DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.269e^-14)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2653 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	2004922	3L_2004922_INS [dm3] 3L_2004922_INS [dm6]	T	TGGTGTGT	3.681e^-7	0.297	DOWNSTREAM CG42841 INTRON CG42841
3L	1999043	3L_1999043_SNP [dm3] 3L_1999043_SNP [dm6]	G	A	4.344e^-7	0.297	INTERGENIC
3L	1999145	3L_1999145_SNP [dm3] 3L_1999145_SNP [dm6]	G	A	4.952e^-7	0.297	INTERGENIC
3L	1999062	3L_1999062_SNP [dm3] 3L_1999062_SNP [dm6]	T	C	6.521e^-7	0.297	INTERGENIC
3L	1997949	3L_1997949_SNP [dm3] 3L_1997949_SNP [dm6]	G	C	7.920e^-7	0.297	INTERGENIC
3L	2003168	3L_2003168_SNP [dm3] 3L_2003168_SNP [dm6]	C	A	1.350e^-6	0.297	UTR_3_PRIME CG42841
X	16430681	X_16430681_SNP [dm3] X_16536648_SNP [dm6]	T	A	1.497e^-6	0.297	INTERGENIC
3L	2004455	3L_2004455_DEL [dm3] 3L_2004455_DEL [dm6]	TCG	A	1.822e^-6	0.297	DOWNSTREAM CG42841 INTRON CG42841
3R	25398180	3R_25398180_SNP [dm3] 3R_29572458_SNP [dm6]	A	G	1.984e^-6	0.297	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	25398178	3R_25398178_SNP [dm3] 3R_29572456_SNP [dm6]	A	G	1.999e^-6	0.297	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	1996667	3L_1996667_SNP [dm3] 3L_1996667_SNP [dm6]	A	G	2.041e^-6	0.297	INTERGENIC
2R	17204081	2R_17204081_SNP [dm3] 2R_21316576_SNP [dm6]	G	A	2.386e^-6	0.297	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	11349981	X_11349981_SNP [dm3] X_11455948_SNP [dm6]	C	A	2.449e^-6	0.297	NON_SYNONYMOUS_CODING HP5	TF binding site mE1_TFBS_sens
3L	9355412	3L_9355412_SNP [dm3] 3L_9362312_SNP [dm6]	C	T	2.539e^-6	0.297	SYNONYMOUS_CODING CG34456 DOWNSTREAM Klp67A & 1 other
3L	5992565	3L_5992565_SNP [dm3] 3L_5999465_SNP [dm6]	C	A	2.702e^-6	0.297	INTRON PVRAP
3L	1999192	3L_1999192_SNP [dm3] 3L_1999192_SNP [dm6]	G	A	2.734e^-6	0.297	INTERGENIC
2L	10834243	2L_10834243_SNP [dm3] 2L_10834243_SNP [dm6]	C	T	2.869e^-6	0.297	INTRON Nos
3R	19088328	3R_19088328_SNP [dm3] 3R_23262606_SNP [dm6]	G	A	2.992e^-6	0.297	UTR_3_PRIME orb
3L	2004753	3L_2004753_SNP [dm3] 3L_2004753_SNP [dm6]	G	A	3.145e^-6	0.297	DOWNSTREAM CG42841 INTRON CG42841
3L	2005293	3L_2005293_SNP [dm3] 3L_2005293_SNP [dm6]	A	G	3.302e^-6	0.297	UTR_3_PRIME CG42841
3L	5273681	3L_5273681_SNP [dm3] 3L_5280581_SNP [dm6]	G	C	3.623e^-6	0.297	INTERGENIC
3L	1997819	3L_1997819_SNP [dm3] 3L_1997819_SNP [dm6]	A	G	3.757e^-6	0.297	INTERGENIC
3L	6001607	3L_6001607_SNP [dm3] 3L_6008507_SNP [dm6]	T	C	3.772e^-6	0.297	DOWNSTREAM alphaKap4 INTRON PVRAP
3L	2000949	3L_2000949_SNP [dm3] 3L_2000949_SNP [dm6]	C	T	3.850e^-6	0.297	INTERGENIC
3R	25398136	3R_25398136_DEL [dm3] 3R_29572414_DEL [dm6]	TT	T	4.099e^-6	0.297	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	5197134	3L_5197134_SNP [dm3] 3L_5204034_SNP [dm6]	C	G	4.248e^-6	0.297	INTRON shep
2R	17204093	2R_17204093_SNP [dm3] 2R_21316588_SNP [dm6]	A	C	4.375e^-6	0.297	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	2004308	3L_2004308_SNP [dm3] 3L_2004308_SNP [dm6]	G	C	4.431e^-6	0.297	DOWNSTREAM CG42841 INTRON CG42841
3R	19200773	3R_19200773_SNP [dm3] 3R_23375051_SNP [dm6]	C	T	5.439e^-6	0.337	DOWNSTREAM CG42828 & 1 other INTERGENIC
3L	1996694	3L_1996694_SNP [dm3] 3L_1996694_SNP [dm6]	T	C	5.512e^-6	0.337	INTERGENIC
3R	25398191	3R_25398191_SNP [dm3] 3R_29572469_SNP [dm6]	G	A	5.944e^-6	0.337	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	2004298	3L_2004298_SNP [dm3] 3L_2004298_SNP [dm6]	T	A	6.194e^-6	0.337	DOWNSTREAM CG42841 INTRON CG42841
3L	1273290	3L_1273290_SNP [dm3] 3L_1273290_SNP [dm6]	A	T	6.319e^-6	0.337	INTRON CG9134
2L	10834245	2L_10834245_SNP [dm3] 2L_10834245_SNP [dm6]	G	A	6.608e^-6	0.337	INTRON Nos
3L	1996691	3L_1996691_SNP [dm3] 3L_1996691_SNP [dm6]	G	C	6.781e^-6	0.337	INTERGENIC
3L	10236960	3L_10236960_SNP [dm3] 3L_10243860_SNP [dm6]	A	T	6.948e^-6	0.337	UPSTREAM CR44541 INTRON Or67c
2L	21065272	2L_21065272_SNP [dm3] 2L_21065272_SNP [dm6]	A	G	7.082e^-6	0.337	INTRON CG9265
3L	2835271	3L_2835271_SNP [dm3] 3L_2835271_SNP [dm6]	T	A	7.114e^-6	0.337	INTRON CG43444
3L	1996662	3L_1996662_SNP [dm3] 3L_1996662_SNP [dm6]	A	G	7.428e^-6	0.337	INTERGENIC
2L	20942131	2L_20942131_SNP [dm3] 2L_20942131_SNP [dm6]	G	A	7.439e^-6	0.337	INTERGENIC
3L	20876225	3L_20876225_INS [dm3] 3L_20883125_INS [dm6]	T	TAAATTATATTAATTAAATA...	7.749e^-6	0.337	INTRON CG32432
3L	5197517	3L_5197517_SNP [dm3] 3L_5204417_SNP [dm6]	C	A	7.900e^-6	0.337	INTRON shep
3R	14437375	3R_14437375_SNP [dm3] 3R_18611653_SNP [dm6]	T	A	7.990e^-6	0.337	INTRON qin & 1 other
3R	18644615	3R_18644615_SNP [dm3] 3R_22818893_SNP [dm6]	G	A	8.088e^-6	0.337	INTERGENIC
X	18859778	X_18859778_SNP [dm3] X_18965745_SNP [dm6]	C	G	8.092e^-6	0.337	INTRON CG43759
3L	1996616	3L_1996616_SNP [dm3] 3L_1996616_SNP [dm6]	C	G	8.503e^-6	0.347	INTERGENIC
3L	6777779	3L_6777779_SNP [dm3] 3L_6784679_SNP [dm6]	C	G	9.119e^-6	0.364	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	14437361	3R_14437361_SNP [dm3] 3R_18611639_SNP [dm6]	T	A	9.837e^-6	0.379	INTRON qin & 1 other
3L	2002534	3L_2002534_SNP [dm3] 3L_2002534_SNP [dm6]	T	A	9.932e^-6	0.379	DOWNSTREAM CG42841 INTERGENIC
3R	14841118	3R_14841118_SNP [dm3] 3R_19015396_SNP [dm6]	T	C	1.010e^-5	0.379	INTRON gukh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	3902264	2R_3902264_SNP [dm3] 2R_8014759_SNP [dm6]	T	C	1.076e^-5	0.391	UPSTREAM mir-4981 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
3L	2001536	3L_2001536_SNP [dm3] 3L_2001536_SNP [dm6]	G	T	1.085e^-5	0.391	INTERGENIC
3L	2835279	3L_2835279_SNP [dm3] 3L_2835279_SNP [dm6]	A	T	1.151e^-5	0.407	INTRON CG43444
3L	2002301	3L_2002301_SNP [dm3] 3L_2002301_SNP [dm6]	C	G	1.178e^-5	0.409	DOWNSTREAM CG42841 INTERGENIC
3L	2002183	3L_2002183_DEL [dm3] 3L_2002183_DEL [dm6]	TA	T	1.214e^-5	0.414	DOWNSTREAM CG42841 INTERGENIC
3L	2002214	3L_2002214_SNP [dm3] 3L_2002214_SNP [dm6]	C	T	1.313e^-5	0.44	DOWNSTREAM CG42841 INTERGENIC
3L	1997206	3L_1997206_SNP [dm3] 3L_1997206_SNP [dm6]	T	C	1.341e^-5	0.441	INTERGENIC
2L	21065275	2L_21065275_SNP [dm3] 2L_21065275_SNP [dm6]	C	T	1.384e^-5	0.445	INTRON CG9265
X	3986496	X_3986496_SNP [dm3] X_4092463_SNP [dm6]	C	A	1.410e^-5	0.445	DOWNSTREAM CG43689 INTERGENIC
3L	3439380	3L_3439380_SNP [dm3] 3L_3439380_SNP [dm6]	C	A	1.423e^-5	0.445	INTRON eIF5B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	3439389	3L_3439389_SNP [dm3] 3L_3439389_SNP [dm6]	C	T	1.468e^-5	0.451	INTRON eIF5B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	2004628	3L_2004628_SNP [dm3] 3L_2004628_SNP [dm6]	A	G	1.512e^-5	0.454	DOWNSTREAM CG42841 INTRON CG42841
2L	9523873	2L_9523873_SNP [dm3] 2L_9523873_SNP [dm6]	G	A	1.532e^-5	0.454	INTRON Oatp30B	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
3R	25463438	3R_25463438_SNP [dm3] 3R_29637716_SNP [dm6]	A	G	1.603e^-5	0.454	INTRON Dop1R2
2L	7898211	2L_7898211_SNP [dm3] 2L_7898211_SNP [dm6]	C	A	1.620e^-5	0.454	INTRON Snoo
3R	14837826	3R_14837826_DEL [dm3] 3R_19012104_DEL [dm6]	TT	T	1.628e^-5	0.454	INTRON gukh	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	22067020	3R_22067020_SNP [dm3] 3R_26241298_SNP [dm6]	C	G	1.630e^-5	0.454	INTRON CR42745
3R	14437372	3R_14437372_SNP [dm3] 3R_18611650_SNP [dm6]	A	T	1.645e^-5	0.454	INTRON qin & 1 other
X	8937158	X_8937158_SNP [dm3] X_9043125_SNP [dm6]	T	G	1.678e^-5	0.454	INTRON CR43836 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	1997139	3L_1997139_SNP [dm3] 3L_1997139_SNP [dm6]	T	C	1.720e^-5	0.454	INTERGENIC
3R	19034837	3R_19034837_SNP [dm3] 3R_23209115_SNP [dm6]	A	T	1.735e^-5	0.454	INTRON cnc
3R	23382864	3R_23382864_DEL [dm3] 3R_27557142_DEL [dm6]	AGA	A	1.761e^-5	0.454	INTRON Klp98A	TF binding site BDTNP1_TFBS_z
X	8937161	X_8937161_SNP [dm3] X_9043128_SNP [dm6]	G	A	1.788e^-5	0.454	INTRON CR43836 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	13924655	3R_13924655_SNP [dm3] 3R_18098933_SNP [dm6]	T	C	1.794e^-5	0.454	INTRON sr
3R	16534452	3R_16534452_SNP [dm3] 3R_20708730_SNP [dm6]	A	T	1.817e^-5	0.454	INTRON Oamb
2L	1140456	2L_1140456_SNP [dm3] 2L_1140456_SNP [dm6]	C	T	1.854e^-5	0.458	UTR_3_PRIME CG4577
3L	5944919	3L_5944919_SNP [dm3] 3L_5951819_SNP [dm6]	G	A	1.901e^-5	0.463	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	20264189	3R_20264189_SNP [dm3] 3R_24438467_SNP [dm6]	A	T	2.018e^-5	0.485	INTRON nAChRalpha1
2R	11788652	2R_11788652_SNP [dm3] 2R_15901147_SNP [dm6]	G	T	2.100e^-5	0.492	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14790095	2L_14790095_DEL [dm3] 2L_14790095_DEL [dm6]	ATCTCCCACTGGGATGCGAA...	A	2.140e^-5	0.492	INTERGENIC
3L	9934181	3L_9934181_SNP [dm3] 3L_9941081_SNP [dm6]	G	A	2.177e^-5	0.492	INTRON CG34356	TF binding site BDTNP1_TFBS_hb
3L	2001857	3L_2001857_SNP [dm3] 3L_2001857_SNP [dm6]	G	C	2.185e^-5	0.492	INTERGENIC
3L	1997143	3L_1997143_SNP [dm3] 3L_1997143_SNP [dm6]	A	T	2.192e^-5	0.492	INTERGENIC
3L	2003258	3L_2003258_SNP [dm3] 3L_2003258_SNP [dm6]	C	A	2.229e^-5	0.492	UTR_3_PRIME CG42841
3R	26068476	3R_26068476_SNP [dm3] 3R_30242754_SNP [dm6]	C	T	2.229e^-5	0.492	SYNONYMOUS_CODING CG9737
3R	7877765	3R_7877765_SNP [dm3] 3R_12052043_SNP [dm6]	A	T	2.334e^-5	0.509	INTERGENIC
3R	13964446	3R_13964446_SNP [dm3] 3R_18138724_SNP [dm6]	A	G	2.461e^-5	0.53	INTERGENIC
2L	2623839	2L_2623839_SNP [dm3] 2L_2623839_SNP [dm6]	A	G	2.539e^-5	0.541	INTERGENIC
2R	9420329	2R_9420329_SNP [dm3] 2R_13532824_SNP [dm6]	A	G	2.613e^-5	0.551	UTR_5_PRIME Vmat INTRON Vmat	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	10237066	3L_10237066_SNP [dm3] 3L_10243966_SNP [dm6]	C	G	2.671e^-5	0.551	NON_SYNONYMOUS_CODING Or67c UPSTREAM CR44541
2R	14191675	2R_14191675_SNP [dm3] 2R_18304170_SNP [dm6]	A	T	2.702e^-5	0.551	UPSTREAM CG14505 INTRON sbb	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	3928101	3L_3928101_SNP [dm3] 3L_3928101_SNP [dm6]	G	A	2.744e^-5	0.551	INTRON Eip63F-1
2R	9385622	2R_9385622_SNP [dm3] 2R_13498117_SNP [dm6]	T	A	2.764e^-5	0.551	INTRON drk
3L	1996345	3L_1996345_SNP [dm3] 3L_1996345_SNP [dm6]	C	T	2.779e^-5	0.551	INTERGENIC
3R	25220787	3R_25220787_SNP [dm3] 3R_29395065_SNP [dm6]	C	G	2.790e^-5	0.551	INTRON Ptp99A
3R	26024512	3R_26024512_SNP [dm3] 3R_30198790_SNP [dm6]	A	C	2.844e^-5	0.556	NON_SYNONYMOUS_CODING CG9743	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2000000	3L_2000000_SNP [dm3] 3L_2000000_SNP [dm6]	G	C	2.948e^-5	0.562	INTERGENIC
3R	20989003	3R_20989003_SNP [dm3] 3R_25163281_SNP [dm6]	T	C	2.982e^-5	0.562	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18947292	3L_18947292_SNP [dm3] 3L_18954192_SNP [dm6]	A	C	2.995e^-5	0.562	INTRON CG6836
3R	13685496	3R_13685496_SNP [dm3] 3R_17859774_SNP [dm6]	C	A	2.995e^-5	0.562	INTRON tinc
3L	5600033	3L_5600033_SNP [dm3] 3L_5606933_SNP [dm6]	A	T	3.027e^-5	0.562	UTR_3_PRIME mthl2 DOWNSTREAM Eaf6
3L	10014295	3L_10014295_SNP [dm3] 3L_10021195_SNP [dm6]	T	C	3.101e^-5	0.57	INTRON dpr6
3L	12613444	3L_12613444_SNP [dm3] 3L_12620344_SNP [dm6]	G	A	3.133e^-5	0.57	SYNONYMOUS_CODING caup	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	6157570	X_6157570_SNP [dm3] X_6263537_SNP [dm6]	T	G	3.159e^-5	0.57	INTRON schlank
3R	19034780	3R_19034780_SNP [dm3] 3R_23209058_SNP [dm6]	C	T	3.205e^-5	0.571	INTRON cnc
2R	18708417	2R_18708417_SNP [dm3] 2R_22820912_SNP [dm6]	T	C	3.227e^-5	0.571	UPSTREAM CG42284 INTRON CG30271	TF binding site mE1_TFBS_chinmo
X	19685438	X_19685438_SNP [dm3] X_19791405_SNP [dm6]	C	G	3.308e^-5	0.58	INTERGENIC
3R	14439101	3R_14439101_SNP [dm3] 3R_18613379_SNP [dm6]	T	A	3.345e^-5	0.581	INTRON qin & 1 other
3L	12102111	3L_12102111_SNP [dm3] 3L_12109011_SNP [dm6]	T	A	3.411e^-5	0.582	INTERGENIC
3L	11214499	3L_11214499_SNP [dm3] 3L_11221399_SNP [dm6]	T	C	3.414e^-5	0.582	INTRON CG42671
3L	7006734	3L_7006734_SNP [dm3] 3L_7013634_SNP [dm6]	G	A	3.590e^-5	0.607	UPSTREAM Mp INTRON Mp
3L	10534765	3L_10534765_SNP [dm3] 3L_10541665_SNP [dm6]	T	C	3.839e^-5	0.623	INTRON A2bp1
3L	6022549	3L_6022549_SNP [dm3] 3L_6029449_SNP [dm6]	G	A	3.870e^-5	0.623	INTERGENIC
3L	17280264	3L_17280264_SNP [dm3] 3L_17287164_SNP [dm6]	C	G	3.898e^-5	0.623	INTERGENIC
3L	5603479	3L_5603479_SNP [dm3] 3L_5610379_SNP [dm6]	A	T	4.007e^-5	0.623	INTERGENIC
X	17204033	X_17204033_SNP [dm3] X_17310000_SNP [dm6]	A	C	4.054e^-5	0.623	INTERGENIC
3L	5600035	3L_5600035_SNP [dm3] 3L_5606935_SNP [dm6]	A	T	4.069e^-5	0.623	UTR_3_PRIME mthl2 DOWNSTREAM Eaf6
3L	1996637	3L_1996637_SNP [dm3] 3L_1996637_SNP [dm6]	G	A	4.070e^-5	0.623	INTERGENIC
3R	17003184	3R_17003184_DEL [dm3] 3R_21177462_DEL [dm6]	TGCGTAAGTAAGCTT...	T	4.136e^-5	0.623	INTRON SNF4Agamma
X	20576942	X_20576942_SNP [dm3] X_20705915_SNP [dm6]	T	A	4.145e^-5	0.623	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	2002838	3L_2002838_DEL [dm3] 3L_2002838_DEL [dm6]	TT	T	4.161e^-5	0.623	DOWNSTREAM CG42841 INTERGENIC
2L	9523872	2L_9523872_SNP [dm3] 2L_9523872_SNP [dm6]	T	C	4.187e^-5	0.623	INTRON Oatp30B	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
3R	10511289	3R_10511289_SNP [dm3] 3R_14685567_SNP [dm6]	G	A	4.252e^-5	0.623	INTRON Meltrin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	2001713	3L_2001713_SNP [dm3] 3L_2001713_SNP [dm6]	A	G	4.285e^-5	0.623	INTERGENIC
3L	5600030	3L_5600030_DEL [dm3] 3L_5606930_DEL [dm6]	AC	A	4.314e^-5	0.623	UTR_3_PRIME mthl2 DOWNSTREAM Eaf6
3L	5600037	3L_5600037_INS [dm3] 3L_5606937_INS [dm6]	G	GAA	4.368e^-5	0.623	UTR_3_PRIME mthl2 DOWNSTREAM Eaf6
2R	12807373	2R_12807373_SNP [dm3] 2R_16919868_SNP [dm6]	A	T	4.426e^-5	0.623	INTERGENIC
2L	11821224	2L_11821224_SNP [dm3] 2L_11821224_SNP [dm6]	C	T	4.487e^-5	0.623	NON_SYNONYMOUS_CODING Pde1c INTRON Pde1c
2L	16870627	2L_16870627_SNP [dm3] 2L_16870627_SNP [dm6]	C	T	4.491e^-5	0.623	EXON CR31781
2R	3911095	2R_3911095_SNP [dm3] 2R_8023590_SNP [dm6]	C	T	4.493e^-5	0.623	EXON CR45267
3L	2000731	3L_2000731_SNP [dm3] 3L_2000731_SNP [dm6]	A	T	4.545e^-5	0.623	INTERGENIC
