DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.731e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1738 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	5306725	3R_5306725_SNP [dm3] 3R_9481003_SNP [dm6]	C	T	2.145e^-7	0.391	INTRON CG16779
3R	24676976	3R_24676976_SNP [dm3] 3R_28851254_SNP [dm6]	G	A	1.737e^-6	0.964	INTRON spg
3L	8876119	3L_8876119_SNP [dm3] 3L_8883019_SNP [dm6]	A	C	2.957e^-6	0.964	INTRON dally
3R	23744455	3R_23744455_SNP [dm3] 3R_27918733_SNP [dm6]	G	T	3.007e^-6	0.964	NON_SYNONYMOUS_CODING CG33213 DOWNSTREAM mRpS22	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	6609595	3L_6609595_SNP [dm3] 3L_6616495_SNP [dm6]	C	T	3.579e^-6	0.964	SYNONYMOUS_CODING CG8398	TF binding site mE1_TFBS_cad
3L	20155651	3L_20155651_SNP [dm3] 3L_20162551_SNP [dm6]	A	G	4.384e^-6	0.964	SYNONYMOUS_CODING CG42674 INTRON CG42674	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	2868198	X_2868198_SNP [dm3] X_2974165_SNP [dm6]	T	C	4.543e^-6	0.964	UPSTREAM rst INTRON kirre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18240614	2R_18240614_SNP [dm3] 2R_22353109_SNP [dm6]	C	T	5.675e^-6	0.964	INTRON Liprin-gamma
X	20537097	X_20537097_SNP [dm3] X_20666070_SNP [dm6]	A	G	5.941e^-6	0.964	INTRON CG1835	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	14572368	X_14572368_SNP [dm3] X_14678335_SNP [dm6]	C	T	6.880e^-6	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6750442	3R_6750442_SNP [dm3] 3R_10924720_SNP [dm6]	A	G	7.701e^-6	0.964	INTERGENIC
3R	6778319	3R_6778319_SNP [dm3] 3R_10952597_SNP [dm6]	A	T	8.418e^-6	0.964	DOWNSTREAM Tengl4 INTERGENIC
2R	7583308	2R_7583308_SNP [dm3] 2R_11695803_SNP [dm6]	A	G	9.298e^-6	0.964	UTR_3_PRIME CG13197 DOWNSTREAM CG13197
3R	24676998	3R_24676998_SNP [dm3] 3R_28851276_SNP [dm6]	T	C	9.310e^-6	0.964	INTRON spg
3L	15176751	3L_15176751_SNP [dm3] 3L_15183651_SNP [dm6]	T	C	1.101e^-5	0.964	INTERGENIC
X	2868236	X_2868236_SNP [dm3] X_2974203_SNP [dm6]	T	G	1.492e^-5	0.964	UPSTREAM rst INTRON kirre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10993283	3L_10993283_SNP [dm3] 3L_11000183_SNP [dm6]	G	A	1.546e^-5	0.964	INTRON klu	TF binding site mE1_TFBS_chinmo
3L	8081122	3L_8081122_SNP [dm3] 3L_8088022_SNP [dm6]	T	C	1.672e^-5	0.964	SYNONYMOUS_CODING CG7565 INTRON Ect4
2R	18843695	2R_18843695_INS [dm3] 2R_22956172_INS [dm6]	C	CC	1.811e^-5	0.964	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	874095	3L_874095_SNP [dm3] 3L_874095_SNP [dm6]	C	G	1.844e^-5	0.964	SYNONYMOUS_CODING CG32479	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	2868096	X_2868096_SNP [dm3] X_2974063_SNP [dm6]	T	C	1.903e^-5	0.964	UPSTREAM rst INTRON kirre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11310910	2L_11310910_SNP [dm3] 2L_11310910_SNP [dm6]	C	T	1.919e^-5	0.964	INTERGENIC
2L	22140552	2L_22140552_SNP [dm3] 2L_22140552_SNP [dm6]	C	T	1.992e^-5	0.964	INTRON CG42748	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
X	8216908	X_8216908_SNP [dm3] X_8322875_SNP [dm6]	G	A	1.996e^-5	0.964	INTRON nAChRalpha3
X	20878009	X_20878009_SNP [dm3] X_21006982_SNP [dm6]	A	G	2.079e^-5	0.964	INTERGENIC
3L	10082859	3L_10082859_SNP [dm3] 3L_10089759_SNP [dm6]	T	C	2.094e^-5	0.964	UPSTREAM CG14160 DOWNSTREAM CG32053 INTRON dpr6
3R	10592984	3R_10592984_SNP [dm3] 3R_14767262_SNP [dm6]	A	T	2.096e^-5	0.964	INTRON jvl
2L	14305464	2L_14305464_SNP [dm3] 2L_14305464_SNP [dm6]	T	C	2.117e^-5	0.964	INTRON wb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	5904102	3L_5904102_SNP [dm3] 3L_5911002_SNP [dm6]	C	T	2.132e^-5	0.964	INTRON CG13288
3L	3075326	3L_3075326_SNP [dm3] 3L_3075326_SNP [dm6]	C	A	2.162e^-5	0.964	INTRON CG11486	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
3L	3075563	3L_3075563_SNP [dm3] 3L_3075563_SNP [dm6]	C	G	2.162e^-5	0.964	INTRON CG11486	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26039032	3R_26039032_SNP [dm3] 3R_30213310_SNP [dm6]	T	A	2.222e^-5	0.964	DOWNSTREAM CecB & 2 others INTERGENIC
2L	13106651	2L_13106651_SNP [dm3] 2L_13106651_SNP [dm6]	T	A	2.223e^-5	0.964	UPSTREAM CG5142 INTERGENIC
3R	10617558	3R_10617558_SNP [dm3] 3R_14791836_SNP [dm6]	G	T	2.305e^-5	0.964	UTR_3_PRIME jvl INTRON jvl
X	2868155	X_2868155_SNP [dm3] X_2974122_SNP [dm6]	A	T	2.331e^-5	0.964	UPSTREAM rst INTRON kirre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6811212	3L_6811212_SNP [dm3] 3L_6818112_SNP [dm6]	T	G	2.360e^-5	0.964	INTERGENIC	regulatory region REDfly_CRMs
X	2868156	X_2868156_SNP [dm3] X_2974123_SNP [dm6]	T	A	2.476e^-5	0.964	UPSTREAM rst INTRON kirre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4590527	2L_4590527_SNP [dm3] 2L_4590527_SNP [dm6]	C	T	2.495e^-5	0.964	INTRON dp
2L	4590549	2L_4590549_SNP [dm3] 2L_4590549_SNP [dm6]	G	C	2.495e^-5	0.964	INTRON dp
2L	10468950	2L_10468950_SNP [dm3] 2L_10468950_SNP [dm6]	A	G	2.506e^-5	0.964	INTRON RluA-1
3L	6089662	3L_6089662_SNP [dm3] 3L_6096562_SNP [dm6]	A	C	2.545e^-5	0.964	DOWNSTREAM loj INTERGENIC
X	20874152	X_20874152_INS [dm3] X_21003125_INS [dm6]	T	TT	2.638e^-5	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2868054	X_2868054_SNP [dm3] X_2974021_SNP [dm6]	G	T	2.642e^-5	0.964	UPSTREAM rst INTRON kirre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4294432	X_4294432_SNP [dm3] X_4400399_SNP [dm6]	A	G	2.739e^-5	0.964	INTRON CR32773
3R	26039034	3R_26039034_SNP [dm3] 3R_30213312_SNP [dm6]	A	T	2.752e^-5	0.964	DOWNSTREAM CecB & 2 others INTERGENIC
2R	17706749	2R_17706749_SNP [dm3] 2R_21819244_SNP [dm6]	A	T	2.762e^-5	0.964	INTERGENIC
2L	5110646	2L_5110646_SNP [dm3] 2L_5110646_SNP [dm6]	A	T	2.992e^-5	0.964	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16795267	3R_16795267_SNP [dm3] 3R_20969545_SNP [dm6]	A	T	3.019e^-5	0.964	INTRON Atpalpha
2R	14192441	2R_14192441_SNP [dm3] 2R_18304936_SNP [dm6]	C	A	3.081e^-5	0.964	UPSTREAM CG14505 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	17705459	2R_17705459_SNP [dm3] 2R_21817954_SNP [dm6]	C	T	3.101e^-5	0.964	INTERGENIC
2L	5110774	2L_5110774_SNP [dm3] 2L_5110774_SNP [dm6]	C	T	3.163e^-5	0.964	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	2868142	X_2868142_SNP [dm3] X_2974109_SNP [dm6]	T	C	3.169e^-5	0.964	UPSTREAM rst INTRON kirre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1456087	3L_1456087_SNP [dm3] 3L_1456087_SNP [dm6]	A	G	3.193e^-5	0.964	INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	5185716	3L_5185716_DEL [dm3] 3L_5192616_DEL [dm6]	GTG	G	3.242e^-5	0.964	INTRON shep
3R	24677074	3R_24677074_SNP [dm3] 3R_28851352_SNP [dm6]	A	T	3.335e^-5	0.964	INTRON spg
3R	26039059	3R_26039059_SNP [dm3] 3R_30213337_SNP [dm6]	G	C	3.393e^-5	0.964	UTR_3_PRIME CecB DOWNSTREAM CecA2 & 1 other
3R	6749459	3R_6749459_SNP [dm3] 3R_10923737_SNP [dm6]	G	A	3.478e^-5	0.964	INTERGENIC
3R	14742088	3R_14742088_SNP [dm3] 3R_18916366_SNP [dm6]	C	G	3.506e^-5	0.964	INTRON Xrp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc
X	6902390	X_6902390_DEL [dm3] X_7008357_DEL [dm6]	CATCCCCCGCC...	C	3.516e^-5	0.964	DOWNSTREAM cm INTRON Inx7	TF binding site BDTNP1_TFBS_dl
3R	10700487	3R_10700487_DEL [dm3] 3R_14874765_DEL [dm6]	AA	A	3.524e^-5	0.964	INTRON btsz
3R	25165431	3R_25165431_SNP [dm3] 3R_29339709_SNP [dm6]	G	C	3.661e^-5	0.964	INTERGENIC
2L	14305453	2L_14305453_SNP [dm3] 2L_14305453_SNP [dm6]	C	T	3.689e^-5	0.964	INTRON wb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	5456832	X_5456832_SNP [dm3] X_5562799_SNP [dm6]	C	G	3.701e^-5	0.964	INTERGENIC	TF binding site mE1_TFBS_inv
X	5456834	X_5456834_DEL [dm3] X_5562801_DEL [dm6]	AA	A	3.701e^-5	0.964	INTERGENIC	TF binding site mE1_TFBS_inv
3L	15384707	3L_15384707_SNP [dm3] 3L_15391607_SNP [dm6]	A	T	3.741e^-5	0.964	INTERGENIC
3R	27885994	3R_27885994_SNP [dm3] 3R_32060272_SNP [dm6]	A	C	3.778e^-5	0.964	INTRON Map205
2R	11773496	2R_11773496_SNP [dm3] 2R_15885991_SNP [dm6]	A	G	3.782e^-5	0.964	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
X	6902406	X_6902406_SNP [dm3] X_7008373_SNP [dm6]	T	A	3.785e^-5	0.964	DOWNSTREAM cm INTRON Inx7	TF binding site BDTNP1_TFBS_dl
3R	4298300	3R_4298300_SNP [dm3] 3R_8472578_SNP [dm6]	G	T	3.868e^-5	0.964	INTRON CG45263	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
X	5456827	X_5456827_SNP [dm3] X_5562794_SNP [dm6]	C	G	3.898e^-5	0.964	INTERGENIC	TF binding site mE1_TFBS_inv
3L	2993811	3L_2993811_SNP [dm3] 3L_2993811_SNP [dm6]	C	G	3.960e^-5	0.964	INTERGENIC
2L	12268935	2L_12268935_SNP [dm3] 2L_12268935_SNP [dm6]	A	T	4.011e^-5	0.964	INTRON aret
2L	4521176	2L_4521176_SNP [dm3] 2L_4521176_SNP [dm6]	A	G	4.066e^-5	0.964	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	15118226	X_15118226_SNP [dm3] X_15224193_SNP [dm6]	T	C	4.163e^-5	0.964	UPSTREAM CG43076 INTERGENIC
3L	6090003	3L_6090003_SNP [dm3] 3L_6096903_SNP [dm6]	C	G	4.172e^-5	0.964	UPSTREAM Ets65A DOWNSTREAM loj INTERGENIC	TF binding site mE1_TFBS_cad
3R	14524144	3R_14524144_SNP [dm3] 3R_18698422_SNP [dm6]	G	A	4.206e^-5	0.964	INTERGENIC
2R	14956750	2R_14956750_DEL [dm3] 2R_19069245_DEL [dm6]	TATGTAGGCAGT...	C	4.262e^-5	0.964	INTRON 5-HT1A
2L	5109707	2L_5109707_SNP [dm3] 2L_5109707_SNP [dm6]	C	T	4.335e^-5	0.964	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	2868184	X_2868184_SNP [dm3] X_2974151_SNP [dm6]	G	A	4.399e^-5	0.964	UPSTREAM rst INTRON kirre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9294257	3L_9294257_DEL [dm3] 3L_9301157_DEL [dm6]	TT	A	4.647e^-5	0.964	INTERGENIC
X	13983866	X_13983866_SNP [dm3] X_14089833_SNP [dm6]	G	T	4.739e^-5	0.964	INTERGENIC
X	3379455	X_3379455_DEL [dm3] X_3485422_DEL [dm6]	TG	A	4.769e^-5	0.964	UPSTREAM CG10803 & 1 other DOWNSTREAM CG10802 INTRON CR44999	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3R	20830604	3R_20830604_SNP [dm3] 3R_25004882_SNP [dm6]	T	C	4.808e^-5	0.964	INTRON tnc
3R	9589460	3R_9589460_SNP [dm3] 3R_13763738_SNP [dm6]	C	G	4.877e^-5	0.964	UTR_3_PRIME CG34383	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	10367292	3L_10367292_SNP [dm3] 3L_10374192_SNP [dm6]	C	T	5.018e^-5	0.964	INTERGENIC
3L	11309872	3L_11309872_SNP [dm3] 3L_11316772_SNP [dm6]	C	T	5.035e^-5	0.964	DOWNSTREAM CR44361 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10912843	3L_10912843_SNP [dm3] 3L_10919743_SNP [dm6]	G	T	5.101e^-5	0.964	INTERGENIC
2L	5109859	2L_5109859_SNP [dm3] 2L_5109859_SNP [dm6]	A	G	5.127e^-5	0.964	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16794912	3R_16794912_SNP [dm3] 3R_20969190_SNP [dm6]	C	T	5.155e^-5	0.964	INTRON Atpalpha
2L	1917256	2L_1917256_SNP [dm3] 2L_1917256_SNP [dm6]	G	A	5.202e^-5	0.964	INTRON CG7337
3R	26039023	3R_26039023_SNP [dm3] 3R_30213301_SNP [dm6]	C	T	5.255e^-5	0.964	DOWNSTREAM CecB & 2 others INTERGENIC
3L	7687182	3L_7687182_INS [dm3] 3L_7694082_INS [dm6]	A	AAAA	5.301e^-5	0.964	INTRON CG32373 & 2 others
X	2868170	X_2868170_SNP [dm3] X_2974137_SNP [dm6]	T	A	5.390e^-5	0.964	UPSTREAM rst INTRON kirre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	23848482	3L_23848482_SNP [dm3] 3L_23855382_SNP [dm6]	G	T	5.449e^-5	0.964	INTRON CG40470
2L	4055630	2L_4055630_SNP [dm3] 2L_4055630_SNP [dm6]	C	T	5.479e^-5	0.964	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3L	6543979	3L_6543979_SNP [dm3] 3L_6550879_SNP [dm6]	G	C	5.482e^-5	0.964	UTR_5_PRIME CG18769 DOWNSTREAM sfl INTRON CG18769	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	964624	2R_964624_SNP [dm3] 2R_5077119_SNP [dm6]	T	A	5.487e^-5	0.964	INTERGENIC	transposable element FlyBase
3L	7227533	3L_7227533_SNP [dm3] 3L_7234433_SNP [dm6]	G	A	5.494e^-5	0.964	UPSTREAM CG14826 INTERGENIC
X	9700758	X_9700758_SNP [dm3] X_9806725_SNP [dm6]	G	T	5.514e^-5	0.964	INTRON CG32698
3L	6089961	3L_6089961_SNP [dm3] 3L_6096861_SNP [dm6]	A	G	5.594e^-5	0.964	UPSTREAM Ets65A DOWNSTREAM loj INTERGENIC	TF binding site mE1_TFBS_cad
3R	14739298	3R_14739298_SNP [dm3] 3R_18913576_SNP [dm6]	G	A	5.676e^-5	0.964	UPSTREAM CG14291 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	3031714	3L_3031714_SNP [dm3] 3L_3031714_SNP [dm6]	C	T	5.693e^-5	0.964	INTERGENIC
3R	9297527	3R_9297527_SNP [dm3] 3R_13471805_SNP [dm6]	A	T	5.729e^-5	0.964	INTERGENIC
X	3383913	X_3383913_INS [dm3] X_3489880_INS [dm6]	T	TAACCTCT	5.760e^-5	0.964	UTR_3_PRIME CG10803 DOWNSTREAM CG10803 INTRON CR44999	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
X	3383923	X_3383923_SNP [dm3] X_3489890_SNP [dm6]	A	G	5.760e^-5	0.964	UTR_3_PRIME CG10803 DOWNSTREAM CG10803 INTRON CR44999	TF binding site mE1_TFBS_HSA
X	18256235	X_18256235_SNP [dm3] X_18362202_SNP [dm6]	C	A	5.869e^-5	0.964	UTR_3_PRIME CG6106 DOWNSTREAM CG6106
3R	6015387	3R_6015387_SNP [dm3] 3R_10189665_SNP [dm6]	G	A	5.907e^-5	0.964	UPSTREAM CG12814 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	16793694	2L_16793694_SNP [dm3] 2L_16793694_SNP [dm6]	T	C	5.914e^-5	0.964	UPSTREAM Ugt36Ba DOWNSTREAM CG17928 INTERGENIC
3L	5175312	3L_5175312_SNP [dm3] 3L_5182212_SNP [dm6]	T	C	5.939e^-5	0.964	INTRON shep
3L	5517412	3L_5517412_SNP [dm3] 3L_5524312_SNP [dm6]	C	A	6.002e^-5	0.964	INTRON Lkr
2R	9189666	2R_9189666_SNP [dm3] 2R_13302161_SNP [dm6]	C	G	6.018e^-5	0.964	DOWNSTREAM CG17047 INTERGENIC
3L	5274111	3L_5274111_SNP [dm3] 3L_5281011_SNP [dm6]	A	G	6.084e^-5	0.964	INTERGENIC
3R	9311875	3R_9311875_SNP [dm3] 3R_13486153_SNP [dm6]	A	C	6.134e^-5	0.964	INTERGENIC
3L	5175317	3L_5175317_SNP [dm3] 3L_5182217_SNP [dm6]	G	A	6.136e^-5	0.964	INTRON shep
2L	20385555	2L_20385555_SNP [dm3] 2L_20385555_SNP [dm6]	T	G	6.163e^-5	0.964	UTR_3_PRIME CG10947 DOWNSTREAM CG10947
3R	5562668	3R_5562668_SNP [dm3] 3R_9736946_SNP [dm6]	C	T	6.168e^-5	0.964	INTRON CG12950
X	11727955	X_11727955_SNP [dm3] X_11833922_SNP [dm6]	A	G	6.306e^-5	0.964	UTR_3_PRIME rudhira DOWNSTREAM rudhira INTRON rudhira
3R	6762864	3R_6762864_SNP [dm3] 3R_10937142_SNP [dm6]	G	A	6.307e^-5	0.964	INTERGENIC
2L	2327612	2L_2327612_SNP [dm3] 2L_2327612_SNP [dm6]	A	G	6.341e^-5	0.964	INTRON CG9967 & 1 other
2R	665516	2R_665516_SNP [dm3] 2R_4778011_SNP [dm6]	C	T	6.447e^-5	0.964	INTERGENIC	transposable element FlyBase
2L	4055627	2L_4055627_SNP [dm3] 2L_4055627_SNP [dm6]	T	C	6.454e^-5	0.964	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
X	21136996	X_21136996_SNP [dm3] X_21265969_SNP [dm6]	A	C	6.495e^-5	0.964	INTRON CG32521
