DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.002e^-14)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2626 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	16430681	X_16430681_SNP [dm3] X_16536648_SNP [dm6]	T	A	4.201e^-7	0.483	INTERGENIC
3L	1999062	3L_1999062_SNP [dm3] 3L_1999062_SNP [dm6]	T	C	7.229e^-7	0.483	INTERGENIC
2R	2051002	2R_2051002_SNP [dm3] 2R_6163497_SNP [dm6]	A	C	7.723e^-7	0.483	UPSTREAM tRNA:K2:42Ac DOWNSTREAM tRNA:N5:42Aa INTRON EcR	transposable element FlyBase
3L	9355412	3L_9355412_SNP [dm3] 3L_9362312_SNP [dm6]	C	T	1.087e^-6	0.508	SYNONYMOUS_CODING CG34456 DOWNSTREAM Klp67A & 1 other
3L	1999043	3L_1999043_SNP [dm3] 3L_1999043_SNP [dm6]	G	A	1.648e^-6	0.508	INTERGENIC
3R	19200773	3R_19200773_SNP [dm3] 3R_23375051_SNP [dm6]	C	T	1.926e^-6	0.508	DOWNSTREAM CG42828 & 1 other INTERGENIC
3R	19088328	3R_19088328_SNP [dm3] 3R_23262606_SNP [dm6]	G	A	1.934e^-6	0.508	UTR_3_PRIME orb
2L	20942131	2L_20942131_SNP [dm3] 2L_20942131_SNP [dm6]	G	A	2.169e^-6	0.508	INTERGENIC
3L	1999145	3L_1999145_SNP [dm3] 3L_1999145_SNP [dm6]	G	A	2.891e^-6	0.538	INTERGENIC
3L	9304488	3L_9304488_SNP [dm3] 3L_9311388_SNP [dm6]	G	C	3.207e^-6	0.538	INTERGENIC
3L	1997949	3L_1997949_SNP [dm3] 3L_1997949_SNP [dm6]	G	C	3.640e^-6	0.538	INTERGENIC
X	11349981	X_11349981_SNP [dm3] X_11455948_SNP [dm6]	C	A	3.933e^-6	0.538	NON_SYNONYMOUS_CODING HP5	TF binding site mE1_TFBS_sens
3L	2003168	3L_2003168_SNP [dm3] 3L_2003168_SNP [dm6]	C	A	3.975e^-6	0.538	UTR_3_PRIME CG42841
3L	2004455	3L_2004455_DEL [dm3] 3L_2004455_DEL [dm6]	TCG	A	4.076e^-6	0.538	DOWNSTREAM CG42841 INTRON CG42841
3L	2004922	3L_2004922_INS [dm3] 3L_2004922_INS [dm6]	T	TGGTGTGT	4.306e^-6	0.538	DOWNSTREAM CG42841 INTRON CG42841
3L	16471811	3L_16471811_SNP [dm3] 3L_16478711_SNP [dm6]	A	C	5.120e^-6	0.6	INTRON CG33158 & 1 other
3R	13964446	3R_13964446_SNP [dm3] 3R_18138724_SNP [dm6]	A	G	5.623e^-6	0.604	INTERGENIC
2L	10834243	2L_10834243_SNP [dm3] 2L_10834243_SNP [dm6]	C	T	6.189e^-6	0.604	INTRON Nos
2L	1140456	2L_1140456_SNP [dm3] 2L_1140456_SNP [dm6]	C	T	6.579e^-6	0.604	UTR_3_PRIME CG4577
3R	16534452	3R_16534452_SNP [dm3] 3R_20708730_SNP [dm6]	A	T	6.841e^-6	0.604	INTRON Oamb
3L	2004753	3L_2004753_SNP [dm3] 3L_2004753_SNP [dm6]	G	A	7.481e^-6	0.604	DOWNSTREAM CG42841 INTRON CG42841
2L	21065272	2L_21065272_SNP [dm3] 2L_21065272_SNP [dm6]	A	G	7.927e^-6	0.604	INTRON CG9265
2R	17204081	2R_17204081_SNP [dm3] 2R_21316576_SNP [dm6]	G	A	8.320e^-6	0.604	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	3902264	2R_3902264_SNP [dm3] 2R_8014759_SNP [dm6]	T	C	8.574e^-6	0.604	UPSTREAM mir-4981 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
3L	2004308	3L_2004308_SNP [dm3] 3L_2004308_SNP [dm6]	G	C	9.169e^-6	0.604	DOWNSTREAM CG42841 INTRON CG42841
X	3986496	X_3986496_SNP [dm3] X_4092463_SNP [dm6]	C	A	9.600e^-6	0.604	DOWNSTREAM CG43689 INTERGENIC
3R	19034837	3R_19034837_SNP [dm3] 3R_23209115_SNP [dm6]	A	T	9.942e^-6	0.604	INTRON cnc
3L	2005293	3L_2005293_SNP [dm3] 3L_2005293_SNP [dm6]	A	G	1.083e^-5	0.604	UTR_3_PRIME CG42841
3L	5600033	3L_5600033_SNP [dm3] 3L_5606933_SNP [dm6]	A	T	1.090e^-5	0.604	UTR_3_PRIME mthl2 DOWNSTREAM Eaf6
X	12407473	X_12407473_INS [dm3] X_12513440_INS [dm6]	T	TT	1.093e^-5	0.604	INTRON CG2556	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	10834245	2L_10834245_SNP [dm3] 2L_10834245_SNP [dm6]	G	A	1.192e^-5	0.604	INTRON Nos
3L	1999192	3L_1999192_SNP [dm3] 3L_1999192_SNP [dm6]	G	A	1.235e^-5	0.604	INTERGENIC
3L	18947292	3L_18947292_SNP [dm3] 3L_18954192_SNP [dm6]	A	C	1.289e^-5	0.604	INTRON CG6836
3L	2004298	3L_2004298_SNP [dm3] 3L_2004298_SNP [dm6]	T	A	1.335e^-5	0.604	DOWNSTREAM CG42841 INTRON CG42841
3R	25398180	3R_25398180_SNP [dm3] 3R_29572458_SNP [dm6]	A	G	1.348e^-5	0.604	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	25398178	3R_25398178_SNP [dm3] 3R_29572456_SNP [dm6]	A	G	1.359e^-5	0.604	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	10843629	2R_10843629_SNP [dm3] 2R_14956124_SNP [dm6]	G	A	1.364e^-5	0.604	INTRON aPKC
3L	10236960	3L_10236960_SNP [dm3] 3L_10243860_SNP [dm6]	A	T	1.406e^-5	0.604	UPSTREAM CR44541 INTRON Or67c
3R	25463438	3R_25463438_SNP [dm3] 3R_29637716_SNP [dm6]	A	G	1.442e^-5	0.604	INTRON Dop1R2
