DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.575e^-18)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_P	0.0720353

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_P	5.1782	0.0751

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1714 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	15381018	2L_15381018_SNP [dm3] 2L_15381018_SNP [dm6]	C	G	4.591e^-7	0.861	INTERGENIC
2L	15381006	2L_15381006_SNP [dm3] 2L_15381006_SNP [dm6]	A	G	1.079e^-6	0.993	INTERGENIC
2L	8909454	2L_8909454_SNP [dm3] 2L_8909454_SNP [dm6]	A	C	2.360e^-6	0.993	INTRON CG34398
X	13881123	X_13881123_SNP [dm3] X_13987090_SNP [dm6]	C	T	3.477e^-6	0.993	UPSTREAM mamo INTRON mamo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	19742844	3R_19742844_SNP [dm3] 3R_23917122_SNP [dm6]	T	C	3.875e^-6	0.993	INTRON sba	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	19742848	3R_19742848_SNP [dm3] 3R_23917126_SNP [dm6]	C	T	5.533e^-6	0.993	INTRON sba	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	3421941	3L_3421941_SNP [dm3] 3L_3421941_SNP [dm6]	T	G	5.561e^-6	0.993	INTRON sty
X	21527609	X_21527609_SNP [dm3] X_21656582_SNP [dm6]	T	C	5.674e^-6	0.993	INTERGENIC	transposable element FlyBase
2R	12866665	2R_12866665_SNP [dm3] 2R_16979160_SNP [dm6]	C	T	7.078e^-6	0.993	INTRON Cbp53E
2R	7259228	2R_7259228_SNP [dm3] 2R_11371723_SNP [dm6]	T	G	7.713e^-6	0.993	UPSTREAM Tapdelta INTERGENIC
X	21526601	X_21526601_SNP [dm3] X_21655574_SNP [dm6]	C	T	7.802e^-6	0.993	INTERGENIC	transposable element FlyBase
2L	1300626	2L_1300626_SNP [dm3] 2L_1300626_SNP [dm6]	T	A	8.576e^-6	0.993	INTERGENIC
X	18256461	X_18256461_SNP [dm3] X_18362428_SNP [dm6]	A	T	8.875e^-6	0.993	UTR_3_PRIME CG6106 DOWNSTREAM CG6106
3R	19742845	3R_19742845_SNP [dm3] 3R_23917123_SNP [dm6]	G	A	1.025e^-5	0.993	INTRON sba	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	14656756	2L_14656756_SNP [dm3] 2L_14656756_SNP [dm6]	C	G	1.056e^-5	0.993	INTRON osp
2L	12619482	2L_12619482_SNP [dm3] 2L_12619482_SNP [dm6]	C	T	1.108e^-5	0.993	INTRON Ref2 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	12814623	2R_12814623_INS [dm3] 2R_16927118_INS [dm6]	A	AAA	1.246e^-5	0.993	INTRON Pkc53E
3L	17256022	3L_17256022_SNP [dm3] 3L_17262922_SNP [dm6]	T	C	1.421e^-5	0.993	INTRON CR43870
3R	19742859	3R_19742859_DEL [dm3] 3R_23917137_DEL [dm6]	ATA	A	1.508e^-5	0.993	INTRON sba	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	12619458	2L_12619458_SNP [dm3] 2L_12619458_SNP [dm6]	C	T	1.550e^-5	0.993	INTRON Ref2 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	856437	3L_856437_SNP [dm3] 3L_856437_SNP [dm6]	T	G	1.747e^-5	0.993	NON_SYNONYMOUS_CODING dpr20
3L	3045822	3L_3045822_SNP [dm3] 3L_3045822_SNP [dm6]	C	T	1.803e^-5	0.993	NON_SYNONYMOUS_CODING scramb2	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
3R	19742855	3R_19742855_SNP [dm3] 3R_23917133_SNP [dm6]	G	A	1.949e^-5	0.993	INTRON sba	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	14656807	2L_14656807_SNP [dm3] 2L_14656807_SNP [dm6]	A	C	2.019e^-5	0.993	INTRON osp
3L	8586477	3L_8586477_SNP [dm3] 3L_8593377_SNP [dm6]	A	G	2.052e^-5	0.993	INTRON CG43078
2R	19265034	2R_19265034_SNP [dm3] 2R_23377511_SNP [dm6]	A	G	2.073e^-5	0.993	UPSTREAM Golgin245 DOWNSTREAM CG13551 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9370084	2L_9370084_INS [dm3] 2L_9370084_INS [dm6]	G	GGG	2.087e^-5	0.993	DOWNSTREAM Shawl INTERGENIC
2L	8363433	2L_8363433_DEL [dm3] 2L_8363433_DEL [dm6]	CC	C	2.400e^-5	0.993	UPSTREAM CG7627 DOWNSTREAM RpS13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2L	12612676	2L_12612676_SNP [dm3] 2L_12612676_SNP [dm6]	A	G	2.434e^-5	0.993	INTRON nub & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	1770622	3L_1770622_SNP [dm3] 3L_1770622_SNP [dm6]	T	G	2.455e^-5	0.993	SYNONYMOUS_CODING Dhc62B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	16794374	2L_16794374_SNP [dm3] 2L_16794374_SNP [dm6]	A	G	2.600e^-5	0.993	NON_SYNONYMOUS_CODING Ugt36Ba DOWNSTREAM CG17928	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	3517574	3L_3517574_SNP [dm3] 3L_3517574_SNP [dm6]	C	A	2.618e^-5	0.993	INTRON Eip63E	TF binding site BDTNP1_TFBS_twi
3R	17657429	3R_17657429_SNP [dm3] 3R_21831707_SNP [dm6]	A	T	2.633e^-5	0.993	UPSTREAM Gr93a INTERGENIC
3R	4837211	3R_4837211_SNP [dm3] 3R_9011489_SNP [dm6]	C	A	2.668e^-5	0.993	NON_SYNONYMOUS_CODING CG11984	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9759815	3R_9759815_SNP [dm3] 3R_13934093_SNP [dm6]	G	A	2.826e^-5	0.993	INTERGENIC
X	21526848	X_21526848_SNP [dm3] X_21655821_SNP [dm6]	T	A	2.873e^-5	0.993	INTERGENIC	transposable element FlyBase
X	21527157	X_21527157_SNP [dm3] X_21656130_SNP [dm6]	G	A	3.192e^-5	0.993	INTERGENIC
3L	9191555	3L_9191555_SNP [dm3] 3L_9198455_SNP [dm6]	T	G	3.217e^-5	0.993	INTERGENIC
2L	14656276	2L_14656276_SNP [dm3] 2L_14656276_SNP [dm6]	C	T	3.225e^-5	0.993	INTRON osp
2L	9369837	2L_9369837_SNP [dm3] 2L_9369837_SNP [dm6]	G	A	3.297e^-5	0.993	DOWNSTREAM Shawl INTERGENIC
2L	9370178	2L_9370178_SNP [dm3] 2L_9370178_SNP [dm6]	G	T	3.299e^-5	0.993	DOWNSTREAM Shawl INTERGENIC
3L	6998159	3L_6998159_SNP [dm3] 3L_7005059_SNP [dm6]	T	C	3.388e^-5	0.993	INTRON Mp
X	18255029	X_18255029_SNP [dm3] X_18360996_SNP [dm6]	T	C	3.436e^-5	0.993	INTRON CG6106
2L	12619410	2L_12619410_SNP [dm3] 2L_12619410_SNP [dm6]	A	T	3.515e^-5	0.993	INTRON Ref2 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	13597849	3R_13597849_SNP [dm3] 3R_17772127_SNP [dm6]	G	A	3.571e^-5	0.993	INTRON CG43102
3L	1769914	3L_1769914_SNP [dm3] 3L_1769914_SNP [dm6]	A	G	3.695e^-5	0.993	SYNONYMOUS_CODING Dhc62B	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	15365163	2L_15365163_SNP [dm3] 2L_15365163_SNP [dm6]	T	G	3.975e^-5	0.993	INTERGENIC
2L	15096922	2L_15096922_SNP [dm3] 2L_15096922_SNP [dm6]	A	G	4.178e^-5	0.993	DOWNSTREAM CG15270 INTERGENIC
3R	25103675	3R_25103675_SNP [dm3] 3R_29277953_SNP [dm6]	A	T	4.234e^-5	0.993	UPSTREAM CR45568 INTERGENIC	regulatory region REDfly_CRMs
3R	4446723	3R_4446723_SNP [dm3] 3R_8621001_SNP [dm6]	A	G	4.241e^-5	0.993	INTRON 5-HT2B	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
2L	12610240	2L_12610240_SNP [dm3] 2L_12610240_SNP [dm6]	G	A	4.274e^-5	0.993	DOWNSTREAM Ref2 INTRON nub	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14608968	3L_14608968_SNP [dm3] 3L_14615868_SNP [dm6]	T	A	4.292e^-5	0.993	INTRON shd
2L	16099725	2L_16099725_SNP [dm3] 2L_16099725_SNP [dm6]	C	A	4.374e^-5	0.993	INTERGENIC
2R	17883300	2R_17883300_SNP [dm3] 2R_21995795_SNP [dm6]	C	G	4.453e^-5	0.993	INTRON CG34370
2L	9494729	2L_9494729_SNP [dm3] 2L_9494729_SNP [dm6]	C	T	4.466e^-5	0.993	UTR_5_PRIME Gdi UPSTREAM CG33298	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
2L	7770874	2L_7770874_SNP [dm3] 2L_7770874_SNP [dm6]	C	A	4.505e^-5	0.993	INTRON CG7191
3L	11051684	3L_11051684_SNP [dm3] 3L_11058584_SNP [dm6]	T	C	4.541e^-5	0.993	SYNONYMOUS_CODING CG7888 DOWNSTREAM CG6321	TF binding site mE1_TFBS_cad
3L	8693954	3L_8693954_SNP [dm3] 3L_8700854_SNP [dm6]	T	A	4.630e^-5	0.993	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad
2L	8324226	2L_8324226_SNP [dm3] 2L_8324226_SNP [dm6]	A	G	4.655e^-5	0.993	INTRON CG7781
3R	17657428	3R_17657428_SNP [dm3] 3R_21831706_SNP [dm6]	A	T	4.755e^-5	0.993	UPSTREAM Gr93a INTERGENIC
3R	8129436	3R_8129436_SNP [dm3] 3R_12303714_SNP [dm6]	A	G	4.759e^-5	0.993	DOWNSTREAM svp INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	8325469	2L_8325469_SNP [dm3] 2L_8325469_SNP [dm6]	A	C	4.760e^-5	0.993	UPSTREAM CG7781 INTERGENIC
2L	8911138	2L_8911138_SNP [dm3] 2L_8911138_SNP [dm6]	T	C	5.145e^-5	0.993	INTRON CG34398
X	13000053	X_13000053_SNP [dm3] X_13106020_SNP [dm6]	A	T	5.154e^-5	0.993	INTRON CG43313
3R	24043651	3R_24043651_SNP [dm3] 3R_28217929_SNP [dm6]	C	A	5.218e^-5	0.993	INTRON CG34354
3R	14786726	3R_14786726_SNP [dm3] 3R_18961004_SNP [dm6]	A	G	5.223e^-5	0.993	INTRON CG42613 & 1 other
2L	5662309	2L_5662309_SNP [dm3] 2L_5662309_SNP [dm6]	G	C	5.251e^-5	0.993	UPSTREAM Hsp60C & 1 other INTERGENIC
X	5872349	X_5872349_SNP [dm3] X_5978316_SNP [dm6]	T	A	5.626e^-5	0.993	INTRON Grip
X	20117723	X_20117723_SNP [dm3] X_20246649_SNP [dm6]	A	T	5.639e^-5	0.993	INTRON Peritrophin-A	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	20117730	X_20117730_SNP [dm3] X_20246656_SNP [dm6]	A	G	5.639e^-5	0.993	INTRON Peritrophin-A	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	6427355	X_6427355_SNP [dm3] X_6533322_SNP [dm6]	G	A	5.670e^-5	0.993	UTR_5_PRIME RpL7A UPSTREAM RpL7A & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2L	3402071	2L_3402071_SNP [dm3] 2L_3402071_SNP [dm6]	G	C	5.730e^-5	0.993	INTERGENIC
3R	22741117	3R_22741117_INS [dm3] 3R_26915395_INS [dm6]	T	TTAT	5.749e^-5	0.993	UPSTREAM sda INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18674071	2R_18674071_SNP [dm3] 2R_22786566_SNP [dm6]	A	G	5.787e^-5	0.993	INTRON CG42260
3R	24049661	3R_24049661_SNP [dm3] 3R_28223939_SNP [dm6]	A	G	5.797e^-5	0.993	INTRON CG34354
2L	9369813	2L_9369813_SNP [dm3] 2L_9369813_SNP [dm6]	A	G	5.993e^-5	0.993	DOWNSTREAM Shawl INTERGENIC
2R	12866549	2R_12866549_SNP [dm3] 2R_16979044_SNP [dm6]	T	G	6.082e^-5	0.993	INTRON Cbp53E
2L	8327092	2L_8327092_SNP [dm3] 2L_8327092_SNP [dm6]	C	T	6.083e^-5	0.993	UPSTREAM CG14275 INTERGENIC
X	9249253	X_9249253_SNP [dm3] X_9355220_SNP [dm6]	T	G	6.216e^-5	0.993	INTRON CG34449	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	1284929	2L_1284929_SNP [dm3] 2L_1284929_SNP [dm6]	C	A	6.281e^-5	0.993	INTRON robo3
3R	15135409	3R_15135409_SNP [dm3] 3R_19309687_SNP [dm6]	G	A	6.344e^-5	0.993	INTRON Dl
2L	5910551	2L_5910551_SNP [dm3] 2L_5910551_SNP [dm6]	G	A	6.371e^-5	0.993	SYNONYMOUS_CODING bchs UPSTREAM CG14000	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	26686144	3R_26686144_SNP [dm3] 3R_30860422_SNP [dm6]	C	T	6.578e^-5	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24598230	3R_24598230_SNP [dm3] 3R_28772508_SNP [dm6]	G	A	6.655e^-5	0.993	INTERGENIC
3L	12305285	3L_12305285_SNP [dm3] 3L_12312185_SNP [dm6]	T	C	6.815e^-5	0.993	DOWNSTREAM CG44355 INTERGENIC
2R	19171724	2R_19171724_SNP [dm3] 2R_23284201_SNP [dm6]	T	G	6.945e^-5	0.993	UPSTREAM CG13541 & 1 other INTERGENIC
X	21510820	X_21510820_SNP [dm3] X_21639793_SNP [dm6]	C	A	6.961e^-5	0.993	INTERGENIC	transposable element FlyBase
2L	3048435	2L_3048435_SNP [dm3] 2L_3048435_SNP [dm6]	C	A	7.177e^-5	0.993	SPLICE_SITE_REGION v_2_k05816 UPSTREAM snRNA:U5:23D INTRON v_2_k05816	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	17328661	X_17328661_SNP [dm3] X_17434628_SNP [dm6]	T	C	7.261e^-5	0.993	INTRON CG12994
2R	18408325	2R_18408325_SNP [dm3] 2R_22520820_SNP [dm6]	A	G	7.316e^-5	0.993	INTRON px	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10189837	2L_10189837_SNP [dm3] 2L_10189837_SNP [dm6]	C	T	7.362e^-5	0.993	UTR_3_PRIME CG31874 INTRON Sur	TF binding site mE1_TFBS_cad
2L	10132956	2L_10132956_SNP [dm3] 2L_10132956_SNP [dm6]	C	G	7.406e^-5	0.993	INTRON CG44153
3R	22380910	3R_22380910_SNP [dm3] 3R_26555188_SNP [dm6]	A	T	7.425e^-5	0.993	INTRON scrib
2L	15096964	2L_15096964_SNP [dm3] 2L_15096964_SNP [dm6]	A	G	7.441e^-5	0.993	DOWNSTREAM CG15270 INTERGENIC
2R	11437694	2R_11437694_SNP [dm3] 2R_15550189_SNP [dm6]	A	G	7.523e^-5	0.993	UPSTREAM CG8192 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
X	9248940	X_9248940_SNP [dm3] X_9354907_SNP [dm6]	A	T	7.614e^-5	0.993	UTR_5_PRIME CG34449	TF binding site BDTNP1_TFBS_dl
2L	15367292	2L_15367292_SNP [dm3] 2L_15367292_SNP [dm6]	A	T	7.622e^-5	0.993	INTERGENIC
2L	15381008	2L_15381008_SNP [dm3] 2L_15381008_SNP [dm6]	A	G	7.638e^-5	0.993	INTERGENIC
2R	12866554	2R_12866554_SNP [dm3] 2R_16979049_SNP [dm6]	A	G	7.707e^-5	0.993	INTRON Cbp53E
X	5293054	X_5293054_SNP [dm3] X_5399021_SNP [dm6]	C	T	7.716e^-5	0.993	INTRON SK
X	16785331	X_16785331_SNP [dm3] X_16891298_SNP [dm6]	T	C	7.862e^-5	0.993	DOWNSTREAM CG13002 INTERGENIC
3R	13597845	3R_13597845_SNP [dm3] 3R_17772123_SNP [dm6]	T	G	7.961e^-5	0.993	INTRON CG43102
2R	12607848	2R_12607848_SNP [dm3] 2R_16720343_SNP [dm6]	C	T	8.034e^-5	0.993	INTRON CG30463	TF binding site mE1_TFBS_inv
3R	21241328	3R_21241328_SNP [dm3] 3R_25415606_SNP [dm6]	T	A	8.124e^-5	0.993	INTRON Fur1
2L	4206855	2L_4206855_SNP [dm3] 2L_4206855_SNP [dm6]	A	G	8.215e^-5	0.993	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2L	3401228	2L_3401228_SNP [dm3] 2L_3401228_SNP [dm6]	C	A	8.226e^-5	0.993	INTERGENIC
3L	11811349	3L_11811349_INS [dm3] 3L_11818249_INS [dm6]	A	GCTAGC	8.349e^-5	0.993	SPLICE_SITE_REGION CG5946 INTRON CG5946	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11207777	3R_11207777_SNP [dm3] 3R_15382055_SNP [dm6]	T	G	8.351e^-5	0.993	UTR_3_PRIME h-cup UPSTREAM Rbp INTRON Rbp
3R	23588814	3R_23588814_SNP [dm3] 3R_27763092_SNP [dm6]	C	A	8.369e^-5	0.993	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14658321	2L_14658321_INS [dm3] 2L_14658321_INS [dm6]	A	AA	8.391e^-5	0.993	INTRON osp
3R	24050309	3R_24050309_SNP [dm3] 3R_28224587_SNP [dm6]	A	C	8.457e^-5	0.993	INTRON CG34354
2L	13226616	2L_13226616_SNP [dm3] 2L_13226616_SNP [dm6]	C	T	8.458e^-5	0.993	UPSTREAM CG16813 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D
2L	3048492	2L_3048492_SNP [dm3] 2L_3048492_SNP [dm6]	G	A	8.539e^-5	0.993	UPSTREAM snRNA:U5:23D INTRON v_2_k05816	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	18254260	X_18254260_SNP [dm3] X_18360227_SNP [dm6]	C	T	8.678e^-5	0.993	SYNONYMOUS_CODING CG6106	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2079248	2L_2079248_SNP [dm3] 2L_2079248_SNP [dm6]	C	G	8.729e^-5	0.993	UPSTREAM CG12674 INTRON dpr3
3R	13597844	3R_13597844_SNP [dm3] 3R_17772122_SNP [dm6]	A	T	8.771e^-5	0.993	INTRON CG43102
X	3110104	X_3110104_SNP [dm3] X_3216071_SNP [dm6]	T	G	8.887e^-5	0.993	INTRON dnc
3R	11115222	3R_11115222_SNP [dm3] 3R_15289500_SNP [dm6]	T	C	8.948e^-5	0.993	DOWNSTREAM CG45218 INTRON Tm1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
2L	8327104	2L_8327104_SNP [dm3] 2L_8327104_SNP [dm6]	A	G	8.950e^-5	0.993	UPSTREAM CG14275 INTERGENIC
3R	16589066	3R_16589066_SNP [dm3] 3R_20763344_SNP [dm6]	A	T	8.952e^-5	0.993	UPSTREAM CG31195 INTRON Syp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9758945	3R_9758945_SNP [dm3] 3R_13933223_SNP [dm6]	G	A	8.979e^-5	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	18879919	3R_18879919_SNP [dm3] 3R_23054197_SNP [dm6]	A	T	8.982e^-5	0.993	UPSTREAM p53 DOWNSTREAM CG17119 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	7829695	2R_7829695_SNP [dm3] 2R_11942190_SNP [dm6]	T	A	9.005e^-5	0.993	INTRON CG13188
