DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.558e^-11)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.01815

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2149 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	8274947	X_8274947_SNP [dm3] X_8380914_SNP [dm6]	T	C	2.166e^-7	0.406	INTERGENIC
2R	12275645	2R_12275645_SNP [dm3] 2R_16388140_SNP [dm6]	C	T	1.948e^-6	0.582	INTRON Sema-2b
X	7588311	X_7588311_SNP [dm3] X_7694278_SNP [dm6]	A	C	2.785e^-6	0.582	INTRON CHES-1-like	TF binding site mE1_TFBS_Trl
X	7588190	X_7588190_SNP [dm3] X_7694157_SNP [dm6]	T	G	2.833e^-6	0.582	INTRON CHES-1-like	TF binding site mE1_TFBS_Trl
2L	5403099	2L_5403099_SNP [dm3] 2L_5403099_SNP [dm6]	A	T	3.137e^-6	0.582	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	5403108	2L_5403108_SNP [dm3] 2L_5403108_SNP [dm6]	C	A	3.137e^-6	0.582	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
X	6124327	X_6124327_SNP [dm3] X_6230294_SNP [dm6]	C	T	3.905e^-6	0.582	SYNONYMOUS_CODING CG14446
3R	2578562	3R_2578562_SNP [dm3] 3R_6752840_SNP [dm6]	G	C	4.229e^-6	0.582	DOWNSTREAM zen INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	7588115	X_7588115_SNP [dm3] X_7694082_SNP [dm6]	T	G	4.679e^-6	0.582	INTRON CHES-1-like	TF binding site mE1_TFBS_Trl
2L	4389738	2L_4389738_SNP [dm3] 2L_4389738_SNP [dm6]	C	T	5.358e^-6	0.582	INTRON Tps1	TF binding site mE1_TFBS_cad
2L	18463818	2L_18463818_SNP [dm3] 2L_18463818_SNP [dm6]	T	G	5.649e^-6	0.582	INTRON let-7-C
2L	4811089	2L_4811089_SNP [dm3] 2L_4811089_SNP [dm6]	T	A	5.846e^-6	0.582	DOWNSTREAM CR45297 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
X	7588116	X_7588116_SNP [dm3] X_7694083_SNP [dm6]	G	T	5.927e^-6	0.582	INTRON CHES-1-like	TF binding site mE1_TFBS_Trl
2L	10422256	2L_10422256_SNP [dm3] 2L_10422256_SNP [dm6]	G	A	6.272e^-6	0.582	SYNONYMOUS_CODING pie	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	14742959	X_14742959_SNP [dm3] X_14848926_SNP [dm6]	G	C	6.286e^-6	0.582	UPSTREAM CG9522 INTRON Flo2
2L	5403133	2L_5403133_SNP [dm3] 2L_5403133_SNP [dm6]	A	G	6.528e^-6	0.582	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	16509209	3L_16509209_DEL [dm3] 3L_16516109_DEL [dm6]	TT	A	6.873e^-6	0.582	INTRON CG43373
X	7588455	X_7588455_SNP [dm3] X_7694422_SNP [dm6]	A	G	7.473e^-6	0.582	INTRON CHES-1-like	TF binding site mE1_TFBS_Trl
2L	10728823	2L_10728823_SNP [dm3] 2L_10728823_SNP [dm6]	G	T	7.700e^-6	0.582	UPSTREAM CG6443 DOWNSTREAM CG6431 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4811131	2L_4811131_SNP [dm3] 2L_4811131_SNP [dm6]	G	C	7.909e^-6	0.582	DOWNSTREAM CR45297 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	4811217	2L_4811217_SNP [dm3] 2L_4811217_SNP [dm6]	G	A	8.202e^-6	0.582	DOWNSTREAM CR45297 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	4811136	2L_4811136_SNP [dm3] 2L_4811136_SNP [dm6]	C	A	8.234e^-6	0.582	DOWNSTREAM CR45297 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	8514997	2R_8514997_SNP [dm3] 2R_12627492_SNP [dm6]	T	A	8.630e^-6	0.582	INTRON CG17760
X	7588066	X_7588066_SNP [dm3] X_7694033_SNP [dm6]	A	G	8.907e^-6	0.582	INTRON CHES-1-like	TF binding site mE1_TFBS_Trl
X	16083165	X_16083165_SNP [dm3] X_16189132_SNP [dm6]	C	T	8.946e^-6	0.582	INTERGENIC
2L	9282081	2L_9282081_SNP [dm3] 2L_9282081_SNP [dm6]	T	C	8.988e^-6	0.582	INTRON Ggamma30A
2L	4811238	2L_4811238_SNP [dm3] 2L_4811238_SNP [dm6]	T	C	9.018e^-6	0.582	DOWNSTREAM CR45297 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	8516159	2R_8516159_SNP [dm3] 2R_12628654_SNP [dm6]	T	C	9.070e^-6	0.582	DOWNSTREAM muskelin & 1 other INTERGENIC
3R	9382844	3R_9382844_SNP [dm3] 3R_13557122_SNP [dm6]	C	T	1.009e^-5	0.582	INTERGENIC
X	21948257	X_21948257_SNP [dm3] X_22546421_SNP [dm6]	T	C	1.085e^-5	0.582	UPSTREAM CG17601 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	8488811	2R_8488811_SNP [dm3] 2R_12601306_SNP [dm6]	G	A	1.121e^-5	0.582	INTRON Amph
2L	10915109	2L_10915109_SNP [dm3] 2L_10915109_SNP [dm6]	T	G	1.161e^-5	0.582	INTERGENIC
X	7590624	X_7590624_SNP [dm3] X_7696591_SNP [dm6]	T	C	1.206e^-5	0.582	UTR_5_PRIME CHES-1-like INTRON CHES-1-like	TF binding site BDTNP1_TFBS_dl
X	8391847	X_8391847_SNP [dm3] X_8497814_SNP [dm6]	A	G	1.238e^-5	0.582	INTRON CG33181	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18269237	2L_18269237_SNP [dm3] 2L_18269237_SNP [dm6]	C	T	1.310e^-5	0.582	INTRON CG42750
3R	20017323	3R_20017323_SNP [dm3] 3R_24191601_SNP [dm6]	C	T	1.409e^-5	0.582	NON_SYNONYMOUS_CODING jnj
X	8391841	X_8391841_SNP [dm3] X_8497808_SNP [dm6]	G	T	1.499e^-5	0.582	INTRON CG33181	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17840567	2L_17840567_SNP [dm3] 2L_17840567_SNP [dm6]	A	G	1.522e^-5	0.582	INTRON CadN2
2L	8032221	2L_8032221_SNP [dm3] 2L_8032221_SNP [dm6]	T	C	1.653e^-5	0.582	UTR_5_PRIME Cka INTRON CG7367	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_Trl
2L	6532573	2L_6532573_SNP [dm3] 2L_6532573_SNP [dm6]	C	T	1.656e^-5	0.582	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4546212	2L_4546212_SNP [dm3] 2L_4546212_SNP [dm6]	G	C	1.689e^-5	0.582	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	2093355	X_2093355_SNP [dm3] X_2199322_SNP [dm6]	A	C	1.741e^-5	0.582	INTRON Mct1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18456100	3R_18456100_SNP [dm3] 3R_22630378_SNP [dm6]	C	T	1.792e^-5	0.582	SYNONYMOUS_CODING loco INTRON loco EXON CR43474	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	6532596	2L_6532596_SNP [dm3] 2L_6532596_SNP [dm6]	C	G	1.855e^-5	0.582	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3754682	3L_3754682_SNP [dm3] 3L_3754682_SNP [dm6]	C	A	1.944e^-5	0.582	NON_SYNONYMOUS_CODING ppk27 INTRON CG32264
2L	7998792	2L_7998792_SNP [dm3] 2L_7998792_SNP [dm6]	C	T	1.944e^-5	0.582	UPSTREAM Sirup & 1 other DOWNSTREAM Wwox INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	8514687	2R_8514687_SNP [dm3] 2R_12627182_SNP [dm6]	C	A	1.945e^-5	0.582	INTRON CG17760
X	7599609	X_7599609_SNP [dm3] X_7705576_SNP [dm6]	T	A	1.958e^-5	0.582	UPSTREAM CHES-1-like INTRON CHES-1-like	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	7599611	X_7599611_SNP [dm3] X_7705578_SNP [dm6]	C	A	1.958e^-5	0.582	UPSTREAM CHES-1-like INTRON CHES-1-like	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	21946828	X_21946828_SNP [dm3] X_22544992_SNP [dm6]	A	G	1.998e^-5	0.582	UPSTREAM CG17599 INTERGENIC
X	7588194	X_7588194_SNP [dm3] X_7694161_SNP [dm6]	A	T	2.032e^-5	0.582	INTRON CHES-1-like	TF binding site mE1_TFBS_Trl
X	7587749	X_7587749_SNP [dm3] X_7693716_SNP [dm6]	T	A	2.126e^-5	0.582	INTRON CHES-1-like	TF binding site mE1_TFBS_Trl
X	7582077	X_7582077_SNP [dm3] X_7688044_SNP [dm6]	A	G	2.146e^-5	0.582	SYNONYMOUS_CODING CHES-1-like
X	9557557	X_9557557_SNP [dm3] X_9663524_SNP [dm6]	A	G	2.150e^-5	0.582	UPSTREAM CG3106 INTERGENIC
2L	17802346	2L_17802346_SNP [dm3] 2L_17802346_SNP [dm6]	G	A	2.210e^-5	0.582	SYNONYMOUS_CODING CadN2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6072117	3L_6072117_SNP [dm3] 3L_6079017_SNP [dm6]	G	A	2.291e^-5	0.582	SYNONYMOUS_CODING CG6619	TF binding site mE1_TFBS_cad
X	7500735	X_7500735_SNP [dm3] X_7606702_SNP [dm6]	C	A	2.304e^-5	0.582	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	14791044	2L_14791044_SNP [dm3] 2L_14791044_SNP [dm6]	A	T	2.310e^-5	0.582	INTERGENIC
2L	14791047	2L_14791047_DEL [dm3] 2L_14791047_DEL [dm6]	AA	A	2.310e^-5	0.582	INTERGENIC
3R	8623345	3R_8623345_SNP [dm3] 3R_12797623_SNP [dm6]	C	A	2.328e^-5	0.582	INTERGENIC
X	7599606	X_7599606_SNP [dm3] X_7705573_SNP [dm6]	G	T	2.331e^-5	0.582	UPSTREAM CHES-1-like INTRON CHES-1-like	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	13781149	3R_13781149_SNP [dm3] 3R_17955427_SNP [dm6]	A	C	2.407e^-5	0.582	INTRON cpo
2L	4530745	2L_4530745_SNP [dm3] 2L_4530745_SNP [dm6]	A	T	2.407e^-5	0.582	INTRON dp
3L	12116025	3L_12116025_SNP [dm3] 3L_12122925_SNP [dm6]	T	G	2.490e^-5	0.582	SYNONYMOUS_CODING yps	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_slp1 mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26009899	3R_26009899_SNP [dm3] 3R_30184177_SNP [dm6]	C	T	2.494e^-5	0.582	EXON CR44262
2L	6532875	2L_6532875_INS [dm3] 2L_6532875_INS [dm6]	T	TAT	2.528e^-5	0.582	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8391824	X_8391824_SNP [dm3] X_8497791_SNP [dm6]	C	T	2.539e^-5	0.582	INTRON CG33181	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	21948258	X_21948258_SNP [dm3] X_22546422_SNP [dm6]	G	A	2.577e^-5	0.582	UPSTREAM CG17601 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	4210745	3L_4210745_DEL [dm3] 3L_4210745_DEL [dm6]	AA	G	2.602e^-5	0.582	DOWNSTREAM Cpr64Ab INTRON CG43367
2L	8137567	2L_8137567_SNP [dm3] 2L_8137567_SNP [dm6]	G	A	2.692e^-5	0.582	SYNONYMOUS_CODING CG8552 UTR_5_PRIME CG8552	TF binding site mE1_TFBS_cad
2L	10493336	2L_10493336_SNP [dm3] 2L_10493336_SNP [dm6]	G	T	2.695e^-5	0.582	NON_SYNONYMOUS_CODING Myo31DF	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3098955	3L_3098955_SNP [dm3] 3L_3098955_SNP [dm6]	G	A	2.700e^-5	0.582	INTRON Cht7
2L	7998817	2L_7998817_SNP [dm3] 2L_7998817_SNP [dm6]	T	C	2.717e^-5	0.582	UPSTREAM Sirup & 1 other DOWNSTREAM Wwox INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	25315605	3R_25315605_SNP [dm3] 3R_29489883_SNP [dm6]	A	G	2.740e^-5	0.582	SYNONYMOUS_CODING CG2006 UPSTREAM CG2321 DOWNSTREAM Spase12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8513943	2R_8513943_SNP [dm3] 2R_12626438_SNP [dm6]	A	T	2.799e^-5	0.582	INTRON CG17760
X	16757986	X_16757986_SNP [dm3] X_16863953_SNP [dm6]	T	A	2.818e^-5	0.582	INTRON CG13003
X	7603955	X_7603955_SNP [dm3] X_7709922_SNP [dm6]	A	T	2.830e^-5	0.582	UPSTREAM CHES-1-like INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	8111870	2L_8111870_SNP [dm3] 2L_8111870_SNP [dm6]	T	C	2.895e^-5	0.582	UTR_3_PRIME Bsg
2R	14265480	2R_14265480_SNP [dm3] 2R_18377975_SNP [dm6]	G	A	2.899e^-5	0.582	INTRON CR42736	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	9913951	2R_9913951_SNP [dm3] 2R_14026446_SNP [dm6]	T	A	2.903e^-5	0.582	INTRON mam
2L	5598741	2L_5598741_DEL [dm3] 2L_5598741_DEL [dm6]	TTAAAATCGTAGAAGT...	T	2.923e^-5	0.582	DOWNSTREAM CG18266 INTERGENIC
X	21948261	X_21948261_SNP [dm3] X_22546425_SNP [dm6]	A	C	2.924e^-5	0.582	UPSTREAM CG17601 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	9117317	2R_9117317_SNP [dm3] 2R_13229812_SNP [dm6]	A	T	2.960e^-5	0.582	SYNONYMOUS_CODING Pex13 UPSTREAM fsd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
X	8391611	X_8391611_SNP [dm3] X_8497578_SNP [dm6]	C	T	2.982e^-5	0.582	INTRON CG33181	TF binding site mE1_TFBS_HSA
X	2095969	X_2095969_SNP [dm3] X_2201936_SNP [dm6]	G	T	2.991e^-5	0.582	NON_SYNONYMOUS_CODING CG18031 UPSTREAM CR43637 INTRON Mct1
X	7593768	X_7593768_SNP [dm3] X_7699735_SNP [dm6]	G	A	2.992e^-5	0.582	INTRON CHES-1-like
X	8391791	X_8391791_SNP [dm3] X_8497758_SNP [dm6]	G	T	3.010e^-5	0.582	INTRON CG33181	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14265513	2R_14265513_SNP [dm3] 2R_18378008_SNP [dm6]	C	T	3.016e^-5	0.582	INTRON CR42736	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	23992187	3R_23992187_SNP [dm3] 3R_28166465_SNP [dm6]	A	G	3.043e^-5	0.582	INTRON CG34354
2L	15998203	2L_15998203_SNP [dm3] 2L_15998203_SNP [dm6]	A	C	3.056e^-5	0.582	INTERGENIC
X	7587630	X_7587630_INS [dm3] X_7693597_INS [dm6]	A	AA	3.071e^-5	0.582	INTRON CHES-1-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	7591008	X_7591008_SNP [dm3] X_7696975_SNP [dm6]	G	T	3.076e^-5	0.582	UPSTREAM CHES-1-like INTRON CHES-1-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2L	4502833	2L_4502833_SNP [dm3] 2L_4502833_SNP [dm6]	T	A	3.082e^-5	0.582	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	7588288	X_7588288_SNP [dm3] X_7694255_SNP [dm6]	G	A	3.097e^-5	0.582	INTRON CHES-1-like	TF binding site mE1_TFBS_Trl
2L	4534022	2L_4534022_SNP [dm3] 2L_4534022_SNP [dm6]	C	A	3.107e^-5	0.582	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_sens
2R	18943066	2R_18943066_SNP [dm3] 2R_23055543_SNP [dm6]	T	C	3.114e^-5	0.582	UTR_5_PRIME CG44252	TF binding site BDTNP1_TFBS_twi
3L	6068385	3L_6068385_SNP [dm3] 3L_6075285_SNP [dm6]	G	C	3.162e^-5	0.582	UPSTREAM CG6610 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
2L	17840400	2L_17840400_SNP [dm3] 2L_17840400_SNP [dm6]	T	A	3.178e^-5	0.582	INTRON CadN2
X	16083076	X_16083076_SNP [dm3] X_16189043_SNP [dm6]	C	T	3.183e^-5	0.582	INTERGENIC
X	16083077	X_16083077_SNP [dm3] X_16189044_SNP [dm6]	A	T	3.183e^-5	0.582	INTERGENIC
2L	7568151	2L_7568151_DEL [dm3] 2L_7568151_DEL [dm6]	AC	A	3.207e^-5	0.582	INTRON RapGAP1
X	7583345	X_7583345_SNP [dm3] X_7689312_SNP [dm6]	A	G	3.236e^-5	0.582	SYNONYMOUS_CODING CHES-1-like	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	8913557	2R_8913557_SNP [dm3] 2R_13026052_SNP [dm6]	T	C	3.249e^-5	0.582	INTERGENIC
X	16083080	X_16083080_SNP [dm3] X_16189047_SNP [dm6]	G	T	3.256e^-5	0.582	INTERGENIC
X	16083082	X_16083082_DEL [dm3] X_16189049_DEL [dm6]	TC	A	3.256e^-5	0.582	INTERGENIC
3R	25042173	3R_25042173_SNP [dm3] 3R_29216451_SNP [dm6]	T	C	3.410e^-5	0.598	UPSTREAM mir-996 DOWNSTREAM mir-279 INTRON CR31044 EXON CR31044	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2L	4503437	2L_4503437_SNP [dm3] 2L_4503437_SNP [dm6]	G	A	3.414e^-5	0.598	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	447616	3L_447616_SNP [dm3] 3L_447616_SNP [dm6]	A	G	3.564e^-5	0.619	INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	6563344	X_6563344_SNP [dm3] X_6669311_SNP [dm6]	A	T	3.596e^-5	0.619	UTR_3_PRIME CG3198	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	7587744	X_7587744_SNP [dm3] X_7693711_SNP [dm6]	G	C	3.849e^-5	0.651	INTRON CHES-1-like	TF binding site mE1_TFBS_Trl
X	21946848	X_21946848_SNP [dm3] X_22545012_SNP [dm6]	G	A	3.856e^-5	0.651	UPSTREAM CG17599 INTERGENIC
3L	7852135	3L_7852135_SNP [dm3] 3L_7859035_SNP [dm6]	G	C	4.007e^-5	0.651	INTRON Pdp1
2R	14265489	2R_14265489_DEL [dm3] 2R_18377984_DEL [dm6]	CATA	C	4.011e^-5	0.651	INTRON CR42736	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	18269235	2L_18269235_SNP [dm3] 2L_18269235_SNP [dm6]	T	C	4.017e^-5	0.651	INTRON CG42750
3R	5909597	3R_5909597_SNP [dm3] 3R_10083875_SNP [dm6]	T	A	4.019e^-5	0.651	INTRON CR45054	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	12275503	2R_12275503_SNP [dm3] 2R_16387998_SNP [dm6]	A	T	4.029e^-5	0.651	INTRON Sema-2b
3R	5771339	3R_5771339_SNP [dm3] 3R_9945617_SNP [dm6]	T	A	4.121e^-5	0.655	DOWNSTREAM Glut4EF INTRON Glut4EF	TF binding site mE1_TFBS_cad