2L	9839036	2L_9839036_SNP [dm3] 2L_9839036_SNP [dm6]	G	C	1.447e^-5	0.604	INTRON nAChRalpha6
2R	12023859	2R_12023859_SNP [dm3] 2R_16136354_SNP [dm6]	T	C	1.465e^-5	0.604	SYNONYMOUS_CODING spin UTR_3_PRIME spin
3L	1996667	3L_1996667_SNP [dm3] 3L_1996667_SNP [dm6]	A	G	1.485e^-5	0.604	INTERGENIC
3R	14437361	3R_14437361_SNP [dm3] 3R_18611639_SNP [dm6]	T	A	1.585e^-5	0.604	INTRON qin & 1 other
3L	5600035	3L_5600035_SNP [dm3] 3L_5606935_SNP [dm6]	A	T	1.619e^-5	0.604	UTR_3_PRIME mthl2 DOWNSTREAM Eaf6
2L	21065275	2L_21065275_SNP [dm3] 2L_21065275_SNP [dm6]	C	T	1.629e^-5	0.604	INTRON CG9265
3R	14437375	3R_14437375_SNP [dm3] 3R_18611653_SNP [dm6]	T	A	1.631e^-5	0.604	INTRON qin & 1 other
3L	1273290	3L_1273290_SNP [dm3] 3L_1273290_SNP [dm6]	A	T	1.659e^-5	0.604	INTRON CG9134
3L	5600030	3L_5600030_DEL [dm3] 3L_5606930_DEL [dm6]	AC	A	1.692e^-5	0.604	UTR_3_PRIME mthl2 DOWNSTREAM Eaf6
3L	2835271	3L_2835271_SNP [dm3] 3L_2835271_SNP [dm6]	T	A	1.702e^-5	0.604	INTRON CG43444
3L	2000949	3L_2000949_SNP [dm3] 3L_2000949_SNP [dm6]	C	T	1.710e^-5	0.604	INTERGENIC
3R	13685496	3R_13685496_SNP [dm3] 3R_17859774_SNP [dm6]	C	A	1.720e^-5	0.604	INTRON tinc
3L	2835279	3L_2835279_SNP [dm3] 3L_2835279_SNP [dm6]	A	T	1.747e^-5	0.604	INTRON CG43444
3L	2002534	3L_2002534_SNP [dm3] 3L_2002534_SNP [dm6]	T	A	1.759e^-5	0.604	DOWNSTREAM CG42841 INTERGENIC
2L	13237450	2L_13237450_SNP [dm3] 2L_13237450_SNP [dm6]	G	A	1.794e^-5	0.604	INTRON CG5867
3L	5600037	3L_5600037_INS [dm3] 3L_5606937_INS [dm6]	G	GAA	1.829e^-5	0.604	UTR_3_PRIME mthl2 DOWNSTREAM Eaf6
3R	23382864	3R_23382864_DEL [dm3] 3R_27557142_DEL [dm6]	AGA	A	1.829e^-5	0.604	INTRON Klp98A	TF binding site BDTNP1_TFBS_z
3R	25220787	3R_25220787_SNP [dm3] 3R_29395065_SNP [dm6]	C	G	1.852e^-5	0.604	INTRON Ptp99A
2R	9420329	2R_9420329_SNP [dm3] 2R_13532824_SNP [dm6]	A	G	1.990e^-5	0.604	UTR_5_PRIME Vmat INTRON Vmat	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	26024512	3R_26024512_SNP [dm3] 3R_30198790_SNP [dm6]	A	C	2.025e^-5	0.604	NON_SYNONYMOUS_CODING CG9743	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17204093	2R_17204093_SNP [dm3] 2R_21316588_SNP [dm6]	A	C	2.034e^-5	0.604	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	5992565	3L_5992565_SNP [dm3] 3L_5999465_SNP [dm6]	C	A	2.057e^-5	0.604	INTRON PVRAP
3R	20264189	3R_20264189_SNP [dm3] 3R_24438467_SNP [dm6]	A	T	2.068e^-5	0.604	INTRON nAChRalpha1
3R	22067020	3R_22067020_SNP [dm3] 3R_26241298_SNP [dm6]	C	G	2.102e^-5	0.604	INTRON CR42745
2L	9839039	2L_9839039_SNP [dm3] 2L_9839039_SNP [dm6]	A	G	2.138e^-5	0.604	INTRON nAChRalpha6
3L	1996694	3L_1996694_SNP [dm3] 3L_1996694_SNP [dm6]	T	C	2.149e^-5	0.604	INTERGENIC
3R	16534400	3R_16534400_SNP [dm3] 3R_20708678_SNP [dm6]	G	A	2.149e^-5	0.604	INTRON Oamb
X	6157570	X_6157570_SNP [dm3] X_6263537_SNP [dm6]	T	G	2.190e^-5	0.604	INTRON schlank
3R	18644615	3R_18644615_SNP [dm3] 3R_22818893_SNP [dm6]	G	A	2.216e^-5	0.604	INTERGENIC
2R	11788652	2R_11788652_SNP [dm3] 2R_15901147_SNP [dm6]	G	T	2.251e^-5	0.604	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13769604	3L_13769604_SNP [dm3] 3L_13776504_SNP [dm6]	C	A	2.302e^-5	0.604	INTRON bru-3
2L	9281511	2L_9281511_SNP [dm3] 2L_9281511_SNP [dm6]	C	A	2.313e^-5	0.604	INTRON Ggamma30A
3L	1996616	3L_1996616_SNP [dm3] 3L_1996616_SNP [dm6]	C	G	2.318e^-5	0.604	INTERGENIC
2L	12619533	2L_12619533_SNP [dm3] 2L_12619533_SNP [dm6]	G	A	2.430e^-5	0.608	INTRON Ref2 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	9385622	2R_9385622_SNP [dm3] 2R_13498117_SNP [dm6]	T	A	2.438e^-5	0.608	INTRON drk
3R	19034780	3R_19034780_SNP [dm3] 3R_23209058_SNP [dm6]	C	T	2.440e^-5	0.608	INTRON cnc
3L	11618712	3L_11618712_SNP [dm3] 3L_11625612_SNP [dm6]	C	T	2.498e^-5	0.608	SPLICE_SITE_REGION CG6083 UPSTREAM PCID2 INTRON CG6083
X	13844763	X_13844763_INS [dm3] X_13950730_INS [dm6]	C	ATGGA	2.517e^-5	0.608	INTRON mamo
2R	12807373	2R_12807373_SNP [dm3] 2R_16919868_SNP [dm6]	A	T	2.586e^-5	0.608	INTERGENIC
3L	11121264	3L_11121264_SNP [dm3] 3L_11128164_SNP [dm6]	C	G	2.614e^-5	0.608	INTRON CG42575
3R	16534441	3R_16534441_SNP [dm3] 3R_20708719_SNP [dm6]	C	T	2.635e^-5	0.608	INTRON Oamb
3L	6001607	3L_6001607_SNP [dm3] 3L_6008507_SNP [dm6]	T	C	2.683e^-5	0.608	DOWNSTREAM alphaKap4 INTRON PVRAP
2R	12807372	2R_12807372_SNP [dm3] 2R_16919867_SNP [dm6]	T	A	2.724e^-5	0.608	INTERGENIC
