DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.653e^-14)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2R_NS	0.005523
In_3R_K	0.005510
In_3R_Mo	0.011828

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1954 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	16292687	3R_16292687_SNP [dm3] 3R_20466965_SNP [dm6]	G	A	4.742e^-8	0.089	INTRON Gfrl
3L	6532070	3L_6532070_SNP [dm3] 3L_6538970_SNP [dm6]	T	C	1.125e^-6	0.598	INTRON sfl
2R	12807373	2R_12807373_SNP [dm3] 2R_16919868_SNP [dm6]	A	T	2.380e^-6	0.598	INTERGENIC
2L	4388973	2L_4388973_SNP [dm3] 2L_4388973_SNP [dm6]	A	G	2.694e^-6	0.598	INTRON Tps1
2R	12273989	2R_12273989_SNP [dm3] 2R_16386484_SNP [dm6]	A	G	2.718e^-6	0.598	UPSTREAM Sema-2b DOWNSTREAM CG43187 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	12807372	2R_12807372_SNP [dm3] 2R_16919867_SNP [dm6]	T	A	2.723e^-6	0.598	INTERGENIC
2R	12274090	2R_12274090_SNP [dm3] 2R_16386585_SNP [dm6]	G	A	2.875e^-6	0.598	UTR_5_PRIME Sema-2b DOWNSTREAM CG43187	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	3661188	X_3661188_SNP [dm3] X_3767155_SNP [dm6]	C	T	2.961e^-6	0.598	INTRON tlk
2L	16500604	2L_16500604_SNP [dm3] 2L_16500604_SNP [dm6]	T	C	3.508e^-6	0.598	INTRON Tpr2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12274022	2R_12274022_SNP [dm3] 2R_16386517_SNP [dm6]	A	T	3.653e^-6	0.598	UPSTREAM Sema-2b DOWNSTREAM CG43187 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	4389054	2L_4389054_SNP [dm3] 2L_4389054_SNP [dm6]	T	C	3.811e^-6	0.598	INTRON Tps1
3L	22779791	3L_22779791_INS [dm3] 3L_22786691_INS [dm6]	T	TAT	4.290e^-6	0.598	UTR_3_PRIME SPoCk
X	3818560	X_3818560_SNP [dm3] X_3924527_SNP [dm6]	A	G	4.698e^-6	0.598	INTRON CG42541
2R	18552034	2R_18552034_INS [dm3] 2R_22664529_INS [dm6]	G	AGACTTGGTTTGTATCACAA...	4.705e^-6	0.598	DOWNSTREAM CG4250 INTERGENIC
X	2670126	X_2670126_SNP [dm3] X_2776093_SNP [dm6]	T	G	4.779e^-6	0.598	INTRON kirre
2R	12273672	2R_12273672_SNP [dm3] 2R_16386167_SNP [dm6]	T	A	6.002e^-6	0.704	UPSTREAM Sema-2b DOWNSTREAM CG43187 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	2670124	X_2670124_SNP [dm3] X_2776091_SNP [dm6]	A	T	7.947e^-6	0.8	INTRON kirre
2R	12274094	2R_12274094_SNP [dm3] 2R_16386589_SNP [dm6]	T	G	7.955e^-6	0.8	UTR_5_PRIME Sema-2b DOWNSTREAM CG43187	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	12274076	2R_12274076_SNP [dm3] 2R_16386571_SNP [dm6]	A	G	8.106e^-6	0.8	START_GAINED Sema-2b UTR_5_PRIME Sema-2b DOWNSTREAM CG43187	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	11117636	X_11117636_SNP [dm3] X_11223603_SNP [dm6]	T	C	9.471e^-6	0.883	UTR_3_PRIME CG44422 DOWNSTREAM CG44422 INTRON CG44422
3L	4891616	3L_4891616_SNP [dm3] 3L_4891616_SNP [dm6]	A	G	1.117e^-5	0.883	INTRON CG17150	TF binding site mE1_TFBS_chinmo
3R	16292858	3R_16292858_DEL [dm3] 3R_20467136_DEL [dm6]	CGTAAGGTTGAGTAGTTTGT...	C	1.124e^-5	0.883	INTRON Gfrl
X	14945539	X_14945539_SNP [dm3] X_15051506_SNP [dm6]	G	C	1.147e^-5	0.883	UTR_3_PRIME CG5541 INTRON hiw
2R	18552038	2R_18552038_INS [dm3] 2R_22664533_INS [dm6]	A	ACGT	1.159e^-5	0.883	DOWNSTREAM CG4250 INTERGENIC
2R	12273658	2R_12273658_SNP [dm3] 2R_16386153_SNP [dm6]	A	C	1.238e^-5	0.883	UPSTREAM Sema-2b DOWNSTREAM CG43187 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	25481418	3R_25481418_SNP [dm3] 3R_29655696_SNP [dm6]	A	G	1.272e^-5	0.883	INTRON Dop1R2
3L	7101366	3L_7101366_SNP [dm3] 3L_7108266_SNP [dm6]	T	A	1.336e^-5	0.883	INTRON form3	TF binding site mE1_TFBS_inv
2L	21342305	2L_21342305_SNP [dm3] 2L_21342305_SNP [dm6]	A	C	1.377e^-5	0.883	DOWNSTREAM dimm INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	16168952	2L_16168952_SNP [dm3] 2L_16168952_SNP [dm6]	T	A	1.479e^-5	0.883	INTRON Ca-alpha1D
3R	12566846	3R_12566846_SNP [dm3] 3R_16741124_SNP [dm6]	T	C	1.484e^-5	0.883	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	1405874	2R_1405874_SNP [dm3] 2R_5518369_SNP [dm6]	T	C	1.563e^-5	0.883	UPSTREAM CG30438 INTRON CG30438	transposable element FlyBase
2R	18901109	2R_18901109_SNP [dm3] 2R_23013586_SNP [dm6]	G	A	1.603e^-5	0.883	INTRON twi & 1 other	TF binding site mE1_TFBS_chinmo
3L	16232541	3L_16232541_SNP [dm3] 3L_16239441_SNP [dm6]	A	T	1.610e^-5	0.883	UTR_3_PRIME l_3_72Dr	TF binding site mE1_TFBS_cad
2L	16500603	2L_16500603_SNP [dm3] 2L_16500603_SNP [dm6]	A	G	1.676e^-5	0.883	INTRON Tpr2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21057413	2L_21057413_SNP [dm3] 2L_21057413_SNP [dm6]	C	A	1.705e^-5	0.883	UTR_3_PRIME Itgbetanu DOWNSTREAM CG9265	transposable element FlyBase
2R	18552045	2R_18552045_SNP [dm3] 2R_22664540_SNP [dm6]	A	C	1.769e^-5	0.883	DOWNSTREAM CG4250 INTERGENIC
3L	22115469	3L_22115469_SNP [dm3] 3L_22122369_SNP [dm6]	G	A	1.879e^-5	0.883	UPSTREAM CR45235 DOWNSTREAM CR45236 INTERGENIC
2R	17575477	2R_17575477_SNP [dm3] 2R_21687972_SNP [dm6]	A	T	1.930e^-5	0.883	UTR_3_PRIME CG30285 UPSTREAM Tbp & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
2R	15120025	2R_15120025_SNP [dm3] 2R_19232520_SNP [dm6]	A	G	1.964e^-5	0.883	INTRON cora	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	14939005	X_14939005_SNP [dm3] X_15044972_SNP [dm6]	G	A	2.076e^-5	0.883	INTRON hiw & 1 other
3R	17841583	3R_17841583_SNP [dm3] 3R_22015861_SNP [dm6]	T	G	2.112e^-5	0.883	SYNONYMOUS_CODING CG6332 DOWNSTREAM CG6439	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3L	7699605	3L_7699605_SNP [dm3] 3L_7706505_SNP [dm6]	C	A	2.131e^-5	0.883	SYNONYMOUS_CODING Ank2 INTRON CG32373
2L	3852158	2L_3852158_SNP [dm3] 2L_3852158_SNP [dm6]	G	A	2.131e^-5	0.883	EXON CR45451	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2R	18552051	2R_18552051_SNP [dm3] 2R_22664546_SNP [dm6]	T	G	2.152e^-5	0.883	DOWNSTREAM CG4250 INTERGENIC
X	9168518	X_9168518_SNP [dm3] X_9274485_SNP [dm6]	T	C	2.261e^-5	0.883	SYNONYMOUS_CODING CG16892 UPSTREAM snoRNA:CG16892-a DOWNSTREAM c11.1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	16665093	3L_16665093_SNP [dm3] 3L_16671993_SNP [dm6]	G	A	2.285e^-5	0.883	UTR_3_PRIME zetaCOP INTRON zetaCOP
2R	12274015	2R_12274015_SNP [dm3] 2R_16386510_SNP [dm6]	A	G	2.312e^-5	0.883	UPSTREAM Sema-2b DOWNSTREAM CG43187 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	20191495	2R_20191495_SNP [dm3] 2R_24303972_SNP [dm6]	T	C	2.407e^-5	0.883	INTERGENIC	regulatory region REDfly_CRMs
2L	19450243	2L_19450243_SNP [dm3] 2L_19450243_SNP [dm6]	C	T	2.464e^-5	0.883	SYNONYMOUS_CODING Top2
X	19786660	X_19786660_INS [dm3] X_19892627_INS [dm6]	T	TCTG	2.468e^-5	0.883	INTRON Hers
X	3819659	X_3819659_SNP [dm3] X_3925626_SNP [dm6]	A	G	2.601e^-5	0.883	INTRON CG42541
2L	21674895	2L_21674895_SNP [dm3] 2L_21674895_SNP [dm6]	C	T	2.640e^-5	0.883	INTRON CG2225	transposable element FlyBase
X	13918407	X_13918407_SNP [dm3] X_14024374_SNP [dm6]	A	G	2.684e^-5	0.883	DOWNSTREAM tRNA:S774:12Ec INTERGENIC
2R	4475942	2R_4475942_SNP [dm3] 2R_8588437_SNP [dm6]	C	T	2.693e^-5	0.883	INTERGENIC
2L	18359189	2L_18359189_SNP [dm3] 2L_18359189_SNP [dm6]	C	T	2.702e^-5	0.883	UPSTREAM Acp36DE INTRON Fas3	TF binding site BDTNP1_TFBS_da
2L	4388947	2L_4388947_SNP [dm3] 2L_4388947_SNP [dm6]	G	A	2.704e^-5	0.883	INTRON Tps1
2L	21677150	2L_21677150_SNP [dm3] 2L_21677150_SNP [dm6]	G	T	2.741e^-5	0.883	UTR_5_PRIME CG2225 UPSTREAM CG2225 DOWNSTREAM EF2 INTRON CG2225	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	14939048	X_14939048_SNP [dm3] X_15045015_SNP [dm6]	A	G	2.867e^-5	0.883	INTRON hiw & 1 other
2R	6634600	2R_6634600_SNP [dm3] 2R_10747095_SNP [dm6]	C	T	2.942e^-5	0.883	INTRON CG33144
3L	16230885	3L_16230885_SNP [dm3] 3L_16237785_SNP [dm6]	C	T	2.994e^-5	0.883	NON_SYNONYMOUS_CODING l_3_72Dr DOWNSTREAM l_3_72Dp
2R	14532977	2R_14532977_SNP [dm3] 2R_18645472_SNP [dm6]	A	C	3.024e^-5	0.883	INTRON SP2637	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	4636932	3L_4636932_INS [dm3] 3L_4636932_INS [dm6]	T	TTT	3.038e^-5	0.883	UTR_3_PRIME axo INTRON axo
2L	2791977	2L_2791977_SNP [dm3] 2L_2791977_SNP [dm6]	A	T	3.091e^-5	0.883	INTRON Syt1
3L	18601521	3L_18601521_SNP [dm3] 3L_18608421_SNP [dm6]	T	C	3.093e^-5	0.883	INTRON CG4174 & 2 others
2R	14423807	2R_14423807_SNP [dm3] 2R_18536302_SNP [dm6]	T	A	3.112e^-5	0.883	UPSTREAM Pepck & 1 other DOWNSTREAM CG10924 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2742587	2L_2742587_SNP [dm3] 2L_2742587_SNP [dm6]	G	A	3.140e^-5	0.883	SYNONYMOUS_CODING Hrs DOWNSTREAM CG9961	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	1028334	3R_1028334_SNP [dm3] 3R_5202612_SNP [dm6]	A	C	3.155e^-5	0.883	INTRON cno
X	14945772	X_14945772_SNP [dm3] X_15051739_SNP [dm6]	A	G	3.224e^-5	0.889	UTR_3_PRIME CG5541 INTRON hiw
2R	20347054	2R_20347054_SNP [dm3] 2R_24459531_SNP [dm6]	A	T	3.293e^-5	0.889	INTRON CG13579
3L	6291176	3L_6291176_SNP [dm3] 3L_6298076_SNP [dm6]	G	A	3.342e^-5	0.889	INTERGENIC	TF binding site mE1_TFBS_cad
2R	19153963	2R_19153963_SNP [dm3] 2R_23266440_SNP [dm6]	G	C	3.395e^-5	0.889	UPSTREAM CG12782 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19117890	3L_19117890_SNP [dm3] 3L_19124790_SNP [dm6]	G	T	3.417e^-5	0.889	INTRON CG14082
X	2670119	X_2670119_DEL [dm3] X_2776086_DEL [dm6]	AGCC	A	3.461e^-5	0.889	INTRON kirre
2R	10709878	2R_10709878_SNP [dm3] 2R_14822373_SNP [dm6]	G	A	3.554e^-5	0.901	INTERGENIC
3L	22749097	3L_22749097_SNP [dm3] 3L_22755997_SNP [dm6]	T	A	3.612e^-5	0.903	INTRON SPoCk
X	15865050	X_15865050_INS [dm3] X_15971017_INS [dm6]	C	CC	3.871e^-5	0.92	INTRON mmd	TF binding site mE1_TFBS_HSA
2L	19394909	2L_19394909_SNP [dm3] 2L_19394909_SNP [dm6]	C	T	3.882e^-5	0.92	SYNONYMOUS_CODING CG31798 INTRON CG17544	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24748946	3R_24748946_SNP [dm3] 3R_28923224_SNP [dm6]	T	C	3.886e^-5	0.92	DOWNSTREAM Doa INTRON CG11828
X	15446998	X_15446998_SNP [dm3] X_15552965_SNP [dm6]	C	T	3.892e^-5	0.92	INTRON Ac13E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2748413	2L_2748413_SNP [dm3] 2L_2748413_SNP [dm6]	C	G	4.037e^-5	0.92	UTR_5_PRIME Pgk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	14944423	X_14944423_SNP [dm3] X_15050390_SNP [dm6]	A	G	4.210e^-5	0.92	INTRON hiw & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	18588006	3R_18588006_SNP [dm3] 3R_22762284_SNP [dm6]	A	C	4.217e^-5	0.92	NON_SYNONYMOUS_CODING CG4723 INTRON Usp12-46 & 1 other
2R	18902506	2R_18902506_SNP [dm3] 2R_23014983_SNP [dm6]	C	T	4.248e^-5	0.92	INTRON twi & 1 other	TF binding site BDTNP1_TFBS_twi
X	14944443	X_14944443_SNP [dm3] X_15050410_SNP [dm6]	C	A	4.266e^-5	0.92	INTRON hiw & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	12561389	3R_12561389_SNP [dm3] 3R_16735667_SNP [dm6]	G	A	4.291e^-5	0.92	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z
2L	16502284	2L_16502284_SNP [dm3] 2L_16502284_SNP [dm6]	A	G	4.313e^-5	0.92	INTRON Tpr2
3L	8467604	3L_8467604_SNP [dm3] 3L_8474504_SNP [dm6]	C	A	4.399e^-5	0.92	SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	17998445	3L_17998445_SNP [dm3] 3L_18005345_SNP [dm6]	T	A	4.526e^-5	0.92	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
X	14937567	X_14937567_SNP [dm3] X_15043534_SNP [dm6]	C	G	4.714e^-5	0.92	UPSTREAM CG5541 INTRON hiw	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	2749206	2L_2749206_SNP [dm3] 2L_2749206_SNP [dm6]	C	A	4.723e^-5	0.92	UPSTREAM Pgk INTRON Pgk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14425225	2R_14425225_SNP [dm3] 2R_18537720_SNP [dm6]	T	A	4.842e^-5	0.92	SYNONYMOUS_CODING Pepck UTR_3_PRIME CG45087	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17873037	2R_17873037_SNP [dm3] 2R_21985532_SNP [dm6]	C	A	4.878e^-5	0.92	DOWNSTREAM CG30401 INTERGENIC
2R	17873059	2R_17873059_SNP [dm3] 2R_21985554_SNP [dm6]	T	C	4.956e^-5	0.92	DOWNSTREAM CG30401 INTERGENIC
2L	6142260	2L_6142260_SNP [dm3] 2L_6142260_SNP [dm6]	G	A	4.977e^-5	0.92	SYNONYMOUS_CODING CG13991	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6634598	2R_6634598_SNP [dm3] 2R_10747093_SNP [dm6]	T	C	5.060e^-5	0.92	INTRON CG33144
X	21511037	X_21511037_SNP [dm3] X_21640010_SNP [dm6]	C	T	5.100e^-5	0.92	INTERGENIC
2R	19104986	2R_19104986_SNP [dm3] 2R_23217463_SNP [dm6]	C	T	5.109e^-5	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9743884	3R_9743884_SNP [dm3] 3R_13918162_SNP [dm6]	T	C	5.122e^-5	0.92	INTERGENIC
X	15446898	X_15446898_SNP [dm3] X_15552865_SNP [dm6]	T	G	5.143e^-5	0.92	INTRON Ac13E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11902993	2R_11902993_SNP [dm3] 2R_16015488_SNP [dm6]	C	T	5.288e^-5	0.92	SYNONYMOUS_CODING Rrp42 UPSTREAM Prosbeta1 DOWNSTREAM CG8397	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3L	8607987	3L_8607987_SNP [dm3] 3L_8614887_SNP [dm6]	G	A	5.299e^-5	0.92	SYNONYMOUS_CODING CG6282
3L	16665054	3L_16665054_SNP [dm3] 3L_16671954_SNP [dm6]	C	A	5.320e^-5	0.92	UTR_3_PRIME zetaCOP INTRON zetaCOP
3L	20553301	3L_20553301_SNP [dm3] 3L_20560201_SNP [dm6]	G	A	5.377e^-5	0.92	INTERGENIC
2R	11578599	2R_11578599_SNP [dm3] 2R_15691094_SNP [dm6]	A	C	5.437e^-5	0.92	UPSTREAM CG30088 DOWNSTREAM CG30090 EXON CR44372
3R	13429031	3R_13429031_SNP [dm3] 3R_17603309_SNP [dm6]	A	T	5.458e^-5	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	933736	2R_933736_SNP [dm3] 2R_5046231_SNP [dm6]	T	C	5.484e^-5	0.92	INTERGENIC	transposable element FlyBase
2L	22158225	2L_22158225_SNP [dm3] 2L_22158225_SNP [dm6]	T	G	5.567e^-5	0.92	INTRON CG42748
3L	9647740	3L_9647740_SNP [dm3] 3L_9654640_SNP [dm6]	G	A	5.613e^-5	0.92	INTRON fry & 1 other
2L	13237450	2L_13237450_SNP [dm3] 2L_13237450_SNP [dm6]	G	A	5.664e^-5	0.92	INTRON CG5867
2L	16500600	2L_16500600_SNP [dm3] 2L_16500600_SNP [dm6]	A	C	5.686e^-5	0.92	INTRON Tpr2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	933738	2R_933738_INS [dm3] 2R_5046233_INS [dm6]	CT	AAACGG	5.690e^-5	0.92	INTERGENIC	transposable element FlyBase
X	11117611	X_11117611_SNP [dm3] X_11223578_SNP [dm6]	T	A	5.712e^-5	0.92	UTR_3_PRIME CG44422 DOWNSTREAM CG44422 INTRON CG44422
2R	17575476	2R_17575476_SNP [dm3] 2R_21687971_SNP [dm6]	T	A	5.719e^-5	0.92	UTR_3_PRIME CG30285 UPSTREAM Tbp & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
X	14945763	X_14945763_SNP [dm3] X_15051730_SNP [dm6]	C	T	5.776e^-5	0.92	UTR_3_PRIME CG5541 INTRON hiw
3L	15248559	3L_15248559_INS [dm3] 3L_15255459_INS [dm6]	G	GTATGGATATG...	5.854e^-5	0.92	INTERGENIC
2R	3905624	2R_3905624_SNP [dm3] 2R_8018119_SNP [dm6]	A	G	5.859e^-5	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	7403435	2R_7403435_SNP [dm3] 2R_11515930_SNP [dm6]	G	A	5.860e^-5	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	5504674	2L_5504674_SNP [dm3] 2L_5504674_SNP [dm6]	C	A	5.869e^-5	0.92	INTERGENIC