2R	13825625	2R_13825625_SNP [dm3] 2R_17938120_SNP [dm6]	T	G	4.152e^-5	0.655	INTERGENIC
2L	4811120	2L_4811120_SNP [dm3] 2L_4811120_SNP [dm6]	A	C	4.157e^-5	0.655	DOWNSTREAM CR45297 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
X	7595209	X_7595209_SNP [dm3] X_7701176_SNP [dm6]	A	T	4.288e^-5	0.665	INTRON CHES-1-like
3L	6068935	3L_6068935_SNP [dm3] 3L_6075835_SNP [dm6]	T	C	4.293e^-5	0.665	SYNONYMOUS_CODING CG6610 UPSTREAM CG13295 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	20430337	X_20430337_SNP [dm3] X_20559310_SNP [dm6]	G	C	4.375e^-5	0.669	INTRON RunxB
3L	7852205	3L_7852205_SNP [dm3] 3L_7859105_SNP [dm6]	T	A	4.427e^-5	0.669	INTRON Pdp1
3R	25294032	3R_25294032_SNP [dm3] 3R_29468310_SNP [dm6]	T	C	4.448e^-5	0.669	INTRON Ptp99A
2R	19922737	2R_19922737_SNP [dm3] 2R_24035214_SNP [dm6]	T	C	4.503e^-5	0.669	SYNONYMOUS_CODING MAN1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	27234955	3R_27234955_SNP [dm3] 3R_31409233_SNP [dm6]	G	C	4.594e^-5	0.669	INTRON Gprk2
3L	17455851	3L_17455851_SNP [dm3] 3L_17462751_SNP [dm6]	G	A	4.646e^-5	0.669	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	18272803	2L_18272803_SNP [dm3] 2L_18272803_SNP [dm6]	T	C	4.671e^-5	0.669	INTRON CG42750
X	16083085	X_16083085_SNP [dm3] X_16189052_SNP [dm6]	T	G	4.684e^-5	0.669	INTERGENIC
X	7585894	X_7585894_SNP [dm3] X_7691861_SNP [dm6]	C	A	4.690e^-5	0.669	INTRON CHES-1-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	26923909	3R_26923909_SNP [dm3] 3R_31098187_SNP [dm6]	G	A	4.754e^-5	0.669	UPSTREAM CG11317 DOWNSTREAM CG15553 INTERGENIC
X	7147085	X_7147085_INS [dm3] X_7253052_INS [dm6]	A	AT	4.806e^-5	0.669	INTRON CR44357	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2L	7614318	2L_7614318_SNP [dm3] 2L_7614318_SNP [dm6]	T	C	4.862e^-5	0.669	SPLICE_SITE_REGION CG6739 INTRON CG6739
X	19228832	X_19228832_SNP [dm3] X_19334799_SNP [dm6]	A	G	4.900e^-5	0.669	INTRON nAChRalpha7
2R	14420035	2R_14420035_SNP [dm3] 2R_18532530_SNP [dm6]	C	G	4.901e^-5	0.669	INTRON CG10924	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25301492	3R_25301492_SNP [dm3] 3R_29475770_SNP [dm6]	C	T	4.907e^-5	0.669	INTRON Ptp99A
2R	15945978	2R_15945978_SNP [dm3] 2R_20058473_SNP [dm6]	C	T	4.943e^-5	0.669	EXON CR44631	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
3L	6068967	3L_6068967_SNP [dm3] 3L_6075867_SNP [dm6]	G	A	4.983e^-5	0.669	SYNONYMOUS_CODING CG6610 UPSTREAM CG13295 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	7852125	3L_7852125_SNP [dm3] 3L_7859025_SNP [dm6]	T	C	4.986e^-5	0.669	INTRON Pdp1
2L	17802345	2L_17802345_SNP [dm3] 2L_17802345_SNP [dm6]	G	A	4.995e^-5	0.669	SYNONYMOUS_CODING CadN2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7147082	X_7147082_SNP [dm3] X_7253049_SNP [dm6]	T	A	5.039e^-5	0.67	INTRON CR44357	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
3L	4337119	3L_4337119_SNP [dm3] 3L_4337119_SNP [dm6]	C	T	5.116e^-5	0.67	INTRON Cip4
3R	13007857	3R_13007857_SNP [dm3] 3R_17182135_SNP [dm6]	T	C	5.147e^-5	0.67	INTRON Mur89F
2L	6532844	2L_6532844_SNP [dm3] 2L_6532844_SNP [dm6]	T	G	5.215e^-5	0.67	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19823403	3R_19823403_SNP [dm3] 3R_23997681_SNP [dm6]	C	T	5.276e^-5	0.67	UTR_3_PRIME KrT95D DOWNSTREAM LSm3 & 2 others
2L	5402201	2L_5402201_SNP [dm3] 2L_5402201_SNP [dm6]	A	C	5.305e^-5	0.67	INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	15826465	3R_15826465_SNP [dm3] 3R_20000743_SNP [dm6]	A	T	5.374e^-5	0.67	INTRON Hs6st	TF binding site BDTNP1_TFBS_twi
2L	7613199	2L_7613199_SNP [dm3] 2L_7613199_SNP [dm6]	A	G	5.382e^-5	0.67	INTRON CG6739
3R	8623344	3R_8623344_SNP [dm3] 3R_12797622_SNP [dm6]	T	C	5.495e^-5	0.67	INTERGENIC
X	7583408	X_7583408_SNP [dm3] X_7689375_SNP [dm6]	T	A	5.505e^-5	0.67	SYNONYMOUS_CODING CHES-1-like	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	14265447	2R_14265447_SNP [dm3] 2R_18377942_SNP [dm6]	C	A	5.518e^-5	0.67	EXON CR42736	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	9735227	X_9735227_SNP [dm3] X_9841194_SNP [dm6]	C	G	5.536e^-5	0.67	INTRON CG32698
X	7589667	X_7589667_SNP [dm3] X_7695634_SNP [dm6]	C	T	5.546e^-5	0.67	UPSTREAM CHES-1-like INTRON CHES-1-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3R	27234198	3R_27234198_SNP [dm3] 3R_31408476_SNP [dm6]	C	A	5.613e^-5	0.67	INTRON Gprk2
X	21948260	X_21948260_SNP [dm3] X_22546424_SNP [dm6]	A	T	5.620e^-5	0.67	UPSTREAM CG17601 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	14265460	2R_14265460_INS [dm3] 2R_18377955_INS [dm6]	T	ATTCGATGTAGAAA...	5.660e^-5	0.67	INTRON CR42736	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	20017162	3R_20017162_SNP [dm3] 3R_24191440_SNP [dm6]	T	C	5.661e^-5	0.67	NON_SYNONYMOUS_CODING jnj
3L	13687066	3L_13687066_SNP [dm3] 3L_13693966_SNP [dm6]	A	G	5.665e^-5	0.67	INTRON bru-3
2L	18303285	2L_18303285_SNP [dm3] 2L_18303285_SNP [dm6]	C	T	5.709e^-5	0.67	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA
2L	4811104	2L_4811104_SNP [dm3] 2L_4811104_SNP [dm6]	G	C	5.719e^-5	0.67	DOWNSTREAM CR45297 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	9598676	2L_9598676_SNP [dm3] 2L_9598676_SNP [dm6]	G	T	5.767e^-5	0.671	DOWNSTREAM CG4382 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3R	2866869	3R_2866869_INS [dm3] 3R_7041147_INS [dm6]	A	AA	5.809e^-5	0.671	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	7500737	X_7500737_SNP [dm3] X_7606704_SNP [dm6]	T	C	5.829e^-5	0.671	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	10825996	2L_10825996_SNP [dm3] 2L_10825996_SNP [dm6]	G	C	5.928e^-5	0.671	SYNONYMOUS_CODING Nos
X	8391811	X_8391811_SNP [dm3] X_8497778_SNP [dm6]	T	A	5.961e^-5	0.671	INTRON CG33181	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	8391818	X_8391818_SNP [dm3] X_8497785_SNP [dm6]	A	G	5.979e^-5	0.671	INTRON CG33181	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	8391846	X_8391846_SNP [dm3] X_8497813_SNP [dm6]	T	G	5.979e^-5	0.671	INTRON CG33181	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11244654	2L_11244654_SNP [dm3] 2L_11244654_SNP [dm6]	C	T	6.074e^-5	0.671	INTRON ab
2L	18463404	2L_18463404_SNP [dm3] 2L_18463404_SNP [dm6]	C	T	6.107e^-5	0.671	INTRON let-7-C
X	16083058	X_16083058_SNP [dm3] X_16189025_SNP [dm6]	A	C	6.127e^-5	0.671	INTERGENIC
X	18875954	X_18875954_SNP [dm3] X_18981921_SNP [dm6]	T	A	6.133e^-5	0.671	INTRON CG43759
X	7595254	X_7595254_SNP [dm3] X_7701221_SNP [dm6]	T	A	6.247e^-5	0.671	INTRON CHES-1-like
2L	9840677	2L_9840677_SNP [dm3] 2L_9840677_SNP [dm6]	T	C	6.259e^-5	0.671	INTRON nAChRalpha6
2L	10697167	2L_10697167_SNP [dm3] 2L_10697167_SNP [dm6]	A	G	6.277e^-5	0.671	SYNONYMOUS_CODING CG7300 EXON CR44181	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4546219	2L_4546219_SNP [dm3] 2L_4546219_SNP [dm6]	G	T	6.296e^-5	0.671	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7479949	2L_7479949_SNP [dm3] 2L_7479949_SNP [dm6]	C	T	6.299e^-5	0.671	SYNONYMOUS_CODING Ziz
X	21948362	X_21948362_SNP [dm3] X_22546526_SNP [dm6]	C	G	6.402e^-5	0.675	UPSTREAM CG17601 INTERGENIC	TF binding site mE1_TFBS_kn
2L	7567530	2L_7567530_SNP [dm3] 2L_7567530_SNP [dm6]	T	A	6.437e^-5	0.675	INTRON RapGAP1
2L	18248887	2L_18248887_SNP [dm3] 2L_18248887_SNP [dm6]	T	A	6.496e^-5	0.675	INTRON CG42750
2R	10247834	2R_10247834_SNP [dm3] 2R_14360329_SNP [dm6]	C	T	6.514e^-5	0.675	UPSTREAM Arc1 DOWNSTREAM CR10102 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	18463696	2L_18463696_SNP [dm3] 2L_18463696_SNP [dm6]	C	G	6.527e^-5	0.675	INTRON let-7-C
X	7585670	X_7585670_SNP [dm3] X_7691637_SNP [dm6]	A	C	6.552e^-5	0.675	INTRON CHES-1-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	18463698	2L_18463698_SNP [dm3] 2L_18463698_SNP [dm6]	A	T	6.587e^-5	0.675	INTRON let-7-C
X	7604595	X_7604595_SNP [dm3] X_7710562_SNP [dm6]	C	T	6.628e^-5	0.675	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	4520016	2L_4520016_SNP [dm3] 2L_4520016_SNP [dm6]	A	G	6.660e^-5	0.675	SYNONYMOUS_CODING dp	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1704761	2L_1704761_SNP [dm3] 2L_1704761_SNP [dm6]	C	T	6.793e^-5	0.677	UPSTREAM cpb DOWNSTREAM chinmo INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA
3L	16818114	3L_16818114_DEL [dm3] 3L_16825014_DEL [dm6]	GG	G	6.811e^-5	0.677	INTRON CG13024
3R	14550388	3R_14550388_SNP [dm3] 3R_18724666_SNP [dm6]	T	A	6.826e^-5	0.677	DOWNSTREAM CG7714 INTRON Cha
X	7500744	X_7500744_SNP [dm3] X_7606711_SNP [dm6]	T	G	6.840e^-5	0.677	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	494797	3L_494797_INS [dm3] 3L_494797_INS [dm6]	A	AA	6.861e^-5	0.677	INTRON klar
3R	20919891	3R_20919891_SNP [dm3] 3R_25094169_SNP [dm6]	C	A	6.921e^-5	0.68	UPSTREAM fd96Cb INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	14676984	3R_14676984_SNP [dm3] 3R_18851262_SNP [dm6]	C	T	7.003e^-5	0.684	UPSTREAM CR45633 DOWNSTREAM CG31226 INTERGENIC
2L	18415733	2L_18415733_SNP [dm3] 2L_18415733_SNP [dm6]	A	T	7.042e^-5	0.684	INTERGENIC
2R	18942529	2R_18942529_SNP [dm3] 2R_23055006_SNP [dm6]	T	C	7.072e^-5	0.684	UPSTREAM CG44252 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	5225654	3L_5225654_SNP [dm3] 3L_5232554_SNP [dm6]	A	T	7.150e^-5	0.688	INTRON shep
2L	17802754	2L_17802754_SNP [dm3] 2L_17802754_SNP [dm6]	G	A	7.186e^-5	0.688	INTRON CadN2
2L	15141838	2L_15141838_SNP [dm3] 2L_15141838_SNP [dm6]	G	C	7.415e^-5	0.704	INTERGENIC
2R	13825616	2R_13825616_SNP [dm3] 2R_17938111_SNP [dm6]	A	G	7.430e^-5	0.704	INTERGENIC
3R	3966045	3R_3966045_SNP [dm3] 3R_8140323_SNP [dm6]	T	A	7.493e^-5	0.706	UPSTREAM tRNA:N5:84F & 2 others DOWNSTREAM tRNA:R2:84Fc & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	16076370	2R_16076370_SNP [dm3] 2R_20188865_SNP [dm6]	C	A	7.554e^-5	0.708	INTERGENIC
X	20430305	X_20430305_SNP [dm3] X_20559278_SNP [dm6]	T	A	7.594e^-5	0.709	INTRON RunxB
2R	16812072	2R_16812072_SNP [dm3] 2R_20924567_SNP [dm6]	T	C	7.649e^-5	0.71	INTRON Rx
2R	13825629	2R_13825629_SNP [dm3] 2R_17938124_SNP [dm6]	A	G	7.734e^-5	0.71	INTERGENIC
3L	489701	3L_489701_SNP [dm3] 3L_489701_SNP [dm6]	G	A	7.755e^-5	0.71	INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	18393503	3R_18393503_SNP [dm3] 3R_22567781_SNP [dm6]	T	A	7.758e^-5	0.71	INTERGENIC
3R	22276027	3R_22276027_SNP [dm3] 3R_26450305_SNP [dm6]	T	G	7.947e^-5	0.715	SYNONYMOUS_CODING Hex-t1 UPSTREAM Hex-t2
3R	25991376	3R_25991376_SNP [dm3] 3R_30165654_SNP [dm6]	A	G	7.952e^-5	0.715	SYNONYMOUS_CODING CG31030 DOWNSTREAM CG31028	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	7614296	2L_7614296_SNP [dm3] 2L_7614296_SNP [dm6]	T	A	7.992e^-5	0.715	INTRON CG6739
3L	15884625	3L_15884625_SNP [dm3] 3L_15891525_SNP [dm6]	A	G	8.015e^-5	0.715	INTRON pHCl
3L	2379239	3L_2379239_SNP [dm3] 3L_2379239_SNP [dm6]	T	C	8.061e^-5	0.715	UTR_5_PRIME CG45186 INTRON CG45186
2L	15027784	2L_15027784_SNP [dm3] 2L_15027784_SNP [dm6]	T	A	8.155e^-5	0.715	NON_SYNONYMOUS_CODING CG33310 INTRON GABA-B-R1
3L	3099166	3L_3099166_SNP [dm3] 3L_3099166_SNP [dm6]	C	T	8.178e^-5	0.715	INTRON Cht7
2L	14601513	2L_14601513_INS [dm3] 2L_14601513_INS [dm6]	T	TG	8.180e^-5	0.715	INTRON osp	TF binding site mE1_TFBS_HSA
X	21946825	X_21946825_INS [dm3] X_22544989_INS [dm6]	G	GG	8.199e^-5	0.715	UPSTREAM CG17599 INTERGENIC
2L	6750674	2L_6750674_SNP [dm3] 2L_6750674_SNP [dm6]	A	G	8.210e^-5	0.715	INTRON CG11221
X	18910715	X_18910715_SNP [dm3] X_19016682_SNP [dm6]	A	G	8.238e^-5	0.715	INTRON CG43759
2L	4772759	2L_4772759_SNP [dm3] 2L_4772759_SNP [dm6]	T	G	8.360e^-5	0.718	INTRON CG15630
3R	23369781	3R_23369781_SNP [dm3] 3R_27544059_SNP [dm6]	G	A	8.377e^-5	0.718	UPSTREAM Gr98c DOWNSTREAM Gr98b INTERGENIC
3L	497117	3L_497117_SNP [dm3] 3L_497117_SNP [dm6]	C	G	8.452e^-5	0.718	INTRON klar
3L	9148478	3L_9148478_INS [dm3] 3L_9155378_INS [dm6]	C	CATC	8.519e^-5	0.718	INTRON Rdl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	27234938	3R_27234938_INS [dm3] 3R_31409216_INS [dm6]	T	TT	8.521e^-5	0.718	INTRON Gprk2
3R	27234962	3R_27234962_SNP [dm3] 3R_31409240_SNP [dm6]	T	C	8.521e^-5	0.718	INTRON Gprk2
X	15446081	X_15446081_SNP [dm3] X_15552048_SNP [dm6]	T	A	8.567e^-5	0.718	INTRON Ac13E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	16543776	X_16543776_INS [dm3] X_16649743_INS [dm6]	A	ACACCCATA	8.582e^-5	0.718	UTR_3_PRIME mthl1 DOWNSTREAM mthl1
X	7500732	X_7500732_SNP [dm3] X_7606699_SNP [dm6]	C	T	8.619e^-5	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	1980284	X_1980284_SNP [dm3] X_2086251_SNP [dm6]	T	C	8.769e^-5	0.718	INTRON Unc-76	TF binding site mE1_TFBS_chinmo
2R	15815381	2R_15815381_DEL [dm3] 2R_19927876_DEL [dm6]	CAACTTTTTATACTTATCCC...	C	8.793e^-5	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	14265488	2R_14265488_SNP [dm3] 2R_18377983_SNP [dm6]	T	A	8.795e^-5	0.718	INTRON CR42736	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	3963737	3R_3963737_SNP [dm3] 3R_8138015_SNP [dm6]	A	C	8.800e^-5	0.718	INTERGENIC
2L	17895434	2L_17895434_SNP [dm3] 2L_17895434_SNP [dm6]	A	G	8.820e^-5	0.718	DOWNSTREAM CR43420 INTERGENIC
2L	4388947	2L_4388947_SNP [dm3] 2L_4388947_SNP [dm6]	G	A	8.844e^-5	0.718	INTRON Tps1
2L	7392953	2L_7392953_SNP [dm3] 2L_7392953_SNP [dm6]	C	T	8.893e^-5	0.719	INTRON CG5160
3R	14676991	3R_14676991_DEL [dm3] 3R_18851269_DEL [dm6]	CG	T	9.033e^-5	0.719	UPSTREAM CR45633 DOWNSTREAM CG31226 INTERGENIC
2R	17255300	2R_17255300_SNP [dm3] 2R_21367795_SNP [dm6]	A	G	9.131e^-5	0.719	INTRON cv-2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5330266	2L_5330266_SNP [dm3] 2L_5330266_SNP [dm6]	A	C	9.140e^-5	0.719	SYNONYMOUS_CODING TotM DOWNSTREAM fusl
3R	25293145	3R_25293145_DEL [dm3] 3R_29467423_DEL [dm6]	ACA	A	9.283e^-5	0.719	INTRON Ptp99A
3R	8623356	3R_8623356_SNP [dm3] 3R_12797634_SNP [dm6]	T	C	9.298e^-5	0.719	INTERGENIC
3R	23369659	3R_23369659_SNP [dm3] 3R_27543937_SNP [dm6]	C	G	9.300e^-5	0.719	UPSTREAM Gr98c DOWNSTREAM Gr98b INTERGENIC
X	15642370	X_15642370_SNP [dm3] X_15748337_SNP [dm6]	C	T	9.301e^-5	0.719	SYNONYMOUS_CODING Tcp-1zeta UPSTREAM CG8239	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	20017195	3R_20017195_SNP [dm3] 3R_24191473_SNP [dm6]	T	C	9.303e^-5	0.719	NON_SYNONYMOUS_CODING jnj
X	7500733	X_7500733_SNP [dm3] X_7606700_SNP [dm6]	G	T	9.326e^-5	0.719	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	17542666	2L_17542666_SNP [dm3] 2L_17542666_SNP [dm6]	T	A	9.347e^-5	0.719	DOWNSTREAM CR43304 INTERGENIC
