DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.948e^-5)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.02214

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2216 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	2670126	X_2670126_SNP [dm3] X_2776093_SNP [dm6]	T	G	1.332e^-8	0.025	INTRON kirre
X	2670124	X_2670124_SNP [dm3] X_2776091_SNP [dm6]	A	T	3.414e^-8	0.032	INTRON kirre
2L	13237450	2L_13237450_SNP [dm3] 2L_13237450_SNP [dm6]	G	A	6.614e^-8	0.041	INTRON CG5867
X	2670119	X_2670119_DEL [dm3] X_2776086_DEL [dm6]	AGCC	A	9.220e^-8	0.043	INTRON kirre
2L	13237369	2L_13237369_SNP [dm3] 2L_13237369_SNP [dm6]	A	C	8.986e^-7	0.319	INTRON CG5867
2L	13237366	2L_13237366_SNP [dm3] 2L_13237366_SNP [dm6]	T	A	1.021e^-6	0.319	INTRON CG5867
2R	17596515	2R_17596515_SNP [dm3] 2R_21709010_SNP [dm6]	T	A	1.549e^-6	0.409	DOWNSTREAM CG30403 INTRON HmgD EXON CR44749	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	20204293	2R_20204293_SNP [dm3] 2R_24316770_SNP [dm6]	A	G	1.788e^-6	0.409	INTERGENIC
2L	13237377	2L_13237377_SNP [dm3] 2L_13237377_SNP [dm6]	G	A	1.965e^-6	0.409	INTRON CG5867
X	14364751	X_14364751_SNP [dm3] X_14470718_SNP [dm6]	G	A	3.079e^-6	0.537	INTERGENIC
3L	13769604	3L_13769604_SNP [dm3] 3L_13776504_SNP [dm6]	C	A	3.379e^-6	0.537	INTRON bru-3
3L	2008057	3L_2008057_SNP [dm3] 3L_2008057_SNP [dm6]	A	T	3.477e^-6	0.537	DOWNSTREAM CR44535 INTERGENIC
3L	18947292	3L_18947292_SNP [dm3] 3L_18954192_SNP [dm6]	A	C	3.725e^-6	0.537	INTRON CG6836
2R	2051002	2R_2051002_SNP [dm3] 2R_6163497_SNP [dm6]	A	C	4.213e^-6	0.564	UPSTREAM tRNA:K2:42Ac DOWNSTREAM tRNA:N5:42Aa INTRON EcR	transposable element FlyBase
3L	497117	3L_497117_SNP [dm3] 3L_497117_SNP [dm6]	C	G	7.162e^-6	0.719	INTRON klar
3L	15932347	3L_15932347_SNP [dm3] 3L_15939247_SNP [dm6]	A	G	7.453e^-6	0.719	INTRON Pka-C3
3L	22779791	3L_22779791_INS [dm3] 3L_22786691_INS [dm6]	T	TAT	7.789e^-6	0.719	UTR_3_PRIME SPoCk
2L	20330061	2L_20330061_SNP [dm3] 2L_20330061_SNP [dm6]	T	G	7.985e^-6	0.719	INTRON spir
3L	17280378	3L_17280378_SNP [dm3] 3L_17287278_SNP [dm6]	C	T	8.796e^-6	0.719	INTERGENIC
2R	9078171	2R_9078171_DEL [dm3] 2R_13190666_DEL [dm6]	ACAGA	A	9.091e^-6	0.719	UPSTREAM seq & 2 others INTRON Kdm4B	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	13769605	3L_13769605_SNP [dm3] 3L_13776505_SNP [dm6]	T	A	9.869e^-6	0.719	INTRON bru-3
2L	4546212	2L_4546212_SNP [dm3] 2L_4546212_SNP [dm6]	G	C	1.028e^-5	0.719	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19398242	2R_19398242_SNP [dm3] 2R_23510719_SNP [dm6]	C	G	1.035e^-5	0.719	DOWNSTREAM CG3906 INTERGENIC
3L	1997139	3L_1997139_SNP [dm3] 3L_1997139_SNP [dm6]	T	C	1.083e^-5	0.719	INTERGENIC
2L	4521364	2L_4521364_SNP [dm3] 2L_4521364_SNP [dm6]	G	T	1.089e^-5	0.719	INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13237509	2L_13237509_SNP [dm3] 2L_13237509_SNP [dm6]	A	T	1.109e^-5	0.719	INTRON CG5867
2R	1405874	2R_1405874_SNP [dm3] 2R_5518369_SNP [dm6]	T	C	1.145e^-5	0.719	UPSTREAM CG30438 INTRON CG30438	transposable element FlyBase
2R	20309172	2R_20309172_SNP [dm3] 2R_24421649_SNP [dm6]	C	G	1.281e^-5	0.719	INTRON prom	TF binding site mE1_TFBS_chinmo
3L	16471811	3L_16471811_SNP [dm3] 3L_16478711_SNP [dm6]	A	C	1.304e^-5	0.719	INTRON CG33158 & 1 other
3L	17280234	3L_17280234_SNP [dm3] 3L_17287134_SNP [dm6]	T	G	1.343e^-5	0.719	INTERGENIC
3L	13769601	3L_13769601_SNP [dm3] 3L_13776501_SNP [dm6]	T	G	1.369e^-5	0.719	INTRON bru-3
3L	11187867	3L_11187867_SNP [dm3] 3L_11194767_SNP [dm6]	C	T	1.383e^-5	0.719	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi
3L	5600030	3L_5600030_DEL [dm3] 3L_5606930_DEL [dm6]	AC	A	1.388e^-5	0.719	UTR_3_PRIME mthl2 DOWNSTREAM Eaf6
2R	17203370	2R_17203370_SNP [dm3] 2R_21315865_SNP [dm6]	G	A	1.449e^-5	0.719	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad
3R	25463438	3R_25463438_SNP [dm3] 3R_29637716_SNP [dm6]	A	G	1.470e^-5	0.719	INTRON Dop1R2
X	13844759	X_13844759_SNP [dm3] X_13950726_SNP [dm6]	C	A	1.520e^-5	0.719	INTRON mamo
2R	12489138	2R_12489138_SNP [dm3] 2R_16601633_SNP [dm6]	G	A	1.543e^-5	0.719	INTRON CG8303
3L	13769594	3L_13769594_SNP [dm3] 3L_13776494_SNP [dm6]	A	T	1.585e^-5	0.719	INTRON bru-3
X	14371574	X_14371574_SNP [dm3] X_14477541_SNP [dm6]	G	T	1.600e^-5	0.719	INTRON CG9411
X	13844763	X_13844763_INS [dm3] X_13950730_INS [dm6]	C	ATGGA	1.640e^-5	0.719	INTRON mamo
2R	3908588	2R_3908588_SNP [dm3] 2R_8021083_SNP [dm6]	C	T	1.808e^-5	0.719	EXON CR45267	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	5600033	3L_5600033_SNP [dm3] 3L_5606933_SNP [dm6]	A	T	1.812e^-5	0.719	UTR_3_PRIME mthl2 DOWNSTREAM Eaf6
2L	2740559	2L_2740559_SNP [dm3] 2L_2740559_SNP [dm6]	C	T	1.838e^-5	0.719	SYNONYMOUS_CODING Hrs UPSTREAM Hrs DOWNSTREAM CG31689	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4546687	2L_4546687_SNP [dm3] 2L_4546687_SNP [dm6]	A	G	1.851e^-5	0.719	NON_SYNONYMOUS_CODING dp INTRON dp
2L	13236984	2L_13236984_SNP [dm3] 2L_13236984_SNP [dm6]	A	G	1.857e^-5	0.719	INTRON CG5867
2L	4190517	2L_4190517_SNP [dm3] 2L_4190517_SNP [dm6]	C	G	1.874e^-5	0.719	INTRON CG3714	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1608271	2L_1608271_SNP [dm3] 2L_1608271_SNP [dm6]	C	T	1.876e^-5	0.719	UTR_3_PRIME haf INTRON CG31935
2L	20330020	2L_20330020_SNP [dm3] 2L_20330020_SNP [dm6]	G	A	1.877e^-5	0.719	INTRON spir
2L	13237005	2L_13237005_INS [dm3] 2L_13237005_INS [dm6]	A	ATCTCTAAAAGTTA...	1.879e^-5	0.719	INTRON CG5867
2R	5221235	2R_5221235_SNP [dm3] 2R_9333730_SNP [dm6]	A	C	1.995e^-5	0.725	INTRON CG13954 & 1 other
3L	17280374	3L_17280374_SNP [dm3] 3L_17287274_SNP [dm6]	T	C	2.013e^-5	0.725	INTERGENIC
3L	11618712	3L_11618712_SNP [dm3] 3L_11625612_SNP [dm6]	C	T	2.040e^-5	0.725	SPLICE_SITE_REGION CG6083 UPSTREAM PCID2 INTRON CG6083
2R	1974249	2R_1974249_SNP [dm3] 2R_6086744_SNP [dm6]	T	G	2.059e^-5	0.725	INTERGENIC
2L	8788718	2L_8788718_SNP [dm3] 2L_8788718_SNP [dm6]	A	G	2.212e^-5	0.725	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21511037	X_21511037_SNP [dm3] X_21640010_SNP [dm6]	C	T	2.222e^-5	0.725	INTERGENIC
2L	13237507	2L_13237507_SNP [dm3] 2L_13237507_SNP [dm6]	T	G	2.275e^-5	0.725	INTRON CG5867
3L	7185336	3L_7185336_SNP [dm3] 3L_7192236_SNP [dm6]	T	G	2.327e^-5	0.725	INTERGENIC
2L	3432256	2L_3432256_SNP [dm3] 2L_3432256_SNP [dm6]	G	T	2.355e^-5	0.725	INTERGENIC
X	5482737	X_5482737_SNP [dm3] X_5588704_SNP [dm6]	A	G	2.383e^-5	0.725	INTERGENIC	TF binding site mE1_TFBS_inv
2L	17180166	2L_17180166_SNP [dm3] 2L_17180166_SNP [dm6]	A	T	2.408e^-5	0.725	UPSTREAM Gr36c DOWNSTREAM Gr36b INTERGENIC
2L	4170733	2L_4170733_SNP [dm3] 2L_4170733_SNP [dm6]	G	C	2.415e^-5	0.725	INTERGENIC
3L	9708125	3L_9708125_SNP [dm3] 3L_9715025_SNP [dm6]	C	A	2.436e^-5	0.725	INTRON vsg	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
X	15865050	X_15865050_INS [dm3] X_15971017_INS [dm6]	C	CC	2.471e^-5	0.725	INTRON mmd	TF binding site mE1_TFBS_HSA
X	15865052	X_15865052_SNP [dm3] X_15971019_SNP [dm6]	C	A	2.552e^-5	0.725	INTRON mmd	TF binding site mE1_TFBS_HSA
2R	12807372	2R_12807372_SNP [dm3] 2R_16919867_SNP [dm6]	T	A	2.555e^-5	0.725	INTERGENIC
2L	14213476	2L_14213476_SNP [dm3] 2L_14213476_SNP [dm6]	G	C	2.593e^-5	0.725	INTRON Dyrk2
2L	16650643	2L_16650643_SNP [dm3] 2L_16650643_SNP [dm6]	G	A	2.637e^-5	0.725	INTRON CG42389
2R	4148737	2R_4148737_SNP [dm3] 2R_8261232_SNP [dm6]	C	G	2.696e^-5	0.725	UTR_5_PRIME CG2291 DOWNSTREAM CG14759 INTRON CG2291
2R	14767049	2R_14767049_SNP [dm3] 2R_18879544_SNP [dm6]	T	C	2.716e^-5	0.725	INTRON sano	TF binding site BDTNP1_TFBS_dl
3L	5600035	3L_5600035_SNP [dm3] 3L_5606935_SNP [dm6]	A	T	2.727e^-5	0.725	UTR_3_PRIME mthl2 DOWNSTREAM Eaf6
2L	1603540	2L_1603540_SNP [dm3] 2L_1603540_SNP [dm6]	C	T	2.783e^-5	0.725	SYNONYMOUS_CODING haf INTRON CG31935
3L	17298851	3L_17298851_SNP [dm3] 3L_17305751_SNP [dm6]	T	C	2.819e^-5	0.725	INTERGENIC
3L	7621457	3L_7621457_SNP [dm3] 3L_7628357_SNP [dm6]	T	G	2.823e^-5	0.725	INTRON CG33275
2R	16968938	2R_16968938_SNP [dm3] 2R_21081433_SNP [dm6]	G	A	2.865e^-5	0.725	INTRON Treh
3L	6291176	3L_6291176_SNP [dm3] 3L_6298076_SNP [dm6]	G	A	2.900e^-5	0.725	INTERGENIC	TF binding site mE1_TFBS_cad
2R	14767655	2R_14767655_SNP [dm3] 2R_18880150_SNP [dm6]	T	A	3.100e^-5	0.765	INTRON sano
2R	6634600	2R_6634600_SNP [dm3] 2R_10747095_SNP [dm6]	C	T	3.238e^-5	0.774	INTRON CG33144
3R	25520272	3R_25520272_SNP [dm3] 3R_29694550_SNP [dm6]	T	C	3.249e^-5	0.774	INTRON dmrt99B
2R	2445086	2R_2445086_SNP [dm3] 2R_6557581_SNP [dm6]	T	A	3.291e^-5	0.774	INTRON jing
3R	5831143	3R_5831143_SNP [dm3] 3R_10005421_SNP [dm6]	G	A	3.360e^-5	0.774	SYNONYMOUS_CODING Mical UTR_3_PRIME Mical	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	9830596	3R_9830596_SNP [dm3] 3R_14004874_SNP [dm6]	C	T	3.452e^-5	0.774	INTRON rdx
X	19185275	X_19185275_SNP [dm3] X_19291242_SNP [dm6]	A	C	3.467e^-5	0.774	INTRON CG8034
3L	10237066	3L_10237066_SNP [dm3] 3L_10243966_SNP [dm6]	C	G	3.515e^-5	0.774	NON_SYNONYMOUS_CODING Or67c UPSTREAM CR44541
3L	5600037	3L_5600037_INS [dm3] 3L_5606937_INS [dm6]	G	GAA	3.517e^-5	0.774	UTR_3_PRIME mthl2 DOWNSTREAM Eaf6
3L	1196905	3L_1196905_SNP [dm3] 3L_1196905_SNP [dm6]	G	T	3.554e^-5	0.774	INTRON Aplip1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6634598	2R_6634598_SNP [dm3] 2R_10747093_SNP [dm6]	T	C	3.633e^-5	0.774	INTRON CG33144
3L	2118136	3L_2118136_INS [dm3] 3L_2118136_INS [dm6]	C	CCCCAAGAGCAG...	3.662e^-5	0.774	INTRON zormin
X	8835028	X_8835028_SNP [dm3] X_8940995_SNP [dm6]	A	G	3.696e^-5	0.774	INTRON rdgA
X	15865063	X_15865063_SNP [dm3] X_15971030_SNP [dm6]	T	C	3.724e^-5	0.774	INTRON mmd	TF binding site mE1_TFBS_HSA
X	2691554	X_2691554_SNP [dm3] X_2797521_SNP [dm6]	G	T	3.777e^-5	0.774	INTRON kirre
3L	13509969	3L_13509969_SNP [dm3] 3L_13516869_SNP [dm6]	C	A	3.838e^-5	0.774	NON_SYNONYMOUS_CODING CG10710 DOWNSTREAM Liprin-beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19381763	2R_19381763_SNP [dm3] 2R_23494240_SNP [dm6]	G	C	3.864e^-5	0.774	INTERGENIC
2L	16655186	2L_16655186_SNP [dm3] 2L_16655186_SNP [dm6]	G	T	3.894e^-5	0.774	INTRON CG42389
3L	1997206	3L_1997206_SNP [dm3] 3L_1997206_SNP [dm6]	T	C	3.908e^-5	0.774	INTERGENIC
3L	5600068	3L_5600068_INS [dm3] 3L_5606968_INS [dm6]	C	CCGTCACTTCATGATAAATA...	3.950e^-5	0.774	UTR_3_PRIME mthl2 DOWNSTREAM Eaf6
3L	3451077	3L_3451077_INS [dm3] 3L_3451077_INS [dm6]	C	CCCCTCC	3.997e^-5	0.774	INTRON eIF5B
X	3803309	X_3803309_SNP [dm3] X_3909276_SNP [dm6]	A	G	4.062e^-5	0.774	INTRON CG42541
3L	15932295	3L_15932295_SNP [dm3] 3L_15939195_SNP [dm6]	G	A	4.109e^-5	0.774	INTRON Pka-C3
X	15161323	X_15161323_SNP [dm3] X_15267290_SNP [dm6]	C	T	4.148e^-5	0.774	INTERGENIC
3L	18943582	3L_18943582_SNP [dm3] 3L_18950482_SNP [dm6]	G	A	4.206e^-5	0.774	UPSTREAM CG6836 INTERGENIC
2R	17204093	2R_17204093_SNP [dm3] 2R_21316588_SNP [dm6]	A	C	4.217e^-5	0.774	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	18708417	2R_18708417_SNP [dm3] 2R_22820912_SNP [dm6]	T	C	4.223e^-5	0.774	UPSTREAM CG42284 INTRON CG30271	TF binding site mE1_TFBS_chinmo
2L	3445638	2L_3445638_SNP [dm3] 2L_3445638_SNP [dm6]	T	C	4.313e^-5	0.774	UPSTREAM CG2772 INTERGENIC
2L	4522090	2L_4522090_SNP [dm3] 2L_4522090_SNP [dm6]	G	T	4.355e^-5	0.774	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14371575	X_14371575_SNP [dm3] X_14477542_SNP [dm6]	T	A	4.367e^-5	0.774	INTRON CG9411
3L	12300012	3L_12300012_SNP [dm3] 3L_12306912_SNP [dm6]	G	A	4.416e^-5	0.774	INTERGENIC
X	20503700	X_20503700_SNP [dm3] X_20632673_SNP [dm6]	T	C	4.464e^-5	0.774	INTERGENIC
2R	19381814	2R_19381814_SNP [dm3] 2R_23494291_SNP [dm6]	C	G	4.488e^-5	0.774	INTERGENIC
3L	11185565	3L_11185565_SNP [dm3] 3L_11192465_SNP [dm6]	C	T	4.558e^-5	0.774	INTRON GlcAT-P
3R	25520265	3R_25520265_SNP [dm3] 3R_29694543_SNP [dm6]	G	A	4.561e^-5	0.774	INTRON dmrt99B
2R	8522622	2R_8522622_SNP [dm3] 2R_12635117_SNP [dm6]	C	A	4.581e^-5	0.774	NON_SYNONYMOUS_CODING CG33671 UTR_3_PRIME CG33672 DOWNSTREAM spt4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	13868904	2L_13868904_SNP [dm3] 2L_13868904_SNP [dm6]	A	C	4.692e^-5	0.775	INTRON CenG1A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8143512	2L_8143512_SNP [dm3] 2L_8143512_SNP [dm6]	T	C	4.825e^-5	0.775	SYNONYMOUS_CODING CG42762 DOWNSTREAM CG42763 INTRON CG8552	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9320356	2R_9320356_SNP [dm3] 2R_13432851_SNP [dm6]	A	T	4.841e^-5	0.775	UPSTREAM CG30065 DOWNSTREAM tRNA:I:49Fe & 1 other INTRON CG42321	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13964446	3R_13964446_SNP [dm3] 3R_18138724_SNP [dm6]	A	G	4.860e^-5	0.775	INTERGENIC
3L	13769622	3L_13769622_SNP [dm3] 3L_13776522_SNP [dm6]	A	T	4.922e^-5	0.775	INTRON bru-3
3R	25481418	3R_25481418_SNP [dm3] 3R_29655696_SNP [dm6]	A	G	4.980e^-5	0.775	INTRON Dop1R2
2R	8518758	2R_8518758_SNP [dm3] 2R_12631253_SNP [dm6]	C	T	5.012e^-5	0.775	INTRON muskelin	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5603479	3L_5603479_SNP [dm3] 3L_5610379_SNP [dm6]	A	T	5.055e^-5	0.775	INTERGENIC
3R	25520296	3R_25520296_SNP [dm3] 3R_29694574_SNP [dm6]	T	C	5.087e^-5	0.775	INTRON dmrt99B
2R	8935613	2R_8935613_SNP [dm3] 2R_13048108_SNP [dm6]	C	A	5.098e^-5	0.775	UPSTREAM CG13323 INTERGENIC
X	20715600	X_20715600_SNP [dm3] X_20844573_SNP [dm6]	A	G	5.194e^-5	0.775	INTRON shakB
2R	17204195	2R_17204195_DEL [dm3] 2R_21316690_DEL [dm6]	TT	T	5.241e^-5	0.775	SPLICE_SITE_REGION CG9485 INTRON CG9485	TF binding site mE1_TFBS_cad
2L	2623882	2L_2623882_SNP [dm3] 2L_2623882_SNP [dm6]	G	A	5.259e^-5	0.775	INTERGENIC
X	10804647	X_10804647_DEL [dm3] X_10910614_DEL [dm6]	AA	A	5.279e^-5	0.775	INTRON CG43901	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	13795369	X_13795369_SNP [dm3] X_13901336_SNP [dm6]	C	A	5.298e^-5	0.775	INTRON mamo
2L	2748413	2L_2748413_SNP [dm3] 2L_2748413_SNP [dm6]	C	G	5.338e^-5	0.775	UTR_5_PRIME Pgk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	1999062	3L_1999062_SNP [dm3] 3L_1999062_SNP [dm6]	T	C	5.340e^-5	0.775	INTERGENIC
2L	13237061	2L_13237061_SNP [dm3] 2L_13237061_SNP [dm6]	C	A	5.400e^-5	0.775	INTRON CG5867
3L	5600029	3L_5600029_SNP [dm3] 3L_5606929_SNP [dm6]	C	G	5.449e^-5	0.775	UTR_3_PRIME mthl2 DOWNSTREAM Eaf6
2R	3902532	2R_3902532_SNP [dm3] 2R_8015027_SNP [dm6]	T	C	5.466e^-5	0.775	UPSTREAM mir-4981 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4551667	2L_4551667_SNP [dm3] 2L_4551667_SNP [dm6]	A	G	5.479e^-5	0.775	INTRON dp