2L	2742764	2L_2742764_SNP [dm3] 2L_2742764_SNP [dm6]	T	A	5.888e^-5	0.92	SYNONYMOUS_CODING Hrs DOWNSTREAM CG9961	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23337220	3R_23337220_SNP [dm3] 3R_27511498_SNP [dm6]	C	T	5.910e^-5	0.92	INTERGENIC
2L	21677504	2L_21677504_SNP [dm3] 2L_21677504_SNP [dm6]	A	T	5.932e^-5	0.92	UTR_5_PRIME CG2225 UPSTREAM CG2225 DOWNSTREAM EF2	TF binding site BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA
2L	6903401	2L_6903401_SNP [dm3] 2L_6903401_SNP [dm6]	T	C	6.088e^-5	0.926	INTRON Nlg2
X	19608162	X_19608162_SNP [dm3] X_19714129_SNP [dm6]	A	G	6.091e^-5	0.926	DOWNSTREAM CR44889 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	3819064	X_3819064_SNP [dm3] X_3925031_SNP [dm6]	C	T	6.148e^-5	0.926	INTRON CG42541
3R	21018280	3R_21018280_SNP [dm3] 3R_25192558_SNP [dm6]	A	T	6.176e^-5	0.926	UTR_3_PRIME dan INTRON lobo
3L	19117886	3L_19117886_SNP [dm3] 3L_19124786_SNP [dm6]	A	C	6.274e^-5	0.926	INTRON CG14082
2L	2743731	2L_2743731_SNP [dm3] 2L_2743731_SNP [dm6]	A	G	6.311e^-5	0.926	SYNONYMOUS_CODING CG9961 UTR_3_PRIME CG9961 DOWNSTREAM Hrs
3R	15135377	3R_15135377_SNP [dm3] 3R_19309655_SNP [dm6]	C	G	6.322e^-5	0.926	INTRON Dl
2R	20214732	2R_20214732_SNP [dm3] 2R_24327209_SNP [dm6]	T	G	6.494e^-5	0.926	INTRON CR44810
2R	12273696	2R_12273696_SNP [dm3] 2R_16386191_SNP [dm6]	G	T	6.510e^-5	0.926	UPSTREAM Sema-2b DOWNSTREAM CG43187 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	20347069	2R_20347069_SNP [dm3] 2R_24459546_SNP [dm6]	G	C	6.518e^-5	0.926	INTRON CG13579
2R	4411554	2R_4411554_SNP [dm3] 2R_8524049_SNP [dm6]	C	G	6.519e^-5	0.926	INTRON mtt
X	14937346	X_14937346_SNP [dm3] X_15043313_SNP [dm6]	T	A	6.661e^-5	0.926	UPSTREAM CG5541 INTRON hiw	TF binding site mE1_TFBS_Trl
2L	16097510	2L_16097510_SNP [dm3] 2L_16097510_SNP [dm6]	C	T	6.666e^-5	0.926	INTERGENIC
X	16068478	X_16068478_SNP [dm3] X_16174445_SNP [dm6]	C	T	6.678e^-5	0.926	INTERGENIC
X	5903391	X_5903391_SNP [dm3] X_6009358_SNP [dm6]	G	A	6.859e^-5	0.926	INTRON mab-21
2R	18552052	2R_18552052_SNP [dm3] 2R_22664547_SNP [dm6]	T	C	6.886e^-5	0.926	DOWNSTREAM CG4250 INTERGENIC
3L	6754351	3L_6754351_SNP [dm3] 3L_6761251_SNP [dm6]	C	T	7.069e^-5	0.926	UPSTREAM CG32392 INTRON CG32392
3R	25182085	3R_25182085_SNP [dm3] 3R_29356363_SNP [dm6]	G	A	7.081e^-5	0.926	EXON CR45547
2L	4389024	2L_4389024_SNP [dm3] 2L_4389024_SNP [dm6]	T	G	7.302e^-5	0.926	INTRON Tps1
2R	12273711	2R_12273711_DEL [dm3] 2R_16386206_DEL [dm6]	TAT	T	7.369e^-5	0.926	UPSTREAM Sema-2b DOWNSTREAM CG43187 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	18322089	3L_18322089_INS [dm3] 3L_18328989_INS [dm6]	C	CC	7.395e^-5	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	19786650	X_19786650_MNP [dm3] X_19892617_MNP [dm6]	AAA	GTT	7.501e^-5	0.926	INTRON Hers
3R	3333005	3R_3333005_SNP [dm3] 3R_7507283_SNP [dm6]	T	A	7.556e^-5	0.926	INTERGENIC
3L	11087205	3L_11087205_SNP [dm3] 3L_11094105_SNP [dm6]	T	C	7.605e^-5	0.926	SYNONYMOUS_CODING CG6279 UPSTREAM JIL-1	TF binding site mE1_TFBS_chinmo
2R	18719193	2R_18719193_SNP [dm3] 2R_22831670_SNP [dm6]	G	A	7.611e^-5	0.926	NON_SYNONYMOUS_CODING CG30272 UPSTREAM CG30265
2L	21056844	2L_21056844_SNP [dm3] 2L_21056844_SNP [dm6]	A	G	7.649e^-5	0.926	NON_SYNONYMOUS_CODING Itgbetanu DOWNSTREAM CG9265	TF binding site mE1_TFBS_sens
3R	22270844	3R_22270844_SNP [dm3] 3R_26445122_SNP [dm6]	A	G	7.736e^-5	0.926	INTRON tx
2R	14423903	2R_14423903_SNP [dm3] 2R_18536398_SNP [dm6]	C	T	7.825e^-5	0.926	UPSTREAM Pepck & 1 other DOWNSTREAM CG10924 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	13819331	2L_13819331_SNP [dm3] 2L_13819331_SNP [dm6]	G	A	7.898e^-5	0.926	INTRON Sos	TF binding site mE1_TFBS_cad
2L	21326772	2L_21326772_SNP [dm3] 2L_21326772_SNP [dm6]	T	C	7.914e^-5	0.926	EXON CR42696
2R	9369908	2R_9369908_SNP [dm3] 2R_13482403_SNP [dm6]	T	A	7.971e^-5	0.926	INTRON arr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	16222457	2L_16222457_SNP [dm3] 2L_16222457_SNP [dm6]	A	G	8.111e^-5	0.926	INTERGENIC
2R	19153328	2R_19153328_SNP [dm3] 2R_23265805_SNP [dm6]	T	G	8.164e^-5	0.926	UPSTREAM CG12782 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	20942131	2L_20942131_SNP [dm3] 2L_20942131_SNP [dm6]	G	A	8.174e^-5	0.926	INTERGENIC
2L	6351603	2L_6351603_SNP [dm3] 2L_6351603_SNP [dm6]	T	C	8.180e^-5	0.926	UPSTREAM CG9498 DOWNSTREAM ppk7 INTERGENIC	TF binding site mE1_TFBS_cnc
3L	2644304	3L_2644304_SNP [dm3] 3L_2644304_SNP [dm6]	T	C	8.181e^-5	0.926	UPSTREAM CG14949 INTERGENIC
3L	3181781	3L_3181781_SNP [dm3] 3L_3181781_SNP [dm6]	C	T	8.212e^-5	0.926	NON_SYNONYMOUS_CODING Girdin
X	16558748	X_16558748_SNP [dm3] X_16664715_SNP [dm6]	C	T	8.217e^-5	0.926	UPSTREAM CG15865 INTRON r
2L	6532596	2L_6532596_SNP [dm3] 2L_6532596_SNP [dm6]	C	G	8.223e^-5	0.926	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15446858	X_15446858_SNP [dm3] X_15552825_SNP [dm6]	C	G	8.245e^-5	0.926	INTRON Ac13E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12553240	3R_12553240_SNP [dm3] 3R_16727518_SNP [dm6]	T	C	8.310e^-5	0.926	INTRON Ubx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	15102861	2R_15102861_SNP [dm3] 2R_19215356_SNP [dm6]	T	G	8.349e^-5	0.926	INTRON hppy
2L	3131591	2L_3131591_SNP [dm3] 2L_3131591_SNP [dm6]	T	C	8.349e^-5	0.926	INTRON toc
2L	16187088	2L_16187088_SNP [dm3] 2L_16187088_SNP [dm6]	T	A	8.415e^-5	0.926	INTRON Ca-alpha1D	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	11454455	2L_11454455_SNP [dm3] 2L_11454455_SNP [dm6]	C	T	8.487e^-5	0.926	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
3L	13621338	3L_13621338_SNP [dm3] 3L_13628238_SNP [dm6]	G	A	8.513e^-5	0.926	INTRON bru-3
X	11117762	X_11117762_SNP [dm3] X_11223729_SNP [dm6]	A	G	8.559e^-5	0.926	UTR_3_PRIME CG44422 DOWNSTREAM CG44422 INTRON CG44422
2R	4914721	2R_4914721_SNP [dm3] 2R_9027216_SNP [dm6]	A	C	8.629e^-5	0.926	INTRON CG8170
2L	21056907	2L_21056907_SNP [dm3] 2L_21056907_SNP [dm6]	T	C	8.708e^-5	0.926	NON_SYNONYMOUS_CODING Itgbetanu DOWNSTREAM CG9265	TF binding site mE1_TFBS_sens
2L	21674912	2L_21674912_SNP [dm3] 2L_21674912_SNP [dm6]	C	A	8.710e^-5	0.926	INTRON CG2225	transposable element FlyBase
2L	2740559	2L_2740559_SNP [dm3] 2L_2740559_SNP [dm6]	C	T	8.726e^-5	0.926	SYNONYMOUS_CODING Hrs UPSTREAM Hrs DOWNSTREAM CG31689	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14570739	2L_14570739_SNP [dm3] 2L_14570739_SNP [dm6]	A	G	8.730e^-5	0.926	INTERGENIC	TF binding site mE1_TFBS_cad
X	15865063	X_15865063_SNP [dm3] X_15971030_SNP [dm6]	T	C	8.912e^-5	0.926	INTRON mmd	TF binding site mE1_TFBS_HSA
X	16818228	X_16818228_SNP [dm3] X_16924195_SNP [dm6]	T	A	8.915e^-5	0.926	UPSTREAM CG4928 INTRON CG4928
2L	6319848	2L_6319848_SNP [dm3] 2L_6319848_SNP [dm6]	A	T	8.937e^-5	0.926	INTRON Ddr
3L	13684609	3L_13684609_SNP [dm3] 3L_13691509_SNP [dm6]	T	C	8.955e^-5	0.926	INTRON bru-3
2R	12033905	2R_12033905_SNP [dm3] 2R_16146400_SNP [dm6]	A	G	9.002e^-5	0.926	SYNONYMOUS_CODING Ext2 DOWNSTREAM Aats-cys
2R	9959206	2R_9959206_SNP [dm3] 2R_14071701_SNP [dm6]	C	T	9.002e^-5	0.926	INTRON Prosap
2L	7018298	2L_7018298_SNP [dm3] 2L_7018298_SNP [dm6]	T	C	9.007e^-5	0.926	SYNONYMOUS_CODING ade3	TF binding site mE1_TFBS_chinmo
3R	20369964	3R_20369964_SNP [dm3] 3R_24544242_SNP [dm6]	T	A	9.132e^-5	0.926	UPSTREAM CG5789 & 1 other INTERGENIC
X	14945908	X_14945908_SNP [dm3] X_15051875_SNP [dm6]	T	C	9.210e^-5	0.926	SYNONYMOUS_CODING hiw DOWNSTREAM CG5541
3L	4636935	3L_4636935_SNP [dm3] 3L_4636935_SNP [dm6]	C	G	9.224e^-5	0.926	UTR_3_PRIME axo INTRON axo
X	15446742	X_15446742_SNP [dm3] X_15552709_SNP [dm6]	A	G	9.332e^-5	0.926	INTRON Ac13E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	16168472	2L_16168472_SNP [dm3] 2L_16168472_SNP [dm6]	G	A	9.353e^-5	0.926	SPLICE_SITE_DONOR Ca-alpha1D UTR_5_PRIME Ca-alpha1D INTRON Ca-alpha1D
3R	24124706	3R_24124706_SNP [dm3] 3R_28298984_SNP [dm6]	A	G	9.404e^-5	0.926	INTERGENIC
2L	4369503	2L_4369503_INS [dm3] 2L_4369503_INS [dm6]	C	CCCTC	9.605e^-5	0.926	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3R	23328277	3R_23328277_SNP [dm3] 3R_27502555_SNP [dm6]	G	A	9.618e^-5	0.926	UPSTREAM CG43139 INTRON CG5402
2L	2748539	2L_2748539_SNP [dm3] 2L_2748539_SNP [dm6]	C	G	9.659e^-5	0.926	UTR_5_PRIME Pgk UPSTREAM Pgk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	24748919	3R_24748919_SNP [dm3] 3R_28923197_SNP [dm6]	G	A	9.706e^-5	0.926	SYNONYMOUS_CODING CG11828 DOWNSTREAM Doa
2L	10671528	2L_10671528_SNP [dm3] 2L_10671528_SNP [dm6]	A	T	9.847e^-5	0.926	DOWNSTREAM CG31871 INTERGENIC
X	19786657	X_19786657_SNP [dm3] X_19892624_SNP [dm6]	T	C	9.859e^-5	0.926	INTRON Hers
X	9168221	X_9168221_SNP [dm3] X_9274188_SNP [dm6]	G	T	9.946e^-5	0.926	SYNONYMOUS_CODING CG16892 UPSTREAM snoRNA:CG16892-a	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	4964413	3R_4964413_SNP [dm3] 3R_9138691_SNP [dm6]	T	A	9.964e^-5	0.926	INTRON pum
2R	3922007	2R_3922007_SNP [dm3] 2R_8034502_SNP [dm6]	C	T	1.006e^-4	0.926	SYNONYMOUS_CODING Optix
3R	24748963	3R_24748963_SNP [dm3] 3R_28923241_SNP [dm6]	A	C	1.006e^-4	0.926	DOWNSTREAM Doa INTRON CG11828
3R	25605188	3R_25605188_SNP [dm3] 3R_29779466_SNP [dm6]	C	T	1.008e^-4	0.926	SYNONYMOUS_CODING fig INTRON kay	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	15445290	X_15445290_SNP [dm3] X_15551257_SNP [dm6]	A	G	1.009e^-4	0.926	INTRON Ac13E	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	16252354	3L_16252354_SNP [dm3] 3L_16259254_SNP [dm6]	C	A	1.009e^-4	0.926	NON_SYNONYMOUS_CODING CG13053
2R	19086169	2R_19086169_SNP [dm3] 2R_23198646_SNP [dm6]	C	A	1.010e^-4	0.926	INTRON CG34371	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11444865	3L_11444865_SNP [dm3] 3L_11451765_SNP [dm6]	A	G	1.011e^-4	0.926	INTERGENIC
X	6322108	X_6322108_SNP [dm3] X_6428075_SNP [dm6]	G	T	1.011e^-4	0.926	INTRON CG42340
X	14622949	X_14622949_SNP [dm3] X_14728916_SNP [dm6]	T	G	1.015e^-4	0.926	INTRON NetB
2R	3908618	2R_3908618_DEL [dm3] 2R_8021113_DEL [dm6]	AGTTGGACCCAGTTCCCA...	A	1.027e^-4	0.926	EXON CR45267	TF binding site mE1_TFBS_cad
X	14946085	X_14946085_SNP [dm3] X_15052052_SNP [dm6]	A	C	1.029e^-4	0.926	SPLICE_SITE_REGION hiw DOWNSTREAM CG5541 INTRON hiw
X	14944885	X_14944885_SNP [dm3] X_15050852_SNP [dm6]	C	G	1.037e^-4	0.926	NON_SYNONYMOUS_CODING CG5541 INTRON hiw	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18517368	2L_18517368_DEL [dm3] 2L_18517368_DEL [dm6]	CC	C	1.041e^-4	0.926	UPSTREAM CG10211 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	13248647	2L_13248647_DEL [dm3] 2L_13248647_DEL [dm6]	TGCATTTTAGGTATTTATTT...	T	1.050e^-4	0.926	INTRON CG16820
3R	25322032	3R_25322032_SNP [dm3] 3R_29496310_SNP [dm6]	A	G	1.085e^-4	0.926	UPSTREAM CG2010 INTRON CG2010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	19608172	X_19608172_SNP [dm3] X_19714139_SNP [dm6]	T	G	1.088e^-4	0.926	DOWNSTREAM CR44889 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	20347044	2R_20347044_SNP [dm3] 2R_24459521_SNP [dm6]	T	G	1.090e^-4	0.926	INTRON CG13579
2L	17812787	2L_17812787_SNP [dm3] 2L_17812787_SNP [dm6]	C	T	1.099e^-4	0.926	UPSTREAM CG42830 INTRON CadN2
2R	17616474	2R_17616474_SNP [dm3] 2R_21728969_SNP [dm6]	A	G	1.099e^-4	0.926	UPSTREAM CR44750 INTERGENIC	TF binding site mE1_TFBS_cad
3L	20554424	3L_20554424_SNP [dm3] 3L_20561324_SNP [dm6]	A	C	1.100e^-4	0.926	INTERGENIC
3R	19135796	3R_19135796_DEL [dm3] 3R_23310074_DEL [dm6]	GGTGGCTTATCCG...	G	1.100e^-4	0.926	INTRON pnt	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	14071987	X_14071987_SNP [dm3] X_14177954_SNP [dm6]	C	T	1.100e^-4	0.926	UTR_3_PRIME CG11581
2L	22356981	2L_22356981_SNP [dm3] 2L_22356981_SNP [dm6]	C	A	1.101e^-4	0.926	UTR_5_PRIME CG17018 INTRON CG17018
2L	2729064	2L_2729064_SNP [dm3] 2L_2729064_SNP [dm6]	C	T	1.105e^-4	0.926	INTRON CG31689
X	15865052	X_15865052_SNP [dm3] X_15971019_SNP [dm6]	C	A	1.108e^-4	0.926	INTRON mmd	TF binding site mE1_TFBS_HSA
2L	10825996	2L_10825996_SNP [dm3] 2L_10825996_SNP [dm6]	G	C	1.111e^-4	0.926	SYNONYMOUS_CODING Nos
X	6563428	X_6563428_SNP [dm3] X_6669395_SNP [dm6]	G	A	1.111e^-4	0.926	UTR_3_PRIME CG3198	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	9168413	X_9168413_SNP [dm3] X_9274380_SNP [dm6]	A	C	1.117e^-4	0.926	SYNONYMOUS_CODING CG16892 UPSTREAM snoRNA:CG16892-a DOWNSTREAM c11.1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18842923	2R_18842923_SNP [dm3] 2R_22955400_SNP [dm6]	C	T	1.122e^-4	0.926	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	2742602	2L_2742602_SNP [dm3] 2L_2742602_SNP [dm6]	C	T	1.122e^-4	0.926	SYNONYMOUS_CODING Hrs DOWNSTREAM CG9961	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5800934	3L_5800934_SNP [dm3] 3L_5807834_SNP [dm6]	G	A	1.123e^-4	0.926	INTRON S6k	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2118136	3L_2118136_INS [dm3] 3L_2118136_INS [dm6]	C	CCCCAAGAGCAG...	1.129e^-4	0.926	INTRON zormin
2R	17787905	2R_17787905_SNP [dm3] 2R_21900400_SNP [dm6]	C	T	1.131e^-4	0.926	INTRON Fili	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11867120	X_11867120_SNP [dm3] X_11973087_SNP [dm6]	A	G	1.138e^-4	0.926	INTRON cac
X	11117674	X_11117674_DEL [dm3] X_11223641_DEL [dm6]	AA	A	1.153e^-4	0.926	UTR_3_PRIME CG44422 DOWNSTREAM CG44422 INTRON CG44422
2L	2763227	2L_2763227_SNP [dm3] 2L_2763227_SNP [dm6]	A	C	1.160e^-4	0.926	UTR_3_PRIME Trn-SR DOWNSTREAM CG3077
3R	1027477	3R_1027477_SNP [dm3] 3R_5201755_SNP [dm6]	G	A	1.160e^-4	0.926	INTRON cno
2R	18839017	2R_18839017_SNP [dm3] 2R_22951494_SNP [dm6]	C	T	1.161e^-4	0.926	DOWNSTREAM CR32835 EXON CR32835
2L	3410557	2L_3410557_SNP [dm3] 2L_3410557_SNP [dm6]	T	G	1.169e^-4	0.926	UPSTREAM CG8840 INTRON pgant2
2R	8413154	2R_8413154_SNP [dm3] 2R_12525649_SNP [dm6]	C	G	1.170e^-4	0.926	INTERGENIC
2L	2746335	2L_2746335_SNP [dm3] 2L_2746335_SNP [dm6]	A	C	1.172e^-4	0.926	NON_SYNONYMOUS_CODING Cwc25 DOWNSTREAM Pgk	TF binding site mE1_TFBS_sens
3R	13449086	3R_13449086_SNP [dm3] 3R_17623364_SNP [dm6]	G	A	1.175e^-4	0.926	DOWNSTREAM tRNA:CR33534 INTERGENIC	TF binding site BDTNP1_TFBS_hb
3L	10508664	3L_10508664_SNP [dm3] 3L_10515564_SNP [dm6]	A	T	1.176e^-4	0.926	UPSTREAM A2bp1 INTRON A2bp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14937577	X_14937577_SNP [dm3] X_15043544_SNP [dm6]	T	C	1.178e^-4	0.926	UPSTREAM CG5541 INTRON hiw	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	26081322	3R_26081322_SNP [dm3] 3R_30255600_SNP [dm6]	A	C	1.180e^-4	0.926	INTERGENIC
2R	20148387	2R_20148387_SNP [dm3] 2R_24260864_SNP [dm6]	G	C	1.201e^-4	0.93	UPSTREAM CG3376 INTRON CG3376	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14937545	X_14937545_SNP [dm3] X_15043512_SNP [dm6]	C	A	1.217e^-4	0.93	UPSTREAM CG5541 INTRON hiw	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	12061972	2L_12061972_SNP [dm3] 2L_12061972_SNP [dm6]	C	T	1.224e^-4	0.93	SYNONYMOUS_CODING Rab3-GAP	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	7244204	X_7244204_SNP [dm3] X_7350171_SNP [dm6]	T	C	1.233e^-4	0.93	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	1015170	2R_1015170_DEL [dm3] 2R_5127665_DEL [dm6]	TA	T	1.258e^-4	0.93	UPSTREAM CR43256 INTRON gus & 1 other	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
