16933486	2L_16933486_SNP [dm3] 2L_16933486_SNP [dm6]	T	C	1.570e^-4	0.831	INTERGENIC
3R	19652022	3R_19652022_SNP [dm3] 3R_23826300_SNP [dm6]	C	T	1.572e^-4	0.831	UPSTREAM snRNA:U1:95Cc & 1 other INTRON CG34355	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10797406	3L_10797406_SNP [dm3] 3L_10804306_SNP [dm6]	G	T	1.575e^-4	0.831	DOWNSTREAM CR44347 EXON CR44347
3L	6157963	3L_6157963_SNP [dm3] 3L_6164863_SNP [dm6]	A	T	1.588e^-4	0.831	DOWNSTREAM CG10289 & 1 other INTERGENIC
3R	6722870	3R_6722870_SNP [dm3] 3R_10897148_SNP [dm6]	G	A	1.609e^-4	0.831	DOWNSTREAM Leash & 1 other EXON CR45577	TF binding site BDTNP1_TFBS_sna
3L	12165381	3L_12165381_SNP [dm3] 3L_12172281_SNP [dm6]	G	A	1.620e^-4	0.831	INTRON Rh7
2L	7762885	2L_7762885_SNP [dm3] 2L_7762885_SNP [dm6]	A	G	1.620e^-4	0.831	INTRON CG7196
3L	17154300	3L_17154300_SNP [dm3] 3L_17161200_SNP [dm6]	A	G	1.621e^-4	0.831	INTRON Rbp6
3L	17154314	3L_17154314_SNP [dm3] 3L_17161214_SNP [dm6]	G	A	1.621e^-4	0.831	INTRON Rbp6
3R	19123498	3R_19123498_SNP [dm3] 3R_23297776_SNP [dm6]	C	T	1.638e^-4	0.831	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	19457318	2R_19457318_SNP [dm3] 2R_23569795_SNP [dm6]	T	A	1.639e^-4	0.831	INTRON apt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6152768	3L_6152768_SNP [dm3] 3L_6159668_SNP [dm6]	T	C	1.640e^-4	0.831	INTERGENIC
3R	8560916	3R_8560916_SNP [dm3] 3R_12735194_SNP [dm6]	G	A	1.651e^-4	0.831	INTERGENIC
3L	3514957	3L_3514957_SNP [dm3] 3L_3514957_SNP [dm6]	C	A	1.651e^-4	0.831	UPSTREAM Eip63E INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	10272533	X_10272533_SNP [dm3] X_10378500_SNP [dm6]	T	G	1.659e^-4	0.831	SYNONYMOUS_CODING CG32681 INTRON CG17841
3R	5566876	3R_5566876_INS [dm3] 3R_9741154_INS [dm6]	A	AACAA	1.675e^-4	0.831	INTRON Pnn	TF binding site mE1_TFBS_HSA
3L	16796804	3L_16796804_SNP [dm3] 3L_16803704_SNP [dm6]	A	G	1.681e^-4	0.831	INTRON CG9674	TF binding site mE1_TFBS_cad
2R	20353588	2R_20353588_INS [dm3] 2R_24466065_INS [dm6]	C	CTTGAAAGTTCCCCTTGACG...	1.690e^-4	0.831	INTRON CG13579
2R	19572049	2R_19572049_SNP [dm3] 2R_23684526_SNP [dm6]	G	A	1.697e^-4	0.831	UTR_3_PRIME St3 DOWNSTREAM l_2_efl INTRON St3	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	7999515	3L_7999515_SNP [dm3] 3L_8006415_SNP [dm6]	T	C	1.701e^-4	0.831	INTRON nmo
X	5456832	X_5456832_SNP [dm3] X_5562799_SNP [dm6]	C	G	1.703e^-4	0.831	INTERGENIC	TF binding site mE1_TFBS_inv
X	5456834	X_5456834_DEL [dm3] X_5562801_DEL [dm6]	AA	A	1.703e^-4	0.831	INTERGENIC	TF binding site mE1_TFBS_inv
3R	13373796	3R_13373796_SNP [dm3] 3R_17548074_SNP [dm6]	G	A	1.707e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13120396	2L_13120396_SNP [dm3] 2L_13120396_SNP [dm6]	A	T	1.709e^-4	0.831	UTR_3_PRIME CG43050
2L	5110646	2L_5110646_SNP [dm3] 2L_5110646_SNP [dm6]	A	T	1.714e^-4	0.831	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	27142834	3R_27142834_SNP [dm3] 3R_31317112_SNP [dm6]	C	T	1.726e^-4	0.831	INTRON CG34347
3L	11410569	3L_11410569_SNP [dm3] 3L_11417469_SNP [dm6]	T	C	1.730e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	6693872	3R_6693872_SNP [dm3] 3R_10868150_SNP [dm6]	T	C	1.731e^-4	0.831	UTR_5_PRIME SelR UPSTREAM Tsp86D INTRON SelR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	4076155	3R_4076155_SNP [dm3] 3R_8250433_SNP [dm6]	T	C	1.733e^-4	0.831	UPSTREAM mtg DOWNSTREAM CG15864 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3031714	3L_3031714_SNP [dm3] 3L_3031714_SNP [dm6]	C	T	1.735e^-4	0.831	INTERGENIC
3R	6703830	3R_6703830_SNP [dm3] 3R_10878108_SNP [dm6]	A	T	1.740e^-4	0.831	UTR_3_PRIME Sodh-2 UPSTREAM CR45195 DOWNSTREAM CG14695	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18206561	3L_18206561_SNP [dm3] 3L_18213461_SNP [dm6]	A	C	1.746e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	5231456	3L_5231456_SNP [dm3] 3L_5238356_SNP [dm6]	A	C	1.752e^-4	0.831	INTRON shep
3L	877232	3L_877232_SNP [dm3] 3L_877232_SNP [dm6]	C	A	1.753e^-4	0.831	DOWNSTREAM CG13907 INTRON CG32479
X	5544474	X_5544474_SNP [dm3] X_5650441_SNP [dm6]	G	A	1.764e^-4	0.831	DOWNSTREAM CG42265 INTERGENIC
2L	18470806	2L_18470806_SNP [dm3] 2L_18470806_SNP [dm6]	A	T	1.766e^-4	0.831	UPSTREAM mir-100 INTRON let-7-C
3L	13735799	3L_13735799_SNP [dm3] 3L_13742699_SNP [dm6]	G	A	1.769e^-4	0.831	INTRON bru-3
3L	11451490	3L_11451490_SNP [dm3] 3L_11458390_SNP [dm6]	T	A	1.777e^-4	0.831	UTR_5_PRIME CG12289 UPSTREAM CG7551	TF binding site BDTNP1_TFBS_sna
2R	13499682	2R_13499682_SNP [dm3] 2R_17612177_SNP [dm6]	C	A	1.777e^-4	0.831	INTRON CG10936
3L	873931	3L_873931_SNP [dm3] 3L_873931_SNP [dm6]	T	C	1.794e^-4	0.831	INTRON CG32479	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7290253	3L_7290253_SNP [dm3] 3L_7297153_SNP [dm6]	C	G	1.802e^-4	0.831	INTRON unc-13-4A
3R	13373829	3R_13373829_SNP [dm3] 3R_17548107_SNP [dm6]	T	A	1.806e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1369612	2L_1369612_SNP [dm3] 2L_1369612_SNP [dm6]	T	A	1.820e^-4	0.831	DOWNSTREAM CG14346 INTERGENIC
2L	15056928	2L_15056928_SNP [dm3] 2L_15056928_SNP [dm6]	T	C	1.830e^-4	0.831	INTRON ck	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
3L	10857850	3L_10857850_SNP [dm3] 3L_10864750_SNP [dm6]	C	T	1.831e^-4	0.831	INTRON tna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23159492	3R_23159492_SNP [dm3] 3R_27333770_SNP [dm6]	T	C	1.837e^-4	0.831	INTERGENIC
2L	16412249	2L_16412249_SNP [dm3] 2L_16412249_SNP [dm6]	C	T	1.842e^-4	0.831	INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	1123034	2R_1123034_SNP [dm3] 2R_5235529_SNP [dm6]	C	G	1.847e^-4	0.831	INTRON Nipped-A	transposable element FlyBase
3R	9311875	3R_9311875_SNP [dm3] 3R_13486153_SNP [dm6]	A	C	1.850e^-4	0.831	INTERGENIC
2R	15907580	2R_15907580_SNP [dm3] 2R_20020075_SNP [dm6]	G	A	1.851e^-4	0.831	INTERGENIC
3L	10780411	3L_10780411_SNP [dm3] 3L_10787311_SNP [dm6]	A	T	1.852e^-4	0.831	INTERGENIC
X	5013613	X_5013613_DEL [dm3] X_5119580_DEL [dm6]	CT	C	1.854e^-4	0.831	INTRON rg & 1 other
3L	8217661	3L_8217661_SNP [dm3] 3L_8224561_SNP [dm6]	A	G	1.858e^-4	0.831	INTERGENIC
3L	7702596	3L_7702596_SNP [dm3] 3L_7709496_SNP [dm6]	T	C	1.874e^-4	0.831	INTRON CG32373 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	873951	3L_873951_SNP [dm3] 3L_873951_SNP [dm6]	C	T	1.883e^-4	0.831	INTRON CG32479	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	7883963	3R_7883963_SNP [dm3] 3R_12058241_SNP [dm6]	G	A	1.895e^-4	0.831	INTERGENIC
2L	14119314	2L_14119314_SNP [dm3] 2L_14119314_SNP [dm6]	A	C	1.898e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	10284323	3R_10284323_SNP [dm3] 3R_14458601_SNP [dm6]	T	A	1.901e^-4	0.831	INTRON cv-c	TF binding site BDTNP1_TFBS_twi
3L	10370723	3L_10370723_SNP [dm3] 3L_10377623_SNP [dm6]	C	T	1.916e^-4	0.831	INTERGENIC
2L	15982093	2L_15982093_SNP [dm3] 2L_15982093_SNP [dm6]	T	A	1.916e^-4	0.831	DOWNSTREAM CG10839 INTERGENIC
2R	8779617	2R_8779617_SNP [dm3] 2R_12892112_SNP [dm6]	A	G	1.918e^-4	0.831	INTRON vg	TF binding site mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2R	19045212	2R_19045212_SNP [dm3] 2R_23157689_SNP [dm6]	T	A	1.919e^-4	0.831	UTR_3_PRIME CG13545 INTRON CG9899
2L	15056222	2L_15056222_SNP [dm3] 2L_15056222_SNP [dm6]	A	T	1.928e^-4	0.831	INTRON ck	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
3R	13513773	3R_13513773_SNP [dm3] 3R_17688051_SNP [dm6]	C	T	1.930e^-4	0.831	UTR_3_PRIME osa UPSTREAM CG31249
X	3379455	X_3379455_DEL [dm3] X_3485422_DEL [dm6]	TG	A	1.932e^-4	0.831	UPSTREAM CG10803 & 1 other DOWNSTREAM CG10802 INTRON CR44999	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2L	1621185	2L_1621185_SNP [dm3] 2L_1621185_SNP [dm6]	G	C	1.940e^-4	0.831	EXON CR44603	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11218844	3R_11218844_SNP [dm3] 3R_15393122_SNP [dm6]	C	T	1.943e^-4	0.831	INTRON Rbp
3R	4130068	3R_4130068_DEL [dm3] 3R_8304346_DEL [dm6]	AAG	A	1.951e^-4	0.831	UTR_3_PRIME Sgt1 UPSTREAM nac	TF binding site BDTNP1_TFBS_dl
3R	10914508	3R_10914508_SNP [dm3] 3R_15088786_SNP [dm6]	G	T	1.952e^-4	0.831	INTRON CG6966
3R	22057305	3R_22057305_SNP [dm3] 3R_26231583_SNP [dm6]	C	T	1.954e^-4	0.831	SYNONYMOUS_CODING CG12290	TF binding site mE1_TFBS_chinmo
2L	8949054	2L_8949054_SNP [dm3] 2L_8949054_SNP [dm6]	G	T	1.968e^-4	0.831	INTRON C1GalTA
3L	5900162	3L_5900162_SNP [dm3] 3L_5907062_SNP [dm6]	T	C	1.983e^-4	0.831	UPSTREAM CG13288 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
2R	19982901	2R_19982901_SNP [dm3] 2R_24095378_SNP [dm6]	T	C	1.984e^-4	0.831	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9526113	2R_9526113_SNP [dm3] 2R_13638608_SNP [dm6]	T	G	1.985e^-4	0.831	INTRON fas	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10971034	2L_10971034_SNP [dm3] 2L_10971034_SNP [dm6]	G	A	1.985e^-4	0.831	SYNONYMOUS_CODING YL-1 UPSTREAM CG33129	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	13824475	3R_13824475_SNP [dm3] 3R_17998753_SNP [dm6]	C	T	1.990e^-4	0.831	INTRON cpo
2L	5111049	2L_5111049_INS [dm3] 2L_5111049_INS [dm6]	A	AGGGA	2.002e^-4	0.831	INTRON Msp300	TF binding site mE1_TFBS_cad
2R	11189758	2R_11189758_SNP [dm3] 2R_15302253_SNP [dm6]	C	T	2.004e^-4	0.831	INTRON Trpm	TF binding site mE1_TFBS_inv
3R	27111488	3R_27111488_SNP [dm3] 3R_31285766_SNP [dm6]	T	A	2.015e^-4	0.831	INTERGENIC
X	15138122	X_15138122_SNP [dm3] X_15244089_SNP [dm6]	C	T	2.018e^-4	0.831	NON_SYNONYMOUS_CODING PPYR1	TF binding site mE1_TFBS_HSA
3R	8561205	3R_8561205_SNP [dm3] 3R_12735483_SNP [dm6]	A	T	2.019e^-4	0.831	INTERGENIC
3L	876192	3L_876192_SNP [dm3] 3L_876192_SNP [dm6]	A	G	2.025e^-4	0.831	INTRON CG32479