2R	12807373	2R_12807373_SNP [dm3] 2R_16919868_SNP [dm6]	A	T	5.588e^-5	0.775	INTERGENIC
2R	19381807	2R_19381807_SNP [dm3] 2R_23494284_SNP [dm6]	A	G	5.673e^-5	0.775	INTERGENIC
3L	9155262	3L_9155262_SNP [dm3] 3L_9162162_SNP [dm6]	T	A	5.688e^-5	0.775	INTRON Rdl
2R	8919349	2R_8919349_SNP [dm3] 2R_13031844_SNP [dm6]	G	A	5.724e^-5	0.775	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22767588	3R_22767588_SNP [dm3] 3R_26941866_SNP [dm6]	C	G	5.794e^-5	0.775	INTRON sda	TF binding site mE1_TFBS_cad
2R	9959206	2R_9959206_SNP [dm3] 2R_14071701_SNP [dm6]	C	T	5.931e^-5	0.775	INTRON Prosap
3R	26879883	3R_26879883_SNP [dm3] 3R_31054161_SNP [dm6]	G	A	5.991e^-5	0.775	UTR_3_PRIME dco UPSTREAM l_3_03670	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	11532843	2R_11532843_SNP [dm3] 2R_15645338_SNP [dm6]	G	C	5.997e^-5	0.775	INTRON CG42524	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
X	10824225	X_10824225_SNP [dm3] X_10930192_SNP [dm6]	G	T	6.031e^-5	0.775	UPSTREAM Myo10A DOWNSTREAM CG2145 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
2L	4522918	2L_4522918_SNP [dm3] 2L_4522918_SNP [dm6]	A	G	6.045e^-5	0.775	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2537162	3L_2537162_SNP [dm3] 3L_2537162_SNP [dm6]	C	A	6.085e^-5	0.775	UPSTREAM Spn INTRON Spn	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	17548488	2L_17548488_SNP [dm3] 2L_17548488_SNP [dm6]	C	G	6.127e^-5	0.775	DOWNSTREAM CR45697 INTERGENIC
2L	16655323	2L_16655323_SNP [dm3] 2L_16655323_SNP [dm6]	G	C	6.151e^-5	0.775	INTRON CG42389
3L	1179560	3L_1179560_SNP [dm3] 3L_1179560_SNP [dm6]	G	T	6.167e^-5	0.775	INTERGENIC
2L	21148426	2L_21148426_SNP [dm3] 2L_21148426_SNP [dm6]	G	C	6.171e^-5	0.775	UTR_5_PRIME del UPSTREAM del	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	2749206	2L_2749206_SNP [dm3] 2L_2749206_SNP [dm6]	C	A	6.232e^-5	0.775	UPSTREAM Pgk INTRON Pgk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13769630	3L_13769630_SNP [dm3] 3L_13776530_SNP [dm6]	C	A	6.267e^-5	0.775	INTRON bru-3
2R	14022374	2R_14022374_SNP [dm3] 2R_18134869_SNP [dm6]	G	A	6.484e^-5	0.775	UPSTREAM Pcl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17204081	2R_17204081_SNP [dm3] 2R_21316576_SNP [dm6]	G	A	6.512e^-5	0.775	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	11422789	2R_11422789_SNP [dm3] 2R_15535284_SNP [dm6]	C	T	6.534e^-5	0.775	SYNONYMOUS_CODING CG30471
3R	13421953	3R_13421953_DEL [dm3] 3R_17596231_DEL [dm6]	TT	T	6.579e^-5	0.775	UPSTREAM CG7606 DOWNSTREAM Sgs5 INTERGENIC
X	8530809	X_8530809_SNP [dm3] X_8636776_SNP [dm6]	G	A	6.605e^-5	0.775	INTRON oc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	15993189	2R_15993189_SNP [dm3] 2R_20105684_SNP [dm6]	T	C	6.612e^-5	0.775	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	17203805	2R_17203805_SNP [dm3] 2R_21316300_SNP [dm6]	T	G	6.613e^-5	0.775	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1173331	3L_1173331_SNP [dm3] 3L_1173331_SNP [dm6]	A	G	6.622e^-5	0.775	SYNONYMOUS_CODING bab2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1590705	2L_1590705_SNP [dm3] 2L_1590705_SNP [dm6]	G	A	6.640e^-5	0.775	INTRON haf
2L	8789857	2L_8789857_SNP [dm3] 2L_8789857_SNP [dm6]	T	A	6.643e^-5	0.775	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	17197951	2L_17197951_SNP [dm3] 2L_17197951_SNP [dm6]	T	C	6.677e^-5	0.775	INTRON beat-IIIc
X	10824241	X_10824241_SNP [dm3] X_10930208_SNP [dm6]	C	G	6.736e^-5	0.775	UPSTREAM Myo10A DOWNSTREAM CG2145 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
2R	15992777	2R_15992777_SNP [dm3] 2R_20105272_SNP [dm6]	C	A	6.771e^-5	0.775	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	25579397	3R_25579397_SNP [dm3] 3R_29753675_SNP [dm6]	G	A	6.812e^-5	0.775	UTR_3_PRIME yata DOWNSTREAM yata
3L	16974674	3L_16974674_SNP [dm3] 3L_16981574_SNP [dm6]	G	A	6.837e^-5	0.775	SYNONYMOUS_CODING Exn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12086253	X_12086253_SNP [dm3] X_12192220_SNP [dm6]	G	A	6.850e^-5	0.775	INTRON Ten-a
2R	9548009	2R_9548009_DEL [dm3] 2R_13660504_DEL [dm6]	CA	C	6.912e^-5	0.775	DOWNSTREAM CG6209 INTRON fas	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12043825	3R_12043825_INS [dm3] 3R_16218103_INS [dm6]	A	AA	6.994e^-5	0.775	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
2R	4914721	2R_4914721_SNP [dm3] 2R_9027216_SNP [dm6]	A	C	7.005e^-5	0.775	INTRON CG8170
2R	13062499	2R_13062499_SNP [dm3] 2R_17174994_SNP [dm6]	A	T	7.009e^-5	0.775	INTERGENIC
X	8317421	X_8317421_SNP [dm3] X_8423388_SNP [dm6]	A	C	7.040e^-5	0.775	UTR_5_PRIME Trf2	TF binding site BDTNP1_TFBS_dl
2R	8955759	2R_8955759_SNP [dm3] 2R_13068254_SNP [dm6]	C	T	7.063e^-5	0.775	INTRON Drl-2	TF binding site mE1_TFBS_chinmo
X	14371579	X_14371579_SNP [dm3] X_14477546_SNP [dm6]	A	C	7.192e^-5	0.776	INTRON CG9411
2L	13911853	2L_13911853_SNP [dm3] 2L_13911853_SNP [dm6]	A	G	7.197e^-5	0.776	UPSTREAM Acyp DOWNSTREAM Ance-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	6775049	2L_6775049_SNP [dm3] 2L_6775049_SNP [dm6]	G	T	7.202e^-5	0.776	UPSTREAM CG17378 INTRON CG17378
X	11349981	X_11349981_SNP [dm3] X_11455948_SNP [dm6]	C	A	7.256e^-5	0.778	NON_SYNONYMOUS_CODING HP5	TF binding site mE1_TFBS_sens
3L	8316065	3L_8316065_SNP [dm3] 3L_8322965_SNP [dm6]	G	A	7.296e^-5	0.778	DOWNSTREAM CG13670 INTERGENIC
2L	13995754	2L_13995754_SNP [dm3] 2L_13995754_SNP [dm6]	G	A	7.473e^-5	0.786	INTRON rk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15993150	2R_15993150_SNP [dm3] 2R_20105645_SNP [dm6]	G	T	7.516e^-5	0.786	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
2R	11735231	2R_11735231_SNP [dm3] 2R_15847726_SNP [dm6]	T	C	7.585e^-5	0.786	UPSTREAM CG8249 & 1 other INTRON tun	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4187908	2L_4187908_SNP [dm3] 2L_4187908_SNP [dm6]	T	C	7.598e^-5	0.786	UPSTREAM lectin-24Db & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	20408442	2R_20408442_SNP [dm3] 2R_24520919_SNP [dm6]	T	C	7.705e^-5	0.786	SYNONYMOUS_CODING Ir60d UPSTREAM Ir60f DOWNSTREAM CG4612	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6665134	2R_6665134_SNP [dm3] 2R_10777629_SNP [dm6]	G	A	7.722e^-5	0.786	INTRON CG33144
3R	4273304	3R_4273304_SNP [dm3] 3R_8447582_SNP [dm6]	G	A	7.775e^-5	0.786	INTRON CG45263
X	15161322	X_15161322_SNP [dm3] X_15267289_SNP [dm6]	G	A	7.796e^-5	0.786	INTERGENIC
2L	13211892	2L_13211892_SNP [dm3] 2L_13211892_SNP [dm6]	T	C	7.816e^-5	0.786	UPSTREAM CG15482 DOWNSTREAM snRNA:U2:34ABa & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19088328	3R_19088328_SNP [dm3] 3R_23262606_SNP [dm6]	G	A	7.831e^-5	0.786	UTR_3_PRIME orb
2R	17203523	2R_17203523_SNP [dm3] 2R_21316018_SNP [dm6]	A	C	7.888e^-5	0.786	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	10804645	X_10804645_SNP [dm3] X_10910612_SNP [dm6]	C	G	7.918e^-5	0.786	INTRON CG43901	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9185996	2L_9185996_SNP [dm3] 2L_9185996_SNP [dm6]	C	A	7.925e^-5	0.786	INTRON tai	TF binding site BDTNP1_TFBS_prd
X	20715878	X_20715878_SNP [dm3] X_20844851_SNP [dm6]	A	G	8.021e^-5	0.787	INTRON shakB
2R	10710003	2R_10710003_INS [dm3] 2R_14822498_INS [dm6]	A	ACA	8.115e^-5	0.787	INTERGENIC
2R	19490606	2R_19490606_SNP [dm3] 2R_23603083_SNP [dm6]	A	G	8.130e^-5	0.787	SYNONYMOUS_CODING CG5398 UPSTREAM CG43209 DOWNSTREAM CG17664	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14637712	X_14637712_SNP [dm3] X_14743679_SNP [dm6]	T	C	8.182e^-5	0.787	INTRON NetB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6873520	3R_6873520_SNP [dm3] 3R_11047798_SNP [dm6]	A	C	8.202e^-5	0.787	SYNONYMOUS_CODING CG34114	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7503782	2L_7503782_SNP [dm3] 2L_7503782_SNP [dm6]	G	A	8.280e^-5	0.787	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
3L	17254746	3L_17254746_SNP [dm3] 3L_17261646_SNP [dm6]	C	T	8.292e^-5	0.787	INTRON CR43870
2L	13248636	2L_13248636_SNP [dm3] 2L_13248636_SNP [dm6]	A	C	8.324e^-5	0.787	INTRON CG16820
2R	2396496	2R_2396496_SNP [dm3] 2R_6508991_SNP [dm6]	G	C	8.341e^-5	0.787	INTRON jing EXON CR45127	TF binding site mE1_TFBS_cad
2L	17186276	2L_17186276_SNP [dm3] 2L_17186276_SNP [dm6]	T	A	8.413e^-5	0.787	INTERGENIC
2L	4546219	2L_4546219_SNP [dm3] 2L_4546219_SNP [dm6]	G	T	8.428e^-5	0.787	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12308096	2L_12308096_SNP [dm3] 2L_12308096_SNP [dm6]	C	T	8.437e^-5	0.787	INTRON aret
3L	12279964	3L_12279964_SNP [dm3] 3L_12286864_SNP [dm6]	T	C	8.510e^-5	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	13769635	3L_13769635_SNP [dm3] 3L_13776535_SNP [dm6]	C	T	8.547e^-5	0.787	INTRON bru-3
2L	13236980	2L_13236980_SNP [dm3] 2L_13236980_SNP [dm6]	A	G	8.564e^-5	0.787	INTRON CG5867
3L	5648500	3L_5648500_SNP [dm3] 3L_5655400_SNP [dm6]	A	G	8.644e^-5	0.788	INTRON lin-28	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18839366	2R_18839366_SNP [dm3] 2R_22951843_SNP [dm6]	T	C	8.676e^-5	0.788	EXON CR32835
2R	4917049	2R_4917049_SNP [dm3] 2R_9029544_SNP [dm6]	T	A	8.727e^-5	0.788	INTRON CG8170
X	11056995	X_11056995_SNP [dm3] X_11162962_SNP [dm6]	T	C	8.766e^-5	0.788	UTR_3_PRIME Dlic
X	13795370	X_13795370_SNP [dm3] X_13901337_SNP [dm6]	T	C	8.811e^-5	0.788	INTRON mamo
2L	2331644	2L_2331644_DEL [dm3] 2L_2331644_DEL [dm6]	TTTGTGCTTTACTCCAT...	T	8.821e^-5	0.788	INTRON CG9967 & 1 other
3L	10534584	3L_10534584_SNP [dm3] 3L_10541484_SNP [dm6]	G	T	8.998e^-5	0.8	INTRON A2bp1
2L	21124223	2L_21124223_SNP [dm3] 2L_21124223_SNP [dm6]	C	T	9.148e^-5	0.801	INTRON Nhe2
3R	25578766	3R_25578766_SNP [dm3] 3R_29753044_SNP [dm6]	C	T	9.166e^-5	0.801	UTR_3_PRIME yata	TF binding site mE1_TFBS_cad
X	13844755	X_13844755_SNP [dm3] X_13950722_SNP [dm6]	T	A	9.181e^-5	0.801	INTRON mamo
3L	12035226	3L_12035226_SNP [dm3] 3L_12042126_SNP [dm6]	C	T	9.267e^-5	0.801	UPSTREAM CG6793 INTRON rols
2L	2743731	2L_2743731_SNP [dm3] 2L_2743731_SNP [dm6]	A	G	9.272e^-5	0.801	SYNONYMOUS_CODING CG9961 UTR_3_PRIME CG9961 DOWNSTREAM Hrs
2L	18248824	2L_18248824_SNP [dm3] 2L_18248824_SNP [dm6]	C	T	9.281e^-5	0.801	INTRON CG42750
2L	1604646	2L_1604646_DEL [dm3] 2L_1604646_DEL [dm6]	TT	T	9.311e^-5	0.801	INTRON CG31935 & 1 other
3L	12288508	3L_12288508_SNP [dm3] 3L_12295408_SNP [dm6]	T	C	9.369e^-5	0.801	INTRON CG4328
2R	8521034	2R_8521034_SNP [dm3] 2R_12633529_SNP [dm6]	T	A	9.407e^-5	0.801	UPSTREAM spt4 DOWNSTREAM CG33671 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z
2L	8143887	2L_8143887_SNP [dm3] 2L_8143887_SNP [dm6]	A	G	9.491e^-5	0.801	SYNONYMOUS_CODING CG42762 DOWNSTREAM CG42763 INTRON CG8552	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1620878	2L_1620878_SNP [dm3] 2L_1620878_SNP [dm6]	G	C	9.529e^-5	0.801	EXON CR44603	TF binding site BDTNP1_TFBS_dl
2L	1140456	2L_1140456_SNP [dm3] 2L_1140456_SNP [dm6]	C	T	9.650e^-5	0.801	UTR_3_PRIME CG4577
X	8221262	X_8221262_SNP [dm3] X_8327229_SNP [dm6]	C	T	9.763e^-5	0.801	INTRON nAChRalpha3
3L	6022549	3L_6022549_SNP [dm3] 3L_6029449_SNP [dm6]	G	A	9.887e^-5	0.801	INTERGENIC
2R	4917095	2R_4917095_SNP [dm3] 2R_9029590_SNP [dm6]	T	A	9.923e^-5	0.801	INTRON CG8170
2R	14767007	2R_14767007_SNP [dm3] 2R_18879502_SNP [dm6]	C	T	9.971e^-5	0.801	INTRON sano	TF binding site BDTNP1_TFBS_dl
2L	1608452	2L_1608452_SNP [dm3] 2L_1608452_SNP [dm6]	T	C	9.990e^-5	0.801	DOWNSTREAM haf INTRON CG31935
2L	11187187	2L_11187187_SNP [dm3] 2L_11187187_SNP [dm6]	T	A	1.009e^-4	0.801	INTRON Ca-beta
2L	10494711	2L_10494711_SNP [dm3] 2L_10494711_SNP [dm6]	T	C	1.020e^-4	0.801	SYNONYMOUS_CODING Myo31DF
3L	13510277	3L_13510277_SNP [dm3] 3L_13517177_SNP [dm6]	C	T	1.023e^-4	0.801	SYNONYMOUS_CODING CG10710 DOWNSTREAM Liprin-beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16656208	2L_16656208_SNP [dm3] 2L_16656208_SNP [dm6]	A	T	1.026e^-4	0.801	UPSTREAM CG42389 INTRON CG42389
2L	13236968	2L_13236968_SNP [dm3] 2L_13236968_SNP [dm6]	T	C	1.030e^-4	0.801	INTRON CG5867
X	10824226	X_10824226_SNP [dm3] X_10930193_SNP [dm6]	T	A	1.033e^-4	0.801	UPSTREAM Myo10A DOWNSTREAM CG2145 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
2R	17596631	2R_17596631_SNP [dm3] 2R_21709126_SNP [dm6]	T	C	1.033e^-4	0.801	DOWNSTREAM CG30403 INTRON HmgD EXON CR44749	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	16547027	3L_16547027_SNP [dm3] 3L_16553927_SNP [dm6]	C	T	1.040e^-4	0.801	INTERGENIC
2R	8522653	2R_8522653_SNP [dm3] 2R_12635148_SNP [dm6]	C	T	1.045e^-4	0.801	SYNONYMOUS_CODING CG33671 UTR_3_PRIME CG33672 DOWNSTREAM spt4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	26881168	3R_26881168_SNP [dm3] 3R_31055446_SNP [dm6]	T	C	1.050e^-4	0.801	UTR_3_PRIME dco
2L	3852158	2L_3852158_SNP [dm3] 2L_3852158_SNP [dm6]	G	A	1.051e^-4	0.801	EXON CR45451	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	10236960	3L_10236960_SNP [dm3] 3L_10243860_SNP [dm6]	A	T	1.054e^-4	0.801	UPSTREAM CR44541 INTRON Or67c
2R	15120025	2R_15120025_SNP [dm3] 2R_19232520_SNP [dm6]	A	G	1.060e^-4	0.801	INTRON cora	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13493241	2R_13493241_SNP [dm3] 2R_17605736_SNP [dm6]	G	A	1.065e^-4	0.801	DOWNSTREAM tRNA:CR30231 INTRON CG10936
3L	7270930	3L_7270930_SNP [dm3] 3L_7277830_SNP [dm6]	C	A	1.069e^-4	0.801	INTRON unc-13-4A
2L	16662044	2L_16662044_SNP [dm3] 2L_16662044_SNP [dm6]	G	T	1.074e^-4	0.801	UTR_3_PRIME CG42389 DOWNSTREAM CG42389
3R	14837810	3R_14837810_SNP [dm3] 3R_19012088_SNP [dm6]	T	C	1.075e^-4	0.801	INTRON gukh	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_inv
X	14633106	X_14633106_SNP [dm3] X_14739073_SNP [dm6]	C	T	1.081e^-4	0.801	INTRON NetB
2L	1602587	2L_1602587_SNP [dm3] 2L_1602587_SNP [dm6]	C	T	1.085e^-4	0.801	NON_SYNONYMOUS_CODING haf INTRON CG31935
2R	19490618	2R_19490618_SNP [dm3] 2R_23603095_SNP [dm6]	G	A	1.089e^-4	0.801	SYNONYMOUS_CODING CG5398 UPSTREAM CG43209 DOWNSTREAM CG17664	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9304488	3L_9304488_SNP [dm3] 3L_9311388_SNP [dm6]	G	C	1.091e^-4	0.801	INTERGENIC
3L	13509194	3L_13509194_SNP [dm3] 3L_13516094_SNP [dm6]	T	G	1.093e^-4	0.801	UTR_3_PRIME Liprin-beta DOWNSTREAM CG10710
2L	16657094	2L_16657094_SNP [dm3] 2L_16657094_SNP [dm6]	G	A	1.094e^-4	0.801	UPSTREAM CG42389 INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2R	11903922	2R_11903922_SNP [dm3] 2R_16016417_SNP [dm6]	A	G	1.097e^-4	0.801	SYNONYMOUS_CODING CG8397 DOWNSTREAM Rrp42
3L	6533942	3L_6533942_SNP [dm3] 3L_6540842_SNP [dm6]	G	A	1.098e^-4	0.801	INTRON sfl