2L	2744752	2L_2744752_SNP [dm3] 2L_2744752_SNP [dm6]	G	C	1.263e^-4	0.93	UPSTREAM Cwc25 INTRON CG9961	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
2R	14165837	2R_14165837_DEL [dm3] 2R_18278332_DEL [dm6]	CGCCC	C	1.272e^-4	0.93	UTR_3_PRIME pen-2 & 1 other DOWNSTREAM sbb & 1 other
3R	25574619	3R_25574619_SNP [dm3] 3R_29748897_SNP [dm6]	C	T	1.279e^-4	0.93	UTR_5_PRIME ATPsyn-gamma UPSTREAM yata & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	20254205	2L_20254205_SNP [dm3] 2L_20254205_SNP [dm6]	C	A	1.283e^-4	0.93	EXON CR40465
2L	5403099	2L_5403099_SNP [dm3] 2L_5403099_SNP [dm6]	A	T	1.286e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	5403108	2L_5403108_SNP [dm3] 2L_5403108_SNP [dm6]	C	A	1.286e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
X	14940548	X_14940548_SNP [dm3] X_15046515_SNP [dm6]	G	A	1.288e^-4	0.93	INTRON hiw & 1 other
2R	20408522	2R_20408522_SNP [dm3] 2R_24520999_SNP [dm6]	A	T	1.313e^-4	0.93	NON_SYNONYMOUS_CODING Ir60d UPSTREAM Ir60f DOWNSTREAM CG4612	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	3821664	X_3821664_SNP [dm3] X_3927631_SNP [dm6]	G	C	1.315e^-4	0.93	INTRON CG42541
X	15446686	X_15446686_MNP [dm3] X_15552653_MNP [dm6]	TCA	ATG	1.315e^-4	0.93	INTRON Ac13E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	14927943	X_14927943_SNP [dm3] X_15033910_SNP [dm6]	T	C	1.316e^-4	0.93	SYNONYMOUS_CODING be UTR_3_PRIME be INTRON hiw
3L	18548447	3L_18548447_SNP [dm3] 3L_18555347_SNP [dm6]	A	T	1.327e^-4	0.93	INTERGENIC
3R	12567535	3R_12567535_SNP [dm3] 3R_16741813_SNP [dm6]	C	T	1.341e^-4	0.93	DOWNSTREAM bxd INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3L	5466894	3L_5466894_SNP [dm3] 3L_5473794_SNP [dm6]	A	T	1.345e^-4	0.93	INTERGENIC
2R	4924038	2R_4924038_SNP [dm3] 2R_9036533_SNP [dm6]	T	C	1.347e^-4	0.93	INTERGENIC	TF binding site mE1_TFBS_cad
3L	5445604	3L_5445604_SNP [dm3] 3L_5452504_SNP [dm6]	C	G	1.348e^-4	0.93	INTERGENIC
3R	14681378	3R_14681378_INS [dm3] 3R_18855656_INS [dm6]	A	ATATAA	1.349e^-4	0.93	INTERGENIC
X	5903359	X_5903359_SNP [dm3] X_6009326_SNP [dm6]	C	A	1.355e^-4	0.93	INTRON mab-21
3R	5220638	3R_5220638_SNP [dm3] 3R_9394916_SNP [dm6]	A	G	1.357e^-4	0.93	UPSTREAM FER INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	7180872	3L_7180872_SNP [dm3] 3L_7187772_SNP [dm6]	T	G	1.368e^-4	0.93	INTRON Dscam2
2L	13918966	2L_13918966_SNP [dm3] 2L_13918966_SNP [dm6]	C	T	1.383e^-4	0.93	INTRON Ance-3
3R	13429348	3R_13429348_SNP [dm3] 3R_17603626_SNP [dm6]	T	A	1.384e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5220565	3R_5220565_SNP [dm3] 3R_9394843_SNP [dm6]	G	T	1.389e^-4	0.93	UPSTREAM FER INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	18505581	2R_18505581_SNP [dm3] 2R_22618076_SNP [dm6]	A	C	1.391e^-4	0.93	INTRON CG33143
2R	3615307	2R_3615307_DEL [dm3] 2R_7727802_DEL [dm6]	GCAAG	G	1.391e^-4	0.93	UPSTREAM CG18812 INTRON CG18812	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14217834	2L_14217834_SNP [dm3] 2L_14217834_SNP [dm6]	A	T	1.397e^-4	0.93	INTRON Dyrk2
3L	11444591	3L_11444591_INS [dm3] 3L_11451491_INS [dm6]	A	AA	1.399e^-4	0.93	INTERGENIC
2R	18842918	2R_18842918_SNP [dm3] 2R_22955395_SNP [dm6]	A	T	1.401e^-4	0.93	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	14390400	X_14390400_SNP [dm3] X_14496367_SNP [dm6]	T	C	1.418e^-4	0.93	INTRON CG12540
X	16920394	X_16920394_SNP [dm3] X_17026361_SNP [dm6]	A	G	1.420e^-4	0.93	INTRON CG45002
X	14939522	X_14939522_SNP [dm3] X_15045489_SNP [dm6]	T	A	1.421e^-4	0.93	INTRON hiw & 1 other
2L	16500573	2L_16500573_SNP [dm3] 2L_16500573_SNP [dm6]	A	G	1.429e^-4	0.93	INTRON Tpr2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16500599	2L_16500599_SNP [dm3] 2L_16500599_SNP [dm6]	G	T	1.432e^-4	0.93	INTRON Tpr2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13945335	3R_13945335_SNP [dm3] 3R_18119613_SNP [dm6]	T	A	1.434e^-4	0.93	INTRON sr
2R	14967462	2R_14967462_SNP [dm3] 2R_19079957_SNP [dm6]	C	G	1.455e^-4	0.93	INTRON 5-HT1A
X	14940332	X_14940332_SNP [dm3] X_15046299_SNP [dm6]	C	T	1.458e^-4	0.93	INTRON hiw & 1 other
2R	2445086	2R_2445086_SNP [dm3] 2R_6557581_SNP [dm6]	T	A	1.461e^-4	0.93	INTRON jing
3R	23002999	3R_23002999_SNP [dm3] 3R_27177277_SNP [dm6]	G	A	1.464e^-4	0.93	SYNONYMOUS_CODING Ser	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9512967	2R_9512967_SNP [dm3] 2R_13625462_SNP [dm6]	T	C	1.475e^-4	0.93	INTRON fas
3R	18488990	3R_18488990_SNP [dm3] 3R_22663268_SNP [dm6]	T	G	1.481e^-4	0.93	INTRON CG45058
3R	19512111	3R_19512111_SNP [dm3] 3R_23686389_SNP [dm6]	A	T	1.482e^-4	0.93	UTR_3_PRIME CG18754 DOWNSTREAM CG18754 INTRON SPE
3L	6978456	3L_6978456_INS [dm3] 3L_6985356_INS [dm6]	T	TC	1.492e^-4	0.93	UPSTREAM CG32388 & 1 other INTERGENIC
X	12779438	X_12779438_SNP [dm3] X_12885405_SNP [dm6]	G	A	1.497e^-4	0.93	INTRON Pde9
3R	26100336	3R_26100336_SNP [dm3] 3R_30274614_SNP [dm6]	C	T	1.497e^-4	0.93	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	2644177	3L_2644177_SNP [dm3] 3L_2644177_SNP [dm6]	T	C	1.503e^-4	0.93	UPSTREAM CG14949 INTERGENIC
3R	12553260	3R_12553260_SNP [dm3] 3R_16727538_SNP [dm6]	A	G	1.506e^-4	0.93	INTRON Ubx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	12977324	2L_12977324_SNP [dm3] 2L_12977324_SNP [dm6]	T	C	1.510e^-4	0.93	SYNONYMOUS_CODING Vha68-2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13811710	2R_13811710_SNP [dm3] 2R_17924205_SNP [dm6]	C	G	1.512e^-4	0.93	SYNONYMOUS_CODING Elk
3R	18488976	3R_18488976_SNP [dm3] 3R_22663254_SNP [dm6]	A	C	1.522e^-4	0.93	INTRON CG45058
2L	15339825	2L_15339825_SNP [dm3] 2L_15339825_SNP [dm6]	T	G	1.527e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	16501055	3L_16501055_SNP [dm3] 3L_16507955_SNP [dm6]	T	C	1.530e^-4	0.93	SYNONYMOUS_CODING CG43373
3L	18026837	3L_18026837_SNP [dm3] 3L_18033737_SNP [dm6]	G	C	1.532e^-4	0.93	INTRON Eip75B
2L	3797314	2L_3797314_SNP [dm3] 2L_3797314_SNP [dm6]	T	C	1.541e^-4	0.93	SYNONYMOUS_CODING CG3921
X	12881408	X_12881408_SNP [dm3] X_12987375_SNP [dm6]	C	G	1.546e^-4	0.93	INTERGENIC
2R	6858233	2R_6858233_SNP [dm3] 2R_10970728_SNP [dm6]	T	C	1.567e^-4	0.93	INTERGENIC
2L	8739155	2L_8739155_SNP [dm3] 2L_8739155_SNP [dm6]	C	A	1.576e^-4	0.93	INTRON raw
2R	19153875	2R_19153875_SNP [dm3] 2R_23266352_SNP [dm6]	T	A	1.577e^-4	0.93	UPSTREAM CG12782 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	13221088	2L_13221088_SNP [dm3] 2L_13221088_SNP [dm6]	C	T	1.579e^-4	0.93	SYNONYMOUS_CODING CG5705 DOWNSTREAM Ski6	TF binding site mE1_TFBS_sens
2R	19153188	2R_19153188_SNP [dm3] 2R_23265665_SNP [dm6]	G	A	1.580e^-4	0.93	UPSTREAM CG12782 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17616477	2R_17616477_SNP [dm3] 2R_21728972_SNP [dm6]	G	A	1.581e^-4	0.93	UPSTREAM CR44750 INTERGENIC	TF binding site mE1_TFBS_cad
X	11867130	X_11867130_SNP [dm3] X_11973097_SNP [dm6]	G	C	1.582e^-4	0.93	INTRON cac
2L	2740679	2L_2740679_SNP [dm3] 2L_2740679_SNP [dm6]	T	C	1.586e^-4	0.93	SYNONYMOUS_CODING Hrs UPSTREAM Hrs DOWNSTREAM CG31689	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5403133	2L_5403133_SNP [dm3] 2L_5403133_SNP [dm6]	A	G	1.590e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	22270866	3R_22270866_SNP [dm3] 3R_26445144_SNP [dm6]	C	A	1.592e^-4	0.93	INTRON tx
2R	4431531	2R_4431531_SNP [dm3] 2R_8544026_SNP [dm6]	G	T	1.594e^-4	0.93	UPSTREAM CR44279 INTERGENIC
2L	2742974	2L_2742974_SNP [dm3] 2L_2742974_SNP [dm6]	C	T	1.595e^-4	0.93	SYNONYMOUS_CODING Hrs DOWNSTREAM CG9961	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6088315	2L_6088315_SNP [dm3] 2L_6088315_SNP [dm6]	C	A	1.602e^-4	0.93	INTRON Kr-h1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Trl
X	3818502	X_3818502_SNP [dm3] X_3924469_SNP [dm6]	A	G	1.603e^-4	0.93	INTRON CG42541
3L	22766936	3L_22766936_SNP [dm3] 3L_22773836_SNP [dm6]	T	C	1.605e^-4	0.93	UPSTREAM SPoCk INTRON SPoCk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	21003509	2L_21003509_SNP [dm3] 2L_21003509_SNP [dm6]	G	A	1.606e^-4	0.93	INTRON CG42238	TF binding site mE1_TFBS_inv
2R	17334565	2R_17334565_SNP [dm3] 2R_21447060_SNP [dm6]	T	A	1.623e^-4	0.93	INTRON Sdc
2L	2742299	2L_2742299_SNP [dm3] 2L_2742299_SNP [dm6]	A	C	1.624e^-4	0.93	SYNONYMOUS_CODING Hrs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4478360	X_4478360_SNP [dm3] X_4584327_SNP [dm6]	A	T	1.627e^-4	0.93	INTRON CR32773	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	15446692	X_15446692_SNP [dm3] X_15552659_SNP [dm6]	T	C	1.636e^-4	0.93	INTRON Ac13E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	18998179	3L_18998179_SNP [dm3] 3L_19005079_SNP [dm6]	G	A	1.646e^-4	0.93	SYNONYMOUS_CODING nkd UTR_3_PRIME nkd	TF binding site mE1_TFBS_chinmo
3L	10894836	3L_10894836_SNP [dm3] 3L_10901736_SNP [dm6]	A	T	1.648e^-4	0.93	INTERGENIC
X	1964113	X_1964113_SNP [dm3] X_2070080_SNP [dm6]	C	T	1.658e^-4	0.93	DOWNSTREAM CG4194 INTRON CG4199	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1937599	3L_1937599_SNP [dm3] 3L_1937599_SNP [dm6]	T	G	1.660e^-4	0.93	INTRON CG5687
3R	25574896	3R_25574896_SNP [dm3] 3R_29749174_SNP [dm6]	T	G	1.690e^-4	0.93	UPSTREAM yata & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	520356	2L_520356_SNP [dm3] 2L_520356_SNP [dm6]	G	A	1.702e^-4	0.93	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3L	16669810	3L_16669810_SNP [dm3] 3L_16676710_SNP [dm6]	T	G	1.713e^-4	0.93	UTR_3_PRIME Lasp DOWNSTREAM CG13032 & 2 others
3L	19034279	3L_19034279_SNP [dm3] 3L_19041179_SNP [dm6]	C	T	1.715e^-4	0.93	INTRON nkd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	2734818	2L_2734818_SNP [dm3] 2L_2734818_SNP [dm6]	C	G	1.716e^-4	0.93	UPSTREAM CG31689 INTRON CG31689
2R	7403428	2R_7403428_SNP [dm3] 2R_11515923_SNP [dm6]	G	A	1.723e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	971441	3R_971441_SNP [dm3] 3R_5145719_SNP [dm6]	C	T	1.735e^-4	0.93	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	12273943	2R_12273943_SNP [dm3] 2R_16386438_SNP [dm6]	T	G	1.736e^-4	0.93	UPSTREAM Sema-2b DOWNSTREAM CG43187 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	9643113	3L_9643113_SNP [dm3] 3L_9650013_SNP [dm6]	A	T	1.742e^-4	0.93	INTRON fry & 1 other
2R	14981648	2R_14981648_SNP [dm3] 2R_19094143_SNP [dm6]	C	T	1.743e^-4	0.93	SYNONYMOUS_CODING 5-HT1A DOWNSTREAM Ir56a	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	10309051	3L_10309051_SNP [dm3] 3L_10315951_SNP [dm6]	C	A	1.746e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	2741555	2L_2741555_SNP [dm3] 2L_2741555_SNP [dm6]	C	T	1.750e^-4	0.93	INTRON Hrs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16507211	X_16507211_SNP [dm3] X_16613178_SNP [dm6]	C	G	1.753e^-4	0.93	INTRON mbt
2L	18431678	2L_18431678_SNP [dm3] 2L_18431678_SNP [dm6]	C	A	1.753e^-4	0.93	INTERGENIC
3R	21847294	3R_21847294_SNP [dm3] 3R_26021572_SNP [dm6]	A	T	1.763e^-4	0.93	UPSTREAM E_spl_m3-HLH & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	13685240	3L_13685240_SNP [dm3] 3L_13692140_SNP [dm6]	C	A	1.766e^-4	0.93	INTRON bru-3
3R	13437047	3R_13437047_SNP [dm3] 3R_17611325_SNP [dm6]	G	A	1.767e^-4	0.93	SYNONYMOUS_CODING Edg91 DOWNSTREAM CG14329
2R	12807385	2R_12807385_SNP [dm3] 2R_16919880_SNP [dm6]	C	T	1.771e^-4	0.93	INTERGENIC
3R	9791490	3R_9791490_SNP [dm3] 3R_13965768_SNP [dm6]	T	G	1.772e^-4	0.93	SYNONYMOUS_CODING Orc2
X	12779894	X_12779894_SNP [dm3] X_12885861_SNP [dm6]	A	T	1.779e^-4	0.93	INTRON Pde9
X	9168143	X_9168143_SNP [dm3] X_9274110_SNP [dm6]	A	T	1.780e^-4	0.93	SYNONYMOUS_CODING CG16892 UPSTREAM snoRNA:CG16892-a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
X	1965744	X_1965744_SNP [dm3] X_2071711_SNP [dm6]	C	G	1.791e^-4	0.93	UTR_5_PRIME CG4199 UPSTREAM CG4061 INTRON CG4199 EXON CR44382	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17204093	2R_17204093_SNP [dm3] 2R_21316588_SNP [dm6]	A	C	1.802e^-4	0.93	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	1028210	3R_1028210_SNP [dm3] 3R_5202488_SNP [dm6]	A	G	1.820e^-4	0.93	SYNONYMOUS_CODING cno
2L	5436326	2L_5436326_SNP [dm3] 2L_5436326_SNP [dm6]	C	T	1.821e^-4	0.93	EXON CR31647
X	19157042	X_19157042_SNP [dm3] X_19263009_SNP [dm6]	A	T	1.822e^-4	0.93	INTRON Vav	TF binding site BDTNP1_TFBS_dl
2L	17197951	2L_17197951_SNP [dm3] 2L_17197951_SNP [dm6]	T	C	1.827e^-4	0.93	INTRON beat-IIIc
2L	8424922	2L_8424922_SNP [dm3] 2L_8424922_SNP [dm6]	A	G	1.828e^-4	0.93	INTRON Akap200	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	12061993	2L_12061993_SNP [dm3] 2L_12061993_SNP [dm6]	T	C	1.834e^-4	0.93	SYNONYMOUS_CODING Rab3-GAP	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8143350	2L_8143350_SNP [dm3] 2L_8143350_SNP [dm6]	G	T	1.837e^-4	0.93	DOWNSTREAM CG42762 INTRON CG8552	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
3R	13419485	3R_13419485_SNP [dm3] 3R_17593763_SNP [dm6]	A	T	1.856e^-4	0.93	UPSTREAM CG7587 INTERGENIC
3R	8642948	3R_8642948_SNP [dm3] 3R_12817226_SNP [dm6]	T	A	1.857e^-4	0.93	UPSTREAM CG31345 INTERGENIC
X	15446820	X_15446820_SNP [dm3] X_15552787_SNP [dm6]	T	A	1.866e^-4	0.93	INTRON Ac13E	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	2915569	2L_2915569_SNP [dm3] 2L_2915569_SNP [dm6]	T	C	1.866e^-4	0.93	INTRON lilli
2L	17954863	2L_17954863_SNP [dm3] 2L_17954863_SNP [dm6]	A	G	1.878e^-4	0.93	INTERGENIC
2L	7678677	2L_7678677_SNP [dm3] 2L_7678677_SNP [dm6]	T	G	1.881e^-4	0.93	UPSTREAM Myo28B1 INTRON Myo28B1
X	20702797	X_20702797_SNP [dm3] X_20831770_SNP [dm6]	C	A	1.885e^-4	0.93	INTRON shakB
X	19436366	X_19436366_DEL [dm3] X_19542333_DEL [dm6]	TCTT	T	1.896e^-4	0.93	INTRON CG32532
2L	21056780	2L_21056780_SNP [dm3] 2L_21056780_SNP [dm6]	A	T	1.901e^-4	0.93	NON_SYNONYMOUS_CODING Itgbetanu DOWNSTREAM CG9265	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14129553	X_14129553_SNP [dm3] X_14235520_SNP [dm6]	G	A	1.908e^-4	0.93	SYNONYMOUS_CODING Fbxl4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	16182587	3R_16182587_SNP [dm3] 3R_20356865_SNP [dm6]	C	T	1.913e^-4	0.93	INTERGENIC
2R	11601242	2R_11601242_SNP [dm3] 2R_15713737_SNP [dm6]	T	A	1.916e^-4	0.93	INTERGENIC
2R	17204195	2R_17204195_DEL [dm3] 2R_21316690_DEL [dm6]	TT	T	1.920e^-4	0.93	SPLICE_SITE_REGION CG9485 INTRON CG9485	TF binding site mE1_TFBS_cad
2R	19493951	2R_19493951_SNP [dm3] 2R_23606428_SNP [dm6]	A	G	1.923e^-4	0.93	SYNONYMOUS_CODING CG17662 INTRON CG17664	TF binding site mE1_TFBS_chinmo