2R	20134857	2R_20134857_SNP [dm3] 2R_24247334_SNP [dm6]	C	T	4.566e^-5	0.623	INTRON nord
3R	14916525	3R_14916525_SNP [dm3] 3R_19090803_SNP [dm6]	T	G	4.623e^-5	0.623	INTRON cdi
3L	22897713	3L_22897713_SNP [dm3] 3L_22904613_SNP [dm6]	G	T	4.649e^-5	0.623	NON_SYNONYMOUS_CODING BoYb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	27022220	3R_27022220_SNP [dm3] 3R_31196498_SNP [dm6]	T	A	4.707e^-5	0.623	UPSTREAM mesh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9839036	2L_9839036_SNP [dm3] 2L_9839036_SNP [dm6]	G	C	4.725e^-5	0.623	INTRON nAChRalpha6
3L	16693940	3L_16693940_SNP [dm3] 3L_16700840_SNP [dm6]	A	C	4.768e^-5	0.623	INTRON Lasp & 1 other
2L	10671528	2L_10671528_SNP [dm3] 2L_10671528_SNP [dm6]	A	T	4.784e^-5	0.623	DOWNSTREAM CG31871 INTERGENIC
X	2670126	X_2670126_SNP [dm3] X_2776093_SNP [dm6]	T	G	4.850e^-5	0.623	INTRON kirre
3L	2004867	3L_2004867_SNP [dm3] 3L_2004867_SNP [dm6]	G	A	4.892e^-5	0.623	DOWNSTREAM CG42841 INTRON CG42841
2R	11575868	2R_11575868_SNP [dm3] 2R_15688363_SNP [dm6]	A	G	4.906e^-5	0.623	SYNONYMOUS_CODING Cep89 DOWNSTREAM Ranbp11	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	2670124	X_2670124_SNP [dm3] X_2776091_SNP [dm6]	A	T	5.000e^-5	0.623	INTRON kirre
2L	10944390	2L_10944390_SNP [dm3] 2L_10944390_SNP [dm6]	G	C	5.027e^-5	0.623	UPSTREAM CR44493 INTRON dpr2
X	5765350	X_5765350_SNP [dm3] X_5871317_SNP [dm6]	T	A	5.046e^-5	0.623	INTRON GAA1	TF binding site mE1_TFBS_cad
3L	1999368	3L_1999368_SNP [dm3] 3L_1999368_SNP [dm6]	C	A	5.047e^-5	0.623	INTERGENIC
3L	1997808	3L_1997808_SNP [dm3] 3L_1997808_SNP [dm6]	A	C	5.079e^-5	0.623	INTERGENIC
2R	12807372	2R_12807372_SNP [dm3] 2R_16919867_SNP [dm6]	T	A	5.107e^-5	0.623	INTERGENIC
3L	9934180	3L_9934180_SNP [dm3] 3L_9941080_SNP [dm6]	C	G	5.142e^-5	0.623	INTRON CG34356	TF binding site BDTNP1_TFBS_hb
3L	1996351	3L_1996351_SNP [dm3] 3L_1996351_SNP [dm6]	T	A	5.148e^-5	0.623	INTERGENIC
2L	2897179	2L_2897179_SNP [dm3] 2L_2897179_SNP [dm6]	C	T	5.185e^-5	0.623	INTRON lilli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	22064956	3R_22064956_SNP [dm3] 3R_26239234_SNP [dm6]	T	C	5.216e^-5	0.623	INTRON CR42745
2R	2051002	2R_2051002_SNP [dm3] 2R_6163497_SNP [dm6]	A	C	5.250e^-5	0.623	UPSTREAM tRNA:K2:42Ac DOWNSTREAM tRNA:N5:42Aa INTRON EcR	transposable element FlyBase
3L	3785118	3L_3785118_SNP [dm3] 3L_3785118_SNP [dm6]	G	A	5.279e^-5	0.623	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_sens
3L	9304488	3L_9304488_SNP [dm3] 3L_9311388_SNP [dm6]	G	C	5.286e^-5	0.623	INTERGENIC
X	16886317	X_16886317_SNP [dm3] X_16992284_SNP [dm6]	A	T	5.306e^-5	0.623	INTRON CG45002
3R	22786661	3R_22786661_SNP [dm3] 3R_26960939_SNP [dm6]	G	A	5.324e^-5	0.623	DOWNSTREAM Tsp97E INTERGENIC
X	19685270	X_19685270_SNP [dm3] X_19791237_SNP [dm6]	G	T	5.350e^-5	0.623	INTERGENIC
X	19685530	X_19685530_SNP [dm3] X_19791497_SNP [dm6]	G	C	5.368e^-5	0.623	INTERGENIC
2L	3675493	2L_3675493_SNP [dm3] 2L_3675493_SNP [dm6]	A	G	5.376e^-5	0.623	INTRON CG34340
X	9195197	X_9195197_DEL [dm3] X_9301164_DEL [dm6]	ATTTGCTTTTTG...	A	5.462e^-5	0.623	INTRON lz
3L	6290649	3L_6290649_SNP [dm3] 3L_6297549_SNP [dm6]	A	T	5.472e^-5	0.623	INTERGENIC
2L	19102417	2L_19102417_SNP [dm3] 2L_19102417_SNP [dm6]	G	T	5.496e^-5	0.623	SYNONYMOUS_CODING CG17344 UTR_3_PRIME CG43731 INTRON Lim3
2L	9839039	2L_9839039_SNP [dm3] 2L_9839039_SNP [dm6]	A	G	5.519e^-5	0.623	INTRON nAChRalpha6
2L	13237450	2L_13237450_SNP [dm3] 2L_13237450_SNP [dm6]	G	A	5.559e^-5	0.623	INTRON CG5867
3L	2945474	3L_2945474_SNP [dm3] 3L_2945474_SNP [dm6]	T	C	5.636e^-5	0.623	UTR_3_PRIME Shab INTRON Shab
3L	6948719	3L_6948719_SNP [dm3] 3L_6955619_SNP [dm6]	G	T	5.680e^-5	0.623	UPSTREAM CG9948 & 1 other INTRON CG10077	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	7898839	2L_7898839_SNP [dm3] 2L_7898839_SNP [dm6]	C	A	5.788e^-5	0.623	INTRON Snoo	TF binding site mE1_TFBS_cad
3L	4057796	3L_4057796_SNP [dm3] 3L_4057796_SNP [dm6]	A	T	5.837e^-5	0.623	SYNONYMOUS_CODING CG1136	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14437250	3R_14437250_SNP [dm3] 3R_18611528_SNP [dm6]	A	T	5.857e^-5	0.623	INTRON qin & 1 other
2L	9549766	2L_9549766_SNP [dm3] 2L_9549766_SNP [dm6]	G	A	5.889e^-5	0.623	INTRON jp
2R	17204195	2R_17204195_DEL [dm3] 2R_21316690_DEL [dm6]	TT	T	5.916e^-5	0.623	SPLICE_SITE_REGION CG9485 INTRON CG9485	TF binding site mE1_TFBS_cad
2R	7288147	2R_7288147_SNP [dm3] 2R_11400642_SNP [dm6]	C	T	5.922e^-5	0.623	UPSTREAM tRNA:CR30506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2R	14542307	2R_14542307_INS [dm3] 2R_18654802_INS [dm6]	A	AC	5.923e^-5	0.623	INTRON SP2637	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	7898751	2L_7898751_SNP [dm3] 2L_7898751_SNP [dm6]	G	A	5.926e^-5	0.623	INTRON Snoo	TF binding site mE1_TFBS_cad
2L	7898754	2L_7898754_SNP [dm3] 2L_7898754_SNP [dm6]	A	T	5.926e^-5	0.623	INTRON Snoo	TF binding site mE1_TFBS_cad
2R	10475872	2R_10475872_SNP [dm3] 2R_14588367_SNP [dm6]	A	G	5.942e^-5	0.623	DOWNSTREAM ttv INTERGENIC
2R	17204164	2R_17204164_SNP [dm3] 2R_21316659_SNP [dm6]	A	T	5.963e^-5	0.623	INTRON CG9485	TF binding site mE1_TFBS_cad
3R	4344538	3R_4344538_SNP [dm3] 3R_8518816_SNP [dm6]	A	T	6.023e^-5	0.623	UPSTREAM CG11737 INTRON CG11737
2R	9659460	2R_9659460_INS [dm3] 2R_13771955_INS [dm6]	C	CAT	6.142e^-5	0.623	INTRON Cpr50Ca
X	15956610	X_15956610_SNP [dm3] X_16062577_SNP [dm6]	C	G	6.150e^-5	0.623	SYNONYMOUS_CODING CG12395 DOWNSTREAM Muc14A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	12101977	3L_12101977_SNP [dm3] 3L_12108877_SNP [dm6]	G	T	6.158e^-5	0.623	INTERGENIC
2L	10132774	2L_10132774_SNP [dm3] 2L_10132774_SNP [dm6]	G	A	6.180e^-5	0.623	INTRON CG44153
3R	24335719	3R_24335719_SNP [dm3] 3R_28509997_SNP [dm6]	T	A	6.190e^-5	0.623	INTRON Dhc98D	TF binding site mE1_TFBS_cad
X	2691554	X_2691554_SNP [dm3] X_2797521_SNP [dm6]	G	T	6.235e^-5	0.623	INTRON kirre
3L	17280374	3L_17280374_SNP [dm3] 3L_17287274_SNP [dm6]	T	C	6.263e^-5	0.623	INTERGENIC
3L	3928095	3L_3928095_SNP [dm3] 3L_3928095_SNP [dm6]	T	C	6.285e^-5	0.623	INTRON Eip63F-1
3R	14368897	3R_14368897_SNP [dm3] 3R_18543175_SNP [dm6]	C	A	6.392e^-5	0.623	INTRON fru
3R	26839875	3R_26839875_SNP [dm3] 3R_31014153_SNP [dm6]	T	G	6.402e^-5	0.623	INTRON 5-HT7
2R	14022374	2R_14022374_SNP [dm3] 2R_18134869_SNP [dm6]	G	A	6.451e^-5	0.623	UPSTREAM Pcl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12411561	3L_12411561_SNP [dm3] 3L_12418461_SNP [dm6]	C	T	6.471e^-5	0.623	UPSTREAM ArfGAP1 INTERGENIC	TF binding site mE1_TFBS_cnc
3L	17020098	3L_17020098_SNP [dm3] 3L_17026998_SNP [dm6]	G	C	6.497e^-5	0.623	UTR_3_PRIME Fit2 UPSTREAM CG7730	TF binding site mE1_TFBS_cad
3L	17020146	3L_17020146_SNP [dm3] 3L_17027046_SNP [dm6]	G	A	6.497e^-5	0.623	UTR_3_PRIME Fit2 UPSTREAM CG7730	TF binding site mE1_TFBS_cad
2L	9523894	2L_9523894_SNP [dm3] 2L_9523894_SNP [dm6]	A	T	6.500e^-5	0.623	INTRON Oatp30B	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
3L	1996361	3L_1996361_SNP [dm3] 3L_1996361_SNP [dm6]	G	C	6.552e^-5	0.623	INTERGENIC
X	12407473	X_12407473_INS [dm3] X_12513440_INS [dm6]	T	TT	6.682e^-5	0.623	INTRON CG2556	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	2005785	3L_2005785_SNP [dm3] 3L_2005785_SNP [dm6]	G	A	6.757e^-5	0.623	UPSTREAM CG42841 INTERGENIC
3L	17020153	3L_17020153_SNP [dm3] 3L_17027053_SNP [dm6]	T	C	6.766e^-5	0.623	UTR_3_PRIME Fit2 UPSTREAM CG7730	TF binding site mE1_TFBS_cad
2L	13916342	2L_13916342_SNP [dm3] 2L_13916342_SNP [dm6]	G	A	6.783e^-5	0.623	INTRON Ance-3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16632547	X_16632547_SNP [dm3] X_16738514_SNP [dm6]	A	G	6.790e^-5	0.623	NON_SYNONYMOUS_CODING TwdlZ INTRON CG9634	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	16534400	3R_16534400_SNP [dm3] 3R_20708678_SNP [dm6]	G	A	6.824e^-5	0.623	INTRON Oamb
2R	9548009	2R_9548009_DEL [dm3] 2R_13660504_DEL [dm6]	CA	C	6.837e^-5	0.623	DOWNSTREAM CG6209 INTRON fas	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14439122	3R_14439122_SNP [dm3] 3R_18613400_SNP [dm6]	C	G	6.870e^-5	0.623	INTRON qin & 1 other
X	19685441	X_19685441_SNP [dm3] X_19791408_SNP [dm6]	T	G	6.884e^-5	0.623	INTERGENIC
3L	9355083	3L_9355083_DEL [dm3] 3L_9361983_DEL [dm6]	TT	T	6.906e^-5	0.623	UTR_3_PRIME CG34455 UPSTREAM CG34456 DOWNSTREAM Klp67A
2L	3340556	2L_3340556_SNP [dm3] 2L_3340556_SNP [dm6]	T	C	7.035e^-5	0.623	INTRON E23
3L	15758061	3L_15758061_INS [dm3] 3L_15764961_INS [dm6]	A	ACGA	7.047e^-5	0.623	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9345445	2R_9345445_SNP [dm3] 2R_13457940_SNP [dm6]	G	A	7.094e^-5	0.623	SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3986459	X_3986459_SNP [dm3] X_4092426_SNP [dm6]	T	C	7.162e^-5	0.623	DOWNSTREAM CG43689 INTERGENIC
3L	14370480	3L_14370480_SNP [dm3] 3L_14377380_SNP [dm6]	A	T	7.178e^-5	0.623	INTERGENIC
3R	17967979	3R_17967979_SNP [dm3] 3R_22142257_SNP [dm6]	T	A	7.196e^-5	0.623	INTRON SKIP	TF binding site BDTNP1_TFBS_twi
3R	24336333	3R_24336333_SNP [dm3] 3R_28510611_SNP [dm6]	G	A	7.287e^-5	0.623	SYNONYMOUS_CODING Dhc98D
2L	10186259	2L_10186259_SNP [dm3] 2L_10186259_SNP [dm6]	T	A	7.380e^-5	0.623	INTRON Sur
3L	5262905	3L_5262905_SNP [dm3] 3L_5269805_SNP [dm6]	T	A	7.388e^-5	0.623	INTRON shep
X	17048276	X_17048276_DEL [dm3] X_17154243_DEL [dm6]	AA	A	7.407e^-5	0.623	UTR_3_PRIME xmas-2 INTRON xmas-1
2R	10843629	2R_10843629_SNP [dm3] 2R_14956124_SNP [dm6]	G	A	7.442e^-5	0.623	INTRON aPKC
2R	9638216	2R_9638216_SNP [dm3] 2R_13750711_SNP [dm6]	A	G	7.467e^-5	0.623	INTERGENIC
3L	17280352	3L_17280352_SNP [dm3] 3L_17287252_SNP [dm6]	G	A	7.532e^-5	0.623	INTERGENIC
3R	16058583	3R_16058583_SNP [dm3] 3R_20232861_SNP [dm6]	G	A	7.559e^-5	0.623	INTRON Nlg4
2R	10475868	2R_10475868_SNP [dm3] 2R_14588363_SNP [dm6]	A	G	7.583e^-5	0.623	DOWNSTREAM ttv INTERGENIC
3L	13769604	3L_13769604_SNP [dm3] 3L_13776504_SNP [dm6]	C	A	7.619e^-5	0.623	INTRON bru-3
3L	2595302	3L_2595302_SNP [dm3] 3L_2595302_SNP [dm6]	G	A	7.620e^-5	0.623	UTR_3_PRIME dos UPSTREAM CG16984 DOWNSTREAM CG12182	TF binding site mE1_TFBS_cad
3L	1173790	3L_1173790_SNP [dm3] 3L_1173790_SNP [dm6]	T	G	7.671e^-5	0.623	SYNONYMOUS_CODING bab2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	21124158	2R_21124158_DEL [dm3] 2R_25236635_DEL [dm6]	TT	T	7.672e^-5	0.623	INTRON CG9380	TF binding site mE1_TFBS_Kr
3R	17967972	3R_17967972_SNP [dm3] 3R_22142250_SNP [dm6]	C	T	7.678e^-5	0.623	INTRON SKIP	TF binding site BDTNP1_TFBS_twi
3R	27117320	3R_27117320_SNP [dm3] 3R_31291598_SNP [dm6]	T	C	7.721e^-5	0.623	INTERGENIC
2R	18867611	2R_18867611_SNP [dm3] 2R_22980088_SNP [dm6]	G	T	7.724e^-5	0.623	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3439390	3L_3439390_SNP [dm3] 3L_3439390_SNP [dm6]	A	G	7.809e^-5	0.623	INTRON eIF5B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	6786326	3L_6786326_INS [dm3] 3L_6793226_INS [dm6]	T	TT	7.816e^-5	0.623	UTR_3_PRIME vvl
2L	10856177	2L_10856177_SNP [dm3] 2L_10856177_SNP [dm6]	G	T	7.852e^-5	0.623	SYNONYMOUS_CODING Dnz1 DOWNSTREAM ial	TF binding site mE1_TFBS_cad
3L	17235726	3L_17235726_SNP [dm3] 3L_17242626_SNP [dm6]	T	A	7.897e^-5	0.623	UPSTREAM CG6512 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA transposable element FlyBase
X	15116250	X_15116250_INS [dm3] X_15222217_INS [dm6]	C	CT	7.898e^-5	0.623	DOWNSTREAM CG43076 INTERGENIC
2R	13495014	2R_13495014_SNP [dm3] 2R_17607509_SNP [dm6]	G	A	7.937e^-5	0.623	NON_SYNONYMOUS_CODING CG10936	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18640202	3R_18640202_SNP [dm3] 3R_22814480_SNP [dm6]	C	A	7.979e^-5	0.623	DOWNSTREAM CG13840 INTERGENIC
X	2781524	X_2781524_SNP [dm3] X_2887491_SNP [dm6]	A	T	7.990e^-5	0.623	INTRON kirre
X	8937166	X_8937166_SNP [dm3] X_9043133_SNP [dm6]	A	G	7.999e^-5	0.623	INTRON CR43836 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	2001547	3L_2001547_SNP [dm3] 3L_2001547_SNP [dm6]	T	C	8.013e^-5	0.623	INTERGENIC
X	16266035	X_16266035_SNP [dm3] X_16372002_SNP [dm6]	G	A	8.026e^-5	0.623	DOWNSTREAM nonA INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	16538567	2L_16538567_SNP [dm3] 2L_16538567_SNP [dm6]	C	T	8.130e^-5	0.623	INTERGENIC
3L	1999128	3L_1999128_SNP [dm3] 3L_1999128_SNP [dm6]	C	T	8.155e^-5	0.623	INTERGENIC
X	15171514	X_15171514_SNP [dm3] X_15277481_SNP [dm6]	T	A	8.162e^-5	0.623	INTERGENIC
3R	15673811	3R_15673811_SNP [dm3] 3R_19848089_SNP [dm6]	A	G	8.178e^-5	0.623	INTRON CG4662	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	12977324	2L_12977324_SNP [dm3] 2L_12977324_SNP [dm6]	T	C	8.253e^-5	0.623	SYNONYMOUS_CODING Vha68-2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26935902	3R_26935902_SNP [dm3] 3R_31110180_SNP [dm6]	A	T	8.274e^-5	0.623	UPSTREAM CG11318 INTERGENIC
3R	16930145	3R_16930145_SNP [dm3] 3R_21104423_SNP [dm6]	C	T	8.284e^-5	0.623	DOWNSTREAM Sec15 INTRON CG5745
X	18754285	X_18754285_SNP [dm3] X_18860252_SNP [dm6]	G	A	8.322e^-5	0.623	UPSTREAM CG32544 DOWNSTREAM CG7288 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	7171072	3L_7171072_SNP [dm3] 3L_7177972_SNP [dm6]	G	A	8.351e^-5	0.623	INTRON Dscam2
3L	7171106	3L_7171106_SNP [dm3] 3L_7178006_SNP [dm6]	C	T	8.351e^-5	0.623	INTRON Dscam2
3R	27162074	3R_27162074_SNP [dm3] 3R_31336352_SNP [dm6]	C	T	8.404e^-5	0.623	INTRON CG34347
X	14757350	X_14757350_SNP [dm3] X_14863317_SNP [dm6]	T	A	8.438e^-5	0.623	UTR_3_PRIME CG9518 INTRON Flo2
2L	10546048	2L_10546048_SNP [dm3] 2L_10546048_SNP [dm6]	G	A	8.438e^-5	0.623	SYNONYMOUS_CODING Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14011837	2R_14011837_SNP [dm3] 2R_18124332_SNP [dm6]	A	T	8.445e^-5	0.623	UPSTREAM stau INTRON stau	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
3R	13430181	3R_13430181_SNP [dm3] 3R_17604459_SNP [dm6]	C	T	8.456e^-5	0.623	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	11187187	2L_11187187_SNP [dm3] 2L_11187187_SNP [dm6]	T	A	8.482e^-5	0.623	INTRON Ca-beta
