DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.062e^-12)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	5.6771	0.0585

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2201 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	12455303	2L_12455303_SNP [dm3] 2L_12455303_SNP [dm6]	A	T	1.887e^-7	0.306	DOWNSTREAM bun & 1 other INTERGENIC
2L	12454739	2L_12454739_SNP [dm3] 2L_12454739_SNP [dm6]	A	C	5.008e^-7	0.306	DOWNSTREAM bun EXON CR17024	TF binding site mE1_TFBS_sens
2L	12455321	2L_12455321_SNP [dm3] 2L_12455321_SNP [dm6]	A	C	7.486e^-7	0.306	DOWNSTREAM bun & 1 other INTERGENIC
2L	12454543	2L_12454543_SNP [dm3] 2L_12454543_SNP [dm6]	A	C	8.812e^-7	0.306	DOWNSTREAM bun EXON CR17024	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12454619	2L_12454619_SNP [dm3] 2L_12454619_SNP [dm6]	C	G	1.082e^-6	0.306	DOWNSTREAM bun EXON CR17024	TF binding site mE1_TFBS_sens
2L	12454666	2L_12454666_SNP [dm3] 2L_12454666_SNP [dm6]	C	T	1.118e^-6	0.306	DOWNSTREAM bun EXON CR17024	TF binding site mE1_TFBS_sens
2L	12454835	2L_12454835_SNP [dm3] 2L_12454835_SNP [dm6]	T	C	1.143e^-6	0.306	DOWNSTREAM bun EXON CR17024	TF binding site mE1_TFBS_sens
2L	12454840	2L_12454840_SNP [dm3] 2L_12454840_SNP [dm6]	A	C	1.434e^-6	0.336	DOWNSTREAM bun EXON CR17024	TF binding site mE1_TFBS_sens
2L	8032221	2L_8032221_SNP [dm3] 2L_8032221_SNP [dm6]	T	C	1.614e^-6	0.336	UTR_5_PRIME Cka INTRON CG7367	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_Trl
X	21946828	X_21946828_SNP [dm3] X_22544992_SNP [dm6]	A	G	2.677e^-6	0.502	UPSTREAM CG17599 INTERGENIC
2L	12455323	2L_12455323_SNP [dm3] 2L_12455323_SNP [dm6]	C	G	3.351e^-6	0.571	DOWNSTREAM bun & 1 other INTERGENIC
2R	9469833	2R_9469833_SNP [dm3] 2R_13582328_SNP [dm6]	C	T	4.034e^-6	0.631	INTRON CG6191 & 1 other
2L	12458406	2L_12458406_SNP [dm3] 2L_12458406_SNP [dm6]	C	T	4.506e^-6	0.65	INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	6638139	2R_6638139_SNP [dm3] 2R_10750634_SNP [dm6]	C	T	5.136e^-6	0.665	INTRON CG33144
2L	12454527	2L_12454527_SNP [dm3] 2L_12454527_SNP [dm6]	A	G	5.436e^-6	0.665	EXON CR17024	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13839935	2R_13839935_INS [dm3] 2R_17952430_INS [dm6]	G	GG	5.972e^-6	0.665	INTERGENIC
X	18400989	X_18400989_SNP [dm3] X_18506956_SNP [dm6]	G	C	6.025e^-6	0.665	INTRON Ggt-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_ttk
2R	11690786	2R_11690786_SNP [dm3] 2R_15803281_SNP [dm6]	C	T	7.666e^-6	0.756	INTRON Zasp52 & 1 other
2L	12455312	2L_12455312_SNP [dm3] 2L_12455312_SNP [dm6]	C	G	7.752e^-6	0.756	DOWNSTREAM bun & 1 other INTERGENIC
2L	12455846	2L_12455846_SNP [dm3] 2L_12455846_SNP [dm6]	G	T	8.246e^-6	0.756	UTR_3_PRIME bun DOWNSTREAM CR17024 & 1 other
X	21948257	X_21948257_SNP [dm3] X_22546421_SNP [dm6]	T	C	8.675e^-6	0.756	UPSTREAM CG17601 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	9382844	3R_9382844_SNP [dm3] 3R_13557122_SNP [dm6]	C	T	9.000e^-6	0.756	INTERGENIC
2R	8913557	2R_8913557_SNP [dm3] 2R_13026052_SNP [dm6]	T	C	1.009e^-5	0.756	INTERGENIC
2L	3880311	2L_3880311_SNP [dm3] 2L_3880311_SNP [dm6]	G	A	1.022e^-5	0.756	UPSTREAM capu INTRON capu
2L	12320003	2L_12320003_INS [dm3] 2L_12320003_INS [dm6]	T	TT	1.091e^-5	0.756	INTERGENIC
3L	7852205	3L_7852205_SNP [dm3] 3L_7859105_SNP [dm6]	T	A	1.123e^-5	0.756	INTRON Pdp1
2L	12455318	2L_12455318_SNP [dm3] 2L_12455318_SNP [dm6]	G	A	1.127e^-5	0.756	DOWNSTREAM bun & 1 other INTERGENIC
2R	6896965	2R_6896965_SNP [dm3] 2R_11009460_SNP [dm6]	G	A	1.136e^-5	0.756	INTRON luna	TF binding site mE1_TFBS_inv
3L	953429	3L_953429_SNP [dm3] 3L_953429_SNP [dm6]	A	G	1.195e^-5	0.756	INTRON Glut1
3L	7852135	3L_7852135_SNP [dm3] 3L_7859035_SNP [dm6]	G	C	1.210e^-5	0.756	INTRON Pdp1
2R	6966549	2R_6966549_SNP [dm3] 2R_11079044_SNP [dm6]	G	T	1.369e^-5	0.77	INTRON luna	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	21948258	X_21948258_SNP [dm3] X_22546422_SNP [dm6]	G	A	1.373e^-5	0.77	UPSTREAM CG17601 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	12454867	2L_12454867_SNP [dm3] 2L_12454867_SNP [dm6]	A	C	1.400e^-5	0.77	DOWNSTREAM bun EXON CR17024
3L	3349836	3L_3349836_SNP [dm3] 3L_3349836_SNP [dm6]	C	A	1.483e^-5	0.77	UPSTREAM kst INTRON kst	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12320029	2L_12320029_SNP [dm3] 2L_12320029_SNP [dm6]	A	G	1.498e^-5	0.77	INTERGENIC
2L	10493336	2L_10493336_SNP [dm3] 2L_10493336_SNP [dm6]	G	T	1.515e^-5	0.77	NON_SYNONYMOUS_CODING Myo31DF	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7852125	3L_7852125_SNP [dm3] 3L_7859025_SNP [dm6]	T	C	1.577e^-5	0.77	INTRON Pdp1
2R	6896964	2R_6896964_SNP [dm3] 2R_11009459_SNP [dm6]	G	T	1.590e^-5	0.77	INTRON luna	TF binding site mE1_TFBS_inv
2R	18027433	2R_18027433_SNP [dm3] 2R_22139928_SNP [dm6]	A	G	1.601e^-5	0.77	UPSTREAM gom DOWNSTREAM CG11269 INTRON a
3R	9499968	3R_9499968_SNP [dm3] 3R_13674246_SNP [dm6]	C	T	1.676e^-5	0.773	UTR_5_PRIME Task6 DOWNSTREAM CG9588	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	10487644	3L_10487644_SNP [dm3] 3L_10494544_SNP [dm6]	G	A	1.711e^-5	0.773	INTRON A2bp1
X	14742959	X_14742959_SNP [dm3] X_14848926_SNP [dm6]	G	C	1.730e^-5	0.773	UPSTREAM CG9522 INTRON Flo2
2L	10726045	2L_10726045_SNP [dm3] 2L_10726045_SNP [dm6]	G	A	1.926e^-5	0.84	UTR_5_PRIME CG6431 INTRON CG6431
X	3546696	X_3546696_SNP [dm3] X_3652663_SNP [dm6]	A	C	2.020e^-5	0.84	INTRON AstA-R1
X	8275218	X_8275218_SNP [dm3] X_8381185_SNP [dm6]	G	A	2.032e^-5	0.84	INTERGENIC
X	8275181	X_8275181_SNP [dm3] X_8381148_SNP [dm6]	G	C	2.123e^-5	0.84	INTERGENIC
2L	10824324	2L_10824324_SNP [dm3] 2L_10824324_SNP [dm6]	G	A	2.129e^-5	0.84	INTRON Nos
2L	9829979	2L_9829979_SNP [dm3] 2L_9829979_SNP [dm6]	T	C	2.165e^-5	0.84	INTRON nAChRalpha6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	12454517	2L_12454517_SNP [dm3] 2L_12454517_SNP [dm6]	A	C	2.199e^-5	0.84	EXON CR17024	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5385071	2R_5385071_SNP [dm3] 2R_9497566_SNP [dm6]	G	A	2.411e^-5	0.84	INTRON Wnt2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9598676	2L_9598676_SNP [dm3] 2L_9598676_SNP [dm6]	G	T	2.535e^-5	0.84	DOWNSTREAM CG4382 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2R	11690808	2R_11690808_SNP [dm3] 2R_15803303_SNP [dm6]	G	T	2.576e^-5	0.84	INTRON Zasp52 & 1 other
2R	5385103	2R_5385103_SNP [dm3] 2R_9497598_SNP [dm6]	G	A	2.688e^-5	0.84	INTRON Wnt2	TF binding site mE1_TFBS_chinmo
3L	19601788	3L_19601788_DEL [dm3] 3L_19608688_DEL [dm6]	TTATA	GG	2.715e^-5	0.84	DOWNSTREAM CG9372 INTRON Lon
3R	23415814	3R_23415814_SNP [dm3] 3R_27590092_SNP [dm6]	C	G	2.737e^-5	0.84	SYNONYMOUS_CODING CG5639	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4750618	X_4750618_SNP [dm3] X_4856585_SNP [dm6]	A	T	2.777e^-5	0.84	INTRON CG42594
3L	7280098	3L_7280098_DEL [dm3] 3L_7286998_DEL [dm6]	TTT	T	2.819e^-5	0.84	INTRON unc-13-4A
X	21948261	X_21948261_SNP [dm3] X_22546425_SNP [dm6]	A	C	2.849e^-5	0.84	UPSTREAM CG17601 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	18027440	2R_18027440_SNP [dm3] 2R_22139935_SNP [dm6]	A	G	2.948e^-5	0.84	UTR_5_PRIME gom DOWNSTREAM CG11269 INTRON a
3R	6046672	3R_6046672_SNP [dm3] 3R_10220950_SNP [dm6]	T	C	2.978e^-5	0.84	UTR_3_PRIME Syn
X	21946848	X_21946848_SNP [dm3] X_22545012_SNP [dm6]	G	A	2.988e^-5	0.84	UPSTREAM CG17599 INTERGENIC
3L	7280104	3L_7280104_SNP [dm3] 3L_7287004_SNP [dm6]	T	A	2.994e^-5	0.84	INTRON unc-13-4A
X	14080134	X_14080134_SNP [dm3] X_14186101_SNP [dm6]	T	A	3.151e^-5	0.84	DOWNSTREAM CG32603 INTERGENIC
3L	1514278	3L_1514278_SNP [dm3] 3L_1514278_SNP [dm6]	C	T	3.164e^-5	0.84	INTRON Psa & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	16159557	X_16159557_SNP [dm3] X_16265524_SNP [dm6]	G	A	3.175e^-5	0.84	SYNONYMOUS_CODING CG12507
X	6726368	X_6726368_SNP [dm3] X_6832335_SNP [dm6]	T	G	3.191e^-5	0.84	SYNONYMOUS_CODING CG12796 INTRON nonC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	21948260	X_21948260_SNP [dm3] X_22546424_SNP [dm6]	A	T	3.279e^-5	0.84	UPSTREAM CG17601 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	13693381	2R_13693381_SNP [dm3] 2R_17805876_SNP [dm6]	A	C	3.309e^-5	0.84	INTRON grh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sbb
3R	5696291	3R_5696291_SNP [dm3] 3R_9870569_SNP [dm6]	T	A	3.340e^-5	0.84	INTERGENIC
2L	8767254	2L_8767254_SNP [dm3] 2L_8767254_SNP [dm6]	G	A	3.349e^-5	0.84	SYNONYMOUS_CODING CG9463
2R	11101445	2R_11101445_SNP [dm3] 2R_15213940_SNP [dm6]	A	G	3.404e^-5	0.84	UPSTREAM row DOWNSTREAM CG8093 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	11101448	2R_11101448_SNP [dm3] 2R_15213943_SNP [dm6]	C	G	3.404e^-5	0.84	UPSTREAM row DOWNSTREAM CG8093 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	3547095	X_3547095_DEL [dm3] X_3653062_DEL [dm6]	TT	T	3.448e^-5	0.84	INTRON AstA-R1
2L	4546212	2L_4546212_SNP [dm3] 2L_4546212_SNP [dm6]	G	C	3.530e^-5	0.84	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12456233	2L_12456233_SNP [dm3] 2L_12456233_SNP [dm6]	A	T	3.535e^-5	0.84	UTR_3_PRIME bun DOWNSTREAM bun
2L	7352016	2L_7352016_SNP [dm3] 2L_7352016_SNP [dm6]	A	G	3.552e^-5	0.84	SYNONYMOUS_CODING Wnt6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	15489962	X_15489962_SNP [dm3] X_15595929_SNP [dm6]	A	C	3.628e^-5	0.84	INTERGENIC
3L	5588040	3L_5588040_SNP [dm3] 3L_5594940_SNP [dm6]	T	G	3.711e^-5	0.84	UPSTREAM CG5150 INTRON CG10592	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	18751046	2L_18751046_SNP [dm3] 2L_18751046_SNP [dm6]	T	A	3.729e^-5	0.84	INTERGENIC
2R	13250795	2R_13250795_SNP [dm3] 2R_17363290_SNP [dm6]	T	G	3.832e^-5	0.84	NON_SYNONYMOUS_CODING mbl INTRON mbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10704004	2R_10704004_SNP [dm3] 2R_14816499_SNP [dm6]	T	A	3.851e^-5	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	6102446	2L_6102446_SNP [dm3] 2L_6102446_SNP [dm6]	T	A	3.858e^-5	0.84	INTRON stai
2L	4811238	2L_4811238_SNP [dm3] 2L_4811238_SNP [dm6]	T	C	3.859e^-5	0.84	DOWNSTREAM CR45297 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	499820	3L_499820_SNP [dm3] 3L_499820_SNP [dm6]	G	T	3.872e^-5	0.84	DOWNSTREAM CG34267 INTRON klar
3L	490692	3L_490692_SNP [dm3] 3L_490692_SNP [dm6]	G	A	3.873e^-5	0.84	UTR_5_PRIME klar INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2L	6230080	2L_6230080_SNP [dm3] 2L_6230080_SNP [dm6]	T	A	3.902e^-5	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16333418	2L_16333418_SNP [dm3] 2L_16333418_SNP [dm6]	T	C	3.969e^-5	0.84	NON_SYNONYMOUS_CODING CG31817	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7635058	3R_7635058_SNP [dm3] 3R_11809336_SNP [dm6]	T	A	4.018e^-5	0.84	INTRON ClC-a	TF binding site mE1_TFBS_cad
X	16543776	X_16543776_INS [dm3] X_16649743_INS [dm6]	A	ACACCCATA	4.129e^-5	0.84	UTR_3_PRIME mthl1 DOWNSTREAM mthl1
3L	2052667	3L_2052667_SNP [dm3] 3L_2052667_SNP [dm6]	T	A	4.164e^-5	0.84	NON_SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_sens
2R	8925229	2R_8925229_SNP [dm3] 2R_13037724_SNP [dm6]	T	C	4.174e^-5	0.84	INTERGENIC
2L	5974817	2L_5974817_SNP [dm3] 2L_5974817_SNP [dm6]	G	C	4.216e^-5	0.84	INTRON chic
2R	9787599	2R_9787599_SNP [dm3] 2R_13900094_SNP [dm6]	T	C	4.266e^-5	0.84	INTRON shot
2L	9413990	2L_9413990_SNP [dm3] 2L_9413990_SNP [dm6]	G	T	4.418e^-5	0.84	INTRON Shawl
3L	3314946	3L_3314946_SNP [dm3] 3L_3314946_SNP [dm6]	T	C	4.438e^-5	0.84	UPSTREAM Drsl3 & 1 other DOWNSTREAM ZnT63C & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3604252	2L_3604252_SNP [dm3] 2L_3604252_SNP [dm6]	C	A	4.481e^-5	0.84	UTR_3_PRIME odd	TF binding site BDTNP1_TFBS_da
2L	6005978	2L_6005978_SNP [dm3] 2L_6005978_SNP [dm6]	A	G	4.575e^-5	0.84	SYNONYMOUS_CODING Gal EXON CR43866
3L	12316365	3L_12316365_DEL [dm3] 3L_12323265_DEL [dm6]	TG	T	4.610e^-5	0.84	INTERGENIC
2L	10847969	2L_10847969_SNP [dm3] 2L_10847969_SNP [dm6]	A	G	4.613e^-5	0.84	SYNONYMOUS_CODING porin UPSTREAM Porin2
X	16543809	X_16543809_SNP [dm3] X_16649776_SNP [dm6]	T	C	4.825e^-5	0.84	UTR_3_PRIME mthl1 DOWNSTREAM mthl1
2R	18707578	2R_18707578_SNP [dm3] 2R_22820073_SNP [dm6]	C	T	4.869e^-5	0.84	INTRON CG30271	TF binding site mE1_TFBS_chinmo
2L	4530745	2L_4530745_SNP [dm3] 2L_4530745_SNP [dm6]	A	T	4.869e^-5	0.84	INTRON dp
2R	13250753	2R_13250753_SNP [dm3] 2R_17363248_SNP [dm6]	A	G	4.934e^-5	0.84	SYNONYMOUS_CODING mbl INTRON mbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6965034	X_6965034_SNP [dm3] X_7071001_SNP [dm6]	A	C	5.050e^-5	0.84	INTRON CG4607
2R	6891937	2R_6891937_SNP [dm3] 2R_11004432_SNP [dm6]	T	C	5.103e^-5	0.84	INTRON luna
3L	7853841	3L_7853841_SNP [dm3] 3L_7860741_SNP [dm6]	C	A	5.110e^-5	0.84	INTRON Pdp1
3L	477181	3L_477181_SNP [dm3] 3L_477181_SNP [dm6]	T	C	5.122e^-5	0.84	INTRON klar
2L	1704761	2L_1704761_SNP [dm3] 2L_1704761_SNP [dm6]	C	T	5.136e^-5	0.84	UPSTREAM cpb DOWNSTREAM chinmo INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA
3R	12653069	3R_12653069_SNP [dm3] 3R_16827347_SNP [dm6]	G	A	5.167e^-5	0.84	SYNONYMOUS_CODING abd-A UTR_5_PRIME abd-A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11690681	2R_11690681_SNP [dm3] 2R_15803176_SNP [dm6]	G	T	5.171e^-5	0.84	INTRON Zasp52 & 1 other
2L	10847863	2L_10847863_SNP [dm3] 2L_10847863_SNP [dm6]	C	T	5.187e^-5	0.84	UTR_3_PRIME porin UPSTREAM Porin2
2L	4811089	2L_4811089_SNP [dm3] 2L_4811089_SNP [dm6]	T	A	5.236e^-5	0.84	DOWNSTREAM CR45297 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	469469	3L_469469_SNP [dm3] 3L_469469_SNP [dm6]	A	T	5.281e^-5	0.84	INTRON klar	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1196839	3L_1196839_SNP [dm3] 3L_1196839_SNP [dm6]	G	T	5.420e^-5	0.84	INTRON Aplip1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	20833102	3R_20833102_SNP [dm3] 3R_25007380_SNP [dm6]	C	A	5.440e^-5	0.84	INTRON tnc
2L	4811120	2L_4811120_SNP [dm3] 2L_4811120_SNP [dm6]	A	C	5.458e^-5	0.84	DOWNSTREAM CR45297 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	12315175	2L_12315175_SNP [dm3] 2L_12315175_SNP [dm6]	A	C	5.471e^-5	0.84	DOWNSTREAM CR45282 INTERGENIC
3R	18352604	3R_18352604_SNP [dm3] 3R_22526882_SNP [dm6]	G	A	5.556e^-5	0.84	UTR_5_PRIME CG5346	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	17922225	2R_17922225_SNP [dm3] 2R_22034720_SNP [dm6]	G	A	5.558e^-5	0.84	UPSTREAM CG9308 INTRON CG34370