3L	10506317	3L_10506317_SNP [dm3] 3L_10513217_SNP [dm6]	A	G	1.926e^-4	0.93	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi
X	14773052	X_14773052_SNP [dm3] X_14879019_SNP [dm6]	A	G	1.927e^-4	0.93	INTRON Flo2 & 2 others
2R	1605681	2R_1605681_SNP [dm3] 2R_5718176_SNP [dm6]	T	A	1.929e^-4	0.93	INTRON ap	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	3094024	X_3094024_SNP [dm3] X_3199991_SNP [dm6]	A	G	1.936e^-4	0.93	INTRON dnc
2R	17306586	2R_17306586_SNP [dm3] 2R_21419081_SNP [dm6]	G	A	1.936e^-4	0.93	INTRON Sdc
2L	12977807	2L_12977807_SNP [dm3] 2L_12977807_SNP [dm6]	C	T	1.941e^-4	0.93	SYNONYMOUS_CODING Vha68-2 UPSTREAM Vha68-3	TF binding site mE1_TFBS_HSA
2R	11600355	2R_11600355_SNP [dm3] 2R_15712850_SNP [dm6]	C	T	1.943e^-4	0.93	UPSTREAM CG30083 INTERGENIC
3R	12442635	3R_12442635_SNP [dm3] 3R_16616913_SNP [dm6]	G	C	1.950e^-4	0.93	NON_SYNONYMOUS_CODING CG17562
2R	17204081	2R_17204081_SNP [dm3] 2R_21316576_SNP [dm6]	G	A	1.957e^-4	0.93	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	4475178	2R_4475178_SNP [dm3] 2R_8587673_SNP [dm6]	G	A	1.958e^-4	0.93	INTERGENIC	TF binding site mE1_TFBS_cad
2L	21343846	2L_21343846_SNP [dm3] 2L_21343846_SNP [dm6]	G	A	1.960e^-4	0.93	UPSTREAM Tsp39D INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
2R	8776923	2R_8776923_SNP [dm3] 2R_12889418_SNP [dm6]	C	G	1.964e^-4	0.93	INTRON vg	regulatory region FlyBase TF binding site mE1_TFBS_sens
X	15671478	X_15671478_SNP [dm3] X_15777445_SNP [dm6]	G	A	1.993e^-4	0.93	SYNONYMOUS_CODING CG43672
3L	11087202	3L_11087202_SNP [dm3] 3L_11094102_SNP [dm6]	C	T	1.994e^-4	0.93	SYNONYMOUS_CODING CG6279 UPSTREAM JIL-1	TF binding site mE1_TFBS_chinmo
2L	753359	2L_753359_SNP [dm3] 2L_753359_SNP [dm6]	A	G	1.995e^-4	0.93	NON_SYNONYMOUS_CODING GABA-B-R3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18607017	3L_18607017_SNP [dm3] 3L_18613917_SNP [dm6]	C	T	1.997e^-4	0.93	SYNONYMOUS_CODING CG32199 INTRON CG4174 & 1 other
2L	5931540	2L_5931540_SNP [dm3] 2L_5931540_SNP [dm6]	T	G	1.998e^-4	0.93	INTRON dsf
3L	17998174	3L_17998174_DEL [dm3] 3L_18005074_DEL [dm6]	CCAC	C	2.008e^-4	0.93	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3R	25574890	3R_25574890_SNP [dm3] 3R_29749168_SNP [dm6]	A	T	2.010e^-4	0.93	UPSTREAM yata & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	13429270	3R_13429270_SNP [dm3] 3R_17603548_SNP [dm6]	A	T	2.016e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12347515	X_12347515_SNP [dm3] X_12453482_SNP [dm6]	A	G	2.019e^-4	0.93	UTR_3_PRIME Pkcdelta
3L	12554087	3L_12554087_SNP [dm3] 3L_12560987_SNP [dm6]	C	A	2.024e^-4	0.93	INTRON sowah
2L	13248636	2L_13248636_SNP [dm3] 2L_13248636_SNP [dm6]	A	C	2.024e^-4	0.93	INTRON CG16820
X	7738105	X_7738105_SNP [dm3] X_7844072_SNP [dm6]	C	T	2.024e^-4	0.93	INTERGENIC
X	12779933	X_12779933_SNP [dm3] X_12885900_SNP [dm6]	A	T	2.030e^-4	0.93	INTRON Pde9
2R	7390111	2R_7390111_SNP [dm3] 2R_11502606_SNP [dm6]	A	G	2.030e^-4	0.93	INTRON inv
2L	2739205	2L_2739205_SNP [dm3] 2L_2739205_SNP [dm6]	T	C	2.040e^-4	0.93	SYNONYMOUS_CODING CG31689 UPSTREAM Hrs
3R	13429029	3R_13429029_SNP [dm3] 3R_17603307_SNP [dm6]	A	G	2.042e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16230430	3L_16230430_SNP [dm3] 3L_16237330_SNP [dm6]	G	A	2.049e^-4	0.93	UPSTREAM l_3_72Dr DOWNSTREAM l_3_72Dp INTERGENIC
2L	2674528	2L_2674528_SNP [dm3] 2L_2674528_SNP [dm6]	T	C	2.053e^-4	0.93	INTERGENIC
X	8317421	X_8317421_SNP [dm3] X_8423388_SNP [dm6]	A	C	2.055e^-4	0.93	UTR_5_PRIME Trf2	TF binding site BDTNP1_TFBS_dl
3R	13441306	3R_13441306_SNP [dm3] 3R_17615584_SNP [dm6]	A	C	2.056e^-4	0.93	DOWNSTREAM CG14327 INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2L	6532573	2L_6532573_SNP [dm3] 2L_6532573_SNP [dm6]	C	T	2.059e^-4	0.93	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11308239	3R_11308239_SNP [dm3] 3R_15482517_SNP [dm6]	A	C	2.064e^-4	0.93	SYNONYMOUS_CODING CG14870 UPSTREAM Rh6	TF binding site mE1_TFBS_chinmo
X	3663642	X_3663642_SNP [dm3] X_3769609_SNP [dm6]	A	C	2.064e^-4	0.93	INTRON tlk
3R	16898380	3R_16898380_SNP [dm3] 3R_21072658_SNP [dm6]	G	A	2.072e^-4	0.93	SYNONYMOUS_CODING r-l	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9834745	2R_9834745_SNP [dm3] 2R_13947240_SNP [dm6]	T	A	2.075e^-4	0.93	UTR_3_PRIME AGO1 DOWNSTREAM AGO1	TF binding site BDTNP1_TFBS_z
3R	13948659	3R_13948659_DEL [dm3] 3R_18122937_DEL [dm6]	ATTTTTTTGATTTTTTGATT...	A	2.078e^-4	0.93	INTRON sr	TF binding site mE1_TFBS_inv
3R	15748318	3R_15748318_SNP [dm3] 3R_19922596_SNP [dm6]	G	T	2.083e^-4	0.93	UPSTREAM CR43282 INTRON CG4462	TF binding site mE1_TFBS_cad
3R	15748325	3R_15748325_SNP [dm3] 3R_19922603_SNP [dm6]	G	C	2.083e^-4	0.93	UPSTREAM CR43282 INTRON CG4462	TF binding site mE1_TFBS_cad
3L	11223026	3L_11223026_SNP [dm3] 3L_11229926_SNP [dm6]	G	T	2.097e^-4	0.93	UTR_3_PRIME CG42671 DOWNSTREAM CG42671
3L	16204761	3L_16204761_SNP [dm3] 3L_16211661_SNP [dm6]	T	C	2.097e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	11308218	3R_11308218_SNP [dm3] 3R_15482496_SNP [dm6]	A	C	2.100e^-4	0.93	UPSTREAM Rh6 INTRON CG14870	TF binding site mE1_TFBS_chinmo
2L	14607392	2L_14607392_SNP [dm3] 2L_14607392_SNP [dm6]	G	A	2.101e^-4	0.93	INTRON osp
2L	17245391	2L_17245391_SNP [dm3] 2L_17245391_SNP [dm6]	G	C	2.102e^-4	0.93	DOWNSTREAM CR44396 INTRON beat-IIIc
X	1672318	X_1672318_SNP [dm3] X_1778285_SNP [dm6]	G	T	2.106e^-4	0.93	INTRON Adar & 1 other
X	14946070	X_14946070_SNP [dm3] X_15052037_SNP [dm6]	G	T	2.112e^-4	0.93	DOWNSTREAM CG5541 INTRON hiw
2R	11952041	2R_11952041_SNP [dm3] 2R_16064536_SNP [dm6]	A	G	2.112e^-4	0.93	DOWNSTREAM mir-137 INTERGENIC
2L	20974192	2L_20974192_SNP [dm3] 2L_20974192_SNP [dm6]	A	T	2.121e^-4	0.93	INTRON CG42238
3R	5048381	3R_5048381_SNP [dm3] 3R_9222659_SNP [dm6]	T	C	2.125e^-4	0.93	INTRON pum
3L	7180781	3L_7180781_SNP [dm3] 3L_7187681_SNP [dm6]	A	T	2.130e^-4	0.93	INTRON Dscam2
2L	607588	2L_607588_DEL [dm3] 2L_607588_DEL [dm6]	CCA	C	2.133e^-4	0.93	DOWNSTREAM CR43649 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	24477152	3R_24477152_SNP [dm3] 3R_28651430_SNP [dm6]	G	A	2.135e^-4	0.93	UPSTREAM CG31050 INTERGENIC
3R	4468734	3R_4468734_SNP [dm3] 3R_8643012_SNP [dm6]	C	G	2.145e^-4	0.93	UPSTREAM tRNA:Y1:85Ae & 1 other DOWNSTREAM Cyp313b1 INTERGENIC	TF binding site BDTNP1_TFBS_gt mE1_TFBS_HSA
2L	11454462	2L_11454462_SNP [dm3] 2L_11454462_SNP [dm6]	C	G	2.146e^-4	0.93	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
3R	14860956	3R_14860956_SNP [dm3] 3R_19035234_SNP [dm6]	C	A	2.146e^-4	0.93	INTRON CG6026
2L	18359715	2L_18359715_SNP [dm3] 2L_18359715_SNP [dm6]	A	G	2.152e^-4	0.93	UPSTREAM Acp36DE INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	14967450	2R_14967450_SNP [dm3] 2R_19079945_SNP [dm6]	A	T	2.154e^-4	0.93	INTRON 5-HT1A
2R	19153910	2R_19153910_SNP [dm3] 2R_23266387_SNP [dm6]	A	G	2.159e^-4	0.93	UPSTREAM CG12782 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19157045	X_19157045_SNP [dm3] X_19263012_SNP [dm6]	T	G	2.164e^-4	0.93	INTRON Vav	TF binding site BDTNP1_TFBS_dl
2R	17315020	2R_17315020_SNP [dm3] 2R_21427515_SNP [dm6]	G	C	2.171e^-4	0.93	INTRON Sdc
2L	10581700	2L_10581700_SNP [dm3] 2L_10581700_SNP [dm6]	T	A	2.174e^-4	0.93	UTR_5_PRIME CG34161 INTRON Trim9
X	14774565	X_14774565_SNP [dm3] X_14880532_SNP [dm6]	T	C	2.175e^-4	0.93	INTRON Flo2 & 2 others
X	14946079	X_14946079_SNP [dm3] X_15052046_SNP [dm6]	G	T	2.177e^-4	0.93	DOWNSTREAM CG5541 INTRON hiw
2R	7848820	2R_7848820_SNP [dm3] 2R_11961315_SNP [dm6]	C	A	2.188e^-4	0.93	INTRON CG13188
2L	3690802	2L_3690802_SNP [dm3] 2L_3690802_SNP [dm6]	G	A	2.196e^-4	0.93	INTRON CG34340	TF binding site mE1_TFBS_chinmo
2L	11454454	2L_11454454_SNP [dm3] 2L_11454454_SNP [dm6]	C	T	2.199e^-4	0.93	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
2L	21163218	2L_21163218_SNP [dm3] 2L_21163218_SNP [dm6]	C	T	2.203e^-4	0.93	UPSTREAM CG9246 & 1 other DOWNSTREAM CR44910 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19471446	2L_19471446_SNP [dm3] 2L_19471446_SNP [dm6]	C	T	2.208e^-4	0.93	UPSTREAM CR45723 EXON CR43839
2L	13237366	2L_13237366_SNP [dm3] 2L_13237366_SNP [dm6]	T	A	2.211e^-4	0.93	INTRON CG5867
2R	17527963	2R_17527963_SNP [dm3] 2R_21640458_SNP [dm6]	A	T	2.217e^-4	0.93	INTERGENIC
3R	22768653	3R_22768653_SNP [dm3] 3R_26942931_SNP [dm6]	A	G	2.230e^-4	0.93	SYNONYMOUS_CODING sda	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	11223206	3L_11223206_DEL [dm3] 3L_11230106_DEL [dm6]	ACAATA	A	2.234e^-4	0.93	UTR_3_PRIME CG42671 DOWNSTREAM CG42671
X	14938966	X_14938966_INS [dm3] X_15044933_INS [dm6]	A	AA	2.242e^-4	0.93	INTRON hiw & 1 other
X	19157046	X_19157046_SNP [dm3] X_19263013_SNP [dm6]	A	T	2.247e^-4	0.93	INTRON Vav	TF binding site BDTNP1_TFBS_dl
3L	10306046	3L_10306046_SNP [dm3] 3L_10312946_SNP [dm6]	A	G	2.248e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	14663321	X_14663321_SNP [dm3] X_14769288_SNP [dm6]	C	A	2.248e^-4	0.93	INTERGENIC
3R	13429357	3R_13429357_DEL [dm3] 3R_17603635_DEL [dm6]	AA	A	2.254e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15359200	X_15359200_SNP [dm3] X_15465167_SNP [dm6]	C	T	2.259e^-4	0.93	UPSTREAM CG6299 DOWNSTREAM CG6294 INTRON CG6299 & 1 other
X	3662674	X_3662674_SNP [dm3] X_3768641_SNP [dm6]	G	A	2.264e^-4	0.93	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	20900454	3L_20900454_SNP [dm3] 3L_20907354_SNP [dm6]	C	T	2.265e^-4	0.93	INTERGENIC
X	6127581	X_6127581_SNP [dm3] X_6233548_SNP [dm6]	T	A	2.276e^-4	0.93	UTR_3_PRIME CG14446 DOWNSTREAM CG14446
2L	606906	2L_606906_SNP [dm3] 2L_606906_SNP [dm6]	C	A	2.280e^-4	0.93	DOWNSTREAM CR43648 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	606986	2L_606986_SNP [dm3] 2L_606986_SNP [dm6]	A	G	2.280e^-4	0.93	DOWNSTREAM CR43648 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	21338547	2L_21338547_SNP [dm3] 2L_21338547_SNP [dm6]	G	A	2.283e^-4	0.93	UPSTREAM dimm INTRON dimm	TF binding site BDTNP1_TFBS_dl
3L	1937583	3L_1937583_SNP [dm3] 3L_1937583_SNP [dm6]	G	A	2.289e^-4	0.93	INTRON CG5687
2R	2802636	2R_2802636_SNP [dm3] 2R_6915131_SNP [dm6]	T	C	2.306e^-4	0.93	INTRON CG30158
2L	18357401	2L_18357401_SNP [dm3] 2L_18357401_SNP [dm6]	T	C	2.306e^-4	0.93	SYNONYMOUS_CODING Acp36DE INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens
3R	12516871	3R_12516871_INS [dm3] 3R_16691149_INS [dm6]	A	AA	2.311e^-4	0.93	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20532290	2R_20532290_SNP [dm3] 2R_24644767_SNP [dm6]	C	G	2.321e^-4	0.93	INTERGENIC
3R	24061594	3R_24061594_SNP [dm3] 3R_28235872_SNP [dm6]	G	A	2.327e^-4	0.93	INTRON CG34354	TF binding site mE1_TFBS_chinmo
X	14939646	X_14939646_SNP [dm3] X_15045613_SNP [dm6]	A	T	2.336e^-4	0.93	INTRON hiw & 1 other
2R	16091960	2R_16091960_SNP [dm3] 2R_20204455_SNP [dm6]	T	G	2.338e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	16655186	2L_16655186_SNP [dm3] 2L_16655186_SNP [dm6]	G	T	2.347e^-4	0.93	INTRON CG42389
2R	14981964	2R_14981964_SNP [dm3] 2R_19094459_SNP [dm6]	A	G	2.356e^-4	0.93	SYNONYMOUS_CODING Ir56a INTRON 5-HT1A
2L	12977243	2L_12977243_SNP [dm3] 2L_12977243_SNP [dm6]	C	T	2.356e^-4	0.93	SYNONYMOUS_CODING Vha68-2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6351585	2L_6351585_SNP [dm3] 2L_6351585_SNP [dm6]	C	A	2.357e^-4	0.93	UPSTREAM CG9498 DOWNSTREAM ppk7 INTERGENIC	TF binding site mE1_TFBS_cnc
2R	14981624	2R_14981624_SNP [dm3] 2R_19094119_SNP [dm6]	A	C	2.358e^-4	0.93	SYNONYMOUS_CODING 5-HT1A DOWNSTREAM Ir56a	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	17241096	3L_17241096_SNP [dm3] 3L_17247996_SNP [dm6]	A	G	2.365e^-4	0.93	INTRON CR43870
X	1964202	X_1964202_SNP [dm3] X_2070169_SNP [dm6]	A	G	2.365e^-4	0.93	DOWNSTREAM CG4194 INTRON CG4199	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	20424375	X_20424375_DEL [dm3] X_20553348_DEL [dm6]	TTATTT	T	2.367e^-4	0.93	INTRON RunxB
X	16558342	X_16558342_SNP [dm3] X_16664309_SNP [dm6]	A	G	2.368e^-4	0.93	SYNONYMOUS_CODING CG15865 INTRON r
2R	12828604	2R_12828604_SNP [dm3] 2R_16941099_SNP [dm6]	A	G	2.371e^-4	0.93	INTRON Pkc53E
3R	1026783	3R_1026783_SNP [dm3] 3R_5201061_SNP [dm6]	A	T	2.375e^-4	0.93	INTRON cno
2R	17203370	2R_17203370_SNP [dm3] 2R_21315865_SNP [dm6]	G	A	2.377e^-4	0.93	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad
3L	22694330	3L_22694330_SNP [dm3] 3L_22701230_SNP [dm6]	G	A	2.385e^-4	0.93	INTERGENIC
3L	11870411	3L_11870411_SNP [dm3] 3L_11877311_SNP [dm6]	C	T	2.387e^-4	0.93	INTRON CG44837
2L	18020426	2L_18020426_SNP [dm3] 2L_18020426_SNP [dm6]	A	G	2.390e^-4	0.93	INTRON rdo
2L	12468669	2L_12468669_SNP [dm3] 2L_12468669_SNP [dm6]	A	C	2.390e^-4	0.93	INTRON bun	TF binding site BDTNP1_TFBS_dl
3R	13429369	3R_13429369_INS [dm3] 3R_17603647_INS [dm6]	T	TAAAAGATT	2.390e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12779492	X_12779492_SNP [dm3] X_12885459_SNP [dm6]	A	G	2.394e^-4	0.93	INTRON Pde9
2L	21008801	2L_21008801_SNP [dm3] 2L_21008801_SNP [dm6]	A	C	2.402e^-4	0.93	INTRON CG42238
2R	12273636	2R_12273636_SNP [dm3] 2R_16386131_SNP [dm6]	C	T	2.406e^-4	0.93	UPSTREAM Sema-2b DOWNSTREAM CG43187 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	18510458	2R_18510458_SNP [dm3] 2R_22622953_SNP [dm6]	G	C	2.406e^-4	0.93	INTRON CG33143
2L	21675028	2L_21675028_SNP [dm3] 2L_21675028_SNP [dm6]	T	A	2.406e^-4	0.93	INTRON CG2225	transposable element FlyBase
2R	12489138	2R_12489138_SNP [dm3] 2R_16601633_SNP [dm6]	G	A	2.409e^-4	0.93	INTRON CG8303
2L	6903398	2L_6903398_SNP [dm3] 2L_6903398_SNP [dm6]	A	T	2.416e^-4	0.93	INTRON Nlg2
3R	25574897	3R_25574897_SNP [dm3] 3R_29749175_SNP [dm6]	T	C	2.425e^-4	0.93	UPSTREAM yata & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	15454308	X_15454308_SNP [dm3] X_15560275_SNP [dm6]	G	A	2.429e^-4	0.93	INTERGENIC
2L	21065272	2L_21065272_SNP [dm3] 2L_21065272_SNP [dm6]	A	G	2.430e^-4	0.93	INTRON CG9265
X	13252771	X_13252771_SNP [dm3] X_13358738_SNP [dm6]	C	T	2.431e^-4	0.93	UPSTREAM Syt12 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	756958	2L_756958_SNP [dm3] 2L_756958_SNP [dm6]	C	T	2.433e^-4	0.93	SYNONYMOUS_CODING GABA-B-R3 UTR_3_PRIME GABA-B-R3	TF binding site mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
2L	5735582	2L_5735582_SNP [dm3] 2L_5735582_SNP [dm6]	A	G	2.433e^-4	0.93	SYNONYMOUS_CODING CG11147 INTRON CG11030	TF binding site mE1_TFBS_HSA
3L	2054462	3L_2054462_SNP [dm3] 3L_2054462_SNP [dm6]	C	T	2.434e^-4	0.93	SYNONYMOUS_CODING sls INTRON sls
3R	5048372	3R_5048372_SNP [dm3] 3R_9222650_SNP [dm6]	C	T	2.439e^-4	0.93	INTRON pum
3L	1937584	3L_1937584_SNP [dm3] 3L_1937584_SNP [dm6]	A	G	2.439e^-4	0.93	INTRON CG5687
2R	20191527	2R_20191527_SNP [dm3] 2R_24304004_SNP [dm6]	C	T	2.454e^-4	0.934	INTERGENIC	regulatory region REDfly_CRMs
