DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.662e^-8)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2188 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	10185840	X_10185840_SNP [dm3] X_10291807_SNP [dm6]	G	T	2.537e^-6	0.822	INTRON alpha-Man-I
X	19158603	X_19158603_DEL [dm3] X_19264570_DEL [dm6]	TCCTATCTCTGTCT...	T	3.120e^-6	0.822	INTRON Vav	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	20919891	3R_20919891_SNP [dm3] 3R_25094169_SNP [dm6]	C	A	3.654e^-6	0.822	UPSTREAM fd96Cb INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	1773058	3L_1773058_SNP [dm3] 3L_1773058_SNP [dm6]	C	T	4.762e^-6	0.822	SYNONYMOUS_CODING CG13933 UPSTREAM CR44351	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17348703	2R_17348703_SNP [dm3] 2R_21461198_SNP [dm6]	T	G	4.966e^-6	0.822	INTRON Sdc	TF binding site BDTNP1_TFBS_twi
3R	19565253	3R_19565253_SNP [dm3] 3R_23739531_SNP [dm6]	C	T	5.234e^-6	0.822	INTRON Hmgcr
3R	14550388	3R_14550388_SNP [dm3] 3R_18724666_SNP [dm6]	T	A	5.425e^-6	0.822	DOWNSTREAM CG7714 INTRON Cha
2R	8488811	2R_8488811_SNP [dm3] 2R_12601306_SNP [dm6]	G	A	6.653e^-6	0.822	INTRON Amph
2L	11843485	2L_11843485_SNP [dm3] 2L_11843485_SNP [dm6]	C	A	7.015e^-6	0.822	START_GAINED CG42486 UTR_5_PRIME CG42486 UTR_3_PRIME CG14933 UPSTREAM CG42486 INTRON Pde1c
3R	20919897	3R_20919897_SNP [dm3] 3R_25094175_SNP [dm6]	T	G	8.089e^-6	0.822	UPSTREAM fd96Cb INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	6245013	2L_6245013_SNP [dm3] 2L_6245013_SNP [dm6]	C	A	8.323e^-6	0.822	INTERGENIC
X	19158571	X_19158571_SNP [dm3] X_19264538_SNP [dm6]	T	A	9.348e^-6	0.822	INTRON Vav	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	26009899	3R_26009899_SNP [dm3] 3R_30184177_SNP [dm6]	C	T	1.010e^-5	0.822	EXON CR44262
2L	930406	2L_930406_SNP [dm3] 2L_930406_SNP [dm6]	T	C	1.148e^-5	0.822	SYNONYMOUS_CODING CG4341 INTRON CG4341
2L	11843480	2L_11843480_SNP [dm3] 2L_11843480_SNP [dm6]	C	A	1.196e^-5	0.822	UTR_5_PRIME CG42486 UTR_3_PRIME CG14933 UPSTREAM CG42486 INTRON Pde1c
2R	16731526	2R_16731526_SNP [dm3] 2R_20844021_SNP [dm6]	T	A	1.481e^-5	0.822	INTERGENIC
X	10185991	X_10185991_SNP [dm3] X_10291958_SNP [dm6]	T	G	1.585e^-5	0.822	INTRON alpha-Man-I
3L	7852125	3L_7852125_SNP [dm3] 3L_7859025_SNP [dm6]	T	C	1.587e^-5	0.822	INTRON Pdp1
2L	4514683	2L_4514683_SNP [dm3] 2L_4514683_SNP [dm6]	G	T	1.594e^-5	0.822	INTRON dp
3R	8598181	3R_8598181_SNP [dm3] 3R_12772459_SNP [dm6]	A	T	1.639e^-5	0.822	INTRON beat-Vc
3L	477095	3L_477095_SNP [dm3] 3L_477095_SNP [dm6]	A	T	1.677e^-5	0.822	INTRON klar
2R	4494841	2R_4494841_SNP [dm3] 2R_8607336_SNP [dm6]	A	T	1.785e^-5	0.822	INTRON rgr	TF binding site BDTNP1_TFBS_twi
2R	9123351	2R_9123351_SNP [dm3] 2R_13235846_SNP [dm6]	T	G	1.916e^-5	0.822	UPSTREAM CG4676 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	440468	2R_440468_INS [dm3] 2R_4552963_INS [dm6]	G	GG	1.920e^-5	0.822	INTRON Stlk	transposable element FlyBase
X	10186020	X_10186020_SNP [dm3] X_10291987_SNP [dm6]	A	T	1.926e^-5	0.822	INTRON alpha-Man-I
3L	4526321	3L_4526321_SNP [dm3] 3L_4526321_SNP [dm6]	T	G	1.974e^-5	0.822	INTRON Tie
X	7500735	X_7500735_SNP [dm3] X_7606702_SNP [dm6]	C	A	2.026e^-5	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	14678909	3R_14678909_DEL [dm3] 3R_18853187_DEL [dm6]	CC	C	2.027e^-5	0.822	INTERGENIC
X	5680455	X_5680455_SNP [dm3] X_5786422_SNP [dm6]	C	T	2.046e^-5	0.822	INTRON CG42699
X	10185982	X_10185982_SNP [dm3] X_10291949_SNP [dm6]	T	C	2.071e^-5	0.822	INTRON alpha-Man-I
3L	2419928	3L_2419928_SNP [dm3] 3L_2419928_SNP [dm6]	C	G	2.078e^-5	0.822	INTRON CG45186
2L	5403099	2L_5403099_SNP [dm3] 2L_5403099_SNP [dm6]	A	T	2.104e^-5	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	5403108	2L_5403108_SNP [dm3] 2L_5403108_SNP [dm6]	C	A	2.104e^-5	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	18463818	2L_18463818_SNP [dm3] 2L_18463818_SNP [dm6]	T	G	2.159e^-5	0.822	INTRON let-7-C
2L	128046	2L_128046_SNP [dm3] 2L_128046_SNP [dm6]	G	A	2.226e^-5	0.822	INTRON CG11455 & 1 other	TF binding site mE1_TFBS_Trl
3R	21368782	3R_21368782_SNP [dm3] 3R_25543060_SNP [dm6]	C	T	2.236e^-5	0.822	INTRON msi
3L	7852205	3L_7852205_SNP [dm3] 3L_7859105_SNP [dm6]	T	A	2.249e^-5	0.822	INTRON Pdp1
3L	16731038	3L_16731038_SNP [dm3] 3L_16737938_SNP [dm6]	T	C	2.295e^-5	0.822	SYNONYMOUS_CODING CG9701	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17348707	2R_17348707_SNP [dm3] 2R_21461202_SNP [dm6]	C	T	2.296e^-5	0.822	INTRON Sdc	TF binding site BDTNP1_TFBS_twi
2R	17866509	2R_17866509_SNP [dm3] 2R_21979004_SNP [dm6]	C	T	2.375e^-5	0.822	SYNONYMOUS_CODING Gr58b UPSTREAM Gr58a	TF binding site mE1_TFBS_cad
3L	477181	3L_477181_SNP [dm3] 3L_477181_SNP [dm6]	T	C	2.392e^-5	0.822	INTRON klar
X	10186005	X_10186005_SNP [dm3] X_10291972_SNP [dm6]	C	G	2.475e^-5	0.822	INTRON alpha-Man-I
2R	17866493	2R_17866493_SNP [dm3] 2R_21978988_SNP [dm6]	G	A	2.492e^-5	0.822	SYNONYMOUS_CODING Gr58b UPSTREAM Gr58a	TF binding site mE1_TFBS_cad
3R	20919249	3R_20919249_SNP [dm3] 3R_25093527_SNP [dm6]	G	A	2.616e^-5	0.822	INTERGENIC
3L	681805	3L_681805_SNP [dm3] 3L_681805_SNP [dm6]	G	A	2.620e^-5	0.822	INTRON CG3386	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4818388	2L_4818388_SNP [dm3] 2L_4818388_SNP [dm6]	C	A	2.797e^-5	0.822	UPSTREAM mir-4910 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	7500744	X_7500744_SNP [dm3] X_7606711_SNP [dm6]	T	G	2.850e^-5	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	26058153	3R_26058153_SNP [dm3] 3R_30232431_SNP [dm6]	C	A	2.855e^-5	0.822	INTERGENIC
3L	6542226	3L_6542226_SNP [dm3] 3L_6549126_SNP [dm6]	A	T	2.896e^-5	0.822	UTR_3_PRIME sfl
2R	4493405	2R_4493405_SNP [dm3] 2R_8605900_SNP [dm6]	A	T	2.900e^-5	0.822	INTRON rgr	TF binding site mE1_TFBS_cad
3L	483650	3L_483650_SNP [dm3] 3L_483650_SNP [dm6]	G	T	3.050e^-5	0.822	INTRON klar
2L	4546212	2L_4546212_SNP [dm3] 2L_4546212_SNP [dm6]	G	C	3.054e^-5	0.822	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19041122	3R_19041122_SNP [dm3] 3R_23215400_SNP [dm6]	G	A	3.068e^-5	0.822	UPSTREAM cnc INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18943066	2R_18943066_SNP [dm3] 2R_23055543_SNP [dm6]	T	C	3.084e^-5	0.822	UTR_5_PRIME CG44252	TF binding site BDTNP1_TFBS_twi
3L	6068385	3L_6068385_SNP [dm3] 3L_6075285_SNP [dm6]	G	C	3.088e^-5	0.822	UPSTREAM CG6610 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
2L	10422256	2L_10422256_SNP [dm3] 2L_10422256_SNP [dm6]	G	A	3.104e^-5	0.822	SYNONYMOUS_CODING pie	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	19041115	3R_19041115_SNP [dm3] 3R_23215393_SNP [dm6]	G	T	3.133e^-5	0.822	UPSTREAM cnc INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4503437	2L_4503437_SNP [dm3] 2L_4503437_SNP [dm6]	G	A	3.143e^-5	0.822	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7852135	3L_7852135_SNP [dm3] 3L_7859035_SNP [dm6]	G	C	3.217e^-5	0.822	INTRON Pdp1
2L	4534022	2L_4534022_SNP [dm3] 2L_4534022_SNP [dm6]	C	A	3.368e^-5	0.822	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_sens
3L	494797	3L_494797_INS [dm3] 3L_494797_INS [dm6]	A	AA	3.394e^-5	0.822	INTRON klar
3R	13781149	3R_13781149_SNP [dm3] 3R_17955427_SNP [dm6]	A	C	3.405e^-5	0.822	INTRON cpo
3R	26923909	3R_26923909_SNP [dm3] 3R_31098187_SNP [dm6]	G	A	3.425e^-5	0.822	UPSTREAM CG11317 DOWNSTREAM CG15553 INTERGENIC
X	14379696	X_14379696_SNP [dm3] X_14485663_SNP [dm6]	C	T	3.466e^-5	0.822	INTERGENIC
X	7500733	X_7500733_SNP [dm3] X_7606700_SNP [dm6]	G	T	3.499e^-5	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	18269237	2L_18269237_SNP [dm3] 2L_18269237_SNP [dm6]	C	T	3.535e^-5	0.822	INTRON CG42750
2L	4507910	2L_4507910_SNP [dm3] 2L_4507910_SNP [dm6]	A	G	3.648e^-5	0.822	INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	14742959	X_14742959_SNP [dm3] X_14848926_SNP [dm6]	G	C	3.699e^-5	0.822	UPSTREAM CG9522 INTRON Flo2
X	8274947	X_8274947_SNP [dm3] X_8380914_SNP [dm6]	T	C	3.753e^-5	0.822	INTERGENIC
X	9462017	X_9462017_SNP [dm3] X_9567984_SNP [dm6]	A	T	3.849e^-5	0.822	SYNONYMOUS_CODING Cubn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9280176	2L_9280176_SNP [dm3] 2L_9280176_SNP [dm6]	T	G	4.003e^-5	0.822	INTRON Ggamma30A
2R	6638139	2R_6638139_SNP [dm3] 2R_10750634_SNP [dm6]	C	T	4.032e^-5	0.822	INTRON CG33144
X	20878385	X_20878385_SNP [dm3] X_21007358_SNP [dm6]	A	C	4.039e^-5	0.822	INTERGENIC
2L	9279998	2L_9279998_SNP [dm3] 2L_9279998_SNP [dm6]	G	T	4.054e^-5	0.822	INTRON Ggamma30A
3L	2582606	3L_2582606_SNP [dm3] 3L_2582606_SNP [dm6]	A	G	4.111e^-5	0.822	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10622994	2L_10622994_SNP [dm3] 2L_10622994_SNP [dm6]	T	C	4.181e^-5	0.822	INTRON Trim9
2R	7286655	2R_7286655_SNP [dm3] 2R_11399150_SNP [dm6]	T	C	4.229e^-5	0.822	DOWNSTREAM tRNA:CR30506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	459174	2R_459174_INS [dm3] 2R_4571669_INS [dm6]	A	ATTAAA	4.374e^-5	0.822	INTERGENIC	TF binding site mE1_TFBS_inv
3L	5238270	3L_5238270_SNP [dm3] 3L_5245170_SNP [dm6]	A	G	4.427e^-5	0.822	INTRON shep
2L	5403133	2L_5403133_SNP [dm3] 2L_5403133_SNP [dm6]	A	G	4.554e^-5	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	17898302	2L_17898302_SNP [dm3] 2L_17898302_SNP [dm6]	G	C	4.591e^-5	0.822	INTERGENIC
X	7500737	X_7500737_SNP [dm3] X_7606704_SNP [dm6]	T	C	4.678e^-5	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	14990262	2R_14990262_SNP [dm3] 2R_19102757_SNP [dm6]	G	C	4.735e^-5	0.822	INTRON 5-HT1A
X	10185979	X_10185979_SNP [dm3] X_10291946_SNP [dm6]	T	G	4.762e^-5	0.822	INTRON alpha-Man-I
2L	17593895	2L_17593895_SNP [dm3] 2L_17593895_SNP [dm6]	A	T	4.774e^-5	0.822	UPSTREAM Sytalpha INTRON Sytalpha
X	9557557	X_9557557_SNP [dm3] X_9663524_SNP [dm6]	A	G	4.795e^-5	0.822	UPSTREAM CG3106 INTERGENIC
2L	11184073	2L_11184073_SNP [dm3] 2L_11184073_SNP [dm6]	T	G	4.811e^-5	0.822	INTRON Ca-beta
X	7500767	X_7500767_SNP [dm3] X_7606734_SNP [dm6]	A	G	4.838e^-5	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	21122066	3R_21122066_SNP [dm3] 3R_25296344_SNP [dm6]	G	A	4.849e^-5	0.822	SYNONYMOUS_CODING CG31097 UPSTREAM CG31102
3R	9226136	3R_9226136_DEL [dm3] 3R_13400414_DEL [dm6]	TTAGTTAT	T	4.914e^-5	0.822	INTRON CG9796
X	14997932	X_14997932_SNP [dm3] X_15103899_SNP [dm6]	A	G	4.923e^-5	0.822	INTRON Rab3-GEF
2R	8133130	2R_8133130_SNP [dm3] 2R_12245625_SNP [dm6]	G	C	4.944e^-5	0.822	UPSTREAM CG43244 INTERGENIC
3L	3021380	3L_3021380_SNP [dm3] 3L_3021380_SNP [dm6]	C	T	4.986e^-5	0.822	INTERGENIC
2L	7330328	2L_7330328_SNP [dm3] 2L_7330328_SNP [dm6]	A	T	5.002e^-5	0.822	UPSTREAM CR45304 INTERGENIC
X	3959211	X_3959211_SNP [dm3] X_4065178_SNP [dm6]	G	C	5.052e^-5	0.822	INTERGENIC
2L	6153156	2L_6153156_SNP [dm3] 2L_6153156_SNP [dm6]	G	A	5.143e^-5	0.822	NON_SYNONYMOUS_CODING Muc26B DOWNSTREAM CG31639	TF binding site BDTNP1_TFBS_sna
3L	16450014	3L_16450014_SNP [dm3] 3L_16456914_SNP [dm6]	T	G	5.149e^-5	0.822	INTRON CG33158
3L	9808729	3L_9808729_SNP [dm3] 3L_9815629_SNP [dm6]	A	G	5.169e^-5	0.822	UPSTREAM CG43897 INTRON CG43897
3L	2538190	3L_2538190_DEL [dm3] 3L_2538190_DEL [dm6]	AGA	A	5.225e^-5	0.822	INTRON Spn
3R	14544537	3R_14544537_SNP [dm3] 3R_18718815_SNP [dm6]	C	T	5.231e^-5	0.822	UTR_3_PRIME VAChT INTRON Cha
3L	10487644	3L_10487644_SNP [dm3] 3L_10494544_SNP [dm6]	G	A	5.236e^-5	0.822	INTRON A2bp1
2R	18065866	2R_18065866_SNP [dm3] 2R_22178361_SNP [dm6]	A	T	5.240e^-5	0.822	NON_SYNONYMOUS_CODING CG11170 DOWNSTREAM CG6758
X	12816642	X_12816642_DEL [dm3] X_12922609_DEL [dm6]	CCCCTCCCTC	C	5.249e^-5	0.822	INTRON fne
X	10185817	X_10185817_INS [dm3] X_10291784_INS [dm6]	C	TAGATTCGTTGAA...	5.251e^-5	0.822	INTRON alpha-Man-I
X	7500732	X_7500732_SNP [dm3] X_7606699_SNP [dm6]	C	T	5.295e^-5	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	3490934	2L_3490934_SNP [dm3] 2L_3490934_SNP [dm6]	G	T	5.357e^-5	0.822	UTR_5_PRIME CG15414
X	16083080	X_16083080_SNP [dm3] X_16189047_SNP [dm6]	G	T	5.421e^-5	0.822	INTERGENIC
X	16083082	X_16083082_DEL [dm3] X_16189049_DEL [dm6]	TC	A	5.421e^-5	0.822	INTERGENIC
X	16083076	X_16083076_SNP [dm3] X_16189043_SNP [dm6]	C	T	5.424e^-5	0.822	INTERGENIC
X	16083077	X_16083077_SNP [dm3] X_16189044_SNP [dm6]	A	T	5.424e^-5	0.822	INTERGENIC
X	17233674	X_17233674_SNP [dm3] X_17339641_SNP [dm6]	T	G	5.473e^-5	0.822	INTERGENIC
X	10185901	X_10185901_SNP [dm3] X_10291868_SNP [dm6]	A	T	5.531e^-5	0.822	INTRON alpha-Man-I
3R	14676984	3R_14676984_SNP [dm3] 3R_18851262_SNP [dm6]	C	T	5.538e^-5	0.822	UPSTREAM CR45633 DOWNSTREAM CG31226 INTERGENIC
2R	17866494	2R_17866494_SNP [dm3] 2R_21978989_SNP [dm6]	A	G	5.567e^-5	0.822	SYNONYMOUS_CODING Gr58b UPSTREAM Gr58a	TF binding site mE1_TFBS_cad
X	10185921	X_10185921_SNP [dm3] X_10291888_SNP [dm6]	T	C	5.568e^-5	0.822	INTRON alpha-Man-I
2R	11737602	2R_11737602_SNP [dm3] 2R_15850097_SNP [dm6]	T	A	5.612e^-5	0.822	INTRON tun
3L	17617981	3L_17617981_SNP [dm3] 3L_17624881_SNP [dm6]	A	G	5.678e^-5	0.822	INTRON CG7510
3R	19607763	3R_19607763_INS [dm3] 3R_23782041_INS [dm6]	T	TGACGAT	5.812e^-5	0.822	UTR_5_PRIME mbc UPSTREAM Nup98-96	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	18432419	2L_18432419_SNP [dm3] 2L_18432419_SNP [dm6]	G	A	5.846e^-5	0.822	INTERGENIC
2L	5616077	2L_5616077_SNP [dm3] 2L_5616077_SNP [dm6]	T	C	5.902e^-5	0.822	DOWNSTREAM CR44795 INTRON CG14010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
X	21127085	X_21127085_SNP [dm3] X_21256058_SNP [dm6]	T	A	5.903e^-5	0.822	INTRON CG32521
X	10031172	X_10031172_SNP [dm3] X_10137139_SNP [dm6]	T	A	5.940e^-5	0.822	INTRON CR44894 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20878366	X_20878366_SNP [dm3] X_21007339_SNP [dm6]	T	A	5.948e^-5	0.822	INTERGENIC
2L	17895739	2L_17895739_SNP [dm3] 2L_17895739_SNP [dm6]	G	T	5.961e^-5	0.822	INTERGENIC
3L	4647322	3L_4647322_SNP [dm3] 3L_4647322_SNP [dm6]	G	C	6.071e^-5	0.822	UPSTREAM CG32238 INTRON axo
3L	4647316	3L_4647316_SNP [dm3] 3L_4647316_SNP [dm6]	T	A	6.078e^-5	0.822	UPSTREAM CG32238 INTRON axo
3L	15111897	3L_15111897_SNP [dm3] 3L_15118797_SNP [dm6]	C	A	6.111e^-5	0.822	SYNONYMOUS_CODING Cep135	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	6532875	2L_6532875_INS [dm3] 2L_6532875_INS [dm6]	T	TAT	6.209e^-5	0.822	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4503688	2L_4503688_SNP [dm3] 2L_4503688_SNP [dm6]	C	G	6.211e^-5	0.822	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14410483	3L_14410483_SNP [dm3] 3L_14417383_SNP [dm6]	T	G	6.267e^-5	0.822	INTRON bbg