X	8275217	X_8275217_SNP [dm3] X_8381184_SNP [dm6]	T	A	5.613e^-5	0.84	INTERGENIC
2R	13825625	2R_13825625_SNP [dm3] 2R_17938120_SNP [dm6]	T	G	5.698e^-5	0.84	INTERGENIC
2R	9495849	2R_9495849_SNP [dm3] 2R_13608344_SNP [dm6]	C	G	5.762e^-5	0.84	DOWNSTREAM CG12464 INTERGENIC
2L	12456282	2L_12456282_SNP [dm3] 2L_12456282_SNP [dm6]	G	A	5.792e^-5	0.84	UTR_3_PRIME bun DOWNSTREAM bun
3L	3098955	3L_3098955_SNP [dm3] 3L_3098955_SNP [dm6]	G	A	5.947e^-5	0.84	INTRON Cht7
3R	14537485	3R_14537485_SNP [dm3] 3R_18711763_SNP [dm6]	G	A	5.965e^-5	0.84	INTRON VAChT & 1 other
2R	9913951	2R_9913951_SNP [dm3] 2R_14026446_SNP [dm6]	T	A	5.971e^-5	0.84	INTRON mam
2R	12017714	2R_12017714_SNP [dm3] 2R_16130209_SNP [dm6]	T	A	6.016e^-5	0.84	INTRON spin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	6896980	2R_6896980_SNP [dm3] 2R_11009475_SNP [dm6]	A	G	6.136e^-5	0.84	INTRON luna	TF binding site mE1_TFBS_inv
2R	18027372	2R_18027372_SNP [dm3] 2R_22139867_SNP [dm6]	C	T	6.177e^-5	0.84	UPSTREAM gom DOWNSTREAM CG11269 INTRON a
2L	6937014	2L_6937014_SNP [dm3] 2L_6937014_SNP [dm6]	A	G	6.202e^-5	0.84	INTRON CG18304
2R	13250768	2R_13250768_SNP [dm3] 2R_17363263_SNP [dm6]	T	C	6.225e^-5	0.84	SYNONYMOUS_CODING mbl INTRON mbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9382663	3R_9382663_SNP [dm3] 3R_13556941_SNP [dm6]	A	G	6.298e^-5	0.84	INTERGENIC
3L	477095	3L_477095_SNP [dm3] 3L_477095_SNP [dm6]	A	T	6.338e^-5	0.84	INTRON klar
X	8274947	X_8274947_SNP [dm3] X_8380914_SNP [dm6]	T	C	6.411e^-5	0.84	INTERGENIC
2R	5385081	2R_5385081_SNP [dm3] 2R_9497576_SNP [dm6]	G	A	6.442e^-5	0.84	INTRON Wnt2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23416081	3R_23416081_SNP [dm3] 3R_27590359_SNP [dm6]	A	C	6.582e^-5	0.84	SYNONYMOUS_CODING CG5639	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	12319992	2L_12319992_SNP [dm3] 2L_12319992_SNP [dm6]	C	T	6.594e^-5	0.84	INTERGENIC
3R	23415787	3R_23415787_SNP [dm3] 3R_27590065_SNP [dm6]	A	G	6.635e^-5	0.84	SYNONYMOUS_CODING CG5639	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	18621928	X_18621928_SNP [dm3] X_18727895_SNP [dm6]	T	A	6.664e^-5	0.84	INTERGENIC
2L	4811131	2L_4811131_SNP [dm3] 2L_4811131_SNP [dm6]	G	C	6.689e^-5	0.84	DOWNSTREAM CR45297 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	13825616	2R_13825616_SNP [dm3] 2R_17938111_SNP [dm6]	A	G	6.716e^-5	0.84	INTERGENIC
2L	12454832	2L_12454832_SNP [dm3] 2L_12454832_SNP [dm6]	A	G	6.865e^-5	0.84	DOWNSTREAM bun EXON CR17024	TF binding site mE1_TFBS_sens
2L	12456219	2L_12456219_SNP [dm3] 2L_12456219_SNP [dm6]	T	G	6.897e^-5	0.84	UTR_3_PRIME bun DOWNSTREAM bun
3R	18395046	3R_18395046_SNP [dm3] 3R_22569324_SNP [dm6]	T	A	6.950e^-5	0.84	UPSTREAM CG33110 INTERGENIC	TF binding site mE1_TFBS_inv
X	11353354	X_11353354_DEL [dm3] X_11459321_DEL [dm6]	ACA	A	6.963e^-5	0.84	UPSTREAM CG43155 DOWNSTREAM HP5 INTERGENIC
3L	7853844	3L_7853844_SNP [dm3] 3L_7860744_SNP [dm6]	A	T	6.988e^-5	0.84	INTRON Pdp1
2R	8925239	2R_8925239_SNP [dm3] 2R_13037734_SNP [dm6]	G	A	7.000e^-5	0.84	INTERGENIC
X	8275199	X_8275199_SNP [dm3] X_8381166_SNP [dm6]	T	C	7.038e^-5	0.84	INTERGENIC
X	8275201	X_8275201_SNP [dm3] X_8381168_SNP [dm6]	A	C	7.038e^-5	0.84	INTERGENIC
2L	9192877	2L_9192877_SNP [dm3] 2L_9192877_SNP [dm6]	T	A	7.041e^-5	0.84	INTRON tai
2L	132312	2L_132312_SNP [dm3] 2L_132312_SNP [dm6]	T	G	7.081e^-5	0.84	UTR_5_PRIME Gs1 INTRON CG11455 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	15938787	2R_15938787_SNP [dm3] 2R_20051282_SNP [dm6]	A	G	7.131e^-5	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2110735	2L_2110735_SNP [dm3] 2L_2110735_SNP [dm6]	G	C	7.131e^-5	0.84	UPSTREAM dpr3 INTERGENIC	TF binding site mE1_TFBS_bab1
2L	13241028	2L_13241028_SNP [dm3] 2L_13241028_SNP [dm6]	A	G	7.317e^-5	0.84	UPSTREAM CR45330 INTRON CG5945	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7283401	3L_7283401_SNP [dm3] 3L_7290301_SNP [dm6]	T	A	7.319e^-5	0.84	INTRON unc-13-4A
2R	12275645	2R_12275645_SNP [dm3] 2R_16388140_SNP [dm6]	C	T	7.355e^-5	0.84	INTRON Sema-2b
2R	11618698	2R_11618698_SNP [dm3] 2R_15731193_SNP [dm6]	G	A	7.373e^-5	0.84	INTRON CG30089
3L	10534765	3L_10534765_SNP [dm3] 3L_10541665_SNP [dm6]	T	C	7.385e^-5	0.84	INTRON A2bp1
2R	14267563	2R_14267563_SNP [dm3] 2R_18380058_SNP [dm6]	G	C	7.402e^-5	0.84	INTERGENIC
3L	15663472	3L_15663472_SNP [dm3] 3L_15670372_SNP [dm6]	A	G	7.406e^-5	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	18395045	3R_18395045_SNP [dm3] 3R_22569323_SNP [dm6]	A	T	7.491e^-5	0.84	UPSTREAM CG33110 INTERGENIC	TF binding site mE1_TFBS_inv
2L	4811136	2L_4811136_SNP [dm3] 2L_4811136_SNP [dm6]	C	A	7.569e^-5	0.84	DOWNSTREAM CR45297 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	3349822	3L_3349822_SNP [dm3] 3L_3349822_SNP [dm6]	C	T	7.573e^-5	0.84	UPSTREAM kst INTRON kst	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	7332989	X_7332989_SNP [dm3] X_7438956_SNP [dm6]	A	G	7.626e^-5	0.84	INTERGENIC
3R	14537480	3R_14537480_SNP [dm3] 3R_18711758_SNP [dm6]	C	A	7.652e^-5	0.84	INTRON VAChT & 1 other
2L	5403099	2L_5403099_SNP [dm3] 2L_5403099_SNP [dm6]	A	T	7.699e^-5	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	5403108	2L_5403108_SNP [dm3] 2L_5403108_SNP [dm6]	C	A	7.699e^-5	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	3579562	2R_3579562_SNP [dm3] 2R_7692057_SNP [dm6]	G	T	7.703e^-5	0.84	INTRON CG1399	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7588311	X_7588311_SNP [dm3] X_7694278_SNP [dm6]	A	C	7.703e^-5	0.84	INTRON CHES-1-like	TF binding site mE1_TFBS_Trl
3R	25563247	3R_25563247_SNP [dm3] 3R_29737525_SNP [dm6]	T	C	7.773e^-5	0.84	UPSTREAM CG7601 & 1 other INTRON CG7598	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	12455410	2L_12455410_SNP [dm3] 2L_12455410_SNP [dm6]	A	C	7.793e^-5	0.84	DOWNSTREAM bun & 1 other INTERGENIC
2L	9111822	2L_9111822_SNP [dm3] 2L_9111822_SNP [dm6]	G	A	7.804e^-5	0.84	SYNONYMOUS_CODING Or30a
2R	13825629	2R_13825629_SNP [dm3] 2R_17938124_SNP [dm6]	A	G	7.955e^-5	0.84	INTERGENIC
3R	18395041	3R_18395041_SNP [dm3] 3R_22569319_SNP [dm6]	T	C	7.981e^-5	0.84	UPSTREAM CG33110 INTERGENIC	TF binding site mE1_TFBS_inv
3L	4663275	3L_4663275_SNP [dm3] 3L_4663275_SNP [dm6]	G	T	8.169e^-5	0.84	INTRON axo	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	4811217	2L_4811217_SNP [dm3] 2L_4811217_SNP [dm6]	G	A	8.203e^-5	0.84	DOWNSTREAM CR45297 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	7538135	2L_7538135_SNP [dm3] 2L_7538135_SNP [dm6]	G	A	8.207e^-5	0.84	INTRON RapGAP1	TF binding site mE1_TFBS_zfh1
2R	1995839	2R_1995839_SNP [dm3] 2R_6108334_SNP [dm6]	C	T	8.271e^-5	0.84	INTRON EcR
2L	13385589	2L_13385589_SNP [dm3] 2L_13385589_SNP [dm6]	G	T	8.313e^-5	0.84	UTR_3_PRIME loqs UPSTREAM CR44599 DOWNSTREAM CG9293
2R	10843505	2R_10843505_SNP [dm3] 2R_14956000_SNP [dm6]	T	A	8.417e^-5	0.84	INTRON aPKC
3L	4057703	3L_4057703_SNP [dm3] 3L_4057703_SNP [dm6]	G	T	8.478e^-5	0.84	SYNONYMOUS_CODING CG1136	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	17898302	2L_17898302_SNP [dm3] 2L_17898302_SNP [dm6]	G	C	8.478e^-5	0.84	INTERGENIC
2L	6230298	2L_6230298_SNP [dm3] 2L_6230298_SNP [dm6]	C	G	8.519e^-5	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8886414	2L_8886414_SNP [dm3] 2L_8886414_SNP [dm6]	A	G	8.592e^-5	0.84	DOWNSTREAM CR44415 INTERGENIC
2R	3579568	2R_3579568_SNP [dm3] 2R_7692063_SNP [dm6]	T	A	8.615e^-5	0.84	INTRON CG1399	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5801868	3R_5801868_SNP [dm3] 3R_9976146_SNP [dm6]	A	G	8.724e^-5	0.84	INTRON Glut4EF
2R	19355004	2R_19355004_SNP [dm3] 2R_23467481_SNP [dm6]	T	A	8.751e^-5	0.84	INTRON CG43795
3L	6075578	3L_6075578_DEL [dm3] 3L_6082478_DEL [dm6]	TT	T	8.769e^-5	0.84	UTR_3_PRIME CG6619 UPSTREAM CG13293 DOWNSTREAM CG6619	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3098260	3L_3098260_SNP [dm3] 3L_3098260_SNP [dm6]	T	A	8.825e^-5	0.84	DOWNSTREAM tRNA:CR32286 INTRON Cht7
2L	4743565	2L_4743565_SNP [dm3] 2L_4743565_SNP [dm6]	C	G	8.994e^-5	0.84	INTRON CG15630
2L	17028453	2L_17028453_SNP [dm3] 2L_17028453_SNP [dm6]	A	G	9.026e^-5	0.84	INTERGENIC
3R	19151992	3R_19151992_SNP [dm3] 3R_23326270_SNP [dm6]	G	A	9.064e^-5	0.84	INTRON pnt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	13291853	3R_13291853_DEL [dm3] 3R_17466131_DEL [dm6]	CGA	G	9.070e^-5	0.84	INTERGENIC
3L	10534388	3L_10534388_SNP [dm3] 3L_10541288_SNP [dm6]	G	C	9.110e^-5	0.84	INTRON A2bp1
2L	4493905	2L_4493905_SNP [dm3] 2L_4493905_SNP [dm6]	A	T	9.174e^-5	0.84	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2R	9869322	2R_9869322_SNP [dm3] 2R_13981817_SNP [dm6]	A	G	9.313e^-5	0.84	SYNONYMOUS_CODING Ctf4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15034467	3R_15034467_SNP [dm3] 3R_19208745_SNP [dm6]	A	T	9.317e^-5	0.84	INTERGENIC
2R	3579570	2R_3579570_DEL [dm3] 2R_7692065_DEL [dm6]	TTCAAATTGCTTTTGGGTTT...	T	9.401e^-5	0.84	INTRON CG1399	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12318943	2L_12318943_SNP [dm3] 2L_12318943_SNP [dm6]	G	C	9.471e^-5	0.84	INTERGENIC
2L	9279998	2L_9279998_SNP [dm3] 2L_9279998_SNP [dm6]	G	T	9.489e^-5	0.84	INTRON Ggamma30A
2R	10325485	2R_10325485_SNP [dm3] 2R_14437980_SNP [dm6]	T	C	9.630e^-5	0.84	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14754560	2L_14754560_SNP [dm3] 2L_14754560_SNP [dm6]	C	T	9.664e^-5	0.84	INTERGENIC
2L	13443645	2L_13443645_SNP [dm3] 2L_13443645_SNP [dm6]	T	G	9.785e^-5	0.84	DOWNSTREAM CG9267 INTRON CG42784	TF binding site mE1_TFBS_cad
3R	26599159	3R_26599159_SNP [dm3] 3R_30773437_SNP [dm6]	C	T	9.823e^-5	0.84	INTRON zfh1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	6800253	2R_6800253_SNP [dm3] 2R_10912748_SNP [dm6]	G	A	9.825e^-5	0.84	INTERGENIC
2R	18541342	2R_18541342_SNP [dm3] 2R_22653837_SNP [dm6]	T	A	9.838e^-5	0.84	SYNONYMOUS_CODING Cyp6d2 DOWNSTREAM nsr & 1 other
2L	21333250	2L_21333250_SNP [dm3] 2L_21333250_SNP [dm6]	G	T	9.866e^-5	0.84	INTRON dimm	TF binding site mE1_TFBS_inv
3L	3879576	3L_3879576_SNP [dm3] 3L_3879576_SNP [dm6]	G	T	9.869e^-5	0.84	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	10596241	3L_10596241_SNP [dm3] 3L_10603141_SNP [dm6]	C	T	9.890e^-5	0.84	INTERGENIC
2L	19418667	2L_19418667_SNP [dm3] 2L_19418667_SNP [dm6]	C	T	9.983e^-5	0.84	SYNONYMOUS_CODING lectin-37Da UPSTREAM lectin-37Db DOWNSTREAM Lectin-galC1 INTRON Pax
3L	12756632	3L_12756632_SNP [dm3] 3L_12763532_SNP [dm6]	A	T	1.007e^-4	0.84	NON_SYNONYMOUS_CODING CG32113	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	132010	2L_132010_SNP [dm3] 2L_132010_SNP [dm6]	A	C	1.014e^-4	0.84	UPSTREAM Gs1 INTRON CG11455	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2L	12442994	2L_12442994_SNP [dm3] 2L_12442994_SNP [dm6]	A	T	1.024e^-4	0.84	INTRON Oatp33Ea
2L	5532334	2L_5532334_SNP [dm3] 2L_5532334_SNP [dm6]	T	A	1.024e^-4	0.84	UPSTREAM CG7277 INTRON Cap-D3	TF binding site mE1_TFBS_cad
2R	10325437	2R_10325437_SNP [dm3] 2R_14437932_SNP [dm6]	C	T	1.047e^-4	0.84	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14941945	3L_14941945_SNP [dm3] 3L_14948845_SNP [dm6]	G	A	1.048e^-4	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	8333261	2R_8333261_SNP [dm3] 2R_12445756_SNP [dm6]	T	A	1.051e^-4	0.84	INTRON Dyb
3L	3314910	3L_3314910_INS [dm3] 3L_3314910_INS [dm6]	T	TT	1.061e^-4	0.84	UPSTREAM Drsl3 & 1 other DOWNSTREAM ZnT63C & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	9501103	3R_9501103_SNP [dm3] 3R_13675381_SNP [dm6]	A	G	1.067e^-4	0.84	UTR_3_PRIME CG9588 UPSTREAM Task6	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
X	11353588	X_11353588_SNP [dm3] X_11459555_SNP [dm6]	G	A	1.075e^-4	0.84	UPSTREAM CG43155 DOWNSTREAM HP5 INTERGENIC
3R	7635391	3R_7635391_SNP [dm3] 3R_11809669_SNP [dm6]	T	C	1.075e^-4	0.84	INTRON ClC-a	TF binding site mE1_TFBS_cad
2L	12455494	2L_12455494_SNP [dm3] 2L_12455494_SNP [dm6]	C	A	1.087e^-4	0.84	DOWNSTREAM bun & 1 other INTERGENIC
X	18372917	X_18372917_SNP [dm3] X_18478884_SNP [dm6]	G	A	1.089e^-4	0.84	INTRON CG32547
2L	13886521	2L_13886521_SNP [dm3] 2L_13886521_SNP [dm6]	G	T	1.090e^-4	0.84	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2L	8145021	2L_8145021_SNP [dm3] 2L_8145021_SNP [dm6]	A	G	1.092e^-4	0.84	UPSTREAM CG42762 & 1 other INTRON CG8552 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	5385022	2R_5385022_SNP [dm3] 2R_9497517_SNP [dm6]	T	C	1.093e^-4	0.84	INTRON Wnt2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	494706	3L_494706_SNP [dm3] 3L_494706_SNP [dm6]	A	C	1.097e^-4	0.84	INTRON klar
2R	13250762	2R_13250762_SNP [dm3] 2R_17363257_SNP [dm6]	G	T	1.100e^-4	0.84	SYNONYMOUS_CODING mbl INTRON mbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9430623	2L_9430623_SNP [dm3] 2L_9430623_SNP [dm6]	T	C	1.109e^-4	0.84	UPSTREAM FucTB & 1 other INTRON FucTB
3L	7853679	3L_7853679_SNP [dm3] 3L_7860579_SNP [dm6]	A	T	1.121e^-4	0.84	INTRON Pdp1
X	11205139	X_11205139_SNP [dm3] X_11311106_SNP [dm6]	G	T	1.122e^-4	0.84	NON_SYNONYMOUS_CODING Ir10a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17132694	2L_17132694_SNP [dm3] 2L_17132694_SNP [dm6]	G	A	1.124e^-4	0.84	INTRON beat-IIIa & 1 other
3L	11949031	3L_11949031_SNP [dm3] 3L_11955931_SNP [dm6]	T	C	1.126e^-4	0.84	NON_SYNONYMOUS_CODING CG7248 DOWNSTREAM CG11570
3L	11949102	3L_11949102_SNP [dm3] 3L_11956002_SNP [dm6]	C	T	1.126e^-4	0.84	SYNONYMOUS_CODING CG7248 DOWNSTREAM CG11570
2L	9840260	2L_9840260_SNP [dm3] 2L_9840260_SNP [dm6]	C	T	1.127e^-4	0.84	INTRON nAChRalpha6
2L	19312957	2L_19312957_SNP [dm3] 2L_19312957_SNP [dm6]	A	G	1.130e^-4	0.84	INTERGENIC	TF binding site mE1_TFBS_cad
2L	10471067	2L_10471067_SNP [dm3] 2L_10471067_SNP [dm6]	A	T	1.136e^-4	0.84	INTRON RluA-1
2L	6112781	2L_6112781_SNP [dm3] 2L_6112781_SNP [dm6]	T	A	1.136e^-4	0.84	INTRON stai
2L	12600870	2L_12600870_SNP [dm3] 2L_12600870_SNP [dm6]	C	G	1.136e^-4	0.84	INTRON nub
3R	20833289	3R_20833289_SNP [dm3] 3R_25007567_SNP [dm6]	G	A	1.137e^-4	0.84	INTRON tnc
X	2382579	X_2382579_SNP [dm3] X_2488546_SNP [dm6]	A	G	1.144e^-4	0.84	SYNONYMOUS_CODING trol	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11474616	2R_11474616_DEL [dm3] 2R_15587111_DEL [dm6]	GT	G	1.148e^-4	0.84	INTERGENIC