3R	15899379	3R_15899379_SNP [dm3] 3R_20073657_SNP [dm6]	C	A	9.035e^-5	0.993	INTERGENIC
3R	24104491	3R_24104491_DEL [dm3] 3R_28278769_DEL [dm6]	AA	A	9.047e^-5	0.993	INTERGENIC
3R	14633846	3R_14633846_SNP [dm3] 3R_18808124_SNP [dm6]	T	G	9.080e^-5	0.993	INTRON CG18208
2L	15381095	2L_15381095_SNP [dm3] 2L_15381095_SNP [dm6]	A	G	9.087e^-5	0.993	INTERGENIC
2L	2322414	2L_2322414_INS [dm3] 2L_2322414_INS [dm6]	A	AT	9.088e^-5	0.993	INTRON CG9967 & 1 other
3L	20612202	3L_20612202_SNP [dm3] 3L_20619102_SNP [dm6]	G	A	9.149e^-5	0.993	INTRON knrl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	21241178	3R_21241178_SNP [dm3] 3R_25415456_SNP [dm6]	A	G	9.190e^-5	0.993	INTRON Fur1
2L	8326689	2L_8326689_SNP [dm3] 2L_8326689_SNP [dm6]	C	T	9.198e^-5	0.993	UPSTREAM CG14275 INTERGENIC
3L	10844129	3L_10844129_SNP [dm3] 3L_10851029_SNP [dm6]	A	G	9.228e^-5	0.993	UPSTREAM CR45169 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	7752487	X_7752487_SNP [dm3] X_7858454_SNP [dm6]	G	A	9.260e^-5	0.993	SYNONYMOUS_CODING CG1409
3L	1588952	3L_1588952_SNP [dm3] 3L_1588952_SNP [dm6]	G	T	9.261e^-5	0.993	SPLICE_SITE_REGION CG13917 UTR_5_PRIME CG13917 INTRON CG13917
3R	14726516	3R_14726516_SNP [dm3] 3R_18900794_SNP [dm6]	C	T	9.294e^-5	0.993	NON_SYNONYMOUS_CODING Rh2 DOWNSTREAM CG14294
X	5293046	X_5293046_SNP [dm3] X_5399013_SNP [dm6]	T	C	9.329e^-5	0.993	INTRON SK
X	8637213	X_8637213_DEL [dm3] X_8743180_DEL [dm6]	TTGTGGG	T	9.393e^-5	0.993	INTERGENIC
2R	13796125	2R_13796125_SNP [dm3] 2R_17908620_SNP [dm6]	G	A	9.464e^-5	0.993	INTRON Elk
2R	2400463	2R_2400463_SNP [dm3] 2R_6512958_SNP [dm6]	C	T	9.503e^-5	0.993	INTRON jing	TF binding site BDTNP1_TFBS_dl
3L	11811343	3L_11811343_INS [dm3] 3L_11818243_INS [dm6]	T	TT	9.670e^-5	0.993	INTRON CG5946	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1300650	2L_1300650_SNP [dm3] 2L_1300650_SNP [dm6]	T	C	9.743e^-5	0.993	INTERGENIC
3R	16141749	3R_16141749_SNP [dm3] 3R_20316027_SNP [dm6]	A	C	9.771e^-5	0.993	INTRON CG42668
X	18256742	X_18256742_SNP [dm3] X_18362709_SNP [dm6]	T	C	9.898e^-5	0.993	DOWNSTREAM CG6106 INTERGENIC
2R	6207929	2R_6207929_SNP [dm3] 2R_10320424_SNP [dm6]	T	C	9.929e^-5	0.993	INTRON Ndg & 1 other
3R	18863496	3R_18863496_SNP [dm3] 3R_23037774_SNP [dm6]	G	C	1.006e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	15099732	2L_15099732_SNP [dm3] 2L_15099732_SNP [dm6]	G	T	1.008e^-4	0.993	INTERGENIC
2L	12619295	2L_12619295_DEL [dm3] 2L_12619295_DEL [dm6]	TACAATACATTT...	T	1.008e^-4	0.993	INTRON Ref2 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
2L	15101541	2L_15101541_SNP [dm3] 2L_15101541_SNP [dm6]	A	G	1.008e^-4	0.993	INTERGENIC
2L	15367138	2L_15367138_SNP [dm3] 2L_15367138_SNP [dm6]	T	C	1.014e^-4	0.993	INTERGENIC
2L	1077224	2L_1077224_SNP [dm3] 2L_1077224_SNP [dm6]	G	C	1.017e^-4	0.993	UTR_5_PRIME S UPSTREAM ast INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	802093	2L_802093_SNP [dm3] 2L_802093_SNP [dm6]	G	A	1.018e^-4	0.993	INTERGENIC
3R	12654479	3R_12654479_SNP [dm3] 3R_16828757_SNP [dm6]	G	A	1.024e^-4	0.993	UPSTREAM abd-A INTRON abd-A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad
2L	15096944	2L_15096944_SNP [dm3] 2L_15096944_SNP [dm6]	T	A	1.034e^-4	0.993	DOWNSTREAM CG15270 INTERGENIC
2L	8674438	2L_8674438_SNP [dm3] 2L_8674438_SNP [dm6]	C	T	1.034e^-4	0.993	INTRON Glt	TF binding site mE1_TFBS_cad
X	4557763	X_4557763_SNP [dm3] X_4663730_SNP [dm6]	A	T	1.045e^-4	0.993	INTRON CG3009
2R	13892192	2R_13892192_SNP [dm3] 2R_18004687_SNP [dm6]	G	A	1.047e^-4	0.993	UPSTREAM CR44419 INTRON dpr13
X	6427381	X_6427381_SNP [dm3] X_6533348_SNP [dm6]	A	C	1.073e^-4	0.993	UTR_5_PRIME RpL7A UPSTREAM RpL7A & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2R	19678105	2R_19678105_SNP [dm3] 2R_23790582_SNP [dm6]	G	A	1.076e^-4	0.993	DOWNSTREAM CG15800 INTRON CG9850
2R	5153608	2R_5153608_SNP [dm3] 2R_9266103_SNP [dm6]	C	A	1.076e^-4	0.993	INTRON Pkn
2L	8266414	2L_8266414_SNP [dm3] 2L_8266414_SNP [dm6]	C	G	1.084e^-4	0.993	UPSTREAM Btk29A INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	9542773	2L_9542773_SNP [dm3] 2L_9542773_SNP [dm6]	C	T	1.099e^-4	0.993	UPSTREAM Cpr30B DOWNSTREAM CG17855 INTERGENIC
3R	9840131	3R_9840131_SNP [dm3] 3R_14014409_SNP [dm6]	A	T	1.105e^-4	0.993	INTRON rdx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21283209	3R_21283209_SNP [dm3] 3R_25457487_SNP [dm6]	C	T	1.116e^-4	0.993	INTRON Fur1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	14057476	3R_14057476_SNP [dm3] 3R_18231754_SNP [dm6]	A	G	1.129e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	10458167	X_10458167_SNP [dm3] X_10564134_SNP [dm6]	T	C	1.142e^-4	0.993	INTRON spri
3L	12104165	3L_12104165_SNP [dm3] 3L_12111065_SNP [dm6]	T	G	1.150e^-4	0.993	INTERGENIC
X	8330858	X_8330858_SNP [dm3] X_8436825_SNP [dm6]	A	G	1.152e^-4	0.993	UTR_5_PRIME CG12125 UPSTREAM CG1440 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	20471390	2L_20471390_SNP [dm3] 2L_20471390_SNP [dm6]	G	A	1.153e^-4	0.993	INTRON CR44980
X	8025542	X_8025542_SNP [dm3] X_8131509_SNP [dm6]	T	A	1.156e^-4	0.993	NON_SYNONYMOUS_CODING CG2116 UPSTREAM CG10958 INTRON cyr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_sens
2L	4924624	2L_4924624_SNP [dm3] 2L_4924624_SNP [dm6]	C	A	1.160e^-4	0.993	INTRON hoe1
3R	12653960	3R_12653960_SNP [dm3] 3R_16828238_SNP [dm6]	A	G	1.163e^-4	0.993	UPSTREAM abd-A INTRON abd-A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	4144304	3L_4144304_SNP [dm3] 3L_4144304_SNP [dm6]	A	C	1.164e^-4	0.993	INTRON CG32260
2L	15380933	2L_15380933_SNP [dm3] 2L_15380933_SNP [dm6]	C	A	1.168e^-4	0.993	INTERGENIC
2L	15099846	2L_15099846_SNP [dm3] 2L_15099846_SNP [dm6]	A	G	1.172e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12186215	2L_12186215_SNP [dm3] 2L_12186215_SNP [dm6]	G	C	1.175e^-4	0.993	INTRON aret	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA
2L	12186220	2L_12186220_INS [dm3] 2L_12186220_INS [dm6]	T	TCAACCT	1.175e^-4	0.993	INTRON aret	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA
3L	1388989	3L_1388989_SNP [dm3] 3L_1388989_SNP [dm6]	G	A	1.184e^-4	0.993	INTRON Ptp61F
2L	12668417	2L_12668417_SNP [dm3] 2L_12668417_SNP [dm6]	G	T	1.210e^-4	0.993	SYNONYMOUS_CODING CG15485 INTRON pdm2
3R	14218151	3R_14218151_SNP [dm3] 3R_18392429_SNP [dm6]	C	T	1.212e^-4	0.993	SYNONYMOUS_CODING Vha100-2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19869850	2R_19869850_SNP [dm3] 2R_23982327_SNP [dm6]	G	A	1.212e^-4	0.993	INTRON Sox14	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	3401194	2L_3401194_SNP [dm3] 2L_3401194_SNP [dm6]	A	T	1.227e^-4	0.993	INTERGENIC
X	18255825	X_18255825_SNP [dm3] X_18361792_SNP [dm6]	T	G	1.231e^-4	0.993	UTR_3_PRIME CG6106
2L	12186217	2L_12186217_INS [dm3] 2L_12186217_INS [dm6]	G	GCATTTTTAGGCA...	1.240e^-4	0.993	INTRON aret	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA
3R	16029527	3R_16029527_SNP [dm3] 3R_20203805_SNP [dm6]	T	C	1.242e^-4	0.993	INTERGENIC
X	9249403	X_9249403_SNP [dm3] X_9355370_SNP [dm6]	A	T	1.244e^-4	0.993	INTRON CG34449	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	1602696	X_1602696_SNP [dm3] X_1708663_SNP [dm6]	A	T	1.252e^-4	0.993	DOWNSTREAM CG3795 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	22741113	3R_22741113_SNP [dm3] 3R_26915391_SNP [dm6]	G	T	1.255e^-4	0.993	UPSTREAM sda INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13238007	X_13238007_SNP [dm3] X_13343974_SNP [dm6]	T	A	1.261e^-4	0.993	DOWNSTREAM CR45708 INTERGENIC
3R	22741115	3R_22741115_SNP [dm3] 3R_26915393_SNP [dm6]	G	A	1.263e^-4	0.993	UPSTREAM sda INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18375152	X_18375152_DEL [dm3] X_18481119_DEL [dm6]	AGATATTTTCATATAA...	A	1.264e^-4	0.993	DOWNSTREAM CR45714 INTRON Hayan EXON CR45714
X	20117778	X_20117778_SNP [dm3] X_20246704_SNP [dm6]	C	G	1.267e^-4	0.993	INTRON Peritrophin-A	TF binding site mE1_TFBS_chinmo
3L	17586579	3L_17586579_SNP [dm3] 3L_17593479_SNP [dm6]	T	C	1.274e^-4	0.993	INTRON Eip74EF
2L	6327125	2L_6327125_SNP [dm3] 2L_6327125_SNP [dm6]	G	A	1.277e^-4	0.993	SYNONYMOUS_CODING PDZ-GEF	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	17570	2L_17570_SNP [dm3] 2L_17570_SNP [dm6]	G	A	1.279e^-4	0.993	INTRON l_2_gl
3L	8552171	3L_8552171_SNP [dm3] 3L_8559071_SNP [dm6]	T	C	1.282e^-4	0.993	INTRON rhea
3R	4860471	3R_4860471_SNP [dm3] 3R_9034749_SNP [dm6]	C	A	1.287e^-4	0.993	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	9205909	3L_9205909_INS [dm3] 3L_9212809_INS [dm6]	T	TT	1.304e^-4	0.993	INTRON CG4476
3L	18202621	3L_18202621_SNP [dm3] 3L_18209521_SNP [dm6]	A	T	1.306e^-4	0.993	INTERGENIC
X	15516749	X_15516749_SNP [dm3] X_15622716_SNP [dm6]	T	C	1.318e^-4	0.993	INTRON sog	TF binding site BDTNP1_TFBS_dl
3R	17657535	3R_17657535_DEL [dm3] 3R_21831813_DEL [dm6]	ATT	A	1.334e^-4	0.993	UPSTREAM Gr93a INTERGENIC
2R	628616	2R_628616_SNP [dm3] 2R_4741111_SNP [dm6]	A	C	1.340e^-4	0.993	INTERGENIC	transposable element FlyBase
2L	8342696	2L_8342696_SNP [dm3] 2L_8342696_SNP [dm6]	G	A	1.353e^-4	0.993	UTR_5_PRIME CG14273 DOWNSTREAM CG14274 & 1 other
3L	3037473	3L_3037473_SNP [dm3] 3L_3037473_SNP [dm6]	T	C	1.365e^-4	0.993	UPSTREAM CG2162 INTRON CG2162	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25267551	3R_25267551_SNP [dm3] 3R_29441829_SNP [dm6]	T	C	1.375e^-4	0.993	INTRON Ptp99A
3R	18866379	3R_18866379_SNP [dm3] 3R_23040657_SNP [dm6]	G	A	1.397e^-4	0.993	UPSTREAM CR44226 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	16829347	2R_16829347_DEL [dm3] 2R_20941842_DEL [dm6]	TTG	T	1.401e^-4	0.993	INTERGENIC
2R	16829352	2R_16829352_DEL [dm3] 2R_20941847_DEL [dm6]	GGGTTA	G	1.401e^-4	0.993	INTERGENIC
3L	8427669	3L_8427669_SNP [dm3] 3L_8434569_SNP [dm6]	A	C	1.402e^-4	0.993	SYNONYMOUS_CODING Unr
X	6427327	X_6427327_SNP [dm3] X_6533294_SNP [dm6]	T	G	1.403e^-4	0.993	UTR_5_PRIME RpL7A UPSTREAM RpL7A & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3R	9758972	3R_9758972_SNP [dm3] 3R_13933250_SNP [dm6]	A	C	1.404e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	8906427	2L_8906427_SNP [dm3] 2L_8906427_SNP [dm6]	G	A	1.408e^-4	0.993	INTRON CG34398
2L	7770862	2L_7770862_SNP [dm3] 2L_7770862_SNP [dm6]	T	G	1.422e^-4	0.993	INTRON CG7191
3R	18813002	3R_18813002_INS [dm3] 3R_22987280_INS [dm6]	A	AGCCCA	1.426e^-4	0.993	INTRON Nha2
2L	1077827	2L_1077827_SNP [dm3] 2L_1077827_SNP [dm6]	C	G	1.431e^-4	0.993	UPSTREAM ast & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	12186242	2L_12186242_SNP [dm3] 2L_12186242_SNP [dm6]	T	G	1.432e^-4	0.993	INTRON aret	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA
2L	12186245	2L_12186245_SNP [dm3] 2L_12186245_SNP [dm6]	C	G	1.432e^-4	0.993	INTRON aret	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA
2L	12186247	2L_12186247_SNP [dm3] 2L_12186247_SNP [dm6]	T	A	1.432e^-4	0.993	INTRON aret	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA
2L	3580596	2L_3580596_SNP [dm3] 2L_3580596_SNP [dm6]	C	G	1.435e^-4	0.993	UTR_5_PRIME sob	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	9372679	2L_9372679_SNP [dm3] 2L_9372679_SNP [dm6]	T	C	1.437e^-4	0.993	UTR_3_PRIME Shawl DOWNSTREAM Shawl INTRON CR43865
2L	15101466	2L_15101466_SNP [dm3] 2L_15101466_SNP [dm6]	A	G	1.447e^-4	0.993	INTERGENIC
2L	4458457	2L_4458457_SNP [dm3] 2L_4458457_SNP [dm6]	G	T	1.448e^-4	0.993	UPSTREAM snoRNA:Me18S-C1831 & 1 other DOWNSTREAM mRpL27 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	1589099	3L_1589099_SNP [dm3] 3L_1589099_SNP [dm6]	A	C	1.455e^-4	0.993	INTRON CG13917
3R	22754396	3R_22754396_SNP [dm3] 3R_26928674_SNP [dm6]	T	A	1.458e^-4	0.993	INTRON sda
3R	25852696	3R_25852696_SNP [dm3] 3R_30026974_SNP [dm6]	G	C	1.462e^-4	0.993	UPSTREAM Axn INTRON Axn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26856672	3R_26856672_SNP [dm3] 3R_31030950_SNP [dm6]	G	C	1.465e^-4	0.993	INTERGENIC
3R	14691030	3R_14691030_SNP [dm3] 3R_18865308_SNP [dm6]	G	A	1.467e^-4	0.993	INTERGENIC
2L	15381085	2L_15381085_SNP [dm3] 2L_15381085_SNP [dm6]	G	T	1.480e^-4	0.993	INTERGENIC
3L	18217470	3L_18217470_SNP [dm3] 3L_18224370_SNP [dm6]	T	C	1.486e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	9988331	2L_9988331_SNP [dm3] 2L_9988331_SNP [dm6]	A	G	1.489e^-4	0.993	INTRON bib	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	5606090	X_5606090_SNP [dm3] X_5712057_SNP [dm6]	C	T	1.492e^-4	0.993	INTRON CG33080
2L	14576850	2L_14576850_SNP [dm3] 2L_14576850_SNP [dm6]	G	A	1.502e^-4	0.993	EXON CR44856	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1202390	2L_1202390_SNP [dm3] 2L_1202390_SNP [dm6]	T	C	1.518e^-4	0.993	INTERGENIC
2L	501530	2L_501530_SNP [dm3] 2L_501530_SNP [dm6]	G	T	1.523e^-4	0.993	INTRON ush	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	6867137	2R_6867137_SNP [dm3] 2R_10979632_SNP [dm6]	T	A	1.535e^-4	0.993	UTR_3_PRIME luna
2L	8906501	2L_8906501_SNP [dm3] 2L_8906501_SNP [dm6]	C	T	1.549e^-4	0.993	INTRON CG34398
2R	19870764	2R_19870764_SNP [dm3] 2R_23983241_SNP [dm6]	C	T	1.550e^-4	0.993	INTRON Sox14	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	8137351	2R_8137351_SNP [dm3] 2R_12249846_SNP [dm6]	G	A	1.551e^-4	0.993	INTERGENIC
2L	12619153	2L_12619153_SNP [dm3] 2L_12619153_SNP [dm6]	A	G	1.556e^-4	0.993	INTRON Ref2 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	19856972	2R_19856972_SNP [dm3] 2R_23969449_SNP [dm6]	G	A	1.557e^-4	0.993	SYNONYMOUS_CODING CG10904 UPSTREAM CG3065 DOWNSTREAM or	TF binding site mE1_TFBS_sens
3R	4837047	3R_4837047_SNP [dm3] 3R_9011325_SNP [dm6]	A	T	1.557e^-4	0.993	INTRON CG11984	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13260923	3L_13260923_SNP [dm3] 3L_13267823_SNP [dm6]	T	C	1.567e^-4	0.993	INTRON caps	TF binding site mE1_TFBS_HSA
3L	11313754	3L_11313754_SNP [dm3] 3L_11320654_SNP [dm6]	T	G	1.568e^-4	0.993	UTR_3_PRIME CG6168 DOWNSTREAM CG6168
2L	15381023	2L_15381023_SNP [dm3] 2L_15381023_SNP [dm6]	A	G	1.576e^-4	0.993	INTERGENIC
2R	19862121	2R_19862121_SNP [dm3] 2R_23974598_SNP [dm6]	G	A	1.583e^-4	0.993	SYNONYMOUS_CODING mr
2L	9172546	2L_9172546_SNP [dm3] 2L_9172546_SNP [dm6]	C	A	1.588e^-4	0.993	INTRON tai
