DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=9.755e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2067 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

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Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	5306725	3R_5306725_SNP [dm3] 3R_9481003_SNP [dm6]	C	T	1.519e^-7	0.277	INTRON CG16779
X	2868198	X_2868198_SNP [dm3] X_2974165_SNP [dm6]	T	C	1.117e^-6	0.831	UPSTREAM rst INTRON kirre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6089662	3L_6089662_SNP [dm3] 3L_6096562_SNP [dm6]	A	C	1.868e^-6	0.831	DOWNSTREAM loj INTERGENIC
3R	24676976	3R_24676976_SNP [dm3] 3R_28851254_SNP [dm6]	G	A	2.036e^-6	0.831	INTRON spg
3R	27118947	3R_27118947_SNP [dm3] 3R_31293225_SNP [dm6]	G	C	2.681e^-6	0.831	INTERGENIC
3R	24677074	3R_24677074_SNP [dm3] 3R_28851352_SNP [dm6]	A	T	2.839e^-6	0.831	INTRON spg
3R	26039034	3R_26039034_SNP [dm3] 3R_30213312_SNP [dm6]	A	T	4.149e^-6	0.831	DOWNSTREAM CecB & 2 others INTERGENIC
3R	6750442	3R_6750442_SNP [dm3] 3R_10924720_SNP [dm6]	A	G	4.321e^-6	0.831	INTERGENIC
3R	26039032	3R_26039032_SNP [dm3] 3R_30213310_SNP [dm6]	T	A	4.740e^-6	0.831	DOWNSTREAM CecB & 2 others INTERGENIC
3L	6609595	3L_6609595_SNP [dm3] 3L_6616495_SNP [dm6]	C	T	5.188e^-6	0.831	SYNONYMOUS_CODING CG8398	TF binding site mE1_TFBS_cad
3R	19027347	3R_19027347_SNP [dm3] 3R_23201625_SNP [dm6]	C	G	6.209e^-6	0.831	UPSTREAM cnc DOWNSTREAM fzo INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	874095	3L_874095_SNP [dm3] 3L_874095_SNP [dm6]	C	G	6.700e^-6	0.831	SYNONYMOUS_CODING CG32479	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3278322	3L_3278322_SNP [dm3] 3L_3278322_SNP [dm6]	C	T	7.999e^-6	0.831	INTERGENIC
X	2868054	X_2868054_SNP [dm3] X_2974021_SNP [dm6]	G	T	8.466e^-6	0.831	UPSTREAM rst INTRON kirre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6720707	3R_6720707_SNP [dm3] 3R_10894985_SNP [dm6]	G	C	8.699e^-6	0.831	SYNONYMOUS_CODING Leash	TF binding site mE1_TFBS_chinmo
3R	26039059	3R_26039059_SNP [dm3] 3R_30213337_SNP [dm6]	G	C	9.236e^-6	0.831	UTR_3_PRIME CecB DOWNSTREAM CecA2 & 1 other
X	2868096	X_2868096_SNP [dm3] X_2974063_SNP [dm6]	T	C	9.549e^-6	0.831	UPSTREAM rst INTRON kirre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8081122	3L_8081122_SNP [dm3] 3L_8088022_SNP [dm6]	T	C	9.783e^-6	0.831	SYNONYMOUS_CODING CG7565 INTRON Ect4
3L	3083555	3L_3083555_SNP [dm3] 3L_3083555_SNP [dm6]	G	A	1.036e^-5	0.831	INTRON CG11486	TF binding site mE1_TFBS_Trl
3L	874818	3L_874818_SNP [dm3] 3L_874818_SNP [dm6]	A	C	1.058e^-5	0.831	SYNONYMOUS_CODING CG32479	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3083546	3L_3083546_SNP [dm3] 3L_3083546_SNP [dm6]	G	T	1.168e^-5	0.831	INTRON CG11486	TF binding site mE1_TFBS_Trl
3R	10700487	3R_10700487_DEL [dm3] 3R_14874765_DEL [dm6]	AA	A	1.270e^-5	0.831	INTRON btsz
2L	8944866	2L_8944866_SNP [dm3] 2L_8944866_SNP [dm6]	A	C	1.274e^-5	0.831	SYNONYMOUS_CODING C1GalTA	TF binding site mE1_TFBS_cad
3R	14742088	3R_14742088_SNP [dm3] 3R_18916366_SNP [dm6]	C	G	1.312e^-5	0.831	INTRON Xrp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc
3L	6090003	3L_6090003_SNP [dm3] 3L_6096903_SNP [dm6]	C	G	1.380e^-5	0.831	UPSTREAM Ets65A DOWNSTREAM loj INTERGENIC	TF binding site mE1_TFBS_cad