2R	16978020	2R_16978020_SNP [dm3] 2R_21090515_SNP [dm6]	T	A	9.486e^-5	0.719	NON_SYNONYMOUS_CODING Rbpn-5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	17802841	2L_17802841_SNP [dm3] 2L_17802841_SNP [dm6]	T	A	9.493e^-5	0.719	INTRON CadN2
2L	17840436	2L_17840436_SNP [dm3] 2L_17840436_SNP [dm6]	G	A	9.504e^-5	0.719	INTRON CadN2
2R	8905167	2R_8905167_INS [dm3] 2R_13017662_INS [dm6]	A	ATCA	9.527e^-5	0.719	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	10169282	2L_10169282_SNP [dm3] 2L_10169282_SNP [dm6]	G	T	9.557e^-5	0.719	INTRON CG44153
3R	19607763	3R_19607763_INS [dm3] 3R_23782041_INS [dm6]	T	TGACGAT	9.557e^-5	0.719	UTR_5_PRIME mbc UPSTREAM Nup98-96	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	16076273	2R_16076273_INS [dm3] 2R_20188768_INS [dm6]	A	ACATA	9.596e^-5	0.719	INTERGENIC
2L	7618419	2L_7618419_SNP [dm3] 2L_7618419_SNP [dm6]	C	A	9.606e^-5	0.719	INTERGENIC
3L	4656893	3L_4656893_SNP [dm3] 3L_4656893_SNP [dm6]	A	C	9.673e^-5	0.719	INTRON axo
3L	14410483	3L_14410483_SNP [dm3] 3L_14417383_SNP [dm6]	T	G	9.727e^-5	0.719	INTRON bbg
3R	9840711	3R_9840711_SNP [dm3] 3R_14014989_SNP [dm6]	G	A	9.740e^-5	0.719	INTRON rdx
2L	12320029	2L_12320029_SNP [dm3] 2L_12320029_SNP [dm6]	A	G	9.799e^-5	0.719	INTERGENIC
X	15446054	X_15446054_SNP [dm3] X_15552021_SNP [dm6]	A	G	9.801e^-5	0.719	INTRON Ac13E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	4388973	2L_4388973_SNP [dm3] 2L_4388973_SNP [dm6]	A	G	9.815e^-5	0.719	INTRON Tps1
X	7583423	X_7583423_SNP [dm3] X_7689390_SNP [dm6]	C	T	9.849e^-5	0.719	SYNONYMOUS_CODING CHES-1-like	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	9840260	2L_9840260_SNP [dm3] 2L_9840260_SNP [dm6]	C	T	9.920e^-5	0.719	INTRON nAChRalpha6
X	7588653	X_7588653_SNP [dm3] X_7694620_SNP [dm6]	T	A	9.966e^-5	0.719	INTRON CHES-1-like	TF binding site mE1_TFBS_Trl
2R	14265535	2R_14265535_SNP [dm3] 2R_18378030_SNP [dm6]	C	A	1.007e^-4	0.719	INTRON CR42736	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	9792135	2R_9792135_SNP [dm3] 2R_13904630_SNP [dm6]	C	G	1.009e^-4	0.719	NON_SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16498980	3L_16498980_SNP [dm3] 3L_16505880_SNP [dm6]	T	C	1.012e^-4	0.719	INTRON CG43373
X	7594754	X_7594754_SNP [dm3] X_7700721_SNP [dm6]	A	G	1.013e^-4	0.719	INTRON CHES-1-like
3L	2559584	3L_2559584_SNP [dm3] 3L_2559584_SNP [dm6]	T	A	1.014e^-4	0.719	INTRON msn
3R	16226604	3R_16226604_SNP [dm3] 3R_20400882_SNP [dm6]	C	T	1.015e^-4	0.719	UTR_3_PRIME Gfrl INTRON Gfrl
2L	17802842	2L_17802842_SNP [dm3] 2L_17802842_SNP [dm6]	C	T	1.029e^-4	0.719	INTRON CadN2
3R	11444453	3R_11444453_SNP [dm3] 3R_15618731_SNP [dm6]	G	T	1.031e^-4	0.719	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	18361415	3L_18361415_SNP [dm3] 3L_18368315_SNP [dm6]	C	A	1.038e^-4	0.719	INTERGENIC
3L	22903058	3L_22903058_SNP [dm3] 3L_22909958_SNP [dm6]	G	A	1.040e^-4	0.719	UPSTREAM CG12768 DOWNSTREAM CR45661 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	17253236	X_17253236_SNP [dm3] X_17359203_SNP [dm6]	T	G	1.043e^-4	0.719	INTERGENIC
X	7147097	X_7147097_SNP [dm3] X_7253064_SNP [dm6]	C	T	1.048e^-4	0.719	INTRON CR44357	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
3L	13689430	3L_13689430_SNP [dm3] 3L_13696330_SNP [dm6]	A	T	1.050e^-4	0.719	INTRON bru-3
3R	17374596	3R_17374596_SNP [dm3] 3R_21548874_SNP [dm6]	T	C	1.052e^-4	0.719	UTR_3_PRIME slou	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	7500730	X_7500730_SNP [dm3] X_7606697_SNP [dm6]	C	T	1.053e^-4	0.719	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	15814647	2R_15814647_SNP [dm3] 2R_19927142_SNP [dm6]	A	C	1.057e^-4	0.719	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	9414222	2L_9414222_SNP [dm3] 2L_9414222_SNP [dm6]	C	A	1.058e^-4	0.719	INTRON Shawl
X	20430394	X_20430394_SNP [dm3] X_20559367_SNP [dm6]	C	A	1.068e^-4	0.723	INTRON RunxB
X	16083181	X_16083181_SNP [dm3] X_16189148_SNP [dm6]	A	C	1.074e^-4	0.724	INTERGENIC
2R	11832965	2R_11832965_SNP [dm3] 2R_15945460_SNP [dm6]	C	T	1.082e^-4	0.726	UPSTREAM mir-4919 DOWNSTREAM CG30093 INTRON Cyp4aa1
3R	23992220	3R_23992220_SNP [dm3] 3R_28166498_SNP [dm6]	A	G	1.089e^-4	0.726	INTRON CG34354
2L	15027781	2L_15027781_SNP [dm3] 2L_15027781_SNP [dm6]	T	C	1.091e^-4	0.726	SYNONYMOUS_CODING CG33310 INTRON GABA-B-R1
X	7599672	X_7599672_SNP [dm3] X_7705639_SNP [dm6]	A	T	1.092e^-4	0.726	UPSTREAM CHES-1-like INTRON CHES-1-like	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	7500401	2L_7500401_SNP [dm3] 2L_7500401_SNP [dm6]	A	G	1.103e^-4	0.73	SYNONYMOUS_CODING RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	775588	2R_775588_SNP [dm3] 2R_4888083_SNP [dm6]	G	T	1.109e^-4	0.73	INTERGENIC	transposable element FlyBase
3L	4168384	3L_4168384_SNP [dm3] 3L_4168384_SNP [dm6]	A	G	1.110e^-4	0.73	UPSTREAM mas EXON CR44529	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	12320003	2L_12320003_INS [dm3] 2L_12320003_INS [dm6]	T	TT	1.120e^-4	0.731	INTERGENIC
X	11205139	X_11205139_SNP [dm3] X_11311106_SNP [dm6]	G	T	1.123e^-4	0.731	NON_SYNONYMOUS_CODING Ir10a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10423935	3L_10423935_SNP [dm3] 3L_10430835_SNP [dm6]	T	C	1.125e^-4	0.731	SYNONYMOUS_CODING Ir67b
2L	12318943	2L_12318943_SNP [dm3] 2L_12318943_SNP [dm6]	G	C	1.126e^-4	0.731	INTERGENIC
3R	25991325	3R_25991325_SNP [dm3] 3R_30165603_SNP [dm6]	G	A	1.131e^-4	0.732	SYNONYMOUS_CODING CG31030	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	18393481	3R_18393481_DEL [dm3] 3R_22567759_DEL [dm6]	ATCGTAGATC	A	1.136e^-4	0.732	INTERGENIC
3L	11870757	3L_11870757_SNP [dm3] 3L_11877657_SNP [dm6]	G	A	1.148e^-4	0.735	INTRON CG44837
X	2091975	X_2091975_SNP [dm3] X_2197942_SNP [dm6]	C	G	1.153e^-4	0.735	INTRON Mct1
X	16089019	X_16089019_SNP [dm3] X_16194986_SNP [dm6]	A	C	1.154e^-4	0.735	INTERGENIC
2L	12328958	2L_12328958_SNP [dm3] 2L_12328958_SNP [dm6]	G	A	1.157e^-4	0.735	INTERGENIC
2L	10903893	2L_10903893_SNP [dm3] 2L_10903893_SNP [dm6]	G	A	1.169e^-4	0.735	EXON CR45724
X	7599460	X_7599460_SNP [dm3] X_7705427_SNP [dm6]	G	A	1.170e^-4	0.735	UPSTREAM CHES-1-like INTRON CHES-1-like	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	7568147	2L_7568147_SNP [dm3] 2L_7568147_SNP [dm6]	G	A	1.172e^-4	0.735	INTRON RapGAP1
2L	4503259	2L_4503259_SNP [dm3] 2L_4503259_SNP [dm6]	C	T	1.174e^-4	0.735	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14791179	2L_14791179_SNP [dm3] 2L_14791179_SNP [dm6]	T	C	1.177e^-4	0.735	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	7585893	X_7585893_SNP [dm3] X_7691860_SNP [dm6]	C	A	1.179e^-4	0.735	INTRON CHES-1-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	7770443	2L_7770443_SNP [dm3] 2L_7770443_SNP [dm6]	C	G	1.183e^-4	0.735	INTRON CG7191
2L	2555560	2L_2555560_SNP [dm3] 2L_2555560_SNP [dm6]	A	C	1.188e^-4	0.735	UPSTREAM CR44113 INTERGENIC
2L	15998289	2L_15998289_SNP [dm3] 2L_15998289_SNP [dm6]	A	C	1.202e^-4	0.74	INTERGENIC
3L	14708171	3L_14708171_SNP [dm3] 3L_14715071_SNP [dm6]	C	T	1.203e^-4	0.74	INTRON ome
2L	7567720	2L_7567720_SNP [dm3] 2L_7567720_SNP [dm6]	C	G	1.207e^-4	0.74	INTRON RapGAP1
2R	15061140	2R_15061140_SNP [dm3] 2R_19173635_SNP [dm6]	C	T	1.211e^-4	0.74	SYNONYMOUS_CODING CG10737
3L	7853841	3L_7853841_SNP [dm3] 3L_7860741_SNP [dm6]	C	A	1.218e^-4	0.74	INTRON Pdp1
3R	18393492	3R_18393492_SNP [dm3] 3R_22567770_SNP [dm6]	C	A	1.222e^-4	0.74	INTERGENIC
3L	14708477	3L_14708477_SNP [dm3] 3L_14715377_SNP [dm6]	A	T	1.223e^-4	0.74	INTRON ome
2L	6532975	2L_6532975_SNP [dm3] 2L_6532975_SNP [dm6]	C	T	1.231e^-4	0.742	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11870411	3L_11870411_SNP [dm3] 3L_11877311_SNP [dm6]	C	T	1.234e^-4	0.742	INTRON CG44837
3R	4208099	3R_4208099_INS [dm3] 3R_8382377_INS [dm6]	A	AGTA	1.239e^-4	0.743	DOWNSTREAM CG45263 INTRON CG45263
X	10537875	X_10537875_SNP [dm3] X_10643842_SNP [dm6]	T	C	1.247e^-4	0.745	INTRON X11Lbeta
3L	9172557	3L_9172557_SNP [dm3] 3L_9179457_SNP [dm6]	G	A	1.259e^-4	0.747	UPSTREAM Rdl INTRON Rdl	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	18393497	3R_18393497_SNP [dm3] 3R_22567775_SNP [dm6]	T	C	1.262e^-4	0.747	INTERGENIC
2L	17117421	2L_17117421_SNP [dm3] 2L_17117421_SNP [dm6]	C	A	1.263e^-4	0.747	INTERGENIC
2L	4646582	2L_4646582_SNP [dm3] 2L_4646582_SNP [dm6]	T	C	1.269e^-4	0.748	UPSTREAM CG43798 DOWNSTREAM CG15635 INTERGENIC
3L	2646651	3L_2646651_SNP [dm3] 3L_2646651_SNP [dm6]	G	A	1.277e^-4	0.748	UTR_3_PRIME CG1143 DOWNSTREAM CG1143	TF binding site mE1_TFBS_cad
2R	19905970	2R_19905970_SNP [dm3] 2R_24018447_SNP [dm6]	A	G	1.279e^-4	0.748	SYNONYMOUS_CODING CG3121	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	22270844	3R_22270844_SNP [dm3] 3R_26445122_SNP [dm6]	A	G	1.281e^-4	0.748	INTRON tx
X	21127085	X_21127085_SNP [dm3] X_21256058_SNP [dm6]	T	A	1.284e^-4	0.748	INTRON CG32521
3L	847879	3L_847879_SNP [dm3] 3L_847879_SNP [dm6]	A	G	1.292e^-4	0.75	NON_SYNONYMOUS_CODING CG13889	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13689503	3L_13689503_SNP [dm3] 3L_13696403_SNP [dm6]	C	A	1.304e^-4	0.751	INTRON bru-3
X	7605079	X_7605079_SNP [dm3] X_7711046_SNP [dm6]	T	C	1.308e^-4	0.751	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	20430395	X_20430395_SNP [dm3] X_20559368_SNP [dm6]	T	A	1.309e^-4	0.751	INTRON RunxB
X	16254202	X_16254202_SNP [dm3] X_16360169_SNP [dm6]	C	T	1.309e^-4	0.751	INTRON Gpi1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_zfh1
3R	18393516	3R_18393516_SNP [dm3] 3R_22567794_SNP [dm6]	A	T	1.334e^-4	0.755	INTERGENIC
3R	18595277	3R_18595277_SNP [dm3] 3R_22769555_SNP [dm6]	A	T	1.334e^-4	0.755	SYNONYMOUS_CODING CG43092 UPSTREAM CG43091 DOWNSTREAM CG43093 INTRON Usp12-46 & 1 other
2R	15048423	2R_15048423_SNP [dm3] 2R_19160918_SNP [dm6]	A	T	1.338e^-4	0.755	INTRON ena
3L	2749969	3L_2749969_SNP [dm3] 3L_2749969_SNP [dm6]	G	T	1.341e^-4	0.755	INTRON Mrtf
2R	8514729	2R_8514729_SNP [dm3] 2R_12627224_SNP [dm6]	T	A	1.344e^-4	0.755	INTRON CG17760
2R	18942667	2R_18942667_SNP [dm3] 2R_23055144_SNP [dm6]	C	T	1.350e^-4	0.755	UPSTREAM CG44252 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15814566	2R_15814566_SNP [dm3] 2R_19927061_SNP [dm6]	C	T	1.351e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	4811092	2L_4811092_SNP [dm3] 2L_4811092_SNP [dm6]	C	G	1.359e^-4	0.755	DOWNSTREAM CR45297 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	15815525	2R_15815525_INS [dm3] 2R_19928020_INS [dm6]	T	TGTTGTGTGTAAAG...	1.368e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	14267563	2R_14267563_SNP [dm3] 2R_18380058_SNP [dm6]	G	C	1.381e^-4	0.755	INTERGENIC
2L	6532986	2L_6532986_SNP [dm3] 2L_6532986_SNP [dm6]	A	G	1.392e^-4	0.755	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7581642	X_7581642_SNP [dm3] X_7687609_SNP [dm6]	G	A	1.392e^-4	0.755	SYNONYMOUS_CODING CHES-1-like
3R	1160378	3R_1160378_DEL [dm3] 3R_5334656_DEL [dm6]	TCCCGATCCGGATCCT...	T	1.411e^-4	0.755	CODON_DELETION mtd UTR_5_PRIME mtd INTRON mtd
3R	23369746	3R_23369746_SNP [dm3] 3R_27544024_SNP [dm6]	A	G	1.413e^-4	0.755	UPSTREAM Gr98c DOWNSTREAM Gr98b INTERGENIC
2L	9840596	2L_9840596_SNP [dm3] 2L_9840596_SNP [dm6]	G	A	1.415e^-4	0.755	INTRON nAChRalpha6
X	7588847	X_7588847_SNP [dm3] X_7694814_SNP [dm6]	G	A	1.418e^-4	0.755	UTR_5_PRIME CHES-1-like INTRON CHES-1-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	10602102	2L_10602102_SNP [dm3] 2L_10602102_SNP [dm6]	A	T	1.421e^-4	0.755	INTRON Trim9
3L	477095	3L_477095_SNP [dm3] 3L_477095_SNP [dm6]	A	T	1.424e^-4	0.755	INTRON klar
2L	7104488	2L_7104488_SNP [dm3] 2L_7104488_SNP [dm6]	G	T	1.428e^-4	0.755	INTRON Pvf3
X	6455732	X_6455732_SNP [dm3] X_6561699_SNP [dm6]	A	G	1.429e^-4	0.755	SYNONYMOUS_CODING CG34417	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	469469	3L_469469_SNP [dm3] 3L_469469_SNP [dm6]	A	T	1.433e^-4	0.755	INTRON klar	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3546696	X_3546696_SNP [dm3] X_3652663_SNP [dm6]	A	C	1.435e^-4	0.755	INTRON AstA-R1
3R	24465602	3R_24465602_SNP [dm3] 3R_28639880_SNP [dm6]	C	A	1.435e^-4	0.755	INTERGENIC
3R	15826615	3R_15826615_SNP [dm3] 3R_20000893_SNP [dm6]	A	T	1.439e^-4	0.755	INTRON Hs6st	TF binding site BDTNP1_TFBS_twi
2R	8516389	2R_8516389_SNP [dm3] 2R_12628884_SNP [dm6]	A	G	1.450e^-4	0.755	UTR_3_PRIME muskelin DOWNSTREAM muskelin & 1 other
X	16219246	X_16219246_DEL [dm3] X_16325213_DEL [dm6]	AT	A	1.452e^-4	0.755	UPSTREAM CalpC DOWNSTREAM CG32579 INTRON CG32579
3L	10679563	3L_10679563_SNP [dm3] 3L_10686463_SNP [dm6]	C	A	1.452e^-4	0.755	INTRON simj
2R	775577	2R_775577_SNP [dm3] 2R_4888072_SNP [dm6]	G	A	1.453e^-4	0.755	INTERGENIC	transposable element FlyBase
3L	3349836	3L_3349836_SNP [dm3] 3L_3349836_SNP [dm6]	C	A	1.454e^-4	0.755	UPSTREAM kst INTRON kst	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18393493	3R_18393493_SNP [dm3] 3R_22567771_SNP [dm6]	A	T	1.462e^-4	0.755	INTERGENIC
3R	18393496	3R_18393496_SNP [dm3] 3R_22567774_SNP [dm6]	T	G	1.462e^-4	0.755	INTERGENIC
X	2095551	X_2095551_SNP [dm3] X_2201518_SNP [dm6]	G	T	1.466e^-4	0.755	DOWNSTREAM CG18031 INTRON Mct1 EXON CR43637
X	15445701	X_15445701_SNP [dm3] X_15551668_SNP [dm6]	T	G	1.467e^-4	0.755	INTRON Ac13E	TF binding site mE1_TFBS_Kr
X	10808787	X_10808787_SNP [dm3] X_10914754_SNP [dm6]	A	G	1.469e^-4	0.755	SYNONYMOUS_CODING CG43901
3L	17732462	3L_17732462_SNP [dm3] 3L_17739362_SNP [dm6]	G	A	1.475e^-4	0.755	INTRON Ccn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15123018	2L_15123018_DEL [dm3] 2L_15123018_DEL [dm6]	TT	T	1.482e^-4	0.755	INTERGENIC
3L	3754702	3L_3754702_SNP [dm3] 3L_3754702_SNP [dm6]	C	G	1.484e^-4	0.755	NON_SYNONYMOUS_CODING ppk27 INTRON CG32264
X	7588992	X_7588992_SNP [dm3] X_7694959_SNP [dm6]	T	G	1.487e^-4	0.755	UPSTREAM CHES-1-like INTRON CHES-1-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	11205726	X_11205726_SNP [dm3] X_11311693_SNP [dm6]	T	A	1.489e^-4	0.755	UPSTREAM Ir10a INTERGENIC
3R	9578169	3R_9578169_SNP [dm3] 3R_13752447_SNP [dm6]	G	C	1.490e^-4	0.755	NON_SYNONYMOUS_CODING CG34383 INTRON CG34383
X	5850051	X_5850051_SNP [dm3] X_5956018_SNP [dm6]	T	A	1.491e^-4	0.755	INTRON CG6067
3R	18393504	3R_18393504_DEL [dm3] 3R_22567782_DEL [dm6]	CC	C	1.491e^-4	0.755	INTERGENIC
X	7594927	X_7594927_SNP [dm3] X_7700894_SNP [dm6]	A	G	1.493e^-4	0.755	INTRON CHES-1-like
3R	26558847	3R_26558847_SNP [dm3] 3R_30733125_SNP [dm6]	G	A	1.498e^-4	0.755	INTERGENIC
X	7244952	X_7244952_SNP [dm3] X_7350919_SNP [dm6]	T	C	1.498e^-4	0.755	INTRON CR44357 & 1 other
3L	2559109	3L_2559109_SNP [dm3] 3L_2559109_SNP [dm6]	C	T	1.506e^-4	0.757	INTRON msn
