DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.086e^-15)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.01519

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	3.2409	0.0718
In_2L_t	11.5896	0.003

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

4749 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	3331631	3L_3331631_SNP [dm3] 3L_3331631_SNP [dm6]	C	T	7.170e^-10	0.001	SYNONYMOUS_CODING CG14961	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	7868730	2R_7868730_SNP [dm3] 2R_11981225_SNP [dm6]	G	A	9.933e^-9	0.006	UTR_3_PRIME CG33145 UPSTREAM CG30037	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	12148924	2L_12148924_SNP [dm3] 2L_12148924_SNP [dm6]	C	T	1.132e^-8	0.006	INTRON CG31760
2L	12148885	2L_12148885_SNP [dm3] 2L_12148885_SNP [dm6]	G	A	1.245e^-8	0.006	INTRON CG31760
3R	3992310	3R_3992310_SNP [dm3] 3R_8166588_SNP [dm6]	A	G	1.835e^-8	0.007	INTRON grn	TF binding site mE1_TFBS_chinmo
2L	12150531	2L_12150531_SNP [dm3] 2L_12150531_SNP [dm6]	C	A	3.194e^-8	0.009	INTRON CG31760
2L	19480302	2L_19480302_SNP [dm3] 2L_19480302_SNP [dm6]	A	C	3.468e^-8	0.009	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5037652	2L_5037652_SNP [dm3] 2L_5037652_SNP [dm6]	G	C	4.187e^-8	0.01	UPSTREAM SP555 & 1 other DOWNSTREAM Cg25C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2L	1398897	2L_1398897_SNP [dm3] 2L_1398897_SNP [dm6]	C	A	5.623e^-8	0.012	INTRON lea
2R	10889679	2R_10889679_SNP [dm3] 2R_15002174_SNP [dm6]	C	T	6.672e^-8	0.013	INTERGENIC
2R	7869383	2R_7869383_SNP [dm3] 2R_11981878_SNP [dm6]	G	A	1.034e^-7	0.017	SYNONYMOUS_CODING CG33145	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	16956582	X_16956582_SNP [dm3] X_17062549_SNP [dm6]	G	A	1.112e^-7	0.017	INTRON CG45002
3R	4002225	3R_4002225_SNP [dm3] 3R_8176503_SNP [dm6]	G	A	1.353e^-7	0.02	INTRON grn	TF binding site BDTNP1_TFBS_dl
2R	18777189	2R_18777189_SNP [dm3] 2R_22889666_SNP [dm6]	C	T	1.550e^-7	0.021	SYNONYMOUS_CODING MED23 UPSTREAM Gmer	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19480177	2L_19480177_SNP [dm3] 2L_19480177_SNP [dm6]	A	G	2.053e^-7	0.023	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	18043647	2R_18043647_SNP [dm3] 2R_22156142_SNP [dm6]	A	G	2.088e^-7	0.023	INTRON a	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	18449571	3R_18449571_SNP [dm3] 3R_22623849_SNP [dm6]	G	A	2.234e^-7	0.023	INTRON loco	regulatory region REDfly_CRMs
3R	4021032	3R_4021032_SNP [dm3] 3R_8195310_SNP [dm6]	G	T	2.346e^-7	0.023	INTERGENIC
2R	6535797	2R_6535797_SNP [dm3] 2R_10648292_SNP [dm6]	G	A	2.409e^-7	0.023	NON_SYNONYMOUS_CODING Elp2 UPSTREAM CG12934
2R	7868731	2R_7868731_SNP [dm3] 2R_11981226_SNP [dm6]	G	A	2.469e^-7	0.023	UTR_3_PRIME CG33145 UPSTREAM CG30037	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	14779135	2L_14779135_SNP [dm3] 2L_14779135_SNP [dm6]	C	G	2.724e^-7	0.023	INTERGENIC
2R	18777009	2R_18777009_SNP [dm3] 2R_22889486_SNP [dm6]	G	A	2.822e^-7	0.023	SYNONYMOUS_CODING MED23 UPSTREAM Gmer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2R	6535793	2R_6535793_SNP [dm3] 2R_10648288_SNP [dm6]	C	T	2.872e^-7	0.023	SYNONYMOUS_CODING Elp2 UPSTREAM CG12934
2L	14702724	2L_14702724_SNP [dm3] 2L_14702724_SNP [dm6]	C	G	3.125e^-7	0.024	INTERGENIC
X	12967593	X_12967593_SNP [dm3] X_13073560_SNP [dm6]	G	C	3.489e^-7	0.025	INTRON rad
3L	9453054	3L_9453054_SNP [dm3] 3L_9459954_SNP [dm6]	T	C	3.574e^-7	0.025	NON_SYNONYMOUS_CODING CG3434 DOWNSTREAM CG3552	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	14746406	2L_14746406_SNP [dm3] 2L_14746406_SNP [dm6]	C	T	3.582e^-7	0.025	UPSTREAM CR45460 DOWNSTREAM CR45458 & 1 other INTERGENIC
2L	12230773	2L_12230773_SNP [dm3] 2L_12230773_SNP [dm6]	G	T	3.659e^-7	0.025	INTRON aret
2R	1390984	2R_1390984_SNP [dm3] 2R_5503479_SNP [dm6]	A	G	3.826e^-7	0.025	UTR_3_PRIME TpnC4 INTRON CG30438	TF binding site BDTNP1_TFBS_dl
3R	15680699	3R_15680699_SNP [dm3] 3R_19854977_SNP [dm6]	T	C	4.251e^-7	0.027	SYNONYMOUS_CODING Ire1 DOWNSTREAM CG4662	TF binding site mE1_TFBS_cad
2R	12871626	2R_12871626_DEL [dm3] 2R_16984121_DEL [dm6]	CAGCTGTGTGGGTTTTCGTG...	T	4.516e^-7	0.027	INTRON Cbp53E
2L	12147834	2L_12147834_INS [dm3] 2L_12147834_INS [dm6]	G	GT	4.671e^-7	0.027	INTRON CG31760
3L	11230752	3L_11230752_SNP [dm3] 3L_11237652_SNP [dm6]	A	T	4.784e^-7	0.027	UPSTREAM CR44718 DOWNSTREAM CR44719 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11379964	2L_11379964_SNP [dm3] 2L_11379964_SNP [dm6]	G	A	5.189e^-7	0.029	INTERGENIC	regulatory region REDfly_CRMs
3L	11230777	3L_11230777_SNP [dm3] 3L_11237677_SNP [dm6]	A	G	5.915e^-7	0.032	UPSTREAM CR44718 DOWNSTREAM CR44719 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12974196	X_12974196_SNP [dm3] X_13080163_SNP [dm6]	T	C	6.198e^-7	0.032	UTR_3_PRIME hep	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	24142821	3R_24142821_SNP [dm3] 3R_28317099_SNP [dm6]	T	C	6.892e^-7	0.034	INTERGENIC
3R	10452168	3R_10452168_SNP [dm3] 3R_14626446_SNP [dm6]	A	T	7.074e^-7	0.034	UTR_3_PRIME His4r UPSTREAM put DOWNSTREAM CG7886	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	530572	3R_530572_SNP [dm3] 3R_4704850_SNP [dm6]	A	T	7.170e^-7	0.034	UTR_3_PRIME CG43427 INTRON CG43427	TF binding site mE1_TFBS_bab1
2L	14768425	2L_14768425_SNP [dm3] 2L_14768425_SNP [dm6]	A	G	7.899e^-7	0.036	INTERGENIC
X	12974222	X_12974222_SNP [dm3] X_13080189_SNP [dm6]	T	G	8.047e^-7	0.036	UTR_3_PRIME hep	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5945421	3L_5945421_SNP [dm3] 3L_5952321_SNP [dm6]	G	T	8.143e^-7	0.036	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12230766	2L_12230766_INS [dm3] 2L_12230766_INS [dm6]	T	TAT	8.279e^-7	0.036	INTRON aret
2L	13920167	2L_13920167_SNP [dm3] 2L_13920167_SNP [dm6]	C	A	8.891e^-7	0.038	DOWNSTREAM CG16886 INTRON Ance-3
2R	18354760	2R_18354760_SNP [dm3] 2R_22467255_SNP [dm6]	A	G	9.941e^-7	0.041	INTRON CG10384	TF binding site mE1_TFBS_chinmo mE1_TFBS_sbb
2R	18354833	2R_18354833_SNP [dm3] 2R_22467328_SNP [dm6]	T	A	9.941e^-7	0.041	INTRON CG10384	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sbb
3L	9349123	3L_9349123_SNP [dm3] 3L_9356023_SNP [dm6]	C	T	1.043e^-6	0.042	DOWNSTREAM CG32040 INTRON UGP
3L	7751738	3L_7751738_DEL [dm3] 3L_7758638_DEL [dm6]	GTAC	G	1.105e^-6	0.043	INTRON CG32373	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12289939	2L_12289939_SNP [dm3] 2L_12289939_SNP [dm6]	C	T	1.146e^-6	0.044	INTRON aret	TF binding site BDTNP1_TFBS_twi
X	11310865	X_11310865_SNP [dm3] X_11416832_SNP [dm6]	C	G	1.170e^-6	0.044	UPSTREAM Gr10a INTRON Or10a
2L	2750607	2L_2750607_SNP [dm3] 2L_2750607_SNP [dm6]	A	T	1.269e^-6	0.046	UPSTREAM Pgk INTRON Pgk	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1396047	2L_1396047_SNP [dm3] 2L_1396047_SNP [dm6]	C	T	1.305e^-6	0.046	INTRON lea
X	13463880	X_13463880_SNP [dm3] X_13569847_SNP [dm6]	T	A	1.363e^-6	0.046	INTRON Tango13
2L	12293720	2L_12293720_SNP [dm3] 2L_12293720_SNP [dm6]	A	G	1.399e^-6	0.046	INTRON aret	TF binding site mE1_TFBS_HSA
2L	14743375	2L_14743375_SNP [dm3] 2L_14743375_SNP [dm6]	C	A	1.404e^-6	0.046	INTRON CG34166	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10605069	2L_10605069_DEL [dm3] 2L_10605069_DEL [dm6]	AG	A	1.412e^-6	0.046	INTRON Trim9	TF binding site BDTNP1_TFBS_twi
X	13463117	X_13463117_SNP [dm3] X_13569084_SNP [dm6]	G	A	1.420e^-6	0.046	INTRON Tango13
3L	6575049	3L_6575049_SNP [dm3] 3L_6581949_SNP [dm6]	G	C	1.431e^-6	0.046	INTRON CG18769 & 1 other
3R	4864729	3R_4864729_SNP [dm3] 3R_9039007_SNP [dm6]	G	A	1.432e^-6	0.046	UPSTREAM hyx INTRON neur & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	9453022	3L_9453022_SNP [dm3] 3L_9459922_SNP [dm6]	C	T	1.506e^-6	0.046	NON_SYNONYMOUS_CODING CG3434 DOWNSTREAM CG3552	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	2920377	3L_2920377_SNP [dm3] 3L_2920377_SNP [dm6]	T	C	1.519e^-6	0.046	INTRON Shab
2R	18776463	2R_18776463_SNP [dm3] 2R_22888940_SNP [dm6]	C	A	1.542e^-6	0.046	UTR_5_PRIME MED23 UPSTREAM Gmer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2R	18776464	2R_18776464_SNP [dm3] 2R_22888941_SNP [dm6]	C	T	1.542e^-6	0.046	UTR_5_PRIME MED23 UPSTREAM Gmer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3L	2989358	3L_2989358_INS [dm3] 3L_2989358_INS [dm6]	A	ATACA	1.562e^-6	0.046	INTERGENIC
2R	1390165	2R_1390165_SNP [dm3] 2R_5502660_SNP [dm6]	T	G	1.598e^-6	0.046	DOWNSTREAM TpnC4 INTRON CG30438	transposable element FlyBase
3R	14804899	3R_14804899_SNP [dm3] 3R_18979177_SNP [dm6]	C	T	1.627e^-6	0.046	UPSTREAM CG12269 INTRON Smu1	TF binding site mE1_TFBS_sens
2L	12276643	2L_12276643_SNP [dm3] 2L_12276643_SNP [dm6]	A	G	1.665e^-6	0.046	INTRON aret
2L	12349731	2L_12349731_SNP [dm3] 2L_12349731_SNP [dm6]	T	A	1.687e^-6	0.046	INTRON bru-2
2L	14746558	2L_14746558_SNP [dm3] 2L_14746558_SNP [dm6]	G	T	1.697e^-6	0.046	DOWNSTREAM CR45458 & 1 other INTERGENIC
2L	14746547	2L_14746547_DEL [dm3] 2L_14746547_DEL [dm6]	TTT	T	1.736e^-6	0.046	DOWNSTREAM CR45458 & 1 other INTERGENIC
3R	10452170	3R_10452170_SNP [dm3] 3R_14626448_SNP [dm6]	A	G	1.775e^-6	0.046	UTR_3_PRIME His4r UPSTREAM put DOWNSTREAM CG7886	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	16956668	X_16956668_DEL [dm3] X_17062635_DEL [dm6]	AA	T	1.808e^-6	0.046	INTRON CG45002
2L	14714434	2L_14714434_SNP [dm3] 2L_14714434_SNP [dm6]	T	A	1.836e^-6	0.046	UTR_3_PRIME CG34165 DOWNSTREAM CG34165
3R	4914107	3R_4914107_SNP [dm3] 3R_9088385_SNP [dm6]	C	G	1.853e^-6	0.046	INTRON pum
2R	6536316	2R_6536316_SNP [dm3] 2R_10648811_SNP [dm6]	C	A	1.904e^-6	0.046	UPSTREAM CG12934 DOWNSTREAM Elp2 INTERGENIC
2L	10580968	2L_10580968_SNP [dm3] 2L_10580968_SNP [dm6]	G	T	1.946e^-6	0.046	UTR_3_PRIME CG34161 DOWNSTREAM CG34161 & 1 other INTRON Trim9
3R	4913986	3R_4913986_SNP [dm3] 3R_9088264_SNP [dm6]	T	G	1.954e^-6	0.046	INTRON pum
2L	10578150	2L_10578150_SNP [dm3] 2L_10578150_SNP [dm6]	T	C	1.983e^-6	0.046	UPSTREAM w-cup INTRON Trim9
2L	12355390	2L_12355390_SNP [dm3] 2L_12355390_SNP [dm6]	T	A	2.040e^-6	0.046	INTRON bru-2
2L	12140286	2L_12140286_DEL [dm3] 2L_12140286_DEL [dm6]	TG	T	2.078e^-6	0.046	UTR_3_PRIME Gr33a
X	5593480	X_5593480_DEL [dm3] X_5699447_DEL [dm6]	CT	C	2.088e^-6	0.046	INTRON CG4096	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14455490	2L_14455490_SNP [dm3] 2L_14455490_SNP [dm6]	A	G	2.101e^-6	0.046	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	6844615	2L_6844615_SNP [dm3] 2L_6844615_SNP [dm6]	C	A	2.178e^-6	0.046	INTERGENIC
3R	4023008	3R_4023008_SNP [dm3] 3R_8197286_SNP [dm6]	C	G	2.192e^-6	0.046	DOWNSTREAM CR43302 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10590294	2L_10590294_SNP [dm3] 2L_10590294_SNP [dm6]	C	T	2.220e^-6	0.046	INTRON Trim9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
X	21870702	X_21870702_SNP [dm3] X_22468866_SNP [dm6]	G	A	2.224e^-6	0.046	UTR_3_PRIME CG14619 DOWNSTREAM CG14619
2R	18365428	2R_18365428_SNP [dm3] 2R_22477923_SNP [dm6]	T	G	2.237e^-6	0.046	UPSTREAM CG45063 & 1 other INTERGENIC
2L	11094993	2L_11094993_SNP [dm3] 2L_11094993_SNP [dm6]	A	T	2.248e^-6	0.046	UTR_3_PRIME CG4705 DOWNSTREAM Ge-1
2L	12315623	2L_12315623_SNP [dm3] 2L_12315623_SNP [dm6]	A	T	2.274e^-6	0.046	DOWNSTREAM CR45282 & 1 other INTERGENIC
2L	12315660	2L_12315660_DEL [dm3] 2L_12315660_DEL [dm6]	TACT	T	2.274e^-6	0.046	DOWNSTREAM CR45282 & 1 other INTERGENIC
2L	12315667	2L_12315667_SNP [dm3] 2L_12315667_SNP [dm6]	A	G	2.274e^-6	0.046	DOWNSTREAM CR45282 & 1 other INTERGENIC
2L	12315672	2L_12315672_SNP [dm3] 2L_12315672_SNP [dm6]	T	A	2.274e^-6	0.046	DOWNSTREAM CR45282 & 1 other INTERGENIC
2L	12367353	2L_12367353_SNP [dm3] 2L_12367353_SNP [dm6]	G	C	2.274e^-6	0.046	INTRON bru-2	TF binding site BDTNP1_TFBS_twi
2L	12315643	2L_12315643_SNP [dm3] 2L_12315643_SNP [dm6]	T	C	2.305e^-6	0.046	DOWNSTREAM CR45282 & 1 other INTERGENIC
2L	12229805	2L_12229805_SNP [dm3] 2L_12229805_SNP [dm6]	C	T	2.379e^-6	0.046	INTRON aret
3R	10451792	3R_10451792_SNP [dm3] 3R_14626070_SNP [dm6]	A	T	2.388e^-6	0.046	SYNONYMOUS_CODING His4r UPSTREAM put DOWNSTREAM CG7886	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	12355419	2L_12355419_SNP [dm3] 2L_12355419_SNP [dm6]	A	G	2.421e^-6	0.046	INTRON bru-2
2L	12315665	2L_12315665_SNP [dm3] 2L_12315665_SNP [dm6]	A	C	2.421e^-6	0.046	DOWNSTREAM CR45282 & 1 other INTERGENIC
2L	12276408	2L_12276408_SNP [dm3] 2L_12276408_SNP [dm6]	A	T	2.582e^-6	0.049	INTRON aret
2L	10646121	2L_10646121_DEL [dm3] 2L_10646121_DEL [dm6]	CTCCCT	GAA	2.680e^-6	0.05	UPSTREAM CG17097 DOWNSTREAM CG18284 INTERGENIC
3L	7751744	3L_7751744_DEL [dm3] 3L_7758644_DEL [dm6]	TGTACAA	T	2.726e^-6	0.05	INTRON CG32373	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7751757	3L_7751757_SNP [dm3] 3L_7758657_SNP [dm6]	T	G	2.726e^-6	0.05	INTRON CG32373	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	4929908	3R_4929908_SNP [dm3] 3R_9104186_SNP [dm6]	A	G	2.871e^-6	0.052	INTRON pum
X	16956584	X_16956584_INS [dm3] X_17062551_INS [dm6]	T	TAAT	3.060e^-6	0.054	INTRON CG45002
2L	12355364	2L_12355364_SNP [dm3] 2L_12355364_SNP [dm6]	A	T	3.066e^-6	0.054	INTRON bru-2
2L	13947278	2L_13947278_SNP [dm3] 2L_13947278_SNP [dm6]	G	T	3.146e^-6	0.054	INTRON Ance-3 & 1 other
2L	12240611	2L_12240611_SNP [dm3] 2L_12240611_SNP [dm6]	C	T	3.150e^-6	0.054	INTRON aret
2L	12405889	2L_12405889_INS [dm3] 2L_12405889_INS [dm6]	A	AA	3.165e^-6	0.054	INTRON vir-1
2L	12382063	2L_12382063_SNP [dm3] 2L_12382063_SNP [dm6]	T	G	3.172e^-6	0.054	INTRON bru-2
2L	5032475	2L_5032475_SNP [dm3] 2L_5032475_SNP [dm6]	T	A	3.172e^-6	0.054	INTRON Cg25C	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
3L	7751761	3L_7751761_SNP [dm3] 3L_7758661_SNP [dm6]	T	C	3.186e^-6	0.054	INTRON CG32373	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	4875979	3R_4875979_SNP [dm3] 3R_9050257_SNP [dm6]	A	T	3.283e^-6	0.055	UPSTREAM Mst85C INTRON Nmdmc & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	5044744	2L_5044744_SNP [dm3] 2L_5044744_SNP [dm6]	C	T	3.314e^-6	0.055	UPSTREAM CG31650 & 2 others INTRON CG44000 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	13463103	X_13463103_SNP [dm3] X_13569070_SNP [dm6]	A	G	3.394e^-6	0.055	INTRON Tango13
2L	13926470	2L_13926470_SNP [dm3] 2L_13926470_SNP [dm6]	G	T	3.395e^-6	0.055	INTRON Ance-3
2L	14714418	2L_14714418_SNP [dm3] 2L_14714418_SNP [dm6]	C	T	3.402e^-6	0.055	UTR_3_PRIME CG34165 DOWNSTREAM CG34165
3R	4864939	3R_4864939_SNP [dm3] 3R_9039217_SNP [dm6]	C	T	3.477e^-6	0.056	UTR_5_PRIME neur UPSTREAM hyx INTRON hyx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2L	14714381	2L_14714381_SNP [dm3] 2L_14714381_SNP [dm6]	T	A	3.499e^-6	0.056	UTR_3_PRIME CG34165 DOWNSTREAM CG34165
2L	12197560	2L_12197560_SNP [dm3] 2L_12197560_SNP [dm6]	T	C	3.555e^-6	0.056	INTRON aret
X	16956583	X_16956583_SNP [dm3] X_17062550_SNP [dm6]	T	A	3.654e^-6	0.056	INTRON CG45002