3L	15176750	3L_15176750_SNP [dm3] 3L_15183650_SNP [dm6]	C	T	6.538e^-5	0.964	INTERGENIC
X	20537018	X_20537018_SNP [dm3] X_20665991_SNP [dm6]	A	G	6.570e^-5	0.964	INTRON CG1835	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	14572171	X_14572171_SNP [dm3] X_14678138_SNP [dm6]	A	T	6.710e^-5	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3083546	3L_3083546_SNP [dm3] 3L_3083546_SNP [dm6]	G	T	6.712e^-5	0.964	INTRON CG11486	TF binding site mE1_TFBS_Trl
X	3383841	X_3383841_SNP [dm3] X_3489808_SNP [dm6]	T	G	6.728e^-5	0.964	UTR_3_PRIME CG10803 DOWNSTREAM CG10803 INTRON CR44999	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3L	20254781	3L_20254781_SNP [dm3] 3L_20261681_SNP [dm6]	C	T	6.964e^-5	0.964	INTRON rdgC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	15266816	2L_15266816_SNP [dm3] 2L_15266816_SNP [dm6]	G	A	7.029e^-5	0.964	SYNONYMOUS_CODING Cul3	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	5566512	3R_5566512_SNP [dm3] 3R_9740790_SNP [dm6]	G	A	7.036e^-5	0.964	UPSTREAM Pnn & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	14742138	3R_14742138_SNP [dm3] 3R_18916416_SNP [dm6]	A	T	7.037e^-5	0.964	INTRON Xrp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc
3R	16794909	3R_16794909_SNP [dm3] 3R_20969187_SNP [dm6]	A	T	7.091e^-5	0.964	INTRON Atpalpha
2R	19637757	2R_19637757_SNP [dm3] 2R_23750234_SNP [dm6]	G	C	7.150e^-5	0.964	UPSTREAM CG12491 & 1 other INTERGENIC
X	8216845	X_8216845_SNP [dm3] X_8322812_SNP [dm6]	G	A	7.248e^-5	0.964	INTRON nAChRalpha3
2L	17893292	2L_17893292_SNP [dm3] 2L_17893292_SNP [dm6]	A	G	7.316e^-5	0.964	UPSTREAM CR43420 INTERGENIC
X	2867991	X_2867991_SNP [dm3] X_2973958_SNP [dm6]	C	T	7.410e^-5	0.964	UPSTREAM rst INTRON kirre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5574603	3R_5574603_SNP [dm3] 3R_9748881_SNP [dm6]	A	T	7.479e^-5	0.964	INTRON PpD3	TF binding site mE1_TFBS_sens
3R	10595935	3R_10595935_SNP [dm3] 3R_14770213_SNP [dm6]	T	G	7.491e^-5	0.964	INTRON jvl
2L	1673841	2L_1673841_SNP [dm3] 2L_1673841_SNP [dm6]	C	T	7.514e^-5	0.964	INTRON chinmo
3L	16796804	3L_16796804_SNP [dm3] 3L_16803704_SNP [dm6]	A	G	7.517e^-5	0.964	INTRON CG9674	TF binding site mE1_TFBS_cad
3R	25165426	3R_25165426_SNP [dm3] 3R_29339704_SNP [dm6]	T	A	7.599e^-5	0.964	INTERGENIC
3R	27118947	3R_27118947_SNP [dm3] 3R_31293225_SNP [dm6]	G	C	7.655e^-5	0.964	INTERGENIC
3R	5571743	3R_5571743_SNP [dm3] 3R_9746021_SNP [dm6]	A	G	7.679e^-5	0.964	UTR_5_PRIME CG34409 DOWNSTREAM CG12948	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12195654	X_12195654_SNP [dm3] X_12301621_SNP [dm6]	A	T	7.705e^-5	0.964	INTRON Ten-a
X	20878353	X_20878353_SNP [dm3] X_21007326_SNP [dm6]	C	T	7.748e^-5	0.964	INTERGENIC
2R	7910145	2R_7910145_SNP [dm3] 2R_12022640_SNP [dm6]	C	T	7.806e^-5	0.964	DOWNSTREAM CG8964 INTERGENIC
X	10286698	X_10286698_SNP [dm3] X_10392665_SNP [dm6]	A	C	7.839e^-5	0.964	INTRON flw
3R	14742137	3R_14742137_SNP [dm3] 3R_18916415_SNP [dm6]	A	G	7.848e^-5	0.964	INTRON Xrp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc
X	19975235	X_19975235_SNP [dm3] X_20081202_SNP [dm6]	T	C	7.939e^-5	0.964	INTERGENIC
3R	12548399	3R_12548399_SNP [dm3] 3R_16722677_SNP [dm6]	A	T	8.004e^-5	0.964	INTRON Ubx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10250966	3R_10250966_SNP [dm3] 3R_14425244_SNP [dm6]	T	G	8.035e^-5	0.964	INTRON cv-c
2L	15990390	2L_15990390_SNP [dm3] 2L_15990390_SNP [dm6]	T	G	8.354e^-5	0.964	DOWNSTREAM CR43412 INTERGENIC
X	5544474	X_5544474_SNP [dm3] X_5650441_SNP [dm6]	G	A	8.428e^-5	0.964	DOWNSTREAM CG42265 INTERGENIC
3L	11181882	3L_11181882_SNP [dm3] 3L_11188782_SNP [dm6]	A	G	8.540e^-5	0.964	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	3794967	3L_3794967_DEL [dm3] 3L_3794967_DEL [dm6]	TG	C	8.554e^-5	0.964	UPSTREAM CG32264 INTRON CG32264
2R	1092365	2R_1092365_SNP [dm3] 2R_5204860_SNP [dm6]	G	T	8.555e^-5	0.964	INTRON Nipped-A
3R	6723169	3R_6723169_SNP [dm3] 3R_10897447_SNP [dm6]	T	A	8.575e^-5	0.964	UPSTREAM CR45577 DOWNSTREAM CR45578 INTERGENIC
3R	6723171	3R_6723171_SNP [dm3] 3R_10897449_SNP [dm6]	A	G	8.575e^-5	0.964	UPSTREAM CR45577 DOWNSTREAM CR45578 INTERGENIC
2L	1917308	2L_1917308_SNP [dm3] 2L_1917308_SNP [dm6]	C	T	8.713e^-5	0.964	INTRON CG7337
2L	1917331	2L_1917331_SNP [dm3] 2L_1917331_SNP [dm6]	G	C	8.713e^-5	0.964	INTRON CG7337
X	12103492	X_12103492_SNP [dm3] X_12209459_SNP [dm6]	A	T	8.733e^-5	0.964	INTRON Ten-a
2R	8778822	2R_8778822_SNP [dm3] 2R_12891317_SNP [dm6]	A	T	8.833e^-5	0.964	INTRON vg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	1140812	2R_1140812_SNP [dm3] 2R_5253307_SNP [dm6]	A	T	8.972e^-5	0.964	UPSTREAM CR41443 INTERGENIC
X	20878407	X_20878407_SNP [dm3] X_21007380_SNP [dm6]	G	T	9.026e^-5	0.964	INTERGENIC
2R	18240573	2R_18240573_SNP [dm3] 2R_22353068_SNP [dm6]	G	A	9.041e^-5	0.964	INTRON Liprin-gamma
X	15118041	X_15118041_SNP [dm3] X_15224008_SNP [dm6]	G	A	9.059e^-5	0.964	UPSTREAM CG43076 INTERGENIC
3R	6019486	3R_6019486_SNP [dm3] 3R_10193764_SNP [dm6]	T	A	9.082e^-5	0.964	INTRON Syn
X	3383784	X_3383784_DEL [dm3] X_3489751_DEL [dm6]	AATATATCCA	A	9.160e^-5	0.964	UTR_3_PRIME CG10803 DOWNSTREAM CG10803 INTRON CR44999	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3L	18789351	3L_18789351_INS [dm3] 3L_18796251_INS [dm6]	C	CGCC	9.186e^-5	0.964	INTRON ftz-f1
3L	3278268	3L_3278268_SNP [dm3] 3L_3278268_SNP [dm6]	C	T	9.188e^-5	0.964	INTERGENIC
3L	5185707	3L_5185707_SNP [dm3] 3L_5192607_SNP [dm6]	C	T	9.192e^-5	0.964	INTRON shep
2R	7523803	2R_7523803_SNP [dm3] 2R_11636298_SNP [dm6]	G	C	9.238e^-5	0.964	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	6019554	3R_6019554_DEL [dm3] 3R_10193832_DEL [dm6]	ATTTAA	A	9.275e^-5	0.964	INTRON Syn
3L	13288685	3L_13288685_DEL [dm3] 3L_13295585_DEL [dm6]	CC	C	9.393e^-5	0.964	DOWNSTREAM Sfp70A4 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18280892	3L_18280892_SNP [dm3] 3L_18287792_SNP [dm6]	C	A	9.547e^-5	0.964	INTERGENIC
2L	5397027	2L_5397027_SNP [dm3] 2L_5397027_SNP [dm6]	C	T	9.549e^-5	0.964	INTERGENIC
3L	18790115	3L_18790115_SNP [dm3] 3L_18797015_SNP [dm6]	G	T	9.564e^-5	0.964	INTRON ftz-f1
3L	10389960	3L_10389960_SNP [dm3] 3L_10396860_SNP [dm6]	C	A	9.575e^-5	0.964	INTERGENIC
3L	19229716	3L_19229716_SNP [dm3] 3L_19236616_SNP [dm6]	A	G	9.596e^-5	0.964	SYNONYMOUS_CODING CG33647
3L	11181949	3L_11181949_SNP [dm3] 3L_11188849_SNP [dm6]	G	C	9.674e^-5	0.964	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3076081	3L_3076081_SNP [dm3] 3L_3076081_SNP [dm6]	C	A	9.745e^-5	0.964	INTRON CG11486	TF binding site mE1_TFBS_cad
X	14572372	X_14572372_SNP [dm3] X_14678339_SNP [dm6]	C	A	9.781e^-5	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12152563	2L_12152563_SNP [dm3] 2L_12152563_SNP [dm6]	G	A	9.819e^-5	0.964	INTRON CG31760
3R	6019498	3R_6019498_SNP [dm3] 3R_10193776_SNP [dm6]	T	C	9.932e^-5	0.964	INTRON Syn
2L	4239625	2L_4239625_SNP [dm3] 2L_4239625_SNP [dm6]	C	G	9.988e^-5	0.964	DOWNSTREAM CR45720 INTERGENIC
3R	5566876	3R_5566876_INS [dm3] 3R_9741154_INS [dm6]	A	AACAA	1.012e^-4	0.964	INTRON Pnn	TF binding site mE1_TFBS_HSA
3R	5144312	3R_5144312_SNP [dm3] 3R_9318590_SNP [dm6]	A	G	1.025e^-4	0.964	INTRON CG8861
X	13836095	X_13836095_SNP [dm3] X_13942062_SNP [dm6]	A	G	1.027e^-4	0.964	INTRON mamo
3R	20830619	3R_20830619_SNP [dm3] 3R_25004897_SNP [dm6]	A	G	1.028e^-4	0.964	INTRON tnc
3L	5517278	3L_5517278_SNP [dm3] 3L_5524178_SNP [dm6]	C	A	1.032e^-4	0.964	INTRON Lkr
3R	21593094	3R_21593094_SNP [dm3] 3R_25767372_SNP [dm6]	A	G	1.036e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	7920745	2R_7920745_SNP [dm3] 2R_12033240_SNP [dm6]	C	A	1.038e^-4	0.964	UTR_3_PRIME pds5 UPSTREAM CG8321
X	16904609	X_16904609_SNP [dm3] X_17010576_SNP [dm6]	C	T	1.039e^-4	0.964	INTRON CG45002
3L	874818	3L_874818_SNP [dm3] 3L_874818_SNP [dm6]	A	C	1.047e^-4	0.964	SYNONYMOUS_CODING CG32479	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9919382	3L_9919382_SNP [dm3] 3L_9926282_SNP [dm6]	A	G	1.055e^-4	0.964	INTRON CG34356	TF binding site mE1_TFBS_HSA
3L	12710700	3L_12710700_SNP [dm3] 3L_12717600_SNP [dm6]	C	A	1.058e^-4	0.964	INTERGENIC
3R	23301246	3R_23301246_SNP [dm3] 3R_27475524_SNP [dm6]	G	A	1.063e^-4	0.964	INTERGENIC
3R	6750731	3R_6750731_SNP [dm3] 3R_10925009_SNP [dm6]	T	C	1.068e^-4	0.964	INTERGENIC
3R	168229	3R_168229_SNP [dm3] 3R_4342507_SNP [dm6]	G	A	1.083e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3R	6720707	3R_6720707_SNP [dm3] 3R_10894985_SNP [dm6]	G	C	1.103e^-4	0.964	SYNONYMOUS_CODING Leash	TF binding site mE1_TFBS_chinmo
3R	306389	3R_306389_SNP [dm3] 3R_4480667_SNP [dm6]	A	T	1.110e^-4	0.964	UPSTREAM CG14651 INTERGENIC
2R	9455374	2R_9455374_SNP [dm3] 2R_13567869_SNP [dm6]	A	T	1.116e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
X	12195656	X_12195656_SNP [dm3] X_12301623_SNP [dm6]	C	G	1.117e^-4	0.964	INTRON Ten-a
3R	5655108	3R_5655108_SNP [dm3] 3R_9829386_SNP [dm6]	A	C	1.137e^-4	0.964	INTRON Teh1
3L	21899636	3L_21899636_SNP [dm3] 3L_21906536_SNP [dm6]	A	G	1.140e^-4	0.964	INTRON mub	TF binding site mE1_TFBS_HSA
2R	12256785	2R_12256785_SNP [dm3] 2R_16369280_SNP [dm6]	A	T	1.154e^-4	0.964	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	3278322	3L_3278322_SNP [dm3] 3L_3278322_SNP [dm6]	C	T	1.159e^-4	0.964	INTERGENIC
3L	3083555	3L_3083555_SNP [dm3] 3L_3083555_SNP [dm6]	G	A	1.161e^-4	0.964	INTRON CG11486	TF binding site mE1_TFBS_Trl
3R	25466710	3R_25466710_SNP [dm3] 3R_29640988_SNP [dm6]	G	A	1.170e^-4	0.964	SYNONYMOUS_CODING Dop1R2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10092529	3L_10092529_SNP [dm3] 3L_10099429_SNP [dm6]	C	T	1.174e^-4	0.964	SYNONYMOUS_CODING CG42826 INTRON dpr6
3R	308892	3R_308892_SNP [dm3] 3R_4483170_SNP [dm6]	T	C	1.180e^-4	0.964	SYNONYMOUS_CODING CG14651	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	882969	3L_882969_SNP [dm3] 3L_882969_SNP [dm6]	A	C	1.193e^-4	0.964	UPSTREAM CG13907 INTRON CG32479	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	12438187	3L_12438187_SNP [dm3] 3L_12445087_SNP [dm6]	G	A	1.193e^-4	0.964	INTERGENIC
2L	6291812	2L_6291812_SNP [dm3] 2L_6291812_SNP [dm6]	A	G	1.197e^-4	0.964	DOWNSTREAM Ddr INTRON Ddr	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	20536912	X_20536912_SNP [dm3] X_20665885_SNP [dm6]	T	C	1.204e^-4	0.964	INTRON CG1835	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	6202659	3L_6202659_SNP [dm3] 3L_6209559_SNP [dm6]	G	A	1.214e^-4	0.964	SYNONYMOUS_CODING LanA	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	3784638	2L_3784638_SNP [dm3] 2L_3784638_SNP [dm6]	T	C	1.229e^-4	0.964	UPSTREAM CG31960 DOWNSTREAM bowl INTERGENIC
X	2867956	X_2867956_SNP [dm3] X_2973923_SNP [dm6]	A	T	1.244e^-4	0.964	UPSTREAM rst INTRON kirre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2327620	2L_2327620_SNP [dm3] 2L_2327620_SNP [dm6]	A	G	1.251e^-4	0.964	INTRON CG9967 & 1 other
2L	16933486	2L_16933486_SNP [dm3] 2L_16933486_SNP [dm6]	T	C	1.254e^-4	0.964	INTERGENIC
3L	5274101	3L_5274101_SNP [dm3] 3L_5281001_SNP [dm6]	G	A	1.272e^-4	0.964	INTERGENIC
2L	1668122	2L_1668122_SNP [dm3] 2L_1668122_SNP [dm6]	C	T	1.299e^-4	0.964	INTRON chinmo	TF binding site BDTNP1_TFBS_dl
2R	16136784	2R_16136784_SNP [dm3] 2R_20249279_SNP [dm6]	A	G	1.308e^-4	0.964	SYNONYMOUS_CODING CG9864	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	19241936	X_19241936_SNP [dm3] X_19347903_SNP [dm6]	C	T	1.316e^-4	0.964	UTR_5_PRIME nAChRalpha7	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	11179099	3L_11179099_SNP [dm3] 3L_11185999_SNP [dm6]	C	G	1.325e^-4	0.964	INTRON GlcAT-P
2L	1917395	2L_1917395_SNP [dm3] 2L_1917395_SNP [dm6]	A	C	1.333e^-4	0.964	INTRON CG7337
3R	6109821	3R_6109821_SNP [dm3] 3R_10284099_SNP [dm6]	A	T	1.346e^-4	0.964	UPSTREAM CG43143 INTRON CG43143	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	22281672	3L_22281672_DEL [dm3] 3L_22288572_DEL [dm6]	TT	T	1.348e^-4	0.964	UPSTREAM Aats-ile & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14334388	3R_14334388_SNP [dm3] 3R_18508666_SNP [dm6]	G	T	1.350e^-4	0.964	INTRON fru
X	2349827	X_2349827_SNP [dm3] X_2455794_SNP [dm6]	G	T	1.353e^-4	0.964	INTRON boi
3R	10250963	3R_10250963_SNP [dm3] 3R_14425241_SNP [dm6]	G	A	1.363e^-4	0.964	INTRON cv-c
3L	11186113	3L_11186113_SNP [dm3] 3L_11193013_SNP [dm6]	G	T	1.369e^-4	0.964	INTRON GlcAT-P
2R	8778868	2R_8778868_SNP [dm3] 2R_12891363_SNP [dm6]	A	G	1.372e^-4	0.964	INTRON vg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	17148367	3L_17148367_SNP [dm3] 3L_17155267_SNP [dm6]	A	T	1.380e^-4	0.964	INTRON Rbp6	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	5544486	X_5544486_SNP [dm3] X_5650453_SNP [dm6]	C	G	1.380e^-4	0.964	DOWNSTREAM CG42265 INTERGENIC
X	7263150	X_7263150_SNP [dm3] X_7369117_SNP [dm6]	C	T	1.383e^-4	0.964	INTRON CG1677 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
2R	18455977	2R_18455977_SNP [dm3] 2R_22568472_SNP [dm6]	G	A	1.384e^-4	0.964	INTRON dnr1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	5566282	3R_5566282_SNP [dm3] 3R_9740560_SNP [dm6]	T	C	1.385e^-4	0.964	UPSTREAM Pnn & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	13876909	X_13876909_SNP [dm3] X_13982876_SNP [dm6]	A	G	1.389e^-4	0.964	INTRON mamo
3L	11178278	3L_11178278_SNP [dm3] 3L_11185178_SNP [dm6]	C	T	1.397e^-4	0.964	INTRON GlcAT-P
3L	7826377	3L_7826377_SNP [dm3] 3L_7833277_SNP [dm6]	T	A	1.398e^-4	0.964	UPSTREAM Pdp1 INTRON Pdp1
2L	16404730	2L_16404730_SNP [dm3] 2L_16404730_SNP [dm6]	C	A	1.405e^-4	0.964	SYNONYMOUS_CODING CG5888
2R	17685017	2R_17685017_SNP [dm3] 2R_21797512_SNP [dm6]	T	C	1.414e^-4	0.964	DOWNSTREAM CG34204 & 1 other INTERGENIC
3L	4407417	3L_4407417_DEL [dm3] 3L_4407417_DEL [dm6]	AA	A	1.419e^-4	0.964	INTRON DOR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	10630644	3R_10630644_SNP [dm3] 3R_14804922_SNP [dm6]	C	T	1.421e^-4	0.964	UTR_3_PRIME btsz DOWNSTREAM CG14857
3L	2188858	3L_2188858_SNP [dm3] 3L_2188858_SNP [dm6]	C	A	1.423e^-4	0.964	DOWNSTREAM CG5707 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	15384751	3L_15384751_SNP [dm3] 3L_15391651_SNP [dm6]	G	A	1.426e^-4	0.964	INTERGENIC
3L	10370723	3L_10370723_SNP [dm3] 3L_10377623_SNP [dm6]	C	T	1.429e^-4	0.964	INTERGENIC