3R	7472362	3R_7472362_INS [dm3] 3R_11646640_INS [dm6]	A	AA	1.100e^-4	0.801	INTRON Csk
3R	24985375	3R_24985375_INS [dm3] 3R_29159653_INS [dm6]	A	AGACAGTGTCAT...	1.107e^-4	0.801	INTRON CG11897
X	13844767	X_13844767_SNP [dm3] X_13950734_SNP [dm6]	T	C	1.113e^-4	0.801	INTRON mamo
3L	11525027	3L_11525027_SNP [dm3] 3L_11531927_SNP [dm6]	T	A	1.117e^-4	0.801	INTRON Mob2
2L	13959367	2L_13959367_SNP [dm3] 2L_13959367_SNP [dm6]	A	G	1.120e^-4	0.801	INTRON NimA
2L	16656973	2L_16656973_SNP [dm3] 2L_16656973_SNP [dm6]	T	A	1.123e^-4	0.801	UPSTREAM CG42389 INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Ubx
3R	9743884	3R_9743884_SNP [dm3] 3R_13918162_SNP [dm6]	T	C	1.129e^-4	0.801	INTERGENIC
2L	1610214	2L_1610214_SNP [dm3] 2L_1610214_SNP [dm6]	G	C	1.138e^-4	0.801	SYNONYMOUS_CODING CG31935	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	1179554	3L_1179554_SNP [dm3] 3L_1179554_SNP [dm6]	T	A	1.145e^-4	0.801	INTERGENIC
3L	13769591	3L_13769591_SNP [dm3] 3L_13776491_SNP [dm6]	C	T	1.149e^-4	0.801	INTRON bru-3
2R	8519759	2R_8519759_SNP [dm3] 2R_12632254_SNP [dm6]	C	T	1.150e^-4	0.801	UTR_5_PRIME muskelin UPSTREAM CG33792	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	16582653	2R_16582653_SNP [dm3] 2R_20695148_SNP [dm6]	T	G	1.156e^-4	0.801	INTERGENIC
3L	1997143	3L_1997143_SNP [dm3] 3L_1997143_SNP [dm6]	A	T	1.159e^-4	0.801	INTERGENIC
2R	12489109	2R_12489109_SNP [dm3] 2R_16601604_SNP [dm6]	A	G	1.162e^-4	0.801	INTRON CG8303
X	14663564	X_14663564_SNP [dm3] X_14769531_SNP [dm6]	A	G	1.171e^-4	0.801	INTERGENIC
X	19482225	X_19482225_INS [dm3] X_19588192_INS [dm6]	TT	GAC	1.172e^-4	0.801	INTRON CG14219
X	12882405	X_12882405_DEL [dm3] X_12988372_DEL [dm6]	TGCT	T	1.176e^-4	0.801	UPSTREAM rad INTERGENIC
X	17114147	X_17114147_SNP [dm3] X_17220114_SNP [dm6]	A	T	1.178e^-4	0.801	DOWNSTREAM CG12998 INTERGENIC
3L	7561325	3L_7561325_SNP [dm3] 3L_7568225_SNP [dm6]	T	C	1.181e^-4	0.801	SYNONYMOUS_CODING frac
3R	22623248	3R_22623248_SNP [dm3] 3R_26797526_SNP [dm6]	G	A	1.181e^-4	0.801	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	14663594	X_14663594_SNP [dm3] X_14769561_SNP [dm6]	C	T	1.203e^-4	0.801	INTERGENIC
3L	13506321	3L_13506321_DEL [dm3] 3L_13513221_DEL [dm6]	AATTAAAATG	T	1.206e^-4	0.801	UPSTREAM Liprin-beta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3L	13507220	3L_13507220_SNP [dm3] 3L_13514120_SNP [dm6]	C	T	1.206e^-4	0.801	NON_SYNONYMOUS_CODING Liprin-beta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv mE1_TFBS_sens
3L	13509977	3L_13509977_SNP [dm3] 3L_13516877_SNP [dm6]	C	T	1.206e^-4	0.801	SYNONYMOUS_CODING CG10710 DOWNSTREAM Liprin-beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13510865	3L_13510865_SNP [dm3] 3L_13517765_SNP [dm6]	C	T	1.206e^-4	0.801	SYNONYMOUS_CODING CG10710	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13510972	3L_13510972_SNP [dm3] 3L_13517872_SNP [dm6]	G	T	1.206e^-4	0.801	SYNONYMOUS_CODING CG10710	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13239267	2R_13239267_SNP [dm3] 2R_17351762_SNP [dm6]	G	C	1.207e^-4	0.801	INTRON mbl
2R	9638486	2R_9638486_SNP [dm3] 2R_13750981_SNP [dm6]	A	G	1.211e^-4	0.801	INTERGENIC
2L	10494324	2L_10494324_SNP [dm3] 2L_10494324_SNP [dm6]	G	A	1.212e^-4	0.801	SYNONYMOUS_CODING Myo31DF	TF binding site mE1_TFBS_sens
3L	9155244	3L_9155244_SNP [dm3] 3L_9162144_SNP [dm6]	T	G	1.221e^-4	0.801	INTRON Rdl
2L	4522813	2L_4522813_SNP [dm3] 2L_4522813_SNP [dm6]	G	A	1.225e^-4	0.801	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	1401237	2R_1401237_SNP [dm3] 2R_5513732_SNP [dm6]	G	A	1.235e^-4	0.801	INTRON CG30438	transposable element FlyBase
3R	7460757	3R_7460757_SNP [dm3] 3R_11635035_SNP [dm6]	A	T	1.235e^-4	0.801	INTRON Csk
2L	20075713	2L_20075713_SNP [dm3] 2L_20075713_SNP [dm6]	C	G	1.242e^-4	0.801	UPSTREAM neb & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	14358766	2R_14358766_SNP [dm3] 2R_18471261_SNP [dm6]	T	C	1.260e^-4	0.801	INTRON CG30116
2L	16656228	2L_16656228_SNP [dm3] 2L_16656228_SNP [dm6]	C	T	1.269e^-4	0.801	UPSTREAM CG42389 INTRON CG42389
3L	3493284	3L_3493284_SNP [dm3] 3L_3493284_SNP [dm6]	C	T	1.274e^-4	0.801	INTRON CG42324	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	5780331	2L_5780331_SNP [dm3] 2L_5780331_SNP [dm6]	G	A	1.278e^-4	0.801	INTRON CG9171	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	2004922	3L_2004922_INS [dm3] 3L_2004922_INS [dm6]	T	TGGTGTGT	1.279e^-4	0.801	DOWNSTREAM CG42841 INTRON CG42841
2L	16966449	2L_16966449_SNP [dm3] 2L_16966449_SNP [dm6]	G	A	1.286e^-4	0.801	DOWNSTREAM CR45285 INTERGENIC
3L	6527351	3L_6527351_SNP [dm3] 3L_6534251_SNP [dm6]	C	T	1.293e^-4	0.801	INTRON sfl
X	14371581	X_14371581_SNP [dm3] X_14477548_SNP [dm6]	A	C	1.294e^-4	0.801	INTRON CG9411
2L	13057169	2L_13057169_SNP [dm3] 2L_13057169_SNP [dm6]	G	T	1.295e^-4	0.801	INTRON CG9932
3L	18322089	3L_18322089_INS [dm3] 3L_18328989_INS [dm6]	C	CC	1.298e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	3911095	2R_3911095_SNP [dm3] 2R_8023590_SNP [dm6]	C	T	1.302e^-4	0.801	EXON CR45267
2R	10843629	2R_10843629_SNP [dm3] 2R_14956124_SNP [dm6]	G	A	1.309e^-4	0.801	INTRON aPKC
2L	16657332	2L_16657332_SNP [dm3] 2L_16657332_SNP [dm6]	A	T	1.314e^-4	0.801	START_GAINED CG42389 UTR_5_PRIME CG42389 INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
2R	8518222	2R_8518222_SNP [dm3] 2R_12630717_SNP [dm6]	C	T	1.318e^-4	0.801	SYNONYMOUS_CODING muskelin	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	20011414	3R_20011414_DEL [dm3] 3R_24185692_DEL [dm6]	ACCGCGAAAACGTGTGTCTA...	A	1.320e^-4	0.801	UPSTREAM CHORD INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	16656998	2L_16656998_SNP [dm3] 2L_16656998_SNP [dm6]	G	A	1.321e^-4	0.801	UPSTREAM CG42389 INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Ubx
X	14663685	X_14663685_SNP [dm3] X_14769652_SNP [dm6]	A	G	1.330e^-4	0.801	INTERGENIC
X	6157570	X_6157570_SNP [dm3] X_6263537_SNP [dm6]	T	G	1.340e^-4	0.801	INTRON schlank
2L	9281511	2L_9281511_SNP [dm3] 2L_9281511_SNP [dm6]	C	A	1.344e^-4	0.801	INTRON Ggamma30A
2R	14764778	2R_14764778_SNP [dm3] 2R_18877273_SNP [dm6]	C	A	1.344e^-4	0.801	INTERGENIC
2L	16664364	2L_16664364_SNP [dm3] 2L_16664364_SNP [dm6]	C	A	1.347e^-4	0.801	UTR_3_PRIME Trpgamma DOWNSTREAM Trpgamma
2R	12273111	2R_12273111_SNP [dm3] 2R_16385606_SNP [dm6]	T	C	1.367e^-4	0.801	UTR_3_PRIME CG43187 UPSTREAM Sema-2b
2R	9659460	2R_9659460_INS [dm3] 2R_13771955_INS [dm6]	C	CAT	1.367e^-4	0.801	INTRON Cpr50Ca
2R	8517874	2R_8517874_SNP [dm3] 2R_12630369_SNP [dm6]	G	A	1.367e^-4	0.801	INTRON muskelin
3R	24983171	3R_24983171_SNP [dm3] 3R_29157449_SNP [dm6]	T	C	1.372e^-4	0.801	UPSTREAM CG11897 DOWNSTREAM Rpn2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	4190514	2L_4190514_SNP [dm3] 2L_4190514_SNP [dm6]	C	A	1.373e^-4	0.801	INTRON CG3714	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	20548259	3L_20548259_SNP [dm3] 3L_20555159_SNP [dm6]	T	G	1.376e^-4	0.801	INTERGENIC
2R	7954329	2R_7954329_SNP [dm3] 2R_12066824_SNP [dm6]	G	T	1.376e^-4	0.801	INTRON CG8888	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	6238123	2L_6238123_SNP [dm3] 2L_6238123_SNP [dm6]	C	T	1.380e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
2R	16968725	2R_16968725_SNP [dm3] 2R_21081220_SNP [dm6]	T	A	1.389e^-4	0.801	INTRON Treh
2R	3902264	2R_3902264_SNP [dm3] 2R_8014759_SNP [dm6]	T	C	1.393e^-4	0.801	UPSTREAM mir-4981 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
3L	11121264	3L_11121264_SNP [dm3] 3L_11128164_SNP [dm6]	C	G	1.401e^-4	0.801	INTRON CG42575
X	12661623	X_12661623_SNP [dm3] X_12767590_SNP [dm6]	A	G	1.401e^-4	0.801	INTRON CG3812
2L	16656916	2L_16656916_SNP [dm3] 2L_16656916_SNP [dm6]	C	A	1.411e^-4	0.801	UPSTREAM CG42389 INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Ubx
2L	20942131	2L_20942131_SNP [dm3] 2L_20942131_SNP [dm6]	G	A	1.414e^-4	0.801	INTERGENIC
2L	13913633	2L_13913633_SNP [dm3] 2L_13913633_SNP [dm6]	A	G	1.428e^-4	0.801	DOWNSTREAM Acyp INTERGENIC	TF binding site mE1_TFBS_cad
2L	22141303	2L_22141303_SNP [dm3] 2L_22141303_SNP [dm6]	A	T	1.430e^-4	0.801	INTRON CG42748
2L	16654687	2L_16654687_SNP [dm3] 2L_16654687_SNP [dm6]	C	T	1.433e^-4	0.801	INTRON CG42389
3L	897188	3L_897188_SNP [dm3] 3L_897188_SNP [dm6]	T	C	1.438e^-4	0.801	SYNONYMOUS_CODING CG34056 UPSTREAM CG34057
2R	2178150	2R_2178150_SNP [dm3] 2R_6290645_SNP [dm6]	G	A	1.455e^-4	0.801	INTERGENIC	transposable element FlyBase
2R	8516182	2R_8516182_SNP [dm3] 2R_12628677_SNP [dm6]	A	G	1.460e^-4	0.801	DOWNSTREAM muskelin & 1 other INTERGENIC
2L	22079364	2L_22079364_SNP [dm3] 2L_22079364_SNP [dm6]	C	G	1.465e^-4	0.801	UPSTREAM ttm3 INTERGENIC
3R	20267222	3R_20267222_SNP [dm3] 3R_24441500_SNP [dm6]	A	T	1.468e^-4	0.801	INTRON nAChRalpha1
2R	20384295	2R_20384295_SNP [dm3] 2R_24496772_SNP [dm6]	A	G	1.469e^-4	0.801	SYNONYMOUS_CODING Crtp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	10824235	X_10824235_SNP [dm3] X_10930202_SNP [dm6]	C	A	1.469e^-4	0.801	UPSTREAM Myo10A DOWNSTREAM CG2145 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
3L	1270024	3L_1270024_SNP [dm3] 3L_1270024_SNP [dm6]	C	T	1.471e^-4	0.801	INTRON CG9134
3R	25520266	3R_25520266_SNP [dm3] 3R_29694544_SNP [dm6]	G	T	1.473e^-4	0.801	INTRON dmrt99B
2L	12981213	2L_12981213_SNP [dm3] 2L_12981213_SNP [dm6]	G	A	1.474e^-4	0.801	UTR_3_PRIME Vha68-3
2L	16651604	2L_16651604_SNP [dm3] 2L_16651604_SNP [dm6]	T	G	1.476e^-4	0.801	INTRON CG42389
2L	3445614	2L_3445614_SNP [dm3] 2L_3445614_SNP [dm6]	A	T	1.484e^-4	0.801	UPSTREAM CG2772 INTERGENIC
3R	26878386	3R_26878386_SNP [dm3] 3R_31052664_SNP [dm6]	T	A	1.484e^-4	0.801	UTR_3_PRIME l_3_03670 DOWNSTREAM Aph-4	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	6961048	2R_6961048_SNP [dm3] 2R_11073543_SNP [dm6]	G	A	1.487e^-4	0.801	INTRON luna	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	20127088	3R_20127088_SNP [dm3] 3R_24301366_SNP [dm6]	C	A	1.488e^-4	0.801	INTRON crb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4855240	2R_4855240_SNP [dm3] 2R_8967735_SNP [dm6]	G	T	1.488e^-4	0.801	INTRON CG8216
2L	17186424	2L_17186424_SNP [dm3] 2L_17186424_SNP [dm6]	C	T	1.491e^-4	0.801	INTERGENIC
3L	10228785	3L_10228785_SNP [dm3] 3L_10235685_SNP [dm6]	T	C	1.494e^-4	0.801	UPSTREAM CR44542 INTERGENIC
3L	5600025	3L_5600025_SNP [dm3] 3L_5606925_SNP [dm6]	T	A	1.494e^-4	0.801	UTR_3_PRIME mthl2 DOWNSTREAM Eaf6
3L	5600026	3L_5600026_SNP [dm3] 3L_5606926_SNP [dm6]	A	T	1.494e^-4	0.801	UTR_3_PRIME mthl2 DOWNSTREAM Eaf6
3R	22821820	3R_22821820_SNP [dm3] 3R_26996098_SNP [dm6]	C	G	1.507e^-4	0.801	NON_SYNONYMOUS_CODING TwdlC UPSTREAM RYa-R	TF binding site mE1_TFBS_chinmo
2L	16652625	2L_16652625_SNP [dm3] 2L_16652625_SNP [dm6]	A	G	1.512e^-4	0.801	INTRON CG42389
3L	18944079	3L_18944079_SNP [dm3] 3L_18950979_SNP [dm6]	G	T	1.523e^-4	0.801	INTRON CG6836
3R	7283632	3R_7283632_SNP [dm3] 3R_11457910_SNP [dm6]	T	C	1.527e^-4	0.801	UTR_5_PRIME PGRP-LB INTRON CG17230 & 1 other
2L	21152512	2L_21152512_SNP [dm3] 2L_21152512_SNP [dm6]	G	C	1.533e^-4	0.801	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14545188	2R_14545188_SNP [dm3] 2R_18657683_SNP [dm6]	G	A	1.534e^-4	0.801	DOWNSTREAM Gint3 & 1 other INTRON SP2637
X	15172085	X_15172085_SNP [dm3] X_15278052_SNP [dm6]	C	T	1.540e^-4	0.801	INTERGENIC
X	2691546	X_2691546_SNP [dm3] X_2797513_SNP [dm6]	C	T	1.540e^-4	0.801	INTRON kirre
3L	6075643	3L_6075643_SNP [dm3] 3L_6082543_SNP [dm6]	C	T	1.544e^-4	0.801	UPSTREAM CG13293 DOWNSTREAM CG6619 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	3731491	X_3731491_SNP [dm3] X_3837458_SNP [dm6]	C	A	1.544e^-4	0.801	INTRON ec	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
2R	3374446	2R_3374446_SNP [dm3] 2R_7486941_SNP [dm6]	A	G	1.545e^-4	0.801	UPSTREAM wech INTRON wech	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	11337220	3L_11337220_SNP [dm3] 3L_11344120_SNP [dm6]	G	A	1.552e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA
X	13139916	X_13139916_SNP [dm3] X_13245883_SNP [dm6]	A	G	1.561e^-4	0.801	INTRON mew	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16662479	2L_16662479_SNP [dm3] 2L_16662479_SNP [dm6]	A	T	1.562e^-4	0.801	UTR_3_PRIME CG42389 DOWNSTREAM CG42389 & 1 other
3R	24477152	3R_24477152_SNP [dm3] 3R_28651430_SNP [dm6]	G	A	1.572e^-4	0.801	UPSTREAM CG31050 INTERGENIC
X	19685270	X_19685270_SNP [dm3] X_19791237_SNP [dm6]	G	T	1.577e^-4	0.801	INTERGENIC
X	13135364	X_13135364_SNP [dm3] X_13241331_SNP [dm6]	A	T	1.581e^-4	0.801	INTRON mew
2R	11903932	2R_11903932_SNP [dm3] 2R_16016427_SNP [dm6]	T	C	1.585e^-4	0.801	SYNONYMOUS_CODING CG8397 DOWNSTREAM Rrp42
2R	16986849	2R_16986849_SNP [dm3] 2R_21099344_SNP [dm6]	A	G	1.585e^-4	0.801	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	26879695	3R_26879695_SNP [dm3] 3R_31053973_SNP [dm6]	G	A	1.585e^-4	0.801	UPSTREAM l_3_03670 DOWNSTREAM dco INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
X	14371622	X_14371622_SNP [dm3] X_14477589_SNP [dm6]	A	G	1.588e^-4	0.801	INTRON CG9411
2L	17182573	2L_17182573_SNP [dm3] 2L_17182573_SNP [dm6]	T	C	1.589e^-4	0.801	SYNONYMOUS_CODING CG31750 DOWNSTREAM Gr36c
2L	16663858	2L_16663858_SNP [dm3] 2L_16663858_SNP [dm6]	G	A	1.590e^-4	0.801	UTR_3_PRIME Trpgamma DOWNSTREAM CG42389 & 1 other
3R	9791490	3R_9791490_SNP [dm3] 3R_13965768_SNP [dm6]	T	G	1.593e^-4	0.801	SYNONYMOUS_CODING Orc2
3L	897184	3L_897184_SNP [dm3] 3L_897184_SNP [dm6]	A	G	1.596e^-4	0.801	NON_SYNONYMOUS_CODING CG34056 UPSTREAM CG34057
2R	17204000	2R_17204000_SNP [dm3] 2R_21316495_SNP [dm6]	C	T	1.600e^-4	0.801	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	17204015	2R_17204015_SNP [dm3] 2R_21316510_SNP [dm6]	C	G	1.600e^-4	0.801	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	14372435	X_14372435_SNP [dm3] X_14478402_SNP [dm6]	T	C	1.600e^-4	0.801	INTRON CG9411
3L	11192534	3L_11192534_SNP [dm3] 3L_11199434_SNP [dm6]	T	G	1.613e^-4	0.801	UPSTREAM CG7607 INTRON Plod
2L	1603483	2L_1603483_SNP [dm3] 2L_1603483_SNP [dm6]	C	T	1.618e^-4	0.801	SYNONYMOUS_CODING haf INTRON CG31935	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5903732	X_5903732_DEL [dm3] X_6009699_DEL [dm6]	AA	A	1.622e^-4	0.801	INTRON mab-21
2R	12273696	2R_12273696_SNP [dm3] 2R_16386191_SNP [dm6]	G	T	1.624e^-4	0.801	UPSTREAM Sema-2b DOWNSTREAM CG43187 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	13236977	2L_13236977_SNP [dm3] 2L_13236977_SNP [dm6]	G	T	1.627e^-4	0.801	INTRON CG5867