2L	14702137	2L_14702137_INS [dm3] 2L_14702137_INS [dm6]	T	TAG	3.715e^-6	0.056	INTERGENIC
2L	14714408	2L_14714408_SNP [dm3] 2L_14714408_SNP [dm6]	C	A	3.724e^-6	0.056	UTR_3_PRIME CG34165 DOWNSTREAM CG34165
3R	351901	3R_351901_DEL [dm3] 3R_4526179_DEL [dm6]	ATTGATTCGCATTTGATAAA...	A	3.738e^-6	0.056	INTRON CG34357
2L	1384755	2L_1384755_SNP [dm3] 2L_1384755_SNP [dm6]	A	T	3.746e^-6	0.056	INTRON lea
2L	17513820	2L_17513820_SNP [dm3] 2L_17513820_SNP [dm6]	C	T	3.759e^-6	0.056	INTRON Dhc36C	TF binding site BDTNP1_TFBS_twi
3L	10996492	3L_10996492_SNP [dm3] 3L_11003392_SNP [dm6]	G	A	3.836e^-6	0.057	INTRON klu
2R	6536276	2R_6536276_SNP [dm3] 2R_10648771_SNP [dm6]	G	C	3.870e^-6	0.057	UPSTREAM CG12934 DOWNSTREAM Elp2 INTERGENIC
X	21870734	X_21870734_DEL [dm3] X_22468898_DEL [dm6]	AAAAA	A	3.905e^-6	0.057	UTR_3_PRIME CG14619 DOWNSTREAM CG14619
2L	3670578	2L_3670578_SNP [dm3] 2L_3670578_SNP [dm6]	G	A	4.057e^-6	0.058	START_GAINED Sfp24Bc UTR_5_PRIME Sfp24Bc UPSTREAM Sfp24Bb INTRON CG34340
2L	14768307	2L_14768307_SNP [dm3] 2L_14768307_SNP [dm6]	T	G	4.093e^-6	0.058	INTERGENIC
3L	11230741	3L_11230741_SNP [dm3] 3L_11237641_SNP [dm6]	A	C	4.101e^-6	0.058	UPSTREAM CR44718 DOWNSTREAM CR44719 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6363983	3L_6363983_SNP [dm3] 3L_6370883_SNP [dm6]	C	T	4.106e^-6	0.058	UPSTREAM CR45419 INTERGENIC
2L	4885320	2L_4885320_SNP [dm3] 2L_4885320_SNP [dm6]	G	C	4.147e^-6	0.058	SYNONYMOUS_CODING CG3008
2L	5042338	2L_5042338_SNP [dm3] 2L_5042338_SNP [dm6]	C	T	4.176e^-6	0.058	UPSTREAM CG33995 & 2 others INTRON CG31650	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv
2L	12301499	2L_12301499_SNP [dm3] 2L_12301499_SNP [dm6]	G	C	4.272e^-6	0.059	INTRON aret
3R	4669186	3R_4669186_SNP [dm3] 3R_8843464_SNP [dm6]	C	A	4.290e^-6	0.059	INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12165195	2L_12165195_SNP [dm3] 2L_12165195_SNP [dm6]	A	C	4.317e^-6	0.059	NON_SYNONYMOUS_CODING ZnT33D INTRON CG31760
2L	13947316	2L_13947316_SNP [dm3] 2L_13947316_SNP [dm6]	C	T	4.412e^-6	0.06	INTRON Ance-3 & 1 other
2R	19070594	2R_19070594_SNP [dm3] 2R_23183071_SNP [dm6]	G	A	4.471e^-6	0.06	UPSTREAM CG13539 INTRON CG34371
2L	13947108	2L_13947108_SNP [dm3] 2L_13947108_SNP [dm6]	T	A	4.497e^-6	0.06	UTR_5_PRIME CG16884 INTRON Ance-3
2R	6535723	2R_6535723_SNP [dm3] 2R_10648218_SNP [dm6]	G	A	4.594e^-6	0.061	NON_SYNONYMOUS_CODING Elp2 UPSTREAM CG12934
3L	9461611	3L_9461611_SNP [dm3] 3L_9468511_SNP [dm6]	A	C	4.679e^-6	0.062	INTRON CG44838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20102669	2L_20102669_SNP [dm3] 2L_20102669_SNP [dm6]	T	A	4.704e^-6	0.062	UTR_3_PRIME Kua DOWNSTREAM CG13970
2L	12361506	2L_12361506_SNP [dm3] 2L_12361506_SNP [dm6]	G	T	4.823e^-6	0.063	INTRON bru-2	TF binding site BDTNP1_TFBS_twi
2L	14464762	2L_14464762_SNP [dm3] 2L_14464762_SNP [dm6]	C	A	4.948e^-6	0.063	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3476669	2L_3476669_SNP [dm3] 2L_3476669_SNP [dm6]	T	C	4.955e^-6	0.063	UPSTREAM CR43928 DOWNSTREAM CR45372 EXON CR43928	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	4344613	X_4344613_SNP [dm3] X_4450580_SNP [dm6]	G	T	4.963e^-6	0.063	INTRON CR32773 & 1 other
2R	13763842	2R_13763842_SNP [dm3] 2R_17876337_SNP [dm6]	C	T	5.107e^-6	0.065	INTRON Elk
2R	6536040	2R_6536040_SNP [dm3] 2R_10648535_SNP [dm6]	C	G	5.130e^-6	0.065	SYNONYMOUS_CODING Elp2 UPSTREAM CG12934
3R	4912745	3R_4912745_SNP [dm3] 3R_9087023_SNP [dm6]	C	T	5.161e^-6	0.065	INTRON pum
X	21870724	X_21870724_SNP [dm3] X_22468888_SNP [dm6]	A	G	5.218e^-6	0.065	UTR_3_PRIME CG14619 DOWNSTREAM CG14619
2L	5028661	2L_5028661_SNP [dm3] 2L_5028661_SNP [dm6]	A	T	5.235e^-6	0.065	UPSTREAM vkg & 1 other INTERGENIC	regulatory region REDfly_CRMs
2L	14746532	2L_14746532_SNP [dm3] 2L_14746532_SNP [dm6]	T	C	5.320e^-6	0.065	UPSTREAM CR45460 DOWNSTREAM CR45458 & 1 other INTERGENIC
2L	12363272	2L_12363272_SNP [dm3] 2L_12363272_SNP [dm6]	C	T	5.541e^-6	0.067	INTRON bru-2
3L	13819144	3L_13819144_SNP [dm3] 3L_13826044_SNP [dm6]	C	T	5.757e^-6	0.07	INTERGENIC
2L	10668901	2L_10668901_SNP [dm3] 2L_10668901_SNP [dm6]	C	A	5.936e^-6	0.071	SYNONYMOUS_CODING CG31871
X	12974934	X_12974934_SNP [dm3] X_13080901_SNP [dm6]	G	A	6.029e^-6	0.072	SYNONYMOUS_CODING hep UTR_3_PRIME hep	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4071356	2L_4071356_SNP [dm3] 2L_4071356_SNP [dm6]	G	T	6.110e^-6	0.073	INTRON ed	TF binding site mE1_TFBS_sens
2R	6534455	2R_6534455_SNP [dm3] 2R_10646950_SNP [dm6]	G	A	6.231e^-6	0.074	SYNONYMOUS_CODING Elp2	TF binding site mE1_TFBS_sens
X	8725040	X_8725040_SNP [dm3] X_8831007_SNP [dm6]	G	A	6.415e^-6	0.075	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20354549	X_20354549_SNP [dm3] X_20483522_SNP [dm6]	A	G	6.502e^-6	0.076	INTRON RhoGAP19D
3R	15687646	3R_15687646_SNP [dm3] 3R_19861924_SNP [dm6]	C	G	6.770e^-6	0.078	SYNONYMOUS_CODING CG11447 UPSTREAM Ire1 DOWNSTREAM CG4572	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	10646174	2L_10646174_DEL [dm3] 2L_10646174_DEL [dm6]	AAGTAGCCAAATCTATA...	A	6.836e^-6	0.078	UPSTREAM CG17097 DOWNSTREAM CG18284 INTERGENIC
2L	11353959	2L_11353959_DEL [dm3] 2L_11353959_DEL [dm6]	ATTA	A	6.923e^-6	0.078	UPSTREAM CR44586 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4497835	2R_4497835_SNP [dm3] 2R_8610330_SNP [dm6]	C	T	6.930e^-6	0.078	SYNONYMOUS_CODING rgr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	11296262	2L_11296262_SNP [dm3] 2L_11296262_SNP [dm6]	T	A	6.943e^-6	0.078	INTERGENIC
2L	9180427	2L_9180427_SNP [dm3] 2L_9180427_SNP [dm6]	G	A	7.245e^-6	0.08	INTRON tai
2R	1387110	2R_1387110_SNP [dm3] 2R_5499605_SNP [dm6]	A	T	7.252e^-6	0.08	INTRON CG30438
2L	12103769	2L_12103769_SNP [dm3] 2L_12103769_SNP [dm6]	G	T	7.271e^-6	0.08	UTR_5_PRIME Aats-thr UPSTREAM Aats-thr & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	6534419	2R_6534419_SNP [dm3] 2R_10646914_SNP [dm6]	T	G	7.312e^-6	0.08	SYNONYMOUS_CODING Elp2	TF binding site mE1_TFBS_sens
2L	11175868	2L_11175868_SNP [dm3] 2L_11175868_SNP [dm6]	T	C	7.381e^-6	0.08	INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	14458481	2L_14458481_SNP [dm3] 2L_14458481_SNP [dm6]	G	T	7.395e^-6	0.08	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	7865938	2R_7865938_SNP [dm3] 2R_11978433_SNP [dm6]	G	C	7.446e^-6	0.08	NON_SYNONYMOUS_CODING CG30036 DOWNSTREAM CG8290 & 1 other	TF binding site mE1_TFBS_sens
2R	12870444	2R_12870444_SNP [dm3] 2R_16982939_SNP [dm6]	T	G	7.456e^-6	0.08	INTRON Cbp53E
2L	13947331	2L_13947331_SNP [dm3] 2L_13947331_SNP [dm6]	C	A	7.540e^-6	0.081	INTRON Ance-3 & 1 other
X	11203669	X_11203669_SNP [dm3] X_11309636_SNP [dm6]	G	T	7.744e^-6	0.082	INTRON Ir10a
2L	10410515	2L_10410515_SNP [dm3] 2L_10410515_SNP [dm6]	G	A	7.748e^-6	0.082	DOWNSTREAM CG5355 & 2 others INTERGENIC
2L	14743241	2L_14743241_SNP [dm3] 2L_14743241_SNP [dm6]	T	G	7.781e^-6	0.082	UTR_5_PRIME CG34166 UPSTREAM CG34166	TF binding site mE1_TFBS_cad
2L	13947307	2L_13947307_SNP [dm3] 2L_13947307_SNP [dm6]	A	G	7.898e^-6	0.083	INTRON Ance-3 & 1 other
2L	7477674	2L_7477674_SNP [dm3] 2L_7477674_SNP [dm6]	C	T	7.930e^-6	0.083	SYNONYMOUS_CODING Ziz DOWNSTREAM CG6441	TF binding site mE1_TFBS_cad
2L	14689608	2L_14689608_SNP [dm3] 2L_14689608_SNP [dm6]	A	G	7.963e^-6	0.083	UPSTREAM osp INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	11288970	2R_11288970_SNP [dm3] 2R_15401465_SNP [dm6]	A	G	8.068e^-6	0.083	UTR_5_PRIME CG43729
X	10275170	X_10275170_SNP [dm3] X_10381137_SNP [dm6]	G	T	8.152e^-6	0.084	SYNONYMOUS_CODING CG32681 INTRON CG17841	TF binding site mE1_TFBS_chinmo
2L	14774883	2L_14774883_SNP [dm3] 2L_14774883_SNP [dm6]	T	A	8.198e^-6	0.084	NON_SYNONYMOUS_CODING CG4650
3L	18482213	3L_18482213_SNP [dm3] 3L_18489113_SNP [dm6]	T	G	8.272e^-6	0.084	INTRON AstC-R2
3L	3709578	3L_3709578_SNP [dm3] 3L_3709578_SNP [dm6]	A	T	8.434e^-6	0.084	DOWNSTREAM CR45675 INTERGENIC
3R	16997262	3R_16997262_SNP [dm3] 3R_21171540_SNP [dm6]	A	T	8.450e^-6	0.084	INTRON SNF4Agamma
3R	4118839	3R_4118839_SNP [dm3] 3R_8293117_SNP [dm6]	G	A	8.453e^-6	0.084	NON_SYNONYMOUS_CODING CG31463 DOWNSTREAM CG9626	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	11203673	X_11203673_SNP [dm3] X_11309640_SNP [dm6]	T	A	8.572e^-6	0.084	INTRON Ir10a
2R	6534461	2R_6534461_SNP [dm3] 2R_10646956_SNP [dm6]	A	G	8.586e^-6	0.084	SYNONYMOUS_CODING Elp2	TF binding site mE1_TFBS_sens
2R	18726573	2R_18726573_SNP [dm3] 2R_22839050_SNP [dm6]	C	A	8.646e^-6	0.084	INTRON CG9825	TF binding site mE1_TFBS_cad
2L	12245850	2L_12245850_SNP [dm3] 2L_12245850_SNP [dm6]	C	A	8.669e^-6	0.084	INTRON aret
2L	14313877	2L_14313877_SNP [dm3] 2L_14313877_SNP [dm6]	A	G	8.705e^-6	0.084	INTRON wb
2R	6535722	2R_6535722_SNP [dm3] 2R_10648217_SNP [dm6]	T	A	8.736e^-6	0.084	NON_SYNONYMOUS_CODING Elp2 UPSTREAM CG12934
3L	12090102	3L_12090102_SNP [dm3] 3L_12097002_SNP [dm6]	A	G	8.764e^-6	0.084	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19082458	2R_19082458_SNP [dm3] 2R_23194935_SNP [dm6]	C	T	8.771e^-6	0.084	INTRON CG34371	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10939647	2L_10939647_SNP [dm3] 2L_10939647_SNP [dm6]	T	C	8.862e^-6	0.084	INTRON dpr2
3L	8660608	3L_8660608_SNP [dm3] 3L_8667508_SNP [dm6]	G	A	8.876e^-6	0.084	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_Kr
X	12977783	X_12977783_INS [dm3] X_13083750_INS [dm6]	T	TCTTCAAATGTCAAAACAAG...	8.983e^-6	0.085	INTRON hep
2L	11828712	2L_11828712_SNP [dm3] 2L_11828712_SNP [dm6]	G	A	9.070e^-6	0.085	INTRON Pde1c & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	12046549	2L_12046549_SNP [dm3] 2L_12046549_SNP [dm6]	C	T	9.094e^-6	0.085	UPSTREAM CG6770 DOWNSTREAM Plzf EXON CR44589	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	13625791	2L_13625791_SNP [dm3] 2L_13625791_SNP [dm6]	C	T	9.112e^-6	0.085	INTRON kuz
2L	14743288	2L_14743288_SNP [dm3] 2L_14743288_SNP [dm6]	C	A	9.171e^-6	0.085	UTR_5_PRIME CG34166	TF binding site mE1_TFBS_cad
2L	11599051	2L_11599051_SNP [dm3] 2L_11599051_SNP [dm6]	A	T	9.298e^-6	0.085	INTRON kek2
3L	14584164	3L_14584164_SNP [dm3] 3L_14591064_SNP [dm6]	C	T	9.335e^-6	0.085	INTRON HGTX
3L	19230547	3L_19230547_DEL [dm3] 3L_19237447_DEL [dm6]	TGTAT	T	9.403e^-6	0.086	DOWNSTREAM CG33647 INTERGENIC
3L	18649782	3L_18649782_SNP [dm3] 3L_18656682_SNP [dm6]	C	A	9.446e^-6	0.086	INTRON MYPT-75D
3L	11351563	3L_11351563_SNP [dm3] 3L_11358463_SNP [dm6]	C	T	9.548e^-6	0.086	INTERGENIC
3L	13819145	3L_13819145_SNP [dm3] 3L_13826045_SNP [dm6]	A	G	9.630e^-6	0.086	INTERGENIC
2L	7479052	2L_7479052_SNP [dm3] 2L_7479052_SNP [dm6]	C	A	9.676e^-6	0.086	SYNONYMOUS_CODING Ziz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8660603	3L_8660603_SNP [dm3] 3L_8667503_SNP [dm6]	T	G	9.708e^-6	0.086	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_Kr
2L	16852277	2L_16852277_SNP [dm3] 2L_16852277_SNP [dm6]	C	G	9.764e^-6	0.086	NON_SYNONYMOUS_CODING CG31810	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12870917	2R_12870917_SNP [dm3] 2R_16983412_SNP [dm6]	G	A	1.005e^-5	0.089	INTRON Cbp53E
2L	11761808	2L_11761808_SNP [dm3] 2L_11761808_SNP [dm6]	G	T	1.021e^-5	0.089	INTERGENIC
3L	15504343	3L_15504343_SNP [dm3] 3L_15511243_SNP [dm6]	G	C	1.033e^-5	0.089	UPSTREAM Eip71CD DOWNSTREAM gdl-ORF39 & 1 other INTRON Eip71CD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	11175974	2L_11175974_SNP [dm3] 2L_11175974_SNP [dm6]	T	G	1.039e^-5	0.089	INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl
2L	12103210	2L_12103210_SNP [dm3] 2L_12103210_SNP [dm6]	T	C	1.040e^-5	0.089	UTR_5_PRIME Patsas UPSTREAM Aats-thr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_Ubx
3L	12084251	3L_12084251_SNP [dm3] 3L_12091151_SNP [dm6]	C	T	1.048e^-5	0.089	INTERGENIC
2L	12405875	2L_12405875_DEL [dm3] 2L_12405875_DEL [dm6]	AA	A	1.050e^-5	0.089	INTRON vir-1
X	12361518	X_12361518_SNP [dm3] X_12467485_SNP [dm6]	A	C	1.052e^-5	0.089	INTRON CG42258	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19082330	2R_19082330_SNP [dm3] 2R_23194807_SNP [dm6]	G	A	1.068e^-5	0.089	INTRON CG34371	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4071510	2L_4071510_SNP [dm3] 2L_4071510_SNP [dm6]	G	T	1.071e^-5	0.089	INTRON ed	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7679714	2L_7679714_SNP [dm3] 2L_7679714_SNP [dm6]	G	A	1.071e^-5	0.089	INTRON Myo28B1
2R	1388833	2R_1388833_SNP [dm3] 2R_5501328_SNP [dm6]	G	C	1.081e^-5	0.089	INTRON CG30438	transposable element FlyBase
2L	14714345	2L_14714345_SNP [dm3] 2L_14714345_SNP [dm6]	A	C	1.084e^-5	0.089	UTR_3_PRIME CG34165
3L	2887547	3L_2887547_SNP [dm3] 3L_2887547_SNP [dm6]	T	C	1.086e^-5	0.089	INTRON spz5
3R	14804892	3R_14804892_SNP [dm3] 3R_18979170_SNP [dm6]	T	A	1.088e^-5	0.089	UPSTREAM CG12269 INTRON Smu1	TF binding site mE1_TFBS_sens
3R	14804893	3R_14804893_SNP [dm3] 3R_18979171_SNP [dm6]	A	C	1.088e^-5	0.089	UPSTREAM CG12269 INTRON Smu1	TF binding site mE1_TFBS_sens
2L	10590254	2L_10590254_SNP [dm3] 2L_10590254_SNP [dm6]	A	C	1.094e^-5	0.089	INTRON Trim9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	10590284	2L_10590284_SNP [dm3] 2L_10590284_SNP [dm6]	C	T	1.094e^-5	0.089	INTRON Trim9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	7995455	3L_7995455_SNP [dm3] 3L_8002355_SNP [dm6]	T	A	1.104e^-5	0.09	INTRON nmo
2L	11885513	2L_11885513_SNP [dm3] 2L_11885513_SNP [dm6]	G	A	1.109e^-5	0.09	INTRON Pde1c	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	19070600	2R_19070600_SNP [dm3] 2R_23183077_SNP [dm6]	C	T	1.115e^-5	0.09	UPSTREAM CG13539 INTRON CG34371
2L	15841714	2L_15841714_SNP [dm3] 2L_15841714_SNP [dm6]	G	T	1.117e^-5	0.09	UPSTREAM CR45694 INTERGENIC
3R	9965920	3R_9965920_SNP [dm3] 3R_14140198_SNP [dm6]	C	G	1.127e^-5	0.09	INTERGENIC
2R	9240613	2R_9240613_SNP [dm3] 2R_13353108_SNP [dm6]	T	A	1.134e^-5	0.09	DOWNSTREAM CG17048 INTRON CR44206
3L	12084258	3L_12084258_INS [dm3] 3L_12091158_INS [dm6]	A	ATGTA	1.144e^-5	0.091	INTERGENIC
2L	3954163	2L_3954163_SNP [dm3] 2L_3954163_SNP [dm6]	A	G	1.155e^-5	0.091	INTRON fred
2L	11168882	2L_11168882_SNP [dm3] 2L_11168882_SNP [dm6]	A	C	1.160e^-5	0.091	UPSTREAM Ca-beta INTRON Ca-beta	TF binding site mE1_TFBS_Trl
2L	9435920	2L_9435920_SNP [dm3] 2L_9435920_SNP [dm6]	C	A	1.178e^-5	0.092	SYNONYMOUS_CODING CG3769 UPSTREAM RpS28-like DOWNSTREAM scat	TF binding site BDTNP1_TFBS_dl
2R	6534361	2R_6534361_SNP [dm3] 2R_10646856_SNP [dm6]	A	T	1.183e^-5	0.092	SPLICE_SITE_REGION Elp2 INTRON Elp2	TF binding site mE1_TFBS_sens
X	11203663	X_11203663_SNP [dm3] X_11309630_SNP [dm6]	T	A	1.184e^-5	0.092	INTRON Ir10a
3R	4886292	3R_4886292_SNP [dm3] 3R_9060570_SNP [dm6]	C	A	1.189e^-5	0.092	INTRON Kdm2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12103206	2L_12103206_SNP [dm3] 2L_12103206_SNP [dm6]	G	A	1.209e^-5	0.092	UTR_5_PRIME Patsas UPSTREAM Aats-thr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_Ubx