3L	1996691	3L_1996691_SNP [dm3] 3L_1996691_SNP [dm6]	G	C	2.753e^-5	0.608	INTERGENIC
3L	17280352	3L_17280352_SNP [dm3] 3L_17287252_SNP [dm6]	G	A	2.768e^-5	0.608	INTERGENIC
X	17204033	X_17204033_SNP [dm3] X_17310000_SNP [dm6]	A	C	2.860e^-5	0.608	INTERGENIC
3R	14841118	3R_14841118_SNP [dm3] 3R_19015396_SNP [dm6]	T	C	2.879e^-5	0.608	INTRON gukh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	9548009	2R_9548009_DEL [dm3] 2R_13660504_DEL [dm6]	CA	C	3.082e^-5	0.608	DOWNSTREAM CG6209 INTRON fas	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11575868	2R_11575868_SNP [dm3] 2R_15688363_SNP [dm6]	A	G	3.095e^-5	0.608	SYNONYMOUS_CODING Cep89 DOWNSTREAM Ranbp11	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10534765	3L_10534765_SNP [dm3] 3L_10541665_SNP [dm6]	T	C	3.191e^-5	0.608	INTRON A2bp1
3R	24335719	3R_24335719_SNP [dm3] 3R_28509997_SNP [dm6]	T	A	3.233e^-5	0.608	INTRON Dhc98D	TF binding site mE1_TFBS_cad
3R	14437372	3R_14437372_SNP [dm3] 3R_18611650_SNP [dm6]	A	T	3.248e^-5	0.608	INTRON qin & 1 other
X	12407422	X_12407422_SNP [dm3] X_12513389_SNP [dm6]	A	T	3.259e^-5	0.608	INTRON CG2556	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	16870627	2L_16870627_SNP [dm3] 2L_16870627_SNP [dm6]	C	T	3.359e^-5	0.608	EXON CR31781
3L	13769605	3L_13769605_SNP [dm3] 3L_13776505_SNP [dm6]	T	A	3.394e^-5	0.608	INTRON bru-3
X	13844759	X_13844759_SNP [dm3] X_13950726_SNP [dm6]	C	A	3.397e^-5	0.608	INTRON mamo
3R	17003184	3R_17003184_DEL [dm3] 3R_21177462_DEL [dm6]	TGCGTAAGTAAGCTT...	T	3.410e^-5	0.608	INTRON SNF4Agamma
2L	17809011	2L_17809011_SNP [dm3] 2L_17809011_SNP [dm6]	T	C	3.432e^-5	0.608	INTRON CadN2
3L	10014295	3L_10014295_SNP [dm3] 3L_10021195_SNP [dm6]	T	C	3.451e^-5	0.608	INTRON dpr6
3L	10237066	3L_10237066_SNP [dm3] 3L_10243966_SNP [dm6]	C	G	3.514e^-5	0.608	NON_SYNONYMOUS_CODING Or67c UPSTREAM CR44541
3L	3928101	3L_3928101_SNP [dm3] 3L_3928101_SNP [dm6]	G	A	3.535e^-5	0.608	INTRON Eip63F-1
3L	1996662	3L_1996662_SNP [dm3] 3L_1996662_SNP [dm6]	A	G	3.548e^-5	0.608	INTERGENIC
2R	19398242	2R_19398242_SNP [dm3] 2R_23510719_SNP [dm6]	C	G	3.549e^-5	0.608	DOWNSTREAM CG3906 INTERGENIC
3R	25398191	3R_25398191_SNP [dm3] 3R_29572469_SNP [dm6]	G	A	3.555e^-5	0.608	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	10511289	3R_10511289_SNP [dm3] 3R_14685567_SNP [dm6]	G	A	3.573e^-5	0.608	INTRON Meltrin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	14022374	2R_14022374_SNP [dm3] 2R_18134869_SNP [dm6]	G	A	3.609e^-5	0.608	UPSTREAM Pcl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16534434	3R_16534434_SNP [dm3] 3R_20708712_SNP [dm6]	T	C	3.612e^-5	0.608	INTRON Oamb
3L	15932347	3L_15932347_SNP [dm3] 3L_15939247_SNP [dm6]	A	G	3.659e^-5	0.608	INTRON Pka-C3
2R	9659460	2R_9659460_INS [dm3] 2R_13771955_INS [dm6]	C	CAT	3.686e^-5	0.608	INTRON Cpr50Ca
3L	6532070	3L_6532070_SNP [dm3] 3L_6538970_SNP [dm6]	T	C	3.735e^-5	0.608	INTRON sfl
2L	10944390	2L_10944390_SNP [dm3] 2L_10944390_SNP [dm6]	G	C	3.740e^-5	0.608	UPSTREAM CR44493 INTRON dpr2
3L	1997819	3L_1997819_SNP [dm3] 3L_1997819_SNP [dm6]	A	G	3.780e^-5	0.608	INTERGENIC
3L	12102111	3L_12102111_SNP [dm3] 3L_12109011_SNP [dm6]	T	A	3.806e^-5	0.608	INTERGENIC
3L	1173790	3L_1173790_SNP [dm3] 3L_1173790_SNP [dm6]	T	G	3.821e^-5	0.608	SYNONYMOUS_CODING bab2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	19685438	X_19685438_SNP [dm3] X_19791405_SNP [dm6]	C	G	3.856e^-5	0.608	INTERGENIC
3R	19201084	3R_19201084_SNP [dm3] 3R_23375362_SNP [dm6]	C	T	3.862e^-5	0.608	DOWNSTREAM CG4393 INTERGENIC
3R	24336333	3R_24336333_SNP [dm3] 3R_28510611_SNP [dm6]	G	A	3.865e^-5	0.608	SYNONYMOUS_CODING Dhc98D
X	8937158	X_8937158_SNP [dm3] X_9043125_SNP [dm6]	T	G	3.887e^-5	0.608	INTRON CR43836 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	1997139	3L_1997139_SNP [dm3] 3L_1997139_SNP [dm6]	T	C	3.891e^-5	0.608	INTERGENIC
X	13844755	X_13844755_SNP [dm3] X_13950722_SNP [dm6]	T	A	3.913e^-5	0.608	INTRON mamo
2L	16966449	2L_16966449_SNP [dm3] 2L_16966449_SNP [dm6]	G	A	3.962e^-5	0.608	DOWNSTREAM CR45285 INTERGENIC