3R	14677697	3R_14677697_SNP [dm3] 3R_18851975_SNP [dm6]	T	G	6.449e^-5	0.822	UPSTREAM CR45633 & 1 other INTERGENIC
2L	15351969	2L_15351969_SNP [dm3] 2L_15351969_SNP [dm6]	A	T	6.539e^-5	0.822	INTERGENIC
X	5350547	X_5350547_SNP [dm3] X_5456514_SNP [dm6]	T	C	6.550e^-5	0.822	INTRON SPR
3R	19133598	3R_19133598_SNP [dm3] 3R_23307876_SNP [dm6]	T	G	6.569e^-5	0.822	INTRON pnt	TF binding site mE1_TFBS_inv
2L	7568151	2L_7568151_DEL [dm3] 2L_7568151_DEL [dm6]	AC	A	6.574e^-5	0.822	INTRON RapGAP1
X	9557566	X_9557566_SNP [dm3] X_9663533_SNP [dm6]	T	C	6.711e^-5	0.822	UPSTREAM CG3106 INTERGENIC
2L	17860681	2L_17860681_SNP [dm3] 2L_17860681_SNP [dm6]	T	A	6.823e^-5	0.822	INTRON CadN2
X	7500730	X_7500730_SNP [dm3] X_7606697_SNP [dm6]	C	T	6.875e^-5	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	8925321	2R_8925321_SNP [dm3] 2R_13037816_SNP [dm6]	C	G	6.877e^-5	0.822	INTERGENIC
2L	9414222	2L_9414222_SNP [dm3] 2L_9414222_SNP [dm6]	C	A	6.926e^-5	0.822	INTRON Shawl
2L	18443858	2L_18443858_SNP [dm3] 2L_18443858_SNP [dm6]	T	G	6.943e^-5	0.822	UPSTREAM RpS26 DOWNSTREAM ncm INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	10185892	X_10185892_SNP [dm3] X_10291859_SNP [dm6]	C	T	7.082e^-5	0.822	INTRON alpha-Man-I
2L	15351926	2L_15351926_SNP [dm3] 2L_15351926_SNP [dm6]	T	A	7.173e^-5	0.822	INTERGENIC
3R	22768653	3R_22768653_SNP [dm3] 3R_26942931_SNP [dm6]	A	G	7.202e^-5	0.822	SYNONYMOUS_CODING sda	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	1173343	3L_1173343_SNP [dm3] 3L_1173343_SNP [dm6]	T	C	7.206e^-5	0.822	SYNONYMOUS_CODING bab2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	11205139	X_11205139_SNP [dm3] X_11311106_SNP [dm6]	G	T	7.305e^-5	0.822	NON_SYNONYMOUS_CODING Ir10a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19156906	X_19156906_SNP [dm3] X_19262873_SNP [dm6]	T	A	7.351e^-5	0.822	INTRON Vav	TF binding site BDTNP1_TFBS_dl
3L	1424581	3L_1424581_SNP [dm3] 3L_1424581_SNP [dm6]	A	C	7.418e^-5	0.822	INTRON Ptp61F
3R	14676991	3R_14676991_DEL [dm3] 3R_18851269_DEL [dm6]	CG	T	7.501e^-5	0.822	UPSTREAM CR45633 DOWNSTREAM CG31226 INTERGENIC
2R	8133171	2R_8133171_SNP [dm3] 2R_12245666_SNP [dm6]	C	T	7.587e^-5	0.822	UPSTREAM CG43244 INTERGENIC
X	11178183	X_11178183_SNP [dm3] X_11284150_SNP [dm6]	C	A	7.683e^-5	0.822	INTRON CG44422
X	18875954	X_18875954_SNP [dm3] X_18981921_SNP [dm6]	T	A	7.693e^-5	0.822	INTRON CG43759
2R	12275645	2R_12275645_SNP [dm3] 2R_16388140_SNP [dm6]	C	T	7.765e^-5	0.822	INTRON Sema-2b
2L	15352006	2L_15352006_DEL [dm3] 2L_15352006_DEL [dm6]	GAAGAATTTTGATTTAAGAG...	G	7.846e^-5	0.822	INTERGENIC
3R	25519993	3R_25519993_INS [dm3] 3R_29694271_INS [dm6]	G	GG	7.863e^-5	0.822	INTRON dmrt99B
X	14223693	X_14223693_SNP [dm3] X_14329660_SNP [dm6]	A	G	7.868e^-5	0.822	INTRON dpr8
3L	1551401	3L_1551401_SNP [dm3] 3L_1551401_SNP [dm6]	C	T	7.892e^-5	0.822	INTRON Cct1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26878386	3R_26878386_SNP [dm3] 3R_31052664_SNP [dm6]	T	A	7.918e^-5	0.822	UTR_3_PRIME l_3_03670 DOWNSTREAM Aph-4	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	8156809	X_8156809_SNP [dm3] X_8262776_SNP [dm6]	C	T	7.967e^-5	0.822	INTRON CG1632	TF binding site BDTNP1_TFBS_da
2L	18303285	2L_18303285_SNP [dm3] 2L_18303285_SNP [dm6]	C	T	7.973e^-5	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA
3L	4045930	3L_4045930_SNP [dm3] 3L_4045930_SNP [dm6]	G	A	8.000e^-5	0.822	UPSTREAM CG1136 INTERGENIC
2L	15141838	2L_15141838_SNP [dm3] 2L_15141838_SNP [dm6]	G	C	8.008e^-5	0.822	INTERGENIC
2L	18269235	2L_18269235_SNP [dm3] 2L_18269235_SNP [dm6]	T	C	8.084e^-5	0.822	INTRON CG42750
2L	11843490	2L_11843490_SNP [dm3] 2L_11843490_SNP [dm6]	G	A	8.207e^-5	0.822	UTR_5_PRIME CG42486 UTR_3_PRIME CG14933 UPSTREAM CG42486 INTRON Pde1c
3R	19040287	3R_19040287_SNP [dm3] 3R_23214565_SNP [dm6]	C	A	8.280e^-5	0.822	UPSTREAM cnc INTRON cnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_Trl
2R	473181	2R_473181_SNP [dm3] 2R_4585676_SNP [dm6]	A	C	8.293e^-5	0.822	INTERGENIC
2L	4657401	2L_4657401_SNP [dm3] 2L_4657401_SNP [dm6]	A	G	8.341e^-5	0.822	INTERGENIC
2R	473173	2R_473173_SNP [dm3] 2R_4585668_SNP [dm6]	A	T	8.357e^-5	0.822	INTERGENIC
2L	3929737	2L_3929737_SNP [dm3] 2L_3929737_SNP [dm6]	A	G	8.470e^-5	0.822	INTRON fred
3L	1551446	3L_1551446_INS [dm3] 3L_1551446_INS [dm6]	G	GTAG	8.475e^-5	0.822	INTRON Cct1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9137091	2R_9137091_SNP [dm3] 2R_13249586_SNP [dm6]	G	C	8.513e^-5	0.822	DOWNSTREAM Mp20 INTRON CG4712
3L	489701	3L_489701_SNP [dm3] 3L_489701_SNP [dm6]	G	A	8.608e^-5	0.822	INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	19163121	2R_19163121_SNP [dm3] 2R_23275598_SNP [dm6]	G	A	8.608e^-5	0.822	UPSTREAM ord INTERGENIC
2R	19163124	2R_19163124_SNP [dm3] 2R_23275601_SNP [dm6]	T	C	8.608e^-5	0.822	UPSTREAM ord INTERGENIC
2R	19163139	2R_19163139_DEL [dm3] 2R_23275616_DEL [dm6]	GGGCATG	G	8.608e^-5	0.822	UPSTREAM ord INTERGENIC
X	10185929	X_10185929_INS [dm3] X_10291896_INS [dm6]	A	ATTTGGACAATTATTACTTA...	8.623e^-5	0.822	INTRON alpha-Man-I
3R	21238317	3R_21238317_SNP [dm3] 3R_25412595_SNP [dm6]	A	T	8.668e^-5	0.822	INTRON Fur1
X	5803592	X_5803592_SNP [dm3] X_5909559_SNP [dm6]	C	T	8.698e^-5	0.822	INTRON CG12236
X	16083085	X_16083085_SNP [dm3] X_16189052_SNP [dm6]	T	G	8.706e^-5	0.822	INTERGENIC
2R	17408050	2R_17408050_SNP [dm3] 2R_21520545_SNP [dm6]	A	G	8.751e^-5	0.822	UTR_3_PRIME CG30289 UPSTREAM CG30288
3L	8902519	3L_8902519_SNP [dm3] 3L_8909419_SNP [dm6]	T	C	9.050e^-5	0.822	SYNONYMOUS_CODING mfr UTR_5_PRIME mfr
X	9557551	X_9557551_SNP [dm3] X_9663518_SNP [dm6]	G	T	9.063e^-5	0.822	UPSTREAM CG3106 INTERGENIC
3R	19133627	3R_19133627_SNP [dm3] 3R_23307905_SNP [dm6]	T	A	9.137e^-5	0.822	INTRON pnt	TF binding site mE1_TFBS_inv
3R	20919936	3R_20919936_SNP [dm3] 3R_25094214_SNP [dm6]	T	C	9.163e^-5	0.822	UPSTREAM fd96Cb INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	4313712	3L_4313712_SNP [dm3] 3L_4313712_SNP [dm6]	C	T	9.289e^-5	0.822	SYNONYMOUS_CODING Claspin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	4501756	2L_4501756_SNP [dm3] 2L_4501756_SNP [dm6]	T	A	9.415e^-5	0.822	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	4526460	3L_4526460_SNP [dm3] 3L_4526460_SNP [dm6]	T	C	9.459e^-5	0.822	INTRON Tie
3L	17481746	3L_17481746_SNP [dm3] 3L_17488646_SNP [dm6]	A	T	9.519e^-5	0.822	INTRON Oatp74D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	16083058	X_16083058_SNP [dm3] X_16189025_SNP [dm6]	A	C	9.587e^-5	0.822	INTERGENIC
2L	18272803	2L_18272803_SNP [dm3] 2L_18272803_SNP [dm6]	T	C	9.588e^-5	0.822	INTRON CG42750
2L	11692865	2L_11692865_SNP [dm3] 2L_11692865_SNP [dm6]	C	A	9.594e^-5	0.822	INTERGENIC	TF binding site mE1_TFBS_inv
X	10296719	X_10296719_SNP [dm3] X_10402686_SNP [dm6]	A	G	9.599e^-5	0.822	INTRON flw
X	14219696	X_14219696_SNP [dm3] X_14325663_SNP [dm6]	A	G	9.615e^-5	0.822	INTRON dpr8
2R	8902050	2R_8902050_INS [dm3] 2R_13014545_INS [dm6]	T	TT	9.676e^-5	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	9557552	X_9557552_SNP [dm3] X_9663519_SNP [dm6]	A	C	9.709e^-5	0.822	UPSTREAM CG3106 INTERGENIC
2R	8345647	2R_8345647_SNP [dm3] 2R_12458142_SNP [dm6]	G	T	9.714e^-5	0.822	INTRON Lac	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4546245	2L_4546245_SNP [dm3] 2L_4546245_SNP [dm6]	T	A	9.718e^-5	0.822	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7363621	2L_7363621_SNP [dm3] 2L_7363621_SNP [dm6]	C	A	9.719e^-5	0.822	UTR_5_PRIME Wnt10
2R	9152787	2R_9152787_SNP [dm3] 2R_13265282_SNP [dm6]	G	C	9.874e^-5	0.822	DOWNSTREAM CG42319 INTRON CG42319
2R	473170	2R_473170_SNP [dm3] 2R_4585665_SNP [dm6]	A	G	9.937e^-5	0.822	INTERGENIC
2L	9415587	2L_9415587_SNP [dm3] 2L_9415587_SNP [dm6]	T	A	9.959e^-5	0.822	UPSTREAM Shawl INTERGENIC
2R	8516159	2R_8516159_SNP [dm3] 2R_12628654_SNP [dm6]	T	C	1.008e^-4	0.822	DOWNSTREAM muskelin & 1 other INTERGENIC
2R	18714658	2R_18714658_SNP [dm3] 2R_22827135_SNP [dm6]	A	T	1.009e^-4	0.822	INTRON CG42284 & 1 other
3L	4141441	3L_4141441_SNP [dm3] 3L_4141441_SNP [dm6]	T	G	1.013e^-4	0.822	UPSTREAM Akh & 1 other DOWNSTREAM Ras64B INTERGENIC
2L	17860683	2L_17860683_SNP [dm3] 2L_17860683_SNP [dm6]	G	A	1.017e^-4	0.822	INTRON CadN2
X	5803583	X_5803583_SNP [dm3] X_5909550_SNP [dm6]	T	C	1.029e^-4	0.822	INTRON CG12236
X	7333102	X_7333102_INS [dm3] X_7439069_INS [dm6]	T	TGGCTACCAT	1.040e^-4	0.822	INTERGENIC
X	4204303	X_4204303_SNP [dm3] X_4310270_SNP [dm6]	T	C	1.047e^-4	0.822	INTERGENIC
3L	7510766	3L_7510766_SNP [dm3] 3L_7517666_SNP [dm6]	C	A	1.052e^-4	0.822	DOWNSTREAM CG7546 INTERGENIC
3L	483016	3L_483016_DEL [dm3] 3L_483016_DEL [dm6]	GAAGTGATATTAGCAAGG...	G	1.054e^-4	0.822	INTRON klar
2R	473179	2R_473179_INS [dm3] 2R_4585674_INS [dm6]	G	GTGG	1.060e^-4	0.822	INTERGENIC
2L	4503737	2L_4503737_SNP [dm3] 2L_4503737_SNP [dm6]	C	T	1.072e^-4	0.822	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19135089	2R_19135089_SNP [dm3] 2R_23247566_SNP [dm6]	G	A	1.092e^-4	0.822	NON_SYNONYMOUS_CODING RpL22-like	TF binding site mE1_TFBS_chinmo
2L	4503261	2L_4503261_SNP [dm3] 2L_4503261_SNP [dm6]	G	C	1.100e^-4	0.822	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4530745	2L_4530745_SNP [dm3] 2L_4530745_SNP [dm6]	A	T	1.103e^-4	0.822	INTRON dp
2R	465450	2R_465450_SNP [dm3] 2R_4577945_SNP [dm6]	T	G	1.111e^-4	0.822	INTERGENIC
2R	18367000	2R_18367000_SNP [dm3] 2R_22479495_SNP [dm6]	A	G	1.115e^-4	0.822	INTRON CG4752
2L	8139577	2L_8139577_SNP [dm3] 2L_8139577_SNP [dm6]	C	A	1.121e^-4	0.822	SYNONYMOUS_CODING CG8552 UTR_5_PRIME CG8552	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	21368820	3R_21368820_SNP [dm3] 3R_25543098_SNP [dm6]	A	G	1.124e^-4	0.822	INTRON msi
3L	491706	3L_491706_SNP [dm3] 3L_491706_SNP [dm6]	A	G	1.132e^-4	0.822	UPSTREAM klar INTRON klar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	9785236	2R_9785236_SNP [dm3] 2R_13897731_SNP [dm6]	A	T	1.133e^-4	0.822	UPSTREAM shot INTRON shot	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	26676879	3R_26676879_SNP [dm3] 3R_30851157_SNP [dm6]	G	A	1.147e^-4	0.822	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11177539	3L_11177539_SNP [dm3] 3L_11184439_SNP [dm6]	T	A	1.152e^-4	0.822	INTRON GlcAT-P
2R	18588727	2R_18588727_SNP [dm3] 2R_22701222_SNP [dm6]	T	C	1.162e^-4	0.822	UPSTREAM robo DOWNSTREAM CG30259 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	19919808	3L_19919808_SNP [dm3] 3L_19926708_SNP [dm6]	G	A	1.168e^-4	0.822	SYNONYMOUS_CODING Grasp65 DOWNSTREAM CG8004	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16147921	X_16147921_SNP [dm3] X_16253888_SNP [dm6]	A	C	1.172e^-4	0.822	UPSTREAM snRNA:U2:14B DOWNSTREAM snRNA:U5:14B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	12325699	2L_12325699_SNP [dm3] 2L_12325699_SNP [dm6]	C	G	1.172e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	4336150	2L_4336150_SNP [dm3] 2L_4336150_SNP [dm6]	T	G	1.175e^-4	0.822	INTRON Atet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17898294	2L_17898294_SNP [dm3] 2L_17898294_SNP [dm6]	T	C	1.185e^-4	0.822	INTERGENIC
2R	473164	2R_473164_SNP [dm3] 2R_4585659_SNP [dm6]	A	C	1.185e^-4	0.822	INTERGENIC
2L	12325715	2L_12325715_SNP [dm3] 2L_12325715_SNP [dm6]	T	C	1.189e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	3289480	3L_3289480_SNP [dm3] 3L_3289480_SNP [dm6]	G	A	1.190e^-4	0.822	INTRON CG12017
2R	4639374	2R_4639374_SNP [dm3] 2R_8751869_SNP [dm6]	C	T	1.194e^-4	0.822	INTRON CG8740	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_cnc
X	13977559	X_13977559_SNP [dm3] X_14083526_SNP [dm6]	T	A	1.196e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	4881821	3L_4881821_SNP [dm3] 3L_4881821_SNP [dm6]	G	C	1.202e^-4	0.822	INTRON CG17150
2R	15431590	2R_15431590_SNP [dm3] 2R_19544085_SNP [dm6]	A	G	1.207e^-4	0.822	INTRON sm
2R	15814647	2R_15814647_SNP [dm3] 2R_19927142_SNP [dm6]	A	C	1.211e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	9344978	3L_9344978_SNP [dm3] 3L_9351878_SNP [dm6]	T	A	1.214e^-4	0.822	DOWNSTREAM PGRP-LF INTRON UGP
3L	5077990	3L_5077990_DEL [dm3] 3L_5077990_DEL [dm6]	TGACATACAGGTACTACAAA...	T	1.215e^-4	0.822	INTRON Con
3L	13366732	3L_13366732_SNP [dm3] 3L_13373632_SNP [dm6]	C	G	1.222e^-4	0.822	INTERGENIC
2R	17204081	2R_17204081_SNP [dm3] 2R_21316576_SNP [dm6]	G	A	1.229e^-4	0.822	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	491744	3L_491744_SNP [dm3] 3L_491744_SNP [dm6]	T	A	1.237e^-4	0.822	UPSTREAM klar INTRON klar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12325156	2L_12325156_INS [dm3] 2L_12325156_INS [dm6]	T	TTTATTATATTTTTTTT...	1.237e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12325168	2L_12325168_DEL [dm3] 2L_12325168_DEL [dm6]	TA	T	1.237e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3518512	3L_3518512_SNP [dm3] 3L_3518512_SNP [dm6]	A	T	1.240e^-4	0.822	INTRON Eip63E
3R	26677426	3R_26677426_SNP [dm3] 3R_30851704_SNP [dm6]	C	A	1.246e^-4	0.822	UPSTREAM tll INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	1774531	3L_1774531_SNP [dm3] 3L_1774531_SNP [dm6]	C	T	1.248e^-4	0.822	SYNONYMOUS_CODING CG13933 EXON CR44351	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	7333198	X_7333198_SNP [dm3] X_7439165_SNP [dm6]	T	A	1.248e^-4	0.822	INTERGENIC
X	17253236	X_17253236_SNP [dm3] X_17359203_SNP [dm6]	T	G	1.250e^-4	0.822	INTERGENIC
X	4778233	X_4778233_SNP [dm3] X_4884200_SNP [dm6]	C	T	1.258e^-4	0.822	INTRON CG42594
2R	18065865	2R_18065865_SNP [dm3] 2R_22178360_SNP [dm6]	C	G	1.259e^-4	0.822	NON_SYNONYMOUS_CODING CG11170 DOWNSTREAM CG6758
3R	22270844	3R_22270844_SNP [dm3] 3R_26445122_SNP [dm6]	A	G	1.262e^-4	0.822	INTRON tx
3L	1320779	3L_1320779_SNP [dm3] 3L_1320779_SNP [dm6]	T	A	1.263e^-4	0.822	UPSTREAM Myo61F INTRON Myo61F
2R	465357	2R_465357_SNP [dm3] 2R_4577852_SNP [dm6]	C	A	1.271e^-4	0.822	INTERGENIC
3R	8623345	3R_8623345_SNP [dm3] 3R_12797623_SNP [dm6]	C	A	1.273e^-4	0.822	INTERGENIC