X	10537238	X_10537238_SNP [dm3] X_10643205_SNP [dm6]	A	G	1.513e^-4	0.758	INTRON X11Lbeta
3L	3518467	3L_3518467_SNP [dm3] 3L_3518467_SNP [dm6]	C	G	1.517e^-4	0.758	INTRON Eip63E
X	6726368	X_6726368_SNP [dm3] X_6832335_SNP [dm6]	T	G	1.528e^-4	0.758	SYNONYMOUS_CODING CG12796 INTRON nonC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26874114	3R_26874114_SNP [dm3] 3R_31048392_SNP [dm6]	A	T	1.529e^-4	0.758	UPSTREAM Aph-4 INTERGENIC
2L	6532329	2L_6532329_SNP [dm3] 2L_6532329_SNP [dm6]	T	C	1.533e^-4	0.758	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10836840	2R_10836840_SNP [dm3] 2R_14949335_SNP [dm6]	T	G	1.534e^-4	0.758	INTRON aPKC
3R	8623402	3R_8623402_SNP [dm3] 3R_12797680_SNP [dm6]	T	A	1.536e^-4	0.758	INTERGENIC
3R	13589888	3R_13589888_SNP [dm3] 3R_17764166_SNP [dm6]	G	T	1.540e^-4	0.758	UPSTREAM TyrR INTERGENIC
2R	9769960	2R_9769960_SNP [dm3] 2R_13882455_SNP [dm6]	G	A	1.547e^-4	0.759	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad
2R	14265454	2R_14265454_SNP [dm3] 2R_18377949_SNP [dm6]	T	C	1.555e^-4	0.761	SPLICE_SITE_REGION CR42736 INTRON CR42736	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	17895741	2L_17895741_SNP [dm3] 2L_17895741_SNP [dm6]	C	T	1.562e^-4	0.763	INTERGENIC
2L	7567731	2L_7567731_SNP [dm3] 2L_7567731_SNP [dm6]	C	T	1.589e^-4	0.768	INTRON RapGAP1
2R	18714658	2R_18714658_SNP [dm3] 2R_22827135_SNP [dm6]	A	T	1.596e^-4	0.768	INTRON CG42284 & 1 other
2L	4772740	2L_4772740_SNP [dm3] 2L_4772740_SNP [dm6]	T	C	1.604e^-4	0.768	INTRON CG15630
2L	7567887	2L_7567887_SNP [dm3] 2L_7567887_SNP [dm6]	A	G	1.607e^-4	0.768	INTRON RapGAP1
2R	8515089	2R_8515089_SNP [dm3] 2R_12627584_SNP [dm6]	T	C	1.614e^-4	0.768	INTRON CG17760
2R	20012341	2R_20012341_SNP [dm3] 2R_24124818_SNP [dm6]	G	T	1.614e^-4	0.768	SPLICE_SITE_REGION CG43775 & 2 others UPSTREAM CG43777 INTRON CG43775 & 2 others	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6773104	2L_6773104_SNP [dm3] 2L_6773104_SNP [dm6]	C	A	1.615e^-4	0.768	UPSTREAM CG11321 & 1 other INTERGENIC
2R	4533286	2R_4533286_SNP [dm3] 2R_8645781_SNP [dm6]	A	C	1.620e^-4	0.768	INTERGENIC
3L	447150	3L_447150_SNP [dm3] 3L_447150_SNP [dm6]	A	C	1.625e^-4	0.768	INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	23887442	3R_23887442_SNP [dm3] 3R_28061720_SNP [dm6]	T	C	1.631e^-4	0.768	INTRON CG34362
3R	23887446	3R_23887446_SNP [dm3] 3R_28061724_SNP [dm6]	T	C	1.631e^-4	0.768	INTRON CG34362
2L	15160417	2L_15160417_SNP [dm3] 2L_15160417_SNP [dm6]	A	T	1.632e^-4	0.768	UPSTREAM CR44770 & 1 other INTERGENIC
X	12815489	X_12815489_SNP [dm3] X_12921456_SNP [dm6]	A	G	1.642e^-4	0.768	INTRON fne
X	7605577	X_7605577_SNP [dm3] X_7711544_SNP [dm6]	T	A	1.644e^-4	0.768	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	6575816	2L_6575816_SNP [dm3] 2L_6575816_SNP [dm6]	C	T	1.647e^-4	0.768	INTRON CG11319
X	16543809	X_16543809_SNP [dm3] X_16649776_SNP [dm6]	T	C	1.650e^-4	0.768	UTR_3_PRIME mthl1 DOWNSTREAM mthl1
X	7147167	X_7147167_SNP [dm3] X_7253134_SNP [dm6]	A	G	1.655e^-4	0.768	INTRON CR44357	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2R	11690681	2R_11690681_SNP [dm3] 2R_15803176_SNP [dm6]	G	T	1.658e^-4	0.768	INTRON Zasp52 & 1 other
X	21948240	X_21948240_SNP [dm3] X_22546404_SNP [dm6]	A	T	1.659e^-4	0.768	UPSTREAM CG17601 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	15027766	2L_15027766_SNP [dm3] 2L_15027766_SNP [dm6]	T	C	1.662e^-4	0.768	SYNONYMOUS_CODING CG33310 INTRON GABA-B-R1
3R	14699502	3R_14699502_SNP [dm3] 3R_18873780_SNP [dm6]	A	G	1.664e^-4	0.768	INTERGENIC
3L	2657716	3L_2657716_SNP [dm3] 3L_2657716_SNP [dm6]	T	C	1.671e^-4	0.768	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_chinmo
2L	6750649	2L_6750649_SNP [dm3] 2L_6750649_SNP [dm6]	T	G	1.673e^-4	0.768	INTRON CG11221
X	1980286	X_1980286_SNP [dm3] X_2086253_SNP [dm6]	G	T	1.676e^-4	0.768	INTRON Unc-76	TF binding site mE1_TFBS_chinmo
2L	12443130	2L_12443130_SNP [dm3] 2L_12443130_SNP [dm6]	G	A	1.680e^-4	0.768	SYNONYMOUS_CODING Oatp33Ea
3L	17617981	3L_17617981_SNP [dm3] 3L_17624881_SNP [dm6]	A	G	1.686e^-4	0.768	INTRON CG7510
3R	11520914	3R_11520914_SNP [dm3] 3R_15695192_SNP [dm6]	A	C	1.686e^-4	0.768	UPSTREAM CG5399 DOWNSTREAM CG31446 INTERGENIC
3R	26874059	3R_26874059_SNP [dm3] 3R_31048337_SNP [dm6]	C	G	1.689e^-4	0.768	UPSTREAM Aph-4 INTERGENIC
3L	5643446	3L_5643446_SNP [dm3] 3L_5650346_SNP [dm6]	C	A	1.703e^-4	0.768	UTR_3_PRIME Blimp-1
2L	4030203	2L_4030203_SNP [dm3] 2L_4030203_SNP [dm6]	T	A	1.719e^-4	0.768	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
3L	447617	3L_447617_SNP [dm3] 3L_447617_SNP [dm6]	A	C	1.720e^-4	0.768	INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	19041122	3R_19041122_SNP [dm3] 3R_23215400_SNP [dm6]	G	A	1.724e^-4	0.768	UPSTREAM cnc INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	15382345	2L_15382345_SNP [dm3] 2L_15382345_SNP [dm6]	G	T	1.725e^-4	0.768	INTERGENIC
3L	6070259	3L_6070259_SNP [dm3] 3L_6077159_SNP [dm6]	C	T	1.735e^-4	0.768	SYNONYMOUS_CODING CG6619 DOWNSTREAM CG6610	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3778962	3L_3778962_SNP [dm3] 3L_3778962_SNP [dm6]	T	C	1.752e^-4	0.768	INTRON CG32264
3L	13689109	3L_13689109_SNP [dm3] 3L_13696009_SNP [dm6]	G	C	1.753e^-4	0.768	INTRON bru-3
2L	11969958	2L_11969958_SNP [dm3] 2L_11969958_SNP [dm6]	T	G	1.755e^-4	0.768	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7567868	2L_7567868_SNP [dm3] 2L_7567868_SNP [dm6]	T	C	1.759e^-4	0.768	INTRON RapGAP1
X	10852639	X_10852639_SNP [dm3] X_10958606_SNP [dm6]	C	A	1.771e^-4	0.768	INTRON Myo10A
X	7585157	X_7585157_SNP [dm3] X_7691124_SNP [dm6]	T	A	1.771e^-4	0.768	INTRON CHES-1-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	10697121	2L_10697121_SNP [dm3] 2L_10697121_SNP [dm6]	G	C	1.772e^-4	0.768	NON_SYNONYMOUS_CODING CG7300 EXON CR44181	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20431489	X_20431489_SNP [dm3] X_20560462_SNP [dm6]	T	A	1.774e^-4	0.768	INTRON RunxB
3L	2626704	3L_2626704_SNP [dm3] 3L_2626704_SNP [dm6]	C	T	1.776e^-4	0.768	INTRON Pxn	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	19042592	3L_19042592_DEL [dm3] 3L_19049492_DEL [dm6]	TCACG	T	1.778e^-4	0.768	INTERGENIC
3R	20919897	3R_20919897_SNP [dm3] 3R_25094175_SNP [dm6]	T	G	1.781e^-4	0.768	UPSTREAM fd96Cb INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	10697128	2L_10697128_SNP [dm3] 2L_10697128_SNP [dm6]	C	T	1.782e^-4	0.768	SYNONYMOUS_CODING CG7300 EXON CR44181	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16226630	3R_16226630_SNP [dm3] 3R_20400908_SNP [dm6]	T	G	1.792e^-4	0.768	UTR_3_PRIME Gfrl INTRON Gfrl
2L	9840967	2L_9840967_SNP [dm3] 2L_9840967_SNP [dm6]	G	T	1.792e^-4	0.768	INTRON nAChRalpha6
3L	3518512	3L_3518512_SNP [dm3] 3L_3518512_SNP [dm6]	A	T	1.796e^-4	0.768	INTRON Eip63E
X	7604467	X_7604467_SNP [dm3] X_7710434_SNP [dm6]	T	C	1.803e^-4	0.768	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	23369757	3R_23369757_SNP [dm3] 3R_27544035_SNP [dm6]	G	A	1.806e^-4	0.768	UPSTREAM Gr98c DOWNSTREAM Gr98b INTERGENIC
2L	309609	2L_309609_SNP [dm3] 2L_309609_SNP [dm6]	A	G	1.810e^-4	0.768	UPSTREAM Plc21C & 1 other INTRON Plc21C	TF binding site BDTNP1_TFBS_dl
3L	6070190	3L_6070190_SNP [dm3] 3L_6077090_SNP [dm6]	C	T	1.811e^-4	0.768	SYNONYMOUS_CODING CG6619 DOWNSTREAM CG6610	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8767091	2R_8767091_SNP [dm3] 2R_12879586_SNP [dm6]	C	A	1.811e^-4	0.768	UTR_5_PRIME Nmda1 UPSTREAM Nmda1 & 1 other INTRON Aats-asp & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	16254147	X_16254147_SNP [dm3] X_16360114_SNP [dm6]	A	T	1.812e^-4	0.768	NON_SYNONYMOUS_CODING Gpi1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_zfh1
2L	4389054	2L_4389054_SNP [dm3] 2L_4389054_SNP [dm6]	T	C	1.816e^-4	0.768	INTRON Tps1
2L	17803970	2L_17803970_SNP [dm3] 2L_17803970_SNP [dm6]	C	T	1.817e^-4	0.768	INTRON CadN2
2R	18498535	2R_18498535_SNP [dm3] 2R_22611030_SNP [dm6]	G	T	1.819e^-4	0.768	SYNONYMOUS_CODING CG4329	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	13865035	X_13865035_SNP [dm3] X_13971002_SNP [dm6]	G	A	1.828e^-4	0.768	INTRON mamo
2R	465450	2R_465450_SNP [dm3] 2R_4577945_SNP [dm6]	T	G	1.832e^-4	0.768	INTERGENIC
2L	10697203	2L_10697203_SNP [dm3] 2L_10697203_SNP [dm6]	A	C	1.835e^-4	0.768	SYNONYMOUS_CODING CG7300 EXON CR44181	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10824324	2L_10824324_SNP [dm3] 2L_10824324_SNP [dm6]	G	A	1.840e^-4	0.768	INTRON Nos
3L	3264120	3L_3264120_SNP [dm3] 3L_3264120_SNP [dm6]	C	T	1.857e^-4	0.768	INTRON ckd
2L	6419667	2L_6419667_SNP [dm3] 2L_6419667_SNP [dm6]	T	A	1.860e^-4	0.768	SYNONYMOUS_CODING Tig	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5285345	3L_5285345_SNP [dm3] 3L_5292245_SNP [dm6]	A	T	1.867e^-4	0.768	INTERGENIC
2L	15262327	2L_15262327_INS [dm3] 2L_15262327_INS [dm6]	T	TGGATGT	1.881e^-4	0.768	DOWNSTREAM yuri INTRON yuri
2L	17713219	2L_17713219_SNP [dm3] 2L_17713219_SNP [dm6]	T	C	1.882e^-4	0.768	INTRON CadN
2L	15027829	2L_15027829_SNP [dm3] 2L_15027829_SNP [dm6]	T	C	1.883e^-4	0.768	SYNONYMOUS_CODING CG33310 INTRON GABA-B-R1
2L	7567537	2L_7567537_SNP [dm3] 2L_7567537_SNP [dm6]	A	T	1.884e^-4	0.768	INTRON RapGAP1
2R	6581316	2R_6581316_SNP [dm3] 2R_10693811_SNP [dm6]	G	A	1.884e^-4	0.768	INTRON stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	18303265	2L_18303265_SNP [dm3] 2L_18303265_SNP [dm6]	A	G	1.889e^-4	0.768	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA
2L	17943046	2L_17943046_SNP [dm3] 2L_17943046_SNP [dm6]	C	A	1.892e^-4	0.768	INTERGENIC
2L	180019	2L_180019_INS [dm3] 2L_180019_INS [dm6]	C	CCAAC	1.893e^-4	0.768	INTRON spen	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
X	7590117	X_7590117_SNP [dm3] X_7696084_SNP [dm6]	A	T	1.896e^-4	0.768	INTRON CHES-1-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	14273833	2R_14273833_DEL [dm3] 2R_18386328_DEL [dm6]	TG	T	1.904e^-4	0.768	UPSTREAM CG15067 & 1 other INTERGENIC
2L	13046572	2L_13046572_SNP [dm3] 2L_13046572_SNP [dm6]	A	T	1.905e^-4	0.768	INTRON CG9932
2R	4494841	2R_4494841_SNP [dm3] 2R_8607336_SNP [dm6]	A	T	1.906e^-4	0.768	INTRON rgr	TF binding site BDTNP1_TFBS_twi
3L	4210726	3L_4210726_SNP [dm3] 3L_4210726_SNP [dm6]	A	G	1.909e^-4	0.768	DOWNSTREAM Cpr64Ab INTRON CG43367
3L	19598539	3L_19598539_SNP [dm3] 3L_19605439_SNP [dm6]	A	G	1.911e^-4	0.768	UTR_5_PRIME lush UPSTREAM CG9372	TF binding site mE1_TFBS_cad
X	17233674	X_17233674_SNP [dm3] X_17339641_SNP [dm6]	T	G	1.915e^-4	0.768	INTERGENIC
3L	3520579	3L_3520579_SNP [dm3] 3L_3520579_SNP [dm6]	T	G	1.921e^-4	0.768	INTRON Eip63E
3L	2744623	3L_2744623_SNP [dm3] 3L_2744623_SNP [dm6]	C	T	1.925e^-4	0.768	INTRON Mrtf
2L	4502788	2L_4502788_SNP [dm3] 2L_4502788_SNP [dm6]	G	C	1.928e^-4	0.768	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	13562231	2R_13562231_SNP [dm3] 2R_17674726_SNP [dm6]	A	G	1.928e^-4	0.768	NON_SYNONYMOUS_CODING Sema-1b
2R	1615298	2R_1615298_INS [dm3] 2R_5727793_INS [dm6]	T	TT	1.936e^-4	0.768	UPSTREAM ap INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	13685240	3L_13685240_SNP [dm3] 3L_13692140_SNP [dm6]	C	A	1.936e^-4	0.768	INTRON bru-3
X	8391409	X_8391409_SNP [dm3] X_8497376_SNP [dm6]	T	C	1.937e^-4	0.768	INTRON CG33181
3L	5302045	3L_5302045_SNP [dm3] 3L_5308945_SNP [dm6]	C	T	1.938e^-4	0.768	INTERGENIC
X	7599869	X_7599869_SNP [dm3] X_7705836_SNP [dm6]	G	A	1.940e^-4	0.768	UPSTREAM CHES-1-like INTRON CHES-1-like	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	7854478	3L_7854478_SNP [dm3] 3L_7861378_SNP [dm6]	T	C	1.943e^-4	0.768	INTRON Pdp1
2L	12328972	2L_12328972_DEL [dm3] 2L_12328972_DEL [dm6]	TT	T	1.945e^-4	0.768	INTERGENIC
X	18910737	X_18910737_SNP [dm3] X_19016704_SNP [dm6]	G	A	1.949e^-4	0.768	INTRON CG43759
X	4750618	X_4750618_SNP [dm3] X_4856585_SNP [dm6]	A	T	1.960e^-4	0.77	INTRON CG42594
X	7605745	X_7605745_SNP [dm3] X_7711712_SNP [dm6]	A	C	1.963e^-4	0.77	INTERGENIC
3L	6066683	3L_6066683_SNP [dm3] 3L_6073583_SNP [dm6]	C	T	1.968e^-4	0.771	NON_SYNONYMOUS_CODING CG13295 DOWNSTREAM CG6602
3R	4168366	3R_4168366_SNP [dm3] 3R_8342644_SNP [dm6]	G	A	1.975e^-4	0.772	NON_SYNONYMOUS_CODING CG9601 DOWNSTREAM Arl2
3R	26913737	3R_26913737_SNP [dm3] 3R_31088015_SNP [dm6]	A	T	1.990e^-4	0.774	INTERGENIC
X	12356818	X_12356818_SNP [dm3] X_12462785_SNP [dm6]	G	A	1.990e^-4	0.774	UPSTREAM Rab40 & 1 other INTRON Rab40	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	7081241	2L_7081241_SNP [dm3] 2L_7081241_SNP [dm6]	A	C	1.997e^-4	0.774	INTRON Pvf2
3R	13007891	3R_13007891_SNP [dm3] 3R_17182169_SNP [dm6]	G	A	1.997e^-4	0.774	INTRON Mur89F
X	7604168	X_7604168_SNP [dm3] X_7710135_SNP [dm6]	G	A	2.004e^-4	0.775	UPSTREAM CHES-1-like INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	4500783	2L_4500783_SNP [dm3] 2L_4500783_SNP [dm6]	G	A	2.010e^-4	0.776	SYNONYMOUS_CODING dp INTRON dp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	7500767	X_7500767_SNP [dm3] X_7606734_SNP [dm6]	A	G	2.021e^-4	0.778	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	17898302	2L_17898302_SNP [dm3] 2L_17898302_SNP [dm6]	G	C	2.025e^-4	0.778	INTERGENIC
2R	15814380	2R_15814380_SNP [dm3] 2R_19926875_SNP [dm6]	G	A	2.029e^-4	0.778	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	14265482	2R_14265482_SNP [dm3] 2R_18377977_SNP [dm6]	C	T	2.043e^-4	0.782	INTRON CR42736	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	2433899	3L_2433899_SNP [dm3] 3L_2433899_SNP [dm6]	C	T	2.049e^-4	0.783	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9279998	2L_9279998_SNP [dm3] 2L_9279998_SNP [dm6]	G	T	2.074e^-4	0.789	INTRON Ggamma30A
X	21948232	X_21948232_DEL [dm3] X_22546396_DEL [dm6]	TAAGCA	T	2.084e^-4	0.789	UPSTREAM CG17601 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
X	7603490	X_7603490_SNP [dm3] X_7709457_SNP [dm6]	C	T	2.087e^-4	0.789	UPSTREAM CHES-1-like DOWNSTREAM CR43287 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	12683666	2R_12683666_SNP [dm3] 2R_16796161_SNP [dm6]	C	A	2.087e^-4	0.789	INTRON CG15615
3L	5142372	3L_5142372_SNP [dm3] 3L_5149272_SNP [dm6]	A	C	2.088e^-4	0.789	SYNONYMOUS_CODING Aats-ala-m DOWNSTREAM Gen
X	6877713	X_6877713_SNP [dm3] X_6983680_SNP [dm6]	A	T	2.098e^-4	0.79	UTR_5_PRIME ogre UPSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	6750680	2L_6750680_DEL [dm3] 2L_6750680_DEL [dm6]	TT	T	2.101e^-4	0.79	INTRON CG11221