3R	25398136	3R_25398136_DEL [dm3] 3R_29572414_DEL [dm6]	TT	T	4.014e^-5	0.608	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	24858753	3R_24858753_SNP [dm3] 3R_29033031_SNP [dm6]	C	A	4.050e^-5	0.608	NON_SYNONYMOUS_CODING beta4GalNAcTB UPSTREAM Ssl2 EXON CR45044	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	5273681	3L_5273681_SNP [dm3] 3L_5280581_SNP [dm6]	G	C	4.149e^-5	0.608	INTERGENIC
3R	22786661	3R_22786661_SNP [dm3] 3R_26960939_SNP [dm6]	G	A	4.167e^-5	0.608	DOWNSTREAM Tsp97E INTERGENIC
3L	1997206	3L_1997206_SNP [dm3] 3L_1997206_SNP [dm6]	T	C	4.195e^-5	0.608	INTERGENIC
2L	12619542	2L_12619542_SNP [dm3] 2L_12619542_SNP [dm6]	T	A	4.197e^-5	0.608	INTRON Ref2 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	8937161	X_8937161_SNP [dm3] X_9043128_SNP [dm6]	G	A	4.199e^-5	0.608	INTRON CR43836 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	2001536	3L_2001536_SNP [dm3] 3L_2001536_SNP [dm6]	G	T	4.207e^-5	0.608	INTERGENIC
2R	10475377	2R_10475377_SNP [dm3] 2R_14587872_SNP [dm6]	A	T	4.253e^-5	0.608	UTR_3_PRIME ttv
2R	17204195	2R_17204195_DEL [dm3] 2R_21316690_DEL [dm6]	TT	T	4.263e^-5	0.608	SPLICE_SITE_REGION CG9485 INTRON CG9485	TF binding site mE1_TFBS_cad
X	19685270	X_19685270_SNP [dm3] X_19791237_SNP [dm6]	G	T	4.313e^-5	0.608	INTERGENIC
2L	11171461	2L_11171461_SNP [dm3] 2L_11171461_SNP [dm6]	A	G	4.331e^-5	0.608	SYNONYMOUS_CODING Vm32E UPSTREAM Ca-beta INTRON Ca-beta	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	5197134	3L_5197134_SNP [dm3] 3L_5204034_SNP [dm6]	C	G	4.386e^-5	0.608	INTRON shep
3L	7111439	3L_7111439_SNP [dm3] 3L_7118339_SNP [dm6]	C	T	4.406e^-5	0.608	SYNONYMOUS_CODING form3	TF binding site mE1_TFBS_chinmo
3L	2945474	3L_2945474_SNP [dm3] 3L_2945474_SNP [dm6]	T	C	4.410e^-5	0.608	UTR_3_PRIME Shab INTRON Shab
X	18859778	X_18859778_SNP [dm3] X_18965745_SNP [dm6]	C	G	4.442e^-5	0.608	INTRON CG43759
3L	2003258	3L_2003258_SNP [dm3] 3L_2003258_SNP [dm6]	C	A	4.444e^-5	0.608	UTR_3_PRIME CG42841
3L	17280374	3L_17280374_SNP [dm3] 3L_17287274_SNP [dm6]	T	C	4.504e^-5	0.612	INTERGENIC
3L	9934181	3L_9934181_SNP [dm3] 3L_9941081_SNP [dm6]	G	A	4.555e^-5	0.615	INTRON CG34356	TF binding site BDTNP1_TFBS_hb
3L	5600029	3L_5600029_SNP [dm3] 3L_5606929_SNP [dm6]	C	G	4.592e^-5	0.615	UTR_3_PRIME mthl2 DOWNSTREAM Eaf6
3R	18395060	3R_18395060_SNP [dm3] 3R_22569338_SNP [dm6]	G	A	4.646e^-5	0.616	UPSTREAM CG33110 INTERGENIC
3L	11187867	3L_11187867_SNP [dm3] 3L_11194767_SNP [dm6]	C	T	4.744e^-5	0.616	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi
2R	2051006	2R_2051006_DEL [dm3] 2R_6163501_DEL [dm6]	AA	A	4.777e^-5	0.616	UPSTREAM tRNA:K2:42Ac DOWNSTREAM tRNA:N5:42Aa INTRON EcR	transposable element FlyBase
3L	5197517	3L_5197517_SNP [dm3] 3L_5204417_SNP [dm6]	C	A	4.805e^-5	0.616	INTRON shep
3L	5600068	3L_5600068_INS [dm3] 3L_5606968_INS [dm6]	C	CCGTCACTTCATGATAAATA...	4.816e^-5	0.616	UTR_3_PRIME mthl2 DOWNSTREAM Eaf6
3L	5603479	3L_5603479_SNP [dm3] 3L_5610379_SNP [dm6]	A	T	4.849e^-5	0.616	INTERGENIC
3L	2004628	3L_2004628_SNP [dm3] 3L_2004628_SNP [dm6]	A	G	4.864e^-5	0.616	DOWNSTREAM CG42841 INTRON CG42841
X	2670126	X_2670126_SNP [dm3] X_2776093_SNP [dm6]	T	G	4.931e^-5	0.616	INTRON kirre
3R	27022990	3R_27022990_SNP [dm3] 3R_31197268_SNP [dm6]	A	G	4.940e^-5	0.616	INTRON CG1544	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	3439380	3L_3439380_SNP [dm3] 3L_3439380_SNP [dm6]	C	A	4.960e^-5	0.616	INTRON eIF5B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	3439389	3L_3439389_SNP [dm3] 3L_3439389_SNP [dm6]	C	T	4.991e^-5	0.616	INTRON eIF5B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	18870465	X_18870465_SNP [dm3] X_18976432_SNP [dm6]	G	A	5.022e^-5	0.616	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	10671528	2L_10671528_SNP [dm3] 2L_10671528_SNP [dm6]	A	T	5.056e^-5	0.616	DOWNSTREAM CG31871 INTERGENIC
X	10807640	X_10807640_DEL [dm3] X_10913607_DEL [dm6]	TATGT	T	5.074e^-5	0.616	INTRON CG43901
2L	12411220	2L_12411220_SNP [dm3] 2L_12411220_SNP [dm6]	C	T	5.107e^-5	0.616	INTRON vir-1
X	15171514	X_15171514_SNP [dm3] X_15277481_SNP [dm6]	T	A	5.121e^-5	0.616	INTERGENIC
X	20576916	X_20576916_SNP [dm3] X_20705889_SNP [dm6]	A	T	5.192e^-5	0.62	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	9638216	2R_9638216_SNP [dm3] 2R_13750711_SNP [dm6]	A	G	5.272e^-5	0.621	INTERGENIC
X	2670124	X_2670124_SNP [dm3] X_2776091_SNP [dm6]	A	T	5.275e^-5	0.621	INTRON kirre