2L	4502644	2L_4502644_SNP [dm3] 2L_4502644_SNP [dm6]	G	A	1.274e^-4	0.822	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1782296	3L_1782296_SNP [dm3] 3L_1782296_SNP [dm6]	G	A	1.280e^-4	0.822	SYNONYMOUS_CODING alpha-Spec	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2R	17204093	2R_17204093_SNP [dm3] 2R_21316588_SNP [dm6]	A	C	1.282e^-4	0.822	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	18541647	3R_18541647_SNP [dm3] 3R_22715925_SNP [dm6]	C	T	1.282e^-4	0.822	SYNONYMOUS_CODING wge	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	487170	3L_487170_SNP [dm3] 3L_487170_SNP [dm6]	G	A	1.283e^-4	0.822	INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	19563714	3R_19563714_SNP [dm3] 3R_23737992_SNP [dm6]	C	T	1.284e^-4	0.822	INTRON Hmgcr
X	10186022	X_10186022_SNP [dm3] X_10291989_SNP [dm6]	T	A	1.286e^-4	0.822	INTRON alpha-Man-I
3L	5302045	3L_5302045_SNP [dm3] 3L_5308945_SNP [dm6]	C	T	1.295e^-4	0.822	INTERGENIC
X	11085729	X_11085729_SNP [dm3] X_11191696_SNP [dm6]	C	T	1.308e^-4	0.822	INTERGENIC
2R	16358210	2R_16358210_SNP [dm3] 2R_20470705_SNP [dm6]	T	A	1.317e^-4	0.822	UTR_3_PRIME CG12484 INTRON CG12484
3L	15749269	3L_15749269_SNP [dm3] 3L_15756169_SNP [dm6]	A	G	1.326e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	10185294	X_10185294_SNP [dm3] X_10291261_SNP [dm6]	A	G	1.328e^-4	0.822	INTRON alpha-Man-I
3R	19563656	3R_19563656_SNP [dm3] 3R_23737934_SNP [dm6]	A	T	1.331e^-4	0.822	INTRON Hmgcr
2L	4502833	2L_4502833_SNP [dm3] 2L_4502833_SNP [dm6]	T	A	1.339e^-4	0.822	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	481568	3L_481568_SNP [dm3] 3L_481568_SNP [dm6]	C	T	1.340e^-4	0.822	INTRON klar
3L	494705	3L_494705_SNP [dm3] 3L_494705_SNP [dm6]	T	C	1.340e^-4	0.822	INTRON klar
3L	491350	3L_491350_SNP [dm3] 3L_491350_SNP [dm6]	C	T	1.341e^-4	0.822	UPSTREAM klar INTRON klar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	11843491	2L_11843491_SNP [dm3] 2L_11843491_SNP [dm6]	T	A	1.347e^-4	0.822	UTR_5_PRIME CG42486 UTR_3_PRIME CG14933 UPSTREAM CG42486 INTRON Pde1c
3R	26679493	3R_26679493_SNP [dm3] 3R_30853771_SNP [dm6]	C	G	1.353e^-4	0.822	SYNONYMOUS_CODING tll	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	492723	2L_492723_SNP [dm3] 2L_492723_SNP [dm6]	G	A	1.353e^-4	0.822	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
3L	4656893	3L_4656893_SNP [dm3] 3L_4656893_SNP [dm6]	A	C	1.354e^-4	0.822	INTRON axo
3R	26878414	3R_26878414_SNP [dm3] 3R_31052692_SNP [dm6]	C	T	1.355e^-4	0.822	UTR_3_PRIME l_3_03670 DOWNSTREAM Aph-4	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	499820	3L_499820_SNP [dm3] 3L_499820_SNP [dm6]	G	T	1.359e^-4	0.822	DOWNSTREAM CG34267 INTRON klar
3L	481815	3L_481815_SNP [dm3] 3L_481815_SNP [dm6]	A	G	1.372e^-4	0.822	INTRON klar
X	17233781	X_17233781_SNP [dm3] X_17339748_SNP [dm6]	A	T	1.383e^-4	0.822	INTERGENIC
X	3546939	X_3546939_SNP [dm3] X_3652906_SNP [dm6]	C	T	1.383e^-4	0.822	INTRON AstA-R1
3L	9949490	3L_9949490_SNP [dm3] 3L_9956390_SNP [dm6]	C	T	1.384e^-4	0.822	INTRON CG34356
3R	20017162	3R_20017162_SNP [dm3] 3R_24191440_SNP [dm6]	T	C	1.384e^-4	0.822	NON_SYNONYMOUS_CODING jnj
X	16901620	X_16901620_SNP [dm3] X_17007587_SNP [dm6]	T	G	1.389e^-4	0.822	INTRON CG45002
2L	4503259	2L_4503259_SNP [dm3] 2L_4503259_SNP [dm6]	C	T	1.391e^-4	0.822	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26874059	3R_26874059_SNP [dm3] 3R_31048337_SNP [dm6]	C	G	1.392e^-4	0.822	UPSTREAM Aph-4 INTERGENIC
3L	842464	3L_842464_SNP [dm3] 3L_842464_SNP [dm6]	C	G	1.393e^-4	0.822	NON_SYNONYMOUS_CODING Gr61a SYNONYMOUS_CODING Gr61a
2L	17895741	2L_17895741_SNP [dm3] 2L_17895741_SNP [dm6]	C	T	1.393e^-4	0.822	INTERGENIC
3R	14677006	3R_14677006_SNP [dm3] 3R_18851284_SNP [dm6]	C	A	1.401e^-4	0.822	UPSTREAM CR45633 DOWNSTREAM CG31226 INTERGENIC
3L	491450	3L_491450_SNP [dm3] 3L_491450_SNP [dm6]	C	G	1.404e^-4	0.822	UPSTREAM klar INTRON klar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9190273	3L_9190273_SNP [dm3] 3L_9197173_SNP [dm6]	C	A	1.409e^-4	0.822	INTERGENIC
2R	9137010	2R_9137010_SNP [dm3] 2R_13249505_SNP [dm6]	G	A	1.409e^-4	0.822	SPLICE_SITE_REGION CG4712 DOWNSTREAM Mp20 INTRON CG4712
3R	14679041	3R_14679041_SNP [dm3] 3R_18853319_SNP [dm6]	A	T	1.417e^-4	0.822	INTERGENIC
2R	10573735	2R_10573735_SNP [dm3] 2R_14686230_SNP [dm6]	G	A	1.429e^-4	0.822	INTRON mspo
2R	14113642	2R_14113642_SNP [dm3] 2R_18226137_SNP [dm6]	G	A	1.434e^-4	0.822	UPSTREAM CR45310 INTERGENIC
3R	21442766	3R_21442766_SNP [dm3] 3R_25617044_SNP [dm6]	G	T	1.436e^-4	0.822	INTRON Npl4	TF binding site mE1_TFBS_ftz_f1
3R	12903335	3R_12903335_SNP [dm3] 3R_17077613_SNP [dm6]	A	G	1.440e^-4	0.822	INTRON Keap1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	466071	2R_466071_SNP [dm3] 2R_4578566_SNP [dm6]	G	T	1.445e^-4	0.822	INTERGENIC
2R	473165	2R_473165_SNP [dm3] 2R_4585660_SNP [dm6]	T	G	1.454e^-4	0.822	INTERGENIC
X	16083165	X_16083165_SNP [dm3] X_16189132_SNP [dm6]	C	T	1.459e^-4	0.822	INTERGENIC
3L	9344982	3L_9344982_SNP [dm3] 3L_9351882_SNP [dm6]	G	A	1.461e^-4	0.822	DOWNSTREAM PGRP-LF INTRON UGP
3L	4656913	3L_4656913_SNP [dm3] 3L_4656913_SNP [dm6]	A	C	1.465e^-4	0.822	INTRON axo
2L	4552378	2L_4552378_SNP [dm3] 2L_4552378_SNP [dm6]	A	G	1.467e^-4	0.822	INTRON dp	TF binding site mE1_TFBS_cad
3R	14550325	3R_14550325_SNP [dm3] 3R_18724603_SNP [dm6]	C	T	1.469e^-4	0.822	DOWNSTREAM CG7714 INTRON Cha
3L	3576742	3L_3576742_SNP [dm3] 3L_3576742_SNP [dm6]	C	T	1.469e^-4	0.822	INTRON Eip63E
X	11178193	X_11178193_SNP [dm3] X_11284160_SNP [dm6]	T	A	1.469e^-4	0.822	INTRON CG44422
3R	26858311	3R_26858311_SNP [dm3] 3R_31032589_SNP [dm6]	G	A	1.470e^-4	0.822	INTERGENIC
3L	2661599	3L_2661599_SNP [dm3] 3L_2661599_SNP [dm6]	G	A	1.476e^-4	0.822	UPSTREAM CG33234 DOWNSTREAM CG33233 INTRON Fife
3L	16509209	3L_16509209_DEL [dm3] 3L_16516109_DEL [dm6]	TT	A	1.478e^-4	0.822	INTRON CG43373
3R	26871557	3R_26871557_SNP [dm3] 3R_31045835_SNP [dm6]	T	G	1.486e^-4	0.822	UPSTREAM CG33920 INTRON CanA1	transposable element FlyBase
3L	10447467	3L_10447467_SNP [dm3] 3L_10454367_SNP [dm6]	C	T	1.489e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10229529	3L_10229529_SNP [dm3] 3L_10236429_SNP [dm6]	G	A	1.489e^-4	0.822	UPSTREAM CR44542 INTERGENIC
3R	19133623	3R_19133623_MNP [dm3] 3R_23307901_MNP [dm6]	GAT	TCC	1.497e^-4	0.822	INTRON pnt	TF binding site mE1_TFBS_inv
3L	3480980	3L_3480980_SNP [dm3] 3L_3480980_SNP [dm6]	C	T	1.504e^-4	0.822	INTRON CG42324
2R	473185	2R_473185_SNP [dm3] 2R_4585680_SNP [dm6]	T	G	1.508e^-4	0.822	INTERGENIC
3L	9104374	3L_9104374_SNP [dm3] 3L_9111274_SNP [dm6]	A	G	1.511e^-4	0.822	INTRON bol
2R	9921717	2R_9921717_SNP [dm3] 2R_14034212_SNP [dm6]	C	A	1.514e^-4	0.822	INTRON mam
X	18719403	X_18719403_SNP [dm3] X_18825370_SNP [dm6]	C	T	1.523e^-4	0.822	SYNONYMOUS_CODING CG42450	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16887193	3R_16887193_DEL [dm3] 3R_21061471_DEL [dm6]	ATTCGGCCCATCCAAGAA...	A	1.532e^-4	0.822	UPSTREAM Mvl DOWNSTREAM Cortactin INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3L	1164374	3L_1164374_SNP [dm3] 3L_1164374_SNP [dm6]	T	C	1.536e^-4	0.822	INTRON bab2	regulatory region REDfly_CRMs
X	7322037	X_7322037_SNP [dm3] X_7428004_SNP [dm6]	C	A	1.538e^-4	0.822	INTERGENIC
3R	19133663	3R_19133663_SNP [dm3] 3R_23307941_SNP [dm6]	A	G	1.545e^-4	0.822	INTRON pnt	TF binding site mE1_TFBS_inv
3R	26879026	3R_26879026_SNP [dm3] 3R_31053304_SNP [dm6]	C	T	1.558e^-4	0.822	NON_SYNONYMOUS_CODING l_3_03670 DOWNSTREAM Aph-4 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	18249785	2L_18249785_SNP [dm3] 2L_18249785_SNP [dm6]	C	A	1.569e^-4	0.822	INTRON CG42750
3R	24561449	3R_24561449_SNP [dm3] 3R_28735727_SNP [dm6]	A	G	1.570e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	473191	2R_473191_SNP [dm3] 2R_4585686_SNP [dm6]	A	G	1.576e^-4	0.822	INTERGENIC
3L	9346382	3L_9346382_SNP [dm3] 3L_9353282_SNP [dm6]	G	T	1.580e^-4	0.822	UPSTREAM CG32040 INTRON UGP
3L	2543660	3L_2543660_SNP [dm3] 3L_2543660_SNP [dm6]	A	G	1.581e^-4	0.822	INTRON Spn	TF binding site mE1_TFBS_cad
2L	19251756	2L_19251756_SNP [dm3] 2L_19251756_SNP [dm6]	A	G	1.584e^-4	0.822	INTERGENIC
2L	9280177	2L_9280177_SNP [dm3] 2L_9280177_SNP [dm6]	A	G	1.586e^-4	0.822	INTRON Ggamma30A
3L	489908	3L_489908_INS [dm3] 3L_489908_INS [dm6]	G	GGAAAG	1.586e^-4	0.822	INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	473192	2R_473192_INS [dm3] 2R_4585687_INS [dm6]	T	TCTG	1.600e^-4	0.822	INTERGENIC
2R	473161	2R_473161_SNP [dm3] 2R_4585656_SNP [dm6]	T	A	1.601e^-4	0.822	INTERGENIC
2L	4546219	2L_4546219_SNP [dm3] 2L_4546219_SNP [dm6]	G	T	1.604e^-4	0.822	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10941915	2L_10941915_SNP [dm3] 2L_10941915_SNP [dm6]	A	G	1.611e^-4	0.822	DOWNSTREAM CR44492 INTRON dpr2
2L	4546309	2L_4546309_SNP [dm3] 2L_4546309_SNP [dm6]	G	A	1.613e^-4	0.822	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15748318	3R_15748318_SNP [dm3] 3R_19922596_SNP [dm6]	G	T	1.616e^-4	0.822	UPSTREAM CR43282 INTRON CG4462	TF binding site mE1_TFBS_cad
3R	15748325	3R_15748325_SNP [dm3] 3R_19922603_SNP [dm6]	G	C	1.616e^-4	0.822	UPSTREAM CR43282 INTRON CG4462	TF binding site mE1_TFBS_cad
3R	25825836	3R_25825836_SNP [dm3] 3R_30000114_SNP [dm6]	T	C	1.622e^-4	0.822	SYNONYMOUS_CODING CG34298 UPSTREAM Tace DOWNSTREAM CG11504	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	21141057	X_21141057_SNP [dm3] X_21270030_SNP [dm6]	T	C	1.627e^-4	0.822	INTRON CG32521
3R	25988706	3R_25988706_SNP [dm3] 3R_30162984_SNP [dm6]	C	A	1.629e^-4	0.822	INTERGENIC
3R	22588249	3R_22588249_SNP [dm3] 3R_26762527_SNP [dm6]	A	G	1.631e^-4	0.822	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7998838	2L_7998838_SNP [dm3] 2L_7998838_SNP [dm6]	G	T	1.636e^-4	0.822	UPSTREAM Sirup & 1 other DOWNSTREAM Wwox INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	9883183	2R_9883183_SNP [dm3] 2R_13995678_SNP [dm6]	C	A	1.639e^-4	0.822	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	12325710	2L_12325710_SNP [dm3] 2L_12325710_SNP [dm6]	G	T	1.639e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	24767531	3R_24767531_SNP [dm3] 3R_28941809_SNP [dm6]	C	G	1.639e^-4	0.822	INTRON CG14521
2L	4549707	2L_4549707_DEL [dm3] 2L_4549707_DEL [dm6]	AA	A	1.644e^-4	0.822	INTRON dp
X	4709090	X_4709090_DEL [dm3] X_4815057_DEL [dm6]	GAGGGTATTATATTTCGAAC...	G	1.645e^-4	0.822	INTERGENIC
3L	8935392	3L_8935392_SNP [dm3] 3L_8942292_SNP [dm6]	T	C	1.648e^-4	0.822	UTR_3_PRIME orb2 DOWNSTREAM orb2 INTRON CG43783
3L	2582608	3L_2582608_DEL [dm3] 3L_2582608_DEL [dm6]	TATTTCTCTTTG...	T	1.655e^-4	0.822	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19563662	3R_19563662_SNP [dm3] 3R_23737940_SNP [dm6]	C	T	1.665e^-4	0.822	INTRON Hmgcr
X	21127050	X_21127050_SNP [dm3] X_21256023_SNP [dm6]	C	T	1.668e^-4	0.822	INTRON CG32521
2L	8511481	2L_8511481_SNP [dm3] 2L_8511481_SNP [dm6]	C	G	1.670e^-4	0.822	SYNONYMOUS_CODING CG13096 DOWNSTREAM CG13097	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1135162	3L_1135162_SNP [dm3] 3L_1135162_SNP [dm6]	A	G	1.671e^-4	0.822	INTERGENIC	regulatory region REDfly_CRMs
X	10185757	X_10185757_SNP [dm3] X_10291724_SNP [dm6]	G	T	1.673e^-4	0.822	INTRON alpha-Man-I
X	16147923	X_16147923_SNP [dm3] X_16253890_SNP [dm6]	A	G	1.673e^-4	0.822	UPSTREAM snRNA:U2:14B DOWNSTREAM snRNA:U5:14B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	13464813	3R_13464813_SNP [dm3] 3R_17639091_SNP [dm6]	T	C	1.678e^-4	0.822	INTRON CG43175 EXON CR45222
3L	3284733	3L_3284733_SNP [dm3] 3L_3284733_SNP [dm6]	T	A	1.681e^-4	0.822	INTRON CG12017
2L	13198313	2L_13198313_SNP [dm3] 2L_13198313_SNP [dm6]	T	A	1.685e^-4	0.822	INTRON CG16972	TF binding site mE1_TFBS_cad
2R	473176	2R_473176_SNP [dm3] 2R_4585671_SNP [dm6]	G	C	1.685e^-4	0.822	INTERGENIC
X	3794638	X_3794638_SNP [dm3] X_3900605_SNP [dm6]	T	A	1.695e^-4	0.822	INTRON CG42541
3L	9450600	3L_9450600_SNP [dm3] 3L_9457500_SNP [dm6]	A	T	1.698e^-4	0.822	NON_SYNONYMOUS_CODING CG3437 UPSTREAM CG3552 INTRON CG3552	TF binding site BDTNP1_TFBS_dl
3R	17652247	3R_17652247_SNP [dm3] 3R_21826525_SNP [dm6]	A	G	1.701e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	22903058	3L_22903058_SNP [dm3] 3L_22909958_SNP [dm6]	G	A	1.701e^-4	0.822	UPSTREAM CG12768 DOWNSTREAM CR45661 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	19133611	3R_19133611_DEL [dm3] 3R_23307889_DEL [dm6]	TCTT	T	1.705e^-4	0.822	INTRON pnt	TF binding site mE1_TFBS_inv
2L	11485404	2L_11485404_SNP [dm3] 2L_11485404_SNP [dm6]	G	A	1.706e^-4	0.822	NON_SYNONYMOUS_CODING CG43355 UTR_5_PRIME sala UPSTREAM sala	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	15026610	3R_15026610_SNP [dm3] 3R_19200888_SNP [dm6]	T	A	1.708e^-4	0.822	UTR_3_PRIME CG31475
2L	6532844	2L_6532844_SNP [dm3] 2L_6532844_SNP [dm6]	T	G	1.708e^-4	0.822	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15825028	3L_15825028_SNP [dm3] 3L_15831928_SNP [dm6]	A	T	1.714e^-4	0.822	UTR_3_PRIME dbo UPSTREAM CG12713 DOWNSTREAM dbo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	9281511	2L_9281511_SNP [dm3] 2L_9281511_SNP [dm6]	C	A	1.721e^-4	0.822	INTRON Ggamma30A
3R	19627264	3R_19627264_SNP [dm3] 3R_23801542_SNP [dm6]	T	C	1.723e^-4	0.822	UTR_3_PRIME mbc DOWNSTREAM CG33111
2R	17004383	2R_17004383_SNP [dm3] 2R_21116878_SNP [dm6]	T	C	1.724e^-4	0.822	INTRON ktub
3L	22779791	3L_22779791_INS [dm3] 3L_22786691_INS [dm6]	T	TAT	1.729e^-4	0.822	UTR_3_PRIME SPoCk
2R	472473	2R_472473_INS [dm3] 2R_4584968_INS [dm6]	C	CGTCTAAATAC...	1.730e^-4	0.822	INTERGENIC	transposable element FlyBase
2R	473194	2R_473194_SNP [dm3] 2R_4585689_SNP [dm6]	A	G	1.738e^-4	0.822	INTERGENIC
3L	1173331	3L_1173331_SNP [dm3] 3L_1173331_SNP [dm6]	A	G	1.740e^-4	0.822	SYNONYMOUS_CODING bab2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	9462166	X_9462166_SNP [dm3] X_9568133_SNP [dm6]	G	A	1.743e^-4	0.822	SYNONYMOUS_CODING Cubn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9344973	3L_9344973_SNP [dm3] 3L_9351873_SNP [dm6]	G	T	1.745e^-4	0.822	DOWNSTREAM PGRP-LF INTRON UGP
2L	12325115	2L_12325115_SNP [dm3] 2L_12325115_SNP [dm6]	T	C	1.752e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9131432	2R_9131432_SNP [dm3] 2R_13243927_SNP [dm6]	T	C	1.763e^-4	0.822	DOWNSTREAM CR45278 INTERGENIC
2L	4818476	2L_4818476_SNP [dm3] 2L_4818476_SNP [dm6]	A	C	1.788e^-4	0.822	UPSTREAM mir-4910 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	26612525	3R_26612525_DEL [dm3] 3R_30786803_DEL [dm6]	CGACTCAGAGTC...	C	1.791e^-4	0.822	UTR_3_PRIME zfh1