3R	18323849	3R_18323849_DEL [dm3] 3R_22498127_DEL [dm6]	CA	C	2.025e^-4	0.831	INTRON Octbeta1R
3L	3869442	3L_3869442_SNP [dm3] 3L_3869442_SNP [dm6]	G	A	2.027e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	20162190	2R_20162190_SNP [dm3] 2R_24274667_SNP [dm6]	G	A	2.028e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	6305370	3R_6305370_SNP [dm3] 3R_10479648_SNP [dm6]	G	A	2.029e^-4	0.831	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12256785	2R_12256785_SNP [dm3] 2R_16369280_SNP [dm6]	A	T	2.043e^-4	0.831	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	6769360	2L_6769360_SNP [dm3] 2L_6769360_SNP [dm6]	C	T	2.050e^-4	0.831	DOWNSTREAM CG11321 INTRON CG11321
X	11182394	X_11182394_SNP [dm3] X_11288361_SNP [dm6]	A	G	2.055e^-4	0.831	INTRON CG44422
3R	19151667	3R_19151667_SNP [dm3] 3R_23325945_SNP [dm6]	T	A	2.056e^-4	0.831	INTRON pnt	TF binding site mE1_TFBS_sens mE1_TFBS_Trl
3R	20842531	3R_20842531_SNP [dm3] 3R_25016809_SNP [dm6]	C	G	2.057e^-4	0.831	NON_SYNONYMOUS_CODING tnc
2L	3718834	2L_3718834_SNP [dm3] 2L_3718834_SNP [dm6]	T	G	2.062e^-4	0.831	INTRON Shaw
2L	116591	2L_116591_SNP [dm3] 2L_116591_SNP [dm6]	C	A	2.062e^-4	0.831	UPSTREAM CG13694 DOWNSTREAM CG4822 INTRON CG11455	transposable element FlyBase
3R	16795971	3R_16795971_SNP [dm3] 3R_20970249_SNP [dm6]	A	C	2.066e^-4	0.831	INTRON Atpalpha
X	18933468	X_18933468_SNP [dm3] X_19039435_SNP [dm6]	A	G	2.073e^-4	0.831	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	17504513	X_17504513_SNP [dm3] X_17610480_SNP [dm6]	A	G	2.076e^-4	0.831	INTERGENIC
2R	17706749	2R_17706749_SNP [dm3] 2R_21819244_SNP [dm6]	A	T	2.077e^-4	0.831	INTERGENIC
X	16837317	X_16837317_SNP [dm3] X_16943284_SNP [dm6]	C	T	2.086e^-4	0.831	UPSTREAM RhoGAP15B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	27139647	3R_27139647_SNP [dm3] 3R_31313925_SNP [dm6]	T	G	2.088e^-4	0.831	INTRON CG34347	TF binding site mE1_TFBS_inv
2R	16323313	2R_16323313_SNP [dm3] 2R_20435808_SNP [dm6]	A	G	2.088e^-4	0.831	INTRON CG12484
3R	21355950	3R_21355950_SNP [dm3] 3R_25530228_SNP [dm6]	C	A	2.098e^-4	0.831	INTRON msi
3R	19027436	3R_19027436_SNP [dm3] 3R_23201714_SNP [dm6]	A	T	2.116e^-4	0.831	UTR_3_PRIME fzo INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	21356030	3R_21356030_SNP [dm3] 3R_25530308_SNP [dm6]	A	G	2.125e^-4	0.831	INTRON msi
2R	13770110	2R_13770110_SNP [dm3] 2R_17882605_SNP [dm6]	A	C	2.125e^-4	0.831	UPSTREAM CG30110 INTRON Elk
2R	8779613	2R_8779613_INS [dm3] 2R_12892108_INS [dm6]	G	GCTTC	2.126e^-4	0.831	INTRON vg	TF binding site mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3L	11178278	3L_11178278_SNP [dm3] 3L_11185178_SNP [dm6]	C	T	2.132e^-4	0.831	INTRON GlcAT-P
3L	8458704	3L_8458704_SNP [dm3] 3L_8465604_SNP [dm6]	G	T	2.138e^-4	0.831	SYNONYMOUS_CODING Gug	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10090569	X_10090569_SNP [dm3] X_10196536_SNP [dm6]	G	A	2.138e^-4	0.831	INTRON CR44894	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10389960	3L_10389960_SNP [dm3] 3L_10396860_SNP [dm6]	C	A	2.141e^-4	0.831	INTERGENIC
3R	18989920	3R_18989920_SNP [dm3] 3R_23164198_SNP [dm6]	C	A	2.144e^-4	0.831	INTERGENIC
X	8834016	X_8834016_SNP [dm3] X_8939983_SNP [dm6]	G	A	2.148e^-4	0.831	INTRON rdgA
2L	13884022	2L_13884022_SNP [dm3] 2L_13884022_SNP [dm6]	A	C	2.154e^-4	0.831	INTRON CenG1A
2L	14305464	2L_14305464_SNP [dm3] 2L_14305464_SNP [dm6]	T	C	2.158e^-4	0.831	INTRON wb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	14561291	X_14561291_SNP [dm3] X_14667258_SNP [dm6]	A	T	2.158e^-4	0.831	INTERGENIC
3L	13461638	3L_13461638_SNP [dm3] 3L_13468538_SNP [dm6]	A	T	2.178e^-4	0.831	SYNONYMOUS_CODING CG10089
3L	22281672	3L_22281672_DEL [dm3] 3L_22288572_DEL [dm6]	TT	T	2.189e^-4	0.831	UPSTREAM Aats-ile & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14280599	3L_14280599_SNP [dm3] 3L_14287499_SNP [dm6]	T	C	2.193e^-4	0.831	INTRON fz
3R	9948773	3R_9948773_SNP [dm3] 3R_14123051_SNP [dm6]	A	G	2.193e^-4	0.831	SYNONYMOUS_CODING twf UPSTREAM Abi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	19027432	3R_19027432_SNP [dm3] 3R_23201710_SNP [dm6]	T	G	2.195e^-4	0.831	UTR_3_PRIME fzo INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2L	15163957	2L_15163957_DEL [dm3] 2L_15163957_DEL [dm6]	TAC	T	2.200e^-4	0.831	INTRON CG4168
3R	9759415	3R_9759415_SNP [dm3] 3R_13933693_SNP [dm6]	T	C	2.202e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	14709400	3R_14709400_SNP [dm3] 3R_18883678_SNP [dm6]	A	G	2.204e^-4	0.831	INTERGENIC
3L	16141024	3L_16141024_SNP [dm3] 3L_16147924_SNP [dm6]	G	C	2.204e^-4	0.831	INTRON CG5151
3R	12790801	3R_12790801_SNP [dm3] 3R_16965079_SNP [dm6]	C	T	2.206e^-4	0.831	INTRON Abd-B
2L	16244333	2L_16244333_SNP [dm3] 2L_16244333_SNP [dm6]	C	T	2.212e^-4	0.831	SYNONYMOUS_CODING CG42818
X	12195790	X_12195790_SNP [dm3] X_12301757_SNP [dm6]	A	G	2.216e^-4	0.831	INTRON Ten-a
X	16147911	X_16147911_INS [dm3] X_16253878_INS [dm6]	T	CA	2.218e^-4	0.831	UPSTREAM snRNA:U2:14B DOWNSTREAM snRNA:U5:14B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	22373967	3R_22373967_DEL [dm3] 3R_26548245_DEL [dm6]	CTGCTTTCATGC...	C	2.228e^-4	0.831	INTRON scrib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19027405	3R_19027405_SNP [dm3] 3R_23201683_SNP [dm6]	C	T	2.230e^-4	0.831	UTR_3_PRIME fzo UPSTREAM cnc INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2L	16676335	2L_16676335_SNP [dm3] 2L_16676335_SNP [dm6]	G	T	2.231e^-4	0.831	UPSTREAM her INTRON Trpgamma
3L	6083172	3L_6083172_SNP [dm3] 3L_6090072_SNP [dm6]	G	A	2.234e^-4	0.831	UTR_3_PRIME CG13293	TF binding site mE1_TFBS_cad
3L	18817936	3L_18817936_SNP [dm3] 3L_18824836_SNP [dm6]	A	G	2.238e^-4	0.831	INTRON Cat
2R	19116695	2R_19116695_SNP [dm3] 2R_23229172_SNP [dm6]	T	A	2.248e^-4	0.831	INTERGENIC
3R	6725820	3R_6725820_DEL [dm3] 3R_10900098_DEL [dm6]	GTAATG	G	2.254e^-4	0.831	INTERGENIC
3L	15591158	3L_15591158_SNP [dm3] 3L_15598058_SNP [dm6]	G	T	2.255e^-4	0.831	INTRON RhoGAP71E	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19691099	3R_19691099_SNP [dm3] 3R_23865377_SNP [dm6]	A	C	2.258e^-4	0.831	INTRON Pli	TF binding site BDTNP1_TFBS_twi
3L	17107941	3L_17107941_SNP [dm3] 3L_17114841_SNP [dm6]	C	T	2.261e^-4	0.831	INTRON Rbp6
3R	19905088	3R_19905088_SNP [dm3] 3R_24079366_SNP [dm6]	T	A	2.263e^-4	0.831	INTRON 4EHP
2R	17705459	2R_17705459_SNP [dm3] 2R_21817954_SNP [dm6]	C	T	2.265e^-4	0.831	INTERGENIC
3R	14196333	3R_14196333_SNP [dm3] 3R_18370611_SNP [dm6]	A	C	2.274e^-4	0.831	SYNONYMOUS_CODING gl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11181882	3L_11181882_SNP [dm3] 3L_11188782_SNP [dm6]	A	G	2.281e^-4	0.831	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	16244337	2L_16244337_SNP [dm3] 2L_16244337_SNP [dm6]	A	C	2.283e^-4	0.831	NON_SYNONYMOUS_CODING CG42818
2R	19929696	2R_19929696_SNP [dm3] 2R_24042173_SNP [dm6]	C	T	2.287e^-4	0.831	SYNONYMOUS_CODING IntS1	TF binding site mE1_TFBS_chinmo
3R	11218812	3R_11218812_SNP [dm3] 3R_15393090_SNP [dm6]	G	C	2.289e^-4	0.831	INTRON Rbp
2L	18367346	2L_18367346_INS [dm3] 2L_18367346_INS [dm6]	TT	GAG	2.289e^-4	0.831	INTRON Fas3
2R	14603228	2R_14603228_SNP [dm3] 2R_18715723_SNP [dm6]	C	T	2.294e^-4	0.831	INTERGENIC
2L	8945278	2L_8945278_SNP [dm3] 2L_8945278_SNP [dm6]	A	C	2.300e^-4	0.831	INTRON C1GalTA	TF binding site mE1_TFBS_cad
3L	3932263	3L_3932263_SNP [dm3] 3L_3932263_SNP [dm6]	T	G	2.301e^-4	0.831	INTRON Eip63F-1
3L	13607048	3L_13607048_SNP [dm3] 3L_13613948_SNP [dm6]	A	G	2.318e^-4	0.831	INTRON bru-3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14561434	X_14561434_SNP [dm3] X_14667401_SNP [dm6]	G	A	2.319e^-4	0.831	INTERGENIC
3R	5566512	3R_5566512_SNP [dm3] 3R_9740790_SNP [dm6]	G	A	2.329e^-4	0.831	UPSTREAM Pnn & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10092736	3L_10092736_SNP [dm3] 3L_10099636_SNP [dm6]	T	C	2.330e^-4	0.831	SYNONYMOUS_CODING CG42826 INTRON dpr6
3R	5725908	3R_5725908_SNP [dm3] 3R_9900186_SNP [dm6]	A	G	2.331e^-4	0.831	INTRON Glut4EF
3R	17612321	3R_17612321_SNP [dm3] 3R_21786599_SNP [dm6]	G	A	2.333e^-4	0.831	SYNONYMOUS_CODING CASK UTR_3_PRIME CASK UPSTREAM CRG
2L	2264632	2L_2264632_SNP [dm3] 2L_2264632_SNP [dm6]	G	T	2.341e^-4	0.831	SYNONYMOUS_CODING CG34049 DOWNSTREAM CG4270
2L	10050660	2L_10050660_SNP [dm3] 2L_10050660_SNP [dm6]	A	T	2.350e^-4	0.831	UPSTREAM CR44874 INTRON CG33301	TF binding site mE1_TFBS_cad
2R	15827352	2R_15827352_SNP [dm3] 2R_19939847_SNP [dm6]	A	T	2.350e^-4	0.831	DOWNSTREAM CR43421 INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	16832052	2R_16832052_SNP [dm3] 2R_20944547_SNP [dm6]	C	G	2.350e^-4	0.831	INTRON Act57B	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	8665824	2L_8665824_INS [dm3] 2L_8665824_INS [dm6]	T	TAT	2.369e^-4	0.831	INTRON Sema-1a	TF binding site mE1_TFBS_cad
3L	18789412	3L_18789412_SNP [dm3] 3L_18796312_SNP [dm6]	T	A	2.371e^-4	0.831	INTRON ftz-f1
3L	7999731	3L_7999731_SNP [dm3] 3L_8006631_SNP [dm6]	T	A	2.375e^-4	0.831	INTRON nmo
3R	25879941	3R_25879941_SNP [dm3] 3R_30054219_SNP [dm6]	C	A	2.375e^-4	0.831	NON_SYNONYMOUS_CODING CG7946 DOWNSTREAM spn-A	TF binding site mE1_TFBS_sens
3L	12606431	3L_12606431_SNP [dm3] 3L_12613331_SNP [dm6]	T	C	2.381e^-4	0.831	INTRON caup	silencer mE1_HDAC_PRE
3R	12790565	3R_12790565_SNP [dm3] 3R_16964843_SNP [dm6]	G	T	2.382e^-4	0.831	UPSTREAM Abd-B INTRON Abd-B
3L	16994062	3L_16994062_SNP [dm3] 3L_17000962_SNP [dm6]	C	T	2.390e^-4	0.831	INTRON CG3764
3L	9887414	3L_9887414_SNP [dm3] 3L_9894314_SNP [dm6]	T	C	2.396e^-4	0.831	UPSTREAM CG6709 DOWNSTREAM CalpB & 1 other INTRON CG14164 & 1 other