3R	22741211	3R_22741211_SNP [dm3] 3R_26915489_SNP [dm6]	T	A	1.589e^-4	0.993	UPSTREAM sda INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7299155	2R_7299155_SNP [dm3] 2R_11411650_SNP [dm6]	A	C	1.593e^-4	0.993	DOWNSTREAM Drip INTRON Drip	TF binding site mE1_TFBS_D
3R	9759823	3R_9759823_SNP [dm3] 3R_13934101_SNP [dm6]	C	G	1.594e^-4	0.993	INTERGENIC
3R	14851132	3R_14851132_SNP [dm3] 3R_19025410_SNP [dm6]	T	G	1.596e^-4	0.993	SYNONYMOUS_CODING CG14285 DOWNSTREAM CG14286 & 1 other
2L	3463431	2L_3463431_SNP [dm3] 2L_3463431_SNP [dm6]	G	A	1.606e^-4	0.993	SYNONYMOUS_CODING msl-2 UPSTREAM mir-4971	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	4412471	2L_4412471_SNP [dm3] 2L_4412471_SNP [dm6]	A	T	1.607e^-4	0.993	DOWNSTREAM CG43055 INTRON CG15431
2L	5812591	2L_5812591_SNP [dm3] 2L_5812591_SNP [dm6]	A	T	1.608e^-4	0.993	DOWNSTREAM CG43307 INTERGENIC
2L	8327094	2L_8327094_SNP [dm3] 2L_8327094_SNP [dm6]	T	C	1.613e^-4	0.993	UPSTREAM CG14275 INTERGENIC
2R	8731790	2R_8731790_SNP [dm3] 2R_12844285_SNP [dm6]	C	G	1.615e^-4	0.993	SYNONYMOUS_CODING Or49b	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1069712	2L_1069712_SNP [dm3] 2L_1069712_SNP [dm6]	A	T	1.621e^-4	0.993	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	20956106	3R_20956106_SNP [dm3] 3R_25130384_SNP [dm6]	A	G	1.635e^-4	0.993	SYNONYMOUS_CODING Clbn UPSTREAM Bili
2L	15381088	2L_15381088_SNP [dm3] 2L_15381088_SNP [dm6]	A	C	1.652e^-4	0.993	INTERGENIC
2L	1315683	2L_1315683_SNP [dm3] 2L_1315683_SNP [dm6]	T	C	1.670e^-4	0.993	INTERGENIC
X	16082928	X_16082928_SNP [dm3] X_16188895_SNP [dm6]	T	C	1.675e^-4	0.993	INTERGENIC
2L	2082827	2L_2082827_SNP [dm3] 2L_2082827_SNP [dm6]	C	G	1.688e^-4	0.993	UPSTREAM CR44055 DOWNSTREAM CR44808 INTRON dpr3
3R	22741125	3R_22741125_INS [dm3] 3R_26915403_INS [dm6]	A	ATA	1.692e^-4	0.993	UPSTREAM sda INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4905495	2L_4905495_SNP [dm3] 2L_4905495_SNP [dm6]	A	T	1.697e^-4	0.993	INTRON CG2837	TF binding site mE1_TFBS_cad
2R	11351945	2R_11351945_SNP [dm3] 2R_15464440_SNP [dm6]	A	T	1.700e^-4	0.993	DOWNSTREAM CG43729 INTRON CG43729
X	16082931	X_16082931_SNP [dm3] X_16188898_SNP [dm6]	C	T	1.705e^-4	0.993	INTERGENIC
X	20117717	X_20117717_SNP [dm3] X_20246643_SNP [dm6]	T	C	1.710e^-4	0.993	INTRON Peritrophin-A	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	23591251	3R_23591251_SNP [dm3] 3R_27765529_SNP [dm6]	C	T	1.718e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	24082110	3R_24082110_SNP [dm3] 3R_28256388_SNP [dm6]	T	C	1.721e^-4	0.993	INTERGENIC
2L	3048493	2L_3048493_SNP [dm3] 2L_3048493_SNP [dm6]	T	A	1.731e^-4	0.993	UPSTREAM snRNA:U5:23D INTRON v_2_k05816	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	3421895	3L_3421895_SNP [dm3] 3L_3421895_SNP [dm6]	T	A	1.732e^-4	0.993	INTRON sty
2R	10534895	2R_10534895_SNP [dm3] 2R_14647390_SNP [dm6]	T	A	1.737e^-4	0.993	INTERGENIC
2L	7771469	2L_7771469_SNP [dm3] 2L_7771469_SNP [dm6]	T	C	1.746e^-4	0.993	SYNONYMOUS_CODING CG7191
2L	3401239	2L_3401239_SNP [dm3] 2L_3401239_SNP [dm6]	C	T	1.750e^-4	0.993	INTERGENIC
2R	19216606	2R_19216606_SNP [dm3] 2R_23329083_SNP [dm6]	A	G	1.763e^-4	0.993	DOWNSTREAM CG30413 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	24169309	3R_24169309_SNP [dm3] 3R_28343587_SNP [dm6]	G	A	1.767e^-4	0.993	SYNONYMOUS_CODING Moca-cyp	TF binding site mE1_TFBS_cad
3R	21241174	3R_21241174_DEL [dm3] 3R_25415452_DEL [dm6]	GC	G	1.769e^-4	0.993	INTRON Fur1
3R	14469745	3R_14469745_SNP [dm3] 3R_18644023_SNP [dm6]	C	T	1.770e^-4	0.993	INTRON qin
2R	12413444	2R_12413444_INS [dm3] 2R_16525939_INS [dm6]	T	TT	1.780e^-4	0.993	INTRON Sema-2a
2R	16829365	2R_16829365_SNP [dm3] 2R_20941860_SNP [dm6]	A	G	1.782e^-4	0.993	INTERGENIC
2L	1844376	2L_1844376_SNP [dm3] 2L_1844376_SNP [dm6]	G	A	1.783e^-4	0.993	NON_SYNONYMOUS_CODING wry	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1769809	3L_1769809_SNP [dm3] 3L_1769809_SNP [dm6]	A	G	1.800e^-4	0.993	SYNONYMOUS_CODING Dhc62B	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	15516750	X_15516750_DEL [dm3] X_15622717_DEL [dm6]	GATGC	G	1.800e^-4	0.993	INTRON sog	TF binding site BDTNP1_TFBS_dl
2L	9473175	2L_9473175_SNP [dm3] 2L_9473175_SNP [dm6]	T	G	1.805e^-4	0.993	INTERGENIC
2L	1281566	2L_1281566_SNP [dm3] 2L_1281566_SNP [dm6]	T	G	1.806e^-4	0.993	INTRON robo3
3R	17657539	3R_17657539_SNP [dm3] 3R_21831817_SNP [dm6]	T	A	1.808e^-4	0.993	UPSTREAM Gr93a INTERGENIC
3R	12785536	3R_12785536_SNP [dm3] 3R_16959814_SNP [dm6]	C	T	1.809e^-4	0.993	INTRON Abd-B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12400608	2R_12400608_SNP [dm3] 2R_16513103_SNP [dm6]	G	A	1.810e^-4	0.993	INTRON Sema-2a
3L	1589186	3L_1589186_SNP [dm3] 3L_1589186_SNP [dm6]	G	T	1.814e^-4	0.993	INTRON CG13917
3L	1590897	3L_1590897_SNP [dm3] 3L_1590897_SNP [dm6]	T	C	1.816e^-4	0.993	INTRON CG13917
2L	7111158	2L_7111158_SNP [dm3] 2L_7111158_SNP [dm6]	G	T	1.828e^-4	0.993	INTRON Pvf3
3R	22646372	3R_22646372_SNP [dm3] 3R_26820650_SNP [dm6]	T	C	1.833e^-4	0.993	INTRON Tl
X	6427387	X_6427387_SNP [dm3] X_6533354_SNP [dm6]	T	C	1.836e^-4	0.993	UPSTREAM RpL7A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3R	21513695	3R_21513695_SNP [dm3] 3R_25687973_SNP [dm6]	A	G	1.846e^-4	0.993	UPSTREAM CLS INTERGENIC
2L	15364248	2L_15364248_SNP [dm3] 2L_15364248_SNP [dm6]	C	G	1.850e^-4	0.993	INTERGENIC
2L	7115254	2L_7115254_SNP [dm3] 2L_7115254_SNP [dm6]	T	A	1.857e^-4	0.993	INTRON Pvf3
3R	14992481	3R_14992481_SNP [dm3] 3R_19166759_SNP [dm6]	A	T	1.858e^-4	0.993	INTRON sqz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	8157637	2R_8157637_SNP [dm3] 2R_12270132_SNP [dm6]	A	T	1.865e^-4	0.993	INTRON Cam
2R	16756193	2R_16756193_SNP [dm3] 2R_20868688_SNP [dm6]	C	A	1.866e^-4	0.993	UTR_3_PRIME IM4 DOWNSTREAM IM4
2L	9536527	2L_9536527_SNP [dm3] 2L_9536527_SNP [dm6]	A	G	1.868e^-4	0.993	SYNONYMOUS_CODING Oatp30B	TF binding site mE1_TFBS_cad
3R	4823689	3R_4823689_SNP [dm3] 3R_8997967_SNP [dm6]	G	A	1.878e^-4	0.993	INTRON CG31100 & 1 other
2L	9542771	2L_9542771_SNP [dm3] 2L_9542771_SNP [dm6]	G	A	1.897e^-4	0.993	UPSTREAM Cpr30B DOWNSTREAM CG17855 INTERGENIC
2R	11285592	2R_11285592_SNP [dm3] 2R_15398087_SNP [dm6]	A	C	1.899e^-4	0.993	INTERGENIC
3L	3037797	3L_3037797_SNP [dm3] 3L_3037797_SNP [dm6]	T	C	1.905e^-4	0.993	SYNONYMOUS_CODING CG2162 UPSTREAM CG2162	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	1203053	X_1203053_SNP [dm3] X_1309020_SNP [dm6]	C	A	1.907e^-4	0.993	UPSTREAM DAAM INTRON DAAM
3R	26686103	3R_26686103_SNP [dm3] 3R_30860381_SNP [dm6]	A	G	1.922e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3023759	3L_3023759_SNP [dm3] 3L_3023759_SNP [dm6]	G	T	1.933e^-4	0.993	DOWNSTREAM aly INTERGENIC
3L	1589098	3L_1589098_SNP [dm3] 3L_1589098_SNP [dm6]	T	G	1.942e^-4	0.993	INTRON CG13917
2L	8370779	2L_8370779_SNP [dm3] 2L_8370779_SNP [dm6]	A	G	1.944e^-4	0.993	START_GAINED CG17292 UTR_5_PRIME CG17292 UPSTREAM CR45341 DOWNSTREAM Pp2A-29B INTRON CG17292
X	7885677	X_7885677_SNP [dm3] X_7991644_SNP [dm6]	T	C	1.946e^-4	0.993	INTERGENIC
2L	6205968	2L_6205968_SNP [dm3] 2L_6205968_SNP [dm6]	T	G	1.957e^-4	0.993	INTRON CG34380	TF binding site BDTNP1_TFBS_da
2R	3314627	2R_3314627_SNP [dm3] 2R_7427122_SNP [dm6]	G	T	1.958e^-4	0.993	DOWNSTREAM CG11145 INTRON so	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7885681	X_7885681_DEL [dm3] X_7991648_DEL [dm6]	TACATA	T	1.959e^-4	0.993	INTERGENIC
3R	14140769	3R_14140769_SNP [dm3] 3R_18315047_SNP [dm6]	A	T	1.965e^-4	0.993	UPSTREAM PKD INTERGENIC
2L	3463855	2L_3463855_SNP [dm3] 2L_3463855_SNP [dm6]	C	T	1.978e^-4	0.993	SYNONYMOUS_CODING msl-2 UPSTREAM mir-4971	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	3037993	3L_3037993_SNP [dm3] 3L_3037993_SNP [dm6]	T	A	1.982e^-4	0.993	UPSTREAM CG2162 INTRON CG2162	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	14470809	3R_14470809_SNP [dm3] 3R_18645087_SNP [dm6]	A	G	1.994e^-4	0.993	NON_SYNONYMOUS_CODING qin
3L	12159316	3L_12159316_SNP [dm3] 3L_12166216_SNP [dm6]	T	A	1.994e^-4	0.993	SYNONYMOUS_CODING Rh7	TF binding site mE1_TFBS_cad
2R	18408299	2R_18408299_SNP [dm3] 2R_22520794_SNP [dm6]	A	T	1.994e^-4	0.993	INTRON px	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18410911	2R_18410911_SNP [dm3] 2R_22523406_SNP [dm6]	A	T	2.002e^-4	0.993	INTRON px	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	8330993	X_8330993_SNP [dm3] X_8436960_SNP [dm6]	A	T	2.014e^-4	0.993	UTR_5_PRIME CG12125 UPSTREAM CG1440 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	2078458	2L_2078458_SNP [dm3] 2L_2078458_SNP [dm6]	T	A	2.016e^-4	0.993	INTRON dpr3
2L	9025487	2L_9025487_SNP [dm3] 2L_9025487_SNP [dm6]	T	C	2.031e^-4	0.993	UPSTREAM CG9582 DOWNSTREAM CR44352 INTRON CG9582
3L	7254016	3L_7254016_SNP [dm3] 3L_7260916_SNP [dm6]	A	G	2.033e^-4	0.993	INTRON CG14830
2L	15381110	2L_15381110_SNP [dm3] 2L_15381110_SNP [dm6]	G	T	2.034e^-4	0.993	INTERGENIC
2L	8908461	2L_8908461_SNP [dm3] 2L_8908461_SNP [dm6]	G	A	2.037e^-4	0.993	INTRON CG34398
2R	16756273	2R_16756273_DEL [dm3] 2R_20868768_DEL [dm6]	ACTA	GT	2.038e^-4	0.993	UTR_3_PRIME IM4 DOWNSTREAM IM4
2L	8906431	2L_8906431_SNP [dm3] 2L_8906431_SNP [dm6]	G	T	2.044e^-4	0.993	INTRON CG34398
3L	1589053	3L_1589053_SNP [dm3] 3L_1589053_SNP [dm6]	T	A	2.046e^-4	0.993	INTRON CG13917
3R	22741120	3R_22741120_SNP [dm3] 3R_26915398_SNP [dm6]	G	C	2.049e^-4	0.993	UPSTREAM sda INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12619313	2L_12619313_DEL [dm3] 2L_12619313_DEL [dm6]	TATGGGGTTC	A	2.050e^-4	0.993	INTRON Ref2 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
3R	16141702	3R_16141702_SNP [dm3] 3R_20315980_SNP [dm6]	G	A	2.057e^-4	0.993	INTRON CG42668
2L	6516093	2L_6516093_SNP [dm3] 2L_6516093_SNP [dm6]	C	T	2.064e^-4	0.993	INTRON CG31637
2L	155691	2L_155691_SNP [dm3] 2L_155691_SNP [dm6]	C	G	2.066e^-4	0.993	SYNONYMOUS_CODING CG11455 UPSTREAM CG3436 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
X	8539953	X_8539953_SNP [dm3] X_8645920_SNP [dm6]	A	G	2.070e^-4	0.993	INTRON oc
2L	8587124	2L_8587124_SNP [dm3] 2L_8587124_SNP [dm6]	G	A	2.072e^-4	0.993	INTRON Sema-1a
X	18255020	X_18255020_SNP [dm3] X_18360987_SNP [dm6]	A	G	2.082e^-4	0.993	INTRON CG6106
2L	9274844	2L_9274844_SNP [dm3] 2L_9274844_SNP [dm6]	T	C	2.086e^-4	0.993	INTRON Ggamma30A
2L	9971952	2L_9971952_SNP [dm3] 2L_9971952_SNP [dm6]	A	G	2.087e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	21114882	X_21114882_DEL [dm3] X_21243855_DEL [dm6]	ATGTA	A	2.100e^-4	0.993	INTRON CG32521
X	1223367	X_1223367_DEL [dm3] X_1329334_DEL [dm6]	AA	A	2.109e^-4	0.993	UTR_3_PRIME fs_1_N DOWNSTREAM CG11409	TF binding site mE1_TFBS_chinmo
2L	12619310	2L_12619310_SNP [dm3] 2L_12619310_SNP [dm6]	T	A	2.139e^-4	0.993	INTRON Ref2 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
2L	12619184	2L_12619184_SNP [dm3] 2L_12619184_SNP [dm6]	T	C	2.141e^-4	0.993	INTRON Ref2 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	1588011	3L_1588011_SNP [dm3] 3L_1588011_SNP [dm6]	T	A	2.146e^-4	0.993	INTRON CG13917
2L	9536497	2L_9536497_SNP [dm3] 2L_9536497_SNP [dm6]	T	C	2.147e^-4	0.993	SYNONYMOUS_CODING Oatp30B	TF binding site mE1_TFBS_cad
X	9226794	X_9226794_SNP [dm3] X_9332761_SNP [dm6]	G	T	2.159e^-4	0.993	INTRON CG34449
2R	10534878	2R_10534878_SNP [dm3] 2R_14647373_SNP [dm6]	C	T	2.163e^-4	0.993	INTERGENIC
3R	16084018	3R_16084018_SNP [dm3] 3R_20258296_SNP [dm6]	G	A	2.174e^-4	0.993	INTRON cic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	9759808	3R_9759808_INS [dm3] 3R_13934086_INS [dm6]	C	CC	2.180e^-4	0.993	INTERGENIC
2L	4762874	2L_4762874_SNP [dm3] 2L_4762874_SNP [dm6]	C	T	2.187e^-4	0.993	UPSTREAM CG42523 INTRON CG15630
3R	23588913	3R_23588913_SNP [dm3] 3R_27763191_SNP [dm6]	T	G	2.188e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_cad
3L	13260918	3L_13260918_SNP [dm3] 3L_13267818_SNP [dm6]	C	G	2.189e^-4	0.993	INTRON caps	TF binding site mE1_TFBS_HSA
X	20117805	X_20117805_SNP [dm3] X_20246731_SNP [dm6]	C	A	2.194e^-4	0.993	INTRON Peritrophin-A	TF binding site mE1_TFBS_chinmo
2L	2079555	2L_2079555_SNP [dm3] 2L_2079555_SNP [dm6]	T	G	2.203e^-4	0.993	UPSTREAM CG12674 INTRON dpr3
3R	22741128	3R_22741128_SNP [dm3] 3R_26915406_SNP [dm6]	T	C	2.212e^-4	0.993	UPSTREAM sda INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1588956	3L_1588956_SNP [dm3] 3L_1588956_SNP [dm6]	A	T	2.215e^-4	0.993	SPLICE_SITE_REGION CG13917 INTRON CG13917
2L	13820015	2L_13820015_SNP [dm3] 2L_13820015_SNP [dm6]	A	T	2.222e^-4	0.993	DOWNSTREAM Sos INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	9971963	2L_9971963_SNP [dm3] 2L_9971963_SNP [dm6]	T	G	2.222e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	10088178	3R_10088178_SNP [dm3] 3R_14262456_SNP [dm6]	G	A	2.231e^-4	0.993	UTR_5_PRIME CG14839 UPSTREAM CG14841 DOWNSTREAM trx	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4755844	3L_4755844_SNP [dm3] 3L_4755844_SNP [dm6]	A	T	2.232e^-4	0.993	INTRON RhoGEF64C EXON CR43881
3L	14005848	3L_14005848_SNP [dm3] 3L_14012748_SNP [dm6]	A	G	2.242e^-4	0.993	SYNONYMOUS_CODING upSET	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9538630	2L_9538630_SNP [dm3] 2L_9538630_SNP [dm6]	G	T	2.249e^-4	0.993	NON_SYNONYMOUS_CODING Oatp30B
2L	9988116	2L_9988116_SNP [dm3] 2L_9988116_SNP [dm6]	A	T	2.257e^-4	0.993	INTRON bib	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7581176	3L_7581176_SNP [dm3] 3L_7588076_SNP [dm6]	A	C	2.257e^-4	0.993	DOWNSTREAM CG14838 & 1 other INTERGENIC
2L	9971961	2L_9971961_SNP [dm3] 2L_9971961_SNP [dm6]	G	A	2.271e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	21526602	X_21526602_SNP [dm3] X_21655575_SNP [dm6]	T	G	2.273e^-4	0.993	INTERGENIC	transposable element FlyBase
3L	1516707	3L_1516707_SNP [dm3] 3L_1516707_SNP [dm6]	G	A	2.280e^-4	0.993	UPSTREAM Psa INTRON Psa & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	20507080	2L_20507080_SNP [dm3] 2L_20507080_SNP [dm6]	C	A	2.282e^-4	0.993	INTERGENIC
2L	8719317	2L_8719317_SNP [dm3] 2L_8719317_SNP [dm6]	T	G	2.282e^-4	0.993	INTRON raw
2L	3048468	2L_3048468_SNP [dm3] 2L_3048468_SNP [dm6]	T	C	2.283e^-4	0.993	UPSTREAM snRNA:U5:23D INTRON v_2_k05816	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	16685291	2R_16685291_SNP [dm3] 2R_20797786_SNP [dm6]	C	T	2.300e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_cad