3L	4143386	3L_4143386_SNP [dm3] 3L_4143386_SNP [dm6]	C	T	1.160e^-4	0.84	SYNONYMOUS_CODING CG32260 INTRON CG32260
3L	953484	3L_953484_SNP [dm3] 3L_953484_SNP [dm6]	A	G	1.163e^-4	0.84	INTRON Glut1
3R	8623345	3R_8623345_SNP [dm3] 3R_12797623_SNP [dm6]	C	A	1.172e^-4	0.84	INTERGENIC
X	10810212	X_10810212_DEL [dm3] X_10916179_DEL [dm6]	TCTACTAATAT...	C	1.178e^-4	0.84	INTRON CG43901	TF binding site mE1_TFBS_chinmo
3L	562963	3L_562963_SNP [dm3] 3L_562963_SNP [dm6]	G	T	1.179e^-4	0.84	INTRON hipk
3L	10595547	3L_10595547_INS [dm3] 3L_10602447_INS [dm6]	G	GACTTGG	1.180e^-4	0.84	INTERGENIC
3R	7708104	3R_7708104_SNP [dm3] 3R_11882382_SNP [dm6]	C	T	1.182e^-4	0.84	UPSTREAM CG31368 INTRON CG6962	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	7853667	3L_7853667_SNP [dm3] 3L_7860567_SNP [dm6]	C	A	1.186e^-4	0.84	INTRON Pdp1
X	14923599	X_14923599_SNP [dm3] X_15029566_SNP [dm6]	C	A	1.190e^-4	0.84	INTRON hiw & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	2533904	3L_2533904_DEL [dm3] 3L_2533904_DEL [dm6]	TCCC	G	1.196e^-4	0.84	INTRON Spn
3L	2533909	3L_2533909_SNP [dm3] 3L_2533909_SNP [dm6]	T	A	1.196e^-4	0.84	INTRON Spn
3L	2533911	3L_2533911_SNP [dm3] 3L_2533911_SNP [dm6]	A	T	1.196e^-4	0.84	INTRON Spn
3L	953414	3L_953414_SNP [dm3] 3L_953414_SNP [dm6]	T	C	1.200e^-4	0.84	INTRON Glut1
2R	17095599	2R_17095599_INS [dm3] 2R_21208094_INS [dm6]	G	GCA	1.203e^-4	0.84	INTRON CG44245 & 1 other
2L	12455835	2L_12455835_SNP [dm3] 2L_12455835_SNP [dm6]	T	C	1.203e^-4	0.84	UTR_3_PRIME bun DOWNSTREAM CR17024 & 1 other
X	21283788	X_21283788_SNP [dm3] X_21412761_SNP [dm6]	G	A	1.204e^-4	0.84	INTERGENIC
X	3547110	X_3547110_SNP [dm3] X_3653077_SNP [dm6]	A	G	1.205e^-4	0.84	INTRON AstA-R1
3R	8623344	3R_8623344_SNP [dm3] 3R_12797622_SNP [dm6]	T	C	1.208e^-4	0.84	INTERGENIC
3L	6846980	3L_6846980_SNP [dm3] 3L_6853880_SNP [dm6]	T	C	1.217e^-4	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	20430394	X_20430394_SNP [dm3] X_20559367_SNP [dm6]	C	A	1.219e^-4	0.84	INTRON RunxB
3L	3098453	3L_3098453_SNP [dm3] 3L_3098453_SNP [dm6]	A	C	1.230e^-4	0.84	DOWNSTREAM tRNA:CR32286 INTRON Cht7
2R	8925194	2R_8925194_SNP [dm3] 2R_13037689_SNP [dm6]	G	T	1.247e^-4	0.84	INTERGENIC
2R	17296045	2R_17296045_SNP [dm3] 2R_21408540_SNP [dm6]	C	G	1.253e^-4	0.84	INTRON Sdc
X	21283494	X_21283494_SNP [dm3] X_21412467_SNP [dm6]	T	C	1.255e^-4	0.84	INTERGENIC
2L	8137567	2L_8137567_SNP [dm3] 2L_8137567_SNP [dm6]	G	A	1.255e^-4	0.84	SYNONYMOUS_CODING CG8552 UTR_5_PRIME CG8552	TF binding site mE1_TFBS_cad
2R	9411417	2R_9411417_SNP [dm3] 2R_13523912_SNP [dm6]	C	T	1.259e^-4	0.84	DOWNSTREAM CG13331 INTRON Vmat
3L	11892854	3L_11892854_SNP [dm3] 3L_11899754_SNP [dm6]	A	G	1.261e^-4	0.84	INTRON CG44837 & 1 other
3L	8213329	3L_8213329_SNP [dm3] 3L_8220229_SNP [dm6]	A	T	1.274e^-4	0.84	INTERGENIC
3L	3572735	3L_3572735_INS [dm3] 3L_3572735_INS [dm6]	A	CACAGTTC	1.286e^-4	0.84	INTRON Eip63E
3L	13366410	3L_13366410_SNP [dm3] 3L_13373310_SNP [dm6]	A	T	1.286e^-4	0.84	INTERGENIC
X	20215638	X_20215638_SNP [dm3] X_20344611_SNP [dm6]	G	A	1.290e^-4	0.84	INTERGENIC
2R	10268936	2R_10268936_SNP [dm3] 2R_14381431_SNP [dm6]	A	G	1.294e^-4	0.84	INTRON Dh44-R1
2R	11002484	2R_11002484_SNP [dm3] 2R_15114979_SNP [dm6]	A	T	1.298e^-4	0.84	UPSTREAM chn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2R	775588	2R_775588_SNP [dm3] 2R_4888083_SNP [dm6]	G	T	1.298e^-4	0.84	INTERGENIC	transposable element FlyBase
3L	10596974	3L_10596974_SNP [dm3] 3L_10603874_SNP [dm6]	A	G	1.304e^-4	0.84	INTERGENIC
X	11353543	X_11353543_SNP [dm3] X_11459510_SNP [dm6]	C	G	1.312e^-4	0.84	UPSTREAM CG43155 DOWNSTREAM HP5 INTERGENIC
3R	9226136	3R_9226136_DEL [dm3] 3R_13400414_DEL [dm6]	TTAGTTAT	T	1.320e^-4	0.84	INTRON CG9796
2L	2552560	2L_2552560_SNP [dm3] 2L_2552560_SNP [dm6]	G	A	1.323e^-4	0.84	SYNONYMOUS_CODING CG3515
3L	897020	3L_897020_SNP [dm3] 3L_897020_SNP [dm6]	A	T	1.327e^-4	0.84	UPSTREAM CG34057 INTRON CG34056
2L	6714476	2L_6714476_SNP [dm3] 2L_6714476_SNP [dm6]	G	A	1.329e^-4	0.84	INTRON AkhR
2L	17894789	2L_17894789_SNP [dm3] 2L_17894789_SNP [dm6]	T	C	1.331e^-4	0.84	DOWNSTREAM CR43420 INTERGENIC
X	21283809	X_21283809_SNP [dm3] X_21412782_SNP [dm6]	G	A	1.332e^-4	0.84	INTERGENIC
3R	5801869	3R_5801869_INS [dm3] 3R_9976147_INS [dm6]	T	TGTCTGTGTGTATCTG...	1.333e^-4	0.84	INTRON Glut4EF
2R	15367713	2R_15367713_SNP [dm3] 2R_19480208_SNP [dm6]	T	A	1.333e^-4	0.84	INTRON par-1
2L	12447647	2L_12447647_SNP [dm3] 2L_12447647_SNP [dm6]	C	T	1.335e^-4	0.84	SYNONYMOUS_CODING CG5421 UPSTREAM Oatp33Eb
3L	2559109	3L_2559109_SNP [dm3] 3L_2559109_SNP [dm6]	C	T	1.336e^-4	0.84	INTRON msn
2R	14498039	2R_14498039_SNP [dm3] 2R_18610534_SNP [dm6]	T	C	1.342e^-4	0.84	INTRON GEFmeso
X	18372918	X_18372918_SNP [dm3] X_18478885_SNP [dm6]	C	T	1.343e^-4	0.84	INTRON CG32547
2R	18498535	2R_18498535_SNP [dm3] 2R_22611030_SNP [dm6]	G	T	1.345e^-4	0.84	SYNONYMOUS_CODING CG4329	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	1995869	2R_1995869_SNP [dm3] 2R_6108364_SNP [dm6]	C	T	1.345e^-4	0.84	INTRON EcR
2L	5491934	2L_5491934_SNP [dm3] 2L_5491934_SNP [dm6]	G	T	1.358e^-4	0.84	INTERGENIC
X	21946825	X_21946825_INS [dm3] X_22544989_INS [dm6]	G	GG	1.363e^-4	0.84	UPSTREAM CG17599 INTERGENIC
2R	10312367	2R_10312367_SNP [dm3] 2R_14424862_SNP [dm6]	A	G	1.370e^-4	0.84	DOWNSTREAM CG17386 INTERGENIC
2L	10820261	2L_10820261_SNP [dm3] 2L_10820261_SNP [dm6]	A	T	1.372e^-4	0.84	NON_SYNONYMOUS_CODING CG6508 UPSTREAM CG17134 INTRON Nos	TF binding site mE1_TFBS_cad
2R	13825643	2R_13825643_SNP [dm3] 2R_17938138_SNP [dm6]	T	G	1.373e^-4	0.84	INTERGENIC
2R	15137726	2R_15137726_SNP [dm3] 2R_19250221_SNP [dm6]	A	T	1.389e^-4	0.84	DOWNSTREAM CG33454 INTRON wbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_z mE1_TFBS_Trl
2R	10887017	2R_10887017_SNP [dm3] 2R_14999512_SNP [dm6]	G	A	1.400e^-4	0.84	INTERGENIC
3L	3314731	3L_3314731_SNP [dm3] 3L_3314731_SNP [dm6]	G	A	1.414e^-4	0.84	UPSTREAM Drsl3 & 1 other DOWNSTREAM ZnT63C & 1 other INTERGENIC
X	11353562	X_11353562_DEL [dm3] X_11459529_DEL [dm6]	GG	G	1.423e^-4	0.84	UPSTREAM CG43155 DOWNSTREAM HP5 INTERGENIC
2L	18376189	2L_18376189_SNP [dm3] 2L_18376189_SNP [dm6]	G	A	1.423e^-4	0.84	INTRON Fas3
3R	19627264	3R_19627264_SNP [dm3] 3R_23801542_SNP [dm6]	T	C	1.427e^-4	0.84	UTR_3_PRIME mbc DOWNSTREAM CG33111
3L	18934330	3L_18934330_DEL [dm3] 3L_18941230_DEL [dm6]	TGGAATTTCGGCAACAAAAT...	T	1.428e^-4	0.84	INTRON CG32204
3L	3099166	3L_3099166_SNP [dm3] 3L_3099166_SNP [dm6]	C	T	1.434e^-4	0.84	INTRON Cht7
2L	6936791	2L_6936791_SNP [dm3] 2L_6936791_SNP [dm6]	A	G	1.441e^-4	0.84	INTRON CG18304
3R	13838138	3R_13838138_SNP [dm3] 3R_18012416_SNP [dm6]	A	C	1.443e^-4	0.84	INTRON cpo
X	7978076	X_7978076_DEL [dm3] X_8084043_DEL [dm6]	TT	T	1.448e^-4	0.84	UTR_3_PRIME CG2256 UPSTREAM CR45535
2R	18707383	2R_18707383_SNP [dm3] 2R_22819878_SNP [dm6]	C	T	1.454e^-4	0.84	SYNONYMOUS_CODING CG30271	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6040376	2R_6040376_SNP [dm3] 2R_10152871_SNP [dm6]	C	A	1.455e^-4	0.84	SPLICE_SITE_REGION CR45133 UPSTREAM CR45133 INTRON KCNQ & 1 other
2R	11101493	2R_11101493_SNP [dm3] 2R_15213988_SNP [dm6]	T	A	1.461e^-4	0.84	UPSTREAM row DOWNSTREAM CG8093 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	13825642	2R_13825642_SNP [dm3] 2R_17938137_SNP [dm6]	A	G	1.471e^-4	0.84	INTERGENIC
3L	6068385	3L_6068385_SNP [dm3] 3L_6075285_SNP [dm6]	G	C	1.474e^-4	0.84	UPSTREAM CG6610 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
3L	3569385	3L_3569385_SNP [dm3] 3L_3569385_SNP [dm6]	T	C	1.476e^-4	0.84	INTRON Eip63E	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	9771744	2R_9771744_SNP [dm3] 2R_13884239_SNP [dm6]	T	C	1.483e^-4	0.84	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4546219	2L_4546219_SNP [dm3] 2L_4546219_SNP [dm6]	G	T	1.488e^-4	0.84	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9473164	2R_9473164_SNP [dm3] 2R_13585659_SNP [dm6]	G	A	1.489e^-4	0.84	INTRON CG6191 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_ttk mE1_TFBS_zfh1
3L	3309385	3L_3309385_INS [dm3] 3L_3309385_INS [dm6]	T	TT	1.492e^-4	0.84	UPSTREAM ZnT63C INTRON ZnT63C
X	9127806	X_9127806_SNP [dm3] X_9233773_SNP [dm6]	T	G	1.495e^-4	0.84	SYNONYMOUS_CODING Ir8a	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	19596574	3R_19596574_SNP [dm3] 3R_23770852_SNP [dm6]	C	G	1.504e^-4	0.84	SYNONYMOUS_CODING tst
3R	13838133	3R_13838133_SNP [dm3] 3R_18012411_SNP [dm6]	A	G	1.506e^-4	0.84	INTRON cpo
2R	15138449	2R_15138449_SNP [dm3] 2R_19250944_SNP [dm6]	C	G	1.513e^-4	0.84	DOWNSTREAM CG33454 & 1 other INTERGENIC
3L	516204	3L_516204_SNP [dm3] 3L_516204_SNP [dm6]	A	T	1.514e^-4	0.84	INTRON klar
2L	21333253	2L_21333253_SNP [dm3] 2L_21333253_SNP [dm6]	A	C	1.520e^-4	0.84	INTRON dimm	TF binding site mE1_TFBS_inv
2L	19312937	2L_19312937_SNP [dm3] 2L_19312937_SNP [dm6]	A	G	1.521e^-4	0.84	INTERGENIC	TF binding site mE1_TFBS_cad
2R	2587020	2R_2587020_SNP [dm3] 2R_6699515_SNP [dm6]	T	C	1.530e^-4	0.84	DOWNSTREAM CG3409 & 2 others INTERGENIC
3R	23887307	3R_23887307_SNP [dm3] 3R_28061585_SNP [dm6]	T	C	1.534e^-4	0.84	INTRON CG34362
2R	9685554	2R_9685554_SNP [dm3] 2R_13798049_SNP [dm6]	T	A	1.535e^-4	0.84	INTRON Cpr50Cb
X	5267036	X_5267036_SNP [dm3] X_5373003_SNP [dm6]	C	G	1.541e^-4	0.84	INTRON SK
2L	17898294	2L_17898294_SNP [dm3] 2L_17898294_SNP [dm6]	T	C	1.547e^-4	0.84	INTERGENIC
X	9934997	X_9934997_SNP [dm3] X_10040964_SNP [dm6]	A	G	1.558e^-4	0.84	SYNONYMOUS_CODING Cht6 INTRON Cht6
2L	10820277	2L_10820277_SNP [dm3] 2L_10820277_SNP [dm6]	A	G	1.558e^-4	0.84	SYNONYMOUS_CODING CG6508 UPSTREAM CG17134 INTRON Nos	TF binding site mE1_TFBS_cad
3R	13838144	3R_13838144_SNP [dm3] 3R_18012422_SNP [dm6]	G	A	1.563e^-4	0.84	INTRON cpo
2L	10169282	2L_10169282_SNP [dm3] 2L_10169282_SNP [dm6]	G	T	1.567e^-4	0.84	INTRON CG44153
3L	18279426	3L_18279426_SNP [dm3] 3L_18286326_SNP [dm6]	T	C	1.567e^-4	0.84	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	9126655	2L_9126655_SNP [dm3] 2L_9126655_SNP [dm6]	A	G	1.572e^-4	0.84	INTRON CG32982	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr
2L	6197565	2L_6197565_SNP [dm3] 2L_6197565_SNP [dm6]	C	T	1.577e^-4	0.84	INTRON CG34380	TF binding site BDTNP1_TFBS_twi
2L	12455229	2L_12455229_SNP [dm3] 2L_12455229_SNP [dm6]	C	A	1.592e^-4	0.84	DOWNSTREAM bun & 1 other INTERGENIC
2L	9680121	2L_9680121_SNP [dm3] 2L_9680121_SNP [dm6]	T	A	1.593e^-4	0.84	INTERGENIC
2R	3579565	2R_3579565_SNP [dm3] 2R_7692060_SNP [dm6]	C	A	1.597e^-4	0.84	INTRON CG1399	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4811104	2L_4811104_SNP [dm3] 2L_4811104_SNP [dm6]	G	C	1.601e^-4	0.84	DOWNSTREAM CR45297 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	9040075	2L_9040075_SNP [dm3] 2L_9040075_SNP [dm6]	G	A	1.602e^-4	0.84	INTERGENIC
3L	4057844	3L_4057844_SNP [dm3] 3L_4057844_SNP [dm6]	T	C	1.604e^-4	0.84	SYNONYMOUS_CODING CG1136	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18788091	2R_18788091_SNP [dm3] 2R_22900568_SNP [dm6]	G	T	1.606e^-4	0.84	INTRON nahoda
2R	13408133	2R_13408133_SNP [dm3] 2R_17520628_SNP [dm6]	G	T	1.614e^-4	0.84	INTRON Patronin	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12455201	2L_12455201_SNP [dm3] 2L_12455201_SNP [dm6]	G	A	1.621e^-4	0.84	DOWNSTREAM bun & 1 other INTERGENIC
3L	18947121	3L_18947121_SNP [dm3] 3L_18954021_SNP [dm6]	A	G	1.621e^-4	0.84	INTRON CG6836
2L	12715264	2L_12715264_SNP [dm3] 2L_12715264_SNP [dm6]	G	C	1.621e^-4	0.84	NON_SYNONYMOUS_CODING CG5792 INTRON CG5792
3L	10595545	3L_10595545_SNP [dm3] 3L_10602445_SNP [dm6]	A	T	1.622e^-4	0.84	INTERGENIC
2L	5403133	2L_5403133_SNP [dm3] 2L_5403133_SNP [dm6]	A	G	1.629e^-4	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	6956705	2R_6956705_SNP [dm3] 2R_11069200_SNP [dm6]	T	A	1.638e^-4	0.84	INTRON luna
2R	13657713	2R_13657713_INS [dm3] 2R_17770208_INS [dm6]	A	ATGTA	1.645e^-4	0.84	UPSTREAM CG18635 DOWNSTREAM CG6362 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	7588066	X_7588066_SNP [dm3] X_7694033_SNP [dm6]	A	G	1.646e^-4	0.84	INTRON CHES-1-like	TF binding site mE1_TFBS_Trl
X	21283505	X_21283505_DEL [dm3] X_21412478_DEL [dm6]	TATCAGTCCTTTAAATTGTT...	A	1.652e^-4	0.84	INTERGENIC
3L	1282724	3L_1282724_SNP [dm3] 3L_1282724_SNP [dm6]	A	G	1.654e^-4	0.84	INTRON CG32333
2L	12455452	2L_12455452_DEL [dm3] 2L_12455452_DEL [dm6]	TTTTAAAGTAT...	A	1.663e^-4	0.84	DOWNSTREAM bun & 1 other INTERGENIC
2L	14616022	2L_14616022_SNP [dm3] 2L_14616022_SNP [dm6]	A	T	1.668e^-4	0.84	UPSTREAM Adhr & 1 other INTRON osp & 2 others	TF binding site mE1_TFBS_cad
X	18994687	X_18994687_SNP [dm3] X_19100654_SNP [dm6]	T	G	1.672e^-4	0.84	INTERGENIC
X	10110413	X_10110413_SNP [dm3] X_10216380_SNP [dm6]	A	G	1.681e^-4	0.84	UTR_3_PRIME l_1_G0230 INTRON CG2962
3R	18393503	3R_18393503_SNP [dm3] 3R_22567781_SNP [dm6]	T	A	1.687e^-4	0.84	INTERGENIC
2R	17108158	2R_17108158_SNP [dm3] 2R_21220653_SNP [dm6]	G	A	1.688e^-4	0.84	SYNONYMOUS_CODING ASPP	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6234638	2L_6234638_SNP [dm3] 2L_6234638_SNP [dm6]	C	A	1.690e^-4	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	483650	3L_483650_SNP [dm3] 3L_483650_SNP [dm6]	G	T	1.711e^-4	0.84	INTRON klar
3L	22126761	3L_22126761_SNP [dm3] 3L_22133661_SNP [dm6]	G	T	1.711e^-4	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	8791297	X_8791297_SNP [dm3] X_8897264_SNP [dm6]	G	A	1.714e^-4	0.84	INTRON Moe	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	9756805	2R_9756805_SNP [dm3] 2R_13869300_SNP [dm6]	T	C	1.722e^-4	0.84	INTRON shot
2L	12455372	2L_12455372_SNP [dm3] 2L_12455372_SNP [dm6]	T	A	1.731e^-4	0.84	DOWNSTREAM bun & 1 other INTERGENIC
3L	7283169	3L_7283169_SNP [dm3] 3L_7290069_SNP [dm6]	G	T	1.733e^-4	0.84	INTRON unc-13-4A
X	18372916	X_18372916_INS [dm3] X_18478883_INS [dm6]	A	AATACGGA	1.752e^-4	0.84	INTRON CG32547
3L	3975209	3L_3975209_SNP [dm3] 3L_3975209_SNP [dm6]	T	C	1.757e^-4	0.84	INTERGENIC	regulatory region REDfly_CRMs
X	14666137	X_14666137_INS [dm3] X_14772104_INS [dm6]	T	TCAGTT	1.758e^-4	0.84	INTERGENIC
3L	10596973	3L_10596973_SNP [dm3] 3L_10603873_SNP [dm6]	C	A	1.759e^-4	0.84	INTERGENIC
3R	6344955	3R_6344955_SNP [dm3] 3R_10519233_SNP [dm6]	G	C	1.759e^-4	0.84	INTRON hth