X	22143511	X_22143511_SNP [dm3] X_22741675_SNP [dm6]	T	A	1.211e^-5	0.092	INTRON CR44997
2R	1386475	2R_1386475_SNP [dm3] 2R_5498970_SNP [dm6]	A	T	1.212e^-5	0.092	INTRON CG30438
2L	9654904	2L_9654904_SNP [dm3] 2L_9654904_SNP [dm6]	C	T	1.218e^-5	0.092	SYNONYMOUS_CODING Apoltp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7475434	2L_7475434_SNP [dm3] 2L_7475434_SNP [dm6]	C	T	1.233e^-5	0.092	SYNONYMOUS_CODING CG6441 INTRON Ziz
3R	4921217	3R_4921217_SNP [dm3] 3R_9095495_SNP [dm6]	T	C	1.235e^-5	0.092	INTRON pum
2L	5860528	2L_5860528_SNP [dm3] 2L_5860528_SNP [dm6]	T	C	1.237e^-5	0.092	SYNONYMOUS_CODING rau	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2R	16388657	2R_16388657_SNP [dm3] 2R_20501152_SNP [dm6]	C	A	1.241e^-5	0.092	INTERGENIC	regulatory region REDfly_CRMs
2L	12382074	2L_12382074_SNP [dm3] 2L_12382074_SNP [dm6]	A	G	1.241e^-5	0.092	INTRON bru-2
3R	10088178	3R_10088178_SNP [dm3] 3R_14262456_SNP [dm6]	G	A	1.262e^-5	0.094	UTR_5_PRIME CG14839 UPSTREAM CG14841 DOWNSTREAM trx	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11827290	2L_11827290_SNP [dm3] 2L_11827290_SNP [dm6]	A	T	1.273e^-5	0.094	UTR_3_PRIME esc INTRON Pde1c
2L	11310786	2L_11310786_SNP [dm3] 2L_11310786_SNP [dm6]	G	A	1.279e^-5	0.094	INTERGENIC
2L	13314954	2L_13314954_SNP [dm3] 2L_13314954_SNP [dm6]	C	T	1.282e^-5	0.094	INTRON CG43778
2R	6534458	2R_6534458_SNP [dm3] 2R_10646953_SNP [dm6]	T	A	1.283e^-5	0.094	SYNONYMOUS_CODING Elp2	TF binding site mE1_TFBS_sens
2L	10605827	2L_10605827_SNP [dm3] 2L_10605827_SNP [dm6]	G	A	1.291e^-5	0.094	INTRON Trim9
2L	14689580	2L_14689580_SNP [dm3] 2L_14689580_SNP [dm6]	T	G	1.291e^-5	0.094	UPSTREAM osp INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	18776988	2R_18776988_SNP [dm3] 2R_22889465_SNP [dm6]	C	A	1.299e^-5	0.094	SYNONYMOUS_CODING MED23 UPSTREAM Gmer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
X	15407481	X_15407481_SNP [dm3] X_15513448_SNP [dm6]	T	C	1.317e^-5	0.094	SYNONYMOUS_CODING Ac13E	TF binding site mE1_TFBS_sens
3L	3709918	3L_3709918_SNP [dm3] 3L_3709918_SNP [dm6]	T	G	1.322e^-5	0.094	DOWNSTREAM CR45675 INTERGENIC
2L	5028832	2L_5028832_SNP [dm3] 2L_5028832_SNP [dm6]	T	C	1.329e^-5	0.094	UPSTREAM vkg & 1 other INTERGENIC	regulatory region REDfly_CRMs
X	13248912	X_13248912_SNP [dm3] X_13354879_SNP [dm6]	T	A	1.331e^-5	0.094	INTERGENIC
2R	12042114	2R_12042114_SNP [dm3] 2R_16154609_SNP [dm6]	T	A	1.335e^-5	0.094	INTRON lbk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_zfh1
2L	11573810	2L_11573810_SNP [dm3] 2L_11573810_SNP [dm6]	C	T	1.343e^-5	0.094	INTERGENIC
X	15406912	X_15406912_SNP [dm3] X_15512879_SNP [dm6]	T	G	1.345e^-5	0.094	NON_SYNONYMOUS_CODING Ac13E
2L	1384760	2L_1384760_SNP [dm3] 2L_1384760_SNP [dm6]	T	A	1.362e^-5	0.095	INTRON lea
2L	7478481	2L_7478481_SNP [dm3] 2L_7478481_SNP [dm6]	T	G	1.367e^-5	0.095	SYNONYMOUS_CODING Ziz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	12139407	2L_12139407_SNP [dm3] 2L_12139407_SNP [dm6]	A	T	1.370e^-5	0.095	INTRON Gr33a
2L	10393763	2L_10393763_SNP [dm3] 2L_10393763_SNP [dm6]	T	C	1.377e^-5	0.095	DOWNSTREAM Mdh1 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	11289495	2R_11289495_SNP [dm3] 2R_15401990_SNP [dm6]	C	A	1.380e^-5	0.095	UTR_5_PRIME CG43729
2L	12034185	2L_12034185_SNP [dm3] 2L_12034185_SNP [dm6]	T	A	1.393e^-5	0.095	UPSTREAM CG18788 DOWNSTREAM dmGlut INTERGENIC
2L	5045481	2L_5045481_SNP [dm3] 2L_5045481_SNP [dm6]	G	A	1.398e^-5	0.095	SPLICE_SITE_REGION CG44000 & 1 other UTR_5_PRIME CG44000 & 1 other UPSTREAM CG31650 INTRON CG44000 & 2 others	TF binding site mE1_TFBS_cad
2L	259182	2L_259182_SNP [dm3] 2L_259182_SNP [dm6]	C	A	1.401e^-5	0.095	DOWNSTREAM CG17075 INTRON CG3645
2L	11294166	2L_11294166_SNP [dm3] 2L_11294166_SNP [dm6]	C	G	1.402e^-5	0.095	INTERGENIC
2R	6536101	2R_6536101_SNP [dm3] 2R_10648596_SNP [dm6]	G	C	1.422e^-5	0.096	UTR_3_PRIME Elp2 UPSTREAM CG12934
3R	7340461	3R_7340461_SNP [dm3] 3R_11514739_SNP [dm6]	C	A	1.430e^-5	0.096	INTERGENIC
2L	12280088	2L_12280088_SNP [dm3] 2L_12280088_SNP [dm6]	A	T	1.442e^-5	0.097	INTRON aret
3R	3998140	3R_3998140_INS [dm3] 3R_8172418_INS [dm6]	A	AACCA	1.446e^-5	0.097	INTRON grn	TF binding site mE1_TFBS_HSA
2L	2723035	2L_2723035_SNP [dm3] 2L_2723035_SNP [dm6]	G	T	1.462e^-5	0.097	INTERGENIC	TF binding site mE1_TFBS_inv
2L	1876857	2L_1876857_SNP [dm3] 2L_1876857_SNP [dm6]	G	C	1.465e^-5	0.097	INTRON CG31663
2L	20908558	2L_20908558_SNP [dm3] 2L_20908558_SNP [dm6]	G	A	1.471e^-5	0.097	INTRON sky & 1 other
2L	11254719	2L_11254719_SNP [dm3] 2L_11254719_SNP [dm6]	G	A	1.495e^-5	0.098	INTRON ab
X	11680356	X_11680356_SNP [dm3] X_11786323_SNP [dm6]	C	T	1.509e^-5	0.098	INTERGENIC
2L	11827291	2L_11827291_SNP [dm3] 2L_11827291_SNP [dm6]	A	T	1.513e^-5	0.098	UTR_3_PRIME esc INTRON Pde1c
2L	5030971	2L_5030971_SNP [dm3] 2L_5030971_SNP [dm6]	C	A	1.519e^-5	0.098	SYNONYMOUS_CODING Cg25C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2L	5036300	2L_5036300_SNP [dm3] 2L_5036300_SNP [dm6]	C	A	1.519e^-5	0.098	INTRON Cg25C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5045224	2L_5045224_SNP [dm3] 2L_5045224_SNP [dm6]	T	G	1.519e^-5	0.098	UPSTREAM CG44000 & 2 others INTRON CG44000 & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12289705	2L_12289705_SNP [dm3] 2L_12289705_SNP [dm6]	C	T	1.524e^-5	0.098	INTRON aret	TF binding site BDTNP1_TFBS_twi
2L	11299163	2L_11299163_SNP [dm3] 2L_11299163_SNP [dm6]	G	A	1.532e^-5	0.098	INTERGENIC
2L	11331533	2L_11331533_SNP [dm3] 2L_11331533_SNP [dm6]	C	G	1.532e^-5	0.098	DOWNSTREAM CR44584 INTERGENIC
2L	1876966	2L_1876966_DEL [dm3] 2L_1876966_DEL [dm6]	AACTAT	A	1.554e^-5	0.099	INTRON CG31663
2R	19082563	2R_19082563_DEL [dm3] 2R_23195040_DEL [dm6]	AGATG	CA	1.556e^-5	0.099	INTRON CG34371	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11380720	2L_11380720_SNP [dm3] 2L_11380720_SNP [dm6]	G	A	1.563e^-5	0.099	INTERGENIC	regulatory region REDfly_CRMs
2R	12873220	2R_12873220_SNP [dm3] 2R_16985715_SNP [dm6]	T	A	1.564e^-5	0.099	INTRON Cbp53E
3R	4942235	3R_4942235_SNP [dm3] 3R_9116513_SNP [dm6]	C	A	1.572e^-5	0.099	INTRON pum
2L	14768634	2L_14768634_SNP [dm3] 2L_14768634_SNP [dm6]	A	T	1.580e^-5	0.099	INTERGENIC
X	16956465	X_16956465_SNP [dm3] X_17062432_SNP [dm6]	A	G	1.597e^-5	0.1	INTRON CG45002
3L	9464446	3L_9464446_SNP [dm3] 3L_9471346_SNP [dm6]	A	G	1.601e^-5	0.1	SYNONYMOUS_CODING CG44838 INTRON CG44838	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5044882	2L_5044882_SNP [dm3] 2L_5044882_SNP [dm6]	A	C	1.621e^-5	0.101	UPSTREAM CG31650 & 2 others INTRON CG44000 & 2 others	TF binding site BDTNP1_TFBS_twi
3R	4921063	3R_4921063_DEL [dm3] 3R_9095341_DEL [dm6]	GGGAGTAACTATGTAGTTTG...	G	1.625e^-5	0.101	INTRON pum
3L	3364155	3L_3364155_SNP [dm3] 3L_3364155_SNP [dm6]	C	T	1.627e^-5	0.101	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
2R	13764231	2R_13764231_SNP [dm3] 2R_17876726_SNP [dm6]	A	T	1.637e^-5	0.101	DOWNSTREAM CG30325 INTRON Elk
X	11203656	X_11203656_SNP [dm3] X_11309623_SNP [dm6]	A	G	1.649e^-5	0.101	INTRON Ir10a
2L	5036285	2L_5036285_SNP [dm3] 2L_5036285_SNP [dm6]	C	G	1.660e^-5	0.102	INTRON Cg25C	insulator Insulator_Class_I.mE01 TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4626118	3L_4626118_SNP [dm3] 3L_4626118_SNP [dm6]	A	T	1.691e^-5	0.103	UTR_5_PRIME Src64B UPSTREAM Rpd3 DOWNSTREAM CR45438	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	7491513	2L_7491513_DEL [dm3] 2L_7491513_DEL [dm6]	AA	A	1.691e^-5	0.103	INTRON Ziz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12381750	2L_12381750_SNP [dm3] 2L_12381750_SNP [dm6]	G	A	1.695e^-5	0.103	INTRON bru-2
3R	4085280	3R_4085280_SNP [dm3] 3R_8259558_SNP [dm6]	C	T	1.711e^-5	0.104	SYNONYMOUS_CODING mtg	TF binding site mE1_TFBS_cad
X	13457656	X_13457656_SNP [dm3] X_13563623_SNP [dm6]	G	T	1.730e^-5	0.104	UPSTREAM Tango13 DOWNSTREAM CG32633 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	21111766	2L_21111766_SNP [dm3] 2L_21111766_SNP [dm6]	C	A	1.741e^-5	0.105	INTRON Nhe2
2L	9338375	2L_9338375_SNP [dm3] 2L_9338375_SNP [dm6]	T	A	1.766e^-5	0.106	INTRON Eaat1
2L	14455655	2L_14455655_SNP [dm3] 2L_14455655_SNP [dm6]	G	A	1.773e^-5	0.106	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	11598482	2L_11598482_SNP [dm3] 2L_11598482_SNP [dm6]	C	A	1.779e^-5	0.106	INTRON kek2
2L	14690210	2L_14690210_SNP [dm3] 2L_14690210_SNP [dm6]	A	C	1.789e^-5	0.106	UPSTREAM osp INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	3328902	3R_3328902_DEL [dm3] 3R_7503180_DEL [dm6]	GAGAGCATCTG...	G	1.790e^-5	0.106	UPSTREAM CG1287 INTRON alpha-Est9
2L	14394924	2L_14394924_SNP [dm3] 2L_14394924_SNP [dm6]	C	G	1.805e^-5	0.106	INTRON elB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11213479	2L_11213479_SNP [dm3] 2L_11213479_SNP [dm6]	C	T	1.814e^-5	0.106	INTRON ab
X	13655360	X_13655360_INS [dm3] X_13761327_INS [dm6]	G	GG	1.817e^-5	0.106	UTR_3_PRIME Yp3 DOWNSTREAM Yp3	TF binding site BDTNP1_TFBS_dl
3R	1290734	3R_1290734_SNP [dm3] 3R_5465012_SNP [dm6]	T	C	1.894e^-5	0.111	UPSTREAM PEK DOWNSTREAM RpL35A INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3164494	3L_3164494_SNP [dm3] 3L_3164494_SNP [dm6]	G	T	1.910e^-5	0.111	NON_SYNONYMOUS_CODING Asciz UPSTREAM CG32280 DOWNSTREAM rasp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	10590316	2L_10590316_SNP [dm3] 2L_10590316_SNP [dm6]	T	A	1.913e^-5	0.111	INTRON Trim9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	4929943	3R_4929943_SNP [dm3] 3R_9104221_SNP [dm6]	A	G	1.920e^-5	0.111	INTRON pum
3R	10585123	3R_10585123_SNP [dm3] 3R_14759401_SNP [dm6]	G	A	1.934e^-5	0.111	INTRON jvl
2R	7875190	2R_7875190_SNP [dm3] 2R_11987685_SNP [dm6]	C	A	1.942e^-5	0.111	DOWNSTREAM CG34231 INTRON rho-7
2L	12046595	2L_12046595_SNP [dm3] 2L_12046595_SNP [dm6]	C	A	1.957e^-5	0.111	UPSTREAM CG6770 DOWNSTREAM Plzf EXON CR44589	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	14690245	2L_14690245_SNP [dm3] 2L_14690245_SNP [dm6]	T	C	1.967e^-5	0.111	UPSTREAM osp INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	10585141	3R_10585141_SNP [dm3] 3R_14759419_SNP [dm6]	A	G	1.968e^-5	0.111	INTRON jvl
2L	2892659	2L_2892659_SNP [dm3] 2L_2892659_SNP [dm6]	T	C	1.970e^-5	0.111	INTRON lilli	TF binding site BDTNP1_TFBS_twi
3R	4937580	3R_4937580_SNP [dm3] 3R_9111858_SNP [dm6]	C	T	1.970e^-5	0.111	INTRON pum
2L	14314156	2L_14314156_SNP [dm3] 2L_14314156_SNP [dm6]	T	C	1.975e^-5	0.111	INTRON wb	TF binding site mE1_TFBS_cad
3L	3330162	3L_3330162_SNP [dm3] 3L_3330162_SNP [dm6]	G	A	1.983e^-5	0.111	SYNONYMOUS_CODING CG14961 DOWNSTREAM CR45380	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3330513	3L_3330513_SNP [dm3] 3L_3330513_SNP [dm6]	C	T	1.983e^-5	0.111	SYNONYMOUS_CODING CG14961 DOWNSTREAM CR45380	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10884262	2R_10884262_SNP [dm3] 2R_14996757_SNP [dm6]	T	A	1.990e^-5	0.111	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9282473	2L_9282473_SNP [dm3] 2L_9282473_SNP [dm6]	T	G	1.993e^-5	0.111	INTRON Ggamma30A
3R	18558224	3R_18558224_SNP [dm3] 3R_22732502_SNP [dm6]	G	C	2.000e^-5	0.111	NON_SYNONYMOUS_CODING Takl2 DOWNSTREAM CG45049	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	11214193	2L_11214193_INS [dm3] 2L_11214193_INS [dm6]	C	CC	2.003e^-5	0.111	INTRON ab	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc
2L	9022858	2L_9022858_SNP [dm3] 2L_9022858_SNP [dm6]	A	G	2.014e^-5	0.111	INTERGENIC
3L	7995479	3L_7995479_SNP [dm3] 3L_8002379_SNP [dm6]	A	T	2.017e^-5	0.111	INTRON nmo
3L	9453509	3L_9453509_SNP [dm3] 3L_9460409_SNP [dm6]	G	C	2.022e^-5	0.111	SYNONYMOUS_CODING CG3434 UPSTREAM CG44838	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	7096016	2L_7096016_SNP [dm3] 2L_7096016_SNP [dm6]	C	T	2.026e^-5	0.111	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	11203664	X_11203664_SNP [dm3] X_11309631_SNP [dm6]	A	T	2.027e^-5	0.111	INTRON Ir10a
2L	4072718	2L_4072718_SNP [dm3] 2L_4072718_SNP [dm6]	A	G	2.039e^-5	0.111	INTRON ed
2L	11160905	2L_11160905_SNP [dm3] 2L_11160905_SNP [dm6]	G	A	2.041e^-5	0.111	INTRON Ca-beta
2L	3574005	2L_3574005_SNP [dm3] 2L_3574005_SNP [dm6]	C	T	2.045e^-5	0.111	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2R	6534148	2R_6534148_SNP [dm3] 2R_10646643_SNP [dm6]	G	C	2.061e^-5	0.111	SYNONYMOUS_CODING Elp2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2L	3472080	2L_3472080_SNP [dm3] 2L_3472080_SNP [dm6]	C	A	2.064e^-5	0.111	NON_SYNONYMOUS_CODING CG31776 UPSTREAM pgant4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_zfh1
2L	11239373	2L_11239373_SNP [dm3] 2L_11239373_SNP [dm6]	A	T	2.068e^-5	0.111	INTRON ab
2L	11390725	2L_11390725_SNP [dm3] 2L_11390725_SNP [dm6]	T	G	2.069e^-5	0.111	INTRON CR43681 EXON CR43681	regulatory region REDfly_CRMs
2L	9343618	2L_9343618_SNP [dm3] 2L_9343618_SNP [dm6]	C	T	2.092e^-5	0.112	SYNONYMOUS_CODING CG3748
2R	16737286	2R_16737286_SNP [dm3] 2R_20849781_SNP [dm6]	T	C	2.104e^-5	0.112	SYNONYMOUS_CODING CG17999 DOWNSTREAM CG9993	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14838032	2L_14838032_SNP [dm3] 2L_14838032_SNP [dm6]	G	A	2.138e^-5	0.114	INTERGENIC
X	7944412	X_7944412_SNP [dm3] X_8050379_SNP [dm6]	T	A	2.145e^-5	0.114	INTRON fs_1_h	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11087016	2L_11087016_SNP [dm3] 2L_11087016_SNP [dm6]	C	A	2.176e^-5	0.115	UTR_5_PRIME CG16854	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	1107309	3L_1107309_SNP [dm3] 3L_1107309_SNP [dm6]	T	C	2.184e^-5	0.115	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	11361462	2L_11361462_SNP [dm3] 2L_11361462_SNP [dm6]	A	C	2.216e^-5	0.116	INTRON salr	regulatory region REDfly_CRMs
2L	11148164	2L_11148164_SNP [dm3] 2L_11148164_SNP [dm6]	C	T	2.217e^-5	0.116	INTRON Gyc32E
3R	8138771	3R_8138771_SNP [dm3] 3R_12313049_SNP [dm6]	G	A	2.243e^-5	0.117	NON_SYNONYMOUS_CODING CG4066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	14690344	2L_14690344_SNP [dm3] 2L_14690344_SNP [dm6]	T	C	2.251e^-5	0.117	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	8660626	3L_8660626_SNP [dm3] 3L_8667526_SNP [dm6]	G	T	2.257e^-5	0.117	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_Kr
3R	12537809	3R_12537809_DEL [dm3] 3R_16712087_DEL [dm6]	CTCTGTTGGCGTC...	C	2.265e^-5	0.117	INTRON Ubx
2R	1385599	2R_1385599_SNP [dm3] 2R_5498094_SNP [dm6]	A	T	2.284e^-5	0.118	INTRON CG30438	transposable element FlyBase
2L	12103296	2L_12103296_SNP [dm3] 2L_12103296_SNP [dm6]	C	A	2.309e^-5	0.119	UPSTREAM Aats-thr & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_Ubx
2L	11199260	2L_11199260_SNP [dm3] 2L_11199260_SNP [dm6]	C	A	2.320e^-5	0.119	INTRON Ca-beta
X	16954480	X_16954480_SNP [dm3] X_17060447_SNP [dm6]	C	G	2.344e^-5	0.12	INTRON CG45002