2L	18357383	2L_18357383_SNP [dm3] 2L_18357383_SNP [dm6]	T	A	2.463e^-4	0.934	SYNONYMOUS_CODING Acp36DE INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens
3L	9509377	3L_9509377_SNP [dm3] 3L_9516277_SNP [dm6]	G	A	2.469e^-4	0.934	INTRON CG33700
X	15446691	X_15446691_SNP [dm3] X_15552658_SNP [dm6]	T	G	2.470e^-4	0.934	INTRON Ac13E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	1678574	X_1678574_SNP [dm3] X_1784541_SNP [dm6]	A	T	2.483e^-4	0.935	UTR_3_PRIME Adar DOWNSTREAM Adar INTRON CG42666
2L	7442687	2L_7442687_INS [dm3] 2L_7442687_INS [dm6]	T	TT	2.483e^-4	0.935	UPSTREAM CG5973 INTRON CG5973
2R	13521868	2R_13521868_SNP [dm3] 2R_17634363_SNP [dm6]	T	A	2.490e^-4	0.935	UPSTREAM rhi & 1 other INTRON CG10936	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6633585	2R_6633585_SNP [dm3] 2R_10746080_SNP [dm6]	A	G	2.497e^-4	0.935	INTRON CG33144	TF binding site mE1_TFBS_HSA
3L	10894834	3L_10894834_SNP [dm3] 3L_10901734_SNP [dm6]	A	G	2.497e^-4	0.935	INTERGENIC
2L	16242089	2L_16242089_SNP [dm3] 2L_16242089_SNP [dm6]	C	G	2.502e^-4	0.935	NON_SYNONYMOUS_CODING CG42818 DOWNSTREAM CG42817
3L	14544798	3L_14544798_SNP [dm3] 3L_14551698_SNP [dm6]	G	C	2.511e^-4	0.936	UPSTREAM CG9238 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	15676942	X_15676942_SNP [dm3] X_15782909_SNP [dm6]	C	T	2.516e^-4	0.936	SYNONYMOUS_CODING Efhc1.1	TF binding site mE1_TFBS_sens
3R	12519652	3R_12519652_SNP [dm3] 3R_16693930_SNP [dm6]	G	C	2.526e^-4	0.938	INTRON Ubx	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	16122334	3L_16122334_SNP [dm3] 3L_16129234_SNP [dm6]	T	A	2.533e^-4	0.939	UPSTREAM Pgm & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
3R	25322016	3R_25322016_SNP [dm3] 3R_29496294_SNP [dm6]	C	A	2.540e^-4	0.939	UPSTREAM CG2010 INTRON CG2010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	5048281	3R_5048281_SNP [dm3] 3R_9222559_SNP [dm6]	A	C	2.556e^-4	0.939	INTRON pum
2L	16728911	2L_16728911_SNP [dm3] 2L_16728911_SNP [dm6]	C	A	2.558e^-4	0.939	UPSTREAM CG31812 EXON CR43671	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	14398671	2L_14398671_SNP [dm3] 2L_14398671_SNP [dm6]	T	G	2.560e^-4	0.939	INTRON elB
3L	16120905	3L_16120905_SNP [dm3] 3L_16127805_SNP [dm6]	T	C	2.573e^-4	0.939	INTRON Pgm	TF binding site mE1_TFBS_cad
2R	1776205	2R_1776205_SNP [dm3] 2R_5888700_SNP [dm6]	T	C	2.587e^-4	0.939	INTERGENIC
2L	2810948	2L_2810948_SNP [dm3] 2L_2810948_SNP [dm6]	G	C	2.597e^-4	0.939	INTRON daw	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	22141272	2L_22141272_SNP [dm3] 2L_22141272_SNP [dm6]	G	C	2.599e^-4	0.939	INTRON CG42748
X	14944908	X_14944908_SNP [dm3] X_15050875_SNP [dm6]	T	G	2.618e^-4	0.939	SYNONYMOUS_CODING CG5541 INTRON hiw	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13591028	3L_13591028_SNP [dm3] 3L_13597928_SNP [dm6]	A	T	2.638e^-4	0.939	INTRON bru-3
3L	6530443	3L_6530443_SNP [dm3] 3L_6537343_SNP [dm6]	C	T	2.641e^-4	0.939	INTRON sfl
X	1955035	X_1955035_SNP [dm3] X_2061002_SNP [dm6]	C	T	2.648e^-4	0.939	INTRON Sik2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	17236478	3L_17236478_SNP [dm3] 3L_17243378_SNP [dm6]	A	C	2.649e^-4	0.939	UPSTREAM CG7707 INTERGENIC
2R	19153452	2R_19153452_SNP [dm3] 2R_23265929_SNP [dm6]	A	G	2.650e^-4	0.939	UPSTREAM CG12782 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	13417686	3R_13417686_SNP [dm3] 3R_17591964_SNP [dm6]	G	T	2.653e^-4	0.939	INTERGENIC
X	6730529	X_6730529_SNP [dm3] X_6836496_SNP [dm6]	G	A	2.655e^-4	0.939	SYNONYMOUS_CODING nonC	TF binding site mE1_TFBS_cad
2L	2736048	2L_2736048_SNP [dm3] 2L_2736048_SNP [dm6]	C	T	2.677e^-4	0.939	UTR_5_PRIME CG31689 INTRON CG31689
3R	23382105	3R_23382105_SNP [dm3] 3R_27556383_SNP [dm6]	G	T	2.685e^-4	0.939	INTRON Klp98A	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
3L	3818796	3L_3818796_SNP [dm3] 3L_3818796_SNP [dm6]	A	G	2.693e^-4	0.939	START_GAINED enc UTR_5_PRIME enc DOWNSTREAM Scsalpha	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7738103	X_7738103_SNP [dm3] X_7844070_SNP [dm6]	T	C	2.695e^-4	0.939	INTERGENIC
2L	13995839	2L_13995839_SNP [dm3] 2L_13995839_SNP [dm6]	G	T	2.710e^-4	0.939	INTRON rk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18505350	2R_18505350_SNP [dm3] 2R_22617845_SNP [dm6]	A	T	2.713e^-4	0.939	INTRON CG33143	TF binding site mE1_TFBS_cad
X	14824592	X_14824592_SNP [dm3] X_14930559_SNP [dm6]	C	A	2.716e^-4	0.939	INTRON Flo2	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14939415	X_14939415_SNP [dm3] X_15045382_SNP [dm6]	C	A	2.716e^-4	0.939	INTRON hiw & 1 other
2R	17596515	2R_17596515_SNP [dm3] 2R_21709010_SNP [dm6]	T	A	2.723e^-4	0.939	DOWNSTREAM CG30403 INTRON HmgD EXON CR44749	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	5022095	3R_5022095_SNP [dm3] 3R_9196373_SNP [dm6]	C	T	2.726e^-4	0.939	INTRON pum
3L	14120978	3L_14120978_SNP [dm3] 3L_14127878_SNP [dm6]	T	G	2.731e^-4	0.939	INTRON Sox21b
3R	10348455	3R_10348455_SNP [dm3] 3R_14522733_SNP [dm6]	G	A	2.734e^-4	0.939	SYNONYMOUS_CODING Cyp313a1 INTRON Pde6
2R	14767655	2R_14767655_SNP [dm3] 2R_18880150_SNP [dm6]	T	A	2.734e^-4	0.939	INTRON sano
2R	8827795	2R_8827795_SNP [dm3] 2R_12940290_SNP [dm6]	C	T	2.738e^-4	0.939	SYNONYMOUS_CODING Sans DOWNSTREAM Mdr49	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	12934982	3R_12934982_SNP [dm3] 3R_17109260_SNP [dm6]	C	T	2.740e^-4	0.939	INTRON cher
3L	8248500	3L_8248500_SNP [dm3] 3L_8255400_SNP [dm6]	C	T	2.745e^-4	0.939	SYNONYMOUS_CODING Dscam4
2R	12273841	2R_12273841_SNP [dm3] 2R_16386336_SNP [dm6]	G	T	2.750e^-4	0.939	UPSTREAM Sema-2b DOWNSTREAM CG43187 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	12779526	X_12779526_SNP [dm3] X_12885493_SNP [dm6]	T	C	2.751e^-4	0.939	INTRON Pde9
3L	6564467	3L_6564467_SNP [dm3] 3L_6571367_SNP [dm6]	G	T	2.752e^-4	0.939	INTRON CG18769 & 1 other
3R	18541742	3R_18541742_SNP [dm3] 3R_22716020_SNP [dm6]	G	A	2.763e^-4	0.939	SYNONYMOUS_CODING wge	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8143135	2L_8143135_SNP [dm3] 2L_8143135_SNP [dm6]	T	C	2.764e^-4	0.939	DOWNSTREAM CG42762 INTRON CG8552	TF binding site BDTNP1_TFBS_hb
X	15446505	X_15446505_SNP [dm3] X_15552472_SNP [dm6]	C	T	2.765e^-4	0.939	INTRON Ac13E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	25574904	3R_25574904_SNP [dm3] 3R_29749182_SNP [dm6]	C	T	2.780e^-4	0.939	UPSTREAM yata & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	17304804	2L_17304804_SNP [dm3] 2L_17304804_SNP [dm6]	T	A	2.783e^-4	0.939	INTERGENIC
2R	4474367	2R_4474367_SNP [dm3] 2R_8586862_SNP [dm6]	T	A	2.796e^-4	0.939	INTERGENIC	transposable element FlyBase
2L	6238123	2L_6238123_SNP [dm3] 2L_6238123_SNP [dm6]	C	T	2.798e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
3L	7302188	3L_7302188_SNP [dm3] 3L_7309088_SNP [dm6]	T	C	2.800e^-4	0.939	INTRON unc-13-4A
2R	1126712	2R_1126712_SNP [dm3] 2R_5239207_SNP [dm6]	G	T	2.809e^-4	0.939	INTRON Nipped-A	transposable element FlyBase
2L	21261186	2L_21261186_SNP [dm3] 2L_21261186_SNP [dm6]	C	A	2.813e^-4	0.939	START_GAINED l_2_k14505 UTR_5_PRIME l_2_k14505	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
X	7470776	X_7470776_SNP [dm3] X_7576743_SNP [dm6]	C	T	2.814e^-4	0.939	UTR_3_PRIME CG11369	regulatory region REDfly_CRMs
3L	7431226	3L_7431226_SNP [dm3] 3L_7438126_SNP [dm6]	G	T	2.824e^-4	0.939	UPSTREAM CG14835 DOWNSTREAM sphinx1 INTRON CG42458
3L	15411382	3L_15411382_DEL [dm3] 3L_15418282_DEL [dm6]	AC	A	2.845e^-4	0.939	INTERGENIC
X	15676894	X_15676894_SNP [dm3] X_15782861_SNP [dm6]	T	C	2.848e^-4	0.939	SYNONYMOUS_CODING Efhc1.1	TF binding site mE1_TFBS_sens
3L	4891290	3L_4891290_SNP [dm3] 3L_4891290_SNP [dm6]	C	T	2.854e^-4	0.939	SYNONYMOUS_CODING CG17150
X	2987421	X_2987421_SNP [dm3] X_3093388_SNP [dm6]	A	T	2.855e^-4	0.939	INTRON kirre	regulatory region REDfly_CRMs
3L	19038619	3L_19038619_DEL [dm3] 3L_19045519_DEL [dm6]	TT	T	2.856e^-4	0.939	UPSTREAM nkd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	22270989	3R_22270989_SNP [dm3] 3R_26445267_SNP [dm6]	G	C	2.856e^-4	0.939	INTRON tx
3R	12934964	3R_12934964_DEL [dm3] 3R_17109242_DEL [dm6]	AAACATATC	A	2.856e^-4	0.939	INTRON cher
2R	1024401	2R_1024401_SNP [dm3] 2R_5136896_SNP [dm6]	T	C	2.860e^-4	0.939	INTERGENIC	transposable element FlyBase
2L	3852846	2L_3852846_SNP [dm3] 2L_3852846_SNP [dm6]	A	G	2.863e^-4	0.939	DOWNSTREAM CR45451 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1
2L	19441043	2L_19441043_SNP [dm3] 2L_19441043_SNP [dm6]	G	A	2.864e^-4	0.939	UPSTREAM CG10237 & 1 other INTRON CG10237	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6561992	X_6561992_SNP [dm3] X_6667959_SNP [dm6]	A	G	2.865e^-4	0.939	UTR_3_PRIME Ctr1A DOWNSTREAM CG3198 & 1 other
3L	2493866	3L_2493866_SNP [dm3] 3L_2493866_SNP [dm6]	G	T	2.894e^-4	0.939	UPSTREAM CG45186 INTRON CG45186
3R	25574886	3R_25574886_SNP [dm3] 3R_29749164_SNP [dm6]	G	A	2.897e^-4	0.939	UPSTREAM yata & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	9730205	3R_9730205_SNP [dm3] 3R_13904483_SNP [dm6]	A	T	2.903e^-4	0.939	UTR_3_PRIME ems
X	14927952	X_14927952_SNP [dm3] X_15033919_SNP [dm6]	G	C	2.910e^-4	0.939	SYNONYMOUS_CODING be UTR_3_PRIME be INTRON hiw
X	5809548	X_5809548_SNP [dm3] X_5915515_SNP [dm6]	T	G	2.917e^-4	0.939	UPSTREAM CG3011 DOWNSTREAM CR44108 INTRON CG3011
3R	16523305	3R_16523305_SNP [dm3] 3R_20697583_SNP [dm6]	G	A	2.934e^-4	0.939	INTRON Oamb
2L	2744735	2L_2744735_SNP [dm3] 2L_2744735_SNP [dm6]	C	T	2.939e^-4	0.939	UPSTREAM Cwc25 INTRON CG9961	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
2R	19086078	2R_19086078_DEL [dm3] 2R_23198555_DEL [dm6]	CC	C	2.940e^-4	0.939	INTRON CG34371	TF binding site BDTNP1_TFBS_twi
X	14925810	X_14925810_SNP [dm3] X_15031777_SNP [dm6]	T	C	2.945e^-4	0.939	SYNONYMOUS_CODING be INTRON hiw	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14943233	X_14943233_SNP [dm3] X_15049200_SNP [dm6]	C	T	2.947e^-4	0.939	SYNONYMOUS_CODING CG5541 INTRON hiw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	21675977	2L_21675977_SNP [dm3] 2L_21675977_SNP [dm6]	A	T	2.956e^-4	0.939	UTR_5_PRIME CG2225 INTRON CG2225	transposable element FlyBase
2R	20204293	2R_20204293_SNP [dm3] 2R_24316770_SNP [dm6]	A	G	2.961e^-4	0.939	INTERGENIC
2L	9832352	2L_9832352_DEL [dm3] 2L_9832352_DEL [dm6]	TTT	T	2.966e^-4	0.939	INTRON nAChRalpha6
2L	10883979	2L_10883979_SNP [dm3] 2L_10883979_SNP [dm6]	C	T	2.967e^-4	0.939	INTERGENIC
X	15317570	X_15317570_SNP [dm3] X_15423537_SNP [dm6]	C	G	2.975e^-4	0.939	INTRON Cngl
2L	13237369	2L_13237369_SNP [dm3] 2L_13237369_SNP [dm6]	A	C	2.976e^-4	0.939	INTRON CG5867
X	14941721	X_14941721_SNP [dm3] X_15047688_SNP [dm6]	A	G	2.982e^-4	0.939	INTRON hiw & 1 other
3L	10508511	3L_10508511_DEL [dm3] 3L_10515411_DEL [dm6]	AAA	T	2.988e^-4	0.939	UPSTREAM A2bp1 INTRON A2bp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	22783581	3L_22783581_SNP [dm3] 3L_22790481_SNP [dm6]	A	C	2.997e^-4	0.939	UTR_3_PRIME jim
3R	5771339	3R_5771339_SNP [dm3] 3R_9945617_SNP [dm6]	T	A	2.999e^-4	0.939	DOWNSTREAM Glut4EF INTRON Glut4EF	TF binding site mE1_TFBS_cad
3L	10894831	3L_10894831_SNP [dm3] 3L_10901731_SNP [dm6]	G	T	2.999e^-4	0.939	INTERGENIC
X	19436363	X_19436363_SNP [dm3] X_19542330_SNP [dm6]	G	C	3.001e^-4	0.939	INTRON CG32532
X	19436364	X_19436364_SNP [dm3] X_19542331_SNP [dm6]	T	A	3.002e^-4	0.939	INTRON CG32532
2R	15100190	2R_15100190_SNP [dm3] 2R_19212685_SNP [dm6]	G	A	3.031e^-4	0.939	INTRON hppy	TF binding site mE1_TFBS_inv
3R	20906715	3R_20906715_SNP [dm3] 3R_25080993_SNP [dm6]	A	C	3.035e^-4	0.939	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4370695	2L_4370695_SNP [dm3] 2L_4370695_SNP [dm6]	T	A	3.037e^-4	0.939	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
3L	15436321	3L_15436321_SNP [dm3] 3L_15443221_SNP [dm6]	T	C	3.038e^-4	0.939	INTERGENIC
2L	21008800	2L_21008800_SNP [dm3] 2L_21008800_SNP [dm6]	C	A	3.042e^-4	0.939	INTRON CG42238
3R	12598570	3R_12598570_SNP [dm3] 3R_16772848_SNP [dm6]	T	C	3.055e^-4	0.939	INTRON bxd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	14330780	X_14330780_SNP [dm3] X_14436747_SNP [dm6]	T	C	3.067e^-4	0.939	INTRON dpr8
2L	18429747	2L_18429747_SNP [dm3] 2L_18429747_SNP [dm6]	T	C	3.067e^-4	0.939	INTERGENIC
X	16507205	X_16507205_SNP [dm3] X_16613172_SNP [dm6]	G	T	3.069e^-4	0.939	INTRON mbt
2R	9826614	2R_9826614_SNP [dm3] 2R_13939109_SNP [dm6]	G	A	3.074e^-4	0.939	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	14665062	2R_14665062_SNP [dm3] 2R_18777557_SNP [dm6]	T	C	3.077e^-4	0.939	UPSTREAM CG15093 DOWNSTREAM CR43964 INTERGENIC
X	14928066	X_14928066_SNP [dm3] X_15034033_SNP [dm6]	T	C	3.086e^-4	0.939	SYNONYMOUS_CODING be UTR_3_PRIME be INTRON hiw
X	12987168	X_12987168_SNP [dm3] X_13093135_SNP [dm6]	T	C	3.088e^-4	0.939	INTRON lic
3L	2493910	3L_2493910_SNP [dm3] 3L_2493910_SNP [dm6]	G	A	3.089e^-4	0.939	UPSTREAM CG45186 INTRON CG45186
3L	9509352	3L_9509352_SNP [dm3] 3L_9516252_SNP [dm6]	A	G	3.110e^-4	0.939	INTRON CG33700
3L	10208104	3L_10208104_SNP [dm3] 3L_10215004_SNP [dm6]	C	T	3.112e^-4	0.939	UPSTREAM CG8065 INTERGENIC
3R	24985375	3R_24985375_INS [dm3] 3R_29159653_INS [dm6]	A	AGACAGTGTCAT...	3.113e^-4	0.939	INTRON CG11897
3R	20773614	3R_20773614_SNP [dm3] 3R_24947892_SNP [dm6]	G	C	3.142e^-4	0.939	SYNONYMOUS_CODING CG13646 DOWNSTREAM Nmnat	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11598548	2R_11598548_SNP [dm3] 2R_15711043_SNP [dm6]	G	A	3.143e^-4	0.939	DOWNSTREAM CG30083 INTERGENIC
X	15446504	X_15446504_SNP [dm3] X_15552471_SNP [dm6]	C	A	3.145e^-4	0.939	INTRON Ac13E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	14544383	3L_14544383_SNP [dm3] 3L_14551283_SNP [dm6]	C	T	3.150e^-4	0.939	UPSTREAM CG9238 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
2L	19461396	2L_19461396_SNP [dm3] 2L_19461396_SNP [dm6]	C	G	3.150e^-4	0.939	INTERGENIC
X	19749787	X_19749787_SNP [dm3] X_19855754_SNP [dm6]	G	T	3.165e^-4	0.939	NON_SYNONYMOUS_CODING Nup205	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4411482	2R_4411482_SNP [dm3] 2R_8523977_SNP [dm6]	C	T	3.165e^-4	0.939	INTRON mtt
X	3820896	X_3820896_SNP [dm3] X_3926863_SNP [dm6]	C	A	3.176e^-4	0.939	INTRON CG42541
2L	14002399	2L_14002399_SNP [dm3] 2L_14002399_SNP [dm6]	C	A	3.184e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	8739162	2L_8739162_SNP [dm3] 2L_8739162_SNP [dm6]	C	T	3.187e^-4	0.939	INTRON raw
3L	11087218	3L_11087218_SNP [dm3] 3L_11094118_SNP [dm6]	C	T	3.189e^-4	0.939	NON_SYNONYMOUS_CODING CG6279 UPSTREAM JIL-1	TF binding site mE1_TFBS_chinmo
3R	12043825	3R_12043825_INS [dm3] 3R_16218103_INS [dm6]	A	AA	3.198e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	21677151	2L_21677151_SNP [dm3] 2L_21677151_SNP [dm6]	T	A	3.203e^-4	0.939	UTR_5_PRIME CG2225 UPSTREAM CG2225 DOWNSTREAM EF2 INTRON CG2225	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	3896436	2L_3896436_SNP [dm3] 2L_3896436_SNP [dm6]	C	A	3.205e^-4	0.939	UPSTREAM capu INTRON capu	TF binding site mE1_TFBS_Trl