3R	19627084	3R_19627084_SNP [dm3] 3R_23801362_SNP [dm6]	T	C	1.764e^-4	0.84	UTR_3_PRIME mbc DOWNSTREAM CG33111
3L	7853622	3L_7853622_SNP [dm3] 3L_7860522_SNP [dm6]	G	C	1.764e^-4	0.84	INTRON Pdp1
3L	7111439	3L_7111439_SNP [dm3] 3L_7118339_SNP [dm6]	C	T	1.767e^-4	0.84	SYNONYMOUS_CODING form3	TF binding site mE1_TFBS_chinmo
2R	8925195	2R_8925195_SNP [dm3] 2R_13037690_SNP [dm6]	A	T	1.773e^-4	0.84	INTERGENIC
2R	8925197	2R_8925197_SNP [dm3] 2R_13037692_SNP [dm6]	A	T	1.785e^-4	0.84	INTERGENIC
2R	16978020	2R_16978020_SNP [dm3] 2R_21090515_SNP [dm6]	T	A	1.785e^-4	0.84	NON_SYNONYMOUS_CODING Rbpn-5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	14415676	3L_14415676_SNP [dm3] 3L_14422576_SNP [dm6]	G	T	1.796e^-4	0.84	INTRON bbg	TF binding site mE1_TFBS_HSA
2R	4128528	2R_4128528_SNP [dm3] 2R_8241023_SNP [dm6]	T	C	1.800e^-4	0.84	DOWNSTREAM pnut & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	20531954	X_20531954_SNP [dm3] X_20660927_SNP [dm6]	G	A	1.805e^-4	0.84	UPSTREAM CG1835 INTRON Cyp6v1	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
2R	16498085	2R_16498085_SNP [dm3] 2R_20610580_SNP [dm6]	G	A	1.806e^-4	0.84	INTRON Hil
3L	12756562	3L_12756562_SNP [dm3] 3L_12763462_SNP [dm6]	A	G	1.810e^-4	0.84	SYNONYMOUS_CODING CG32113	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	775577	2R_775577_SNP [dm3] 2R_4888072_SNP [dm6]	G	A	1.822e^-4	0.84	INTERGENIC	transposable element FlyBase
2L	12443130	2L_12443130_SNP [dm3] 2L_12443130_SNP [dm6]	G	A	1.833e^-4	0.84	SYNONYMOUS_CODING Oatp33Ea
3L	6068935	3L_6068935_SNP [dm3] 3L_6075835_SNP [dm6]	T	C	1.839e^-4	0.84	SYNONYMOUS_CODING CG6610 UPSTREAM CG13295 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	16269957	2R_16269957_SNP [dm3] 2R_20382452_SNP [dm6]	A	T	1.841e^-4	0.84	INTERGENIC
3R	3946560	3R_3946560_INS [dm3] 3R_8120838_INS [dm6]	A	ATAGAGGAGA	1.841e^-4	0.84		TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7851272	3L_7851272_SNP [dm3] 3L_7858172_SNP [dm6]	A	C	1.848e^-4	0.84	INTRON Pdp1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20430395	X_20430395_SNP [dm3] X_20559368_SNP [dm6]	T	A	1.848e^-4	0.84	INTRON RunxB
3L	3578966	3L_3578966_SNP [dm3] 3L_3578966_SNP [dm6]	G	A	1.851e^-4	0.84	INTRON Eip63E	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	9474573	2R_9474573_SNP [dm3] 2R_13587068_SNP [dm6]	G	T	1.871e^-4	0.84	INTRON CG6191 & 1 other
3R	5847785	3R_5847785_SNP [dm3] 3R_10022063_SNP [dm6]	A	G	1.875e^-4	0.84	UPSTREAM Mical DOWNSTREAM CG31407 INTRON Mical	TF binding site mE1_TFBS_inv
2R	12042639	2R_12042639_SNP [dm3] 2R_16155134_SNP [dm6]	T	A	1.890e^-4	0.84	INTRON lbk	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	7201109	2R_7201109_SNP [dm3] 2R_11313604_SNP [dm6]	C	A	1.891e^-4	0.84	NON_SYNONYMOUS_CODING nompA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8391847	X_8391847_SNP [dm3] X_8497814_SNP [dm6]	A	G	1.904e^-4	0.84	INTRON CG33181	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18435117	2L_18435117_SNP [dm3] 2L_18435117_SNP [dm6]	A	C	1.906e^-4	0.84	INTERGENIC
3L	13725500	3L_13725500_DEL [dm3] 3L_13732400_DEL [dm6]	ACTGACAGA	A	1.909e^-4	0.84	INTRON bru-3
X	6431461	X_6431461_SNP [dm3] X_6537428_SNP [dm6]	A	C	1.915e^-4	0.84	UTR_3_PRIME dx
X	21283733	X_21283733_SNP [dm3] X_21412706_SNP [dm6]	C	T	1.925e^-4	0.84	INTERGENIC
3R	20017323	3R_20017323_SNP [dm3] 3R_24191601_SNP [dm6]	C	T	1.927e^-4	0.84	NON_SYNONYMOUS_CODING jnj
2R	18714658	2R_18714658_SNP [dm3] 2R_22827135_SNP [dm6]	A	T	1.927e^-4	0.84	INTRON CG42284 & 1 other
3L	7853696	3L_7853696_SNP [dm3] 3L_7860596_SNP [dm6]	T	C	1.928e^-4	0.84	INTRON Pdp1
2L	15348561	2L_15348561_SNP [dm3] 2L_15348561_SNP [dm6]	T	G	1.935e^-4	0.84	INTERGENIC
2L	15348564	2L_15348564_INS [dm3] 2L_15348564_INS [dm6]	T	TACAG	1.938e^-4	0.84	INTERGENIC
3L	5588039	3L_5588039_SNP [dm3] 3L_5594939_SNP [dm6]	C	A	1.940e^-4	0.84	UPSTREAM CG5150 INTRON CG10592	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	3314913	3L_3314913_SNP [dm3] 3L_3314913_SNP [dm6]	T	C	1.951e^-4	0.84	UPSTREAM Drsl3 & 1 other DOWNSTREAM ZnT63C & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	4493441	2R_4493441_SNP [dm3] 2R_8605936_SNP [dm6]	C	T	1.952e^-4	0.84	INTRON rgr	TF binding site mE1_TFBS_cad
2R	3614746	2R_3614746_SNP [dm3] 2R_7727241_SNP [dm6]	T	A	1.954e^-4	0.84	UPSTREAM CG18812 INTRON CG18812
3L	494854	3L_494854_SNP [dm3] 3L_494854_SNP [dm6]	G	C	1.958e^-4	0.84	INTRON klar
X	11353577	X_11353577_SNP [dm3] X_11459544_SNP [dm6]	T	C	1.961e^-4	0.84	UPSTREAM CG43155 DOWNSTREAM HP5 INTERGENIC
2R	10836840	2R_10836840_SNP [dm3] 2R_14949335_SNP [dm6]	T	G	1.965e^-4	0.84	INTRON aPKC
2L	9126659	2L_9126659_SNP [dm3] 2L_9126659_SNP [dm6]	A	G	1.970e^-4	0.84	INTRON CG32982	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr
X	9638379	X_9638379_SNP [dm3] X_9744346_SNP [dm6]	T	C	1.971e^-4	0.84	INTRON Sp1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12428278	3L_12428278_INS [dm3] 3L_12435178_INS [dm6]	T	AAATAAGAAAATAAC...	1.977e^-4	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z
3L	12428281	3L_12428281_SNP [dm3] 3L_12435181_SNP [dm6]	A	G	1.989e^-4	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z
X	6809216	X_6809216_SNP [dm3] X_6915183_SNP [dm6]	G	A	1.990e^-4	0.84	INTRON CG14431	TF binding site mE1_TFBS_HSA
2R	18708417	2R_18708417_SNP [dm3] 2R_22820912_SNP [dm6]	T	C	1.997e^-4	0.84	UPSTREAM CG42284 INTRON CG30271	TF binding site mE1_TFBS_chinmo
2L	8963900	2L_8963900_SNP [dm3] 2L_8963900_SNP [dm6]	C	T	1.998e^-4	0.84	SYNONYMOUS_CODING CG32985	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25563221	3R_25563221_SNP [dm3] 3R_29737499_SNP [dm6]	T	A	2.004e^-4	0.84	SYNONYMOUS_CODING CG7598 UPSTREAM CG7601 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	11101477	2R_11101477_SNP [dm3] 2R_15213972_SNP [dm6]	G	A	2.005e^-4	0.84	UPSTREAM row DOWNSTREAM CG8093 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	21283918	X_21283918_SNP [dm3] X_21412891_SNP [dm6]	T	C	2.012e^-4	0.84	INTERGENIC
2R	6086460	2R_6086460_SNP [dm3] 2R_10198955_SNP [dm6]	C	T	2.025e^-4	0.84	INTRON CG34221
X	15161323	X_15161323_SNP [dm3] X_15267290_SNP [dm6]	C	T	2.026e^-4	0.84	INTERGENIC
3L	12095223	3L_12095223_SNP [dm3] 3L_12102123_SNP [dm6]	C	T	2.026e^-4	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2R	8512681	2R_8512681_SNP [dm3] 2R_12625176_SNP [dm6]	A	C	2.027e^-4	0.84	UPSTREAM CG17760 INTRON CG30054
3L	2963355	3L_2963355_SNP [dm3] 3L_2963355_SNP [dm6]	C	T	2.032e^-4	0.84	SYNONYMOUS_CODING Or63a UTR_3_PRIME Or63a
3L	2533704	3L_2533704_DEL [dm3] 3L_2533704_DEL [dm6]	GGAATGGTCGGATGGCGGCG...	G	2.041e^-4	0.84	INTRON Spn
2R	12340993	2R_12340993_SNP [dm3] 2R_16453488_SNP [dm6]	T	A	2.045e^-4	0.84	INTERGENIC
3L	10534377	3L_10534377_SNP [dm3] 3L_10541277_SNP [dm6]	A	T	2.051e^-4	0.84	INTRON A2bp1
2R	9472598	2R_9472598_SNP [dm3] 2R_13585093_SNP [dm6]	A	T	2.056e^-4	0.84	INTRON CG6191 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_ttk mE1_TFBS_zfh1
2L	6229986	2L_6229986_SNP [dm3] 2L_6229986_SNP [dm6]	T	C	2.062e^-4	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18500971	2R_18500971_SNP [dm3] 2R_22613466_SNP [dm6]	C	A	2.062e^-4	0.84	UPSTREAM CG33143 & 1 other INTERGENIC
3R	25042173	3R_25042173_SNP [dm3] 3R_29216451_SNP [dm6]	T	C	2.072e^-4	0.84	UPSTREAM mir-996 DOWNSTREAM mir-279 INTRON CR31044 EXON CR31044	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3L	4016675	3L_4016675_SNP [dm3] 3L_4016675_SNP [dm6]	C	T	2.081e^-4	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	16086048	2R_16086048_SNP [dm3] 2R_20198543_SNP [dm6]	G	T	2.086e^-4	0.84	INTERGENIC
2L	15348566	2L_15348566_SNP [dm3] 2L_15348566_SNP [dm6]	T	A	2.099e^-4	0.84	INTERGENIC
2R	18366963	2R_18366963_SNP [dm3] 2R_22479458_SNP [dm6]	T	A	2.103e^-4	0.84	INTRON CG4752	TF binding site mE1_TFBS_cad
3R	20192144	3R_20192144_SNP [dm3] 3R_24366422_SNP [dm6]	C	T	2.113e^-4	0.84	DOWNSTREAM CG42811 & 2 others INTERGENIC	TF binding site mE1_TFBS_inv
2L	8140977	2L_8140977_SNP [dm3] 2L_8140977_SNP [dm6]	G	A	2.113e^-4	0.84	DOWNSTREAM mir-4984 INTRON CG8552	TF binding site mE1_TFBS_cad
X	22326665	X_22326665_SNP [dm3] X_22924829_SNP [dm6]	G	C	2.113e^-4	0.84	INTERGENIC	transposable element FlyBase
3L	11948964	3L_11948964_SNP [dm3] 3L_11955864_SNP [dm6]	C	T	2.118e^-4	0.84	SYNONYMOUS_CODING CG7248 DOWNSTREAM CG11570
2R	12042637	2R_12042637_SNP [dm3] 2R_16155132_SNP [dm6]	T	C	2.127e^-4	0.84	INTRON lbk	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	27439947	3R_27439947_SNP [dm3] 3R_31614225_SNP [dm6]	C	G	2.135e^-4	0.84	SPLICE_SITE_REGION Med INTRON Med	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1386580	3L_1386580_SNP [dm3] 3L_1386580_SNP [dm6]	G	A	2.138e^-4	0.84	NON_SYNONYMOUS_CODING ru INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	18595583	3R_18595583_SNP [dm3] 3R_22769861_SNP [dm6]	T	A	2.142e^-4	0.84	UTR_3_PRIME CG43093 UPSTREAM CG43092 DOWNSTREAM CG43094 INTRON Usp12-46 & 1 other
2L	14422993	2L_14422993_SNP [dm3] 2L_14422993_SNP [dm6]	G	A	2.143e^-4	0.84	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	21283823	X_21283823_SNP [dm3] X_21412796_SNP [dm6]	A	T	2.148e^-4	0.84	INTERGENIC
X	8391791	X_8391791_SNP [dm3] X_8497758_SNP [dm6]	G	T	2.149e^-4	0.84	INTRON CG33181	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12455478	2L_12455478_SNP [dm3] 2L_12455478_SNP [dm6]	A	C	2.150e^-4	0.84	DOWNSTREAM bun & 1 other INTERGENIC
2L	6117022	2L_6117022_SNP [dm3] 2L_6117022_SNP [dm6]	C	A	2.158e^-4	0.84	INTRON stai	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	20906715	3R_20906715_SNP [dm3] 3R_25080993_SNP [dm6]	A	C	2.160e^-4	0.84	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17296043	2R_17296043_SNP [dm3] 2R_21408538_SNP [dm6]	A	T	2.162e^-4	0.84	INTRON Sdc
3R	14287661	3R_14287661_SNP [dm3] 3R_18461939_SNP [dm6]	A	C	2.167e^-4	0.84	INTRON fru
2R	10315443	2R_10315443_SNP [dm3] 2R_14427938_SNP [dm6]	T	C	2.170e^-4	0.84	SYNONYMOUS_CODING phyl	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	12428301	3L_12428301_SNP [dm3] 3L_12435201_SNP [dm6]	C	A	2.170e^-4	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z
2L	12319326	2L_12319326_SNP [dm3] 2L_12319326_SNP [dm6]	T	C	2.174e^-4	0.84	INTERGENIC
2R	15433623	2R_15433623_SNP [dm3] 2R_19546118_SNP [dm6]	C	T	2.182e^-4	0.84	INTRON sm	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv
3R	21423316	3R_21423316_SNP [dm3] 3R_25597594_SNP [dm6]	C	T	2.186e^-4	0.84	INTRON ymp & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_zfh1
3R	8605215	3R_8605215_SNP [dm3] 3R_12779493_SNP [dm6]	T	C	2.194e^-4	0.84	INTRON beat-Vc
3R	460834	3R_460834_SNP [dm3] 3R_4635112_SNP [dm6]	G	T	2.195e^-4	0.84	EXON CR45673	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10842098	2L_10842098_SNP [dm3] 2L_10842098_SNP [dm6]	G	T	2.196e^-4	0.84	NON_SYNONYMOUS_CODING CG6700 DOWNSTREAM CG17139 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3842804	3L_3842804_SNP [dm3] 3L_3842804_SNP [dm6]	A	G	2.197e^-4	0.84	DOWNSTREAM enc INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad
3R	5696265	3R_5696265_SNP [dm3] 3R_9870543_SNP [dm6]	G	A	2.200e^-4	0.84	INTERGENIC
2R	9792135	2R_9792135_SNP [dm3] 2R_13904630_SNP [dm6]	C	G	2.204e^-4	0.84	NON_SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18250131	3R_18250131_SNP [dm3] 3R_22424409_SNP [dm6]	G	A	2.211e^-4	0.84	SYNONYMOUS_CODING pinta DOWNSTREAM CG13847
3R	25563014	3R_25563014_SNP [dm3] 3R_29737292_SNP [dm6]	C	T	2.211e^-4	0.84	SYNONYMOUS_CODING CG7598 UPSTREAM CG7601 & 1 other	TF binding site mE1_TFBS_sens mE1_TFBS_Ubx
2L	16641226	2L_16641226_DEL [dm3] 2L_16641226_DEL [dm6]	AA	A	2.218e^-4	0.84	INTRON CG42389
2L	12459882	2L_12459882_SNP [dm3] 2L_12459882_SNP [dm6]	T	G	2.226e^-4	0.84	DOWNSTREAM mir-967 INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	18749450	2L_18749450_SNP [dm3] 2L_18749450_SNP [dm6]	T	C	2.227e^-4	0.84	INTERGENIC
X	21283615	X_21283615_SNP [dm3] X_21412588_SNP [dm6]	A	C	2.231e^-4	0.84	INTERGENIC
3L	481568	3L_481568_SNP [dm3] 3L_481568_SNP [dm6]	C	T	2.233e^-4	0.84	INTRON klar
3L	494705	3L_494705_SNP [dm3] 3L_494705_SNP [dm6]	T	C	2.233e^-4	0.84	INTRON klar
2L	12449940	2L_12449940_SNP [dm3] 2L_12449940_SNP [dm6]	A	C	2.234e^-4	0.84	SYNONYMOUS_CODING Oatp33Eb	TF binding site mE1_TFBS_cad
2R	11002504	2R_11002504_DEL [dm3] 2R_15114999_DEL [dm6]	TCT	T	2.239e^-4	0.84	UPSTREAM chn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	3569351	3L_3569351_SNP [dm3] 3L_3569351_SNP [dm6]	G	T	2.242e^-4	0.84	INTRON Eip63E	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	21283663	X_21283663_INS [dm3] X_21412636_INS [dm6]	G	GT	2.243e^-4	0.84	INTERGENIC
X	3546118	X_3546118_SNP [dm3] X_3652085_SNP [dm6]	C	A	2.246e^-4	0.84	INTRON AstA-R1
3L	3667153	3L_3667153_SNP [dm3] 3L_3667153_SNP [dm6]	G	C	2.249e^-4	0.84	INTERGENIC
3R	15540502	3R_15540502_SNP [dm3] 3R_19714780_SNP [dm6]	G	C	2.267e^-4	0.84	DOWNSTREAM CG34286 INTERGENIC
3L	487170	3L_487170_SNP [dm3] 3L_487170_SNP [dm6]	G	A	2.274e^-4	0.84	INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	13190177	X_13190177_SNP [dm3] X_13296144_SNP [dm6]	T	G	2.289e^-4	0.84	UPSTREAM CG1622 INTRON CG1764	TF binding site BDTNP1_TFBS_dl
3L	13724770	3L_13724770_SNP [dm3] 3L_13731670_SNP [dm6]	A	C	2.289e^-4	0.84	INTRON bru-3
3L	22905235	3L_22905235_SNP [dm3] 3L_22912135_SNP [dm6]	G	A	2.290e^-4	0.84	SYNONYMOUS_CODING CG12768	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	846066	3R_846066_SNP [dm3] 3R_5020344_SNP [dm6]	C	G	2.291e^-4	0.84	INTRON CR45585	TF binding site BDTNP1_TFBS_dl
X	21948240	X_21948240_SNP [dm3] X_22546404_SNP [dm6]	A	T	2.292e^-4	0.84	UPSTREAM CG17601 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	20268982	3R_20268982_SNP [dm3] 3R_24443260_SNP [dm6]	C	A	2.292e^-4	0.84	INTRON nAChRalpha1
3L	491450	3L_491450_SNP [dm3] 3L_491450_SNP [dm6]	C	G	2.294e^-4	0.84	UPSTREAM klar INTRON klar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	15348540	2L_15348540_SNP [dm3] 2L_15348540_SNP [dm6]	T	C	2.295e^-4	0.84	INTERGENIC
3R	8443852	3R_8443852_SNP [dm3] 3R_12618130_SNP [dm6]	G	A	2.297e^-4	0.84	DOWNSTREAM CR44942 INTERGENIC
2L	14745455	2L_14745455_SNP [dm3] 2L_14745455_SNP [dm6]	A	C	2.300e^-4	0.84	UPSTREAM CR45459 & 1 other DOWNSTREAM CG42681 EXON CR45460