3L	10797406	3L_10797406_SNP [dm3] 3L_10804306_SNP [dm6]	G	T	1.434e^-4	0.964	DOWNSTREAM CR44347 EXON CR44347
3R	14739052	3R_14739052_SNP [dm3] 3R_18913330_SNP [dm6]	T	A	1.440e^-4	0.964	UPSTREAM CG14291 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
X	13836088	X_13836088_SNP [dm3] X_13942055_SNP [dm6]	T	C	1.446e^-4	0.964	INTRON mamo
3R	27131721	3R_27131721_SNP [dm3] 3R_31305999_SNP [dm6]	C	G	1.452e^-4	0.964	UPSTREAM CG11340 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23301560	3R_23301560_SNP [dm3] 3R_27475838_SNP [dm6]	G	A	1.469e^-4	0.964	INTERGENIC
3L	20077885	3L_20077885_SNP [dm3] 3L_20084785_SNP [dm6]	T	C	1.473e^-4	0.964	INTRON sNPF-R
X	17504513	X_17504513_SNP [dm3] X_17610480_SNP [dm6]	A	G	1.507e^-4	0.964	INTERGENIC
3L	7547101	3L_7547101_INS [dm3] 3L_7554001_INS [dm6]	C	CG	1.510e^-4	0.964	INTERGENIC
2L	2322009	2L_2322009_SNP [dm3] 2L_2322009_SNP [dm6]	T	A	1.511e^-4	0.964	INTRON CG9967 & 1 other
2L	2322033	2L_2322033_SNP [dm3] 2L_2322033_SNP [dm6]	G	T	1.511e^-4	0.964	INTRON CG9967 & 1 other
2L	2322034	2L_2322034_SNP [dm3] 2L_2322034_SNP [dm6]	C	G	1.511e^-4	0.964	INTRON CG9967 & 1 other
3L	5272604	3L_5272604_SNP [dm3] 3L_5279504_SNP [dm6]	A	G	1.526e^-4	0.964	INTERGENIC
3L	4418569	3L_4418569_SNP [dm3] 3L_4418569_SNP [dm6]	G	T	1.538e^-4	0.964	UPSTREAM DOR INTRON DOR
2L	5111253	2L_5111253_SNP [dm3] 2L_5111253_SNP [dm6]	T	A	1.541e^-4	0.964	INTRON Msp300
2R	8352702	2R_8352702_SNP [dm3] 2R_12465197_SNP [dm6]	C	T	1.543e^-4	0.964	UTR_3_PRIME Lac DOWNSTREAM dgt5
2L	7693338	2L_7693338_DEL [dm3] 2L_7693338_DEL [dm6]	AA	A	1.553e^-4	0.964	UPSTREAM CG7025 DOWNSTREAM Tep2 INTRON CG43235
3R	9297014	3R_9297014_SNP [dm3] 3R_13471292_SNP [dm6]	A	T	1.554e^-4	0.964	INTERGENIC
X	18933468	X_18933468_SNP [dm3] X_19039435_SNP [dm6]	A	G	1.554e^-4	0.964	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	12281340	2L_12281340_SNP [dm3] 2L_12281340_SNP [dm6]	A	G	1.555e^-4	0.964	INTRON aret
2R	7900464	2R_7900464_SNP [dm3] 2R_12012959_SNP [dm6]	G	A	1.558e^-4	0.964	INTRON otk	TF binding site mE1_TFBS_Kr
2R	8778834	2R_8778834_DEL [dm3] 2R_12891329_DEL [dm6]	TAATGAT	T	1.561e^-4	0.964	INTRON vg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	23816597	3L_23816597_SNP [dm3] 3L_23823497_SNP [dm6]	A	T	1.578e^-4	0.964	INTERGENIC	transposable element FlyBase
3R	9305796	3R_9305796_SNP [dm3] 3R_13480074_SNP [dm6]	C	G	1.578e^-4	0.964	INTERGENIC
3L	22270711	3L_22270711_SNP [dm3] 3L_22277611_SNP [dm6]	A	C	1.590e^-4	0.964	UTR_5_PRIME srpk79D UPSTREAM srpk79D INTRON srpk79D	TF binding site mE1_TFBS_chinmo
3L	10912930	3L_10912930_SNP [dm3] 3L_10919830_SNP [dm6]	A	G	1.591e^-4	0.964	INTERGENIC
3R	14742164	3R_14742164_SNP [dm3] 3R_18916442_SNP [dm6]	C	T	1.591e^-4	0.964	INTRON Xrp1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc
3R	239438	3R_239438_SNP [dm3] 3R_4413716_SNP [dm6]	T	C	1.591e^-4	0.964	INTRON CG32944
2R	7910142	2R_7910142_SNP [dm3] 2R_12022637_SNP [dm6]	T	C	1.600e^-4	0.964	DOWNSTREAM CG8964 INTERGENIC
2L	1917406	2L_1917406_SNP [dm3] 2L_1917406_SNP [dm6]	G	T	1.603e^-4	0.964	INTRON CG7337
2L	1917440	2L_1917440_SNP [dm3] 2L_1917440_SNP [dm6]	C	T	1.603e^-4	0.964	INTRON CG7337
2R	17689153	2R_17689153_SNP [dm3] 2R_21801648_SNP [dm6]	C	A	1.605e^-4	0.964	UPSTREAM CG4386 INTERGENIC
X	20878362	X_20878362_SNP [dm3] X_21007335_SNP [dm6]	A	G	1.613e^-4	0.964	INTERGENIC
3R	5568701	3R_5568701_SNP [dm3] 3R_9742979_SNP [dm6]	C	G	1.617e^-4	0.964	UTR_3_PRIME CG34409 UPSTREAM CG31415 DOWNSTREAM Pnn
3L	11186002	3L_11186002_SNP [dm3] 3L_11192902_SNP [dm6]	C	T	1.621e^-4	0.964	INTRON GlcAT-P
X	7262780	X_7262780_SNP [dm3] X_7368747_SNP [dm6]	G	T	1.622e^-4	0.964	INTRON CG1677 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
3L	13288538	3L_13288538_SNP [dm3] 3L_13295438_SNP [dm6]	C	T	1.632e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18447133	2R_18447133_SNP [dm3] 2R_22559628_SNP [dm6]	C	A	1.659e^-4	0.964	INTRON px
2L	1917332	2L_1917332_SNP [dm3] 2L_1917332_SNP [dm6]	T	A	1.672e^-4	0.964	INTRON CG7337
2L	17798351	2L_17798351_SNP [dm3] 2L_17798351_SNP [dm6]	A	G	1.675e^-4	0.964	SYNONYMOUS_CODING CadN2	TF binding site mE1_TFBS_cad
2R	10515545	2R_10515545_SNP [dm3] 2R_14628040_SNP [dm6]	T	C	1.680e^-4	0.964	INTERGENIC
3L	8662324	3L_8662324_SNP [dm3] 3L_8669224_SNP [dm6]	C	A	1.680e^-4	0.964	INTERGENIC	regulatory region FlyBase TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
2R	18239287	2R_18239287_SNP [dm3] 2R_22351782_SNP [dm6]	C	A	1.690e^-4	0.964	INTRON Liprin-gamma
2R	7924517	2R_7924517_SNP [dm3] 2R_12037012_SNP [dm6]	T	C	1.694e^-4	0.964	NON_SYNONYMOUS_CODING CG43191 UPSTREAM 128up DOWNSTREAM CG8321	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	18922403	2R_18922403_SNP [dm3] 2R_23034880_SNP [dm6]	A	G	1.698e^-4	0.964	INTRON twi & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	25592752	3R_25592752_SNP [dm3] 3R_29767030_SNP [dm6]	T	C	1.705e^-4	0.964	SYNONYMOUS_CODING kay	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2322000	2L_2322000_SNP [dm3] 2L_2322000_SNP [dm6]	G	T	1.711e^-4	0.964	INTRON CG9967 & 1 other
3R	10306869	3R_10306869_SNP [dm3] 3R_14481147_SNP [dm6]	T	A	1.729e^-4	0.964	UTR_5_PRIME cv-c INTRON cv-c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26592875	3R_26592875_INS [dm3] 3R_30767153_INS [dm6]	G	GCT	1.735e^-4	0.964	INTRON zfh1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	16136940	2R_16136940_SNP [dm3] 2R_20249435_SNP [dm6]	C	T	1.738e^-4	0.964	SYNONYMOUS_CODING CG9864	TF binding site mE1_TFBS_cad
3R	27093983	3R_27093983_SNP [dm3] 3R_31268261_SNP [dm6]	A	T	1.746e^-4	0.964	INTRON ppk24	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19457318	2R_19457318_SNP [dm3] 2R_23569795_SNP [dm6]	T	A	1.753e^-4	0.964	INTRON apt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15083172	2L_15083172_SNP [dm3] 2L_15083172_SNP [dm6]	T	A	1.758e^-4	0.964	INTRON CG15270
2L	16712560	2L_16712560_SNP [dm3] 2L_16712560_SNP [dm6]	A	T	1.767e^-4	0.964	INTRON CG31808
3L	10092012	3L_10092012_INS [dm3] 3L_10098912_INS [dm6]	T	TGCTTTATG	1.769e^-4	0.964	UPSTREAM CG42825 DOWNSTREAM CG42826 INTRON dpr6
3L	10092017	3L_10092017_INS [dm3] 3L_10098917_INS [dm6]	G	GTG	1.769e^-4	0.964	UPSTREAM CG42825 DOWNSTREAM CG42826 INTRON dpr6
3L	18788183	3L_18788183_SNP [dm3] 3L_18795083_SNP [dm6]	A	G	1.770e^-4	0.964	INTRON ftz-f1
3L	1863369	3L_1863369_SNP [dm3] 3L_1863369_SNP [dm6]	T	C	1.781e^-4	0.964	SYNONYMOUS_CODING HBS1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	5573580	3R_5573580_SNP [dm3] 3R_9747858_SNP [dm6]	C	A	1.783e^-4	0.964	UPSTREAM PpD3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	5566271	3R_5566271_SNP [dm3] 3R_9740549_SNP [dm6]	G	T	1.796e^-4	0.964	UPSTREAM Pnn & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	20085887	3L_20085887_DEL [dm3] 3L_20092787_DEL [dm6]	CCCACTGTATGGGCTCAC...	C	1.804e^-4	0.964	INTERGENIC
2R	1143251	2R_1143251_SNP [dm3] 2R_5255746_SNP [dm6]	T	A	1.811e^-4	0.964	DOWNSTREAM CR41443 INTERGENIC
3R	26288323	3R_26288323_SNP [dm3] 3R_30462601_SNP [dm6]	T	C	1.814e^-4	0.964	UTR_5_PRIME CDase INTRON CDase
3L	8455404	3L_8455404_SNP [dm3] 3L_8462304_SNP [dm6]	T	G	1.815e^-4	0.964	INTRON Gug	TF binding site BDTNP1_TFBS_dl
2L	12283056	2L_12283056_SNP [dm3] 2L_12283056_SNP [dm6]	G	T	1.821e^-4	0.964	INTRON aret
2R	17764346	2R_17764346_SNP [dm3] 2R_21876841_SNP [dm6]	C	T	1.835e^-4	0.964	INTRON Fili
3L	18348886	3L_18348886_DEL [dm3] 3L_18355786_DEL [dm6]	TA	T	1.849e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
2R	5330810	2R_5330810_SNP [dm3] 2R_9443305_SNP [dm6]	G	A	1.851e^-4	0.964	INTRON ced-6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	8778842	2R_8778842_SNP [dm3] 2R_12891337_SNP [dm6]	A	C	1.853e^-4	0.964	INTRON vg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10095490	3L_10095490_DEL [dm3] 3L_10102390_DEL [dm6]	CCTGC	C	1.859e^-4	0.964	INTRON dpr6
3L	9919451	3L_9919451_SNP [dm3] 3L_9926351_SNP [dm6]	G	T	1.863e^-4	0.964	INTRON CG34356
3L	18817845	3L_18817845_SNP [dm3] 3L_18824745_SNP [dm6]	C	A	1.865e^-4	0.964	INTRON Cat
X	2868093	X_2868093_SNP [dm3] X_2974060_SNP [dm6]	G	A	1.869e^-4	0.964	UPSTREAM rst INTRON kirre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17517099	2L_17517099_SNP [dm3] 2L_17517099_SNP [dm6]	T	C	1.870e^-4	0.964	SYNONYMOUS_CODING Dhc36C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	17500681	2L_17500681_SNP [dm3] 2L_17500681_SNP [dm6]	T	G	1.870e^-4	0.964	UTR_5_PRIME CG6412 UPSTREAM Dhc36C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	2370484	X_2370484_SNP [dm3] X_2476451_SNP [dm6]	C	T	1.875e^-4	0.964	UTR_3_PRIME trol INTRON trol
3L	10424823	3L_10424823_SNP [dm3] 3L_10431723_SNP [dm6]	T	C	1.877e^-4	0.964	SYNONYMOUS_CODING Ir67b DOWNSTREAM Ir67c
2L	13106631	2L_13106631_SNP [dm3] 2L_13106631_SNP [dm6]	G	A	1.884e^-4	0.964	UPSTREAM CG5142 INTERGENIC
X	4294468	X_4294468_SNP [dm3] X_4400435_SNP [dm6]	A	T	1.904e^-4	0.964	INTRON CR32773
2L	10371561	2L_10371561_SNP [dm3] 2L_10371561_SNP [dm6]	G	T	1.905e^-4	0.964	SYNONYMOUS_CODING rho-5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10438200	2R_10438200_SNP [dm3] 2R_14550695_SNP [dm6]	C	G	1.910e^-4	0.964	INTRON ttv
3L	12438216	3L_12438216_DEL [dm3] 3L_12445116_DEL [dm6]	AC	T	1.915e^-4	0.964	INTERGENIC
2L	8904994	2L_8904994_SNP [dm3] 2L_8904994_SNP [dm6]	G	T	1.928e^-4	0.964	INTRON CG34398
3R	27194484	3R_27194484_SNP [dm3] 3R_31368762_SNP [dm6]	A	G	1.933e^-4	0.964	INTRON CG34347
3L	8874383	3L_8874383_SNP [dm3] 3L_8881283_SNP [dm6]	G	A	1.967e^-4	0.964	INTRON dally
2L	4055648	2L_4055648_SNP [dm3] 2L_4055648_SNP [dm6]	C	T	1.968e^-4	0.964	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3L	2993248	3L_2993248_SNP [dm3] 3L_2993248_SNP [dm6]	A	G	1.979e^-4	0.964	INTERGENIC
3R	10594709	3R_10594709_SNP [dm3] 3R_14768987_SNP [dm6]	G	T	1.981e^-4	0.964	INTRON jvl
3R	10594710	3R_10594710_SNP [dm3] 3R_14768988_SNP [dm6]	G	T	1.981e^-4	0.964	INTRON jvl
2R	8778863	2R_8778863_SNP [dm3] 2R_12891358_SNP [dm6]	G	T	1.984e^-4	0.964	INTRON vg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16640835	2R_16640835_SNP [dm3] 2R_20753330_SNP [dm6]	C	T	1.996e^-4	0.964	SYNONYMOUS_CODING CG34202	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	2926734	X_2926734_SNP [dm3] X_3032701_SNP [dm6]	C	A	2.005e^-4	0.964	INTRON kirre
3R	25848100	3R_25848100_SNP [dm3] 3R_30022378_SNP [dm6]	G	T	2.006e^-4	0.964	UTR_3_PRIME RpS28a UPSTREAM Axn & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	1626353	2L_1626353_SNP [dm3] 2L_1626353_SNP [dm6]	C	T	2.028e^-4	0.964	UPSTREAM CR44603 INTERGENIC
2L	4204237	2L_4204237_SNP [dm3] 2L_4204237_SNP [dm6]	G	A	2.032e^-4	0.964	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_sens
X	3383146	X_3383146_SNP [dm3] X_3489113_SNP [dm6]	C	T	2.032e^-4	0.964	UTR_3_PRIME CG10803 DOWNSTREAM CG10803 INTRON CR44999	TF binding site mE1_TFBS_HSA
3R	19557364	3R_19557364_SNP [dm3] 3R_23731642_SNP [dm6]	G	A	2.036e^-4	0.964	SYNONYMOUS_CODING Rpn9 DOWNSTREAM CG10365
2R	13499682	2R_13499682_SNP [dm3] 2R_17612177_SNP [dm6]	C	A	2.054e^-4	0.964	INTRON CG10936
2L	5085361	2L_5085361_SNP [dm3] 2L_5085361_SNP [dm6]	G	C	2.057e^-4	0.964	INTRON pgant5
3R	5565507	3R_5565507_SNP [dm3] 3R_9739785_SNP [dm6]	T	G	2.058e^-4	0.964	UTR_5_PRIME CG12950	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_zfh1
3L	838910	3L_838910_SNP [dm3] 3L_838910_SNP [dm6]	G	A	2.060e^-4	0.964	INTRON CG13887	TF binding site mE1_TFBS_inv
3L	6810783	3L_6810783_SNP [dm3] 3L_6817683_SNP [dm6]	T	G	2.062e^-4	0.964	INTERGENIC	regulatory region REDfly_CRMs
3L	11846330	3L_11846330_SNP [dm3] 3L_11853230_SNP [dm6]	G	C	2.063e^-4	0.964	INTRON CG44837
2L	15200510	2L_15200510_SNP [dm3] 2L_15200510_SNP [dm6]	C	T	2.070e^-4	0.964	UPSTREAM CG4168 INTERGENIC
3L	16870136	3L_16870136_SNP [dm3] 3L_16877036_SNP [dm6]	G	T	2.077e^-4	0.964	UPSTREAM CG32170 INTRON Lmpt	TF binding site mE1_TFBS_cad
2R	8778862	2R_8778862_SNP [dm3] 2R_12891357_SNP [dm6]	T	C	2.078e^-4	0.964	INTRON vg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	10900978	3R_10900978_SNP [dm3] 3R_15075256_SNP [dm6]	C	A	2.083e^-4	0.964	INTRON dpr9
3L	6089874	3L_6089874_SNP [dm3] 3L_6096774_SNP [dm6]	C	A	2.090e^-4	0.964	UPSTREAM Ets65A DOWNSTREAM loj INTERGENIC
3L	874627	3L_874627_SNP [dm3] 3L_874627_SNP [dm6]	C	T	2.092e^-4	0.964	SYNONYMOUS_CODING CG32479	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9098525	2L_9098525_SNP [dm3] 2L_9098525_SNP [dm6]	T	G	2.106e^-4	0.964	UPSTREAM CR44482 DOWNSTREAM CG31609 INTERGENIC
X	17925554	X_17925554_INS [dm3] X_18031521_INS [dm6]	T	TAAGCAAA	2.107e^-4	0.964	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5108858	2L_5108858_DEL [dm3] 2L_5108858_DEL [dm6]	AA	A	2.115e^-4	0.964	UTR_5_PRIME Msp300 INTRON Msp300	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3R	20915134	3R_20915134_SNP [dm3] 3R_25089412_SNP [dm6]	C	T	2.120e^-4	0.964	INTERGENIC
3L	10644851	3L_10644851_SNP [dm3] 3L_10651751_SNP [dm6]	C	T	2.128e^-4	0.964	INTRON CG32066
X	15138122	X_15138122_SNP [dm3] X_15244089_SNP [dm6]	C	T	2.137e^-4	0.964	NON_SYNONYMOUS_CODING PPYR1	TF binding site mE1_TFBS_HSA
3L	19218639	3L_19218639_INS [dm3] 3L_19225539_INS [dm6]	C	CGCATGTACTTT...	2.141e^-4	0.964	INTRON fz2	TF binding site mE1_TFBS_inv
3L	880454	3L_880454_SNP [dm3] 3L_880454_SNP [dm6]	C	G	2.146e^-4	0.964	SYNONYMOUS_CODING CG13907 INTRON CG32479	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
X	14572342	X_14572342_SNP [dm3] X_14678309_SNP [dm6]	T	G	2.146e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	23815133	3L_23815133_SNP [dm3] 3L_23822033_SNP [dm6]	C	G	2.158e^-4	0.964	INTERGENIC	transposable element FlyBase
3L	23873329	3L_23873329_SNP [dm3] 3L_23880229_SNP [dm6]	C	T	2.162e^-4	0.964	INTRON CG40470
3R	6015518	3R_6015518_SNP [dm3] 3R_10189796_SNP [dm6]	G	A	2.170e^-4	0.964	UPSTREAM CG12814 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	11102188	3L_11102188_SNP [dm3] 3L_11109088_SNP [dm6]	T	G	2.184e^-4	0.964	UPSTREAM CG7638 DOWNSTREAM CG12522 INTRON CG34012
X	20878283	X_20878283_SNP [dm3] X_21007256_SNP [dm6]	T	C	2.191e^-4	0.964	INTERGENIC
X	2868127	X_2868127_INS [dm3] X_2974094_INS [dm6]	A	AACTGCTTA	2.197e^-4	0.964	UPSTREAM rst INTRON kirre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17166582	3L_17166582_SNP [dm3] 3L_17173482_SNP [dm6]	T	A	2.202e^-4	0.964	INTRON Rbp6