3R	16058583	3R_16058583_SNP [dm3] 3R_20232861_SNP [dm6]	G	A	5.327e^-5	0.621	INTRON Nlg4
3R	13685535	3R_13685535_SNP [dm3] 3R_17859813_SNP [dm6]	C	T	5.361e^-5	0.621	INTRON tinc
X	16632547	X_16632547_SNP [dm3] X_16738514_SNP [dm6]	A	G	5.362e^-5	0.621	NON_SYNONYMOUS_CODING TwdlZ INTRON CG9634	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	2001857	3L_2001857_SNP [dm3] 3L_2001857_SNP [dm6]	G	C	5.439e^-5	0.626	INTERGENIC
X	5765350	X_5765350_SNP [dm3] X_5871317_SNP [dm6]	T	A	5.574e^-5	0.637	INTRON GAA1	TF binding site mE1_TFBS_cad
3L	17235726	3L_17235726_SNP [dm3] 3L_17242626_SNP [dm6]	T	A	5.671e^-5	0.642	UPSTREAM CG6512 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA transposable element FlyBase
3L	4057796	3L_4057796_SNP [dm3] 3L_4057796_SNP [dm6]	A	T	5.687e^-5	0.642	SYNONYMOUS_CODING CG1136	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16534389	3R_16534389_SNP [dm3] 3R_20708667_SNP [dm6]	C	T	5.795e^-5	0.647	INTRON Oamb
2L	16921207	2L_16921207_SNP [dm3] 2L_16921207_SNP [dm6]	C	T	5.796e^-5	0.647	INTERGENIC
3L	9355322	3L_9355322_SNP [dm3] 3L_9362222_SNP [dm6]	G	A	5.873e^-5	0.65	SYNONYMOUS_CODING CG34456 DOWNSTREAM Klp67A & 1 other
3R	17967979	3R_17967979_SNP [dm3] 3R_22142257_SNP [dm6]	T	A	5.894e^-5	0.65	INTRON SKIP	TF binding site BDTNP1_TFBS_twi
2L	3577880	2L_3577880_SNP [dm3] 2L_3577880_SNP [dm6]	A	G	5.923e^-5	0.65	DOWNSTREAM sob INTERGENIC
3R	21835312	3R_21835312_DEL [dm3] 3R_26009590_DEL [dm6]	CAGGCC	C	5.966e^-5	0.65	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_jumu mE1_TFBS_sens
2R	4240290	2R_4240290_SNP [dm3] 2R_8352785_SNP [dm6]	C	A	6.073e^-5	0.65	INTRON pdm3
3L	1189582	3L_1189582_SNP [dm3] 3L_1189582_SNP [dm6]	T	A	6.074e^-5	0.65	UPSTREAM CG13912 DOWNSTREAM Trh INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8517284	2R_8517284_SNP [dm3] 2R_12629779_SNP [dm6]	G	A	6.147e^-5	0.65	SYNONYMOUS_CODING muskelin
2R	3902532	2R_3902532_SNP [dm3] 2R_8015027_SNP [dm6]	T	C	6.155e^-5	0.65	UPSTREAM mir-4981 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1996345	3L_1996345_SNP [dm3] 3L_1996345_SNP [dm6]	C	T	6.179e^-5	0.65	INTERGENIC
3L	17235725	3L_17235725_SNP [dm3] 3L_17242625_SNP [dm6]	C	G	6.212e^-5	0.65	UPSTREAM CG6512 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA transposable element FlyBase
2R	9680411	2R_9680411_SNP [dm3] 2R_13792906_SNP [dm6]	G	A	6.272e^-5	0.65	DOWNSTREAM CR43811 INTERGENIC
3R	9372936	3R_9372936_SNP [dm3] 3R_13547214_SNP [dm6]	C	T	6.352e^-5	0.65	INTERGENIC
2R	17077150	2R_17077150_SNP [dm3] 2R_21189645_SNP [dm6]	A	G	6.363e^-5	0.65	SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_sens
2L	21124223	2L_21124223_SNP [dm3] 2L_21124223_SNP [dm6]	C	T	6.391e^-5	0.65	INTRON Nhe2
X	15421972	X_15421972_SNP [dm3] X_15527939_SNP [dm6]	G	A	6.393e^-5	0.65	INTRON Ac13E
2L	14790095	2L_14790095_DEL [dm3] 2L_14790095_DEL [dm6]	ATCTCCCACTGGGATGCGAA...	A	6.410e^-5	0.65	INTERGENIC
3R	17967972	3R_17967972_SNP [dm3] 3R_22142250_SNP [dm6]	C	T	6.520e^-5	0.65	INTRON SKIP	TF binding site BDTNP1_TFBS_twi
3L	6255689	3L_6255689_SNP [dm3] 3L_6262589_SNP [dm6]	T	C	6.605e^-5	0.65	UTR_5_PRIME ImpL3 DOWNSTREAM CR44522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	3986459	X_3986459_SNP [dm3] X_4092426_SNP [dm6]	T	C	6.606e^-5	0.65	DOWNSTREAM CG43689 INTERGENIC
3R	24858481	3R_24858481_SNP [dm3] 3R_29032759_SNP [dm6]	T	A	6.613e^-5	0.65	UTR_3_PRIME beta4GalNAcTB UPSTREAM Ssl2 EXON CR45044	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D
X	19685530	X_19685530_SNP [dm3] X_19791497_SNP [dm6]	G	C	6.633e^-5	0.65	INTERGENIC
2R	20134857	2R_20134857_SNP [dm3] 2R_24247334_SNP [dm6]	C	T	6.664e^-5	0.65	INTRON nord
3L	17280378	3L_17280378_SNP [dm3] 3L_17287278_SNP [dm6]	C	T	6.718e^-5	0.65	INTERGENIC
X	15956610	X_15956610_SNP [dm3] X_16062577_SNP [dm6]	C	G	6.718e^-5	0.65	SYNONYMOUS_CODING CG12395 DOWNSTREAM Muc14A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	1997143	3L_1997143_SNP [dm3] 3L_1997143_SNP [dm6]	A	T	6.734e^-5	0.65	INTERGENIC
2L	3340556	2L_3340556_SNP [dm3] 2L_3340556_SNP [dm6]	T	C	6.745e^-5	0.65	INTRON E23
3L	17280234	3L_17280234_SNP [dm3] 3L_17287134_SNP [dm6]	T	G	6.786e^-5	0.65	INTERGENIC
X	19685441	X_19685441_SNP [dm3] X_19791408_SNP [dm6]	T	G	6.801e^-5	0.65	INTERGENIC