2L	4521571	2L_4521571_SNP [dm3] 2L_4521571_SNP [dm6]	A	G	1.628e^-4	0.801	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16656573	2L_16656573_SNP [dm3] 2L_16656573_SNP [dm6]	A	G	1.631e^-4	0.801	UPSTREAM CG42389 INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	14860956	3R_14860956_SNP [dm3] 3R_19035234_SNP [dm6]	C	A	1.633e^-4	0.801	INTRON CG6026
2L	16097510	2L_16097510_SNP [dm3] 2L_16097510_SNP [dm6]	C	T	1.634e^-4	0.801	INTERGENIC
2L	13911851	2L_13911851_SNP [dm3] 2L_13911851_SNP [dm6]	A	T	1.650e^-4	0.801	UPSTREAM Acyp DOWNSTREAM Ance-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	8143350	2L_8143350_SNP [dm3] 2L_8143350_SNP [dm6]	G	T	1.664e^-4	0.801	DOWNSTREAM CG42762 INTRON CG8552	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
X	14663578	X_14663578_SNP [dm3] X_14769545_SNP [dm6]	C	G	1.665e^-4	0.801	INTERGENIC
2R	13239285	2R_13239285_SNP [dm3] 2R_17351780_SNP [dm6]	A	G	1.667e^-4	0.801	INTRON mbl
2R	3908618	2R_3908618_DEL [dm3] 2R_8021113_DEL [dm6]	AGTTGGACCCAGTTCCCA...	A	1.674e^-4	0.801	EXON CR45267	TF binding site mE1_TFBS_cad
3R	9788682	3R_9788682_SNP [dm3] 3R_13962960_SNP [dm6]	G	T	1.675e^-4	0.801	SYNONYMOUS_CODING CG9925	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13769648	3L_13769648_SNP [dm3] 3L_13776548_SNP [dm6]	G	A	1.676e^-4	0.801	INTRON bru-3
3L	6255689	3L_6255689_SNP [dm3] 3L_6262589_SNP [dm6]	T	C	1.680e^-4	0.801	UTR_5_PRIME ImpL3 DOWNSTREAM CR44522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	15421972	X_15421972_SNP [dm3] X_15527939_SNP [dm6]	G	A	1.688e^-4	0.801	INTRON Ac13E
2R	12174003	2R_12174003_SNP [dm3] 2R_16286498_SNP [dm6]	G	A	1.699e^-4	0.801	NON_SYNONYMOUS_CODING CG9068 UPSTREAM CR43728
2L	12085632	2L_12085632_SNP [dm3] 2L_12085632_SNP [dm6]	C	T	1.709e^-4	0.801	UTR_5_PRIME prd UPSTREAM CR44592 & 2 others	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	27164159	3R_27164159_SNP [dm3] 3R_31338437_SNP [dm6]	T	A	1.715e^-4	0.801	INTRON CG34347
3R	25182085	3R_25182085_SNP [dm3] 3R_29356363_SNP [dm6]	G	A	1.717e^-4	0.801	EXON CR45547
2R	8919168	2R_8919168_SNP [dm3] 2R_13031663_SNP [dm6]	G	A	1.719e^-4	0.801	INTERGENIC	TF binding site mE1_TFBS_sens
2L	17180108	2L_17180108_SNP [dm3] 2L_17180108_SNP [dm6]	G	A	1.721e^-4	0.801	UPSTREAM Gr36c DOWNSTREAM Gr36b INTERGENIC
2R	9494414	2R_9494414_INS [dm3] 2R_13606909_INS [dm6]	A	AA	1.733e^-4	0.801	INTERGENIC
3L	2543660	3L_2543660_SNP [dm3] 3L_2543660_SNP [dm6]	A	G	1.738e^-4	0.801	INTRON Spn	TF binding site mE1_TFBS_cad
X	20501181	X_20501181_SNP [dm3] X_20630154_SNP [dm6]	T	G	1.742e^-4	0.801	INTERGENIC
X	14770344	X_14770344_SNP [dm3] X_14876311_SNP [dm6]	C	A	1.742e^-4	0.801	SYNONYMOUS_CODING CG45065 UTR_3_PRIME CG45064 INTRON Flo2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15945645	2R_15945645_SNP [dm3] 2R_20058140_SNP [dm6]	A	G	1.744e^-4	0.801	EXON CR44631	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	20320265	2R_20320265_SNP [dm3] 2R_24432742_SNP [dm6]	A	T	1.745e^-4	0.801	UPSTREAM Pgam5-2 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	13574830	2L_13574830_SNP [dm3] 2L_13574830_SNP [dm6]	C	G	1.753e^-4	0.801	INTRON kuz
3R	24976247	3R_24976247_SNP [dm3] 3R_29150525_SNP [dm6]	G	A	1.779e^-4	0.801	SYNONYMOUS_CODING ligatin DOWNSTREAM Pglym78	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	25398180	3R_25398180_SNP [dm3] 3R_29572458_SNP [dm6]	A	G	1.783e^-4	0.801	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	20244755	2L_20244755_SNP [dm3] 2L_20244755_SNP [dm6]	T	C	1.791e^-4	0.801	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	16907060	3L_16907060_SNP [dm3] 3L_16913960_SNP [dm6]	T	A	1.796e^-4	0.801	INTRON Lmpt
3L	17254730	3L_17254730_INS [dm3] 3L_17261630_INS [dm6]	G	AA	1.798e^-4	0.801	INTRON CR43870
3R	21216821	3R_21216821_INS [dm3] 3R_25391099_INS [dm6]	A	AG	1.814e^-4	0.801	INTRON Fur1
2R	12807397	2R_12807397_SNP [dm3] 2R_16919892_SNP [dm6]	A	C	1.818e^-4	0.801	INTERGENIC
2R	11219262	2R_11219262_SNP [dm3] 2R_15331757_SNP [dm6]	A	G	1.821e^-4	0.801	UPSTREAM CR44371 INTRON Hr51
2L	13913634	2L_13913634_SNP [dm3] 2L_13913634_SNP [dm6]	G	A	1.829e^-4	0.801	DOWNSTREAM Acyp INTERGENIC	TF binding site mE1_TFBS_cad
X	20950784	X_20950784_SNP [dm3] X_21079757_SNP [dm6]	C	A	1.831e^-4	0.801	DOWNSTREAM bves INTRON bves	TF binding site BDTNP1_TFBS_dl
X	16818534	X_16818534_SNP [dm3] X_16924501_SNP [dm6]	C	T	1.832e^-4	0.801	UPSTREAM CG4928 INTRON CG4928
2L	12085605	2L_12085605_SNP [dm3] 2L_12085605_SNP [dm6]	A	G	1.837e^-4	0.801	UTR_5_PRIME prd UPSTREAM CR44592 & 1 other	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	5233293	3L_5233293_SNP [dm3] 3L_5240193_SNP [dm6]	G	T	1.837e^-4	0.801	INTRON shep
3L	21473441	3L_21473441_SNP [dm3] 3L_21480341_SNP [dm6]	A	G	1.838e^-4	0.801	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17788965	2R_17788965_SNP [dm3] 2R_21901460_SNP [dm6]	A	G	1.841e^-4	0.801	INTRON Fili	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3821664	X_3821664_SNP [dm3] X_3927631_SNP [dm6]	G	C	1.851e^-4	0.801	INTRON CG42541
X	15112721	X_15112721_SNP [dm3] X_15218688_SNP [dm6]	A	T	1.856e^-4	0.801	INTERGENIC
2L	13236965	2L_13236965_SNP [dm3] 2L_13236965_SNP [dm6]	T	C	1.864e^-4	0.801	INTRON CG5867
2L	1603291	2L_1603291_SNP [dm3] 2L_1603291_SNP [dm6]	C	T	1.866e^-4	0.801	SYNONYMOUS_CODING haf INTRON CG31935	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7185082	3L_7185082_SNP [dm3] 3L_7191982_SNP [dm6]	A	G	1.871e^-4	0.801	INTERGENIC
X	12875938	X_12875938_SNP [dm3] X_12981905_SNP [dm6]	G	A	1.877e^-4	0.801	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	26060546	3R_26060546_SNP [dm3] 3R_30234824_SNP [dm6]	C	T	1.883e^-4	0.801	INTERGENIC
3R	21975060	3R_21975060_SNP [dm3] 3R_26149338_SNP [dm6]	T	C	1.886e^-4	0.801	INTERGENIC
2L	8143795	2L_8143795_SNP [dm3] 2L_8143795_SNP [dm6]	A	G	1.891e^-4	0.801	NON_SYNONYMOUS_CODING CG42762 DOWNSTREAM CG42763 INTRON CG8552	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11159969	2L_11159969_SNP [dm3] 2L_11159969_SNP [dm6]	C	G	1.893e^-4	0.801	SYNONYMOUS_CODING Ca-beta UTR_3_PRIME Ca-beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8970036	2R_8970036_SNP [dm3] 2R_13082531_SNP [dm6]	G	A	1.894e^-4	0.801	INTERGENIC
3L	6513576	3L_6513576_SNP [dm3] 3L_6520476_SNP [dm6]	C	T	1.894e^-4	0.801	INTRON sfl
3R	3697758	3R_3697758_SNP [dm3] 3R_7872036_SNP [dm6]	G	A	1.897e^-4	0.801	NON_SYNONYMOUS_CODING CG17816
2L	4187909	2L_4187909_SNP [dm3] 2L_4187909_SNP [dm6]	G	A	1.898e^-4	0.801	UPSTREAM lectin-24Db & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	10824248	X_10824248_INS [dm3] X_10930215_INS [dm6]	C	CCATCGGGAAAA...	1.900e^-4	0.801	UPSTREAM Myo10A DOWNSTREAM CG2145 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
3L	12280109	3L_12280109_SNP [dm3] 3L_12287009_SNP [dm6]	G	T	1.901e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	25398178	3R_25398178_SNP [dm3] 3R_29572456_SNP [dm6]	A	G	1.902e^-4	0.801	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	6651409	X_6651409_INS [dm3] X_6757376_INS [dm6]	T	TT	1.904e^-4	0.801	INTRON CG14438	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
2L	16657093	2L_16657093_SNP [dm3] 2L_16657093_SNP [dm6]	T	C	1.911e^-4	0.801	UPSTREAM CG42389 INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
X	19786660	X_19786660_INS [dm3] X_19892627_INS [dm6]	T	TCTG	1.922e^-4	0.801	INTRON Hers
X	8709224	X_8709224_SNP [dm3] X_8815191_SNP [dm6]	C	T	1.923e^-4	0.801	INTERGENIC
X	19482221	X_19482221_SNP [dm3] X_19588188_SNP [dm6]	T	A	1.923e^-4	0.801	INTRON CG14219
2R	17203991	2R_17203991_SNP [dm3] 2R_21316486_SNP [dm6]	C	G	1.924e^-4	0.801	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	17548484	2L_17548484_SNP [dm3] 2L_17548484_SNP [dm6]	A	G	1.928e^-4	0.801	DOWNSTREAM CR45697 INTERGENIC
3R	9863786	3R_9863786_SNP [dm3] 3R_14038064_SNP [dm6]	G	A	1.931e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15617789	X_15617789_SNP [dm3] X_15723756_SNP [dm6]	T	C	1.935e^-4	0.801	SYNONYMOUS_CODING CG8184	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1997819	3L_1997819_SNP [dm3] 3L_1997819_SNP [dm6]	A	G	1.936e^-4	0.801	INTERGENIC
2L	10729321	2L_10729321_SNP [dm3] 2L_10729321_SNP [dm6]	G	A	1.939e^-4	0.801	UPSTREAM CG17118 DOWNSTREAM CG6431 INTRON CG6443	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	11223206	3L_11223206_DEL [dm3] 3L_11230106_DEL [dm6]	ACAATA	A	1.940e^-4	0.801	UTR_3_PRIME CG42671 DOWNSTREAM CG42671
2R	13259042	2R_13259042_SNP [dm3] 2R_17371537_SNP [dm6]	G	A	1.948e^-4	0.801	INTRON mbl
2L	4190501	2L_4190501_SNP [dm3] 2L_4190501_SNP [dm6]	T	A	1.953e^-4	0.801	INTRON CG3714	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1173376	3L_1173376_SNP [dm3] 3L_1173376_SNP [dm6]	C	T	1.954e^-4	0.801	SYNONYMOUS_CODING bab2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13769636	3L_13769636_SNP [dm3] 3L_13776536_SNP [dm6]	T	A	1.956e^-4	0.801	INTRON bru-3
3L	14492524	3L_14492524_SNP [dm3] 3L_14499424_SNP [dm6]	C	T	1.958e^-4	0.801	INTRON bbg	TF binding site mE1_TFBS_inv
2L	13239570	2L_13239570_SNP [dm3] 2L_13239570_SNP [dm6]	C	T	1.962e^-4	0.801	UPSTREAM CG5945 DOWNSTREAM CG5867 INTERGENIC
2L	2623839	2L_2623839_SNP [dm3] 2L_2623839_SNP [dm6]	A	G	1.964e^-4	0.801	INTERGENIC
2L	13274164	2L_13274164_SNP [dm3] 2L_13274164_SNP [dm6]	T	C	1.967e^-4	0.801	INTRON CG44085
3L	3562040	3L_3562040_SNP [dm3] 3L_3562040_SNP [dm6]	T	C	1.968e^-4	0.801	INTRON Eip63E
3L	6077930	3L_6077930_SNP [dm3] 3L_6084830_SNP [dm6]	C	T	1.978e^-4	0.801	INTRON CG13293
2L	4190518	2L_4190518_DEL [dm3] 2L_4190518_DEL [dm6]	ACA	A	1.979e^-4	0.801	INTRON CG3714	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	17798163	2L_17798163_SNP [dm3] 2L_17798163_SNP [dm6]	A	G	1.980e^-4	0.801	SYNONYMOUS_CODING CadN2
2R	4855241	2R_4855241_SNP [dm3] 2R_8967736_SNP [dm6]	G	T	1.983e^-4	0.801	INTRON CG8216
X	16607976	X_16607976_SNP [dm3] X_16713943_SNP [dm6]	G	A	1.986e^-4	0.801	SYNONYMOUS_CODING CG13008 DOWNSTREAM CG34325	TF binding site mE1_TFBS_cad
2R	3909186	2R_3909186_SNP [dm3] 2R_8021681_SNP [dm6]	C	T	1.988e^-4	0.801	EXON CR45267	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	18234297	2L_18234297_SNP [dm3] 2L_18234297_SNP [dm6]	G	T	1.996e^-4	0.801	INTRON CG42750
2R	6581185	2R_6581185_SNP [dm3] 2R_10693680_SNP [dm6]	T	A	2.005e^-4	0.801	INTRON stan	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	11877248	3L_11877248_SNP [dm3] 3L_11884148_SNP [dm6]	A	G	2.014e^-4	0.801	DOWNSTREAM CCDC151 INTRON CG44837
2L	16650305	2L_16650305_SNP [dm3] 2L_16650305_SNP [dm6]	G	A	2.019e^-4	0.801	INTRON CG42389
3R	14860908	3R_14860908_SNP [dm3] 3R_19035186_SNP [dm6]	T	G	2.029e^-4	0.801	INTRON CG6026
2L	2748539	2L_2748539_SNP [dm3] 2L_2748539_SNP [dm6]	C	G	2.039e^-4	0.801	UTR_5_PRIME Pgk UPSTREAM Pgk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	19482456	2R_19482456_SNP [dm3] 2R_23594933_SNP [dm6]	C	T	2.040e^-4	0.801	INTRON apt
2L	13995839	2L_13995839_SNP [dm3] 2L_13995839_SNP [dm6]	G	T	2.041e^-4	0.801	INTRON rk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22768872	3R_22768872_SNP [dm3] 3R_26943150_SNP [dm6]	T	C	2.042e^-4	0.801	SYNONYMOUS_CODING sda	TF binding site mE1_TFBS_cad
3L	2804733	3L_2804733_SNP [dm3] 3L_2804733_SNP [dm6]	T	C	2.043e^-4	0.801	INTRON CG43444	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	6237375	2L_6237375_SNP [dm3] 2L_6237375_SNP [dm6]	G	T	2.044e^-4	0.801	INTERGENIC
2R	5671822	2R_5671822_SNP [dm3] 2R_9784317_SNP [dm6]	A	G	2.048e^-4	0.801	INTRON CG1688
2R	14610983	2R_14610983_SNP [dm3] 2R_18723478_SNP [dm6]	A	T	2.049e^-4	0.801	INTRON Hs3st-A
3L	6899137	3L_6899137_SNP [dm3] 3L_6906037_SNP [dm6]	G	A	2.049e^-4	0.801	INTERGENIC
3L	10506317	3L_10506317_SNP [dm3] 3L_10513217_SNP [dm6]	A	G	2.050e^-4	0.801	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi
3L	7302211	3L_7302211_SNP [dm3] 3L_7309111_SNP [dm6]	A	G	2.050e^-4	0.801	INTRON unc-13-4A
3L	10506313	3L_10506313_SNP [dm3] 3L_10513213_SNP [dm6]	G	A	2.058e^-4	0.801	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi
3L	6576741	3L_6576741_SNP [dm3] 3L_6583641_SNP [dm6]	G	C	2.065e^-4	0.801	INTRON CG18769 & 1 other
2R	19502523	2R_19502523_SNP [dm3] 2R_23615000_SNP [dm6]	T	C	2.071e^-4	0.801	UPSTREAM CG4019 INTRON CG17664	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run
2L	2741401	2L_2741401_SNP [dm3] 2L_2741401_SNP [dm6]	A	C	2.071e^-4	0.801	SYNONYMOUS_CODING Hrs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	2445054	X_2445054_SNP [dm3] X_2551021_SNP [dm6]	A	T	2.079e^-4	0.801	INTERGENIC
3L	6837643	3L_6837643_SNP [dm3] 3L_6844543_SNP [dm6]	A	T	2.080e^-4	0.801	INTERGENIC
X	20576942	X_20576942_SNP [dm3] X_20705915_SNP [dm6]	T	A	2.081e^-4	0.801	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	13057271	2L_13057271_SNP [dm3] 2L_13057271_SNP [dm6]	G	A	2.084e^-4	0.801	INTRON CG9932
X	2142045	X_2142045_SNP [dm3] X_2248012_SNP [dm6]	T	A	2.088e^-4	0.801	SYNONYMOUS_CODING crn DOWNSTREAM Or2a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12017865	2R_12017865_SNP [dm3] 2R_16130360_SNP [dm6]	C	G	2.089e^-4	0.801	INTRON spin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	6002623	2R_6002623_SNP [dm3] 2R_10115118_SNP [dm6]	C	A	2.102e^-4	0.801	INTRON Pfk
3L	2692958	3L_2692958_SNP [dm3] 3L_2692958_SNP [dm6]	A	T	2.103e^-4	0.801	INTRON Fife
2L	8586669	2L_8586669_SNP [dm3] 2L_8586669_SNP [dm6]	A	G	2.106e^-4	0.801	INTRON Sema-1a
2L	21336623	2L_21336623_SNP [dm3] 2L_21336623_SNP [dm6]	C	T	2.108e^-4	0.801	INTRON dimm	transposable element FlyBase
3L	18944674	3L_18944674_SNP [dm3] 3L_18951574_SNP [dm6]	C	T	2.110e^-4	0.801	INTRON CG6836
X	3803327	X_3803327_SNP [dm3] X_3909294_SNP [dm6]	C	T	2.119e^-4	0.803	INTRON CG42541
2R	8970254	2R_8970254_SNP [dm3] 2R_13082749_SNP [dm6]	C	T	2.124e^-4	0.803	INTERGENIC
2R	12425002	2R_12425002_SNP [dm3] 2R_16537497_SNP [dm6]	C	A	2.130e^-4	0.804	DOWNSTREAM loopin-1 INTERGENIC
3L	13002851	3L_13002851_SNP [dm3] 3L_13009751_SNP [dm6]	G	C	2.136e^-4	0.805	NON_SYNONYMOUS_CODING CG11261 DOWNSTREAM CG14117
2L	2623868	2L_2623868_SNP [dm3] 2L_2623868_SNP [dm6]	C	A	2.150e^-4	0.806	INTERGENIC
2R	18938189	2R_18938189_SNP [dm3] 2R_23050666_SNP [dm6]	A	T	2.155e^-4	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3563000	3L_3563000_SNP [dm3] 3L_3563000_SNP [dm6]	C	G	2.160e^-4	0.806	INTRON Eip63E