3R	6778319	3R_6778319_SNP [dm3] 3R_10952597_SNP [dm6]	A	T	1.496e^-5	0.831	DOWNSTREAM Tengl4 INTERGENIC
3R	27131721	3R_27131721_SNP [dm3] 3R_31305999_SNP [dm6]	C	G	1.507e^-5	0.831	UPSTREAM CG11340 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24676998	3R_24676998_SNP [dm3] 3R_28851276_SNP [dm6]	T	C	1.525e^-5	0.831	INTRON spg
3L	7687182	3L_7687182_INS [dm3] 3L_7694082_INS [dm6]	A	AAAA	1.566e^-5	0.831	INTRON CG32373 & 2 others
X	2868155	X_2868155_SNP [dm3] X_2974122_SNP [dm6]	A	T	1.626e^-5	0.831	UPSTREAM rst INTRON kirre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6723169	3R_6723169_SNP [dm3] 3R_10897447_SNP [dm6]	T	A	1.687e^-5	0.831	UPSTREAM CR45577 DOWNSTREAM CR45578 INTERGENIC
3R	6723171	3R_6723171_SNP [dm3] 3R_10897449_SNP [dm6]	A	G	1.687e^-5	0.831	UPSTREAM CR45577 DOWNSTREAM CR45578 INTERGENIC
X	2868142	X_2868142_SNP [dm3] X_2974109_SNP [dm6]	T	C	1.689e^-5	0.831	UPSTREAM rst INTRON kirre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1863369	3L_1863369_SNP [dm3] 3L_1863369_SNP [dm6]	T	C	1.759e^-5	0.831	SYNONYMOUS_CODING HBS1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	6089961	3L_6089961_SNP [dm3] 3L_6096861_SNP [dm6]	A	G	1.855e^-5	0.831	UPSTREAM Ets65A DOWNSTREAM loj INTERGENIC	TF binding site mE1_TFBS_cad
2L	1626353	2L_1626353_SNP [dm3] 2L_1626353_SNP [dm6]	C	T	1.943e^-5	0.831	UPSTREAM CR44603 INTERGENIC
3L	17148367	3L_17148367_SNP [dm3] 3L_17155267_SNP [dm6]	A	T	1.980e^-5	0.831	INTRON Rbp6	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	22140552	2L_22140552_SNP [dm3] 2L_22140552_SNP [dm6]	C	T	2.002e^-5	0.831	INTRON CG42748	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	19811568	3R_19811568_SNP [dm3] 3R_23985846_SNP [dm6]	A	G	2.008e^-5	0.831	UPSTREAM CG5902 DOWNSTREAM CR31451 INTRON CG13603	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	5175317	3L_5175317_SNP [dm3] 3L_5182217_SNP [dm6]	G	A	2.034e^-5	0.831	INTRON shep
3L	15176751	3L_15176751_SNP [dm3] 3L_15183651_SNP [dm6]	T	C	2.043e^-5	0.831	INTERGENIC
X	2868156	X_2868156_SNP [dm3] X_2974123_SNP [dm6]	T	A	2.115e^-5	0.831	UPSTREAM rst INTRON kirre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14742138	3R_14742138_SNP [dm3] 3R_18916416_SNP [dm6]	A	T	2.162e^-5	0.831	INTRON Xrp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc
3L	10155961	3L_10155961_SNP [dm3] 3L_10162861_SNP [dm6]	G	T	2.184e^-5	0.831	INTRON dpr10
3R	26039023	3R_26039023_SNP [dm3] 3R_30213301_SNP [dm6]	C	T	2.354e^-5	0.831	DOWNSTREAM CecB & 2 others INTERGENIC
3L	838910	3L_838910_SNP [dm3] 3L_838910_SNP [dm6]	G	A	2.442e^-5	0.831	INTRON CG13887	TF binding site mE1_TFBS_inv
3R	14742137	3R_14742137_SNP [dm3] 3R_18916415_SNP [dm6]	A	G	2.450e^-5	0.831	INTRON Xrp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc
X	14572368	X_14572368_SNP [dm3] X_14678335_SNP [dm6]	C	T	2.608e^-5	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11426180	3L_11426180_SNP [dm3] 3L_11433080_SNP [dm6]	A	G	2.665e^-5	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	2868184	X_2868184_SNP [dm3] X_2974151_SNP [dm6]	G	A	2.675e^-5	0.831	UPSTREAM rst INTRON kirre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2868170	X_2868170_SNP [dm3] X_2974137_SNP [dm6]	T	A	2.816e^-5	0.831	UPSTREAM rst INTRON kirre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11727955	X_11727955_SNP [dm3] X_11833922_SNP [dm6]	A	G	2.943e^-5	0.831	UTR_3_PRIME rudhira DOWNSTREAM rudhira INTRON rudhira