3L	5903061	3L_5903061_SNP [dm3] 3L_5909961_SNP [dm6]	A	T	2.346e^-5	0.12	DOWNSTREAM CG13288 INTRON CG13288
2L	11362353	2L_11362353_SNP [dm3] 2L_11362353_SNP [dm6]	G	A	2.355e^-5	0.12	INTRON salr	regulatory region REDfly_CRMs
2L	9242950	2L_9242950_SNP [dm3] 2L_9242950_SNP [dm6]	A	T	2.363e^-5	0.12	NON_SYNONYMOUS_CODING tai INTRON tai	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6103443	2L_6103443_SNP [dm3] 2L_6103443_SNP [dm6]	A	G	2.367e^-5	0.12	INTRON stai
2L	10393778	2L_10393778_SNP [dm3] 2L_10393778_SNP [dm6]	G	A	2.379e^-5	0.12	UTR_3_PRIME Mdh1 DOWNSTREAM da & 1 other	TF binding site mE1_TFBS_cad
2L	11353940	2L_11353940_SNP [dm3] 2L_11353940_SNP [dm6]	G	T	2.382e^-5	0.12	UPSTREAM CR44586 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12305776	2L_12305776_SNP [dm3] 2L_12305776_SNP [dm6]	C	A	2.384e^-5	0.12	INTRON aret
3R	4759230	3R_4759230_SNP [dm3] 3R_8933508_SNP [dm6]	C	T	2.428e^-5	0.12	DOWNSTREAM CR44020 INTERGENIC
X	16953289	X_16953289_SNP [dm3] X_17059256_SNP [dm6]	C	T	2.435e^-5	0.12	INTRON CG45002
X	16953867	X_16953867_SNP [dm3] X_17059834_SNP [dm6]	C	T	2.435e^-5	0.12	INTRON CG45002
X	16953871	X_16953871_SNP [dm3] X_17059838_SNP [dm6]	C	T	2.435e^-5	0.12	INTRON CG45002
X	16954175	X_16954175_SNP [dm3] X_17060142_SNP [dm6]	T	C	2.435e^-5	0.12	INTRON CG45002
X	16954265	X_16954265_SNP [dm3] X_17060232_SNP [dm6]	T	A	2.435e^-5	0.12	INTRON CG45002
2L	2737628	2L_2737628_SNP [dm3] 2L_2737628_SNP [dm6]	A	T	2.453e^-5	0.121	DOWNSTREAM mir-4914 INTRON CG31689 EXON mir-4914
3L	3873133	3L_3873133_SNP [dm3] 3L_3873133_SNP [dm6]	T	A	2.460e^-5	0.121	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	12293579	2L_12293579_SNP [dm3] 2L_12293579_SNP [dm6]	A	T	2.466e^-5	0.121	INTRON aret	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12315622	2L_12315622_SNP [dm3] 2L_12315622_SNP [dm6]	A	T	2.466e^-5	0.121	DOWNSTREAM CR45282 & 1 other INTERGENIC
3R	4919940	3R_4919940_SNP [dm3] 3R_9094218_SNP [dm6]	C	A	2.485e^-5	0.121	INTRON pum
2L	14724266	2L_14724266_INS [dm3] 2L_14724266_INS [dm6]	T	TGT	2.521e^-5	0.123	DOWNSTREAM CG42685 INTERGENIC
X	12242446	X_12242446_SNP [dm3] X_12348413_SNP [dm6]	C	A	2.527e^-5	0.123	INTERGENIC
3R	18974933	3R_18974933_SNP [dm3] 3R_23149211_SNP [dm6]	A	T	2.535e^-5	0.123	DOWNSTREAM unk INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12046241	2L_12046241_SNP [dm3] 2L_12046241_SNP [dm6]	C	T	2.549e^-5	0.123	UPSTREAM CR44589 & 1 other DOWNSTREAM Plzf INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	11362307	2L_11362307_SNP [dm3] 2L_11362307_SNP [dm6]	T	A	2.554e^-5	0.123	INTRON salr	regulatory region REDfly_CRMs
2L	11866420	2L_11866420_SNP [dm3] 2L_11866420_SNP [dm6]	G	A	2.564e^-5	0.123	INTRON Pde1c
X	12361656	X_12361656_SNP [dm3] X_12467623_SNP [dm6]	A	G	2.589e^-5	0.124	INTRON CG42258	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18974919	3R_18974919_SNP [dm3] 3R_23149197_SNP [dm6]	A	T	2.593e^-5	0.124	DOWNSTREAM unk INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7473590	2L_7473590_SNP [dm3] 2L_7473590_SNP [dm6]	T	A	2.614e^-5	0.124	UTR_3_PRIME Ziz INTRON Ziz	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	9281421	3L_9281421_DEL [dm3] 3L_9288321_DEL [dm6]	AA	A	2.617e^-5	0.124	UTR_3_PRIME GluRIB
2L	12406319	2L_12406319_SNP [dm3] 2L_12406319_SNP [dm6]	A	G	2.628e^-5	0.124	DOWNSTREAM vir-1 INTRON vir-1
2L	12406334	2L_12406334_SNP [dm3] 2L_12406334_SNP [dm6]	C	T	2.628e^-5	0.124	DOWNSTREAM vir-1 INTRON vir-1
3R	4010802	3R_4010802_SNP [dm3] 3R_8185080_SNP [dm6]	C	A	2.629e^-5	0.124	INTERGENIC
2L	12047072	2L_12047072_SNP [dm3] 2L_12047072_SNP [dm6]	A	G	2.635e^-5	0.124	UTR_3_PRIME Plzf UPSTREAM CG6770 DOWNSTREAM CR44589
2L	11837139	2L_11837139_SNP [dm3] 2L_11837139_SNP [dm6]	T	G	2.689e^-5	0.125	UPSTREAM Sfp33A4 & 2 others INTRON Pde1c
3L	8345245	3L_8345245_SNP [dm3] 3L_8352145_SNP [dm6]	A	T	2.693e^-5	0.125	UTR_3_PRIME GAPcenA DOWNSTREAM CG17352 & 1 other
2L	11837129	2L_11837129_SNP [dm3] 2L_11837129_SNP [dm6]	C	T	2.694e^-5	0.125	UPSTREAM Sfp33A4 & 2 others INTRON Pde1c
2L	11837130	2L_11837130_SNP [dm3] 2L_11837130_SNP [dm6]	C	T	2.694e^-5	0.125	UPSTREAM Sfp33A4 & 2 others INTRON Pde1c
2L	11905133	2L_11905133_SNP [dm3] 2L_11905133_SNP [dm6]	G	A	2.695e^-5	0.125	INTRON Pde1c
2L	7481224	2L_7481224_SNP [dm3] 2L_7481224_SNP [dm6]	G	A	2.699e^-5	0.125	SYNONYMOUS_CODING Ziz
3R	4914645	3R_4914645_SNP [dm3] 3R_9088923_SNP [dm6]	C	G	2.716e^-5	0.126	INTRON pum
2L	12045192	2L_12045192_SNP [dm3] 2L_12045192_SNP [dm6]	C	T	2.724e^-5	0.126	UTR_5_PRIME CG6785 UPSTREAM CG6785 DOWNSTREAM CG6770	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2L	17117466	2L_17117466_SNP [dm3] 2L_17117466_SNP [dm6]	G	A	2.743e^-5	0.126	INTERGENIC
2L	5426943	2L_5426943_SNP [dm3] 2L_5426943_SNP [dm6]	T	G	2.747e^-5	0.126	INTERGENIC
2L	11185251	2L_11185251_SNP [dm3] 2L_11185251_SNP [dm6]	C	T	2.758e^-5	0.126	INTRON Ca-beta	TF binding site BDTNP1_TFBS_prd mE1_TFBS_sens
2R	13268941	2R_13268941_SNP [dm3] 2R_17381436_SNP [dm6]	A	G	2.775e^-5	0.127	INTERGENIC
2R	7120892	2R_7120892_SNP [dm3] 2R_11233387_SNP [dm6]	G	A	2.809e^-5	0.128	SYNONYMOUS_CODING CG13218 UPSTREAM metro & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
X	8962246	X_8962246_SNP [dm3] X_9068213_SNP [dm6]	C	T	2.814e^-5	0.128	UPSTREAM CG15365 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	7391546	2R_7391546_SNP [dm3] 2R_11504041_SNP [dm6]	A	G	2.823e^-5	0.128	INTRON inv
X	19324112	X_19324112_SNP [dm3] X_19430079_SNP [dm6]	G	A	2.831e^-5	0.128	INTRON kek5
X	16956463	X_16956463_SNP [dm3] X_17062430_SNP [dm6]	C	T	2.841e^-5	0.128	INTRON CG45002
2L	11484921	2L_11484921_SNP [dm3] 2L_11484921_SNP [dm6]	T	A	2.856e^-5	0.129	UTR_5_PRIME sala & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	4656667	2L_4656667_SNP [dm3] 2L_4656667_SNP [dm6]	C	T	2.862e^-5	0.129	INTERGENIC
2L	7481411	2L_7481411_SNP [dm3] 2L_7481411_SNP [dm6]	G	A	2.893e^-5	0.13	SYNONYMOUS_CODING Ziz
3R	4948335	3R_4948335_SNP [dm3] 3R_9122613_SNP [dm6]	G	A	2.910e^-5	0.13	INTRON pum
2R	19151237	2R_19151237_SNP [dm3] 2R_23263714_SNP [dm6]	G	A	2.938e^-5	0.131	DOWNSTREAM CG12782 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18940272	2L_18940272_SNP [dm3] 2L_18940272_SNP [dm6]	G	A	2.979e^-5	0.132	SYNONYMOUS_CODING ssp3	TF binding site mE1_TFBS_cad
3R	4164389	3R_4164389_SNP [dm3] 3R_8338667_SNP [dm6]	A	G	2.983e^-5	0.132	INTERGENIC
2L	12315901	2L_12315901_SNP [dm3] 2L_12315901_SNP [dm6]	A	T	2.986e^-5	0.132	DOWNSTREAM CR45283 EXON CR45282
2L	9636135	2L_9636135_SNP [dm3] 2L_9636135_SNP [dm6]	T	A	2.993e^-5	0.132	INTRON Apoltp
2L	3212229	2L_3212229_SNP [dm3] 2L_3212229_SNP [dm6]	T	A	2.999e^-5	0.132	INTERGENIC
2L	14690610	2L_14690610_SNP [dm3] 2L_14690610_SNP [dm6]	T	C	3.005e^-5	0.132	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	12973504	2L_12973504_SNP [dm3] 2L_12973504_SNP [dm6]	C	T	3.014e^-5	0.132	UPSTREAM Vha68-2 INTERGENIC
2L	3181327	2L_3181327_SNP [dm3] 2L_3181327_SNP [dm6]	T	C	3.014e^-5	0.132	INTRON CG34393
3L	18905943	3L_18905943_SNP [dm3] 3L_18912843_SNP [dm6]	G	A	3.024e^-5	0.132	DOWNSTREAM CG14077 INTRON CG14077
X	8495772	X_8495772_SNP [dm3] X_8601739_SNP [dm6]	G	T	3.051e^-5	0.133	UTR_3_PRIME Crag DOWNSTREAM Caf1-180 & 1 other
2L	19374876	2L_19374876_SNP [dm3] 2L_19374876_SNP [dm6]	G	A	3.068e^-5	0.133	INTERGENIC
2L	9540652	2L_9540652_SNP [dm3] 2L_9540652_SNP [dm6]	A	G	3.087e^-5	0.133	SYNONYMOUS_CODING CG17855 DOWNSTREAM Oatp30B	TF binding site mE1_TFBS_bab1
3R	4915876	3R_4915876_SNP [dm3] 3R_9090154_SNP [dm6]	T	G	3.090e^-5	0.133	INTRON pum
2L	11484918	2L_11484918_SNP [dm3] 2L_11484918_SNP [dm6]	T	A	3.108e^-5	0.133	UTR_5_PRIME sala & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	6250884	2L_6250884_SNP [dm3] 2L_6250884_SNP [dm6]	C	T	3.127e^-5	0.133	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
X	20946283	X_20946283_SNP [dm3] X_21075256_SNP [dm6]	T	C	3.128e^-5	0.133	INTRON bves
2L	10641539	2L_10641539_SNP [dm3] 2L_10641539_SNP [dm6]	A	C	3.131e^-5	0.133	NON_SYNONYMOUS_CODING CG31872	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10641563	2L_10641563_SNP [dm3] 2L_10641563_SNP [dm6]	C	A	3.131e^-5	0.133	NON_SYNONYMOUS_CODING CG31872	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19190877	3L_19190877_SNP [dm3] 3L_19197777_SNP [dm6]	A	T	3.133e^-5	0.133	INTRON fz2
X	4206490	X_4206490_SNP [dm3] X_4312457_SNP [dm6]	T	G	3.136e^-5	0.133	UPSTREAM CG15579 INTRON CR44957
2L	9883482	2L_9883482_SNP [dm3] 2L_9883482_SNP [dm6]	G	T	3.139e^-5	0.133	INTRON nAChRalpha6
2L	16050365	2L_16050365_SNP [dm3] 2L_16050365_SNP [dm6]	C	T	3.167e^-5	0.134	UTR_5_PRIME beat-Ia	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	4930421	3R_4930421_SNP [dm3] 3R_9104699_SNP [dm6]	T	A	3.177e^-5	0.134	INTRON pum
X	16954470	X_16954470_SNP [dm3] X_17060437_SNP [dm6]	C	G	3.186e^-5	0.135	INTRON CG45002
2L	5995759	2L_5995759_SNP [dm3] 2L_5995759_SNP [dm6]	G	A	3.236e^-5	0.135	SYNONYMOUS_CODING lid	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12355500	2L_12355500_DEL [dm3] 2L_12355500_DEL [dm6]	TT	T	3.246e^-5	0.135	UPSTREAM CG17010 INTRON bru-2
X	19325964	X_19325964_SNP [dm3] X_19431931_SNP [dm6]	C	T	3.246e^-5	0.135	INTRON kek5	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	3511876	3R_3511876_SNP [dm3] 3R_7686154_SNP [dm6]	C	G	3.260e^-5	0.135	INTRON Nlg1
2L	11947012	2L_11947012_SNP [dm3] 2L_11947012_SNP [dm6]	C	T	3.270e^-5	0.135	UTR_3_PRIME Cry UPSTREAM CG16964 DOWNSTREAM Cry
2L	11947013	2L_11947013_SNP [dm3] 2L_11947013_SNP [dm6]	T	C	3.270e^-5	0.135	UTR_3_PRIME Cry UPSTREAM CG16964 DOWNSTREAM Cry
3L	8660585	3L_8660585_SNP [dm3] 3L_8667485_SNP [dm6]	A	G	3.278e^-5	0.135	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Kr
3L	7751652	3L_7751652_SNP [dm3] 3L_7758552_SNP [dm6]	A	C	3.283e^-5	0.135	NON_SYNONYMOUS_CODING CG32373	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18449699	3R_18449699_SNP [dm3] 3R_22623977_SNP [dm6]	T	C	3.285e^-5	0.135	INTRON loco	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2R	11620649	2R_11620649_SNP [dm3] 2R_15733144_SNP [dm6]	C	T	3.289e^-5	0.135	INTRON CG30089	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	12977911	X_12977911_DEL [dm3] X_13083878_DEL [dm6]	GGGACG	G	3.294e^-5	0.135	INTRON hep
2L	14246302	2L_14246302_SNP [dm3] 2L_14246302_SNP [dm6]	A	T	3.295e^-5	0.135	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	11827361	2L_11827361_SNP [dm3] 2L_11827361_SNP [dm6]	T	A	3.302e^-5	0.135	UTR_3_PRIME esc INTRON Pde1c	TF binding site mE1_TFBS_cad
3R	26516895	3R_26516895_SNP [dm3] 3R_30691173_SNP [dm6]	A	T	3.307e^-5	0.135	NON_SYNONYMOUS_CODING Spn100A	TF binding site mE1_TFBS_cad
2L	4110243	2L_4110243_SNP [dm3] 2L_4110243_SNP [dm6]	T	C	3.330e^-5	0.136	INTRON ed
2L	10888014	2L_10888014_SNP [dm3] 2L_10888014_SNP [dm6]	G	C	3.343e^-5	0.136	UTR_3_PRIME CG14071 DOWNSTREAM CR44490 & 1 other
3R	3546695	3R_3546695_SNP [dm3] 3R_7720973_SNP [dm6]	C	T	3.356e^-5	0.137	EXON CR44260
2L	14714207	2L_14714207_SNP [dm3] 2L_14714207_SNP [dm6]	C	T	3.371e^-5	0.137	SYNONYMOUS_CODING CG34165 DOWNSTREAM CG15282
2L	12230771	2L_12230771_SNP [dm3] 2L_12230771_SNP [dm6]	A	T	3.388e^-5	0.137	INTRON aret
3L	5869928	3L_5869928_SNP [dm3] 3L_5876828_SNP [dm6]	G	T	3.394e^-5	0.137	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9461633	3L_9461633_SNP [dm3] 3L_9468533_SNP [dm6]	T	G	3.410e^-5	0.138	INTRON CG44838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5583662	X_5583662_SNP [dm3] X_5689629_SNP [dm6]	C	A	3.418e^-5	0.138	UPSTREAM cv & 1 other DOWNSTREAM CR45525 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
X	20946334	X_20946334_SNP [dm3] X_21075307_SNP [dm6]	C	A	3.425e^-5	0.138	INTRON bves
2R	18365697	2R_18365697_INS [dm3] 2R_22478192_INS [dm6]	T	TCTT	3.452e^-5	0.138	UPSTREAM CG45063 & 1 other INTERGENIC
2L	1256794	2L_1256794_SNP [dm3] 2L_1256794_SNP [dm6]	T	C	3.456e^-5	0.138	UTR_5_PRIME robo3
2L	12158601	2L_12158601_SNP [dm3] 2L_12158601_SNP [dm6]	A	C	3.468e^-5	0.138	INTRON CG31760	TF binding site mE1_TFBS_inv
2L	12804690	2L_12804690_SNP [dm3] 2L_12804690_SNP [dm6]	T	A	3.484e^-5	0.138	INTERGENIC
2L	14539936	2L_14539936_SNP [dm3] 2L_14539936_SNP [dm6]	A	C	3.491e^-5	0.138	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	967558	3R_967558_SNP [dm3] 3R_5141836_SNP [dm6]	G	A	3.511e^-5	0.138	INTERGENIC	TF binding site mE1_TFBS_cad
2L	12147831	2L_12147831_SNP [dm3] 2L_12147831_SNP [dm6]	T	A	3.513e^-5	0.138	INTRON CG31760
2L	9663426	2L_9663426_DEL [dm3] 2L_9663426_DEL [dm6]	TT	T	3.521e^-5	0.138	INTERGENIC
2L	4656918	2L_4656918_SNP [dm3] 2L_4656918_SNP [dm6]	A	G	3.528e^-5	0.138	INTERGENIC
2L	3181351	2L_3181351_SNP [dm3] 2L_3181351_SNP [dm6]	G	C	3.531e^-5	0.138	INTRON CG34393
2R	15260113	2R_15260113_SNP [dm3] 2R_19372608_SNP [dm6]	A	C	3.533e^-5	0.138	INTRON CG9416	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2L	1399015	2L_1399015_SNP [dm3] 2L_1399015_SNP [dm6]	A	T	3.535e^-5	0.138	INTRON lea	TF binding site BDTNP1_TFBS_dl
2L	13979537	2L_13979537_INS [dm3] 2L_13979537_INS [dm6]	T	TCGTGTATACTTG...	3.557e^-5	0.139	UTR_3_PRIME Cyp28a5 UPSTREAM NimC2
X	16954431	X_16954431_SNP [dm3] X_17060398_SNP [dm6]	T	A	3.581e^-5	0.14	INTRON CG45002
2L	14690732	2L_14690732_SNP [dm3] 2L_14690732_SNP [dm6]	A	T	3.594e^-5	0.14	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	12314268	2L_12314268_SNP [dm3] 2L_12314268_SNP [dm6]	G	C	3.623e^-5	0.141	DOWNSTREAM aret INTERGENIC
3L	8660584	3L_8660584_SNP [dm3] 3L_8667484_SNP [dm6]	A	T	3.639e^-5	0.141	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Kr
X	16954417	X_16954417_SNP [dm3] X_17060384_SNP [dm6]	C	A	3.698e^-5	0.143	INTRON CG45002
2R	14903639	2R_14903639_SNP [dm3] 2R_19016134_SNP [dm6]	G	T	3.732e^-5	0.144	INTERGENIC
3R	4715789	3R_4715789_SNP [dm3] 3R_8890067_SNP [dm6]	A	G	3.760e^-5	0.145	INTRON pyd
2L	5428881	2L_5428881_SNP [dm3] 2L_5428881_SNP [dm6]	A	G	3.812e^-5	0.146	INTERGENIC
2R	1624577	2R_1624577_SNP [dm3] 2R_5737072_SNP [dm6]	C	G	3.816e^-5	0.146	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	5028636	2L_5028636_SNP [dm3] 2L_5028636_SNP [dm6]	T	A	3.827e^-5	0.146	UPSTREAM vkg & 1 other INTERGENIC	regulatory region REDfly_CRMs
X	19283246	X_19283246_SNP [dm3] X_19389213_SNP [dm6]	C	T	3.832e^-5	0.146	INTRON kek5
3R	11123604	3R_11123604_SNP [dm3] 3R_15297882_SNP [dm6]	A	G	3.849e^-5	0.147	DOWNSTREAM Tm1 INTRON Tm1
X	11680352	X_11680352_SNP [dm3] X_11786319_SNP [dm6]	A	T	3.857e^-5	0.147	INTERGENIC
2R	6531390	2R_6531390_SNP [dm3] 2R_10643885_SNP [dm6]	C	T	3.880e^-5	0.147	SYNONYMOUS_CODING Git	TF binding site mE1_TFBS_HSA
X	19546769	X_19546769_SNP [dm3] X_19652736_SNP [dm6]	T	C	3.881e^-5	0.147	SYNONYMOUS_CODING CG14215 UPSTREAM Ranbp21	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12306548	2L_12306548_SNP [dm3] 2L_12306548_SNP [dm6]	C	G	3.911e^-5	0.147	INTRON aret