2R	13972970	2R_13972970_SNP [dm3] 2R_18085465_SNP [dm6]	T	A	1.801e^-4	0.822	INTRON CG34386
2R	8133273	2R_8133273_DEL [dm3] 2R_12245768_DEL [dm6]	ACT	A	1.815e^-4	0.822	DOWNSTREAM CR44315 INTERGENIC
2L	11435981	2L_11435981_SNP [dm3] 2L_11435981_SNP [dm6]	T	G	1.816e^-4	0.822	INTRON salm	TF binding site BDTNP1_TFBS_twi
2R	15815381	2R_15815381_DEL [dm3] 2R_19927876_DEL [dm6]	CAACTTTTTATACTTATCCC...	C	1.818e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	17202727	2R_17202727_DEL [dm3] 2R_21315222_DEL [dm6]	CTCTTCCCT	C	1.821e^-4	0.822	SPLICE_SITE_REGION CG9485 INTRON CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18542590	3R_18542590_SNP [dm3] 3R_22716868_SNP [dm6]	T	A	1.823e^-4	0.822	INTRON wge	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	16578996	X_16578996_INS [dm3] X_16684963_INS [dm6]	G	GAGAG	1.833e^-4	0.822	UTR_3_PRIME Sep4
3L	14410434	3L_14410434_SNP [dm3] 3L_14417334_SNP [dm6]	G	A	1.844e^-4	0.822	INTRON bbg
2L	4552365	2L_4552365_SNP [dm3] 2L_4552365_SNP [dm6]	T	C	1.849e^-4	0.822	INTRON dp
2R	9137125	2R_9137125_SNP [dm3] 2R_13249620_SNP [dm6]	T	C	1.853e^-4	0.822	DOWNSTREAM Mp20 INTRON CG4712
2L	4387371	2L_4387371_SNP [dm3] 2L_4387371_SNP [dm6]	G	A	1.854e^-4	0.822	UPSTREAM Psf2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8995136	3L_8995136_SNP [dm3] 3L_9002036_SNP [dm6]	T	C	1.858e^-4	0.822	SYNONYMOUS_CODING CG5087	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	9785296	2R_9785296_SNP [dm3] 2R_13897791_SNP [dm6]	G	A	1.867e^-4	0.822	UPSTREAM shot INTRON shot	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	7489812	X_7489812_SNP [dm3] X_7595779_SNP [dm6]	C	T	1.868e^-4	0.822	INTERGENIC	regulatory region REDfly_CRMs
2R	8925318	2R_8925318_SNP [dm3] 2R_13037813_SNP [dm6]	C	T	1.870e^-4	0.822	INTERGENIC
3R	24094892	3R_24094892_SNP [dm3] 3R_28269170_SNP [dm6]	G	A	1.872e^-4	0.822	INTERGENIC
3L	13686282	3L_13686282_SNP [dm3] 3L_13693182_SNP [dm6]	A	G	1.875e^-4	0.822	INTRON bru-3
2R	9899061	2R_9899061_SNP [dm3] 2R_14011556_SNP [dm6]	A	G	1.885e^-4	0.822	INTRON mam
2R	8133105	2R_8133105_SNP [dm3] 2R_12245600_SNP [dm6]	A	C	1.886e^-4	0.822	UPSTREAM CG43244 INTERGENIC
3L	476810	3L_476810_SNP [dm3] 3L_476810_SNP [dm6]	C	A	1.890e^-4	0.822	INTRON klar
2L	4336531	2L_4336531_SNP [dm3] 2L_4336531_SNP [dm6]	A	G	1.894e^-4	0.822	UTR_5_PRIME Atet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	7392642	2R_7392642_SNP [dm3] 2R_11505137_SNP [dm6]	G	A	1.897e^-4	0.822	INTRON inv
2R	7392653	2R_7392653_INS [dm3] 2R_11505148_INS [dm6]	C	CGAGTTGAATAATTTATAAC...	1.897e^-4	0.822	INTRON inv
2R	7392659	2R_7392659_INS [dm3] 2R_11505154_INS [dm6]	A	ACTTATCAAAATAATATGTT...	1.897e^-4	0.822	INTRON inv
2R	7392661	2R_7392661_SNP [dm3] 2R_11505156_SNP [dm6]	A	G	1.897e^-4	0.822	INTRON inv
2R	7392668	2R_7392668_SNP [dm3] 2R_11505163_SNP [dm6]	A	G	1.897e^-4	0.822	INTRON inv
2L	6809396	2L_6809396_SNP [dm3] 2L_6809396_SNP [dm6]	G	A	1.899e^-4	0.822	INTERGENIC
X	3546984	X_3546984_INS [dm3] X_3652951_INS [dm6]	T	TC	1.902e^-4	0.822	INTRON AstA-R1
3L	17455851	3L_17455851_SNP [dm3] 3L_17462751_SNP [dm6]	G	A	1.906e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	10423139	2L_10423139_SNP [dm3] 2L_10423139_SNP [dm6]	T	A	1.908e^-4	0.822	UPSTREAM CG5168 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	4511147	2L_4511147_SNP [dm3] 2L_4511147_SNP [dm6]	G	C	1.910e^-4	0.822	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14677017	3R_14677017_SNP [dm3] 3R_18851295_SNP [dm6]	T	A	1.913e^-4	0.822	UPSTREAM CR45633 DOWNSTREAM CG31226 INTERGENIC
3R	20608614	3R_20608614_SNP [dm3] 3R_24782892_SNP [dm6]	A	T	1.920e^-4	0.822	NON_SYNONYMOUS_CODING CG42331	TF binding site mE1_TFBS_cad
2L	11056663	2L_11056663_SNP [dm3] 2L_11056663_SNP [dm6]	A	G	1.923e^-4	0.822	UPSTREAM Samuel INTRON Samuel	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18942529	2R_18942529_SNP [dm3] 2R_23055006_SNP [dm6]	T	C	1.930e^-4	0.822	UPSTREAM CG44252 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	9416100	2L_9416100_SNP [dm3] 2L_9416100_SNP [dm6]	C	A	1.934e^-4	0.822	UPSTREAM Shawl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	13253034	X_13253034_SNP [dm3] X_13359001_SNP [dm6]	C	A	1.943e^-4	0.822	UPSTREAM Syt12 INTERGENIC
2L	4505273	2L_4505273_SNP [dm3] 2L_4505273_SNP [dm6]	T	C	1.948e^-4	0.822	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	7567530	2L_7567530_SNP [dm3] 2L_7567530_SNP [dm6]	T	A	1.950e^-4	0.822	INTRON RapGAP1
2L	15364347	2L_15364347_SNP [dm3] 2L_15364347_SNP [dm6]	A	G	1.950e^-4	0.822	INTERGENIC
3L	1467431	3L_1467431_SNP [dm3] 3L_1467431_SNP [dm6]	G	A	1.956e^-4	0.822	UTR_3_PRIME rho INTRON Ptp61F	TF binding site mE1_TFBS_cad
2R	18708417	2R_18708417_SNP [dm3] 2R_22820912_SNP [dm6]	T	C	1.959e^-4	0.822	UPSTREAM CG42284 INTRON CG30271	TF binding site mE1_TFBS_chinmo
2L	4546305	2L_4546305_SNP [dm3] 2L_4546305_SNP [dm6]	G	T	1.960e^-4	0.822	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4505891	2L_4505891_SNP [dm3] 2L_4505891_SNP [dm6]	G	A	1.962e^-4	0.822	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4506020	2L_4506020_SNP [dm3] 2L_4506020_SNP [dm6]	A	G	1.962e^-4	0.822	SYNONYMOUS_CODING dp INTRON dp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	10554261	3R_10554261_SNP [dm3] 3R_14728539_SNP [dm6]	T	A	1.971e^-4	0.822	INTRON CG7530
3R	20017323	3R_20017323_SNP [dm3] 3R_24191601_SNP [dm6]	C	T	1.974e^-4	0.822	NON_SYNONYMOUS_CODING jnj
2R	9896872	2R_9896872_SNP [dm3] 2R_14009367_SNP [dm6]	A	G	1.977e^-4	0.822	UTR_5_PRIME mam INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	9344968	3L_9344968_SNP [dm3] 3L_9351868_SNP [dm6]	G	C	1.984e^-4	0.822	DOWNSTREAM PGRP-LF INTRON UGP
3R	24707022	3R_24707022_SNP [dm3] 3R_28881300_SNP [dm6]	T	A	1.987e^-4	0.822	SYNONYMOUS_CODING CG14527 INTRON CG33203
3L	6068935	3L_6068935_SNP [dm3] 3L_6075835_SNP [dm6]	T	C	1.991e^-4	0.822	SYNONYMOUS_CODING CG6610 UPSTREAM CG13295 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	4818527	2L_4818527_SNP [dm3] 2L_4818527_SNP [dm6]	T	A	1.994e^-4	0.822	UPSTREAM mir-4910 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	14224397	X_14224397_SNP [dm3] X_14330364_SNP [dm6]	G	A	1.994e^-4	0.822	INTRON dpr8
3L	15848325	3L_15848325_SNP [dm3] 3L_15855225_SNP [dm6]	G	A	2.000e^-4	0.822	INTRON pHCl
2L	17860676	2L_17860676_SNP [dm3] 2L_17860676_SNP [dm6]	G	C	2.005e^-4	0.822	INTRON CadN2
2L	4388973	2L_4388973_SNP [dm3] 2L_4388973_SNP [dm6]	A	G	2.010e^-4	0.822	INTRON Tps1
2L	7479949	2L_7479949_SNP [dm3] 2L_7479949_SNP [dm6]	C	T	2.010e^-4	0.822	SYNONYMOUS_CODING Ziz
3R	26878120	3R_26878120_SNP [dm3] 3R_31052398_SNP [dm6]	G	T	2.011e^-4	0.822	NON_SYNONYMOUS_CODING Aph-4 DOWNSTREAM l_3_03670	TF binding site mE1_TFBS_sbb
3L	701711	3L_701711_SNP [dm3] 3L_701711_SNP [dm6]	T	A	2.021e^-4	0.822	INTERGENIC
3L	701713	3L_701713_INS [dm3] 3L_701713_INS [dm6]	G	GG	2.021e^-4	0.822	INTERGENIC
3L	701719	3L_701719_SNP [dm3] 3L_701719_SNP [dm6]	C	A	2.021e^-4	0.822	INTERGENIC
2L	5403059	2L_5403059_SNP [dm3] 2L_5403059_SNP [dm6]	C	A	2.029e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	7496901	3L_7496901_SNP [dm3] 3L_7503801_SNP [dm6]	T	A	2.030e^-4	0.822	INTERGENIC
3L	897188	3L_897188_SNP [dm3] 3L_897188_SNP [dm6]	T	C	2.032e^-4	0.822	SYNONYMOUS_CODING CG34056 UPSTREAM CG34057
2L	3929748	2L_3929748_SNP [dm3] 2L_3929748_SNP [dm6]	G	T	2.045e^-4	0.822	INTRON fred
3L	6068237	3L_6068237_SNP [dm3] 3L_6075137_SNP [dm6]	A	G	2.050e^-4	0.822	UTR_5_PRIME CG13295 UPSTREAM CG6610	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	7496902	3L_7496902_SNP [dm3] 3L_7503802_SNP [dm6]	A	C	2.057e^-4	0.822	INTERGENIC
2R	17203523	2R_17203523_SNP [dm3] 2R_21316018_SNP [dm6]	A	C	2.059e^-4	0.822	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	19281036	2L_19281036_SNP [dm3] 2L_19281036_SNP [dm6]	T	G	2.060e^-4	0.822	INTERGENIC
2R	473183	2R_473183_SNP [dm3] 2R_4585678_SNP [dm6]	G	A	2.067e^-4	0.822	INTERGENIC
2L	19281022	2L_19281022_SNP [dm3] 2L_19281022_SNP [dm6]	A	T	2.068e^-4	0.822	INTERGENIC
2R	10836840	2R_10836840_SNP [dm3] 2R_14949335_SNP [dm6]	T	G	2.070e^-4	0.822	INTRON aPKC
2L	4502979	2L_4502979_SNP [dm3] 2L_4502979_SNP [dm6]	A	T	2.076e^-4	0.822	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	701702	3L_701702_SNP [dm3] 3L_701702_SNP [dm6]	G	T	2.100e^-4	0.822	INTERGENIC
X	3546855	X_3546855_SNP [dm3] X_3652822_SNP [dm6]	A	G	2.112e^-4	0.822	INTRON AstA-R1
X	7522011	X_7522011_SNP [dm3] X_7627978_SNP [dm6]	C	T	2.120e^-4	0.822	INTRON ct	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
3R	23937052	3R_23937052_SNP [dm3] 3R_28111330_SNP [dm6]	C	G	2.121e^-4	0.822	INTERGENIC
3R	23937038	3R_23937038_SNP [dm3] 3R_28111316_SNP [dm6]	T	G	2.131e^-4	0.822	INTERGENIC
3L	14450034	3L_14450034_SNP [dm3] 3L_14456934_SNP [dm6]	C	T	2.131e^-4	0.822	INTRON bbg	TF binding site mE1_TFBS_cad
3R	25342981	3R_25342981_SNP [dm3] 3R_29517259_SNP [dm6]	C	A	2.133e^-4	0.822	DOWNSTREAM CG2014 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	2637954	3R_2637954_SNP [dm3] 3R_6812232_SNP [dm6]	A	T	2.133e^-4	0.822	INTRON CR42651	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	21238207	3R_21238207_SNP [dm3] 3R_25412485_SNP [dm6]	A	G	2.142e^-4	0.822	INTRON Fur1
X	11353524	X_11353524_SNP [dm3] X_11459491_SNP [dm6]	C	T	2.145e^-4	0.822	UPSTREAM CG43155 DOWNSTREAM HP5 INTERGENIC
2L	17048510	2L_17048510_SNP [dm3] 2L_17048510_SNP [dm6]	T	G	2.154e^-4	0.822	UPSTREAM CG15136 INTERGENIC
2L	12325195	2L_12325195_INS [dm3] 2L_12325195_INS [dm6]	A	ACGTAAAGCAAAATATTTTC...	2.155e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2916727	3R_2916727_SNP [dm3] 3R_7091005_SNP [dm6]	T	C	2.167e^-4	0.822	INTERGENIC	TF binding site mE1_TFBS_cad transposable element FlyBase
3L	3309385	3L_3309385_INS [dm3] 3L_3309385_INS [dm6]	T	TT	2.168e^-4	0.822	UPSTREAM ZnT63C INTRON ZnT63C
2R	7286728	2R_7286728_SNP [dm3] 2R_11399223_SNP [dm6]	G	A	2.178e^-4	0.822	DOWNSTREAM tRNA:CR30506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10511632	2R_10511632_SNP [dm3] 2R_14624127_SNP [dm6]	T	A	2.178e^-4	0.822	UPSTREAM snoRNA:Or-CD4 DOWNSTREAM snoRNA:Me28S-A992 & 3 others INTRON Uhg5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	14222878	X_14222878_SNP [dm3] X_14328845_SNP [dm6]	A	T	2.179e^-4	0.822	INTRON dpr8
2R	9916555	2R_9916555_SNP [dm3] 2R_14029050_SNP [dm6]	C	T	2.184e^-4	0.822	NON_SYNONYMOUS_CODING CG18371 INTRON mam
2R	8900997	2R_8900997_SNP [dm3] 2R_13013492_SNP [dm6]	A	T	2.187e^-4	0.822	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	13253037	X_13253037_SNP [dm3] X_13359004_SNP [dm6]	T	C	2.187e^-4	0.822	UPSTREAM Syt12 INTERGENIC
3L	12577744	3L_12577744_DEL [dm3] 3L_12584644_DEL [dm6]	TGGACGTGCGTTTCCT...	T	2.190e^-4	0.822	INTRON ara
3L	2379239	3L_2379239_SNP [dm3] 3L_2379239_SNP [dm6]	T	C	2.192e^-4	0.822	UTR_5_PRIME CG45186 INTRON CG45186
3L	12306535	3L_12306535_SNP [dm3] 3L_12313435_SNP [dm6]	G	A	2.196e^-4	0.822	INTERGENIC
3L	15884625	3L_15884625_SNP [dm3] 3L_15891525_SNP [dm6]	A	G	2.198e^-4	0.822	INTRON pHCl
3R	23256058	3R_23256058_SNP [dm3] 3R_27430336_SNP [dm6]	G	T	2.202e^-4	0.822	INTRON side
2L	9469433	2L_9469433_SNP [dm3] 2L_9469433_SNP [dm6]	C	T	2.208e^-4	0.822	UPSTREAM CR43769 INTERGENIC
3R	19041019	3R_19041019_INS [dm3] 3R_23215297_INS [dm6]	A	AGCAGTCTTTG...	2.208e^-4	0.822	UPSTREAM cnc INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2L	934798	2L_934798_SNP [dm3] 2L_934798_SNP [dm6]	C	T	2.219e^-4	0.822	INTRON CG4341	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	630491	3L_630491_SNP [dm3] 3L_630491_SNP [dm6]	C	A	2.223e^-4	0.822	EXON CR43334	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	409302	2R_409302_SNP [dm3] 2R_4521797_SNP [dm6]	T	C	2.227e^-4	0.822	INTERGENIC
2R	473189	2R_473189_SNP [dm3] 2R_4585684_SNP [dm6]	A	C	2.228e^-4	0.822	INTERGENIC
3R	19300520	3R_19300520_SNP [dm3] 3R_23474798_SNP [dm6]	T	G	2.239e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	1177809	3L_1177809_SNP [dm3] 3L_1177809_SNP [dm6]	A	T	2.240e^-4	0.822	UPSTREAM bab2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	10785522	2R_10785522_SNP [dm3] 2R_14898017_SNP [dm6]	G	A	2.240e^-4	0.822	UPSTREAM Cyp317a1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2L	7568147	2L_7568147_SNP [dm3] 2L_7568147_SNP [dm6]	G	A	2.240e^-4	0.822	INTRON RapGAP1
2L	9281728	2L_9281728_SNP [dm3] 2L_9281728_SNP [dm6]	T	C	2.241e^-4	0.822	INTRON Ggamma30A
3R	27458721	3R_27458721_SNP [dm3] 3R_31632999_SNP [dm6]	A	G	2.245e^-4	0.822	INTRON kek6
2L	4505836	2L_4505836_SNP [dm3] 2L_4505836_SNP [dm6]	C	T	2.246e^-4	0.822	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4506233	2L_4506233_SNP [dm3] 2L_4506233_SNP [dm6]	C	A	2.246e^-4	0.822	SYNONYMOUS_CODING dp INTRON dp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	13253185	X_13253185_SNP [dm3] X_13359152_SNP [dm6]	C	A	2.247e^-4	0.822	UPSTREAM Syt12 INTERGENIC
2R	16012657	2R_16012657_DEL [dm3] 2R_20125152_DEL [dm6]	CA	C	2.250e^-4	0.822	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	18595277	3R_18595277_SNP [dm3] 3R_22769555_SNP [dm6]	A	T	2.250e^-4	0.822	SYNONYMOUS_CODING CG43092 UPSTREAM CG43091 DOWNSTREAM CG43093 INTRON Usp12-46 & 1 other
X	5803500	X_5803500_SNP [dm3] X_5909467_SNP [dm6]	C	T	2.252e^-4	0.822	SYNONYMOUS_CODING CG12236
3L	9344980	3L_9344980_SNP [dm3] 3L_9351880_SNP [dm6]	G	A	2.261e^-4	0.822	DOWNSTREAM PGRP-LF INTRON UGP
2L	8143887	2L_8143887_SNP [dm3] 2L_8143887_SNP [dm6]	A	G	2.261e^-4	0.822	SYNONYMOUS_CODING CG42762 DOWNSTREAM CG42763 INTRON CG8552	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9559223	X_9559223_SNP [dm3] X_9665190_SNP [dm6]	A	G	2.265e^-4	0.822	DOWNSTREAM nej INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16614764	X_16614764_SNP [dm3] X_16720731_SNP [dm6]	T	A	2.265e^-4	0.822	UTR_5_PRIME CG34325 UPSTREAM CG32572
2R	473144	2R_473144_SNP [dm3] 2R_4585639_SNP [dm6]	A	T	2.266e^-4	0.822	INTERGENIC
X	20878379	X_20878379_SNP [dm3] X_21007352_SNP [dm6]	T	C	2.273e^-4	0.822	INTERGENIC
2L	20472013	2L_20472013_SNP [dm3] 2L_20472013_SNP [dm6]	A	G	2.273e^-4	0.822	DOWNSTREAM CG43233 INTRON CR44980
3L	2689666	3L_2689666_INS [dm3] 3L_2689666_INS [dm6]	T	TT	2.277e^-4	0.822	UTR_5_PRIME Fife