X	7600884	X_7600884_SNP [dm3] X_7706851_SNP [dm6]	T	C	2.107e^-4	0.79	UPSTREAM CR43287 INTRON CHES-1-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2L	18443858	2L_18443858_SNP [dm3] 2L_18443858_SNP [dm6]	T	G	2.108e^-4	0.79	UPSTREAM RpS26 DOWNSTREAM ncm INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	1021752	3L_1021752_SNP [dm3] 3L_1021752_SNP [dm6]	G	A	2.112e^-4	0.79	INTRON trio
3L	7851272	3L_7851272_SNP [dm3] 3L_7858172_SNP [dm6]	A	C	2.120e^-4	0.79	INTRON Pdp1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3754569	3L_3754569_SNP [dm3] 3L_3754569_SNP [dm6]	G	C	2.121e^-4	0.79	NON_SYNONYMOUS_CODING ppk27 INTRON CG32264
3L	10886120	3L_10886120_SNP [dm3] 3L_10893020_SNP [dm6]	C	A	2.132e^-4	0.79	DOWNSTREAM Cpr67Fa2 & 1 other INTERGENIC
2R	13825643	2R_13825643_SNP [dm3] 2R_17938138_SNP [dm6]	T	G	2.136e^-4	0.79	INTERGENIC
3R	11528714	3R_11528714_SNP [dm3] 3R_15702992_SNP [dm6]	C	T	2.139e^-4	0.79	INTERGENIC
3L	6070250	3L_6070250_SNP [dm3] 3L_6077150_SNP [dm6]	A	G	2.148e^-4	0.79	SYNONYMOUS_CODING CG6619 DOWNSTREAM CG6610	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11185212	2L_11185212_INS [dm3] 2L_11185212_INS [dm6]	C	CC	2.149e^-4	0.79	INTRON Ca-beta	TF binding site BDTNP1_TFBS_prd mE1_TFBS_sens
2L	11185214	2L_11185214_SNP [dm3] 2L_11185214_SNP [dm6]	C	T	2.149e^-4	0.79	INTRON Ca-beta	TF binding site BDTNP1_TFBS_prd mE1_TFBS_sens
2L	9175912	2L_9175912_SNP [dm3] 2L_9175912_SNP [dm6]	T	A	2.153e^-4	0.79	UPSTREAM tai INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	12270796	2R_12270796_DEL [dm3] 2R_16383291_DEL [dm6]	CCA	C	2.159e^-4	0.79	UTR_3_PRIME CG43187	transposable element FlyBase
2L	11185221	2L_11185221_SNP [dm3] 2L_11185221_SNP [dm6]	G	A	2.161e^-4	0.79	INTRON Ca-beta	TF binding site BDTNP1_TFBS_prd mE1_TFBS_sens
3L	14277181	3L_14277181_SNP [dm3] 3L_14284081_SNP [dm6]	C	T	2.165e^-4	0.79	INTRON fz
2R	13825642	2R_13825642_SNP [dm3] 2R_17938137_SNP [dm6]	A	G	2.165e^-4	0.79	INTERGENIC
3L	13049374	3L_13049374_SNP [dm3] 3L_13056274_SNP [dm6]	C	A	2.173e^-4	0.791	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5403059	2L_5403059_SNP [dm3] 2L_5403059_SNP [dm6]	C	A	2.195e^-4	0.793	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	19902019	2R_19902019_SNP [dm3] 2R_24014496_SNP [dm6]	G	T	2.196e^-4	0.793	UPSTREAM Unc-89 DOWNSTREAM CG4324 INTERGENIC
3L	3363765	3L_3363765_SNP [dm3] 3L_3363765_SNP [dm6]	G	C	2.200e^-4	0.793	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6072502	3L_6072502_SNP [dm3] 3L_6079402_SNP [dm6]	C	T	2.202e^-4	0.793	SYNONYMOUS_CODING CG6619	TF binding site mE1_TFBS_cad
3R	18541740	3R_18541740_SNP [dm3] 3R_22716018_SNP [dm6]	T	C	2.204e^-4	0.793	SYNONYMOUS_CODING wge	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7479694	2L_7479694_SNP [dm3] 2L_7479694_SNP [dm6]	C	T	2.210e^-4	0.793	SYNONYMOUS_CODING Ziz
2L	11692865	2L_11692865_SNP [dm3] 2L_11692865_SNP [dm6]	C	A	2.210e^-4	0.793	INTERGENIC	TF binding site mE1_TFBS_inv
X	5850108	X_5850108_INS [dm3] X_5956075_INS [dm6]	G	GAT	2.217e^-4	0.793	INTRON CG6067
X	16760773	X_16760773_SNP [dm3] X_16866740_SNP [dm6]	C	A	2.218e^-4	0.793	INTRON CG13003
2L	1834500	2L_1834500_SNP [dm3] 2L_1834500_SNP [dm6]	C	T	2.221e^-4	0.793	INTERGENIC
X	15505372	X_15505372_SNP [dm3] X_15611339_SNP [dm6]	T	C	2.228e^-4	0.793	INTRON sog	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25293163	3R_25293163_SNP [dm3] 3R_29467441_SNP [dm6]	T	C	2.231e^-4	0.793	INTRON Ptp99A
X	16949994	X_16949994_SNP [dm3] X_17055961_SNP [dm6]	G	A	2.231e^-4	0.793	INTRON CG45002
3R	26858311	3R_26858311_SNP [dm3] 3R_31032589_SNP [dm6]	G	A	2.239e^-4	0.794	INTERGENIC
2L	4533198	2L_4533198_SNP [dm3] 2L_4533198_SNP [dm6]	A	G	2.245e^-4	0.794	INTRON dp	TF binding site mE1_TFBS_sens
X	19903248	X_19903248_DEL [dm3] X_20009215_DEL [dm6]	AATCA	A	2.250e^-4	0.794	INTRON Dop2R
2R	9121555	2R_9121555_SNP [dm3] 2R_13234050_SNP [dm6]	C	G	2.251e^-4	0.794	NON_SYNONYMOUS_CODING CG4670	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2396369	3L_2396369_SNP [dm3] 3L_2396369_SNP [dm6]	C	T	2.264e^-4	0.796	INTRON CG45186
3R	27439947	3R_27439947_SNP [dm3] 3R_31614225_SNP [dm6]	C	G	2.270e^-4	0.796	SPLICE_SITE_REGION Med INTRON Med	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17809594	2R_17809594_SNP [dm3] 2R_21922089_SNP [dm6]	T	C	2.277e^-4	0.796	INTRON Fili
3L	495713	3L_495713_SNP [dm3] 3L_495713_SNP [dm6]	C	T	2.279e^-4	0.796	INTRON klar
2R	19006191	2R_19006191_SNP [dm3] 2R_23118668_SNP [dm6]	T	C	2.293e^-4	0.796	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	9192877	2L_9192877_SNP [dm3] 2L_9192877_SNP [dm6]	T	A	2.293e^-4	0.796	INTRON tai
2R	12275240	2R_12275240_SNP [dm3] 2R_16387735_SNP [dm6]	C	A	2.298e^-4	0.796	INTRON Sema-2b
3R	13045227	3R_13045227_SNP [dm3] 3R_17219505_SNP [dm6]	C	T	2.300e^-4	0.796	INTRON CG31262
2L	17799009	2L_17799009_SNP [dm3] 2L_17799009_SNP [dm6]	G	A	2.303e^-4	0.796	SYNONYMOUS_CODING CadN2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6280133	3L_6280133_SNP [dm3] 3L_6287033_SNP [dm6]	G	A	2.308e^-4	0.796	INTERGENIC
3L	1448723	3L_1448723_SNP [dm3] 3L_1448723_SNP [dm6]	G	T	2.311e^-4	0.796	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_sens
3R	14550325	3R_14550325_SNP [dm3] 3R_18724603_SNP [dm6]	C	T	2.311e^-4	0.796	DOWNSTREAM CG7714 INTRON Cha
2L	4502843	2L_4502843_SNP [dm3] 2L_4502843_SNP [dm6]	A	G	2.323e^-4	0.796	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	4384834	2L_4384834_SNP [dm3] 2L_4384834_SNP [dm6]	T	C	2.323e^-4	0.796	SYNONYMOUS_CODING CG3338	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18728752	3R_18728752_SNP [dm3] 3R_22903030_SNP [dm6]	G	A	2.330e^-4	0.796	INTRON klg
2L	132312	2L_132312_SNP [dm3] 2L_132312_SNP [dm6]	T	G	2.331e^-4	0.796	UTR_5_PRIME Gs1 INTRON CG11455 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	10758611	3L_10758611_SNP [dm3] 3L_10765511_SNP [dm6]	A	T	2.336e^-4	0.796	INTERGENIC
2L	1737634	2L_1737634_SNP [dm3] 2L_1737634_SNP [dm6]	C	A	2.336e^-4	0.796	UTR_5_PRIME CG17646 INTRON CG17646	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	7853844	3L_7853844_SNP [dm3] 3L_7860744_SNP [dm6]	A	T	2.338e^-4	0.796	INTRON Pdp1
2L	4384765	2L_4384765_SNP [dm3] 2L_4384765_SNP [dm6]	T	G	2.368e^-4	0.799	SYNONYMOUS_CODING CG3338	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	7602521	X_7602521_SNP [dm3] X_7708488_SNP [dm6]	C	G	2.368e^-4	0.799	INTRON CHES-1-like & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	7461920	2R_7461920_SNP [dm3] 2R_11574415_SNP [dm6]	G	A	2.369e^-4	0.799	INTERGENIC
3L	18602002	3L_18602002_SNP [dm3] 3L_18608902_SNP [dm6]	A	T	2.371e^-4	0.799	NON_SYNONYMOUS_CODING CG18231 UPSTREAM CG32201 INTRON CG4174 & 1 other
3R	2734555	3R_2734555_SNP [dm3] 3R_6908833_SNP [dm6]	T	G	2.374e^-4	0.799	INTRON Antp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	12275241	2R_12275241_SNP [dm3] 2R_16387736_SNP [dm6]	A	G	2.376e^-4	0.799	INTRON Sema-2b
2R	17742254	2R_17742254_SNP [dm3] 2R_21854749_SNP [dm6]	G	A	2.379e^-4	0.799	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9194096	2L_9194096_DEL [dm3] 2L_9194096_DEL [dm6]	TGGGGAT	T	2.382e^-4	0.799	INTRON tai
2L	6405045	2L_6405045_SNP [dm3] 2L_6405045_SNP [dm6]	C	T	2.401e^-4	0.804	INTRON CG42368
X	7605759	X_7605759_SNP [dm3] X_7711726_SNP [dm6]	A	G	2.420e^-4	0.809	INTERGENIC
2L	12599014	2L_12599014_DEL [dm3] 2L_12599014_DEL [dm6]	AAAAGGTGTTACTAAGCTCT...	A	2.425e^-4	0.809	INTRON nub
3R	11818697	3R_11818697_SNP [dm3] 3R_15992975_SNP [dm6]	G	A	2.429e^-4	0.809	INTRON srp & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	1535103	3L_1535103_SNP [dm3] 3L_1535103_SNP [dm6]	A	G	2.435e^-4	0.81	UTR_3_PRIME CG12091	TF binding site mE1_TFBS_cad
3R	18393499	3R_18393499_SNP [dm3] 3R_22567777_SNP [dm6]	A	C	2.448e^-4	0.812	INTERGENIC
2L	4502644	2L_4502644_SNP [dm3] 2L_4502644_SNP [dm6]	G	A	2.452e^-4	0.813	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12319326	2L_12319326_SNP [dm3] 2L_12319326_SNP [dm6]	T	C	2.458e^-4	0.813	INTERGENIC
2L	18014518	2L_18014518_DEL [dm3] 2L_18014518_DEL [dm6]	AA	A	2.472e^-4	0.814	INTRON rdo	regulatory region REDfly_CRMs
X	9557566	X_9557566_SNP [dm3] X_9663533_SNP [dm6]	T	C	2.475e^-4	0.814	UPSTREAM CG3106 INTERGENIC
3R	20628431	3R_20628431_SNP [dm3] 3R_24802709_SNP [dm6]	A	C	2.475e^-4	0.814	SYNONYMOUS_CODING polybromo
X	19158603	X_19158603_DEL [dm3] X_19264570_DEL [dm6]	TCCTATCTCTGTCT...	T	2.483e^-4	0.816	INTRON Vav	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	16902077	3R_16902077_SNP [dm3] 3R_21076355_SNP [dm6]	G	T	2.490e^-4	0.817	DOWNSTREAM HHEX INTRON dmrt93B	TF binding site mE1_TFBS_chinmo
3L	3520578	3L_3520578_SNP [dm3] 3L_3520578_SNP [dm6]	T	C	2.504e^-4	0.82	INTRON Eip63E
2R	14262002	2R_14262002_SNP [dm3] 2R_18374497_SNP [dm6]	A	C	2.511e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	847833	3L_847833_SNP [dm3] 3L_847833_SNP [dm6]	G	A	2.519e^-4	0.82	SYNONYMOUS_CODING CG13889	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8729593	X_8729593_SNP [dm3] X_8835560_SNP [dm6]	A	C	2.527e^-4	0.82	EXON CR45537
3L	4526321	3L_4526321_SNP [dm3] 3L_4526321_SNP [dm6]	T	G	2.541e^-4	0.82	INTRON Tie
3R	12678736	3R_12678736_DEL [dm3] 3R_16853014_DEL [dm6]	GCCATTAG	G	2.550e^-4	0.82	INTRON iab-8 & 1 other EXON iab-4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	7854381	3L_7854381_SNP [dm3] 3L_7861281_SNP [dm6]	G	A	2.551e^-4	0.82	INTRON Pdp1
3L	16041690	3L_16041690_SNP [dm3] 3L_16048590_SNP [dm6]	T	C	2.552e^-4	0.82	UPSTREAM CR43951 INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	17899612	2R_17899612_INS [dm3] 2R_22012107_INS [dm6]	A	AGGTATTTCT	2.554e^-4	0.82	INTRON CG34370
3R	9691764	3R_9691764_SNP [dm3] 3R_13866042_SNP [dm6]	G	A	2.554e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	9691783	3R_9691783_SNP [dm3] 3R_13866061_SNP [dm6]	T	A	2.554e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_Kr
X	8275218	X_8275218_SNP [dm3] X_8381185_SNP [dm6]	G	A	2.563e^-4	0.82	INTERGENIC
3R	19924856	3R_19924856_SNP [dm3] 3R_24099134_SNP [dm6]	T	C	2.566e^-4	0.82	INTRON 4EHP
X	3547095	X_3547095_DEL [dm3] X_3653062_DEL [dm6]	TT	T	2.571e^-4	0.82	INTRON AstA-R1
3R	20017063	3R_20017063_SNP [dm3] 3R_24191341_SNP [dm6]	A	G	2.572e^-4	0.82	INTRON jnj
X	7581981	X_7581981_SNP [dm3] X_7687948_SNP [dm6]	G	A	2.576e^-4	0.82	SYNONYMOUS_CODING CHES-1-like
2L	2687548	2L_2687548_SNP [dm3] 2L_2687548_SNP [dm6]	G	A	2.580e^-4	0.82	INTRON CG31690
2L	9422595	2L_9422595_SNP [dm3] 2L_9422595_SNP [dm6]	C	A	2.584e^-4	0.82	INTRON Mco1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	7604539	X_7604539_SNP [dm3] X_7710506_SNP [dm6]	T	C	2.588e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	8767254	2L_8767254_SNP [dm3] 2L_8767254_SNP [dm6]	G	A	2.589e^-4	0.82	SYNONYMOUS_CODING CG9463
2R	1384729	2R_1384729_SNP [dm3] 2R_5497224_SNP [dm6]	T	C	2.595e^-4	0.82	INTRON CG30438
2L	7255282	2L_7255282_SNP [dm3] 2L_7255282_SNP [dm6]	C	G	2.596e^-4	0.82	DOWNSTREAM Wnt4 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	11355930	X_11355930_DEL [dm3] X_11461897_DEL [dm6]	ACTGAAAAATTAACCCTCCG...	G	2.603e^-4	0.82	INTRON CG43155	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	10537938	X_10537938_SNP [dm3] X_10643905_SNP [dm6]	T	C	2.625e^-4	0.826	INTRON X11Lbeta
X	8391712	X_8391712_SNP [dm3] X_8497679_SNP [dm6]	C	T	2.636e^-4	0.828	INTRON CG33181	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7000307	X_7000307_SNP [dm3] X_7106274_SNP [dm6]	C	T	2.645e^-4	0.83	UTR_3_PRIME CG8300 & 1 other
3L	10174202	3L_10174202_SNP [dm3] 3L_10181102_SNP [dm6]	A	G	2.656e^-4	0.83	INTRON dpr10
2R	17905648	2R_17905648_SNP [dm3] 2R_22018143_SNP [dm6]	G	A	2.661e^-4	0.83	INTRON CG34370
3L	16789038	3L_16789038_SNP [dm3] 3L_16795938_SNP [dm6]	C	G	2.663e^-4	0.83	SYNONYMOUS_CODING CG9674	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10697218	2L_10697218_SNP [dm3] 2L_10697218_SNP [dm6]	A	C	2.664e^-4	0.83	NON_SYNONYMOUS_CODING CG7300 EXON CR44181	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14759860	3R_14759860_SNP [dm3] 3R_18934138_SNP [dm6]	A	T	2.671e^-4	0.83	INTRON CG42613
3L	3520566	3L_3520566_SNP [dm3] 3L_3520566_SNP [dm6]	T	A	2.682e^-4	0.83	INTRON Eip63E
X	18910814	X_18910814_SNP [dm3] X_19016781_SNP [dm6]	A	C	2.682e^-4	0.83	INTRON CG43759
3R	20493672	3R_20493672_SNP [dm3] 3R_24667950_SNP [dm6]	A	C	2.683e^-4	0.83	UPSTREAM slo INTRON slo	regulatory region REDfly_CRMs
2L	7392948	2L_7392948_INS [dm3] 2L_7392948_INS [dm6]	A	ATA	2.694e^-4	0.832	INTRON CG5160
2L	9281511	2L_9281511_SNP [dm3] 2L_9281511_SNP [dm6]	C	A	2.699e^-4	0.832	INTRON Ggamma30A
3L	1782296	3L_1782296_SNP [dm3] 3L_1782296_SNP [dm6]	G	A	2.702e^-4	0.832	SYNONYMOUS_CODING alpha-Spec	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	6068358	3L_6068358_SNP [dm3] 3L_6075258_SNP [dm6]	T	A	2.706e^-4	0.832	UPSTREAM CG6610 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
2R	9878324	2R_9878324_DEL [dm3] 2R_13990819_DEL [dm6]	TTTGTGATGTCAATGT...	T	2.720e^-4	0.833	UPSTREAM mam & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	10885990	3L_10885990_SNP [dm3] 3L_10892890_SNP [dm6]	A	C	2.723e^-4	0.833	DOWNSTREAM Cpr67Fa2 & 1 other INTERGENIC
X	8208829	X_8208829_SNP [dm3] X_8314796_SNP [dm6]	T	A	2.724e^-4	0.833	INTRON nAChRalpha3
2L	4502560	2L_4502560_SNP [dm3] 2L_4502560_SNP [dm6]	G	C	2.734e^-4	0.835	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3490934	2L_3490934_SNP [dm3] 2L_3490934_SNP [dm6]	G	T	2.738e^-4	0.835	UTR_5_PRIME CG15414
2L	4507910	2L_4507910_SNP [dm3] 2L_4507910_SNP [dm6]	A	G	2.744e^-4	0.835	INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26916749	3R_26916749_SNP [dm3] 3R_31091027_SNP [dm6]	T	G	2.751e^-4	0.836	UTR_3_PRIME CG11317
X	9557552	X_9557552_SNP [dm3] X_9663519_SNP [dm6]	A	C	2.769e^-4	0.838	UPSTREAM CG3106 INTERGENIC
3R	26009889	3R_26009889_SNP [dm3] 3R_30184167_SNP [dm6]	A	T	2.782e^-4	0.838	EXON CR44262
X	10537973	X_10537973_SNP [dm3] X_10643940_SNP [dm6]	A	G	2.783e^-4	0.838	INTRON X11Lbeta
2L	18027540	2L_18027540_SNP [dm3] 2L_18027540_SNP [dm6]	G	A	2.786e^-4	0.838	INTRON rdo
2L	6973944	2L_6973944_SNP [dm3] 2L_6973944_SNP [dm6]	C	T	2.786e^-4	0.838	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	16333418	2L_16333418_SNP [dm3] 2L_16333418_SNP [dm6]	T	C	2.796e^-4	0.838	NON_SYNONYMOUS_CODING CG31817	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4546687	2L_4546687_SNP [dm3] 2L_4546687_SNP [dm6]	A	G	2.808e^-4	0.838	NON_SYNONYMOUS_CODING dp INTRON dp
3L	16903828	3L_16903828_SNP [dm3] 3L_16910728_SNP [dm6]	A	G	2.813e^-4	0.838	UPSTREAM Lmpt INTRON Lmpt
2R	440468	2R_440468_INS [dm3] 2R_4552963_INS [dm6]	G	GG	2.814e^-4	0.838	INTRON Stlk	transposable element FlyBase