2R	783998	2R_783998_SNP [dm3] 2R_4896493_SNP [dm6]	C	T	3.913e^-5	0.147	INTRON CG44102	transposable element FlyBase
2L	1397450	2L_1397450_SNP [dm3] 2L_1397450_SNP [dm6]	G	C	3.925e^-5	0.147	INTRON lea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	19693063	2L_19693063_SNP [dm3] 2L_19693063_SNP [dm6]	A	T	3.927e^-5	0.147	INTRON Lar	TF binding site BDTNP1_TFBS_dl
2R	13763092	2R_13763092_SNP [dm3] 2R_17875587_SNP [dm6]	T	A	3.929e^-5	0.147	INTRON Elk
3L	4434621	3L_4434621_SNP [dm3] 3L_4434621_SNP [dm6]	G	T	3.937e^-5	0.147	SYNONYMOUS_CODING nAChRbeta1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10956156	2R_10956156_SNP [dm3] 2R_15068651_SNP [dm6]	C	A	3.962e^-5	0.147	INTERGENIC
2L	9777381	2L_9777381_SNP [dm3] 2L_9777381_SNP [dm6]	G	A	3.968e^-5	0.147	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	3490345	3R_3490345_SNP [dm3] 3R_7664623_SNP [dm6]	C	G	3.982e^-5	0.147	INTRON Nlg1
3R	3502153	3R_3502153_SNP [dm3] 3R_7676431_SNP [dm6]	T	A	3.982e^-5	0.147	INTRON Nlg1
2L	14690200	2L_14690200_SNP [dm3] 2L_14690200_SNP [dm6]	T	C	3.988e^-5	0.147	UPSTREAM osp INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	14690384	2L_14690384_SNP [dm3] 2L_14690384_SNP [dm6]	C	A	3.988e^-5	0.147	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	5945544	3L_5945544_SNP [dm3] 3L_5952444_SNP [dm6]	A	C	3.992e^-5	0.147	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19455644	2R_19455644_SNP [dm3] 2R_23568121_SNP [dm6]	A	T	4.004e^-5	0.147	UTR_5_PRIME apt INTRON apt
X	8725102	X_8725102_SNP [dm3] X_8831069_SNP [dm6]	G	C	4.008e^-5	0.147	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15902451	2R_15902451_SNP [dm3] 2R_20014946_SNP [dm6]	C	T	4.008e^-5	0.147	DOWNSTREAM CR44629 INTERGENIC
X	21060784	X_21060784_SNP [dm3] X_21189757_SNP [dm6]	A	C	4.015e^-5	0.147	DOWNSTREAM CR45506 INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	11881876	2L_11881876_SNP [dm3] 2L_11881876_SNP [dm6]	T	C	4.018e^-5	0.147	INTRON Pde1c
2L	12314200	2L_12314200_SNP [dm3] 2L_12314200_SNP [dm6]	C	T	4.046e^-5	0.148	DOWNSTREAM aret INTERGENIC
2L	12406586	2L_12406586_SNP [dm3] 2L_12406586_SNP [dm6]	G	T	4.059e^-5	0.148	DOWNSTREAM vir-1 INTRON vir-1
2L	14281104	2L_14281104_SNP [dm3] 2L_14281104_SNP [dm6]	G	A	4.067e^-5	0.148	INTRON wb	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	1099442	2L_1099442_SNP [dm3] 2L_1099442_SNP [dm6]	A	C	4.071e^-5	0.148	INTRON CG4629
2L	10666817	2L_10666817_SNP [dm3] 2L_10666817_SNP [dm6]	T	G	4.077e^-5	0.148	INTRON CG31871
2L	14281118	2L_14281118_SNP [dm3] 2L_14281118_SNP [dm6]	G	A	4.102e^-5	0.148	INTRON wb	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
2L	14690155	2L_14690155_DEL [dm3] 2L_14690155_DEL [dm6]	AA	A	4.106e^-5	0.148	UPSTREAM osp INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2R	19889209	2R_19889209_SNP [dm3] 2R_24001686_SNP [dm6]	C	G	4.116e^-5	0.148	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13946844	2L_13946844_SNP [dm3] 2L_13946844_SNP [dm6]	A	T	4.121e^-5	0.148	INTRON Ance-3 & 1 other
2L	7096097	2L_7096097_SNP [dm3] 2L_7096097_SNP [dm6]	T	A	4.137e^-5	0.148	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5599866	2L_5599866_SNP [dm3] 2L_5599866_SNP [dm6]	C	T	4.163e^-5	0.148	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7487843	2L_7487843_SNP [dm3] 2L_7487843_SNP [dm6]	C	G	4.169e^-5	0.148	INTRON Ziz
2R	20145398	2R_20145398_DEL [dm3] 2R_24257875_DEL [dm6]	GTTG	G	4.180e^-5	0.148	UPSTREAM CG3376 DOWNSTREAM CG13575 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	14702106	2L_14702106_INS [dm3] 2L_14702106_INS [dm6]	T	CAAGAGATTGGTA...	4.187e^-5	0.148	INTERGENIC
3R	4750432	3R_4750432_INS [dm3] 3R_8924710_INS [dm6]	A	ATGTA	4.190e^-5	0.148	INTRON pyd
2R	11800260	2R_11800260_SNP [dm3] 2R_15912755_SNP [dm6]	T	C	4.195e^-5	0.148	INTRON sli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
3R	17179463	3R_17179463_SNP [dm3] 3R_21353741_SNP [dm6]	G	A	4.200e^-5	0.148	DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_
2R	13004827	2R_13004827_SNP [dm3] 2R_17117322_SNP [dm6]	T	C	4.200e^-5	0.148	INTERGENIC
2L	10621525	2L_10621525_SNP [dm3] 2L_10621525_SNP [dm6]	T	C	4.213e^-5	0.148	INTRON Trim9
3R	3402132	3R_3402132_SNP [dm3] 3R_7576410_SNP [dm6]	C	T	4.217e^-5	0.148	INTRON CG34127	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	1385249	2R_1385249_SNP [dm3] 2R_5497744_SNP [dm6]	A	T	4.220e^-5	0.148	INTRON CG30438
3R	3331155	3R_3331155_SNP [dm3] 3R_7505433_SNP [dm6]	C	T	4.238e^-5	0.148	UPSTREAM alpha-Est9 INTERGENIC
X	20946274	X_20946274_SNP [dm3] X_21075247_SNP [dm6]	T	G	4.259e^-5	0.148	INTRON bves
2L	4479977	2L_4479977_SNP [dm3] 2L_4479977_SNP [dm6]	A	G	4.270e^-5	0.148	SYNONYMOUS_CODING dp
2R	3929819	2R_3929819_SNP [dm3] 2R_8042314_SNP [dm6]	T	C	4.288e^-5	0.148	UTR_3_PRIME Optix
2L	16520352	2L_16520352_DEL [dm3] 2L_16520352_DEL [dm6]	TAAGCAAAGTC...	T	4.296e^-5	0.148	UPSTREAM CG5953 INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
2L	10209192	2L_10209192_SNP [dm3] 2L_10209192_SNP [dm6]	G	C	4.301e^-5	0.148	DOWNSTREAM CG5727 INTRON CG5731 EXON CR44845	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	10646881	2L_10646881_SNP [dm3] 2L_10646881_SNP [dm6]	C	A	4.303e^-5	0.148	NON_SYNONYMOUS_CODING CG17097 DOWNSTREAM CG18284	TF binding site mE1_TFBS_inv mE1_TFBS_run
2L	1394408	2L_1394408_SNP [dm3] 2L_1394408_SNP [dm6]	A	G	4.304e^-5	0.148	INTRON lea
2L	1508473	2L_1508473_SNP [dm3] 2L_1508473_SNP [dm6]	C	A	4.305e^-5	0.148	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11399631	2L_11399631_SNP [dm3] 2L_11399631_SNP [dm6]	C	A	4.308e^-5	0.148	INTERGENIC	regulatory region REDfly_CRMs
2L	10208304	2L_10208304_SNP [dm3] 2L_10208304_SNP [dm6]	G	A	4.310e^-5	0.148	SYNONYMOUS_CODING CG5731 UPSTREAM CR44845	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	10208602	2L_10208602_SNP [dm3] 2L_10208602_SNP [dm6]	G	A	4.310e^-5	0.148	UPSTREAM CR44845 INTRON CG5731	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	5482419	3L_5482419_SNP [dm3] 3L_5489319_SNP [dm6]	T	G	4.375e^-5	0.15	INTERGENIC
2L	10209194	2L_10209194_SNP [dm3] 2L_10209194_SNP [dm6]	T	C	4.400e^-5	0.15	DOWNSTREAM CG5727 INTRON CG5731 EXON CR44845	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	14732752	2L_14732752_SNP [dm3] 2L_14732752_SNP [dm6]	C	T	4.417e^-5	0.15	EXON CR44857
2L	4078420	2L_4078420_SNP [dm3] 2L_4078420_SNP [dm6]	C	A	4.417e^-5	0.15	INTRON ed
2L	10643666	2L_10643666_SNP [dm3] 2L_10643666_SNP [dm6]	C	A	4.419e^-5	0.15	UPSTREAM CG18284 DOWNSTREAM CG31872 INTERGENIC
3R	1720270	3R_1720270_SNP [dm3] 3R_5894548_SNP [dm6]	A	C	4.433e^-5	0.151	INTRON CG34113
X	19546453	X_19546453_SNP [dm3] X_19652420_SNP [dm6]	T	A	4.448e^-5	0.151	UTR_5_PRIME CG14215 UPSTREAM CG14215 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	6359972	3L_6359972_SNP [dm3] 3L_6366872_SNP [dm6]	A	T	4.483e^-5	0.152	INTERGENIC
2L	14714391	2L_14714391_SNP [dm3] 2L_14714391_SNP [dm6]	A	T	4.493e^-5	0.152	UTR_3_PRIME CG34165 DOWNSTREAM CG34165
3R	15696878	3R_15696878_SNP [dm3] 3R_19871156_SNP [dm6]	T	C	4.513e^-5	0.152	INTRON CG4562	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	10884220	2R_10884220_SNP [dm3] 2R_14996715_SNP [dm6]	T	A	4.519e^-5	0.152	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	4019364	3R_4019364_SNP [dm3] 3R_8193642_SNP [dm6]	C	A	4.530e^-5	0.152	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17088179	2R_17088179_SNP [dm3] 2R_21200674_SNP [dm6]	G	A	4.533e^-5	0.152	INTRON Glycogenin & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	14714307	2L_14714307_SNP [dm3] 2L_14714307_SNP [dm6]	G	A	4.579e^-5	0.153	UTR_3_PRIME CG34165
X	11680347	X_11680347_SNP [dm3] X_11786314_SNP [dm6]	T	C	4.596e^-5	0.154	INTERGENIC
2L	1876982	2L_1876982_DEL [dm3] 2L_1876982_DEL [dm6]	TG	T	4.605e^-5	0.154	INTRON CG31663
3R	9149703	3R_9149703_SNP [dm3] 3R_13323981_SNP [dm6]	A	G	4.612e^-5	0.154	INTERGENIC
3R	4919893	3R_4919893_SNP [dm3] 3R_9094171_SNP [dm6]	A	G	4.622e^-5	0.154	INTRON pum
2L	11356935	2L_11356935_SNP [dm3] 2L_11356935_SNP [dm6]	G	T	4.641e^-5	0.154	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	11369876	2L_11369876_SNP [dm3] 2L_11369876_SNP [dm6]	A	T	4.641e^-5	0.154	NON_SYNONYMOUS_CODING salr
2L	4018629	2L_4018629_SNP [dm3] 2L_4018629_SNP [dm6]	T	C	4.663e^-5	0.154	INTERGENIC
2L	11130755	2L_11130755_SNP [dm3] 2L_11130755_SNP [dm6]	G	T	4.707e^-5	0.155	START_GAINED CG4751 UTR_5_PRIME CG4751 UPSTREAM RfC38	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	7395685	2L_7395685_DEL [dm3] 2L_7395685_DEL [dm6]	GAAT	G	4.716e^-5	0.155	UPSTREAM CG5160 INTRON CG5160
2R	18344267	2R_18344267_SNP [dm3] 2R_22456762_SNP [dm6]	A	T	4.722e^-5	0.155	INTRON CG10384
2L	7485073	2L_7485073_SNP [dm3] 2L_7485073_SNP [dm6]	G	A	4.724e^-5	0.155	INTRON Ziz
3L	10357481	3L_10357481_SNP [dm3] 3L_10364381_SNP [dm6]	G	T	4.729e^-5	0.155	UPSTREAM CR44327 & 1 other EXON CR44327	TF binding site BDTNP1_TFBS_dl
2L	14196469	2L_14196469_SNP [dm3] 2L_14196469_SNP [dm6]	G	T	4.737e^-5	0.155	INTRON Dyrk2
2L	7659160	2L_7659160_SNP [dm3] 2L_7659160_SNP [dm6]	G	T	4.752e^-5	0.155	INTRON Slob
3R	26516897	3R_26516897_SNP [dm3] 3R_30691175_SNP [dm6]	G	A	4.763e^-5	0.155	SYNONYMOUS_CODING Spn100A	TF binding site mE1_TFBS_cad
3L	5098651	3L_5098651_SNP [dm3] 3L_5098651_SNP [dm6]	C	A	4.784e^-5	0.155	EXON CR34047
2L	7339064	2L_7339064_INS [dm3] 2L_7339064_INS [dm6]	A	AT	4.794e^-5	0.155	INTRON Wnt6
3R	4017575	3R_4017575_SNP [dm3] 3R_8191853_SNP [dm6]	A	T	4.795e^-5	0.155	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
3R	4948262	3R_4948262_SNP [dm3] 3R_9122540_SNP [dm6]	C	T	4.796e^-5	0.155	INTRON pum
3R	18449479	3R_18449479_SNP [dm3] 3R_22623757_SNP [dm6]	C	G	4.798e^-5	0.155	INTRON loco	regulatory region REDfly_CRMs TF binding site mE1_TFBS_h mE1_TFBS_HSA
3L	11126055	3L_11126055_SNP [dm3] 3L_11132955_SNP [dm6]	G	A	4.807e^-5	0.155	SYNONYMOUS_CODING CG42575 UPSTREAM CG32074	TF binding site mE1_TFBS_cad
3L	389492	3L_389492_SNP [dm3] 3L_389492_SNP [dm6]	G	A	4.826e^-5	0.155	INTRON trh
3L	3709576	3L_3709576_SNP [dm3] 3L_3709576_SNP [dm6]	A	C	4.829e^-5	0.155	DOWNSTREAM CR45675 INTERGENIC
3R	3358093	3R_3358093_SNP [dm3] 3R_7532371_SNP [dm6]	G	T	4.837e^-5	0.155	SYNONYMOUS_CODING alphaTub84D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5030430	2L_5030430_SNP [dm3] 2L_5030430_SNP [dm6]	T	A	4.845e^-5	0.155	INTRON Cg25C	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2L	12264225	2L_12264225_SNP [dm3] 2L_12264225_SNP [dm6]	A	G	4.864e^-5	0.155	INTRON aret
3L	3344850	3L_3344850_SNP [dm3] 3L_3344850_SNP [dm6]	G	A	4.865e^-5	0.155	INTRON kst
X	12982096	X_12982096_SNP [dm3] X_13088063_SNP [dm6]	G	A	4.879e^-5	0.155	INTRON hep	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	11370241	3L_11370241_SNP [dm3] 3L_11377141_SNP [dm6]	T	C	4.883e^-5	0.155	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
X	19325993	X_19325993_SNP [dm3] X_19431960_SNP [dm6]	T	C	4.893e^-5	0.156	INTRON kek5	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	12115693	X_12115693_MNP [dm3] X_12221660_MNP [dm6]	TTT	ACA	4.915e^-5	0.156	INTRON Ten-a
2L	10208986	2L_10208986_SNP [dm3] 2L_10208986_SNP [dm6]	G	A	4.928e^-5	0.156	UPSTREAM CR44845 DOWNSTREAM CG5727 INTRON CG5731 EXON CR44845	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	18344290	2R_18344290_SNP [dm3] 2R_22456785_SNP [dm6]	C	G	4.934e^-5	0.156	INTRON CG10384
2L	11409406	2L_11409406_SNP [dm3] 2L_11409406_SNP [dm6]	G	T	4.959e^-5	0.157	INTERGENIC	regulatory region REDfly_CRMs
X	16567220	X_16567220_SNP [dm3] X_16673187_SNP [dm6]	A	C	5.004e^-5	0.158	UPSTREAM CG13012 INTRON CG13012
3L	11351578	3L_11351578_SNP [dm3] 3L_11358478_SNP [dm6]	A	T	5.021e^-5	0.158	INTERGENIC
3R	18449693	3R_18449693_SNP [dm3] 3R_22623971_SNP [dm6]	G	A	5.066e^-5	0.159	INTRON loco	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2L	11401051	2L_11401051_SNP [dm3] 2L_11401051_SNP [dm6]	G	T	5.101e^-5	0.16	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13913326	3R_13913326_SNP [dm3] 3R_18087604_SNP [dm6]	T	C	5.144e^-5	0.161	INTERGENIC
2L	11591901	2L_11591901_SNP [dm3] 2L_11591901_SNP [dm6]	T	A	5.186e^-5	0.162	UPSTREAM Acp33A INTRON kek2
3R	385350	3R_385350_SNP [dm3] 3R_4559628_SNP [dm6]	A	G	5.199e^-5	0.162	INTERGENIC
2L	11722052	2L_11722052_SNP [dm3] 2L_11722052_SNP [dm6]	A	C	5.201e^-5	0.162	EXON CR44143
3L	7753631	3L_7753631_SNP [dm3] 3L_7760531_SNP [dm6]	G	T	5.234e^-5	0.162	UTR_5_PRIME Hn UPSTREAM Hn
3L	3673766	3L_3673766_SNP [dm3] 3L_3673766_SNP [dm6]	G	C	5.235e^-5	0.162	INTERGENIC
2L	16520302	2L_16520302_SNP [dm3] 2L_16520302_SNP [dm6]	A	C	5.236e^-5	0.162	UPSTREAM CG5953 INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
3L	3330860	3L_3330860_SNP [dm3] 3L_3330860_SNP [dm6]	A	G	5.269e^-5	0.163	SYNONYMOUS_CODING CG14961	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	16739547	2R_16739547_SNP [dm3] 2R_20852042_SNP [dm6]	A	C	5.274e^-5	0.163	NON_SYNONYMOUS_CODING CG9993
2L	11362291	2L_11362291_SNP [dm3] 2L_11362291_SNP [dm6]	A	T	5.315e^-5	0.164	INTRON salr	regulatory region REDfly_CRMs
2L	11375371	2L_11375371_INS [dm3] 2L_11375371_INS [dm6]	C	AG	5.334e^-5	0.164	INTERGENIC	regulatory region REDfly_CRMs
2L	3181333	2L_3181333_SNP [dm3] 2L_3181333_SNP [dm6]	C	G	5.369e^-5	0.165	INTRON CG34393
2L	11449767	2L_11449767_SNP [dm3] 2L_11449767_SNP [dm6]	C	A	5.384e^-5	0.165	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	11113469	2R_11113469_SNP [dm3] 2R_15225964_SNP [dm6]	G	T	5.393e^-5	0.165	UPSTREAM CR44370 INTRON Fs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	13461680	X_13461680_SNP [dm3] X_13567647_SNP [dm6]	A	T	5.395e^-5	0.165	INTRON Tango13	TF binding site BDTNP1_TFBS_prd
X	7212302	X_7212302_SNP [dm3] X_7318269_SNP [dm6]	G	C	5.413e^-5	0.165	INTRON CR44357 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco
2L	7511728	2L_7511728_DEL [dm3] 2L_7511728_DEL [dm6]	GC	G	5.417e^-5	0.165	INTRON RapGAP1
2L	3573538	2L_3573538_SNP [dm3] 2L_3573538_SNP [dm6]	T	A	5.437e^-5	0.165	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2L	18172689	2L_18172689_SNP [dm3] 2L_18172689_SNP [dm6]	G	A	5.449e^-5	0.165	INTRON CG42750
3L	3345154	3L_3345154_SNP [dm3] 3L_3345154_SNP [dm6]	T	A	5.458e^-5	0.165	INTRON kst
X	11203658	X_11203658_SNP [dm3] X_11309625_SNP [dm6]	T	G	5.458e^-5	0.165	INTRON Ir10a
2L	11411509	2L_11411509_SNP [dm3] 2L_11411509_SNP [dm6]	A	T	5.484e^-5	0.166	INTERGENIC	regulatory region REDfly_CRMs
3L	5945371	3L_5945371_SNP [dm3] 3L_5952271_SNP [dm6]	G	A	5.501e^-5	0.166	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11390854	2L_11390854_SNP [dm3] 2L_11390854_SNP [dm6]	A	G	5.515e^-5	0.166	SPLICE_SITE_REGION CR43681 INTRON CR43681 EXON CR43681	regulatory region REDfly_CRMs