3L	10090684	3L_10090684_SNP [dm3] 3L_10097584_SNP [dm6]	A	G	2.207e^-4	0.964	INTRON dpr6 & 1 other
2L	2264632	2L_2264632_SNP [dm3] 2L_2264632_SNP [dm6]	G	T	2.208e^-4	0.964	SYNONYMOUS_CODING CG34049 DOWNSTREAM CG4270
2R	16966482	2R_16966482_SNP [dm3] 2R_21078977_SNP [dm6]	A	T	2.227e^-4	0.964	INTRON Treh
2R	17687171	2R_17687171_SNP [dm3] 2R_21799666_SNP [dm6]	C	T	2.238e^-4	0.964	SYNONYMOUS_CODING CG4386 UPSTREAM CG18735
3R	23490526	3R_23490526_SNP [dm3] 3R_27664804_SNP [dm6]	G	A	2.241e^-4	0.964	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14280599	3L_14280599_SNP [dm3] 3L_14287499_SNP [dm6]	T	C	2.243e^-4	0.964	INTRON fz
2L	5140412	2L_5140412_SNP [dm3] 2L_5140412_SNP [dm6]	T	C	2.245e^-4	0.964	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9526113	2R_9526113_SNP [dm3] 2R_13638608_SNP [dm6]	T	G	2.255e^-4	0.964	INTRON fas	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9460523	3R_9460523_INS [dm3] 3R_13634801_INS [dm6]	C	CCCCCGTTTC	2.258e^-4	0.964	UTR_3_PRIME CG10841 DOWNSTREAM sqd	TF binding site BDTNP1_TFBS_twi
3R	25907683	3R_25907683_SNP [dm3] 3R_30081961_SNP [dm6]	G	C	2.262e^-4	0.964	INTRON sima
3L	8580653	3L_8580653_SNP [dm3] 3L_8587553_SNP [dm6]	A	T	2.263e^-4	0.964	SYNONYMOUS_CODING CG43078 UTR_5_PRIME CG43078	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10582730	3L_10582730_SNP [dm3] 3L_10589630_SNP [dm6]	A	T	2.275e^-4	0.964	INTRON A2bp1
2R	13886127	2R_13886127_SNP [dm3] 2R_17998622_SNP [dm6]	A	T	2.277e^-4	0.964	INTRON dpr13
3R	19926611	3R_19926611_SNP [dm3] 3R_24100889_SNP [dm6]	T	A	2.281e^-4	0.964	DOWNSTREAM Syx1A INTRON 4EHP
3L	11591002	3L_11591002_SNP [dm3] 3L_11597902_SNP [dm6]	G	A	2.292e^-4	0.964	INTRON CG7368
X	3382120	X_3382120_SNP [dm3] X_3488087_SNP [dm6]	G	A	2.307e^-4	0.964	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site BDTNP1_TFBS_dl
2L	16676335	2L_16676335_SNP [dm3] 2L_16676335_SNP [dm6]	G	T	2.326e^-4	0.964	UPSTREAM her INTRON Trpgamma
2L	11264860	2L_11264860_SNP [dm3] 2L_11264860_SNP [dm6]	G	T	2.327e^-4	0.964	NON_SYNONYMOUS_CODING cmet	TF binding site mE1_TFBS_sens
3R	7227202	3R_7227202_SNP [dm3] 3R_11401480_SNP [dm6]	G	A	2.329e^-4	0.964	UTR_3_PRIME pros
2R	7708945	2R_7708945_SNP [dm3] 2R_11821440_SNP [dm6]	C	T	2.329e^-4	0.964	INTERGENIC
2L	14245760	2L_14245760_SNP [dm3] 2L_14245760_SNP [dm6]	T	C	2.332e^-4	0.964	INTERGENIC
2L	22135027	2L_22135027_SNP [dm3] 2L_22135027_SNP [dm6]	A	T	2.334e^-4	0.964	START_GAINED CG42748 UTR_5_PRIME CG42748 INTRON CG42748	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9259055	3L_9259055_SNP [dm3] 3L_9265955_SNP [dm6]	T	A	2.342e^-4	0.964	INTRON GluRIB
3R	14137071	3R_14137071_SNP [dm3] 3R_18311349_SNP [dm6]	T	A	2.359e^-4	0.964	UPSTREAM PKD INTRON PKD	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	9299411	3L_9299411_SNP [dm3] 3L_9306311_SNP [dm6]	G	A	2.364e^-4	0.964	INTERGENIC
X	12155168	X_12155168_DEL [dm3] X_12261135_DEL [dm6]	AACCCACGACGAC...	T	2.366e^-4	0.964	INTRON Ten-a	TF binding site mE1_TFBS_sens
2L	15038081	2L_15038081_SNP [dm3] 2L_15038081_SNP [dm6]	G	A	2.369e^-4	0.964	SYNONYMOUS_CODING CIAPIN1 DOWNSTREAM yellow-c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_sens
3L	6261390	3L_6261390_SNP [dm3] 3L_6268290_SNP [dm6]	T	G	2.370e^-4	0.964	INTERGENIC
X	3384252	X_3384252_SNP [dm3] X_3490219_SNP [dm6]	T	A	2.383e^-4	0.964	UTR_3_PRIME CG10803 DOWNSTREAM Gas8 INTRON CR44999	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7443607	2L_7443607_SNP [dm3] 2L_7443607_SNP [dm6]	C	G	2.389e^-4	0.964	UTR_5_PRIME CG5973
3R	5565213	3R_5565213_SNP [dm3] 3R_9739491_SNP [dm6]	T	C	2.395e^-4	0.964	UTR_5_PRIME CG12950	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
X	3381570	X_3381570_SNP [dm3] X_3487537_SNP [dm6]	G	C	2.397e^-4	0.964	SPLICE_SITE_REGION CG10803 INTRON CR44999 & 1 other	TF binding site mE1_TFBS_sens
X	10024603	X_10024603_DEL [dm3] X_10130570_DEL [dm6]	TT	T	2.403e^-4	0.964	INTRON CR44894 & 1 other
3R	23159493	3R_23159493_SNP [dm3] 3R_27333771_SNP [dm6]	C	G	2.404e^-4	0.964	INTERGENIC
3L	20671339	3L_20671339_SNP [dm3] 3L_20678239_SNP [dm6]	G	A	2.413e^-4	0.964	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21356030	3R_21356030_SNP [dm3] 3R_25530308_SNP [dm6]	A	G	2.416e^-4	0.964	INTRON msi
X	12195680	X_12195680_SNP [dm3] X_12301647_SNP [dm6]	G	A	2.419e^-4	0.964	INTRON Ten-a
3L	20071531	3L_20071531_SNP [dm3] 3L_20078431_SNP [dm6]	A	G	2.424e^-4	0.964	INTRON sNPF-R
2L	4203619	2L_4203619_SNP [dm3] 2L_4203619_SNP [dm6]	T	C	2.431e^-4	0.964	NON_SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_sens
2L	5111308	2L_5111308_SNP [dm3] 2L_5111308_SNP [dm6]	G	C	2.439e^-4	0.964	INTRON Msp300
2L	5111352	2L_5111352_SNP [dm3] 2L_5111352_SNP [dm6]	A	T	2.439e^-4	0.964	INTRON Msp300
2L	5111355	2L_5111355_SNP [dm3] 2L_5111355_SNP [dm6]	C	G	2.439e^-4	0.964	INTRON Msp300
2R	15474476	2R_15474476_SNP [dm3] 2R_19586971_SNP [dm6]	T	C	2.450e^-4	0.964	UPSTREAM CG42878 INTRON sm
3L	20085812	3L_20085812_SNP [dm3] 3L_20092712_SNP [dm6]	G	A	2.452e^-4	0.964	INTERGENIC
3L	7226500	3L_7226500_DEL [dm3] 3L_7233400_DEL [dm6]	AAATAGAAATCATTCAAATA...	A	2.452e^-4	0.964	INTERGENIC
3L	14860105	3L_14860105_SNP [dm3] 3L_14867005_SNP [dm6]	G	A	2.455e^-4	0.964	INTRON CG17839
X	17925814	X_17925814_SNP [dm3] X_18031781_SNP [dm6]	T	C	2.471e^-4	0.964	INTRON Sh
3L	10090816	3L_10090816_SNP [dm3] 3L_10097716_SNP [dm6]	G	A	2.477e^-4	0.964	INTRON dpr6 & 1 other
X	3383546	X_3383546_DEL [dm3] X_3489513_DEL [dm6]	AA	A	2.482e^-4	0.964	UTR_3_PRIME CG10803 DOWNSTREAM CG10803 INTRON CR44999	TF binding site mE1_TFBS_HSA
X	20855222	X_20855222_INS [dm3] X_20984195_INS [dm6]	G	GG	2.487e^-4	0.964	UPSTREAM CG11666 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	16037695	3R_16037695_SNP [dm3] 3R_20211973_SNP [dm6]	A	T	2.490e^-4	0.964	INTRON Nlg4
2R	19356524	2R_19356524_SNP [dm3] 2R_23469001_SNP [dm6]	T	C	2.511e^-4	0.964	INTRON CG43795
3R	7229919	3R_7229919_SNP [dm3] 3R_11404197_SNP [dm6]	G	A	2.512e^-4	0.964	UTR_3_PRIME pros
2L	10971034	2L_10971034_SNP [dm3] 2L_10971034_SNP [dm6]	G	A	2.514e^-4	0.964	SYNONYMOUS_CODING YL-1 UPSTREAM CG33129	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	23240054	3L_23240054_SNP [dm3] 3L_23246954_SNP [dm6]	A	C	2.518e^-4	0.964	INTRON nAChRalpha4	TF binding site mE1_TFBS_zfh1
3L	10912831	3L_10912831_SNP [dm3] 3L_10919731_SNP [dm6]	T	A	2.520e^-4	0.964	INTERGENIC
3L	23816998	3L_23816998_SNP [dm3] 3L_23823898_SNP [dm6]	T	G	2.521e^-4	0.964	INTERGENIC
2R	10515582	2R_10515582_SNP [dm3] 2R_14628077_SNP [dm6]	T	A	2.524e^-4	0.964	INTERGENIC
3R	10630278	3R_10630278_INS [dm3] 3R_14804556_INS [dm6]	A	AGAAAGGTTCTCTA...	2.524e^-4	0.964	UTR_3_PRIME btsz DOWNSTREAM CG14857
X	3325187	X_3325187_SNP [dm3] X_3431154_SNP [dm6]	G	C	2.527e^-4	0.964	INTRON CR44999 & 1 other
2L	9058032	2L_9058032_SNP [dm3] 2L_9058032_SNP [dm6]	T	G	2.534e^-4	0.964	INTRON CG31708
3R	9311896	3R_9311896_SNP [dm3] 3R_13486174_SNP [dm6]	A	C	2.557e^-4	0.964	INTERGENIC
2L	5108861	2L_5108861_SNP [dm3] 2L_5108861_SNP [dm6]	T	G	2.562e^-4	0.964	START_GAINED Msp300 UTR_5_PRIME Msp300 INTRON Msp300	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
X	13836106	X_13836106_SNP [dm3] X_13942073_SNP [dm6]	G	A	2.564e^-4	0.964	INTRON mamo
3L	6612799	3L_6612799_SNP [dm3] 3L_6619699_SNP [dm6]	G	A	2.566e^-4	0.964	DOWNSTREAM CG8398 INTERGENIC
2R	17133455	2R_17133455_SNP [dm3] 2R_21245950_SNP [dm6]	A	G	2.589e^-4	0.964	INTRON ASPP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3L	10155961	3L_10155961_SNP [dm3] 3L_10162861_SNP [dm6]	G	T	2.592e^-4	0.964	INTRON dpr10
3R	21002984	3R_21002984_SNP [dm3] 3R_25177262_SNP [dm6]	G	T	2.593e^-4	0.964	INTRON lobo	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	9299417	3L_9299417_INS [dm3] 3L_9306317_INS [dm6]	A	AA	2.593e^-4	0.964	INTERGENIC
3L	854512	3L_854512_SNP [dm3] 3L_854512_SNP [dm6]	A	T	2.597e^-4	0.964	INTRON dpr20	TF binding site mE1_TFBS_cad
2R	6847679	2R_6847679_SNP [dm3] 2R_10960174_SNP [dm6]	T	C	2.602e^-4	0.964	INTERGENIC
3R	19044603	3R_19044603_SNP [dm3] 3R_23218881_SNP [dm6]	A	G	2.604e^-4	0.964	SYNONYMOUS_CODING cnc INTRON cnc	TF binding site mE1_TFBS_chinmo
3R	16994400	3R_16994400_INS [dm3] 3R_21168678_INS [dm6]	A	AA	2.609e^-4	0.964	UPSTREAM Snmp1 INTRON SNF4Agamma
3R	16795079	3R_16795079_SNP [dm3] 3R_20969357_SNP [dm6]	A	T	2.614e^-4	0.964	INTRON Atpalpha
3L	5757191	3L_5757191_SNP [dm3] 3L_5764091_SNP [dm6]	T	A	2.635e^-4	0.964	UPSTREAM snoRNA:684 & 1 other DOWNSTREAM snoRNA:Psi28S-1837b & 2 others INTRON CG10576	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	22140573	2L_22140573_SNP [dm3] 2L_22140573_SNP [dm6]	T	C	2.637e^-4	0.964	INTRON CG42748	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	4197333	3L_4197333_SNP [dm3] 3L_4197333_SNP [dm6]	T	C	2.642e^-4	0.964	SYNONYMOUS_CODING CG43367
2L	9550039	2L_9550039_SNP [dm3] 2L_9550039_SNP [dm6]	T	G	2.644e^-4	0.964	INTRON jp	TF binding site mE1_TFBS_cad
3L	8898332	3L_8898332_SNP [dm3] 3L_8905232_SNP [dm6]	C	T	2.658e^-4	0.964	UPSTREAM TrpA1 DOWNSTREAM mfr INTERGENIC
3L	967869	3L_967869_SNP [dm3] 3L_967869_SNP [dm6]	T	G	2.662e^-4	0.964	INTRON Glut1
X	21111277	X_21111277_INS [dm3] X_21240250_INS [dm6]	A	AA	2.664e^-4	0.964	INTRON CG32521
2R	1123094	2R_1123094_SNP [dm3] 2R_5235589_SNP [dm6]	G	A	2.668e^-4	0.964	INTRON Nipped-A	transposable element FlyBase
2R	1123101	2R_1123101_SNP [dm3] 2R_5235596_SNP [dm6]	A	T	2.668e^-4	0.964	INTRON Nipped-A	transposable element FlyBase
3R	17782865	3R_17782865_DEL [dm3] 3R_21957143_DEL [dm6]	TA	T	2.673e^-4	0.964	INTRON Eip93F
3R	5589452	3R_5589452_SNP [dm3] 3R_9763730_SNP [dm6]	G	A	2.673e^-4	0.964	UTR_5_PRIME CG8478 UPSTREAM CG8478 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3R	7408088	3R_7408088_SNP [dm3] 3R_11582366_SNP [dm6]	C	T	2.676e^-4	0.964	UPSTREAM wkd DOWNSTREAM CG5342 INTRON wkd	TF binding site BDTNP1_TFBS_dl
3R	5575853	3R_5575853_SNP [dm3] 3R_9750131_SNP [dm6]	T	G	2.686e^-4	0.964	DOWNSTREAM CG16908 INTRON PpD3
2L	1917456	2L_1917456_SNP [dm3] 2L_1917456_SNP [dm6]	C	G	2.705e^-4	0.964	INTRON CG7337
2R	2032107	2R_2032107_SNP [dm3] 2R_6144602_SNP [dm6]	C	G	2.709e^-4	0.964	INTRON EcR	TF binding site BDTNP1_TFBS_dl
3R	4877779	3R_4877779_SNP [dm3] 3R_9052057_SNP [dm6]	T	A	2.726e^-4	0.964	UTR_3_PRIME Mst85C UPSTREAM Kdm2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2R	1113654	2R_1113654_SNP [dm3] 2R_5226149_SNP [dm6]	G	A	2.726e^-4	0.964	INTRON Nipped-A
2L	4055655	2L_4055655_SNP [dm3] 2L_4055655_SNP [dm6]	T	G	2.735e^-4	0.964	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
X	4457398	X_4457398_SNP [dm3] X_4563365_SNP [dm6]	G	A	2.736e^-4	0.964	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	10629196	3R_10629196_SNP [dm3] 3R_14803474_SNP [dm6]	G	A	2.737e^-4	0.964	SYNONYMOUS_CODING CG14857 DOWNSTREAM btsz	TF binding site mE1_TFBS_cad
3R	4877786	3R_4877786_SNP [dm3] 3R_9052064_SNP [dm6]	G	A	2.737e^-4	0.964	UTR_3_PRIME Mst85C UPSTREAM Kdm2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	16784820	3L_16784820_SNP [dm3] 3L_16791720_SNP [dm6]	G	A	2.762e^-4	0.964	UTR_3_PRIME CG9674 INTRON CG9674	TF binding site mE1_TFBS_cad
2L	18479129	2L_18479129_SNP [dm3] 2L_18479129_SNP [dm6]	T	A	2.763e^-4	0.964	INTRON CG10283
2L	8944866	2L_8944866_SNP [dm3] 2L_8944866_SNP [dm6]	A	C	2.768e^-4	0.964	SYNONYMOUS_CODING C1GalTA	TF binding site mE1_TFBS_cad
3R	25466066	3R_25466066_SNP [dm3] 3R_29640344_SNP [dm6]	T	C	2.772e^-4	0.964	INTRON Dop1R2
X	15118062	X_15118062_SNP [dm3] X_15224029_SNP [dm6]	G	C	2.778e^-4	0.964	UPSTREAM CG43076 INTERGENIC
3L	2720430	3L_2720430_SNP [dm3] 3L_2720430_SNP [dm6]	T	C	2.783e^-4	0.964	SYNONYMOUS_CODING Mrtf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16933532	2L_16933532_SNP [dm3] 2L_16933532_SNP [dm6]	G	A	2.797e^-4	0.964	INTERGENIC
2R	898705	2R_898705_SNP [dm3] 2R_5011200_SNP [dm6]	C	T	2.842e^-4	0.964	INTRON Ir41a	transposable element FlyBase
3L	3514957	3L_3514957_SNP [dm3] 3L_3514957_SNP [dm6]	C	A	2.846e^-4	0.964	UPSTREAM Eip63E INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	10681475	3R_10681475_SNP [dm3] 3R_14855753_SNP [dm6]	G	A	2.849e^-4	0.964	INTRON btsz
X	8739620	X_8739620_SNP [dm3] X_8845587_SNP [dm6]	T	A	2.854e^-4	0.964	INTRON CG12075
2L	5111974	2L_5111974_SNP [dm3] 2L_5111974_SNP [dm6]	C	T	2.856e^-4	0.964	INTRON Msp300
3L	13234761	3L_13234761_SNP [dm3] 3L_13241661_SNP [dm6]	C	T	2.859e^-4	0.964	INTRON caps
3L	1934259	3L_1934259_SNP [dm3] 3L_1934259_SNP [dm6]	G	A	2.881e^-4	0.964	DOWNSTREAM Dbx INTRON CG5687	TF binding site mE1_TFBS_cad
2R	6845006	2R_6845006_SNP [dm3] 2R_10957501_SNP [dm6]	G	C	2.884e^-4	0.964	INTERGENIC
3L	1456075	3L_1456075_SNP [dm3] 3L_1456075_SNP [dm6]	T	A	2.888e^-4	0.964	INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	17695362	2R_17695362_SNP [dm3] 2R_21807857_SNP [dm6]	C	T	2.890e^-4	0.964	INTERGENIC
3R	20830615	3R_20830615_SNP [dm3] 3R_25004893_SNP [dm6]	C	G	2.894e^-4	0.964	INTRON tnc
3R	10682486	3R_10682486_SNP [dm3] 3R_14856764_SNP [dm6]	T	A	2.896e^-4	0.964	INTRON btsz
X	11519495	X_11519495_SNP [dm3] X_11625462_SNP [dm6]	C	T	2.897e^-4	0.964	INTRON Ptp10D
3R	9297603	3R_9297603_SNP [dm3] 3R_13471881_SNP [dm6]	C	A	2.930e^-4	0.964	INTERGENIC
2R	663863	2R_663863_SNP [dm3] 2R_4776358_SNP [dm6]	C	T	2.943e^-4	0.964	INTERGENIC	transposable element FlyBase
X	19250100	X_19250100_SNP [dm3] X_19356067_SNP [dm6]	T	C	2.944e^-4	0.964	INTRON kek5
3L	2047783	3L_2047783_SNP [dm3] 3L_2047783_SNP [dm6]	C	T	2.945e^-4	0.964	SYNONYMOUS_CODING sls
3R	16795078	3R_16795078_SNP [dm3] 3R_20969356_SNP [dm6]	C	A	2.956e^-4	0.964	INTRON Atpalpha
3R	21622334	3R_21622334_SNP [dm3] 3R_25796612_SNP [dm6]	T	A	2.964e^-4	0.964	EXON CR43847	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	1250814	3L_1250814_SNP [dm3] 3L_1250814_SNP [dm6]	T	A	2.965e^-4	0.964	UTR_5_PRIME CG9129 DOWNSTREAM Sac1	TF binding site mE1_TFBS_cad
2L	22957015	2L_22957015_SNP [dm3] 2L_23064283_SNP [dm6]	A	T	2.966e^-4	0.964	INTERGENIC
3R	25518976	3R_25518976_SNP [dm3] 3R_29693254_SNP [dm6]	A	G	2.970e^-4	0.964	INTRON dmrt99B	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6639642	3L_6639642_INS [dm3] 3L_6646542_INS [dm6]	A	TG	2.971e^-4	0.964	INTERGENIC