2R	19921149	2R_19921149_SNP [dm3] 2R_24033626_SNP [dm6]	G	T	2.823e^-4	0.838	UPSTREAM MAN1 INTRON Chi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	5918806	3L_5918806_SNP [dm3] 3L_5925706_SNP [dm6]	G	A	2.834e^-4	0.838	INTRON Vap-33B	TF binding site BDTNP1_TFBS_dl
2R	20723979	2R_20723979_SNP [dm3] 2R_24836456_SNP [dm6]	A	G	2.838e^-4	0.838	DOWNSTREAM Dll INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	11182562	2L_11182562_SNP [dm3] 2L_11182562_SNP [dm6]	C	T	2.840e^-4	0.838	INTRON Ca-beta
3R	27234872	3R_27234872_SNP [dm3] 3R_31409150_SNP [dm6]	G	C	2.843e^-4	0.838	INTRON Gprk2
3L	10606804	3L_10606804_SNP [dm3] 3L_10613704_SNP [dm6]	T	A	2.848e^-4	0.838	INTERGENIC
2L	12705853	2L_12705853_SNP [dm3] 2L_12705853_SNP [dm6]	G	A	2.856e^-4	0.838	SYNONYMOUS_CODING spict DOWNSTREAM CG15484	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14923599	X_14923599_SNP [dm3] X_15029566_SNP [dm6]	C	A	2.859e^-4	0.838	INTRON hiw & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17020648	2R_17020648_SNP [dm3] 2R_21133143_SNP [dm6]	C	G	2.860e^-4	0.838	INTRON Magi
2R	20125868	2R_20125868_SNP [dm3] 2R_24238345_SNP [dm6]	A	G	2.863e^-4	0.838	EXON CR44827
2L	13046573	2L_13046573_SNP [dm3] 2L_13046573_SNP [dm6]	A	T	2.865e^-4	0.838	INTRON CG9932
2R	18741676	2R_18741676_SNP [dm3] 2R_22854153_SNP [dm6]	A	T	2.866e^-4	0.838	UPSTREAM RpL23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	4502078	2L_4502078_SNP [dm3] 2L_4502078_SNP [dm6]	G	A	2.868e^-4	0.838	INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	3586238	2R_3586238_SNP [dm3] 2R_7698733_SNP [dm6]	A	T	2.875e^-4	0.838	UTR_5_PRIME CG1399 UPSTREAM CG30493 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	4300178	3R_4300178_SNP [dm3] 3R_8474456_SNP [dm6]	T	C	2.875e^-4	0.838	INTRON CG45263
3L	16450014	3L_16450014_SNP [dm3] 3L_16456914_SNP [dm6]	T	G	2.882e^-4	0.838	INTRON CG33158
2L	13046561	2L_13046561_INS [dm3] 2L_13046561_INS [dm6]	A	AA	2.885e^-4	0.838	INTRON CG9932
2R	17763703	2R_17763703_SNP [dm3] 2R_21876198_SNP [dm6]	T	G	2.892e^-4	0.838	INTRON Fili
3L	7853679	3L_7853679_SNP [dm3] 3L_7860579_SNP [dm6]	A	T	2.895e^-4	0.838	INTRON Pdp1
2R	19152335	2R_19152335_SNP [dm3] 2R_23264812_SNP [dm6]	A	C	2.897e^-4	0.838	SYNONYMOUS_CODING CG12782	TF binding site mE1_TFBS_chinmo
3R	15670105	3R_15670105_SNP [dm3] 3R_19844383_SNP [dm6]	C	A	2.898e^-4	0.838	INTERGENIC
3R	27234175	3R_27234175_SNP [dm3] 3R_31408453_SNP [dm6]	A	T	2.898e^-4	0.838	INTRON Gprk2
3R	14544537	3R_14544537_SNP [dm3] 3R_18718815_SNP [dm6]	C	T	2.904e^-4	0.838	UTR_3_PRIME VAChT INTRON Cha
X	7598875	X_7598875_SNP [dm3] X_7704842_SNP [dm6]	G	T	2.904e^-4	0.838	UTR_5_PRIME CHES-1-like INTRON CHES-1-like	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	10078457	2L_10078457_DEL [dm3] 2L_10078457_DEL [dm6]	TT	A	2.909e^-4	0.838	INTRON CG44153
X	9557551	X_9557551_SNP [dm3] X_9663518_SNP [dm6]	G	T	2.922e^-4	0.839	UPSTREAM CG3106 INTERGENIC
3L	14686188	3L_14686188_SNP [dm3] 3L_14693088_SNP [dm6]	C	A	2.922e^-4	0.839	INTRON ome
X	8060016	X_8060016_SNP [dm3] X_8165983_SNP [dm6]	A	G	2.936e^-4	0.842	UTR_3_PRIME CG2278 UPSTREAM Or7a DOWNSTREAM CG2278
2R	16062058	2R_16062058_SNP [dm3] 2R_20174553_SNP [dm6]	A	G	2.948e^-4	0.843	INTERGENIC
2R	8925239	2R_8925239_SNP [dm3] 2R_13037734_SNP [dm6]	G	A	2.948e^-4	0.843	INTERGENIC
2L	10423035	2L_10423035_SNP [dm3] 2L_10423035_SNP [dm6]	G	A	2.960e^-4	0.845	UPSTREAM CG5168 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	19921286	2R_19921286_SNP [dm3] 2R_24033763_SNP [dm6]	C	A	2.976e^-4	0.847	UTR_5_PRIME Chi UPSTREAM MAN1 INTRON Chi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
2L	13910595	2L_13910595_SNP [dm3] 2L_13910595_SNP [dm6]	T	C	2.978e^-4	0.847	SYNONYMOUS_CODING Ance-2	TF binding site mE1_TFBS_cad
3L	10679575	3L_10679575_SNP [dm3] 3L_10686475_SNP [dm6]	A	C	2.989e^-4	0.847	INTRON simj
2R	13840439	2R_13840439_SNP [dm3] 2R_17952934_SNP [dm6]	C	A	2.994e^-4	0.847	INTERGENIC
3R	25040815	3R_25040815_SNP [dm3] 3R_29215093_SNP [dm6]	T	C	2.995e^-4	0.847	UPSTREAM mir-279 EXON CR31044	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	11072127	X_11072127_SNP [dm3] X_11178094_SNP [dm6]	G	A	2.995e^-4	0.847	INTERGENIC
X	9467558	X_9467558_SNP [dm3] X_9573525_SNP [dm6]	T	C	3.002e^-4	0.847	INTRON CG32699
2L	9829979	2L_9829979_SNP [dm3] 2L_9829979_SNP [dm6]	T	C	3.010e^-4	0.847	INTRON nAChRalpha6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	13594376	2L_13594376_SNP [dm3] 2L_13594376_SNP [dm6]	C	T	3.013e^-4	0.847	INTRON kuz
2R	7312570	2R_7312570_SNP [dm3] 2R_11425065_SNP [dm6]	C	T	3.015e^-4	0.847	UPSTREAM Drip INTRON Drip	TF binding site mE1_TFBS_inv
X	20858268	X_20858268_SNP [dm3] X_20987241_SNP [dm6]	G	A	3.016e^-4	0.847	INTERGENIC
X	21947959	X_21947959_SNP [dm3] X_22546123_SNP [dm6]	T	C	3.024e^-4	0.847	UPSTREAM CG17601 INTERGENIC	TF binding site mE1_TFBS_kn
2R	2449715	2R_2449715_SNP [dm3] 2R_6562210_SNP [dm6]	C	A	3.024e^-4	0.847	INTRON jing
2L	14549284	2L_14549284_SNP [dm3] 2L_14549284_SNP [dm6]	G	T	3.029e^-4	0.847	UPSTREAM CG4218 INTERGENIC	TF binding site mE1_TFBS_cad
2R	18741525	2R_18741525_SNP [dm3] 2R_22854002_SNP [dm6]	T	A	3.051e^-4	0.848	UPSTREAM RpL23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	9735242	X_9735242_INS [dm3] X_9841209_INS [dm6]	G	GAATTTAG	3.054e^-4	0.848	INTRON CG32698
3L	3285091	3L_3285091_SNP [dm3] 3L_3285091_SNP [dm6]	A	G	3.054e^-4	0.848	INTRON CG12017
3L	5915298	3L_5915298_SNP [dm3] 3L_5922198_SNP [dm6]	T	G	3.057e^-4	0.848	UTR_5_PRIME CG32407 UPSTREAM CG10483 & 1 other	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	4387371	2L_4387371_SNP [dm3] 2L_4387371_SNP [dm6]	G	A	3.058e^-4	0.848	UPSTREAM Psf2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2766755	X_2766755_SNP [dm3] X_2872722_SNP [dm6]	C	G	3.065e^-4	0.848	INTRON kirre & 1 other
2L	4432271	2L_4432271_SNP [dm3] 2L_4432271_SNP [dm6]	C	A	3.065e^-4	0.848	INTRON CG15431
X	16760733	X_16760733_SNP [dm3] X_16866700_SNP [dm6]	G	A	3.080e^-4	0.85	INTRON CG13003
2L	5532334	2L_5532334_SNP [dm3] 2L_5532334_SNP [dm6]	T	A	3.081e^-4	0.85	UPSTREAM CG7277 INTRON Cap-D3	TF binding site mE1_TFBS_cad
2L	10730337	2L_10730337_SNP [dm3] 2L_10730337_SNP [dm6]	G	A	3.091e^-4	0.85	SYNONYMOUS_CODING CG17118 DOWNSTREAM CG6443	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	4503261	2L_4503261_SNP [dm3] 2L_4503261_SNP [dm6]	G	C	3.101e^-4	0.85	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25277175	3R_25277175_SNP [dm3] 3R_29451453_SNP [dm6]	A	T	3.103e^-4	0.85	INTRON Ptp99A
2L	16988951	2L_16988951_SNP [dm3] 2L_16988951_SNP [dm6]	G	A	3.108e^-4	0.85	INTRON beat-IIIb
X	21948303	X_21948303_SNP [dm3] X_22546467_SNP [dm6]	T	C	3.121e^-4	0.85	UPSTREAM CG17601 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	9091662	2R_9091662_SNP [dm3] 2R_13204157_SNP [dm6]	G	T	3.121e^-4	0.85	SYNONYMOUS_CODING lat UTR_3_PRIME CG34315	TF binding site mE1_TFBS_cad
3L	15790203	3L_15790203_SNP [dm3] 3L_15797103_SNP [dm6]	A	T	3.134e^-4	0.85	INTERGENIC
X	9910442	X_9910442_SNP [dm3] X_10016409_SNP [dm6]	T	G	3.143e^-4	0.85	UPSTREAM Cht6 INTERGENIC
3R	20006866	3R_20006866_SNP [dm3] 3R_24181144_SNP [dm6]	A	C	3.144e^-4	0.85	UTR_3_PRIME CG13606 INTRON CG13606
2L	11192353	2L_11192353_SNP [dm3] 2L_11192353_SNP [dm6]	T	C	3.161e^-4	0.85	INTRON Ca-beta
2L	10423139	2L_10423139_SNP [dm3] 2L_10423139_SNP [dm6]	T	A	3.162e^-4	0.85	UPSTREAM CG5168 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	4352401	3R_4352401_SNP [dm3] 3R_8526679_SNP [dm6]	T	A	3.172e^-4	0.85	DOWNSTREAM CG31259 INTERGENIC
X	20598715	X_20598715_INS [dm3] X_20727688_INS [dm6]	A	AACACCAT	3.178e^-4	0.85	INTERGENIC
3L	15218396	3L_15218396_SNP [dm3] 3L_15225296_SNP [dm6]	G	A	3.185e^-4	0.85	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	26873939	3R_26873939_SNP [dm3] 3R_31048217_SNP [dm6]	A	C	3.188e^-4	0.85	UPSTREAM Aph-4 INTERGENIC
3R	11530448	3R_11530448_SNP [dm3] 3R_15704726_SNP [dm6]	A	C	3.200e^-4	0.85	UTR_5_PRIME CG5404
2L	4340958	2L_4340958_SNP [dm3] 2L_4340958_SNP [dm6]	T	G	3.206e^-4	0.85	INTRON Atet
2L	9282097	2L_9282097_SNP [dm3] 2L_9282097_SNP [dm6]	G	T	3.214e^-4	0.85	INTRON Ggamma30A
2L	19917611	2L_19917611_SNP [dm3] 2L_19917611_SNP [dm6]	G	A	3.221e^-4	0.85	UPSTREAM sick INTRON sick	TF binding site mE1_TFBS_Trl
X	7605070	X_7605070_SNP [dm3] X_7711037_SNP [dm6]	A	G	3.223e^-4	0.85	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	7567871	2L_7567871_SNP [dm3] 2L_7567871_SNP [dm6]	A	C	3.231e^-4	0.85	INTRON RapGAP1
2L	12319992	2L_12319992_SNP [dm3] 2L_12319992_SNP [dm6]	C	T	3.236e^-4	0.85	INTERGENIC
2L	17866773	2L_17866773_SNP [dm3] 2L_17866773_SNP [dm6]	C	G	3.238e^-4	0.85	INTRON CadN2
2L	17886768	2L_17886768_SNP [dm3] 2L_17886768_SNP [dm6]	G	C	3.238e^-4	0.85	INTERGENIC
2R	16060948	2R_16060948_SNP [dm3] 2R_20173443_SNP [dm6]	T	C	3.239e^-4	0.85	INTERGENIC
2L	13046378	2L_13046378_SNP [dm3] 2L_13046378_SNP [dm6]	A	G	3.241e^-4	0.85	INTRON CG9932
2L	9423847	2L_9423847_SNP [dm3] 2L_9423847_SNP [dm6]	G	A	3.241e^-4	0.85	SYNONYMOUS_CODING Mco1	TF binding site mE1_TFBS_sens
3R	9744056	3R_9744056_SNP [dm3] 3R_13918334_SNP [dm6]	T	C	3.244e^-4	0.85	INTERGENIC
3L	4667899	3L_4667899_SNP [dm3] 3L_4667899_SNP [dm6]	C	T	3.245e^-4	0.85	UPSTREAM CG32236 INTRON axo	TF binding site BDTNP1_TFBS_twi
2R	9107654	2R_9107654_SNP [dm3] 2R_13220149_SNP [dm6]	G	C	3.247e^-4	0.85	NON_SYNONYMOUS_CODING CG4646 UPSTREAM CG4630 & 1 other DOWNSTREAM Fsn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	7567966	2L_7567966_SNP [dm3] 2L_7567966_SNP [dm6]	A	T	3.249e^-4	0.85	INTRON RapGAP1
2L	4811831	2L_4811831_SNP [dm3] 2L_4811831_SNP [dm6]	T	C	3.249e^-4	0.85	EXON CR45297	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	18463639	2L_18463639_SNP [dm3] 2L_18463639_SNP [dm6]	T	G	3.250e^-4	0.85	INTRON let-7-C
2R	17095599	2R_17095599_INS [dm3] 2R_21208094_INS [dm6]	G	GCA	3.252e^-4	0.85	INTRON CG44245 & 1 other
2L	11185146	2L_11185146_SNP [dm3] 2L_11185146_SNP [dm6]	G	A	3.252e^-4	0.85	INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
X	9629534	X_9629534_INS [dm3] X_9735501_INS [dm6]	G	GG	3.257e^-4	0.85	INTRON Sp1	TF binding site BDTNP1_TFBS_dl
X	16254230	X_16254230_SNP [dm3] X_16360197_SNP [dm6]	A	T	3.269e^-4	0.85	INTRON Gpi1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ttk mE1_TFBS_zfh1
2L	18354467	2L_18354467_SNP [dm3] 2L_18354467_SNP [dm6]	C	A	3.282e^-4	0.85	INTRON Fas3	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_inv
2R	14265820	2R_14265820_SNP [dm3] 2R_18378315_SNP [dm6]	T	C	3.288e^-4	0.85	DOWNSTREAM CR42736 INTERGENIC
2L	13046566	2L_13046566_SNP [dm3] 2L_13046566_SNP [dm6]	A	T	3.291e^-4	0.85	INTRON CG9932
3L	2662312	3L_2662312_SNP [dm3] 3L_2662312_SNP [dm6]	T	C	3.293e^-4	0.85	DOWNSTREAM CG33233 INTRON Fife & 1 other
2L	10826259	2L_10826259_SNP [dm3] 2L_10826259_SNP [dm6]	C	G	3.297e^-4	0.85	INTRON Nos
3L	22840699	3L_22840699_SNP [dm3] 3L_22847599_SNP [dm6]	C	G	3.300e^-4	0.85	DOWNSTREAM tRNA:CR32460 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9167543	2L_9167543_SNP [dm3] 2L_9167543_SNP [dm6]	C	G	3.306e^-4	0.85	INTRON tai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	18113250	2L_18113250_SNP [dm3] 2L_18113250_SNP [dm6]	A	G	3.308e^-4	0.85	UPSTREAM CG44476 INTERGENIC
2L	232148	2L_232148_SNP [dm3] 2L_232148_SNP [dm6]	T	G	3.315e^-4	0.85	UPSTREAM CG13693 DOWNSTREAM snoRNA:kis-a INTRON kis
2L	232153	2L_232153_SNP [dm3] 2L_232153_SNP [dm6]	T	G	3.315e^-4	0.85	UPSTREAM CG13693 DOWNSTREAM snoRNA:kis-a INTRON kis
2L	985082	2L_985082_SNP [dm3] 2L_985082_SNP [dm6]	G	A	3.323e^-4	0.85	INTERGENIC
2R	14266868	2R_14266868_SNP [dm3] 2R_18379363_SNP [dm6]	A	G	3.328e^-4	0.85	INTERGENIC	TF binding site mE1_TFBS_cad
3R	2578332	3R_2578332_SNP [dm3] 3R_6752610_SNP [dm6]	C	T	3.331e^-4	0.85	DOWNSTREAM zen INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	483062	3L_483062_SNP [dm3] 3L_483062_SNP [dm6]	C	T	3.334e^-4	0.85	INTRON klar
2L	19901699	2L_19901699_DEL [dm3] 2L_19901699_DEL [dm6]	ACGGA	A	3.344e^-4	0.85	INTRON sick
3L	12009306	3L_12009306_DEL [dm3] 3L_12016206_DEL [dm6]	AC	A	3.348e^-4	0.85	INTRON rols	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	177565	2L_177565_SNP [dm3] 2L_177565_SNP [dm6]	C	A	3.352e^-4	0.85	INTRON spen
3R	20493675	3R_20493675_SNP [dm3] 3R_24667953_SNP [dm6]	C	T	3.355e^-4	0.85	UPSTREAM slo INTRON slo	regulatory region REDfly_CRMs
2L	7357472	2L_7357472_SNP [dm3] 2L_7357472_SNP [dm6]	G	T	3.357e^-4	0.85	INTERGENIC
3R	5929714	3R_5929714_SNP [dm3] 3R_10103992_SNP [dm6]	T	C	3.360e^-4	0.85	DOWNSTREAM Fmr1 INTRON Fmr1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26918486	3R_26918486_SNP [dm3] 3R_31092764_SNP [dm6]	T	A	3.361e^-4	0.85	INTRON CG11317
3L	10962854	3L_10962854_SNP [dm3] 3L_10969754_SNP [dm6]	G	A	3.361e^-4	0.85	INTERGENIC
X	19255744	X_19255744_SNP [dm3] X_19361711_SNP [dm6]	T	C	3.362e^-4	0.85	INTRON kek5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	13099437	2L_13099437_SNP [dm3] 2L_13099437_SNP [dm6]	A	T	3.365e^-4	0.85	INTERGENIC
2R	16731526	2R_16731526_SNP [dm3] 2R_20844021_SNP [dm6]	T	A	3.374e^-4	0.85	INTERGENIC
2L	3177085	2L_3177085_SNP [dm3] 2L_3177085_SNP [dm6]	T	C	3.382e^-4	0.85	INTRON CG34393	TF binding site BDTNP1_TFBS_da
3L	2963355	3L_2963355_SNP [dm3] 3L_2963355_SNP [dm6]	C	T	3.383e^-4	0.85	SYNONYMOUS_CODING Or63a UTR_3_PRIME Or63a
2R	9091734	2R_9091734_SNP [dm3] 2R_13204229_SNP [dm6]	G	C	3.384e^-4	0.85	SYNONYMOUS_CODING lat UTR_3_PRIME CG34315	TF binding site mE1_TFBS_cad
2R	8521816	2R_8521816_SNP [dm3] 2R_12634311_SNP [dm6]	A	C	3.389e^-4	0.85	SYNONYMOUS_CODING CG33671 UTR_3_PRIME CG33672 DOWNSTREAM CG33792 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	18409706	3L_18409706_SNP [dm3] 3L_18416606_SNP [dm6]	A	T	3.391e^-4	0.85	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	5301999	3L_5301999_SNP [dm3] 3L_5308899_SNP [dm6]	G	A	3.395e^-4	0.85	INTERGENIC
3L	13366732	3L_13366732_SNP [dm3] 3L_13373632_SNP [dm6]	C	G	3.395e^-4	0.85	INTERGENIC
2R	15766219	2R_15766219_SNP [dm3] 2R_19878714_SNP [dm6]	T	A	3.403e^-4	0.851	DOWNSTREAM CG13872 INTERGENIC
3L	17528963	3L_17528963_SNP [dm3] 3L_17535863_SNP [dm6]	G	T	3.408e^-4	0.851	INTRON Nedd4
2R	19003472	2R_19003472_SNP [dm3] 2R_23115949_SNP [dm6]	C	T	3.415e^-4	0.852	INTERGENIC
3L	18934330	3L_18934330_DEL [dm3] 3L_18941230_DEL [dm6]	TGGAATTTCGGCAACAAAAT...	T	3.425e^-4	0.853	INTRON CG32204