3R	18863225	3R_18863225_SNP [dm3] 3R_23037503_SNP [dm6]	T	C	2.302e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	12653989	3R_12653989_SNP [dm3] 3R_16828267_SNP [dm6]	A	T	2.305e^-4	0.993	UPSTREAM abd-A INTRON abd-A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	13081727	2L_13081727_SNP [dm3] 2L_13081727_SNP [dm6]	C	A	2.308e^-4	0.993	INTERGENIC
3L	11048400	3L_11048400_SNP [dm3] 3L_11055300_SNP [dm6]	C	T	2.313e^-4	0.993	UPSTREAM CG7888 INTRON CG7888
2R	18394892	2R_18394892_SNP [dm3] 2R_22507387_SNP [dm6]	C	T	2.315e^-4	0.993	INTRON px	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26697197	3R_26697197_SNP [dm3] 3R_30871475_SNP [dm6]	G	A	2.316e^-4	0.993	SYNONYMOUS_CODING CG15545	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1771773	3L_1771773_SNP [dm3] 3L_1771773_SNP [dm6]	C	T	2.326e^-4	0.993	UPSTREAM Dhc62B DOWNSTREAM CG13933 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	1588998	3L_1588998_SNP [dm3] 3L_1588998_SNP [dm6]	C	G	2.328e^-4	0.993	INTRON CG13917
3L	11219681	3L_11219681_SNP [dm3] 3L_11226581_SNP [dm6]	T	G	2.348e^-4	0.993	INTRON CG42671	TF binding site mE1_TFBS_cad
X	10910837	X_10910837_SNP [dm3] X_11016804_SNP [dm6]	A	T	2.363e^-4	0.993	INTRON CG42339
2R	11533375	2R_11533375_SNP [dm3] 2R_15645870_SNP [dm6]	T	C	2.370e^-4	0.993	INTRON CG42524
2R	19108117	2R_19108117_SNP [dm3] 2R_23220594_SNP [dm6]	G	A	2.389e^-4	0.993	INTERGENIC
2L	9971970	2L_9971970_SNP [dm3] 2L_9971970_SNP [dm6]	A	G	2.399e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	4969824	3R_4969824_SNP [dm3] 3R_9144102_SNP [dm6]	A	G	2.413e^-4	0.993	INTRON pum	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2830181	2R_2830181_SNP [dm3] 2R_6942676_SNP [dm6]	A	C	2.413e^-4	0.993	DOWNSTREAM CheB42b INTRON mim
3R	19998171	3R_19998171_SNP [dm3] 3R_24172449_SNP [dm6]	T	A	2.420e^-4	0.993	UPSTREAM CG13606 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	15000173	3L_15000173_SNP [dm3] 3L_15007073_SNP [dm6]	C	T	2.423e^-4	0.993	INTRON Reck
3L	15000178	3L_15000178_SNP [dm3] 3L_15007078_SNP [dm6]	A	C	2.423e^-4	0.993	INTRON Reck
2R	19216941	2R_19216941_INS [dm3] 2R_23329418_INS [dm6]	C	CC	2.438e^-4	0.993	DOWNSTREAM CG30413 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	15381041	2L_15381041_SNP [dm3] 2L_15381041_SNP [dm6]	G	A	2.445e^-4	0.993	INTERGENIC
2R	12141844	2R_12141844_SNP [dm3] 2R_16254339_SNP [dm6]	A	T	2.445e^-4	0.993	INTRON CngA
3R	8669747	3R_8669747_DEL [dm3] 3R_12844025_DEL [dm6]	AC	T	2.447e^-4	0.993	INTRON beat-Va
2L	4223414	2L_4223414_SNP [dm3] 2L_4223414_SNP [dm6]	G	A	2.450e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18038085	2R_18038085_SNP [dm3] 2R_22150580_SNP [dm6]	G	A	2.450e^-4	0.993	INTRON a
2R	11983509	2R_11983509_INS [dm3] 2R_16096004_INS [dm6]	T	TTCTTGT	2.455e^-4	0.993	INTRON Dg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2L	7908845	2L_7908845_SNP [dm3] 2L_7908845_SNP [dm6]	G	T	2.456e^-4	0.993	INTRON Snoo
3R	25852653	3R_25852653_SNP [dm3] 3R_30026931_SNP [dm6]	T	C	2.456e^-4	0.993	UPSTREAM Axn INTRON Axn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24445804	3R_24445804_SNP [dm3] 3R_28620082_SNP [dm6]	C	T	2.464e^-4	0.993	INTRON CG10011
3L	8373696	3L_8373696_SNP [dm3] 3L_8380596_SNP [dm6]	G	T	2.467e^-4	0.993	DOWNSTREAM ImpE1 INTRON ImpE1
2L	4081644	2L_4081644_SNP [dm3] 2L_4081644_SNP [dm6]	A	T	2.474e^-4	0.993	INTRON ed	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19216296	2R_19216296_SNP [dm3] 2R_23328773_SNP [dm6]	C	G	2.477e^-4	0.993	DOWNSTREAM CG30413 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16182861	3L_16182861_SNP [dm3] 3L_16189761_SNP [dm6]	A	C	2.482e^-4	0.993	INTERGENIC
2R	20208651	2R_20208651_SNP [dm3] 2R_24321128_SNP [dm6]	A	G	2.495e^-4	0.993	INTERGENIC
2R	17528682	2R_17528682_SNP [dm3] 2R_21641177_SNP [dm6]	C	A	2.495e^-4	0.993	INTERGENIC
2L	10447111	2L_10447111_SNP [dm3] 2L_10447111_SNP [dm6]	C	G	2.500e^-4	0.993	UPSTREAM loh INTRON loh
2R	2446231	2R_2446231_SNP [dm3] 2R_6558726_SNP [dm6]	C	T	2.509e^-4	0.993	INTRON jing
2L	12971739	2L_12971739_SNP [dm3] 2L_12971739_SNP [dm6]	T	G	2.525e^-4	0.993	INTERGENIC
3R	23112125	3R_23112125_SNP [dm3] 3R_27286403_SNP [dm6]	G	A	2.529e^-4	0.993	SYNONYMOUS_CODING CG3368 DOWNSTREAM bigmax	TF binding site mE1_TFBS_chinmo
3R	25042873	3R_25042873_SNP [dm3] 3R_29217151_SNP [dm6]	C	A	2.534e^-4	0.993	UPSTREAM mir-996 INTRON CR31044 EXON CR31044	TF binding site mE1_TFBS_sens
2L	10175190	2L_10175190_INS [dm3] 2L_10175190_INS [dm6]	G	GGTCCATAG	2.536e^-4	0.993	INTRON CG44153
3R	22741116	3R_22741116_SNP [dm3] 3R_26915394_SNP [dm6]	C	T	2.541e^-4	0.993	UPSTREAM sda INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4294795	3L_4294795_SNP [dm3] 3L_4294795_SNP [dm6]	C	T	2.548e^-4	0.993	SYNONYMOUS_CODING dyl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	6329776	X_6329776_SNP [dm3] X_6435743_SNP [dm6]	C	T	2.552e^-4	0.993	INTRON CG42340	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23597738	3R_23597738_DEL [dm3] 3R_27772016_DEL [dm6]	TC	T	2.554e^-4	0.993	INTRON CG34353	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16756151	2R_16756151_SNP [dm3] 2R_20868646_SNP [dm6]	A	G	2.558e^-4	0.993	UTR_3_PRIME IM4 DOWNSTREAM IM4
2R	16756269	2R_16756269_SNP [dm3] 2R_20868764_SNP [dm6]	G	T	2.560e^-4	0.993	UTR_3_PRIME IM4 DOWNSTREAM IM4
2R	15100008	2R_15100008_SNP [dm3] 2R_19212503_SNP [dm6]	A	G	2.574e^-4	0.993	INTRON hppy	TF binding site mE1_TFBS_inv
3R	3055753	3R_3055753_SNP [dm3] 3R_7230031_SNP [dm6]	C	A	2.579e^-4	0.993	INTRON CG14608
2L	2088089	2L_2088089_SNP [dm3] 2L_2088089_SNP [dm6]	T	C	2.586e^-4	0.993	INTRON dpr3
X	6302741	X_6302741_SNP [dm3] X_6408708_SNP [dm6]	C	G	2.586e^-4	0.993	INTERGENIC
2L	8586990	2L_8586990_SNP [dm3] 2L_8586990_SNP [dm6]	C	A	2.587e^-4	0.993	INTRON Sema-1a
2L	3401630	2L_3401630_SNP [dm3] 2L_3401630_SNP [dm6]	A	T	2.596e^-4	0.993	INTERGENIC
X	12092140	X_12092140_SNP [dm3] X_12198107_SNP [dm6]	C	T	2.599e^-4	0.993	INTRON Ten-a
3R	23617255	3R_23617255_SNP [dm3] 3R_27791533_SNP [dm6]	C	T	2.605e^-4	0.993	INTRON CG34353	TF binding site mE1_TFBS_chinmo
3L	15858021	3L_15858021_SNP [dm3] 3L_15864921_SNP [dm6]	G	T	2.606e^-4	0.993	INTRON pHCl
3L	8124679	3L_8124679_SNP [dm3] 3L_8131579_SNP [dm6]	C	T	2.615e^-4	0.993	UTR_3_PRIME CdsA & 1 other
2L	9971964	2L_9971964_INS [dm3] 2L_9971964_INS [dm6]	C	CTTAAACTGT	2.615e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	18878124	3R_18878124_SNP [dm3] 3R_23052402_SNP [dm6]	C	T	2.645e^-4	0.993	SYNONYMOUS_CODING Gr94a INTRON p53	TF binding site mE1_TFBS_sens
3L	14201253	3L_14201253_SNP [dm3] 3L_14208153_SNP [dm6]	A	T	2.657e^-4	0.993	INTRON nuf
3R	14990869	3R_14990869_SNP [dm3] 3R_19165147_SNP [dm6]	G	C	2.658e^-4	0.993	INTRON sqz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	18289092	3L_18289092_SNP [dm3] 3L_18295992_SNP [dm6]	G	A	2.659e^-4	0.993	DOWNSTREAM CR43306 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	8793855	2L_8793855_SNP [dm3] 2L_8793855_SNP [dm6]	G	A	2.670e^-4	0.993	INTERGENIC
2R	11898577	2R_11898577_SNP [dm3] 2R_16011072_SNP [dm6]	C	T	2.670e^-4	0.993	SYNONYMOUS_CODING CG8388 UPSTREAM CG8389 INTRON CG8389	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	8025181	X_8025181_SNP [dm3] X_8131148_SNP [dm6]	T	C	2.672e^-4	0.993	SYNONYMOUS_CODING CG2116 INTRON cyr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	634101	2R_634101_SNP [dm3] 2R_4746596_SNP [dm6]	T	A	2.676e^-4	0.993	INTRON conu
X	18371625	X_18371625_SNP [dm3] X_18477592_SNP [dm6]	G	T	2.677e^-4	0.993	INTRON CG32547
3R	23597731	3R_23597731_SNP [dm3] 3R_27772009_SNP [dm6]	A	G	2.689e^-4	0.993	INTRON CG34353	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10534964	2R_10534964_MNP [dm3] 2R_14647459_MNP [dm6]	ATG	TAT	2.699e^-4	0.993	INTERGENIC
2L	12619223	2L_12619223_SNP [dm3] 2L_12619223_SNP [dm6]	A	T	2.729e^-4	0.993	INTRON Ref2 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	2520366	2L_2520366_SNP [dm3] 2L_2520366_SNP [dm6]	G	C	2.740e^-4	0.993	INTERGENIC
3L	1396463	3L_1396463_SNP [dm3] 3L_1396463_SNP [dm6]	C	T	2.742e^-4	0.993	INTRON Ptp61F	TF binding site mE1_TFBS_HSA
2L	9971960	2L_9971960_SNP [dm3] 2L_9971960_SNP [dm6]	T	G	2.747e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	15726086	3L_15726086_SNP [dm3] 3L_15732986_SNP [dm6]	A	G	2.750e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	11795482	3L_11795482_SNP [dm3] 3L_11802382_SNP [dm6]	A	G	2.751e^-4	0.993	SYNONYMOUS_CODING CG42255 UPSTREAM tRNA:CR32093
X	1203188	X_1203188_SNP [dm3] X_1309155_SNP [dm6]	C	T	2.759e^-4	0.993	UPSTREAM DAAM INTRON DAAM
2L	10345727	2L_10345727_SNP [dm3] 2L_10345727_SNP [dm6]	A	T	2.759e^-4	0.993	INTRON CG5022
X	8539969	X_8539969_SNP [dm3] X_8645936_SNP [dm6]	T	C	2.764e^-4	0.993	INTRON oc
3L	9154089	3L_9154089_SNP [dm3] 3L_9160989_SNP [dm6]	A	T	2.765e^-4	0.993	INTRON Rdl
X	8566827	X_8566827_SNP [dm3] X_8672794_SNP [dm6]	T	A	2.768e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	2897334	3L_2897334_SNP [dm3] 3L_2897334_SNP [dm6]	T	C	2.771e^-4	0.993	UTR_5_PRIME Shab
2L	6205950	2L_6205950_SNP [dm3] 2L_6205950_SNP [dm6]	T	C	2.774e^-4	0.993	INTRON CG34380	TF binding site BDTNP1_TFBS_da
3L	10965460	3L_10965460_SNP [dm3] 3L_10972360_SNP [dm6]	G	A	2.775e^-4	0.993	UPSTREAM CG14147 INTERGENIC
2L	2277437	2L_2277437_SNP [dm3] 2L_2277437_SNP [dm6]	A	T	2.777e^-4	0.993	DOWNSTREAM CR43753 INTRON CR43753
3L	1589112	3L_1589112_SNP [dm3] 3L_1589112_SNP [dm6]	A	T	2.778e^-4	0.993	INTRON CG13917
3L	1396455	3L_1396455_DEL [dm3] 3L_1396455_DEL [dm6]	CCT	C	2.781e^-4	0.993	INTRON Ptp61F	TF binding site mE1_TFBS_HSA
3L	1396460	3L_1396460_INS [dm3] 3L_1396460_INS [dm6]	C	CTCTAA	2.781e^-4	0.993	INTRON Ptp61F	TF binding site mE1_TFBS_HSA
2L	15364937	2L_15364937_SNP [dm3] 2L_15364937_SNP [dm6]	T	A	2.785e^-4	0.993	INTERGENIC
2L	15380921	2L_15380921_SNP [dm3] 2L_15380921_SNP [dm6]	T	C	2.794e^-4	0.993	INTERGENIC
2L	8908003	2L_8908003_SNP [dm3] 2L_8908003_SNP [dm6]	C	A	2.797e^-4	0.993	INTRON CG34398
3R	18672987	3R_18672987_SNP [dm3] 3R_22847265_SNP [dm6]	G	A	2.802e^-4	0.993	UPSTREAM CG4704 INTERGENIC
3R	23595105	3R_23595105_SNP [dm3] 3R_27769383_SNP [dm6]	T	A	2.803e^-4	0.993	UTR_3_PRIME CG34353 DOWNSTREAM CG34353
2L	10447108	2L_10447108_SNP [dm3] 2L_10447108_SNP [dm6]	T	A	2.812e^-4	0.993	UPSTREAM loh INTRON loh
3R	22947827	3R_22947827_SNP [dm3] 3R_27122105_SNP [dm6]	C	T	2.815e^-4	0.993	SYNONYMOUS_CODING CG6059 DOWNSTREAM CG5882	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	18254173	X_18254173_SNP [dm3] X_18360140_SNP [dm6]	A	C	2.846e^-4	0.993	SYNONYMOUS_CODING CG6106	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17188375	2R_17188375_DEL [dm3] 2R_21300870_DEL [dm6]	ATTCACA	A	2.851e^-4	0.993	INTRON CG42672
3R	25103657	3R_25103657_SNP [dm3] 3R_29277935_SNP [dm6]	A	C	2.851e^-4	0.993	UPSTREAM CR45568 INTERGENIC	regulatory region REDfly_CRMs
2L	1068431	2L_1068431_DEL [dm3] 2L_1068431_DEL [dm6]	GACCAG	G	2.851e^-4	0.993	INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12109395	2R_12109395_SNP [dm3] 2R_16221890_SNP [dm6]	G	A	2.854e^-4	0.993	SPLICE_SITE_DONOR CR43898 UPSTREAM mrj DOWNSTREAM CG7798 INTRON CR43898	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	9723960	3R_9723960_SNP [dm3] 3R_13898238_SNP [dm6]	T	C	2.862e^-4	0.993	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	840718	2L_840718_SNP [dm3] 2L_840718_SNP [dm6]	A	G	2.871e^-4	0.993	INTRON drongo
3L	1687201	3L_1687201_SNP [dm3] 3L_1687201_SNP [dm6]	A	G	2.875e^-4	0.993	INTRON CG7991
2R	7423966	2R_7423966_SNP [dm3] 2R_11536461_SNP [dm6]	T	C	2.880e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	12620739	2L_12620739_DEL [dm3] 2L_12620739_DEL [dm6]	AAAAAT	A	2.888e^-4	0.993	INTRON Ref2 & 1 other
2L	2170870	2L_2170870_SNP [dm3] 2L_2170870_SNP [dm6]	A	G	2.899e^-4	0.993	INTRON aop	regulatory region REDfly_CRMs
2R	14280602	2R_14280602_DEL [dm3] 2R_18393097_DEL [dm6]	CGAC	C	2.905e^-4	0.993	UPSTREAM Idgf5 INTERGENIC
2L	4412536	2L_4412536_SNP [dm3] 2L_4412536_SNP [dm6]	C	A	2.911e^-4	0.993	DOWNSTREAM CG43055 INTRON CG15431
3L	2897103	3L_2897103_SNP [dm3] 3L_2897103_SNP [dm6]	A	G	2.911e^-4	0.993	INTRON Shab	TF binding site mE1_TFBS_Trl
X	20543729	X_20543729_SNP [dm3] X_20672702_SNP [dm6]	A	T	2.911e^-4	0.993	INTRON hydra
X	7752613	X_7752613_SNP [dm3] X_7858580_SNP [dm6]	A	G	2.913e^-4	0.993	SYNONYMOUS_CODING CG1409
3L	14493223	3L_14493223_SNP [dm3] 3L_14500123_SNP [dm6]	A	T	2.913e^-4	0.993	INTRON bbg
2L	1460357	2L_1460357_SNP [dm3] 2L_1460357_SNP [dm6]	T	A	2.918e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_inv
3L	10848262	3L_10848262_SNP [dm3] 3L_10855162_SNP [dm6]	C	T	2.919e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4416957	2L_4416957_SNP [dm3] 2L_4416957_SNP [dm6]	C	T	2.921e^-4	0.993	INTRON CG15431	TF binding site mE1_TFBS_chinmo
3R	8985973	3R_8985973_SNP [dm3] 3R_13160251_SNP [dm6]	C	T	2.922e^-4	0.993	INTRON timeout
2R	4115280	2R_4115280_SNP [dm3] 2R_8227775_SNP [dm6]	T	A	2.934e^-4	0.993	DOWNSTREAM CG34217 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	1201668	X_1201668_SNP [dm3] X_1307635_SNP [dm6]	C	T	2.935e^-4	0.993	INTRON DAAM
2L	8902735	2L_8902735_SNP [dm3] 2L_8902735_SNP [dm6]	T	C	2.943e^-4	0.993	INTRON CG34398
2L	15367742	2L_15367742_SNP [dm3] 2L_15367742_SNP [dm6]	A	G	2.946e^-4	0.993	INTERGENIC
2L	15998658	2L_15998658_SNP [dm3] 2L_15998658_SNP [dm6]	A	C	2.947e^-4	0.993	INTERGENIC
3L	4380454	3L_4380454_SNP [dm3] 3L_4380454_SNP [dm6]	T	A	2.950e^-4	0.993	UPSTREAM DopEcR DOWNSTREAM CG32240 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	12604868	2L_12604868_SNP [dm3] 2L_12604868_SNP [dm6]	T	C	2.950e^-4	0.993	INTRON nub	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	8325468	2L_8325468_SNP [dm3] 2L_8325468_SNP [dm6]	C	A	2.954e^-4	0.993	UPSTREAM CG7781 INTERGENIC
2R	6207930	2R_6207930_SNP [dm3] 2R_10320425_SNP [dm6]	A	T	2.956e^-4	0.993	INTRON Ndg & 1 other
2R	8311269	2R_8311269_SNP [dm3] 2R_12423764_SNP [dm6]	C	T	2.969e^-4	0.993	NON_SYNONYMOUS_CODING CG8520	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	18106446	X_18106446_SNP [dm3] X_18212413_SNP [dm6]	C	T	2.975e^-4	0.993	UTR_3_PRIME CG33639 DOWNSTREAM CG33639	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22746408	3R_22746408_SNP [dm3] 3R_26920686_SNP [dm6]	A	C	2.983e^-4	0.993	INTRON sda
2R	7651779	2R_7651779_SNP [dm3] 2R_11764274_SNP [dm6]	G	C	2.983e^-4	0.993	INTRON ths