X	2868236	X_2868236_SNP [dm3] X_2974203_SNP [dm6]	T	G	2.943e^-5	0.831	UPSTREAM rst INTRON kirre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18922403	2R_18922403_SNP [dm3] 2R_23034880_SNP [dm6]	A	G	3.079e^-5	0.831	INTRON twi & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	20656368	3R_20656368_SNP [dm3] 3R_24830646_SNP [dm6]	A	C	3.079e^-5	0.831	NON_SYNONYMOUS_CODING CG43273 UTR_5_PRIME CG43273 UPSTREAM CG31357	TF binding site BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
3L	3794967	3L_3794967_DEL [dm3] 3L_3794967_DEL [dm6]	TG	C	3.081e^-5	0.831	UPSTREAM CG32264 INTRON CG32264
3R	6749459	3R_6749459_SNP [dm3] 3R_10923737_SNP [dm6]	G	A	3.217e^-5	0.831	INTERGENIC
3L	8876119	3L_8876119_SNP [dm3] 3L_8883019_SNP [dm6]	A	C	3.320e^-5	0.831	INTRON dally
3L	5175312	3L_5175312_SNP [dm3] 3L_5182212_SNP [dm6]	T	C	3.342e^-5	0.831	INTRON shep
3R	14739052	3R_14739052_SNP [dm3] 3R_18913330_SNP [dm6]	T	A	3.350e^-5	0.831	UPSTREAM CG14291 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
3L	882969	3L_882969_SNP [dm3] 3L_882969_SNP [dm6]	A	C	3.582e^-5	0.831	UPSTREAM CG13907 INTRON CG32479	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	13288685	3L_13288685_DEL [dm3] 3L_13295585_DEL [dm6]	CC	C	3.626e^-5	0.831	DOWNSTREAM Sfp70A4 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14739298	3R_14739298_SNP [dm3] 3R_18913576_SNP [dm6]	G	A	3.631e^-5	0.831	UPSTREAM CG14291 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	2327612	2L_2327612_SNP [dm3] 2L_2327612_SNP [dm6]	A	G	3.685e^-5	0.831	INTRON CG9967 & 1 other
3R	27068931	3R_27068931_INS [dm3] 3R_31243209_INS [dm6]	A	AA	3.734e^-5	0.831	INTRON qless
X	12155168	X_12155168_DEL [dm3] X_12261135_DEL [dm6]	AACCCACGACGAC...	T	3.748e^-5	0.831	INTRON Ten-a	TF binding site mE1_TFBS_sens
2L	18365404	2L_18365404_SNP [dm3] 2L_18365404_SNP [dm6]	G	C	3.748e^-5	0.831	INTRON Fas3
2R	16770107	2R_16770107_INS [dm3] 2R_20882602_INS [dm6]	A	AA	3.755e^-5	0.831	UTR_3_PRIME Cib2
3L	9259055	3L_9259055_SNP [dm3] 3L_9265955_SNP [dm6]	T	A	3.775e^-5	0.831	INTRON GluRIB
2L	13106651	2L_13106651_SNP [dm3] 2L_13106651_SNP [dm6]	T	A	3.958e^-5	0.831	UPSTREAM CG5142 INTERGENIC
X	20874152	X_20874152_INS [dm3] X_21003125_INS [dm6]	T	TT	4.007e^-5	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4096378	3R_4096378_SNP [dm3] 3R_8270656_SNP [dm6]	T	C	4.038e^-5	0.831	UPSTREAM CG9630 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	12606299	3L_12606299_SNP [dm3] 3L_12613199_SNP [dm6]	A	T	4.090e^-5	0.831	INTRON caup	silencer mE1_HDAC_PRE
3L	874627	3L_874627_SNP [dm3] 3L_874627_SNP [dm6]	C	T	4.093e^-5	0.831	SYNONYMOUS_CODING CG32479	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	6723020	3R_6723020_SNP [dm3] 3R_10897298_SNP [dm6]	T	G	4.187e^-5	0.831	UPSTREAM CR45577 DOWNSTREAM Leash & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_sna
2R	17568895	2R_17568895_SNP [dm3] 2R_21681390_SNP [dm6]	C	G	4.339e^-5	0.831	INTRON CG30263
2L	22111021	2L_22111021_SNP [dm3] 2L_22111021_SNP [dm6]	T	G	4.345e^-5	0.831	DOWNSTREAM CG6675 INTERGENIC	transposable element FlyBase