2R	410310	2R_410310_SNP [dm3] 2R_4522805_SNP [dm6]	C	T	2.287e^-4	0.822	INTERGENIC	transposable element FlyBase
2L	6809423	2L_6809423_SNP [dm3] 2L_6809423_SNP [dm6]	C	A	2.290e^-4	0.822	INTERGENIC
3L	12969003	3L_12969003_SNP [dm3] 3L_12975903_SNP [dm6]	A	G	2.294e^-4	0.822	INTERGENIC
3R	24761199	3R_24761199_SNP [dm3] 3R_28935477_SNP [dm6]	G	A	2.295e^-4	0.822	INTRON CG14521
2R	415055	2R_415055_SNP [dm3] 2R_4527550_SNP [dm6]	T	A	2.297e^-4	0.822	INTERGENIC	transposable element FlyBase
X	7333026	X_7333026_SNP [dm3] X_7438993_SNP [dm6]	C	A	2.300e^-4	0.822	INTERGENIC
2L	4552366	2L_4552366_SNP [dm3] 2L_4552366_SNP [dm6]	C	T	2.301e^-4	0.822	INTRON dp	TF binding site mE1_TFBS_cad
3L	6068967	3L_6068967_SNP [dm3] 3L_6075867_SNP [dm6]	G	A	2.302e^-4	0.822	SYNONYMOUS_CODING CG6610 UPSTREAM CG13295 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	2657716	3L_2657716_SNP [dm3] 3L_2657716_SNP [dm6]	T	C	2.304e^-4	0.822	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_chinmo
X	20430337	X_20430337_SNP [dm3] X_20559310_SNP [dm6]	G	C	2.304e^-4	0.822	INTRON RunxB
3R	17555939	3R_17555939_SNP [dm3] 3R_21730217_SNP [dm6]	G	T	2.308e^-4	0.822	UPSTREAM CR43096 INTERGENIC
2L	9280130	2L_9280130_SNP [dm3] 2L_9280130_SNP [dm6]	A	T	2.311e^-4	0.822	INTRON Ggamma30A
3L	9896365	3L_9896365_SNP [dm3] 3L_9903265_SNP [dm6]	C	T	2.318e^-4	0.822	DOWNSTREAM nudE INTERGENIC
X	22150813	X_22150813_SNP [dm3] X_22748977_SNP [dm6]	T	C	2.321e^-4	0.822	INTRON CR44997
3L	6068358	3L_6068358_SNP [dm3] 3L_6075258_SNP [dm6]	T	A	2.323e^-4	0.822	UPSTREAM CG6610 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
X	5350566	X_5350566_SNP [dm3] X_5456533_SNP [dm6]	A	T	2.330e^-4	0.822	INTRON SPR
2L	13046572	2L_13046572_SNP [dm3] 2L_13046572_SNP [dm6]	A	T	2.339e^-4	0.822	INTRON CG9932
2L	3130960	2L_3130960_SNP [dm3] 2L_3130960_SNP [dm6]	C	A	2.341e^-4	0.822	INTRON toc
3L	9011594	3L_9011594_SNP [dm3] 3L_9018494_SNP [dm6]	G	A	2.343e^-4	0.822	INTRON Doc2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	13972979	2R_13972979_SNP [dm3] 2R_18085474_SNP [dm6]	C	T	2.347e^-4	0.822	INTRON CG34386
3L	15037568	3L_15037568_SNP [dm3] 3L_15044468_SNP [dm6]	A	G	2.351e^-4	0.822	UPSTREAM ind INTRON Sytbeta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	4307279	3R_4307279_SNP [dm3] 3R_8481557_SNP [dm6]	G	T	2.355e^-4	0.822	INTERGENIC
3L	22920852	3L_22920852_SNP [dm3] 3L_22927752_SNP [dm6]	G	T	2.356e^-4	0.822	INTERGENIC
3L	17472077	3L_17472077_SNP [dm3] 3L_17478977_SNP [dm6]	T	C	2.359e^-4	0.822	UPSTREAM qjt & 1 other INTERGENIC
2R	8913557	2R_8913557_SNP [dm3] 2R_13026052_SNP [dm6]	T	C	2.362e^-4	0.822	INTERGENIC
3R	13590459	3R_13590459_SNP [dm3] 3R_17764737_SNP [dm6]	T	C	2.364e^-4	0.822	INTERGENIC
3L	10606804	3L_10606804_SNP [dm3] 3L_10613704_SNP [dm6]	T	A	2.372e^-4	0.822	INTERGENIC
3L	3480997	3L_3480997_SNP [dm3] 3L_3480997_SNP [dm6]	T	G	2.373e^-4	0.822	INTRON CG42324
3L	2260288	3L_2260288_SNP [dm3] 3L_2260288_SNP [dm6]	G	A	2.375e^-4	0.822	SYNONYMOUS_CODING oxt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	9207720	X_9207720_SNP [dm3] X_9313687_SNP [dm6]	A	T	2.382e^-4	0.822	UPSTREAM CR44534 INTERGENIC
3L	5238268	3L_5238268_SNP [dm3] 3L_5245168_SNP [dm6]	G	T	2.391e^-4	0.822	INTRON shep
X	5383048	X_5383048_SNP [dm3] X_5489015_SNP [dm6]	G	A	2.393e^-4	0.822	INTRON SPR
3R	18541740	3R_18541740_SNP [dm3] 3R_22716018_SNP [dm6]	T	C	2.403e^-4	0.822	SYNONYMOUS_CODING wge	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18279419	2R_18279419_SNP [dm3] 2R_22391914_SNP [dm6]	A	G	2.403e^-4	0.822	SYNONYMOUS_CODING CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15945978	2R_15945978_SNP [dm3] 2R_20058473_SNP [dm6]	C	T	2.405e^-4	0.822	EXON CR44631	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
3R	14675777	3R_14675777_SNP [dm3] 3R_18850055_SNP [dm6]	T	A	2.412e^-4	0.822	UPSTREAM CG18208 DOWNSTREAM CR45633 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	11201067	2L_11201067_SNP [dm3] 2L_11201067_SNP [dm6]	C	G	2.422e^-4	0.822	INTRON Ca-beta
3L	9344969	3L_9344969_SNP [dm3] 3L_9351869_SNP [dm6]	A	G	2.430e^-4	0.822	DOWNSTREAM PGRP-LF INTRON UGP
3L	14363696	3L_14363696_SNP [dm3] 3L_14370596_SNP [dm6]	C	T	2.444e^-4	0.822	UPSTREAM CG13481 INTERGENIC
3L	8935389	3L_8935389_SNP [dm3] 3L_8942289_SNP [dm6]	G	C	2.446e^-4	0.822	UTR_3_PRIME orb2 DOWNSTREAM orb2 INTRON CG43783
3L	2805123	3L_2805123_SNP [dm3] 3L_2805123_SNP [dm6]	C	T	2.447e^-4	0.822	INTRON CG43444
X	8555143	X_8555143_SNP [dm3] X_8661110_SNP [dm6]	T	C	2.455e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	421358	2R_421358_SNP [dm3] 2R_4533853_SNP [dm6]	C	A	2.456e^-4	0.822	INTERGENIC	transposable element FlyBase
2L	4554214	2L_4554214_SNP [dm3] 2L_4554214_SNP [dm6]	G	A	2.462e^-4	0.822	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6040376	2R_6040376_SNP [dm3] 2R_10152871_SNP [dm6]	C	A	2.467e^-4	0.822	SPLICE_SITE_REGION CR45133 UPSTREAM CR45133 INTRON KCNQ & 1 other
3R	18606126	3R_18606126_SNP [dm3] 3R_22780404_SNP [dm6]	C	A	2.478e^-4	0.822	UPSTREAM CR43654 INTRON CG7029 EXON CR43654	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22276027	3R_22276027_SNP [dm3] 3R_26450305_SNP [dm6]	T	G	2.481e^-4	0.822	SYNONYMOUS_CODING Hex-t1 UPSTREAM Hex-t2
3R	25816676	3R_25816676_SNP [dm3] 3R_29990954_SNP [dm6]	T	C	2.481e^-4	0.822	DOWNSTREAM Acph-1 & 1 other INTERGENIC
3L	9956786	3L_9956786_SNP [dm3] 3L_9963686_SNP [dm6]	C	T	2.481e^-4	0.822	INTRON CG34356
2L	4546687	2L_4546687_SNP [dm3] 2L_4546687_SNP [dm6]	A	G	2.481e^-4	0.822	NON_SYNONYMOUS_CODING dp INTRON dp
3R	8623344	3R_8623344_SNP [dm3] 3R_12797622_SNP [dm6]	T	C	2.489e^-4	0.822	INTERGENIC
X	7322042	X_7322042_SNP [dm3] X_7428009_SNP [dm6]	C	A	2.490e^-4	0.822	INTERGENIC
X	20571210	X_20571210_SNP [dm3] X_20700183_SNP [dm6]	C	T	2.491e^-4	0.822	INTERGENIC	regulatory region FlyBase REDfly_CRMs
2R	19595129	2R_19595129_SNP [dm3] 2R_23707606_SNP [dm6]	T	C	2.493e^-4	0.822	SYNONYMOUS_CODING l_2_tid INTRON l_2_not	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	16616809	X_16616809_SNP [dm3] X_16722776_SNP [dm6]	T	C	2.498e^-4	0.822	SYNONYMOUS_CODING CG32572	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17203805	2R_17203805_SNP [dm3] 2R_21316300_SNP [dm6]	T	G	2.504e^-4	0.822	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	22021106	2L_22021106_SNP [dm3] 2L_22021106_SNP [dm6]	G	A	2.508e^-4	0.822	NON_SYNONYMOUS_CODING tio DOWNSTREAM CR33987	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14420035	2R_14420035_SNP [dm3] 2R_18532530_SNP [dm6]	C	G	2.510e^-4	0.822	INTRON CG10924	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20608114	3R_20608114_SNP [dm3] 3R_24782392_SNP [dm6]	G	A	2.510e^-4	0.822	SYNONYMOUS_CODING CG42331	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	3142165	3L_3142165_SNP [dm3] 3L_3142165_SNP [dm6]	G	A	2.513e^-4	0.822	INTRON CG11537	TF binding site mE1_TFBS_HSA
2R	4074279	2R_4074279_INS [dm3] 2R_8186774_INS [dm6]	A	TT	2.514e^-4	0.822	INTRON LRP1
2R	14273833	2R_14273833_DEL [dm3] 2R_18386328_DEL [dm6]	TG	T	2.514e^-4	0.822	UPSTREAM CG15067 & 1 other INTERGENIC
2R	8925239	2R_8925239_SNP [dm3] 2R_13037734_SNP [dm6]	G	A	2.518e^-4	0.822	INTERGENIC
3L	16731035	3L_16731035_SNP [dm3] 3L_16737935_SNP [dm6]	G	A	2.527e^-4	0.822	SYNONYMOUS_CODING CG9701	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	3601641	2R_3601641_DEL [dm3] 2R_7714136_DEL [dm6]	ATACAAAATATTCCTATGTA...	A	2.529e^-4	0.822	UTR_3_PRIME CG1942 UPSTREAM CG1946	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	14592781	3L_14592781_SNP [dm3] 3L_14599681_SNP [dm6]	G	T	2.530e^-4	0.822	UPSTREAM HGTX INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	6910100	2L_6910100_SNP [dm3] 2L_6910100_SNP [dm6]	T	C	2.531e^-4	0.822	SYNONYMOUS_CODING Rat1 DOWNSTREAM Wee1	TF binding site mE1_TFBS_sens
2L	4514307	2L_4514307_DEL [dm3] 2L_4514307_DEL [dm6]	GG	G	2.531e^-4	0.822	INTRON dp
2R	9137072	2R_9137072_SNP [dm3] 2R_13249567_SNP [dm6]	A	T	2.532e^-4	0.822	DOWNSTREAM Mp20 INTRON CG4712
2L	2914838	2L_2914838_SNP [dm3] 2L_2914838_SNP [dm6]	G	C	2.541e^-4	0.822	INTRON lilli
2L	3398285	2L_3398285_SNP [dm3] 2L_3398285_SNP [dm6]	C	T	2.543e^-4	0.822	NON_SYNONYMOUS_CODING CG34175 UPSTREAM CR44792
3R	13781156	3R_13781156_SNP [dm3] 3R_17955434_SNP [dm6]	A	G	2.558e^-4	0.822	INTRON cpo
2L	2894596	2L_2894596_SNP [dm3] 2L_2894596_SNP [dm6]	A	G	2.563e^-4	0.822	INTRON lilli	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19377123	2L_19377123_SNP [dm3] 2L_19377123_SNP [dm6]	T	C	2.565e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	492325	2L_492325_INS [dm3] 2L_492325_INS [dm6]	C	CC	2.569e^-4	0.822	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	20878070	X_20878070_SNP [dm3] X_21007043_SNP [dm6]	A	G	2.569e^-4	0.822	INTERGENIC
3L	15848330	3L_15848330_SNP [dm3] 3L_15855230_SNP [dm6]	G	A	2.573e^-4	0.822	INTRON pHCl
2L	18303265	2L_18303265_SNP [dm3] 2L_18303265_SNP [dm6]	A	G	2.581e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA
3R	21963074	3R_21963074_DEL [dm3] 3R_26137352_DEL [dm6]	CC	C	2.582e^-4	0.822	DOWNSTREAM CG6142 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3R	22767651	3R_22767651_SNP [dm3] 3R_26941929_SNP [dm6]	C	T	2.587e^-4	0.822	SYNONYMOUS_CODING sda	TF binding site mE1_TFBS_cad
3R	19904836	3R_19904836_SNP [dm3] 3R_24079114_SNP [dm6]	G	T	2.597e^-4	0.822	INTRON 4EHP
2R	8583754	2R_8583754_SNP [dm3] 2R_12696249_SNP [dm6]	A	C	2.598e^-4	0.822	INTERGENIC
2L	2314722	2L_2314722_SNP [dm3] 2L_2314722_SNP [dm6]	T	C	2.604e^-4	0.822	INTRON CG9967 & 1 other
X	19309901	X_19309901_SNP [dm3] X_19415868_SNP [dm6]	T	G	2.605e^-4	0.822	INTRON kek5
2L	16012167	2L_16012167_SNP [dm3] 2L_16012167_SNP [dm6]	A	G	2.612e^-4	0.822	INTRON beat-Ic
2L	5098135	2L_5098135_SNP [dm3] 2L_5098135_SNP [dm6]	T	G	2.614e^-4	0.822	SYNONYMOUS_CODING CG4230	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9769960	2R_9769960_SNP [dm3] 2R_13882455_SNP [dm6]	G	A	2.615e^-4	0.822	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad
2R	17408023	2R_17408023_SNP [dm3] 2R_21520518_SNP [dm6]	T	A	2.618e^-4	0.822	UTR_3_PRIME CG30289 UPSTREAM CG30288
2L	4549375	2L_4549375_INS [dm3] 2L_4549375_INS [dm6]	T	TT	2.618e^-4	0.822	INTRON dp
2L	4520016	2L_4520016_SNP [dm3] 2L_4520016_SNP [dm6]	A	G	2.632e^-4	0.822	SYNONYMOUS_CODING dp	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12325672	2L_12325672_SNP [dm3] 2L_12325672_SNP [dm6]	G	A	2.633e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	15748282	3R_15748282_SNP [dm3] 3R_19922560_SNP [dm6]	T	C	2.638e^-4	0.822	UPSTREAM CR43282 INTRON CG4462
2R	17780	2R_17780_DEL [dm3] 2R_4130275_DEL [dm6]	TC	T	2.647e^-4	0.822	UPSTREAM CG17683 INTERGENIC
2R	8925322	2R_8925322_SNP [dm3] 2R_13037817_SNP [dm6]	C	A	2.654e^-4	0.822	INTERGENIC
X	13253040	X_13253040_SNP [dm3] X_13359007_SNP [dm6]	T	C	2.662e^-4	0.822	UPSTREAM Syt12 INTERGENIC
3R	17652268	3R_17652268_SNP [dm3] 3R_21826546_SNP [dm6]	A	C	2.666e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	23289034	3R_23289034_SNP [dm3] 3R_27463312_SNP [dm6]	C	T	2.669e^-4	0.822	UPSTREAM CG13978 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19133617	3R_19133617_SNP [dm3] 3R_23307895_SNP [dm6]	T	A	2.673e^-4	0.822	INTRON pnt	TF binding site mE1_TFBS_inv
2L	4502560	2L_4502560_SNP [dm3] 2L_4502560_SNP [dm6]	G	C	2.679e^-4	0.822	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3518467	3L_3518467_SNP [dm3] 3L_3518467_SNP [dm6]	C	G	2.681e^-4	0.822	INTRON Eip63E
X	4685968	X_4685968_SNP [dm3] X_4791935_SNP [dm6]	C	G	2.683e^-4	0.822	INTERGENIC
2L	6405045	2L_6405045_SNP [dm3] 2L_6405045_SNP [dm6]	C	T	2.685e^-4	0.822	INTRON CG42368
3R	23992187	3R_23992187_SNP [dm3] 3R_28166465_SNP [dm6]	A	G	2.709e^-4	0.822	INTRON CG34354
3L	486953	3L_486953_SNP [dm3] 3L_486953_SNP [dm6]	T	C	2.712e^-4	0.822	INTRON klar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	701734	3L_701734_SNP [dm3] 3L_701734_SNP [dm6]	A	G	2.725e^-4	0.822	INTERGENIC
3R	14543660	3R_14543660_SNP [dm3] 3R_18717938_SNP [dm6]	A	G	2.727e^-4	0.822	UTR_3_PRIME VAChT INTRON Cha
2R	17612093	2R_17612093_INS [dm3] 2R_21724588_INS [dm6]	T	TTAT	2.730e^-4	0.822	DOWNSTREAM LBR INTERGENIC
X	17231529	X_17231529_SNP [dm3] X_17337496_SNP [dm6]	T	C	2.733e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	2260325	3L_2260325_SNP [dm3] 3L_2260325_SNP [dm6]	G	A	2.736e^-4	0.822	SYNONYMOUS_CODING oxt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	11655879	2L_11655879_SNP [dm3] 2L_11655879_SNP [dm6]	T	C	2.737e^-4	0.822	INTERGENIC
2R	18712161	2R_18712161_SNP [dm3] 2R_22824638_SNP [dm6]	C	T	2.738e^-4	0.822	SYNONYMOUS_CODING CG42284 UPSTREAM CG30274 & 1 other
3R	25814100	3R_25814100_SNP [dm3] 3R_29988378_SNP [dm6]	A	T	2.739e^-4	0.822	SYNONYMOUS_CODING CG7896	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	1024649	3L_1024649_SNP [dm3] 3L_1024649_SNP [dm6]	A	G	2.739e^-4	0.822	SYNONYMOUS_CODING trio	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	17202114	2R_17202114_SNP [dm3] 2R_21314609_SNP [dm6]	T	A	2.742e^-4	0.822	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15818261	3L_15818261_SNP [dm3] 3L_15825161_SNP [dm6]	G	A	2.744e^-4	0.822	UPSTREAM Dcp2 INTRON Dcp2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	473158	2R_473158_INS [dm3] 2R_4585653_INS [dm6]	T	TCCCGCTGCTCTCA...	2.747e^-4	0.822	INTERGENIC
2L	8137567	2L_8137567_SNP [dm3] 2L_8137567_SNP [dm6]	G	A	2.750e^-4	0.822	SYNONYMOUS_CODING CG8552 UTR_5_PRIME CG8552	TF binding site mE1_TFBS_cad
2R	473131	2R_473131_SNP [dm3] 2R_4585626_SNP [dm6]	C	G	2.750e^-4	0.822	INTERGENIC
2R	12275321	2R_12275321_SNP [dm3] 2R_16387816_SNP [dm6]	A	T	2.756e^-4	0.822	INTRON Sema-2b
2R	9078171	2R_9078171_DEL [dm3] 2R_13190666_DEL [dm6]	ACAGA	A	2.757e^-4	0.822	UPSTREAM seq & 2 others INTRON Kdm4B	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	17943046	2L_17943046_SNP [dm3] 2L_17943046_SNP [dm6]	C	A	2.757e^-4	0.822	INTERGENIC
2R	18975687	2R_18975687_SNP [dm3] 2R_23088164_SNP [dm6]	C	T	2.763e^-4	0.822	UTR_3_PRIME CG13538
2R	18975963	2R_18975963_SNP [dm3] 2R_23088440_SNP [dm6]	G	C	2.763e^-4	0.822	DOWNSTREAM CG13538 INTERGENIC