X	17231529	X_17231529_SNP [dm3] X_17337496_SNP [dm6]	T	C	3.438e^-4	0.854	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	21947315	X_21947315_MNP [dm3] X_22545479_MNP [dm6]	TAA	AGG	3.441e^-4	0.854	INTERGENIC	transposable element FlyBase
2L	11703049	2L_11703049_SNP [dm3] 2L_11703049_SNP [dm6]	G	A	3.442e^-4	0.854	INTERGENIC
X	15868123	X_15868123_DEL [dm3] X_15974090_DEL [dm6]	TTGAAAT	T	3.472e^-4	0.857	UPSTREAM mmd & 1 other DOWNSTREAM CR45527 INTERGENIC
3L	14685858	3L_14685858_SNP [dm3] 3L_14692758_SNP [dm6]	T	C	3.480e^-4	0.857	DOWNSTREAM CG13477 INTRON ome
2L	13046565	2L_13046565_SNP [dm3] 2L_13046565_SNP [dm6]	A	C	3.481e^-4	0.857	INTRON CG9932
3R	25293706	3R_25293706_SNP [dm3] 3R_29467984_SNP [dm6]	C	T	3.482e^-4	0.857	INTRON Ptp99A
3R	17931845	3R_17931845_SNP [dm3] 3R_22106123_SNP [dm6]	C	T	3.483e^-4	0.857	DOWNSTREAM CG13407 INTRON CG5778
2L	16648856	2L_16648856_SNP [dm3] 2L_16648856_SNP [dm6]	G	A	3.486e^-4	0.857	INTRON CG42389
2L	18263144	2L_18263144_SNP [dm3] 2L_18263144_SNP [dm6]	C	A	3.501e^-4	0.857	UPSTREAM CR44901 INTRON CG42750
2L	7615240	2L_7615240_SNP [dm3] 2L_7615240_SNP [dm6]	G	A	3.501e^-4	0.857	SYNONYMOUS_CODING CG6739
2L	2951227	2L_2951227_SNP [dm3] 2L_2951227_SNP [dm6]	G	A	3.506e^-4	0.857	SYNONYMOUS_CODING lilli	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11861950	3L_11861950_SNP [dm3] 3L_11868850_SNP [dm6]	C	T	3.511e^-4	0.857	INTRON CG44837
2L	4508507	2L_4508507_SNP [dm3] 2L_4508507_SNP [dm6]	G	C	3.515e^-4	0.857	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_chinmo
3R	18447072	3R_18447072_SNP [dm3] 3R_22621350_SNP [dm6]	C	G	3.522e^-4	0.857	NON_SYNONYMOUS_CODING loco	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4426220	3L_4426220_SNP [dm3] 3L_4426220_SNP [dm6]	C	T	3.526e^-4	0.857	SYNONYMOUS_CODING CG15020
2L	13198313	2L_13198313_SNP [dm3] 2L_13198313_SNP [dm6]	T	A	3.528e^-4	0.857	INTRON CG16972	TF binding site mE1_TFBS_cad
X	7605270	X_7605270_SNP [dm3] X_7711237_SNP [dm6]	G	A	3.544e^-4	0.857	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	12593820	2L_12593820_SNP [dm3] 2L_12593820_SNP [dm6]	G	A	3.547e^-4	0.857	UTR_5_PRIME nub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	11969999	2L_11969999_SNP [dm3] 2L_11969999_SNP [dm6]	A	G	3.558e^-4	0.857	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	21947958	X_21947958_SNP [dm3] X_22546122_SNP [dm6]	A	C	3.564e^-4	0.857	UPSTREAM CG17601 INTERGENIC	TF binding site mE1_TFBS_kn
2R	15938787	2R_15938787_SNP [dm3] 2R_20051282_SNP [dm6]	A	G	3.573e^-4	0.857	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
X	7498119	X_7498119_DEL [dm3] X_7604086_DEL [dm6]	CGCA	C	3.577e^-4	0.857	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA
X	20688576	X_20688576_SNP [dm3] X_20817549_SNP [dm6]	A	C	3.583e^-4	0.857	INTRON shakB
2R	16574978	2R_16574978_SNP [dm3] 2R_20687473_SNP [dm6]	A	T	3.587e^-4	0.857	UPSTREAM Gr57a INTERGENIC
3L	466196	3L_466196_SNP [dm3] 3L_466196_SNP [dm6]	A	G	3.595e^-4	0.857	INTRON klar
2R	17911887	2R_17911887_INS [dm3] 2R_22024382_INS [dm6]	T	TCT	3.599e^-4	0.857	INTRON CG34370
3L	2440462	3L_2440462_SNP [dm3] 3L_2440462_SNP [dm6]	T	G	3.603e^-4	0.857	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	17454644	3L_17454644_SNP [dm3] 3L_17461544_SNP [dm6]	G	C	3.604e^-4	0.857	INTERGENIC
3R	19041115	3R_19041115_SNP [dm3] 3R_23215393_SNP [dm6]	G	T	3.611e^-4	0.857	UPSTREAM cnc INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9437984	2L_9437984_SNP [dm3] 2L_9437984_SNP [dm6]	T	A	3.634e^-4	0.857	DOWNSTREAM RpS28-like INTRON numb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19628324	3R_19628324_SNP [dm3] 3R_23802602_SNP [dm6]	T	G	3.638e^-4	0.857	DOWNSTREAM mbc INTRON CG33111
3R	20919249	3R_20919249_SNP [dm3] 3R_25093527_SNP [dm6]	G	A	3.639e^-4	0.857	INTERGENIC
2R	7621905	2R_7621905_SNP [dm3] 2R_11734400_SNP [dm6]	C	A	3.640e^-4	0.857	INTERGENIC	TF binding site mE1_TFBS_cad
3R	5912944	3R_5912944_SNP [dm3] 3R_10087222_SNP [dm6]	A	G	3.642e^-4	0.857	INTRON CR45054	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	12991241	X_12991241_SNP [dm3] X_13097208_SNP [dm6]	T	G	3.643e^-4	0.857	INTRON CG43313	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	706936	3L_706936_SNP [dm3] 3L_706936_SNP [dm6]	T	C	3.645e^-4	0.857	SYNONYMOUS_CODING CG13895	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	16492188	3L_16492188_SNP [dm3] 3L_16499088_SNP [dm6]	A	G	3.652e^-4	0.857	SYNONYMOUS_CODING st INTRON CG43373	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8902035	3R_8902035_SNP [dm3] 3R_13076313_SNP [dm6]	C	A	3.671e^-4	0.857	SPLICE_SITE_REGION sim INTRON sim	TF binding site BDTNP1_TFBS_dl
2R	14610036	2R_14610036_SNP [dm3] 2R_18722531_SNP [dm6]	C	T	3.672e^-4	0.857	INTRON Hs3st-A
2R	9869220	2R_9869220_SNP [dm3] 2R_13981715_SNP [dm6]	G	A	3.678e^-4	0.857	SYNONYMOUS_CODING Ctf4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24465636	3R_24465636_SNP [dm3] 3R_28639914_SNP [dm6]	G	A	3.686e^-4	0.857	INTERGENIC
3L	2660554	3L_2660554_SNP [dm3] 3L_2660554_SNP [dm6]	C	T	3.686e^-4	0.857	SYNONYMOUS_CODING CG33233 UTR_3_PRIME CG33233 INTRON Fife
2L	6809091	2L_6809091_SNP [dm3] 2L_6809091_SNP [dm6]	G	A	3.687e^-4	0.857	INTERGENIC
2L	12977807	2L_12977807_SNP [dm3] 2L_12977807_SNP [dm6]	C	T	3.690e^-4	0.857	SYNONYMOUS_CODING Vha68-2 UPSTREAM Vha68-3	TF binding site mE1_TFBS_HSA
X	6727252	X_6727252_SNP [dm3] X_6833219_SNP [dm6]	A	C	3.692e^-4	0.857	UPSTREAM CG12796 INTRON nonC
3R	20401339	3R_20401339_SNP [dm3] 3R_24575617_SNP [dm6]	G	T	3.697e^-4	0.857	INTRON CG13624
2L	10697222	2L_10697222_SNP [dm3] 2L_10697222_SNP [dm6]	G	A	3.702e^-4	0.857	NON_SYNONYMOUS_CODING CG7300 EXON CR44181	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	19255741	X_19255741_SNP [dm3] X_19361708_SNP [dm6]	A	G	3.723e^-4	0.857	INTRON kek5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	17802734	2L_17802734_DEL [dm3] 2L_17802734_DEL [dm6]	ATTGAT	A	3.726e^-4	0.857	INTRON CadN2
2L	17802779	2L_17802779_MNP [dm3] 2L_17802779_MNP [dm6]	CCA	ATG	3.726e^-4	0.857	INTRON CadN2
2L	18249785	2L_18249785_SNP [dm3] 2L_18249785_SNP [dm6]	C	A	3.730e^-4	0.857	INTRON CG42750
2R	15168958	2R_15168958_SNP [dm3] 2R_19281453_SNP [dm6]	C	A	3.732e^-4	0.857	UTR_3_PRIME CG11906 DOWNSTREAM rib
3L	7853622	3L_7853622_SNP [dm3] 3L_7860522_SNP [dm6]	G	C	3.742e^-4	0.857	INTRON Pdp1
3R	14760051	3R_14760051_SNP [dm3] 3R_18934329_SNP [dm6]	C	T	3.749e^-4	0.857	INTRON CG42613
X	16254237	X_16254237_DEL [dm3] X_16360204_DEL [dm6]	TATT	T	3.750e^-4	0.857	INTRON Gpi1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ttk mE1_TFBS_zfh1
3L	15186215	3L_15186215_SNP [dm3] 3L_15193115_SNP [dm6]	A	C	3.753e^-4	0.857	INTERGENIC	TF binding site mE1_TFBS_cad
2R	9330520	2R_9330520_SNP [dm3] 2R_13443015_SNP [dm6]	T	C	3.753e^-4	0.857	SYNONYMOUS_CODING cnn DOWNSTREAM cnn
2L	13046396	2L_13046396_SNP [dm3] 2L_13046396_SNP [dm6]	G	A	3.756e^-4	0.857	INTRON CG9932
3L	8547748	3L_8547748_SNP [dm3] 3L_8554648_SNP [dm6]	G	T	3.764e^-4	0.857	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7853696	3L_7853696_SNP [dm3] 3L_7860596_SNP [dm6]	T	C	3.768e^-4	0.857	INTRON Pdp1
2R	9117284	2R_9117284_SNP [dm3] 2R_13229779_SNP [dm6]	C	T	3.774e^-4	0.857	SYNONYMOUS_CODING Pex13 UPSTREAM fsd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	13046568	2L_13046568_SNP [dm3] 2L_13046568_SNP [dm6]	A	T	3.780e^-4	0.857	INTRON CG9932
3L	13580991	3L_13580991_SNP [dm3] 3L_13587891_SNP [dm6]	A	G	3.788e^-4	0.857	INTRON bru-3	TF binding site mE1_TFBS_chinmo
2R	11832971	2R_11832971_SNP [dm3] 2R_15945466_SNP [dm6]	A	G	3.790e^-4	0.857	UPSTREAM mir-4919 DOWNSTREAM CG30093 INTRON Cyp4aa1
2L	20425212	2L_20425212_SNP [dm3] 2L_20425212_SNP [dm6]	A	C	3.797e^-4	0.857	UPSTREAM CG15130 & 1 other INTERGENIC
3L	5285365	3L_5285365_SNP [dm3] 3L_5292265_SNP [dm6]	T	A	3.801e^-4	0.857	INTERGENIC
3R	18541647	3R_18541647_SNP [dm3] 3R_22715925_SNP [dm6]	C	T	3.805e^-4	0.857	SYNONYMOUS_CODING wge	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17866509	2R_17866509_SNP [dm3] 2R_21979004_SNP [dm6]	C	T	3.806e^-4	0.857	SYNONYMOUS_CODING Gr58b UPSTREAM Gr58a	TF binding site mE1_TFBS_cad
2R	15814789	2R_15814789_SNP [dm3] 2R_19927284_SNP [dm6]	G	C	3.810e^-4	0.857	INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	14697195	X_14697195_SNP [dm3] X_14803162_SNP [dm6]	G	A	3.810e^-4	0.857	INTRON rut
3R	23369820	3R_23369820_SNP [dm3] 3R_27544098_SNP [dm6]	T	A	3.815e^-4	0.857	UPSTREAM Gr98c DOWNSTREAM Gr98b INTERGENIC
3R	20017058	3R_20017058_SNP [dm3] 3R_24191336_SNP [dm6]	C	T	3.820e^-4	0.857	INTRON jnj
3L	562963	3L_562963_SNP [dm3] 3L_562963_SNP [dm6]	G	T	3.823e^-4	0.857	INTRON hipk
3R	6046672	3R_6046672_SNP [dm3] 3R_10220950_SNP [dm6]	T	C	3.828e^-4	0.857	UTR_3_PRIME Syn
3L	15957253	3L_15957253_SNP [dm3] 3L_15964153_SNP [dm6]	G	A	3.831e^-4	0.857	SYNONYMOUS_CODING l_3_72Ab	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	11188759	X_11188759_SNP [dm3] X_11294726_SNP [dm6]	G	A	3.832e^-4	0.857	INTRON CG44422	TF binding site BDTNP1_TFBS_dl
3L	2545230	3L_2545230_SNP [dm3] 3L_2545230_SNP [dm6]	G	A	3.850e^-4	0.857	INTRON Spn
3L	2545235	3L_2545235_SNP [dm3] 3L_2545235_SNP [dm6]	A	T	3.850e^-4	0.857	INTRON Spn
2R	12339809	2R_12339809_SNP [dm3] 2R_16452304_SNP [dm6]	C	A	3.858e^-4	0.857	INTERGENIC
3L	12010308	3L_12010308_SNP [dm3] 3L_12017208_SNP [dm6]	A	G	3.861e^-4	0.857	INTRON rols
3L	12115929	3L_12115929_SNP [dm3] 3L_12122829_SNP [dm6]	T	G	3.863e^-4	0.857	SPLICE_SITE_REGION yps INTRON yps	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_chinmo
3L	14686168	3L_14686168_SNP [dm3] 3L_14693068_SNP [dm6]	C	G	3.866e^-4	0.857	INTRON ome
3L	13685223	3L_13685223_SNP [dm3] 3L_13692123_SNP [dm6]	T	C	3.866e^-4	0.857	INTRON bru-3
X	17895861	X_17895861_SNP [dm3] X_18001828_SNP [dm6]	G	T	3.878e^-4	0.857	INTRON Sh
X	17895909	X_17895909_SNP [dm3] X_18001876_SNP [dm6]	G	A	3.878e^-4	0.857	INTRON Sh
2R	8925229	2R_8925229_SNP [dm3] 2R_13037724_SNP [dm6]	T	C	3.888e^-4	0.857	INTERGENIC
3L	3367286	3L_3367286_SNP [dm3] 3L_3367286_SNP [dm6]	A	C	3.901e^-4	0.857	INTRON kst	TF binding site mE1_TFBS_cad
2L	4396861	2L_4396861_SNP [dm3] 2L_4396861_SNP [dm6]	T	G	3.908e^-4	0.857	SYNONYMOUS_CODING l_2_k05819
2L	6661879	2L_6661879_SNP [dm3] 2L_6661879_SNP [dm6]	T	A	3.916e^-4	0.857	UTR_3_PRIME CG11070 DOWNSTREAM CG13771	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	3973886	3L_3973886_SNP [dm3] 3L_3973886_SNP [dm6]	G	A	3.917e^-4	0.857	DOWNSTREAM CG43915 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4244802	2L_4244802_SNP [dm3] 2L_4244802_SNP [dm6]	T	A	3.918e^-4	0.857	INTERGENIC
2R	18742011	2R_18742011_SNP [dm3] 2R_22854488_SNP [dm6]	C	A	3.926e^-4	0.857	UTR_5_PRIME RpL23 UPSTREAM CG13531	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2L	15200989	2L_15200989_SNP [dm3] 2L_15200989_SNP [dm6]	A	G	3.927e^-4	0.857	UPSTREAM CG4168 DOWNSTREAM Sfp35C INTERGENIC
3R	24366215	3R_24366215_SNP [dm3] 3R_28540493_SNP [dm6]	T	C	3.930e^-4	0.857	UPSTREAM Ppn INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	598128	3L_598128_SNP [dm3] 3L_598128_SNP [dm6]	C	T	3.933e^-4	0.857	SYNONYMOUS_CODING MED14 DOWNSTREAM CG13893	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20833102	3R_20833102_SNP [dm3] 3R_25007380_SNP [dm6]	C	A	3.935e^-4	0.857	INTRON tnc
2L	17866616	2L_17866616_SNP [dm3] 2L_17866616_SNP [dm6]	C	A	3.938e^-4	0.857	INTRON CadN2
X	3546939	X_3546939_SNP [dm3] X_3652906_SNP [dm6]	C	T	3.939e^-4	0.857	INTRON AstA-R1
3L	2260288	3L_2260288_SNP [dm3] 3L_2260288_SNP [dm6]	G	A	3.941e^-4	0.857	SYNONYMOUS_CODING oxt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8581253	2L_8581253_SNP [dm3] 2L_8581253_SNP [dm6]	T	A	3.944e^-4	0.857	INTRON Sema-1a
X	9910407	X_9910407_SNP [dm3] X_10016374_SNP [dm6]	T	C	3.947e^-4	0.857	UPSTREAM Cht6 INTERGENIC
2L	13744954	2L_13744954_SNP [dm3] 2L_13744954_SNP [dm6]	A	G	3.949e^-4	0.857	INTERGENIC
X	21948241	X_21948241_DEL [dm3] X_22546405_DEL [dm6]	TCAGAAAATATATGA...	T	3.954e^-4	0.857	UPSTREAM CG17601 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	5598781	2L_5598781_INS [dm3] 2L_5598781_INS [dm6]	T	TGCGACATCACTTA...	3.955e^-4	0.857	DOWNSTREAM CG18266 INTERGENIC
3L	11414555	3L_11414555_SNP [dm3] 3L_11421455_SNP [dm6]	T	A	3.956e^-4	0.857	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	17866493	2R_17866493_SNP [dm3] 2R_21978988_SNP [dm6]	G	A	3.956e^-4	0.857	SYNONYMOUS_CODING Gr58b UPSTREAM Gr58a	TF binding site mE1_TFBS_cad
X	3959211	X_3959211_SNP [dm3] X_4065178_SNP [dm6]	G	C	3.957e^-4	0.857	INTERGENIC
3L	466147	3L_466147_SNP [dm3] 3L_466147_SNP [dm6]	G	A	3.964e^-4	0.857	INTRON klar
X	6877763	X_6877763_SNP [dm3] X_6983730_SNP [dm6]	G	C	3.966e^-4	0.857	START_GAINED ogre UTR_5_PRIME ogre UPSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	4508285	2L_4508285_SNP [dm3] 2L_4508285_SNP [dm6]	T	C	3.970e^-4	0.857	INTRON dp	TF binding site mE1_TFBS_HSA
2L	4508295	2L_4508295_SNP [dm3] 2L_4508295_SNP [dm6]	A	G	3.970e^-4	0.857	INTRON dp	TF binding site mE1_TFBS_HSA
3L	11177539	3L_11177539_SNP [dm3] 3L_11184439_SNP [dm6]	T	A	3.970e^-4	0.857	INTRON GlcAT-P
3L	3569385	3L_3569385_SNP [dm3] 3L_3569385_SNP [dm6]	T	C	3.977e^-4	0.857	INTRON Eip63E	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	17736199	3L_17736199_SNP [dm3] 3L_17743099_SNP [dm6]	A	C	3.987e^-4	0.857	DOWNSTREAM CG7460 INTRON Ccn
2L	5504674	2L_5504674_SNP [dm3] 2L_5504674_SNP [dm6]	C	A	3.993e^-4	0.857	INTERGENIC
3L	18380848	3L_18380848_SNP [dm3] 3L_18387748_SNP [dm6]	T	C	3.995e^-4	0.857	INTERGENIC
3R	25041920	3R_25041920_DEL [dm3] 3R_29216198_DEL [dm6]	AATAC	A	3.997e^-4	0.857	UPSTREAM mir-996 DOWNSTREAM mir-279 INTRON CR31044 EXON CR31044	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10678812	3L_10678812_SNP [dm3] 3L_10685712_SNP [dm6]	G	A	3.998e^-4	0.857	SYNONYMOUS_CODING simj	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6069036	3L_6069036_SNP [dm3] 3L_6075936_SNP [dm6]	C	T	3.999e^-4	0.857	SYNONYMOUS_CODING CG6610 UPSTREAM CG13295 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	13750633	2L_13750633_DEL [dm3] 2L_13750633_DEL [dm6]	AG	A	4.004e^-4	0.857	INTRON CR44846 & 1 other
2L	16756875	2L_16756875_SNP [dm3] 2L_16756875_SNP [dm6]	C	T	4.006e^-4	0.857	INTRON yellow-b
3L	4736106	3L_4736106_SNP [dm3] 3L_4736106_SNP [dm6]	T	A	4.007e^-4	0.857	INTRON RhoGEF64C
2R	8515467	2R_8515467_SNP [dm3] 2R_12627962_SNP [dm6]	T	C	4.008e^-4	0.857	DOWNSTREAM muskelin INTRON CG17760