3L	10698619	3L_10698619_SNP [dm3] 3L_10705519_SNP [dm6]	T	C	2.402e^-4	0.831	INTERGENIC
3L	10698621	3L_10698621_SNP [dm3] 3L_10705521_SNP [dm6]	G	A	2.402e^-4	0.831	INTERGENIC
3L	11361972	3L_11361972_SNP [dm3] 3L_11368872_SNP [dm6]	T	C	2.403e^-4	0.831	INTERGENIC
3R	19811449	3R_19811449_SNP [dm3] 3R_23985727_SNP [dm6]	C	T	2.405e^-4	0.831	UPSTREAM CG5902 DOWNSTREAM CR31451 INTRON CG13603	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	6695797	3R_6695797_SNP [dm3] 3R_10870075_SNP [dm6]	A	G	2.406e^-4	0.831	UTR_3_PRIME Tsp86D DOWNSTREAM Fdh	TF binding site mE1_TFBS_cad
2L	10051938	2L_10051938_SNP [dm3] 2L_10051938_SNP [dm6]	G	A	2.407e^-4	0.831	DOWNSTREAM CG33301 EXON CR44874
3L	5244117	3L_5244117_SNP [dm3] 3L_5251017_SNP [dm6]	T	A	2.421e^-4	0.831	INTRON shep
3L	5244119	3L_5244119_SNP [dm3] 3L_5251019_SNP [dm6]	C	T	2.421e^-4	0.831	INTRON shep
2R	3000624	2R_3000624_SNP [dm3] 2R_7113119_SNP [dm6]	G	A	2.437e^-4	0.831	INTRON esn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
X	10274429	X_10274429_SNP [dm3] X_10380396_SNP [dm6]	G	A	2.442e^-4	0.831	SYNONYMOUS_CODING CG32681 INTRON CG17841	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10056524	2L_10056524_SNP [dm3] 2L_10056524_SNP [dm6]	G	C	2.442e^-4	0.831	UPSTREAM Pen DOWNSTREAM Cpr31A INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	10056526	2L_10056526_SNP [dm3] 2L_10056526_SNP [dm6]	A	G	2.442e^-4	0.831	UPSTREAM Pen DOWNSTREAM Cpr31A INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	10056646	2L_10056646_SNP [dm3] 2L_10056646_SNP [dm6]	G	T	2.442e^-4	0.831	UPSTREAM Pen DOWNSTREAM Cpr31A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11218814	3R_11218814_SNP [dm3] 3R_15393092_SNP [dm6]	A	G	2.452e^-4	0.831	INTRON Rbp
3L	3973320	3L_3973320_SNP [dm3] 3L_3973320_SNP [dm6]	G	A	2.454e^-4	0.831	SYNONYMOUS_CODING CG43915	regulatory region REDfly_CRMs
3R	9298396	3R_9298396_INS [dm3] 3R_13472674_INS [dm6]	C	CC	2.458e^-4	0.831	INTERGENIC
2L	4203619	2L_4203619_SNP [dm3] 2L_4203619_SNP [dm6]	T	C	2.463e^-4	0.831	NON_SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_sens
3L	18068066	3L_18068066_SNP [dm3] 3L_18074966_SNP [dm6]	T	A	2.480e^-4	0.831	EXON CR45391
3L	18068093	3L_18068093_SNP [dm3] 3L_18074993_SNP [dm6]	A	T	2.480e^-4	0.831	EXON CR45391
2R	7523803	2R_7523803_SNP [dm3] 2R_11636298_SNP [dm6]	G	C	2.480e^-4	0.831	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	5574603	3R_5574603_SNP [dm3] 3R_9748881_SNP [dm6]	A	T	2.484e^-4	0.831	INTRON PpD3	TF binding site mE1_TFBS_sens
2L	12151332	2L_12151332_DEL [dm3] 2L_12151332_DEL [dm6]	AC	A	2.489e^-4	0.831	INTRON CG31760
3L	12337177	3L_12337177_SNP [dm3] 3L_12344077_SNP [dm6]	A	C	2.493e^-4	0.831	INTRON CrzR
2L	15163993	2L_15163993_SNP [dm3] 2L_15163993_SNP [dm6]	G	T	2.501e^-4	0.831	INTRON CG4168
3L	1934259	3L_1934259_SNP [dm3] 3L_1934259_SNP [dm6]	G	A	2.503e^-4	0.831	DOWNSTREAM Dbx INTRON CG5687	TF binding site mE1_TFBS_cad
X	3345256	X_3345256_SNP [dm3] X_3451223_SNP [dm6]	G	A	2.505e^-4	0.831	INTRON CR44999	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	10455690	3R_10455690_SNP [dm3] 3R_14629968_SNP [dm6]	A	T	2.505e^-4	0.831	UPSTREAM Cad88C INTRON CG7886	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8665791	2L_8665791_SNP [dm3] 2L_8665791_SNP [dm6]	G	A	2.506e^-4	0.831	INTRON Sema-1a
3R	19811818	3R_19811818_SNP [dm3] 3R_23986096_SNP [dm6]	G	A	2.516e^-4	0.831	SYNONYMOUS_CODING CG13603 UPSTREAM CG5902	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	111618	2L_111618_DEL [dm3] 2L_111618_DEL [dm6]	AGACTTTGGTA...	A	2.518e^-4	0.831	DOWNSTREAM Sam-S INTRON Sam-S
3L	8037469	3L_8037469_DEL [dm3] 3L_8044369_DEL [dm6]	TT	T	2.521e^-4	0.831	INTRON nmo
3L	8898332	3L_8898332_SNP [dm3] 3L_8905232_SNP [dm6]	C	T	2.526e^-4	0.831	UPSTREAM TrpA1 DOWNSTREAM mfr INTERGENIC
3R	25881278	3R_25881278_SNP [dm3] 3R_30055556_SNP [dm6]	A	G	2.526e^-4	0.831	SYNONYMOUS_CODING spn-A UPSTREAM CG15526 DOWNSTREAM CG7946	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	14603231	2R_14603231_SNP [dm3] 2R_18715726_SNP [dm6]	G	A	2.532e^-4	0.831	INTERGENIC
3R	3121944	3R_3121944_SNP [dm3] 3R_7296222_SNP [dm6]	C	A	2.532e^-4	0.831	INTRON rn
3L	1520999	3L_1520999_SNP [dm3] 3L_1520999_SNP [dm6]	G	T	2.536e^-4	0.831	INTRON Psa	TF binding site mE1_TFBS_cad
3R	10595935	3R_10595935_SNP [dm3] 3R_14770213_SNP [dm6]	T	G	2.541e^-4	0.831	INTRON jvl
2L	3327049	2L_3327049_SNP [dm3] 2L_3327049_SNP [dm6]	G	T	2.555e^-4	0.831	UPSTREAM CG33282 DOWNSTREAM CG33281 INTERGENIC
3L	18643284	3L_18643284_SNP [dm3] 3L_18650184_SNP [dm6]	C	T	2.556e^-4	0.831	INTRON MYPT-75D
X	20878407	X_20878407_SNP [dm3] X_21007380_SNP [dm6]	G	T	2.560e^-4	0.831	INTERGENIC
3L	10898989	3L_10898989_SNP [dm3] 3L_10905889_SNP [dm6]	T	C	2.562e^-4	0.831	INTERGENIC
3L	8221012	3L_8221012_SNP [dm3] 3L_8227912_SNP [dm6]	G	A	2.564e^-4	0.831	INTERGENIC
3L	18790115	3L_18790115_SNP [dm3] 3L_18797015_SNP [dm6]	G	T	2.572e^-4	0.831	INTRON ftz-f1
2L	8945225	2L_8945225_SNP [dm3] 2L_8945225_SNP [dm6]	C	T	2.576e^-4	0.831	INTRON C1GalTA	TF binding site mE1_TFBS_cad
3L	7649593	3L_7649593_SNP [dm3] 3L_7656493_SNP [dm6]	T	C	2.579e^-4	0.831	UTR_3_PRIME Ank2 INTRON CG32373 & 1 other	TF binding site mE1_TFBS_cad
3L	13288538	3L_13288538_SNP [dm3] 3L_13295438_SNP [dm6]	C	T	2.579e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27030755	3R_27030755_SNP [dm3] 3R_31205033_SNP [dm6]	A	G	2.586e^-4	0.831	INTRON chp
3L	2201181	3L_2201181_SNP [dm3] 3L_2201181_SNP [dm6]	T	C	2.587e^-4	0.831	INTERGENIC
2R	1099463	2R_1099463_SNP [dm3] 2R_5211958_SNP [dm6]	C	A	2.599e^-4	0.831	INTRON Nipped-A	transposable element FlyBase
3L	9919451	3L_9919451_SNP [dm3] 3L_9926351_SNP [dm6]	G	T	2.603e^-4	0.831	INTRON CG34356
2L	13927225	2L_13927225_SNP [dm3] 2L_13927225_SNP [dm6]	T	A	2.605e^-4	0.831	INTRON Ance-3
3R	12277898	3R_12277898_SNP [dm3] 3R_16452176_SNP [dm6]	T	G	2.610e^-4	0.831	SYNONYMOUS_CODING Pak3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	5111974	2L_5111974_SNP [dm3] 2L_5111974_SNP [dm6]	C	T	2.610e^-4	0.831	INTRON Msp300
3R	21354561	3R_21354561_SNP [dm3] 3R_25528839_SNP [dm6]	C	T	2.614e^-4	0.831	INTRON msi
2R	15711837	2R_15711837_SNP [dm3] 2R_19824332_SNP [dm6]	T	C	2.621e^-4	0.831	INTERGENIC
2R	19110686	2R_19110686_SNP [dm3] 2R_23223163_SNP [dm6]	C	G	2.626e^-4	0.831	INTERGENIC
2L	1586010	2L_1586010_SNP [dm3] 2L_1586010_SNP [dm6]	G	A	2.630e^-4	0.831	SYNONYMOUS_CODING CG10869 INTRON haf
3R	12548399	3R_12548399_SNP [dm3] 3R_16722677_SNP [dm6]	A	T	2.633e^-4	0.831	INTRON Ubx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4521176	2L_4521176_SNP [dm3] 2L_4521176_SNP [dm6]	A	G	2.650e^-4	0.831	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	17704614	3L_17704614_SNP [dm3] 3L_17711514_SNP [dm6]	A	G	2.651e^-4	0.831	INTRON Ccn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19218639	3L_19218639_INS [dm3] 3L_19225539_INS [dm6]	C	CGCATGTACTTT...	2.658e^-4	0.831	INTRON fz2	TF binding site mE1_TFBS_inv
3L	14888946	3L_14888946_SNP [dm3] 3L_14895846_SNP [dm6]	C	A	2.663e^-4	0.831	INTERGENIC
3L	12606363	3L_12606363_SNP [dm3] 3L_12613263_SNP [dm6]	A	T	2.666e^-4	0.831	INTRON caup	silencer mE1_HDAC_PRE
X	16147987	X_16147987_INS [dm3] X_16253954_INS [dm6]	A	AA	2.670e^-4	0.831	UPSTREAM snRNA:U2:14B DOWNSTREAM snRNA:U5:14B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	20155651	3L_20155651_SNP [dm3] 3L_20162551_SNP [dm6]	A	G	2.676e^-4	0.831	SYNONYMOUS_CODING CG42674 INTRON CG42674	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26288134	3R_26288134_SNP [dm3] 3R_30462412_SNP [dm6]	G	T	2.679e^-4	0.831	INTRON CDase	TF binding site BDTNP1_TFBS_da
3R	4073806	3R_4073806_SNP [dm3] 3R_8248084_SNP [dm6]	C	T	2.682e^-4	0.831	UPSTREAM CG15864 DOWNSTREAM CG33722 & 1 other INTERGENIC
3L	5231465	3L_5231465_SNP [dm3] 3L_5238365_SNP [dm6]	C	A	2.689e^-4	0.831	INTRON shep
2R	4085054	2R_4085054_SNP [dm3] 2R_8197549_SNP [dm6]	G	A	2.696e^-4	0.831	INTRON LRP1
X	18401990	X_18401990_SNP [dm3] X_18507957_SNP [dm6]	T	G	2.697e^-4	0.831	NON_SYNONYMOUS_CODING Ggt-1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	6776593	3R_6776593_SNP [dm3] 3R_10950871_SNP [dm6]	A	C	2.698e^-4	0.831	INTRON Tengl4	TF binding site mE1_TFBS_HSA
2R	10430352	2R_10430352_SNP [dm3] 2R_14542847_SNP [dm6]	C	T	2.702e^-4	0.831	INTRON ttv
3L	6612799	3L_6612799_SNP [dm3] 3L_6619699_SNP [dm6]	G	A	2.707e^-4	0.831	DOWNSTREAM CG8398 INTERGENIC
3L	19900275	3L_19900275_SNP [dm3] 3L_19907175_SNP [dm6]	A	G	2.711e^-4	0.831	INTRON Mi-2 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	15998173	X_15998173_SNP [dm3] X_16104140_SNP [dm6]	C	T	2.714e^-4	0.831	INTRON CG42354 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	2264473	2L_2264473_SNP [dm3] 2L_2264473_SNP [dm6]	A	G	2.718e^-4	0.831	DOWNSTREAM CG4270 INTRON CG34049
3R	26102966	3R_26102966_SNP [dm3] 3R_30277244_SNP [dm6]	A	C	2.727e^-4	0.831	UPSTREAM hdc INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14746023	3R_14746023_SNP [dm3] 3R_18920301_SNP [dm6]	G	A	2.730e^-4	0.831	UTR_5_PRIME Xrp1 INTRON Xrp1
2R	15768433	2R_15768433_SNP [dm3] 2R_19880928_SNP [dm6]	A	C	2.731e^-4	0.831	UPSTREAM CG13872 INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2R	15768435	2R_15768435_DEL [dm3] 2R_19880930_DEL [dm6]	TAAAGATACCA...	T	2.731e^-4	0.831	UPSTREAM CG13872 INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2R	11410860	2R_11410860_SNP [dm3] 2R_15523355_SNP [dm6]	G	A	2.733e^-4	0.831	SYNONYMOUS_CODING Khc-73	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10376282	3L_10376282_SNP [dm3] 3L_10383182_SNP [dm6]	T	A	2.737e^-4	0.831	INTERGENIC