3R	21997245	3R_21997245_SNP [dm3] 3R_26171523_SNP [dm6]	G	A	8.594e^-5	0.623	INTRON CG31323
3L	6291176	3L_6291176_SNP [dm3] 3L_6298076_SNP [dm6]	G	A	8.623e^-5	0.623	INTERGENIC	TF binding site mE1_TFBS_cad
3L	7712676	3L_7712676_SNP [dm3] 3L_7719576_SNP [dm6]	G	A	8.637e^-5	0.623	INTRON CG32373 & 1 other
3R	14448357	3R_14448357_INS [dm3] 3R_18622635_INS [dm6]	T	TTTATTTATACCCCAATTAG...	8.758e^-5	0.623	INTRON qin	TF binding site mE1_TFBS_inv
X	12163327	X_12163327_SNP [dm3] X_12269294_SNP [dm6]	A	G	8.770e^-5	0.623	INTRON Ten-a
2L	2622639	2L_2622639_SNP [dm3] 2L_2622639_SNP [dm6]	C	T	8.810e^-5	0.623	INTERGENIC
X	13905863	X_13905863_SNP [dm3] X_14011830_SNP [dm6]	G	A	8.818e^-5	0.623	INTERGENIC
X	8438170	X_8438170_SNP [dm3] X_8544137_SNP [dm6]	G	C	8.862e^-5	0.623	INTRON Nrg
3L	21235944	3L_21235944_SNP [dm3] 3L_21242844_SNP [dm6]	T	C	8.872e^-5	0.623	INTRON Eip78C
2L	12397314	2L_12397314_SNP [dm3] 2L_12397314_SNP [dm6]	A	T	8.889e^-5	0.623	UTR_3_PRIME bru-2 UPSTREAM Pkd2
3L	17235725	3L_17235725_SNP [dm3] 3L_17242625_SNP [dm6]	C	G	8.940e^-5	0.623	UPSTREAM CG6512 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA transposable element FlyBase
3R	25520272	3R_25520272_SNP [dm3] 3R_29694550_SNP [dm6]	T	C	8.972e^-5	0.623	INTRON dmrt99B
3R	16534441	3R_16534441_SNP [dm3] 3R_20708719_SNP [dm6]	C	T	9.045e^-5	0.623	INTRON Oamb
2L	3797314	2L_3797314_SNP [dm3] 2L_3797314_SNP [dm6]	T	C	9.070e^-5	0.623	SYNONYMOUS_CODING CG3921
2R	20384295	2R_20384295_SNP [dm3] 2R_24496772_SNP [dm6]	A	G	9.071e^-5	0.623	SYNONYMOUS_CODING Crtp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	2670119	X_2670119_DEL [dm3] X_2776086_DEL [dm6]	AGCC	A	9.106e^-5	0.623	INTRON kirre
2L	3584266	2L_3584266_SNP [dm3] 2L_3584266_SNP [dm6]	C	G	9.135e^-5	0.623	INTERGENIC
3L	12240361	3L_12240361_SNP [dm3] 3L_12247261_SNP [dm6]	A	C	9.183e^-5	0.623	INTRON app
3L	16075402	3L_16075402_SNP [dm3] 3L_16082302_SNP [dm6]	A	C	9.201e^-5	0.623	UPSTREAM CG33258 DOWNSTREAM Mbs INTERGENIC
2L	12619533	2L_12619533_SNP [dm3] 2L_12619533_SNP [dm6]	G	A	9.294e^-5	0.623	INTRON Ref2 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	1999350	3L_1999350_SNP [dm3] 3L_1999350_SNP [dm6]	T	A	9.354e^-5	0.623	INTERGENIC
3R	21835312	3R_21835312_DEL [dm3] 3R_26009590_DEL [dm6]	CAGGCC	C	9.404e^-5	0.623	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_jumu mE1_TFBS_sens
3R	23382884	3R_23382884_DEL [dm3] 3R_27557162_DEL [dm6]	AA	A	9.406e^-5	0.623	INTRON Klp98A	TF binding site BDTNP1_TFBS_z
3L	6777577	3L_6777577_SNP [dm3] 3L_6784477_SNP [dm6]	T	C	9.435e^-5	0.623	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2R	20204293	2R_20204293_SNP [dm3] 2R_24316770_SNP [dm6]	A	G	9.445e^-5	0.623	INTERGENIC
2L	16921207	2L_16921207_SNP [dm3] 2L_16921207_SNP [dm6]	C	T	9.451e^-5	0.623	INTERGENIC
3R	23382912	3R_23382912_SNP [dm3] 3R_27557190_SNP [dm6]	C	A	9.540e^-5	0.623	INTRON Klp98A
3L	13769605	3L_13769605_SNP [dm3] 3L_13776505_SNP [dm6]	T	A	9.557e^-5	0.623	INTRON bru-3
X	10804645	X_10804645_SNP [dm3] X_10910612_SNP [dm6]	C	G	9.832e^-5	0.623	INTRON CG43901	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3666204	2L_3666204_DEL [dm3] 2L_3666204_DEL [dm6]	GT	A	9.863e^-5	0.623	INTRON CG34340
3L	9355322	3L_9355322_SNP [dm3] 3L_9362222_SNP [dm6]	G	A	9.898e^-5	0.623	SYNONYMOUS_CODING CG34456 DOWNSTREAM Klp67A & 1 other
3R	13685535	3R_13685535_SNP [dm3] 3R_17859813_SNP [dm6]	C	T	9.916e^-5	0.623	INTRON tinc
2L	10132763	2L_10132763_SNP [dm3] 2L_10132763_SNP [dm6]	T	A	1.003e^-4	0.623	INTRON CG44153
2R	3902532	2R_3902532_SNP [dm3] 2R_8015027_SNP [dm6]	T	C	1.011e^-4	0.623	UPSTREAM mir-4981 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14237921	2R_14237921_SNP [dm3] 2R_18350416_SNP [dm6]	G	C	1.012e^-4	0.623	INTRON sbb
X	12021418	X_12021418_INS [dm3] X_12127385_INS [dm6]	A	AAA	1.015e^-4	0.623	UPSTREAM Ten-a INTRON Ten-a
2L	9185996	2L_9185996_SNP [dm3] 2L_9185996_SNP [dm6]	C	A	1.018e^-4	0.623	INTRON tai	TF binding site BDTNP1_TFBS_prd
2L	17152437	2L_17152437_SNP [dm3] 2L_17152437_SNP [dm6]	G	T	1.025e^-4	0.623	INTRON beat-IIIa & 1 other
3L	7852205	3L_7852205_SNP [dm3] 3L_7859105_SNP [dm6]	T	A	1.025e^-4	0.623	INTRON Pdp1
X	15116292	X_15116292_SNP [dm3] X_15222259_SNP [dm6]	A	T	1.028e^-4	0.623	DOWNSTREAM CG43076 INTERGENIC
3L	11213503	3L_11213503_SNP [dm3] 3L_11220403_SNP [dm6]	A	C	1.031e^-4	0.623	INTRON CG42671	TF binding site mE1_TFBS_cad
2R	4917049	2R_4917049_SNP [dm3] 2R_9029544_SNP [dm6]	T	A	1.033e^-4	0.623	INTRON CG8170
2L	10944453	2L_10944453_INS [dm3] 2L_10944453_INS [dm6]	A	ATGTT	1.046e^-4	0.623	UPSTREAM CR44493 INTRON dpr2
2L	17078205	2L_17078205_SNP [dm3] 2L_17078205_SNP [dm6]	C	T	1.047e^-4	0.623	INTERGENIC
3L	2005742	3L_2005742_SNP [dm3] 3L_2005742_SNP [dm6]	A	G	1.047e^-4	0.623	UPSTREAM CG42841 INTERGENIC
3R	27022990	3R_27022990_SNP [dm3] 3R_31197268_SNP [dm6]	A	G	1.054e^-4	0.623	INTRON CG1544	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	19685610	X_19685610_SNP [dm3] X_19791577_SNP [dm6]	G	T	1.057e^-4	0.623	INTERGENIC
2R	9638486	2R_9638486_SNP [dm3] 2R_13750981_SNP [dm6]	A	G	1.060e^-4	0.623	INTERGENIC
2R	12263980	2R_12263980_SNP [dm3] 2R_16376475_SNP [dm6]	G	A	1.063e^-4	0.623	INTERGENIC
3R	9275389	3R_9275389_SNP [dm3] 3R_13449667_SNP [dm6]	A	T	1.067e^-4	0.623	UPSTREAM CG14372 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	26878386	3R_26878386_SNP [dm3] 3R_31052664_SNP [dm6]	T	A	1.069e^-4	0.623	UTR_3_PRIME l_3_03670 DOWNSTREAM Aph-4	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	26780417	3R_26780417_SNP [dm3] 3R_30954695_SNP [dm6]	A	G	1.071e^-4	0.623	INTERGENIC
3R	26785264	3R_26785264_SNP [dm3] 3R_30959542_SNP [dm6]	G	A	1.071e^-4	0.623	UPSTREAM CG15548 INTERGENIC
2R	3616304	2R_3616304_SNP [dm3] 2R_7728799_SNP [dm6]	G	T	1.078e^-4	0.623	INTRON CG18812
3L	11620476	3L_11620476_SNP [dm3] 3L_11627376_SNP [dm6]	G	A	1.078e^-4	0.623	SYNONYMOUS_CODING PCID2 UPSTREAM CG18815	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12101983	3L_12101983_SNP [dm3] 3L_12108883_SNP [dm6]	G	T	1.083e^-4	0.623	INTERGENIC
3R	26936588	3R_26936588_SNP [dm3] 3R_31110866_SNP [dm6]	C	T	1.085e^-4	0.623	INTERGENIC
2L	3867495	2L_3867495_SNP [dm3] 2L_3867495_SNP [dm6]	T	C	1.088e^-4	0.623	UTR_3_PRIME CG3964 UPSTREAM Cep97	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_hkb
X	13905861	X_13905861_SNP [dm3] X_14011828_SNP [dm6]	A	T	1.088e^-4	0.623	INTERGENIC
3R	19201084	3R_19201084_SNP [dm3] 3R_23375362_SNP [dm6]	C	T	1.089e^-4	0.623	DOWNSTREAM CG4393 INTERGENIC
3L	18949583	3L_18949583_SNP [dm3] 3L_18956483_SNP [dm6]	T	A	1.094e^-4	0.623	INTERGENIC
2L	20330061	2L_20330061_SNP [dm3] 2L_20330061_SNP [dm6]	T	G	1.098e^-4	0.623	INTRON spir
X	15869990	X_15869990_SNP [dm3] X_15975957_SNP [dm6]	T	A	1.099e^-4	0.623	UPSTREAM CG42766 INTRON Or13a
3R	26578366	3R_26578366_SNP [dm3] 3R_30752644_SNP [dm6]	T	A	1.099e^-4	0.623	INTERGENIC
2R	14542290	2R_14542290_SNP [dm3] 2R_18654785_SNP [dm6]	A	G	1.100e^-4	0.623	INTRON SP2637	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7477744	3L_7477744_SNP [dm3] 3L_7484644_SNP [dm6]	G	A	1.104e^-4	0.623	INTERGENIC
3R	14837845	3R_14837845_SNP [dm3] 3R_19012123_SNP [dm6]	T	C	1.112e^-4	0.623	INTRON gukh	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	21286317	3R_21286317_SNP [dm3] 3R_25460595_SNP [dm6]	T	A	1.115e^-4	0.623	INTRON Fur1
3R	16534434	3R_16534434_SNP [dm3] 3R_20708712_SNP [dm6]	T	C	1.122e^-4	0.623	INTRON Oamb
3L	12151504	3L_12151504_SNP [dm3] 3L_12158404_SNP [dm6]	G	T	1.128e^-4	0.623	INTRON CG9760	TF binding site mE1_TFBS_cad
3R	14837723	3R_14837723_DEL [dm3] 3R_19012001_DEL [dm6]	ATAAA	A	1.132e^-4	0.623	INTRON gukh	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_inv
3L	17280378	3L_17280378_SNP [dm3] 3L_17287278_SNP [dm6]	C	T	1.135e^-4	0.623	INTERGENIC
3L	7854301	3L_7854301_SNP [dm3] 3L_7861201_SNP [dm6]	A	C	1.138e^-4	0.623	INTRON Pdp1
2R	10475377	2R_10475377_SNP [dm3] 2R_14587872_SNP [dm6]	A	T	1.140e^-4	0.623	UTR_3_PRIME ttv
3L	4269802	3L_4269802_INS [dm3] 3L_4269802_INS [dm6]	A	ACCC	1.149e^-4	0.623	INTRON CG1273	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	8055749	2L_8055749_SNP [dm3] 2L_8055749_SNP [dm6]	A	G	1.151e^-4	0.623	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4512570	2L_4512570_SNP [dm3] 2L_4512570_SNP [dm6]	A	G	1.151e^-4	0.623	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6167692	X_6167692_SNP [dm3] X_6273659_SNP [dm6]	C	T	1.152e^-4	0.623	SYNONYMOUS_CODING Spt6	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16504928	3R_16504928_SNP [dm3] 3R_20679206_SNP [dm6]	A	C	1.153e^-4	0.623	DOWNSTREAM CR43452 INTERGENIC
3L	17280234	3L_17280234_SNP [dm3] 3L_17287134_SNP [dm6]	T	G	1.153e^-4	0.623	INTERGENIC
2R	17203805	2R_17203805_SNP [dm3] 2R_21316300_SNP [dm6]	T	G	1.154e^-4	0.623	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	4220700	2R_4220700_SNP [dm3] 2R_8333195_SNP [dm6]	G	A	1.157e^-4	0.623	INTRON pdm3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3R	14437392	3R_14437392_SNP [dm3] 3R_18611670_SNP [dm6]	A	C	1.158e^-4	0.623	INTRON qin & 1 other
3L	6777671	3L_6777671_SNP [dm3] 3L_6784571_SNP [dm6]	T	G	1.161e^-4	0.623	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2L	13913633	2L_13913633_SNP [dm3] 2L_13913633_SNP [dm6]	A	G	1.169e^-4	0.623	DOWNSTREAM Acyp INTERGENIC	TF binding site mE1_TFBS_cad
2L	21674760	2L_21674760_SNP [dm3] 2L_21674760_SNP [dm6]	G	A	1.171e^-4	0.623	INTRON CG2225	transposable element FlyBase
3R	10514783	3R_10514783_SNP [dm3] 3R_14689061_SNP [dm6]	C	A	1.171e^-4	0.623	INTRON Meltrin
3L	6291711	3L_6291711_SNP [dm3] 3L_6298611_SNP [dm6]	T	C	1.173e^-4	0.623	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26070383	3R_26070383_SNP [dm3] 3R_30244661_SNP [dm6]	A	C	1.174e^-4	0.623	SYNONYMOUS_CODING CG9733	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2005723	3L_2005723_SNP [dm3] 3L_2005723_SNP [dm6]	G	A	1.178e^-4	0.623	UPSTREAM CG42841 INTERGENIC
2R	9385610	2R_9385610_SNP [dm3] 2R_13498105_SNP [dm6]	T	A	1.179e^-4	0.623	INTRON drk
2L	16538561	2L_16538561_DEL [dm3] 2L_16538561_DEL [dm6]	GAG	A	1.181e^-4	0.623	INTERGENIC
3L	7852135	3L_7852135_SNP [dm3] 3L_7859035_SNP [dm6]	G	C	1.185e^-4	0.623	INTRON Pdp1
3R	14448353	3R_14448353_SNP [dm3] 3R_18622631_SNP [dm6]	T	A	1.186e^-4	0.623	INTRON qin	TF binding site mE1_TFBS_inv
X	22040675	X_22040675_SNP [dm3] X_22638839_SNP [dm6]	T	A	1.193e^-4	0.623	INTERGENIC
2R	836731	2R_836731_SNP [dm3] 2R_4949226_SNP [dm6]	T	C	1.197e^-4	0.623	INTRON Ir41a	transposable element FlyBase
2L	13911851	2L_13911851_SNP [dm3] 2L_13911851_SNP [dm6]	A	T	1.202e^-4	0.623	UPSTREAM Acyp DOWNSTREAM Ance-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	18223508	2R_18223508_SNP [dm3] 2R_22336003_SNP [dm6]	G	A	1.203e^-4	0.623	INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	17204135	2R_17204135_SNP [dm3] 2R_21316630_SNP [dm6]	C	T	1.204e^-4	0.623	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad
3L	17122283	3L_17122283_SNP [dm3] 3L_17129183_SNP [dm6]	C	A	1.206e^-4	0.623	INTRON Rbp6
3R	24334588	3R_24334588_SNP [dm3] 3R_28508866_SNP [dm6]	T	C	1.212e^-4	0.623	INTRON Dhc98D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6497829	3L_6497829_SNP [dm3] 3L_6504729_SNP [dm6]	G	A	1.226e^-4	0.623	INTRON sfl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10539035	3L_10539035_DEL [dm3] 3L_10545935_DEL [dm6]	TAACTTTTA	T	1.228e^-4	0.623	INTRON A2bp1
3R	24858753	3R_24858753_SNP [dm3] 3R_29033031_SNP [dm6]	C	A	1.229e^-4	0.623	NON_SYNONYMOUS_CODING beta4GalNAcTB UPSTREAM Ssl2 EXON CR45044	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	17183670	2L_17183670_SNP [dm3] 2L_17183670_SNP [dm6]	G	T	1.231e^-4	0.623	DOWNSTREAM CG31750 INTERGENIC
3L	1996808	3L_1996808_SNP [dm3] 3L_1996808_SNP [dm6]	G	A	1.231e^-4	0.623	INTERGENIC
2L	8121006	2L_8121006_SNP [dm3] 2L_8121006_SNP [dm6]	G	A	1.232e^-4	0.623	SYNONYMOUS_CODING mon2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13294934	3L_13294934_SNP [dm3] 3L_13301834_SNP [dm6]	T	A	1.234e^-4	0.623	SYNONYMOUS_CODING SP UPSTREAM CR43911 DOWNSTREAM CR44557
2R	17682936	2R_17682936_SNP [dm3] 2R_21795431_SNP [dm6]	T	A	1.234e^-4	0.623	UPSTREAM CG34204 INTERGENIC
2L	13911853	2L_13911853_SNP [dm3] 2L_13911853_SNP [dm6]	A	G	1.236e^-4	0.623	UPSTREAM Acyp DOWNSTREAM Ance-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	2005740	3L_2005740_SNP [dm3] 3L_2005740_SNP [dm6]	A	C	1.241e^-4	0.623	UPSTREAM CG42841 INTERGENIC
2L	7146815	2L_7146815_SNP [dm3] 2L_7146815_SNP [dm6]	C	T	1.246e^-4	0.623	INTRON Pvf3
3R	21776436	3R_21776436_SNP [dm3] 3R_25950714_SNP [dm6]	A	C	1.249e^-4	0.623	INTRON CCAP-R
3L	7270930	3L_7270930_SNP [dm3] 3L_7277830_SNP [dm6]	C	A	1.249e^-4	0.623	INTRON unc-13-4A
3R	19870635	3R_19870635_SNP [dm3] 3R_24044913_SNP [dm6]	T	C	1.250e^-4	0.623	SYNONYMOUS_CODING Rox8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7469526	3L_7469526_SNP [dm3] 3L_7476426_SNP [dm6]	T	C	1.265e^-4	0.623	DOWNSTREAM CG43292 INTERGENIC
X	15116235	X_15116235_SNP [dm3] X_15222202_SNP [dm6]	T	A	1.279e^-4	0.623	DOWNSTREAM CG43076 INTERGENIC
3L	9367067	3L_9367067_SNP [dm3] 3L_9373967_SNP [dm6]	A	T	1.284e^-4	0.623	UTR_5_PRIME Hsp22 UTR_3_PRIME Hsp67Bb UPSTREAM Hsp22 DOWNSTREAM Hsp67Bb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3R	25395002	3R_25395002_SNP [dm3] 3R_29569280_SNP [dm6]	C	T	1.284e^-4	0.623	INTERGENIC
X	22040677	X_22040677_SNP [dm3] X_22638841_SNP [dm6]	C	A	1.286e^-4	0.623	INTERGENIC
2R	14237917	2R_14237917_INS [dm3] 2R_18350412_INS [dm6]	A	AA	1.293e^-4	0.623	INTRON sbb
3L	5171689	3L_5171689_SNP [dm3] 3L_5178589_SNP [dm6]	A	C	1.296e^-4	0.623	INTRON shep
2R	9600321	2R_9600321_DEL [dm3] 2R_13712816_DEL [dm6]	CAGTGGGTGCTGC...	C	1.298e^-4	0.623	INTRON fas