X	7602524	X_7602524_SNP [dm3] X_7708491_SNP [dm6]	T	C	4.015e^-4	0.858	INTRON CHES-1-like & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	12565832	2L_12565832_SNP [dm3] 2L_12565832_SNP [dm6]	T	G	4.031e^-4	0.859	INTERGENIC
2R	16076469	2R_16076469_SNP [dm3] 2R_20188964_SNP [dm6]	G	C	4.032e^-4	0.859	INTERGENIC
3R	26910795	3R_26910795_SNP [dm3] 3R_31085073_SNP [dm6]	A	G	4.037e^-4	0.859	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	4579233	3L_4579233_INS [dm3] 3L_4579233_INS [dm6]	T	TG	4.056e^-4	0.861	INTRON CG42540
3L	5347733	3L_5347733_SNP [dm3] 3L_5354633_SNP [dm6]	C	G	4.064e^-4	0.861	UTR_5_PRIME lama INTRON lama	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	930406	2L_930406_SNP [dm3] 2L_930406_SNP [dm6]	T	C	4.069e^-4	0.861	SYNONYMOUS_CODING CG4341 INTRON CG4341
3L	6951900	3L_6951900_SNP [dm3] 3L_6958800_SNP [dm6]	C	T	4.072e^-4	0.861	SYNONYMOUS_CODING Surf1 UPSTREAM CG10075 DOWNSTREAM sgl	TF binding site mE1_TFBS_sens
2L	4512256	2L_4512256_SNP [dm3] 2L_4512256_SNP [dm6]	G	C	4.072e^-4	0.861	INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27337799	3R_27337799_SNP [dm3] 3R_31512077_SNP [dm6]	A	C	4.075e^-4	0.861	INTERGENIC
2L	14229214	2L_14229214_SNP [dm3] 2L_14229214_SNP [dm6]	G	A	4.075e^-4	0.861	INTRON Dyrk2	TF binding site BDTNP1_TFBS_twi
3L	4482111	3L_4482111_INS [dm3] 3L_4482111_INS [dm6]	C	CTTGA	4.081e^-4	0.861	UPSTREAM CG11350 DOWNSTREAM CG7465 INTERGENIC
3L	3264983	3L_3264983_SNP [dm3] 3L_3264983_SNP [dm6]	T	G	4.088e^-4	0.862	INTRON ckd
2R	19562818	2R_19562818_SNP [dm3] 2R_23675295_SNP [dm6]	C	A	4.108e^-4	0.862	INTRON Pde8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17498349	2L_17498349_SNP [dm3] 2L_17498349_SNP [dm6]	A	G	4.109e^-4	0.862	DOWNSTREAM CR45715 & 1 other INTRON CG15142	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	18749833	2L_18749833_SNP [dm3] 2L_18749833_SNP [dm6]	C	A	4.111e^-4	0.862	INTERGENIC
X	3239736	X_3239736_SNP [dm3] X_3345703_SNP [dm6]	G	A	4.119e^-4	0.862	INTRON CR44886	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2662470	3L_2662470_SNP [dm3] 3L_2662470_SNP [dm6]	C	T	4.119e^-4	0.862	SYNONYMOUS_CODING CG33234 DOWNSTREAM CG33233 INTRON Fife
2R	12275465	2R_12275465_SNP [dm3] 2R_16387960_SNP [dm6]	A	C	4.127e^-4	0.862	INTRON Sema-2b
2L	9430623	2L_9430623_SNP [dm3] 2L_9430623_SNP [dm6]	T	C	4.127e^-4	0.862	UPSTREAM FucTB & 1 other INTRON FucTB
X	3240390	X_3240390_SNP [dm3] X_3346357_SNP [dm6]	G	C	4.129e^-4	0.862	INTRON CR44886	TF binding site BDTNP1_TFBS_twi
3L	7510766	3L_7510766_SNP [dm3] 3L_7517666_SNP [dm6]	C	A	4.147e^-4	0.862	DOWNSTREAM CG7546 INTERGENIC
2L	17742161	2L_17742161_SNP [dm3] 2L_17742161_SNP [dm6]	G	A	4.148e^-4	0.862	INTRON CadN	TF binding site mE1_TFBS_cad
X	21099126	X_21099126_SNP [dm3] X_21228099_SNP [dm6]	A	T	4.149e^-4	0.862	INTRON CG32521
X	20598576	X_20598576_SNP [dm3] X_20727549_SNP [dm6]	C	T	4.152e^-4	0.862	INTERGENIC
3L	19219355	3L_19219355_SNP [dm3] 3L_19226255_SNP [dm6]	C	T	4.157e^-4	0.862	INTRON fz2	TF binding site mE1_TFBS_inv
3R	20501278	3R_20501278_SNP [dm3] 3R_24675556_SNP [dm6]	A	T	4.162e^-4	0.862	INTRON slo
2L	14154623	2L_14154623_DEL [dm3] 2L_14154623_DEL [dm6]	GG	G	4.167e^-4	0.862	INTRON CG17341
3L	462116	3L_462116_SNP [dm3] 3L_462116_SNP [dm6]	G	C	4.168e^-4	0.862	INTRON klar
X	13027833	X_13027833_SNP [dm3] X_13133800_SNP [dm6]	A	G	4.182e^-4	0.862	SYNONYMOUS_CODING MFS10 UTR_3_PRIME CG15717	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	1288808	X_1288808_SNP [dm3] X_1394775_SNP [dm6]	G	A	4.182e^-4	0.862	INTRON CG11448	TF binding site mE1_TFBS_chinmo
X	15505373	X_15505373_SNP [dm3] X_15611340_SNP [dm6]	A	G	4.186e^-4	0.862	INTRON sog	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15444521	X_15444521_SNP [dm3] X_15550488_SNP [dm6]	A	G	4.186e^-4	0.862	INTRON Ac13E
3R	18393439	3R_18393439_SNP [dm3] 3R_22567717_SNP [dm6]	T	A	4.190e^-4	0.862	INTERGENIC
3R	27234903	3R_27234903_SNP [dm3] 3R_31409181_SNP [dm6]	C	T	4.190e^-4	0.862	INTRON Gprk2
X	7603389	X_7603389_SNP [dm3] X_7709356_SNP [dm6]	C	A	4.195e^-4	0.862	UTR_5_PRIME CHES-1-like DOWNSTREAM CR43287	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	16137984	2R_16137984_SNP [dm3] 2R_20250479_SNP [dm6]	G	T	4.226e^-4	0.862	INTRON CG9864
3L	3349822	3L_3349822_SNP [dm3] 3L_3349822_SNP [dm6]	C	T	4.228e^-4	0.862	UPSTREAM kst INTRON kst	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11530154	3R_11530154_SNP [dm3] 3R_15704432_SNP [dm6]	G	C	4.228e^-4	0.862	UPSTREAM CG5404 INTERGENIC
3L	17736436	3L_17736436_SNP [dm3] 3L_17743336_SNP [dm6]	G	A	4.241e^-4	0.862	DOWNSTREAM CG7460 INTRON Ccn
2L	17802777	2L_17802777_SNP [dm3] 2L_17802777_SNP [dm6]	C	A	4.241e^-4	0.862	INTRON CadN2
X	12816642	X_12816642_DEL [dm3] X_12922609_DEL [dm6]	CCCCTCCCTC	C	4.243e^-4	0.862	INTRON fne
2L	19675632	2L_19675632_SNP [dm3] 2L_19675632_SNP [dm6]	C	T	4.247e^-4	0.862	INTRON Lar
2L	10905611	2L_10905611_SNP [dm3] 2L_10905611_SNP [dm6]	G	A	4.249e^-4	0.862	DOWNSTREAM CG7309 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	6455339	X_6455339_SNP [dm3] X_6561306_SNP [dm6]	G	T	4.254e^-4	0.862	SYNONYMOUS_CODING CG34417
2L	12319379	2L_12319379_SNP [dm3] 2L_12319379_SNP [dm6]	A	G	4.256e^-4	0.862	INTERGENIC
3L	1774531	3L_1774531_SNP [dm3] 3L_1774531_SNP [dm6]	C	T	4.258e^-4	0.862	SYNONYMOUS_CODING CG13933 EXON CR44351	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	17560184	2L_17560184_SNP [dm3] 2L_17560184_SNP [dm6]	T	A	4.280e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	10843505	2R_10843505_SNP [dm3] 2R_14956000_SNP [dm6]	T	A	4.282e^-4	0.862	INTRON aPKC
2L	9460806	2L_9460806_DEL [dm3] 2L_9460806_DEL [dm6]	AGAA	A	4.282e^-4	0.862	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17498345	2L_17498345_SNP [dm3] 2L_17498345_SNP [dm6]	T	C	4.283e^-4	0.862	DOWNSTREAM CR45715 & 1 other INTRON CG15142	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	10729321	2L_10729321_SNP [dm3] 2L_10729321_SNP [dm6]	G	A	4.300e^-4	0.862	UPSTREAM CG17118 DOWNSTREAM CG6431 INTRON CG6443	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	8516182	2R_8516182_SNP [dm3] 2R_12628677_SNP [dm6]	A	G	4.304e^-4	0.862	DOWNSTREAM muskelin & 1 other INTERGENIC
3L	3973902	3L_3973902_SNP [dm3] 3L_3973902_SNP [dm6]	G	C	4.314e^-4	0.862	DOWNSTREAM CG43915 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24197015	3R_24197015_SNP [dm3] 3R_28371293_SNP [dm6]	G	T	4.315e^-4	0.862	INTERGENIC
3R	2916856	3R_2916856_SNP [dm3] 3R_7091134_SNP [dm6]	A	G	4.317e^-4	0.862	INTERGENIC	TF binding site mE1_TFBS_cad transposable element FlyBase
3R	27235174	3R_27235174_SNP [dm3] 3R_31409452_SNP [dm6]	C	T	4.323e^-4	0.862	INTRON Gprk2
2R	9120298	2R_9120298_SNP [dm3] 2R_13232793_SNP [dm6]	G	A	4.334e^-4	0.862	INTRON CG4670	TF binding site BDTNP1_TFBS_sna transposable element FlyBase
3L	13196247	3L_13196247_SNP [dm3] 3L_13203147_SNP [dm6]	A	C	4.335e^-4	0.862	INTERGENIC
2L	18376189	2L_18376189_SNP [dm3] 2L_18376189_SNP [dm6]	G	A	4.337e^-4	0.862	INTRON Fas3
2L	17898294	2L_17898294_SNP [dm3] 2L_17898294_SNP [dm6]	T	C	4.348e^-4	0.862	INTERGENIC
3R	13440331	3R_13440331_SNP [dm3] 3R_17614609_SNP [dm6]	T	G	4.352e^-4	0.862	SYNONYMOUS_CODING CG14327	TF binding site mE1_TFBS_HSA
2R	9867808	2R_9867808_SNP [dm3] 2R_13980303_SNP [dm6]	T	C	4.357e^-4	0.862	UPSTREAM CG6701 DOWNSTREAM Ctf4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
X	14663321	X_14663321_SNP [dm3] X_14769288_SNP [dm6]	C	A	4.358e^-4	0.862	INTERGENIC
3L	3867811	3L_3867811_SNP [dm3] 3L_3867811_SNP [dm6]	A	T	4.361e^-4	0.862	INTERGENIC
3L	4663275	3L_4663275_SNP [dm3] 3L_4663275_SNP [dm6]	G	T	4.373e^-4	0.862	INTRON axo	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	19217897	3L_19217897_SNP [dm3] 3L_19224797_SNP [dm6]	G	A	4.378e^-4	0.862	INTRON fz2
3L	3309385	3L_3309385_INS [dm3] 3L_3309385_INS [dm6]	T	TT	4.378e^-4	0.862	UPSTREAM ZnT63C INTRON ZnT63C
3L	16508343	3L_16508343_SNP [dm3] 3L_16515243_SNP [dm6]	C	T	4.385e^-4	0.862	INTRON CG43373
2L	6752693	2L_6752693_SNP [dm3] 2L_6752693_SNP [dm6]	T	A	4.390e^-4	0.862	INTRON CG11221
3R	21165754	3R_21165754_SNP [dm3] 3R_25340032_SNP [dm6]	C	A	4.394e^-4	0.862	UTR_3_PRIME CG11902 UPSTREAM rha
2L	16461161	2L_16461161_DEL [dm3] 2L_16461161_DEL [dm6]	ACAACAA	GG	4.398e^-4	0.862	INTERGENIC	regulatory region REDfly_CRMs
3R	17614027	3R_17614027_SNP [dm3] 3R_21788305_SNP [dm6]	C	T	4.401e^-4	0.862	INTRON CASK
X	4204303	X_4204303_SNP [dm3] X_4310270_SNP [dm6]	T	C	4.402e^-4	0.862	INTERGENIC
X	7527068	X_7527068_SNP [dm3] X_7633035_SNP [dm6]	G	T	4.413e^-4	0.862	INTRON ct
3R	14759852	3R_14759852_SNP [dm3] 3R_18934130_SNP [dm6]	T	C	4.426e^-4	0.862	INTRON CG42613
3L	7853667	3L_7853667_SNP [dm3] 3L_7860567_SNP [dm6]	C	A	4.434e^-4	0.862	INTRON Pdp1
3L	17695774	3L_17695774_SNP [dm3] 3L_17702674_SNP [dm6]	C	G	4.441e^-4	0.862	INTRON Ccn
2R	16086069	2R_16086069_SNP [dm3] 2R_20198564_SNP [dm6]	C	T	4.445e^-4	0.862	INTERGENIC
X	4590321	X_4590321_SNP [dm3] X_4696288_SNP [dm6]	G	T	4.452e^-4	0.862	INTRON ctp
2R	11832961	2R_11832961_INS [dm3] 2R_15945456_INS [dm6]	T	TC	4.465e^-4	0.862	UPSTREAM mir-4919 DOWNSTREAM CG30093 INTRON Cyp4aa1
3R	971441	3R_971441_SNP [dm3] 3R_5145719_SNP [dm6]	C	T	4.469e^-4	0.862	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	16714052	2R_16714052_SNP [dm3] 2R_20826547_SNP [dm6]	A	C	4.475e^-4	0.862	DOWNSTREAM sktl INTRON insc
2R	19600759	2R_19600759_SNP [dm3] 2R_23713236_SNP [dm6]	C	T	4.479e^-4	0.862	UPSTREAM Sesn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	18607030	3L_18607030_DEL [dm3] 3L_18613930_DEL [dm6]	ATA	A	4.490e^-4	0.862	UTR_3_PRIME CG32199 INTRON CG4174 & 1 other
2L	4505836	2L_4505836_SNP [dm3] 2L_4505836_SNP [dm6]	C	T	4.494e^-4	0.862	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4506233	2L_4506233_SNP [dm3] 2L_4506233_SNP [dm6]	C	A	4.494e^-4	0.862	SYNONYMOUS_CODING dp INTRON dp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	20085034	2R_20085034_SNP [dm3] 2R_24197511_SNP [dm6]	G	A	4.500e^-4	0.862	UPSTREAM CG3356 DOWNSTREAM cN-IIIB INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA transposable element FlyBase
2L	18763788	2L_18763788_SNP [dm3] 2L_18763788_SNP [dm6]	T	C	4.503e^-4	0.862	SYNONYMOUS_CODING ham	TF binding site mE1_TFBS_cad
2R	19600758	2R_19600758_SNP [dm3] 2R_23713235_SNP [dm6]	T	A	4.508e^-4	0.862	UPSTREAM Sesn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	15642259	X_15642259_SNP [dm3] X_15748226_SNP [dm6]	G	A	4.512e^-4	0.862	SYNONYMOUS_CODING Tcp-1zeta UPSTREAM CG8239	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	16899505	3R_16899505_SNP [dm3] 3R_21073783_SNP [dm6]	A	G	4.524e^-4	0.862	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	12991191	X_12991191_SNP [dm3] X_13097158_SNP [dm6]	G	A	4.531e^-4	0.862	INTRON CG43313	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	4389846	2L_4389846_SNP [dm3] 2L_4389846_SNP [dm6]	A	C	4.532e^-4	0.862	INTRON Tps1	TF binding site mE1_TFBS_cad
3R	14677020	3R_14677020_SNP [dm3] 3R_18851298_SNP [dm6]	T	C	4.538e^-4	0.862	UPSTREAM CR45633 DOWNSTREAM CG31226 INTERGENIC
2R	9107410	2R_9107410_SNP [dm3] 2R_13219905_SNP [dm6]	A	T	4.539e^-4	0.862	UPSTREAM CG4630 & 1 other INTRON CG4646	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	12815549	X_12815549_SNP [dm3] X_12921516_SNP [dm6]	A	C	4.542e^-4	0.862	INTRON fne
X	3556328	X_3556328_SNP [dm3] X_3662295_SNP [dm6]	C	A	4.550e^-4	0.862	INTRON AstA-R1
2L	2576505	2L_2576505_SNP [dm3] 2L_2576505_SNP [dm6]	A	T	4.552e^-4	0.862	NON_SYNONYMOUS_CODING insv	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9883183	2R_9883183_SNP [dm3] 2R_13995678_SNP [dm6]	C	A	4.555e^-4	0.862	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	18063374	2R_18063374_SNP [dm3] 2R_22175869_SNP [dm6]	A	T	4.556e^-4	0.862	SYNONYMOUS_CODING CG6758 EXON CR45151	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	18741479	2R_18741479_SNP [dm3] 2R_22853956_SNP [dm6]	G	T	4.560e^-4	0.862	UPSTREAM RpL23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	20027856	3R_20027856_SNP [dm3] 3R_24202134_SNP [dm6]	G	T	4.561e^-4	0.862	INTRON twin
X	7605178	X_7605178_SNP [dm3] X_7711145_SNP [dm6]	T	A	4.569e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	19896453	3R_19896453_SNP [dm3] 3R_24070731_SNP [dm6]	T	A	4.573e^-4	0.862	INTRON 4EHP	TF binding site mE1_TFBS_cad
2L	4809460	2L_4809460_SNP [dm3] 2L_4809460_SNP [dm6]	C	A	4.576e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	7602586	X_7602586_SNP [dm3] X_7708553_SNP [dm6]	G	A	4.576e^-4	0.862	INTRON CHES-1-like EXON CR43287	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	11833282	3R_11833282_SNP [dm3] 3R_16007560_SNP [dm6]	T	A	4.577e^-4	0.862	EXON CR42839	TF binding site BDTNP1_TFBS_twi
3L	9004024	3L_9004024_SNP [dm3] 3L_9010924_SNP [dm6]	G	A	4.592e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7621889	2R_7621889_SNP [dm3] 2R_11734384_SNP [dm6]	G	A	4.593e^-4	0.862	INTERGENIC	TF binding site mE1_TFBS_cad
2L	13046368	2L_13046368_SNP [dm3] 2L_13046368_SNP [dm6]	A	C	4.598e^-4	0.862	INTRON CG9932
2R	17909721	2R_17909721_SNP [dm3] 2R_22022216_SNP [dm6]	C	T	4.608e^-4	0.862	INTRON CG34370
2L	7614682	2L_7614682_SNP [dm3] 2L_7614682_SNP [dm6]	T	C	4.608e^-4	0.862	SYNONYMOUS_CODING CG6739
2L	13385589	2L_13385589_SNP [dm3] 2L_13385589_SNP [dm6]	G	T	4.609e^-4	0.862	UTR_3_PRIME loqs UPSTREAM CR44599 DOWNSTREAM CG9293
X	6652614	X_6652614_SNP [dm3] X_6758581_SNP [dm6]	T	A	4.610e^-4	0.862	DOWNSTREAM CR43496 INTRON CG14438	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
X	7604378	X_7604378_SNP [dm3] X_7710345_SNP [dm6]	C	A	4.616e^-4	0.862	UPSTREAM CHES-1-like INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	18249634	2L_18249634_SNP [dm3] 2L_18249634_SNP [dm6]	G	A	4.619e^-4	0.862	INTRON CG42750
3R	17619164	3R_17619164_SNP [dm3] 3R_21793442_SNP [dm6]	T	A	4.621e^-4	0.862	INTRON CASK	TF binding site mE1_TFBS_cad
2R	17911429	2R_17911429_SNP [dm3] 2R_22023924_SNP [dm6]	C	G	4.623e^-4	0.862	INTRON CG34370
3L	13419491	3L_13419491_SNP [dm3] 3L_13426391_SNP [dm6]	T	C	4.623e^-4	0.862	SYNONYMOUS_CODING CG14105 UPSTREAM CG14106
X	7604771	X_7604771_INS [dm3] X_7710738_INS [dm6]	G	ATTTA	4.638e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	911878	3L_911878_SNP [dm3] 3L_911878_SNP [dm6]	G	A	4.641e^-4	0.862	UTR_3_PRIME nerfin-1	regulatory region REDfly_CRMs
X	11302961	X_11302961_SNP [dm3] X_11408928_SNP [dm6]	T	A	4.642e^-4	0.862	UTR_3_PRIME dlg1 DOWNSTREAM dlg1

By genomic position
Variant impact
Gene name

Nuclear_Mapped_Reads phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results