2L	1028717	2L_1028717_SNP [dm3] 2L_1028717_SNP [dm6]	G	A	2.162e^-4	0.806	INTRON IA-2
2R	10475377	2R_10475377_SNP [dm3] 2R_14587872_SNP [dm6]	A	T	2.166e^-4	0.806	UTR_3_PRIME ttv
2R	13788787	2R_13788787_SNP [dm3] 2R_17901282_SNP [dm6]	C	T	2.170e^-4	0.806	INTRON Elk
3R	7283582	3R_7283582_SNP [dm3] 3R_11457860_SNP [dm6]	A	T	2.181e^-4	0.806	UTR_5_PRIME PGRP-LB INTRON CG17230 & 1 other
2L	4190516	2L_4190516_SNP [dm3] 2L_4190516_SNP [dm6]	A	T	2.189e^-4	0.806	INTRON CG3714	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	19796196	2R_19796196_SNP [dm3] 2R_23908673_SNP [dm6]	C	T	2.190e^-4	0.806	INTRON kcc EXON CR44806	TF binding site BDTNP1_TFBS_da
3L	13769657	3L_13769657_SNP [dm3] 3L_13776557_SNP [dm6]	T	A	2.203e^-4	0.806	INTRON bru-3
3L	12428263	3L_12428263_SNP [dm3] 3L_12435163_SNP [dm6]	T	C	2.204e^-4	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z
2L	2864871	2L_2864871_SNP [dm3] 2L_2864871_SNP [dm6]	A	G	2.206e^-4	0.806	INTRON CG2991
2L	2622639	2L_2622639_SNP [dm3] 2L_2622639_SNP [dm6]	C	T	2.207e^-4	0.806	INTERGENIC
3L	18942951	3L_18942951_SNP [dm3] 3L_18949851_SNP [dm6]	A	G	2.208e^-4	0.806	UPSTREAM CG6836 INTERGENIC
X	21527300	X_21527300_SNP [dm3] X_21656273_SNP [dm6]	G	T	2.210e^-4	0.806	INTERGENIC
X	6470335	X_6470335_SNP [dm3] X_6576302_SNP [dm6]	C	T	2.211e^-4	0.806	INTRON CG34417
3L	10693382	3L_10693382_SNP [dm3] 3L_10700282_SNP [dm6]	G	T	2.217e^-4	0.806	INTERGENIC
3L	13769652	3L_13769652_SNP [dm3] 3L_13776552_SNP [dm6]	G	A	2.221e^-4	0.806	INTRON bru-3
3L	19117890	3L_19117890_SNP [dm3] 3L_19124790_SNP [dm6]	G	T	2.229e^-4	0.806	INTRON CG14082
2L	1616447	2L_1616447_SNP [dm3] 2L_1616447_SNP [dm6]	C	T	2.230e^-4	0.806	INTERGENIC
2L	18943639	2L_18943639_SNP [dm3] 2L_18943639_SNP [dm6]	T	A	2.231e^-4	0.806	UTR_5_PRIME ssp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	7568439	2R_7568439_SNP [dm3] 2R_11680934_SNP [dm6]	A	T	2.236e^-4	0.806	INTRON Buffy
2L	4533863	2L_4533863_SNP [dm3] 2L_4533863_SNP [dm6]	T	G	2.247e^-4	0.809	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_sens
2L	2746683	2L_2746683_SNP [dm3] 2L_2746683_SNP [dm6]	G	A	2.258e^-4	0.811	SYNONYMOUS_CODING Cwc25 DOWNSTREAM Pgk	TF binding site mE1_TFBS_sens
X	6106232	X_6106232_SNP [dm3] X_6212199_SNP [dm6]	G	A	2.265e^-4	0.812	INTERGENIC
2L	10522090	2L_10522090_SNP [dm3] 2L_10522090_SNP [dm6]	A	G	2.282e^-4	0.814	INTERGENIC
3R	26879753	3R_26879753_DEL [dm3] 3R_31054031_DEL [dm6]	TTACGGTG	T	2.282e^-4	0.814	UPSTREAM l_3_03670 DOWNSTREAM dco INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
X	13627894	X_13627894_DEL [dm3] X_13733861_DEL [dm6]	AAATA	A	2.286e^-4	0.814	INTRON g
2L	7273111	2L_7273111_DEL [dm3] 2L_7273111_DEL [dm6]	TTATT	T	2.287e^-4	0.814	INTRON Wnt4	TF binding site mE1_TFBS_HSA
3L	4342750	3L_4342750_INS [dm3] 3L_4342750_INS [dm6]	A	AA	2.292e^-4	0.814	INTRON Cip4
2R	9594334	2R_9594334_SNP [dm3] 2R_13706829_SNP [dm6]	C	T	2.315e^-4	0.821	SYNONYMOUS_CODING fas	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11789572	2R_11789572_SNP [dm3] 2R_15902067_SNP [dm6]	T	C	2.323e^-4	0.822	INTRON sli	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4190538	2L_4190538_DEL [dm3] 2L_4190538_DEL [dm6]	ACATA	A	2.352e^-4	0.831	INTRON CG3714	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8501675	2R_8501675_SNP [dm3] 2R_12614170_SNP [dm6]	C	G	2.358e^-4	0.831	UTR_5_PRIME Galphaq UTR_3_PRIME CG45086 INTRON Galphaq
X	14777972	X_14777972_SNP [dm3] X_14883939_SNP [dm6]	A	C	2.364e^-4	0.832	INTRON Flo2
2R	2444431	2R_2444431_SNP [dm3] 2R_6556926_SNP [dm6]	C	T	2.369e^-4	0.832	INTRON jing	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	15247481	2L_15247481_SNP [dm3] 2L_15247481_SNP [dm6]	A	T	2.373e^-4	0.832	INTRON ZnT35C
3L	5233296	3L_5233296_SNP [dm3] 3L_5240196_SNP [dm6]	T	G	2.386e^-4	0.832	INTRON shep
2L	20329913	2L_20329913_SNP [dm3] 2L_20329913_SNP [dm6]	G	A	2.392e^-4	0.832	INTRON spir
X	10824299	X_10824299_INS [dm3] X_10930266_INS [dm6]	T	TT	2.396e^-4	0.832	UPSTREAM Myo10A DOWNSTREAM CG2145 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
X	8317412	X_8317412_SNP [dm3] X_8423379_SNP [dm6]	T	A	2.397e^-4	0.832	UTR_5_PRIME Trf2	TF binding site BDTNP1_TFBS_dl
2R	16532659	2R_16532659_SNP [dm3] 2R_20645154_SNP [dm6]	G	A	2.411e^-4	0.832	SYNONYMOUS_CODING DMAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	6144006	2L_6144006_SNP [dm3] 2L_6144006_SNP [dm6]	A	G	2.412e^-4	0.832	SYNONYMOUS_CODING CG13991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6851457	2R_6851457_INS [dm3] 2R_10963952_INS [dm6]	A	AA	2.418e^-4	0.832	INTERGENIC
X	5787771	X_5787771_SNP [dm3] X_5893738_SNP [dm6]	C	T	2.419e^-4	0.832	INTRON CR45668	TF binding site mE1_TFBS_zfh1
3R	13442154	3R_13442154_SNP [dm3] 3R_17616432_SNP [dm6]	T	A	2.422e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_zfh1
3L	7302188	3L_7302188_SNP [dm3] 3L_7309088_SNP [dm6]	T	C	2.435e^-4	0.832	INTRON unc-13-4A
2R	1401742	2R_1401742_SNP [dm3] 2R_5514237_SNP [dm6]	A	G	2.441e^-4	0.832	INTRON CG30438	transposable element FlyBase
2L	4527951	2L_4527951_SNP [dm3] 2L_4527951_SNP [dm6]	C	T	2.443e^-4	0.832	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12720237	X_12720237_SNP [dm3] X_12826204_SNP [dm6]	A	C	2.462e^-4	0.832	INTRON Pde9
2R	7848820	2R_7848820_SNP [dm3] 2R_11961315_SNP [dm6]	C	A	2.464e^-4	0.832	INTRON CG13188
3L	8572328	3L_8572328_SNP [dm3] 3L_8579228_SNP [dm6]	G	C	2.464e^-4	0.832	INTRON CG43078	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	1937584	3L_1937584_SNP [dm3] 3L_1937584_SNP [dm6]	A	G	2.503e^-4	0.832	INTRON CG5687
2R	12273636	2R_12273636_SNP [dm3] 2R_16386131_SNP [dm6]	C	T	2.516e^-4	0.832	UPSTREAM Sema-2b DOWNSTREAM CG43187 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	9821320	3R_9821320_SNP [dm3] 3R_13995598_SNP [dm6]	A	C	2.519e^-4	0.832	INTRON rdx
X	15317570	X_15317570_SNP [dm3] X_15423537_SNP [dm6]	C	G	2.526e^-4	0.832	INTRON Cngl
2R	3924680	2R_3924680_SNP [dm3] 2R_8037175_SNP [dm6]	A	C	2.531e^-4	0.832	INTRON Optix
3L	6532070	3L_6532070_SNP [dm3] 3L_6538970_SNP [dm6]	T	C	2.533e^-4	0.832	INTRON sfl
3L	15411382	3L_15411382_DEL [dm3] 3L_15418282_DEL [dm6]	AC	A	2.540e^-4	0.832	INTERGENIC
X	17833391	X_17833391_SNP [dm3] X_17939358_SNP [dm6]	T	C	2.561e^-4	0.832	DOWNSTREAM Sh INTRON Sh
3L	15664459	3L_15664459_SNP [dm3] 3L_15671359_SNP [dm6]	T	G	2.568e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	11196496	3L_11196496_SNP [dm3] 3L_11203396_SNP [dm6]	G	T	2.573e^-4	0.832	SYNONYMOUS_CODING Plod
2R	2144830	2R_2144830_SNP [dm3] 2R_6257325_SNP [dm6]	A	G	2.575e^-4	0.832	INTERGENIC	transposable element FlyBase
X	14365289	X_14365289_SNP [dm3] X_14471256_SNP [dm6]	G	C	2.591e^-4	0.832	INTERGENIC
2L	6407920	2L_6407920_SNP [dm3] 2L_6407920_SNP [dm6]	T	A	2.595e^-4	0.832	INTRON CG42368
2L	10132763	2L_10132763_SNP [dm3] 2L_10132763_SNP [dm6]	T	A	2.597e^-4	0.832	INTRON CG44153
2L	2331543	2L_2331543_SNP [dm3] 2L_2331543_SNP [dm6]	A	G	2.599e^-4	0.832	INTRON CG9967 & 1 other
X	10824292	X_10824292_SNP [dm3] X_10930259_SNP [dm6]	G	A	2.601e^-4	0.832	UPSTREAM Myo10A DOWNSTREAM CG2145 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
3R	13567814	3R_13567814_SNP [dm3] 3R_17742092_SNP [dm6]	G	T	2.611e^-4	0.832	INTRON TyrRII
2R	8519086	2R_8519086_SNP [dm3] 2R_12631581_SNP [dm6]	T	A	2.612e^-4	0.832	SYNONYMOUS_CODING muskelin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	4170741	2L_4170741_SNP [dm3] 2L_4170741_SNP [dm6]	T	A	2.612e^-4	0.832	INTERGENIC
2L	17809011	2L_17809011_SNP [dm3] 2L_17809011_SNP [dm6]	T	C	2.613e^-4	0.832	INTRON CadN2
X	20508137	X_20508137_SNP [dm3] X_20637110_SNP [dm6]	C	T	2.615e^-4	0.832	INTERGENIC
2L	4190503	2L_4190503_SNP [dm3] 2L_4190503_SNP [dm6]	C	A	2.643e^-4	0.832	INTRON CG3714	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	20254205	2L_20254205_SNP [dm3] 2L_20254205_SNP [dm6]	C	A	2.647e^-4	0.832	EXON CR40465
2L	2741555	2L_2741555_SNP [dm3] 2L_2741555_SNP [dm6]	C	T	2.652e^-4	0.832	INTRON Hrs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	15181710	X_15181710_DEL [dm3] X_15287677_DEL [dm6]	TATAAATACCATTTTAAGTG...	A	2.654e^-4	0.832	INTERGENIC
X	12874799	X_12874799_SNP [dm3] X_12980766_SNP [dm6]	G	A	2.677e^-4	0.832	INTERGENIC
3L	1997949	3L_1997949_SNP [dm3] 3L_1997949_SNP [dm6]	G	C	2.681e^-4	0.832	INTERGENIC
2R	13131053	2R_13131053_SNP [dm3] 2R_17243548_SNP [dm6]	T	G	2.685e^-4	0.832	INTRON mbl
2R	18620685	2R_18620685_SNP [dm3] 2R_22733180_SNP [dm6]	G	A	2.688e^-4	0.832	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15627128	2L_15627128_SNP [dm3] 2L_15627128_SNP [dm6]	G	C	2.700e^-4	0.832	INTERGENIC
2L	16226229	2L_16226229_SNP [dm3] 2L_16226229_SNP [dm6]	G	T	2.709e^-4	0.832	INTERGENIC
3L	5197134	3L_5197134_SNP [dm3] 3L_5204034_SNP [dm6]	C	G	2.711e^-4	0.832	INTRON shep
3L	12428256	3L_12428256_SNP [dm3] 3L_12435156_SNP [dm6]	T	G	2.713e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z
2R	8895054	2R_8895054_DEL [dm3] 2R_13007549_DEL [dm6]	CC	C	2.722e^-4	0.832	UTR_3_PRIME Su_z_2
2L	13674527	2L_13674527_SNP [dm3] 2L_13674527_SNP [dm6]	G	A	2.724e^-4	0.832	INTERGENIC
2R	17765055	2R_17765055_SNP [dm3] 2R_21877550_SNP [dm6]	C	T	2.736e^-4	0.832	INTRON Fili	TF binding site mE1_TFBS_cnc
2R	19370364	2R_19370364_SNP [dm3] 2R_23482841_SNP [dm6]	C	T	2.738e^-4	0.832	INTRON CG43795
2L	19699927	2L_19699927_SNP [dm3] 2L_19699927_SNP [dm6]	A	G	2.739e^-4	0.832	SYNONYMOUS_CODING scw INTRON Lar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	3638589	2R_3638589_SNP [dm3] 2R_7751084_SNP [dm6]	T	C	2.740e^-4	0.832	INTRON CG30497 & 1 other
2L	18462782	2L_18462782_SNP [dm3] 2L_18462782_SNP [dm6]	G	A	2.740e^-4	0.832	INTRON let-7-C	TF binding site mE1_TFBS_kn
2R	19381784	2R_19381784_SNP [dm3] 2R_23494261_SNP [dm6]	C	A	2.742e^-4	0.832	INTERGENIC
2L	15141838	2L_15141838_SNP [dm3] 2L_15141838_SNP [dm6]	G	C	2.742e^-4	0.832	INTERGENIC
3L	2805594	3L_2805594_SNP [dm3] 3L_2805594_SNP [dm6]	A	G	2.745e^-4	0.832	INTRON CG43444
X	3731409	X_3731409_SNP [dm3] X_3837376_SNP [dm6]	A	T	2.746e^-4	0.832	INTRON ec	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
2R	17204164	2R_17204164_SNP [dm3] 2R_21316659_SNP [dm6]	A	T	2.753e^-4	0.832	INTRON CG9485	TF binding site mE1_TFBS_cad
3R	10898898	3R_10898898_SNP [dm3] 3R_15073176_SNP [dm6]	C	A	2.753e^-4	0.832	INTRON dpr9
2L	12977324	2L_12977324_SNP [dm3] 2L_12977324_SNP [dm6]	T	C	2.754e^-4	0.832	SYNONYMOUS_CODING Vha68-2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8919322	2R_8919322_SNP [dm3] 2R_13031817_SNP [dm6]	A	G	2.758e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	10824242	X_10824242_SNP [dm3] X_10930209_SNP [dm6]	C	T	2.764e^-4	0.832	UPSTREAM Myo10A DOWNSTREAM CG2145 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
X	5702660	X_5702660_SNP [dm3] X_5808627_SNP [dm6]	G	C	2.766e^-4	0.832	UPSTREAM Prosbeta2R1 INTERGENIC
2L	20042184	2L_20042184_SNP [dm3] 2L_20042184_SNP [dm6]	A	T	2.766e^-4	0.832	INTRON sNPF
3L	13094020	3L_13094020_SNP [dm3] 3L_13100920_SNP [dm6]	A	C	2.773e^-4	0.832	DOWNSTREAM CR44554 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9604937	X_9604937_SNP [dm3] X_9710904_SNP [dm6]	T	A	2.774e^-4	0.832	INTERGENIC
2L	4190945	2L_4190945_SNP [dm3] 2L_4190945_SNP [dm6]	T	A	2.784e^-4	0.832	INTRON CG3714	TF binding site mE1_TFBS_cad
3L	1996351	3L_1996351_SNP [dm3] 3L_1996351_SNP [dm6]	T	A	2.798e^-4	0.832	INTERGENIC
X	8171748	X_8171748_SNP [dm3] X_8277715_SNP [dm6]	C	T	2.801e^-4	0.832	UTR_3_PRIME nAChRalpha3
2L	1620932	2L_1620932_SNP [dm3] 2L_1620932_SNP [dm6]	A	G	2.802e^-4	0.832	EXON CR44603	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10611184	2L_10611184_INS [dm3] 2L_10611184_INS [dm6]	T	TAT	2.806e^-4	0.832	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	6408560	X_6408560_SNP [dm3] X_6514527_SNP [dm6]	G	T	2.808e^-4	0.832	INTRON CG42340
2R	16708665	2R_16708665_INS [dm3] 2R_20821160_INS [dm6]	T	TT	2.814e^-4	0.832	DOWNSTREAM insc INTERGENIC
2L	2748852	2L_2748852_SNP [dm3] 2L_2748852_SNP [dm6]	C	T	2.820e^-4	0.832	UPSTREAM Pgk INTRON Pgk	TF binding site mE1_TFBS_HSA
2R	7423864	2R_7423864_SNP [dm3] 2R_11536359_SNP [dm6]	A	T	2.829e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11200150	2L_11200150_SNP [dm3] 2L_11200150_SNP [dm6]	C	T	2.830e^-4	0.832	INTRON Ca-beta
2L	3227642	2L_3227642_SNP [dm3] 2L_3227642_SNP [dm6]	C	T	2.835e^-4	0.832	INTERGENIC
2L	8143135	2L_8143135_SNP [dm3] 2L_8143135_SNP [dm6]	T	C	2.847e^-4	0.832	DOWNSTREAM CG42762 INTRON CG8552	TF binding site BDTNP1_TFBS_hb
2L	4190446	2L_4190446_SNP [dm3] 2L_4190446_SNP [dm6]	A	C	2.863e^-4	0.832	SYNONYMOUS_CODING CG3714	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7270936	3L_7270936_SNP [dm3] 3L_7277836_SNP [dm6]	C	T	2.863e^-4	0.832	INTRON unc-13-4A
2L	21183530	2L_21183530_SNP [dm3] 2L_21183530_SNP [dm6]	C	G	2.867e^-4	0.832	SYNONYMOUS_CODING Ret DOWNSTREAM Mcm10
X	15497020	X_15497020_SNP [dm3] X_15602987_SNP [dm6]	A	C	2.871e^-4	0.832	DOWNSTREAM sog INTERGENIC
2R	9271220	2R_9271220_SNP [dm3] 2R_13383715_SNP [dm6]	G	C	2.872e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13241625	2L_13241625_SNP [dm3] 2L_13241625_SNP [dm6]	A	G	2.877e^-4	0.832	SYNONYMOUS_CODING CG5945 UPSTREAM CR45330	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
X	14362956	X_14362956_SNP [dm3] X_14468923_SNP [dm6]	C	T	2.880e^-4	0.832	INTERGENIC
2L	22356981	2L_22356981_SNP [dm3] 2L_22356981_SNP [dm6]	C	A	2.882e^-4	0.832	UTR_5_PRIME CG17018 INTRON CG17018
X	19436366	X_19436366_DEL [dm3] X_19542333_DEL [dm6]	TCTT	T	2.887e^-4	0.832	INTRON CG32532
2R	10843027	2R_10843027_SNP [dm3] 2R_14955522_SNP [dm6]	T	A	2.888e^-4	0.832	INTRON aPKC	TF binding site mE1_TFBS_HSA
X	14663321	X_14663321_SNP [dm3] X_14769288_SNP [dm6]	C	A	2.890e^-4	0.832	INTERGENIC
2L	16656823	2L_16656823_SNP [dm3] 2L_16656823_SNP [dm6]	T	G	2.890e^-4	0.832	UPSTREAM CG42389 INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Ubx
2R	16989433	2R_16989433_DEL [dm3] 2R_21101928_DEL [dm6]	CC	C	2.891e^-4	0.832	UTR_5_PRIME ktub DOWNSTREAM CG34396	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	18552034	2R_18552034_INS [dm3] 2R_22664529_INS [dm6]	G	AGACTTGGTTTGTATCACAA...	2.895e^-4	0.832	DOWNSTREAM CG4250 INTERGENIC
X	14583310	X_14583310_SNP [dm3] X_14689277_SNP [dm6]	C	T	2.896e^-4	0.832	UTR_3_PRIME NetB
X	19671467	X_19671467_SNP [dm3] X_19777434_SNP [dm6]	C	A	2.897e^-4	0.832	UTR_3_PRIME vfl INTRON vfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2945474	3L_2945474_SNP [dm3] 3L_2945474_SNP [dm6]	T	C	2.900e^-4	0.832	UTR_3_PRIME Shab INTRON Shab