3L	12606326	3L_12606326_SNP [dm3] 3L_12613226_SNP [dm6]	A	G	4.348e^-5	0.831	INTRON caup	silencer mE1_HDAC_PRE
3R	14742164	3R_14742164_SNP [dm3] 3R_18916442_SNP [dm6]	C	T	4.486e^-5	0.831	INTRON Xrp1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc
X	8216908	X_8216908_SNP [dm3] X_8322875_SNP [dm6]	G	A	4.513e^-5	0.831	INTRON nAChRalpha3
2R	8778822	2R_8778822_SNP [dm3] 2R_12891317_SNP [dm6]	A	T	4.518e^-5	0.831	INTRON vg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	23744455	3R_23744455_SNP [dm3] 3R_27918733_SNP [dm6]	G	T	4.535e^-5	0.831	NON_SYNONYMOUS_CODING CG33213 DOWNSTREAM mRpS22	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	10617558	3R_10617558_SNP [dm3] 3R_14791836_SNP [dm6]	G	T	4.600e^-5	0.831	UTR_3_PRIME jvl INTRON jvl
3R	19027374	3R_19027374_SNP [dm3] 3R_23201652_SNP [dm6]	G	A	4.612e^-5	0.831	UTR_3_PRIME fzo UPSTREAM cnc INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	22270711	3L_22270711_SNP [dm3] 3L_22277611_SNP [dm6]	A	C	4.629e^-5	0.831	UTR_5_PRIME srpk79D UPSTREAM srpk79D INTRON srpk79D	TF binding site mE1_TFBS_chinmo
3L	18670929	3L_18670929_SNP [dm3] 3L_18677829_SNP [dm6]	C	A	4.641e^-5	0.831	UTR_3_PRIME GNBP1
X	15488966	X_15488966_SNP [dm3] X_15594933_SNP [dm6]	A	T	4.695e^-5	0.831	INTERGENIC	TF binding site mE1_TFBS_bab1
3L	11336444	3L_11336444_INS [dm3] 3L_11343344_INS [dm6]	T	TGAGAATATTAATCTTT...	4.748e^-5	0.831	DOWNSTREAM CR45250 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	10053439	3R_10053439_SNP [dm3] 3R_14227717_SNP [dm6]	G	T	4.768e^-5	0.831	UPSTREAM CG9631 DOWNSTREAM CG9624 INTERGENIC
3R	6696466	3R_6696466_SNP [dm3] 3R_10870744_SNP [dm6]	C	T	4.845e^-5	0.831	DOWNSTREAM Fdh & 1 other INTERGENIC
3L	20085887	3L_20085887_DEL [dm3] 3L_20092787_DEL [dm6]	CCCACTGTATGGGCTCAC...	C	4.893e^-5	0.831	INTERGENIC
3L	872319	3L_872319_SNP [dm3] 3L_872319_SNP [dm6]	C	T	4.949e^-5	0.831	UPSTREAM CG32479 DOWNSTREAM CG12502 INTRON CG32479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8779597	2R_8779597_SNP [dm3] 2R_12892092_SNP [dm6]	A	C	4.991e^-5	0.831	INTRON vg	TF binding site mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3L	18717414	3L_18717414_SNP [dm3] 3L_18724314_SNP [dm6]	A	G	5.017e^-5	0.831	DOWNSTREAM CR43985 INTERGENIC
3L	11336512	3L_11336512_SNP [dm3] 3L_11343412_SNP [dm6]	G	C	5.128e^-5	0.831	DOWNSTREAM CR45250 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	16404730	2L_16404730_SNP [dm3] 2L_16404730_SNP [dm6]	C	A	5.217e^-5	0.831	SYNONYMOUS_CODING CG5888
3L	3075326	3L_3075326_SNP [dm3] 3L_3075326_SNP [dm6]	C	A	5.292e^-5	0.831	INTRON CG11486	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
3L	3075563	3L_3075563_SNP [dm3] 3L_3075563_SNP [dm6]	C	G	5.292e^-5	0.831	INTRON CG11486	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16155890	2R_16155890_SNP [dm3] 2R_20268385_SNP [dm6]	G	A	5.296e^-5	0.831	SYNONYMOUS_CODING CG8908	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9456239	2R_9456239_SNP [dm3] 2R_13568734_SNP [dm6]	C	G	5.310e^-5	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_ttk mE1_TFBS_zfh1

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By genomic position
Variant impact
Gene name

mn_Aggressi_Soci_ADJ phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results