3L	22067060	3L_22067060_SNP [dm3] 3L_22073960_SNP [dm6]	C	A	3.220e^-4	0.939	NON_SYNONYMOUS_CODING CG7133	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	15446698	X_15446698_SNP [dm3] X_15552665_SNP [dm6]	T	A	3.225e^-4	0.939	INTRON Ac13E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11353973	3L_11353973_SNP [dm3] 3L_11360873_SNP [dm6]	T	A	3.227e^-4	0.939	INTERGENIC
X	4257079	X_4257079_INS [dm3] X_4363046_INS [dm6]	A	ACA	3.228e^-4	0.939	UTR_3_PRIME norpA
2L	8217058	2L_8217058_SNP [dm3] 2L_8217058_SNP [dm6]	G	C	3.228e^-4	0.939	SYNONYMOUS_CODING CG8292 DOWNSTREAM CG8349	TF binding site mE1_TFBS_HSA
3L	3406015	3L_3406015_SNP [dm3] 3L_3406015_SNP [dm6]	A	G	3.230e^-4	0.939	INTRON sty
3L	2493886	3L_2493886_SNP [dm3] 3L_2493886_SNP [dm6]	T	G	3.231e^-4	0.939	UPSTREAM CG45186 INTRON CG45186
3L	2493772	3L_2493772_SNP [dm3] 3L_2493772_SNP [dm6]	C	T	3.238e^-4	0.939	UPSTREAM CG45186 INTRON CG45186
3L	18601520	3L_18601520_SNP [dm3] 3L_18608420_SNP [dm6]	G	A	3.239e^-4	0.939	INTRON CG4174 & 2 others
3R	8643034	3R_8643034_SNP [dm3] 3R_12817312_SNP [dm6]	T	G	3.245e^-4	0.939	UPSTREAM CG31345 INTERGENIC
3L	13002851	3L_13002851_SNP [dm3] 3L_13009751_SNP [dm6]	G	C	3.248e^-4	0.939	NON_SYNONYMOUS_CODING CG11261 DOWNSTREAM CG14117
3R	14302896	3R_14302896_SNP [dm3] 3R_18477174_SNP [dm6]	A	G	3.251e^-4	0.939	INTRON fru
3L	11342016	3L_11342016_SNP [dm3] 3L_11348916_SNP [dm6]	T	A	3.253e^-4	0.939	DOWNSTREAM CR45251 INTERGENIC
3R	3330620	3R_3330620_SNP [dm3] 3R_7504898_SNP [dm6]	C	A	3.258e^-4	0.939	UTR_5_PRIME alpha-Est9
2L	16669718	2L_16669718_SNP [dm3] 2L_16669718_SNP [dm6]	C	T	3.263e^-4	0.939	INTRON Trpgamma
2R	12273593	2R_12273593_SNP [dm3] 2R_16386088_SNP [dm6]	T	C	3.267e^-4	0.939	UPSTREAM Sema-2b DOWNSTREAM CG43187 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	21328415	2L_21328415_SNP [dm3] 2L_21328415_SNP [dm6]	G	C	3.283e^-4	0.939	INTERGENIC
2L	10650145	2L_10650145_SNP [dm3] 2L_10650145_SNP [dm6]	A	T	3.288e^-4	0.939	UTR_3_PRIME CG17097 UPSTREAM CR44580
2L	6102203	2L_6102203_SNP [dm3] 2L_6102203_SNP [dm6]	C	G	3.295e^-4	0.939	INTRON stai
3L	4642864	3L_4642864_INS [dm3] 3L_4642864_INS [dm6]	A	ATAT	3.306e^-4	0.939	INTRON axo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4642868	3L_4642868_SNP [dm3] 3L_4642868_SNP [dm6]	A	T	3.306e^-4	0.939	INTRON axo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3375485	2L_3375485_SNP [dm3] 2L_3375485_SNP [dm6]	A	T	3.308e^-4	0.939	UTR_5_PRIME CG15412 DOWNSTREAM CG9662	TF binding site mE1_TFBS_inv
X	14926449	X_14926449_SNP [dm3] X_15032416_SNP [dm6]	A	T	3.310e^-4	0.939	SYNONYMOUS_CODING be INTRON hiw
2R	7849257	2R_7849257_SNP [dm3] 2R_11961752_SNP [dm6]	A	G	3.313e^-4	0.939	SYNONYMOUS_CODING CG13188
3R	19055902	3R_19055902_DEL [dm3] 3R_23230180_DEL [dm6]	CATAC	C	3.321e^-4	0.939	UTR_3_PRIME CG4467
2L	2743438	2L_2743438_SNP [dm3] 2L_2743438_SNP [dm6]	A	C	3.332e^-4	0.939	UTR_3_PRIME CG9961 DOWNSTREAM Hrs
2L	22318990	2L_22318990_SNP [dm3] 2L_22318990_SNP [dm6]	G	A	3.336e^-4	0.939	INTRON CG17018
2L	4190517	2L_4190517_SNP [dm3] 2L_4190517_SNP [dm6]	C	G	3.337e^-4	0.939	INTRON CG3714	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4388793	2L_4388793_SNP [dm3] 2L_4388793_SNP [dm6]	A	C	3.340e^-4	0.939	SYNONYMOUS_CODING Tps1
2L	20914880	2L_20914880_SNP [dm3] 2L_20914880_SNP [dm6]	G	T	3.350e^-4	0.939	INTRON sky & 1 other	TF binding site mE1_TFBS_D mE1_TFBS_HSA transposable element FlyBase
2L	13765551	2L_13765551_SNP [dm3] 2L_13765551_SNP [dm6]	C	T	3.356e^-4	0.939	INTRON TM9SF4
2L	16242079	2L_16242079_SNP [dm3] 2L_16242079_SNP [dm6]	A	G	3.363e^-4	0.939	UTR_5_PRIME CG42818 DOWNSTREAM CG42817
2L	1886989	2L_1886989_DEL [dm3] 2L_1886989_DEL [dm6]	CC	C	3.366e^-4	0.939	INTRON CG7337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	19786658	X_19786658_SNP [dm3] X_19892625_SNP [dm6]	T	C	3.371e^-4	0.939	INTRON Hers
2L	4886659	2L_4886659_SNP [dm3] 2L_4886659_SNP [dm6]	A	T	3.383e^-4	0.939	DOWNSTREAM CG3008 INTERGENIC
2R	6945299	2R_6945299_SNP [dm3] 2R_11057794_SNP [dm6]	G	T	3.388e^-4	0.939	INTRON luna
3R	1026776	3R_1026776_SNP [dm3] 3R_5201054_SNP [dm6]	G	C	3.397e^-4	0.939	INTRON cno
3R	13450612	3R_13450612_SNP [dm3] 3R_17624890_SNP [dm6]	T	C	3.398e^-4	0.939	UPSTREAM AttD & 2 others INTERGENIC
3L	9933992	3L_9933992_SNP [dm3] 3L_9940892_SNP [dm6]	A	C	3.400e^-4	0.939	INTRON CG34356
3R	25200467	3R_25200467_SNP [dm3] 3R_29374745_SNP [dm6]	C	T	3.401e^-4	0.939	INTERGENIC
2L	11225353	2L_11225353_SNP [dm3] 2L_11225353_SNP [dm6]	G	A	3.404e^-4	0.939	INTRON ab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	5771502	2L_5771502_SNP [dm3] 2L_5771502_SNP [dm6]	T	C	3.416e^-4	0.939	DOWNSTREAM CR31912 INTRON CG9171 EXON CR31912	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
2L	18430038	2L_18430038_SNP [dm3] 2L_18430038_SNP [dm6]	A	G	3.421e^-4	0.939	INTERGENIC
2L	16005772	2L_16005772_SNP [dm3] 2L_16005772_SNP [dm6]	T	A	3.429e^-4	0.939	UPSTREAM CR44844 DOWNSTREAM CG31820 & 2 others INTRON beat-Ic
3L	6533942	3L_6533942_SNP [dm3] 3L_6540842_SNP [dm6]	G	A	3.440e^-4	0.939	INTRON sfl
2L	20944347	2L_20944347_SNP [dm3] 2L_20944347_SNP [dm6]	A	G	3.441e^-4	0.939	INTERGENIC
X	14945775	X_14945775_SNP [dm3] X_15051742_SNP [dm6]	G	C	3.443e^-4	0.939	UTR_3_PRIME CG5541 INTRON hiw
X	6127575	X_6127575_SNP [dm3] X_6233542_SNP [dm6]	A	G	3.445e^-4	0.939	UTR_3_PRIME CG14446 DOWNSTREAM CG14446
X	16558266	X_16558266_SNP [dm3] X_16664233_SNP [dm6]	C	T	3.456e^-4	0.939	NON_SYNONYMOUS_CODING CG15865 INTRON r
X	20424427	X_20424427_SNP [dm3] X_20553400_SNP [dm6]	A	G	3.461e^-4	0.939	INTRON RunxB
X	18645749	X_18645749_SNP [dm3] X_18751716_SNP [dm6]	C	A	3.467e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7106311	2L_7106311_SNP [dm3] 2L_7106311_SNP [dm6]	A	T	3.472e^-4	0.939	INTRON Pvf3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	16542135	3L_16542135_SNP [dm3] 3L_16549035_SNP [dm6]	A	G	3.474e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_cad
X	1976079	X_1976079_SNP [dm3] X_2082046_SNP [dm6]	C	T	3.477e^-4	0.939	INTRON Unc-76	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	16191537	3L_16191537_DEL [dm3] 3L_16198437_DEL [dm6]	GGACTGGCAACCTGGAAAGG...	G	3.482e^-4	0.939	FRAME_SHIFT CG33687 UPSTREAM CG33688
2L	13895213	2L_13895213_SNP [dm3] 2L_13895213_SNP [dm6]	T	C	3.485e^-4	0.939	INTRON CenG1A	TF binding site mE1_TFBS_cad
2L	3375490	2L_3375490_SNP [dm3] 2L_3375490_SNP [dm6]	T	G	3.486e^-4	0.939	UTR_5_PRIME CG15412 DOWNSTREAM CG9662	TF binding site mE1_TFBS_inv
2R	4924078	2R_4924078_SNP [dm3] 2R_9036573_SNP [dm6]	G	A	3.493e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10934037	2L_10934037_SNP [dm3] 2L_10934037_SNP [dm6]	T	A	3.494e^-4	0.939	INTRON dpr2
3R	20267222	3R_20267222_SNP [dm3] 3R_24441500_SNP [dm6]	A	T	3.496e^-4	0.939	INTRON nAChRalpha1
X	2987420	X_2987420_SNP [dm3] X_3093387_SNP [dm6]	T	A	3.500e^-4	0.939	INTRON kirre	regulatory region REDfly_CRMs
2L	4546212	2L_4546212_SNP [dm3] 2L_4546212_SNP [dm6]	G	C	3.511e^-4	0.939	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	11315149	X_11315149_SNP [dm3] X_11421116_SNP [dm6]	C	T	3.513e^-4	0.939	INTERGENIC
3R	19766141	3R_19766141_SNP [dm3] 3R_23940419_SNP [dm6]	A	T	3.519e^-4	0.939	INTRON Gdh
3R	25574920	3R_25574920_SNP [dm3] 3R_29749198_SNP [dm6]	T	C	3.527e^-4	0.939	UPSTREAM yata & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	19086224	2R_19086224_SNP [dm3] 2R_23198701_SNP [dm6]	A	T	3.528e^-4	0.939	INTRON CG34371	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17994077	3L_17994077_INS [dm3] 3L_18000977_INS [dm6]	A	AA	3.533e^-4	0.939	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	4477147	2R_4477147_SNP [dm3] 2R_8589642_SNP [dm6]	G	T	3.541e^-4	0.939	UPSTREAM CG14752 INTERGENIC	TF binding site mE1_TFBS_cad
2L	20937330	2L_20937330_DEL [dm3] 2L_20937330_DEL [dm6]	TTTTATAGTT	T	3.559e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	19365472	2L_19365472_SNP [dm3] 2L_19365472_SNP [dm6]	G	T	3.564e^-4	0.939	DOWNSTREAM CG13086 INTERGENIC
3L	19117904	3L_19117904_SNP [dm3] 3L_19124804_SNP [dm6]	T	A	3.574e^-4	0.939	INTRON CG14082
2L	12310035	2L_12310035_SNP [dm3] 2L_12310035_SNP [dm6]	C	A	3.579e^-4	0.939	INTRON aret	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13417661	3R_13417661_SNP [dm3] 3R_17591939_SNP [dm6]	A	T	3.582e^-4	0.939	INTERGENIC
3R	8568404	3R_8568404_SNP [dm3] 3R_12742682_SNP [dm6]	T	C	3.584e^-4	0.939	SYNONYMOUS_CODING CG5999
2L	16730074	2L_16730074_SNP [dm3] 2L_16730074_SNP [dm6]	T	C	3.584e^-4	0.939	SYNONYMOUS_CODING CG31812 UPSTREAM CR43671 DOWNSTREAM CG17996	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2R	14764092	2R_14764092_SNP [dm3] 2R_18876587_SNP [dm6]	G	T	3.586e^-4	0.939	INTERGENIC
2L	13674442	2L_13674442_SNP [dm3] 2L_13674442_SNP [dm6]	G	A	3.588e^-4	0.939	INTERGENIC
2R	10263458	2R_10263458_SNP [dm3] 2R_14375953_SNP [dm6]	A	G	3.592e^-4	0.939	UPSTREAM Obp50e INTRON CG30075
2L	18003146	2L_18003146_SNP [dm3] 2L_18003146_SNP [dm6]	C	G	3.598e^-4	0.939	UPSTREAM CR44605 DOWNSTREAM CR44604 INTERGENIC
2L	21327362	2L_21327362_SNP [dm3] 2L_21327362_SNP [dm6]	T	G	3.602e^-4	0.939	DOWNSTREAM CR42696 INTERGENIC
2L	17859777	2L_17859777_SNP [dm3] 2L_17859777_SNP [dm6]	A	T	3.606e^-4	0.939	INTRON CadN2
2L	13995754	2L_13995754_SNP [dm3] 2L_13995754_SNP [dm6]	G	A	3.608e^-4	0.939	INTRON rk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3821654	X_3821654_SNP [dm3] X_3927621_SNP [dm6]	C	T	3.614e^-4	0.939	INTRON CG42541
X	14937584	X_14937584_SNP [dm3] X_15043551_SNP [dm6]	G	C	3.620e^-4	0.939	UPSTREAM CG5541 INTRON hiw	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	17529251	2L_17529251_SNP [dm3] 2L_17529251_SNP [dm6]	C	T	3.628e^-4	0.939	UPSTREAM CG15144 DOWNSTREAM CG15145 INTERGENIC
X	20707452	X_20707452_SNP [dm3] X_20836425_SNP [dm6]	G	A	3.632e^-4	0.939	INTRON shakB
X	18320006	X_18320006_SNP [dm3] X_18425973_SNP [dm6]	C	T	3.637e^-4	0.939	INTRON CG42323
2L	16097503	2L_16097503_SNP [dm3] 2L_16097503_SNP [dm6]	A	C	3.646e^-4	0.939	INTERGENIC
3L	3562034	3L_3562034_SNP [dm3] 3L_3562034_SNP [dm6]	A	G	3.662e^-4	0.939	INTRON Eip63E
2R	1024450	2R_1024450_SNP [dm3] 2R_5136945_SNP [dm6]	A	C	3.665e^-4	0.939	INTERGENIC	transposable element FlyBase
2L	16500619	2L_16500619_SNP [dm3] 2L_16500619_SNP [dm6]	T	A	3.670e^-4	0.939	INTRON Tpr2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3884505	2R_3884505_SNP [dm3] 2R_7997000_SNP [dm6]	T	G	3.685e^-4	0.939	INTRON Hey
3L	6549515	3L_6549515_SNP [dm3] 3L_6556415_SNP [dm6]	A	T	3.691e^-4	0.939	INTRON CG18769
2R	12273111	2R_12273111_SNP [dm3] 2R_16385606_SNP [dm6]	T	C	3.699e^-4	0.939	UTR_3_PRIME CG43187 UPSTREAM Sema-2b
3R	25068768	3R_25068768_SNP [dm3] 3R_29243046_SNP [dm6]	T	C	3.699e^-4	0.939	SYNONYMOUS_CODING CG31445
2L	6226411	2L_6226411_SNP [dm3] 2L_6226411_SNP [dm6]	A	C	3.711e^-4	0.939	SYNONYMOUS_CODING Ugt37b1
2L	5521534	2L_5521534_SNP [dm3] 2L_5521534_SNP [dm6]	T	C	3.714e^-4	0.939	SYNONYMOUS_CODING CG7371 DOWNSTREAM cl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19453685	3R_19453685_SNP [dm3] 3R_23627963_SNP [dm6]	A	T	3.714e^-4	0.939	INTRON CG31145
2L	19365491	2L_19365491_SNP [dm3] 2L_19365491_SNP [dm6]	T	C	3.715e^-4	0.939	DOWNSTREAM CG13086 INTERGENIC
2R	16868560	2R_16868560_SNP [dm3] 2R_20981055_SNP [dm6]	A	C	3.724e^-4	0.939	INTRON CG9313	TF binding site mE1_TFBS_cad
3L	5467722	3L_5467722_SNP [dm3] 3L_5474622_SNP [dm6]	T	A	3.726e^-4	0.939	INTERGENIC
2L	2743182	2L_2743182_SNP [dm3] 2L_2743182_SNP [dm6]	G	A	3.731e^-4	0.939	UTR_3_PRIME Hrs DOWNSTREAM CG9961	TF binding site mE1_TFBS_cad
X	20722871	X_20722871_SNP [dm3] X_20851844_SNP [dm6]	G	T	3.731e^-4	0.939	INTRON shakB
2L	9282081	2L_9282081_SNP [dm3] 2L_9282081_SNP [dm6]	T	C	3.732e^-4	0.939	INTRON Ggamma30A
X	14938553	X_14938553_SNP [dm3] X_15044520_SNP [dm6]	A	T	3.733e^-4	0.939	INTRON hiw & 1 other
X	14922990	X_14922990_INS [dm3] X_15028957_INS [dm6]	T	TGACTTG	3.736e^-4	0.939	INTRON hiw & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	3432605	2L_3432605_SNP [dm3] 2L_3432605_SNP [dm6]	T	A	3.743e^-4	0.939	INTERGENIC
3L	732095	3L_732095_SNP [dm3] 3L_732095_SNP [dm6]	A	G	3.749e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	12969465	2R_12969465_SNP [dm3] 2R_17081960_SNP [dm6]	A	T	3.752e^-4	0.939	INTRON CG30460
3R	25988915	3R_25988915_SNP [dm3] 3R_30163193_SNP [dm6]	C	T	3.760e^-4	0.939	INTERGENIC
X	6322119	X_6322119_SNP [dm3] X_6428086_SNP [dm6]	T	G	3.769e^-4	0.939	INTRON CG42340
3R	24654909	3R_24654909_SNP [dm3] 3R_28829187_SNP [dm6]	C	T	3.771e^-4	0.939	INTRON WASp
3L	4642836	3L_4642836_SNP [dm3] 3L_4642836_SNP [dm6]	A	C	3.780e^-4	0.939	INTRON axo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18758454	2R_18758454_SNP [dm3] 2R_22870931_SNP [dm6]	G	A	3.784e^-4	0.939	UPSTREAM CG13532 DOWNSTREAM fd59A INTERGENIC	TF binding site mE1_TFBS_cad
3R	2982335	3R_2982335_SNP [dm3] 3R_7156613_SNP [dm6]	C	T	3.785e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	14265267	2L_14265267_SNP [dm3] 2L_14265267_SNP [dm6]	G	A	3.796e^-4	0.939	INTRON wb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
X	14942795	X_14942795_SNP [dm3] X_15048762_SNP [dm6]	C	T	3.799e^-4	0.939	UPSTREAM CG5541 INTRON hiw & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	11272410	3L_11272410_SNP [dm3] 3L_11279310_SNP [dm6]	T	C	3.800e^-4	0.939	INTERGENIC
2L	2996381	2L_2996381_SNP [dm3] 2L_2996381_SNP [dm6]	T	C	3.802e^-4	0.939	SYNONYMOUS_CODING CG3558
X	6322120	X_6322120_DEL [dm3] X_6428087_DEL [dm6]	AT	A	3.804e^-4	0.939	INTRON CG42340
2R	11600261	2R_11600261_DEL [dm3] 2R_15712756_DEL [dm6]	AATCAAGTATTATTATCGAA...	A	3.804e^-4	0.939	UPSTREAM CG30083 INTERGENIC
2L	1869543	2L_1869543_SNP [dm3] 2L_1869543_SNP [dm6]	C	T	3.806e^-4	0.939	UPSTREAM CG7295 INTRON CG31663
3R	23625839	3R_23625839_SNP [dm3] 3R_27800117_SNP [dm6]	G	T	3.817e^-4	0.939	INTRON CG34353
2R	19153442	2R_19153442_SNP [dm3] 2R_23265919_SNP [dm6]	T	A	3.817e^-4	0.939	UPSTREAM CG12782 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	3822826	X_3822826_SNP [dm3] X_3928793_SNP [dm6]	T	G	3.827e^-4	0.939	INTRON CG42541
3L	16899578	3L_16899578_SNP [dm3] 3L_16906478_SNP [dm6]	A	C	3.833e^-4	0.939	NON_SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15204243	2L_15204243_DEL [dm3] 2L_15204243_DEL [dm6]	TGTAACACTTCTCCGTTTAT...	T	3.842e^-4	0.939	DOWNSTREAM CR43357 INTERGENIC