2L	4190556	2L_4190556_SNP [dm3] 2L_4190556_SNP [dm6]	C	T	2.903e^-4	0.832	SPLICE_SITE_REGION CG3714 INTRON CG3714	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17936815	2R_17936815_SNP [dm3] 2R_22049310_SNP [dm6]	C	G	2.906e^-4	0.832	INTERGENIC
2L	11027594	2L_11027594_SNP [dm3] 2L_11027594_SNP [dm6]	A	G	2.909e^-4	0.832	INTRON Samuel
2R	14425225	2R_14425225_SNP [dm3] 2R_18537720_SNP [dm6]	T	A	2.910e^-4	0.832	SYNONYMOUS_CODING Pepck UTR_3_PRIME CG45087	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3325187	X_3325187_SNP [dm3] X_3431154_SNP [dm6]	G	C	2.914e^-4	0.832	INTRON CR44999 & 1 other
2L	1589951	2L_1589951_SNP [dm3] 2L_1589951_SNP [dm6]	A	G	2.919e^-4	0.832	INTRON haf
3R	25581666	3R_25581666_SNP [dm3] 3R_29755944_SNP [dm6]	C	T	2.924e^-4	0.832	EXON CR44953
3R	13924655	3R_13924655_SNP [dm3] 3R_18098933_SNP [dm6]	T	C	2.926e^-4	0.832	INTRON sr
X	13489299	X_13489299_SNP [dm3] X_13595266_SNP [dm6]	C	T	2.930e^-4	0.832	INTRON up
2R	20308801	2R_20308801_SNP [dm3] 2R_24421278_SNP [dm6]	T	A	2.931e^-4	0.832	INTRON prom
2R	17596409	2R_17596409_DEL [dm3] 2R_21708904_DEL [dm6]	GG	G	2.938e^-4	0.832	DOWNSTREAM CR44749 & 1 other INTRON HmgD	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	17152665	2L_17152665_SNP [dm3] 2L_17152665_SNP [dm6]	T	G	2.939e^-4	0.832	INTRON beat-IIIa & 1 other
X	14138084	X_14138084_SNP [dm3] X_14244051_SNP [dm6]	A	G	2.945e^-4	0.832	INTRON CG32599	TF binding site mE1_TFBS_chinmo
3L	18944838	3L_18944838_SNP [dm3] 3L_18951738_SNP [dm6]	G	A	2.953e^-4	0.832	INTRON CG6836
2R	3922007	2R_3922007_SNP [dm3] 2R_8034502_SNP [dm6]	C	T	2.962e^-4	0.832	SYNONYMOUS_CODING Optix
2R	9345445	2R_9345445_SNP [dm3] 2R_13457940_SNP [dm6]	G	A	2.963e^-4	0.832	SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11086685	2L_11086685_SNP [dm3] 2L_11086685_SNP [dm6]	C	A	2.987e^-4	0.832	UPSTREAM CG16854 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	2746335	2L_2746335_SNP [dm3] 2L_2746335_SNP [dm6]	A	C	2.989e^-4	0.832	NON_SYNONYMOUS_CODING Cwc25 DOWNSTREAM Pgk	TF binding site mE1_TFBS_sens
2L	11023016	2L_11023016_SNP [dm3] 2L_11023016_SNP [dm6]	G	A	2.990e^-4	0.832	INTRON Samuel
3R	14837944	3R_14837944_SNP [dm3] 3R_19012222_SNP [dm6]	A	C	3.006e^-4	0.832	INTRON gukh	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	13916235	2L_13916235_SNP [dm3] 2L_13916235_SNP [dm6]	C	A	3.008e^-4	0.832	INTRON Ance-3	TF binding site BDTNP1_TFBS_twi
X	13775416	X_13775416_SNP [dm3] X_13881383_SNP [dm6]	C	T	3.017e^-4	0.832	INTRON mamo
X	14622949	X_14622949_SNP [dm3] X_14728916_SNP [dm6]	T	G	3.019e^-4	0.832	INTRON NetB
X	3731416	X_3731416_SNP [dm3] X_3837383_SNP [dm6]	T	C	3.019e^-4	0.832	INTRON ec	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
2L	3329309	2L_3329309_SNP [dm3] 2L_3329309_SNP [dm6]	T	C	3.025e^-4	0.832	SYNONYMOUS_CODING CG33282
2L	10030196	2L_10030196_SNP [dm3] 2L_10030196_SNP [dm6]	T	A	3.027e^-4	0.832	DOWNSTREAM CG13127 INTERGENIC
2R	4846198	2R_4846198_SNP [dm3] 2R_8958693_SNP [dm6]	T	A	3.029e^-4	0.832	INTRON babo
2L	17186262	2L_17186262_SNP [dm3] 2L_17186262_SNP [dm6]	A	T	3.034e^-4	0.832	INTERGENIC
2L	8788192	2L_8788192_SNP [dm3] 2L_8788192_SNP [dm6]	T	G	3.037e^-4	0.832	INTERGENIC
3R	24978557	3R_24978557_SNP [dm3] 3R_29152835_SNP [dm6]	C	A	3.044e^-4	0.832	NON_SYNONYMOUS_CODING Slbp UPSTREAM Rpn2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	13604550	X_13604550_SNP [dm3] X_13710517_SNP [dm6]	T	C	3.049e^-4	0.832	NON_SYNONYMOUS_CODING NnaD INTRON CG9940 & 1 other
3R	25574619	3R_25574619_SNP [dm3] 3R_29748897_SNP [dm6]	C	T	3.050e^-4	0.832	UTR_5_PRIME ATPsyn-gamma UPSTREAM yata & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	12285132	2L_12285132_SNP [dm3] 2L_12285132_SNP [dm6]	A	G	3.053e^-4	0.832	INTRON aret
3L	7926805	3L_7926805_SNP [dm3] 3L_7933705_SNP [dm6]	C	T	3.055e^-4	0.832	INTRON syd
3R	24985324	3R_24985324_SNP [dm3] 3R_29159602_SNP [dm6]	A	G	3.057e^-4	0.832	INTRON CG11897
2L	3329330	2L_3329330_SNP [dm3] 2L_3329330_SNP [dm6]	G	A	3.062e^-4	0.832	SYNONYMOUS_CODING CG33282
3L	755307	3L_755307_SNP [dm3] 3L_755307_SNP [dm6]	C	T	3.064e^-4	0.832	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	16665443	2L_16665443_SNP [dm3] 2L_16665443_SNP [dm6]	C	T	3.067e^-4	0.832	NON_SYNONYMOUS_CODING Trpgamma	TF binding site mE1_TFBS_cad
3R	3472340	3R_3472340_SNP [dm3] 3R_7646618_SNP [dm6]	C	G	3.071e^-4	0.832	INTERGENIC
X	12160928	X_12160928_SNP [dm3] X_12266895_SNP [dm6]	T	C	3.075e^-4	0.832	INTRON Ten-a	TF binding site mE1_TFBS_inv
2L	16233644	2L_16233644_SNP [dm3] 2L_16233644_SNP [dm6]	G	C	3.076e^-4	0.832	INTRON CG42817
X	7244389	X_7244389_SNP [dm3] X_7350356_SNP [dm6]	T	C	3.079e^-4	0.832	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	17235389	2L_17235389_SNP [dm3] 2L_17235389_SNP [dm6]	T	G	3.083e^-4	0.832	INTRON beat-IIIc
3R	9791334	3R_9791334_INS [dm3] 3R_13965612_INS [dm6]	A	AT	3.091e^-4	0.832	INTRON Orc2
2L	2764164	2L_2764164_SNP [dm3] 2L_2764164_SNP [dm6]	T	G	3.104e^-4	0.832	UTR_3_PRIME CG3077 DOWNSTREAM Trn-SR
X	19685438	X_19685438_SNP [dm3] X_19791405_SNP [dm6]	C	G	3.105e^-4	0.832	INTERGENIC
2L	1619341	2L_1619341_SNP [dm3] 2L_1619341_SNP [dm6]	G	A	3.108e^-4	0.832	DOWNSTREAM CR44603 EXON CR44603
2R	8484537	2R_8484537_INS [dm3] 2R_12597032_INS [dm6]	A	AAAAGAAGAAAAA...	3.110e^-4	0.832	INTRON Amph
2L	1612440	2L_1612440_SNP [dm3] 2L_1612440_SNP [dm6]	C	T	3.112e^-4	0.832	UTR_3_PRIME CG14352 & 1 other DOWNSTREAM RFeSP	TF binding site mE1_TFBS_inv
3R	12977048	3R_12977048_SNP [dm3] 3R_17151326_SNP [dm6]	C	T	3.113e^-4	0.832	SYNONYMOUS_CODING CG5285 UPSTREAM CG5292 DOWNSTREAM Det	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_ttk
2L	5780427	2L_5780427_SNP [dm3] 2L_5780427_SNP [dm6]	G	T	3.120e^-4	0.832	INTRON CG9171	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	9575411	3L_9575411_SNP [dm3] 3L_9582311_SNP [dm6]	T	C	3.145e^-4	0.832	INTRON CG42673
2R	14022420	2R_14022420_SNP [dm3] 2R_18134915_SNP [dm6]	A	T	3.155e^-4	0.832	UPSTREAM Pcl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	1619343	2L_1619343_DEL [dm3] 2L_1619343_DEL [dm6]	ATAATCGC	A	3.159e^-4	0.832	DOWNSTREAM CR44603 EXON CR44603
X	12874880	X_12874880_SNP [dm3] X_12980847_SNP [dm6]	A	G	3.169e^-4	0.832	INTERGENIC
3R	6945554	3R_6945554_DEL [dm3] 3R_11119832_DEL [dm6]	TAATAT	T	3.170e^-4	0.832	INTERGENIC
2R	16968923	2R_16968923_SNP [dm3] 2R_21081418_SNP [dm6]	G	A	3.172e^-4	0.832	INTRON Treh
3R	13442260	3R_13442260_SNP [dm3] 3R_17616538_SNP [dm6]	A	T	3.177e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
3L	17294891	3L_17294891_SNP [dm3] 3L_17301791_SNP [dm6]	A	T	3.178e^-4	0.832	INTERGENIC
3L	7501209	3L_7501209_SNP [dm3] 3L_7508109_SNP [dm6]	C	T	3.181e^-4	0.832	INTERGENIC
2R	20392421	2R_20392421_SNP [dm3] 2R_24504898_SNP [dm6]	G	A	3.181e^-4	0.832	INTERGENIC
2L	8788479	2L_8788479_SNP [dm3] 2L_8788479_SNP [dm6]	C	T	3.181e^-4	0.832	INTERGENIC
X	14777978	X_14777978_SNP [dm3] X_14883945_SNP [dm6]	A	G	3.183e^-4	0.832	INTRON Flo2
3L	17503118	3L_17503118_DEL [dm3] 3L_17510018_DEL [dm6]	AC	A	3.185e^-4	0.832	INTRON Oatp74D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12479215	2R_12479215_SNP [dm3] 2R_16591710_SNP [dm6]	T	C	3.185e^-4	0.832	INTRON CG8306
3R	25580897	3R_25580897_SNP [dm3] 3R_29755175_SNP [dm6]	A	G	3.188e^-4	0.832	DOWNSTREAM CR44953 & 1 other INTERGENIC
3R	22322678	3R_22322678_SNP [dm3] 3R_26496956_SNP [dm6]	C	T	3.189e^-4	0.832	INTRON plum
2R	10474399	2R_10474399_SNP [dm3] 2R_14586894_SNP [dm6]	G	C	3.190e^-4	0.832	UTR_3_PRIME ttv	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2R	11788652	2R_11788652_SNP [dm3] 2R_15901147_SNP [dm6]	G	T	3.191e^-4	0.832	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9594202	2R_9594202_SNP [dm3] 2R_13706697_SNP [dm6]	G	T	3.196e^-4	0.832	SYNONYMOUS_CODING fas	TF binding site mE1_TFBS_chinmo
3L	13769590	3L_13769590_SNP [dm3] 3L_13776490_SNP [dm6]	C	T	3.198e^-4	0.832	INTRON bru-3
2R	20313584	2R_20313584_SNP [dm3] 2R_24426061_SNP [dm6]	C	G	3.212e^-4	0.832	UPSTREAM CG42383 INTRON prom	TF binding site mE1_TFBS_chinmo
3L	11444591	3L_11444591_INS [dm3] 3L_11451491_INS [dm6]	A	AA	3.212e^-4	0.832	INTERGENIC
3R	24976253	3R_24976253_SNP [dm3] 3R_29150531_SNP [dm6]	C	A	3.220e^-4	0.832	SYNONYMOUS_CODING ligatin DOWNSTREAM Pglym78	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	2250009	2L_2250009_DEL [dm3] 2L_2250009_DEL [dm6]	CT	C	3.227e^-4	0.832	DOWNSTREAM Ser12 INTERGENIC
2R	20313596	2R_20313596_DEL [dm3] 2R_24426073_DEL [dm6]	GA	G	3.230e^-4	0.832	UPSTREAM CG42383 INTRON prom	TF binding site mE1_TFBS_chinmo
3L	1173343	3L_1173343_SNP [dm3] 3L_1173343_SNP [dm6]	T	C	3.232e^-4	0.832	SYNONYMOUS_CODING bab2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8221338	X_8221338_SNP [dm3] X_8327305_SNP [dm6]	A	T	3.238e^-4	0.832	INTRON nAChRalpha3
3R	13421956	3R_13421956_SNP [dm3] 3R_17596234_SNP [dm6]	G	T	3.246e^-4	0.832	UPSTREAM CG7606 DOWNSTREAM Sgs5 INTERGENIC
X	13709002	X_13709002_SNP [dm3] X_13814969_SNP [dm6]	T	C	3.246e^-4	0.832	INTRON Clic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu
3L	22663900	3L_22663900_SNP [dm3] 3L_22670800_SNP [dm6]	C	G	3.247e^-4	0.832	INTRON CG14457	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	3784831	2L_3784831_INS [dm3] 2L_3784831_INS [dm6]	GT	TCC	3.260e^-4	0.832	UPSTREAM CG31960 & 1 other DOWNSTREAM bowl INTERGENIC
3L	11127856	3L_11127856_SNP [dm3] 3L_11134756_SNP [dm6]	G	C	3.262e^-4	0.832	UPSTREAM CG14143 DOWNSTREAM CG42575 INTERGENIC
X	11566056	X_11566056_SNP [dm3] X_11672023_SNP [dm6]	C	T	3.262e^-4	0.832	SPLICE_SITE_REGION Ptp10D INTRON Ptp10D
2R	8522305	2R_8522305_SNP [dm3] 2R_12634800_SNP [dm6]	A	G	3.265e^-4	0.832	SYNONYMOUS_CODING CG33671 UTR_3_PRIME CG33672 DOWNSTREAM spt4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	21982970	3R_21982970_SNP [dm3] 3R_26157248_SNP [dm6]	G	A	3.282e^-4	0.832	INTERGENIC
3L	11614775	3L_11614775_SNP [dm3] 3L_11621675_SNP [dm6]	G	A	3.284e^-4	0.832	SYNONYMOUS_CODING CG6084	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13442156	3R_13442156_SNP [dm3] 3R_17616434_SNP [dm6]	A	C	3.292e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_zfh1
2L	4189932	2L_4189932_SNP [dm3] 2L_4189932_SNP [dm6]	C	T	3.311e^-4	0.832	UTR_3_PRIME CG3714 DOWNSTREAM lectin-24Db	TF binding site mE1_TFBS_cad
3L	7301336	3L_7301336_DEL [dm3] 3L_7308236_DEL [dm6]	AG	A	3.311e^-4	0.832	INTRON unc-13-4A
2R	8554428	2R_8554428_SNP [dm3] 2R_12666923_SNP [dm6]	A	C	3.312e^-4	0.832	INTRON nemy
3L	11121206	3L_11121206_DEL [dm3] 3L_11128106_DEL [dm6]	AA	A	3.313e^-4	0.832	INTRON CG42575
2R	13077123	2R_13077123_DEL [dm3] 2R_17189618_DEL [dm6]	TT	T	3.314e^-4	0.832	UPSTREAM CR44389 EXON CR45323
3L	910332	3L_910332_SNP [dm3] 3L_910332_SNP [dm6]	A	G	3.320e^-4	0.832	SYNONYMOUS_CODING nerfin-1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	6899154	3L_6899154_SNP [dm3] 3L_6906054_SNP [dm6]	T	A	3.328e^-4	0.832	INTERGENIC
2L	20611968	2L_20611968_SNP [dm3] 2L_20611968_SNP [dm6]	G	T	3.328e^-4	0.832	INTRON CR44909
2L	3329243	2L_3329243_SNP [dm3] 2L_3329243_SNP [dm6]	C	T	3.329e^-4	0.832	SYNONYMOUS_CODING CG33282
3R	19222115	3R_19222115_SNP [dm3] 3R_23396393_SNP [dm6]	T	C	3.330e^-4	0.832	INTERGENIC
3L	2537927	3L_2537927_SNP [dm3] 3L_2537927_SNP [dm6]	A	G	3.332e^-4	0.832	INTRON Spn
2L	11025003	2L_11025003_SNP [dm3] 2L_11025003_SNP [dm6]	A	G	3.335e^-4	0.832	INTRON Samuel
3L	2003168	3L_2003168_SNP [dm3] 3L_2003168_SNP [dm6]	C	A	3.341e^-4	0.832	UTR_3_PRIME CG42841
2L	4190531	2L_4190531_SNP [dm3] 2L_4190531_SNP [dm6]	C	A	3.343e^-4	0.832	INTRON CG3714	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4187897	2L_4187897_SNP [dm3] 2L_4187897_SNP [dm6]	T	C	3.345e^-4	0.832	UPSTREAM lectin-24Db & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	13904223	2L_13904223_SNP [dm3] 2L_13904223_SNP [dm6]	T	G	3.347e^-4	0.832	UTR_5_PRIME Smg5 UPSTREAM Smg5 INTRON Smg5	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
3L	4846403	3L_4846403_SNP [dm3] 3L_4846403_SNP [dm6]	G	T	3.348e^-4	0.832	INTERGENIC
3R	7151679	3R_7151679_SNP [dm3] 3R_11325957_SNP [dm6]	C	T	3.348e^-4	0.832	INTERGENIC
3R	25528278	3R_25528278_SNP [dm3] 3R_29702556_SNP [dm6]	A	T	3.348e^-4	0.832	INTERGENIC
3L	7272578	3L_7272578_SNP [dm3] 3L_7279478_SNP [dm6]	G	A	3.351e^-4	0.832	INTRON unc-13-4A
3R	16292687	3R_16292687_SNP [dm3] 3R_20466965_SNP [dm6]	G	A	3.353e^-4	0.832	INTRON Gfrl
2R	17958330	2R_17958330_SNP [dm3] 2R_22070825_SNP [dm6]	T	G	3.353e^-4	0.832	NON_SYNONYMOUS_CODING CG11475 DOWNSTREAM CG11474
X	20702797	X_20702797_SNP [dm3] X_20831770_SNP [dm6]	C	A	3.361e^-4	0.832	INTRON shakB
2L	10729320	2L_10729320_SNP [dm3] 2L_10729320_SNP [dm6]	C	T	3.362e^-4	0.832	UPSTREAM CG17118 DOWNSTREAM CG6431 INTRON CG6443	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	1175183	3L_1175183_SNP [dm3] 3L_1175183_SNP [dm6]	C	T	3.362e^-4	0.832	INTRON bab2	TF binding site BDTNP1_TFBS_dl
X	13918407	X_13918407_SNP [dm3] X_14024374_SNP [dm6]	A	G	3.367e^-4	0.832	DOWNSTREAM tRNA:S774:12Ec INTERGENIC
2L	3851925	2L_3851925_SNP [dm3] 2L_3851925_SNP [dm6]	A	G	3.369e^-4	0.832	UPSTREAM CR45451 INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	13236978	2L_13236978_SNP [dm3] 2L_13236978_SNP [dm6]	C	T	3.372e^-4	0.832	INTRON CG5867
2L	17186428	2L_17186428_SNP [dm3] 2L_17186428_SNP [dm6]	C	T	3.374e^-4	0.832	INTERGENIC
3L	4846361	3L_4846361_SNP [dm3] 3L_4846361_SNP [dm6]	G	A	3.376e^-4	0.832	INTERGENIC
2L	4533716	2L_4533716_SNP [dm3] 2L_4533716_SNP [dm6]	G	A	3.377e^-4	0.832	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_sens
2L	22127557	2L_22127557_SNP [dm3] 2L_22127557_SNP [dm6]	C	A	3.378e^-4	0.832	UTR_3_PRIME CycK DOWNSTREAM CG3651 & 1 other
3L	1175022	3L_1175022_SNP [dm3] 3L_1175022_SNP [dm6]	C	A	3.387e^-4	0.832	INTRON bab2
3L	1062877	3L_1062877_SNP [dm3] 3L_1062877_SNP [dm6]	G	C	3.390e^-4	0.832	INTRON bab1
3R	9830656	3R_9830656_SNP [dm3] 3R_14004934_SNP [dm6]	G	A	3.395e^-4	0.832	INTRON rdx
3R	13567812	3R_13567812_SNP [dm3] 3R_17742090_SNP [dm6]	A	T	3.397e^-4	0.832	INTRON TyrRII
2L	8189370	2L_8189370_SNP [dm3] 2L_8189370_SNP [dm6]	A	T	3.398e^-4	0.832	UTR_3_PRIME Piezo DOWNSTREAM CG34134
2R	11952145	2R_11952145_DEL [dm3] 2R_16064640_DEL [dm6]	TAC	T	3.407e^-4	0.832	DOWNSTREAM mir-137 INTERGENIC