2L	15348573	2L_15348573_SNP [dm3] 2L_15348573_SNP [dm6]	A	G	2.304e^-4	0.84	INTERGENIC
2R	6956724	2R_6956724_SNP [dm3] 2R_11069219_SNP [dm6]	C	T	2.305e^-4	0.84	INTRON luna	TF binding site mE1_TFBS_chinmo
2L	8767452	2L_8767452_SNP [dm3] 2L_8767452_SNP [dm6]	G	A	2.307e^-4	0.84	SYNONYMOUS_CODING CG9463
2L	7387939	2L_7387939_SNP [dm3] 2L_7387939_SNP [dm6]	C	A	2.311e^-4	0.84	UPSTREAM gudu INTRON CG5149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3R	17388051	3R_17388051_SNP [dm3] 3R_21562329_SNP [dm6]	T	C	2.313e^-4	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	483016	3L_483016_DEL [dm3] 3L_483016_DEL [dm6]	GAAGTGATATTAGCAAGG...	G	2.322e^-4	0.84	INTRON klar
X	2598584	X_2598584_SNP [dm3] X_2704551_SNP [dm6]	C	A	2.323e^-4	0.84	UPSTREAM eIF2B-beta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run
3R	26133182	3R_26133182_SNP [dm3] 3R_30307460_SNP [dm6]	G	T	2.326e^-4	0.84	UPSTREAM CG34300 INTRON hdc
2R	11973806	2R_11973806_DEL [dm3] 2R_16086301_DEL [dm6]	TATT	T	2.333e^-4	0.84	INTRON Dg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	491744	3L_491744_SNP [dm3] 3L_491744_SNP [dm6]	T	A	2.335e^-4	0.84	UPSTREAM klar INTRON klar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	10608636	2L_10608636_SNP [dm3] 2L_10608636_SNP [dm6]	A	G	2.340e^-4	0.84	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	4549915	X_4549915_SNP [dm3] X_4655882_SNP [dm6]	A	G	2.343e^-4	0.84	INTRON Cbp80
3L	3098451	3L_3098451_SNP [dm3] 3L_3098451_SNP [dm6]	T	A	2.354e^-4	0.84	DOWNSTREAM tRNA:CR32286 INTRON Cht7
3R	5723796	3R_5723796_SNP [dm3] 3R_9898074_SNP [dm6]	A	G	2.356e^-4	0.84	INTRON Glut4EF
3R	25442959	3R_25442959_SNP [dm3] 3R_29617237_SNP [dm6]	T	C	2.359e^-4	0.84	DOWNSTREAM alph INTERGENIC
X	16559137	X_16559137_DEL [dm3] X_16665104_DEL [dm6]	ATAT	G	2.362e^-4	0.84	UPSTREAM CG15865 INTRON r
3R	6034946	3R_6034946_SNP [dm3] 3R_10209224_SNP [dm6]	C	T	2.370e^-4	0.84	INTRON Syn & 1 other
3R	16264558	3R_16264558_SNP [dm3] 3R_20438836_SNP [dm6]	C	A	2.374e^-4	0.84	INTRON Gfrl
2R	12013818	2R_12013818_SNP [dm3] 2R_16126313_SNP [dm6]	T	A	2.376e^-4	0.84	INTRON spin	TF binding site BDTNP1_TFBS_dl
2L	7613237	2L_7613237_SNP [dm3] 2L_7613237_SNP [dm6]	T	C	2.378e^-4	0.84	INTRON CG6739
2L	5837419	2L_5837419_SNP [dm3] 2L_5837419_SNP [dm6]	G	T	2.380e^-4	0.84	INTRON TrissinR
X	9126690	X_9126690_SNP [dm3] X_9232657_SNP [dm6]	A	G	2.388e^-4	0.84	UPSTREAM CG12121 DOWNSTREAM Ir8a INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
X	17553858	X_17553858_SNP [dm3] X_17659825_SNP [dm6]	A	G	2.389e^-4	0.84	INTRON beta-Spec	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	3570084	3L_3570084_SNP [dm3] 3L_3570084_SNP [dm6]	C	T	2.401e^-4	0.84	INTRON Eip63E	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	18456100	3R_18456100_SNP [dm3] 3R_22630378_SNP [dm6]	C	T	2.403e^-4	0.84	SYNONYMOUS_CODING loco INTRON loco EXON CR43474	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	481815	3L_481815_SNP [dm3] 3L_481815_SNP [dm6]	A	G	2.410e^-4	0.84	INTRON klar
2R	9472860	2R_9472860_SNP [dm3] 2R_13585355_SNP [dm6]	A	G	2.419e^-4	0.84	INTRON CG6191 & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_zfh1
2L	17898402	2L_17898402_SNP [dm3] 2L_17898402_SNP [dm6]	A	G	2.423e^-4	0.84	INTERGENIC
3L	2540680	3L_2540680_SNP [dm3] 3L_2540680_SNP [dm6]	T	G	2.424e^-4	0.84	INTRON Spn
3L	2540682	3L_2540682_SNP [dm3] 3L_2540682_SNP [dm6]	C	T	2.424e^-4	0.84	INTRON Spn
3R	6036260	3R_6036260_SNP [dm3] 3R_10210538_SNP [dm6]	G	A	2.427e^-4	0.84	INTRON Syn & 1 other
3L	3520578	3L_3520578_SNP [dm3] 3L_3520578_SNP [dm6]	T	C	2.431e^-4	0.84	INTRON Eip63E
X	7515270	X_7515270_SNP [dm3] X_7621237_SNP [dm6]	T	G	2.433e^-4	0.84	INTRON ct	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	19006191	2R_19006191_SNP [dm3] 2R_23118668_SNP [dm6]	T	C	2.441e^-4	0.84	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	3661026	3L_3661026_SNP [dm3] 3L_3661026_SNP [dm6]	C	A	2.453e^-4	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	16233003	2L_16233003_SNP [dm3] 2L_16233003_SNP [dm6]	T	C	2.453e^-4	0.84	INTRON CG42817
X	7332983	X_7332983_INS [dm3] X_7438950_INS [dm6]	T	TT	2.456e^-4	0.84	INTERGENIC
2L	15027829	2L_15027829_SNP [dm3] 2L_15027829_SNP [dm6]	T	C	2.465e^-4	0.84	SYNONYMOUS_CODING CG33310 INTRON GABA-B-R1
2R	3670445	2R_3670445_SNP [dm3] 2R_7782940_SNP [dm6]	A	G	2.471e^-4	0.84	UTR_3_PRIME cn UPSTREAM CR45108 & 2 others	TF binding site BDTNP1_TFBS_dl
3R	16520981	3R_16520981_SNP [dm3] 3R_20695259_SNP [dm6]	C	T	2.473e^-4	0.84	INTRON Oamb
2L	14601513	2L_14601513_INS [dm3] 2L_14601513_INS [dm6]	T	TG	2.477e^-4	0.84	INTRON osp	TF binding site mE1_TFBS_HSA
3R	6037853	3R_6037853_DEL [dm3] 3R_10212131_DEL [dm6]	GA	G	2.480e^-4	0.84	INTRON Syn & 1 other	TF binding site mE1_TFBS_inv
2R	16735435	2R_16735435_SNP [dm3] 2R_20847930_SNP [dm6]	A	T	2.485e^-4	0.84	DOWNSTREAM CG17999 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	9472755	2R_9472755_SNP [dm3] 2R_13585250_SNP [dm6]	A	T	2.486e^-4	0.84	INTRON CG6191 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_zfh1
2L	21718010	2L_21718010_SNP [dm3] 2L_21718010_SNP [dm6]	T	A	2.495e^-4	0.84	INTRON CG31619
3L	10594460	3L_10594460_SNP [dm3] 3L_10601360_SNP [dm6]	C	T	2.513e^-4	0.84	INTERGENIC
3R	8604961	3R_8604961_SNP [dm3] 3R_12779239_SNP [dm6]	G	A	2.517e^-4	0.84	INTRON beat-Vc
3L	2540688	3L_2540688_SNP [dm3] 3L_2540688_SNP [dm6]	C	A	2.522e^-4	0.84	INTRON Spn
X	13960901	X_13960901_SNP [dm3] X_14066868_SNP [dm6]	G	A	2.534e^-4	0.84	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	4534637	3L_4534637_SNP [dm3] 3L_4534637_SNP [dm6]	G	A	2.541e^-4	0.84	INTRON CG11353
2L	17803970	2L_17803970_SNP [dm3] 2L_17803970_SNP [dm6]	C	T	2.544e^-4	0.84	INTRON CadN2
3R	15466176	3R_15466176_SNP [dm3] 3R_19640454_SNP [dm6]	T	A	2.546e^-4	0.84	INTRON subdued
2R	9078171	2R_9078171_DEL [dm3] 2R_13190666_DEL [dm6]	ACAGA	A	2.549e^-4	0.84	UPSTREAM seq & 2 others INTRON Kdm4B	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	13724740	3L_13724740_DEL [dm3] 3L_13731640_DEL [dm6]	GCCACAT	G	2.549e^-4	0.84	INTRON bru-3
X	12150852	X_12150852_SNP [dm3] X_12256819_SNP [dm6]	A	T	2.549e^-4	0.84	INTRON Ten-a
2L	14616027	2L_14616027_MNP [dm3] 2L_14616027_MNP [dm6]	TAC	ACA	2.555e^-4	0.84	UPSTREAM Adhr & 1 other INTRON osp & 2 others	TF binding site mE1_TFBS_cad
X	17219055	X_17219055_SNP [dm3] X_17325022_SNP [dm6]	C	T	2.558e^-4	0.84	DOWNSTREAM B-H2 INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_Kr
3L	12316403	3L_12316403_SNP [dm3] 3L_12323303_SNP [dm6]	T	G	2.563e^-4	0.84	INTERGENIC
2L	8909947	2L_8909947_SNP [dm3] 2L_8909947_SNP [dm6]	T	A	2.570e^-4	0.84	INTRON CG34398
2R	8925321	2R_8925321_SNP [dm3] 2R_13037816_SNP [dm6]	C	G	2.585e^-4	0.84	INTERGENIC
2L	12442978	2L_12442978_SNP [dm3] 2L_12442978_SNP [dm6]	C	A	2.591e^-4	0.84	INTRON Oatp33Ea
2L	5824641	2L_5824641_SNP [dm3] 2L_5824641_SNP [dm6]	A	C	2.593e^-4	0.84	UTR_5_PRIME TrissinR UPSTREAM TrissinR
3L	7283299	3L_7283299_SNP [dm3] 3L_7290199_SNP [dm6]	C	A	2.600e^-4	0.84	INTRON unc-13-4A
2R	14498028	2R_14498028_SNP [dm3] 2R_18610523_SNP [dm6]	G	A	2.606e^-4	0.84	INTRON GEFmeso
2L	8878184	2L_8878184_SNP [dm3] 2L_8878184_SNP [dm6]	T	A	2.607e^-4	0.84	INTERGENIC	TF binding site mE1_TFBS_cad
X	5047145	X_5047145_SNP [dm3] X_5153112_SNP [dm6]	G	A	2.609e^-4	0.84	INTRON rg & 1 other
2R	17112895	2R_17112895_SNP [dm3] 2R_21225390_SNP [dm6]	A	G	2.611e^-4	0.84	INTRON ASPP
X	21283397	X_21283397_SNP [dm3] X_21412370_SNP [dm6]	C	A	2.613e^-4	0.84	INTERGENIC
3R	14287646	3R_14287646_INS [dm3] 3R_18461924_INS [dm6]	C	TA	2.613e^-4	0.84	INTRON fru
2L	492723	2L_492723_SNP [dm3] 2L_492723_SNP [dm6]	G	A	2.616e^-4	0.84	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
2R	2491237	2R_2491237_SNP [dm3] 2R_6603732_SNP [dm6]	T	G	2.620e^-4	0.84	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17219926	X_17219926_SNP [dm3] X_17325893_SNP [dm6]	G	T	2.621e^-4	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	18191070	3R_18191070_SNP [dm3] 3R_22365348_SNP [dm6]	G	A	2.637e^-4	0.84	SYNONYMOUS_CODING CG5382 DOWNSTREAM CG7071 & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15348557	2L_15348557_SNP [dm3] 2L_15348557_SNP [dm6]	C	T	2.653e^-4	0.84	INTERGENIC
2R	10690994	2R_10690994_SNP [dm3] 2R_14803489_SNP [dm6]	G	A	2.655e^-4	0.84	INTRON kn	regulatory region REDfly_CRMs
2R	10691008	2R_10691008_SNP [dm3] 2R_14803503_SNP [dm6]	A	G	2.655e^-4	0.84	INTRON kn	regulatory region REDfly_CRMs
3L	9950658	3L_9950658_SNP [dm3] 3L_9957558_SNP [dm6]	G	A	2.657e^-4	0.84	INTRON CG34356
3R	19536338	3R_19536338_SNP [dm3] 3R_23710616_SNP [dm6]	G	A	2.663e^-4	0.84	SYNONYMOUS_CODING CG10301 UPSTREAM CG10300
X	8275349	X_8275349_DEL [dm3] X_8381316_DEL [dm6]	AATGCACA	A	2.664e^-4	0.84	INTERGENIC
X	11353590	X_11353590_SNP [dm3] X_11459557_SNP [dm6]	G	A	2.669e^-4	0.84	UPSTREAM CG43155 DOWNSTREAM HP5 INTERGENIC
2L	6234641	2L_6234641_SNP [dm3] 2L_6234641_SNP [dm6]	C	A	2.678e^-4	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	13107326	2L_13107326_SNP [dm3] 2L_13107326_SNP [dm6]	T	A	2.688e^-4	0.84	NON_SYNONYMOUS_CODING CG5142	TF binding site mE1_TFBS_chinmo
2L	4778958	2L_4778958_SNP [dm3] 2L_4778958_SNP [dm6]	C	A	2.694e^-4	0.84	INTRON CG15630
3L	491706	3L_491706_SNP [dm3] 3L_491706_SNP [dm6]	A	G	2.698e^-4	0.84	UPSTREAM klar INTRON klar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	7333026	X_7333026_SNP [dm3] X_7438993_SNP [dm6]	C	A	2.703e^-4	0.84	INTERGENIC
2L	8880978	2L_8880978_SNP [dm3] 2L_8880978_SNP [dm6]	G	T	2.706e^-4	0.84	INTERGENIC	TF binding site mE1_TFBS_cnc
3L	10169038	3L_10169038_SNP [dm3] 3L_10175938_SNP [dm6]	C	G	2.716e^-4	0.84	INTRON dpr10
3L	496037	3L_496037_SNP [dm3] 3L_496037_SNP [dm6]	G	A	2.722e^-4	0.84	INTRON klar
3L	13108308	3L_13108308_SNP [dm3] 3L_13115208_SNP [dm6]	A	T	2.748e^-4	0.84	UTR_5_PRIME trn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2R	13834005	2R_13834005_SNP [dm3] 2R_17946500_SNP [dm6]	G	A	2.750e^-4	0.84	INTERGENIC
3R	10901909	3R_10901909_INS [dm3] 3R_15076187_INS [dm6]	G	GAAT	2.754e^-4	0.84	UTR_5_PRIME dpr9
3L	22901857	3L_22901857_INS [dm3] 3L_22908757_INS [dm6]	A	AA	2.758e^-4	0.84	UPSTREAM CR45661 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16969310	2R_16969310_SNP [dm3] 2R_21081805_SNP [dm6]	C	A	2.760e^-4	0.84	INTRON Treh
2L	120639	2L_120639_INS [dm3] 2L_120639_INS [dm6]	C	CA	2.764e^-4	0.84	UTR_5_PRIME CG4822 UPSTREAM CG4822 INTRON CG11455 & 1 other
2R	11139276	2R_11139276_SNP [dm3] 2R_15251771_SNP [dm6]	T	A	2.765e^-4	0.84	UPSTREAM scb INTRON scb	TF binding site mE1_TFBS_Trl
2L	6230049	2L_6230049_SNP [dm3] 2L_6230049_SNP [dm6]	T	A	2.766e^-4	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12565832	2L_12565832_SNP [dm3] 2L_12565832_SNP [dm6]	T	G	2.769e^-4	0.84	INTERGENIC
2L	21789717	2L_21789717_SNP [dm3] 2L_21789717_SNP [dm6]	G	C	2.773e^-4	0.84	INTRON CG31612	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	11353074	X_11353074_SNP [dm3] X_11459041_SNP [dm6]	T	C	2.774e^-4	0.84	UTR_3_PRIME HP5 UPSTREAM CG43155
X	17551070	X_17551070_SNP [dm3] X_17657037_SNP [dm6]	C	T	2.774e^-4	0.84	UPSTREAM beta-Spec & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	20245710	X_20245710_SNP [dm3] X_20374683_SNP [dm6]	C	T	2.780e^-4	0.84	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	13551065	X_13551065_SNP [dm3] X_13657032_SNP [dm6]	G	A	2.787e^-4	0.84	INTRON NFAT
3R	22593412	3R_22593412_DEL [dm3] 3R_26767690_DEL [dm6]	TT	T	2.800e^-4	0.84	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	13584030	3R_13584030_SNP [dm3] 3R_17758308_SNP [dm6]	G	A	2.803e^-4	0.84	INTRON TyrR
3R	8623356	3R_8623356_SNP [dm3] 3R_12797634_SNP [dm6]	T	C	2.804e^-4	0.84	INTERGENIC
3L	490566	3L_490566_SNP [dm3] 3L_490566_SNP [dm6]	T	C	2.806e^-4	0.84	UTR_5_PRIME klar INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
X	15489979	X_15489979_SNP [dm3] X_15595946_SNP [dm6]	T	C	2.812e^-4	0.84	INTERGENIC
3R	25666208	3R_25666208_SNP [dm3] 3R_29840486_SNP [dm6]	G	C	2.816e^-4	0.84	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3547224	X_3547224_SNP [dm3] X_3653191_SNP [dm6]	G	A	2.819e^-4	0.84	INTRON AstA-R1
X	9126675	X_9126675_SNP [dm3] X_9232642_SNP [dm6]	G	T	2.824e^-4	0.84	UPSTREAM CG12121 DOWNSTREAM Ir8a INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
2L	9840967	2L_9840967_SNP [dm3] 2L_9840967_SNP [dm6]	G	T	2.826e^-4	0.84	INTRON nAChRalpha6
3L	467199	3L_467199_SNP [dm3] 3L_467199_SNP [dm6]	T	A	2.826e^-4	0.84	INTRON klar
2L	7386848	2L_7386848_SNP [dm3] 2L_7386848_SNP [dm6]	C	T	2.836e^-4	0.84	INTRON CG5149	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	494863	3L_494863_SNP [dm3] 3L_494863_SNP [dm6]	G	A	2.842e^-4	0.84	INTRON klar
2R	18154331	2R_18154331_SNP [dm3] 2R_22266826_SNP [dm6]	A	T	2.845e^-4	0.84	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	4663288	3L_4663288_SNP [dm3] 3L_4663288_SNP [dm6]	G	T	2.852e^-4	0.84	INTRON axo	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	20017162	3R_20017162_SNP [dm3] 3R_24191440_SNP [dm6]	T	C	2.854e^-4	0.84	NON_SYNONYMOUS_CODING jnj
2L	8881863	2L_8881863_SNP [dm3] 2L_8881863_SNP [dm6]	G	T	2.859e^-4	0.84	INTERGENIC
2L	9038524	2L_9038524_INS [dm3] 2L_9038524_INS [dm6]	G	GG	2.863e^-4	0.84	INTERGENIC
2L	120630	2L_120630_DEL [dm3] 2L_120630_DEL [dm6]	AT	C	2.869e^-4	0.84	UTR_5_PRIME CG4822 INTRON CG11455 & 1 other
2L	9987170	2L_9987170_DEL [dm3] 2L_9987170_DEL [dm6]	TC	A	2.872e^-4	0.84	INTRON bib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3R	8605216	3R_8605216_SNP [dm3] 3R_12779494_SNP [dm6]	G	C	2.874e^-4	0.84	INTRON beat-Vc
3L	2767200	3L_2767200_SNP [dm3] 3L_2767200_SNP [dm6]	C	A	2.874e^-4	0.84	UPSTREAM Mrtf INTRON CG1240	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	17551597	X_17551597_SNP [dm3] X_17657564_SNP [dm6]	A	G	2.875e^-4	0.84	UPSTREAM IntS2 INTRON beta-Spec	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	25442957	3R_25442957_SNP [dm3] 3R_29617235_SNP [dm6]	C	T	2.878e^-4	0.84	DOWNSTREAM alph INTERGENIC
2R	16266408	2R_16266408_SNP [dm3] 2R_20378903_SNP [dm6]	C	T	2.880e^-4	0.84	INTERGENIC
2R	10691016	2R_10691016_SNP [dm3] 2R_14803511_SNP [dm6]	T	C	2.882e^-4	0.84	INTRON kn	regulatory region REDfly_CRMs