2L	16520383	2L_16520383_SNP [dm3] 2L_16520383_SNP [dm6]	C	G	5.525e^-5	0.166	UPSTREAM CG5953 INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
2L	11475130	2L_11475130_SNP [dm3] 2L_11475130_SNP [dm6]	A	G	5.555e^-5	0.167	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_ttk
X	13830850	X_13830850_SNP [dm3] X_13936817_SNP [dm6]	T	C	5.578e^-5	0.167	INTRON mamo
2R	20145419	2R_20145419_SNP [dm3] 2R_24257896_SNP [dm6]	A	G	5.581e^-5	0.167	UPSTREAM CG3376 DOWNSTREAM CG13575 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	14241620	X_14241620_SNP [dm3] X_14347587_SNP [dm6]	T	C	5.611e^-5	0.167	INTRON dpr8
2L	7140920	2L_7140920_SNP [dm3] 2L_7140920_SNP [dm6]	C	T	5.613e^-5	0.167	INTRON Pvf3
2L	7140921	2L_7140921_SNP [dm3] 2L_7140921_SNP [dm6]	T	G	5.613e^-5	0.167	INTRON Pvf3
X	6054228	X_6054228_SNP [dm3] X_6160195_SNP [dm6]	C	T	5.630e^-5	0.168	INTRON Ca-alpha1T
2L	509731	2L_509731_SNP [dm3] 2L_509731_SNP [dm6]	C	T	5.654e^-5	0.168	INTRON ush	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5430649	2L_5430649_SNP [dm3] 2L_5430649_SNP [dm6]	A	T	5.683e^-5	0.168	INTERGENIC	TF binding site mE1_TFBS_sens
2L	5433566	2L_5433566_SNP [dm3] 2L_5433566_SNP [dm6]	C	G	5.683e^-5	0.168	DOWNSTREAM CR43713 & 2 others INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	3485692	2L_3485692_SNP [dm3] 2L_3485692_SNP [dm6]	A	T	5.693e^-5	0.168	INTRON CG15414
2R	15278282	2R_15278282_SNP [dm3] 2R_19390777_SNP [dm6]	T	A	5.697e^-5	0.168	SYNONYMOUS_CODING CG11257	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	10635726	2L_10635726_SNP [dm3] 2L_10635726_SNP [dm6]	C	A	5.708e^-5	0.168	INTRON CG7329
2L	10666835	2L_10666835_SNP [dm3] 2L_10666835_SNP [dm6]	C	A	5.708e^-5	0.168	INTRON CG31871
X	15402824	X_15402824_SNP [dm3] X_15508791_SNP [dm6]	C	A	5.722e^-5	0.168	UPSTREAM mir-304 & 1 other DOWNSTREAM mir-283 INTRON Gmap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19377115	2L_19377115_SNP [dm3] 2L_19377115_SNP [dm6]	C	T	5.728e^-5	0.168	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	19546213	X_19546213_SNP [dm3] X_19652180_SNP [dm6]	T	C	5.743e^-5	0.168	UTR_5_PRIME Ranbp21 UPSTREAM CG14215 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
X	19546216	X_19546216_SNP [dm3] X_19652183_SNP [dm6]	A	T	5.743e^-5	0.168	UTR_5_PRIME Ranbp21 UPSTREAM CG14215 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2L	5393695	2L_5393695_SNP [dm3] 2L_5393695_SNP [dm6]	T	A	5.755e^-5	0.168	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	13581924	2L_13581924_SNP [dm3] 2L_13581924_SNP [dm6]	T	C	5.757e^-5	0.168	UPSTREAM CR44973 INTRON kuz	transposable element FlyBase
3R	13698039	3R_13698039_SNP [dm3] 3R_17872317_SNP [dm6]	T	C	5.768e^-5	0.168	UTR_3_PRIME tinc DOWNSTREAM Rim
2L	14424866	2L_14424866_SNP [dm3] 2L_14424866_SNP [dm6]	G	A	5.771e^-5	0.168	SYNONYMOUS_CODING Cpr35B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	11207840	2L_11207840_SNP [dm3] 2L_11207840_SNP [dm6]	C	G	5.795e^-5	0.168	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	9487588	2L_9487588_SNP [dm3] 2L_9487588_SNP [dm6]	A	G	5.799e^-5	0.168	INTERGENIC
X	13462253	X_13462253_SNP [dm3] X_13568220_SNP [dm6]	C	T	5.799e^-5	0.168	INTRON Tango13
X	12977774	X_12977774_SNP [dm3] X_13083741_SNP [dm6]	T	C	5.803e^-5	0.168	INTRON hep
2R	4945975	2R_4945975_SNP [dm3] 2R_9058470_SNP [dm6]	G	T	5.828e^-5	0.168	INTRON CG13743
2R	14069362	2R_14069362_SNP [dm3] 2R_18181857_SNP [dm6]	A	T	5.838e^-5	0.168	DOWNSTREAM CG5721 INTRON nopo
2L	14008313	2L_14008313_SNP [dm3] 2L_14008313_SNP [dm6]	T	G	5.883e^-5	0.169	INTRON CG42692
3L	615654	3L_615654_SNP [dm3] 3L_615654_SNP [dm6]	C	A	5.906e^-5	0.169	EXON CR42719	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA
2L	17102686	2L_17102686_SNP [dm3] 2L_17102686_SNP [dm6]	C	T	5.914e^-5	0.169	INTERGENIC
2L	13979805	2L_13979805_SNP [dm3] 2L_13979805_SNP [dm6]	C	T	5.916e^-5	0.169	UPSTREAM NimC2 DOWNSTREAM Cyp28a5 INTERGENIC
3R	24538899	3R_24538899_DEL [dm3] 3R_28713177_DEL [dm6]	TA	T	5.930e^-5	0.169	INTRON htt
2L	12366596	2L_12366596_SNP [dm3] 2L_12366596_SNP [dm6]	G	A	5.940e^-5	0.169	INTRON bru-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	4948267	3R_4948267_SNP [dm3] 3R_9122545_SNP [dm6]	T	G	5.952e^-5	0.169	INTRON pum
X	12361563	X_12361563_SNP [dm3] X_12467530_SNP [dm6]	A	G	5.958e^-5	0.169	INTRON CG42258	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12361565	X_12361565_SNP [dm3] X_12467532_SNP [dm6]	T	A	5.958e^-5	0.169	INTRON CG42258	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12160857	3L_12160857_SNP [dm3] 3L_12167757_SNP [dm6]	T	A	5.977e^-5	0.17	INTRON Rh7
3R	6789105	3R_6789105_SNP [dm3] 3R_10963383_SNP [dm6]	A	G	5.990e^-5	0.17	INTERGENIC
2R	8783521	2R_8783521_SNP [dm3] 2R_12896016_SNP [dm6]	C	G	6.002e^-5	0.17	INTRON vg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7357602	3L_7357602_DEL [dm3] 3L_7364502_DEL [dm6]	TTAACA	T	6.003e^-5	0.17	DOWNSTREAM Sh3beta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	4410980	3R_4410980_SNP [dm3] 3R_8585258_SNP [dm6]	T	C	6.036e^-5	0.17	INTRON 5-HT2B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	22930162	3R_22930162_SNP [dm3] 3R_27104440_SNP [dm6]	G	A	6.053e^-5	0.17	INTRON CG6074
2L	11411546	2L_11411546_SNP [dm3] 2L_11411546_SNP [dm6]	A	G	6.070e^-5	0.171	INTERGENIC	regulatory region REDfly_CRMs
2L	13072231	2L_13072231_SNP [dm3] 2L_13072231_SNP [dm6]	C	T	6.081e^-5	0.171	INTERGENIC
3L	5482446	3L_5482446_SNP [dm3] 3L_5489346_SNP [dm6]	T	G	6.086e^-5	0.171	INTERGENIC
X	19545684	X_19545684_SNP [dm3] X_19651651_SNP [dm6]	G	C	6.119e^-5	0.171	UTR_5_PRIME Ranbp21 UPSTREAM CG14215	TF binding site BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	18336891	2R_18336891_SNP [dm3] 2R_22449386_SNP [dm6]	A	G	6.172e^-5	0.172	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	18877819	2L_18877819_SNP [dm3] 2L_18877819_SNP [dm6]	T	C	6.181e^-5	0.172	INTRON tup	TF binding site BDTNP1_TFBS_da mE1_TFBS_disco mE1_TFBS_HSA
3R	18449702	3R_18449702_SNP [dm3] 3R_22623980_SNP [dm6]	A	T	6.186e^-5	0.172	INTRON loco	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3R	12490983	3R_12490983_SNP [dm3] 3R_16665261_SNP [dm6]	A	T	6.205e^-5	0.173	INTRON Ubx
X	18417488	X_18417488_SNP [dm3] X_18523455_SNP [dm6]	T	A	6.212e^-5	0.173	INTRON Bx	TF binding site BDTNP1_TFBS_dl
2L	5395456	2L_5395456_SNP [dm3] 2L_5395456_SNP [dm6]	A	G	6.256e^-5	0.173	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	12977666	X_12977666_SNP [dm3] X_13083633_SNP [dm6]	A	G	6.261e^-5	0.173	INTRON hep
2L	12347330	2L_12347330_SNP [dm3] 2L_12347330_SNP [dm6]	T	C	6.307e^-5	0.174	UPSTREAM bru-2 INTRON bru-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	13157250	2L_13157250_SNP [dm3] 2L_13157250_SNP [dm6]	C	T	6.321e^-5	0.174	INTERGENIC
2L	14700735	2L_14700735_SNP [dm3] 2L_14700735_SNP [dm6]	T	A	6.322e^-5	0.174	INTERGENIC
2L	9626782	2L_9626782_INS [dm3] 2L_9626782_INS [dm6]	T	TTTACATAT	6.351e^-5	0.175	INTERGENIC
2L	8710829	2L_8710829_SNP [dm3] 2L_8710829_SNP [dm6]	C	T	6.377e^-5	0.175	SYNONYMOUS_CODING raw	TF binding site mE1_TFBS_chinmo
3L	11488657	3L_11488657_SNP [dm3] 3L_11495557_SNP [dm6]	C	A	6.387e^-5	0.175	UTR_3_PRIME chrb	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
3R	3574880	3R_3574880_SNP [dm3] 3R_7749158_SNP [dm6]	G	A	6.466e^-5	0.177	SYNONYMOUS_CODING pyd3	TF binding site BDTNP1_TFBS_twi
2R	13843067	2R_13843067_SNP [dm3] 2R_17955562_SNP [dm6]	C	G	6.481e^-5	0.177	SYNONYMOUS_CODING PpY-55A DOWNSTREAM CR44418
2R	17309101	2R_17309101_SNP [dm3] 2R_21421596_SNP [dm6]	T	C	6.488e^-5	0.177	INTRON Sdc
2L	11326259	2L_11326259_SNP [dm3] 2L_11326259_SNP [dm6]	G	A	6.556e^-5	0.179	INTERGENIC
X	19546576	X_19546576_SNP [dm3] X_19652543_SNP [dm6]	G	A	6.569e^-5	0.179	NON_SYNONYMOUS_CODING CG14215 UPSTREAM Ranbp21	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	4682584	2R_4682584_SNP [dm3] 2R_8795079_SNP [dm6]	C	G	6.593e^-5	0.179	INTERGENIC
X	13463226	X_13463226_SNP [dm3] X_13569193_SNP [dm6]	G	T	6.602e^-5	0.179	INTRON Tango13
X	19535713	X_19535713_SNP [dm3] X_19641680_SNP [dm6]	C	T	6.610e^-5	0.179	UTR_3_PRIME CG12237 DOWNSTREAM Rcd-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	19535743	X_19535743_SNP [dm3] X_19641710_SNP [dm6]	A	T	6.610e^-5	0.179	UTR_3_PRIME CG12237 DOWNSTREAM Rcd-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	11213765	X_11213765_SNP [dm3] X_11319732_SNP [dm6]	C	G	6.616e^-5	0.179	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA
2R	9240505	2R_9240505_INS [dm3] 2R_13353000_INS [dm6]	C	CA	6.638e^-5	0.179	DOWNSTREAM CG17048 INTRON CR44206
2L	14537735	2L_14537735_SNP [dm3] 2L_14537735_SNP [dm6]	T	A	6.660e^-5	0.179	INTERGENIC	TF binding site mE1_TFBS_Ubx
2L	16523737	2L_16523737_SNP [dm3] 2L_16523737_SNP [dm6]	T	A	6.664e^-5	0.179	INTRON CG5953
2L	11846207	2L_11846207_DEL [dm3] 2L_11846207_DEL [dm6]	TT	T	6.666e^-5	0.179	INTRON Pde1c
3R	12579217	3R_12579217_SNP [dm3] 3R_16753495_SNP [dm6]	G	T	6.694e^-5	0.18	INTRON bxd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5945373	3L_5945373_SNP [dm3] 3L_5952273_SNP [dm6]	A	C	6.718e^-5	0.18	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9820829	2R_9820829_SNP [dm3] 2R_13933324_SNP [dm6]	G	A	6.719e^-5	0.18	INTRON shot	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	11333944	2L_11333944_SNP [dm3] 2L_11333944_SNP [dm6]	C	T	6.720e^-5	0.18	INTERGENIC
2R	1391758	2R_1391758_SNP [dm3] 2R_5504253_SNP [dm6]	T	C	6.731e^-5	0.18	INTRON CG30438 & 1 other
2L	11297077	2L_11297077_SNP [dm3] 2L_11297077_SNP [dm6]	C	T	6.735e^-5	0.18	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	11371032	2L_11371032_SNP [dm3] 2L_11371032_SNP [dm6]	C	A	6.741e^-5	0.18	INTRON salr
3R	13644616	3R_13644616_SNP [dm3] 3R_17818894_SNP [dm6]	A	C	6.753e^-5	0.18	INTRON tinc
2L	11509606	2L_11509606_SNP [dm3] 2L_11509606_SNP [dm6]	G	A	6.773e^-5	0.18	SYNONYMOUS_CODING CG6509 UTR_3_PRIME CG6509 DOWNSTREAM spz4
3L	5343932	3L_5343932_SNP [dm3] 3L_5350832_SNP [dm6]	G	T	6.780e^-5	0.18	INTRON lama
2L	14008314	2L_14008314_SNP [dm3] 2L_14008314_SNP [dm6]	G	T	6.816e^-5	0.181	INTRON CG42692
2L	11291351	2L_11291351_SNP [dm3] 2L_11291351_SNP [dm6]	G	A	6.848e^-5	0.181	UPSTREAM CR43409 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3344816	3L_3344816_DEL [dm3] 3L_3344816_DEL [dm6]	GGGGTTCTGTTTG...	G	6.854e^-5	0.181	INTRON kst
3L	5945362	3L_5945362_SNP [dm3] 3L_5952262_SNP [dm6]	A	G	6.880e^-5	0.181	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13658194	3R_13658194_SNP [dm3] 3R_17832472_SNP [dm6]	T	A	6.900e^-5	0.181	INTRON tinc
3R	18558248	3R_18558248_SNP [dm3] 3R_22732526_SNP [dm6]	G	A	6.903e^-5	0.181	SYNONYMOUS_CODING Takl2 DOWNSTREAM CG45049	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	5393823	2L_5393823_SNP [dm3] 2L_5393823_SNP [dm6]	C	T	6.921e^-5	0.181	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	7096307	2L_7096307_SNP [dm3] 2L_7096307_SNP [dm6]	G	A	6.946e^-5	0.181	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	18449715	3R_18449715_SNP [dm3] 3R_22623993_SNP [dm6]	A	G	6.949e^-5	0.181	INTRON loco	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	4560054	3L_4560054_SNP [dm3] 3L_4560054_SNP [dm6]	A	C	6.950e^-5	0.181	INTRON CG42540
2L	11881864	2L_11881864_SNP [dm3] 2L_11881864_SNP [dm6]	T	A	6.986e^-5	0.181	INTRON Pde1c
X	13461691	X_13461691_SNP [dm3] X_13567658_SNP [dm6]	A	G	6.986e^-5	0.181	INTRON Tango13	TF binding site BDTNP1_TFBS_prd
2L	18258781	2L_18258781_SNP [dm3] 2L_18258781_SNP [dm6]	G	A	7.002e^-5	0.181	UPSTREAM CG31788 INTRON CG42750
2L	14537670	2L_14537670_SNP [dm3] 2L_14537670_SNP [dm6]	G	A	7.015e^-5	0.181	INTERGENIC	TF binding site mE1_TFBS_Ubx
2R	7120967	2R_7120967_SNP [dm3] 2R_11233462_SNP [dm6]	T	G	7.020e^-5	0.181	SYNONYMOUS_CODING CG13218 UPSTREAM metro & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_Trl
2L	9883654	2L_9883654_SNP [dm3] 2L_9883654_SNP [dm6]	T	A	7.036e^-5	0.181	INTRON nAChRalpha6
2L	18940292	2L_18940292_SNP [dm3] 2L_18940292_SNP [dm6]	C	T	7.048e^-5	0.181	NON_SYNONYMOUS_CODING ssp3	TF binding site mE1_TFBS_cad
2L	11294809	2L_11294809_SNP [dm3] 2L_11294809_SNP [dm6]	A	G	7.053e^-5	0.181	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	6231067	2L_6231067_SNP [dm3] 2L_6231067_SNP [dm6]	A	G	7.054e^-5	0.181	UPSTREAM CR44823 INTERGENIC
X	18182405	X_18182405_SNP [dm3] X_18288372_SNP [dm6]	C	T	7.081e^-5	0.181	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	19535704	X_19535704_SNP [dm3] X_19641671_SNP [dm6]	T	A	7.093e^-5	0.181	UTR_3_PRIME CG12237 DOWNSTREAM Rcd-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	12973724	X_12973724_SNP [dm3] X_13079691_SNP [dm6]	A	G	7.100e^-5	0.181	UTR_3_PRIME hep DOWNSTREAM hep & 1 other
2L	11234919	2L_11234919_SNP [dm3] 2L_11234919_SNP [dm6]	T	C	7.119e^-5	0.181	UTR_5_PRIME ab DOWNSTREAM snoRNA:Me18S-G642 INTRON ab
2L	11347189	2L_11347189_SNP [dm3] 2L_11347189_SNP [dm6]	C	T	7.119e^-5	0.181	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	11347190	2L_11347190_SNP [dm3] 2L_11347190_SNP [dm6]	C	T	7.119e^-5	0.181	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	11364605	2L_11364605_SNP [dm3] 2L_11364605_SNP [dm6]	A	C	7.119e^-5	0.181	UPSTREAM salr INTRON salr	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	11377838	2L_11377838_SNP [dm3] 2L_11377838_SNP [dm6]	C	T	7.119e^-5	0.181	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	11427366	2L_11427366_SNP [dm3] 2L_11427366_SNP [dm6]	A	C	7.119e^-5	0.181	INTERGENIC
3R	15693233	3R_15693233_SNP [dm3] 3R_19867511_SNP [dm6]	G	A	7.150e^-5	0.181	STOP_GAINED CG4562 DOWNSTREAM CG4686 INTRON CG4562	TF binding site mE1_TFBS_cad
2L	11172631	2L_11172631_SNP [dm3] 2L_11172631_SNP [dm6]	A	T	7.154e^-5	0.181	UPSTREAM Vm32E INTRON Ca-beta
2L	12140299	2L_12140299_SNP [dm3] 2L_12140299_SNP [dm6]	T	A	7.161e^-5	0.181	UTR_3_PRIME Gr33a
3R	4017676	3R_4017676_SNP [dm3] 3R_8191954_SNP [dm6]	A	T	7.165e^-5	0.181	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Kr
3L	18649077	3L_18649077_SNP [dm3] 3L_18655977_SNP [dm6]	A	C	7.193e^-5	0.181	INTRON MYPT-75D
3L	9461373	3L_9461373_SNP [dm3] 3L_9468273_SNP [dm6]	A	G	7.210e^-5	0.181	INTRON CG44838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11431276	2L_11431276_SNP [dm3] 2L_11431276_SNP [dm6]	A	T	7.214e^-5	0.181	INTERGENIC
3R	4715773	3R_4715773_SNP [dm3] 3R_8890051_SNP [dm6]	T	A	7.216e^-5	0.181	INTRON pyd
3R	4909877	3R_4909877_DEL [dm3] 3R_9084155_DEL [dm6]	TT	T	7.223e^-5	0.181	INTRON pum
2L	16520350	2L_16520350_SNP [dm3] 2L_16520350_SNP [dm6]	T	C	7.267e^-5	0.181	UPSTREAM CG5953 INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
2L	5434677	2L_5434677_SNP [dm3] 2L_5434677_SNP [dm6]	G	C	7.274e^-5	0.181	UPSTREAM CR43715 DOWNSTREAM CR31647 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	6477479	3L_6477479_SNP [dm3] 3L_6484379_SNP [dm6]	C	A	7.285e^-5	0.181	SYNONYMOUS_CODING CG42747	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1387151	2R_1387151_SNP [dm3] 2R_5499646_SNP [dm6]	G	A	7.290e^-5	0.181	INTRON CG30438