2L	2742764	2L_2742764_SNP [dm3] 2L_2742764_SNP [dm6]	T	A	3.408e^-4	0.832	SYNONYMOUS_CODING Hrs DOWNSTREAM CG9961	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	21526586	X_21526586_SNP [dm3] X_21655559_SNP [dm6]	G	C	3.417e^-4	0.832	INTERGENIC	transposable element FlyBase
X	14080743	X_14080743_SNP [dm3] X_14186710_SNP [dm6]	A	G	3.431e^-4	0.832	UPSTREAM CG12481 DOWNSTREAM CG32603 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	16962744	2R_16962744_SNP [dm3] 2R_21075239_SNP [dm6]	G	A	3.444e^-4	0.832	UPSTREAM Treh INTRON Treh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	20504252	X_20504252_SNP [dm3] X_20633225_SNP [dm6]	G	A	3.450e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad
2L	4530516	2L_4530516_SNP [dm3] 2L_4530516_SNP [dm6]	T	C	3.450e^-4	0.832	INTRON dp	TF binding site mE1_TFBS_cad
2R	3894787	2R_3894787_SNP [dm3] 2R_8007282_SNP [dm6]	A	G	3.456e^-4	0.832	NON_SYNONYMOUS_CODING Odc2 DOWNSTREAM Odc1	TF binding site mE1_TFBS_cad
X	13874785	X_13874785_SNP [dm3] X_13980752_SNP [dm6]	T	C	3.460e^-4	0.832	INTRON mamo
2L	16657292	2L_16657292_SNP [dm3] 2L_16657292_SNP [dm6]	G	A	3.461e^-4	0.832	UTR_5_PRIME CG42389 INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
3L	2839078	3L_2839078_SNP [dm3] 3L_2839078_SNP [dm6]	G	T	3.462e^-4	0.832	INTRON CG43444	TF binding site BDTNP1_TFBS_dl
X	10865270	X_10865270_SNP [dm3] X_10971237_SNP [dm6]	T	G	3.468e^-4	0.832	INTRON CG42339
2R	5089217	2R_5089217_INS [dm3] 2R_9201712_INS [dm6]	A	AA	3.474e^-4	0.832	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_cad
2L	18941906	2L_18941906_SNP [dm3] 2L_18941906_SNP [dm6]	G	C	3.476e^-4	0.832	NON_SYNONYMOUS_CODING ssp3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25133834	3R_25133834_SNP [dm3] 3R_29308112_SNP [dm6]	T	A	3.477e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	12493694	3L_12493694_SNP [dm3] 3L_12500594_SNP [dm6]	T	G	3.484e^-4	0.832	UPSTREAM CG10681 DOWNSTREAM CR43868 INTRON CG10638	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20424375	X_20424375_DEL [dm3] X_20553348_DEL [dm6]	TTATTT	T	3.485e^-4	0.832	INTRON RunxB
X	8922130	X_8922130_SNP [dm3] X_9028097_SNP [dm6]	G	C	3.486e^-4	0.832	UTR_3_PRIME rdgA DOWNSTREAM rdgA INTRON CR43836
2L	8143361	2L_8143361_SNP [dm3] 2L_8143361_SNP [dm6]	A	G	3.489e^-4	0.832	DOWNSTREAM CG42762 INTRON CG8552	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
X	20717602	X_20717602_SNP [dm3] X_20846575_SNP [dm6]	T	A	3.505e^-4	0.832	INTRON shakB	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	8375620	2R_8375620_SNP [dm3] 2R_12488115_SNP [dm6]	A	G	3.525e^-4	0.832	UTR_3_PRIME fdl UPSTREAM CG34234 DOWNSTREAM fdl & 1 other
X	17326773	X_17326773_SNP [dm3] X_17432740_SNP [dm6]	A	G	3.525e^-4	0.832	INTRON CG12994
2R	17117854	2R_17117854_SNP [dm3] 2R_21230349_SNP [dm6]	G	T	3.526e^-4	0.832	INTRON ASPP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8287865	3L_8287865_SNP [dm3] 3L_8294765_SNP [dm6]	C	G	3.536e^-4	0.832	INTRON CG7201
2L	16756187	2L_16756187_SNP [dm3] 2L_16756187_SNP [dm6]	A	C	3.538e^-4	0.832	INTRON yellow-b
X	10804652	X_10804652_SNP [dm3] X_10910619_SNP [dm6]	A	C	3.538e^-4	0.832	INTRON CG43901	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	3483643	3R_3483643_SNP [dm3] 3R_7657921_SNP [dm6]	T	A	3.539e^-4	0.832	UPSTREAM Nlg1 INTERGENIC	TF binding site mE1_TFBS_inv
3L	6837443	3L_6837443_SNP [dm3] 3L_6844343_SNP [dm6]	G	T	3.544e^-4	0.832	INTERGENIC
2L	11028072	2L_11028072_SNP [dm3] 2L_11028072_SNP [dm6]	C	T	3.545e^-4	0.832	DOWNSTREAM Samuel INTRON Samuel
2L	21312546	2L_21312546_SNP [dm3] 2L_21312546_SNP [dm6]	T	A	3.547e^-4	0.832	INTRON crc	TF binding site mE1_TFBS_inv
2L	16656345	2L_16656345_SNP [dm3] 2L_16656345_SNP [dm6]	G	A	3.554e^-4	0.832	UPSTREAM CG42389 INTRON CG42389
X	14390400	X_14390400_SNP [dm3] X_14496367_SNP [dm6]	T	C	3.558e^-4	0.832	INTRON CG12540
2R	19505327	2R_19505327_SNP [dm3] 2R_23617804_SNP [dm6]	G	A	3.569e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	12726736	3R_12726736_SNP [dm3] 3R_16901014_SNP [dm6]	A	T	3.570e^-4	0.832	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	16652236	2L_16652236_SNP [dm3] 2L_16652236_SNP [dm6]	T	A	3.570e^-4	0.832	INTRON CG42389
X	20510049	X_20510049_MNP [dm3] X_20639022_MNP [dm6]	TAAT	ATTA	3.579e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	1126734	X_1126734_INS [dm3] X_1232701_INS [dm6]	C	CCC	3.583e^-4	0.832	INTRON CG3638	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	20509789	X_20509789_SNP [dm3] X_20638762_SNP [dm6]	T	C	3.586e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	6716637	2L_6716637_SNP [dm3] 2L_6716637_SNP [dm6]	T	C	3.588e^-4	0.832	UPSTREAM AkhR & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cnc mE1_TFBS_HSA
2R	11532861	2R_11532861_DEL [dm3] 2R_15645356_DEL [dm6]	TTACGAAT	T	3.589e^-4	0.832	INTRON CG42524	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	2680564	3L_2680564_SNP [dm3] 3L_2680564_SNP [dm6]	C	G	3.590e^-4	0.832	INTRON Fife
2R	15387985	2R_15387985_INS [dm3] 2R_19500480_INS [dm6]	T	TT	3.593e^-4	0.832	UTR_3_PRIME CG16926 DOWNSTREAM CG15120
3L	15731095	3L_15731095_SNP [dm3] 3L_15737995_SNP [dm6]	C	T	3.594e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	1612301	2L_1612301_SNP [dm3] 2L_1612301_SNP [dm6]	A	G	3.597e^-4	0.832	SYNONYMOUS_CODING CG14352 DOWNSTREAM RFeSP	TF binding site mE1_TFBS_inv
2R	6099147	2R_6099147_SNP [dm3] 2R_10211642_SNP [dm6]	G	A	3.603e^-4	0.832	UPSTREAM Hr46 INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	3441936	2L_3441936_SNP [dm3] 2L_3441936_SNP [dm6]	G	A	3.606e^-4	0.832	INTERGENIC
X	15869990	X_15869990_SNP [dm3] X_15975957_SNP [dm6]	T	A	3.613e^-4	0.832	UPSTREAM CG42766 INTRON Or13a
2L	16655672	2L_16655672_SNP [dm3] 2L_16655672_SNP [dm6]	T	C	3.614e^-4	0.832	INTRON CG42389
3R	17003232	3R_17003232_SNP [dm3] 3R_21177510_SNP [dm6]	G	C	3.618e^-4	0.832	INTRON SNF4Agamma
2R	8406893	2R_8406893_SNP [dm3] 2R_12519388_SNP [dm6]	C	T	3.625e^-4	0.832	UPSTREAM CG8818 INTRON CG8569	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10843505	2R_10843505_SNP [dm3] 2R_14956000_SNP [dm6]	T	A	3.631e^-4	0.832	INTRON aPKC
2L	9118913	2L_9118913_SNP [dm3] 2L_9118913_SNP [dm6]	A	G	3.631e^-4	0.832	UPSTREAM CR44617 INTERGENIC
2L	4387371	2L_4387371_SNP [dm3] 2L_4387371_SNP [dm6]	G	A	3.632e^-4	0.832	UPSTREAM Psf2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16558408	X_16558408_SNP [dm3] X_16664375_SNP [dm6]	C	G	3.636e^-4	0.832	NON_SYNONYMOUS_CODING CG15865 INTRON r
3R	10420289	3R_10420289_SNP [dm3] 3R_14594567_SNP [dm6]	A	T	3.636e^-4	0.832	INTRON stumps	regulatory region REDfly_CRMs
X	7244375	X_7244375_SNP [dm3] X_7350342_SNP [dm6]	T	C	3.638e^-4	0.832	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	7250620	3L_7250620_SNP [dm3] 3L_7257520_SNP [dm6]	C	G	3.640e^-4	0.832	INTRON CG14830
2L	17527170	2L_17527170_SNP [dm3] 2L_17527170_SNP [dm6]	T	C	3.640e^-4	0.832	SYNONYMOUS_CODING CG15144	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12720129	X_12720129_SNP [dm3] X_12826096_SNP [dm6]	A	T	3.645e^-4	0.832	INTRON Pde9
3R	9865216	3R_9865216_DEL [dm3] 3R_14039494_DEL [dm6]	AGGCTTTGGTT...	A	3.649e^-4	0.832	INTERGENIC
2L	2909441	2L_2909441_SNP [dm3] 2L_2909441_SNP [dm6]	C	T	3.652e^-4	0.832	INTRON lilli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	17374985	2L_17374985_SNP [dm3] 2L_17374985_SNP [dm6]	G	T	3.667e^-4	0.832	INTRON Lrch	TF binding site mE1_TFBS_cad
2L	2808499	2L_2808499_SNP [dm3] 2L_2808499_SNP [dm6]	C	G	3.679e^-4	0.832	START_GAINED daw UTR_5_PRIME daw INTRON daw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	19538252	3R_19538252_SNP [dm3] 3R_23712530_SNP [dm6]	A	T	3.680e^-4	0.832	DOWNSTREAM nau INTRON CG10300
X	19685441	X_19685441_SNP [dm3] X_19791408_SNP [dm6]	T	G	3.686e^-4	0.832	INTERGENIC
3L	1189582	3L_1189582_SNP [dm3] 3L_1189582_SNP [dm6]	T	A	3.691e^-4	0.832	UPSTREAM CG13912 DOWNSTREAM Trh INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	16233770	X_16233770_SNP [dm3] X_16339737_SNP [dm6]	A	G	3.704e^-4	0.832	UTR_3_PRIME Dsp1 DOWNSTREAM Dsp1	TF binding site mE1_TFBS_HSA
2R	19153963	2R_19153963_SNP [dm3] 2R_23266440_SNP [dm6]	G	C	3.729e^-4	0.832	UPSTREAM CG12782 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11736132	2R_11736132_SNP [dm3] 2R_15848627_SNP [dm6]	A	C	3.734e^-4	0.832	UTR_5_PRIME tun	TF binding site BDTNP1_TFBS_dl
2L	966539	2L_966539_SNP [dm3] 2L_966539_SNP [dm6]	G	C	3.735e^-4	0.832	INTERGENIC
3L	15759395	3L_15759395_SNP [dm3] 3L_15766295_SNP [dm6]	C	T	3.736e^-4	0.832	INTERGENIC
3R	22270866	3R_22270866_SNP [dm3] 3R_26445144_SNP [dm6]	C	A	3.737e^-4	0.832	INTRON tx
2R	11136066	2R_11136066_SNP [dm3] 2R_15248561_SNP [dm6]	A	T	3.744e^-4	0.832	UPSTREAM scb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3R	26878322	3R_26878322_SNP [dm3] 3R_31052600_SNP [dm6]	C	A	3.747e^-4	0.832	DOWNSTREAM l_3_03670 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	16925178	3L_16925178_SNP [dm3] 3L_16932078_SNP [dm6]	C	T	3.747e^-4	0.832	SYNONYMOUS_CODING CG11905 INTRON CG11905	TF binding site mE1_TFBS_chinmo
2L	17584415	2L_17584415_SNP [dm3] 2L_17584415_SNP [dm6]	A	C	3.752e^-4	0.832	DOWNSTREAM CR45112 EXON CR45111
3L	11120415	3L_11120415_SNP [dm3] 3L_11127315_SNP [dm6]	T	A	3.759e^-4	0.832	INTRON CG42575
2L	18873457	2L_18873457_INS [dm3] 2L_18873457_INS [dm6]	T	GATATATATAAA...	3.771e^-4	0.832	INTRON tup	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	24980037	3R_24980037_SNP [dm3] 3R_29154315_SNP [dm6]	T	C	3.773e^-4	0.832	SYNONYMOUS_CODING Rpn2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_sens
2R	8517699	2R_8517699_SNP [dm3] 2R_12630194_SNP [dm6]	T	G	3.775e^-4	0.832	NON_SYNONYMOUS_CODING muskelin
3R	18395045	3R_18395045_SNP [dm3] 3R_22569323_SNP [dm6]	A	T	3.782e^-4	0.832	UPSTREAM CG33110 INTERGENIC	TF binding site mE1_TFBS_inv
3L	5603539	3L_5603539_DEL [dm3] 3L_5610439_DEL [dm6]	CA	C	3.784e^-4	0.832	INTERGENIC
2R	3908916	2R_3908916_SNP [dm3] 2R_8021411_SNP [dm6]	A	C	3.784e^-4	0.832	EXON CR45267	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	2118135	3L_2118135_SNP [dm3] 3L_2118135_SNP [dm6]	A	G	3.801e^-4	0.832	INTRON zormin
X	13775418	X_13775418_SNP [dm3] X_13881385_SNP [dm6]	C	A	3.801e^-4	0.832	INTRON mamo
2R	19505258	2R_19505258_SNP [dm3] 2R_23617735_SNP [dm6]	G	A	3.804e^-4	0.832	UPSTREAM CG17664 INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	11735476	2R_11735476_SNP [dm3] 2R_15847971_SNP [dm6]	C	A	3.811e^-4	0.832	UPSTREAM CG8249 & 1 other INTRON tun	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1 mE1_TFBS_HSA
2R	8521816	2R_8521816_SNP [dm3] 2R_12634311_SNP [dm6]	A	C	3.814e^-4	0.832	SYNONYMOUS_CODING CG33671 UTR_3_PRIME CG33672 DOWNSTREAM CG33792 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	1989030	2L_1989030_SNP [dm3] 2L_1989030_SNP [dm6]	A	T	3.815e^-4	0.832	UPSTREAM CR42874 DOWNSTREAM Npc2a INTERGENIC
2L	14070392	2L_14070392_INS [dm3] 2L_14070392_INS [dm6]	A	AAT	3.816e^-4	0.832	INTRON nAChRalpha5
3L	5233145	3L_5233145_SNP [dm3] 3L_5240045_SNP [dm6]	A	G	3.818e^-4	0.832	INTRON shep
3L	17280352	3L_17280352_SNP [dm3] 3L_17287252_SNP [dm6]	G	A	3.820e^-4	0.832	INTERGENIC
3R	26878326	3R_26878326_SNP [dm3] 3R_31052604_SNP [dm6]	G	C	3.828e^-4	0.832	DOWNSTREAM l_3_03670 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	15606962	3L_15606962_SNP [dm3] 3L_15613862_SNP [dm6]	G	T	3.833e^-4	0.832	SYNONYMOUS_CODING comm3
2R	20403307	2R_20403307_SNP [dm3] 2R_24515784_SNP [dm6]	C	T	3.834e^-4	0.832	SYNONYMOUS_CODING Ir60b UPSTREAM Letm1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_sens
2L	1987966	2L_1987966_SNP [dm3] 2L_1987966_SNP [dm6]	A	T	3.845e^-4	0.832	UPSTREAM Npc2a & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4220700	2R_4220700_SNP [dm3] 2R_8333195_SNP [dm6]	G	A	3.845e^-4	0.832	INTRON pdm3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3R	16170690	3R_16170690_SNP [dm3] 3R_20344968_SNP [dm6]	G	T	3.847e^-4	0.832	INTERGENIC
2L	13239771	2L_13239771_SNP [dm3] 2L_13239771_SNP [dm6]	T	A	3.855e^-4	0.832	UPSTREAM CG5945 DOWNSTREAM CG5867 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	15933800	3L_15933800_SNP [dm3] 3L_15940700_SNP [dm6]	A	G	3.857e^-4	0.832	INTRON Pka-C3
3L	13484805	3L_13484805_DEL [dm3] 3L_13491705_DEL [dm6]	AAGGGACTCATCATCA...	A	3.860e^-4	0.832	INTRON Tgi
2R	12272565	2R_12272565_SNP [dm3] 2R_16385060_SNP [dm6]	G	A	3.864e^-4	0.832	UTR_3_PRIME CG43187
2L	1604653	2L_1604653_SNP [dm3] 2L_1604653_SNP [dm6]	G	A	3.869e^-4	0.832	INTRON CG31935 & 1 other
X	16611256	X_16611256_SNP [dm3] X_16717223_SNP [dm6]	G	A	3.883e^-4	0.832	INTRON CG34325
X	16611259	X_16611259_SNP [dm3] X_16717226_SNP [dm6]	A	C	3.883e^-4	0.832	INTRON CG34325
X	16611273	X_16611273_SNP [dm3] X_16717240_SNP [dm6]	C	T	3.883e^-4	0.832	INTRON CG34325
X	10824306	X_10824306_SNP [dm3] X_10930273_SNP [dm6]	G	A	3.886e^-4	0.832	UPSTREAM Myo10A DOWNSTREAM CG2145 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
2L	16173290	2L_16173290_SNP [dm3] 2L_16173290_SNP [dm6]	T	A	3.887e^-4	0.832	INTRON Ca-alpha1D	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	14779393	X_14779393_SNP [dm3] X_14885360_SNP [dm6]	A	G	3.892e^-4	0.832	DOWNSTREAM CG9514 INTRON Flo2
2L	8785938	2L_8785938_SNP [dm3] 2L_8785938_SNP [dm6]	T	C	3.894e^-4	0.832	INTERGENIC
X	3731418	X_3731418_SNP [dm3] X_3837385_SNP [dm6]	C	T	3.896e^-4	0.832	INTRON ec	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
3L	7442222	3L_7442222_SNP [dm3] 3L_7449122_SNP [dm6]	T	A	3.899e^-4	0.832	INTRON CG42458
2L	17156714	2L_17156714_SNP [dm3] 2L_17156714_SNP [dm6]	C	G	3.901e^-4	0.832	INTRON beat-IIIa & 1 other
3R	26879786	3R_26879786_SNP [dm3] 3R_31054064_SNP [dm6]	A	C	3.903e^-4	0.832	UPSTREAM l_3_03670 DOWNSTREAM dco INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2L	17581955	2L_17581955_SNP [dm3] 2L_17581955_SNP [dm6]	T	C	3.904e^-4	0.832	INTERGENIC
2R	3818331	2R_3818331_SNP [dm3] 2R_7930826_SNP [dm6]	T	C	3.917e^-4	0.832	DOWNSTREAM CG8791 & 1 other INTRON CG30381	TF binding site mE1_TFBS_sens
3L	2805403	3L_2805403_SNP [dm3] 3L_2805403_SNP [dm6]	T	C	3.918e^-4	0.832	INTRON CG43444
2R	20314738	2R_20314738_SNP [dm3] 2R_24427215_SNP [dm6]	C	T	3.926e^-4	0.832	INTRON prom
2R	6864320	2R_6864320_SNP [dm3] 2R_10976815_SNP [dm6]	G	A	3.931e^-4	0.832	INTERGENIC
2L	2642342	2L_2642342_SNP [dm3] 2L_2642342_SNP [dm6]	C	G	3.938e^-4	0.832	INTERGENIC
2L	22141272	2L_22141272_SNP [dm3] 2L_22141272_SNP [dm6]	G	C	3.938e^-4	0.832	INTRON CG42748