3L	1326284	3L_1326284_SNP [dm3] 3L_1326284_SNP [dm6]	A	G	2.995e^-4	0.993	SYNONYMOUS_CODING Myo61F	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16051406	3R_16051406_SNP [dm3] 3R_20225684_SNP [dm6]	A	G	2.996e^-4	0.993	INTRON Nlg4
2L	8902741	2L_8902741_SNP [dm3] 2L_8902741_SNP [dm6]	G	T	3.003e^-4	0.993	INTRON CG34398
2L	712062	2L_712062_SNP [dm3] 2L_712062_SNP [dm6]	A	G	3.006e^-4	0.993	INTRON ds & 1 other	TF binding site BDTNP1_TFBS_da
2L	15284489	2L_15284489_SNP [dm3] 2L_15284489_SNP [dm6]	A	T	3.012e^-4	0.993	UPSTREAM CG15263 INTERGENIC
3R	9049000	3R_9049000_SNP [dm3] 3R_13223278_SNP [dm6]	G	A	3.025e^-4	0.993	UTR_3_PRIME Ace
3R	22651470	3R_22651470_SNP [dm3] 3R_26825748_SNP [dm6]	C	T	3.033e^-4	0.993	INTRON Tl
3R	8669894	3R_8669894_SNP [dm3] 3R_12844172_SNP [dm6]	C	T	3.050e^-4	0.993	INTRON beat-Va
3R	14691013	3R_14691013_SNP [dm3] 3R_18865291_SNP [dm6]	C	T	3.057e^-4	0.993	INTERGENIC
3R	14027306	3R_14027306_SNP [dm3] 3R_18201584_SNP [dm6]	T	G	3.071e^-4	0.993	INTRON CG7985
3R	13598223	3R_13598223_SNP [dm3] 3R_17772501_SNP [dm6]	T	G	3.072e^-4	0.993	NON_SYNONYMOUS_CODING CG43102
3R	14992027	3R_14992027_SNP [dm3] 3R_19166305_SNP [dm6]	C	A	3.074e^-4	0.993	INTRON sqz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	6427850	X_6427850_SNP [dm3] X_6533817_SNP [dm6]	T	G	3.079e^-4	0.993	UPSTREAM dx & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_Ubx
3R	19514565	3R_19514565_SNP [dm3] 3R_23688843_SNP [dm6]	G	A	3.080e^-4	0.993	DOWNSTREAM CG10254 & 1 other INTERGENIC
2L	8674200	2L_8674200_SNP [dm3] 2L_8674200_SNP [dm6]	T	C	3.088e^-4	0.993	SYNONYMOUS_CODING Glt	TF binding site mE1_TFBS_cad
2L	15117185	2L_15117185_SNP [dm3] 2L_15117185_SNP [dm6]	T	A	3.092e^-4	0.993	SYNONYMOUS_CODING stc
2L	1285464	2L_1285464_SNP [dm3] 2L_1285464_SNP [dm6]	G	A	3.092e^-4	0.993	INTRON robo3
3R	22380961	3R_22380961_SNP [dm3] 3R_26555239_SNP [dm6]	A	G	3.092e^-4	0.993	SYNONYMOUS_CODING scrib
2L	6327122	2L_6327122_SNP [dm3] 2L_6327122_SNP [dm6]	G	A	3.097e^-4	0.993	SYNONYMOUS_CODING PDZ-GEF	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	19652226	2L_19652226_DEL [dm3] 2L_19652226_DEL [dm6]	AA	A	3.100e^-4	0.993	INTRON Lar
3R	23591223	3R_23591223_SNP [dm3] 3R_27765501_SNP [dm6]	G	A	3.108e^-4	0.993	INTERGENIC
3R	17610728	3R_17610728_SNP [dm3] 3R_21785006_SNP [dm6]	C	A	3.135e^-4	0.993	UTR_3_PRIME CASK DOWNSTREAM CASK EXON CRG	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	18375201	X_18375201_SNP [dm3] X_18481168_SNP [dm6]	C	A	3.145e^-4	0.993	SYNONYMOUS_CODING Hayan DOWNSTREAM CR45714
3L	16385830	3L_16385830_SNP [dm3] 3L_16392730_SNP [dm6]	T	C	3.146e^-4	0.993	UPSTREAM CG44836 INTRON CG44836
2L	3395432	2L_3395432_SNP [dm3] 2L_3395432_SNP [dm6]	T	G	3.160e^-4	0.993	INTERGENIC
2L	8412006	2L_8412006_SNP [dm3] 2L_8412006_SNP [dm6]	T	G	3.165e^-4	0.993	UPSTREAM CG13397 DOWNSTREAM CG13398 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	7237455	3L_7237455_SNP [dm3] 3L_7244355_SNP [dm6]	T	C	3.166e^-4	0.993	UPSTREAM mei-P22 & 1 other INTERGENIC	TF binding site mE1_TFBS_Ubx
3R	18878112	3R_18878112_SNP [dm3] 3R_23052390_SNP [dm6]	G	A	3.167e^-4	0.993	SYNONYMOUS_CODING Gr94a INTRON p53	TF binding site mE1_TFBS_sens
2L	9017981	2L_9017981_SNP [dm3] 2L_9017981_SNP [dm6]	C	G	3.177e^-4	0.993	INTERGENIC
3R	18673456	3R_18673456_SNP [dm3] 3R_22847734_SNP [dm6]	C	T	3.182e^-4	0.993	INTERGENIC
3R	18813000	3R_18813000_SNP [dm3] 3R_22987278_SNP [dm6]	A	T	3.182e^-4	0.993	UPSTREAM Or94a INTRON Nha2
2L	6234798	2L_6234798_SNP [dm3] 2L_6234798_SNP [dm6]	G	A	3.182e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9377219	X_9377219_SNP [dm3] X_9483186_SNP [dm6]	T	C	3.185e^-4	0.993	INTRON mgl
3L	5874661	3L_5874661_SNP [dm3] 3L_5881561_SNP [dm6]	C	A	3.187e^-4	0.993	UPSTREAM CG13287 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	9382748	2L_9382748_DEL [dm3] 2L_9382748_DEL [dm6]	AA	A	3.190e^-4	0.993	INTRON Shawl
3L	2606557	3L_2606557_SNP [dm3] 3L_2606557_SNP [dm6]	T	A	3.192e^-4	0.993	INTRON Pxn
2L	2695133	2L_2695133_SNP [dm3] 2L_2695133_SNP [dm6]	A	T	3.198e^-4	0.993	DOWNSTREAM CG15398 INTRON CG31690
2R	10534953	2R_10534953_SNP [dm3] 2R_14647448_SNP [dm6]	T	C	3.200e^-4	0.993	INTERGENIC
3L	10565363	3L_10565363_SNP [dm3] 3L_10572263_SNP [dm6]	C	A	3.206e^-4	0.993	INTRON A2bp1
2R	2400493	2R_2400493_SNP [dm3] 2R_6512988_SNP [dm6]	G	A	3.216e^-4	0.993	INTRON jing	TF binding site BDTNP1_TFBS_dl
2L	14661253	2L_14661253_DEL [dm3] 2L_14661253_DEL [dm6]	AACA	A	3.218e^-4	0.993	INTRON osp
X	689156	X_689156_SNP [dm3] X_795123_SNP [dm6]	A	G	3.226e^-4	0.993	SYNONYMOUS_CODING CG16989	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	11350962	2R_11350962_SNP [dm3] 2R_15463457_SNP [dm6]	G	T	3.227e^-4	0.993	UTR_3_PRIME CG43729 INTRON CG43729
3L	8583491	3L_8583491_SNP [dm3] 3L_8590391_SNP [dm6]	G	A	3.233e^-4	0.993	UTR_5_PRIME CG43078 INTRON CG43078
2L	14865979	2L_14865979_SNP [dm3] 2L_14865979_SNP [dm6]	G	A	3.234e^-4	0.993	INTERGENIC
3L	7963699	3L_7963699_SNP [dm3] 3L_7970599_SNP [dm6]	G	A	3.237e^-4	0.993	UTR_5_PRIME RNaseX25	TF binding site BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
3R	22741110	3R_22741110_SNP [dm3] 3R_26915388_SNP [dm6]	C	T	3.238e^-4	0.993	UPSTREAM sda INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9971969	2L_9971969_SNP [dm3] 2L_9971969_SNP [dm6]	G	A	3.241e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	4557895	X_4557895_SNP [dm3] X_4663862_SNP [dm6]	A	G	3.243e^-4	0.993	INTRON CG3009
X	10459766	X_10459766_SNP [dm3] X_10565733_SNP [dm6]	G	C	3.252e^-4	0.993	DOWNSTREAM CG15296 INTRON spri
3L	3915544	3L_3915544_SNP [dm3] 3L_3915544_SNP [dm6]	G	A	3.259e^-4	0.993	INTRON Eip63F-1
2R	16756270	2R_16756270_SNP [dm3] 2R_20868765_SNP [dm6]	A	G	3.266e^-4	0.993	UTR_3_PRIME IM4 DOWNSTREAM IM4
2R	10535000	2R_10535000_SNP [dm3] 2R_14647495_SNP [dm6]	C	T	3.269e^-4	0.993	INTERGENIC
3R	14027323	3R_14027323_SNP [dm3] 3R_18201601_SNP [dm6]	C	T	3.271e^-4	0.993	INTRON CG7985
3R	24066829	3R_24066829_SNP [dm3] 3R_28241107_SNP [dm6]	G	A	3.274e^-4	0.993	DOWNSTREAM CG34354 INTERGENIC
2L	10189800	2L_10189800_SNP [dm3] 2L_10189800_SNP [dm6]	G	A	3.275e^-4	0.993	DOWNSTREAM CG31874 INTRON Sur
2R	19854938	2R_19854938_SNP [dm3] 2R_23967415_SNP [dm6]	T	G	3.280e^-4	0.993	SYNONYMOUS_CODING CG34213 UPSTREAM or DOWNSTREAM Alas	TF binding site mE1_TFBS_Ubx
2R	8158726	2R_8158726_INS [dm3] 2R_12271221_INS [dm6]	A	ATA	3.280e^-4	0.993	INTRON Cam	TF binding site mE1_TFBS_Trl
2R	14137904	2R_14137904_SNP [dm3] 2R_18250399_SNP [dm6]	G	A	3.286e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_cad
2L	3048463	2L_3048463_SNP [dm3] 2L_3048463_SNP [dm6]	C	T	3.288e^-4	0.993	UPSTREAM snRNA:U5:23D INTRON v_2_k05816	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	14140772	3R_14140772_SNP [dm3] 3R_18315050_SNP [dm6]	G	T	3.289e^-4	0.993	UPSTREAM PKD INTERGENIC
3L	1338524	3L_1338524_SNP [dm3] 3L_1338524_SNP [dm6]	T	A	3.296e^-4	0.993	NON_SYNONYMOUS_CODING l_3_02640 DOWNSTREAM CG2199	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	23597734	3R_23597734_SNP [dm3] 3R_27772012_SNP [dm6]	A	T	3.298e^-4	0.993	INTRON CG34353	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23230421	3R_23230421_SNP [dm3] 3R_27404699_SNP [dm6]	T	G	3.308e^-4	0.993	INTRON side
2L	15381641	2L_15381641_SNP [dm3] 2L_15381641_SNP [dm6]	C	T	3.311e^-4	0.993	INTERGENIC
3L	1587135	3L_1587135_SNP [dm3] 3L_1587135_SNP [dm6]	A	T	3.320e^-4	0.993	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	16314174	3L_16314174_SNP [dm3] 3L_16321074_SNP [dm6]	C	G	3.338e^-4	0.993	NON_SYNONYMOUS_CODING CG42718 DOWNSTREAM CG13060
3R	23900194	3R_23900194_SNP [dm3] 3R_28074472_SNP [dm6]	G	A	3.339e^-4	0.993	INTRON CG34362	TF binding site mE1_TFBS_chinmo
3L	7963674	3L_7963674_INS [dm3] 3L_7970574_INS [dm6]	C	CA	3.342e^-4	0.993	UPSTREAM RNaseX25 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
2L	10471050	2L_10471050_SNP [dm3] 2L_10471050_SNP [dm6]	T	C	3.343e^-4	0.993	INTRON RluA-1
3R	21281649	3R_21281649_SNP [dm3] 3R_25455927_SNP [dm6]	C	T	3.353e^-4	0.993	INTRON Fur1	TF binding site BDTNP1_TFBS_twi
2L	14930061	2L_14930061_SNP [dm3] 2L_14930061_SNP [dm6]	T	C	3.359e^-4	0.993	SYNONYMOUS_CODING CG3491 INTRON CG42313
2L	10379014	2L_10379014_SNP [dm3] 2L_10379014_SNP [dm6]	T	A	3.374e^-4	0.993	SYNONYMOUS_CODING dpr19
2L	6234783	2L_6234783_SNP [dm3] 2L_6234783_SNP [dm6]	T	G	3.380e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8986293	3R_8986293_SNP [dm3] 3R_13160571_SNP [dm6]	T	C	3.382e^-4	0.993	INTRON timeout
2L	500496	2L_500496_SNP [dm3] 2L_500496_SNP [dm6]	C	T	3.385e^-4	0.993	INTRON ush
3L	1831893	3L_1831893_DEL [dm3] 3L_1831893_DEL [dm6]	TG	T	3.385e^-4	0.993	UPSTREAM Cpr62Ba DOWNSTREAM Cpr62Bb INTERGENIC
2L	501301	2L_501301_SNP [dm3] 2L_501301_SNP [dm6]	C	T	3.386e^-4	0.993	INTRON ush
3R	14027318	3R_14027318_SNP [dm3] 3R_18201596_SNP [dm6]	C	T	3.389e^-4	0.993	INTRON CG7985
X	1047119	X_1047119_SNP [dm3] X_1153086_SNP [dm6]	G	C	3.392e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	12790991	3R_12790991_SNP [dm3] 3R_16965269_SNP [dm6]	G	A	3.397e^-4	0.993	INTRON Abd-B
3R	22469068	3R_22469068_SNP [dm3] 3R_26643346_SNP [dm6]	G	A	3.405e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_cnc
3R	25355061	3R_25355061_SNP [dm3] 3R_29529339_SNP [dm6]	G	A	3.413e^-4	0.993	INTERGENIC
2L	7002604	2L_7002604_SNP [dm3] 2L_7002604_SNP [dm6]	T	G	3.415e^-4	0.993	INTRON uif
2L	9988317	2L_9988317_SNP [dm3] 2L_9988317_SNP [dm6]	G	A	3.416e^-4	0.993	INTRON bib	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	14140795	3R_14140795_SNP [dm3] 3R_18315073_SNP [dm6]	T	A	3.434e^-4	0.993	UPSTREAM PKD INTERGENIC
2L	13233163	2L_13233163_SNP [dm3] 2L_13233163_SNP [dm6]	C	G	3.435e^-4	0.993	DOWNSTREAM CG15479 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
3R	25042831	3R_25042831_SNP [dm3] 3R_29217109_SNP [dm6]	G	A	3.436e^-4	0.993	UPSTREAM mir-996 INTRON CR31044 EXON CR31044	TF binding site mE1_TFBS_sens
X	5202152	X_5202152_SNP [dm3] X_5308119_SNP [dm6]	A	G	3.440e^-4	0.993	SYNONYMOUS_CODING Cdk7 UPSTREAM CG17764	TF binding site mE1_TFBS_sens
2L	5789870	2L_5789870_SNP [dm3] 2L_5789870_SNP [dm6]	G	A	3.445e^-4	0.993	INTRON CG9171	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	10384167	X_10384167_SNP [dm3] X_10490134_SNP [dm6]	T	G	3.457e^-4	0.993	UTR_3_PRIME spri DOWNSTREAM spri
2L	9473028	2L_9473028_SNP [dm3] 2L_9473028_SNP [dm6]	C	A	3.463e^-4	0.993	INTERGENIC
3R	14027302	3R_14027302_DEL [dm3] 3R_18201580_DEL [dm6]	TCT	T	3.466e^-4	0.993	INTRON CG7985
3L	11219682	3L_11219682_SNP [dm3] 3L_11226582_SNP [dm6]	C	G	3.474e^-4	0.993	INTRON CG42671	TF binding site mE1_TFBS_cad
2L	1249966	2L_1249966_SNP [dm3] 2L_1249966_SNP [dm6]	C	A	3.502e^-4	0.993	INTERGENIC
2L	20497376	2L_20497376_SNP [dm3] 2L_20497376_SNP [dm6]	C	A	3.516e^-4	0.993	INTERGENIC
3L	19237871	3L_19237871_SNP [dm3] 3L_19244771_SNP [dm6]	C	A	3.519e^-4	0.993	INTERGENIC
3L	3412973	3L_3412973_SNP [dm3] 3L_3412973_SNP [dm6]	T	C	3.523e^-4	0.993	UPSTREAM mir-2282 INTRON sty
3L	15071646	3L_15071646_SNP [dm3] 3L_15078546_SNP [dm6]	T	G	3.524e^-4	0.993	UPSTREAM Or71a INTRON cp309
3R	18409703	3R_18409703_SNP [dm3] 3R_22583981_SNP [dm6]	T	G	3.525e^-4	0.993	SPLICE_SITE_REGION CG33107 UPSTREAM Dph5 & 1 other INTRON CG33107	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	12754795	X_12754795_DEL [dm3] X_12860762_DEL [dm6]	AACTCGA	G	3.532e^-4	0.993	INTRON Pde9
3L	1834792	3L_1834792_DEL [dm3] 3L_1834792_DEL [dm6]	TT	T	3.534e^-4	0.993	INTRON Cpr62Bb	TF binding site mE1_TFBS_inv
2L	4223411	2L_4223411_SNP [dm3] 2L_4223411_SNP [dm6]	A	T	3.544e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	2606555	3L_2606555_SNP [dm3] 3L_2606555_SNP [dm6]	C	T	3.544e^-4	0.993	INTRON Pxn
3R	19196036	3R_19196036_SNP [dm3] 3R_23370314_SNP [dm6]	G	A	3.545e^-4	0.993	INTERGENIC
2R	19854661	2R_19854661_DEL [dm3] 2R_23967138_DEL [dm6]	AC	A	3.546e^-4	0.993	UTR_3_PRIME CG34213 UPSTREAM or DOWNSTREAM Alas
3L	4764158	3L_4764158_SNP [dm3] 3L_4764158_SNP [dm6]	A	G	3.547e^-4	0.993	INTRON RhoGEF64C
X	18110266	X_18110266_DEL [dm3] X_18216233_DEL [dm6]	TTT	T	3.550e^-4	0.993	INTRON CG33639
3R	20600928	3R_20600928_SNP [dm3] 3R_24775206_SNP [dm6]	G	T	3.557e^-4	0.993	INTRON CG42331
3R	18841949	3R_18841949_SNP [dm3] 3R_23016227_SNP [dm6]	A	C	3.559e^-4	0.993	DOWNSTREAM CG6688 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	11264726	3L_11264726_SNP [dm3] 3L_11271626_SNP [dm6]	G	A	3.562e^-4	0.993	INTERGENIC
3R	21283717	3R_21283717_SNP [dm3] 3R_25457995_SNP [dm6]	T	A	3.568e^-4	0.993	INTRON Fur1	TF binding site BDTNP1_TFBS_twi
2R	14094763	2R_14094763_SNP [dm3] 2R_18207258_SNP [dm6]	G	A	3.569e^-4	0.993	UPSTREAM CG30114 INTERGENIC
2R	18474921	2R_18474921_SNP [dm3] 2R_22587416_SNP [dm6]	C	A	3.571e^-4	0.993	INTRON dnr1
2L	11947635	2L_11947635_SNP [dm3] 2L_11947635_SNP [dm6]	T	A	3.576e^-4	0.993	UPSTREAM CG16964 DOWNSTREAM Cry INTERGENIC
X	9249948	X_9249948_SNP [dm3] X_9355915_SNP [dm6]	A	T	3.589e^-4	0.993	UPSTREAM BCL7-like INTRON CG34449	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Ubx
2L	14922118	2L_14922118_SNP [dm3] 2L_14922118_SNP [dm6]	A	T	3.590e^-4	0.993	INTRON CG42313	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	5515287	2L_5515287_SNP [dm3] 2L_5515287_SNP [dm6]	G	A	3.592e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14037373	3R_14037373_SNP [dm3] 3R_18211651_SNP [dm6]	A	T	3.594e^-4	0.993	INTRON CG7985
3L	3421864	3L_3421864_SNP [dm3] 3L_3421864_SNP [dm6]	T	C	3.596e^-4	0.993	INTRON sty
3L	5916481	3L_5916481_SNP [dm3] 3L_5923381_SNP [dm6]	C	T	3.599e^-4	0.993	SYNONYMOUS_CODING CG32407 UPSTREAM Vap-33B	TF binding site mE1_TFBS_cad
2L	2520358	2L_2520358_SNP [dm3] 2L_2520358_SNP [dm6]	T	G	3.604e^-4	0.993	INTERGENIC
3L	2604382	3L_2604382_DEL [dm3] 3L_2604382_DEL [dm6]	TTG	T	3.609e^-4	0.993	INTRON Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2604402	3L_2604402_SNP [dm3] 3L_2604402_SNP [dm6]	T	C	3.609e^-4	0.993	INTRON Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16051404	3R_16051404_SNP [dm3] 3R_20225682_SNP [dm6]	T	C	3.612e^-4	0.993	INTRON Nlg4
2L	15380994	2L_15380994_SNP [dm3] 2L_15380994_SNP [dm6]	A	G	3.619e^-4	0.993	INTERGENIC
2L	6761868	2L_6761868_SNP [dm3] 2L_6761868_SNP [dm6]	C	T	3.619e^-4	0.993	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	17326072	X_17326072_SNP [dm3] X_17432039_SNP [dm6]	T	C	3.619e^-4	0.993	INTRON CG12994