3R	9770945	3R_9770945_SNP [dm3] 3R_13945223_SNP [dm6]	A	G	6.830e^-5	0.65	SYNONYMOUS_CODING Art6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12613444	3L_12613444_SNP [dm3] 3L_12620344_SNP [dm6]	G	A	6.922e^-5	0.655	SYNONYMOUS_CODING caup	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18708417	2R_18708417_SNP [dm3] 2R_22820912_SNP [dm6]	T	C	6.953e^-5	0.655	UPSTREAM CG42284 INTRON CG30271	TF binding site mE1_TFBS_chinmo
3R	13964561	3R_13964561_SNP [dm3] 3R_18138839_SNP [dm6]	C	T	7.019e^-5	0.658	INTERGENIC
3L	11620476	3L_11620476_SNP [dm3] 3L_11627376_SNP [dm6]	G	A	7.094e^-5	0.659	SYNONYMOUS_CODING PCID2 UPSTREAM CG18815	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	15932295	3L_15932295_SNP [dm3] 3L_15939195_SNP [dm6]	G	A	7.115e^-5	0.659	INTRON Pka-C3
2R	14011837	2R_14011837_SNP [dm3] 2R_18124332_SNP [dm6]	A	T	7.131e^-5	0.659	UPSTREAM stau INTRON stau	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
3L	2002183	3L_2002183_DEL [dm3] 3L_2002183_DEL [dm6]	TA	T	7.360e^-5	0.663	DOWNSTREAM CG42841 INTERGENIC
2L	12977324	2L_12977324_SNP [dm3] 2L_12977324_SNP [dm6]	T	C	7.362e^-5	0.663	SYNONYMOUS_CODING Vha68-2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4546212	2L_4546212_SNP [dm3] 2L_4546212_SNP [dm6]	G	C	7.371e^-5	0.663	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23382884	3R_23382884_DEL [dm3] 3R_27557162_DEL [dm6]	AA	A	7.491e^-5	0.663	INTRON Klp98A	TF binding site BDTNP1_TFBS_z
3L	2002214	3L_2002214_SNP [dm3] 3L_2002214_SNP [dm6]	C	T	7.513e^-5	0.663	DOWNSTREAM CG42841 INTERGENIC
X	12163327	X_12163327_SNP [dm3] X_12269294_SNP [dm6]	A	G	7.577e^-5	0.663	INTRON Ten-a
2L	7146815	2L_7146815_SNP [dm3] 2L_7146815_SNP [dm6]	C	T	7.623e^-5	0.663	INTRON Pvf3
2R	9345445	2R_9345445_SNP [dm3] 2R_13457940_SNP [dm6]	G	A	7.734e^-5	0.663	SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17020098	3L_17020098_SNP [dm3] 3L_17026998_SNP [dm6]	G	C	7.779e^-5	0.663	UTR_3_PRIME Fit2 UPSTREAM CG7730	TF binding site mE1_TFBS_cad
3L	17020146	3L_17020146_SNP [dm3] 3L_17027046_SNP [dm6]	G	A	7.779e^-5	0.663	UTR_3_PRIME Fit2 UPSTREAM CG7730	TF binding site mE1_TFBS_cad
2L	8251596	2L_8251596_SNP [dm3] 2L_8251596_SNP [dm6]	G	A	7.782e^-5	0.663	INTRON CG8086
3L	12240361	3L_12240361_SNP [dm3] 3L_12247261_SNP [dm6]	A	C	7.784e^-5	0.663	INTRON app
2R	19104986	2R_19104986_SNP [dm3] 2R_23217463_SNP [dm6]	C	T	7.793e^-5	0.663	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11894088	X_11894088_SNP [dm3] X_12000055_SNP [dm6]	C	G	7.898e^-5	0.663	INTRON fw
3L	12411561	3L_12411561_SNP [dm3] 3L_12418461_SNP [dm6]	C	T	7.919e^-5	0.663	UPSTREAM ArfGAP1 INTERGENIC	TF binding site mE1_TFBS_cnc
3R	19870635	3R_19870635_SNP [dm3] 3R_24044913_SNP [dm6]	T	C	7.971e^-5	0.663	SYNONYMOUS_CODING Rox8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3928095	3L_3928095_SNP [dm3] 3L_3928095_SNP [dm6]	T	C	7.976e^-5	0.663	INTRON Eip63F-1
3R	27175512	3R_27175512_SNP [dm3] 3R_31349790_SNP [dm6]	C	T	7.981e^-5	0.663	INTRON CG34347	regulatory region REDfly_CRMs
3R	13924655	3R_13924655_SNP [dm3] 3R_18098933_SNP [dm6]	T	C	8.032e^-5	0.663	INTRON sr
3R	24334588	3R_24334588_SNP [dm3] 3R_28508866_SNP [dm6]	T	C	8.100e^-5	0.663	INTRON Dhc98D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	2781524	X_2781524_SNP [dm3] X_2887491_SNP [dm6]	A	T	8.120e^-5	0.663	INTRON kirre
X	12880896	X_12880896_SNP [dm3] X_12986863_SNP [dm6]	G	C	8.126e^-5	0.663	INTERGENIC
2R	1405874	2R_1405874_SNP [dm3] 2R_5518369_SNP [dm6]	T	C	8.156e^-5	0.663	UPSTREAM CG30438 INTRON CG30438	transposable element FlyBase
3L	17020153	3L_17020153_SNP [dm3] 3L_17027053_SNP [dm6]	T	C	8.169e^-5	0.663	UTR_3_PRIME Fit2 UPSTREAM CG7730	TF binding site mE1_TFBS_cad
2R	6106429	2R_6106429_SNP [dm3] 2R_10218924_SNP [dm6]	T	G	8.227e^-5	0.663	INTRON Hr46 & 1 other
3R	23382915	3R_23382915_SNP [dm3] 3R_27557193_SNP [dm6]	C	T	8.229e^-5	0.663	INTRON Klp98A
2R	20204293	2R_20204293_SNP [dm3] 2R_24316770_SNP [dm6]	A	G	8.245e^-5	0.663	INTERGENIC
3R	26839875	3R_26839875_SNP [dm3] 3R_31014153_SNP [dm6]	T	G	8.302e^-5	0.663	INTRON 5-HT7
3R	21776436	3R_21776436_SNP [dm3] 3R_25950714_SNP [dm6]	A	C	8.341e^-5	0.663	INTRON CCAP-R
3L	6022549	3L_6022549_SNP [dm3] 3L_6029449_SNP [dm6]	G	A	8.369e^-5	0.663	INTERGENIC
3L	17280264	3L_17280264_SNP [dm3] 3L_17287164_SNP [dm6]	C	G	8.530e^-5	0.663	INTERGENIC