X	8125569	X_8125569_SNP [dm3] X_8231536_SNP [dm6]	A	C	2.891e^-4	0.84	INTRON sdt	TF binding site BDTNP1_TFBS_dl
2R	10691005	2R_10691005_SNP [dm3] 2R_14803500_SNP [dm6]	C	T	2.891e^-4	0.84	INTRON kn	regulatory region REDfly_CRMs
2R	7392611	2R_7392611_SNP [dm3] 2R_11505106_SNP [dm6]	C	T	2.896e^-4	0.84	INTRON inv
2L	3177085	2L_3177085_SNP [dm3] 2L_3177085_SNP [dm6]	T	C	2.898e^-4	0.84	INTRON CG34393	TF binding site BDTNP1_TFBS_da
X	12309141	X_12309141_SNP [dm3] X_12415108_SNP [dm6]	C	T	2.899e^-4	0.84	INTERGENIC
2L	7613212	2L_7613212_SNP [dm3] 2L_7613212_SNP [dm6]	C	T	2.904e^-4	0.84	INTRON CG6739
2L	10847672	2L_10847672_SNP [dm3] 2L_10847672_SNP [dm6]	C	T	2.913e^-4	0.84	UTR_3_PRIME porin UPSTREAM Porin2 DOWNSTREAM porin
2L	6230013	2L_6230013_SNP [dm3] 2L_6230013_SNP [dm6]	A	G	2.920e^-4	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	824621	3L_824621_SNP [dm3] 3L_824621_SNP [dm6]	A	C	2.920e^-4	0.84	INTERGENIC
3L	3423316	3L_3423316_SNP [dm3] 3L_3423316_SNP [dm6]	T	C	2.923e^-4	0.84	INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12095835	X_12095835_SNP [dm3] X_12201802_SNP [dm6]	A	G	2.931e^-4	0.84	INTRON Ten-a
2L	6199009	2L_6199009_SNP [dm3] 2L_6199009_SNP [dm6]	C	A	2.932e^-4	0.84	INTRON CG34380
2R	17095598	2R_17095598_SNP [dm3] 2R_21208093_SNP [dm6]	C	G	2.936e^-4	0.84	INTRON CG44245 & 1 other
2L	16648856	2L_16648856_SNP [dm3] 2L_16648856_SNP [dm6]	G	A	2.949e^-4	0.84	INTRON CG42389
2L	9414222	2L_9414222_SNP [dm3] 2L_9414222_SNP [dm6]	C	A	2.951e^-4	0.84	INTRON Shawl
3L	3572673	3L_3572673_DEL [dm3] 3L_3572673_DEL [dm6]	AGACGA	A	2.953e^-4	0.84	INTRON Eip63E
X	5872396	X_5872396_SNP [dm3] X_5978363_SNP [dm6]	C	T	2.957e^-4	0.84	INTRON Grip
2R	11171651	2R_11171651_SNP [dm3] 2R_15284146_SNP [dm6]	C	T	2.963e^-4	0.84	INTRON Trpm
3R	7716341	3R_7716341_SNP [dm3] 3R_11890619_SNP [dm6]	G	A	2.965e^-4	0.84	NON_SYNONYMOUS_CODING CG31368
3R	18595575	3R_18595575_SNP [dm3] 3R_22769853_SNP [dm6]	A	C	2.970e^-4	0.84	UTR_3_PRIME CG43093 UPSTREAM CG43092 DOWNSTREAM CG43094 INTRON Usp12-46 & 1 other
3R	18595578	3R_18595578_SNP [dm3] 3R_22769856_SNP [dm6]	G	A	2.970e^-4	0.84	UTR_3_PRIME CG43093 UPSTREAM CG43092 DOWNSTREAM CG43094 INTRON Usp12-46 & 1 other
2L	6497743	2L_6497743_SNP [dm3] 2L_6497743_SNP [dm6]	C	A	2.971e^-4	0.84	UPSTREAM CG31637 DOWNSTREAM CG31638 INTRON CG9550
3L	11617739	3L_11617739_SNP [dm3] 3L_11624639_SNP [dm6]	C	T	2.977e^-4	0.84	UTR_3_PRIME CG6083 UPSTREAM CG6084
3R	18250155	3R_18250155_SNP [dm3] 3R_22424433_SNP [dm6]	T	C	2.986e^-4	0.84	SYNONYMOUS_CODING pinta DOWNSTREAM CG13847
X	6877763	X_6877763_SNP [dm3] X_6983730_SNP [dm6]	G	C	2.996e^-4	0.84	START_GAINED ogre UTR_5_PRIME ogre UPSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	6040294	2R_6040294_SNP [dm3] 2R_10152789_SNP [dm6]	A	T	2.997e^-4	0.84	INTRON KCNQ & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10597034	3L_10597034_SNP [dm3] 3L_10603934_SNP [dm6]	G	T	3.012e^-4	0.84	INTERGENIC
2L	128046	2L_128046_SNP [dm3] 2L_128046_SNP [dm6]	G	A	3.013e^-4	0.84	INTRON CG11455 & 1 other	TF binding site mE1_TFBS_Trl
X	18372775	X_18372775_SNP [dm3] X_18478742_SNP [dm6]	T	C	3.015e^-4	0.84	INTRON CG32547
2L	5491718	2L_5491718_SNP [dm3] 2L_5491718_SNP [dm6]	C	G	3.017e^-4	0.84	INTERGENIC
3L	3099654	3L_3099654_SNP [dm3] 3L_3099654_SNP [dm6]	G	T	3.019e^-4	0.84	INTRON Cht7
3R	18393497	3R_18393497_SNP [dm3] 3R_22567775_SNP [dm6]	T	C	3.023e^-4	0.84	INTERGENIC
2L	8142567	2L_8142567_SNP [dm3] 2L_8142567_SNP [dm6]	T	G	3.024e^-4	0.84	UPSTREAM mir-4984 DOWNSTREAM CG42762 INTRON CG8552
X	21948232	X_21948232_DEL [dm3] X_22546396_DEL [dm6]	TAAGCA	T	3.025e^-4	0.84	UPSTREAM CG17601 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	17374596	3R_17374596_SNP [dm3] 3R_21548874_SNP [dm6]	T	C	3.027e^-4	0.84	UTR_3_PRIME slou	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	3493284	3L_3493284_SNP [dm3] 3L_3493284_SNP [dm6]	C	T	3.030e^-4	0.84	INTRON CG42324	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	3575841	3L_3575841_SNP [dm3] 3L_3575841_SNP [dm6]	T	A	3.031e^-4	0.84	INTRON Eip63E
2L	14616016	2L_14616016_DEL [dm3] 2L_14616016_DEL [dm6]	ACT	A	3.041e^-4	0.84	UPSTREAM Adhr & 1 other INTRON osp & 2 others	TF binding site mE1_TFBS_cad
2L	7006993	2L_7006993_DEL [dm3] 2L_7006993_DEL [dm6]	CTTTGTGGC	T	3.044e^-4	0.84	INTRON uif	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	11818697	3R_11818697_SNP [dm3] 3R_15992975_SNP [dm6]	G	A	3.046e^-4	0.84	INTRON srp & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	4128697	2R_4128697_SNP [dm3] 2R_8241192_SNP [dm6]	A	G	3.056e^-4	0.84	DOWNSTREAM pnut & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2R	6891883	2R_6891883_SNP [dm3] 2R_11004378_SNP [dm6]	C	T	3.061e^-4	0.84	INTRON luna
3R	14271319	3R_14271319_SNP [dm3] 3R_18445597_SNP [dm6]	C	T	3.063e^-4	0.84	INTRON fru
2L	180019	2L_180019_INS [dm3] 2L_180019_INS [dm6]	C	CCAAC	3.065e^-4	0.84	INTRON spen	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
X	16543858	X_16543858_SNP [dm3] X_16649825_SNP [dm6]	T	A	3.070e^-4	0.84	UTR_3_PRIME mthl1 DOWNSTREAM mthl1
3L	12428302	3L_12428302_SNP [dm3] 3L_12435202_SNP [dm6]	C	T	3.070e^-4	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z
3R	13284351	3R_13284351_SNP [dm3] 3R_17458629_SNP [dm6]	A	C	3.076e^-4	0.84	INTERGENIC
3L	11064180	3L_11064180_SNP [dm3] 3L_11071080_SNP [dm6]	G	A	3.083e^-4	0.84	SYNONYMOUS_CODING Mocs1
2R	13738596	2R_13738596_SNP [dm3] 2R_17851091_SNP [dm6]	A	C	3.086e^-4	0.84	UTR_5_PRIME olf186-F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	3661077	3L_3661077_SNP [dm3] 3L_3661077_SNP [dm6]	C	G	3.087e^-4	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	6076812	3L_6076812_SNP [dm3] 3L_6083712_SNP [dm6]	A	T	3.095e^-4	0.84	INTRON CG13293	TF binding site BDTNP1_TFBS_dl
2R	10265477	2R_10265477_SNP [dm3] 2R_14377972_SNP [dm6]	G	T	3.098e^-4	0.84	UPSTREAM Dh44-R1 INTERGENIC
2R	10265479	2R_10265479_INS [dm3] 2R_14377974_INS [dm6]	C	CC	3.098e^-4	0.84	UPSTREAM Dh44-R1 INTERGENIC
3R	14469730	3R_14469730_SNP [dm3] 3R_18644008_SNP [dm6]	C	G	3.100e^-4	0.84	INTRON qin
2L	4030203	2L_4030203_SNP [dm3] 2L_4030203_SNP [dm6]	T	A	3.102e^-4	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
2L	15143236	2L_15143236_SNP [dm3] 2L_15143236_SNP [dm6]	G	T	3.104e^-4	0.84	INTERGENIC
3L	489701	3L_489701_SNP [dm3] 3L_489701_SNP [dm6]	G	A	3.117e^-4	0.84	INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18217382	2R_18217382_SNP [dm3] 2R_22329877_SNP [dm6]	T	C	3.122e^-4	0.84	UTR_3_PRIME T3dh UPSTREAM pgc & 1 other DOWNSTREAM Gp150
3L	897184	3L_897184_SNP [dm3] 3L_897184_SNP [dm6]	A	G	3.122e^-4	0.84	NON_SYNONYMOUS_CODING CG34056 UPSTREAM CG34057
3R	14545508	3R_14545508_SNP [dm3] 3R_18719786_SNP [dm6]	T	C	3.123e^-4	0.84	DOWNSTREAM VAChT INTRON Cha
X	20956293	X_20956293_SNP [dm3] X_21085266_SNP [dm6]	T	C	3.124e^-4	0.84	INTERGENIC	TF binding site mE1_TFBS_HSA
X	7332998	X_7332998_DEL [dm3] X_7438965_DEL [dm6]	ATTTTA	A	3.125e^-4	0.84	INTERGENIC
X	3013522	X_3013522_SNP [dm3] X_3119489_SNP [dm6]	A	T	3.131e^-4	0.84	INTRON kirre
2R	6086385	2R_6086385_SNP [dm3] 2R_10198880_SNP [dm6]	A	G	3.134e^-4	0.84	INTRON CG34221
3L	5129670	3L_5129670_SNP [dm3] 3L_5136570_SNP [dm6]	G	A	3.137e^-4	0.84	SYNONYMOUS_CODING CG4611 UPSTREAM CG10674 DOWNSTREAM CG4603 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22109108	3R_22109108_SNP [dm3] 3R_26283386_SNP [dm6]	A	G	3.143e^-4	0.84	INTERGENIC
3L	3575990	3L_3575990_SNP [dm3] 3L_3575990_SNP [dm6]	T	A	3.151e^-4	0.84	INTRON Eip63E
3R	21837132	3R_21837132_SNP [dm3] 3R_26011410_SNP [dm6]	G	A	3.168e^-4	0.84	UTR_3_PRIME E_spl_malpha-BFM	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_sens mE1_TFBS_Trl
2R	9488242	2R_9488242_SNP [dm3] 2R_13600737_SNP [dm6]	A	G	3.175e^-4	0.84	SYNONYMOUS_CODING CG43058
3L	6068967	3L_6068967_SNP [dm3] 3L_6075867_SNP [dm6]	G	A	3.177e^-4	0.84	SYNONYMOUS_CODING CG6610 UPSTREAM CG13295 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	3782777	2L_3782777_SNP [dm3] 2L_3782777_SNP [dm6]	C	T	3.187e^-4	0.84	SYNONYMOUS_CODING bowl	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15348562	2L_15348562_SNP [dm3] 2L_15348562_SNP [dm6]	A	T	3.194e^-4	0.84	INTERGENIC
3R	20833400	3R_20833400_DEL [dm3] 3R_25007678_DEL [dm6]	TT	C	3.201e^-4	0.84	INTRON tnc
3L	3314769	3L_3314769_SNP [dm3] 3L_3314769_SNP [dm6]	T	C	3.209e^-4	0.84	UPSTREAM Drsl3 & 1 other DOWNSTREAM ZnT63C & 1 other INTERGENIC
2R	18712161	2R_18712161_SNP [dm3] 2R_22824638_SNP [dm6]	C	T	3.211e^-4	0.84	SYNONYMOUS_CODING CG42284 UPSTREAM CG30274 & 1 other
3L	466397	3L_466397_SNP [dm3] 3L_466397_SNP [dm6]	C	T	3.215e^-4	0.84	INTRON klar
2L	1704859	2L_1704859_SNP [dm3] 2L_1704859_SNP [dm6]	A	G	3.224e^-4	0.84	UPSTREAM cpb DOWNSTREAM chinmo INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA
2R	15137572	2R_15137572_SNP [dm3] 2R_19250067_SNP [dm6]	G	T	3.225e^-4	0.84	SYNONYMOUS_CODING wbl DOWNSTREAM CG33454	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_z mE1_TFBS_Trl
2L	7531736	2L_7531736_SNP [dm3] 2L_7531736_SNP [dm6]	T	C	3.229e^-4	0.84	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	20430305	X_20430305_SNP [dm3] X_20559278_SNP [dm6]	T	A	3.229e^-4	0.84	INTRON RunxB
3R	20493672	3R_20493672_SNP [dm3] 3R_24667950_SNP [dm6]	A	C	3.230e^-4	0.84	UPSTREAM slo INTRON slo	regulatory region REDfly_CRMs
X	17553825	X_17553825_SNP [dm3] X_17659792_SNP [dm6]	G	A	3.235e^-4	0.84	INTRON beta-Spec	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	8766345	2L_8766345_SNP [dm3] 2L_8766345_SNP [dm6]	C	T	3.243e^-4	0.84	SYNONYMOUS_CODING CG9463
2R	13698707	2R_13698707_SNP [dm3] 2R_17811202_SNP [dm6]	C	A	3.249e^-4	0.84	INTRON grh	TF binding site mE1_TFBS_chinmo
3R	14287651	3R_14287651_SNP [dm3] 3R_18461929_SNP [dm6]	G	A	3.258e^-4	0.84	INTRON fru
3L	1356806	3L_1356806_SNP [dm3] 3L_1356806_SNP [dm6]	G	A	3.258e^-4	0.84	INTRON Ptp61F
X	19000008	X_19000008_SNP [dm3] X_19105975_SNP [dm6]	A	T	3.259e^-4	0.84	INTERGENIC
2L	6405045	2L_6405045_SNP [dm3] 2L_6405045_SNP [dm6]	C	T	3.259e^-4	0.84	INTRON CG42368
2L	658951	2L_658951_SNP [dm3] 2L_658951_SNP [dm6]	T	C	3.262e^-4	0.84	INTRON ds	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	489908	3L_489908_INS [dm3] 3L_489908_INS [dm6]	G	GGAAAG	3.262e^-4	0.84	INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
X	13960813	X_13960813_SNP [dm3] X_14066780_SNP [dm6]	G	A	3.263e^-4	0.84	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	13241029	2L_13241029_SNP [dm3] 2L_13241029_SNP [dm6]	C	T	3.275e^-4	0.84	UPSTREAM CR45330 INTRON CG5945	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17108229	2L_17108229_SNP [dm3] 2L_17108229_SNP [dm6]	G	T	3.276e^-4	0.84	INTERGENIC
2R	18366913	2R_18366913_SNP [dm3] 2R_22479408_SNP [dm6]	A	C	3.283e^-4	0.84	INTRON CG4752	TF binding site mE1_TFBS_cad
2L	224617	2L_224617_SNP [dm3] 2L_224617_SNP [dm6]	T	G	3.283e^-4	0.84	INTRON kis EXON CR44222	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
X	21948890	X_21948890_SNP [dm3] X_22547054_SNP [dm6]	C	G	3.285e^-4	0.84	UPSTREAM CG17601 INTERGENIC
2L	15348568	2L_15348568_SNP [dm3] 2L_15348568_SNP [dm6]	A	T	3.291e^-4	0.84	INTERGENIC
X	7588190	X_7588190_SNP [dm3] X_7694157_SNP [dm6]	T	G	3.292e^-4	0.84	INTRON CHES-1-like	TF binding site mE1_TFBS_Trl
3L	450621	3L_450621_SNP [dm3] 3L_450621_SNP [dm6]	G	A	3.295e^-4	0.84	INTRON klar
2L	4520016	2L_4520016_SNP [dm3] 2L_4520016_SNP [dm6]	A	G	3.296e^-4	0.84	SYNONYMOUS_CODING dp	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16496469	X_16496469_SNP [dm3] X_16602436_SNP [dm6]	G	T	3.296e^-4	0.84	NON_SYNONYMOUS_CODING Nup153	TF binding site mE1_TFBS_sens
2R	2557615	2R_2557615_SNP [dm3] 2R_6670110_SNP [dm6]	C	G	3.297e^-4	0.84	DOWNSTREAM Hsepi & 1 other INTERGENIC
X	12816642	X_12816642_DEL [dm3] X_12922609_DEL [dm6]	CCCCTCCCTC	C	3.300e^-4	0.84	INTRON fne
2R	12683666	2R_12683666_SNP [dm3] 2R_16796161_SNP [dm6]	C	A	3.304e^-4	0.84	INTRON CG15615
3L	2529406	3L_2529406_SNP [dm3] 3L_2529406_SNP [dm6]	T	C	3.311e^-4	0.84	INTRON Spn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21948241	X_21948241_DEL [dm3] X_22546405_DEL [dm6]	TCAGAAAATATATGA...	T	3.313e^-4	0.84	UPSTREAM CG17601 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	14287653	3R_14287653_SNP [dm3] 3R_18461931_SNP [dm6]	T	A	3.318e^-4	0.84	INTRON fru
2L	15348502	2L_15348502_INS [dm3] 2L_15348502_INS [dm6]	C	CCTGGCCATAAT...	3.322e^-4	0.84	INTERGENIC
X	4624975	X_4624975_SNP [dm3] X_4730942_SNP [dm6]	G	A	3.332e^-4	0.84	INTERGENIC
2R	18919254	2R_18919254_DEL [dm3] 2R_23031731_DEL [dm6]	TC	T	3.334e^-4	0.84	INTRON twi & 1 other
X	11353218	X_11353218_SNP [dm3] X_11459185_SNP [dm6]	G	C	3.339e^-4	0.84	UTR_3_PRIME HP5 UPSTREAM CG43155
3L	22996151	3L_22996151_SNP [dm3] 3L_23003051_SNP [dm6]	T	C	3.344e^-4	0.84	INTRON nrm	TF binding site BDTNP1_TFBS_dl
2L	19596699	2L_19596699_SNP [dm3] 2L_19596699_SNP [dm6]	A	T	3.353e^-4	0.84	INTRON Lar
2R	9472553	2R_9472553_SNP [dm3] 2R_13585048_SNP [dm6]	A	C	3.354e^-4	0.84	INTRON CG6191 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_ttk mE1_TFBS_zfh1
2L	15348613	2L_15348613_SNP [dm3] 2L_15348613_SNP [dm6]	A	T	3.359e^-4	0.84	INTERGENIC
X	7588455	X_7588455_SNP [dm3] X_7694422_SNP [dm6]	A	G	3.363e^-4	0.84	INTRON CHES-1-like	TF binding site mE1_TFBS_Trl
3R	23866611	3R_23866611_SNP [dm3] 3R_28040889_SNP [dm6]	C	A	3.364e^-4	0.84	INTRON CG34362
X	14573200	X_14573200_SNP [dm3] X_14679167_SNP [dm6]	C	T	3.365e^-4	0.84	UPSTREAM CG5321 INTERGENIC
3L	10940157	3L_10940157_SNP [dm3] 3L_10947057_SNP [dm6]	A	T	3.370e^-4	0.84	INTERGENIC	TF binding site mE1_TFBS_inv
2R	10828398	2R_10828398_SNP [dm3] 2R_14940893_SNP [dm6]	C	T	3.374e^-4	0.84	DOWNSTREAM Lap1 INTERGENIC
2L	4493968	2L_4493968_SNP [dm3] 2L_4493968_SNP [dm6]	G	A	3.382e^-4	0.84	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3R	25563253	3R_25563253_SNP [dm3] 3R_29737531_SNP [dm6]	T	G	3.387e^-4	0.84	UPSTREAM CG7601 & 1 other INTRON CG7598	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	20215452	X_20215452_INS [dm3] X_20344425_INS [dm6]	AC	TTATGCCG	3.397e^-4	0.84	INTERGENIC
X	2462975	X_2462975_SNP [dm3] X_2568942_SNP [dm6]	A	G	3.398e^-4	0.84	INTRON Pdfr