3L	1176396	3L_1176396_SNP [dm3] 3L_1176396_SNP [dm6]	T	G	3.853e^-4	0.939	INTRON bab2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	12661164	3L_12661164_SNP [dm3] 3L_12668064_SNP [dm6]	C	G	3.856e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18607030	3L_18607030_DEL [dm3] 3L_18613930_DEL [dm6]	ATA	A	3.861e^-4	0.939	UTR_3_PRIME CG32199 INTRON CG4174 & 1 other
X	14937990	X_14937990_SNP [dm3] X_15043957_SNP [dm6]	A	G	3.868e^-4	0.939	UPSTREAM CG5541 INTRON hiw	TF binding site mE1_TFBS_Trl
3R	22270984	3R_22270984_SNP [dm3] 3R_26445262_SNP [dm6]	A	G	3.878e^-4	0.939	INTRON tx
2R	17969401	2R_17969401_SNP [dm3] 2R_22081896_SNP [dm6]	T	C	3.882e^-4	0.939	SYNONYMOUS_CODING Synj	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	18003274	2L_18003274_SNP [dm3] 2L_18003274_SNP [dm6]	T	A	3.892e^-4	0.939	UPSTREAM CR44605 DOWNSTREAM CR44604 INTERGENIC
2L	22557650	2L_22557650_SNP [dm3] 2L_22664918_SNP [dm6]	A	G	3.897e^-4	0.939	INTRON CG40006
2L	19399723	2L_19399723_SNP [dm3] 2L_19399723_SNP [dm6]	C	T	3.897e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
3R	19453689	3R_19453689_SNP [dm3] 3R_23627967_SNP [dm6]	A	T	3.898e^-4	0.939	INTRON CG31145
X	14365289	X_14365289_SNP [dm3] X_14471256_SNP [dm6]	G	C	3.917e^-4	0.939	INTERGENIC
3R	8588455	3R_8588455_SNP [dm3] 3R_12762733_SNP [dm6]	A	T	3.929e^-4	0.939	INTRON beat-Vc
3L	18696352	3L_18696352_SNP [dm3] 3L_18703252_SNP [dm6]	G	A	3.942e^-4	0.939	INTERGENIC
3R	20063617	3R_20063617_SNP [dm3] 3R_24237895_SNP [dm6]	G	T	3.947e^-4	0.939	SYNONYMOUS_CODING mask DOWNSTREAM scaRNA:MeU2-G25	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	10506313	3L_10506313_SNP [dm3] 3L_10513213_SNP [dm6]	G	A	3.951e^-4	0.939	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi
2L	14607334	2L_14607334_SNP [dm3] 2L_14607334_SNP [dm6]	C	A	3.954e^-4	0.939	INTRON osp
2R	11219262	2R_11219262_SNP [dm3] 2R_15331757_SNP [dm6]	A	G	3.955e^-4	0.939	UPSTREAM CR44371 INTRON Hr51
3L	6754829	3L_6754829_SNP [dm3] 3L_6761729_SNP [dm6]	A	T	3.965e^-4	0.939	UPSTREAM CG32392 INTRON CG32392
2R	11600318	2R_11600318_SNP [dm3] 2R_15712813_SNP [dm6]	C	A	3.965e^-4	0.939	UPSTREAM CG30083 INTERGENIC
3L	12526313	3L_12526313_SNP [dm3] 3L_12533213_SNP [dm6]	A	G	3.969e^-4	0.939	SYNONYMOUS_CODING Tsf2 UPSTREAM CG34242	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	13237061	2L_13237061_SNP [dm3] 2L_13237061_SNP [dm6]	C	A	3.973e^-4	0.939	INTRON CG5867
X	15446159	X_15446159_SNP [dm3] X_15552126_SNP [dm6]	C	T	3.973e^-4	0.939	INTRON Ac13E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	13874785	X_13874785_SNP [dm3] X_13980752_SNP [dm6]	T	C	3.976e^-4	0.939	INTRON mamo
3L	16395384	3L_16395384_DEL [dm3] 3L_16402284_DEL [dm6]	ATGTA	A	3.980e^-4	0.939	DOWNSTREAM fax INTERGENIC
2L	3410488	2L_3410488_SNP [dm3] 2L_3410488_SNP [dm6]	T	G	3.984e^-4	0.939	UPSTREAM CG8840 INTRON pgant2
2L	16223974	2L_16223974_SNP [dm3] 2L_16223974_SNP [dm6]	T	C	3.985e^-4	0.939	INTERGENIC
2L	19839585	2L_19839585_SNP [dm3] 2L_19839585_SNP [dm6]	T	A	4.001e^-4	0.939	INTRON sick	TF binding site mE1_TFBS_HSA
2L	4370787	2L_4370787_SNP [dm3] 2L_4370787_SNP [dm6]	C	G	4.009e^-4	0.939	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	4723571	2L_4723571_SNP [dm3] 2L_4723571_SNP [dm6]	A	T	4.010e^-4	0.939	INTERGENIC
3L	16121131	3L_16121131_SNP [dm3] 3L_16128031_SNP [dm6]	A	G	4.011e^-4	0.939	INTRON Pgm	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
3R	24983171	3R_24983171_SNP [dm3] 3R_29157449_SNP [dm6]	T	C	4.013e^-4	0.939	UPSTREAM CG11897 DOWNSTREAM Rpn2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3R	13381608	3R_13381608_SNP [dm3] 3R_17555886_SNP [dm6]	C	A	4.019e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	5401342	2L_5401342_SNP [dm3] 2L_5401342_SNP [dm6]	T	C	4.020e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	837708	3L_837708_SNP [dm3] 3L_837708_SNP [dm6]	T	C	4.034e^-4	0.939	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2L	21345635	2L_21345635_SNP [dm3] 2L_21345635_SNP [dm6]	A	T	4.041e^-4	0.939	INTRON Tsp39D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2444431	2R_2444431_SNP [dm3] 2R_6556926_SNP [dm6]	C	T	4.046e^-4	0.939	INTRON jing	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	4085201	3L_4085201_SNP [dm3] 3L_4085201_SNP [dm6]	G	T	4.049e^-4	0.939	INTRON Gad1
2R	14750203	2R_14750203_SNP [dm3] 2R_18862698_SNP [dm6]	C	G	4.064e^-4	0.939	UPSTREAM CG43069 & 1 other INTERGENIC
3R	6306022	3R_6306022_SNP [dm3] 3R_10480300_SNP [dm6]	A	T	4.067e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	12828596	2R_12828596_SNP [dm3] 2R_16941091_SNP [dm6]	T	G	4.070e^-4	0.939	INTRON Pkc53E
2R	19153204	2R_19153204_SNP [dm3] 2R_23265681_SNP [dm6]	C	G	4.074e^-4	0.939	UPSTREAM CG12782 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	6105521	2L_6105521_SNP [dm3] 2L_6105521_SNP [dm6]	T	A	4.079e^-4	0.939	INTRON stai
2L	9118913	2L_9118913_SNP [dm3] 2L_9118913_SNP [dm6]	A	G	4.084e^-4	0.939	UPSTREAM CR44617 INTERGENIC
2L	2741567	2L_2741567_SNP [dm3] 2L_2741567_SNP [dm6]	T	C	4.088e^-4	0.939	SYNONYMOUS_CODING Hrs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14403715	3R_14403715_SNP [dm3] 3R_18577993_SNP [dm6]	A	G	4.099e^-4	0.939	INTRON fray & 1 other
3R	1081269	3R_1081269_SNP [dm3] 3R_5255547_SNP [dm6]	T	A	4.099e^-4	0.939	NON_SYNONYMOUS_CODING CG12173 DOWNSTREAM CG1113
2R	6154006	2R_6154006_SNP [dm3] 2R_10266501_SNP [dm6]	T	C	4.104e^-4	0.939	UTR_5_PRIME CG12910 UPSTREAM CG12910 INTRON CG12910
3L	14159249	3L_14159249_SNP [dm3] 3L_14166149_SNP [dm6]	C	A	4.105e^-4	0.939	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13410735	3R_13410735_SNP [dm3] 3R_17585013_SNP [dm6]	A	C	4.111e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_inv
3R	25574955	3R_25574955_SNP [dm3] 3R_29749233_SNP [dm6]	C	T	4.124e^-4	0.939	UTR_5_PRIME yata UPSTREAM ATPsyn-gamma	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12108869	3L_12108869_INS [dm3] 3L_12115769_INS [dm6]	C	CC	4.126e^-4	0.939	UPSTREAM l_3_j2D3 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	10173782	3R_10173782_SNP [dm3] 3R_14348060_SNP [dm6]	T	A	4.129e^-4	0.939	INTRON NK7.1
2R	20408442	2R_20408442_SNP [dm3] 2R_24520919_SNP [dm6]	T	C	4.143e^-4	0.939	SYNONYMOUS_CODING Ir60d UPSTREAM Ir60f DOWNSTREAM CG4612	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10534584	3L_10534584_SNP [dm3] 3L_10541484_SNP [dm6]	G	T	4.149e^-4	0.939	INTRON A2bp1
3L	16231750	3L_16231750_SNP [dm3] 3L_16238650_SNP [dm6]	T	G	4.158e^-4	0.939	NON_SYNONYMOUS_CODING l_3_72Dr	TF binding site mE1_TFBS_cad
2L	6226534	2L_6226534_SNP [dm3] 2L_6226534_SNP [dm6]	A	C	4.160e^-4	0.939	SYNONYMOUS_CODING Ugt37b1
2R	14908030	2R_14908030_SNP [dm3] 2R_19020525_SNP [dm6]	G	A	4.165e^-4	0.939	INTERGENIC
3R	12369229	3R_12369229_SNP [dm3] 3R_16543507_SNP [dm6]	G	C	4.174e^-4	0.939	INTRON CG42342
3R	22693070	3R_22693070_SNP [dm3] 3R_26867348_SNP [dm6]	C	T	4.176e^-4	0.939	UPSTREAM ball INTRON His2Av	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_ttk
2L	8806062	2L_8806062_SNP [dm3] 2L_8806062_SNP [dm6]	C	T	4.178e^-4	0.939	INTERGENIC
3R	1975350	3R_1975350_SNP [dm3] 3R_6149628_SNP [dm6]	T	C	4.200e^-4	0.939	DOWNSTREAM CG31559 INTERGENIC	TF binding site mE1_TFBS_ttk
X	12779901	X_12779901_SNP [dm3] X_12885868_SNP [dm6]	G	A	4.201e^-4	0.939	INTRON Pde9
X	13844759	X_13844759_SNP [dm3] X_13950726_SNP [dm6]	C	A	4.207e^-4	0.939	INTRON mamo
3L	9656684	3L_9656684_SNP [dm3] 3L_9663584_SNP [dm6]	T	G	4.210e^-4	0.939	INTRON fry	TF binding site mE1_TFBS_cad
2L	16729978	2L_16729978_SNP [dm3] 2L_16729978_SNP [dm6]	A	G	4.215e^-4	0.939	SYNONYMOUS_CODING CG31812 UPSTREAM CR43671 DOWNSTREAM CG17996	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2R	7131645	2R_7131645_SNP [dm3] 2R_11244140_SNP [dm6]	T	A	4.224e^-4	0.939	UPSTREAM CG13226 INTERGENIC	TF binding site mE1_TFBS_cad
3R	13451236	3R_13451236_SNP [dm3] 3R_17625514_SNP [dm6]	T	C	4.256e^-4	0.939	UPSTREAM tRNA:T:90Ca & 1 other INTRON AttD
2R	11952145	2R_11952145_DEL [dm3] 2R_16064640_DEL [dm6]	TAC	T	4.264e^-4	0.939	DOWNSTREAM mir-137 INTERGENIC
3L	1196905	3L_1196905_SNP [dm3] 3L_1196905_SNP [dm6]	G	T	4.264e^-4	0.939	INTRON Aplip1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	18387280	X_18387280_SNP [dm3] X_18493247_SNP [dm6]	G	A	4.273e^-4	0.939	UTR_3_PRIME CG15043 DOWNSTREAM CG15043
2R	870085	2R_870085_INS [dm3] 2R_4982580_INS [dm6]	G	GAGAAG	4.273e^-4	0.939	INTRON Ir41a	TF binding site mE1_TFBS_cad transposable element FlyBase
2R	870093	2R_870093_DEL [dm3] 2R_4982588_DEL [dm6]	CCC	G	4.273e^-4	0.939	INTRON Ir41a	TF binding site mE1_TFBS_cad transposable element FlyBase
3L	8248597	3L_8248597_SNP [dm3] 3L_8255497_SNP [dm6]	G	A	4.277e^-4	0.939	INTRON Dscam4
2L	21148426	2L_21148426_SNP [dm3] 2L_21148426_SNP [dm6]	G	C	4.277e^-4	0.939	UTR_5_PRIME del UPSTREAM del	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	12095884	X_12095884_SNP [dm3] X_12201851_SNP [dm6]	A	T	4.283e^-4	0.939	INTRON Ten-a
3R	18489013	3R_18489013_SNP [dm3] 3R_22663291_SNP [dm6]	C	T	4.283e^-4	0.939	INTRON CG45058
3L	14517395	3L_14517395_SNP [dm3] 3L_14524295_SNP [dm6]	A	C	4.284e^-4	0.939	INTRON bbg
3L	18601316	3L_18601316_SNP [dm3] 3L_18608216_SNP [dm6]	G	T	4.287e^-4	0.939	SYNONYMOUS_CODING CG18231 DOWNSTREAM CG18233 INTRON CG4174 & 1 other
3L	17924555	3L_17924555_SNP [dm3] 3L_17931455_SNP [dm6]	C	T	4.302e^-4	0.939	INTERGENIC
3R	13948354	3R_13948354_SNP [dm3] 3R_18122632_SNP [dm6]	A	G	4.303e^-4	0.939	INTRON sr	TF binding site BDTNP1_TFBS_Med mE1_TFBS_Trl
2L	13923232	2L_13923232_SNP [dm3] 2L_13923232_SNP [dm6]	A	C	4.321e^-4	0.939	INTRON Ance-3 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12233587	2R_12233587_SNP [dm3] 2R_16346082_SNP [dm6]	T	C	4.323e^-4	0.939	SYNONYMOUS_CODING wcd DOWNSTREAM Nup62	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	3209723	2R_3209723_SNP [dm3] 2R_7322218_SNP [dm6]	T	G	4.327e^-4	0.939	INTRON Dscam1
2L	2742326	2L_2742326_SNP [dm3] 2L_2742326_SNP [dm6]	G	A	4.342e^-4	0.939	SYNONYMOUS_CODING Hrs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6141507	2L_6141507_SNP [dm3] 2L_6141507_SNP [dm6]	G	A	4.346e^-4	0.939	SYNONYMOUS_CODING CG13991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16504700	3R_16504700_DEL [dm3] 3R_20678978_DEL [dm6]	GGAT	G	4.347e^-4	0.939	EXON CR43452
3R	16504706	3R_16504706_DEL [dm3] 3R_20678984_DEL [dm6]	GCC	G	4.347e^-4	0.939	EXON CR43452
4	1164580	4_1164580_SNP [dm3] 4_1143954_SNP [dm6]	C	T	4.353e^-4	0.939	INTRON CG32017
3R	14322126	3R_14322126_SNP [dm3] 3R_18496404_SNP [dm6]	T	C	4.354e^-4	0.939	INTRON fru
3L	10894708	3L_10894708_SNP [dm3] 3L_10901608_SNP [dm6]	A	C	4.356e^-4	0.939	INTERGENIC
2L	2748852	2L_2748852_SNP [dm3] 2L_2748852_SNP [dm6]	C	T	4.361e^-4	0.939	UPSTREAM Pgk INTRON Pgk	TF binding site mE1_TFBS_HSA
3R	4144658	3R_4144658_DEL [dm3] 3R_8318936_DEL [dm6]	TT	T	4.362e^-4	0.939	UTR_3_PRIME Ctr1B DOWNSTREAM CR45215 & 1 other
X	3813214	X_3813214_SNP [dm3] X_3919181_SNP [dm6]	C	A	4.363e^-4	0.939	INTRON CG42541
3L	16095417	3L_16095417_SNP [dm3] 3L_16102317_SNP [dm6]	A	G	4.372e^-4	0.939	SPLICE_SITE_REGION CG5414 INTRON CG5414
3R	21754809	3R_21754809_SNP [dm3] 3R_25929087_SNP [dm6]	A	G	4.376e^-4	0.939	INTRON CCAP-R
3L	21779367	3L_21779367_SNP [dm3] 3L_21786267_SNP [dm6]	A	G	4.378e^-4	0.939	INTERGENIC
3R	13410736	3R_13410736_SNP [dm3] 3R_17585014_SNP [dm6]	T	C	4.385e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_inv
2R	20347080	2R_20347080_SNP [dm3] 2R_24459557_SNP [dm6]	G	C	4.404e^-4	0.939	INTRON CG13579
3R	16692565	3R_16692565_SNP [dm3] 3R_20866843_SNP [dm6]	G	T	4.407e^-4	0.939	UPSTREAM CG3822 INTERGENIC
2L	16242063	2L_16242063_SNP [dm3] 2L_16242063_SNP [dm6]	C	T	4.411e^-4	0.939	UTR_5_PRIME CG42818 DOWNSTREAM CG42817
3L	19044761	3L_19044761_SNP [dm3] 3L_19051661_SNP [dm6]	C	A	4.424e^-4	0.939	NON_SYNONYMOUS_CODING Acp76A UPSTREAM CR44675	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11439788	2R_11439788_SNP [dm3] 2R_15552283_SNP [dm6]	T	C	4.432e^-4	0.939	INTERGENIC
2R	4475437	2R_4475437_SNP [dm3] 2R_8587932_SNP [dm6]	A	C	4.435e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_cad
2R	19111486	2R_19111486_SNP [dm3] 2R_23223963_SNP [dm6]	T	C	4.441e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2R	11952050	2R_11952050_SNP [dm3] 2R_16064545_SNP [dm6]	A	C	4.443e^-4	0.939	DOWNSTREAM mir-137 INTERGENIC
3L	22760723	3L_22760723_SNP [dm3] 3L_22767623_SNP [dm6]	G	C	4.452e^-4	0.939	INTRON SPoCk
2L	19395282	2L_19395282_SNP [dm3] 2L_19395282_SNP [dm6]	C	A	4.459e^-4	0.939	INTRON CG17544 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8744223	2L_8744223_SNP [dm3] 2L_8744223_SNP [dm6]	T	C	4.462e^-4	0.939	INTERGENIC
2R	15059368	2R_15059368_SNP [dm3] 2R_19171863_SNP [dm6]	T	A	4.462e^-4	0.939	INTRON CG10737
2L	22557642	2L_22557642_SNP [dm3] 2L_22664910_SNP [dm6]	A	G	4.462e^-4	0.939	INTRON CG40006
X	3813021	X_3813021_SNP [dm3] X_3918988_SNP [dm6]	G	C	4.476e^-4	0.939	INTRON CG42541
X	1977572	X_1977572_SNP [dm3] X_2083539_SNP [dm6]	A	G	4.479e^-4	0.939	INTRON Unc-76	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
X	20852656	X_20852656_SNP [dm3] X_20981629_SNP [dm6]	C	A	4.480e^-4	0.939	INTERGENIC
3R	5227865	3R_5227865_SNP [dm3] 3R_9402143_SNP [dm6]	C	T	4.482e^-4	0.939	SYNONYMOUS_CODING CG8132 UPSTREAM RpL34b DOWNSTREAM CG9356	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17159958	2R_17159958_SNP [dm3] 2R_21272453_SNP [dm6]	A	T	4.483e^-4	0.939	INTRON Rgk3
2L	5513802	2L_5513802_INS [dm3] 2L_5513802_INS [dm6]	A	AA	4.483e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
2L	4211957	2L_4211957_SNP [dm3] 2L_4211957_SNP [dm6]	C	A	4.485e^-4	0.939	INTRON ft
2L	16173297	2L_16173297_SNP [dm3] 2L_16173297_SNP [dm6]	T	C	4.488e^-4	0.939	INTRON Ca-alpha1D	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	17634312	2L_17634312_SNP [dm3] 2L_17634312_SNP [dm6]	A	T	4.493e^-4	0.939	INTERGENIC
2L	18467509	2L_18467509_SNP [dm3] 2L_18467509_SNP [dm6]	C	T	4.502e^-4	0.939	INTRON let-7-C
3R	18903408	3R_18903408_SNP [dm3] 3R_23077686_SNP [dm6]	T	A	4.503e^-4	0.939	INTRON CG13830
2R	20209481	2R_20209481_SNP [dm3] 2R_24321958_SNP [dm6]	A	C	4.505e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9509096	3L_9509096_SNP [dm3] 3L_9515996_SNP [dm6]	T	G	4.505e^-4	0.939	INTRON CG33700
3L	3882346	3L_3882346_SNP [dm3] 3L_3882346_SNP [dm6]	G	T	4.507e^-4	0.939	INTERGENIC
2L	16500633	2L_16500633_SNP [dm3] 2L_16500633_SNP [dm6]	C	T	4.515e^-4	0.939	INTRON Tpr2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17956797	2R_17956797_SNP [dm3] 2R_22069292_SNP [dm6]	T	C	4.524e^-4	0.939	SYNONYMOUS_CODING Snp DOWNSTREAM CG44249 & 1 other
X	9568496	X_9568496_SNP [dm3] X_9674463_SNP [dm6]	A	T	4.525e^-4	0.939	INTRON nej	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	21056004	2L_21056004_SNP [dm3] 2L_21056004_SNP [dm6]	A	C	4.529e^-4	0.939	SPLICE_SITE_REGION Itgbetanu INTRON Itgbetanu