2L	10423107	2L_10423107_SNP [dm3] 2L_10423107_SNP [dm6]	G	A	2.764e^-4	0.822	UPSTREAM CG5168 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	4502078	2L_4502078_SNP [dm3] 2L_4502078_SNP [dm6]	G	A	2.767e^-4	0.822	INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	24768415	3R_24768415_SNP [dm3] 3R_28942693_SNP [dm6]	C	T	2.780e^-4	0.822	INTRON CG14521	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	3439014	X_3439014_DEL [dm3] X_3544981_DEL [dm6]	TT	T	2.786e^-4	0.822	DOWNSTREAM CR34335 INTRON CG32791
3L	17736436	3L_17736436_SNP [dm3] 3L_17743336_SNP [dm6]	G	A	2.789e^-4	0.822	DOWNSTREAM CG7460 INTRON Ccn
3R	9691768	3R_9691768_DEL [dm3] 3R_13866046_DEL [dm6]	TA	T	2.798e^-4	0.822	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	18032910	3R_18032910_SNP [dm3] 3R_22207188_SNP [dm6]	A	T	2.801e^-4	0.822	INTRON SKIP & 1 other
X	8275218	X_8275218_SNP [dm3] X_8381185_SNP [dm6]	G	A	2.806e^-4	0.822	INTERGENIC
3R	19041070	3R_19041070_SNP [dm3] 3R_23215348_SNP [dm6]	T	A	2.807e^-4	0.822	UPSTREAM cnc INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3R	9162951	3R_9162951_DEL [dm3] 3R_13337229_DEL [dm6]	ACTCGTGTA	A	2.817e^-4	0.822	INTERGENIC
2R	3614746	2R_3614746_SNP [dm3] 2R_7727241_SNP [dm6]	T	A	2.820e^-4	0.822	UPSTREAM CG18812 INTRON CG18812
X	11771116	X_11771116_SNP [dm3] X_11877083_SNP [dm6]	T	C	2.820e^-4	0.822	UTR_5_PRIME CG10352 DOWNSTREAM CG10353
3R	18393481	3R_18393481_DEL [dm3] 3R_22567759_DEL [dm6]	ATCGTAGATC	A	2.822e^-4	0.822	INTERGENIC
2R	13784668	2R_13784668_SNP [dm3] 2R_17897163_SNP [dm6]	A	G	2.832e^-4	0.822	INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	681811	3L_681811_SNP [dm3] 3L_681811_SNP [dm6]	T	G	2.841e^-4	0.822	INTRON CG3386	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12275465	2R_12275465_SNP [dm3] 2R_16387960_SNP [dm6]	A	C	2.842e^-4	0.822	INTRON Sema-2b
2L	12302537	2L_12302537_SNP [dm3] 2L_12302537_SNP [dm6]	G	C	2.844e^-4	0.822	INTRON aret
2L	16747793	2L_16747793_SNP [dm3] 2L_16747793_SNP [dm6]	A	T	2.847e^-4	0.822	UTR_3_PRIME CG17912 INTRON CG17912
2L	4657379	2L_4657379_SNP [dm3] 2L_4657379_SNP [dm6]	A	G	2.848e^-4	0.822	INTERGENIC
X	10185759	X_10185759_SNP [dm3] X_10291726_SNP [dm6]	A	G	2.849e^-4	0.822	INTRON alpha-Man-I
X	10186084	X_10186084_SNP [dm3] X_10292051_SNP [dm6]	T	C	2.849e^-4	0.822	INTRON alpha-Man-I
2L	12302495	2L_12302495_SNP [dm3] 2L_12302495_SNP [dm6]	A	G	2.860e^-4	0.822	INTRON aret
2L	11884121	2L_11884121_SNP [dm3] 2L_11884121_SNP [dm6]	C	T	2.867e^-4	0.822	INTRON Pde1c
3R	25816726	3R_25816726_SNP [dm3] 3R_29991004_SNP [dm6]	C	T	2.875e^-4	0.822	DOWNSTREAM Acph-1 & 1 other INTERGENIC
2R	9921614	2R_9921614_SNP [dm3] 2R_14034109_SNP [dm6]	C	T	2.885e^-4	0.822	INTRON mam
3L	2835279	3L_2835279_SNP [dm3] 3L_2835279_SNP [dm6]	A	T	2.887e^-4	0.822	INTRON CG43444
2R	12275287	2R_12275287_SNP [dm3] 2R_16387782_SNP [dm6]	C	T	2.889e^-4	0.822	INTRON Sema-2b
2R	11960485	2R_11960485_DEL [dm3] 2R_16072980_DEL [dm6]	ATA	A	2.899e^-4	0.822	INTERGENIC
3L	9190126	3L_9190126_DEL [dm3] 3L_9197026_DEL [dm6]	TT	T	2.904e^-4	0.822	INTERGENIC
2L	10769104	2L_10769104_SNP [dm3] 2L_10769104_SNP [dm6]	G	A	2.919e^-4	0.822	SYNONYMOUS_CODING CG6724	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	449295	2R_449295_SNP [dm3] 2R_4561790_SNP [dm6]	A	G	2.922e^-4	0.822	INTRON Stlk
3R	6646112	3R_6646112_SNP [dm3] 3R_10820390_SNP [dm6]	C	T	2.927e^-4	0.822	INTERGENIC
3R	20616570	3R_20616570_INS [dm3] 3R_24790848_INS [dm6]	G	GGTAGTTGCCCTTCGATGAT...	2.929e^-4	0.822	UPSTREAM CG13634 INTRON Ets96B	TF binding site BDTNP1_TFBS_sna
2L	12016088	2L_12016088_SNP [dm3] 2L_12016088_SNP [dm6]	T	C	2.929e^-4	0.822	SYNONYMOUS_CODING CG6734
2L	7945282	2L_7945282_SNP [dm3] 2L_7945282_SNP [dm6]	T	A	2.947e^-4	0.822	INTRON Snoo
2L	18031186	2L_18031186_SNP [dm3] 2L_18031186_SNP [dm6]	C	A	2.947e^-4	0.822	INTRON rdo
3L	1467433	3L_1467433_SNP [dm3] 3L_1467433_SNP [dm6]	G	A	2.949e^-4	0.822	UTR_3_PRIME rho INTRON Ptp61F	TF binding site mE1_TFBS_cad
3L	2660554	3L_2660554_SNP [dm3] 3L_2660554_SNP [dm6]	C	T	2.951e^-4	0.822	SYNONYMOUS_CODING CG33233 UTR_3_PRIME CG33233 INTRON Fife
3R	2734555	3R_2734555_SNP [dm3] 3R_6908833_SNP [dm6]	T	G	2.955e^-4	0.822	INTRON Antp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	12679906	3L_12679906_SNP [dm3] 3L_12686806_SNP [dm6]	C	T	2.964e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	8322064	3L_8322064_SNP [dm3] 3L_8328964_SNP [dm6]	A	G	2.966e^-4	0.822	DOWNSTREAM CG34461 INTRON CG34462	TF binding site mE1_TFBS_ttk
2L	18461397	2L_18461397_SNP [dm3] 2L_18461397_SNP [dm6]	C	G	2.974e^-4	0.822	INTRON let-7-C
2L	10562410	2L_10562410_SNP [dm3] 2L_10562410_SNP [dm6]	C	A	2.976e^-4	0.822	INTRON Trim9
3L	10534076	3L_10534076_SNP [dm3] 3L_10540976_SNP [dm6]	T	C	2.976e^-4	0.822	INTRON A2bp1
2L	12488318	2L_12488318_INS [dm3] 2L_12488318_INS [dm6]	AA	TTGTACGCTTGGT...	2.984e^-4	0.822	INTRON bun	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	8623356	3R_8623356_SNP [dm3] 3R_12797634_SNP [dm6]	T	C	2.987e^-4	0.822	INTERGENIC
3R	19133608	3R_19133608_SNP [dm3] 3R_23307886_SNP [dm6]	T	C	2.998e^-4	0.822	INTRON pnt	TF binding site mE1_TFBS_inv
3R	19041003	3R_19041003_SNP [dm3] 3R_23215281_SNP [dm6]	T	A	3.011e^-4	0.822	UPSTREAM cnc INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2L	12015994	2L_12015994_SNP [dm3] 2L_12015994_SNP [dm6]	G	T	3.012e^-4	0.822	NON_SYNONYMOUS_CODING CG6734
2R	14049570	2R_14049570_SNP [dm3] 2R_18162065_SNP [dm6]	C	T	3.014e^-4	0.822	SYNONYMOUS_CODING CG10915
2R	10843181	2R_10843181_SNP [dm3] 2R_14955676_SNP [dm6]	C	T	3.016e^-4	0.822	INTRON aPKC	TF binding site mE1_TFBS_HSA
2R	473149	2R_473149_DEL [dm3] 2R_4585644_DEL [dm6]	TC	T	3.019e^-4	0.822	INTERGENIC
2R	473153	2R_473153_INS [dm3] 2R_4585648_INS [dm6]	T	TCCGGGTCG	3.019e^-4	0.822	INTERGENIC
2R	473155	2R_473155_SNP [dm3] 2R_4585650_SNP [dm6]	G	C	3.019e^-4	0.822	INTERGENIC
2R	11960573	2R_11960573_SNP [dm3] 2R_16073068_SNP [dm6]	G	C	3.020e^-4	0.822	INTERGENIC
X	8914632	X_8914632_SNP [dm3] X_9020599_SNP [dm6]	T	A	3.026e^-4	0.822	INTRON CR43836 & 1 other
2R	473156	2R_473156_SNP [dm3] 2R_4585651_SNP [dm6]	A	C	3.027e^-4	0.822	INTERGENIC
2L	9280115	2L_9280115_SNP [dm3] 2L_9280115_SNP [dm6]	A	T	3.028e^-4	0.822	INTRON Ggamma30A
2R	1527057	2R_1527057_SNP [dm3] 2R_5639552_SNP [dm6]	C	G	3.029e^-4	0.822	INTERGENIC
2L	855323	2L_855323_SNP [dm3] 2L_855323_SNP [dm6]	G	A	3.032e^-4	0.822	UPSTREAM CG13949 DOWNSTREAM kraken INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	4352401	3R_4352401_SNP [dm3] 3R_8526679_SNP [dm6]	T	A	3.032e^-4	0.822	DOWNSTREAM CG31259 INTERGENIC
2L	116679	2L_116679_SNP [dm3] 2L_116679_SNP [dm6]	A	G	3.038e^-4	0.822	UPSTREAM CG13694 DOWNSTREAM CG4822 INTRON CG11455	transposable element FlyBase
2L	17860343	2L_17860343_SNP [dm3] 2L_17860343_SNP [dm6]	C	T	3.040e^-4	0.822	INTRON CadN2
X	5047145	X_5047145_SNP [dm3] X_5153112_SNP [dm6]	G	A	3.044e^-4	0.822	INTRON rg & 1 other
3R	14677850	3R_14677850_SNP [dm3] 3R_18852128_SNP [dm6]	C	T	3.044e^-4	0.822	UPSTREAM CR45633 & 1 other INTERGENIC
3L	4526380	3L_4526380_SNP [dm3] 3L_4526380_SNP [dm6]	T	C	3.046e^-4	0.822	INTRON Tie
2R	10511761	2R_10511761_SNP [dm3] 2R_14624256_SNP [dm6]	A	C	3.050e^-4	0.822	DOWNSTREAM snoRNA:Me28S-A992 & 3 others INTRON Uhg5 EXON snoRNA:Or-CD4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	18975781	2R_18975781_SNP [dm3] 2R_23088258_SNP [dm6]	C	T	3.060e^-4	0.823	DOWNSTREAM CG13538 INTERGENIC
3L	17320782	3L_17320782_SNP [dm3] 3L_17327682_SNP [dm6]	C	G	3.071e^-4	0.823	DOWNSTREAM Or74a INTERGENIC
2L	16210930	2L_16210930_INS [dm3] 2L_16210930_INS [dm6]	C	CTTGGATGAGACTGGC...	3.078e^-4	0.823	UPSTREAM CG31819 INTERGENIC
2L	10423035	2L_10423035_SNP [dm3] 2L_10423035_SNP [dm6]	G	A	3.079e^-4	0.823	UPSTREAM CG5168 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	9766578	2R_9766578_SNP [dm3] 2R_13879073_SNP [dm6]	T	C	3.090e^-4	0.823	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7420251	2R_7420251_SNP [dm3] 2R_11532746_SNP [dm6]	A	G	3.093e^-4	0.823	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	13910595	2L_13910595_SNP [dm3] 2L_13910595_SNP [dm6]	T	C	3.096e^-4	0.823	SYNONYMOUS_CODING Ance-2	TF binding site mE1_TFBS_cad
3R	19563690	3R_19563690_SNP [dm3] 3R_23737968_SNP [dm6]	T	C	3.106e^-4	0.823	INTRON Hmgcr
2R	14265489	2R_14265489_DEL [dm3] 2R_18377984_DEL [dm6]	CATA	C	3.109e^-4	0.823	INTRON CR42736	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	13093896	3L_13093896_SNP [dm3] 3L_13100796_SNP [dm6]	A	G	3.113e^-4	0.823	DOWNSTREAM CR44554 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11923036	3L_11923036_SNP [dm3] 3L_11929936_SNP [dm6]	G	T	3.131e^-4	0.823	INTRON CG44837 & 1 other	TF binding site mE1_TFBS_cad
3L	6068265	3L_6068265_SNP [dm3] 3L_6075165_SNP [dm6]	G	A	3.135e^-4	0.823	UTR_5_PRIME CG13295 UPSTREAM CG6610	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	22270866	3R_22270866_SNP [dm3] 3R_26445144_SNP [dm6]	C	A	3.135e^-4	0.823	INTRON tx
X	10185762	X_10185762_SNP [dm3] X_10291729_SNP [dm6]	G	C	3.135e^-4	0.823	INTRON alpha-Man-I
2R	4588582	2R_4588582_SNP [dm3] 2R_8701077_SNP [dm6]	G	A	3.137e^-4	0.823	SYNONYMOUS_CODING CG8584 UPSTREAM CG12376	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	11205726	X_11205726_SNP [dm3] X_11311693_SNP [dm6]	T	A	3.139e^-4	0.823	UPSTREAM Ir10a INTERGENIC
X	17734306	X_17734306_SNP [dm3] X_17840273_SNP [dm6]	G	A	3.140e^-4	0.823	SYNONYMOUS_CODING CG6398	TF binding site mE1_TFBS_HSA
2L	19775660	2L_19775660_SNP [dm3] 2L_19775660_SNP [dm6]	G	A	3.141e^-4	0.823	UTR_3_PRIME CdGAPr DOWNSTREAM CdGAPr
3L	15501773	3L_15501773_SNP [dm3] 3L_15508673_SNP [dm6]	G	A	3.145e^-4	0.823	UPSTREAM Z600 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	4505621	2L_4505621_SNP [dm3] 2L_4505621_SNP [dm6]	T	A	3.145e^-4	0.823	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	23890115	3R_23890115_SNP [dm3] 3R_28064393_SNP [dm6]	G	C	3.147e^-4	0.823	INTRON CG34362
2L	10697167	2L_10697167_SNP [dm3] 2L_10697167_SNP [dm6]	A	G	3.164e^-4	0.824	SYNONYMOUS_CODING CG7300 EXON CR44181	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2963355	3L_2963355_SNP [dm3] 3L_2963355_SNP [dm6]	C	T	3.164e^-4	0.824	SYNONYMOUS_CODING Or63a UTR_3_PRIME Or63a
3R	12216024	3R_12216024_SNP [dm3] 3R_16390302_SNP [dm6]	C	G	3.169e^-4	0.824	INTRON ss	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1176396	3L_1176396_SNP [dm3] 3L_1176396_SNP [dm6]	T	G	3.171e^-4	0.824	INTRON bab2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	5672501	X_5672501_SNP [dm3] X_5778468_SNP [dm6]	G	T	3.176e^-4	0.824	INTRON CG42699 & 1 other
3L	3021231	3L_3021231_SNP [dm3] 3L_3021231_SNP [dm6]	C	A	3.191e^-4	0.824	INTERGENIC
3L	7854478	3L_7854478_SNP [dm3] 3L_7861378_SNP [dm6]	T	C	3.191e^-4	0.824	INTRON Pdp1
3R	9162933	3R_9162933_SNP [dm3] 3R_13337211_SNP [dm6]	C	T	3.191e^-4	0.824	INTERGENIC
3L	8990271	3L_8990271_SNP [dm3] 3L_8997171_SNP [dm6]	G	A	3.192e^-4	0.824	UTR_5_PRIME smg UPSTREAM smg INTRON smg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3R	5973513	3R_5973513_DEL [dm3] 3R_10147791_DEL [dm6]	CA	C	3.193e^-4	0.824	INTRON Invadolysin
2R	401390	2R_401390_SNP [dm3] 2R_4513885_SNP [dm6]	A	G	3.210e^-4	0.824	INTERGENIC	transposable element FlyBase
3R	26918486	3R_26918486_SNP [dm3] 3R_31092764_SNP [dm6]	T	A	3.220e^-4	0.824	INTRON CG11317
3R	17372518	3R_17372518_SNP [dm3] 3R_21546796_SNP [dm6]	G	A	3.220e^-4	0.824	INTERGENIC
2R	403055	2R_403055_INS [dm3] 2R_4515550_INS [dm6]	G	GA	3.231e^-4	0.824	UTR_3_PRIME RpL38 DOWNSTREAM RpL38	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_z
2R	18068071	2R_18068071_SNP [dm3] 2R_22180566_SNP [dm6]	A	G	3.235e^-4	0.824	INTRON CG11170 & 1 other	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	9897179	2R_9897179_DEL [dm3] 2R_14009674_DEL [dm6]	AA	A	3.238e^-4	0.824	INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3R	21238254	3R_21238254_SNP [dm3] 3R_25412532_SNP [dm6]	G	T	3.239e^-4	0.824	INTRON Fur1
2L	9280160	2L_9280160_SNP [dm3] 2L_9280160_SNP [dm6]	T	A	3.239e^-4	0.824	INTRON Ggamma30A
2R	9137046	2R_9137046_SNP [dm3] 2R_13249541_SNP [dm6]	C	T	3.245e^-4	0.824	DOWNSTREAM Mp20 INTRON CG4712
2L	12302497	2L_12302497_SNP [dm3] 2L_12302497_SNP [dm6]	T	G	3.253e^-4	0.824	INTRON aret
3L	21348363	3L_21348363_DEL [dm3] 3L_21355263_DEL [dm6]	CGATTTTGAGTGACTC...	C	3.256e^-4	0.824	UTR_3_PRIME CG12971 DOWNSTREAM CG32436	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	473129	2R_473129_SNP [dm3] 2R_4585624_SNP [dm6]	A	G	3.263e^-4	0.824	INTERGENIC
3R	16835447	3R_16835447_SNP [dm3] 3R_21009725_SNP [dm6]	T	A	3.263e^-4	0.824	UTR_3_PRIME Calx INTRON Calx
3L	11119767	3L_11119767_SNP [dm3] 3L_11126667_SNP [dm6]	C	T	3.268e^-4	0.824	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	796185	3R_796185_SNP [dm3] 3R_4970463_SNP [dm6]	G	C	3.269e^-4	0.824	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	22267887	3R_22267887_SNP [dm3] 3R_26442165_SNP [dm6]	G	T	3.271e^-4	0.824	INTRON tx
3L	3283474	3L_3283474_SNP [dm3] 3L_3283474_SNP [dm6]	A	C	3.271e^-4	0.824	INTRON CG12017
3L	897184	3L_897184_SNP [dm3] 3L_897184_SNP [dm6]	A	G	3.289e^-4	0.824	NON_SYNONYMOUS_CODING CG34056 UPSTREAM CG34057
3L	469160	3L_469160_INS [dm3] 3L_469160_INS [dm6]	T	TATCCCCT	3.291e^-4	0.824	INTRON klar
2L	2182252	2L_2182252_SNP [dm3] 2L_2182252_SNP [dm6]	C	T	3.296e^-4	0.824	EXON CR43751	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13840994	2R_13840994_SNP [dm3] 2R_17953489_SNP [dm6]	G	A	3.297e^-4	0.824	INTERGENIC
3L	1173400	3L_1173400_SNP [dm3] 3L_1173400_SNP [dm6]	G	A	3.303e^-4	0.824	SYNONYMOUS_CODING bab2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18393439	3R_18393439_SNP [dm3] 3R_22567717_SNP [dm6]	T	A	3.304e^-4	0.824	INTERGENIC
2R	9922052	2R_9922052_SNP [dm3] 2R_14034547_SNP [dm6]	A	G	3.306e^-4	0.824	INTRON mam
2R	16498085	2R_16498085_SNP [dm3] 2R_20610580_SNP [dm6]	G	A	3.307e^-4	0.824	INTRON Hil
2R	458975	2R_458975_INS [dm3] 2R_4571470_INS [dm6]	C	CACGCCCGTCGCAGGCGCC...	3.313e^-4	0.824	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	14262294	2R_14262294_SNP [dm3] 2R_18374789_SNP [dm6]	G	A	3.323e^-4	0.824	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	12655617	3L_12655617_SNP [dm3] 3L_12662517_SNP [dm6]	A	T	3.325e^-4	0.824	DOWNSTREAM CR44552 INTERGENIC
3L	9896834	3L_9896834_SNP [dm3] 3L_9903734_SNP [dm6]	A	C	3.326e^-4	0.824	DOWNSTREAM nudE INTERGENIC