2L	7898833	2L_7898833_SNP [dm3] 2L_7898833_SNP [dm6]	C	T	8.582e^-5	0.663	INTRON Snoo	TF binding site mE1_TFBS_cad
2L	10186259	2L_10186259_SNP [dm3] 2L_10186259_SNP [dm6]	T	A	8.597e^-5	0.663	INTRON Sur
2R	6923018	2R_6923018_SNP [dm3] 2R_11035513_SNP [dm6]	G	A	8.646e^-5	0.663	INTRON luna
2L	17304804	2L_17304804_SNP [dm3] 2L_17304804_SNP [dm6]	T	A	8.648e^-5	0.663	INTERGENIC
3L	1997808	3L_1997808_SNP [dm3] 3L_1997808_SNP [dm6]	A	C	8.722e^-5	0.663	INTERGENIC
3R	23337985	3R_23337985_SNP [dm3] 3R_27512263_SNP [dm6]	C	T	8.767e^-5	0.663	INTERGENIC
X	16413427	X_16413427_SNP [dm3] X_16519394_SNP [dm6]	G	A	8.769e^-5	0.663	INTRON para
3L	22897713	3L_22897713_SNP [dm3] 3L_22904613_SNP [dm6]	G	T	8.798e^-5	0.663	NON_SYNONYMOUS_CODING BoYb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13913633	2L_13913633_SNP [dm3] 2L_13913633_SNP [dm6]	A	G	8.805e^-5	0.663	DOWNSTREAM Acyp INTERGENIC	TF binding site mE1_TFBS_cad
3R	27117320	3R_27117320_SNP [dm3] 3R_31291598_SNP [dm6]	T	C	8.858e^-5	0.663	INTERGENIC
3L	1999128	3L_1999128_SNP [dm3] 3L_1999128_SNP [dm6]	C	T	8.892e^-5	0.663	INTERGENIC
3L	2002301	3L_2002301_SNP [dm3] 3L_2002301_SNP [dm6]	C	G	8.959e^-5	0.663	DOWNSTREAM CG42841 INTERGENIC
3R	19034794	3R_19034794_SNP [dm3] 3R_23209072_SNP [dm6]	C	T	9.011e^-5	0.663	INTRON cnc
2L	3675493	2L_3675493_SNP [dm3] 2L_3675493_SNP [dm6]	A	G	9.031e^-5	0.663	INTRON CG34340
3R	15673811	3R_15673811_SNP [dm3] 3R_19848089_SNP [dm6]	A	G	9.043e^-5	0.663	INTRON CG4662	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	11352935	3L_11352935_SNP [dm3] 3L_11359835_SNP [dm6]	G	A	9.076e^-5	0.663	INTERGENIC
3R	14837826	3R_14837826_DEL [dm3] 3R_19012104_DEL [dm6]	TT	T	9.157e^-5	0.663	INTRON gukh	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	9385610	2R_9385610_SNP [dm3] 2R_13498105_SNP [dm6]	T	A	9.183e^-5	0.663	INTRON drk
2R	12807397	2R_12807397_SNP [dm3] 2R_16919892_SNP [dm6]	A	C	9.269e^-5	0.663	INTERGENIC
3R	26936882	3R_26936882_SNP [dm3] 3R_31111160_SNP [dm6]	G	C	9.275e^-5	0.663	INTERGENIC
2R	3911095	2R_3911095_SNP [dm3] 2R_8023590_SNP [dm6]	C	T	9.324e^-5	0.663	EXON CR45267
3L	7712676	3L_7712676_SNP [dm3] 3L_7719576_SNP [dm6]	G	A	9.329e^-5	0.663	INTRON CG32373 & 1 other
3L	20876225	3L_20876225_INS [dm3] 3L_20883125_INS [dm6]	T	TAAATTATATTAATTAAATA...	9.353e^-5	0.663	INTRON CG32432
2L	2897179	2L_2897179_SNP [dm3] 2L_2897179_SNP [dm6]	C	T	9.401e^-5	0.663	INTRON lilli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	21124158	2R_21124158_DEL [dm3] 2R_25236635_DEL [dm6]	TT	T	9.489e^-5	0.663	INTRON CG9380	TF binding site mE1_TFBS_Kr
3L	6777779	3L_6777779_SNP [dm3] 3L_6784679_SNP [dm6]	C	G	9.540e^-5	0.663	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	2670119	X_2670119_DEL [dm3] X_2776086_DEL [dm6]	AGCC	A	9.545e^-5	0.663	INTRON kirre
3R	27022220	3R_27022220_SNP [dm3] 3R_31196498_SNP [dm6]	T	A	9.565e^-5	0.663	UPSTREAM mesh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8121006	2L_8121006_SNP [dm3] 2L_8121006_SNP [dm6]	G	A	9.581e^-5	0.663	SYNONYMOUS_CODING mon2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18867611	2R_18867611_SNP [dm3] 2R_22980088_SNP [dm6]	G	T	9.597e^-5	0.663	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11187187	2L_11187187_SNP [dm3] 2L_11187187_SNP [dm6]	T	A	9.625e^-5	0.663	INTRON Ca-beta
2R	14767655	2R_14767655_SNP [dm3] 2R_18880150_SNP [dm6]	T	A	9.659e^-5	0.663	INTRON sano
3L	2002838	3L_2002838_DEL [dm3] 3L_2002838_DEL [dm6]	TT	T	9.674e^-5	0.663	DOWNSTREAM CG42841 INTERGENIC
3R	14368897	3R_14368897_SNP [dm3] 3R_18543175_SNP [dm6]	C	A	9.705e^-5	0.663	INTRON fru
X	3731819	X_3731819_SNP [dm3] X_3837786_SNP [dm6]	A	T	9.711e^-5	0.663	INTRON ec	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	11337220	3L_11337220_SNP [dm3] 3L_11344120_SNP [dm6]	G	A	9.723e^-5	0.663	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA
2L	3666204	2L_3666204_DEL [dm3] 2L_3666204_DEL [dm6]	GT	A	9.726e^-5	0.663	INTRON CG34340
2L	12397314	2L_12397314_SNP [dm3] 2L_12397314_SNP [dm6]	A	T	9.739e^-5	0.663	UTR_3_PRIME bru-2 UPSTREAM Pkd2
3L	9636451	3L_9636451_DEL [dm3] 3L_9643351_DEL [dm6]	ATATCCCAATATA...	A	9.742e^-5	0.663	UPSTREAM CG33696 INTRON fry
3R	16930145	3R_16930145_SNP [dm3] 3R_21104423_SNP [dm6]	C	T	9.810e^-5	0.663	DOWNSTREAM Sec15 INTRON CG5745