2R	10265448	2R_10265448_INS [dm3] 2R_14377943_INS [dm6]	C	CC	3.399e^-4	0.84	UPSTREAM Dh44-R1 INTERGENIC
3L	6280133	3L_6280133_SNP [dm3] 3L_6287033_SNP [dm6]	G	A	3.408e^-4	0.84	INTERGENIC
X	7332941	X_7332941_SNP [dm3] X_7438908_SNP [dm6]	C	A	3.410e^-4	0.84	INTERGENIC
3R	14287649	3R_14287649_SNP [dm3] 3R_18461927_SNP [dm6]	C	A	3.414e^-4	0.84	INTRON fru
2R	18217390	2R_18217390_SNP [dm3] 2R_22329885_SNP [dm6]	C	T	3.414e^-4	0.84	UTR_3_PRIME T3dh UPSTREAM pgc & 1 other DOWNSTREAM Gp150
3L	9307254	3L_9307254_DEL [dm3] 3L_9314154_DEL [dm6]	GAACGAGC	T	3.428e^-4	0.84	INTERGENIC
2L	10848102	2L_10848102_SNP [dm3] 2L_10848102_SNP [dm6]	T	C	3.434e^-4	0.84	SYNONYMOUS_CODING porin
X	7588115	X_7588115_SNP [dm3] X_7694082_SNP [dm6]	T	G	3.444e^-4	0.84	INTRON CHES-1-like	TF binding site mE1_TFBS_Trl
3R	5863693	3R_5863693_SNP [dm3] 3R_10037971_SNP [dm6]	A	T	3.450e^-4	0.84	INTRON Mical
X	20430337	X_20430337_SNP [dm3] X_20559310_SNP [dm6]	G	C	3.467e^-4	0.84	INTRON RunxB
2R	12315977	2R_12315977_SNP [dm3] 2R_16428472_SNP [dm6]	T	C	3.479e^-4	0.84	SYNONYMOUS_CODING Sema-2b	TF binding site BDTNP1_TFBS_twi
3R	18393492	3R_18393492_SNP [dm3] 3R_22567770_SNP [dm6]	C	A	3.480e^-4	0.84	INTERGENIC
X	14080187	X_14080187_SNP [dm3] X_14186154_SNP [dm6]	G	A	3.484e^-4	0.84	DOWNSTREAM CG32603 INTERGENIC
2L	4124618	2L_4124618_SNP [dm3] 2L_4124618_SNP [dm6]	G	T	3.484e^-4	0.84	DOWNSTREAM Sr-CI INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	3876993	2L_3876993_DEL [dm3] 2L_3876993_DEL [dm6]	AA	A	3.491e^-4	0.84	INTRON capu
X	10157154	X_10157154_SNP [dm3] X_10263121_SNP [dm6]	T	G	3.492e^-4	0.84	INTRON Hk
2L	7607900	2L_7607900_SNP [dm3] 2L_7607900_SNP [dm6]	G	T	3.492e^-4	0.84	UPSTREAM CG6739 DOWNSTREAM Cyp4d21 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	11306002	3L_11306002_SNP [dm3] 3L_11312902_SNP [dm6]	T	C	3.499e^-4	0.84	SYNONYMOUS_CODING CG7573
3R	5696272	3R_5696272_SNP [dm3] 3R_9870550_SNP [dm6]	G	A	3.502e^-4	0.84	INTERGENIC
2L	9126665	2L_9126665_SNP [dm3] 2L_9126665_SNP [dm6]	A	T	3.515e^-4	0.84	INTRON CG32982	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr
X	10544076	X_10544076_SNP [dm3] X_10650043_SNP [dm6]	C	T	3.532e^-4	0.84	INTRON X11Lbeta
2R	15152091	2R_15152091_SNP [dm3] 2R_19264586_SNP [dm6]	T	G	3.540e^-4	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	466196	3L_466196_SNP [dm3] 3L_466196_SNP [dm6]	A	G	3.549e^-4	0.84	INTRON klar
2R	18448728	2R_18448728_SNP [dm3] 2R_22561223_SNP [dm6]	T	C	3.558e^-4	0.84	INTRON px	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn
2L	3996329	2L_3996329_SNP [dm3] 2L_3996329_SNP [dm6]	A	T	3.562e^-4	0.84	INTERGENIC
2R	9497817	2R_9497817_SNP [dm3] 2R_13610312_SNP [dm6]	T	C	3.577e^-4	0.84	INTERGENIC
X	21283667	X_21283667_INS [dm3] X_21412640_INS [dm6]	A	GC	3.586e^-4	0.84	INTERGENIC
2R	6949727	2R_6949727_SNP [dm3] 2R_11062222_SNP [dm6]	T	C	3.592e^-4	0.84	INTRON luna
X	7333102	X_7333102_INS [dm3] X_7439069_INS [dm6]	T	TGGCTACCAT	3.614e^-4	0.84	INTERGENIC
2L	9491169	2L_9491169_DEL [dm3] 2L_9491169_DEL [dm6]	AA	A	3.618e^-4	0.84	DOWNSTREAM Gdi INTERGENIC
3L	1272070	3L_1272070_SNP [dm3] 3L_1272070_SNP [dm6]	C	A	3.620e^-4	0.84	INTRON CG9134	TF binding site mE1_TFBS_cad
3L	7852405	3L_7852405_SNP [dm3] 3L_7859305_SNP [dm6]	C	T	3.620e^-4	0.84	INTRON Pdp1
2R	18366910	2R_18366910_SNP [dm3] 2R_22479405_SNP [dm6]	G	T	3.620e^-4	0.84	INTRON CG4752	TF binding site mE1_TFBS_cad
2L	17802754	2L_17802754_SNP [dm3] 2L_17802754_SNP [dm6]	G	A	3.623e^-4	0.84	INTRON CadN2
3L	10534419	3L_10534419_SNP [dm3] 3L_10541319_SNP [dm6]	G	T	3.632e^-4	0.84	INTRON A2bp1
X	16130583	X_16130583_SNP [dm3] X_16236550_SNP [dm6]	G	A	3.632e^-4	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	15433478	2L_15433478_SNP [dm3] 2L_15433478_SNP [dm6]	C	T	3.649e^-4	0.84	SYNONYMOUS_CODING CG4161
2L	4124568	2L_4124568_SNP [dm3] 2L_4124568_SNP [dm6]	G	T	3.659e^-4	0.84	DOWNSTREAM Sr-CI INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi
3L	2283378	3L_2283378_SNP [dm3] 3L_2283378_SNP [dm6]	T	A	3.661e^-4	0.84	INTRON MsR2
X	21960398	X_21960398_SNP [dm3] X_22558562_SNP [dm6]	A	G	3.665e^-4	0.84	INTERGENIC	transposable element FlyBase
3L	3572730	3L_3572730_SNP [dm3] 3L_3572730_SNP [dm6]	A	G	3.665e^-4	0.84	INTRON Eip63E
X	16143457	X_16143457_SNP [dm3] X_16249424_SNP [dm6]	A	G	3.671e^-4	0.84	INTERGENIC
2R	15880416	2R_15880416_SNP [dm3] 2R_19992911_SNP [dm6]	C	A	3.678e^-4	0.84	INTERGENIC
2R	16579435	2R_16579435_INS [dm3] 2R_20691930_INS [dm6]	T	TAAGGCAT	3.681e^-4	0.84	UPSTREAM CR44659 & 1 other INTERGENIC
2L	10838847	2L_10838847_SNP [dm3] 2L_10838847_SNP [dm6]	A	G	3.685e^-4	0.84	UTR_3_PRIME CG6700
2L	15348551	2L_15348551_INS [dm3] 2L_15348551_INS [dm6]	T	TATTA	3.686e^-4	0.84	INTERGENIC
3L	9342351	3L_9342351_SNP [dm3] 3L_9349251_SNP [dm6]	A	T	3.689e^-4	0.84	UPSTREAM PGRP-LF DOWNSTREAM PGRP-LC INTERGENIC
2L	6230014	2L_6230014_SNP [dm3] 2L_6230014_SNP [dm6]	G	C	3.691e^-4	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	658994	2L_658994_SNP [dm3] 2L_658994_SNP [dm6]	C	T	3.701e^-4	0.84	INTRON ds	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	22749526	3L_22749526_SNP [dm3] 3L_22756426_SNP [dm6]	T	C	3.703e^-4	0.84	INTRON SPoCk	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13672612	2R_13672612_SNP [dm3] 2R_17785107_SNP [dm6]	C	A	3.705e^-4	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	911878	3L_911878_SNP [dm3] 3L_911878_SNP [dm6]	G	A	3.705e^-4	0.84	UTR_3_PRIME nerfin-1	regulatory region REDfly_CRMs
X	18233188	X_18233188_SNP [dm3] X_18339155_SNP [dm6]	A	C	3.710e^-4	0.84	INTRON CG6123
2L	2590141	2L_2590141_SNP [dm3] 2L_2590141_SNP [dm6]	C	T	3.715e^-4	0.84	INTERGENIC	TF binding site mE1_TFBS_inv
X	17231545	X_17231545_SNP [dm3] X_17337512_SNP [dm6]	G	T	3.726e^-4	0.84	INTERGENIC
X	6965234	X_6965234_DEL [dm3] X_7071201_DEL [dm6]	GGTTCAGTCAACAAAATGGC...	G	3.742e^-4	0.84	INTRON CG4607
3L	3578933	3L_3578933_SNP [dm3] 3L_3578933_SNP [dm6]	A	G	3.745e^-4	0.84	INTRON Eip63E	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	6712890	2L_6712890_SNP [dm3] 2L_6712890_SNP [dm6]	G	A	3.745e^-4	0.84	SYNONYMOUS_CODING AkhR	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14679036	3R_14679036_SNP [dm3] 3R_18853314_SNP [dm6]	A	C	3.747e^-4	0.84	INTERGENIC
X	9735227	X_9735227_SNP [dm3] X_9841194_SNP [dm6]	C	G	3.751e^-4	0.84	INTRON CG32698
2R	10828365	2R_10828365_SNP [dm3] 2R_14940860_SNP [dm6]	G	A	3.752e^-4	0.84	DOWNSTREAM Lap1 INTERGENIC
2R	6892695	2R_6892695_INS [dm3] 2R_11005190_INS [dm6]	A	AA	3.755e^-4	0.84	INTRON luna	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	14592347	X_14592347_SNP [dm3] X_14698314_SNP [dm6]	A	G	3.764e^-4	0.84	INTRON NetB	TF binding site mE1_TFBS_inv
X	14592362	X_14592362_SNP [dm3] X_14698329_SNP [dm6]	A	T	3.764e^-4	0.84	INTRON NetB	TF binding site mE1_TFBS_inv
3L	2534545	3L_2534545_SNP [dm3] 3L_2534545_SNP [dm6]	G	T	3.764e^-4	0.84	INTRON Spn
3R	21674216	3R_21674216_SNP [dm3] 3R_25848494_SNP [dm6]	C	A	3.768e^-4	0.84	UPSTREAM CR45656 DOWNSTREAM CR45657 INTERGENIC
2R	11967143	2R_11967143_INS [dm3] 2R_16079638_INS [dm6]	TT	AACTAAC	3.774e^-4	0.84	UPSTREAM CR43415 INTERGENIC
2R	18540810	2R_18540810_SNP [dm3] 2R_22653305_SNP [dm6]	C	T	3.776e^-4	0.84	SYNONYMOUS_CODING Cyp6d2 UTR_3_PRIME nsr DOWNSTREAM nsr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13446255	2L_13446255_SNP [dm3] 2L_13446255_SNP [dm6]	G	T	3.780e^-4	0.84	UPSTREAM CG9267 INTRON CG42784	TF binding site mE1_TFBS_HSA
2L	12454810	2L_12454810_SNP [dm3] 2L_12454810_SNP [dm6]	T	C	3.788e^-4	0.84	DOWNSTREAM bun EXON CR17024	TF binding site mE1_TFBS_sens
2R	13401680	2R_13401680_SNP [dm3] 2R_17514175_SNP [dm6]	A	C	3.788e^-4	0.84	UPSTREAM CG4853 DOWNSTREAM CG4847 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_h mE1_TFBS_HSA
2R	10324008	2R_10324008_SNP [dm3] 2R_14436503_SNP [dm6]	C	G	3.793e^-4	0.84	INTRON Oaz	TF binding site mE1_TFBS_cad
X	8125679	X_8125679_SNP [dm3] X_8231646_SNP [dm6]	T	C	3.795e^-4	0.84	INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11612100	2R_11612100_DEL [dm3] 2R_15724595_DEL [dm6]	GAATTTTCTGACTTC...	G	3.795e^-4	0.84	INTERGENIC
X	3013519	X_3013519_INS [dm3] X_3119486_INS [dm6]	A	AGGCATATCA	3.799e^-4	0.84	INTRON kirre
2L	12317212	2L_12317212_SNP [dm3] 2L_12317212_SNP [dm6]	G	C	3.799e^-4	0.84	UPSTREAM CR45283 EXON CR45283
2L	7047925	2L_7047925_SNP [dm3] 2L_7047925_SNP [dm6]	T	C	3.802e^-4	0.84	INTRON milt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
2L	8880848	2L_8880848_SNP [dm3] 2L_8880848_SNP [dm6]	A	G	3.803e^-4	0.84	INTERGENIC
2R	8516159	2R_8516159_SNP [dm3] 2R_12628654_SNP [dm6]	T	C	3.814e^-4	0.84	DOWNSTREAM muskelin & 1 other INTERGENIC
3R	20493675	3R_20493675_SNP [dm3] 3R_24667953_SNP [dm6]	C	T	3.815e^-4	0.84	UPSTREAM slo INTRON slo	regulatory region REDfly_CRMs
3R	24484093	3R_24484093_SNP [dm3] 3R_28658371_SNP [dm6]	G	A	3.816e^-4	0.84	INTERGENIC
3R	15516514	3R_15516514_INS [dm3] 3R_19690792_INS [dm6]	A	ACACA	3.818e^-4	0.84	INTRON Naam
2R	11972924	2R_11972924_SNP [dm3] 2R_16085419_SNP [dm6]	A	C	3.824e^-4	0.84	NON_SYNONYMOUS_CODING Dg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	19247388	3L_19247388_SNP [dm3] 3L_19254288_SNP [dm6]	G	A	3.826e^-4	0.84	UTR_3_PRIME mRpL21	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7333007	X_7333007_SNP [dm3] X_7438974_SNP [dm6]	G	A	3.839e^-4	0.84	INTERGENIC
2R	4182570	2R_4182570_SNP [dm3] 2R_8295065_SNP [dm6]	C	A	3.842e^-4	0.84	INTERGENIC
2R	3669758	2R_3669758_SNP [dm3] 2R_7782253_SNP [dm6]	G	C	3.844e^-4	0.84	UTR_5_PRIME CG30497 & 1 other DOWNSTREAM cn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3349821	3L_3349821_SNP [dm3] 3L_3349821_SNP [dm6]	G	T	3.849e^-4	0.84	UPSTREAM kst INTRON kst	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	346923	2L_346923_SNP [dm3] 2L_346923_SNP [dm6]	A	T	3.850e^-4	0.84	UTR_3_PRIME Plc21C DOWNSTREAM Plc21C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15027784	2L_15027784_SNP [dm3] 2L_15027784_SNP [dm6]	T	A	3.859e^-4	0.84	NON_SYNONYMOUS_CODING CG33310 INTRON GABA-B-R1
3L	3098461	3L_3098461_SNP [dm3] 3L_3098461_SNP [dm6]	A	G	3.862e^-4	0.84	DOWNSTREAM tRNA:CR32286 INTRON Cht7
2L	19312933	2L_19312933_SNP [dm3] 2L_19312933_SNP [dm6]	T	A	3.866e^-4	0.84	INTERGENIC	TF binding site mE1_TFBS_cad
2L	17084870	2L_17084870_SNP [dm3] 2L_17084870_SNP [dm6]	T	C	3.880e^-4	0.84	UPSTREAM CR43819 INTERGENIC
3L	9363973	3L_9363973_SNP [dm3] 3L_9370873_SNP [dm6]	A	C	3.897e^-4	0.84	DOWNSTREAM CG4452 & 1 other INTRON Fdxh
X	21948694	X_21948694_SNP [dm3] X_22546858_SNP [dm6]	C	T	3.917e^-4	0.84	UPSTREAM CG17601 INTERGENIC
2R	13657733	2R_13657733_SNP [dm3] 2R_17770228_SNP [dm6]	T	A	3.921e^-4	0.84	UPSTREAM CG18635 DOWNSTREAM CG6362 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	18393516	3R_18393516_SNP [dm3] 3R_22567794_SNP [dm6]	A	T	3.923e^-4	0.84	INTERGENIC
X	8207426	X_8207426_SNP [dm3] X_8313393_SNP [dm6]	G	A	3.923e^-4	0.84	INTRON nAChRalpha3
X	21174457	X_21174457_SNP [dm3] X_21303430_SNP [dm6]	G	A	3.924e^-4	0.84	UPSTREAM CG1718 INTRON CG1718
3R	14550388	3R_14550388_SNP [dm3] 3R_18724666_SNP [dm6]	T	A	3.928e^-4	0.84	DOWNSTREAM CG7714 INTRON Cha
2R	18541333	2R_18541333_SNP [dm3] 2R_22653828_SNP [dm6]	T	G	3.944e^-4	0.84	NON_SYNONYMOUS_CODING Cyp6d2 DOWNSTREAM nsr & 1 other
3L	3572694	3L_3572694_SNP [dm3] 3L_3572694_SNP [dm6]	G	A	3.945e^-4	0.84	INTRON Eip63E
2L	18295289	2L_18295289_SNP [dm3] 2L_18295289_SNP [dm6]	C	T	3.960e^-4	0.84	SYNONYMOUS_CODING CG5790	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	15327425	X_15327425_SNP [dm3] X_15433392_SNP [dm6]	A	T	3.962e^-4	0.84	INTRON Cngl	transposable element FlyBase
X	10852639	X_10852639_SNP [dm3] X_10958606_SNP [dm6]	C	A	3.966e^-4	0.84	INTRON Myo10A
3L	10594619	3L_10594619_SNP [dm3] 3L_10601519_SNP [dm6]	G	T	3.972e^-4	0.84	INTERGENIC
X	4539565	X_4539565_SNP [dm3] X_4645532_SNP [dm6]	G	A	3.975e^-4	0.84	UTR_3_PRIME HLH4C UPSTREAM CG3062	TF binding site mE1_TFBS_chinmo
3R	8443809	3R_8443809_SNP [dm3] 3R_12618087_SNP [dm6]	G	T	3.990e^-4	0.84	DOWNSTREAM CR44942 INTERGENIC
2R	9756665	2R_9756665_DEL [dm3] 2R_13869160_DEL [dm6]	TT	T	3.991e^-4	0.84	INTRON shot
3R	18595619	3R_18595619_SNP [dm3] 3R_22769897_SNP [dm6]	G	A	3.991e^-4	0.84	SYNONYMOUS_CODING CG43093 UPSTREAM CG43092 DOWNSTREAM CG43094 INTRON Usp12-46 & 1 other
3R	13139524	3R_13139524_SNP [dm3] 3R_17313802_SNP [dm6]	G	T	4.005e^-4	0.84	INTERGENIC
3R	22634104	3R_22634104_SNP [dm3] 3R_26808382_SNP [dm6]	T	C	4.006e^-4	0.84	INTRON Tl
3R	22634115	3R_22634115_SNP [dm3] 3R_26808393_SNP [dm6]	C	T	4.006e^-4	0.84	INTRON Tl
3R	25566123	3R_25566123_SNP [dm3] 3R_29740401_SNP [dm6]	G	C	4.016e^-4	0.84	UTR_5_PRIME CG1969 INTRON CG1969	TF binding site BDTNP1_TFBS_dl
X	15489966	X_15489966_SNP [dm3] X_15595933_SNP [dm6]	A	C	4.016e^-4	0.84	INTERGENIC
3R	15540969	3R_15540969_SNP [dm3] 3R_19715247_SNP [dm6]	T	A	4.026e^-4	0.84	UTR_3_PRIME CG34286 DOWNSTREAM CG34286
2R	10328811	2R_10328811_SNP [dm3] 2R_14441306_SNP [dm6]	C	T	4.047e^-4	0.84	INTRON Oaz
X	16089019	X_16089019_SNP [dm3] X_16194986_SNP [dm6]	A	C	4.065e^-4	0.84	INTERGENIC
3R	7727559	3R_7727559_SNP [dm3] 3R_11901837_SNP [dm6]	C	T	4.068e^-4	0.84	SYNONYMOUS_CODING Cad87A
2L	7609695	2L_7609695_SNP [dm3] 2L_7609695_SNP [dm6]	T	C	4.073e^-4	0.84	INTRON CG6739
3R	1160378	3R_1160378_DEL [dm3] 3R_5334656_DEL [dm6]	TCCCGATCCGGATCCT...	T	4.080e^-4	0.84	CODON_DELETION mtd UTR_5_PRIME mtd INTRON mtd
X	21283548	X_21283548_SNP [dm3] X_21412521_SNP [dm6]	T	A	4.082e^-4	0.84	INTERGENIC
X	6455732	X_6455732_SNP [dm3] X_6561699_SNP [dm6]	A	G	4.085e^-4	0.84	SYNONYMOUS_CODING CG34417	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21881108	3R_21881108_INS [dm3] 3R_26055386_INS [dm6]	T	TAGAGT	4.088e^-4	0.84	UTR_5_PRIME Dak1 DOWNSTREAM Sld5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9124518	2R_9124518_DEL [dm3] 2R_13237013_DEL [dm6]	CTCAC	C	4.094e^-4	0.84	UTR_3_PRIME CG4676 DOWNSTREAM CG4679
2L	15348576	2L_15348576_SNP [dm3] 2L_15348576_SNP [dm6]	T	A	4.101e^-4	0.84	INTERGENIC
3L	17285205	3L_17285205_SNP [dm3] 3L_17292105_SNP [dm6]	C	G	4.102e^-4	0.84	INTERGENIC
X	21283288	X_21283288_SNP [dm3] X_21412261_SNP [dm6]	T	G	4.107e^-4	0.84	INTERGENIC