2R	19137933	2R_19137933_SNP [dm3] 2R_23250410_SNP [dm6]	G	A	3.627e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	6761922	2L_6761922_SNP [dm3] 2L_6761922_SNP [dm6]	G	C	3.635e^-4	0.993	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	2884215	X_2884215_SNP [dm3] X_2990182_SNP [dm6]	G	C	3.657e^-4	0.993	INTRON kirre	TF binding site BDTNP1_TFBS_z
3R	26815426	3R_26815426_SNP [dm3] 3R_30989704_SNP [dm6]	A	G	3.660e^-4	0.993	SYNONYMOUS_CODING CG31008 INTRON 5-HT7
2L	1030100	2L_1030100_SNP [dm3] 2L_1030100_SNP [dm6]	C	T	3.669e^-4	0.993	INTRON IA-2
3R	12710717	3R_12710717_SNP [dm3] 3R_16884995_SNP [dm6]	G	A	3.685e^-4	0.993	INTRON iab-8
3R	22823741	3R_22823741_DEL [dm3] 3R_26998019_DEL [dm6]	TAGT	T	3.694e^-4	0.993	INTRON RYa-R
3L	2205867	3L_2205867_SNP [dm3] 3L_2205867_SNP [dm6]	G	A	3.712e^-4	0.993	INTERGENIC
2L	15381108	2L_15381108_SNP [dm3] 2L_15381108_SNP [dm6]	A	T	3.716e^-4	0.993	INTERGENIC
X	10457100	X_10457100_SNP [dm3] X_10563067_SNP [dm6]	T	C	3.726e^-4	0.993	INTRON spri
3L	18589097	3L_18589097_SNP [dm3] 3L_18595997_SNP [dm6]	C	T	3.726e^-4	0.993	UPSTREAM CR45389 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	1824961	3L_1824961_SNP [dm3] 3L_1824961_SNP [dm6]	C	A	3.740e^-4	0.993	INTRON Cpr62Ba
3R	20955957	3R_20955957_SNP [dm3] 3R_25130235_SNP [dm6]	A	G	3.743e^-4	0.993	NON_SYNONYMOUS_CODING Clbn
2R	16689060	2R_16689060_SNP [dm3] 2R_20801555_SNP [dm6]	C	A	3.744e^-4	0.993	INTERGENIC
3L	18569237	3L_18569237_SNP [dm3] 3L_18576137_SNP [dm6]	A	T	3.744e^-4	0.993	UTR_3_PRIME AstC-R1
3R	27145410	3R_27145410_SNP [dm3] 3R_31319688_SNP [dm6]	T	A	3.748e^-4	0.993	INTRON CG34347
3R	9755701	3R_9755701_SNP [dm3] 3R_13929979_SNP [dm6]	C	T	3.756e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	4764174	3L_4764174_SNP [dm3] 3L_4764174_SNP [dm6]	G	T	3.759e^-4	0.993	INTRON RhoGEF64C
3L	4764183	3L_4764183_INS [dm3] 3L_4764183_INS [dm6]	G	GTG	3.759e^-4	0.993	INTRON RhoGEF64C
3L	1771459	3L_1771459_SNP [dm3] 3L_1771459_SNP [dm6]	T	C	3.797e^-4	0.993	SYNONYMOUS_CODING Dhc62B DOWNSTREAM CG13933	TF binding site mE1_TFBS_chinmo
3R	17380492	3R_17380492_SNP [dm3] 3R_21554770_SNP [dm6]	C	G	3.800e^-4	0.993	SYNONYMOUS_CODING slou
2R	12311873	2R_12311873_SNP [dm3] 2R_16424368_SNP [dm6]	C	T	3.800e^-4	0.993	SYNONYMOUS_CODING Sema-2b
3L	7723231	3L_7723231_SNP [dm3] 3L_7730131_SNP [dm6]	G	C	3.803e^-4	0.993	SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
3L	1394597	3L_1394597_SNP [dm3] 3L_1394597_SNP [dm6]	C	G	3.809e^-4	0.993	INTRON Ptp61F
2L	7850924	2L_7850924_INS [dm3] 2L_7850924_INS [dm6]	C	CC	3.812e^-4	0.993	INTRON CG14535
2L	15020492	2L_15020492_SNP [dm3] 2L_15020492_SNP [dm6]	T	C	3.818e^-4	0.993	INTRON GABA-B-R1
3R	9898116	3R_9898116_SNP [dm3] 3R_14072394_SNP [dm6]	C	G	3.820e^-4	0.993	INTRON foxo
X	20466424	X_20466424_SNP [dm3] X_20595397_SNP [dm6]	T	G	3.825e^-4	0.993	INTRON RunxA
2L	8905742	2L_8905742_SNP [dm3] 2L_8905742_SNP [dm6]	T	C	3.829e^-4	0.993	INTRON CG34398
3L	13654988	3L_13654988_SNP [dm3] 3L_13661888_SNP [dm6]	G	C	3.832e^-4	0.993	INTRON bru-3
3R	25335642	3R_25335642_SNP [dm3] 3R_29509920_SNP [dm6]	T	A	3.834e^-4	0.993	INTERGENIC
3R	10611232	3R_10611232_DEL [dm3] 3R_14785510_DEL [dm6]	GTGCATA	G	3.839e^-4	0.993	INTRON jvl
2L	12228772	2L_12228772_DEL [dm3] 2L_12228772_DEL [dm6]	AGAGCATA	A	3.843e^-4	0.993	INTRON aret
X	20558112	X_20558112_SNP [dm3] X_20687085_SNP [dm6]	A	C	3.843e^-4	0.993	INTRON CR43862	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	9758983	3R_9758983_SNP [dm3] 3R_13933261_SNP [dm6]	T	C	3.857e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	19940478	3L_19940478_SNP [dm3] 3L_19947378_SNP [dm6]	T	G	3.863e^-4	0.993	INTRON Ac76E
3R	13597859	3R_13597859_SNP [dm3] 3R_17772137_SNP [dm6]	A	G	3.878e^-4	0.993	INTRON CG43102
X	20117774	X_20117774_SNP [dm3] X_20246700_SNP [dm6]	C	T	3.881e^-4	0.993	INTRON Peritrophin-A	TF binding site mE1_TFBS_chinmo
2L	15240176	2L_15240176_SNP [dm3] 2L_15240176_SNP [dm6]	A	C	3.882e^-4	0.993	INTRON ZnT35C	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	18202486	3L_18202486_SNP [dm3] 3L_18209386_SNP [dm6]	T	A	3.883e^-4	0.993	INTERGENIC
2R	11533278	2R_11533278_SNP [dm3] 2R_15645773_SNP [dm6]	A	G	3.886e^-4	0.993	INTRON CG42524
2R	19555898	2R_19555898_SNP [dm3] 2R_23668375_SNP [dm6]	C	T	3.891e^-4	0.993	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	20466643	X_20466643_DEL [dm3] X_20595616_DEL [dm6]	GGGTATTT	G	3.897e^-4	0.993	INTRON RunxA
2L	14813252	2L_14813252_SNP [dm3] 2L_14813252_SNP [dm6]	A	C	3.898e^-4	0.993	DOWNSTREAM CG33309 INTERGENIC
2L	11403292	2L_11403292_INS [dm3] 2L_11403292_INS [dm6]	G	GC	3.902e^-4	0.993	INTERGENIC	regulatory region REDfly_CRMs
2R	10207569	2R_10207569_DEL [dm3] 2R_14320064_DEL [dm6]	CAGC	C	3.909e^-4	0.993	INTRON Shroom
2L	9533507	2L_9533507_SNP [dm3] 2L_9533507_SNP [dm6]	G	A	3.914e^-4	0.993	SPLICE_SITE_REGION Oatp30B INTRON Oatp30B
X	18971673	X_18971673_SNP [dm3] X_19077640_SNP [dm6]	A	T	3.918e^-4	0.993	UPSTREAM CG7406 INTERGENIC
2L	7851142	2L_7851142_SNP [dm3] 2L_7851142_SNP [dm6]	T	G	3.930e^-4	0.993	INTRON CG14535
3R	24685533	3R_24685533_SNP [dm3] 3R_28859811_SNP [dm6]	A	C	3.941e^-4	0.993	UPSTREAM Inx3 INTRON spg	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	4004202	2R_4004202_SNP [dm3] 2R_8116697_SNP [dm6]	G	C	3.954e^-4	0.993	SYNONYMOUS_CODING Asap	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	3889945	2R_3889945_SNP [dm3] 2R_8002440_SNP [dm6]	T	A	3.960e^-4	0.993	UPSTREAM CG11191 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	11389800	2L_11389800_SNP [dm3] 2L_11389800_SNP [dm6]	C	T	3.968e^-4	0.993	DOWNSTREAM CR43681 EXON CR43681	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3343020	2L_3343020_SNP [dm3] 2L_3343020_SNP [dm6]	T	A	3.973e^-4	0.993	INTRON E23	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3421686	3L_3421686_SNP [dm3] 3L_3421686_SNP [dm6]	T	G	3.973e^-4	0.993	INTRON sty
3L	18575735	3L_18575735_SNP [dm3] 3L_18582635_SNP [dm6]	C	A	3.973e^-4	0.993	UPSTREAM CR45435 INTERGENIC
3R	17864633	3R_17864633_SNP [dm3] 3R_22038911_SNP [dm6]	G	A	3.996e^-4	0.993	UTR_3_PRIME pit DOWNSTREAM pit
2L	1708104	2L_1708104_SNP [dm3] 2L_1708104_SNP [dm6]	G	A	3.998e^-4	0.993	SYNONYMOUS_CODING CG17660 UPSTREAM CR44976	TF binding site mE1_TFBS_cad
X	9226795	X_9226795_SNP [dm3] X_9332762_SNP [dm6]	C	T	4.024e^-4	0.993	INTRON CG34449
2L	8903357	2L_8903357_SNP [dm3] 2L_8903357_SNP [dm6]	A	G	4.025e^-4	0.993	INTRON CG34398
3R	14469858	3R_14469858_SNP [dm3] 3R_18644136_SNP [dm6]	T	C	4.031e^-4	0.993	INTRON qin
3R	26695035	3R_26695035_SNP [dm3] 3R_30869313_SNP [dm6]	T	G	4.038e^-4	0.993	DOWNSTREAM Cpr100A INTERGENIC
3R	20997910	3R_20997910_DEL [dm3] 3R_25172188_DEL [dm6]	CC	C	4.045e^-4	0.993	INTRON lobo	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17229374	2R_17229374_SNP [dm3] 2R_21341869_SNP [dm6]	A	T	4.046e^-4	0.993	UPSTREAM CG15666 DOWNSTREAM dom INTERGENIC
3L	18326600	3L_18326600_SNP [dm3] 3L_18333500_SNP [dm6]	A	T	4.048e^-4	0.993	INTERGENIC
2L	6356154	2L_6356154_SNP [dm3] 2L_6356154_SNP [dm6]	A	T	4.048e^-4	0.993	NON_SYNONYMOUS_CODING ppk14 DOWNSTREAM CG9500	TF binding site mE1_TFBS_bab1 mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3412970	3L_3412970_SNP [dm3] 3L_3412970_SNP [dm6]	C	A	4.059e^-4	0.993	UPSTREAM mir-2282 INTRON sty
2R	15310901	2R_15310901_SNP [dm3] 2R_19423396_SNP [dm6]	C	G	4.061e^-4	0.993	INTRON hts	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	3535772	3L_3535772_SNP [dm3] 3L_3535772_SNP [dm6]	C	T	4.066e^-4	0.993	INTRON Eip63E
3R	4852768	3R_4852768_SNP [dm3] 3R_9027046_SNP [dm6]	C	T	4.071e^-4	0.993	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	19047952	2R_19047952_SNP [dm3] 2R_23160429_SNP [dm6]	A	G	4.080e^-4	0.993	SYNONYMOUS_CODING CG9899
3R	13660339	3R_13660339_SNP [dm3] 3R_17834617_SNP [dm6]	A	G	4.083e^-4	0.993	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	14069265	2L_14069265_SNP [dm3] 2L_14069265_SNP [dm6]	G	A	4.086e^-4	0.993	INTRON nAChRalpha5
2L	14813212	2L_14813212_SNP [dm3] 2L_14813212_SNP [dm6]	G	T	4.092e^-4	0.993	DOWNSTREAM CG33309 INTERGENIC
3R	4857613	3R_4857613_SNP [dm3] 3R_9031891_SNP [dm6]	G	T	4.094e^-4	0.993	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	4190206	2L_4190206_SNP [dm3] 2L_4190206_SNP [dm6]	A	G	4.094e^-4	0.993	SYNONYMOUS_CODING CG3714 DOWNSTREAM lectin-24Db	TF binding site mE1_TFBS_cad
3L	12317851	3L_12317851_SNP [dm3] 3L_12324751_SNP [dm6]	T	A	4.094e^-4	0.993	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_twi
3L	17629007	3L_17629007_SNP [dm3] 3L_17635907_SNP [dm6]	G	A	4.099e^-4	0.993	INTRON CG7497
2R	12109170	2R_12109170_DEL [dm3] 2R_16221665_DEL [dm6]	ATTA	A	4.103e^-4	0.993	SPLICE_SITE_DONOR mrj DOWNSTREAM CG7798 INTRON mrj EXON CR43898	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
3L	1637079	3L_1637079_SNP [dm3] 3L_1637079_SNP [dm6]	G	T	4.118e^-4	0.993	UTR_5_PRIME nSyb DOWNSTREAM metl	TF binding site mE1_TFBS_inv
2L	8267816	2L_8267816_DEL [dm3] 2L_8267816_DEL [dm6]	ACAA	A	4.128e^-4	0.993	INTRON Btk29A	TF binding site mE1_TFBS_D
3R	5430906	3R_5430906_SNP [dm3] 3R_9605184_SNP [dm6]	C	T	4.132e^-4	0.993	INTRON CG8312	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12820667	2R_12820667_SNP [dm3] 2R_16933162_SNP [dm6]	G	T	4.139e^-4	0.993	INTRON Pkc53E
2L	1686841	2L_1686841_SNP [dm3] 2L_1686841_SNP [dm6]	C	G	4.149e^-4	0.993	INTRON chinmo
2R	2758193	2R_2758193_SNP [dm3] 2R_6870688_SNP [dm6]	G	A	4.150e^-4	0.993	INTRON coro	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	4857748	3R_4857748_SNP [dm3] 3R_9032026_SNP [dm6]	A	C	4.179e^-4	0.993	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	3111268	3L_3111268_SNP [dm3] 3L_3111268_SNP [dm6]	G	T	4.189e^-4	0.993	UPSTREAM CG45066 DOWNSTREAM CG45067 INTERGENIC
3L	3778621	3L_3778621_SNP [dm3] 3L_3778621_SNP [dm6]	T	C	4.201e^-4	0.993	INTRON CG32264
2L	3763027	2L_3763027_SNP [dm3] 2L_3763027_SNP [dm6]	A	G	4.207e^-4	0.993	SPLICE_SITE_REGION CG43707 SYNONYMOUS_CODING CG43707	TF binding site mE1_TFBS_inv
2L	5783553	2L_5783553_SNP [dm3] 2L_5783553_SNP [dm6]	T	A	4.212e^-4	0.993	UPSTREAM CG31913 INTRON CG9171
X	10896513	X_10896513_SNP [dm3] X_11002480_SNP [dm6]	A	C	4.213e^-4	0.993	INTRON CG42339
X	2607479	X_2607479_INS [dm3] X_2713446_INS [dm6]	C	GAT	4.213e^-4	0.993	UPSTREAM CG2694 INTRON CG2685	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	2607481	X_2607481_INS [dm3] X_2713448_INS [dm6]	C	CAAAT	4.213e^-4	0.993	UPSTREAM CG2694 INTRON CG2685	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1844384	2L_1844384_SNP [dm3] 2L_1844384_SNP [dm6]	A	C	4.217e^-4	0.993	SYNONYMOUS_CODING wry	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8320962	2L_8320962_SNP [dm3] 2L_8320962_SNP [dm6]	A	T	4.217e^-4	0.993	UTR_3_PRIME CG7787 DOWNSTREAM CG7781	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2L	2674544	2L_2674544_SNP [dm3] 2L_2674544_SNP [dm6]	G	A	4.219e^-4	0.993	INTERGENIC
2L	13092360	2L_13092360_SNP [dm3] 2L_13092360_SNP [dm6]	C	G	4.233e^-4	0.993	INTERGENIC
2L	1038280	2L_1038280_SNP [dm3] 2L_1038280_SNP [dm6]	A	C	4.241e^-4	0.993	NON_SYNONYMOUS_CODING CG4415 INTRON IA-2	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	24479256	3R_24479256_SNP [dm3] 3R_28653534_SNP [dm6]	G	C	4.245e^-4	0.993	INTERGENIC
3L	1390781	3L_1390781_SNP [dm3] 3L_1390781_SNP [dm6]	G	A	4.246e^-4	0.993	INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15250905	2L_15250905_SNP [dm3] 2L_15250905_SNP [dm6]	T	C	4.250e^-4	0.993	INTRON dao	TF binding site mE1_TFBS_cad
2L	8120206	2L_8120206_SNP [dm3] 2L_8120206_SNP [dm6]	G	A	4.253e^-4	0.993	INTRON mon2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1201696	X_1201696_INS [dm3] X_1307663_INS [dm6]	C	CG	4.258e^-4	0.993	INTRON DAAM
X	8024307	X_8024307_SNP [dm3] X_8130274_SNP [dm6]	C	T	4.267e^-4	0.993	NON_SYNONYMOUS_CODING CG2116 UPSTREAM cyr INTRON cyr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	19108123	2R_19108123_SNP [dm3] 2R_23220600_SNP [dm6]	A	G	4.269e^-4	0.993	INTERGENIC
2L	13805779	2L_13805779_SNP [dm3] 2L_13805779_SNP [dm6]	C	G	4.271e^-4	0.993	INTRON CAH1
3R	18945116	3R_18945116_SNP [dm3] 3R_23119394_SNP [dm6]	A	C	4.275e^-4	0.993	INTRON CenB1A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9971967	2L_9971967_SNP [dm3] 2L_9971967_SNP [dm6]	G	T	4.276e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	6010469	2L_6010469_SNP [dm3] 2L_6010469_SNP [dm6]	G	C	4.303e^-4	0.993	SYNONYMOUS_CODING CG9098	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	10534893	2R_10534893_SNP [dm3] 2R_14647388_SNP [dm6]	C	T	4.318e^-4	0.993	INTERGENIC
2L	12619282	2L_12619282_SNP [dm3] 2L_12619282_SNP [dm6]	T	G	4.322e^-4	0.993	INTRON Ref2 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
X	22185868	X_22185868_SNP [dm3] X_22784032_SNP [dm6]	A	G	4.323e^-4	0.993	INTRON CR44997	transposable element FlyBase
2L	165314	2L_165314_SNP [dm3] 2L_165314_SNP [dm6]	T	C	4.325e^-4	0.993	INTRON spen	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1853599	3L_1853599_SNP [dm3] 3L_1853599_SNP [dm6]	C	T	4.326e^-4	0.993	INTRON CG13936
2R	16756231	2R_16756231_SNP [dm3] 2R_20868726_SNP [dm6]	G	A	4.327e^-4	0.993	UTR_3_PRIME IM4 DOWNSTREAM IM4
X	20253719	X_20253719_SNP [dm3] X_20382692_SNP [dm6]	C	G	4.342e^-4	0.993	DOWNSTREAM CR34311 INTERGENIC	transposable element FlyBase
2L	3691652	2L_3691652_SNP [dm3] 2L_3691652_SNP [dm6]	C	A	4.343e^-4	0.993	UTR_3_PRIME CG34340 DOWNSTREAM CG16704
3R	9830427	3R_9830427_SNP [dm3] 3R_14004705_SNP [dm6]	G	T	4.344e^-4	0.993	INTRON rdx
2L	8205362	2L_8205362_SNP [dm3] 2L_8205362_SNP [dm6]	A	G	4.361e^-4	0.993	UPSTREAM SLC5A11 & 1 other DOWNSTREAM CR44120 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	16647383	2R_16647383_SNP [dm3] 2R_20759878_SNP [dm6]	A	G	4.365e^-4	0.993	INTERGENIC
X	11418676	X_11418676_DEL [dm3] X_11524643_DEL [dm6]	AA	A	4.376e^-4	0.993	INTRON Drak
2L	14922122	2L_14922122_SNP [dm3] 2L_14922122_SNP [dm6]	A	T	4.377e^-4	0.993	INTRON CG42313	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	6998289	3L_6998289_SNP [dm3] 3L_7005189_SNP [dm6]	G	A	4.381e^-4	0.993	INTRON Mp
2R	11533377	2R_11533377_INS [dm3] 2R_15645872_INS [dm6]	T	TTT	4.383e^-4	0.993	INTRON CG42524
3L	14996200	3L_14996200_SNP [dm3] 3L_15003100_SNP [dm6]	T	C	4.389e^-4	0.993	SYNONYMOUS_CODING Reck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7243274	3L_7243274_SNP [dm3] 3L_7250174_SNP [dm6]	C	A	4.411e^-4	0.993	UPSTREAM Cdc27 & 1 other DOWNSTREAM CG14830 INTRON MED4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	1513819	3L_1513819_SNP [dm3] 3L_1513819_SNP [dm6]	T	C	4.428e^-4	0.993	INTRON Psa & 1 other