X	16225284	X_16225284_SNP [dm3] X_16331251_SNP [dm6]	A	T	1.304e^-4	0.623	UPSTREAM CG9919 DOWNSTREAM CG9921 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	5171664	3L_5171664_SNP [dm3] 3L_5178564_SNP [dm6]	A	T	1.309e^-4	0.623	INTRON shep
3L	1996943	3L_1996943_SNP [dm3] 3L_1996943_SNP [dm6]	C	T	1.319e^-4	0.623	INTERGENIC
X	18235923	X_18235923_SNP [dm3] X_18341890_SNP [dm6]	G	A	1.324e^-4	0.623	INTRON CG6123
3R	7866713	3R_7866713_SNP [dm3] 3R_12040991_SNP [dm6]	C	A	1.324e^-4	0.623	INTRON CG14736
3L	2000080	3L_2000080_SNP [dm3] 3L_2000080_SNP [dm6]	C	G	1.325e^-4	0.623	INTERGENIC
3L	7000325	3L_7000325_SNP [dm3] 3L_7007225_SNP [dm6]	T	C	1.326e^-4	0.623	INTRON Mp
3L	4078625	3L_4078625_SNP [dm3] 3L_4078625_SNP [dm6]	A	C	1.330e^-4	0.623	INTRON Gad1
X	8423218	X_8423218_SNP [dm3] X_8529185_SNP [dm6]	T	G	1.332e^-4	0.623	INTRON Nrg & 1 other	TF binding site mE1_TFBS_cad
2L	12011185	2L_12011185_SNP [dm3] 2L_12011185_SNP [dm6]	T	G	1.334e^-4	0.623	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_Dll mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
2L	8251596	2L_8251596_SNP [dm3] 2L_8251596_SNP [dm6]	G	A	1.335e^-4	0.623	INTRON CG8086
X	18870465	X_18870465_SNP [dm3] X_18976432_SNP [dm6]	G	A	1.335e^-4	0.623	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	9025086	X_9025086_SNP [dm3] X_9131053_SNP [dm6]	A	G	1.335e^-4	0.623	INTRON fend	TF binding site BDTNP1_TFBS_dl
2L	12619542	2L_12619542_SNP [dm3] 2L_12619542_SNP [dm6]	T	A	1.336e^-4	0.623	INTRON Ref2 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	7876900	3R_7876900_SNP [dm3] 3R_12051178_SNP [dm6]	G	A	1.339e^-4	0.623	INTERGENIC
2R	6923018	2R_6923018_SNP [dm3] 2R_11035513_SNP [dm6]	G	A	1.340e^-4	0.623	INTRON luna
3L	10534098	3L_10534098_SNP [dm3] 3L_10540998_SNP [dm6]	A	C	1.346e^-4	0.623	INTRON A2bp1
X	20576916	X_20576916_SNP [dm3] X_20705889_SNP [dm6]	A	T	1.348e^-4	0.623	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	3577880	2L_3577880_SNP [dm3] 2L_3577880_SNP [dm6]	A	G	1.353e^-4	0.623	DOWNSTREAM sob INTERGENIC
X	19350360	X_19350360_SNP [dm3] X_19456327_SNP [dm6]	G	C	1.355e^-4	0.623	INTRON kek5
3R	26935611	3R_26935611_SNP [dm3] 3R_31109889_SNP [dm6]	C	G	1.357e^-4	0.623	UPSTREAM CG11318 INTERGENIC
X	3731819	X_3731819_SNP [dm3] X_3837786_SNP [dm6]	A	T	1.359e^-4	0.623	INTRON ec	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	25520296	3R_25520296_SNP [dm3] 3R_29694574_SNP [dm6]	T	C	1.361e^-4	0.623	INTRON dmrt99B
3L	7185082	3L_7185082_SNP [dm3] 3L_7191982_SNP [dm6]	A	G	1.363e^-4	0.623	INTERGENIC
2L	13913634	2L_13913634_SNP [dm3] 2L_13913634_SNP [dm6]	G	A	1.363e^-4	0.623	DOWNSTREAM Acyp INTERGENIC	TF binding site mE1_TFBS_cad
3L	18947080	3L_18947080_SNP [dm3] 3L_18953980_SNP [dm6]	A	G	1.366e^-4	0.623	INTRON CG6836
3L	5600029	3L_5600029_SNP [dm3] 3L_5606929_SNP [dm6]	C	G	1.366e^-4	0.623	UTR_3_PRIME mthl2 DOWNSTREAM Eaf6
3R	19034794	3R_19034794_SNP [dm3] 3R_23209072_SNP [dm6]	C	T	1.368e^-4	0.623	INTRON cnc
3L	10929087	3L_10929087_SNP [dm3] 3L_10935987_SNP [dm6]	C	G	1.368e^-4	0.623	INTERGENIC
3L	2002869	3L_2002869_SNP [dm3] 3L_2002869_SNP [dm6]	G	A	1.369e^-4	0.623	DOWNSTREAM CG42841 INTERGENIC
2R	14767655	2R_14767655_SNP [dm3] 2R_18880150_SNP [dm6]	T	A	1.370e^-4	0.623	INTRON sano
3L	1270024	3L_1270024_SNP [dm3] 3L_1270024_SNP [dm6]	C	T	1.377e^-4	0.623	INTRON CG9134
X	4838207	X_4838207_SNP [dm3] X_4944174_SNP [dm6]	G	T	1.381e^-4	0.623	INTRON Ptp4E
3R	26878414	3R_26878414_SNP [dm3] 3R_31052692_SNP [dm6]	C	T	1.382e^-4	0.623	UTR_3_PRIME l_3_03670 DOWNSTREAM Aph-4	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	17186472	2L_17186472_INS [dm3] 2L_17186472_INS [dm6]	G	GG	1.383e^-4	0.623	INTERGENIC
X	14757352	X_14757352_DEL [dm3] X_14863319_DEL [dm6]	CT	C	1.397e^-4	0.623	UTR_3_PRIME CG9518 INTRON Flo2
2L	21124223	2L_21124223_SNP [dm3] 2L_21124223_SNP [dm6]	C	T	1.402e^-4	0.623	INTRON Nhe2
X	19685728	X_19685728_SNP [dm3] X_19791695_SNP [dm6]	G	A	1.407e^-4	0.623	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	22270866	3R_22270866_SNP [dm3] 3R_26445144_SNP [dm6]	C	A	1.408e^-4	0.623	INTRON tx
X	12274820	X_12274820_SNP [dm3] X_12380787_SNP [dm6]	A	G	1.411e^-4	0.623	INTERGENIC
2R	12807397	2R_12807397_SNP [dm3] 2R_16919892_SNP [dm6]	A	C	1.413e^-4	0.623	INTERGENIC
X	15421972	X_15421972_SNP [dm3] X_15527939_SNP [dm6]	G	A	1.416e^-4	0.623	INTRON Ac13E
3R	26786388	3R_26786388_SNP [dm3] 3R_30960666_SNP [dm6]	A	T	1.416e^-4	0.623	NON_SYNONYMOUS_CODING CG15548
2R	5326573	2R_5326573_SNP [dm3] 2R_9439068_SNP [dm6]	C	A	1.416e^-4	0.623	INTRON ced-6	TF binding site mE1_TFBS_cad
X	11894088	X_11894088_SNP [dm3] X_12000055_SNP [dm6]	C	G	1.417e^-4	0.623	INTRON fw
2R	16814957	2R_16814957_SNP [dm3] 2R_20927452_SNP [dm6]	A	G	1.418e^-4	0.623	INTRON Rx
X	6941067	X_6941067_SNP [dm3] X_7047034_SNP [dm6]	T	C	1.419e^-4	0.623	INTRON CG12541	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	26348166	3R_26348166_SNP [dm3] 3R_30522444_SNP [dm6]	C	G	1.423e^-4	0.623	INTRON jdp
3R	18588006	3R_18588006_SNP [dm3] 3R_22762284_SNP [dm6]	A	C	1.428e^-4	0.623	NON_SYNONYMOUS_CODING CG4723 INTRON Usp12-46 & 1 other
3L	16471811	3L_16471811_SNP [dm3] 3L_16478711_SNP [dm6]	A	C	1.429e^-4	0.623	INTRON CG33158 & 1 other
X	5893676	X_5893676_SNP [dm3] X_5999643_SNP [dm6]	C	T	1.430e^-4	0.623	INTRON CG4766	TF binding site BDTNP1_TFBS_dl
3L	2002607	3L_2002607_DEL [dm3] 3L_2002607_DEL [dm6]	CTAC	C	1.435e^-4	0.623	DOWNSTREAM CG42841 INTERGENIC
3R	17003232	3R_17003232_SNP [dm3] 3R_21177510_SNP [dm6]	G	C	1.435e^-4	0.623	INTRON SNF4Agamma
3L	12101980	3L_12101980_SNP [dm3] 3L_12108880_SNP [dm6]	G	T	1.437e^-4	0.623	INTERGENIC
3L	2001295	3L_2001295_SNP [dm3] 3L_2001295_SNP [dm6]	G	T	1.444e^-4	0.623	INTERGENIC
3L	11315243	3L_11315243_SNP [dm3] 3L_11322143_SNP [dm6]	G	T	1.448e^-4	0.623	UPSTREAM CG6168 INTERGENIC
2L	20525194	2L_20525194_DEL [dm3] 2L_20525194_DEL [dm6]	CC	C	1.451e^-4	0.623	INTERGENIC
X	18826723	X_18826723_INS [dm3] X_18932690_INS [dm6]	T	TT	1.455e^-4	0.623	INTRON CG43759	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	13948333	2L_13948333_SNP [dm3] 2L_13948333_SNP [dm6]	A	G	1.455e^-4	0.623	UPSTREAM CG16884 INTRON Ance-3
X	6476394	X_6476394_SNP [dm3] X_6582361_SNP [dm6]	G	C	1.458e^-4	0.623	SYNONYMOUS_CODING CG34417 INTRON CG34417
3L	10061832	3L_10061832_SNP [dm3] 3L_10068732_SNP [dm6]	A	C	1.458e^-4	0.623	INTRON dpr6
3R	21997473	3R_21997473_SNP [dm3] 3R_26171751_SNP [dm6]	T	A	1.463e^-4	0.623	INTRON CG31323
3L	2005795	3L_2005795_SNP [dm3] 3L_2005795_SNP [dm6]	A	G	1.463e^-4	0.623	UPSTREAM CG42841 INTERGENIC
3L	10439751	3L_10439751_DEL [dm3] 3L_10446651_DEL [dm6]	TT	T	1.464e^-4	0.623	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	1995801	3L_1995801_SNP [dm3] 3L_1995801_SNP [dm6]	G	T	1.468e^-4	0.623	INTERGENIC
X	14661036	X_14661036_SNP [dm3] X_14767003_SNP [dm6]	T	A	1.468e^-4	0.623	INTERGENIC
2L	4779048	2L_4779048_SNP [dm3] 2L_4779048_SNP [dm6]	A	G	1.475e^-4	0.624	INTRON CG15630
2L	2623882	2L_2623882_SNP [dm3] 2L_2623882_SNP [dm6]	G	A	1.480e^-4	0.625	INTERGENIC
3R	25520265	3R_25520265_SNP [dm3] 3R_29694543_SNP [dm6]	G	A	1.489e^-4	0.625	INTRON dmrt99B
3R	18968088	3R_18968088_SNP [dm3] 3R_23142366_SNP [dm6]	G	A	1.495e^-4	0.625	UPSTREAM hh INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	11337220	3L_11337220_SNP [dm3] 3L_11344120_SNP [dm6]	G	A	1.502e^-4	0.625	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA
2R	14200084	2R_14200084_SNP [dm3] 2R_18312579_SNP [dm6]	C	T	1.507e^-4	0.625	DOWNSTREAM Tango8 INTRON sbb	TF binding site mE1_TFBS_HSA
3L	10534584	3L_10534584_SNP [dm3] 3L_10541484_SNP [dm6]	G	T	1.511e^-4	0.625	INTRON A2bp1
2L	3773605	2L_3773605_SNP [dm3] 2L_3773605_SNP [dm6]	T	C	1.512e^-4	0.625	INTRON bowl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	10132771	2L_10132771_SNP [dm3] 2L_10132771_SNP [dm6]	A	G	1.516e^-4	0.625	INTRON CG44153
2R	19398242	2R_19398242_SNP [dm3] 2R_23510719_SNP [dm6]	C	G	1.518e^-4	0.625	DOWNSTREAM CG3906 INTERGENIC
3L	1136992	3L_1136992_SNP [dm3] 3L_1136992_SNP [dm6]	T	A	1.520e^-4	0.625	INTERGENIC
3R	22065129	3R_22065129_SNP [dm3] 3R_26239407_SNP [dm6]	G	A	1.522e^-4	0.625	INTRON CR42745
3R	17013921	3R_17013921_SNP [dm3] 3R_21188199_SNP [dm6]	C	G	1.523e^-4	0.625	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	8885938	3L_8885938_SNP [dm3] 3L_8892838_SNP [dm6]	G	T	1.532e^-4	0.625	INTRON Mcm7	TF binding site mE1_TFBS_chinmo
3L	15759395	3L_15759395_SNP [dm3] 3L_15766295_SNP [dm6]	C	T	1.534e^-4	0.625	INTERGENIC
X	9025151	X_9025151_SNP [dm3] X_9131118_SNP [dm6]	A	T	1.540e^-4	0.625	INTRON fend	TF binding site BDTNP1_TFBS_dl
2L	17304804	2L_17304804_SNP [dm3] 2L_17304804_SNP [dm6]	T	A	1.546e^-4	0.625	INTERGENIC
2L	16870636	2L_16870636_SNP [dm3] 2L_16870636_SNP [dm6]	T	A	1.548e^-4	0.625	EXON CR31781
3R	25520266	3R_25520266_SNP [dm3] 3R_29694544_SNP [dm6]	G	T	1.550e^-4	0.625	INTRON dmrt99B
2R	9680411	2R_9680411_SNP [dm3] 2R_13792906_SNP [dm6]	G	A	1.550e^-4	0.625	DOWNSTREAM CR43811 INTERGENIC
2L	16921227	2L_16921227_SNP [dm3] 2L_16921227_SNP [dm6]	A	C	1.552e^-4	0.625	INTERGENIC
3R	18968168	3R_18968168_SNP [dm3] 3R_23142446_SNP [dm6]	T	G	1.559e^-4	0.625	UPSTREAM hh INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3R	2714046	3R_2714046_SNP [dm3] 3R_6888324_SNP [dm6]	T	A	1.561e^-4	0.625	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	22786565	3R_22786565_SNP [dm3] 3R_26960843_SNP [dm6]	T	C	1.567e^-4	0.625	DOWNSTREAM Tsp97E INTERGENIC
3L	2005736	3L_2005736_SNP [dm3] 3L_2005736_SNP [dm6]	G	A	1.575e^-4	0.625	UPSTREAM CG42841 INTERGENIC
3R	22062588	3R_22062588_SNP [dm3] 3R_26236866_SNP [dm6]	T	G	1.578e^-4	0.625	INTRON CR42745
3R	9770945	3R_9770945_SNP [dm3] 3R_13945223_SNP [dm6]	A	G	1.581e^-4	0.625	SYNONYMOUS_CODING Art6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	17510367	X_17510367_SNP [dm3] X_17616334_SNP [dm6]	C	G	1.585e^-4	0.625	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10904075	3R_10904075_SNP [dm3] 3R_15078353_SNP [dm6]	G	A	1.587e^-4	0.625	DOWNSTREAM CG6974 & 1 other INTERGENIC
3R	22291295	3R_22291295_DEL [dm3] 3R_26465573_DEL [dm6]	TT	T	1.589e^-4	0.625	UTR_5_PRIME CG5455 INTRON CG5455
3L	13924066	3L_13924066_SNP [dm3] 3L_13930966_SNP [dm6]	G	A	1.592e^-4	0.625	NON_SYNONYMOUS_CODING Gl	TF binding site mE1_TFBS_cad
X	12407422	X_12407422_SNP [dm3] X_12513389_SNP [dm6]	A	T	1.600e^-4	0.625	INTRON CG2556	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12411220	2L_12411220_SNP [dm3] 2L_12411220_SNP [dm6]	C	T	1.601e^-4	0.625	INTRON vir-1
2L	5512604	2L_5512604_SNP [dm3] 2L_5512604_SNP [dm6]	C	A	1.603e^-4	0.625	INTERGENIC
3L	7416221	3L_7416221_SNP [dm3] 3L_7423121_SNP [dm6]	T	A	1.604e^-4	0.625	UPSTREAM CG42458 INTERGENIC
3R	20974650	3R_20974650_INS [dm3] 3R_25148928_INS [dm6]	A	AC	1.604e^-4	0.625	INTERGENIC
2L	17809011	2L_17809011_SNP [dm3] 2L_17809011_SNP [dm6]	T	C	1.604e^-4	0.625	INTRON CadN2
2L	13594582	2L_13594582_SNP [dm3] 2L_13594582_SNP [dm6]	G	T	1.606e^-4	0.625	DOWNSTREAM CG9254 INTRON kuz
2L	12011248	2L_12011248_SNP [dm3] 2L_12011248_SNP [dm6]	C	T	1.606e^-4	0.625	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_Dll mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
X	8382326	X_8382326_SNP [dm3] X_8488293_SNP [dm6]	G	A	1.611e^-4	0.625	SYNONYMOUS_CODING otu
2L	17098477	2L_17098477_SNP [dm3] 2L_17098477_SNP [dm6]	G	C	1.612e^-4	0.625	INTERGENIC
X	19797299	X_19797299_SNP [dm3] X_19903266_SNP [dm6]	G	C	1.612e^-4	0.625	NON_SYNONYMOUS_CODING Hers	TF binding site mE1_TFBS_chinmo
3L	2001475	3L_2001475_SNP [dm3] 3L_2001475_SNP [dm6]	A	T	1.625e^-4	0.627	INTERGENIC
2L	1095461	2L_1095461_SNP [dm3] 2L_1095461_SNP [dm6]	A	T	1.626e^-4	0.627	INTRON CG4629
3R	16534389	3R_16534389_SNP [dm3] 3R_20708667_SNP [dm6]	C	T	1.630e^-4	0.627	INTRON Oamb
2L	13594593	2L_13594593_SNP [dm3] 2L_13594593_SNP [dm6]	A	T	1.632e^-4	0.627	DOWNSTREAM CG9254 INTRON kuz
3R	21794397	3R_21794397_SNP [dm3] 3R_25968675_SNP [dm6]	C	A	1.634e^-4	0.627	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	22786559	3R_22786559_SNP [dm3] 3R_26960837_SNP [dm6]	T	C	1.637e^-4	0.627	DOWNSTREAM Tsp97E INTERGENIC
3L	12613399	3L_12613399_SNP [dm3] 3L_12620299_SNP [dm6]	C	T	1.645e^-4	0.628	SYNONYMOUS_CODING caup	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8530809	X_8530809_SNP [dm3] X_8636776_SNP [dm6]	G	A	1.648e^-4	0.628	INTRON oc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	7111439	3L_7111439_SNP [dm3] 3L_7118339_SNP [dm6]	C	T	1.651e^-4	0.628	SYNONYMOUS_CODING form3	TF binding site mE1_TFBS_chinmo
2L	3568544	2L_3568544_SNP [dm3] 2L_3568544_SNP [dm6]	T	A	1.660e^-4	0.628	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
X	12880896	X_12880896_SNP [dm3] X_12986863_SNP [dm6]	G	C	1.675e^-4	0.628	INTERGENIC
3R	22064651	3R_22064651_SNP [dm3] 3R_26238929_SNP [dm6]	A	G	1.679e^-4	0.628	INTRON CR42745
X	20386246	X_20386246_SNP [dm3] X_20515219_SNP [dm6]	A	T	1.688e^-4	0.628	UTR_3_PRIME CG1812 DOWNSTREAM Tak1	TF binding site mE1_TFBS_ftz_f1
3L	2001467	3L_2001467_SNP [dm3] 3L_2001467_SNP [dm6]	G	T	1.692e^-4	0.628	INTERGENIC
2R	18985842	2R_18985842_SNP [dm3] 2R_23098319_SNP [dm6]	T	C	1.694e^-4	0.628	INTERGENIC
2L	12013583	2L_12013583_SNP [dm3] 2L_12013583_SNP [dm6]	T	C	1.694e^-4	0.628	DOWNSTREAM CG6734 EXON CR44588
X	11056995	X_11056995_SNP [dm3] X_11162962_SNP [dm6]	T	C	1.698e^-4	0.628	UTR_3_PRIME Dlic
X	17510358	X_17510358_SNP [dm3] X_17616325_SNP [dm6]	A	G	1.705e^-4	0.628	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9933813	3L_9933813_INS [dm3] 3L_9940713_INS [dm6]	A	TT	1.706e^-4	0.628	INTRON CG34356
3R	18395060	3R_18395060_SNP [dm3] 3R_22569338_SNP [dm6]	G	A	1.708e^-4	0.628	UPSTREAM CG33110 INTERGENIC
3L	9575411	3L_9575411_SNP [dm3] 3L_9582311_SNP [dm6]	T	C	1.716e^-4	0.628	INTRON CG42673