2R	11187527	2R_11187527_SNP [dm3] 2R_15300022_SNP [dm6]	C	T	2.750e^-4	0.831	INTRON Trpm
2R	19530238	2R_19530238_INS [dm3] 2R_23642715_INS [dm6]	A	GCCAAAG	2.753e^-4	0.831	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	3278229	3L_3278229_SNP [dm3] 3L_3278229_SNP [dm6]	G	A	2.754e^-4	0.831	INTERGENIC
3L	11451408	3L_11451408_SNP [dm3] 3L_11458308_SNP [dm6]	A	T	2.756e^-4	0.831	UTR_5_PRIME CG12289 UPSTREAM CG7551	TF binding site BDTNP1_TFBS_sna
3R	14742392	3R_14742392_SNP [dm3] 3R_18916670_SNP [dm6]	T	C	2.758e^-4	0.831	INTRON Xrp1	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3R	14750103	3R_14750103_SNP [dm3] 3R_18924381_SNP [dm6]	C	T	2.758e^-4	0.831	INTRON Xrp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	13499125	2R_13499125_SNP [dm3] 2R_17611620_SNP [dm6]	C	T	2.763e^-4	0.831	INTRON CG10936
3L	2993811	3L_2993811_SNP [dm3] 3L_2993811_SNP [dm6]	C	G	2.767e^-4	0.831	INTERGENIC
3L	5271612	3L_5271612_SNP [dm3] 3L_5278512_SNP [dm6]	C	T	2.767e^-4	0.831	UPSTREAM shep INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	10702322	3R_10702322_SNP [dm3] 3R_14876600_SNP [dm6]	C	G	2.768e^-4	0.831	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	17159985	3L_17159985_SNP [dm3] 3L_17166885_SNP [dm6]	G	A	2.771e^-4	0.831	INTRON Rbp6 EXON CR43433
3R	23159493	3R_23159493_SNP [dm3] 3R_27333771_SNP [dm6]	C	G	2.771e^-4	0.831	INTERGENIC
3R	21968891	3R_21968891_SNP [dm3] 3R_26143169_SNP [dm6]	G	T	2.773e^-4	0.831	INTERGENIC
2R	8778886	2R_8778886_SNP [dm3] 2R_12891381_SNP [dm6]	G	C	2.776e^-4	0.831	INTRON vg	TF binding site mE1_TFBS_cad
2L	7762897	2L_7762897_SNP [dm3] 2L_7762897_SNP [dm6]	G	C	2.777e^-4	0.831	INTRON CG7196
3L	6082202	3L_6082202_SNP [dm3] 3L_6089102_SNP [dm6]	T	C	2.787e^-4	0.831	SYNONYMOUS_CODING CG13293	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19116633	2R_19116633_SNP [dm3] 2R_23229110_SNP [dm6]	T	C	2.801e^-4	0.831	INTERGENIC
3L	20600992	3L_20600992_SNP [dm3] 3L_20607892_SNP [dm6]	G	A	2.812e^-4	0.831	INTRON knrl
X	16147977	X_16147977_SNP [dm3] X_16253944_SNP [dm6]	C	G	2.821e^-4	0.831	UPSTREAM snRNA:U2:14B DOWNSTREAM snRNA:U5:14B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	22032741	2L_22032741_SNP [dm3] 2L_22032741_SNP [dm6]	C	A	2.824e^-4	0.831	EXON CR45335	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	23260369	3R_23260369_SNP [dm3] 3R_27434647_SNP [dm6]	C	A	2.825e^-4	0.831	INTRON side	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27080721	3R_27080721_SNP [dm3] 3R_31254999_SNP [dm6]	G	A	2.827e^-4	0.831	UPSTREAM spn-F & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	5111308	2L_5111308_SNP [dm3] 2L_5111308_SNP [dm6]	G	C	2.828e^-4	0.831	INTRON Msp300
2L	5111352	2L_5111352_SNP [dm3] 2L_5111352_SNP [dm6]	A	T	2.828e^-4	0.831	INTRON Msp300
2L	5111355	2L_5111355_SNP [dm3] 2L_5111355_SNP [dm6]	C	G	2.828e^-4	0.831	INTRON Msp300
2R	1120842	2R_1120842_SNP [dm3] 2R_5233337_SNP [dm6]	C	A	2.837e^-4	0.831	INTRON Nipped-A	transposable element FlyBase
2L	16494548	2L_16494548_SNP [dm3] 2L_16494548_SNP [dm6]	G	C	2.838e^-4	0.831	INTRON Tpr2	TF binding site mE1_TFBS_bab1
3R	14721473	3R_14721473_INS [dm3] 3R_18895751_INS [dm6]	T	TTT	2.844e^-4	0.831	INTERGENIC
3R	14742216	3R_14742216_DEL [dm3] 3R_18916494_DEL [dm6]	GATAAAAGTG	G	2.844e^-4	0.831	INTRON Xrp1	TF binding site mE1_TFBS_cnc
3R	25882881	3R_25882881_SNP [dm3] 3R_30057159_SNP [dm6]	T	A	2.847e^-4	0.831	NON_SYNONYMOUS_CODING CG34317 UTR_5_PRIME CG7950 DOWNSTREAM CG15526	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	10156071	3L_10156071_SNP [dm3] 3L_10162971_SNP [dm6]	C	G	2.855e^-4	0.831	INTRON dpr10
3R	14738717	3R_14738717_SNP [dm3] 3R_18912995_SNP [dm6]	G	T	2.857e^-4	0.831	UPSTREAM CG14291 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	13983657	X_13983657_SNP [dm3] X_14089624_SNP [dm6]	A	T	2.858e^-4	0.831	INTERGENIC
3L	16784820	3L_16784820_SNP [dm3] 3L_16791720_SNP [dm6]	G	A	2.859e^-4	0.831	UTR_3_PRIME CG9674 INTRON CG9674	TF binding site mE1_TFBS_cad
X	8217151	X_8217151_SNP [dm3] X_8323118_SNP [dm6]	C	T	2.862e^-4	0.831	INTRON nAChRalpha3
2L	9063772	2L_9063772_SNP [dm3] 2L_9063772_SNP [dm6]	C	T	2.863e^-4	0.831	INTRON CG31708	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	3345453	X_3345453_INS [dm3] X_3451420_INS [dm6]	T	TTTTT	2.876e^-4	0.831	INTRON CR44999	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	3023049	3L_3023049_SNP [dm3] 3L_3023049_SNP [dm6]	C	G	2.879e^-4	0.831	INTERGENIC
3L	4342417	3L_4342417_SNP [dm3] 3L_4342417_SNP [dm6]	G	A	2.879e^-4	0.831	INTRON Cip4
3L	440234	3L_440234_SNP [dm3] 3L_440234_SNP [dm6]	T	A	2.883e^-4	0.831	INTRON klar	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16147824	X_16147824_SNP [dm3] X_16253791_SNP [dm6]	C	A	2.902e^-4	0.831	UPSTREAM snRNA:U2:14B DOWNSTREAM snRNA:U5:14B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	6015518	3R_6015518_SNP [dm3] 3R_10189796_SNP [dm6]	G	A	2.904e^-4	0.831	UPSTREAM CG12814 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	12790598	3R_12790598_SNP [dm3] 3R_16964876_SNP [dm6]	A	G	2.909e^-4	0.831	UPSTREAM Abd-B INTRON Abd-B
3L	14888997	3L_14888997_SNP [dm3] 3L_14895897_SNP [dm6]	C	T	2.909e^-4	0.831	INTERGENIC
2L	104207	2L_104207_SNP [dm3] 2L_104207_SNP [dm6]	T	G	2.913e^-4	0.831	UTR_3_PRIME Nhe1 DOWNSTREAM CG11377
3R	6707998	3R_6707998_SNP [dm3] 3R_10882276_SNP [dm6]	A	T	2.915e^-4	0.831	UPSTREAM Tpc1 DOWNSTREAM CG14696 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
X	8217198	X_8217198_SNP [dm3] X_8323165_SNP [dm6]	A	C	2.917e^-4	0.831	INTRON nAChRalpha3
3R	18989933	3R_18989933_SNP [dm3] 3R_23164211_SNP [dm6]	C	T	2.920e^-4	0.831	INTERGENIC
3L	20175933	3L_20175933_SNP [dm3] 3L_20182833_SNP [dm6]	T	G	2.926e^-4	0.831	INTRON CG42674	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	19515309	3L_19515309_SNP [dm3] 3L_19522209_SNP [dm6]	A	G	2.931e^-4	0.831	INTRON Cpr76Bc
2L	5111253	2L_5111253_SNP [dm3] 2L_5111253_SNP [dm6]	T	A	2.939e^-4	0.831	INTRON Msp300
X	12195654	X_12195654_SNP [dm3] X_12301621_SNP [dm6]	A	T	2.941e^-4	0.831	INTRON Ten-a
3R	13794589	3R_13794589_SNP [dm3] 3R_17968867_SNP [dm6]	C	G	2.952e^-4	0.831	INTRON cpo
2R	19503954	2R_19503954_SNP [dm3] 2R_23616431_SNP [dm6]	C	T	2.954e^-4	0.831	INTRON CG17664
3L	12165398	3L_12165398_SNP [dm3] 3L_12172298_SNP [dm6]	G	T	2.961e^-4	0.831	INTRON Rh7
3R	25165426	3R_25165426_SNP [dm3] 3R_29339704_SNP [dm6]	T	A	2.968e^-4	0.831	INTERGENIC
3L	11309872	3L_11309872_SNP [dm3] 3L_11316772_SNP [dm6]	C	T	2.968e^-4	0.831	DOWNSTREAM CR44361 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15083172	2L_15083172_SNP [dm3] 2L_15083172_SNP [dm6]	T	A	2.971e^-4	0.831	INTRON CG15270
2L	14305453	2L_14305453_SNP [dm3] 2L_14305453_SNP [dm6]	C	T	2.974e^-4	0.831	INTRON wb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	10328151	X_10328151_SNP [dm3] X_10434118_SNP [dm6]	C	T	2.975e^-4	0.831	INTRON CG32683
2R	9456232	2R_9456232_SNP [dm3] 2R_13568727_SNP [dm6]	A	T	2.976e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_ttk mE1_TFBS_zfh1
2R	17128919	2R_17128919_SNP [dm3] 2R_21241414_SNP [dm6]	A	G	2.979e^-4	0.831	INTRON ASPP
2L	13927226	2L_13927226_SNP [dm3] 2L_13927226_SNP [dm6]	C	A	2.985e^-4	0.831	INTRON Ance-3
3L	10092012	3L_10092012_INS [dm3] 3L_10098912_INS [dm6]	T	TGCTTTATG	2.993e^-4	0.831	UPSTREAM CG42825 DOWNSTREAM CG42826 INTRON dpr6
3L	10092017	3L_10092017_INS [dm3] 3L_10098917_INS [dm6]	G	GTG	2.993e^-4	0.831	UPSTREAM CG42825 DOWNSTREAM CG42826 INTRON dpr6
3R	27137719	3R_27137719_SNP [dm3] 3R_31311997_SNP [dm6]	C	T	3.000e^-4	0.831	INTRON CG34347
3L	17629007	3L_17629007_SNP [dm3] 3L_17635907_SNP [dm6]	G	A	3.001e^-4	0.831	INTRON CG7497
X	12195680	X_12195680_SNP [dm3] X_12301647_SNP [dm6]	G	A	3.003e^-4	0.831	INTRON Ten-a
3L	17636101	3L_17636101_SNP [dm3] 3L_17643001_SNP [dm6]	G	T	3.009e^-4	0.831	INTRON Pep	TF binding site BDTNP1_TFBS_dl
3R	21002984	3R_21002984_SNP [dm3] 3R_25177262_SNP [dm6]	G	T	3.012e^-4	0.831	INTRON lobo	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
X	13132717	X_13132717_SNP [dm3] X_13238684_SNP [dm6]	T	A	3.013e^-4	0.831	INTRON mew	TF binding site BDTNP1_TFBS_dl
3R	27194484	3R_27194484_SNP [dm3] 3R_31368762_SNP [dm6]	A	G	3.015e^-4	0.831	INTRON CG34347
3R	21778382	3R_21778382_DEL [dm3] 3R_25952660_DEL [dm6]	TT	T	3.019e^-4	0.831	INTRON CCAP-R	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9086088	2L_9086088_SNP [dm3] 2L_9086088_SNP [dm6]	A	C	3.021e^-4	0.831	INTRON Toll-4
3R	23009388	3R_23009388_SNP [dm3] 3R_27183666_SNP [dm6]	T	C	3.030e^-4	0.831	INTRON Ser	TF binding site mE1_TFBS_cad
X	2926734	X_2926734_SNP [dm3] X_3032701_SNP [dm6]	C	A	3.034e^-4	0.831	INTRON kirre
2R	9455498	2R_9455498_SNP [dm3] 2R_13567993_SNP [dm6]	G	C	3.058e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
3L	873194	3L_873194_SNP [dm3] 3L_873194_SNP [dm6]	A	T	3.061e^-4	0.831	INTRON CG32479	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	19109400	2R_19109400_SNP [dm3] 2R_23221877_SNP [dm6]	C	T	3.062e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	2695937	3R_2695937_SNP [dm3] 3R_6870215_SNP [dm6]	A	G	3.072e^-4	0.831	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_sens
3R	27093983	3R_27093983_SNP [dm3] 3R_31268261_SNP [dm6]	A	T	3.078e^-4	0.831	INTRON ppk24	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13825630	2L_13825630_SNP [dm3] 2L_13825630_SNP [dm6]	G	A	3.080e^-4	0.831	SYNONYMOUS_CODING tam	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	12281340	2L_12281340_SNP [dm3] 2L_12281340_SNP [dm6]	A	G	3.087e^-4	0.831	INTRON aret