3R	18512405	3R_18512405_SNP [dm3] 3R_22686683_SNP [dm6]	G	A	4.112e^-4	0.84	UPSTREAM CG17625 & 1 other DOWNSTREAM wfs1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA
2L	6999242	2L_6999242_SNP [dm3] 2L_6999242_SNP [dm6]	G	A	4.114e^-4	0.84	INTRON uif
2L	17895741	2L_17895741_SNP [dm3] 2L_17895741_SNP [dm6]	C	T	4.115e^-4	0.84	INTERGENIC
2R	12042658	2R_12042658_SNP [dm3] 2R_16155153_SNP [dm6]	A	T	4.121e^-4	0.84	INTRON lbk	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	11467535	2L_11467535_DEL [dm3] 2L_11467535_DEL [dm6]	AG	A	4.128e^-4	0.84	INTERGENIC
2R	18217242	2R_18217242_DEL [dm3] 2R_22329737_DEL [dm6]	TATTATAATTACAAAA...	T	4.133e^-4	0.84	UTR_3_PRIME T3dh UPSTREAM pgc & 1 other DOWNSTREAM Gp150
2L	7538042	2L_7538042_SNP [dm3] 2L_7538042_SNP [dm6]	G	A	4.134e^-4	0.84	INTRON RapGAP1	TF binding site mE1_TFBS_zfh1
2R	9755535	2R_9755535_SNP [dm3] 2R_13868030_SNP [dm6]	T	G	4.135e^-4	0.84	INTRON shot
2L	6814736	2L_6814736_SNP [dm3] 2L_6814736_SNP [dm6]	A	C	4.136e^-4	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_Kr
2R	18541344	2R_18541344_SNP [dm3] 2R_22653839_SNP [dm6]	G	T	4.145e^-4	0.84	SYNONYMOUS_CODING Cyp6d2 DOWNSTREAM nsr & 1 other
X	8097832	X_8097832_SNP [dm3] X_8203799_SNP [dm6]	C	A	4.151e^-4	0.84	INTRON sdt
3L	2447427	3L_2447427_SNP [dm3] 3L_2447427_SNP [dm6]	C	A	4.162e^-4	0.84	INTRON CG45186	TF binding site BDTNP1_TFBS_dl
3L	12993241	3L_12993241_SNP [dm3] 3L_13000141_SNP [dm6]	A	T	4.164e^-4	0.84	INTERGENIC
3R	22822545	3R_22822545_SNP [dm3] 3R_26996823_SNP [dm6]	C	T	4.166e^-4	0.84	UPSTREAM RYa-R DOWNSTREAM TwdlC INTERGENIC
2L	5099752	2L_5099752_SNP [dm3] 2L_5099752_SNP [dm6]	T	C	4.168e^-4	0.84	SYNONYMOUS_CODING CG8680 DOWNSTREAM CG4230	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
X	17551236	X_17551236_SNP [dm3] X_17657203_SNP [dm6]	A	T	4.175e^-4	0.84	UPSTREAM beta-Spec & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	9494532	2R_9494532_SNP [dm3] 2R_13607027_SNP [dm6]	T	A	4.181e^-4	0.84	INTERGENIC
2L	12593820	2L_12593820_SNP [dm3] 2L_12593820_SNP [dm6]	G	A	4.182e^-4	0.84	UTR_5_PRIME nub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	20302130	2R_20302130_SNP [dm3] 2R_24414607_SNP [dm6]	G	A	4.185e^-4	0.84	UTR_5_PRIME CG45069 UTR_3_PRIME CG45068 UPSTREAM CG45069 DOWNSTREAM prom
3R	19565253	3R_19565253_SNP [dm3] 3R_23739531_SNP [dm6]	C	T	4.197e^-4	0.84	INTRON Hmgcr
X	8727391	X_8727391_SNP [dm3] X_8833358_SNP [dm6]	T	A	4.205e^-4	0.84	INTERGENIC
2L	10204615	2L_10204615_DEL [dm3] 2L_10204615_DEL [dm6]	TT	T	4.205e^-4	0.84	UPSTREAM CG34159 DOWNSTREAM CG5734 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4533286	2R_4533286_SNP [dm3] 2R_8645781_SNP [dm6]	A	C	4.208e^-4	0.84	INTERGENIC
3L	10598410	3L_10598410_SNP [dm3] 3L_10605310_SNP [dm6]	A	G	4.212e^-4	0.84	INTERGENIC
3L	10487448	3L_10487448_SNP [dm3] 3L_10494348_SNP [dm6]	A	T	4.213e^-4	0.84	INTRON A2bp1
2R	18602537	2R_18602537_SNP [dm3] 2R_22715032_SNP [dm6]	T	A	4.215e^-4	0.84	NON_SYNONYMOUS_CODING CG30268	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22628866	3R_22628866_SNP [dm3] 3R_26803144_SNP [dm6]	C	T	4.220e^-4	0.84	INTRON Tl	TF binding site mE1_TFBS_sens
2R	8976070	2R_8976070_SNP [dm3] 2R_13088565_SNP [dm6]	A	G	4.220e^-4	0.84	INTERGENIC
3R	21145559	3R_21145559_DEL [dm3] 3R_25319837_DEL [dm6]	AA	A	4.221e^-4	0.84	INTRON CG10560
2R	8925495	2R_8925495_SNP [dm3] 2R_13037990_SNP [dm6]	C	T	4.231e^-4	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17868306	2R_17868306_SNP [dm3] 2R_21980801_SNP [dm6]	G	T	4.231e^-4	0.84	SYNONYMOUS_CODING Gr58a
3L	8322064	3L_8322064_SNP [dm3] 3L_8328964_SNP [dm6]	A	G	4.249e^-4	0.84	DOWNSTREAM CG34461 INTRON CG34462	TF binding site mE1_TFBS_ttk
3R	6572924	3R_6572924_SNP [dm3] 3R_10747202_SNP [dm6]	T	A	4.257e^-4	0.84	INTRON TkR86C
X	16349046	X_16349046_SNP [dm3] X_16455013_SNP [dm6]	G	T	4.257e^-4	0.84	DOWNSTREAM para & 1 other INTERGENIC
2L	12455385	2L_12455385_SNP [dm3] 2L_12455385_SNP [dm6]	C	T	4.260e^-4	0.84	DOWNSTREAM bun & 1 other INTERGENIC
2L	2267765	2L_2267765_SNP [dm3] 2L_2267765_SNP [dm6]	A	G	4.261e^-4	0.84	DOWNSTREAM CG17242 INTERGENIC
X	12946511	X_12946511_SNP [dm3] X_13052478_SNP [dm6]	C	T	4.261e^-4	0.84	DOWNSTREAM CG12715 INTRON rad
3L	3843168	3L_3843168_SNP [dm3] 3L_3843168_SNP [dm6]	G	A	4.263e^-4	0.84	DOWNSTREAM enc INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	17162977	2L_17162977_SNP [dm3] 2L_17162977_SNP [dm6]	C	G	4.263e^-4	0.84	INTRON beat-IIIa & 1 other
3L	16852069	3L_16852069_SNP [dm3] 3L_16858969_SNP [dm6]	C	T	4.264e^-4	0.84	UPSTREAM sinah DOWNSTREAM sina INTRON Rh4
3L	11303442	3L_11303442_SNP [dm3] 3L_11310342_SNP [dm6]	G	T	4.266e^-4	0.84	INTERGENIC
2L	4534022	2L_4534022_SNP [dm3] 2L_4534022_SNP [dm6]	C	A	4.268e^-4	0.84	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_sens
X	5250361	X_5250361_SNP [dm3] X_5356328_SNP [dm6]	T	C	4.273e^-4	0.84	INTRON SK
2R	9835136	2R_9835136_SNP [dm3] 2R_13947631_SNP [dm6]	G	T	4.275e^-4	0.84	UTR_3_PRIME AGO1	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	10825996	2L_10825996_SNP [dm3] 2L_10825996_SNP [dm6]	G	C	4.278e^-4	0.84	SYNONYMOUS_CODING Nos
3R	21239410	3R_21239410_SNP [dm3] 3R_25413688_SNP [dm6]	G	T	4.279e^-4	0.84	INTRON Fur1
X	16955629	X_16955629_SNP [dm3] X_17061596_SNP [dm6]	A	T	4.280e^-4	0.84	INTRON CG45002
3R	18393493	3R_18393493_SNP [dm3] 3R_22567771_SNP [dm6]	A	T	4.281e^-4	0.84	INTERGENIC
3R	18393496	3R_18393496_SNP [dm3] 3R_22567774_SNP [dm6]	T	G	4.281e^-4	0.84	INTERGENIC
2L	4503437	2L_4503437_SNP [dm3] 2L_4503437_SNP [dm6]	G	A	4.281e^-4	0.84	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8391824	X_8391824_SNP [dm3] X_8497791_SNP [dm6]	C	T	4.284e^-4	0.84	INTRON CG33181	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13183820	2L_13183820_INS [dm3] 2L_13183820_INS [dm6]	A	ATAAATA	4.289e^-4	0.84	DOWNSTREAM CG16974 & 1 other INTRON CG5458	TF binding site mE1_TFBS_cad
X	8391611	X_8391611_SNP [dm3] X_8497578_SNP [dm6]	C	T	4.290e^-4	0.84	INTRON CG33181	TF binding site mE1_TFBS_HSA
2L	177565	2L_177565_SNP [dm3] 2L_177565_SNP [dm6]	C	A	4.290e^-4	0.84	INTRON spen
2L	634442	2L_634442_SNP [dm3] 2L_634442_SNP [dm6]	T	C	4.291e^-4	0.84	INTERGENIC
X	17551076	X_17551076_SNP [dm3] X_17657043_SNP [dm6]	G	A	4.292e^-4	0.84	UPSTREAM beta-Spec & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	9883183	2R_9883183_SNP [dm3] 2R_13995678_SNP [dm6]	C	A	4.305e^-4	0.84	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
X	16429001	X_16429001_SNP [dm3] X_16534968_SNP [dm6]	A	C	4.322e^-4	0.84	INTERGENIC
3R	24465837	3R_24465837_SNP [dm3] 3R_28640115_SNP [dm6]	C	G	4.329e^-4	0.84	INTERGENIC
3L	10535721	3L_10535721_SNP [dm3] 3L_10542621_SNP [dm6]	T	A	4.337e^-4	0.84	INTRON A2bp1
2L	5839476	2L_5839476_SNP [dm3] 2L_5839476_SNP [dm6]	T	A	4.339e^-4	0.84	INTRON TrissinR
3R	14287655	3R_14287655_INS [dm3] 3R_18461933_INS [dm6]	A	ATATAG	4.340e^-4	0.84	INTRON fru
3L	8840049	3L_8840049_SNP [dm3] 3L_8846949_SNP [dm6]	G	A	4.348e^-4	0.84	INTRON dally
X	16349045	X_16349045_SNP [dm3] X_16455012_SNP [dm6]	C	T	4.350e^-4	0.84	DOWNSTREAM para & 1 other INTERGENIC
2L	17126314	2L_17126314_SNP [dm3] 2L_17126314_SNP [dm6]	A	G	4.353e^-4	0.84	UPSTREAM CG31784 INTERGENIC
2R	18335029	2R_18335029_SNP [dm3] 2R_22447524_SNP [dm6]	G	C	4.361e^-4	0.84	INTERGENIC
2L	6230404	2L_6230404_SNP [dm3] 2L_6230404_SNP [dm6]	T	G	4.362e^-4	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	391971	3L_391971_SNP [dm3] 3L_391971_SNP [dm6]	C	A	4.364e^-4	0.84	DOWNSTREAM CR45378 INTRON trh
X	8125631	X_8125631_SNP [dm3] X_8231598_SNP [dm6]	G	A	4.368e^-4	0.84	INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	5686558	3R_5686558_SNP [dm3] 3R_9860836_SNP [dm6]	C	G	4.378e^-4	0.84	INTRON Teh1
2L	12463440	2L_12463440_SNP [dm3] 2L_12463440_SNP [dm6]	A	T	4.389e^-4	0.84	INTRON bun
2L	14526977	2L_14526977_SNP [dm3] 2L_14526977_SNP [dm6]	A	G	4.401e^-4	0.84	INTERGENIC
2R	6084621	2R_6084621_SNP [dm3] 2R_10197116_SNP [dm6]	G	T	4.402e^-4	0.84	DOWNSTREAM CG34221 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11617744	3L_11617744_SNP [dm3] 3L_11624644_SNP [dm6]	C	G	4.404e^-4	0.84	UTR_3_PRIME CG6083 UPSTREAM CG6084
3R	7376169	3R_7376169_SNP [dm3] 3R_11550447_SNP [dm6]	G	A	4.417e^-4	0.84	INTERGENIC
X	7500737	X_7500737_SNP [dm3] X_7606704_SNP [dm6]	T	C	4.417e^-4	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	9650969	2R_9650969_DEL [dm3] 2R_13763464_DEL [dm6]	ACTTAAAA	A	4.423e^-4	0.84	INTERGENIC
2L	7816378	2L_7816378_SNP [dm3] 2L_7816378_SNP [dm6]	G	T	4.425e^-4	0.84	SYNONYMOUS_CODING LanB1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18393481	3R_18393481_DEL [dm3] 3R_22567759_DEL [dm6]	ATCGTAGATC	A	4.436e^-4	0.84	INTERGENIC
2L	11579020	2L_11579020_SNP [dm3] 2L_11579020_SNP [dm6]	T	A	4.438e^-4	0.84	INTERGENIC
3L	467156	3L_467156_DEL [dm3] 3L_467156_DEL [dm6]	TTTTGAT	T	4.446e^-4	0.84	INTRON klar
3R	18190907	3R_18190907_SNP [dm3] 3R_22365185_SNP [dm6]	A	G	4.448e^-4	0.84	SYNONYMOUS_CODING CG5382 DOWNSTREAM CG7071 & 2 others	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10534414	3L_10534414_SNP [dm3] 3L_10541314_SNP [dm6]	T	C	4.448e^-4	0.84	INTRON A2bp1
2R	15946848	2R_15946848_SNP [dm3] 2R_20059343_SNP [dm6]	T	C	4.453e^-4	0.84	DOWNSTREAM CR44631 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	174102	2L_174102_SNP [dm3] 2L_174102_SNP [dm6]	C	A	4.456e^-4	0.84	INTRON spen
2R	9052349	2R_9052349_SNP [dm3] 2R_13164844_SNP [dm6]	G	T	4.456e^-4	0.84	UPSTREAM CG15870 INTRON GLaz
2R	19118996	2R_19118996_INS [dm3] 2R_23231473_INS [dm6]	C	CC	4.461e^-4	0.84	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_cnc
2L	10204647	2L_10204647_SNP [dm3] 2L_10204647_SNP [dm6]	G	A	4.462e^-4	0.84	UPSTREAM CG34159 DOWNSTREAM CG5734 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	1935174	3L_1935174_SNP [dm3] 3L_1935174_SNP [dm6]	A	G	4.466e^-4	0.84	INTRON CG5687
3R	19522619	3R_19522619_SNP [dm3] 3R_23696897_SNP [dm6]	C	T	4.468e^-4	0.84	UPSTREAM CG10252 INTRON prt	TF binding site mE1_TFBS_cad
2L	6720414	2L_6720414_SNP [dm3] 2L_6720414_SNP [dm6]	A	T	4.491e^-4	0.84	UTR_3_PRIME homer
3R	6037496	3R_6037496_SNP [dm3] 3R_10211774_SNP [dm6]	T	C	4.494e^-4	0.84	INTRON Syn & 1 other
2R	16086069	2R_16086069_SNP [dm3] 2R_20198564_SNP [dm6]	C	T	4.496e^-4	0.84	INTERGENIC
3L	13721761	3L_13721761_SNP [dm3] 3L_13728661_SNP [dm6]	A	T	4.506e^-4	0.84	INTRON bru-3
2R	8144613	2R_8144613_SNP [dm3] 2R_12257108_SNP [dm6]	G	A	4.514e^-4	0.84	UPSTREAM Vha36-2 INTERGENIC
X	18953102	X_18953102_SNP [dm3] X_19059069_SNP [dm6]	C	T	4.516e^-4	0.84	INTRON CG14190
2L	9194096	2L_9194096_DEL [dm3] 2L_9194096_DEL [dm6]	TGGGGAT	T	4.526e^-4	0.84	INTRON tai
3L	505585	3L_505585_SNP [dm3] 3L_505585_SNP [dm6]	C	A	4.532e^-4	0.84	INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2R	14020828	2R_14020828_SNP [dm3] 2R_18133323_SNP [dm6]	A	G	4.534e^-4	0.84	INTRON Hsf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3L	15691815	3L_15691815_DEL [dm3] 3L_15698715_DEL [dm6]	TT	T	4.545e^-4	0.84	INTRON comm2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_hkb mE1_TFBS_Trl
3R	5852165	3R_5852165_SNP [dm3] 3R_10026443_SNP [dm6]	C	T	4.555e^-4	0.84	INTRON Mical
X	4804280	X_4804280_SNP [dm3] X_4910247_SNP [dm6]	T	A	4.559e^-4	0.84	INTRON CG32772	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10808787	X_10808787_SNP [dm3] X_10914754_SNP [dm6]	A	G	4.560e^-4	0.84	SYNONYMOUS_CODING CG43901
2L	10838949	2L_10838949_SNP [dm3] 2L_10838949_SNP [dm6]	T	A	4.562e^-4	0.84	UTR_3_PRIME CG6700
X	17934132	X_17934132_SNP [dm3] X_18040099_SNP [dm6]	A	C	4.563e^-4	0.84	START_GAINED Sh UTR_5_PRIME Sh UPSTREAM Sh INTRON Sh
3R	16899505	3R_16899505_SNP [dm3] 3R_21073783_SNP [dm6]	A	G	4.571e^-4	0.84	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	673979	2L_673979_SNP [dm3] 2L_673979_SNP [dm6]	A	G	4.574e^-4	0.84	INTRON ds
3L	4863542	3L_4863542_SNP [dm3] 3L_4863542_SNP [dm6]	G	A	4.595e^-4	0.84	SYNONYMOUS_CODING CG17150
X	16955500	X_16955500_SNP [dm3] X_17061467_SNP [dm6]	G	A	4.602e^-4	0.84	INTRON CG45002
2R	2576230	2R_2576230_SNP [dm3] 2R_6688725_SNP [dm6]	T	C	4.606e^-4	0.84	INTRON CG9422 & 1 other
2L	15027781	2L_15027781_SNP [dm3] 2L_15027781_SNP [dm6]	T	C	4.608e^-4	0.84	SYNONYMOUS_CODING CG33310 INTRON GABA-B-R1
2L	11940181	2L_11940181_SNP [dm3] 2L_11940181_SNP [dm6]	G	T	4.609e^-4	0.84	DOWNSTREAM Or33c INTERGENIC
3R	22526510	3R_22526510_DEL [dm3] 3R_26700788_DEL [dm6]	CGTGGTCTC	C	4.610e^-4	0.84	INTRON amon
2L	10349093	2L_10349093_SNP [dm3] 2L_10349093_SNP [dm6]	A	G	4.612e^-4	0.84	INTRON CG34367
2R	8157053	2R_8157053_SNP [dm3] 2R_12269548_SNP [dm6]	A	T	4.613e^-4	0.84	INTRON Cam
2R	6891970	2R_6891970_SNP [dm3] 2R_11004465_SNP [dm6]	A	G	4.614e^-4	0.84	INTRON luna
X	7261286	X_7261286_SNP [dm3] X_7367253_SNP [dm6]	G	A	4.617e^-4	0.84	INTRON CG1677 & 1 other
2L	12574113	2L_12574113_SNP [dm3] 2L_12574113_SNP [dm6]	T	C	4.617e^-4	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4546245	2L_4546245_SNP [dm3] 2L_4546245_SNP [dm6]	T	A	4.627e^-4	0.84	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7588116	X_7588116_SNP [dm3] X_7694083_SNP [dm6]	G	T	4.637e^-4	0.84	INTRON CHES-1-like	TF binding site mE1_TFBS_Trl
X	4565181	X_4565181_SNP [dm3] X_4671148_SNP [dm6]	A	C	4.639e^-4	0.84	INTRON rap
2R	9700193	2R_9700193_SNP [dm3] 2R_13812688_SNP [dm6]	T	A	4.650e^-4	0.84	INTRON stj
2R	13825660	2R_13825660_SNP [dm3] 2R_17938155_SNP [dm6]	C	A	4.652e^-4	0.84	INTERGENIC
3L	12428263	3L_12428263_SNP [dm3] 3L_12435163_SNP [dm6]	T	C	4.656e^-4	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z
3L	17451642	3L_17451642_SNP [dm3] 3L_17458542_SNP [dm6]	A	C	4.660e^-4	0.84	INTERGENIC
2R	14396702	2R_14396702_SNP [dm3] 2R_18509197_SNP [dm6]	C	G	4.662e^-4	0.84	INTERGENIC
3R	19627146	3R_19627146_SNP [dm3] 3R_23801424_SNP [dm6]	G	C	4.662e^-4	0.84	UTR_3_PRIME mbc DOWNSTREAM CG33111
X	6877713	X_6877713_SNP [dm3] X_6983680_SNP [dm6]	A	T	4.665e^-4	0.84	UTR_5_PRIME ogre UPSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	7333042	X_7333042_SNP [dm3] X_7439009_SNP [dm6]	G	T	4.665e^-4	0.84	INTERGENIC

By genomic position
Variant impact
Gene name

Nuclear_Breadth_Cov phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results