2R	6106429	2R_6106429_SNP [dm3] 2R_10218924_SNP [dm6]	T	G	3.939e^-4	0.832	INTRON Hr46 & 1 other
2L	11956052	2L_11956052_SNP [dm3] 2L_11956052_SNP [dm6]	G	A	3.944e^-4	0.832	DOWNSTREAM CR43314 EXON CR43314	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	22115469	3L_22115469_SNP [dm3] 3L_22122369_SNP [dm6]	G	A	3.945e^-4	0.832	UPSTREAM CR45235 DOWNSTREAM CR45236 INTERGENIC
X	12720893	X_12720893_SNP [dm3] X_12826860_SNP [dm6]	C	A	3.946e^-4	0.832	INTRON Pde9
3R	13567775	3R_13567775_SNP [dm3] 3R_17742053_SNP [dm6]	A	C	3.948e^-4	0.832	INTRON TyrRII
2R	16532644	2R_16532644_SNP [dm3] 2R_20645139_SNP [dm6]	T	C	3.949e^-4	0.832	SYNONYMOUS_CODING DMAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	5923248	2R_5923248_SNP [dm3] 2R_10035743_SNP [dm6]	C	T	3.953e^-4	0.832	UTR_3_PRIME oys DOWNSTREAM oys
2L	3329359	2L_3329359_SNP [dm3] 2L_3329359_SNP [dm6]	T	G	3.954e^-4	0.832	SPLICE_SITE_REGION CG33282 INTRON CG33282
2L	13429110	2L_13429110_SNP [dm3] 2L_13429110_SNP [dm6]	T	A	3.955e^-4	0.832	INTRON CG42784
2R	13076785	2R_13076785_SNP [dm3] 2R_17189280_SNP [dm6]	G	A	3.955e^-4	0.832	UPSTREAM CR45323 & 1 other INTERGENIC
3L	16094878	3L_16094878_SNP [dm3] 3L_16101778_SNP [dm6]	A	G	3.961e^-4	0.832	NON_SYNONYMOUS_CODING CG5414	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10174167	3R_10174167_SNP [dm3] 3R_14348445_SNP [dm6]	A	T	3.962e^-4	0.832	INTRON NK7.1
3L	10221419	3L_10221419_SNP [dm3] 3L_10228319_SNP [dm6]	G	A	3.967e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2L	16111690	2L_16111690_SNP [dm3] 2L_16111690_SNP [dm6]	A	C	3.970e^-4	0.832	INTERGENIC
3L	5197517	3L_5197517_SNP [dm3] 3L_5204417_SNP [dm6]	C	A	3.981e^-4	0.832	INTRON shep
3L	3181781	3L_3181781_SNP [dm3] 3L_3181781_SNP [dm6]	C	T	3.982e^-4	0.832	NON_SYNONYMOUS_CODING Girdin
2L	17798162	2L_17798162_SNP [dm3] 2L_17798162_SNP [dm6]	C	A	3.984e^-4	0.832	NON_SYNONYMOUS_CODING CadN2
3R	24858481	3R_24858481_SNP [dm3] 3R_29032759_SNP [dm6]	T	A	3.986e^-4	0.832	UTR_3_PRIME beta4GalNAcTB UPSTREAM Ssl2 EXON CR45044	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D
3R	13821336	3R_13821336_SNP [dm3] 3R_17995614_SNP [dm6]	C	G	3.995e^-4	0.832	INTRON cpo
2L	16657205	2L_16657205_SNP [dm3] 2L_16657205_SNP [dm6]	A	G	3.998e^-4	0.832	UTR_5_PRIME CG42389 INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
X	14084966	X_14084966_SNP [dm3] X_14190933_SNP [dm6]	T	C	4.004e^-4	0.832	DOWNSTREAM CG13403 & 1 other INTERGENIC
3R	13441587	3R_13441587_SNP [dm3] 3R_17615865_SNP [dm6]	G	T	4.005e^-4	0.832	DOWNSTREAM CG14327 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	6437994	3L_6437994_SNP [dm3] 3L_6444894_SNP [dm6]	G	A	4.013e^-4	0.832	INTRON CG42747
2L	17429784	2L_17429784_SNP [dm3] 2L_17429784_SNP [dm6]	G	A	4.016e^-4	0.832	INTRON Dif EXON CR44409
3R	19055902	3R_19055902_DEL [dm3] 3R_23230180_DEL [dm6]	CATAC	C	4.021e^-4	0.832	UTR_3_PRIME CG4467
3L	6437993	3L_6437993_SNP [dm3] 3L_6444893_SNP [dm6]	A	C	4.026e^-4	0.832	INTRON CG42747
X	14663538	X_14663538_SNP [dm3] X_14769505_SNP [dm6]	G	A	4.034e^-4	0.832	INTERGENIC
3R	9500498	3R_9500498_SNP [dm3] 3R_13674776_SNP [dm6]	A	T	4.046e^-4	0.832	UPSTREAM Task6 DOWNSTREAM CG9588 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sbb mE1_TFBS_Trl
3L	7482052	3L_7482052_DEL [dm3] 3L_7488952_DEL [dm6]	TT	T	4.057e^-4	0.832	INTERGENIC
3L	5966558	3L_5966558_INS [dm3] 3L_5973458_INS [dm6]	T	TATCT	4.065e^-4	0.832	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	19968488	2L_19968488_SNP [dm3] 2L_19968488_SNP [dm6]	G	C	4.067e^-4	0.832	UPSTREAM Hf DOWNSTREAM CG43861 INTERGENIC
3R	12561389	3R_12561389_SNP [dm3] 3R_16735667_SNP [dm6]	G	A	4.070e^-4	0.832	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z
2R	18708225	2R_18708225_SNP [dm3] 2R_22820720_SNP [dm6]	A	T	4.072e^-4	0.832	NON_SYNONYMOUS_CODING CG30271 UPSTREAM CG42284 INTRON CG30271	TF binding site mE1_TFBS_chinmo
X	19350360	X_19350360_SNP [dm3] X_19456327_SNP [dm6]	G	C	4.075e^-4	0.832	INTRON kek5
3L	17254768	3L_17254768_SNP [dm3] 3L_17261668_SNP [dm6]	A	T	4.091e^-4	0.832	INTRON CR43870
X	12909517	X_12909517_SNP [dm3] X_13015484_SNP [dm6]	C	A	4.092e^-4	0.832	INTRON rad
3L	6720940	3L_6720940_SNP [dm3] 3L_6727840_SNP [dm6]	G	A	4.097e^-4	0.832	UPSTREAM CR45417 DOWNSTREAM dikar INTERGENIC	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_twi
3L	10846832	3L_10846832_SNP [dm3] 3L_10853732_SNP [dm6]	C	A	4.100e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	2643184	2L_2643184_INS [dm3] 2L_2643184_INS [dm6]	G	GTTGGCAGTTT...	4.103e^-4	0.832	INTERGENIC
2L	6532875	2L_6532875_INS [dm3] 2L_6532875_INS [dm6]	T	TAT	4.107e^-4	0.832	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13485790	2R_13485790_SNP [dm3] 2R_17598285_SNP [dm6]	G	A	4.107e^-4	0.832	DOWNSTREAM CG11423 & 1 other INTRON lack	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19436364	X_19436364_SNP [dm3] X_19542331_SNP [dm6]	T	A	4.110e^-4	0.832	INTRON CG32532
2L	4190683	2L_4190683_SNP [dm3] 2L_4190683_SNP [dm6]	T	A	4.111e^-4	0.832	SYNONYMOUS_CODING CG3714	TF binding site mE1_TFBS_cad
2L	4190500	2L_4190500_SNP [dm3] 2L_4190500_SNP [dm6]	A	G	4.126e^-4	0.832	SPLICE_SITE_REGION CG3714 INTRON CG3714	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	14622945	X_14622945_SNP [dm3] X_14728912_SNP [dm6]	G	A	4.131e^-4	0.832	INTRON NetB
2L	2734748	2L_2734748_SNP [dm3] 2L_2734748_SNP [dm6]	C	T	4.133e^-4	0.832	INTRON CG31689
2L	12401819	2L_12401819_DEL [dm3] 2L_12401819_DEL [dm6]	TG	T	4.143e^-4	0.832	UTR_3_PRIME Pkd2
2R	1211589	2R_1211589_INS [dm3] 2R_5324084_INS [dm6]	T	TATAA	4.144e^-4	0.832	INTRON sxc	transposable element FlyBase
X	11188777	X_11188777_SNP [dm3] X_11294744_SNP [dm6]	T	A	4.150e^-4	0.832	INTRON CG44422	TF binding site BDTNP1_TFBS_dl
X	14622935	X_14622935_SNP [dm3] X_14728902_SNP [dm6]	T	G	4.157e^-4	0.832	INTRON NetB
2L	1614323	2L_1614323_SNP [dm3] 2L_1614323_SNP [dm6]	G	A	4.159e^-4	0.832	UPSTREAM RFeSP INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
2L	20253225	2L_20253225_SNP [dm3] 2L_20253225_SNP [dm6]	A	T	4.159e^-4	0.832	DOWNSTREAM CR40465 INTERGENIC
2R	20217823	2R_20217823_SNP [dm3] 2R_24330300_SNP [dm6]	G	A	4.159e^-4	0.832	DOWNSTREAM CR44810 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	11305657	3L_11305657_SNP [dm3] 3L_11312557_SNP [dm6]	C	T	4.163e^-4	0.832	SYNONYMOUS_CODING CG7573
2L	16403699	2L_16403699_SNP [dm3] 2L_16403699_SNP [dm6]	G	A	4.163e^-4	0.832	INTRON CG5888
3L	15933860	3L_15933860_DEL [dm3] 3L_15940760_DEL [dm6]	AACTCA	G	4.165e^-4	0.832	INTRON Pka-C3
3L	2948431	3L_2948431_SNP [dm3] 3L_2948431_SNP [dm6]	T	A	4.171e^-4	0.832	INTRON Shab
2L	4187809	2L_4187809_SNP [dm3] 2L_4187809_SNP [dm6]	A	C	4.172e^-4	0.832	UPSTREAM lectin-24Db & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	6899265	3L_6899265_SNP [dm3] 3L_6906165_SNP [dm6]	G	A	4.173e^-4	0.832	INTERGENIC
2L	3938343	2L_3938343_SNP [dm3] 2L_3938343_SNP [dm6]	A	G	4.178e^-4	0.832	INTRON fred
3R	26878120	3R_26878120_SNP [dm3] 3R_31052398_SNP [dm6]	G	T	4.186e^-4	0.832	NON_SYNONYMOUS_CODING Aph-4 DOWNSTREAM l_3_03670	TF binding site mE1_TFBS_sbb
2R	9360966	2R_9360966_SNP [dm3] 2R_13473461_SNP [dm6]	C	A	4.189e^-4	0.832	INTRON arr
2L	4190509	2L_4190509_SNP [dm3] 2L_4190509_SNP [dm6]	A	T	4.193e^-4	0.832	INTRON CG3714	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16656844	2L_16656844_DEL [dm3] 2L_16656844_DEL [dm6]	ACTATAA	A	4.198e^-4	0.832	UPSTREAM CG42389 INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Ubx
3L	1996667	3L_1996667_SNP [dm3] 3L_1996667_SNP [dm6]	A	G	4.201e^-4	0.832	INTERGENIC
X	6651063	X_6651063_SNP [dm3] X_6757030_SNP [dm6]	G	C	4.207e^-4	0.832	INTRON CG14438	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	18395041	3R_18395041_SNP [dm3] 3R_22569319_SNP [dm6]	T	C	4.213e^-4	0.832	UPSTREAM CG33110 INTERGENIC	TF binding site mE1_TFBS_inv
3L	1187717	3L_1187717_SNP [dm3] 3L_1187717_SNP [dm6]	G	C	4.214e^-4	0.832	INTERGENIC
3L	7184949	3L_7184949_SNP [dm3] 3L_7191849_SNP [dm6]	T	G	4.233e^-4	0.832	INTERGENIC
3R	25398191	3R_25398191_SNP [dm3] 3R_29572469_SNP [dm6]	G	A	4.235e^-4	0.832	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	9691016	2R_9691016_SNP [dm3] 2R_13803511_SNP [dm6]	T	G	4.243e^-4	0.832	INTRON Cpr50Cb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	11880847	3L_11880847_SNP [dm3] 3L_11887747_SNP [dm6]	C	A	4.259e^-4	0.832	UTR_3_PRIME CG5897 INTRON CG44837
3R	4079875	3R_4079875_SNP [dm3] 3R_8254153_SNP [dm6]	C	T	4.262e^-4	0.832	INTRON mtg	TF binding site mE1_TFBS_cnc
2L	1622515	2L_1622515_SNP [dm3] 2L_1622515_SNP [dm6]	G	A	4.264e^-4	0.832	EXON CR44603
3L	2001857	3L_2001857_SNP [dm3] 3L_2001857_SNP [dm6]	G	C	4.264e^-4	0.832	INTERGENIC
X	16889418	X_16889418_SNP [dm3] X_16995385_SNP [dm6]	G	A	4.265e^-4	0.832	INTRON CG45002
3R	4104293	3R_4104293_SNP [dm3] 3R_8278571_SNP [dm6]	G	C	4.267e^-4	0.832	NON_SYNONYMOUS_CODING ato	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	17235390	2L_17235390_SNP [dm3] 2L_17235390_SNP [dm6]	A	T	4.270e^-4	0.832	INTRON beat-IIIc
X	12720369	X_12720369_SNP [dm3] X_12826336_SNP [dm6]	C	T	4.271e^-4	0.832	INTRON Pde9
2L	13057297	2L_13057297_SNP [dm3] 2L_13057297_SNP [dm6]	G	T	4.280e^-4	0.832	INTRON CG9932
2L	17304804	2L_17304804_SNP [dm3] 2L_17304804_SNP [dm6]	T	A	4.286e^-4	0.832	INTERGENIC
X	20505716	X_20505716_SNP [dm3] X_20634689_SNP [dm6]	T	C	4.287e^-4	0.832	INTERGENIC
2L	13916342	2L_13916342_SNP [dm3] 2L_13916342_SNP [dm6]	G	A	4.293e^-4	0.832	INTRON Ance-3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9744094	3R_9744094_SNP [dm3] 3R_13918372_SNP [dm6]	G	A	4.293e^-4	0.832	INTERGENIC
3R	18395046	3R_18395046_SNP [dm3] 3R_22569324_SNP [dm6]	T	A	4.294e^-4	0.832	UPSTREAM CG33110 INTERGENIC	TF binding site mE1_TFBS_inv
3L	18964220	3L_18964220_SNP [dm3] 3L_18971120_SNP [dm6]	T	A	4.297e^-4	0.832	INTERGENIC
2R	4855308	2R_4855308_SNP [dm3] 2R_8967803_SNP [dm6]	A	T	4.310e^-4	0.832	INTRON CG8216
2R	4855329	2R_4855329_SNP [dm3] 2R_8967824_SNP [dm6]	C	T	4.310e^-4	0.832	INTRON CG8216
3L	10262761	3L_10262761_SNP [dm3] 3L_10269661_SNP [dm6]	G	A	4.312e^-4	0.832	EXON CR45242	regulatory region REDfly_CRMs
2R	16988288	2R_16988288_SNP [dm3] 2R_21100783_SNP [dm6]	A	G	4.314e^-4	0.832	SYNONYMOUS_CODING CG34396	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_inv
3L	2537056	3L_2537056_SNP [dm3] 3L_2537056_SNP [dm6]	C	G	4.315e^-4	0.832	UPSTREAM Spn INTRON Spn	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	2537057	3L_2537057_SNP [dm3] 3L_2537057_SNP [dm6]	C	T	4.315e^-4	0.832	UPSTREAM Spn INTRON Spn	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	17156772	2L_17156772_INS [dm3] 2L_17156772_INS [dm6]	T	TA	4.325e^-4	0.832	INTRON beat-IIIa & 1 other
2L	4503748	2L_4503748_SNP [dm3] 2L_4503748_SNP [dm6]	T	C	4.326e^-4	0.832	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1988011	2L_1988011_SNP [dm3] 2L_1988011_SNP [dm6]	T	C	4.327e^-4	0.832	UPSTREAM Npc2a & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20000698	3R_20000698_SNP [dm3] 3R_24174976_SNP [dm6]	T	C	4.330e^-4	0.832	INTRON CG13606	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12401780	2L_12401780_SNP [dm3] 2L_12401780_SNP [dm6]	C	A	4.336e^-4	0.832	UTR_3_PRIME Pkd2
2L	17782703	2L_17782703_SNP [dm3] 2L_17782703_SNP [dm6]	T	C	4.355e^-4	0.832	INTERGENIC
2L	19700104	2L_19700104_SNP [dm3] 2L_19700104_SNP [dm6]	G	C	4.363e^-4	0.832	SYNONYMOUS_CODING scw INTRON Lar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	1614240	2L_1614240_SNP [dm3] 2L_1614240_SNP [dm6]	A	G	4.363e^-4	0.832	UPSTREAM RFeSP INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
2R	16092282	2R_16092282_SNP [dm3] 2R_20204777_SNP [dm6]	T	C	4.367e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	8472126	3L_8472126_SNP [dm3] 3L_8479026_SNP [dm6]	T	A	4.372e^-4	0.832	SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10824307	X_10824307_SNP [dm3] X_10930274_SNP [dm6]	G	T	4.374e^-4	0.832	UPSTREAM Myo10A DOWNSTREAM CG2145 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
2L	22318990	2L_22318990_SNP [dm3] 2L_22318990_SNP [dm6]	G	A	4.396e^-4	0.832	INTRON CG17018
2L	1989007	2L_1989007_SNP [dm3] 2L_1989007_SNP [dm6]	A	C	4.398e^-4	0.832	UPSTREAM CR42874 DOWNSTREAM Npc2a INTERGENIC	TF binding site mE1_TFBS_cad
X	19436363	X_19436363_SNP [dm3] X_19542330_SNP [dm6]	G	C	4.399e^-4	0.832	INTRON CG32532
2R	3683770	2R_3683770_SNP [dm3] 2R_7796265_SNP [dm6]	A	C	4.407e^-4	0.832	NON_SYNONYMOUS_CODING mus205
3L	5233340	3L_5233340_SNP [dm3] 3L_5240240_SNP [dm6]	A	T	4.413e^-4	0.832	INTRON shep
3L	12613444	3L_12613444_SNP [dm3] 3L_12620344_SNP [dm6]	G	A	4.424e^-4	0.832	SYNONYMOUS_CODING caup	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17182580	2L_17182580_SNP [dm3] 2L_17182580_SNP [dm6]	A	C	4.428e^-4	0.832	NON_SYNONYMOUS_CODING CG31750 DOWNSTREAM Gr36c
3L	6978456	3L_6978456_INS [dm3] 3L_6985356_INS [dm6]	T	TC	4.432e^-4	0.832	UPSTREAM CG32388 & 1 other INTERGENIC
2L	7758884	2L_7758884_SNP [dm3] 2L_7758884_SNP [dm6]	T	C	4.437e^-4	0.832	INTRON CG7196
3L	2437029	3L_2437029_SNP [dm3] 3L_2437029_SNP [dm6]	G	A	4.443e^-4	0.832	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16656659	2L_16656659_SNP [dm3] 2L_16656659_SNP [dm6]	C	G	4.448e^-4	0.832	UPSTREAM CG42389 INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Ubx
X	3821654	X_3821654_SNP [dm3] X_3927621_SNP [dm6]	C	T	4.450e^-4	0.832	INTRON CG42541
X	2691559	X_2691559_SNP [dm3] X_2797526_SNP [dm6]	A	T	4.455e^-4	0.832	INTRON kirre
3L	19324665	3L_19324665_SNP [dm3] 3L_19331565_SNP [dm6]	A	T	4.463e^-4	0.832	INTRON pip
2R	20403463	2R_20403463_SNP [dm3] 2R_24515940_SNP [dm6]	T	G	4.481e^-4	0.832	SYNONYMOUS_CODING Ir60b UPSTREAM Letm1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
2R	13077615	2R_13077615_SNP [dm3] 2R_17190110_SNP [dm6]	C	A	4.500e^-4	0.832	DOWNSTREAM CR45323 INTERGENIC
2R	9420329	2R_9420329_SNP [dm3] 2R_13532824_SNP [dm6]	A	G	4.505e^-4	0.832	UTR_5_PRIME Vmat INTRON Vmat	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	1622972	3L_1622972_SNP [dm3] 3L_1622972_SNP [dm6]	A	T	4.506e^-4	0.832	NON_SYNONYMOUS_CODING ABCB7 DOWNSTREAM GC	TF binding site mE1_TFBS_cad
3L	1937583	3L_1937583_SNP [dm3] 3L_1937583_SNP [dm6]	G	A	4.507e^-4	0.832	INTRON CG5687

By genomic position
Variant impact
Gene name

Mitochon_Breadth_Cov phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results