X	3731821	X_3731821_SNP [dm3] X_3837788_SNP [dm6]	T	C	1.728e^-4	0.628	INTRON ec	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	12101979	3L_12101979_SNP [dm3] 3L_12108879_SNP [dm6]	A	G	1.733e^-4	0.628	INTERGENIC
2L	7898833	2L_7898833_SNP [dm3] 2L_7898833_SNP [dm6]	C	T	1.734e^-4	0.628	INTRON Snoo	TF binding site mE1_TFBS_cad
2R	17203523	2R_17203523_SNP [dm3] 2R_21316018_SNP [dm6]	A	C	1.737e^-4	0.628	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	15091025	2R_15091025_SNP [dm3] 2R_19203520_SNP [dm6]	G	A	1.741e^-4	0.628	INTRON hppy
3L	1998661	3L_1998661_SNP [dm3] 3L_1998661_SNP [dm6]	T	C	1.741e^-4	0.628	INTERGENIC
3L	1998949	3L_1998949_SNP [dm3] 3L_1998949_SNP [dm6]	G	C	1.743e^-4	0.628	INTERGENIC
3L	17294891	3L_17294891_SNP [dm3] 3L_17301791_SNP [dm6]	A	T	1.745e^-4	0.628	INTERGENIC
3R	12076920	3R_12076920_SNP [dm3] 3R_16251198_SNP [dm6]	C	G	1.745e^-4	0.628	INTRON tara	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26799106	3R_26799106_SNP [dm3] 3R_30973384_SNP [dm6]	A	T	1.746e^-4	0.628	INTRON 5-HT7
3R	17967963	3R_17967963_SNP [dm3] 3R_22142241_SNP [dm6]	A	T	1.747e^-4	0.628	INTRON SKIP	TF binding site BDTNP1_TFBS_twi
2R	18867673	2R_18867673_SNP [dm3] 2R_22980150_SNP [dm6]	G	T	1.751e^-4	0.628	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16225403	X_16225403_SNP [dm3] X_16331370_SNP [dm6]	T	A	1.752e^-4	0.628	UTR_3_PRIME CG9921 UPSTREAM CG9919	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	9523878	2L_9523878_SNP [dm3] 2L_9523878_SNP [dm6]	A	T	1.754e^-4	0.628	INTRON Oatp30B	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
3R	16708920	3R_16708920_DEL [dm3] 3R_20883198_DEL [dm6]	ATA	GG	1.754e^-4	0.628	INTERGENIC
3R	25960436	3R_25960436_SNP [dm3] 3R_30134714_SNP [dm6]	G	C	1.761e^-4	0.628	UPSTREAM Tpi DOWNSTREAM AdoR INTERGENIC
3L	2005988	3L_2005988_SNP [dm3] 3L_2005988_SNP [dm6]	G	A	1.762e^-4	0.628	UPSTREAM CG42841 INTERGENIC
3R	25181708	3R_25181708_INS [dm3] 3R_29355986_INS [dm6]	A	AGT	1.763e^-4	0.628	DOWNSTREAM CR45547 INTERGENIC
2R	15091010	2R_15091010_SNP [dm3] 2R_19203505_SNP [dm6]	A	G	1.763e^-4	0.628	INTRON hppy
2R	17077150	2R_17077150_SNP [dm3] 2R_21189645_SNP [dm6]	A	G	1.767e^-4	0.628	SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_sens
3L	10237044	3L_10237044_SNP [dm3] 3L_10243944_SNP [dm6]	G	A	1.773e^-4	0.628	NON_SYNONYMOUS_CODING Or67c UPSTREAM CR44541
2R	13279405	2R_13279405_SNP [dm3] 2R_17391900_SNP [dm6]	A	T	1.773e^-4	0.628	UPSTREAM tRNA:CR30233 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad
3L	13019809	3L_13019809_SNP [dm3] 3L_13026709_SNP [dm6]	A	T	1.775e^-4	0.628	UPSTREAM Zmynd10 INTERGENIC
X	12160292	X_12160292_SNP [dm3] X_12266259_SNP [dm6]	C	A	1.778e^-4	0.628	INTRON Ten-a	TF binding site mE1_TFBS_inv
2L	11171461	2L_11171461_SNP [dm3] 2L_11171461_SNP [dm6]	A	G	1.780e^-4	0.628	SYNONYMOUS_CODING Vm32E UPSTREAM Ca-beta INTRON Ca-beta	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	9096307	X_9096307_INS [dm3] X_9202274_INS [dm6]	T	TATTGGATTTTA...	1.780e^-4	0.628	UPSTREAM su_r_ INTERGENIC
3R	14436626	3R_14436626_SNP [dm3] 3R_18610904_SNP [dm6]	G	T	1.786e^-4	0.628	INTRON qin & 1 other
3L	2005729	3L_2005729_SNP [dm3] 3L_2005729_SNP [dm6]	A	T	1.787e^-4	0.628	UPSTREAM CG42841 INTERGENIC
2R	8517284	2R_8517284_SNP [dm3] 2R_12629779_SNP [dm6]	G	A	1.787e^-4	0.628	SYNONYMOUS_CODING muskelin
3R	7866717	3R_7866717_SNP [dm3] 3R_12040995_SNP [dm6]	C	A	1.791e^-4	0.628	INTRON CG14736
3L	18947121	3L_18947121_SNP [dm3] 3L_18954021_SNP [dm6]	A	G	1.800e^-4	0.63	INTRON CG6836
3R	7868332	3R_7868332_SNP [dm3] 3R_12042610_SNP [dm6]	G	A	1.810e^-4	0.631	UTR_3_PRIME CG14736
3L	2948431	3L_2948431_SNP [dm3] 3L_2948431_SNP [dm6]	T	A	1.818e^-4	0.631	INTRON Shab
2R	16708665	2R_16708665_INS [dm3] 2R_20821160_INS [dm6]	T	TT	1.827e^-4	0.631	DOWNSTREAM insc INTERGENIC
2R	12335083	2R_12335083_SNP [dm3] 2R_16447578_SNP [dm6]	G	A	1.831e^-4	0.631	DOWNSTREAM CG15925 INTERGENIC
2L	3859806	2L_3859806_SNP [dm3] 2L_3859806_SNP [dm6]	A	G	1.836e^-4	0.631	INTERGENIC
2L	9515186	2L_9515186_SNP [dm3] 2L_9515186_SNP [dm6]	G	A	1.838e^-4	0.631	INTRON CG33298
3L	6748735	3L_6748735_SNP [dm3] 3L_6755635_SNP [dm6]	T	G	1.841e^-4	0.631	NON_SYNONYMOUS_CODING CG10103 DOWNSTREAM CG32392	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	17016829	3L_17016829_SNP [dm3] 3L_17023729_SNP [dm6]	T	C	1.859e^-4	0.631	UTR_5_PRIME a10 UPSTREAM CG6652 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3L	14370344	3L_14370344_SNP [dm3] 3L_14377244_SNP [dm6]	T	G	1.860e^-4	0.631	INTERGENIC
2L	14236915	2L_14236915_SNP [dm3] 2L_14236915_SNP [dm6]	C	G	1.869e^-4	0.631	DOWNSTREAM CR44728 INTERGENIC
3L	6005261	3L_6005261_SNP [dm3] 3L_6012161_SNP [dm6]	A	T	1.871e^-4	0.631	INTRON PVRAP
X	18859919	X_18859919_SNP [dm3] X_18965886_SNP [dm6]	G	T	1.871e^-4	0.631	INTRON CG43759	TF binding site BDTNP1_TFBS_dl
X	12294757	X_12294757_SNP [dm3] X_12400724_SNP [dm6]	A	C	1.872e^-4	0.631	INTERGENIC
2L	6831075	2L_6831075_SNP [dm3] 2L_6831075_SNP [dm6]	T	G	1.874e^-4	0.631	INTRON sens-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3L	7271614	3L_7271614_SNP [dm3] 3L_7278514_SNP [dm6]	T	C	1.874e^-4	0.631	INTRON unc-13-4A
3R	22786660	3R_22786660_SNP [dm3] 3R_26960938_SNP [dm6]	T	C	1.880e^-4	0.631	DOWNSTREAM Tsp97E INTERGENIC
3R	25595107	3R_25595107_DEL [dm3] 3R_29769385_DEL [dm6]	CACAGATC	C	1.889e^-4	0.631	INTRON kay
X	3803309	X_3803309_SNP [dm3] X_3909276_SNP [dm6]	A	G	1.889e^-4	0.631	INTRON CG42541
3L	12613437	3L_12613437_SNP [dm3] 3L_12620337_SNP [dm6]	C	G	1.893e^-4	0.631	NON_SYNONYMOUS_CODING caup	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21997226	3R_21997226_SNP [dm3] 3R_26171504_SNP [dm6]	C	A	1.910e^-4	0.631	INTRON CG31323
3R	15098354	3R_15098354_SNP [dm3] 3R_19272632_SNP [dm6]	G	T	1.911e^-4	0.631	INTERGENIC
2R	12023859	2R_12023859_SNP [dm3] 2R_16136354_SNP [dm6]	T	C	1.918e^-4	0.631	SYNONYMOUS_CODING spin UTR_3_PRIME spin
3L	6940298	3L_6940298_INS [dm3] 3L_6947198_INS [dm6]	A	ATA	1.934e^-4	0.631	INTRON tow
X	11349829	X_11349829_SNP [dm3] X_11455796_SNP [dm6]	G	A	1.937e^-4	0.631	SYNONYMOUS_CODING HP5	TF binding site mE1_TFBS_sens
2L	14378375	2L_14378375_SNP [dm3] 2L_14378375_SNP [dm6]	A	C	1.939e^-4	0.631	UTR_3_PRIME ppk
2R	1169309	2R_1169309_SNP [dm3] 2R_5281804_SNP [dm6]	C	T	1.943e^-4	0.631	INTRON d4	transposable element FlyBase
3L	1136985	3L_1136985_MNP [dm3] 3L_1136985_MNP [dm6]	TTT	CAC	1.957e^-4	0.631	INTERGENIC
3R	21889502	3R_21889502_SNP [dm3] 3R_26063780_SNP [dm6]	C	A	1.957e^-4	0.631	UPSTREAM CG14551 INTERGENIC
2L	20330020	2L_20330020_SNP [dm3] 2L_20330020_SNP [dm6]	G	A	1.959e^-4	0.631	INTRON spir
3R	23121293	3R_23121293_SNP [dm3] 3R_27295571_SNP [dm6]	T	C	1.960e^-4	0.631	SYNONYMOUS_CODING CG3339	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18536675	2R_18536675_SNP [dm3] 2R_22649170_SNP [dm6]	G	A	1.961e^-4	0.631	UTR_3_PRIME CG3746 UPSTREAM CG34445	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	7708276	3R_7708276_SNP [dm3] 3R_11882554_SNP [dm6]	A	G	1.962e^-4	0.631	UPSTREAM CG31368 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	16173290	2L_16173290_SNP [dm3] 2L_16173290_SNP [dm6]	T	A	1.965e^-4	0.631	INTRON Ca-alpha1D	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	18850532	X_18850532_SNP [dm3] X_18956499_SNP [dm6]	G	A	1.966e^-4	0.631	INTRON CG43759
3R	14437267	3R_14437267_SNP [dm3] 3R_18611545_SNP [dm6]	T	A	1.966e^-4	0.631	INTRON qin & 1 other
2L	4950176	2L_4950176_SNP [dm3] 2L_4950176_SNP [dm6]	G	A	1.970e^-4	0.631	SYNONYMOUS_CODING Jon25Biii UPSTREAM jet	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6774101	3L_6774101_SNP [dm3] 3L_6781001_SNP [dm6]	C	G	1.971e^-4	0.631	INTERGENIC
2R	16276791	2R_16276791_SNP [dm3] 2R_20389286_SNP [dm6]	T	C	1.975e^-4	0.631	INTERGENIC
3L	6786335	3L_6786335_SNP [dm3] 3L_6793235_SNP [dm6]	A	G	1.975e^-4	0.631	UTR_3_PRIME vvl
3L	2005291	3L_2005291_SNP [dm3] 3L_2005291_SNP [dm6]	G	T	1.977e^-4	0.631	UTR_3_PRIME CG42841
X	12750178	X_12750178_SNP [dm3] X_12856145_SNP [dm6]	A	C	1.977e^-4	0.631	SYNONYMOUS_CODING CG4661 INTRON Pde9
2L	15061971	2L_15061971_SNP [dm3] 2L_15061971_SNP [dm6]	T	G	1.977e^-4	0.631	DOWNSTREAM vig INTRON vas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
X	9636639	X_9636639_SNP [dm3] X_9742606_SNP [dm6]	T	C	1.979e^-4	0.631	INTRON Sp1
2L	10051975	2L_10051975_SNP [dm3] 2L_10051975_SNP [dm6]	G	C	1.985e^-4	0.631	DOWNSTREAM CG33301 EXON CR44874
3R	15723694	3R_15723694_SNP [dm3] 3R_19897972_SNP [dm6]	G	A	1.986e^-4	0.631	SYNONYMOUS_CODING CG4733 DOWNSTREAM CG4538 INTRON CG4538
2R	16323414	2R_16323414_SNP [dm3] 2R_20435909_SNP [dm6]	A	T	1.987e^-4	0.631	INTRON CG12484
3R	18644557	3R_18644557_SNP [dm3] 3R_22818835_SNP [dm6]	G	A	1.994e^-4	0.631	INTERGENIC
3R	25181711	3R_25181711_MNP [dm3] 3R_29355989_MNP [dm6]	CTA	TAG	1.996e^-4	0.631	DOWNSTREAM CR45547 INTERGENIC
X	9489261	X_9489261_INS [dm3] X_9595228_INS [dm6]	A	AA	2.004e^-4	0.631	EXON CR45543
X	5765335	X_5765335_SNP [dm3] X_5871302_SNP [dm6]	T	A	2.013e^-4	0.631	INTRON GAA1	TF binding site mE1_TFBS_cad
3L	2005718	3L_2005718_SNP [dm3] 3L_2005718_SNP [dm6]	G	C	2.013e^-4	0.631	UPSTREAM CG42841 INTERGENIC
3R	22786588	3R_22786588_SNP [dm3] 3R_26960866_SNP [dm6]	A	G	2.015e^-4	0.631	DOWNSTREAM Tsp97E INTERGENIC
2R	14022372	2R_14022372_SNP [dm3] 2R_18134867_SNP [dm6]	A	T	2.018e^-4	0.631	UPSTREAM Pcl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2266780	3L_2266780_SNP [dm3] 3L_2266780_SNP [dm6]	A	G	2.020e^-4	0.631	SYNONYMOUS_CODING CG13806 UPSTREAM ecd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	15395739	3L_15395739_SNP [dm3] 3L_15402639_SNP [dm6]	T	A	2.021e^-4	0.631	INTERGENIC
2L	2623817	2L_2623817_SNP [dm3] 2L_2623817_SNP [dm6]	G	C	2.022e^-4	0.631	INTERGENIC
X	2691546	X_2691546_SNP [dm3] X_2797513_SNP [dm6]	C	T	2.022e^-4	0.631	INTRON kirre
2L	19102402	2L_19102402_SNP [dm3] 2L_19102402_SNP [dm6]	C	A	2.023e^-4	0.631	SYNONYMOUS_CODING CG17344 UTR_3_PRIME CG43731 INTRON Lim3
2R	19234388	2R_19234388_SNP [dm3] 2R_23346865_SNP [dm6]	C	T	2.025e^-4	0.631	SYNONYMOUS_CODING CG9863 INTRON CG3502	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21975060	3R_21975060_SNP [dm3] 3R_26149338_SNP [dm6]	T	C	2.027e^-4	0.631	INTERGENIC
2L	5537754	2L_5537754_SNP [dm3] 2L_5537754_SNP [dm6]	G	T	2.033e^-4	0.631	UPSTREAM tomb INTRON CG14015	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	14661041	X_14661041_SNP [dm3] X_14767008_SNP [dm6]	T	A	2.033e^-4	0.631	INTERGENIC
3L	11121264	3L_11121264_SNP [dm3] 3L_11128164_SNP [dm6]	C	G	2.036e^-4	0.631	INTRON CG42575
3L	7593986	3L_7593986_SNP [dm3] 3L_7600886_SNP [dm6]	A	G	2.037e^-4	0.631	INTRON CG33275
3L	6001737	3L_6001737_SNP [dm3] 3L_6008637_SNP [dm6]	T	C	2.042e^-4	0.631	DOWNSTREAM alphaKap4 INTRON PVRAP
3L	7852125	3L_7852125_SNP [dm3] 3L_7859025_SNP [dm6]	T	C	2.043e^-4	0.631	INTRON Pdp1
2L	3340424	2L_3340424_SNP [dm3] 2L_3340424_SNP [dm6]	C	T	2.044e^-4	0.631	INTRON E23
3L	7687819	3L_7687819_DEL [dm3] 3L_7694719_DEL [dm6]	AA	A	2.047e^-4	0.631	INTRON CG32373 & 2 others
X	12407421	X_12407421_SNP [dm3] X_12513388_SNP [dm6]	C	A	2.048e^-4	0.631	INTRON CG2556	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	3698438	2L_3698438_SNP [dm3] 2L_3698438_SNP [dm6]	C	A	2.048e^-4	0.631	UPSTREAM CG3604 DOWNSTREAM CG10031 INTERGENIC
3R	23382898	3R_23382898_DEL [dm3] 3R_27557176_DEL [dm6]	TGT	T	2.054e^-4	0.631	INTRON Klp98A	TF binding site BDTNP1_TFBS_z
3R	26936882	3R_26936882_SNP [dm3] 3R_31111160_SNP [dm6]	G	C	2.062e^-4	0.631	INTERGENIC
X	10468108	X_10468108_SNP [dm3] X_10574075_SNP [dm6]	C	T	2.063e^-4	0.631	INTRON spri
3R	13430168	3R_13430168_DEL [dm3] 3R_17604446_DEL [dm6]	CC	C	2.066e^-4	0.631	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	17203370	2R_17203370_SNP [dm3] 2R_21315865_SNP [dm6]	G	A	2.068e^-4	0.631	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad
2R	17886373	2R_17886373_SNP [dm3] 2R_21998868_SNP [dm6]	G	A	2.071e^-4	0.631	SYNONYMOUS_CODING CG34370
2L	11917682	2L_11917682_SNP [dm3] 2L_11917682_SNP [dm6]	A	G	2.072e^-4	0.631	INTRON Pde1c
2R	19104986	2R_19104986_SNP [dm3] 2R_23217463_SNP [dm6]	C	T	2.073e^-4	0.631	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10854881	2L_10854881_SNP [dm3] 2L_10854881_SNP [dm6]	G	A	2.076e^-4	0.631	UTR_3_PRIME Dnz1 DOWNSTREAM CG43129
2L	10930989	2L_10930989_SNP [dm3] 2L_10930989_SNP [dm6]	A	C	2.077e^-4	0.631	INTRON dpr2
3R	18094880	3R_18094880_SNP [dm3] 3R_22269158_SNP [dm6]	A	G	2.079e^-4	0.631	INTRON SKIP
2R	11735231	2R_11735231_SNP [dm3] 2R_15847726_SNP [dm6]	T	C	2.080e^-4	0.631	UPSTREAM CG8249 & 1 other INTRON tun	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	4274537	3L_4274537_SNP [dm3] 3L_4274537_SNP [dm6]	A	G	2.091e^-4	0.631	SYNONYMOUS_CODING CG1273
3L	21122346	3L_21122346_SNP [dm3] 3L_21129246_SNP [dm6]	G	A	2.092e^-4	0.631	INTRON ko
2L	1619101	2L_1619101_SNP [dm3] 2L_1619101_SNP [dm6]	A	G	2.095e^-4	0.631	DOWNSTREAM CR44603 EXON CR44603
3L	6022531	3L_6022531_SNP [dm3] 3L_6029431_SNP [dm6]	C	A	2.097e^-4	0.631	INTERGENIC
3L	15792507	3L_15792507_SNP [dm3] 3L_15799407_SNP [dm6]	C	T	2.101e^-4	0.631	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7505893	2L_7505893_SNP [dm3] 2L_7505893_SNP [dm6]	C	G	2.101e^-4	0.631	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Kr
3L	6720940	3L_6720940_SNP [dm3] 3L_6727840_SNP [dm6]	G	A	2.103e^-4	0.631	UPSTREAM CR45417 DOWNSTREAM dikar INTERGENIC	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_twi
3L	1406868	3L_1406868_INS [dm3] 3L_1406868_INS [dm6]	G	GTGTGTGT	2.113e^-4	0.632	INTRON Ptp61F
X	16413427	X_16413427_SNP [dm3] X_16519394_SNP [dm6]	G	A	2.114e^-4	0.632	INTRON para
X	6455185	X_6455185_SNP [dm3] X_6561152_SNP [dm6]	G	C	2.121e^-4	0.632	NON_SYNONYMOUS_CODING CG34417
X	17452389	X_17452389_SNP [dm3] X_17558356_SNP [dm6]	T	A	2.123e^-4	0.632	INTRON CG43658