2L	7070750	2L_7070750_SNP [dm3] 2L_7070750_SNP [dm6]	T	C	4.431e^-4	0.993	SYNONYMOUS_CODING Pvf2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	8539956	X_8539956_SNP [dm3] X_8645923_SNP [dm6]	A	G	4.441e^-4	0.993	INTRON oc
3R	18409659	3R_18409659_SNP [dm3] 3R_22583937_SNP [dm6]	T	A	4.442e^-4	0.993	SPLICE_SITE_REGION CG33107 UPSTREAM Dph5 & 1 other INTRON CG33107	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	3037490	3L_3037490_SNP [dm3] 3L_3037490_SNP [dm6]	T	C	4.447e^-4	0.993	UPSTREAM CG2162 INTRON CG2162	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	7768429	2R_7768429_SNP [dm3] 2R_11880924_SNP [dm6]	T	C	4.452e^-4	0.993	SYNONYMOUS_CODING CG13185
X	9675993	X_9675993_SNP [dm3] X_9781960_SNP [dm6]	G	T	4.456e^-4	0.993	UTR_3_PRIME CG1354 DOWNSTREAM CG1354	TF binding site mE1_TFBS_cad
X	6427433	X_6427433_SNP [dm3] X_6533400_SNP [dm6]	T	A	4.458e^-4	0.993	UPSTREAM RpL7A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2R	16647377	2R_16647377_SNP [dm3] 2R_20759872_SNP [dm6]	C	A	4.466e^-4	0.993	INTERGENIC
3R	9043065	3R_9043065_SNP [dm3] 3R_13217343_SNP [dm6]	A	G	4.478e^-4	0.993	INTERGENIC
2L	2820814	2L_2820814_SNP [dm3] 2L_2820814_SNP [dm6]	G	A	4.484e^-4	0.993	SYNONYMOUS_CODING Duox	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19171676	2R_19171676_SNP [dm3] 2R_23284153_SNP [dm6]	A	G	4.496e^-4	0.993	UPSTREAM CG13541 & 1 other INTERGENIC
2R	19059740	2R_19059740_SNP [dm3] 2R_23172217_SNP [dm6]	G	T	4.497e^-4	0.993	INTRON CG34371	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	17326057	X_17326057_SNP [dm3] X_17432024_SNP [dm6]	T	C	4.513e^-4	0.993	INTRON CG12994
2L	3401735	2L_3401735_SNP [dm3] 2L_3401735_SNP [dm6]	G	C	4.519e^-4	0.993	INTERGENIC
3R	14140790	3R_14140790_SNP [dm3] 3R_18315068_SNP [dm6]	C	T	4.530e^-4	0.993	UPSTREAM PKD INTERGENIC
2R	8702663	2R_8702663_DEL [dm3] 2R_12815158_DEL [dm6]	ACAGGCAGA	A	4.535e^-4	0.993	INTERGENIC
2L	3057483	2L_3057483_SNP [dm3] 2L_3057483_SNP [dm6]	A	G	4.550e^-4	0.993	INTRON CG3523	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3057484	2L_3057484_SNP [dm3] 2L_3057484_SNP [dm6]	T	A	4.550e^-4	0.993	INTRON CG3523	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18435280	2R_18435280_SNP [dm3] 2R_22547775_SNP [dm6]	C	A	4.560e^-4	0.993	INTRON px
2R	13286987	2R_13286987_SNP [dm3] 2R_17399482_SNP [dm6]	T	A	4.570e^-4	0.993	INTRON Sip1
2L	3710379	2L_3710379_SNP [dm3] 2L_3710379_SNP [dm6]	G	C	4.571e^-4	0.993	SYNONYMOUS_CODING cutlet	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7953234	3L_7953234_SNP [dm3] 3L_7960134_SNP [dm6]	T	C	4.582e^-4	0.993	INTERGENIC
3L	11810301	3L_11810301_SNP [dm3] 3L_11817201_SNP [dm6]	G	C	4.582e^-4	0.993	SYNONYMOUS_CODING CG5946 UTR_3_PRIME CG5946 DOWNSTREAM CG5946 & 1 other
2L	4280268	2L_4280268_SNP [dm3] 2L_4280268_SNP [dm6]	A	G	4.586e^-4	0.993	UPSTREAM Art2 INTRON Art2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	1077986	2L_1077986_SNP [dm3] 2L_1077986_SNP [dm6]	T	C	4.599e^-4	0.993	UTR_5_PRIME ast UPSTREAM S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_sens mE1_TFBS_Trl
2L	1030200	2L_1030200_SNP [dm3] 2L_1030200_SNP [dm6]	C	T	4.618e^-4	0.993	INTRON IA-2
3L	17248899	3L_17248899_SNP [dm3] 3L_17255799_SNP [dm6]	A	C	4.618e^-4	0.993	INTRON CR43870	TF binding site BDTNP1_TFBS_dl
3R	8679849	3R_8679849_SNP [dm3] 3R_12854127_SNP [dm6]	G	A	4.619e^-4	0.993	INTERGENIC
3R	18409716	3R_18409716_SNP [dm3] 3R_22583994_SNP [dm6]	C	T	4.635e^-4	0.993	SYNONYMOUS_CODING CG33107 UPSTREAM Dph5 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	18847264	3R_18847264_SNP [dm3] 3R_23021542_SNP [dm6]	A	G	4.636e^-4	0.993	UTR_3_PRIME lmd
3R	12653895	3R_12653895_SNP [dm3] 3R_16828173_SNP [dm6]	C	T	4.650e^-4	0.993	UPSTREAM abd-A INTRON abd-A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	15404822	2R_15404822_INS [dm3] 2R_19517317_INS [dm6]	A	TTG	4.677e^-4	0.993	DOWNSTREAM sm INTERGENIC
X	13066989	X_13066989_SNP [dm3] X_13172956_SNP [dm6]	A	G	4.682e^-4	0.993	NON_SYNONYMOUS_CODING CG34411	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23128898	3R_23128898_SNP [dm3] 3R_27303176_SNP [dm6]	A	G	4.688e^-4	0.993	SYNONYMOUS_CODING CG3339
3R	23128907	3R_23128907_SNP [dm3] 3R_27303185_SNP [dm6]	C	G	4.688e^-4	0.993	SYNONYMOUS_CODING CG3339
2L	10169046	2L_10169046_SNP [dm3] 2L_10169046_SNP [dm6]	C	G	4.700e^-4	0.993	INTRON CG44153
2R	19854648	2R_19854648_SNP [dm3] 2R_23967125_SNP [dm6]	G	A	4.714e^-4	0.993	UTR_3_PRIME CG34213 UPSTREAM or DOWNSTREAM Alas
2R	20156841	2R_20156841_SNP [dm3] 2R_24269318_SNP [dm6]	C	T	4.733e^-4	0.993	UPSTREAM CG13577 INTERGENIC
3R	20956328	3R_20956328_SNP [dm3] 3R_25130606_SNP [dm6]	G	A	4.741e^-4	0.993	SYNONYMOUS_CODING Clbn UPSTREAM Bili
2L	5371301	2L_5371301_SNP [dm3] 2L_5371301_SNP [dm6]	C	G	4.744e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5159087	2L_5159087_SNP [dm3] 2L_5159087_SNP [dm6]	G	A	4.746e^-4	0.993	SYNONYMOUS_CODING Msp300 DOWNSTREAM Msp300 INTRON Msp300
2R	12408003	2R_12408003_SNP [dm3] 2R_16520498_SNP [dm6]	G	A	4.770e^-4	0.993	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	8637222	X_8637222_SNP [dm3] X_8743189_SNP [dm6]	T	A	4.772e^-4	0.993	INTERGENIC
X	5387542	X_5387542_SNP [dm3] X_5493509_SNP [dm6]	T	A	4.773e^-4	0.993	UTR_3_PRIME SPR & 1 other DOWNSTREAM frma
3R	18409704	3R_18409704_SNP [dm3] 3R_22583982_SNP [dm6]	T	G	4.777e^-4	0.993	SPLICE_SITE_REGION CG33107 UPSTREAM Dph5 & 1 other INTRON CG33107	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	16795327	2L_16795327_SNP [dm3] 2L_16795327_SNP [dm6]	A	C	4.782e^-4	0.993	SYNONYMOUS_CODING Ugt36Ba
2R	8138561	2R_8138561_SNP [dm3] 2R_12251056_SNP [dm6]	G	T	4.785e^-4	0.993	INTERGENIC
3L	1586347	3L_1586347_SNP [dm3] 3L_1586347_SNP [dm6]	A	G	4.786e^-4	0.993	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2R	16756259	2R_16756259_SNP [dm3] 2R_20868754_SNP [dm6]	G	A	4.787e^-4	0.993	UTR_3_PRIME IM4 DOWNSTREAM IM4
2R	16756262	2R_16756262_SNP [dm3] 2R_20868757_SNP [dm6]	C	T	4.787e^-4	0.993	UTR_3_PRIME IM4 DOWNSTREAM IM4
2R	16756265	2R_16756265_SNP [dm3] 2R_20868760_SNP [dm6]	T	A	4.787e^-4	0.993	UTR_3_PRIME IM4 DOWNSTREAM IM4
2R	17433490	2R_17433490_SNP [dm3] 2R_21545985_SNP [dm6]	T	C	4.787e^-4	0.993	UPSTREAM Egfr INTRON Egfr	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	15888846	2L_15888846_SNP [dm3] 2L_15888846_SNP [dm6]	G	A	4.793e^-4	0.993	SYNONYMOUS_CODING Tep1 DOWNSTREAM CR31824
2L	10074688	2L_10074688_SNP [dm3] 2L_10074688_SNP [dm6]	C	T	4.795e^-4	0.993	INTRON CG44153
3L	1589034	3L_1589034_SNP [dm3] 3L_1589034_SNP [dm6]	A	T	4.796e^-4	0.993	INTRON CG13917
X	20468975	X_20468975_SNP [dm3] X_20597948_SNP [dm6]	G	A	4.802e^-4	0.993	INTRON RunxA
X	6302738	X_6302738_SNP [dm3] X_6408705_SNP [dm6]	G	A	4.815e^-4	0.993	INTERGENIC
2L	4224298	2L_4224298_SNP [dm3] 2L_4224298_SNP [dm6]	T	C	4.834e^-4	0.993	DOWNSTREAM CG3702 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	11732253	2L_11732253_SNP [dm3] 2L_11732253_SNP [dm6]	T	A	4.848e^-4	0.993	INTERGENIC
2R	618774	2R_618774_SNP [dm3] 2R_4731269_SNP [dm6]	A	G	4.848e^-4	0.993	UPSTREAM CR41440 & 1 other EXON CR45471
X	18375171	X_18375171_SNP [dm3] X_18481138_SNP [dm6]	A	T	4.848e^-4	0.993	DOWNSTREAM CR45714 INTRON Hayan
3R	8820349	3R_8820349_SNP [dm3] 3R_12994627_SNP [dm6]	C	A	4.852e^-4	0.993	SYNONYMOUS_CODING yellow-f2 UPSTREAM CG7488
2L	15424637	2L_15424637_SNP [dm3] 2L_15424637_SNP [dm6]	T	C	4.866e^-4	0.993	NON_SYNONYMOUS_CODING wor	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	17744070	3L_17744070_SNP [dm3] 3L_17750970_SNP [dm6]	T	A	4.874e^-4	0.993	UPSTREAM Adgf-B DOWNSTREAM Adgf-A INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	9093909	2L_9093909_SNP [dm3] 2L_9093909_SNP [dm6]	G	T	4.874e^-4	0.993	INTERGENIC
X	10977925	X_10977925_SNP [dm3] X_11083892_SNP [dm6]	G	A	4.880e^-4	0.993	SYNONYMOUS_CODING sev	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26669490	3R_26669490_SNP [dm3] 3R_30843768_SNP [dm6]	T	A	4.881e^-4	0.993	INTERGENIC
2R	19240207	2R_19240207_SNP [dm3] 2R_23352684_SNP [dm6]	G	C	4.881e^-4	0.993	DOWNSTREAM CG34210 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6349445	2L_6349445_SNP [dm3] 2L_6349445_SNP [dm6]	A	C	4.882e^-4	0.993	UTR_3_PRIME CG9498
3R	14990962	3R_14990962_SNP [dm3] 3R_19165240_SNP [dm6]	G	A	4.884e^-4	0.993	INTRON sqz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	14249605	3L_14249605_SNP [dm3] 3L_14256505_SNP [dm6]	C	G	4.894e^-4	0.993	INTERGENIC
2L	13910349	2L_13910349_SNP [dm3] 2L_13910349_SNP [dm6]	A	G	4.901e^-4	0.993	SYNONYMOUS_CODING Ance-2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16310789	3L_16310789_SNP [dm3] 3L_16317689_SNP [dm6]	G	A	4.913e^-4	0.993	UPSTREAM Nplp3 INTERGENIC
3R	10726215	3R_10726215_SNP [dm3] 3R_14900493_SNP [dm6]	G	A	4.919e^-4	0.993	UTR_3_PRIME RpS5b UPSTREAM VhaPPA1-2 DOWNSTREAM CG3817	TF binding site mE1_TFBS_chinmo
2L	1460456	2L_1460456_SNP [dm3] 2L_1460456_SNP [dm6]	T	C	4.926e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_inv
X	13067108	X_13067108_SNP [dm3] X_13173075_SNP [dm6]	T	G	4.947e^-4	0.993	SYNONYMOUS_CODING CG34411	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15954654	2L_15954654_SNP [dm3] 2L_15954654_SNP [dm6]	T	A	4.950e^-4	0.993	INTRON beat-Ib	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	7859284	2L_7859284_SNP [dm3] 2L_7859284_SNP [dm6]	A	G	4.955e^-4	0.993	UTR_3_PRIME lectin-28C INTRON TwdlE	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14005965	3L_14005965_SNP [dm3] 3L_14012865_SNP [dm6]	A	T	4.955e^-4	0.993	SYNONYMOUS_CODING upSET	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14728033	3R_14728033_DEL [dm3] 3R_18902311_DEL [dm6]	AA	C	4.957e^-4	0.993	UPSTREAM CG14294 DOWNSTREAM CG34284 INTERGENIC
3L	2209117	3L_2209117_SNP [dm3] 3L_2209117_SNP [dm6]	G	C	4.962e^-4	0.993	INTERGENIC
3L	17629002	3L_17629002_SNP [dm3] 3L_17635902_SNP [dm6]	A	T	4.967e^-4	0.993	INTRON CG7497
3L	18328473	3L_18328473_INS [dm3] 3L_18335373_INS [dm6]	A	ACATGTAGACGGGAAGCGG...	4.968e^-4	0.993	INTERGENIC
3R	9840029	3R_9840029_SNP [dm3] 3R_14014307_SNP [dm6]	A	T	4.978e^-4	0.993	INTRON rdx	TF binding site BDTNP1_TFBS_dl
3L	1094052	3L_1094052_SNP [dm3] 3L_1094052_SNP [dm6]	G	T	4.980e^-4	0.993	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	1590899	3L_1590899_SNP [dm3] 3L_1590899_SNP [dm6]	T	A	4.982e^-4	0.993	INTRON CG13917
2R	18408269	2R_18408269_SNP [dm3] 2R_22520764_SNP [dm6]	T	A	4.982e^-4	0.993	INTRON px	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12775701	2R_12775701_SNP [dm3] 2R_16888196_SNP [dm6]	T	A	4.982e^-4	0.993	INTRON CG8910
2L	5910819	2L_5910819_SNP [dm3] 2L_5910819_SNP [dm6]	T	A	4.991e^-4	0.993	UPSTREAM CG14000 INTRON bchs	TF binding site BDTNP1_TFBS_da
3R	12711517	3R_12711517_SNP [dm3] 3R_16885795_SNP [dm6]	A	C	4.996e^-4	0.993	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	9254034	X_9254034_SNP [dm3] X_9360001_SNP [dm6]	A	C	5.002e^-4	0.993	UTR_3_PRIME mgl
2R	17027615	2R_17027615_SNP [dm3] 2R_21140110_SNP [dm6]	T	C	5.004e^-4	0.993	UPSTREAM Magi INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12838826	3L_12838826_SNP [dm3] 3L_12845726_SNP [dm6]	A	G	5.006e^-4	0.993	SPLICE_SITE_REGION CG10948 INTRON CG10948
2L	8920457	2L_8920457_SNP [dm3] 2L_8920457_SNP [dm6]	T	A	5.007e^-4	0.993	INTRON CG34398
X	17328681	X_17328681_SNP [dm3] X_17434648_SNP [dm6]	G	A	5.016e^-4	0.993	INTRON CG12994
3R	13673489	3R_13673489_INS [dm3] 3R_17847767_INS [dm6]	G	GGTCGCACAG	5.020e^-4	0.993	INTRON tinc
3R	17610733	3R_17610733_SNP [dm3] 3R_21785011_SNP [dm6]	T	C	5.021e^-4	0.993	UTR_3_PRIME CASK DOWNSTREAM CASK EXON CRG	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	11867916	2L_11867916_SNP [dm3] 2L_11867916_SNP [dm6]	A	C	5.031e^-4	0.993	INTRON Pde1c
2R	19216609	2R_19216609_SNP [dm3] 2R_23329086_SNP [dm6]	G	A	5.040e^-4	0.993	DOWNSTREAM CG30413 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	2676967	2L_2676967_SNP [dm3] 2L_2676967_SNP [dm6]	T	C	5.043e^-4	0.993	UPSTREAM CG31690 INTERGENIC
3R	19061651	3R_19061651_INS [dm3] 3R_23235929_INS [dm6]	G	GTGTG	5.044e^-4	0.993	INTRON CG4467
3R	10726207	3R_10726207_DEL [dm3] 3R_14900485_DEL [dm6]	GTAAG	G	5.045e^-4	0.993	UTR_3_PRIME RpS5b UPSTREAM VhaPPA1-2 DOWNSTREAM CG3817	TF binding site mE1_TFBS_chinmo
X	10977931	X_10977931_SNP [dm3] X_11083898_SNP [dm6]	C	T	5.050e^-4	0.993	SYNONYMOUS_CODING sev	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16750909	3L_16750909_SNP [dm3] 3L_16757809_SNP [dm6]	C	G	5.059e^-4	0.993	INTERGENIC
3R	22741095	3R_22741095_SNP [dm3] 3R_26915373_SNP [dm6]	T	C	5.063e^-4	0.993	UPSTREAM sda INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25852732	3R_25852732_DEL [dm3] 3R_30027010_DEL [dm6]	AAG	T	5.064e^-4	0.993	UPSTREAM Axn INTRON Axn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25852737	3R_25852737_DEL [dm3] 3R_30027015_DEL [dm6]	AGAATATTTACAATT...	A	5.064e^-4	0.993	UPSTREAM Axn INTRON Axn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25852798	3R_25852798_SNP [dm3] 3R_30027076_SNP [dm6]	A	T	5.064e^-4	0.993	UPSTREAM Axn INTRON Axn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18394911	2R_18394911_SNP [dm3] 2R_22507406_SNP [dm6]	G	A	5.066e^-4	0.993	INTRON px	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1513765	3L_1513765_SNP [dm3] 3L_1513765_SNP [dm6]	A	G	5.067e^-4	0.993	INTRON Psa & 1 other
3L	11051633	3L_11051633_SNP [dm3] 3L_11058533_SNP [dm6]	C	G	5.071e^-4	0.993	SYNONYMOUS_CODING CG7888 DOWNSTREAM CG6321	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1589076	3L_1589076_SNP [dm3] 3L_1589076_SNP [dm6]	C	G	5.081e^-4	0.993	INTRON CG13917
3R	11207844	3R_11207844_SNP [dm3] 3R_15382122_SNP [dm6]	G	A	5.093e^-4	0.993	SYNONYMOUS_CODING h-cup UPSTREAM Rbp INTRON Rbp
3L	10764136	3L_10764136_SNP [dm3] 3L_10771036_SNP [dm6]	T	C	5.099e^-4	0.993	UPSTREAM CG43245 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
3R	10507056	3R_10507056_SNP [dm3] 3R_14681334_SNP [dm6]	T	C	5.100e^-4	0.993	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20464271	X_20464271_SNP [dm3] X_20593244_SNP [dm6]	T	A	5.105e^-4	0.993	INTRON RunxA
3L	7883885	3L_7883885_SNP [dm3] 3L_7890785_SNP [dm6]	A	T	5.113e^-4	0.993	INTRON CG32365	TF binding site mE1_TFBS_HSA