3L	12461642	3L_12461642_SNP [dm3] 3L_12468542_SNP [dm6]	T	C	7.296e^-5	0.181	UPSTREAM eyg DOWNSTREAM CG32102 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn
2L	11881830	2L_11881830_SNP [dm3] 2L_11881830_SNP [dm6]	T	G	7.305e^-5	0.181	INTRON Pde1c
2L	11869451	2L_11869451_SNP [dm3] 2L_11869451_SNP [dm6]	G	T	7.321e^-5	0.181	INTRON Pde1c
2R	19499869	2R_19499869_SNP [dm3] 2R_23612346_SNP [dm6]	T	G	7.324e^-5	0.181	INTRON CG17664 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	11350568	2L_11350568_DEL [dm3] 2L_11350568_DEL [dm6]	TAG	C	7.334e^-5	0.181	INTERGENIC	regulatory region REDfly_CRMs
2L	11409150	2L_11409150_SNP [dm3] 2L_11409150_SNP [dm6]	T	G	7.340e^-5	0.181	INTERGENIC	regulatory region REDfly_CRMs
2L	11418295	2L_11418295_SNP [dm3] 2L_11418295_SNP [dm6]	G	A	7.366e^-5	0.181	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11420840	2L_11420840_SNP [dm3] 2L_11420840_SNP [dm6]	A	C	7.366e^-5	0.181	INTERGENIC
X	9724114	X_9724114_SNP [dm3] X_9830081_SNP [dm6]	T	A	7.389e^-5	0.181	INTRON CG32698
3R	3494600	3R_3494600_SNP [dm3] 3R_7668878_SNP [dm6]	C	T	7.426e^-5	0.181	INTRON Nlg1
3R	6639108	3R_6639108_SNP [dm3] 3R_10813386_SNP [dm6]	T	G	7.446e^-5	0.181	DOWNSTREAM CG14693 INTRON CG14693
X	13461650	X_13461650_SNP [dm3] X_13567617_SNP [dm6]	G	A	7.486e^-5	0.181	INTRON Tango13	TF binding site BDTNP1_TFBS_prd
2L	14456165	2L_14456165_SNP [dm3] 2L_14456165_SNP [dm6]	T	A	7.492e^-5	0.181	UPSTREAM CR44730 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Ubx
2R	12873527	2R_12873527_SNP [dm3] 2R_16986022_SNP [dm6]	A	C	7.495e^-5	0.181	INTRON Cbp53E
2L	14879047	2L_14879047_SNP [dm3] 2L_14879047_SNP [dm6]	T	G	7.496e^-5	0.181	DOWNSTREAM Mst35Ba INTERGENIC
X	12115672	X_12115672_SNP [dm3] X_12221639_SNP [dm6]	C	T	7.512e^-5	0.181	INTRON Ten-a
2R	19229866	2R_19229866_SNP [dm3] 2R_23342343_SNP [dm6]	A	T	7.516e^-5	0.181	INTERGENIC	TF binding site mE1_TFBS_cad
2L	11232815	2L_11232815_SNP [dm3] 2L_11232815_SNP [dm6]	G	A	7.579e^-5	0.181	INTRON ab
2L	11250670	2L_11250670_SNP [dm3] 2L_11250670_SNP [dm6]	G	T	7.579e^-5	0.181	INTRON ab
2L	11319580	2L_11319580_SNP [dm3] 2L_11319580_SNP [dm6]	G	T	7.579e^-5	0.181	DOWNSTREAM CR44583 INTERGENIC
2L	11324165	2L_11324165_SNP [dm3] 2L_11324165_SNP [dm6]	T	A	7.579e^-5	0.181	INTERGENIC
2L	11337320	2L_11337320_SNP [dm3] 2L_11337320_SNP [dm6]	C	T	7.579e^-5	0.181	INTERGENIC
2L	11337429	2L_11337429_SNP [dm3] 2L_11337429_SNP [dm6]	C	T	7.579e^-5	0.181	INTERGENIC
2L	11347235	2L_11347235_SNP [dm3] 2L_11347235_SNP [dm6]	C	G	7.579e^-5	0.181	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	11371365	2L_11371365_SNP [dm3] 2L_11371365_SNP [dm6]	C	G	7.579e^-5	0.181	INTRON salr	TF binding site mE1_TFBS_chinmo
2L	11371555	2L_11371555_SNP [dm3] 2L_11371555_SNP [dm6]	C	G	7.579e^-5	0.181	INTRON salr	TF binding site mE1_TFBS_chinmo
2L	11376714	2L_11376714_SNP [dm3] 2L_11376714_SNP [dm6]	T	C	7.579e^-5	0.181	INTERGENIC	regulatory region REDfly_CRMs
2L	11378150	2L_11378150_SNP [dm3] 2L_11378150_SNP [dm6]	T	A	7.579e^-5	0.181	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11380880	2L_11380880_SNP [dm3] 2L_11380880_SNP [dm6]	G	A	7.579e^-5	0.181	INTERGENIC	regulatory region REDfly_CRMs
2L	11390766	2L_11390766_SNP [dm3] 2L_11390766_SNP [dm6]	T	A	7.579e^-5	0.181	INTRON CR43681 EXON CR43681	regulatory region REDfly_CRMs
2L	11393010	2L_11393010_SNP [dm3] 2L_11393010_SNP [dm6]	A	G	7.579e^-5	0.181	UPSTREAM CR43681 INTERGENIC	regulatory region REDfly_CRMs
2L	11398676	2L_11398676_SNP [dm3] 2L_11398676_SNP [dm6]	G	C	7.579e^-5	0.181	INTERGENIC	regulatory region REDfly_CRMs
2L	11415012	2L_11415012_SNP [dm3] 2L_11415012_SNP [dm6]	C	G	7.579e^-5	0.181	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	11415046	2L_11415046_MNP [dm3] 2L_11415046_MNP [dm6]	ATA	GAG	7.579e^-5	0.181	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	11420133	2L_11420133_SNP [dm3] 2L_11420133_SNP [dm6]	G	T	7.579e^-5	0.181	INTERGENIC	TF binding site mE1_TFBS_sens
2L	11425134	2L_11425134_DEL [dm3] 2L_11425134_DEL [dm6]	CCACGCTCGCCGTAAACTAG...	C	7.579e^-5	0.181	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11427325	2L_11427325_SNP [dm3] 2L_11427325_SNP [dm6]	G	C	7.579e^-5	0.181	INTERGENIC
2L	11432107	2L_11432107_SNP [dm3] 2L_11432107_SNP [dm6]	G	T	7.579e^-5	0.181	INTERGENIC
2L	11435472	2L_11435472_SNP [dm3] 2L_11435472_SNP [dm6]	T	C	7.579e^-5	0.181	UTR_3_PRIME salm
3R	17383665	3R_17383665_SNP [dm3] 3R_21557943_SNP [dm6]	T	A	7.594e^-5	0.181	UPSTREAM slou INTERGENIC	regulatory region FlyBase TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	7565626	2R_7565626_SNP [dm3] 2R_11678121_SNP [dm6]	C	G	7.598e^-5	0.181	DOWNSTREAM Tret1-2 INTRON Roc2
2L	14619775	2L_14619775_DEL [dm3] 2L_14619775_DEL [dm6]	TACTAATCTA	T	7.605e^-5	0.181	DOWNSTREAM Adhr & 1 other INTRON osp
2L	13979791	2L_13979791_DEL [dm3] 2L_13979791_DEL [dm6]	TGGATATT	C	7.615e^-5	0.181	UPSTREAM NimC2 DOWNSTREAM Cyp28a5 INTERGENIC
2L	11423757	2L_11423757_SNP [dm3] 2L_11423757_SNP [dm6]	T	G	7.627e^-5	0.181	INTERGENIC
2L	11418306	2L_11418306_SNP [dm3] 2L_11418306_SNP [dm6]	G	T	7.649e^-5	0.181	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20134978	3L_20134978_SNP [dm3] 3L_20141878_SNP [dm6]	T	C	7.656e^-5	0.181	INTERGENIC
2L	7482042	2L_7482042_SNP [dm3] 2L_7482042_SNP [dm6]	C	T	7.660e^-5	0.181	SYNONYMOUS_CODING Ziz
2L	12264159	2L_12264159_SNP [dm3] 2L_12264159_SNP [dm6]	G	A	7.662e^-5	0.181	INTRON aret
2R	9076113	2R_9076113_SNP [dm3] 2R_13188608_SNP [dm6]	T	G	7.689e^-5	0.181	INTRON seq & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	11374610	2L_11374610_SNP [dm3] 2L_11374610_SNP [dm6]	T	C	7.709e^-5	0.181	DOWNSTREAM salr INTERGENIC
2L	11312623	2L_11312623_SNP [dm3] 2L_11312623_SNP [dm6]	C	T	7.712e^-5	0.181	INTERGENIC
2L	11599045	2L_11599045_SNP [dm3] 2L_11599045_SNP [dm6]	A	G	7.715e^-5	0.181	INTRON kek2
2L	9539863	2L_9539863_SNP [dm3] 2L_9539863_SNP [dm6]	G	A	7.751e^-5	0.181	UTR_3_PRIME Oatp30B UPSTREAM CG17855
3L	3165529	3L_3165529_SNP [dm3] 3L_3165529_SNP [dm6]	A	G	7.764e^-5	0.182	UTR_5_PRIME CG32280 UPSTREAM Asciz INTRON CG32280 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	4022973	3R_4022973_SNP [dm3] 3R_8197251_SNP [dm6]	C	T	7.827e^-5	0.183	DOWNSTREAM CR43302 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1638795	2L_1638795_SNP [dm3] 2L_1638795_SNP [dm6]	T	C	7.845e^-5	0.183	INTERGENIC
2L	20650080	2L_20650080_SNP [dm3] 2L_20650080_SNP [dm6]	A	T	7.846e^-5	0.183	UPSTREAM CG2611 DOWNSTREAM bru & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11412630	2L_11412630_SNP [dm3] 2L_11412630_SNP [dm6]	T	G	7.854e^-5	0.183	INTERGENIC	regulatory region REDfly_CRMs
2L	11253763	2L_11253763_SNP [dm3] 2L_11253763_SNP [dm6]	T	A	7.884e^-5	0.183	INTRON ab
2L	11749569	2L_11749569_DEL [dm3] 2L_11749569_DEL [dm6]	CTGC	A	7.891e^-5	0.183	INTERGENIC
2L	11227499	2L_11227499_SNP [dm3] 2L_11227499_SNP [dm6]	G	T	7.923e^-5	0.183	INTRON ab
2L	11236129	2L_11236129_SNP [dm3] 2L_11236129_SNP [dm6]	A	T	7.923e^-5	0.183	INTRON ab	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11392720	2L_11392720_SNP [dm3] 2L_11392720_SNP [dm6]	G	A	7.923e^-5	0.183	UPSTREAM CR43681 INTERGENIC	regulatory region REDfly_CRMs
3L	12871009	3L_12871009_SNP [dm3] 3L_12877909_SNP [dm6]	T	A	7.924e^-5	0.183	INTERGENIC
2L	4951900	2L_4951900_SNP [dm3] 2L_4951900_SNP [dm6]	T	A	7.939e^-5	0.183	DOWNSTREAM Jon25Bii INTERGENIC
X	12361455	X_12361455_SNP [dm3] X_12467422_SNP [dm6]	C	G	7.944e^-5	0.183	INTRON CG42258	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13566368	2R_13566368_SNP [dm3] 2R_17678863_SNP [dm6]	C	T	7.956e^-5	0.183	INTRON Sema-1b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	15954440	2R_15954440_SNP [dm3] 2R_20066935_SNP [dm6]	C	T	7.956e^-5	0.183	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6534307	2R_6534307_SNP [dm3] 2R_10646802_SNP [dm6]	T	C	7.987e^-5	0.183	SYNONYMOUS_CODING Elp2	TF binding site mE1_TFBS_sens
3L	3709483	3L_3709483_SNP [dm3] 3L_3709483_SNP [dm6]	T	C	8.002e^-5	0.183	DOWNSTREAM CR45675 INTERGENIC
2L	10575548	2L_10575548_SNP [dm3] 2L_10575548_SNP [dm6]	C	T	8.023e^-5	0.183	DOWNSTREAM w-cup INTRON Trim9
2L	11427859	2L_11427859_SNP [dm3] 2L_11427859_SNP [dm6]	A	T	8.032e^-5	0.183	INTERGENIC
2L	12190794	2L_12190794_SNP [dm3] 2L_12190794_SNP [dm6]	A	T	8.033e^-5	0.183	INTRON aret
2L	6463034	2L_6463034_SNP [dm3] 2L_6463034_SNP [dm6]	G	A	8.056e^-5	0.184	INTRON CG16947	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8962189	X_8962189_SNP [dm3] X_9068156_SNP [dm6]	A	G	8.071e^-5	0.184	UPSTREAM CG15365 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	11837066	2L_11837066_SNP [dm3] 2L_11837066_SNP [dm6]	A	C	8.073e^-5	0.184	UPSTREAM Sfp33A4 & 2 others INTRON Pde1c	transposable element FlyBase
3L	5889475	3L_5889475_SNP [dm3] 3L_5896375_SNP [dm6]	C	T	8.088e^-5	0.184	SYNONYMOUS_CODING Pole2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	20354865	X_20354865_SNP [dm3] X_20483838_SNP [dm6]	G	C	8.091e^-5	0.184	INTRON RhoGAP19D
2L	5784937	2L_5784937_SNP [dm3] 2L_5784937_SNP [dm6]	A	G	8.093e^-5	0.184	DOWNSTREAM CG31913 INTRON CG9171
2R	6540671	2R_6540671_SNP [dm3] 2R_10653166_SNP [dm6]	T	C	8.105e^-5	0.184	INTERGENIC
X	21271594	X_21271594_SNP [dm3] X_21400567_SNP [dm6]	G	T	8.115e^-5	0.184	EXON CR45500	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	6727368	3R_6727368_SNP [dm3] 3R_10901646_SNP [dm6]	T	G	8.196e^-5	0.185	INTERGENIC
X	13457667	X_13457667_SNP [dm3] X_13563634_SNP [dm6]	A	G	8.224e^-5	0.186	UPSTREAM Tango13 DOWNSTREAM CG32633 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	1394523	2R_1394523_SNP [dm3] 2R_5507018_SNP [dm6]	C	T	8.233e^-5	0.186	INTRON CG30438 & 1 other
3L	9627767	3L_9627767_SNP [dm3] 3L_9634667_SNP [dm6]	G	A	8.261e^-5	0.186	INTRON fry	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	12115676	X_12115676_SNP [dm3] X_12221643_SNP [dm6]	T	C	8.265e^-5	0.186	INTRON Ten-a
2L	11296287	2L_11296287_SNP [dm3] 2L_11296287_SNP [dm6]	T	A	8.281e^-5	0.186	INTERGENIC
2L	11315127	2L_11315127_SNP [dm3] 2L_11315127_SNP [dm6]	C	T	8.281e^-5	0.186	INTERGENIC
X	10331738	X_10331738_SNP [dm3] X_10437705_SNP [dm6]	A	G	8.291e^-5	0.186	INTRON CG32683
2L	11170249	2L_11170249_SNP [dm3] 2L_11170249_SNP [dm6]	G	T	8.331e^-5	0.186	DOWNSTREAM Vm32E INTRON Ca-beta
2L	4124658	2L_4124658_SNP [dm3] 2L_4124658_SNP [dm6]	C	A	8.335e^-5	0.186	DOWNSTREAM Sr-CI INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	12023719	2L_12023719_SNP [dm3] 2L_12023719_SNP [dm6]	A	G	8.414e^-5	0.187	DOWNSTREAM CR44587 INTERGENIC
3R	4103766	3R_4103766_SNP [dm3] 3R_8278044_SNP [dm6]	G	T	8.415e^-5	0.187	UPSTREAM ato INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11418811	2L_11418811_SNP [dm3] 2L_11418811_SNP [dm6]	T	A	8.420e^-5	0.187	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18940202	2L_18940202_SNP [dm3] 2L_18940202_SNP [dm6]	G	A	8.422e^-5	0.187	SYNONYMOUS_CODING ssp3	TF binding site mE1_TFBS_cad
2L	11837049	2L_11837049_SNP [dm3] 2L_11837049_SNP [dm6]	T	C	8.427e^-5	0.187	UPSTREAM Sfp33A4 & 2 others INTRON Pde1c	transposable element FlyBase
3R	3418583	3R_3418583_SNP [dm3] 3R_7592861_SNP [dm6]	A	T	8.457e^-5	0.188	INTRON CG34127
2L	7683915	2L_7683915_SNP [dm3] 2L_7683915_SNP [dm6]	A	C	8.478e^-5	0.188	UTR_3_PRIME Myo28B1 DOWNSTREAM CR44148 INTRON Myo28B1
2L	5903477	2L_5903477_SNP [dm3] 2L_5903477_SNP [dm6]	A	G	8.480e^-5	0.188	UTR_3_PRIME CG9021	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4022604	2L_4022604_SNP [dm3] 2L_4022604_SNP [dm6]	C	T	8.519e^-5	0.188	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	8770636	2L_8770636_SNP [dm3] 2L_8770636_SNP [dm6]	G	A	8.590e^-5	0.19	SYNONYMOUS_CODING CG9465	TF binding site mE1_TFBS_sens
2R	18660348	2R_18660348_SNP [dm3] 2R_22772843_SNP [dm6]	T	A	8.640e^-5	0.19	INTRON CG42260
2R	10229699	2R_10229699_SNP [dm3] 2R_14342194_SNP [dm6]	A	G	8.642e^-5	0.19	UTR_5_PRIME Shroom INTRON Shroom	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11203697	X_11203697_SNP [dm3] X_11309664_SNP [dm6]	G	T	8.645e^-5	0.19	INTRON Ir10a
2L	7096104	2L_7096104_SNP [dm3] 2L_7096104_SNP [dm6]	A	T	8.647e^-5	0.19	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12945734	2L_12945734_INS [dm3] 2L_12945734_INS [dm6]	T	TTTCAATAACAATTCAT...	8.655e^-5	0.19	INTERGENIC
2R	18660356	2R_18660356_INS [dm3] 2R_22772851_INS [dm6]	A	ACTTTT	8.662e^-5	0.19	INTRON CG42260
X	4206410	X_4206410_SNP [dm3] X_4312377_SNP [dm6]	G	C	8.676e^-5	0.19	UPSTREAM CG15579 INTRON CR44957
2L	11836926	2L_11836926_SNP [dm3] 2L_11836926_SNP [dm6]	A	C	8.702e^-5	0.19	UPSTREAM Sfp33A4 & 2 others INTRON Pde1c
3L	5945253	3L_5945253_SNP [dm3] 3L_5952153_SNP [dm6]	C	T	8.703e^-5	0.19	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16567199	X_16567199_SNP [dm3] X_16673166_SNP [dm6]	T	C	8.708e^-5	0.19	UPSTREAM CG13012 INTRON CG13012
2L	11219905	2L_11219905_SNP [dm3] 2L_11219905_SNP [dm6]	T	G	8.745e^-5	0.191	INTRON ab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	9240477	2R_9240477_SNP [dm3] 2R_13352972_SNP [dm6]	T	A	8.751e^-5	0.191	DOWNSTREAM CG17048 INTRON CR44206
3R	3412664	3R_3412664_DEL [dm3] 3R_7586942_DEL [dm6]	CATTCATGTAC...	C	8.787e^-5	0.191	INTRON CG34127
2L	10631601	2L_10631601_SNP [dm3] 2L_10631601_SNP [dm6]	G	A	8.791e^-5	0.191	UPSTREAM CG7329 INTRON CG7329
2L	14033298	2L_14033298_SNP [dm3] 2L_14033298_SNP [dm6]	T	C	8.875e^-5	0.193	EXON CR45284
2L	14456886	2L_14456886_SNP [dm3] 2L_14456886_SNP [dm6]	C	T	8.884e^-5	0.193	UPSTREAM CR44730 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
2L	14424692	2L_14424692_SNP [dm3] 2L_14424692_SNP [dm6]	A	G	8.929e^-5	0.193	SYNONYMOUS_CODING Cpr35B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	19545813	X_19545813_SNP [dm3] X_19651780_SNP [dm6]	A	G	8.929e^-5	0.193	UTR_5_PRIME Ranbp21 UPSTREAM CG14215	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	5038623	2L_5038623_SNP [dm3] 2L_5038623_SNP [dm6]	G	A	8.942e^-5	0.193	NON_SYNONYMOUS_CODING CG14042 UTR_5_PRIME SP555 UPSTREAM SP555	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	14728474	2L_14728474_SNP [dm3] 2L_14728474_SNP [dm6]	A	G	8.989e^-5	0.194	INTRON CG42685
2L	11212852	2L_11212852_SNP [dm3] 2L_11212852_SNP [dm6]	A	G	8.991e^-5	0.194	INTRON ab
X	13457698	X_13457698_SNP [dm3] X_13563665_SNP [dm6]	A	C	9.073e^-5	0.194	UPSTREAM Tango13 DOWNSTREAM CG32633 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	2095516	3R_2095516_SNP [dm3] 3R_6269794_SNP [dm6]	A	T	9.096e^-5	0.194	INTERGENIC
2L	10888007	2L_10888007_SNP [dm3] 2L_10888007_SNP [dm6]	G	C	9.104e^-5	0.194	UTR_3_PRIME CG14071 DOWNSTREAM CR44490 & 1 other