3L	2904392	3L_2904392_SNP [dm3] 3L_2904392_SNP [dm6]	G	A	2.129e^-4	0.632	INTRON Shab
X	8958252	X_8958252_SNP [dm3] X_9064219_SNP [dm6]	T	A	2.134e^-4	0.632	INTRON CG15365
2R	12802816	2R_12802816_SNP [dm3] 2R_16915311_SNP [dm6]	G	T	2.140e^-4	0.632	INTERGENIC
X	9636282	X_9636282_DEL [dm3] X_9742249_DEL [dm6]	GCAAGTTATC	G	2.141e^-4	0.632	INTRON Sp1
3R	18659695	3R_18659695_DEL [dm3] 3R_22833973_DEL [dm6]	GCTTG	G	2.142e^-4	0.632	INTERGENIC
3L	10615944	3L_10615944_SNP [dm3] 3L_10622844_SNP [dm6]	A	G	2.142e^-4	0.632	DOWNSTREAM CG42521 INTERGENIC
3R	14784411	3R_14784411_SNP [dm3] 3R_18958689_SNP [dm6]	C	T	2.144e^-4	0.632	START_GAINED CG42613 UTR_5_PRIME CG42613 UTR_3_PRIME CG43732 INTRON CG42613
3R	27175512	3R_27175512_SNP [dm3] 3R_31349790_SNP [dm6]	C	T	2.161e^-4	0.636	INTRON CG34347	regulatory region REDfly_CRMs
2L	11602181	2L_11602181_SNP [dm3] 2L_11602181_SNP [dm6]	C	T	2.167e^-4	0.637	INTRON kek2
2R	4031122	2R_4031122_SNP [dm3] 2R_8143617_SNP [dm6]	T	C	2.174e^-4	0.638	INTRON Lpin	TF binding site mE1_TFBS_HSA
2L	12588241	2L_12588241_SNP [dm3] 2L_12588241_SNP [dm6]	T	A	2.178e^-4	0.638	INTRON nub
2R	1405874	2R_1405874_SNP [dm3] 2R_5518369_SNP [dm6]	T	C	2.198e^-4	0.639	UPSTREAM CG30438 INTRON CG30438	transposable element FlyBase
3R	20974645	3R_20974645_INS [dm3] 3R_25148923_INS [dm6]	CT	TAG	2.199e^-4	0.639	INTERGENIC
3L	17122290	3L_17122290_SNP [dm3] 3L_17129190_SNP [dm6]	C	A	2.203e^-4	0.639	INTRON Rbp6
2L	20526245	2L_20526245_DEL [dm3] 2L_20526245_DEL [dm6]	TAAACAACATGTATCTAAAA...	T	2.208e^-4	0.639	INTERGENIC
2R	10091071	2R_10091071_SNP [dm3] 2R_14203566_SNP [dm6]	C	T	2.209e^-4	0.639	SYNONYMOUS_CODING Sox15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20095153	3R_20095153_SNP [dm3] 3R_24269431_SNP [dm6]	C	T	2.212e^-4	0.639	INTRON jar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	7377450	3L_7377450_SNP [dm3] 3L_7384350_SNP [dm6]	A	G	2.213e^-4	0.639	SYNONYMOUS_CODING smid
3L	10535797	3L_10535797_SNP [dm3] 3L_10542697_SNP [dm6]	A	G	2.216e^-4	0.639	INTRON A2bp1
X	5702689	X_5702689_SNP [dm3] X_5808656_SNP [dm6]	G	C	2.217e^-4	0.639	UPSTREAM Prosbeta2R1 INTERGENIC
3L	2118135	3L_2118135_SNP [dm3] 3L_2118135_SNP [dm6]	A	G	2.218e^-4	0.639	INTRON zormin
2L	9523884	2L_9523884_SNP [dm3] 2L_9523884_SNP [dm6]	T	A	2.219e^-4	0.639	INTRON Oatp30B	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
3L	2005768	3L_2005768_SNP [dm3] 3L_2005768_SNP [dm6]	C	T	2.227e^-4	0.641	UPSTREAM CG42841 INTERGENIC
X	8171748	X_8171748_SNP [dm3] X_8277715_SNP [dm6]	C	T	2.232e^-4	0.641	UTR_3_PRIME nAChRalpha3
2L	1590705	2L_1590705_SNP [dm3] 2L_1590705_SNP [dm6]	G	A	2.234e^-4	0.641	INTRON haf
X	15116222	X_15116222_SNP [dm3] X_15222189_SNP [dm6]	C	T	2.241e^-4	0.642	DOWNSTREAM CG43076 INTERGENIC
3L	17017271	3L_17017271_SNP [dm3] 3L_17024171_SNP [dm6]	A	T	2.250e^-4	0.642	UPSTREAM Fit2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
X	3803327	X_3803327_SNP [dm3] X_3909294_SNP [dm6]	C	T	2.251e^-4	0.642	INTRON CG42541
X	8781347	X_8781347_SNP [dm3] X_8887314_SNP [dm6]	A	G	2.253e^-4	0.642	INTRON Moe	TF binding site BDTNP1_TFBS_dl
3L	16826581	3L_16826581_SNP [dm3] 3L_16833481_SNP [dm6]	A	G	2.268e^-4	0.644	INTERGENIC
3R	22790291	3R_22790291_SNP [dm3] 3R_26964569_SNP [dm6]	G	A	2.269e^-4	0.644	DOWNSTREAM Gr97a INTRON Tsp97E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	7898870	2L_7898870_SNP [dm3] 2L_7898870_SNP [dm6]	C	G	2.273e^-4	0.644	INTRON Snoo	TF binding site mE1_TFBS_cad
3R	26879883	3R_26879883_SNP [dm3] 3R_31054161_SNP [dm6]	G	A	2.274e^-4	0.644	UTR_3_PRIME dco UPSTREAM l_3_03670	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	7185336	3L_7185336_SNP [dm3] 3L_7192236_SNP [dm6]	T	G	2.278e^-4	0.644	INTERGENIC
3L	1189582	3L_1189582_SNP [dm3] 3L_1189582_SNP [dm6]	T	A	2.287e^-4	0.646	UPSTREAM CG13912 DOWNSTREAM Trh INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3789250	2L_3789250_INS [dm3] 2L_3789250_INS [dm6]	A	AA	2.293e^-4	0.647	UPSTREAM CG3921 INTRON CG3921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8149202	2L_8149202_SNP [dm3] 2L_8149202_SNP [dm6]	G	T	2.299e^-4	0.647	UTR_5_PRIME CG43394 DOWNSTREAM CG31606 INTRON CG8552 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1494295	2L_1494295_SNP [dm3] 2L_1494295_SNP [dm6]	G	A	2.302e^-4	0.647	SYNONYMOUS_CODING CG33128 DOWNSTREAM CG31928	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2118136	3L_2118136_INS [dm3] 3L_2118136_INS [dm6]	C	CCCCAAGAGCAG...	2.304e^-4	0.647	INTRON zormin
3R	4344945	3R_4344945_SNP [dm3] 3R_8519223_SNP [dm6]	G	A	2.310e^-4	0.648	UTR_5_PRIME CG11737 INTRON CG11737
2L	17061965	2L_17061965_SNP [dm3] 2L_17061965_SNP [dm6]	G	T	2.315e^-4	0.648	INTERGENIC
3R	22805115	3R_22805115_SNP [dm3] 3R_26979393_SNP [dm6]	G	T	2.321e^-4	0.648	INTRON CG14253
3L	11110060	3L_11110060_SNP [dm3] 3L_11116960_SNP [dm6]	G	T	2.325e^-4	0.648	NON_SYNONYMOUS_CODING fd68A	TF binding site BDTNP1_TFBS_dl
2R	4240290	2R_4240290_SNP [dm3] 2R_8352785_SNP [dm6]	C	A	2.330e^-4	0.648	INTRON pdm3
X	9096283	X_9096283_SNP [dm3] X_9202250_SNP [dm6]	A	T	2.330e^-4	0.648	UPSTREAM su_r_ INTERGENIC
X	17204036	X_17204036_DEL [dm3] X_17310003_DEL [dm6]	AT	A	2.333e^-4	0.648	INTERGENIC
X	19001902	X_19001902_SNP [dm3] X_19107869_SNP [dm6]	C	T	2.346e^-4	0.65	INTERGENIC	transposable element FlyBase
2L	9281511	2L_9281511_SNP [dm3] 2L_9281511_SNP [dm6]	C	A	2.347e^-4	0.65	INTRON Ggamma30A
3L	21473441	3L_21473441_SNP [dm3] 3L_21480341_SNP [dm6]	A	G	2.352e^-4	0.65	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6532070	3L_6532070_SNP [dm3] 3L_6538970_SNP [dm6]	T	C	2.364e^-4	0.65	INTRON sfl
3R	23504329	3R_23504329_SNP [dm3] 3R_27678607_SNP [dm6]	C	T	2.367e^-4	0.65	SYNONYMOUS_CODING CG5590 UPSTREAM CG12883	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	13687026	3R_13687026_DEL [dm3] 3R_17861304_DEL [dm6]	AA	A	2.377e^-4	0.65	INTRON tinc
3L	19080853	3L_19080853_SNP [dm3] 3L_19087753_SNP [dm6]	A	G	2.380e^-4	0.65	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3R	21889501	3R_21889501_SNP [dm3] 3R_26063779_SNP [dm6]	T	A	2.382e^-4	0.65	UPSTREAM CG14551 INTERGENIC
2L	6243520	2L_6243520_DEL [dm3] 2L_6243520_DEL [dm6]	AA	T	2.384e^-4	0.65	INTERGENIC
3L	5262883	3L_5262883_SNP [dm3] 3L_5269783_SNP [dm6]	G	A	2.394e^-4	0.65	INTRON shep
3L	10065595	3L_10065595_SNP [dm3] 3L_10072495_SNP [dm6]	T	G	2.399e^-4	0.65	DOWNSTREAM dpr6 INTRON dpr6
3L	13769601	3L_13769601_SNP [dm3] 3L_13776501_SNP [dm6]	T	G	2.399e^-4	0.65	INTRON bru-3
3L	1270026	3L_1270026_SNP [dm3] 3L_1270026_SNP [dm6]	C	A	2.400e^-4	0.65	INTRON CG9134
X	13844763	X_13844763_INS [dm3] X_13950730_INS [dm6]	C	ATGGA	2.401e^-4	0.65	INTRON mamo
2R	12174003	2R_12174003_SNP [dm3] 2R_16286498_SNP [dm6]	G	A	2.402e^-4	0.65	NON_SYNONYMOUS_CODING CG9068 UPSTREAM CR43728
3L	10014257	3L_10014257_SNP [dm3] 3L_10021157_SNP [dm6]	G	C	2.404e^-4	0.65	INTRON dpr6
3L	16737255	3L_16737255_SNP [dm3] 3L_16744155_SNP [dm6]	C	T	2.408e^-4	0.65	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	5205390	3L_5205390_DEL [dm3] 3L_5212290_DEL [dm6]	GGGGTTTCTCTGGTTTTTCG...	G	2.420e^-4	0.65	INTRON shep
3R	25107331	3R_25107331_SNP [dm3] 3R_29281609_SNP [dm6]	A	G	2.423e^-4	0.65	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
2L	11198376	2L_11198376_SNP [dm3] 2L_11198376_SNP [dm6]	A	T	2.432e^-4	0.65	INTRON Ca-beta
3R	25520244	3R_25520244_SNP [dm3] 3R_29694522_SNP [dm6]	A	G	2.435e^-4	0.65	INTRON dmrt99B
3R	13026761	3R_13026761_SNP [dm3] 3R_17201039_SNP [dm6]	T	A	2.437e^-4	0.65	INTRON Mur89F
3R	16220170	3R_16220170_SNP [dm3] 3R_20394448_SNP [dm6]	G	C	2.447e^-4	0.65	INTRON Gfrl
3L	12638598	3L_12638598_SNP [dm3] 3L_12645498_SNP [dm6]	T	G	2.451e^-4	0.65	EXON CR32111
3L	12310506	3L_12310506_SNP [dm3] 3L_12317406_SNP [dm6]	T	C	2.451e^-4	0.65	INTERGENIC
3R	16708925	3R_16708925_SNP [dm3] 3R_20883203_SNP [dm6]	A	G	2.452e^-4	0.65	INTERGENIC
2R	15992777	2R_15992777_SNP [dm3] 2R_20105272_SNP [dm6]	C	A	2.459e^-4	0.65	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	1596596	2L_1596596_SNP [dm3] 2L_1596596_SNP [dm6]	A	G	2.462e^-4	0.65	INTRON haf & 1 other
2L	1596604	2L_1596604_SNP [dm3] 2L_1596604_SNP [dm6]	T	G	2.462e^-4	0.65	INTRON haf & 1 other
X	2574722	X_2574722_SNP [dm3] X_2680689_SNP [dm6]	A	T	2.469e^-4	0.65	SYNONYMOUS_CODING HLH3B	TF binding site mE1_TFBS_chinmo
3L	5600068	3L_5600068_INS [dm3] 3L_5606968_INS [dm6]	C	CCGTCACTTCATGATAAATA...	2.473e^-4	0.65	UTR_3_PRIME mthl2 DOWNSTREAM Eaf6
3L	5141130	3L_5141130_SNP [dm3] 3L_5148030_SNP [dm6]	A	G	2.473e^-4	0.65	NON_SYNONYMOUS_CODING Aats-ala-m	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	10886133	2L_10886133_SNP [dm3] 2L_10886133_SNP [dm6]	T	C	2.481e^-4	0.65	UPSTREAM CR44490 INTERGENIC
3L	18949849	3L_18949849_SNP [dm3] 3L_18956749_SNP [dm6]	C	A	2.482e^-4	0.65	INTERGENIC
3L	1898675	3L_1898675_INS [dm3] 3L_1898675_INS [dm6]	A	ATA	2.482e^-4	0.65	INTRON CG1887	TF binding site mE1_TFBS_inv
3R	6828446	3R_6828446_SNP [dm3] 3R_11002724_SNP [dm6]	G	C	2.484e^-4	0.65	INTRON CG34114
3R	9449291	3R_9449291_SNP [dm3] 3R_13623569_SNP [dm6]	G	C	2.488e^-4	0.65	INTERGENIC
2L	16400278	2L_16400278_SNP [dm3] 2L_16400278_SNP [dm6]	T	G	2.493e^-4	0.65	UTR_3_PRIME CG5888
3L	1151762	3L_1151762_SNP [dm3] 3L_1151762_SNP [dm6]	G	C	2.493e^-4	0.65	INTRON bab2
3R	12066021	3R_12066021_SNP [dm3] 3R_16240299_SNP [dm6]	A	G	2.498e^-4	0.65	INTRON tara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	15932295	3L_15932295_SNP [dm3] 3L_15939195_SNP [dm6]	G	A	2.498e^-4	0.65	INTRON Pka-C3
X	9629256	X_9629256_DEL [dm3] X_9735223_DEL [dm6]	CGTGGTGTC	C	2.500e^-4	0.65	INTRON Sp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	15116255	X_15116255_DEL [dm3] X_15222222_DEL [dm6]	ACCCTGTCAGT...	A	2.506e^-4	0.65	DOWNSTREAM CG43076 INTERGENIC
3R	16088159	3R_16088159_SNP [dm3] 3R_20262437_SNP [dm6]	T	C	2.510e^-4	0.65	INTRON cic	TF binding site mE1_TFBS_cad
3L	14370470	3L_14370470_SNP [dm3] 3L_14377370_SNP [dm6]	A	T	2.513e^-4	0.65	INTERGENIC
3L	18949851	3L_18949851_SNP [dm3] 3L_18956751_SNP [dm6]	C	T	2.513e^-4	0.65	INTERGENIC
3L	12001583	3L_12001583_SNP [dm3] 3L_12008483_SNP [dm6]	C	G	2.520e^-4	0.65	UTR_3_PRIME rols DOWNSTREAM CG6928	TF binding site mE1_TFBS_cad
X	6747099	X_6747099_DEL [dm3] X_6853066_DEL [dm6]	TTCTAATTTTGCAACG...	T	2.523e^-4	0.65	UPSTREAM CG14434 INTRON CG14434	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27033325	3R_27033325_SNP [dm3] 3R_31207603_SNP [dm6]	A	T	2.523e^-4	0.65	INTRON chp
3R	14550388	3R_14550388_SNP [dm3] 3R_18724666_SNP [dm6]	T	A	2.525e^-4	0.65	DOWNSTREAM CG7714 INTRON Cha
2L	7901460	2L_7901460_SNP [dm3] 2L_7901460_SNP [dm6]	T	A	2.525e^-4	0.65	INTRON Snoo
3R	25204892	3R_25204892_SNP [dm3] 3R_29379170_SNP [dm6]	G	A	2.531e^-4	0.65	INTRON Ptp99A
3R	13964561	3R_13964561_SNP [dm3] 3R_18138839_SNP [dm6]	C	T	2.534e^-4	0.65	INTERGENIC
X	6073419	X_6073419_SNP [dm3] X_6179386_SNP [dm6]	C	A	2.534e^-4	0.65	INTRON Ca-alpha1T
3L	12270689	3L_12270689_SNP [dm3] 3L_12277589_SNP [dm6]	C	T	2.535e^-4	0.65	UPSTREAM CG10426 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8040275	3L_8040275_SNP [dm3] 3L_8047175_SNP [dm6]	T	C	2.537e^-4	0.65	INTRON nmo	TF binding site mE1_TFBS_cad
3L	9360254	3L_9360254_SNP [dm3] 3L_9367154_SNP [dm6]	A	C	2.538e^-4	0.65	UPSTREAM CG4452 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr
3L	19081966	3L_19081966_SNP [dm3] 3L_19088866_SNP [dm6]	G	A	2.545e^-4	0.65	INTERGENIC
2L	16188691	2L_16188691_SNP [dm3] 2L_16188691_SNP [dm6]	C	G	2.545e^-4	0.65	INTRON Ca-alpha1D
2L	4274166	2L_4274166_SNP [dm3] 2L_4274166_SNP [dm6]	T	C	2.546e^-4	0.65	INTERGENIC
2L	2807295	2L_2807295_SNP [dm3] 2L_2807295_SNP [dm6]	G	A	2.557e^-4	0.65	INTRON daw	TF binding site BDTNP1_TFBS_dl
X	3990968	X_3990968_SNP [dm3] X_4096935_SNP [dm6]	A	C	2.559e^-4	0.65	DOWNSTREAM CG6379 INTERGENIC
3L	18051821	3L_18051821_SNP [dm3] 3L_18058721_SNP [dm6]	T	C	2.566e^-4	0.65	SYNONYMOUS_CODING Eip75B	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22897733	3L_22897733_SNP [dm3] 3L_22904633_SNP [dm6]	T	G	2.569e^-4	0.65	NON_SYNONYMOUS_CODING BoYb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12269381	3L_12269381_SNP [dm3] 3L_12276281_SNP [dm6]	G	C	2.573e^-4	0.65	INTRON CG4300	TF binding site BDTNP1_TFBS_dl
2L	7269171	2L_7269171_SNP [dm3] 2L_7269171_SNP [dm6]	C	G	2.574e^-4	0.65	INTRON Wnt4
3R	25264381	3R_25264381_SNP [dm3] 3R_29438659_SNP [dm6]	T	C	2.574e^-4	0.65	INTRON Ptp99A
2L	17039195	2L_17039195_SNP [dm3] 2L_17039195_SNP [dm6]	T	A	2.587e^-4	0.65	INTERGENIC
2L	12010365	2L_12010365_SNP [dm3] 2L_12010365_SNP [dm6]	T	C	2.589e^-4	0.65	DOWNSTREAM Rh5 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1433605	2L_1433605_SNP [dm3] 2L_1433605_SNP [dm6]	T	A	2.589e^-4	0.65	DOWNSTREAM snRNA:U3:22A INTERGENIC	TF binding site mE1_TFBS_cad
2R	17886392	2R_17886392_SNP [dm3] 2R_21998887_SNP [dm6]	G	A	2.596e^-4	0.65	SYNONYMOUS_CODING CG34370
3R	21216821	3R_21216821_INS [dm3] 3R_25391099_INS [dm6]	A	AG	2.610e^-4	0.65	INTRON Fur1
3R	25182085	3R_25182085_SNP [dm3] 3R_29356363_SNP [dm6]	G	A	2.612e^-4	0.65	EXON CR45547
2R	6894697	2R_6894697_SNP [dm3] 2R_11007192_SNP [dm6]	G	A	2.616e^-4	0.65	INTRON luna
2L	16977490	2L_16977490_SNP [dm3] 2L_16977490_SNP [dm6]	A	C	2.619e^-4	0.65	INTRON beat-IIIb
X	9636301	X_9636301_SNP [dm3] X_9742268_SNP [dm6]	G	A	2.630e^-4	0.65	INTRON Sp1
2R	2811860	2R_2811860_SNP [dm3] 2R_6924355_SNP [dm6]	C	T	2.634e^-4	0.65	SYNONYMOUS_CODING CG3358 DOWNSTREAM mim	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	17235853	3L_17235853_SNP [dm3] 3L_17242753_SNP [dm6]	T	G	2.639e^-4	0.65	UPSTREAM CG6512 & 1 other INTERGENIC	transposable element FlyBase
3L	8803368	3L_8803368_DEL [dm3] 3L_8810268_DEL [dm6]	GTTT	G	2.640e^-4	0.65	UPSTREAM CG13309 DOWNSTREAM CG13308 INTERGENIC	TF binding site mE1_TFBS_cad
3L	2000688	3L_2000688_SNP [dm3] 3L_2000688_SNP [dm6]	A	T	2.642e^-4	0.65	INTERGENIC