3L	2347483	3L_2347483_SNP [dm3] 3L_2347483_SNP [dm6]	A	T	2.971e^-4	0.964	INTERGENIC
X	20878409	X_20878409_SNP [dm3] X_21007382_SNP [dm6]	G	T	2.978e^-4	0.964	INTERGENIC
3R	5655095	3R_5655095_SNP [dm3] 3R_9829373_SNP [dm6]	T	A	2.978e^-4	0.964	INTRON Teh1
2R	16857723	2R_16857723_SNP [dm3] 2R_20970218_SNP [dm6]	G	A	2.986e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	14019504	X_14019504_SNP [dm3] X_14125471_SNP [dm6]	G	T	2.989e^-4	0.964	INTERGENIC
3L	4023771	3L_4023771_SNP [dm3] 3L_4023771_SNP [dm6]	G	A	2.992e^-4	0.964	SYNONYMOUS_CODING CG11594 DOWNSTREAM Mul1	TF binding site mE1_TFBS_chinmo
3L	18787627	3L_18787627_SNP [dm3] 3L_18794527_SNP [dm6]	T	C	2.994e^-4	0.964	INTRON ftz-f1
3R	25465934	3R_25465934_SNP [dm3] 3R_29640212_SNP [dm6]	G	A	3.011e^-4	0.964	INTRON Dop1R2
3L	18789412	3L_18789412_SNP [dm3] 3L_18796312_SNP [dm6]	T	A	3.012e^-4	0.964	INTRON ftz-f1
3R	5566478	3R_5566478_SNP [dm3] 3R_9740756_SNP [dm6]	A	G	3.018e^-4	0.964	UPSTREAM Pnn & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	873951	3L_873951_SNP [dm3] 3L_873951_SNP [dm6]	C	T	3.026e^-4	0.964	INTRON CG32479	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9324752	2L_9324752_SNP [dm3] 2L_9324752_SNP [dm6]	A	G	3.051e^-4	0.964	INTERGENIC
3L	12556361	3L_12556361_SNP [dm3] 3L_12563261_SNP [dm6]	T	C	3.063e^-4	0.964	INTRON sowah
3R	10550478	3R_10550478_SNP [dm3] 3R_14724756_SNP [dm6]	G	T	3.071e^-4	0.964	UPSTREAM kibra DOWNSTREAM CG7530 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
X	20877855	X_20877855_INS [dm3] X_21006828_INS [dm6]	A	ACACA	3.072e^-4	0.964	INTERGENIC
3L	8744599	3L_8744599_SNP [dm3] 3L_8751499_SNP [dm6]	C	T	3.072e^-4	0.964	EXON CR44527	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	12279600	2L_12279600_DEL [dm3] 2L_12279600_DEL [dm6]	GCCTCG	G	3.083e^-4	0.964	INTRON aret
3R	26376039	3R_26376039_SNP [dm3] 3R_30550317_SNP [dm6]	C	T	3.098e^-4	0.964	INTRON tmod
3R	17782872	3R_17782872_SNP [dm3] 3R_21957150_SNP [dm6]	A	T	3.099e^-4	0.964	INTRON Eip93F
3L	19901309	3L_19901309_DEL [dm3] 3L_19908209_DEL [dm6]	AGGGAAAAGACAGAGCGA...	A	3.102e^-4	0.964	INTRON Mi-2 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	2347490	3L_2347490_SNP [dm3] 3L_2347490_SNP [dm6]	C	T	3.112e^-4	0.964	INTERGENIC
3R	16795715	3R_16795715_SNP [dm3] 3R_20969993_SNP [dm6]	G	A	3.128e^-4	0.964	INTRON Atpalpha
3R	22057305	3R_22057305_SNP [dm3] 3R_26231583_SNP [dm6]	C	T	3.138e^-4	0.964	SYNONYMOUS_CODING CG12290	TF binding site mE1_TFBS_chinmo
3R	5565479	3R_5565479_SNP [dm3] 3R_9739757_SNP [dm6]	A	C	3.142e^-4	0.964	UTR_5_PRIME CG12950	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_zfh1
3R	6723118	3R_6723118_SNP [dm3] 3R_10897396_SNP [dm6]	A	C	3.154e^-4	0.964	UPSTREAM CR45577 DOWNSTREAM Leash & 1 other INTERGENIC
X	2476359	X_2476359_SNP [dm3] X_2582326_SNP [dm6]	A	G	3.155e^-4	0.964	UPSTREAM CG13759 INTRON CG13759	TF binding site BDTNP1_TFBS_dl
X	3383964	X_3383964_SNP [dm3] X_3489931_SNP [dm6]	G	A	3.172e^-4	0.964	UTR_3_PRIME CG10803 INTRON CR44999	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17443585	2R_17443585_SNP [dm3] 2R_21556080_SNP [dm6]	T	C	3.179e^-4	0.964	SYNONYMOUS_CODING Egfr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13650720	3R_13650720_INS [dm3] 3R_17824998_INS [dm6]	A	AA	3.183e^-4	0.964	INTRON tinc
X	9688662	X_9688662_SNP [dm3] X_9794629_SNP [dm6]	C	T	3.188e^-4	0.964	UPSTREAM CG32698 INTRON CG32698
3L	10898989	3L_10898989_SNP [dm3] 3L_10905889_SNP [dm6]	T	C	3.205e^-4	0.964	INTERGENIC
3L	1480339	3L_1480339_SNP [dm3] 3L_1480339_SNP [dm6]	G	A	3.215e^-4	0.964	INTRON stet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3R	27148948	3R_27148948_SNP [dm3] 3R_31323226_SNP [dm6]	A	T	3.219e^-4	0.964	INTRON CG34347
3R	239436	3R_239436_SNP [dm3] 3R_4413714_SNP [dm6]	A	T	3.233e^-4	0.964	INTRON CG32944
X	12195790	X_12195790_SNP [dm3] X_12301757_SNP [dm6]	A	G	3.233e^-4	0.964	INTRON Ten-a
2L	13175872	2L_13175872_SNP [dm3] 2L_13175872_SNP [dm6]	A	G	3.247e^-4	0.964	UTR_5_PRIME Sfmbt UPSTREAM CG43925	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	5058942	2L_5058942_SNP [dm3] 2L_5058942_SNP [dm6]	T	A	3.250e^-4	0.964	SYNONYMOUS_CODING Rpn11 UPSTREAM CG31918	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	6034999	3R_6034999_SNP [dm3] 3R_10209277_SNP [dm6]	T	C	3.254e^-4	0.964	INTRON Syn & 1 other
2L	488850	2L_488850_SNP [dm3] 2L_488850_SNP [dm6]	T	C	3.255e^-4	0.964	INTRON ush	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10515032	2R_10515032_SNP [dm3] 2R_14627527_SNP [dm6]	G	A	3.258e^-4	0.964	INTERGENIC
3L	15675144	3L_15675144_SNP [dm3] 3L_15682044_SNP [dm6]	C	T	3.265e^-4	0.964	SYNONYMOUS_CODING CG7579 DOWNSTREAM CG7304	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	27147042	3R_27147042_SNP [dm3] 3R_31321320_SNP [dm6]	A	G	3.266e^-4	0.964	INTRON CG34347
2L	5107231	2L_5107231_SNP [dm3] 2L_5107231_SNP [dm6]	G	A	3.281e^-4	0.964	INTRON Msp300	TF binding site mE1_TFBS_Trl
3R	22008453	3R_22008453_INS [dm3] 3R_26182731_INS [dm6]	A	AA	3.282e^-4	0.964	INTRON CG31323
3R	9286448	3R_9286448_SNP [dm3] 3R_13460726_SNP [dm6]	C	T	3.291e^-4	0.964	INTRON CR17025 & 1 other
3R	21745167	3R_21745167_SNP [dm3] 3R_25919445_SNP [dm6]	A	G	3.295e^-4	0.964	SYNONYMOUS_CODING CG42235 DOWNSTREAM CG42235	TF binding site mE1_TFBS_sens
3L	10376282	3L_10376282_SNP [dm3] 3L_10383182_SNP [dm6]	T	A	3.296e^-4	0.964	INTERGENIC
3L	4965030	3L_4965030_SNP [dm3] 3L_4965030_SNP [dm6]	T	C	3.302e^-4	0.964	INTRON Con
3L	11914728	3L_11914728_SNP [dm3] 3L_11921628_SNP [dm6]	C	T	3.308e^-4	0.964	SYNONYMOUS_CODING CG11588 DOWNSTREAM CG5718 INTRON CG44837	TF binding site mE1_TFBS_cad
2L	15163979	2L_15163979_SNP [dm3] 2L_15163979_SNP [dm6]	A	C	3.327e^-4	0.964	INTRON CG4168
3R	19652022	3R_19652022_SNP [dm3] 3R_23826300_SNP [dm6]	C	T	3.330e^-4	0.964	UPSTREAM snRNA:U1:95Cc & 1 other INTRON CG34355	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	15117972	X_15117972_INS [dm3] X_15223939_INS [dm6]	C	CAGACACAC	3.330e^-4	0.964	UPSTREAM CG43076 INTERGENIC
2R	19929696	2R_19929696_SNP [dm3] 2R_24042173_SNP [dm6]	C	T	3.333e^-4	0.964	SYNONYMOUS_CODING IntS1	TF binding site mE1_TFBS_chinmo
2R	4838293	2R_4838293_SNP [dm3] 2R_8950788_SNP [dm6]	G	A	3.333e^-4	0.964	UTR_5_PRIME CG8229 & 1 other UPSTREAM Tom7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	25466503	3R_25466503_SNP [dm3] 3R_29640781_SNP [dm6]	A	G	3.338e^-4	0.964	SYNONYMOUS_CODING Dop1R2	TF binding site mE1_TFBS_chinmo
2L	5400468	2L_5400468_SNP [dm3] 2L_5400468_SNP [dm6]	G	A	3.341e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10550436	3R_10550436_SNP [dm3] 3R_14724714_SNP [dm6]	A	G	3.342e^-4	0.964	UPSTREAM kibra DOWNSTREAM CG7530 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
X	20877862	X_20877862_SNP [dm3] X_21006835_SNP [dm6]	A	T	3.349e^-4	0.964	INTERGENIC
X	12604225	X_12604225_SNP [dm3] X_12710192_SNP [dm6]	G	A	3.362e^-4	0.964	INTRON Smr
3R	14985798	3R_14985798_DEL [dm3] 3R_19160076_DEL [dm6]	TT	T	3.377e^-4	0.964	UTR_3_PRIME nos UPSTREAM CG11779 DOWNSTREAM CG42358
3L	10090664	3L_10090664_SNP [dm3] 3L_10097564_SNP [dm6]	A	T	3.390e^-4	0.964	INTRON dpr6 & 1 other
3L	3059171	3L_3059171_SNP [dm3] 3L_3059171_SNP [dm6]	C	T	3.391e^-4	0.964	INTRON CG32486	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl mE1_TFBS_zfh1
3R	310034	3R_310034_SNP [dm3] 3R_4484312_SNP [dm6]	T	G	3.400e^-4	0.964	UPSTREAM Fip1 DOWNSTREAM CG14651 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1 transposable element FlyBase
X	13983883	X_13983883_SNP [dm3] X_14089850_SNP [dm6]	A	C	3.408e^-4	0.964	INTERGENIC
2L	18479399	2L_18479399_SNP [dm3] 2L_18479399_SNP [dm6]	G	T	3.415e^-4	0.964	INTRON CG10283
2L	16933528	2L_16933528_SNP [dm3] 2L_16933528_SNP [dm6]	C	G	3.416e^-4	0.964	INTERGENIC
2L	2357993	2L_2357993_DEL [dm3] 2L_2357993_DEL [dm6]	ACA	A	3.418e^-4	0.964	UTR_3_PRIME eys UPSTREAM CG9967	TF binding site mE1_TFBS_HSA
2R	13360524	2R_13360524_SNP [dm3] 2R_17473019_SNP [dm6]	T	A	3.428e^-4	0.964	INTRON qkr54B
2R	9530860	2R_9530860_SNP [dm3] 2R_13643355_SNP [dm6]	A	G	3.429e^-4	0.964	INTRON fas
2R	13770110	2R_13770110_SNP [dm3] 2R_17882605_SNP [dm6]	A	C	3.434e^-4	0.964	UPSTREAM CG30110 INTRON Elk
3R	18323849	3R_18323849_DEL [dm3] 3R_22498127_DEL [dm6]	CA	C	3.437e^-4	0.964	INTRON Octbeta1R
X	15138121	X_15138121_SNP [dm3] X_15244088_SNP [dm6]	T	G	3.437e^-4	0.964	SYNONYMOUS_CODING PPYR1	TF binding site mE1_TFBS_HSA
3L	18280893	3L_18280893_SNP [dm3] 3L_18287793_SNP [dm6]	T	C	3.446e^-4	0.964	INTERGENIC
3L	16792133	3L_16792133_SNP [dm3] 3L_16799033_SNP [dm6]	A	T	3.450e^-4	0.964	INTRON CG9674
2L	3861582	2L_3861582_SNP [dm3] 2L_3861582_SNP [dm6]	A	G	3.451e^-4	0.964	INTRON CR44078	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3R	13897784	3R_13897784_SNP [dm3] 3R_18072062_SNP [dm6]	A	T	3.456e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4342417	3L_4342417_SNP [dm3] 3L_4342417_SNP [dm6]	G	A	3.459e^-4	0.964	INTRON Cip4
3L	3059037	3L_3059037_SNP [dm3] 3L_3059037_SNP [dm6]	G	A	3.464e^-4	0.964	INTRON CG32486	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_zfh1
2L	14373796	2L_14373796_SNP [dm3] 2L_14373796_SNP [dm6]	A	T	3.465e^-4	0.964	INTERGENIC
2R	6281636	2R_6281636_SNP [dm3] 2R_10394131_SNP [dm6]	A	G	3.465e^-4	0.964	INTRON CG42732	TF binding site BDTNP1_TFBS_twi
3L	3973320	3L_3973320_SNP [dm3] 3L_3973320_SNP [dm6]	G	A	3.467e^-4	0.964	SYNONYMOUS_CODING CG43915	regulatory region REDfly_CRMs
2R	15944839	2R_15944839_SNP [dm3] 2R_20057334_SNP [dm6]	T	A	3.482e^-4	0.964	UPSTREAM CR44631 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7899769	2R_7899769_SNP [dm3] 2R_12012264_SNP [dm6]	T	C	3.485e^-4	0.964	INTRON otk
2L	17186513	2L_17186513_SNP [dm3] 2L_17186513_SNP [dm6]	C	T	3.486e^-4	0.964	INTERGENIC
2L	17432129	2L_17432129_SNP [dm3] 2L_17432129_SNP [dm6]	T	A	3.497e^-4	0.964	INTRON Dif
2R	16182132	2R_16182132_DEL [dm3] 2R_20294627_DEL [dm6]	ATACGGATGA	A	3.497e^-4	0.964	EXON CR44639
3R	6723105	3R_6723105_SNP [dm3] 3R_10897383_SNP [dm6]	G	A	3.499e^-4	0.964	UPSTREAM CR45577 DOWNSTREAM Leash & 1 other INTERGENIC
2L	5266804	2L_5266804_SNP [dm3] 2L_5266804_SNP [dm6]	C	T	3.499e^-4	0.964	SYNONYMOUS_CODING Cyp4ac2 DOWNSTREAM Cyp4ac1 INTRON tkv
3R	18323876	3R_18323876_SNP [dm3] 3R_22498154_SNP [dm6]	G	A	3.503e^-4	0.964	INTRON Octbeta1R
3R	7405442	3R_7405442_SNP [dm3] 3R_11579720_SNP [dm6]	A	C	3.507e^-4	0.964	SYNONYMOUS_CODING CG5342 UPSTREAM CG6790
2R	19398372	2R_19398372_SNP [dm3] 2R_23510849_SNP [dm6]	A	T	3.507e^-4	0.964	DOWNSTREAM CG3906 INTERGENIC	TF binding site mE1_TFBS_cad
3R	10550621	3R_10550621_SNP [dm3] 3R_14724899_SNP [dm6]	T	A	3.511e^-4	0.964	UTR_3_PRIME CG7530 UPSTREAM kibra	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
2R	7616587	2R_7616587_SNP [dm3] 2R_11729082_SNP [dm6]	C	T	3.515e^-4	0.964	INTERGENIC
3L	2722878	3L_2722878_SNP [dm3] 3L_2722878_SNP [dm6]	G	A	3.524e^-4	0.964	SYNONYMOUS_CODING Mrtf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16050964	X_16050964_SNP [dm3] X_16156931_SNP [dm6]	C	G	3.525e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	18761378	2L_18761378_SNP [dm3] 2L_18761378_SNP [dm6]	C	T	3.535e^-4	0.964	INTERGENIC
3R	5576732	3R_5576732_SNP [dm3] 3R_9751010_SNP [dm6]	T	C	3.536e^-4	0.964	UTR_3_PRIME PpD3 DOWNSTREAM CG16908
2R	13333678	2R_13333678_SNP [dm3] 2R_17446173_SNP [dm6]	G	T	3.544e^-4	0.964	SYNONYMOUS_CODING mthl4
3R	14711321	3R_14711321_SNP [dm3] 3R_18885599_SNP [dm6]	C	G	3.545e^-4	0.964	INTERGENIC
X	22267220	X_22267220_DEL [dm3] X_22865384_DEL [dm6]	CC	C	3.547e^-4	0.964	INTRON CG42346
2R	11972698	2R_11972698_SNP [dm3] 2R_16085193_SNP [dm6]	A	G	3.554e^-4	0.964	SYNONYMOUS_CODING Dg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	14334904	3R_14334904_INS [dm3] 3R_18509182_INS [dm6]	A	AC	3.559e^-4	0.964	INTRON fru
3R	14682466	3R_14682466_SNP [dm3] 3R_18856744_SNP [dm6]	C	T	3.570e^-4	0.964	INTERGENIC
3R	280099	3R_280099_SNP [dm3] 3R_4454377_SNP [dm6]	G	A	3.571e^-4	0.964	DOWNSTREAM CR43629 INTRON CG31522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	4714406	3L_4714406_SNP [dm3] 3L_4714406_SNP [dm6]	T	A	3.574e^-4	0.964	INTRON RhoGEF64C
3L	4714418	3L_4714418_DEL [dm3] 3L_4714418_DEL [dm6]	TTTAAGA	T	3.574e^-4	0.964	INTRON RhoGEF64C
3R	18843239	3R_18843239_SNP [dm3] 3R_23017517_SNP [dm6]	T	C	3.576e^-4	0.964	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	13360544	2R_13360544_SNP [dm3] 2R_17473039_SNP [dm6]	T	C	3.576e^-4	0.964	INTRON qkr54B
2R	8779597	2R_8779597_SNP [dm3] 2R_12892092_SNP [dm6]	A	C	3.588e^-4	0.964	INTRON vg	TF binding site mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3R	14742191	3R_14742191_DEL [dm3] 3R_18916469_DEL [dm6]	ATGTA	A	3.593e^-4	0.964	INTRON Xrp1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc
3R	14742213	3R_14742213_SNP [dm3] 3R_18916491_SNP [dm6]	T	C	3.593e^-4	0.964	INTRON Xrp1	TF binding site mE1_TFBS_cnc
3R	10057328	3R_10057328_SNP [dm3] 3R_14231606_SNP [dm6]	A	T	3.596e^-4	0.964	INTERGENIC
3L	12438317	3L_12438317_SNP [dm3] 3L_12445217_SNP [dm6]	T	A	3.600e^-4	0.964	INTERGENIC
3R	12790801	3R_12790801_SNP [dm3] 3R_16965079_SNP [dm6]	C	T	3.600e^-4	0.964	INTRON Abd-B
X	8217198	X_8217198_SNP [dm3] X_8323165_SNP [dm6]	A	C	3.601e^-4	0.964	INTRON nAChRalpha3
3L	7284222	3L_7284222_SNP [dm3] 3L_7291122_SNP [dm6]	C	T	3.611e^-4	0.964	INTRON unc-13-4A
3L	3031712	3L_3031712_SNP [dm3] 3L_3031712_SNP [dm6]	A	G	3.620e^-4	0.964	INTERGENIC
X	9700568	X_9700568_SNP [dm3] X_9806535_SNP [dm6]	A	G	3.624e^-4	0.964	INTRON CG32698
3R	6188605	3R_6188605_SNP [dm3] 3R_10362883_SNP [dm6]	C	A	3.625e^-4	0.964	UTR_3_PRIME Rfx	TF binding site mE1_TFBS_cad
3L	1039784	3L_1039784_SNP [dm3] 3L_1039784_SNP [dm6]	C	G	3.631e^-4	0.964	INTRON bab1	TF binding site mE1_TFBS_cad
3L	14532279	3L_14532279_SNP [dm3] 3L_14539179_SNP [dm6]	T	C	3.632e^-4	0.964	INTRON Mpcp
3R	26288134	3R_26288134_SNP [dm3] 3R_30462412_SNP [dm6]	G	T	3.653e^-4	0.964	INTRON CDase	TF binding site BDTNP1_TFBS_da
3L	13461704	3L_13461704_SNP [dm3] 3L_13468604_SNP [dm6]	C	A	3.657e^-4	0.964	SYNONYMOUS_CODING CG10089
2L	18766574	2L_18766574_SNP [dm3] 2L_18766574_SNP [dm6]	C	G	3.657e^-4	0.964	INTRON ham