2R	9455374	2R_9455374_SNP [dm3] 2R_13567869_SNP [dm6]	A	T	3.097e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
2L	1585980	2L_1585980_SNP [dm3] 2L_1585980_SNP [dm6]	C	T	3.118e^-4	0.831	SYNONYMOUS_CODING CG10869 INTRON haf
3R	6677929	3R_6677929_SNP [dm3] 3R_10852207_SNP [dm6]	C	A	3.127e^-4	0.831	UPSTREAM CG4565 DOWNSTREAM CG42394 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	5306888	3R_5306888_SNP [dm3] 3R_9481166_SNP [dm6]	T	C	3.129e^-4	0.831	INTRON CG16779
X	12195656	X_12195656_SNP [dm3] X_12301623_SNP [dm6]	C	G	3.134e^-4	0.831	INTRON Ten-a
2R	7951376	2R_7951376_SNP [dm3] 2R_12063871_SNP [dm6]	A	T	3.139e^-4	0.831	DOWNSTREAM CG8888 INTERGENIC
2L	4692310	2L_4692310_SNP [dm3] 2L_4692310_SNP [dm6]	C	T	3.141e^-4	0.831	INTERGENIC
3R	17469661	3R_17469661_DEL [dm3] 3R_21643939_DEL [dm6]	AA	A	3.143e^-4	0.831	INTRON E2f	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	17469666	3R_17469666_SNP [dm3] 3R_21643944_SNP [dm6]	A	C	3.143e^-4	0.831	INTRON E2f	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	4527732	2L_4527732_SNP [dm3] 2L_4527732_SNP [dm6]	A	G	3.156e^-4	0.831	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	27125287	3R_27125287_SNP [dm3] 3R_31299565_SNP [dm6]	C	T	3.157e^-4	0.831	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	6617601	3L_6617601_SNP [dm3] 3L_6624501_SNP [dm6]	A	G	3.164e^-4	0.831	UTR_5_PRIME GluRIA
3R	3993466	3R_3993466_SNP [dm3] 3R_8167744_SNP [dm6]	C	T	3.171e^-4	0.831	INTRON grn	TF binding site mE1_TFBS_chinmo
3L	17936475	3L_17936475_SNP [dm3] 3L_17943375_SNP [dm6]	T	A	3.172e^-4	0.831	INTRON CG43174
3R	19180164	3R_19180164_SNP [dm3] 3R_23354442_SNP [dm6]	G	A	3.174e^-4	0.831	SYNONYMOUS_CODING DNApol-epsilon DOWNSTREAM ATPsyn-Cf6	TF binding site mE1_TFBS_sens
3R	9736544	3R_9736544_SNP [dm3] 3R_13910822_SNP [dm6]	G	A	3.185e^-4	0.831	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6785521	3L_6785521_SNP [dm3] 3L_6792421_SNP [dm6]	T	C	3.187e^-4	0.831	SYNONYMOUS_CODING vvl UTR_3_PRIME vvl	TF binding site mE1_TFBS_chinmo
3R	5571743	3R_5571743_SNP [dm3] 3R_9746021_SNP [dm6]	A	G	3.189e^-4	0.831	UTR_5_PRIME CG34409 DOWNSTREAM CG12948	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24675937	3R_24675937_SNP [dm3] 3R_28850215_SNP [dm6]	A	G	3.190e^-4	0.831	INTRON spg
3L	12371962	3L_12371962_SNP [dm3] 3L_12378862_SNP [dm6]	G	A	3.194e^-4	0.831	INTRON Ncc69
2L	488850	2L_488850_SNP [dm3] 2L_488850_SNP [dm6]	T	C	3.195e^-4	0.831	INTRON ush	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18922453	2R_18922453_SNP [dm3] 2R_23034930_SNP [dm6]	A	T	3.198e^-4	0.831	INTRON twi & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	16412227	2L_16412227_SNP [dm3] 2L_16412227_SNP [dm6]	G	A	3.202e^-4	0.831	INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	16383825	2L_16383825_SNP [dm3] 2L_16383825_SNP [dm6]	T	G	3.204e^-4	0.831	INTERGENIC
3L	20671339	3L_20671339_SNP [dm3] 3L_20678239_SNP [dm6]	G	A	3.204e^-4	0.831	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15055737	2L_15055737_SNP [dm3] 2L_15055737_SNP [dm6]	A	C	3.206e^-4	0.831	INTRON ck	regulatory region REDfly_CRMs
2L	18576652	2L_18576652_SNP [dm3] 2L_18576652_SNP [dm6]	T	A	3.209e^-4	0.831	INTRON Pde11
X	3383913	X_3383913_INS [dm3] X_3489880_INS [dm6]	T	TAACCTCT	3.213e^-4	0.831	UTR_3_PRIME CG10803 DOWNSTREAM CG10803 INTRON CR44999	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
X	3383923	X_3383923_SNP [dm3] X_3489890_SNP [dm6]	A	G	3.213e^-4	0.831	UTR_3_PRIME CG10803 DOWNSTREAM CG10803 INTRON CR44999	TF binding site mE1_TFBS_HSA
X	5716739	X_5716739_DEL [dm3] X_5822706_DEL [dm6]	ACATA	A	3.216e^-4	0.831	INTRON CG15765	TF binding site mE1_TFBS_chinmo
3L	8580653	3L_8580653_SNP [dm3] 3L_8587553_SNP [dm6]	A	T	3.222e^-4	0.831	SYNONYMOUS_CODING CG43078 UTR_5_PRIME CG43078	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14752251	2L_14752251_SNP [dm3] 2L_14752251_SNP [dm6]	A	G	3.232e^-4	0.831	INTERGENIC
2L	18365038	2L_18365038_SNP [dm3] 2L_18365038_SNP [dm6]	A	G	3.233e^-4	0.831	INTRON Fas3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15138121	X_15138121_SNP [dm3] X_15244088_SNP [dm6]	T	G	3.234e^-4	0.831	SYNONYMOUS_CODING PPYR1	TF binding site mE1_TFBS_HSA
3L	6617628	3L_6617628_SNP [dm3] 3L_6624528_SNP [dm6]	C	G	3.235e^-4	0.831	UTR_5_PRIME GluRIA
3R	17559641	3R_17559641_SNP [dm3] 3R_21733919_SNP [dm6]	C	T	3.237e^-4	0.831	INTERGENIC
3R	27042268	3R_27042268_INS [dm3] 3R_31216546_INS [dm6]	G	GGAG	3.241e^-4	0.831	UTR_3_PRIME CG1746 UPSTREAM CG15561 DOWNSTREAM CG1746 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	6082157	3L_6082157_SNP [dm3] 3L_6089057_SNP [dm6]	T	C	3.241e^-4	0.831	SYNONYMOUS_CODING CG13293	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	13836106	X_13836106_SNP [dm3] X_13942073_SNP [dm6]	G	A	3.243e^-4	0.831	INTRON mamo
3L	19901309	3L_19901309_DEL [dm3] 3L_19908209_DEL [dm6]	AGGGAAAAGACAGAGCGA...	A	3.245e^-4	0.831	INTRON Mi-2 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	18974622	2L_18974622_SNP [dm3] 2L_18974622_SNP [dm6]	A	T	3.252e^-4	0.831	UPSTREAM CG10431 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	13373929	3R_13373929_SNP [dm3] 3R_17548207_SNP [dm6]	A	G	3.259e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5241174	3L_5241174_SNP [dm3] 3L_5248074_SNP [dm6]	G	A	3.274e^-4	0.831	INTRON shep
3L	3559739	3L_3559739_SNP [dm3] 3L_3559739_SNP [dm6]	A	G	3.282e^-4	0.831	INTRON Eip63E	TF binding site mE1_TFBS_bab1
X	3383841	X_3383841_SNP [dm3] X_3489808_SNP [dm6]	T	G	3.286e^-4	0.831	UTR_3_PRIME CG10803 DOWNSTREAM CG10803 INTRON CR44999	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	12283030	2L_12283030_SNP [dm3] 2L_12283030_SNP [dm6]	C	T	3.288e^-4	0.831	INTRON aret
3R	6718099	3R_6718099_SNP [dm3] 3R_10892377_SNP [dm6]	C	T	3.288e^-4	0.831	SYNONYMOUS_CODING CG6621 INTRON Leash	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	12801602	3R_12801602_SNP [dm3] 3R_16975880_SNP [dm6]	A	C	3.291e^-4	0.831	DOWNSTREAM Actn3 & 1 other INTERGENIC
3R	18225602	3R_18225602_SNP [dm3] 3R_22399880_SNP [dm6]	G	A	3.300e^-4	0.831	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10055419	2L_10055419_SNP [dm3] 2L_10055419_SNP [dm6]	G	T	3.302e^-4	0.831	SYNONYMOUS_CODING Cpr31A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5904102	3L_5904102_SNP [dm3] 3L_5911002_SNP [dm6]	C	T	3.308e^-4	0.831	INTRON CG13288
3L	10993283	3L_10993283_SNP [dm3] 3L_11000183_SNP [dm6]	G	A	3.311e^-4	0.831	INTRON klu	TF binding site mE1_TFBS_chinmo
2R	11972698	2R_11972698_SNP [dm3] 2R_16085193_SNP [dm6]	A	G	3.313e^-4	0.831	SYNONYMOUS_CODING Dg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	22440914	3R_22440914_SNP [dm3] 3R_26615192_SNP [dm6]	C	G	3.316e^-4	0.831	INTERGENIC
X	20813615	X_20813615_SNP [dm3] X_20942588_SNP [dm6]	C	T	3.317e^-4	0.831	INTERGENIC
2L	8665801	2L_8665801_SNP [dm3] 2L_8665801_SNP [dm6]	T	C	3.323e^-4	0.831	INTRON Sema-1a
2L	2264530	2L_2264530_SNP [dm3] 2L_2264530_SNP [dm6]	C	T	3.330e^-4	0.831	SYNONYMOUS_CODING CG34049 DOWNSTREAM CG4270
3L	11426188	3L_11426188_SNP [dm3] 3L_11433088_SNP [dm6]	G	A	3.342e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	22373929	3R_22373929_DEL [dm3] 3R_26548207_DEL [dm6]	TATTCGCT	T	3.343e^-4	0.831	INTRON scrib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16351188	3L_16351188_SNP [dm3] 3L_16358088_SNP [dm6]	G	A	3.344e^-4	0.831	INTRON CG45057
2R	6847679	2R_6847679_SNP [dm3] 2R_10960174_SNP [dm6]	T	C	3.351e^-4	0.831	INTERGENIC
2L	6114336	2L_6114336_SNP [dm3] 2L_6114336_SNP [dm6]	C	T	3.356e^-4	0.831	INTRON stai
2R	8778885	2R_8778885_SNP [dm3] 2R_12891380_SNP [dm6]	A	G	3.358e^-4	0.831	INTRON vg	TF binding site mE1_TFBS_cad
2L	11798759	2L_11798759_SNP [dm3] 2L_11798759_SNP [dm6]	G	A	3.358e^-4	0.831	SYNONYMOUS_CODING crol UPSTREAM snoRNA:Me18S-A934	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3L	3076081	3L_3076081_SNP [dm3] 3L_3076081_SNP [dm6]	C	A	3.360e^-4	0.831	INTRON CG11486	TF binding site mE1_TFBS_cad
3R	5214319	3R_5214319_DEL [dm3] 3R_9388597_DEL [dm6]	TT	T	3.383e^-4	0.831	INTRON FER
3L	1843730	3L_1843730_SNP [dm3] 3L_1843730_SNP [dm6]	T	C	3.388e^-4	0.831	INTERGENIC
3R	17242185	3R_17242185_SNP [dm3] 3R_21416463_SNP [dm6]	G	C	3.389e^-4	0.831	INTRON lbl
2R	14795903	2R_14795903_SNP [dm3] 2R_18908398_SNP [dm6]	A	C	3.395e^-4	0.831	DOWNSTREAM Vha100-3 INTRON sano
X	3383784	X_3383784_DEL [dm3] X_3489751_DEL [dm6]	AATATATCCA	A	3.396e^-4	0.831	UTR_3_PRIME CG10803 DOWNSTREAM CG10803 INTRON CR44999	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3L	15469359	3L_15469359_SNP [dm3] 3L_15476259_SNP [dm6]	A	T	3.397e^-4	0.831	INTERGENIC
2L	4055630	2L_4055630_SNP [dm3] 2L_4055630_SNP [dm6]	C	T	3.398e^-4	0.831	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3R	10630278	3R_10630278_INS [dm3] 3R_14804556_INS [dm6]	A	AGAAAGGTTCTCTA...	3.400e^-4	0.831	UTR_3_PRIME btsz DOWNSTREAM CG14857
3L	3278364	3L_3278364_SNP [dm3] 3L_3278364_SNP [dm6]	T	C	3.401e^-4	0.831	INTERGENIC
2L	7022199	2L_7022199_SNP [dm3] 2L_7022199_SNP [dm6]	T	C	3.402e^-4	0.831	SYNONYMOUS_CODING Pcp INTRON ade3
3L	17941476	3L_17941476_DEL [dm3] 3L_17948376_DEL [dm6]	GGGGG	G	3.407e^-4	0.831	UPSTREAM CR45393 INTERGENIC
3L	17464088	3L_17464088_SNP [dm3] 3L_17470988_SNP [dm6]	T	A	3.408e^-4	0.831	INTRON CG7589
2L	114004	2L_114004_SNP [dm3] 2L_114004_SNP [dm6]	T	A	3.412e^-4	0.831	UTR_3_PRIME Sam-S UPSTREAM CG11455