3L	1151915	3L_1151915_INS [dm3] 3L_1151915_INS [dm6]	T	TAA	9.105e^-5	0.194	INTRON bab2
2L	10503715	2L_10503715_SNP [dm3] 2L_10503715_SNP [dm6]	A	G	9.106e^-5	0.194	INTRON Myo31DF
2L	17163152	2L_17163152_SNP [dm3] 2L_17163152_SNP [dm6]	C	G	9.116e^-5	0.194	INTRON beat-IIIa & 1 other
3L	1151911	3L_1151911_INS [dm3] 3L_1151911_INS [dm6]	A	AAATATGT	9.134e^-5	0.194	INTRON bab2
3L	4026589	3L_4026589_SNP [dm3] 3L_4026589_SNP [dm6]	C	A	9.148e^-5	0.194	UPSTREAM Gr64a & 1 other INTERGENIC
2L	7685547	2L_7685547_DEL [dm3] 2L_7685547_DEL [dm6]	TCGCAGTTTATATTTATAAA...	T	9.156e^-5	0.194	UPSTREAM CR44148 INTRON Myo28B1
2L	5540115	2L_5540115_SNP [dm3] 2L_5540115_SNP [dm6]	A	G	9.158e^-5	0.194	SPLICE_SITE_REGION Hel25E UPSTREAM CG14015 INTRON Hel25E	TF binding site mE1_TFBS_sens
X	21870746	X_21870746_DEL [dm3] X_22468910_DEL [dm6]	TGT	T	9.159e^-5	0.194	UTR_3_PRIME CG14619 DOWNSTREAM CG14619
3R	7982700	3R_7982700_SNP [dm3] 3R_12156978_SNP [dm6]	A	C	9.185e^-5	0.194	INTRON dpr15
2L	7488517	2L_7488517_SNP [dm3] 2L_7488517_SNP [dm6]	A	G	9.205e^-5	0.194	INTRON Ziz
2L	11487978	2L_11487978_DEL [dm3] 2L_11487978_DEL [dm6]	GATAGTAGTAAAAACTCTAA...	G	9.229e^-5	0.194	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	11836995	2L_11836995_SNP [dm3] 2L_11836995_SNP [dm6]	A	T	9.254e^-5	0.194	UPSTREAM Sfp33A4 & 2 others INTRON Pde1c
2L	11837057	2L_11837057_SNP [dm3] 2L_11837057_SNP [dm6]	C	A	9.254e^-5	0.194	UPSTREAM Sfp33A4 & 2 others INTRON Pde1c	transposable element FlyBase
2L	11837062	2L_11837062_SNP [dm3] 2L_11837062_SNP [dm6]	C	G	9.254e^-5	0.194	UPSTREAM Sfp33A4 & 2 others INTRON Pde1c	transposable element FlyBase
2R	6533791	2R_6533791_SNP [dm3] 2R_10646286_SNP [dm6]	G	A	9.268e^-5	0.194	SYNONYMOUS_CODING Elp2 UPSTREAM Git	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11090284	2L_11090284_SNP [dm3] 2L_11090284_SNP [dm6]	G	T	9.281e^-5	0.194	SYNONYMOUS_CODING CG16854	TF binding site mE1_TFBS_cad
2L	11125068	2L_11125068_SNP [dm3] 2L_11125068_SNP [dm6]	G	T	9.281e^-5	0.194	NON_SYNONYMOUS_CODING Nup160
X	12115706	X_12115706_SNP [dm3] X_12221673_SNP [dm6]	T	A	9.343e^-5	0.194	INTRON Ten-a
2L	7473380	2L_7473380_SNP [dm3] 2L_7473380_SNP [dm6]	A	T	9.375e^-5	0.194	UTR_3_PRIME Ziz DOWNSTREAM CG6055 INTRON Ziz	TF binding site mE1_TFBS_inv
2R	13009558	2R_13009558_SNP [dm3] 2R_17122053_SNP [dm6]	A	C	9.400e^-5	0.194	DOWNSTREAM Spn53F EXON CR45272
2R	12884309	2R_12884309_SNP [dm3] 2R_16996804_SNP [dm6]	T	C	9.440e^-5	0.194	DOWNSTREAM ste24c & 1 other INTRON ste24c & 1 other
2L	1739557	2L_1739557_SNP [dm3] 2L_1739557_SNP [dm6]	C	A	9.496e^-5	0.194	INTRON CG17646
3R	10852142	3R_10852142_SNP [dm3] 3R_15026420_SNP [dm6]	A	T	9.512e^-5	0.194	INTERGENIC
2L	11086741	2L_11086741_SNP [dm3] 2L_11086741_SNP [dm6]	C	G	9.551e^-5	0.194	UTR_5_PRIME CG16854	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	11093165	2L_11093165_SNP [dm3] 2L_11093165_SNP [dm6]	A	T	9.551e^-5	0.194	SYNONYMOUS_CODING CG4705	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	11093535	2L_11093535_SNP [dm3] 2L_11093535_SNP [dm6]	C	A	9.551e^-5	0.194	NON_SYNONYMOUS_CODING CG4705	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	11126910	2L_11126910_SNP [dm3] 2L_11126910_SNP [dm6]	G	C	9.551e^-5	0.194	SYNONYMOUS_CODING Nup160
2L	11127628	2L_11127628_SNP [dm3] 2L_11127628_SNP [dm6]	C	T	9.551e^-5	0.194	SYNONYMOUS_CODING Nup160	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11127846	2L_11127846_SNP [dm3] 2L_11127846_SNP [dm6]	A	G	9.551e^-5	0.194	SYNONYMOUS_CODING Nup160	TF binding site mE1_TFBS_inv
2L	11132430	2L_11132430_SNP [dm3] 2L_11132430_SNP [dm6]	G	A	9.551e^-5	0.194	INTRON CG4751	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	11137512	2L_11137512_SNP [dm3] 2L_11137512_SNP [dm6]	T	A	9.551e^-5	0.194	NON_SYNONYMOUS_CODING hgo
2L	11138250	2L_11138250_SNP [dm3] 2L_11138250_SNP [dm6]	A	G	9.551e^-5	0.194	NON_SYNONYMOUS_CODING hgo DOWNSTREAM Gyc32E
2L	11143145	2L_11143145_SNP [dm3] 2L_11143145_SNP [dm6]	G	A	9.551e^-5	0.194	INTRON Gyc32E
2L	11144588	2L_11144588_SNP [dm3] 2L_11144588_SNP [dm6]	T	A	9.551e^-5	0.194	UTR_3_PRIME CG31867 DOWNSTREAM CG31867 INTRON Gyc32E
2L	11148431	2L_11148431_SNP [dm3] 2L_11148431_SNP [dm6]	C	T	9.551e^-5	0.194	INTRON Gyc32E
2L	11166928	2L_11166928_SNP [dm3] 2L_11166928_SNP [dm6]	G	A	9.551e^-5	0.194	UTR_5_PRIME Ca-beta INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl
2L	11172042	2L_11172042_SNP [dm3] 2L_11172042_SNP [dm6]	C	A	9.551e^-5	0.194	UPSTREAM Vm32E INTRON Ca-beta	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_cad
2L	11194231	2L_11194231_SNP [dm3] 2L_11194231_SNP [dm6]	A	G	9.551e^-5	0.194	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
2L	11194975	2L_11194975_SNP [dm3] 2L_11194975_SNP [dm6]	C	T	9.551e^-5	0.194	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_inv
2L	11198947	2L_11198947_DEL [dm3] 2L_11198947_DEL [dm6]	TGTTG	T	9.551e^-5	0.194	INTRON Ca-beta
2L	11199264	2L_11199264_SNP [dm3] 2L_11199264_SNP [dm6]	T	C	9.551e^-5	0.194	INTRON Ca-beta
2L	11200008	2L_11200008_SNP [dm3] 2L_11200008_SNP [dm6]	T	A	9.551e^-5	0.194	INTRON Ca-beta
2L	11201328	2L_11201328_SNP [dm3] 2L_11201328_SNP [dm6]	G	C	9.551e^-5	0.194	INTRON Ca-beta
2L	11206447	2L_11206447_SNP [dm3] 2L_11206447_SNP [dm6]	G	A	9.551e^-5	0.194	UPSTREAM CR43859 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	11209158	2L_11209158_SNP [dm3] 2L_11209158_SNP [dm6]	A	C	9.551e^-5	0.194	INTERGENIC	silencer mE1_HDAC_PRE
2L	11210456	2L_11210456_SNP [dm3] 2L_11210456_SNP [dm6]	G	A	9.551e^-5	0.194	UPSTREAM ab INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	11211829	2L_11211829_SNP [dm3] 2L_11211829_SNP [dm6]	A	C	9.551e^-5	0.194	UTR_5_PRIME ab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11213757	2L_11213757_SNP [dm3] 2L_11213757_SNP [dm6]	T	G	9.551e^-5	0.194	INTRON ab
2L	11224735	2L_11224735_SNP [dm3] 2L_11224735_SNP [dm6]	T	C	9.551e^-5	0.194	INTRON ab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
2L	774703	2L_774703_SNP [dm3] 2L_774703_SNP [dm6]	G	A	9.560e^-5	0.194	DOWNSTREAM CG12506 INTERGENIC
2L	11837114	2L_11837114_DEL [dm3] 2L_11837114_DEL [dm6]	GC	T	9.588e^-5	0.194	UPSTREAM Sfp33A4 & 2 others INTRON Pde1c
2R	3182310	2R_3182310_SNP [dm3] 2R_7294805_SNP [dm6]	G	T	9.592e^-5	0.194	INTRON pwn
3L	8319733	3L_8319733_SNP [dm3] 3L_8326633_SNP [dm6]	C	T	9.603e^-5	0.194	INTRON CG34461
X	12115683	X_12115683_SNP [dm3] X_12221650_SNP [dm6]	A	G	9.634e^-5	0.194	INTRON Ten-a
2L	10833262	2L_10833262_SNP [dm3] 2L_10833262_SNP [dm6]	A	C	9.641e^-5	0.194	INTRON Nos
2L	7477611	2L_7477611_SNP [dm3] 2L_7477611_SNP [dm6]	C	T	9.646e^-5	0.194	SYNONYMOUS_CODING Ziz DOWNSTREAM CG6441	TF binding site mE1_TFBS_cad
3R	6639101	3R_6639101_SNP [dm3] 3R_10813379_SNP [dm6]	G	T	9.647e^-5	0.194	DOWNSTREAM CG14693 INTRON CG14693
2L	11212279	2L_11212279_SNP [dm3] 2L_11212279_SNP [dm6]	T	C	9.651e^-5	0.194	INTRON ab	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7472223	2L_7472223_SNP [dm3] 2L_7472223_SNP [dm6]	C	A	9.655e^-5	0.194	UTR_3_PRIME CG6055 DOWNSTREAM Ziz
2L	11641714	2L_11641714_SNP [dm3] 2L_11641714_SNP [dm6]	G	T	9.661e^-5	0.194	INTERGENIC
2L	9504688	2L_9504688_SNP [dm3] 2L_9504688_SNP [dm6]	G	A	9.680e^-5	0.194	SYNONYMOUS_CODING CG33298
2L	11211729	2L_11211729_SNP [dm3] 2L_11211729_SNP [dm6]	C	T	9.707e^-5	0.195	UPSTREAM ab INTRON ab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	3293682	3R_3293682_SNP [dm3] 3R_7467960_SNP [dm6]	A	C	9.711e^-5	0.195	EXON CR44934
3L	17051681	3L_17051681_SNP [dm3] 3L_17058581_SNP [dm6]	G	T	9.740e^-5	0.195	DOWNSTREAM Rbp6 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	1380988	2R_1380988_SNP [dm3] 2R_5493483_SNP [dm6]	G	T	9.763e^-5	0.195	INTRON CG30440
3L	9461652	3L_9461652_SNP [dm3] 3L_9468552_SNP [dm6]	C	T	9.770e^-5	0.195	INTRON CG44838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11881903	2L_11881903_SNP [dm3] 2L_11881903_SNP [dm6]	C	T	9.775e^-5	0.195	INTRON Pde1c
2L	11227967	2L_11227967_SNP [dm3] 2L_11227967_SNP [dm6]	T	C	9.800e^-5	0.195	INTRON ab
2L	11298942	2L_11298942_SNP [dm3] 2L_11298942_SNP [dm6]	T	G	9.800e^-5	0.195	INTERGENIC
2L	16290062	2L_16290062_SNP [dm3] 2L_16290062_SNP [dm6]	C	A	9.801e^-5	0.195	SYNONYMOUS_CODING pkaap	TF binding site mE1_TFBS_sens
2R	5813964	2R_5813964_SNP [dm3] 2R_9926459_SNP [dm6]	A	T	9.819e^-5	0.195	INTRON Mef2
2L	12333284	2L_12333284_SNP [dm3] 2L_12333284_SNP [dm6]	A	G	9.825e^-5	0.195	INTERGENIC
2R	7882413	2R_7882413_SNP [dm3] 2R_11994908_SNP [dm6]	T	C	9.850e^-5	0.195	UPSTREAM CR45318 DOWNSTREAM CR45319 EXON CR45319
2L	11089957	2L_11089957_SNP [dm3] 2L_11089957_SNP [dm6]	T	C	9.873e^-5	0.195	SYNONYMOUS_CODING CG16854	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8242576	X_8242576_SNP [dm3] X_8348543_SNP [dm6]	A	G	9.887e^-5	0.195	INTRON nAChRalpha3
3R	25024753	3R_25024753_SNP [dm3] 3R_29199031_SNP [dm6]	A	C	9.907e^-5	0.195	INTRON CG14515
2R	12884310	2R_12884310_SNP [dm3] 2R_16996805_SNP [dm6]	A	T	9.910e^-5	0.195	DOWNSTREAM ste24c & 1 other INTRON ste24c & 1 other
2L	6402735	2L_6402735_SNP [dm3] 2L_6402735_SNP [dm6]	C	A	9.912e^-5	0.195	INTRON CG42368	TF binding site mE1_TFBS_chinmo
2L	12289661	2L_12289661_SNP [dm3] 2L_12289661_SNP [dm6]	G	T	9.939e^-5	0.195	INTRON aret
2L	11446220	2L_11446220_SNP [dm3] 2L_11446220_SNP [dm6]	C	A	9.950e^-5	0.195	UPSTREAM salm INTERGENIC	regulatory region FlyBase silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	11138494	2L_11138494_SNP [dm3] 2L_11138494_SNP [dm6]	A	C	9.951e^-5	0.195	UTR_3_PRIME hgo DOWNSTREAM Gyc32E
2L	11213720	2L_11213720_SNP [dm3] 2L_11213720_SNP [dm6]	T	A	9.951e^-5	0.195	INTRON ab
2L	11127493	2L_11127493_SNP [dm3] 2L_11127493_SNP [dm6]	T	A	9.975e^-5	0.195	SYNONYMOUS_CODING Nup160	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11176864	2L_11176864_SNP [dm3] 2L_11176864_SNP [dm6]	T	A	9.977e^-5	0.195	INTRON Ca-beta
2L	11836923	2L_11836923_SNP [dm3] 2L_11836923_SNP [dm6]	T	G	9.984e^-5	0.195	UPSTREAM Sfp33A4 & 2 others INTRON Pde1c
3R	4121921	3R_4121921_SNP [dm3] 3R_8296199_SNP [dm6]	T	G	9.996e^-5	0.195	SPLICE_SITE_REGION CG9626 INTRON CG9626	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4070594	2L_4070594_SNP [dm3] 2L_4070594_SNP [dm6]	T	A	1.002e^-4	0.195	INTRON ed
2L	11742387	2L_11742387_SNP [dm3] 2L_11742387_SNP [dm6]	C	T	1.002e^-4	0.195	SYNONYMOUS_CODING Vha100-5
3R	3426047	3R_3426047_SNP [dm3] 3R_7600325_SNP [dm6]	A	T	1.005e^-4	0.195	INTRON CG34127
X	4189011	X_4189011_SNP [dm3] X_4294978_SNP [dm6]	C	A	1.006e^-4	0.195	INTERGENIC
X	12982009	X_12982009_SNP [dm3] X_13087976_SNP [dm6]	C	T	1.007e^-4	0.195	INTRON hep	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2R	5361460	2R_5361460_SNP [dm3] 2R_9473955_SNP [dm6]	C	T	1.008e^-4	0.195	SYNONYMOUS_CODING Camta	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6533490	2R_6533490_SNP [dm3] 2R_10645985_SNP [dm6]	C	G	1.008e^-4	0.195	UPSTREAM Git INTRON Elp2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	1792263	X_1792263_SNP [dm3] X_1898230_SNP [dm6]	T	A	1.009e^-4	0.195	INTRON arm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	20639965	3R_20639965_SNP [dm3] 3R_24814243_SNP [dm6]	C	T	1.011e^-4	0.195	UPSTREAM CG34150 & 1 other DOWNSTREAM CG5808 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	3872939	3L_3872939_SNP [dm3] 3L_3872939_SNP [dm6]	G	A	1.011e^-4	0.195	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	14903638	2R_14903638_SNP [dm3] 2R_19016133_SNP [dm6]	G	T	1.012e^-4	0.195	INTERGENIC
2R	16739385	2R_16739385_SNP [dm3] 2R_20851880_SNP [dm6]	T	C	1.012e^-4	0.195	NON_SYNONYMOUS_CODING CG9993
2L	18984241	2L_18984241_SNP [dm3] 2L_18984241_SNP [dm6]	C	A	1.013e^-4	0.195	INTRON Swip-1
2L	14615329	2L_14615329_SNP [dm3] 2L_14615329_SNP [dm6]	T	A	1.013e^-4	0.195	UPSTREAM Adhr & 1 other INTRON osp
3R	4406891	3R_4406891_SNP [dm3] 3R_8581169_SNP [dm6]	G	T	1.020e^-4	0.196	INTRON 5-HT2B
2L	14034885	2L_14034885_SNP [dm3] 2L_14034885_SNP [dm6]	T	A	1.023e^-4	0.197	EXON CR45284
2L	2277471	2L_2277471_SNP [dm3] 2L_2277471_SNP [dm6]	T	A	1.024e^-4	0.197	DOWNSTREAM CR43753 INTRON CR43753
2R	13762374	2R_13762374_SNP [dm3] 2R_17874869_SNP [dm6]	T	C	1.025e^-4	0.197	INTRON Elk
3L	12083564	3L_12083564_SNP [dm3] 3L_12090464_SNP [dm6]	C	T	1.026e^-4	0.197	INTERGENIC
2R	14070945	2R_14070945_SNP [dm3] 2R_18183440_SNP [dm6]	T	A	1.028e^-4	0.197	NON_SYNONYMOUS_CODING CG5721 DOWNSTREAM nopo & 1 other	TF binding site mE1_TFBS_sens
2L	11485471	2L_11485471_SNP [dm3] 2L_11485471_SNP [dm6]	A	C	1.031e^-4	0.197	NON_SYNONYMOUS_CODING CG43355 UTR_5_PRIME sala UPSTREAM sala	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	19351344	2R_19351344_SNP [dm3] 2R_23463821_SNP [dm6]	C	T	1.032e^-4	0.197	INTRON CG43795
X	16935282	X_16935282_SNP [dm3] X_17041249_SNP [dm6]	T	C	1.033e^-4	0.197	INTRON CG45002
2L	11151637	2L_11151637_SNP [dm3] 2L_11151637_SNP [dm6]	G	A	1.034e^-4	0.197	UTR_3_PRIME CG6287	TF binding site mE1_TFBS_cad
2L	11883757	2L_11883757_SNP [dm3] 2L_11883757_SNP [dm6]	G	A	1.042e^-4	0.198	INTRON Pde1c
2L	11473726	2L_11473726_SNP [dm3] 2L_11473726_SNP [dm6]	A	G	1.044e^-4	0.198	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3R	26516912	3R_26516912_SNP [dm3] 3R_30691190_SNP [dm6]	A	C	1.044e^-4	0.198	SYNONYMOUS_CODING Spn100A	TF binding site mE1_TFBS_cad
3R	3325633	3R_3325633_SNP [dm3] 3R_7499911_SNP [dm6]	C	T	1.045e^-4	0.198	INTRON alpha-Est9
3L	9939941	3L_9939941_SNP [dm3] 3L_9946841_SNP [dm6]	T	G	1.048e^-4	0.198	INTRON CG34356
2L	13964503	2L_13964503_SNP [dm3] 2L_13964503_SNP [dm6]	G	A	1.048e^-4	0.198	DOWNSTREAM NimB2 INTRON NimB1	TF binding site mE1_TFBS_chinmo
2L	11461968	2L_11461968_SNP [dm3] 2L_11461968_SNP [dm6]	T	C	1.050e^-4	0.198	INTERGENIC
2L	2120901	2L_2120901_SNP [dm3] 2L_2120901_SNP [dm6]	G	A	1.050e^-4	0.198	INTERGENIC
2L	3958781	2L_3958781_SNP [dm3] 2L_3958781_SNP [dm6]	A	G	1.050e^-4	0.198	INTRON fred
3R	26542615	3R_26542615_DEL [dm3] 3R_30716893_DEL [dm6]	AT	A	1.052e^-4	0.199	INTERGENIC
2L	7488660	2L_7488660_SNP [dm3] 2L_7488660_SNP [dm6]	A	G	1.054e^-4	0.199	INTRON Ziz
3L	2678325	3L_2678325_SNP [dm3] 3L_2678325_SNP [dm6]	C	A	1.054e^-4	0.199	INTRON Fife	TF binding site mE1_TFBS_chinmo
2R	1395341	2R_1395341_SNP [dm3] 2R_5507836_SNP [dm6]	G	T	1.057e^-4	0.199	UTR_5_PRIME TpnC4 INTRON CG30438 & 1 other
2L	1876989	2L_1876989_SNP [dm3] 2L_1876989_SNP [dm6]	C	T	1.057e^-4	0.199	INTRON CG31663
3R	4868027	3R_4868027_SNP [dm3] 3R_9042305_SNP [dm6]	G	T	1.058e^-4	0.199	UTR_3_PRIME hyx DOWNSTREAM Nmdmc
2L	16523785	2L_16523785_SNP [dm3] 2L_16523785_SNP [dm6]	A	G	1.060e^-4	0.199	INTRON CG5953
2R	16388731	2R_16388731_SNP [dm3] 2R_20501226_SNP [dm6]	A	G	1.064e^-4	0.199	INTERGENIC	regulatory region REDfly_CRMs

By genomic position
Variant impact
Gene name

Mitochon_Haplotype phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results