X	3383948	X_3383948_SNP [dm3] X_3489915_SNP [dm6]	G	A	3.660e^-4	0.964	UTR_3_PRIME CG10803 INTRON CR44999	TF binding site mE1_TFBS_HSA
2L	20385445	2L_20385445_SNP [dm3] 2L_20385445_SNP [dm6]	T	A	3.668e^-4	0.964	UTR_3_PRIME CG10947 DOWNSTREAM CG10947
3L	3073156	3L_3073156_SNP [dm3] 3L_3073156_SNP [dm6]	G	A	3.675e^-4	0.964	UTR_5_PRIME CG11486 UPSTREAM CG11486	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2L	16933534	2L_16933534_SNP [dm3] 2L_16933534_SNP [dm6]	A	C	3.702e^-4	0.964	INTERGENIC
3L	3083529	3L_3083529_SNP [dm3] 3L_3083529_SNP [dm6]	A	G	3.714e^-4	0.964	INTRON CG11486	TF binding site mE1_TFBS_Trl
2R	19045212	2R_19045212_SNP [dm3] 2R_23157689_SNP [dm6]	T	A	3.732e^-4	0.964	UTR_3_PRIME CG13545 INTRON CG9899
3L	1076225	3L_1076225_SNP [dm3] 3L_1076225_SNP [dm6]	G	T	3.733e^-4	0.964	INTRON bab1
3R	27080721	3R_27080721_SNP [dm3] 3R_31254999_SNP [dm6]	G	A	3.738e^-4	0.964	UPSTREAM spn-F & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	17166549	3L_17166549_DEL [dm3] 3L_17173449_DEL [dm6]	AGGATAACATTATT...	A	3.741e^-4	0.964	INTRON Rbp6
3L	11603532	3L_11603532_SNP [dm3] 3L_11610432_SNP [dm6]	T	G	3.743e^-4	0.964	UPSTREAM CG6091 DOWNSTREAM Muc68Ca & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3L	20278478	3L_20278478_DEL [dm3] 3L_20285378_DEL [dm6]	GCCACTTGG	G	3.754e^-4	0.964	INTRON gogo
3L	6089677	3L_6089677_SNP [dm3] 3L_6096577_SNP [dm6]	G	T	3.756e^-4	0.964	DOWNSTREAM loj INTERGENIC
3R	12277898	3R_12277898_SNP [dm3] 3R_16452176_SNP [dm6]	T	G	3.757e^-4	0.964	SYNONYMOUS_CODING Pak3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	8026722	3R_8026722_SNP [dm3] 3R_12201000_SNP [dm6]	G	A	3.771e^-4	0.964	INTERGENIC
X	13983657	X_13983657_SNP [dm3] X_14089624_SNP [dm6]	A	T	3.773e^-4	0.964	INTERGENIC
X	6295277	X_6295277_SNP [dm3] X_6401244_SNP [dm6]	T	C	3.814e^-4	0.964	INTERGENIC
3R	6091038	3R_6091038_SNP [dm3] 3R_10265316_SNP [dm6]	A	T	3.819e^-4	0.964	INTRON CG43143	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	18533399	2L_18533399_DEL [dm3] 2L_18533399_DEL [dm6]	AGATGATGATGATGCTGGT...	A	3.846e^-4	0.964	UTR_3_PRIME Pde11	TF binding site mE1_TFBS_cad
2R	8778886	2R_8778886_SNP [dm3] 2R_12891381_SNP [dm6]	G	C	3.846e^-4	0.964	INTRON vg	TF binding site mE1_TFBS_cad
2R	16136994	2R_16136994_SNP [dm3] 2R_20249489_SNP [dm6]	T	G	3.851e^-4	0.964	SYNONYMOUS_CODING CG9864	TF binding site mE1_TFBS_cad
X	17933791	X_17933791_SNP [dm3] X_18039758_SNP [dm6]	G	A	3.853e^-4	0.964	UTR_5_PRIME Sh UPSTREAM Sh
3L	10092016	3L_10092016_SNP [dm3] 3L_10098916_SNP [dm6]	A	T	3.855e^-4	0.964	UPSTREAM CG42825 DOWNSTREAM CG42826 INTRON dpr6
3L	6785521	3L_6785521_SNP [dm3] 3L_6792421_SNP [dm6]	T	C	3.863e^-4	0.964	SYNONYMOUS_CODING vvl UTR_3_PRIME vvl	TF binding site mE1_TFBS_chinmo
2L	14248744	2L_14248744_SNP [dm3] 2L_14248744_SNP [dm6]	T	C	3.880e^-4	0.964	INTERGENIC
3R	24814748	3R_24814748_SNP [dm3] 3R_28989026_SNP [dm6]	G	A	3.889e^-4	0.964	INTERGENIC
3R	2252603	3R_2252603_SNP [dm3] 3R_6426881_SNP [dm6]	T	C	3.894e^-4	0.964	INTRON gpp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1672540	2L_1672540_SNP [dm3] 2L_1672540_SNP [dm6]	G	T	3.902e^-4	0.964	INTRON chinmo
3L	14888946	3L_14888946_SNP [dm3] 3L_14895846_SNP [dm6]	C	A	3.902e^-4	0.964	INTERGENIC
3R	26128408	3R_26128408_DEL [dm3] 3R_30302686_DEL [dm6]	GTAGTGG	G	3.910e^-4	0.964	INTRON hdc
2R	15225871	2R_15225871_INS [dm3] 2R_19338366_INS [dm6]	G	GTTTGCTGCGGTTCGAGGCC...	3.911e^-4	0.964	INTRON Rgk1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	4828800	3L_4828800_SNP [dm3] 3L_4828800_SNP [dm6]	A	T	3.926e^-4	0.964	UTR_3_PRIME Aats-leu DOWNSTREAM CG13708
3L	17117172	3L_17117172_DEL [dm3] 3L_17124072_DEL [dm6]	CGGATGGAT	C	3.934e^-4	0.964	INTRON Rbp6	TF binding site BDTNP1_TFBS_da
3R	6309627	3R_6309627_SNP [dm3] 3R_10483905_SNP [dm6]	T	A	3.936e^-4	0.964	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	1089597	2R_1089597_SNP [dm3] 2R_5202092_SNP [dm6]	G	A	3.940e^-4	0.964	INTRON Nipped-A
3R	6769570	3R_6769570_SNP [dm3] 3R_10943848_SNP [dm6]	A	C	3.944e^-4	0.964	INTERGENIC
2L	7022199	2L_7022199_SNP [dm3] 2L_7022199_SNP [dm6]	T	C	3.950e^-4	0.964	SYNONYMOUS_CODING Pcp INTRON ade3
3R	17242185	3R_17242185_SNP [dm3] 3R_21416463_SNP [dm6]	G	C	3.950e^-4	0.964	INTRON lbl
2R	15711837	2R_15711837_SNP [dm3] 2R_19824332_SNP [dm6]	T	C	3.951e^-4	0.964	INTERGENIC
2L	5570145	2L_5570145_SNP [dm3] 2L_5570145_SNP [dm6]	G	A	3.959e^-4	0.964	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	5868288	3L_5868288_SNP [dm3] 3L_5875188_SNP [dm6]	T	G	3.963e^-4	0.964	NON_SYNONYMOUS_CODING CG18586
X	20877878	X_20877878_SNP [dm3] X_21006851_SNP [dm6]	T	C	3.970e^-4	0.964	INTERGENIC
3R	14774244	3R_14774244_INS [dm3] 3R_18948522_INS [dm6]	A	AA	3.974e^-4	0.964	INTRON CG42613
3L	11102904	3L_11102904_SNP [dm3] 3L_11109804_SNP [dm6]	C	G	4.003e^-4	0.964	UTR_5_PRIME CG7638 UPSTREAM CG34012	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	22239224	X_22239224_SNP [dm3] X_22837388_SNP [dm6]	C	T	4.007e^-4	0.964	INTRON fog & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	17925023	X_17925023_SNP [dm3] X_18030990_SNP [dm6]	T	C	4.012e^-4	0.964	INTRON Sh
3R	27148572	3R_27148572_SNP [dm3] 3R_31322850_SNP [dm6]	C	A	4.012e^-4	0.964	INTRON CG34347
3R	6015291	3R_6015291_SNP [dm3] 3R_10189569_SNP [dm6]	T	A	4.016e^-4	0.964	UTR_5_PRIME CG12814	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	10435104	3R_10435104_SNP [dm3] 3R_14609382_SNP [dm6]	T	A	4.018e^-4	0.964	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	10465196	3L_10465196_SNP [dm3] 3L_10472096_SNP [dm6]	A	T	4.034e^-4	0.964	INTERGENIC
X	20813615	X_20813615_SNP [dm3] X_20942588_SNP [dm6]	C	T	4.034e^-4	0.964	INTERGENIC
3L	15067321	3L_15067321_SNP [dm3] 3L_15074221_SNP [dm6]	G	C	4.036e^-4	0.964	INTRON cp309	TF binding site mE1_TFBS_cad
2L	9290974	2L_9290974_SNP [dm3] 2L_9290974_SNP [dm6]	G	C	4.037e^-4	0.964	INTRON Ggamma30A
2R	19881712	2R_19881712_SNP [dm3] 2R_23994189_SNP [dm6]	T	A	4.047e^-4	0.964	INTRON CG3860
2L	3327049	2L_3327049_SNP [dm3] 2L_3327049_SNP [dm6]	G	T	4.050e^-4	0.964	UPSTREAM CG33282 DOWNSTREAM CG33281 INTERGENIC
3R	25466830	3R_25466830_SNP [dm3] 3R_29641108_SNP [dm6]	G	A	4.058e^-4	0.964	SYNONYMOUS_CODING Dop1R2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14101260	2R_14101260_SNP [dm3] 2R_18213755_SNP [dm6]	T	C	4.065e^-4	0.964	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	4965029	3L_4965029_SNP [dm3] 3L_4965029_SNP [dm6]	A	C	4.066e^-4	0.964	INTRON Con
3L	4965032	3L_4965032_DEL [dm3] 3L_4965032_DEL [dm6]	AAACCCCTTTCCA...	A	4.066e^-4	0.964	INTRON Con
3L	4965046	3L_4965046_SNP [dm3] 3L_4965046_SNP [dm6]	C	T	4.066e^-4	0.964	INTRON Con
3L	14273342	3L_14273342_SNP [dm3] 3L_14280242_SNP [dm6]	C	T	4.070e^-4	0.964	INTRON fz
X	14661018	X_14661018_SNP [dm3] X_14766985_SNP [dm6]	C	T	4.095e^-4	0.964	INTERGENIC
3R	4142571	3R_4142571_SNP [dm3] 3R_8316849_SNP [dm6]	T	C	4.114e^-4	0.964	UPSTREAM CR45215 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	3384071	X_3384071_SNP [dm3] X_3490038_SNP [dm6]	A	T	4.134e^-4	0.964	UTR_3_PRIME CG10803 DOWNSTREAM Gas8 INTRON CR44999	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22373967	3R_22373967_DEL [dm3] 3R_26548245_DEL [dm6]	CTGCTTTCATGC...	C	4.156e^-4	0.964	INTRON scrib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14888997	3L_14888997_SNP [dm3] 3L_14895897_SNP [dm6]	C	T	4.156e^-4	0.964	INTERGENIC
X	17177327	X_17177327_INS [dm3] X_17283294_INS [dm6]	T	TGT	4.159e^-4	0.964	UPSTREAM CG8664 DOWNSTREAM CG8661 INTRON CG5445
2L	6126256	2L_6126256_SNP [dm3] 2L_6126256_SNP [dm6]	G	A	4.163e^-4	0.964	SYNONYMOUS_CODING WDR79 DOWNSTREAM Arpc4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14316791	2L_14316791_SNP [dm3] 2L_14316791_SNP [dm6]	A	G	4.175e^-4	0.964	INTRON wb
3R	2249063	3R_2249063_SNP [dm3] 3R_6423341_SNP [dm6]	G	T	4.183e^-4	0.964	INTRON gpp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_Trl
3R	2254415	3R_2254415_SNP [dm3] 3R_6428693_SNP [dm6]	C	A	4.183e^-4	0.964	INTRON gpp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17175032	X_17175032_SNP [dm3] X_17280999_SNP [dm6]	C	A	4.188e^-4	0.964	UTR_3_PRIME CG8664 DOWNSTREAM CG8664 & 1 other	transposable element FlyBase
2L	1369612	2L_1369612_SNP [dm3] 2L_1369612_SNP [dm6]	T	A	4.190e^-4	0.964	DOWNSTREAM CG14346 INTERGENIC
X	15138098	X_15138098_INS [dm3] X_15244065_INS [dm6]	G	GTTCCTCCAG	4.205e^-4	0.964	CODON_INSERTION PPYR1	TF binding site mE1_TFBS_HSA
3L	19175573	3L_19175573_SNP [dm3] 3L_19182473_SNP [dm6]	G	T	4.205e^-4	0.964	INTRON fz2	TF binding site mE1_TFBS_cad
X	15746000	X_15746000_SNP [dm3] X_15851967_SNP [dm6]	C	G	4.207e^-4	0.964	NON_SYNONYMOUS_CODING UBL3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	10644927	3L_10644927_SNP [dm3] 3L_10651827_SNP [dm6]	T	G	4.222e^-4	0.964	INTRON CG32066
2R	7934150	2R_7934150_SNP [dm3] 2R_12046645_SNP [dm6]	C	T	4.223e^-4	0.964	INTRON Drep-1
3R	13513773	3R_13513773_SNP [dm3] 3R_17688051_SNP [dm6]	C	T	4.224e^-4	0.964	UTR_3_PRIME osa UPSTREAM CG31249
3L	1090689	3L_1090689_SNP [dm3] 3L_1090689_SNP [dm6]	C	A	4.225e^-4	0.964	INTRON bab1	regulatory region REDfly_CRMs
3L	5423099	3L_5423099_SNP [dm3] 3L_5429999_SNP [dm6]	T	C	4.245e^-4	0.964	INTRON CG34391
X	17916202	X_17916202_DEL [dm3] X_18022169_DEL [dm6]	TG	T	4.254e^-4	0.964	INTRON Sh
2L	22111021	2L_22111021_SNP [dm3] 2L_22111021_SNP [dm6]	T	G	4.256e^-4	0.964	DOWNSTREAM CG6675 INTERGENIC	transposable element FlyBase
3R	18614157	3R_18614157_SNP [dm3] 3R_22788435_SNP [dm6]	C	T	4.257e^-4	0.964	SYNONYMOUS_CODING CG7029	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
3R	9925773	3R_9925773_DEL [dm3] 3R_14100051_DEL [dm6]	CTAAAC	C	4.258e^-4	0.964	UTR_3_PRIME PK1-R DOWNSTREAM PK1-R
2L	12283030	2L_12283030_SNP [dm3] 2L_12283030_SNP [dm6]	C	T	4.260e^-4	0.964	INTRON aret
3L	12699724	3L_12699724_SNP [dm3] 3L_12706624_SNP [dm6]	T	A	4.268e^-4	0.964	INTRON mirr	TF binding site BDTNP1_TFBS_da
2R	19457419	2R_19457419_SNP [dm3] 2R_23569896_SNP [dm6]	T	C	4.277e^-4	0.964	INTRON apt	TF binding site BDTNP1_TFBS_dl
2R	16568694	2R_16568694_SNP [dm3] 2R_20681189_SNP [dm6]	T	A	4.277e^-4	0.964	INTERGENIC
X	15816371	X_15816371_SNP [dm3] X_15922338_SNP [dm6]	T	G	4.282e^-4	0.964	INTRON CG8916
3L	10082887	3L_10082887_SNP [dm3] 3L_10089787_SNP [dm6]	C	A	4.283e^-4	0.964	UPSTREAM CG14160 DOWNSTREAM CG32053 INTRON dpr6
2R	16770107	2R_16770107_INS [dm3] 2R_20882602_INS [dm6]	A	AA	4.295e^-4	0.964	UTR_3_PRIME Cib2
3R	6309612	3R_6309612_SNP [dm3] 3R_10483890_SNP [dm6]	A	C	4.319e^-4	0.964	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9290961	2L_9290961_SNP [dm3] 2L_9290961_SNP [dm6]	G	A	4.322e^-4	0.964	INTRON Ggamma30A
2L	9549125	2L_9549125_SNP [dm3] 2L_9549125_SNP [dm6]	T	C	4.335e^-4	0.964	UTR_3_PRIME jp
X	20878379	X_20878379_SNP [dm3] X_21007352_SNP [dm6]	T	C	4.336e^-4	0.964	INTERGENIC
2R	3258050	2R_3258050_SNP [dm3] 2R_7370545_SNP [dm6]	G	A	4.337e^-4	0.964	INTRON Dscam1	regulatory region REDfly_CRMs
3L	5998952	3L_5998952_SNP [dm3] 3L_6005852_SNP [dm6]	C	T	4.337e^-4	0.964	INTRON PVRAP
3R	6723020	3R_6723020_SNP [dm3] 3R_10897298_SNP [dm6]	T	G	4.350e^-4	0.964	UPSTREAM CR45577 DOWNSTREAM Leash & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_sna
3R	6723042	3R_6723042_SNP [dm3] 3R_10897320_SNP [dm6]	T	G	4.353e^-4	0.964	UPSTREAM CR45577 DOWNSTREAM Leash & 1 other INTERGENIC
3R	6723062	3R_6723062_SNP [dm3] 3R_10897340_SNP [dm6]	A	T	4.353e^-4	0.964	UPSTREAM CR45577 DOWNSTREAM Leash & 1 other INTERGENIC
3L	19902183	3L_19902183_SNP [dm3] 3L_19909083_SNP [dm6]	C	T	4.354e^-4	0.964	UPSTREAM CR43889 INTRON Mi-2 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	11307708	X_11307708_SNP [dm3] X_11413675_SNP [dm6]	A	C	4.355e^-4	0.964	UPSTREAM Gr10b INTRON Gr10a
2L	8660592	2L_8660592_SNP [dm3] 2L_8660592_SNP [dm6]	C	T	4.359e^-4	0.964	INTRON Sema-1a
2L	9919039	2L_9919039_SNP [dm3] 2L_9919039_SNP [dm6]	G	T	4.373e^-4	0.964	SYNONYMOUS_CODING CG4598 UPSTREAM CG5885
3R	25484414	3R_25484414_SNP [dm3] 3R_29658692_SNP [dm6]	C	T	4.381e^-4	0.964	INTRON Dop1R2
3R	5506170	3R_5506170_SNP [dm3] 3R_9680448_SNP [dm6]	C	A	4.386e^-4	0.964	SPLICE_SITE_REGION nmdyn-D7 DOWNSTREAM CG16817 & 1 other INTRON nmdyn-D7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	4687347	X_4687347_SNP [dm3] X_4793314_SNP [dm6]	G	A	4.389e^-4	0.964	INTERGENIC
2L	2322069	2L_2322069_SNP [dm3] 2L_2322069_SNP [dm6]	T	C	4.390e^-4	0.964	INTRON CG9967 & 1 other
X	17925318	X_17925318_SNP [dm3] X_18031285_SNP [dm6]	T	C	4.390e^-4	0.964	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
3R	27574745	3R_27574745_INS [dm3] 3R_31749023_INS [dm6]	T	TATATAT	4.401e^-4	0.964	UTR_5_PRIME CG1910 INTRON CG1910	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
3L	3085293	3L_3085293_SNP [dm3] 3L_3085293_SNP [dm6]	A	G	4.403e^-4	0.964	SYNONYMOUS_CODING CG11486	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	3384061	X_3384061_DEL [dm3] X_3490028_DEL [dm6]	TCT	C	4.409e^-4	0.964	UTR_3_PRIME CG10803 DOWNSTREAM Gas8 INTRON CR44999	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14752251	2L_14752251_SNP [dm3] 2L_14752251_SNP [dm6]	A	G	4.411e^-4	0.964	INTERGENIC
2L	20385438	2L_20385438_SNP [dm3] 2L_20385438_SNP [dm6]	A	C	4.416e^-4	0.964	UTR_3_PRIME CG10947 DOWNSTREAM CG10947
X	12116523	X_12116523_SNP [dm3] X_12222490_SNP [dm6]	T	A	4.417e^-4	0.964	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	15990281	2L_15990281_SNP [dm3] 2L_15990281_SNP [dm6]	C	G	4.419e^-4	0.964	DOWNSTREAM CR43412 INTERGENIC
3L	485197	3L_485197_SNP [dm3] 3L_485197_SNP [dm6]	C	G	4.421e^-4	0.964	INTRON klar	TF binding site BDTNP1_TFBS_da mE1_TFBS_eve mE1_TFBS_HSA
3L	20317180	3L_20317180_INS [dm3] 3L_20324080_INS [dm6]	G	GG	4.428e^-4	0.964	UPSTREAM CG6434 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
2R	19880907	2R_19880907_SNP [dm3] 2R_23993384_SNP [dm6]	G	T	4.437e^-4	0.964	NON_SYNONYMOUS_CODING CG3860 UPSTREAM mir-1009
2L	18365404	2L_18365404_SNP [dm3] 2L_18365404_SNP [dm6]	G	C	4.438e^-4	0.964	INTRON Fas3
3R	15619559	3R_15619559_SNP [dm3] 3R_19793837_SNP [dm6]	G	T	4.444e^-4	0.964	DOWNSTREAM bnl INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	2254417	3R_2254417_SNP [dm3] 3R_6428695_SNP [dm6]	T	G	4.457e^-4	0.964	INTRON gpp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	1100061	2R_1100061_SNP [dm3] 2R_5212556_SNP [dm6]	A	T	4.458e^-4	0.964	INTRON Nipped-A