2L	14398735	2L_14398735_SNP [dm3] 2L_14398735_SNP [dm6]	T	C	4.538e^-4	0.939	INTRON elB
X	8910395	X_8910395_SNP [dm3] X_9016362_SNP [dm6]	C	T	4.550e^-4	0.939	INTRON CR43836 & 1 other
2L	8249218	2L_8249218_SNP [dm3] 2L_8249218_SNP [dm6]	G	T	4.551e^-4	0.939	SYNONYMOUS_CODING CG8086 INTRON CG8086
2R	2726653	2R_2726653_SNP [dm3] 2R_6839148_SNP [dm6]	T	A	4.552e^-4	0.939	UPSTREAM CG9445 DOWNSTREAM CG15236 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	6491874	3R_6491874_SNP [dm3] 3R_10666152_SNP [dm6]	G	C	4.555e^-4	0.939	INTERGENIC
X	17378546	X_17378546_SNP [dm3] X_17484513_SNP [dm6]	C	T	4.555e^-4	0.939	INTRON CG43658	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	12934940	3R_12934940_SNP [dm3] 3R_17109218_SNP [dm6]	A	T	4.561e^-4	0.939	INTRON cher
2L	5436365	2L_5436365_SNP [dm3] 2L_5436365_SNP [dm6]	A	G	4.566e^-4	0.939	EXON CR31647
X	12875938	X_12875938_SNP [dm3] X_12981905_SNP [dm6]	G	A	4.580e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	17863769	2L_17863769_SNP [dm3] 2L_17863769_SNP [dm6]	G	C	4.581e^-4	0.939	INTRON CadN2
3L	18452347	3L_18452347_SNP [dm3] 3L_18459247_SNP [dm6]	C	G	4.586e^-4	0.939	DOWNSTREAM CG32196 INTERGENIC
2R	12357361	2R_12357361_SNP [dm3] 2R_16469856_SNP [dm6]	G	A	4.587e^-4	0.939	DOWNSTREAM CheB53b INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	17613428	3R_17613428_SNP [dm3] 3R_21787706_SNP [dm6]	G	A	4.589e^-4	0.939	INTRON CASK
3L	15347150	3L_15347150_SNP [dm3] 3L_15354050_SNP [dm6]	A	T	4.593e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12553304	3R_12553304_SNP [dm3] 3R_16727582_SNP [dm6]	T	G	4.597e^-4	0.939	INTRON Ubx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	14663564	X_14663564_SNP [dm3] X_14769531_SNP [dm6]	A	G	4.599e^-4	0.939	INTERGENIC
3R	19117205	3R_19117205_SNP [dm3] 3R_23291483_SNP [dm6]	G	T	4.600e^-4	0.939	INTRON pnt
2L	17612033	2L_17612033_SNP [dm3] 2L_17612033_SNP [dm6]	A	T	4.608e^-4	0.939	INTERGENIC
3L	6067257	3L_6067257_SNP [dm3] 3L_6074157_SNP [dm6]	T	G	4.612e^-4	0.939	SYNONYMOUS_CODING CG13295 DOWNSTREAM CG6602	TF binding site mE1_TFBS_sens
3R	22768872	3R_22768872_SNP [dm3] 3R_26943150_SNP [dm6]	T	C	4.612e^-4	0.939	SYNONYMOUS_CODING sda	TF binding site mE1_TFBS_cad
2L	5138793	2L_5138793_SNP [dm3] 2L_5138793_SNP [dm6]	G	A	4.622e^-4	0.939	SYNONYMOUS_CODING Msp300 INTRON Msp300
3L	13204727	3L_13204727_SNP [dm3] 3L_13211627_SNP [dm6]	A	G	4.625e^-4	0.939	UPSTREAM tRNA:CR32126 DOWNSTREAM tRNA:CR32129 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19786663	X_19786663_SNP [dm3] X_19892630_SNP [dm6]	A	T	4.625e^-4	0.939	INTRON Hers
2R	18423661	2R_18423661_SNP [dm3] 2R_22536156_SNP [dm6]	T	C	4.625e^-4	0.939	INTRON px
3L	10108316	3L_10108316_SNP [dm3] 3L_10115216_SNP [dm6]	G	T	4.635e^-4	0.939	INTRON dpr6
X	12853071	X_12853071_SNP [dm3] X_12959038_SNP [dm6]	G	T	4.635e^-4	0.939	UPSTREAM CG32642 INTERGENIC
2L	13237005	2L_13237005_INS [dm3] 2L_13237005_INS [dm6]	A	ATCTCTAAAAGTTA...	4.669e^-4	0.939	INTRON CG5867
2L	19987220	2L_19987220_SNP [dm3] 2L_19987220_SNP [dm6]	T	G	4.670e^-4	0.939	INTRON CG43861
3R	4964424	3R_4964424_SNP [dm3] 3R_9138702_SNP [dm6]	C	T	4.682e^-4	0.939	INTRON pum
X	9568486	X_9568486_SNP [dm3] X_9674453_SNP [dm6]	A	G	4.685e^-4	0.939	INTRON nej	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	9281511	2L_9281511_SNP [dm3] 2L_9281511_SNP [dm6]	C	A	4.686e^-4	0.939	INTRON Ggamma30A
3R	4964427	3R_4964427_SNP [dm3] 3R_9138705_SNP [dm6]	C	A	4.687e^-4	0.939	INTRON pum
3R	23242963	3R_23242963_SNP [dm3] 3R_27417241_SNP [dm6]	C	G	4.687e^-4	0.939	INTRON side
X	20334437	X_20334437_SNP [dm3] X_20463410_SNP [dm6]	G	C	4.689e^-4	0.939	SYNONYMOUS_CODING CG32506	TF binding site mE1_TFBS_chinmo
2R	20532260	2R_20532260_SNP [dm3] 2R_24644737_SNP [dm6]	G	A	4.697e^-4	0.939	INTERGENIC
2R	20532267	2R_20532267_SNP [dm3] 2R_24644744_SNP [dm6]	G	A	4.697e^-4	0.939	INTERGENIC
2L	6140712	2L_6140712_SNP [dm3] 2L_6140712_SNP [dm6]	T	C	4.740e^-4	0.939	SYNONYMOUS_CODING CG13991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	909952	2R_909952_SNP [dm3] 2R_5022447_SNP [dm6]	T	C	4.742e^-4	0.939	DOWNSTREAM Ir41a INTERGENIC	transposable element FlyBase
2L	12619158	2L_12619158_SNP [dm3] 2L_12619158_SNP [dm6]	A	G	4.742e^-4	0.939	INTRON Ref2 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	17634311	2L_17634311_SNP [dm3] 2L_17634311_SNP [dm6]	A	T	4.748e^-4	0.939	INTERGENIC
X	1667488	X_1667488_INS [dm3] X_1773455_INS [dm6]	C	CATCTTCCAAC...	4.748e^-4	0.939	UPSTREAM CG42666 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx mE1_TFBS_zfh1
X	14622935	X_14622935_SNP [dm3] X_14728902_SNP [dm6]	T	G	4.752e^-4	0.939	INTRON NetB
3L	13556248	3L_13556248_SNP [dm3] 3L_13563148_SNP [dm6]	C	T	4.758e^-4	0.939	INTRON bru-3
2R	7369001	2R_7369001_SNP [dm3] 2R_11481496_SNP [dm6]	A	T	4.763e^-4	0.939	INTRON inv
2R	12821702	2R_12821702_SNP [dm3] 2R_16934197_SNP [dm6]	G	T	4.764e^-4	0.939	INTRON Pkc53E	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4642863	3L_4642863_SNP [dm3] 3L_4642863_SNP [dm6]	A	T	4.775e^-4	0.939	INTRON axo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2051002	2R_2051002_SNP [dm3] 2R_6163497_SNP [dm6]	A	C	4.776e^-4	0.939	UPSTREAM tRNA:K2:42Ac DOWNSTREAM tRNA:N5:42Aa INTRON EcR	transposable element FlyBase
3R	17613384	3R_17613384_SNP [dm3] 3R_21787662_SNP [dm6]	A	T	4.778e^-4	0.939	INTRON CASK
3R	12648666	3R_12648666_SNP [dm3] 3R_16822944_SNP [dm6]	C	T	4.779e^-4	0.939	INTRON abd-A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	16650643	2L_16650643_SNP [dm3] 2L_16650643_SNP [dm6]	G	A	4.784e^-4	0.939	INTRON CG42389
X	20715878	X_20715878_SNP [dm3] X_20844851_SNP [dm6]	A	G	4.791e^-4	0.939	INTRON shakB
3L	18548450	3L_18548450_SNP [dm3] 3L_18555350_SNP [dm6]	A	G	4.799e^-4	0.939	INTERGENIC
3L	8650770	3L_8650770_SNP [dm3] 3L_8657670_SNP [dm6]	G	A	4.800e^-4	0.939	INTERGENIC
3L	6743737	3L_6743737_SNP [dm3] 3L_6750637_SNP [dm6]	T	C	4.800e^-4	0.939	SYNONYMOUS_CODING velo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2R	1037531	2R_1037531_SNP [dm3] 2R_5150026_SNP [dm6]	C	G	4.809e^-4	0.939	INTRON Atf6
3R	14543660	3R_14543660_SNP [dm3] 3R_18717938_SNP [dm6]	A	G	4.816e^-4	0.939	UTR_3_PRIME VAChT INTRON Cha
3L	18543198	3L_18543198_SNP [dm3] 3L_18550098_SNP [dm6]	A	G	4.817e^-4	0.939	INTERGENIC
X	14946075	X_14946075_SNP [dm3] X_15052042_SNP [dm6]	A	G	4.819e^-4	0.939	DOWNSTREAM CG5541 INTRON hiw
3L	15192322	3L_15192322_SNP [dm3] 3L_15199222_SNP [dm6]	T	A	4.821e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad
2L	18376189	2L_18376189_SNP [dm3] 2L_18376189_SNP [dm6]	G	A	4.822e^-4	0.939	INTRON Fas3
3L	16191536	3L_16191536_SNP [dm3] 3L_16198436_SNP [dm6]	T	G	4.822e^-4	0.939	NON_SYNONYMOUS_CODING CG33687 UPSTREAM CG33688
2R	18512877	2R_18512877_SNP [dm3] 2R_22625372_SNP [dm6]	G	C	4.825e^-4	0.939	INTRON CG33143
2L	7118894	2L_7118894_SNP [dm3] 2L_7118894_SNP [dm6]	A	G	4.833e^-4	0.939	SYNONYMOUS_CODING Pvf3 INTRON Pvf3
3R	25576897	3R_25576897_SNP [dm3] 3R_29751175_SNP [dm6]	C	T	4.858e^-4	0.939	SYNONYMOUS_CODING yata	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7815946	2L_7815946_SNP [dm3] 2L_7815946_SNP [dm6]	G	A	4.861e^-4	0.939	SYNONYMOUS_CODING LanB1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2750175	2L_2750175_SNP [dm3] 2L_2750175_SNP [dm6]	G	C	4.863e^-4	0.939	UPSTREAM Pgk INTRON Pgk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1608271	2L_1608271_SNP [dm3] 2L_1608271_SNP [dm6]	C	T	4.865e^-4	0.939	UTR_3_PRIME haf INTRON CG31935
3L	10397146	3L_10397146_SNP [dm3] 3L_10404046_SNP [dm6]	A	G	4.866e^-4	0.939	INTERGENIC
2R	14438292	2R_14438292_SNP [dm3] 2R_18550787_SNP [dm6]	T	G	4.870e^-4	0.939	INTERGENIC
3R	14678907	3R_14678907_DEL [dm3] 3R_18853185_DEL [dm6]	CT	C	4.874e^-4	0.939	INTERGENIC
2L	19381270	2L_19381270_SNP [dm3] 2L_19381270_SNP [dm6]	G	T	4.875e^-4	0.939	INTRON CG17350
2L	6360603	2L_6360603_SNP [dm3] 2L_6360603_SNP [dm6]	C	G	4.886e^-4	0.939	UPSTREAM CR44777 EXON CR44778
2L	19404557	2L_19404557_SNP [dm3] 2L_19404557_SNP [dm6]	G	T	4.895e^-4	0.939	SYNONYMOUS_CODING Pax UTR_5_PRIME Pax UPSTREAM snmRNA:359	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26100135	3R_26100135_DEL [dm3] 3R_30274413_DEL [dm6]	TG	T	4.895e^-4	0.939	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5026474	2L_5026474_SNP [dm3] 2L_5026474_SNP [dm6]	G	T	4.897e^-4	0.939	INTRON vkg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	21623015	3R_21623015_INS [dm3] 3R_25797293_INS [dm6]	C	CTGCCGCTT	4.907e^-4	0.939	EXON CR43847
2L	18540521	2L_18540521_SNP [dm3] 2L_18540521_SNP [dm6]	C	T	4.911e^-4	0.939	INTRON Pde11
2L	18359700	2L_18359700_SNP [dm3] 2L_18359700_SNP [dm6]	C	T	4.931e^-4	0.939	UPSTREAM Acp36DE INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	16507126	X_16507126_SNP [dm3] X_16613093_SNP [dm6]	T	C	4.931e^-4	0.939	INTRON mbt
2L	14618047	2L_14618047_SNP [dm3] 2L_14618047_SNP [dm6]	C	T	4.936e^-4	0.939	DOWNSTREAM Adh INTRON osp & 2 others
X	14938009	X_14938009_SNP [dm3] X_15043976_SNP [dm6]	C	A	4.943e^-4	0.939	UPSTREAM CG5541 INTRON hiw	TF binding site mE1_TFBS_Trl
X	2541287	X_2541287_SNP [dm3] X_2647254_SNP [dm6]	T	A	4.946e^-4	0.939	INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	14442894	2R_14442894_SNP [dm3] 2R_18555389_SNP [dm6]	A	T	4.950e^-4	0.939	SYNONYMOUS_CODING GEFmeso UTR_3_PRIME GEFmeso	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	15159247	2L_15159247_DEL [dm3] 2L_15159247_DEL [dm6]	AGTGGAGGTGTACATT...	A	4.950e^-4	0.939	DOWNSTREAM CR44771 INTERGENIC
2R	15059364	2R_15059364_SNP [dm3] 2R_19171859_SNP [dm6]	G	C	4.954e^-4	0.939	INTRON CG10737
3L	16546471	3L_16546471_SNP [dm3] 3L_16553371_SNP [dm6]	G	A	4.960e^-4	0.939	INTERGENIC
2R	14981651	2R_14981651_SNP [dm3] 2R_19094146_SNP [dm6]	A	G	4.978e^-4	0.939	SYNONYMOUS_CODING 5-HT1A DOWNSTREAM Ir56a	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	19365474	2L_19365474_DEL [dm3] 2L_19365474_DEL [dm6]	ATAAGCA	G	4.983e^-4	0.939	DOWNSTREAM CG13086 INTERGENIC
3L	2516416	3L_2516416_SNP [dm3] 3L_2516416_SNP [dm6]	C	A	4.989e^-4	0.939	UPSTREAM CR45170 INTRON Spn
2L	15159267	2L_15159267_DEL [dm3] 2L_15159267_DEL [dm6]	AAAATA	CC	4.989e^-4	0.939	DOWNSTREAM CR44771 INTERGENIC
2L	7818530	2L_7818530_SNP [dm3] 2L_7818530_SNP [dm6]	C	A	4.992e^-4	0.939	SYNONYMOUS_CODING LanB1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	932163	2R_932163_INS [dm3] 2R_5044658_INS [dm6]	C	CTTTTC	4.994e^-4	0.939	INTERGENIC
2L	5780331	2L_5780331_SNP [dm3] 2L_5780331_SNP [dm6]	G	A	5.007e^-4	0.939	INTRON CG9171	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	5445535	3L_5445535_SNP [dm3] 3L_5452435_SNP [dm6]	T	A	5.009e^-4	0.939	INTERGENIC
3L	7303464	3L_7303464_SNP [dm3] 3L_7310364_SNP [dm6]	A	T	5.013e^-4	0.939	INTRON unc-13-4A
3R	11764586	3R_11764586_SNP [dm3] 3R_15938864_SNP [dm6]	A	T	5.014e^-4	0.939	INTRON Sap47
3R	23139351	3R_23139351_SNP [dm3] 3R_27313629_SNP [dm6]	A	T	5.016e^-4	0.939	INTRON CG3339	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20318502	3L_20318502_SNP [dm3] 3L_20325402_SNP [dm6]	C	T	5.018e^-4	0.939	INTERGENIC	transposable element FlyBase
2L	6497489	2L_6497489_SNP [dm3] 2L_6497489_SNP [dm6]	C	T	5.025e^-4	0.939	NON_SYNONYMOUS_CODING CG9550 DOWNSTREAM CG31638
2R	11437783	2R_11437783_SNP [dm3] 2R_15550278_SNP [dm6]	T	A	5.025e^-4	0.939	UPSTREAM CG8192 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
3R	25201502	3R_25201502_SNP [dm3] 3R_29375780_SNP [dm6]	T	G	5.029e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	11511608	3L_11511608_SNP [dm3] 3L_11518508_SNP [dm6]	T	C	5.040e^-4	0.939	SYNONYMOUS_CODING CG7512 DOWNSTREAM Fuca	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15960875	2R_15960875_SNP [dm3] 2R_20073370_SNP [dm6]	C	G	5.055e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14700123	3R_14700123_INS [dm3] 3R_18874401_INS [dm6]	C	TT	5.056e^-4	0.939	INTERGENIC
X	15446455	X_15446455_SNP [dm3] X_15552422_SNP [dm6]	A	T	5.057e^-4	0.939	INTRON Ac13E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	3819260	X_3819260_SNP [dm3] X_3925227_SNP [dm6]	C	A	5.057e^-4	0.939	INTRON CG42541
3R	10505867	3R_10505867_SNP [dm3] 3R_14680145_SNP [dm6]	T	C	5.063e^-4	0.939	INTRON Meltrin	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
2L	12619135	2L_12619135_SNP [dm3] 2L_12619135_SNP [dm6]	T	C	5.074e^-4	0.939	INTRON Ref2 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	13906118	3R_13906118_SNP [dm3] 3R_18080396_SNP [dm6]	C	T	5.075e^-4	0.939	UPSTREAM CG14317 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16508533	3L_16508533_SNP [dm3] 3L_16515433_SNP [dm6]	C	A	5.092e^-4	0.939	INTRON CG43373
2L	21616499	2L_21616499_SNP [dm3] 2L_21616499_SNP [dm6]	G	A	5.107e^-4	0.939	SYNONYMOUS_CODING CG2201 DOWNSTREAM CG2201
2R	18403072	2R_18403072_INS [dm3] 2R_22515567_INS [dm6]	A	AA	5.117e^-4	0.939	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7184949	3L_7184949_SNP [dm3] 3L_7191849_SNP [dm6]	T	G	5.120e^-4	0.939	INTERGENIC
2R	10843629	2R_10843629_SNP [dm3] 2R_14956124_SNP [dm6]	G	A	5.129e^-4	0.939	INTRON aPKC
X	14062070	X_14062070_SNP [dm3] X_14168037_SNP [dm6]	A	G	5.140e^-4	0.939	INTERGENIC
3L	5417350	3L_5417350_INS [dm3] 3L_5424250_INS [dm6]	A	AG	5.140e^-4	0.939	UTR_5_PRIME CG34391
2L	4190501	2L_4190501_SNP [dm3] 2L_4190501_SNP [dm6]	T	A	5.146e^-4	0.939	INTRON CG3714	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	11597359	2R_11597359_SNP [dm3] 2R_15709854_SNP [dm6]	G	C	5.148e^-4	0.939	INTERGENIC
2R	4474730	2R_4474730_SNP [dm3] 2R_8587225_SNP [dm6]	C	A	5.150e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_cad
2L	3410472	2L_3410472_SNP [dm3] 2L_3410472_SNP [dm6]	A	G	5.152e^-4	0.939	UPSTREAM CG8840 INTRON pgant2
2R	15059400	2R_15059400_SNP [dm3] 2R_19171895_SNP [dm6]	G	A	5.154e^-4	0.939	INTRON CG10737
X	16607781	X_16607781_SNP [dm3] X_16713748_SNP [dm6]	G	T	5.161e^-4	0.939	SYNONYMOUS_CODING CG13008 DOWNSTREAM CG34325	TF binding site mE1_TFBS_cad
2R	11216827	2R_11216827_SNP [dm3] 2R_15329322_SNP [dm6]	C	T	5.162e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	6539539	3L_6539539_SNP [dm3] 3L_6546439_SNP [dm6]	C	T	5.165e^-4	0.939	INTRON sfl
2L	2743622	2L_2743622_SNP [dm3] 2L_2743622_SNP [dm6]	T	C	5.167e^-4	0.939	NON_SYNONYMOUS_CODING CG9961 UTR_3_PRIME CG9961 DOWNSTREAM Hrs
3L	18066960	3L_18066960_SNP [dm3] 3L_18073860_SNP [dm6]	A	T	5.179e^-4	0.939	UTR_5_PRIME CG44004 DOWNSTREAM CR45391
2L	4546687	2L_4546687_SNP [dm3] 2L_4546687_SNP [dm6]	A	G	5.182e^-4	0.939	NON_SYNONYMOUS_CODING dp INTRON dp

By genomic position
Variant impact
Gene name

Mitochon_Consens_Len phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results