X	17510363	X_17510363_SNP [dm3] X_17616330_SNP [dm6]	C	G	3.327e^-4	0.824	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11676033	X_11676033_SNP [dm3] X_11782000_SNP [dm6]	C	T	3.334e^-4	0.824	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	26680176	3R_26680176_SNP [dm3] 3R_30854454_SNP [dm6]	A	T	3.340e^-4	0.824	DOWNSTREAM tll INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	537917	3L_537917_SNP [dm3] 3L_537917_SNP [dm6]	G	C	3.340e^-4	0.824	INTRON klar	TF binding site BDTNP1_TFBS_dl
2R	5657111	2R_5657111_INS [dm3] 2R_9769606_INS [dm6]	A	AA	3.351e^-4	0.825	INTRON CG1688	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	17555930	3R_17555930_SNP [dm3] 3R_21730208_SNP [dm6]	T	C	3.352e^-4	0.825	UPSTREAM CR43096 INTERGENIC
2L	7363705	2L_7363705_SNP [dm3] 2L_7363705_SNP [dm6]	G	A	3.361e^-4	0.825	UTR_5_PRIME Wnt10
3R	9162930	3R_9162930_SNP [dm3] 3R_13337208_SNP [dm6]	G	T	3.361e^-4	0.825	INTERGENIC
3R	25825882	3R_25825882_SNP [dm3] 3R_30000160_SNP [dm6]	T	G	3.369e^-4	0.825	UPSTREAM Tace DOWNSTREAM CG11504 INTRON CG34298	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	15351119	2L_15351119_SNP [dm3] 2L_15351119_SNP [dm6]	T	A	3.375e^-4	0.825	INTERGENIC
X	7222656	X_7222656_SNP [dm3] X_7328623_SNP [dm6]	C	A	3.376e^-4	0.825	UTR_3_PRIME Dok UPSTREAM CG18155 INTRON CR44357 & 1 other
3R	16954027	3R_16954027_SNP [dm3] 3R_21128305_SNP [dm6]	A	C	3.379e^-4	0.825	UPSTREAM slmb DOWNSTREAM Obp93a INTRON CG5793	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	701741	3L_701741_SNP [dm3] 3L_701741_SNP [dm6]	T	C	3.382e^-4	0.825	INTERGENIC
2R	9922168	2R_9922168_SNP [dm3] 2R_14034663_SNP [dm6]	C	T	3.397e^-4	0.827	INTRON mam
3L	7006734	3L_7006734_SNP [dm3] 3L_7013634_SNP [dm6]	G	A	3.417e^-4	0.831	UPSTREAM Mp INTRON Mp
2L	4310317	2L_4310317_SNP [dm3] 2L_4310317_SNP [dm6]	A	G	3.423e^-4	0.831	INTRON tutl
X	14784375	X_14784375_SNP [dm3] X_14890342_SNP [dm6]	C	T	3.436e^-4	0.831	INTRON Flo2 & 1 other
2L	10649337	2L_10649337_SNP [dm3] 2L_10649337_SNP [dm6]	T	C	3.446e^-4	0.831	INTRON CG17097
2R	454869	2R_454869_SNP [dm3] 2R_4567364_SNP [dm6]	A	C	3.449e^-4	0.831	INTERGENIC	transposable element FlyBase
3R	25220758	3R_25220758_SNP [dm3] 3R_29395036_SNP [dm6]	C	G	3.454e^-4	0.831	INTRON Ptp99A
2L	15126652	2L_15126652_INS [dm3] 2L_15126652_INS [dm6]	T	TTTTTTATATTTATTTTTAT...	3.454e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5702286	2L_5702286_SNP [dm3] 2L_5702286_SNP [dm6]	T	A	3.460e^-4	0.831	INTERGENIC
3L	9567598	3L_9567598_SNP [dm3] 3L_9574498_SNP [dm6]	C	T	3.463e^-4	0.831	INTRON CG42673
2R	16086046	2R_16086046_SNP [dm3] 2R_20198541_SNP [dm6]	A	G	3.464e^-4	0.831	INTERGENIC
2R	16086090	2R_16086090_SNP [dm3] 2R_20198585_SNP [dm6]	A	T	3.464e^-4	0.831	INTERGENIC
X	21849700	X_21849700_INS [dm3] X_22447864_INS [dm6]	C	CCTC	3.466e^-4	0.831	UTR_3_PRIME CG14615 DOWNSTREAM CG14621
3R	2732680	3R_2732680_SNP [dm3] 3R_6906958_SNP [dm6]	A	C	3.468e^-4	0.831	DOWNSTREAM Antp INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16648856	2L_16648856_SNP [dm3] 2L_16648856_SNP [dm6]	G	A	3.477e^-4	0.832	INTRON CG42389
3L	15823502	3L_15823502_SNP [dm3] 3L_15830402_SNP [dm6]	C	T	3.483e^-4	0.832	SYNONYMOUS_CODING dbo
3R	23438476	3R_23438476_SNP [dm3] 3R_27612754_SNP [dm6]	G	C	3.491e^-4	0.833	UPSTREAM Tusp INTRON Tusp
3L	14363697	3L_14363697_SNP [dm3] 3L_14370597_SNP [dm6]	C	T	3.504e^-4	0.834	UPSTREAM CG13481 INTERGENIC
X	17510367	X_17510367_SNP [dm3] X_17616334_SNP [dm6]	C	G	3.515e^-4	0.834	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12488322	2L_12488322_MNP [dm3] 2L_12488322_MNP [dm6]	TAT	CTG	3.518e^-4	0.834	INTRON bun	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	3784637	2L_3784637_SNP [dm3] 2L_3784637_SNP [dm6]	T	G	3.519e^-4	0.834	UPSTREAM CG31960 DOWNSTREAM bowl INTERGENIC
2R	473148	2R_473148_SNP [dm3] 2R_4585643_SNP [dm6]	T	G	3.521e^-4	0.834	INTERGENIC
2L	3267295	2L_3267295_SNP [dm3] 2L_3267295_SNP [dm6]	A	T	3.529e^-4	0.834	UPSTREAM CR44484 INTERGENIC
3R	18393492	3R_18393492_SNP [dm3] 3R_22567770_SNP [dm6]	C	A	3.532e^-4	0.834	INTERGENIC
3L	9065341	3L_9065341_DEL [dm3] 3L_9072241_DEL [dm6]	CC	C	3.534e^-4	0.834	UPSTREAM CG4942 INTRON CG4911	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18447012	3L_18447012_SNP [dm3] 3L_18453912_SNP [dm6]	C	T	3.539e^-4	0.834	INTERGENIC
2L	4500783	2L_4500783_SNP [dm3] 2L_4500783_SNP [dm6]	G	A	3.542e^-4	0.834	SYNONYMOUS_CODING dp INTRON dp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	7244952	X_7244952_SNP [dm3] X_7350919_SNP [dm6]	T	C	3.549e^-4	0.834	INTRON CR44357 & 1 other
2R	14748545	2R_14748545_SNP [dm3] 2R_18861040_SNP [dm6]	T	C	3.552e^-4	0.834	SYNONYMOUS_CODING Jheh3	TF binding site mE1_TFBS_cad
3R	15748848	3R_15748848_SNP [dm3] 3R_19923126_SNP [dm6]	A	G	3.554e^-4	0.834	SYNONYMOUS_CODING CG4462	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7471672	3L_7471672_SNP [dm3] 3L_7478572_SNP [dm6]	A	G	3.564e^-4	0.835	INTERGENIC
3R	20905536	3R_20905536_SNP [dm3] 3R_25079814_SNP [dm6]	A	C	3.568e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	2637958	3R_2637958_SNP [dm3] 3R_6812236_SNP [dm6]	A	G	3.571e^-4	0.835	INTRON CR42651	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7852525	3L_7852525_SNP [dm3] 3L_7859425_SNP [dm6]	A	T	3.579e^-4	0.835	INTRON Pdp1
2L	2578582	2L_2578582_SNP [dm3] 2L_2578582_SNP [dm6]	T	C	3.585e^-4	0.835	SYNONYMOUS_CODING Elba2 DOWNSTREAM CG3214	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4533929	2L_4533929_SNP [dm3] 2L_4533929_SNP [dm6]	G	A	3.587e^-4	0.835	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_sens
3R	14687801	3R_14687801_SNP [dm3] 3R_18862079_SNP [dm6]	G	A	3.588e^-4	0.835	INTERGENIC
2R	16086069	2R_16086069_SNP [dm3] 2R_20198564_SNP [dm6]	C	T	3.592e^-4	0.835	INTERGENIC
X	16913511	X_16913511_SNP [dm3] X_17019478_SNP [dm6]	G	A	3.596e^-4	0.835	INTRON CG45002
3R	8623402	3R_8623402_SNP [dm3] 3R_12797680_SNP [dm6]	T	A	3.607e^-4	0.836	INTERGENIC
2L	18027540	2L_18027540_SNP [dm3] 2L_18027540_SNP [dm6]	G	A	3.621e^-4	0.836	INTRON rdo
3R	25816740	3R_25816740_SNP [dm3] 3R_29991018_SNP [dm6]	G	A	3.633e^-4	0.836	DOWNSTREAM Acph-1 & 1 other INTERGENIC
3R	25204892	3R_25204892_SNP [dm3] 3R_29379170_SNP [dm6]	G	A	3.636e^-4	0.836	INTRON Ptp99A
2R	18708225	2R_18708225_SNP [dm3] 2R_22820720_SNP [dm6]	A	T	3.640e^-4	0.836	NON_SYNONYMOUS_CODING CG30271 UPSTREAM CG42284 INTRON CG30271	TF binding site mE1_TFBS_chinmo
2R	473124	2R_473124_INS [dm3] 2R_4585619_INS [dm6]	G	GGACATGGAAGTTCCTCAAG...	3.643e^-4	0.836	INTERGENIC
3L	10558282	3L_10558282_SNP [dm3] 3L_10565182_SNP [dm6]	G	A	3.649e^-4	0.836	INTRON A2bp1
3L	16731023	3L_16731023_SNP [dm3] 3L_16737923_SNP [dm6]	C	T	3.654e^-4	0.836	SYNONYMOUS_CODING CG9701	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10802814	2R_10802814_SNP [dm3] 2R_14915309_SNP [dm6]	C	T	3.656e^-4	0.836	INTRON CG10249
2R	11101445	2R_11101445_SNP [dm3] 2R_15213940_SNP [dm6]	A	G	3.661e^-4	0.836	UPSTREAM row DOWNSTREAM CG8093 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	11101448	2R_11101448_SNP [dm3] 2R_15213943_SNP [dm6]	C	G	3.661e^-4	0.836	UPSTREAM row DOWNSTREAM CG8093 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4923013	3L_4923013_SNP [dm3] 3L_4923013_SNP [dm6]	A	G	3.662e^-4	0.836	INTERGENIC
2L	10826259	2L_10826259_SNP [dm3] 2L_10826259_SNP [dm6]	C	G	3.670e^-4	0.836	INTRON Nos
2R	19828273	2R_19828273_SNP [dm3] 2R_23940750_SNP [dm6]	C	T	3.679e^-4	0.836	UPSTREAM CG3735 INTRON Tal	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23253412	3R_23253412_SNP [dm3] 3R_27427690_SNP [dm6]	A	T	3.687e^-4	0.836	INTRON side
3L	490692	3L_490692_SNP [dm3] 3L_490692_SNP [dm6]	G	A	3.688e^-4	0.836	UTR_5_PRIME klar INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	2177157	3L_2177157_SNP [dm3] 3L_2177157_SNP [dm6]	C	T	3.690e^-4	0.836	INTERGENIC
2R	438988	2R_438988_SNP [dm3] 2R_4551483_SNP [dm6]	T	A	3.692e^-4	0.836	INTRON Stlk
2R	9915155	2R_9915155_INS [dm3] 2R_14027650_INS [dm6]	A	AC	3.696e^-4	0.836	UPSTREAM CG18371 INTRON mam
X	10185763	X_10185763_SNP [dm3] X_10291730_SNP [dm6]	T	C	3.701e^-4	0.836	INTRON alpha-Man-I
3L	10383681	3L_10383681_SNP [dm3] 3L_10390581_SNP [dm6]	G	C	3.702e^-4	0.836	INTERGENIC
2R	17735728	2R_17735728_SNP [dm3] 2R_21848223_SNP [dm6]	G	A	3.705e^-4	0.836	DOWNSTREAM tRNA:CR30406 INTERGENIC
2R	472275	2R_472275_SNP [dm3] 2R_4584770_SNP [dm6]	G	T	3.706e^-4	0.836	INTERGENIC
2L	15321693	2L_15321693_SNP [dm3] 2L_15321693_SNP [dm6]	T	A	3.710e^-4	0.836	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	4400530	2L_4400530_SNP [dm3] 2L_4400530_SNP [dm6]	T	A	3.713e^-4	0.836	UPSTREAM CG33003 DOWNSTREAM l_2_k05819 INTERGENIC
3L	10174172	3L_10174172_SNP [dm3] 3L_10181072_SNP [dm6]	C	A	3.716e^-4	0.836	INTRON dpr10
3L	2439565	3L_2439565_SNP [dm3] 3L_2439565_SNP [dm6]	G	C	3.737e^-4	0.839	SYNONYMOUS_CODING CG45186 UTR_5_PRIME CG45186	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18263144	2L_18263144_SNP [dm3] 2L_18263144_SNP [dm6]	C	A	3.740e^-4	0.839	UPSTREAM CR44901 INTRON CG42750
2L	20463660	2L_20463660_SNP [dm3] 2L_20463660_SNP [dm6]	C	T	3.744e^-4	0.839	UPSTREAM CG2493 DOWNSTREAM CR44980 INTERGENIC
3R	25991325	3R_25991325_SNP [dm3] 3R_30165603_SNP [dm6]	G	A	3.768e^-4	0.839	SYNONYMOUS_CODING CG31030	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	21803883	2L_21803883_SNP [dm3] 2L_21803883_SNP [dm6]	T	G	3.770e^-4	0.839	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	15321695	2L_15321695_SNP [dm3] 2L_15321695_SNP [dm6]	C	T	3.772e^-4	0.839	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	22799279	3R_22799279_SNP [dm3] 3R_26973557_SNP [dm6]	C	T	3.774e^-4	0.839	SYNONYMOUS_CODING CG5521	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15527916	2R_15527916_SNP [dm3] 2R_19640411_SNP [dm6]	A	C	3.776e^-4	0.839	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11070205	2R_11070205_SNP [dm3] 2R_15182700_SNP [dm6]	T	C	3.779e^-4	0.839	INTRON igl
2L	10903893	2L_10903893_SNP [dm3] 2L_10903893_SNP [dm6]	G	A	3.781e^-4	0.839	EXON CR45724
3R	26676982	3R_26676982_SNP [dm3] 3R_30851260_SNP [dm6]	C	G	3.782e^-4	0.839	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3L	16731026	3L_16731026_SNP [dm3] 3L_16737926_SNP [dm6]	C	A	3.791e^-4	0.84	SYNONYMOUS_CODING CG9701	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	17876483	2L_17876483_SNP [dm3] 2L_17876483_SNP [dm6]	C	T	3.816e^-4	0.844	INTERGENIC
2L	20464368	2L_20464368_DEL [dm3] 2L_20464368_DEL [dm6]	AT	G	3.822e^-4	0.844	UPSTREAM CG2493 DOWNSTREAM CR44980 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	9922169	2R_9922169_SNP [dm3] 2R_14034664_SNP [dm6]	T	C	3.823e^-4	0.844	INTRON mam
3L	15499841	3L_15499841_SNP [dm3] 3L_15506741_SNP [dm6]	T	C	3.826e^-4	0.844	INTRON CG7841	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	6817957	2R_6817957_SNP [dm3] 2R_10930452_SNP [dm6]	G	C	3.827e^-4	0.844	INTERGENIC
3R	26874114	3R_26874114_SNP [dm3] 3R_31048392_SNP [dm6]	A	T	3.834e^-4	0.844	UPSTREAM Aph-4 INTERGENIC
3L	6068213	3L_6068213_SNP [dm3] 3L_6075113_SNP [dm6]	G	C	3.850e^-4	0.844	NON_SYNONYMOUS_CODING CG13295 UPSTREAM CG6610	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	5255685	2L_5255685_SNP [dm3] 2L_5255685_SNP [dm6]	T	A	3.854e^-4	0.844	INTRON tkv	TF binding site mE1_TFBS_cad
2R	18454258	2R_18454258_DEL [dm3] 2R_22566753_DEL [dm6]	AAC	A	3.857e^-4	0.844	INTRON dnr1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5208452	X_5208452_SNP [dm3] X_5314419_SNP [dm6]	C	T	3.859e^-4	0.844	SYNONYMOUS_CODING CG4198 DOWNSTREAM CG15930	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	473122	2R_473122_SNP [dm3] 2R_4585617_SNP [dm6]	C	G	3.862e^-4	0.844	INTERGENIC
X	12577188	X_12577188_SNP [dm3] X_12683155_SNP [dm6]	C	T	3.863e^-4	0.844	DOWNSTREAM Tis11 INTERGENIC
3R	24752563	3R_24752563_SNP [dm3] 3R_28926841_SNP [dm6]	C	T	3.875e^-4	0.846	SYNONYMOUS_CODING CG14521
2L	11884146	2L_11884146_SNP [dm3] 2L_11884146_SNP [dm6]	T	A	3.898e^-4	0.846	INTRON Pde1c
3L	8548199	3L_8548199_SNP [dm3] 3L_8555099_SNP [dm6]	A	T	3.905e^-4	0.846	INTRON rhea	TF binding site BDTNP1_TFBS_twi
2R	8516182	2R_8516182_SNP [dm3] 2R_12628677_SNP [dm6]	A	G	3.907e^-4	0.846	DOWNSTREAM muskelin & 1 other INTERGENIC
3R	17555940	3R_17555940_SNP [dm3] 3R_21730218_SNP [dm6]	C	T	3.910e^-4	0.846	UPSTREAM CR43096 INTERGENIC
X	7481992	X_7481992_SNP [dm3] X_7587959_SNP [dm6]	G	A	3.915e^-4	0.846	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	14262297	2R_14262297_SNP [dm3] 2R_18374792_SNP [dm6]	T	C	3.916e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	7583612	X_7583612_SNP [dm3] X_7689579_SNP [dm6]	T	G	3.917e^-4	0.846	SYNONYMOUS_CODING CHES-1-like	TF binding site mE1_TFBS_chinmo
3L	466776	3L_466776_SNP [dm3] 3L_466776_SNP [dm6]	A	G	3.918e^-4	0.846	INTRON klar	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11330547	3L_11330547_SNP [dm3] 3L_11337447_SNP [dm6]	G	A	3.926e^-4	0.846	INTERGENIC	TF binding site mE1_TFBS_sens
2L	15126648	2L_15126648_SNP [dm3] 2L_15126648_SNP [dm6]	A	T	3.934e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	15351096	2L_15351096_SNP [dm3] 2L_15351096_SNP [dm6]	T	C	3.940e^-4	0.846	INTERGENIC
X	16613564	X_16613564_SNP [dm3] X_16719531_SNP [dm6]	A	T	3.942e^-4	0.846	INTRON CG34325	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	18588818	2R_18588818_SNP [dm3] 2R_22701313_SNP [dm6]	G	A	3.953e^-4	0.846	UPSTREAM robo DOWNSTREAM CG30259 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_kn
2L	17856345	2L_17856345_SNP [dm3] 2L_17856345_SNP [dm6]	G	A	3.957e^-4	0.846	INTRON CadN2	TF binding site mE1_TFBS_HSA
3L	15765383	3L_15765383_SNP [dm3] 3L_15772283_SNP [dm6]	G	A	3.958e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15364340	2L_15364340_SNP [dm3] 2L_15364340_SNP [dm6]	T	C	3.970e^-4	0.846	INTERGENIC
2L	21312699	2L_21312699_SNP [dm3] 2L_21312699_SNP [dm6]	A	T	3.975e^-4	0.846	INTRON crc
3R	24129687	3R_24129687_SNP [dm3] 3R_28303965_SNP [dm6]	A	G	3.979e^-4	0.846	SYNONYMOUS_CODING CG12516
3L	19824527	3L_19824527_SNP [dm3] 3L_19831427_SNP [dm6]	T	G	3.991e^-4	0.846	UTR_3_PRIME trc DOWNSTREAM Deaf1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	15183283	3R_15183283_DEL [dm3] 3R_19357561_DEL [dm6]	AAA	A	3.992e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc
2L	4534106	2L_4534106_SNP [dm3] 2L_4534106_SNP [dm6]	G	T	3.993e^-4	0.846	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_sens
2R	19648117	2R_19648117_SNP [dm3] 2R_23760594_SNP [dm6]	G	T	3.994e^-4	0.846	INTRON CG9850
2L	17893596	2L_17893596_SNP [dm3] 2L_17893596_SNP [dm6]	C	A	4.005e^-4	0.846	UPSTREAM CR43420 INTERGENIC
X	13878129	X_13878129_SNP [dm3] X_13984096_SNP [dm6]	A	C	4.018e^-4	0.846	INTRON mamo
3L	2833477	3L_2833477_SNP [dm3] 3L_2833477_SNP [dm6]	A	G	4.020e^-4	0.846	INTRON CG43444
3L	7423007	3L_7423007_SNP [dm3] 3L_7429907_SNP [dm6]	T	C	4.023e^-4	0.846	INTRON CG42458	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2R	466627	2R_466627_SNP [dm3] 2R_4579122_SNP [dm6]	G	A	4.027e^-4	0.846	INTERGENIC
3L	9896979	3L_9896979_SNP [dm3] 3L_9903879_SNP [dm6]	A	C	4.044e^-4	0.846	DOWNSTREAM nudE INTERGENIC
2R	8925197	2R_8925197_SNP [dm3] 2R_13037692_SNP [dm6]	A	T	4.045e^-4	0.846	INTERGENIC
3L	3778962	3L_3778962_SNP [dm3] 3L_3778962_SNP [dm6]	T	C	4.055e^-4	0.846	INTRON CG32264
2L	11984276	2L_11984276_SNP [dm3] 2L_11984276_SNP [dm6]	C	T	4.068e^-4	0.846	DOWNSTREAM CG6686 INTRON CG16965
X	17510358	X_17510358_SNP [dm3] X_17616325_SNP [dm6]	A	G	4.081e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7111439	3L_7111439_SNP [dm3] 3L_7118339_SNP [dm6]	C	T	4.085e^-4	0.846	SYNONYMOUS_CODING form3	TF binding site mE1_TFBS_chinmo
2L	14085585	2L_14085585_SNP [dm3] 2L_14085585_SNP [dm6]	A	T	4.085e^-4	0.846	INTRON nAChRalpha5
X	9085253	X_9085253_SNP [dm3] X_9191220_SNP [dm6]	G	T	4.097e^-4	0.846	UPSTREAM CG12115 & 1 other INTERGENIC
2L	10806516	2L_10806516_SNP [dm3] 2L_10806516_SNP [dm6]	C	A	4.098e^-4	0.846	SYNONYMOUS_CODING Nos UTR_3_PRIME Nos	TF binding site mE1_TFBS_chinmo
2L	13046561	2L_13046561_INS [dm3] 2L_13046561_INS [dm6]	A	AA	4.102e^-4	0.846	INTRON CG9932
2L	19377247	2L_19377247_SNP [dm3] 2L_19377247_SNP [dm6]	C	A	4.117e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	6745040	2L_6745040_SNP [dm3] 2L_6745040_SNP [dm6]	T	G	4.120e^-4	0.846	SYNONYMOUS_CODING CG31910 INTRON CG11221 EXON snoRNA:Me28S-G2743	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10615345	2L_10615345_SNP [dm3] 2L_10615345_SNP [dm6]	C	A	4.123e^-4	0.846	INTRON Trim9
2R	8826655	2R_8826655_SNP [dm3] 2R_12939150_SNP [dm6]	C	T	4.126e^-4	0.846	SYNONYMOUS_CODING Sans UPSTREAM CG30487	TF binding site mE1_TFBS_chinmo
3R	4339836	3R_4339836_SNP [dm3] 3R_8514114_SNP [dm6]	G	T	4.127e^-4	0.846	INTERGENIC
3L	4519298	3L_4519298_SNP [dm3] 3L_4519298_SNP [dm6]	A	T	4.133e^-4	0.846	INTRON Tie
3R	18218563	3R_18218563_SNP [dm3] 3R_22392841_SNP [dm6]	C	G	4.137e^-4	0.846	SYNONYMOUS_CODING CG13857 DOWNSTREAM CG7059	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	11183726	2L_11183726_SNP [dm3] 2L_11183726_SNP [dm6]	A	T	4.143e^-4	0.846	INTRON Ca-beta
3R	19041076	3R_19041076_INS [dm3] 3R_23215354_INS [dm6]	T	TAT	4.144e^-4	0.846	UPSTREAM cnc INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2R	456502	2R_456502_SNP [dm3] 2R_4568997_SNP [dm6]	A	T	4.144e^-4	0.846	INTERGENIC	transposable element FlyBase
X	22326665	X_22326665_SNP [dm3] X_22924829_SNP [dm6]	G	C	4.148e^-4	0.846	INTERGENIC	transposable element FlyBase
X	18719451	X_18719451_SNP [dm3] X_18825418_SNP [dm6]	G	C	4.153e^-4	0.846	SYNONYMOUS_CODING CG42450	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	455155	2R_455155_SNP [dm3] 2R_4567650_SNP [dm6]	T	C	4.157e^-4	0.846	INTERGENIC	transposable element FlyBase
X	17233760	X_17233760_SNP [dm3] X_17339727_SNP [dm6]	G	T	4.159e^-4	0.846	INTERGENIC
3L	7510818	3L_7510818_SNP [dm3] 3L_7517718_SNP [dm6]	G	A	4.160e^-4	0.846	DOWNSTREAM CG7546 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	3490927	2L_3490927_SNP [dm3] 2L_3490927_SNP [dm6]	C	A	4.161e^-4	0.846	UTR_5_PRIME CG15414
3R	20906759	3R_20906759_SNP [dm3] 3R_25081037_SNP [dm6]	A	T	4.163e^-4	0.846	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	463605	2R_463605_SNP [dm3] 2R_4576100_SNP [dm6]	T	A	4.166e^-4	0.846	INTERGENIC
2R	18279287	2R_18279287_SNP [dm3] 2R_22391782_SNP [dm6]	T	C	4.178e^-4	0.846	SYNONYMOUS_CODING CG13506	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	20878095	X_20878095_SNP [dm3] X_21007068_SNP [dm6]	T	C	4.191e^-4	0.846	INTERGENIC
2L	20474163	2L_20474163_SNP [dm3] 2L_20474163_SNP [dm6]	C	T	4.200e^-4	0.846	UPSTREAM CG43233 INTRON CR44980
X	19272757	X_19272757_SNP [dm3] X_19378724_SNP [dm6]	G	A	4.201e^-4	0.846	INTRON kek5
2L	20857352	2L_20857352_SNP [dm3] 2L_20857352_SNP [dm6]	T	C	4.206e^-4	0.846	SYNONYMOUS_CODING CG14400 DOWNSTREAM twit	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10132771	2L_10132771_SNP [dm3] 2L_10132771_SNP [dm6]	A	G	4.210e^-4	0.846	INTRON CG44153
2R	12275241	2R_12275241_SNP [dm3] 2R_16387736_SNP [dm6]	A	G	4.211e^-4	0.846	INTRON Sema-2b
3L	13949147	3L_13949147_SNP [dm3] 3L_13956047_SNP [dm6]	T	A	4.213e^-4	0.846	INTRON CG32137
3L	2131091	3L_2131091_SNP [dm3] 3L_2131091_SNP [dm6]	T	G	4.222e^-4	0.846	SYNONYMOUS_CODING zormin	TF binding site mE1_TFBS_cad
2L	19374856	2L_19374856_SNP [dm3] 2L_19374856_SNP [dm6]	C	G	4.223e^-4	0.846	INTERGENIC
X	21946828	X_21946828_SNP [dm3] X_22544992_SNP [dm6]	A	G	4.228e^-4	0.846	UPSTREAM CG17599 INTERGENIC
X	10120740	X_10120740_INS [dm3] X_10226707_INS [dm6]	T	TG	4.229e^-4	0.846	UPSTREAM CG34408 INTRON CG34408	TF binding site BDTNP1_TFBS_twi
3L	3281430	3L_3281430_SNP [dm3] 3L_3281430_SNP [dm6]	G	A	4.230e^-4	0.846	INTRON CG12017
3R	19040567	3R_19040567_SNP [dm3] 3R_23214845_SNP [dm6]	A	G	4.240e^-4	0.846	UPSTREAM cnc INTRON cnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_Trl
3R	24706749	3R_24706749_SNP [dm3] 3R_28881027_SNP [dm6]	G	A	4.253e^-4	0.846	SYNONYMOUS_CODING CG14527 UPSTREAM CG14523 INTRON CG33203
2R	17202788	2R_17202788_SNP [dm3] 2R_21315283_SNP [dm6]	C	A	4.259e^-4	0.846	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9121467	2R_9121467_SNP [dm3] 2R_13233962_SNP [dm6]	G	A	4.265e^-4	0.846	SYNONYMOUS_CODING CG4670	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	19157663	2L_19157663_SNP [dm3] 2L_19157663_SNP [dm6]	G	A	4.277e^-4	0.846	UPSTREAM brat DOWNSTREAM CR44977 INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	4699281	X_4699281_DEL [dm3] X_4805248_DEL [dm6]	CGTTGAGCA	C	4.295e^-4	0.846	UPSTREAM CG2861 DOWNSTREAM CR45516 INTERGENIC
X	5672413	X_5672413_SNP [dm3] X_5778380_SNP [dm6]	G	A	4.299e^-4	0.846	SYNONYMOUS_CODING CG3108 INTRON CG42699
2L	7057117	2L_7057117_SNP [dm3] 2L_7057117_SNP [dm6]	C	T	4.302e^-4	0.846	UTR_5_PRIME Mnn1 INTRON Mnn1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
X	16617022	X_16617022_INS [dm3] X_16722989_INS [dm6]	C	CCATTTCTGCAACTC...	4.304e^-4	0.846	INTRON CG32572	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15898275	2R_15898275_SNP [dm3] 2R_20010770_SNP [dm6]	T	A	4.308e^-4	0.846	INTERGENIC
3R	23276698	3R_23276698_SNP [dm3] 3R_27450976_SNP [dm6]	G	A	4.314e^-4	0.846	INTERGENIC
3L	19911174	3L_19911174_SNP [dm3] 3L_19918074_SNP [dm6]	A	G	4.315e^-4	0.846	UTR_3_PRIME Rpn1 DOWNSTREAM Su_z_12
2L	180019	2L_180019_INS [dm3] 2L_180019_INS [dm6]	C	CCAAC	4.315e^-4	0.846	INTRON spen	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2L	11616654	2L_11616654_SNP [dm3] 2L_11616654_SNP [dm6]	A	T	4.317e^-4	0.846	INTRON kek2
2L	18429035	2L_18429035_SNP [dm3] 2L_18429035_SNP [dm6]	G	T	4.334e^-4	0.846	INTERGENIC
3L	9044524	3L_9044524_SNP [dm3] 3L_9051424_SNP [dm6]	T	C	4.338e^-4	0.846	UTR_5_PRIME Argk INTRON Argk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9803634	2L_9803634_SNP [dm3] 2L_9803634_SNP [dm6]	C	T	4.345e^-4	0.846	INTRON nAChRalpha6
3L	4881754	3L_4881754_SNP [dm3] 3L_4881754_SNP [dm6]	T	C	4.350e^-4	0.846	INTRON CG17150
3L	6429390	3L_6429390_SNP [dm3] 3L_6436290_SNP [dm6]	T	C	4.355e^-4	0.846	INTRON CG42747	TF binding site mE1_TFBS_cad
2R	16012675	2R_16012675_SNP [dm3] 2R_20125170_SNP [dm6]	G	T	4.362e^-4	0.846	INTERGENIC	TF binding site mE1_TFBS_inv
2R	17204000	2R_17204000_SNP [dm3] 2R_21316495_SNP [dm6]	C	T	4.373e^-4	0.846	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	17204015	2R_17204015_SNP [dm3] 2R_21316510_SNP [dm6]	C	G	4.373e^-4	0.846	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	26877831	3R_26877831_SNP [dm3] 3R_31052109_SNP [dm6]	G	T	4.374e^-4	0.846	SYNONYMOUS_CODING Aph-4 UPSTREAM mir-4948 DOWNSTREAM l_3_03670	TF binding site mE1_TFBS_cad
2L	16021249	2L_16021249_SNP [dm3] 2L_16021249_SNP [dm6]	C	T	4.376e^-4	0.846	INTRON beat-Ic
2R	7026997	2R_7026997_SNP [dm3] 2R_11139492_SNP [dm6]	A	G	4.377e^-4	0.846	UTR_3_PRIME CG13229 DOWNSTREAM CG13229 & 1 other
X	17231781	X_17231781_SNP [dm3] X_17337748_SNP [dm6]	T	G	4.394e^-4	0.846	INTERGENIC
3L	10487534	3L_10487534_SNP [dm3] 3L_10494434_SNP [dm6]	C	A	4.395e^-4	0.846	INTRON A2bp1
3L	6075578	3L_6075578_DEL [dm3] 3L_6082478_DEL [dm6]	TT	T	4.400e^-4	0.846	UTR_3_PRIME CG6619 UPSTREAM CG13293 DOWNSTREAM CG6619	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	1551404	3L_1551404_SNP [dm3] 3L_1551404_SNP [dm6]	G	A	4.401e^-4	0.846	INTRON Cct1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13460376	2L_13460376_SNP [dm3] 2L_13460376_SNP [dm6]	C	A	4.402e^-4	0.846	DOWNSTREAM CG42810 INTRON CG42784	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	853398	2L_853398_SNP [dm3] 2L_853398_SNP [dm6]	T	A	4.405e^-4	0.846	UPSTREAM CG4291 INTRON kraken	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	853401	2L_853401_SNP [dm3] 2L_853401_SNP [dm6]	T	C	4.405e^-4	0.846	UPSTREAM CG4291 INTRON kraken	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10186282	X_10186282_SNP [dm3] X_10292249_SNP [dm6]	A	T	4.414e^-4	0.846	INTRON alpha-Man-I	TF binding site mE1_TFBS_inv
3L	8651641	3L_8651641_SNP [dm3] 3L_8658541_SNP [dm6]	T	C	4.415e^-4	0.846	INTERGENIC
3L	1320893	3L_1320893_DEL [dm3] 3L_1320893_DEL [dm6]	AA	A	4.415e^-4	0.846	UPSTREAM Myo61F DOWNSTREAM CG9184 INTRON Myo61F
3R	3625637	3R_3625637_SNP [dm3] 3R_7799915_SNP [dm6]	G	A	4.415e^-4	0.846	SYNONYMOUS_CODING CG3014
3R	14677020	3R_14677020_SNP [dm3] 3R_18851298_SNP [dm6]	T	C	4.418e^-4	0.846	UPSTREAM CR45633 DOWNSTREAM CG31226 INTERGENIC
2L	1494295	2L_1494295_SNP [dm3] 2L_1494295_SNP [dm6]	G	A	4.419e^-4	0.846	SYNONYMOUS_CODING CG33128 DOWNSTREAM CG31928	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	21960643	2L_21960643_SNP [dm3] 2L_21960643_SNP [dm6]	G	C	4.421e^-4	0.846	UPSTREAM CR44804 INTERGENIC
3L	6542208	3L_6542208_SNP [dm3] 3L_6549108_SNP [dm6]	T	A	4.421e^-4	0.846	UTR_3_PRIME sfl
3L	3285091	3L_3285091_SNP [dm3] 3L_3285091_SNP [dm6]	A	G	4.426e^-4	0.846	INTRON CG12017
3L	9383285	3L_9383285_SNP [dm3] 3L_9390185_SNP [dm6]	T	A	4.432e^-4	0.846	INTRON CG4080	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16170049	3R_16170049_SNP [dm3] 3R_20344327_SNP [dm6]	C	T	4.432e^-4	0.846	DOWNSTREAM Ir92a INTERGENIC
3L	5246522	3L_5246522_SNP [dm3] 3L_5253422_SNP [dm6]	G	C	4.437e^-4	0.846	INTRON shep
2R	18027372	2R_18027372_SNP [dm3] 2R_22139867_SNP [dm6]	C	T	4.438e^-4	0.846	UPSTREAM gom DOWNSTREAM CG11269 INTRON a
3L	7851272	3L_7851272_SNP [dm3] 3L_7858172_SNP [dm6]	A	C	4.438e^-4	0.846	INTRON Pdp1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8684424	3R_8684424_SNP [dm3] 3R_12858702_SNP [dm6]	A	G	4.442e^-4	0.846	INTRON CG10126
3R	5806070	3R_5806070_SNP [dm3] 3R_9980348_SNP [dm6]	T	A	4.443e^-4	0.846	INTRON Glut4EF
2R	4639048	2R_4639048_SNP [dm3] 2R_8751543_SNP [dm6]	A	C	4.443e^-4	0.846	INTRON CG8740	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2L	17860388	2L_17860388_SNP [dm3] 2L_17860388_SNP [dm6]	T	G	4.448e^-4	0.846	INTRON CadN2
X	20878348	X_20878348_SNP [dm3] X_21007321_SNP [dm6]	G	C	4.453e^-4	0.846	INTERGENIC
2L	21795694	2L_21795694_DEL [dm3] 2L_21795694_DEL [dm6]	ATA	A	4.454e^-4	0.846	UPSTREAM CG31612 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
3L	700362	3L_700362_SNP [dm3] 3L_700362_SNP [dm6]	A	C	4.456e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_kn mE1_TFBS_zfh1
2L	18016557	2L_18016557_SNP [dm3] 2L_18016557_SNP [dm6]	G	A	4.457e^-4	0.846	INTRON rdo	TF binding site mE1_TFBS_sbb
2L	16604161	2L_16604161_SNP [dm3] 2L_16604161_SNP [dm6]	C	G	4.458e^-4	0.846	UTR_5_PRIME CG42389 INTRON CG42389
3L	2260192	3L_2260192_SNP [dm3] 3L_2260192_SNP [dm6]	A	C	4.460e^-4	0.846	NON_SYNONYMOUS_CODING oxt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17937025	2R_17937025_SNP [dm3] 2R_22049520_SNP [dm6]	G	A	4.464e^-4	0.846	INTERGENIC
3L	7854381	3L_7854381_SNP [dm3] 3L_7861281_SNP [dm6]	G	A	4.467e^-4	0.846	INTRON Pdp1
3R	25002934	3R_25002934_SNP [dm3] 3R_29177212_SNP [dm6]	C	A	4.480e^-4	0.846	INTRON CG14509
X	16559137	X_16559137_DEL [dm3] X_16665104_DEL [dm6]	ATAT	G	4.487e^-4	0.846	UPSTREAM CG15865 INTRON r
3R	22769505	3R_22769505_DEL [dm3] 3R_26943783_DEL [dm6]	CAATAC	C	4.487e^-4	0.846	INTRON sda
3L	7854337	3L_7854337_SNP [dm3] 3L_7861237_SNP [dm6]	T	A	4.491e^-4	0.846	INTRON Pdp1
2R	14072727	2R_14072727_SNP [dm3] 2R_18185222_SNP [dm6]	G	C	4.491e^-4	0.846	NON_SYNONYMOUS_CODING CG33958
X	14216413	X_14216413_SNP [dm3] X_14322380_SNP [dm6]	A	C	4.499e^-4	0.846	UTR_5_PRIME dpr8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18393503	3R_18393503_SNP [dm3] 3R_22567781_SNP [dm6]	T	A	4.501e^-4	0.846	INTERGENIC
3R	19907414	3R_19907414_SNP [dm3] 3R_24081692_SNP [dm6]	T	G	4.504e^-4	0.846	INTRON 4EHP
X	4784911	X_4784911_SNP [dm3] X_4890878_SNP [dm6]	T	G	4.505e^-4	0.846	INTRON CG42594
3L	2787710	3L_2787710_SNP [dm3] 3L_2787710_SNP [dm6]	C	T	4.507e^-4	0.846	UTR_3_PRIME CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4656914	3L_4656914_INS [dm3] 3L_4656914_INS [dm6]	C	CACATCCGCACCGCACCTT...	4.509e^-4	0.846	INTRON axo
X	14844868	X_14844868_SNP [dm3] X_14950835_SNP [dm6]	T	G	4.528e^-4	0.846	UTR_5_PRIME pdgy UPSTREAM pdgy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	24082952	3R_24082952_SNP [dm3] 3R_28257230_SNP [dm6]	C	A	4.532e^-4	0.846	INTERGENIC
X	16614927	X_16614927_SNP [dm3] X_16720894_SNP [dm6]	A	G	4.539e^-4	0.846	UPSTREAM CG32572 INTRON CG34325
3L	17020153	3L_17020153_SNP [dm3] 3L_17027053_SNP [dm6]	T	C	4.541e^-4	0.846	UTR_3_PRIME Fit2 UPSTREAM CG7730	TF binding site mE1_TFBS_cad

By genomic position
Variant impact
Gene name

Nuclear_Depth_Cov phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results