2R	16647346	2R_16647346_SNP [dm3] 2R_20759841_SNP [dm6]	T	G	5.114e^-4	0.993	INTERGENIC
X	16936445	X_16936445_SNP [dm3] X_17042412_SNP [dm6]	A	T	5.114e^-4	0.993	INTRON CG45002
2L	2674537	2L_2674537_SNP [dm3] 2L_2674537_SNP [dm6]	A	C	5.126e^-4	0.993	INTERGENIC
2L	14667468	2L_14667468_SNP [dm3] 2L_14667468_SNP [dm6]	C	T	5.127e^-4	0.993	INTRON osp
2L	10189778	2L_10189778_SNP [dm3] 2L_10189778_SNP [dm6]	G	A	5.130e^-4	0.993	DOWNSTREAM CG31874 INTRON Sur
2R	9754211	2R_9754211_SNP [dm3] 2R_13866706_SNP [dm6]	G	A	5.131e^-4	0.993	SYNONYMOUS_CODING shot
2L	8803873	2L_8803873_SNP [dm3] 2L_8803873_SNP [dm6]	G	A	5.138e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18812988	3R_18812988_SNP [dm3] 3R_22987266_SNP [dm6]	T	C	5.144e^-4	0.993	UPSTREAM Or94a INTRON Nha2
3R	11443113	3R_11443113_SNP [dm3] 3R_15617391_SNP [dm6]	T	A	5.150e^-4	0.993	INTERGENIC
3R	11443114	3R_11443114_DEL [dm3] 3R_15617392_DEL [dm6]	TG	T	5.150e^-4	0.993	INTERGENIC
3R	11443117	3R_11443117_DEL [dm3] 3R_15617395_DEL [dm6]	ATTGC	A	5.150e^-4	0.993	INTERGENIC
3L	12483036	3L_12483036_SNP [dm3] 3L_12489936_SNP [dm6]	A	G	5.168e^-4	0.993	SYNONYMOUS_CODING CG10660 UPSTREAM CR45681	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	24484093	3R_24484093_SNP [dm3] 3R_28658371_SNP [dm6]	G	A	5.174e^-4	0.993	INTERGENIC
2R	12400600	2R_12400600_SNP [dm3] 2R_16513095_SNP [dm6]	C	T	5.174e^-4	0.993	INTRON Sema-2a
X	1050333	X_1050333_SNP [dm3] X_1156300_SNP [dm6]	C	G	5.180e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	19302867	2R_19302867_SNP [dm3] 2R_23415344_SNP [dm6]	G	A	5.185e^-4	0.993	UPSTREAM CG30411 INTRON CG9812	TF binding site mE1_TFBS_Trl
3R	26856725	3R_26856725_SNP [dm3] 3R_31031003_SNP [dm6]	G	C	5.198e^-4	0.993	INTERGENIC
3L	7963126	3L_7963126_INS [dm3] 3L_7970026_INS [dm6]	T	TT	5.200e^-4	0.993	UPSTREAM RNaseX25 INTERGENIC	TF binding site mE1_TFBS_inv
X	21241201	X_21241201_SNP [dm3] X_21370174_SNP [dm6]	C	G	5.201e^-4	0.993	SYNONYMOUS_CODING bbx UTR_3_PRIME waw	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6149292	2R_6149292_SNP [dm3] 2R_10261787_SNP [dm6]	A	C	5.201e^-4	0.993	DOWNSTREAM CG12911 & 1 other EXON CR30009
2R	18408260	2R_18408260_INS [dm3] 2R_22520755_INS [dm6]	A	AGCAAAAATCAA...	5.203e^-4	0.993	INTRON px	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17207097	X_17207097_SNP [dm3] X_17313064_SNP [dm6]	C	T	5.216e^-4	0.993	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	4410814	2R_4410814_SNP [dm3] 2R_8523309_SNP [dm6]	T	A	5.220e^-4	0.993	INTRON mtt
3L	14076463	3L_14076463_SNP [dm3] 3L_14083363_SNP [dm6]	C	A	5.221e^-4	0.993	UPSTREAM CG8100 DOWNSTREAM btl INTERGENIC
X	3178745	X_3178745_SNP [dm3] X_3284712_SNP [dm6]	T	A	5.232e^-4	0.993	INTRON dnc
3R	22947845	3R_22947845_SNP [dm3] 3R_27122123_SNP [dm6]	A	G	5.235e^-4	0.993	SYNONYMOUS_CODING CG6059 DOWNSTREAM CG5882	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7494598	2R_7494598_SNP [dm3] 2R_11607093_SNP [dm6]	A	G	5.240e^-4	0.993	INTRON tou	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14787308	3R_14787308_SNP [dm3] 3R_18961586_SNP [dm6]	G	T	5.242e^-4	0.993	INTRON CG42613 & 1 other
X	9226867	X_9226867_SNP [dm3] X_9332834_SNP [dm6]	A	G	5.252e^-4	0.993	INTRON CG34449
3L	3254800	3L_3254800_SNP [dm3] 3L_3254800_SNP [dm6]	A	C	5.256e^-4	0.993	DOWNSTREAM CR43626 INTERGENIC
X	3433901	X_3433901_SNP [dm3] X_3539868_SNP [dm6]	T	G	5.258e^-4	0.993	INTRON CG32791
3R	22380973	3R_22380973_SNP [dm3] 3R_26555251_SNP [dm6]	G	A	5.276e^-4	0.993	SYNONYMOUS_CODING scrib
3R	11707934	3R_11707934_SNP [dm3] 3R_15882212_SNP [dm6]	G	A	5.277e^-4	0.993	INTERGENIC
3L	6042504	3L_6042504_SNP [dm3] 3L_6049404_SNP [dm6]	G	C	5.281e^-4	0.993	INTERGENIC
3R	16141387	3R_16141387_SNP [dm3] 3R_20315665_SNP [dm6]	A	C	5.291e^-4	0.993	INTRON CG42668
3R	22614288	3R_22614288_SNP [dm3] 3R_26788566_SNP [dm6]	C	T	5.294e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18868053	3R_18868053_SNP [dm3] 3R_23042331_SNP [dm6]	A	C	5.297e^-4	0.993	UTR_5_PRIME CG13838 DOWNSTREAM CR44226	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3778867	3L_3778867_SNP [dm3] 3L_3778867_SNP [dm6]	T	C	5.303e^-4	0.993	INTRON CG32264
2R	14551310	2R_14551310_SNP [dm3] 2R_18663805_SNP [dm6]	G	A	5.310e^-4	0.993	DOWNSTREAM CG33136 INTERGENIC
3L	10846975	3L_10846975_SNP [dm3] 3L_10853875_SNP [dm6]	T	A	5.310e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	5198368	3L_5198368_SNP [dm3] 3L_5205268_SNP [dm6]	G	A	5.311e^-4	0.993	INTRON shep
2L	47087	2L_47087_DEL [dm3] 2L_47087_DEL [dm6]	TATCT	T	5.318e^-4	0.993	INTRON Cda5	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	4912088	3R_4912088_SNP [dm3] 3R_9086366_SNP [dm6]	A	C	5.320e^-4	0.993	INTRON pum
2R	14156195	2R_14156195_SNP [dm3] 2R_18268690_SNP [dm6]	G	A	5.335e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	17864617	3R_17864617_SNP [dm3] 3R_22038895_SNP [dm6]	T	A	5.337e^-4	0.993	UTR_3_PRIME pit DOWNSTREAM pit
X	5362657	X_5362657_SNP [dm3] X_5468624_SNP [dm6]	T	A	5.343e^-4	0.993	INTRON SPR
2R	10473170	2R_10473170_SNP [dm3] 2R_14585665_SNP [dm6]	G	A	5.344e^-4	0.993	UTR_3_PRIME ttv DOWNSTREAM ttv
3R	19523470	3R_19523470_SNP [dm3] 3R_23697748_SNP [dm6]	G	A	5.349e^-4	0.993	SYNONYMOUS_CODING prt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10610012	3R_10610012_SNP [dm3] 3R_14784290_SNP [dm6]	C	T	5.360e^-4	0.993	INTRON jvl
2R	10534889	2R_10534889_SNP [dm3] 2R_14647384_SNP [dm6]	T	G	5.365e^-4	0.993	INTERGENIC
X	12754792	X_12754792_INS [dm3] X_12860759_INS [dm6]	A	AGTTATTC	5.370e^-4	0.993	INTRON Pde9
3R	11438345	3R_11438345_SNP [dm3] 3R_15612623_SNP [dm6]	G	A	5.385e^-4	0.993	INTERGENIC
2L	9867891	2L_9867891_SNP [dm3] 2L_9867891_SNP [dm6]	G	A	5.391e^-4	0.993	INTRON nAChRalpha6
3L	3038614	3L_3038614_SNP [dm3] 3L_3038614_SNP [dm6]	G	A	5.417e^-4	0.993	INTRON CG2162	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5900537	X_5900537_SNP [dm3] X_6006504_SNP [dm6]	G	A	5.421e^-4	0.993	DOWNSTREAM CR44498 INTERGENIC
2R	3313900	2R_3313900_SNP [dm3] 2R_7426395_SNP [dm6]	T	G	5.425e^-4	0.993	INTRON so	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3691568	2L_3691568_SNP [dm3] 2L_3691568_SNP [dm6]	C	T	5.432e^-4	0.993	UTR_3_PRIME CG34340 DOWNSTREAM CG16704
3L	3496199	3L_3496199_SNP [dm3] 3L_3496199_SNP [dm6]	C	T	5.434e^-4	0.993	INTRON CG42324
3R	24049445	3R_24049445_SNP [dm3] 3R_28223723_SNP [dm6]	G	A	5.436e^-4	0.993	INTRON CG34354
3R	22380964	3R_22380964_SNP [dm3] 3R_26555242_SNP [dm6]	C	T	5.439e^-4	0.993	SYNONYMOUS_CODING scrib
3R	22000147	3R_22000147_INS [dm3] 3R_26174425_INS [dm6]	G	GGCCTG	5.461e^-4	0.993	INTRON CG31323
3R	8990896	3R_8990896_SNP [dm3] 3R_13165174_SNP [dm6]	G	A	5.469e^-4	0.993	INTERGENIC
3L	4144300	3L_4144300_SNP [dm3] 3L_4144300_SNP [dm6]	C	A	5.470e^-4	0.993	INTRON CG32260
2L	21884212	2L_21884212_SNP [dm3] 2L_21884212_SNP [dm6]	C	T	5.474e^-4	0.993	INTERGENIC
2L	8818371	2L_8818371_SNP [dm3] 2L_8818371_SNP [dm6]	A	G	5.485e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	4954643	3R_4954643_SNP [dm3] 3R_9128921_SNP [dm6]	C	T	5.508e^-4	0.993	INTRON pum	TF binding site mE1_TFBS_Trl
2L	9368774	2L_9368774_SNP [dm3] 2L_9368774_SNP [dm6]	G	T	5.527e^-4	0.993	DOWNSTREAM CG34181 INTERGENIC
3R	13907688	3R_13907688_SNP [dm3] 3R_18081966_SNP [dm6]	C	T	5.528e^-4	0.993	SYNONYMOUS_CODING CG14317	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23224424	3R_23224424_SNP [dm3] 3R_27398702_SNP [dm6]	A	T	5.534e^-4	0.993	INTRON side
3L	8373537	3L_8373537_SNP [dm3] 3L_8380437_SNP [dm6]	C	A	5.542e^-4	0.993	DOWNSTREAM ImpE1 INTRON ImpE1
X	16785240	X_16785240_DEL [dm3] X_16891207_DEL [dm6]	TCAT	A	5.544e^-4	0.993	DOWNSTREAM CG13002 INTERGENIC
X	18101916	X_18101916_INS [dm3] X_18207883_INS [dm6]	T	TC	5.558e^-4	0.993	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19486823	3R_19486823_SNP [dm3] 3R_23661101_SNP [dm6]	A	C	5.569e^-4	0.993	INTRON CG31145
3R	23577739	3R_23577739_SNP [dm3] 3R_27752017_SNP [dm6]	C	A	5.571e^-4	0.993	INTERGENIC
X	22185425	X_22185425_SNP [dm3] X_22783589_SNP [dm6]	C	A	5.575e^-4	0.993	INTRON CR44997
2R	17219734	2R_17219734_SNP [dm3] 2R_21332229_SNP [dm6]	G	T	5.575e^-4	0.993	SYNONYMOUS_CODING dom DOWNSTREAM snoRNA:Me28S-A2589c	TF binding site mE1_TFBS_cad
2R	618739	2R_618739_SNP [dm3] 2R_4731234_SNP [dm6]	C	G	5.579e^-4	0.993	UPSTREAM CR41440 EXON CR40282 & 1 other
3L	9551205	3L_9551205_SNP [dm3] 3L_9558105_SNP [dm6]	C	T	5.581e^-4	0.993	INTRON CG42673
X	1647704	X_1647704_SNP [dm3] X_1753671_SNP [dm6]	A	G	5.581e^-4	0.993	INTRON Scgdelta	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18861887	3R_18861887_SNP [dm3] 3R_23036165_SNP [dm6]	G	T	5.591e^-4	0.993	UPSTREAM CG13833 INTERGENIC
2R	4922418	2R_4922418_SNP [dm3] 2R_9034913_SNP [dm6]	A	T	5.591e^-4	0.993	INTERGENIC
3R	10781901	3R_10781901_SNP [dm3] 3R_14956179_SNP [dm6]	T	C	5.596e^-4	0.993	INTERGENIC
3R	13597992	3R_13597992_SNP [dm3] 3R_17772270_SNP [dm6]	G	A	5.604e^-4	0.993	INTRON CG43102
3L	3037414	3L_3037414_SNP [dm3] 3L_3037414_SNP [dm6]	A	G	5.612e^-4	0.993	UPSTREAM CG2162 INTRON CG2162	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14140709	3R_14140709_SNP [dm3] 3R_18314987_SNP [dm6]	C	T	5.613e^-4	0.993	UPSTREAM PKD INTERGENIC
3R	14992026	3R_14992026_SNP [dm3] 3R_19166304_SNP [dm6]	A	C	5.615e^-4	0.993	INTRON sqz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	3463485	2L_3463485_SNP [dm3] 2L_3463485_SNP [dm6]	C	T	5.629e^-4	0.993	SYNONYMOUS_CODING msl-2 UPSTREAM mir-4971	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	8325673	2L_8325673_SNP [dm3] 2L_8325673_SNP [dm6]	G	T	5.634e^-4	0.993	UPSTREAM CG7781 INTERGENIC
3L	1834881	3L_1834881_SNP [dm3] 3L_1834881_SNP [dm6]	G	T	5.637e^-4	0.993	SYNONYMOUS_CODING Cpr62Bb	TF binding site mE1_TFBS_inv
2L	3402534	2L_3402534_SNP [dm3] 2L_3402534_SNP [dm6]	A	G	5.642e^-4	0.993	INTERGENIC
3L	8000990	3L_8000990_SNP [dm3] 3L_8007890_SNP [dm6]	C	T	5.650e^-4	0.993	INTRON nmo
2R	14884306	2R_14884306_SNP [dm3] 2R_18996801_SNP [dm6]	A	G	5.654e^-4	0.993	INTRON tn
2R	12607407	2R_12607407_SNP [dm3] 2R_16719902_SNP [dm6]	C	T	5.659e^-4	0.993	INTRON CG30463
3R	9759816	3R_9759816_SNP [dm3] 3R_13934094_SNP [dm6]	C	G	5.661e^-4	0.993	INTERGENIC
3L	3778619	3L_3778619_SNP [dm3] 3L_3778619_SNP [dm6]	A	T	5.662e^-4	0.993	INTRON CG32264
X	8566878	X_8566878_SNP [dm3] X_8672845_SNP [dm6]	T	C	5.668e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	12450886	2R_12450886_INS [dm3] 2R_16563381_INS [dm6]	C	CGCACAATCCC...	5.673e^-4	0.993	INTRON DAT
3R	14992211	3R_14992211_SNP [dm3] 3R_19166489_SNP [dm6]	G	T	5.680e^-4	0.993	INTRON sqz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	12400574	2R_12400574_SNP [dm3] 2R_16513069_SNP [dm6]	C	T	5.689e^-4	0.993	INTRON Sema-2a
3L	7041812	3L_7041812_SNP [dm3] 3L_7048712_SNP [dm6]	A	T	5.696e^-4	0.993	INTRON Mp
2L	3938242	2L_3938242_DEL [dm3] 2L_3938242_DEL [dm6]	AAATATAAATAATATATAAA...	TCG	5.697e^-4	0.993	INTRON fred
X	18256000	X_18256000_SNP [dm3] X_18361967_SNP [dm6]	A	T	5.701e^-4	0.993	UTR_3_PRIME CG6106 DOWNSTREAM CG6106
X	5716480	X_5716480_SNP [dm3] X_5822447_SNP [dm6]	T	C	5.707e^-4	0.993	INTRON CG15765	TF binding site mE1_TFBS_chinmo
2L	21975260	2L_21975260_SNP [dm3] 2L_21975260_SNP [dm6]	C	T	5.723e^-4	0.993	INTERGENIC
X	20468969	X_20468969_SNP [dm3] X_20597942_SNP [dm6]	A	C	5.741e^-4	0.993	INTRON RunxA
3L	15371297	3L_15371297_SNP [dm3] 3L_15378197_SNP [dm6]	T	C	5.760e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16647347	2R_16647347_SNP [dm3] 2R_20759842_SNP [dm6]	G	C	5.765e^-4	0.993	INTERGENIC
3R	9013342	3R_9013342_SNP [dm3] 3R_13187620_SNP [dm6]	G	C	5.767e^-4	0.993	UPSTREAM CG14380 INTERGENIC	TF binding site mE1_TFBS_cad
3L	18617504	3L_18617504_SNP [dm3] 3L_18624404_SNP [dm6]	G	T	5.774e^-4	0.993	SYNONYMOUS_CODING bora
3L	3691389	3L_3691389_SNP [dm3] 3L_3691389_SNP [dm6]	C	A	5.783e^-4	0.993	INTERGENIC
2L	15347118	2L_15347118_SNP [dm3] 2L_15347118_SNP [dm6]	C	A	5.784e^-4	0.993	INTERGENIC
3L	18328349	3L_18328349_SNP [dm3] 3L_18335249_SNP [dm6]	C	T	5.786e^-4	0.993	INTERGENIC
3R	14731337	3R_14731337_SNP [dm3] 3R_18905615_SNP [dm6]	A	T	5.789e^-4	0.993	UTR_5_PRIME CG14292 UPSTREAM EndoA	TF binding site BDTNP1_TFBS_dl
3R	6077525	3R_6077525_SNP [dm3] 3R_10251803_SNP [dm6]	G	A	5.792e^-4	0.993	DOWNSTREAM CG42795 INTRON CG3999
2L	13092379	2L_13092379_SNP [dm3] 2L_13092379_SNP [dm6]	C	T	5.796e^-4	0.993	INTERGENIC
3R	18866921	3R_18866921_SNP [dm3] 3R_23041199_SNP [dm6]	G	A	5.808e^-4	0.993	EXON CR44226	TF binding site BDTNP1_TFBS_twi
2L	5907235	2L_5907235_SNP [dm3] 2L_5907235_SNP [dm6]	C	T	5.830e^-4	0.993	UTR_5_PRIME bchs UPSTREAM CR43808	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	14083936	3L_14083936_SNP [dm3] 3L_14090836_SNP [dm6]	A	T	5.832e^-4	0.993	INTERGENIC
2L	3561333	2L_3561333_SNP [dm3] 2L_3561333_SNP [dm6]	G	A	5.832e^-4	0.993	UPSTREAM CR44309 INTERGENIC
3R	10507014	3R_10507014_SNP [dm3] 3R_14681292_SNP [dm6]	A	G	5.852e^-4	0.993	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26088349	3R_26088349_SNP [dm3] 3R_30262627_SNP [dm6]	A	T	5.858e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_Kr
X	3109906	X_3109906_SNP [dm3] X_3215873_SNP [dm6]	C	A	5.858e^-4	0.993	INTRON dnc
2R	6286363	2R_6286363_SNP [dm3] 2R_10398858_SNP [dm6]	C	A	5.858e^-4	0.993	INTRON CG42732
2R	16756291	2R_16756291_SNP [dm3] 2R_20868786_SNP [dm6]	G	T	5.858e^-4	0.993	UTR_3_PRIME IM4 DOWNSTREAM IM4
3L	5423182	3L_5423182_SNP [dm3] 3L_5430082_SNP [dm6]	A	G	5.880e^-4	0.993	INTRON CG34391
3R	14631012	3R_14631012_SNP [dm3] 3R_18805290_SNP [dm6]	G	C	5.889e^-4	0.993	UTR_3_PRIME CG18208
2L	3793871	2L_3793871_SNP [dm3] 2L_3793871_SNP [dm6]	G	A	5.899e^-4	0.993	SYNONYMOUS_CODING CG3921	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14076464	3L_14076464_SNP [dm3] 3L_14083364_SNP [dm6]	T	A	5.905e^-4	0.993	UPSTREAM CG8100 DOWNSTREAM btl INTERGENIC
2L	4924679	2L_4924679_SNP [dm3] 2L_4924679_SNP [dm6]	C	T	5.908e^-4	0.993	INTRON hoe1
3R	3259668	3R_3259668_SNP [dm3] 3R_7433946_SNP [dm6]	C	G	5.909e^-4	0.993	INTERGENIC
3R	12790362	3R_12790362_DEL [dm3] 3R_16964640_DEL [dm6]	TACGAGCCAATAATT...	T	5.914e^-4	0.993	UPSTREAM Abd-B INTRON Abd-B
3R	14792491	3R_14792491_SNP [dm3] 3R_18966769_SNP [dm6]	T	A	5.922e^-4	0.993	INTRON CG42613 & 1 other

By genomic position
Variant impact
Gene name

Nuclear_Consensu_Dif phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results