2L	10574796	2L_10574796_SNP [dm3] 2L_10574796_SNP [dm6]	A	G	2.644e^-4	0.65	INTRON Trim9
3L	10539087	3L_10539087_SNP [dm3] 3L_10545987_SNP [dm6]	C	A	2.648e^-4	0.65	INTRON A2bp1
2R	19126503	2R_19126503_SNP [dm3] 2R_23238980_SNP [dm6]	A	G	2.650e^-4	0.65	INTERGENIC
2R	13482344	2R_13482344_SNP [dm3] 2R_17594839_SNP [dm6]	A	C	2.654e^-4	0.65	UPSTREAM CG11423 INTRON lack
X	8183037	X_8183037_SNP [dm3] X_8289004_SNP [dm6]	A	C	2.656e^-4	0.65	INTRON nAChRalpha3
2L	14094485	2L_14094485_SNP [dm3] 2L_14094485_SNP [dm6]	A	T	2.661e^-4	0.65	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	23382915	3R_23382915_SNP [dm3] 3R_27557193_SNP [dm6]	C	T	2.661e^-4	0.65	INTRON Klp98A
2L	15104611	2L_15104611_INS [dm3] 2L_15104611_INS [dm6]	C	CCAAC	2.668e^-4	0.65	INTERGENIC
2L	17039196	2L_17039196_SNP [dm3] 2L_17039196_SNP [dm6]	G	A	2.670e^-4	0.65	INTERGENIC
X	18658668	X_18658668_SNP [dm3] X_18764635_SNP [dm6]	A	T	2.670e^-4	0.65	UTR_3_PRIME CCKLR-17D3
3L	11352935	3L_11352935_SNP [dm3] 3L_11359835_SNP [dm6]	G	A	2.672e^-4	0.65	INTERGENIC
2L	17081105	2L_17081105_SNP [dm3] 2L_17081105_SNP [dm6]	T	G	2.678e^-4	0.65	INTERGENIC
2L	10051980	2L_10051980_DEL [dm3] 2L_10051980_DEL [dm6]	ACA	A	2.679e^-4	0.65	DOWNSTREAM CG33301 EXON CR44874
3L	13702490	3L_13702490_DEL [dm3] 3L_13709390_DEL [dm6]	TT	T	2.689e^-4	0.65	INTRON bru-3
3R	22270989	3R_22270989_SNP [dm3] 3R_26445267_SNP [dm6]	G	C	2.691e^-4	0.65	INTRON tx
3L	2005750	3L_2005750_DEL [dm3] 3L_2005750_DEL [dm6]	AGGAAATGCTTA...	A	2.693e^-4	0.65	UPSTREAM CG42841 INTERGENIC
2L	11198377	2L_11198377_SNP [dm3] 2L_11198377_SNP [dm6]	A	T	2.695e^-4	0.65	INTRON Ca-beta
2L	7901546	2L_7901546_SNP [dm3] 2L_7901546_SNP [dm6]	A	G	2.706e^-4	0.65	INTRON Snoo
3R	16928939	3R_16928939_SNP [dm3] 3R_21103217_SNP [dm6]	T	C	2.713e^-4	0.65	INTRON CG5745	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	18478138	X_18478138_INS [dm3] X_18584105_INS [dm6]	A	AGCACAA	2.718e^-4	0.65	INTERGENIC
2L	3666152	2L_3666152_SNP [dm3] 2L_3666152_SNP [dm6]	G	A	2.723e^-4	0.65	INTRON CG34340
3R	9830656	3R_9830656_SNP [dm3] 3R_14004934_SNP [dm6]	G	A	2.723e^-4	0.65	INTRON rdx
3L	15767820	3L_15767820_SNP [dm3] 3L_15774720_SNP [dm6]	G	C	2.724e^-4	0.65	INTERGENIC
3R	14409840	3R_14409840_SNP [dm3] 3R_18584118_SNP [dm6]	T	C	2.726e^-4	0.65	UPSTREAM CG7694 & 1 other INTRON fray & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	11604928	2L_11604928_SNP [dm3] 2L_11604928_SNP [dm6]	A	T	2.727e^-4	0.65	INTRON kek2
2L	9839061	2L_9839061_SNP [dm3] 2L_9839061_SNP [dm6]	T	G	2.729e^-4	0.65	INTRON nAChRalpha6	TF binding site mE1_TFBS_chinmo
3R	25107299	3R_25107299_SNP [dm3] 3R_29281577_SNP [dm6]	T	C	2.730e^-4	0.65	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
3R	26942505	3R_26942505_SNP [dm3] 3R_31116783_SNP [dm6]	A	T	2.731e^-4	0.65	INTERGENIC
X	19749945	X_19749945_SNP [dm3] X_19855912_SNP [dm6]	A	G	2.735e^-4	0.65	SYNONYMOUS_CODING Nup205	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14854656	3R_14854656_SNP [dm3] 3R_19028934_SNP [dm6]	T	A	2.743e^-4	0.65	UTR_5_PRIME P5cr UPSTREAM gatA DOWNSTREAM NP15.6	TF binding site mE1_TFBS_cad
2R	18435786	2R_18435786_DEL [dm3] 2R_22548281_DEL [dm6]	CCACGC	C	2.746e^-4	0.65	INTRON px
3L	17016060	3L_17016060_SNP [dm3] 3L_17022960_SNP [dm6]	C	T	2.747e^-4	0.65	UPSTREAM CG6652 DOWNSTREAM a10 INTERGENIC
X	12160261	X_12160261_SNP [dm3] X_12266228_SNP [dm6]	C	T	2.748e^-4	0.65	INTRON Ten-a	TF binding site mE1_TFBS_inv
3L	6754733	3L_6754733_SNP [dm3] 3L_6761633_SNP [dm6]	C	T	2.749e^-4	0.65	UPSTREAM CG32392 INTRON CG32392
3L	10445036	3L_10445036_SNP [dm3] 3L_10451936_SNP [dm6]	A	C	2.752e^-4	0.65	INTERGENIC
2L	2897090	2L_2897090_SNP [dm3] 2L_2897090_SNP [dm6]	A	G	2.753e^-4	0.65	INTRON lilli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	10834253	2L_10834253_SNP [dm3] 2L_10834253_SNP [dm6]	A	T	2.763e^-4	0.65	INTRON Nos
2L	10671508	2L_10671508_SNP [dm3] 2L_10671508_SNP [dm6]	G	T	2.764e^-4	0.65	DOWNSTREAM CG31871 INTERGENIC
X	7320369	X_7320369_DEL [dm3] X_7426336_DEL [dm6]	ATA	A	2.770e^-4	0.65	UPSTREAM CG32726 INTERGENIC
2L	1095392	2L_1095392_SNP [dm3] 2L_1095392_SNP [dm6]	A	T	2.775e^-4	0.65	INTRON CG4629
3R	19064667	3R_19064667_SNP [dm3] 3R_23238945_SNP [dm6]	C	A	2.776e^-4	0.65	INTRON CG4467	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	1136713	3L_1136713_SNP [dm3] 3L_1136713_SNP [dm6]	A	G	2.788e^-4	0.65	INTERGENIC
3L	17016248	3L_17016248_SNP [dm3] 3L_17023148_SNP [dm6]	A	T	2.790e^-4	0.65	UTR_3_PRIME a10 UPSTREAM CG6652
2L	16098125	2L_16098125_SNP [dm3] 2L_16098125_SNP [dm6]	C	A	2.790e^-4	0.65	INTERGENIC
2R	17204000	2R_17204000_SNP [dm3] 2R_21316495_SNP [dm6]	C	T	2.790e^-4	0.65	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	17204015	2R_17204015_SNP [dm3] 2R_21316510_SNP [dm6]	C	G	2.790e^-4	0.65	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	2003985	3L_2003985_SNP [dm3] 3L_2003985_SNP [dm6]	C	T	2.792e^-4	0.65	INTRON CG42841
X	3730995	X_3730995_SNP [dm3] X_3836962_SNP [dm6]	C	T	2.798e^-4	0.65	INTRON ec	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_Trl
2L	9279998	2L_9279998_SNP [dm3] 2L_9279998_SNP [dm6]	G	T	2.800e^-4	0.65	INTRON Ggamma30A
X	6917326	X_6917326_SNP [dm3] X_7023293_SNP [dm6]	T	C	2.805e^-4	0.65	INTRON CG12541
3L	6786334	3L_6786334_SNP [dm3] 3L_6793234_SNP [dm6]	G	C	2.806e^-4	0.65	UTR_3_PRIME vvl
3R	24858481	3R_24858481_SNP [dm3] 3R_29032759_SNP [dm6]	T	A	2.807e^-4	0.65	UTR_3_PRIME beta4GalNAcTB UPSTREAM Ssl2 EXON CR45044	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D
X	19050931	X_19050931_SNP [dm3] X_19156898_SNP [dm6]	C	T	2.807e^-4	0.65	INTRON RhoGAP18B	TF binding site mE1_TFBS_zfh1
3R	14647030	3R_14647030_SNP [dm3] 3R_18821308_SNP [dm6]	C	T	2.816e^-4	0.65	INTRON CG18208
X	18011742	X_18011742_SNP [dm3] X_18117709_SNP [dm6]	G	T	2.831e^-4	0.65	UPSTREAM wupA INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	22270984	3R_22270984_SNP [dm3] 3R_26445262_SNP [dm6]	A	G	2.842e^-4	0.65	INTRON tx
3R	18644556	3R_18644556_SNP [dm3] 3R_22818834_SNP [dm6]	A	G	2.846e^-4	0.65	INTERGENIC
3L	12120750	3L_12120750_DEL [dm3] 3L_12127650_DEL [dm6]	TT	T	2.846e^-4	0.65	UPSTREAM CG34241 & 1 other INTERGENIC
3R	24334531	3R_24334531_SNP [dm3] 3R_28508809_SNP [dm6]	G	A	2.858e^-4	0.65	INTRON Dhc98D	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2709789	3L_2709789_SNP [dm3] 3L_2709789_SNP [dm6]	G	T	2.859e^-4	0.65	INTRON Fife
2L	17442129	2L_17442129_SNP [dm3] 2L_17442129_SNP [dm6]	G	A	2.859e^-4	0.65	SYNONYMOUS_CODING dl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	13844755	X_13844755_SNP [dm3] X_13950722_SNP [dm6]	T	A	2.860e^-4	0.65	INTRON mamo
3R	27117380	3R_27117380_SNP [dm3] 3R_31291658_SNP [dm6]	G	T	2.862e^-4	0.65	INTERGENIC
3R	21774371	3R_21774371_SNP [dm3] 3R_25948649_SNP [dm6]	A	C	2.874e^-4	0.65	INTRON CCAP-R
3L	15691815	3L_15691815_DEL [dm3] 3L_15698715_DEL [dm6]	TT	T	2.875e^-4	0.65	INTRON comm2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_hkb mE1_TFBS_Trl
2R	17204804	2R_17204804_SNP [dm3] 2R_21317299_SNP [dm6]	T	A	2.877e^-4	0.65	SYNONYMOUS_CODING CG9485 DOWNSTREAM CG33655	TF binding site mE1_TFBS_cad
3R	20593915	3R_20593915_SNP [dm3] 3R_24768193_SNP [dm6]	A	G	2.881e^-4	0.65	EXON CR45650	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	8516182	2R_8516182_SNP [dm3] 2R_12628677_SNP [dm6]	A	G	2.884e^-4	0.65	DOWNSTREAM muskelin & 1 other INTERGENIC
3R	19200966	3R_19200966_INS [dm3] 3R_23375244_INS [dm6]	T	TAAT	2.885e^-4	0.65	DOWNSTREAM CG42828 & 1 other INTERGENIC
3L	12638607	3L_12638607_SNP [dm3] 3L_12645507_SNP [dm6]	G	T	2.885e^-4	0.65	EXON CR32111
3R	25110305	3R_25110305_SNP [dm3] 3R_29284583_SNP [dm6]	G	A	2.885e^-4	0.65	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
X	14154432	X_14154432_SNP [dm3] X_14260399_SNP [dm6]	A	T	2.886e^-4	0.65	UPSTREAM CG1461 INTERGENIC
3L	4802512	3L_4802512_SNP [dm3] 3L_4802512_SNP [dm6]	A	T	2.887e^-4	0.65	DOWNSTREAM CG7509 & 1 other EXON CR44528
3L	6777874	3L_6777874_INS [dm3] 3L_6784774_INS [dm6]	T	TT	2.893e^-4	0.65	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	910629	3L_910629_SNP [dm3] 3L_910629_SNP [dm6]	G	A	2.898e^-4	0.65	SYNONYMOUS_CODING nerfin-1
3L	7601609	3L_7601609_SNP [dm3] 3L_7608509_SNP [dm6]	T	C	2.900e^-4	0.65	INTRON CG33275	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11198379	2L_11198379_SNP [dm3] 2L_11198379_SNP [dm6]	A	G	2.901e^-4	0.65	INTRON Ca-beta
3L	1934496	3L_1934496_SNP [dm3] 3L_1934496_SNP [dm6]	C	A	2.903e^-4	0.65	SYNONYMOUS_CODING CG5687 DOWNSTREAM Dbx
3R	19063820	3R_19063820_SNP [dm3] 3R_23238098_SNP [dm6]	G	A	2.905e^-4	0.65	INTRON CG4467
3L	24219180	3L_24219180_SNP [dm3] 3L_24226080_SNP [dm6]	A	T	2.906e^-4	0.65	INTRON Snap25
2L	6888954	2L_6888954_SNP [dm3] 2L_6888954_SNP [dm6]	T	A	2.908e^-4	0.65	INTRON Nlg2
3L	12852581	3L_12852581_SNP [dm3] 3L_12859481_SNP [dm6]	T	C	2.910e^-4	0.65	NON_SYNONYMOUS_CODING CG32107
2L	18369194	2L_18369194_SNP [dm3] 2L_18369194_SNP [dm6]	T	C	2.913e^-4	0.65	INTRON Fas3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13905636	X_13905636_SNP [dm3] X_14011603_SNP [dm6]	G	A	2.916e^-4	0.65	INTERGENIC
X	15666530	X_15666530_SNP [dm3] X_15772497_SNP [dm6]	C	T	2.917e^-4	0.65	SYNONYMOUS_CODING CG33172 UPSTREAM CG43672
2R	9559008	2R_9559008_SNP [dm3] 2R_13671503_SNP [dm6]	G	A	2.918e^-4	0.65	UTR_3_PRIME CG18368 DOWNSTREAM CR45031 INTRON fas
2L	7505846	2L_7505846_SNP [dm3] 2L_7505846_SNP [dm6]	T	G	2.919e^-4	0.65	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	10539058	3L_10539058_SNP [dm3] 3L_10545958_SNP [dm6]	A	T	2.921e^-4	0.65	INTRON A2bp1
3L	10317645	3L_10317645_SNP [dm3] 3L_10324545_SNP [dm6]	A	T	2.924e^-4	0.65	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	6961048	2R_6961048_SNP [dm3] 2R_11073543_SNP [dm6]	G	A	2.929e^-4	0.65	INTRON luna	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	19200969	3R_19200969_SNP [dm3] 3R_23375247_SNP [dm6]	T	A	2.932e^-4	0.65	DOWNSTREAM CG4393 INTERGENIC
2R	11988025	2R_11988025_SNP [dm3] 2R_16100520_SNP [dm6]	C	G	2.935e^-4	0.65	SYNONYMOUS_CODING CG8414	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2927293	3L_2927293_SNP [dm3] 3L_2927293_SNP [dm6]	A	G	2.938e^-4	0.65	INTRON Shab
3R	26881168	3R_26881168_SNP [dm3] 3R_31055446_SNP [dm6]	T	C	2.944e^-4	0.65	UTR_3_PRIME dco
3L	2993206	3L_2993206_INS [dm3] 3L_2993206_INS [dm6]	G	GG	2.945e^-4	0.65	INTERGENIC
X	9096303	X_9096303_SNP [dm3] X_9202270_SNP [dm6]	C	G	2.949e^-4	0.65	UPSTREAM su_r_ INTERGENIC
3R	13687017	3R_13687017_SNP [dm3] 3R_17861295_SNP [dm6]	A	G	2.951e^-4	0.65	INTRON tinc
2L	3773434	2L_3773434_SNP [dm3] 2L_3773434_SNP [dm6]	T	G	2.954e^-4	0.65	INTRON bowl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	2669768	2L_2669768_SNP [dm3] 2L_2669768_SNP [dm6]	G	T	2.971e^-4	0.652	UPSTREAM Gr23a INTERGENIC
2R	9676070	2R_9676070_SNP [dm3] 2R_13788565_SNP [dm6]	G	A	2.977e^-4	0.652	DOWNSTREAM Cpr50Ca INTERGENIC
3L	7985263	3L_7985263_SNP [dm3] 3L_7992163_SNP [dm6]	T	A	2.979e^-4	0.652	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna
2R	4197605	2R_4197605_SNP [dm3] 2R_8310100_SNP [dm6]	C	A	2.980e^-4	0.652	DOWNSTREAM CR44449 EXON CR44448
3L	10535801	3L_10535801_SNP [dm3] 3L_10542701_SNP [dm6]	A	C	2.986e^-4	0.653	INTRON A2bp1
X	8389648	X_8389648_SNP [dm3] X_8495615_SNP [dm6]	T	G	3.005e^-4	0.653	INTRON CG33181
X	13709002	X_13709002_SNP [dm3] X_13814969_SNP [dm6]	T	C	3.007e^-4	0.653	INTRON Clic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu
2L	20611968	2L_20611968_SNP [dm3] 2L_20611968_SNP [dm6]	G	T	3.011e^-4	0.653	INTRON CR44909
2R	19712761	2R_19712761_SNP [dm3] 2R_23825238_SNP [dm6]	G	C	3.012e^-4	0.653	UPSTREAM CG4763 INTRON CG5549
X	8631659	X_8631659_SNP [dm3] X_8737626_SNP [dm6]	G	T	3.013e^-4	0.653	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
X	19010604	X_19010604_SNP [dm3] X_19116571_SNP [dm6]	T	C	3.017e^-4	0.653	INTERGENIC
3R	8588455	3R_8588455_SNP [dm3] 3R_12762733_SNP [dm6]	A	T	3.019e^-4	0.653	INTRON beat-Vc
2R	16988288	2R_16988288_SNP [dm3] 2R_21100783_SNP [dm6]	A	G	3.022e^-4	0.653	SYNONYMOUS_CODING CG34396	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_inv
3R	22070682	3R_22070682_SNP [dm3] 3R_26244960_SNP [dm6]	T	C	3.027e^-4	0.653	INTRON CR42745
3L	21122228	3L_21122228_SNP [dm3] 3L_21129128_SNP [dm6]	C	T	3.030e^-4	0.653	INTRON ko
2R	18192919	2R_18192919_SNP [dm3] 2R_22305414_SNP [dm6]	G	A	3.032e^-4	0.653	INTRON wdp
2L	8639466	2L_8639466_SNP [dm3] 2L_8639466_SNP [dm6]	T	C	3.033e^-4	0.653	INTRON Sema-1a	TF binding site mE1_TFBS_inv
X	6129289	X_6129289_SNP [dm3] X_6235256_SNP [dm6]	C	T	3.037e^-4	0.653	UTR_3_PRIME CG14446
X	3304322	X_3304322_SNP [dm3] X_3410289_SNP [dm6]	C	A	3.039e^-4	0.653	INTRON CR44999 & 1 other
2L	4546212	2L_4546212_SNP [dm3] 2L_4546212_SNP [dm6]	G	C	3.049e^-4	0.653	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10471830	2L_10471830_SNP [dm3] 2L_10471830_SNP [dm6]	A	G	3.054e^-4	0.653	SYNONYMOUS_CODING RluA-1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14370426	3L_14370426_DEL [dm3] 3L_14377326_DEL [dm6]	TCTTTAAAAAAATAC...	T	3.054e^-4	0.653	INTERGENIC
3R	16438685	3R_16438685_SNP [dm3] 3R_20612963_SNP [dm6]	C	G	3.056e^-4	0.653	SPLICE_SITE_REGION CG15923 DOWNSTREAM bon INTRON CG15923
3R	21535093	3R_21535093_SNP [dm3] 3R_25709371_SNP [dm6]	C	G	3.059e^-4	0.653	NON_SYNONYMOUS_CODING LpR2 INTRON LpR2
X	18862155	X_18862155_INS [dm3] X_18968122_INS [dm6]	A	AATCCTTACAGAGCTGCCCA...	3.059e^-4	0.653	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	4950653	2L_4950653_SNP [dm3] 2L_4950653_SNP [dm6]	C	T	3.061e^-4	0.653	SYNONYMOUS_CODING Jon25Biii UPSTREAM jet	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	4223461	2R_4223461_SNP [dm3] 2R_8335956_SNP [dm6]	C	A	3.078e^-4	0.655	INTRON pdm3
X	9096300	X_9096300_SNP [dm3] X_9202267_SNP [dm6]	T	A	3.086e^-4	0.655	UPSTREAM su_r_ INTERGENIC