3L	880454	3L_880454_SNP [dm3] 3L_880454_SNP [dm6]	C	G	3.418e^-4	0.831	SYNONYMOUS_CODING CG13907 INTRON CG32479	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	20484498	3L_20484498_SNP [dm3] 3L_20491398_SNP [dm6]	C	A	3.421e^-4	0.831	UPSTREAM CG6020 INTRON ZnT77C
X	14513790	X_14513790_SNP [dm3] X_14619757_SNP [dm6]	A	C	3.423e^-4	0.831	INTRON NetA
2R	19455959	2R_19455959_SNP [dm3] 2R_23568436_SNP [dm6]	A	T	3.430e^-4	0.831	INTRON apt
2R	15770104	2R_15770104_SNP [dm3] 2R_19882599_SNP [dm6]	A	G	3.432e^-4	0.831	INTERGENIC
X	20878353	X_20878353_SNP [dm3] X_21007326_SNP [dm6]	C	T	3.437e^-4	0.831	INTERGENIC
3L	5530040	3L_5530040_SNP [dm3] 3L_5536940_SNP [dm6]	C	T	3.442e^-4	0.831	INTERGENIC
3L	5951762	3L_5951762_SNP [dm3] 3L_5958662_SNP [dm6]	G	A	3.443e^-4	0.831	INTERGENIC
2L	6114344	2L_6114344_SNP [dm3] 2L_6114344_SNP [dm6]	C	T	3.445e^-4	0.831	INTRON stai
3R	10949139	3R_10949139_SNP [dm3] 3R_15123417_SNP [dm6]	G	A	3.454e^-4	0.831	INTRON CG42788
3L	2725128	3L_2725128_SNP [dm3] 3L_2725128_SNP [dm6]	A	C	3.457e^-4	0.831	INTRON Mrtf
2L	18576654	2L_18576654_SNP [dm3] 2L_18576654_SNP [dm6]	G	A	3.463e^-4	0.831	INTRON Pde11
2L	5140412	2L_5140412_SNP [dm3] 2L_5140412_SNP [dm6]	T	C	3.466e^-4	0.831	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18068108	3L_18068108_SNP [dm3] 3L_18075008_SNP [dm6]	C	A	3.473e^-4	0.831	EXON CR45391
3L	18280893	3L_18280893_SNP [dm3] 3L_18287793_SNP [dm6]	T	C	3.485e^-4	0.831	INTERGENIC
3L	1524818	3L_1524818_SNP [dm3] 3L_1524818_SNP [dm6]	G	T	3.504e^-4	0.831	INTRON CG12090
3R	8560940	3R_8560940_SNP [dm3] 3R_12735218_SNP [dm6]	A	T	3.509e^-4	0.831	INTERGENIC
3R	8560948	3R_8560948_SNP [dm3] 3R_12735226_SNP [dm6]	A	T	3.509e^-4	0.831	INTERGENIC
2L	3194191	2L_3194191_SNP [dm3] 2L_3194191_SNP [dm6]	G	C	3.513e^-4	0.831	INTRON CG34393
3R	18436420	3R_18436420_SNP [dm3] 3R_22610698_SNP [dm6]	A	G	3.521e^-4	0.831	UTR_3_PRIME CG13843 INTRON CG31156	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16933532	2L_16933532_SNP [dm3] 2L_16933532_SNP [dm6]	G	A	3.529e^-4	0.831	INTERGENIC
3L	7826377	3L_7826377_SNP [dm3] 3L_7833277_SNP [dm6]	T	A	3.532e^-4	0.831	UPSTREAM Pdp1 INTRON Pdp1
3L	2725010	3L_2725010_SNP [dm3] 3L_2725010_SNP [dm6]	G	T	3.537e^-4	0.831	INTRON Mrtf
3R	27128815	3R_27128815_SNP [dm3] 3R_31303093_SNP [dm6]	T	A	3.540e^-4	0.831	SYNONYMOUS_CODING CG11340
3R	17176577	3R_17176577_SNP [dm3] 3R_21350855_SNP [dm6]	A	C	3.547e^-4	0.831	UTR_3_PRIME mod_mdg4_ DOWNSTREAM mod_mdg4_	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	23279822	3R_23279822_SNP [dm3] 3R_27454100_SNP [dm6]	G	T	3.552e^-4	0.831	INTERGENIC
2R	11189394	2R_11189394_SNP [dm3] 2R_15301889_SNP [dm6]	A	C	3.554e^-4	0.831	INTRON Trpm	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	16494524	2L_16494524_SNP [dm3] 2L_16494524_SNP [dm6]	T	G	3.559e^-4	0.831	INTRON Tpr2	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	6711687	3R_6711687_SNP [dm3] 3R_10885965_SNP [dm6]	C	T	3.564e^-4	0.831	UTR_5_PRIME Leash UPSTREAM CG14696	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	6708689	3R_6708689_SNP [dm3] 3R_10882967_SNP [dm6]	G	A	3.566e^-4	0.831	NON_SYNONYMOUS_CODING CG14696 UPSTREAM Tpc1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	1456087	3L_1456087_SNP [dm3] 3L_1456087_SNP [dm6]	A	G	3.577e^-4	0.831	INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	11311783	2L_11311783_SNP [dm3] 2L_11311783_SNP [dm6]	C	T	3.577e^-4	0.831	INTERGENIC
2L	2357993	2L_2357993_DEL [dm3] 2L_2357993_DEL [dm6]	ACA	A	3.578e^-4	0.831	UTR_3_PRIME eys UPSTREAM CG9967	TF binding site mE1_TFBS_HSA
2R	15014270	2R_15014270_SNP [dm3] 2R_19126765_SNP [dm6]	G	A	3.584e^-4	0.831	UPSTREAM CG15117 INTRON CG15117
3L	21899636	3L_21899636_SNP [dm3] 3L_21906536_SNP [dm6]	A	G	3.585e^-4	0.831	INTRON mub	TF binding site mE1_TFBS_HSA
3L	11845750	3L_11845750_SNP [dm3] 3L_11852650_SNP [dm6]	G	A	3.588e^-4	0.831	INTRON CG44837	TF binding site mE1_TFBS_chinmo
2L	12283056	2L_12283056_SNP [dm3] 2L_12283056_SNP [dm6]	G	T	3.590e^-4	0.831	INTRON aret
3R	23275457	3R_23275457_SNP [dm3] 3R_27449735_SNP [dm6]	A	T	3.592e^-4	0.831	INTERGENIC
3L	14273342	3L_14273342_SNP [dm3] 3L_14280242_SNP [dm6]	C	T	3.600e^-4	0.831	INTRON fz
3R	9297603	3R_9297603_SNP [dm3] 3R_13471881_SNP [dm6]	C	A	3.604e^-4	0.831	INTERGENIC
3L	17152122	3L_17152122_SNP [dm3] 3L_17159022_SNP [dm6]	C	A	3.610e^-4	0.831	INTRON Rbp6
3R	10627698	3R_10627698_SNP [dm3] 3R_14801976_SNP [dm6]	A	G	3.615e^-4	0.831	NON_SYNONYMOUS_CODING CG14857 DOWNSTREAM CG14856	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25848192	3R_25848192_SNP [dm3] 3R_30022470_SNP [dm6]	T	A	3.618e^-4	0.831	SYNONYMOUS_CODING RpS28a UPSTREAM Axn & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	15489383	X_15489383_SNP [dm3] X_15595350_SNP [dm6]	T	C	3.620e^-4	0.831	INTERGENIC
2R	19982922	2R_19982922_SNP [dm3] 2R_24095399_SNP [dm6]	T	C	3.625e^-4	0.831	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18433239	2R_18433239_SNP [dm3] 2R_22545734_SNP [dm6]	G	C	3.626e^-4	0.831	INTRON px	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11845758	3L_11845758_INS [dm3] 3L_11852658_INS [dm6]	G	GCG	3.632e^-4	0.831	INTRON CG44837	TF binding site mE1_TFBS_chinmo
2L	10050377	2L_10050377_SNP [dm3] 2L_10050377_SNP [dm6]	C	A	3.633e^-4	0.831	SYNONYMOUS_CODING CG33301 UPSTREAM CR44874	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18188847	3L_18188847_SNP [dm3] 3L_18195747_SNP [dm6]	A	T	3.637e^-4	0.831	UPSTREAM CR45234 INTERGENIC
3R	14985837	3R_14985837_INS [dm3] 3R_19160115_INS [dm6]	T	TT	3.638e^-4	0.831	UTR_3_PRIME nos & 1 other UPSTREAM CG11779
3R	5565507	3R_5565507_SNP [dm3] 3R_9739785_SNP [dm6]	T	G	3.645e^-4	0.831	UTR_5_PRIME CG12950	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_zfh1
3L	16784661	3L_16784661_SNP [dm3] 3L_16791561_SNP [dm6]	A	C	3.648e^-4	0.831	INTRON CG9674
2R	11773496	2R_11773496_SNP [dm3] 2R_15885991_SNP [dm6]	A	G	3.656e^-4	0.831	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	21800941	3R_21800941_SNP [dm3] 3R_25975219_SNP [dm6]	T	C	3.659e^-4	0.831	INTRON CG42261
2R	1092302	2R_1092302_SNP [dm3] 2R_5204797_SNP [dm6]	C	T	3.664e^-4	0.831	INTRON Nipped-A
3R	10681475	3R_10681475_SNP [dm3] 3R_14855753_SNP [dm6]	G	A	3.665e^-4	0.831	INTRON btsz
X	13876909	X_13876909_SNP [dm3] X_13982876_SNP [dm6]	A	G	3.665e^-4	0.831	INTRON mamo
2L	5190882	2L_5190882_SNP [dm3] 2L_5190882_SNP [dm6]	A	G	3.666e^-4	0.831	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	16498670	3R_16498670_SNP [dm3] 3R_20672948_SNP [dm6]	C	T	3.671e^-4	0.831	DOWNSTREAM Cpr92F INTERGENIC
2R	12271742	2R_12271742_SNP [dm3] 2R_16384237_SNP [dm6]	G	A	3.675e^-4	0.831	UTR_3_PRIME CG43187	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	9525334	X_9525334_SNP [dm3] X_9631301_SNP [dm6]	A	G	3.679e^-4	0.831	INTRON l_1_G0232
2L	10488378	2L_10488378_DEL [dm3] 2L_10488378_DEL [dm6]	CTC	C	3.709e^-4	0.836	UPSTREAM CG6144 INTRON CG7456	TF binding site mE1_TFBS_Ubx
3L	18188619	3L_18188619_SNP [dm3] 3L_18195519_SNP [dm6]	G	A	3.709e^-4	0.836	UPSTREAM CR45234 INTERGENIC
3L	11018292	3L_11018292_SNP [dm3] 3L_11025192_SNP [dm6]	A	T	3.727e^-4	0.836	UPSTREAM CG32079 DOWNSTREAM Fad2 INTERGENIC
X	13983866	X_13983866_SNP [dm3] X_14089833_SNP [dm6]	G	T	3.735e^-4	0.836	INTERGENIC
2R	1115324	2R_1115324_SNP [dm3] 2R_5227819_SNP [dm6]	T	C	3.740e^-4	0.836	INTRON Nipped-A	transposable element FlyBase
2L	3784596	2L_3784596_SNP [dm3] 2L_3784596_SNP [dm6]	T	C	3.740e^-4	0.836	UPSTREAM CG31960 DOWNSTREAM bowl INTERGENIC
3R	19548401	3R_19548401_SNP [dm3] 3R_23722679_SNP [dm6]	G	T	3.747e^-4	0.836	UPSTREAM CG10365 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	7987535	X_7987535_SNP [dm3] X_8093502_SNP [dm6]	C	G	3.747e^-4	0.836	DOWNSTREAM CG2258 INTRON Ubc-E2H	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	9754507	2R_9754507_SNP [dm3] 2R_13867002_SNP [dm6]	A	G	3.756e^-4	0.836	INTRON shot
2R	9754517	2R_9754517_SNP [dm3] 2R_13867012_SNP [dm6]	G	T	3.756e^-4	0.836	INTRON shot
3R	3405861	3R_3405861_SNP [dm3] 3R_7580139_SNP [dm6]	C	A	3.756e^-4	0.836	INTRON CG34127
X	18899696	X_18899696_SNP [dm3] X_19005663_SNP [dm6]	G	C	3.764e^-4	0.836	INTRON CG43759
3R	4080595	3R_4080595_SNP [dm3] 3R_8254873_SNP [dm6]	T	C	3.773e^-4	0.836	INTRON mtg
2L	4267816	2L_4267816_SNP [dm3] 2L_4267816_SNP [dm6]	C	T	3.782e^-4	0.836	INTERGENIC
3L	19562629	3L_19562629_SNP [dm3] 3L_19569529_SNP [dm6]	A	T	3.789e^-4	0.836	INTRON Shal	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	15944839	2R_15944839_SNP [dm3] 2R_20057334_SNP [dm6]	T	A	3.791e^-4	0.836	UPSTREAM CR44631 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19455945	2R_19455945_SNP [dm3] 2R_23568422_SNP [dm6]	A	G	3.792e^-4	0.836	INTRON apt
2R	15319605	2R_15319605_SNP [dm3] 2R_19432100_SNP [dm6]	A	G	3.803e^-4	0.836	SYNONYMOUS_CODING Fak
X	20536912	X_20536912_SNP [dm3] X_20665885_SNP [dm6]	T	C	3.813e^-4	0.836	INTRON CG1835	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	8935801	2L_8935801_DEL [dm3] 2L_8935801_DEL [dm6]	AGAAA	A	3.816e^-4	0.836	INTRON Tsp29Fa
3L	5274101	3L_5274101_SNP [dm3] 3L_5281001_SNP [dm6]	G	A	3.816e^-4	0.836	INTERGENIC
3R	4001681	3R_4001681_DEL [dm3] 3R_8175959_DEL [dm6]	TGTAACGGCAGCCCACTGTG...	T	3.817e^-4	0.836	INTRON grn	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_sens
3L	11179099	3L_11179099_SNP [dm3] 3L_11185999_SNP [dm6]	C	G	3.818e^-4	0.836	INTRON GlcAT-P
X	16928842	X_16928842_SNP [dm3] X_17034809_SNP [dm6]	G	A	3.831e^-4	0.836	INTRON CG45002
X	14331744	X_14331744_SNP [dm3] X_14437711_SNP [dm6]	G	A	3.833e^-4	0.836	INTRON dpr8