2L	4590365	2L_4590365_SNP [dm3] 2L_4590365_SNP [dm6]	G	A	4.466e^-4	0.964	INTRON dp
3R	6762930	3R_6762930_SNP [dm3] 3R_10937208_SNP [dm6]	G	A	4.484e^-4	0.964	INTERGENIC
3L	9363851	3L_9363851_SNP [dm3] 3L_9370751_SNP [dm6]	C	T	4.506e^-4	0.964	DOWNSTREAM CG4452 & 1 other INTRON Fdxh
X	8217151	X_8217151_SNP [dm3] X_8323118_SNP [dm6]	C	T	4.510e^-4	0.964	INTRON nAChRalpha3
3R	5167703	3R_5167703_SNP [dm3] 3R_9341981_SNP [dm6]	T	G	4.532e^-4	0.964	START_GAINED CG45050 UTR_5_PRIME CG45050 INTRON CG45050	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	10837559	3L_10837559_SNP [dm3] 3L_10844459_SNP [dm6]	A	G	4.534e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16870128	3L_16870128_SNP [dm3] 3L_16877028_SNP [dm6]	T	C	4.541e^-4	0.964	UPSTREAM CG32170 INTRON Lmpt
3L	16870130	3L_16870130_SNP [dm3] 3L_16877030_SNP [dm6]	G	C	4.541e^-4	0.964	UPSTREAM CG32170 INTRON Lmpt
X	11182394	X_11182394_SNP [dm3] X_11288361_SNP [dm6]	A	G	4.563e^-4	0.964	INTRON CG44422
3L	7551967	3L_7551967_SNP [dm3] 3L_7558867_SNP [dm6]	C	T	4.564e^-4	0.964	INTRON CG14837
2L	10971082	2L_10971082_SNP [dm3] 2L_10971082_SNP [dm6]	A	G	4.570e^-4	0.964	SYNONYMOUS_CODING YL-1 UPSTREAM CG33129	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
3R	10305324	3R_10305324_SNP [dm3] 3R_14479602_SNP [dm6]	C	T	4.570e^-4	0.964	INTRON cv-c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
3R	12709984	3R_12709984_INS [dm3] 3R_16884262_INS [dm6]	A	AG	4.573e^-4	0.964	INTRON iab-8	TF binding site mE1_TFBS_HSA
X	9451384	X_9451384_SNP [dm3] X_9557351_SNP [dm6]	C	A	4.610e^-4	0.964	UPSTREAM CG15317 DOWNSTREAM CR42767 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	7910440	2R_7910440_SNP [dm3] 2R_12022935_SNP [dm6]	G	A	4.621e^-4	0.964	DOWNSTREAM CG8964 INTERGENIC
3L	14016186	3L_14016186_SNP [dm3] 3L_14023086_SNP [dm6]	A	G	4.627e^-4	0.964	SYNONYMOUS_CODING ptip
3R	27852932	3R_27852932_SNP [dm3] 3R_32027210_SNP [dm6]	A	T	4.635e^-4	0.964	DOWNSTREAM CR45557 INTERGENIC
2R	15944671	2R_15944671_SNP [dm3] 2R_20057166_SNP [dm6]	C	T	4.643e^-4	0.964	UPSTREAM CR44631 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15249982	X_15249982_SNP [dm3] X_15355949_SNP [dm6]	C	T	4.646e^-4	0.964	INTRON acj6	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	12138323	X_12138323_SNP [dm3] X_12244290_SNP [dm6]	C	G	4.650e^-4	0.964	INTRON Ten-a
2L	2268001	2L_2268001_SNP [dm3] 2L_2268001_SNP [dm6]	A	G	4.676e^-4	0.964	DOWNSTREAM CG17242 INTERGENIC
3R	20842531	3R_20842531_SNP [dm3] 3R_25016809_SNP [dm6]	C	G	4.679e^-4	0.964	NON_SYNONYMOUS_CODING tnc
3R	12790598	3R_12790598_SNP [dm3] 3R_16964876_SNP [dm6]	A	G	4.684e^-4	0.964	UPSTREAM Abd-B INTRON Abd-B
3R	14709881	3R_14709881_INS [dm3] 3R_18884159_INS [dm6]	G	GG	4.686e^-4	0.964	INTERGENIC
2L	14245797	2L_14245797_DEL [dm3] 2L_14245797_DEL [dm6]	CC	C	4.687e^-4	0.964	INTERGENIC
2L	7022271	2L_7022271_SNP [dm3] 2L_7022271_SNP [dm6]	T	A	4.695e^-4	0.964	SYNONYMOUS_CODING Pcp INTRON ade3
3L	2792979	3L_2792979_SNP [dm3] 3L_2792979_SNP [dm6]	A	G	4.695e^-4	0.964	SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	2792980	3L_2792980_SNP [dm3] 3L_2792980_SNP [dm6]	A	G	4.695e^-4	0.964	SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	10093968	3L_10093968_SNP [dm3] 3L_10100868_SNP [dm6]	T	G	4.700e^-4	0.964	NON_SYNONYMOUS_CODING CG42826 INTRON dpr6
2L	14245757	2L_14245757_SNP [dm3] 2L_14245757_SNP [dm6]	C	T	4.713e^-4	0.964	INTERGENIC
2R	11658689	2R_11658689_SNP [dm3] 2R_15771184_SNP [dm6]	G	C	4.720e^-4	0.964	INTRON Zasp52
3L	11591020	3L_11591020_SNP [dm3] 3L_11597920_SNP [dm6]	C	T	4.725e^-4	0.964	INTRON CG7368	TF binding site mE1_TFBS_cad
2L	9524063	2L_9524063_SNP [dm3] 2L_9524063_SNP [dm6]	G	T	4.730e^-4	0.964	INTRON Oatp30B
X	20813669	X_20813669_DEL [dm3] X_20942642_DEL [dm6]	TA	T	4.735e^-4	0.964	INTERGENIC
3L	16784661	3L_16784661_SNP [dm3] 3L_16791561_SNP [dm6]	A	C	4.755e^-4	0.964	INTRON CG9674
3R	14131679	3R_14131679_SNP [dm3] 3R_18305957_SNP [dm6]	C	A	4.757e^-4	0.964	DOWNSTREAM PKD INTRON PKD	TF binding site mE1_TFBS_cad
3L	1524818	3L_1524818_SNP [dm3] 3L_1524818_SNP [dm6]	G	T	4.758e^-4	0.964	INTRON CG12090
X	18942513	X_18942513_SNP [dm3] X_19048480_SNP [dm6]	C	T	4.768e^-4	0.964	INTERGENIC
2L	9161978	2L_9161978_SNP [dm3] 2L_9161978_SNP [dm6]	G	A	4.771e^-4	0.964	SYNONYMOUS_CODING CG32982
2R	1097003	2R_1097003_SNP [dm3] 2R_5209498_SNP [dm6]	G	A	4.777e^-4	0.964	INTRON Nipped-A
2R	14603228	2R_14603228_SNP [dm3] 2R_18715723_SNP [dm6]	C	T	4.784e^-4	0.964	INTERGENIC
3R	5143433	3R_5143433_SNP [dm3] 3R_9317711_SNP [dm6]	C	T	4.786e^-4	0.964	INTRON CG8861
3R	10627698	3R_10627698_SNP [dm3] 3R_14801976_SNP [dm6]	A	G	4.793e^-4	0.964	NON_SYNONYMOUS_CODING CG14857 DOWNSTREAM CG14856	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	7818129	2R_7818129_SNP [dm3] 2R_11930624_SNP [dm6]	G	C	4.800e^-4	0.964	UPSTREAM CR44312 INTERGENIC
3R	27068931	3R_27068931_INS [dm3] 3R_31243209_INS [dm6]	A	AA	4.801e^-4	0.964	INTRON qless
3R	25881278	3R_25881278_SNP [dm3] 3R_30055556_SNP [dm6]	A	G	4.802e^-4	0.964	SYNONYMOUS_CODING spn-A UPSTREAM CG15526 DOWNSTREAM CG7946	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	7140330	2R_7140330_SNP [dm3] 2R_11252825_SNP [dm6]	C	A	4.812e^-4	0.964	NON_SYNONYMOUS_CODING Cpr47Ea DOWNSTREAM Or47a
2L	18766576	2L_18766576_SNP [dm3] 2L_18766576_SNP [dm6]	C	A	4.817e^-4	0.964	INTRON ham
2R	6864410	2R_6864410_SNP [dm3] 2R_10976905_SNP [dm6]	G	C	4.820e^-4	0.964	INTERGENIC
3R	19767429	3R_19767429_SNP [dm3] 3R_23941707_SNP [dm6]	G	C	4.824e^-4	0.964	INTRON Gdh
3L	10094062	3L_10094062_SNP [dm3] 3L_10100962_SNP [dm6]	C	T	4.831e^-4	0.964	UPSTREAM CG42826 INTRON dpr6
3R	20830598	3R_20830598_SNP [dm3] 3R_25004876_SNP [dm6]	G	T	4.841e^-4	0.964	INTRON tnc
3L	4714427	3L_4714427_INS [dm3] 3L_4714427_INS [dm6]	T	TCCAC	4.842e^-4	0.964	INTRON RhoGEF64C
3R	9264803	3R_9264803_SNP [dm3] 3R_13439081_SNP [dm6]	C	T	4.846e^-4	0.964	EXON CR42756
2R	19572049	2R_19572049_SNP [dm3] 2R_23684526_SNP [dm6]	G	A	4.851e^-4	0.964	UTR_3_PRIME St3 DOWNSTREAM l_2_efl INTRON St3	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	13019488	3R_13019488_SNP [dm3] 3R_17193766_SNP [dm6]	T	C	4.852e^-4	0.964	INTRON Mur89F
X	17913265	X_17913265_SNP [dm3] X_18019232_SNP [dm6]	A	T	4.867e^-4	0.964	INTRON Sh
X	17913266	X_17913266_SNP [dm3] X_18019233_SNP [dm6]	T	A	4.867e^-4	0.964	INTRON Sh
3L	17456800	3L_17456800_SNP [dm3] 3L_17463700_SNP [dm6]	A	G	4.868e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	3839881	2L_3839881_SNP [dm3] 2L_3839881_SNP [dm6]	T	C	4.871e^-4	0.964	DOWNSTREAM slp2 INTERGENIC	regulatory region REDfly_CRMs
2R	6088682	2R_6088682_SNP [dm3] 2R_10201177_SNP [dm6]	A	G	4.875e^-4	0.964	INTERGENIC
2R	9354065	2R_9354065_SNP [dm3] 2R_13466560_SNP [dm6]	C	G	4.881e^-4	0.964	INTRON arr
3L	17451721	3L_17451721_SNP [dm3] 3L_17458621_SNP [dm6]	T	C	4.885e^-4	0.964	INTERGENIC
3L	3078621	3L_3078621_SNP [dm3] 3L_3078621_SNP [dm6]	G	T	4.893e^-4	0.964	INTRON CG11486
3R	12790565	3R_12790565_SNP [dm3] 3R_16964843_SNP [dm6]	G	T	4.897e^-4	0.964	UPSTREAM Abd-B INTRON Abd-B
3L	10780411	3L_10780411_SNP [dm3] 3L_10787311_SNP [dm6]	A	T	4.914e^-4	0.964	INTERGENIC
2R	7907499	2R_7907499_SNP [dm3] 2R_12019994_SNP [dm6]	C	T	4.922e^-4	0.964	UPSTREAM otk INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	5274265	3L_5274265_SNP [dm3] 3L_5281165_SNP [dm6]	T	C	4.925e^-4	0.964	INTERGENIC
3R	13019427	3R_13019427_SNP [dm3] 3R_17193705_SNP [dm6]	T	C	4.930e^-4	0.964	INTRON Mur89F
3R	13019480	3R_13019480_SNP [dm3] 3R_17193758_SNP [dm6]	G	A	4.930e^-4	0.964	INTRON Mur89F
3R	10682321	3R_10682321_SNP [dm3] 3R_14856599_SNP [dm6]	T	A	4.942e^-4	0.964	INTRON btsz
X	6295230	X_6295230_SNP [dm3] X_6401197_SNP [dm6]	G	A	4.942e^-4	0.964	INTERGENIC
3L	3078682	3L_3078682_SNP [dm3] 3L_3078682_SNP [dm6]	A	T	4.944e^-4	0.964	INTRON CG11486
2L	15163957	2L_15163957_DEL [dm3] 2L_15163957_DEL [dm6]	TAC	T	4.946e^-4	0.964	INTRON CG4168
3R	22008456	3R_22008456_SNP [dm3] 3R_26182734_SNP [dm6]	A	C	4.956e^-4	0.964	INTRON CG31323
3L	16027991	3L_16027991_SNP [dm3] 3L_16034891_SNP [dm6]	T	C	4.973e^-4	0.964	UPSTREAM CG5895 DOWNSTREAM CG42716 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3081744	3L_3081744_SNP [dm3] 3L_3081744_SNP [dm6]	C	G	4.975e^-4	0.964	UTR_5_PRIME CG11486 UPSTREAM CG11486 INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	25905803	3R_25905803_SNP [dm3] 3R_30080081_SNP [dm6]	T	C	4.976e^-4	0.964	INTRON sima
3R	27095900	3R_27095900_SNP [dm3] 3R_31270178_SNP [dm6]	G	T	4.983e^-4	0.964	INTERGENIC
2R	6451975	2R_6451975_DEL [dm3] 2R_10564470_DEL [dm6]	TCTT	T	4.987e^-4	0.964	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	4007686	3L_4007686_SNP [dm3] 3L_4007686_SNP [dm6]	G	A	4.990e^-4	0.964	INTERGENIC
2L	2557794	2L_2557794_SNP [dm3] 2L_2557794_SNP [dm6]	G	A	4.994e^-4	0.964	INTERGENIC	TF binding site mE1_TFBS_inv
3L	12556384	3L_12556384_SNP [dm3] 3L_12563284_SNP [dm6]	T	C	4.996e^-4	0.964	INTRON sowah
3L	12556386	3L_12556386_SNP [dm3] 3L_12563286_SNP [dm6]	C	A	4.996e^-4	0.964	INTRON sowah
2L	5401840	2L_5401840_DEL [dm3] 2L_5401840_DEL [dm6]	ACTATTTAAA	A	4.997e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z
3R	27662671	3R_27662671_SNP [dm3] 3R_31836949_SNP [dm6]	G	A	5.005e^-4	0.964	SYNONYMOUS_CODING RhoGAP100F	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16147987	X_16147987_INS [dm3] X_16253954_INS [dm6]	A	AA	5.010e^-4	0.964	UPSTREAM snRNA:U2:14B DOWNSTREAM snRNA:U5:14B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	12445889	2L_12445889_SNP [dm3] 2L_12445889_SNP [dm6]	C	A	5.012e^-4	0.964	UTR_5_PRIME Oatp33Ea DOWNSTREAM CG5421	TF binding site BDTNP1_TFBS_da
2R	19322632	2R_19322632_SNP [dm3] 2R_23435109_SNP [dm6]	A	G	5.017e^-4	0.964	INTERGENIC
2L	5398510	2L_5398510_SNP [dm3] 2L_5398510_SNP [dm6]	T	A	5.020e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5398512	2L_5398512_SNP [dm3] 2L_5398512_SNP [dm6]	A	G	5.020e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14723113	2L_14723113_SNP [dm3] 2L_14723113_SNP [dm6]	G	A	5.026e^-4	0.964	INTERGENIC
3L	23834606	3L_23834606_SNP [dm3] 3L_23841506_SNP [dm6]	A	T	5.040e^-4	0.964	INTRON CG40470
2L	2264473	2L_2264473_SNP [dm3] 2L_2264473_SNP [dm6]	A	G	5.047e^-4	0.964	DOWNSTREAM CG4270 INTRON CG34049
X	13715430	X_13715430_SNP [dm3] X_13821397_SNP [dm6]	A	C	5.048e^-4	0.964	INTRON Clic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2L	1671860	2L_1671860_SNP [dm3] 2L_1671860_SNP [dm6]	T	C	5.056e^-4	0.964	INTRON chinmo
3R	9307349	3R_9307349_SNP [dm3] 3R_13481627_SNP [dm6]	A	C	5.057e^-4	0.964	INTERGENIC
3L	7189098	3L_7189098_SNP [dm3] 3L_7195998_SNP [dm6]	T	C	5.058e^-4	0.964	INTERGENIC
2R	1092302	2R_1092302_SNP [dm3] 2R_5204797_SNP [dm6]	C	T	5.065e^-4	0.964	INTRON Nipped-A
X	12604230	X_12604230_SNP [dm3] X_12710197_SNP [dm6]	A	T	5.067e^-4	0.964	INTRON Smr
2R	9190038	2R_9190038_SNP [dm3] 2R_13302533_SNP [dm6]	A	T	5.075e^-4	0.964	DOWNSTREAM CG17047 INTERGENIC
3L	15542609	3L_15542609_SNP [dm3] 3L_15549509_SNP [dm6]	T	A	5.080e^-4	0.964	INTRON CrebA	TF binding site mE1_TFBS_cad
2L	4709158	2L_4709158_SNP [dm3] 2L_4709158_SNP [dm6]	C	T	5.082e^-4	0.964	INTRON CG34351
3L	873931	3L_873931_SNP [dm3] 3L_873931_SNP [dm6]	T	C	5.082e^-4	0.964	INTRON CG32479	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	15877278	2R_15877278_SNP [dm3] 2R_19989773_SNP [dm6]	T	G	5.094e^-4	0.964	INTERGENIC
3L	13461638	3L_13461638_SNP [dm3] 3L_13468538_SNP [dm6]	A	T	5.100e^-4	0.964	SYNONYMOUS_CODING CG10089
3L	7290253	3L_7290253_SNP [dm3] 3L_7297153_SNP [dm6]	C	G	5.117e^-4	0.964	INTRON unc-13-4A
3L	17960014	3L_17960014_SNP [dm3] 3L_17966914_SNP [dm6]	C	A	5.119e^-4	0.964	INTRON Eip75B
3R	18323724	3R_18323724_SNP [dm3] 3R_22498002_SNP [dm6]	A	T	5.120e^-4	0.964	INTRON Octbeta1R
3R	10057327	3R_10057327_SNP [dm3] 3R_14231605_SNP [dm6]	T	A	5.127e^-4	0.964	INTERGENIC
3L	2914967	3L_2914967_SNP [dm3] 3L_2914967_SNP [dm6]	G	A	5.131e^-4	0.964	DOWNSTREAM CG9970 INTRON Shab
2R	9190040	2R_9190040_SNP [dm3] 2R_13302535_SNP [dm6]	G	A	5.133e^-4	0.964	DOWNSTREAM CG17047 INTERGENIC
2L	10491750	2L_10491750_SNP [dm3] 2L_10491750_SNP [dm6]	C	T	5.147e^-4	0.964	UPSTREAM CG13144 DOWNSTREAM Myo31DF INTERGENIC
3L	19508777	3L_19508777_SNP [dm3] 3L_19515677_SNP [dm6]	A	T	5.147e^-4	0.964	INTERGENIC
3R	25466258	3R_25466258_SNP [dm3] 3R_29640536_SNP [dm6]	A	G	5.148e^-4	0.964	INTRON Dop1R2	TF binding site mE1_TFBS_chinmo
3L	603970	3L_603970_SNP [dm3] 3L_603970_SNP [dm6]	G	C	5.150e^-4	0.964	START_GAINED CG13893 UTR_5_PRIME CG13893	TF binding site mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	15014270	2R_15014270_SNP [dm3] 2R_19126765_SNP [dm6]	G	A	5.154e^-4	0.964	UPSTREAM CG15117 INTRON CG15117
3R	10631197	3R_10631197_SNP [dm3] 3R_14805475_SNP [dm6]	T	C	5.159e^-4	0.964	UTR_3_PRIME btsz
3R	27758919	3R_27758919_SNP [dm3] 3R_31933197_SNP [dm6]	G	A	5.163e^-4	0.964	INTRON heph
2R	7940759	2R_7940759_SNP [dm3] 2R_12053254_SNP [dm6]	A	G	5.168e^-4	0.964	SYNONYMOUS_CODING CG44314
3L	10376542	3L_10376542_INS [dm3] 3L_10383442_INS [dm6]	A	GT	5.194e^-4	0.964	INTERGENIC
2L	8665791	2L_8665791_SNP [dm3] 2L_8665791_SNP [dm6]	G	A	5.208e^-4	0.964	INTRON Sema-1a
3L	11186003	3L_11186003_SNP [dm3] 3L_11192903_SNP [dm6]	C	T	5.209e^-4	0.964	INTRON GlcAT-P
2R	13245690	2R_13245690_SNP [dm3] 2R_17358185_SNP [dm6]	G	A	5.210e^-4	0.964	INTRON mbl
3R	27130859	3R_27130859_SNP [dm3] 3R_31305137_SNP [dm6]	C	T	5.216e^-4	0.964	UTR_5_PRIME CG11340
3R	27130860	3R_27130860_SNP [dm3] 3R_31305138_SNP [dm6]	A	T	5.216e^-4	0.964	UTR_5_PRIME CG11340
2L	4055656	2L_4055656_SNP [dm3] 2L_4055656_SNP [dm6]	T	G	5.218e^-4	0.964	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3L	3076638	3L_3076638_SNP [dm3] 3L_3076638_SNP [dm6]	G	T	5.220e^-4	0.964	INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	15591158	3L_15591158_SNP [dm3] 3L_15598058_SNP [dm6]	G	T	5.223e^-4	0.964	INTRON RhoGAP71E	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12280186	2L_12280186_SNP [dm3] 2L_12280186_SNP [dm6]	G	A	5.229e^-4	0.964	INTRON aret