2L	12397294	2L_12397294_SNP [dm3] 2L_12397294_SNP [dm6]	G	A	3.091e^-4	0.655	UTR_3_PRIME bru-2 UPSTREAM Pkd2
2L	20228474	2L_20228474_SNP [dm3] 2L_20228474_SNP [dm6]	T	C	3.091e^-4	0.655	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	19956368	3L_19956368_SNP [dm3] 3L_19963268_SNP [dm6]	A	G	3.093e^-4	0.655	INTRON Ac76E
2L	2138468	2L_2138468_SNP [dm3] 2L_2138468_SNP [dm6]	T	C	3.093e^-4	0.655	INTRON tho2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14916601	3R_14916601_SNP [dm3] 3R_19090879_SNP [dm6]	A	T	3.101e^-4	0.655	INTRON cdi
X	5765323	X_5765323_SNP [dm3] X_5871290_SNP [dm6]	T	C	3.102e^-4	0.655	INTRON GAA1	TF binding site mE1_TFBS_cad
3R	6908426	3R_6908426_SNP [dm3] 3R_11082704_SNP [dm6]	C	A	3.104e^-4	0.655	INTERGENIC
2R	9345613	2R_9345613_SNP [dm3] 2R_13458108_SNP [dm6]	A	G	3.112e^-4	0.655	SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9009506	3L_9009506_SNP [dm3] 3L_9016406_SNP [dm6]	C	T	3.133e^-4	0.655	INTRON Doc2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_Kr
3R	7708206	3R_7708206_SNP [dm3] 3R_11882484_SNP [dm6]	A	T	3.134e^-4	0.655	UTR_5_PRIME CG6962 UPSTREAM CG31368	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	23332647	3R_23332647_SNP [dm3] 3R_27506925_SNP [dm6]	G	A	3.143e^-4	0.655	INTERGENIC
3R	25950247	3R_25950247_SNP [dm3] 3R_30124525_SNP [dm6]	C	A	3.146e^-4	0.655	NON_SYNONYMOUS_CODING CG45073	TF binding site mE1_TFBS_inv
3L	12310492	3L_12310492_SNP [dm3] 3L_12317392_SNP [dm6]	T	G	3.147e^-4	0.655	INTERGENIC
3L	3350864	3L_3350864_SNP [dm3] 3L_3350864_SNP [dm6]	T	C	3.148e^-4	0.655	INTRON kst
2L	10132761	2L_10132761_SNP [dm3] 2L_10132761_SNP [dm6]	T	C	3.152e^-4	0.655	INTRON CG44153
3L	17235651	3L_17235651_SNP [dm3] 3L_17242551_SNP [dm6]	A	T	3.157e^-4	0.655	UPSTREAM CG6512 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
2L	18751046	2L_18751046_SNP [dm3] 2L_18751046_SNP [dm6]	T	A	3.157e^-4	0.655	INTERGENIC
3R	22742654	3R_22742654_DEL [dm3] 3R_26916932_DEL [dm6]	CTC	C	3.161e^-4	0.655	INTRON sda	TF binding site BDTNP1_TFBS_twi
3L	2005280	3L_2005280_SNP [dm3] 3L_2005280_SNP [dm6]	C	T	3.166e^-4	0.655	UTR_3_PRIME CG42841
3L	14105845	3L_14105845_SNP [dm3] 3L_14112745_SNP [dm6]	T	A	3.173e^-4	0.655	UTR_3_PRIME Sox21b
X	18861515	X_18861515_SNP [dm3] X_18967482_SNP [dm6]	T	C	3.173e^-4	0.655	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12638615	3L_12638615_SNP [dm3] 3L_12645515_SNP [dm6]	T	G	3.177e^-4	0.655	EXON CR32111
3R	17003475	3R_17003475_SNP [dm3] 3R_21177753_SNP [dm6]	A	G	3.179e^-4	0.655	INTRON SNF4Agamma
2R	17204961	2R_17204961_SNP [dm3] 2R_21317456_SNP [dm6]	T	C	3.181e^-4	0.655	SYNONYMOUS_CODING CG9485 DOWNSTREAM CG33655	TF binding site mE1_TFBS_cad
X	3304330	X_3304330_SNP [dm3] X_3410297_SNP [dm6]	C	A	3.181e^-4	0.655	INTRON CR44999 & 1 other
X	10804647	X_10804647_DEL [dm3] X_10910614_DEL [dm6]	AA	A	3.182e^-4	0.655	INTRON CG43901	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11127856	3L_11127856_SNP [dm3] 3L_11134756_SNP [dm6]	G	C	3.184e^-4	0.655	UPSTREAM CG14143 DOWNSTREAM CG42575 INTERGENIC
X	2142045	X_2142045_SNP [dm3] X_2248012_SNP [dm6]	T	A	3.189e^-4	0.655	SYNONYMOUS_CODING crn DOWNSTREAM Or2a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8937174	X_8937174_SNP [dm3] X_9043141_SNP [dm6]	A	T	3.195e^-4	0.655	INTRON CR43836 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	16173256	2L_16173256_DEL [dm3] 2L_16173256_DEL [dm6]	TCTT	T	3.202e^-4	0.655	INTRON Ca-alpha1D	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	21132689	2R_21132689_SNP [dm3] 2R_25245166_SNP [dm6]	T	A	3.206e^-4	0.655	INTRON CG9380	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr
3R	19245935	3R_19245935_SNP [dm3] 3R_23420213_SNP [dm6]	A	G	3.207e^-4	0.655	INTRON CG4374
3L	6549747	3L_6549747_SNP [dm3] 3L_6556647_SNP [dm6]	C	A	3.211e^-4	0.655	INTRON CG18769
2L	11910409	2L_11910409_SNP [dm3] 2L_11910409_SNP [dm6]	C	G	3.211e^-4	0.655	INTRON Pde1c
2R	17203991	2R_17203991_SNP [dm3] 2R_21316486_SNP [dm6]	C	G	3.218e^-4	0.655	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	9096301	X_9096301_SNP [dm3] X_9202268_SNP [dm6]	T	A	3.222e^-4	0.655	UPSTREAM su_r_ INTERGENIC
3R	21442873	3R_21442873_SNP [dm3] 3R_25617151_SNP [dm6]	A	C	3.226e^-4	0.655	INTRON Npl4	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA
3L	15033210	3L_15033210_SNP [dm3] 3L_15040110_SNP [dm6]	C	T	3.226e^-4	0.655	INTRON Sytbeta	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10203793	3L_10203793_SNP [dm3] 3L_10210693_SNP [dm6]	C	T	3.229e^-4	0.655	INTERGENIC
3L	6761880	3L_6761880_SNP [dm3] 3L_6768780_SNP [dm6]	A	C	3.236e^-4	0.655	INTERGENIC	TF binding site mE1_TFBS_cad
3R	17653527	3R_17653527_SNP [dm3] 3R_21827805_SNP [dm6]	T	C	3.244e^-4	0.655	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	22805206	3R_22805206_SNP [dm3] 3R_26979484_SNP [dm6]	G	A	3.246e^-4	0.655	INTRON CG14253
2R	17412470	2R_17412470_SNP [dm3] 2R_21524965_SNP [dm6]	G	A	3.247e^-4	0.655	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	19055379	3R_19055379_SNP [dm3] 3R_23229657_SNP [dm6]	T	C	3.249e^-4	0.655	UTR_3_PRIME CG4467
X	8956566	X_8956566_SNP [dm3] X_9062533_SNP [dm6]	T	A	3.251e^-4	0.655	INTRON CG15365
3L	7271827	3L_7271827_SNP [dm3] 3L_7278727_SNP [dm6]	T	A	3.254e^-4	0.655	INTRON unc-13-4A
3L	9370993	3L_9370993_DEL [dm3] 3L_9377893_DEL [dm6]	TT	T	3.256e^-4	0.655	UTR_3_PRIME Hsp67Ba UPSTREAM CR43481 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	21793453	3R_21793453_INS [dm3] 3R_25967731_INS [dm6]	T	TAGCCTGCTAA...	3.256e^-4	0.655	DOWNSTREAM boss INTERGENIC
2L	11112457	2L_11112457_SNP [dm3] 2L_11112457_SNP [dm6]	G	A	3.258e^-4	0.655	INTRON CG6201	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27077167	3R_27077167_SNP [dm3] 3R_31251445_SNP [dm6]	A	G	3.264e^-4	0.655	INTRON qless	TF binding site mE1_TFBS_bab1
3L	19045157	3L_19045157_SNP [dm3] 3L_19052057_SNP [dm6]	A	T	3.272e^-4	0.655	UPSTREAM CR44675 & 1 other DOWNSTREAM CG43407 INTERGENIC
3L	1187717	3L_1187717_SNP [dm3] 3L_1187717_SNP [dm6]	G	C	3.279e^-4	0.655	INTERGENIC
3L	12563207	3L_12563207_SNP [dm3] 3L_12570107_SNP [dm6]	C	T	3.281e^-4	0.655	INTRON sowah	TF binding site BDTNP1_TFBS_twi
3L	19081986	3L_19081986_SNP [dm3] 3L_19088886_SNP [dm6]	T	A	3.283e^-4	0.655	INTERGENIC
3L	18753899	3L_18753899_SNP [dm3] 3L_18760799_SNP [dm6]	C	A	3.287e^-4	0.655	INTRON ftz-f1	TF binding site mE1_TFBS_Trl
X	13135364	X_13135364_SNP [dm3] X_13241331_SNP [dm6]	A	T	3.288e^-4	0.655	INTRON mew
3R	12076939	3R_12076939_SNP [dm3] 3R_16251217_SNP [dm6]	A	C	3.289e^-4	0.655	INTRON tara	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11198373	2L_11198373_SNP [dm3] 2L_11198373_SNP [dm6]	A	T	3.292e^-4	0.655	INTRON Ca-beta
3L	10538997	3L_10538997_SNP [dm3] 3L_10545897_SNP [dm6]	T	C	3.295e^-4	0.655	INTRON A2bp1
2R	4917095	2R_4917095_SNP [dm3] 2R_9029590_SNP [dm6]	T	A	3.296e^-4	0.655	INTRON CG8170
3L	7377723	3L_7377723_SNP [dm3] 3L_7384623_SNP [dm6]	G	A	3.300e^-4	0.655	INTRON smid	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10854817	2L_10854817_SNP [dm3] 2L_10854817_SNP [dm6]	A	C	3.304e^-4	0.655	UTR_3_PRIME Dnz1 DOWNSTREAM CG43129
2L	6530796	2L_6530796_SNP [dm3] 2L_6530796_SNP [dm6]	G	A	3.306e^-4	0.655	UPSTREAM eya INTRON eya	TF binding site BDTNP1_TFBS_twi
3R	22074407	3R_22074407_SNP [dm3] 3R_26248685_SNP [dm6]	G	A	3.309e^-4	0.655	INTRON CR42745	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	1615575	2L_1615575_SNP [dm3] 2L_1615575_SNP [dm6]	T	A	3.311e^-4	0.655	INTERGENIC
3L	4058820	3L_4058820_SNP [dm3] 3L_4058820_SNP [dm6]	G	A	3.315e^-4	0.655	UTR_3_PRIME CG1136 UPSTREAM CG18869	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	18948242	3L_18948242_SNP [dm3] 3L_18955142_SNP [dm6]	A	G	3.316e^-4	0.655	INTRON CG6836
3L	2005467	3L_2005467_SNP [dm3] 3L_2005467_SNP [dm6]	C	T	3.318e^-4	0.655	NON_SYNONYMOUS_CODING CG42841
X	3083255	X_3083255_SNP [dm3] X_3189222_SNP [dm6]	T	A	3.320e^-4	0.655	INTRON dnc	TF binding site BDTNP1_TFBS_z
2L	6831076	2L_6831076_SNP [dm3] 2L_6831076_SNP [dm6]	G	A	3.336e^-4	0.655	INTRON sens-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2L	13888761	2L_13888761_SNP [dm3] 2L_13888761_SNP [dm6]	T	A	3.337e^-4	0.655	INTRON CenG1A	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14370465	3L_14370465_SNP [dm3] 3L_14377365_SNP [dm6]	A	T	3.341e^-4	0.655	INTERGENIC
X	14370674	X_14370674_SNP [dm3] X_14476641_SNP [dm6]	T	G	3.343e^-4	0.655	INTRON CG9411
2R	9677870	2R_9677870_SNP [dm3] 2R_13790365_SNP [dm6]	C	G	3.348e^-4	0.655	INTERGENIC
3L	14743485	3L_14743485_SNP [dm3] 3L_14750385_SNP [dm6]	A	T	3.350e^-4	0.655	UTR_3_PRIME Trl DOWNSTREAM Trl INTRON Trl & 1 other
3L	6002343	3L_6002343_SNP [dm3] 3L_6009243_SNP [dm6]	G	A	3.351e^-4	0.655	DOWNSTREAM alphaKap4 INTRON PVRAP	TF binding site mE1_TFBS_sbb
2L	10205365	2L_10205365_SNP [dm3] 2L_10205365_SNP [dm6]	A	T	3.351e^-4	0.655	UTR_3_PRIME CG5734	TF binding site mE1_TFBS_cad
3L	6242731	3L_6242731_SNP [dm3] 3L_6249631_SNP [dm6]	T	A	3.356e^-4	0.655	INTRON Best2
X	17510363	X_17510363_SNP [dm3] X_17616330_SNP [dm6]	C	G	3.356e^-4	0.655	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3796189	3L_3796189_SNP [dm3] 3L_3796189_SNP [dm6]	G	C	3.359e^-4	0.655	INTRON CG32264
2L	1989030	2L_1989030_SNP [dm3] 2L_1989030_SNP [dm6]	A	T	3.360e^-4	0.655	UPSTREAM CR42874 DOWNSTREAM Npc2a INTERGENIC
3L	9360258	3L_9360258_SNP [dm3] 3L_9367158_SNP [dm6]	G	A	3.369e^-4	0.656	UPSTREAM CG4452 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr
2R	17839165	2R_17839165_SNP [dm3] 2R_21951660_SNP [dm6]	G	T	3.383e^-4	0.658	NON_SYNONYMOUS_CODING CG13488 SPLICE_SITE_REGION CG13488 UPSTREAM CG13488
3R	18421053	3R_18421053_SNP [dm3] 3R_22595331_SNP [dm6]	C	A	3.389e^-4	0.659	INTRON Efa6
3L	5373520	3L_5373520_SNP [dm3] 3L_5380420_SNP [dm6]	C	T	3.398e^-4	0.66	SYNONYMOUS_CODING Ir64a
3R	4021856	3R_4021856_SNP [dm3] 3R_8196134_SNP [dm6]	T	C	3.416e^-4	0.661	INTERGENIC
X	14083583	X_14083583_SNP [dm3] X_14189550_SNP [dm6]	T	A	3.420e^-4	0.661	UTR_5_PRIME CG11585
2R	18192915	2R_18192915_SNP [dm3] 2R_22305410_SNP [dm6]	A	T	3.425e^-4	0.661	INTRON wdp
3L	16640319	3L_16640319_SNP [dm3] 3L_16647219_SNP [dm6]	C	A	3.427e^-4	0.661	UTR_5_PRIME Abl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	13094020	3L_13094020_SNP [dm3] 3L_13100920_SNP [dm6]	A	C	3.432e^-4	0.661	DOWNSTREAM CR44554 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9636300	X_9636300_SNP [dm3] X_9742267_SNP [dm6]	G	C	3.438e^-4	0.661	INTRON Sp1
X	2691559	X_2691559_SNP [dm3] X_2797526_SNP [dm6]	A	T	3.440e^-4	0.661	INTRON kirre
2R	12325556	2R_12325556_SNP [dm3] 2R_16438051_SNP [dm6]	G	A	3.441e^-4	0.661	INTERGENIC
3R	13964606	3R_13964606_SNP [dm3] 3R_18138884_SNP [dm6]	A	T	3.447e^-4	0.661	INTERGENIC
3R	18984208	3R_18984208_SNP [dm3] 3R_23158486_SNP [dm6]	T	A	3.447e^-4	0.661	SPLICE_SITE_REGION VhaAC39-2 SYNONYMOUS_CODING VhaAC39-2 UPSTREAM unk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2L	17126825	2L_17126825_DEL [dm3] 2L_17126825_DEL [dm6]	TG	T	3.448e^-4	0.661	UPSTREAM CG31784 INTERGENIC
3L	14434919	3L_14434919_SNP [dm3] 3L_14441819_SNP [dm6]	A	C	3.449e^-4	0.661	INTRON bbg
2R	19116001	2R_19116001_SNP [dm3] 2R_23228478_SNP [dm6]	G	A	3.461e^-4	0.662	INTERGENIC
X	17176192	X_17176192_SNP [dm3] X_17282159_SNP [dm6]	T	C	3.462e^-4	0.662	SYNONYMOUS_CODING CG8664 UPSTREAM CG5445	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	15147525	3L_15147525_SNP [dm3] 3L_15154425_SNP [dm6]	C	A	3.465e^-4	0.662	UTR_3_PRIME Msh6 DOWNSTREAM FucTA
3L	2360416	3L_2360416_SNP [dm3] 3L_2360416_SNP [dm6]	A	G	3.470e^-4	0.663	UPSTREAM CG13801 INTERGENIC
2R	19904743	2R_19904743_SNP [dm3] 2R_24017220_SNP [dm6]	C	A	3.476e^-4	0.663	UPSTREAM CG3121 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	16814970	2R_16814970_SNP [dm3] 2R_20927465_SNP [dm6]	G	C	3.491e^-4	0.664	INTRON Rx
3L	15455420	3L_15455420_SNP [dm3] 3L_15462320_SNP [dm6]	T	C	3.493e^-4	0.664	INTERGENIC
2L	3648966	2L_3648966_SNP [dm3] 2L_3648966_SNP [dm6]	T	A	3.498e^-4	0.664	INTRON for	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	19690688	2L_19690688_SNP [dm3] 2L_19690688_SNP [dm6]	T	C	3.503e^-4	0.664	INTRON Lar
2L	11972984	2L_11972984_DEL [dm3] 2L_11972984_DEL [dm6]	ATA	A	3.503e^-4	0.664	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26878120	3R_26878120_SNP [dm3] 3R_31052398_SNP [dm6]	G	T	3.504e^-4	0.664	NON_SYNONYMOUS_CODING Aph-4 DOWNSTREAM l_3_03670	TF binding site mE1_TFBS_sbb
2R	6449994	2R_6449994_SNP [dm3] 2R_10562489_SNP [dm6]	T	G	3.504e^-4	0.664	INTRON psq	TF binding site BDTNP1_TFBS_twi
3R	25940366	3R_25940366_SNP [dm3] 3R_30114644_SNP [dm6]	T	C	3.507e^-4	0.664	INTRON sima
3L	4274573	3L_4274573_SNP [dm3] 3L_4274573_SNP [dm6]	A	T	3.519e^-4	0.665	SYNONYMOUS_CODING CG1273
3L	12638608	3L_12638608_SNP [dm3] 3L_12645508_SNP [dm6]	A	T	3.524e^-4	0.666	EXON CR32111
3L	12638570	3L_12638570_SNP [dm3] 3L_12645470_SNP [dm6]	G	A	3.531e^-4	0.666	EXON CR32111
3L	8450455	3L_8450455_SNP [dm3] 3L_8457355_SNP [dm6]	C	A	3.532e^-4	0.666	INTRON Gug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
X	21281390	X_21281390_SNP [dm3] X_21410363_SNP [dm6]	G	T	3.556e^-4	0.666	INTRON CR45003
3R	26774663	3R_26774663_SNP [dm3] 3R_30948941_SNP [dm6]	A	C	3.559e^-4	0.666	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	2438029	3L_2438029_SNP [dm3] 3L_2438029_SNP [dm6]	T	A	3.563e^-4	0.666	INTRON CG45186	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6770500	3L_6770500_SNP [dm3] 3L_6777400_SNP [dm6]	T	C	3.564e^-4	0.666	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14192635	2L_14192635_SNP [dm3] 2L_14192635_SNP [dm6]	C	T	3.565e^-4	0.666	INTRON Dyrk2

By genomic position
Variant impact
Gene name

Mitochon_Depth_Cov phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results