3R	10617380	3R_10617380_SNP [dm3] 3R_14791658_SNP [dm6]	T	C	3.834e^-4	0.836	UTR_3_PRIME jvl INTRON jvl
3L	22267042	3L_22267042_SNP [dm3] 3L_22273942_SNP [dm6]	C	T	3.839e^-4	0.836	UPSTREAM srpk79D DOWNSTREAM Csp INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	17612277	3R_17612277_SNP [dm3] 3R_21786555_SNP [dm6]	G	C	3.846e^-4	0.836	UTR_3_PRIME CASK UPSTREAM CRG
2L	13927199	2L_13927199_SNP [dm3] 2L_13927199_SNP [dm6]	T	G	3.852e^-4	0.836	INTRON Ance-3
3R	5144312	3R_5144312_SNP [dm3] 3R_9318590_SNP [dm6]	A	G	3.855e^-4	0.836	INTRON CG8861
X	18860660	X_18860660_SNP [dm3] X_18966627_SNP [dm6]	C	A	3.855e^-4	0.836	INTRON CG43759	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	14985798	3R_14985798_DEL [dm3] 3R_19160076_DEL [dm6]	TT	T	3.863e^-4	0.836	UTR_3_PRIME nos UPSTREAM CG11779 DOWNSTREAM CG42358
X	16838604	X_16838604_SNP [dm3] X_16944571_SNP [dm6]	C	T	3.867e^-4	0.836	INTRON RhoGAP15B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	14742422	3R_14742422_INS [dm3] 3R_18916700_INS [dm6]	T	TCCATTGT	3.868e^-4	0.836	INTRON Xrp1	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	19429488	3L_19429488_SNP [dm3] 3L_19436388_SNP [dm6]	C	T	3.872e^-4	0.836	INTERGENIC
3R	27066488	3R_27066488_SNP [dm3] 3R_31240766_SNP [dm6]	T	A	3.876e^-4	0.836	INTRON qless
3R	20912020	3R_20912020_SNP [dm3] 3R_25086298_SNP [dm6]	T	A	3.880e^-4	0.836	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3000611	3L_3000611_SNP [dm3] 3L_3000611_SNP [dm6]	C	G	3.882e^-4	0.836	INTERGENIC
3L	13204182	3L_13204182_SNP [dm3] 3L_13211082_SNP [dm6]	G	C	3.887e^-4	0.836	UPSTREAM tRNA:CR32129 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	115359	2L_115359_SNP [dm3] 2L_115359_SNP [dm6]	A	G	3.889e^-4	0.836	DOWNSTREAM CG13694 & 1 other INTRON CG11455	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	15877278	2R_15877278_SNP [dm3] 2R_19989773_SNP [dm6]	T	G	3.890e^-4	0.836	INTERGENIC
X	20876982	X_20876982_SNP [dm3] X_21005955_SNP [dm6]	C	T	3.893e^-4	0.836	INTERGENIC
3R	19152988	3R_19152988_SNP [dm3] 3R_23327266_SNP [dm6]	A	T	3.898e^-4	0.836	INTRON pnt
3R	13324855	3R_13324855_SNP [dm3] 3R_17499133_SNP [dm6]	T	A	3.901e^-4	0.836	INTRON Dscam3
2L	3784647	2L_3784647_SNP [dm3] 2L_3784647_SNP [dm6]	C	T	3.905e^-4	0.836	UPSTREAM CG31960 DOWNSTREAM bowl INTERGENIC
X	12189767	X_12189767_SNP [dm3] X_12295734_SNP [dm6]	C	T	3.921e^-4	0.837	INTRON Ten-a
3L	5210902	3L_5210902_SNP [dm3] 3L_5217802_SNP [dm6]	A	C	3.921e^-4	0.837	INTRON shep
2R	12357577	2R_12357577_SNP [dm3] 2R_16470072_SNP [dm6]	G	A	3.925e^-4	0.837	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	6089677	3L_6089677_SNP [dm3] 3L_6096577_SNP [dm6]	G	T	3.929e^-4	0.837	DOWNSTREAM loj INTERGENIC
2L	9098525	2L_9098525_SNP [dm3] 2L_9098525_SNP [dm6]	T	G	3.935e^-4	0.837	UPSTREAM CR44482 DOWNSTREAM CG31609 INTERGENIC
X	5544486	X_5544486_SNP [dm3] X_5650453_SNP [dm6]	C	G	3.939e^-4	0.837	DOWNSTREAM CG42265 INTERGENIC
2L	7501547	2L_7501547_SNP [dm3] 2L_7501547_SNP [dm6]	G	C	3.942e^-4	0.837	INTRON RapGAP1	TF binding site mE1_TFBS_cad
3R	25587716	3R_25587716_SNP [dm3] 3R_29761994_SNP [dm6]	A	T	3.951e^-4	0.837	INTERGENIC
2L	18366104	2L_18366104_SNP [dm3] 2L_18366104_SNP [dm6]	T	C	3.987e^-4	0.837	INTRON Fas3
3R	7225556	3R_7225556_INS [dm3] 3R_11399834_INS [dm6]	A	AA	3.989e^-4	0.837	UTR_3_PRIME pros
3R	21021383	3R_21021383_SNP [dm3] 3R_25195661_SNP [dm6]	T	C	3.997e^-4	0.837	SYNONYMOUS_CODING CG13653	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	123820	2L_123820_SNP [dm3] 2L_123820_SNP [dm6]	A	C	3.999e^-4	0.837	INTRON CG11455 & 1 other EXON CR44969	TF binding site BDTNP1_TFBS_da
3L	6082290	3L_6082290_SNP [dm3] 3L_6089190_SNP [dm6]	A	G	4.008e^-4	0.837	INTRON CG13293	TF binding site mE1_TFBS_cad
2L	5383177	2L_5383177_SNP [dm3] 2L_5383177_SNP [dm6]	G	T	4.024e^-4	0.837	INTERGENIC
3L	17189154	3L_17189154_SNP [dm3] 3L_17196054_SNP [dm6]	G	A	4.028e^-4	0.837	INTRON Rbp6	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	9636787	3L_9636787_SNP [dm3] 3L_9643687_SNP [dm6]	G	T	4.040e^-4	0.837	UPSTREAM CG33696 INTRON fry
X	20813669	X_20813669_DEL [dm3] X_20942642_DEL [dm6]	TA	T	4.044e^-4	0.837	INTERGENIC
3R	21622334	3R_21622334_SNP [dm3] 3R_25796612_SNP [dm6]	T	A	4.045e^-4	0.837	EXON CR43847	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	19637757	2R_19637757_SNP [dm3] 2R_23750234_SNP [dm6]	G	C	4.045e^-4	0.837	UPSTREAM CG12491 & 1 other INTERGENIC
3L	12606358	3L_12606358_SNP [dm3] 3L_12613258_SNP [dm6]	G	T	4.046e^-4	0.837	INTRON caup	silencer mE1_HDAC_PRE
3L	12606362	3L_12606362_SNP [dm3] 3L_12613262_SNP [dm6]	G	A	4.046e^-4	0.837	INTRON caup	silencer mE1_HDAC_PRE
3L	12606366	3L_12606366_SNP [dm3] 3L_12613266_SNP [dm6]	T	G	4.046e^-4	0.837	INTRON caup	silencer mE1_HDAC_PRE
X	20813583	X_20813583_SNP [dm3] X_20942556_SNP [dm6]	T	A	4.047e^-4	0.837	INTERGENIC
3R	12951533	3R_12951533_SNP [dm3] 3R_17125811_SNP [dm6]	C	A	4.049e^-4	0.837	UPSTREAM cher DOWNSTREAM CG17477 INTERGENIC	TF binding site mE1_TFBS_inv
3L	10095490	3L_10095490_DEL [dm3] 3L_10102390_DEL [dm6]	CCTGC	C	4.077e^-4	0.837	INTRON dpr6
3L	6618873	3L_6618873_SNP [dm3] 3L_6625773_SNP [dm6]	A	C	4.098e^-4	0.837	INTRON GluRIA
3L	4708304	3L_4708304_SNP [dm3] 3L_4708304_SNP [dm6]	T	C	4.100e^-4	0.837	DOWNSTREAM CG13712 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9455772	2R_9455772_SNP [dm3] 2R_13568267_SNP [dm6]	C	A	4.101e^-4	0.837	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
2L	11357203	2L_11357203_INS [dm3] 2L_11357203_INS [dm6]	C	TGGG	4.108e^-4	0.837	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
3R	27133738	3R_27133738_SNP [dm3] 3R_31308016_SNP [dm6]	T	A	4.109e^-4	0.837	INTERGENIC
X	15634701	X_15634701_INS [dm3] X_15740668_INS [dm6]	A	TGG	4.110e^-4	0.837	DOWNSTREAM CG8206 & 1 other INTERGENIC	TF binding site mE1_TFBS_cnc
X	9700758	X_9700758_SNP [dm3] X_9806725_SNP [dm6]	G	T	4.127e^-4	0.837	INTRON CG32698
3R	19048590	3R_19048590_INS [dm3] 3R_23222868_INS [dm6]	T	TTCCAGAGA	4.134e^-4	0.837	FRAME_SHIFT cnc UPSTREAM cnc
3R	21754522	3R_21754522_SNP [dm3] 3R_25928800_SNP [dm6]	C	T	4.139e^-4	0.837	INTRON CCAP-R
3R	14709881	3R_14709881_INS [dm3] 3R_18884159_INS [dm6]	G	GG	4.145e^-4	0.837	INTERGENIC
3L	13075893	3L_13075893_SNP [dm3] 3L_13082793_SNP [dm6]	C	T	4.146e^-4	0.837	UPSTREAM CR43652 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4239625	2L_4239625_SNP [dm3] 2L_4239625_SNP [dm6]	C	G	4.152e^-4	0.837	DOWNSTREAM CR45720 INTERGENIC
3R	23301560	3R_23301560_SNP [dm3] 3R_27475838_SNP [dm6]	G	A	4.158e^-4	0.837	INTERGENIC
3L	870504	3L_870504_SNP [dm3] 3L_870504_SNP [dm6]	T	C	4.160e^-4	0.837	SYNONYMOUS_CODING CG12502
2L	15170761	2L_15170761_SNP [dm3] 2L_15170761_SNP [dm6]	C	G	4.163e^-4	0.837	INTRON CG4168
2R	10647300	2R_10647300_SNP [dm3] 2R_14759795_SNP [dm6]	T	G	4.164e^-4	0.837	UTR_3_PRIME Spred UPSTREAM CG12857
3L	15348277	3L_15348277_SNP [dm3] 3L_15355177_SNP [dm6]	G	A	4.166e^-4	0.837	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23280538	3R_23280538_SNP [dm3] 3R_27454816_SNP [dm6]	G	A	4.167e^-4	0.837	INTERGENIC
2L	11310910	2L_11310910_SNP [dm3] 2L_11310910_SNP [dm6]	C	T	4.171e^-4	0.837	INTERGENIC
3R	18323876	3R_18323876_SNP [dm3] 3R_22498154_SNP [dm6]	G	A	4.175e^-4	0.837	INTRON Octbeta1R
X	9524660	X_9524660_SNP [dm3] X_9630627_SNP [dm6]	T	C	4.180e^-4	0.837	NON_SYNONYMOUS_CODING l_1_G0232	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18570941	3L_18570941_SNP [dm3] 3L_18577841_SNP [dm6]	C	T	4.191e^-4	0.837	INTERGENIC
3R	27130859	3R_27130859_SNP [dm3] 3R_31305137_SNP [dm6]	C	T	4.198e^-4	0.837	UTR_5_PRIME CG11340
3R	27130860	3R_27130860_SNP [dm3] 3R_31305138_SNP [dm6]	A	T	4.198e^-4	0.837	UTR_5_PRIME CG11340
X	17925844	X_17925844_SNP [dm3] X_18031811_SNP [dm6]	C	A	4.201e^-4	0.837	INTRON Sh
X	5256390	X_5256390_SNP [dm3] X_5362357_SNP [dm6]	A	G	4.211e^-4	0.837	INTRON SK
3R	8563462	3R_8563462_SNP [dm3] 3R_12737740_SNP [dm6]	C	T	4.213e^-4	0.837	INTERGENIC
2L	10050065	2L_10050065_SNP [dm3] 2L_10050065_SNP [dm6]	C	T	4.216e^-4	0.837	SYNONYMOUS_CODING CG33301	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	12493888	3R_12493888_SNP [dm3] 3R_16668166_SNP [dm6]	T	G	4.221e^-4	0.837	INTRON Ubx	TF binding site mE1_TFBS_HSA
3L	4924944	3L_4924944_SNP [dm3] 3L_4924944_SNP [dm6]	T	A	4.222e^-4	0.837	INTERGENIC
X	12190056	X_12190056_SNP [dm3] X_12296023_SNP [dm6]	G	A	4.228e^-4	0.837	INTRON Ten-a
3R	22986643	3R_22986643_SNP [dm3] 3R_27160921_SNP [dm6]	G	A	4.229e^-4	0.837	UPSTREAM CG5909 INTERGENIC
X	2867991	X_2867991_SNP [dm3] X_2973958_SNP [dm6]	C	T	4.237e^-4	0.837	UPSTREAM rst INTRON kirre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19045207	2R_19045207_SNP [dm3] 2R_23157684_SNP [dm6]	T	C	4.237e^-4	0.837	UTR_3_PRIME CG13545 INTRON CG9899
3R	10550605	3R_10550605_INS [dm3] 3R_14724883_INS [dm6]	A	AA	4.245e^-4	0.837	UTR_3_PRIME CG7530 UPSTREAM kibra	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
2R	19045215	2R_19045215_SNP [dm3] 2R_23157692_SNP [dm6]	C	A	4.247e^-4	0.837	UTR_3_PRIME CG13545 INTRON CG9899
2R	1140812	2R_1140812_SNP [dm3] 2R_5253307_SNP [dm6]	A	T	4.247e^-4	0.837	UPSTREAM CR41443 INTERGENIC
3L	6081824	3L_6081824_SNP [dm3] 3L_6088724_SNP [dm6]	T	G	4.248e^-4	0.837	SYNONYMOUS_CODING CG13293	TF binding site mE1_TFBS_cad
3R	6329640	3R_6329640_SNP [dm3] 3R_10503918_SNP [dm6]	T	A	4.250e^-4	0.837	INTERGENIC
X	2878261	X_2878261_SNP [dm3] X_2984228_SNP [dm6]	A	T	4.254e^-4	0.837	INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8563460	3R_8563460_SNP [dm3] 3R_12737738_SNP [dm6]	T	G	4.260e^-4	0.837	INTERGENIC