3L	18788125	3L_18788125_SNP [dm3] 3L_18795025_SNP [dm6]	C	T	5.233e^-4	0.964	INTRON ftz-f1
3L	4828798	3L_4828798_SNP [dm3] 3L_4828798_SNP [dm6]	G	T	5.234e^-4	0.964	UTR_3_PRIME Aats-leu DOWNSTREAM CG13708
2R	12265230	2R_12265230_INS [dm3] 2R_16377725_INS [dm6]	T	TTGAAGAATGACTAAGTTTC...	5.238e^-4	0.964	INTERGENIC
2R	2857044	2R_2857044_SNP [dm3] 2R_6969539_SNP [dm6]	C	A	5.241e^-4	0.964	INTRON mim & 1 other	TF binding site BDTNP1_TFBS_da
3L	7206266	3L_7206266_SNP [dm3] 3L_7213166_SNP [dm6]	G	A	5.262e^-4	0.964	INTERGENIC
3R	22008457	3R_22008457_SNP [dm3] 3R_26182735_SNP [dm6]	G	T	5.276e^-4	0.964	INTRON CG31323
3R	25484221	3R_25484221_SNP [dm3] 3R_29658499_SNP [dm6]	A	C	5.283e^-4	0.964	INTRON Dop1R2
2L	7974314	2L_7974314_SNP [dm3] 2L_7974314_SNP [dm6]	A	G	5.284e^-4	0.964	INTRON Snoo
3R	5595395	3R_5595395_DEL [dm3] 3R_9769673_DEL [dm6]	CC	C	5.287e^-4	0.964	UTR_3_PRIME CG8481 UPSTREAM MED6 DOWNSTREAM CG9471	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17941476	3L_17941476_DEL [dm3] 3L_17948376_DEL [dm6]	GGGGG	G	5.289e^-4	0.964	UPSTREAM CR45393 INTERGENIC
3L	778494	3L_778494_SNP [dm3] 3L_778494_SNP [dm6]	G	A	5.299e^-4	0.964	INTERGENIC
2R	1096679	2R_1096679_SNP [dm3] 2R_5209174_SNP [dm6]	A	T	5.300e^-4	0.964	INTRON Nipped-A
2L	14119314	2L_14119314_SNP [dm3] 2L_14119314_SNP [dm6]	A	C	5.304e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	17189154	3L_17189154_SNP [dm3] 3L_17196054_SNP [dm6]	G	A	5.327e^-4	0.964	INTRON Rbp6	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	14399959	2L_14399959_SNP [dm3] 2L_14399959_SNP [dm6]	A	G	5.329e^-4	0.964	INTRON elB
2L	5111049	2L_5111049_INS [dm3] 2L_5111049_INS [dm6]	A	AGGGA	5.329e^-4	0.964	INTRON Msp300	TF binding site mE1_TFBS_cad
2L	11798684	2L_11798684_SNP [dm3] 2L_11798684_SNP [dm6]	G	A	5.344e^-4	0.964	SYNONYMOUS_CODING crol UPSTREAM snoRNA:Me18S-A934	TF binding site mE1_TFBS_cad
3L	9364395	3L_9364395_DEL [dm3] 3L_9371295_DEL [dm6]	TC	T	5.351e^-4	0.964	UPSTREAM Fdxh DOWNSTREAM CG4452 & 1 other INTERGENIC
3L	7226422	3L_7226422_SNP [dm3] 3L_7233322_SNP [dm6]	G	A	5.361e^-4	0.964	INTERGENIC
3L	3077084	3L_3077084_SNP [dm3] 3L_3077084_SNP [dm6]	G	A	5.363e^-4	0.964	UPSTREAM CG11486 INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
X	17933490	X_17933490_SNP [dm3] X_18039457_SNP [dm6]	C	T	5.366e^-4	0.964	UTR_5_PRIME Sh
3L	2725010	3L_2725010_SNP [dm3] 3L_2725010_SNP [dm6]	G	T	5.367e^-4	0.964	INTRON Mrtf
3R	5305738	3R_5305738_SNP [dm3] 3R_9480016_SNP [dm6]	T	A	5.379e^-4	0.964	INTRON CG16779
3R	5193197	3R_5193197_SNP [dm3] 3R_9367475_SNP [dm6]	G	A	5.379e^-4	0.964	SYNONYMOUS_CODING CG8129 DOWNSTREAM FER
2L	7834037	2L_7834037_SNP [dm3] 2L_7834037_SNP [dm6]	G	A	5.385e^-4	0.964	DOWNSTREAM mts INTERGENIC
2L	8665824	2L_8665824_INS [dm3] 2L_8665824_INS [dm6]	T	TAT	5.385e^-4	0.964	INTRON Sema-1a	TF binding site mE1_TFBS_cad
X	15634701	X_15634701_INS [dm3] X_15740668_INS [dm6]	A	TGG	5.405e^-4	0.964	DOWNSTREAM CG8206 & 1 other INTERGENIC	TF binding site mE1_TFBS_cnc
2R	15319605	2R_15319605_SNP [dm3] 2R_19432100_SNP [dm6]	A	G	5.420e^-4	0.964	SYNONYMOUS_CODING Fak
3R	21441224	3R_21441224_DEL [dm3] 3R_25615502_DEL [dm6]	ACCTCCTCCAT...	A	5.436e^-4	0.964	INTRON Npl4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3078502	3L_3078502_SNP [dm3] 3L_3078502_SNP [dm6]	C	G	5.436e^-4	0.964	INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	7176171	3L_7176171_SNP [dm3] 3L_7183071_SNP [dm6]	G	A	5.450e^-4	0.964	INTRON Dscam2
3L	15542162	3L_15542162_DEL [dm3] 3L_15549062_DEL [dm6]	GTCTAAACTACAGACTTTAG...	G	5.467e^-4	0.964	INTRON CrebA	TF binding site BDTNP1_TFBS_hb
3R	16498670	3R_16498670_SNP [dm3] 3R_20672948_SNP [dm6]	C	T	5.484e^-4	0.964	DOWNSTREAM Cpr92F INTERGENIC
3L	3725685	3L_3725685_SNP [dm3] 3L_3725685_SNP [dm6]	T	C	5.491e^-4	0.964	INTRON CG32264
3R	6723557	3R_6723557_SNP [dm3] 3R_10897835_SNP [dm6]	C	G	5.494e^-4	0.964	UPSTREAM CR45577 DOWNSTREAM CR45578 INTERGENIC
3L	10074202	3L_10074202_SNP [dm3] 3L_10081102_SNP [dm6]	G	A	5.500e^-4	0.964	INTRON dpr6
X	11614783	X_11614783_SNP [dm3] X_11720750_SNP [dm6]	A	G	5.505e^-4	0.964	NON_SYNONYMOUS_CODING Tango10 DOWNSTREAM prtp	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9312750	3R_9312750_SNP [dm3] 3R_13487028_SNP [dm6]	C	G	5.505e^-4	0.964	INTERGENIC
X	20813583	X_20813583_SNP [dm3] X_20942556_SNP [dm6]	T	A	5.534e^-4	0.964	INTERGENIC
3L	8156546	3L_8156546_SNP [dm3] 3L_8163446_SNP [dm6]	T	A	5.543e^-4	0.964	INTRON CG13675
3R	6034988	3R_6034988_SNP [dm3] 3R_10209266_SNP [dm6]	G	A	5.555e^-4	0.964	INTRON Syn & 1 other
2L	14143682	2L_14143682_SNP [dm3] 2L_14143682_SNP [dm6]	T	C	5.565e^-4	0.964	INTRON CG17341
2R	9455720	2R_9455720_SNP [dm3] 2R_13568215_SNP [dm6]	A	C	5.571e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
2R	13878049	2R_13878049_SNP [dm3] 2R_17990544_SNP [dm6]	C	T	5.573e^-4	0.964	INTRON dpr13
X	20448962	X_20448962_SNP [dm3] X_20577935_SNP [dm6]	G	A	5.575e^-4	0.964	INTERGENIC
3L	2723052	3L_2723052_SNP [dm3] 3L_2723052_SNP [dm6]	G	T	5.576e^-4	0.964	SYNONYMOUS_CODING Mrtf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22312460	3L_22312460_SNP [dm3] 3L_22319360_SNP [dm6]	G	T	5.583e^-4	0.964	INTRON Ten-m	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9976501	3L_9976501_SNP [dm3] 3L_9983401_SNP [dm6]	T	C	5.585e^-4	0.964	INTRON dpr6
3L	10366956	3L_10366956_SNP [dm3] 3L_10373856_SNP [dm6]	A	T	5.591e^-4	0.964	INTERGENIC
3R	14612327	3R_14612327_DEL [dm3] 3R_18786605_DEL [dm6]	AGCTTCA	A	5.595e^-4	0.964	INTRON CG7720
2L	5190882	2L_5190882_SNP [dm3] 2L_5190882_SNP [dm6]	A	G	5.598e^-4	0.964	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	2254909	X_2254909_DEL [dm3] X_2360876_DEL [dm6]	TTTT	T	5.602e^-4	0.964	INTRON ptr
2L	2264454	2L_2264454_SNP [dm3] 2L_2264454_SNP [dm6]	T	G	5.606e^-4	0.964	DOWNSTREAM CG4270 INTRON CG34049
2R	11282586	2R_11282586_SNP [dm3] 2R_15395081_SNP [dm6]	C	T	5.614e^-4	0.964	INTERGENIC
3R	10949139	3R_10949139_SNP [dm3] 3R_15123417_SNP [dm6]	G	A	5.618e^-4	0.964	INTRON CG42788
3R	6762829	3R_6762829_SNP [dm3] 3R_10937107_SNP [dm6]	T	A	5.621e^-4	0.964	INTERGENIC
3R	15428877	3R_15428877_INS [dm3] 3R_19603155_INS [dm6]	A	AA	5.629e^-4	0.964	UPSTREAM CG7342 DOWNSTREAM CG7333 INTERGENIC
X	16561936	X_16561936_SNP [dm3] X_16667903_SNP [dm6]	C	T	5.640e^-4	0.964	DOWNSTREAM CG13012 INTRON r	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9476305	3L_9476305_SNP [dm3] 3L_9483205_SNP [dm6]	T	C	5.640e^-4	0.964	SYNONYMOUS_CODING Jarid2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15176694	3L_15176694_SNP [dm3] 3L_15183594_SNP [dm6]	C	G	5.642e^-4	0.964	INTERGENIC
3R	27655107	3R_27655107_SNP [dm3] 3R_31829385_SNP [dm6]	T	G	5.645e^-4	0.964	INTRON RhoGAP100F
2L	7834333	2L_7834333_SNP [dm3] 2L_7834333_SNP [dm6]	C	G	5.651e^-4	0.964	DOWNSTREAM mts INTERGENIC
3R	25204061	3R_25204061_SNP [dm3] 3R_29378339_SNP [dm6]	C	A	5.670e^-4	0.964	INTRON Ptp99A	TF binding site mE1_TFBS_HSA
2L	12828283	2L_12828283_DEL [dm3] 2L_12828283_DEL [dm6]	GTTAAG	G	5.681e^-4	0.964	INTERGENIC
2R	15090482	2R_15090482_SNP [dm3] 2R_19202977_SNP [dm6]	T	C	5.682e^-4	0.964	INTRON hppy
3L	9261767	3L_9261767_SNP [dm3] 3L_9268667_SNP [dm6]	T	A	5.687e^-4	0.964	INTRON GluRIB
3L	9636787	3L_9636787_SNP [dm3] 3L_9643687_SNP [dm6]	G	T	5.688e^-4	0.964	UPSTREAM CG33696 INTRON fry
2L	3784647	2L_3784647_SNP [dm3] 2L_3784647_SNP [dm6]	C	T	5.689e^-4	0.964	UPSTREAM CG31960 DOWNSTREAM bowl INTERGENIC
3R	27145410	3R_27145410_SNP [dm3] 3R_31319688_SNP [dm6]	T	A	5.694e^-4	0.964	INTRON CG34347
2L	17893226	2L_17893226_SNP [dm3] 2L_17893226_SNP [dm6]	A	G	5.696e^-4	0.964	UPSTREAM CR43420 INTERGENIC
X	4133862	X_4133862_SNP [dm3] X_4239829_SNP [dm6]	A	G	5.711e^-4	0.964	INTERGENIC
3R	8029836	3R_8029836_SNP [dm3] 3R_12204114_SNP [dm6]	G	C	5.712e^-4	0.964	INTERGENIC
2R	1099463	2R_1099463_SNP [dm3] 2R_5211958_SNP [dm6]	C	A	5.721e^-4	0.964	INTRON Nipped-A	transposable element FlyBase
2L	10371546	2L_10371546_SNP [dm3] 2L_10371546_SNP [dm6]	A	G	5.721e^-4	0.964	SYNONYMOUS_CODING rho-5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10682182	3R_10682182_SNP [dm3] 3R_14856460_SNP [dm6]	A	G	5.737e^-4	0.964	INTRON btsz
X	5013613	X_5013613_DEL [dm3] X_5119580_DEL [dm6]	CT	C	5.738e^-4	0.964	INTRON rg & 1 other
X	10263102	X_10263102_SNP [dm3] X_10369069_SNP [dm6]	A	T	5.759e^-4	0.964	INTRON CG17841	TF binding site mE1_TFBS_HSA
X	10273948	X_10273948_SNP [dm3] X_10379915_SNP [dm6]	C	T	5.759e^-4	0.964	NON_SYNONYMOUS_CODING CG32681 INTRON CG17841
3L	761248	3L_761248_SNP [dm3] 3L_761248_SNP [dm6]	G	T	5.761e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	21021456	3R_21021456_SNP [dm3] 3R_25195734_SNP [dm6]	A	T	5.767e^-4	0.964	INTRON CG13653	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	21372564	3L_21372564_SNP [dm3] 3L_21379464_SNP [dm6]	C	T	5.768e^-4	0.964	INTERGENIC
3R	27169061	3R_27169061_SNP [dm3] 3R_31343339_SNP [dm6]	A	G	5.783e^-4	0.964	INTRON CG34347
3L	10603297	3L_10603297_INS [dm3] 3L_10610197_INS [dm6]	C	CAAGCATTTTCAAGTG...	5.799e^-4	0.964	INTERGENIC
2L	11505287	2L_11505287_SNP [dm3] 2L_11505287_SNP [dm6]	T	A	5.801e^-4	0.964	INTRON spz4
3L	3081898	3L_3081898_DEL [dm3] 3L_3081898_DEL [dm6]	TGTATGTAT	T	5.802e^-4	0.964	UPSTREAM CG11486 INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	10053439	3R_10053439_SNP [dm3] 3R_14227717_SNP [dm6]	G	T	5.805e^-4	0.964	UPSTREAM CG9631 DOWNSTREAM CG9624 INTERGENIC
3R	9183092	3R_9183092_SNP [dm3] 3R_13357370_SNP [dm6]	G	T	5.806e^-4	0.964	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19880870	2R_19880870_SNP [dm3] 2R_23993347_SNP [dm6]	C	T	5.808e^-4	0.964	UPSTREAM mir-1009 INTRON CG3860
2R	19880872	2R_19880872_SNP [dm3] 2R_23993349_SNP [dm6]	A	G	5.808e^-4	0.964	UPSTREAM mir-1009 INTRON CG3860
2R	1147859	2R_1147859_SNP [dm3] 2R_5260354_SNP [dm6]	G	T	5.811e^-4	0.964	INTRON d4	transposable element FlyBase
3L	872319	3L_872319_SNP [dm3] 3L_872319_SNP [dm6]	C	T	5.815e^-4	0.964	UPSTREAM CG32479 DOWNSTREAM CG12502 INTRON CG32479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	18576652	2L_18576652_SNP [dm3] 2L_18576652_SNP [dm6]	T	A	5.829e^-4	0.964	INTRON Pde11
2L	8965717	2L_8965717_SNP [dm3] 2L_8965717_SNP [dm6]	C	A	5.833e^-4	0.964	SPLICE_SITE_REGION CG32984 INTRON CG32984
X	5367776	X_5367776_DEL [dm3] X_5473743_DEL [dm6]	AAA	A	5.845e^-4	0.964	INTRON SPR
X	16147911	X_16147911_INS [dm3] X_16253878_INS [dm6]	T	CA	5.852e^-4	0.964	UPSTREAM snRNA:U2:14B DOWNSTREAM snRNA:U5:14B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	17512819	3R_17512819_SNP [dm3] 3R_21687097_SNP [dm6]	C	T	5.857e^-4	0.964	INTRON CG31176
2R	9189947	2R_9189947_INS [dm3] 2R_13302442_INS [dm6]	A	AA	5.859e^-4	0.964	DOWNSTREAM CG17047 INTERGENIC
2L	8398451	2L_8398451_DEL [dm3] 2L_8398451_DEL [dm6]	CAATAC	C	5.878e^-4	0.964	UPSTREAM CG13386 DOWNSTREAM CG13385 INTERGENIC
3R	6723422	3R_6723422_SNP [dm3] 3R_10897700_SNP [dm6]	G	C	5.878e^-4	0.964	UPSTREAM CR45577 DOWNSTREAM CR45578 INTERGENIC
3L	17109119	3L_17109119_SNP [dm3] 3L_17116019_SNP [dm6]	T	C	5.880e^-4	0.964	INTRON Rbp6
2R	19398387	2R_19398387_SNP [dm3] 2R_23510864_SNP [dm6]	T	A	5.892e^-4	0.964	DOWNSTREAM CG3906 INTERGENIC	TF binding site mE1_TFBS_cad
2L	2380185	2L_2380185_SNP [dm3] 2L_2380185_SNP [dm6]	C	T	5.900e^-4	0.964	UTR_3_PRIME Atxn7 UPSTREAM Eogt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	15164903	2L_15164903_SNP [dm3] 2L_15164903_SNP [dm6]	C	T	5.904e^-4	0.964	SYNONYMOUS_CODING CG4168	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5266792	2L_5266792_SNP [dm3] 2L_5266792_SNP [dm6]	G	T	5.905e^-4	0.964	SYNONYMOUS_CODING Cyp4ac2 DOWNSTREAM Cyp4ac1 INTRON tkv
3R	17176577	3R_17176577_SNP [dm3] 3R_21350855_SNP [dm6]	A	C	5.913e^-4	0.964	UTR_3_PRIME mod_mdg4_ DOWNSTREAM mod_mdg4_	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	4638337	3L_4638337_SNP [dm3] 3L_4638337_SNP [dm6]	C	T	5.919e^-4	0.964	INTRON axo
3L	6185134	3L_6185134_SNP [dm3] 3L_6192034_SNP [dm6]	C	T	5.938e^-4	0.964	UTR_3_PRIME CG7386 DOWNSTREAM CG13298	TF binding site mE1_TFBS_cad
3R	27068903	3R_27068903_SNP [dm3] 3R_31243181_SNP [dm6]	G	C	5.949e^-4	0.964	INTRON qless
3R	27068934	3R_27068934_SNP [dm3] 3R_31243212_SNP [dm6]	T	G	5.949e^-4	0.964	INTRON qless
3R	27068942	3R_27068942_SNP [dm3] 3R_31243220_SNP [dm6]	T	C	5.949e^-4	0.964	INTRON qless
X	3381587	X_3381587_SNP [dm3] X_3487554_SNP [dm6]	C	A	5.953e^-4	0.964	INTRON CR44999 & 1 other	TF binding site mE1_TFBS_sens
2R	14603231	2R_14603231_SNP [dm3] 2R_18715726_SNP [dm6]	G	A	5.962e^-4	0.964	INTERGENIC
3L	3057801	3L_3057801_SNP [dm3] 3L_3057801_SNP [dm6]	G	A	5.970e^-4	0.964	INTRON CG32486	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	3084201	3L_3084201_SNP [dm3] 3L_3084201_SNP [dm6]	T	G	5.970e^-4	0.964	INTRON CG11486
2L	8709443	2L_8709443_SNP [dm3] 2L_8709443_SNP [dm6]	T	C	5.974e^-4	0.964	UTR_5_PRIME Hnf4 UPSTREAM Hnf4 DOWNSTREAM raw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	2249369	3R_2249369_SNP [dm3] 3R_6423647_SNP [dm6]	A	G	5.981e^-4	0.964	INTRON gpp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	10606424	3R_10606424_SNP [dm3] 3R_14780702_SNP [dm6]	C	T	6.002e^-4	0.964	INTRON jvl
2R	1123034	2R_1123034_SNP [dm3] 2R_5235529_SNP [dm6]	C	G	6.015e^-4	0.964	INTRON Nipped-A	transposable element FlyBase
3L	4196990	3L_4196990_SNP [dm3] 3L_4196990_SNP [dm6]	G	A	6.017e^-4	0.964	INTRON CG43367
3L	4197036	3L_4197036_SNP [dm3] 3L_4197036_SNP [dm6]	G	A	6.017e^-4	0.964	SYNONYMOUS_CODING CG43367
X	18797966	X_18797966_INS [dm3] X_18903933_INS [dm6]	T	TTTT	6.020e^-4	0.964	INTRON CG7378
2R	16656592	2R_16656592_SNP [dm3] 2R_20769087_SNP [dm6]	T	C	6.020e^-4	0.964	INTERGENIC
2R	12271742	2R_12271742_SNP [dm3] 2R_16384237_SNP [dm6]	G	A	6.020e^-4	0.964	UTR_3_PRIME CG43187	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10094109	3L_10094109_SNP [dm3] 3L_10101009_SNP [dm6]	G	A	6.025e^-4	0.964	UPSTREAM CG42826 INTRON dpr6
3L	10870660	3L_10870660_SNP [dm3] 3L_10877560_SNP [dm6]	T	C	6.030e^-4	0.964	SYNONYMOUS_CODING CG6418	TF binding site mE1_TFBS_sens
2L	9324665	2L_9324665_SNP [dm3] 2L_9324665_SNP [dm6]	T	C	6.033e^-4	0.964	INTERGENIC

By genomic position
Variant impact
Gene name

mn_Aggression_Social phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results