3R	10962912	3R_10962912_SNP [dm3] 3R_15137190_SNP [dm6]	T	C	4.262e^-4	0.837	NON_SYNONYMOUS_CODING CG3984 UPSTREAM CG6912 EXON CR45600	TF binding site mE1_TFBS_cad
X	3476250	X_3476250_SNP [dm3] X_3582217_SNP [dm6]	A	T	4.265e^-4	0.837	INTRON AstA-R1
3R	26288323	3R_26288323_SNP [dm3] 3R_30462601_SNP [dm6]	T	C	4.268e^-4	0.837	UTR_5_PRIME CDase INTRON CDase
X	9439632	X_9439632_SNP [dm3] X_9545599_SNP [dm6]	T	C	4.269e^-4	0.837	INTRON CG32700
3L	10570202	3L_10570202_INS [dm3] 3L_10577102_INS [dm6]	T	CAAAAA	4.301e^-4	0.837	INTRON A2bp1
3L	8037535	3L_8037535_SNP [dm3] 3L_8044435_SNP [dm6]	T	A	4.305e^-4	0.837	INTRON nmo
3R	26020587	3R_26020587_SNP [dm3] 3R_30194865_SNP [dm6]	G	C	4.305e^-4	0.837	UTR_3_PRIME CG15531
3R	21755233	3R_21755233_SNP [dm3] 3R_25929511_SNP [dm6]	G	T	4.314e^-4	0.837	INTRON CCAP-R
3L	10391916	3L_10391916_SNP [dm3] 3L_10398816_SNP [dm6]	C	G	4.316e^-4	0.837	INTERGENIC
3L	17329418	3L_17329418_SNP [dm3] 3L_17336318_SNP [dm6]	C	G	4.327e^-4	0.837	DOWNSTREAM CG6479 EXON CR44564
3L	18068055	3L_18068055_SNP [dm3] 3L_18074955_SNP [dm6]	G	C	4.328e^-4	0.837	EXON CR45391
3R	19048559	3R_19048559_SNP [dm3] 3R_23222837_SNP [dm6]	T	C	4.338e^-4	0.837	NON_SYNONYMOUS_CODING cnc UPSTREAM cnc
3L	18652238	3L_18652238_SNP [dm3] 3L_18659138_SNP [dm6]	G	T	4.341e^-4	0.837	INTRON MYPT-75D
3L	18652241	3L_18652241_SNP [dm3] 3L_18659141_SNP [dm6]	T	C	4.341e^-4	0.837	INTRON MYPT-75D
3L	18652242	3L_18652242_SNP [dm3] 3L_18659142_SNP [dm6]	T	A	4.341e^-4	0.837	INTRON MYPT-75D
3L	18652244	3L_18652244_SNP [dm3] 3L_18659144_SNP [dm6]	G	T	4.341e^-4	0.837	INTRON MYPT-75D
X	5256381	X_5256381_SNP [dm3] X_5362348_SNP [dm6]	T	C	4.342e^-4	0.837	INTRON SK
3L	9644952	3L_9644952_SNP [dm3] 3L_9651852_SNP [dm6]	G	A	4.346e^-4	0.837	INTRON fry & 1 other
3R	27102814	3R_27102814_SNP [dm3] 3R_31277092_SNP [dm6]	T	G	4.348e^-4	0.837	INTERGENIC
3L	6994085	3L_6994085_SNP [dm3] 3L_7000985_SNP [dm6]	A	C	4.350e^-4	0.837	INTRON Mp
3L	5334874	3L_5334874_INS [dm3] 3L_5341774_INS [dm6]	T	TA	4.351e^-4	0.837	UPSTREAM tRNA:S7:64D INTERGENIC
3R	26721884	3R_26721884_SNP [dm3] 3R_30896162_SNP [dm6]	G	A	4.352e^-4	0.837	INTRON Cyp4c3
3R	26364020	3R_26364020_SNP [dm3] 3R_30538298_SNP [dm6]	A	T	4.354e^-4	0.837	UPSTREAM tmod INTRON tmod
3L	11334904	3L_11334904_SNP [dm3] 3L_11341804_SNP [dm6]	T	G	4.358e^-4	0.837	UPSTREAM CR45250 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	16308174	X_16308174_SNP [dm3] X_16414141_SNP [dm6]	A	G	4.367e^-4	0.837	SYNONYMOUS_CODING CG4301 UPSTREAM Traf-like
3L	871093	3L_871093_SNP [dm3] 3L_871093_SNP [dm6]	A	T	4.369e^-4	0.837	UTR_3_PRIME CG12502 UPSTREAM CG32479 DOWNSTREAM CG12502	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	12189416	X_12189416_SNP [dm3] X_12295383_SNP [dm6]	T	G	4.369e^-4	0.837	INTRON Ten-a
3L	6202659	3L_6202659_SNP [dm3] 3L_6209559_SNP [dm6]	G	A	4.378e^-4	0.837	SYNONYMOUS_CODING LanA	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	19229716	3L_19229716_SNP [dm3] 3L_19236616_SNP [dm6]	A	G	4.389e^-4	0.837	SYNONYMOUS_CODING CG33647
2R	6281664	2R_6281664_SNP [dm3] 2R_10394159_SNP [dm6]	G	C	4.396e^-4	0.837	INTRON CG42732	TF binding site BDTNP1_TFBS_twi
2L	11311633	2L_11311633_SNP [dm3] 2L_11311633_SNP [dm6]	A	G	4.397e^-4	0.837	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15176750	3L_15176750_SNP [dm3] 3L_15183650_SNP [dm6]	C	T	4.397e^-4	0.837	INTERGENIC
3R	27137789	3R_27137789_SNP [dm3] 3R_31312067_SNP [dm6]	T	A	4.411e^-4	0.837	INTRON CG34347
3L	19629944	3L_19629944_SNP [dm3] 3L_19636844_SNP [dm6]	T	A	4.413e^-4	0.837	DOWNSTREAM CG8786 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2R	12271684	2R_12271684_SNP [dm3] 2R_16384179_SNP [dm6]	T	C	4.414e^-4	0.837	UTR_3_PRIME CG43187	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19074356	2R_19074356_SNP [dm3] 2R_23186833_SNP [dm6]	C	A	4.422e^-4	0.837	INTRON CG34371	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	8560949	3R_8560949_SNP [dm3] 3R_12735227_SNP [dm6]	A	C	4.423e^-4	0.837	INTERGENIC
X	5367776	X_5367776_DEL [dm3] X_5473743_DEL [dm6]	AAA	A	4.428e^-4	0.837	INTRON SPR
X	16148028	X_16148028_SNP [dm3] X_16253995_SNP [dm6]	T	A	4.428e^-4	0.837	UPSTREAM snRNA:U2:14B DOWNSTREAM snRNA:U5:14B INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	12188422	X_12188422_SNP [dm3] X_12294389_SNP [dm6]	G	A	4.440e^-4	0.837	INTRON Ten-a
3R	6726171	3R_6726171_SNP [dm3] 3R_10900449_SNP [dm6]	G	A	4.451e^-4	0.837	INTERGENIC
X	16786394	X_16786394_SNP [dm3] X_16892361_SNP [dm6]	G	C	4.455e^-4	0.837	INTERGENIC
X	16786395	X_16786395_SNP [dm3] X_16892362_SNP [dm6]	A	C	4.455e^-4	0.837	INTERGENIC
3L	1201377	3L_1201377_SNP [dm3] 3L_1201377_SNP [dm6]	A	G	4.463e^-4	0.837	DOWNSTREAM CG32335 INTRON mwh
3L	13234761	3L_13234761_SNP [dm3] 3L_13241661_SNP [dm6]	C	T	4.468e^-4	0.837	INTRON caps
3R	27069105	3R_27069105_SNP [dm3] 3R_31243383_SNP [dm6]	G	T	4.470e^-4	0.837	INTRON qless
X	18840882	X_18840882_SNP [dm3] X_18946849_SNP [dm6]	T	C	4.471e^-4	0.837	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	11582717	2R_11582717_SNP [dm3] 2R_15695212_SNP [dm6]	A	G	4.474e^-4	0.837	UTR_3_PRIME CG33460 UPSTREAM CG33461
2R	17687171	2R_17687171_SNP [dm3] 2R_21799666_SNP [dm6]	C	T	4.475e^-4	0.837	SYNONYMOUS_CODING CG4386 UPSTREAM CG18735
3R	10550436	3R_10550436_SNP [dm3] 3R_14724714_SNP [dm6]	A	G	4.481e^-4	0.837	UPSTREAM kibra DOWNSTREAM CG7530 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2R	19135287	2R_19135287_SNP [dm3] 2R_23247764_SNP [dm6]	A	T	4.482e^-4	0.837	INTRON RpL22-like
2L	4528473	2L_4528473_SNP [dm3] 2L_4528473_SNP [dm6]	T	G	4.498e^-4	0.837	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11338682	3L_11338682_SNP [dm3] 3L_11345582_SNP [dm6]	T	C	4.503e^-4	0.837	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	9310345	2R_9310345_SNP [dm3] 2R_13422840_SNP [dm6]	T	G	4.512e^-4	0.837	DOWNSTREAM CG30060 INTRON CG42321
3L	10424823	3L_10424823_SNP [dm3] 3L_10431723_SNP [dm6]	T	C	4.512e^-4	0.837	SYNONYMOUS_CODING Ir67b DOWNSTREAM Ir67c
3R	4887747	3R_4887747_SNP [dm3] 3R_9062025_SNP [dm6]	C	T	4.518e^-4	0.837	SYNONYMOUS_CODING Kdm2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8874383	3L_8874383_SNP [dm3] 3L_8881283_SNP [dm6]	G	A	4.523e^-4	0.837	INTRON dally
2L	21971382	2L_21971382_SNP [dm3] 2L_21971382_SNP [dm6]	A	T	4.523e^-4	0.837	INTERGENIC
3R	26332034	3R_26332034_SNP [dm3] 3R_30506312_SNP [dm6]	C	T	4.528e^-4	0.837	NON_SYNONYMOUS_CODING CG15539 UTR_5_PRIME CG15539 UPSTREAM PH4alphaSG1 & 1 other
2L	15266816	2L_15266816_SNP [dm3] 2L_15266816_SNP [dm6]	G	A	4.536e^-4	0.837	SYNONYMOUS_CODING Cul3	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	11181949	3L_11181949_SNP [dm3] 3L_11188849_SNP [dm6]	G	C	4.552e^-4	0.837	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15067321	3L_15067321_SNP [dm3] 3L_15074221_SNP [dm6]	G	C	4.555e^-4	0.837	INTRON cp309	TF binding site mE1_TFBS_cad
X	8739620	X_8739620_SNP [dm3] X_8845587_SNP [dm6]	T	A	4.559e^-4	0.837	INTRON CG12075
2L	4204237	2L_4204237_SNP [dm3] 2L_4204237_SNP [dm6]	G	A	4.564e^-4	0.837	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_sens
3R	19871723	3R_19871723_SNP [dm3] 3R_24046001_SNP [dm6]	T	C	4.566e^-4	0.837	UTR_5_PRIME Rox8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	7583308	2R_7583308_SNP [dm3] 2R_11695803_SNP [dm6]	A	G	4.567e^-4	0.837	UTR_3_PRIME CG13197 DOWNSTREAM CG13197
3L	17629002	3L_17629002_SNP [dm3] 3L_17635902_SNP [dm6]	A	T	4.573e^-4	0.837	INTRON CG7497
3L	6089774	3L_6089774_INS [dm3] 3L_6096674_INS [dm6]	T	TTTT	4.578e^-4	0.837	UPSTREAM Ets65A DOWNSTREAM loj INTERGENIC
2L	4207091	2L_4207091_SNP [dm3] 2L_4207091_SNP [dm6]	G	T	4.579e^-4	0.837	NON_SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	9642409	X_9642409_SNP [dm3] X_9748376_SNP [dm6]	G	T	4.584e^-4	0.837	INTRON Sp1
3L	5278046	3L_5278046_SNP [dm3] 3L_5284946_SNP [dm6]	A	G	4.590e^-4	0.837	INTERGENIC
3R	7227202	3R_7227202_SNP [dm3] 3R_11401480_SNP [dm6]	G	A	4.596e^-4	0.837	UTR_3_PRIME pros
2L	5107231	2L_5107231_SNP [dm3] 2L_5107231_SNP [dm6]	G	A	4.604e^-4	0.837	INTRON Msp300	TF binding site mE1_TFBS_Trl
X	7498586	X_7498586_SNP [dm3] X_7604553_SNP [dm6]	A	C	4.605e^-4	0.837	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	16794493	X_16794493_SNP [dm3] X_16900460_SNP [dm6]	A	G	4.607e^-4	0.837	INTERGENIC
2R	12602131	2R_12602131_SNP [dm3] 2R_16714626_SNP [dm6]	G	T	4.612e^-4	0.837	INTRON CG30463
3R	10550621	3R_10550621_SNP [dm3] 3R_14724899_SNP [dm6]	T	A	4.615e^-4	0.837	UTR_3_PRIME CG7530 UPSTREAM kibra	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
3R	10946563	3R_10946563_SNP [dm3] 3R_15120841_SNP [dm6]	T	A	4.616e^-4	0.837	INTRON CG42788
3R	14742931	3R_14742931_SNP [dm3] 3R_18917209_SNP [dm6]	T	A	4.620e^-4	0.837	INTRON Xrp1	TF binding site mE1_TFBS_cnc mE1_TFBS_Trl
3R	14745486	3R_14745486_INS [dm3] 3R_18919764_INS [dm6]	A	ACAAC	4.620e^-4	0.837	UPSTREAM Xrp1 INTRON Xrp1
3R	14746121	3R_14746121_SNP [dm3] 3R_18920399_SNP [dm6]	T	G	4.620e^-4	0.837	START_GAINED Xrp1 UTR_5_PRIME Xrp1 INTRON Xrp1
3R	14757863	3R_14757863_SNP [dm3] 3R_18932141_SNP [dm6]	T	A	4.620e^-4	0.837	INTRON CG42613	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	15038081	2L_15038081_SNP [dm3] 2L_15038081_SNP [dm6]	G	A	4.629e^-4	0.837	SYNONYMOUS_CODING CIAPIN1 DOWNSTREAM yellow-c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_sens

By genomic position
Variant impact
Gene name

mn_Aggressi_Soci_ADJ phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results