2R	18308299	2R_18308299_SNP [dm3] 2R_22420794_SNP [dm6]	C	T	9.830e^-5	0.663	UPSTREAM rad50 & 1 other INTERGENIC
2R	16814957	2R_16814957_SNP [dm3] 2R_20927452_SNP [dm6]	A	G	9.836e^-5	0.663	INTRON Rx
3L	1270024	3L_1270024_SNP [dm3] 3L_1270024_SNP [dm6]	C	T	9.838e^-5	0.663	INTRON CG9134
X	12407421	X_12407421_SNP [dm3] X_12513388_SNP [dm6]	C	A	9.841e^-5	0.663	INTRON CG2556	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25520272	3R_25520272_SNP [dm3] 3R_29694550_SNP [dm6]	T	C	9.906e^-5	0.663	INTRON dmrt99B
3L	9934180	3L_9934180_SNP [dm3] 3L_9941080_SNP [dm6]	C	G	9.979e^-5	0.663	INTRON CG34356	TF binding site BDTNP1_TFBS_hb
3L	1187717	3L_1187717_SNP [dm3] 3L_1187717_SNP [dm6]	G	C	1.001e^-4	0.663	INTERGENIC
2L	16626593	2L_16626593_SNP [dm3] 2L_16626593_SNP [dm6]	C	G	1.011e^-4	0.663	INTRON CG42389	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv
2R	9638486	2R_9638486_SNP [dm3] 2R_13750981_SNP [dm6]	A	G	1.019e^-4	0.663	INTERGENIC
3R	25181708	3R_25181708_INS [dm3] 3R_29355986_INS [dm6]	A	AGT	1.022e^-4	0.663	DOWNSTREAM CR45547 INTERGENIC
3L	5918443	3L_5918443_SNP [dm3] 3L_5925343_SNP [dm6]	T	C	1.025e^-4	0.663	INTRON Vap-33B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5171689	3L_5171689_SNP [dm3] 3L_5178589_SNP [dm6]	A	C	1.026e^-4	0.663	INTRON shep
3R	22786660	3R_22786660_SNP [dm3] 3R_26960938_SNP [dm6]	T	C	1.027e^-4	0.663	DOWNSTREAM Tsp97E INTERGENIC
3L	9575411	3L_9575411_SNP [dm3] 3L_9582311_SNP [dm6]	T	C	1.028e^-4	0.663	INTRON CG42673
2L	13913634	2L_13913634_SNP [dm3] 2L_13913634_SNP [dm6]	G	A	1.031e^-4	0.663	DOWNSTREAM Acyp INTERGENIC	TF binding site mE1_TFBS_cad
3R	13964606	3R_13964606_SNP [dm3] 3R_18138884_SNP [dm6]	A	T	1.031e^-4	0.663	INTERGENIC
X	20576942	X_20576942_SNP [dm3] X_20705915_SNP [dm6]	T	A	1.034e^-4	0.663	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	5171664	3L_5171664_SNP [dm3] 3L_5178564_SNP [dm6]	A	T	1.037e^-4	0.663	INTRON shep
2L	9839061	2L_9839061_SNP [dm3] 2L_9839061_SNP [dm6]	T	G	1.038e^-4	0.663	INTRON nAChRalpha6	TF binding site mE1_TFBS_chinmo
3L	7477744	3L_7477744_SNP [dm3] 3L_7484644_SNP [dm6]	G	A	1.046e^-4	0.663	INTERGENIC
2L	17081105	2L_17081105_SNP [dm3] 2L_17081105_SNP [dm6]	T	G	1.050e^-4	0.663	INTERGENIC
3R	27033325	3R_27033325_SNP [dm3] 3R_31207603_SNP [dm6]	A	T	1.060e^-4	0.663	INTRON chp
3L	2004867	3L_2004867_SNP [dm3] 3L_2004867_SNP [dm6]	G	A	1.060e^-4	0.663	DOWNSTREAM CG42841 INTRON CG42841
3R	15829628	3R_15829628_SNP [dm3] 3R_20003906_SNP [dm6]	T	C	1.063e^-4	0.663	INTRON Hs6st	TF binding site mE1_TFBS_zfh1
2L	16173290	2L_16173290_SNP [dm3] 2L_16173290_SNP [dm6]	T	A	1.066e^-4	0.663	INTRON Ca-alpha1D	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	23382912	3R_23382912_SNP [dm3] 3R_27557190_SNP [dm6]	C	A	1.071e^-4	0.663	INTRON Klp98A
2L	16538567	2L_16538567_SNP [dm3] 2L_16538567_SNP [dm6]	C	T	1.080e^-4	0.663	INTERGENIC
X	16886317	X_16886317_SNP [dm3] X_16992284_SNP [dm6]	A	T	1.082e^-4	0.663	INTRON CG45002
3L	12101977	3L_12101977_SNP [dm3] 3L_12108877_SNP [dm6]	G	T	1.082e^-4	0.663	INTERGENIC
2L	11821224	2L_11821224_SNP [dm3] 2L_11821224_SNP [dm6]	C	T	1.084e^-4	0.663	NON_SYNONYMOUS_CODING Pde1c INTRON Pde1c
3L	1996637	3L_1996637_SNP [dm3] 3L_1996637_SNP [dm6]	G	A	1.089e^-4	0.663	INTERGENIC
3L	17235853	3L_17235853_SNP [dm3] 3L_17242753_SNP [dm6]	T	G	1.093e^-4	0.663	UPSTREAM CG6512 & 1 other INTERGENIC	transposable element FlyBase
3L	7852135	3L_7852135_SNP [dm3] 3L_7859035_SNP [dm6]	G	C	1.106e^-4	0.663	INTRON Pdp1
3R	23382898	3R_23382898_DEL [dm3] 3R_27557176_DEL [dm6]	TGT	T	1.110e^-4	0.663	INTRON Klp98A	TF binding site BDTNP1_TFBS_z
3R	16708920	3R_16708920_DEL [dm3] 3R_20883198_DEL [dm6]	ATA	GG	1.111e^-4	0.663	INTERGENIC
X	13709002	X_13709002_SNP [dm3] X_13814969_SNP [dm6]	T	C	1.119e^-4	0.663	INTRON Clic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu
3R	19200966	3R_19200966_INS [dm3] 3R_23375244_INS [dm6]	T	TAAT	1.120e^-4	0.663	DOWNSTREAM CG42828 & 1 other INTERGENIC
3R	19200969	3R_19200969_SNP [dm3] 3R_23375247_SNP [dm6]	T	A	1.123e^-4	0.663	DOWNSTREAM CG4393 INTERGENIC
3L	7852205	3L_7852205_SNP [dm3] 3L_7859105_SNP [dm6]	T	A	1.125e^-4	0.663	INTRON Pdp1
2R	18552038	2R_18552038_INS [dm3] 2R_22664533_INS [dm6]	A	ACGT	1.127e^-4	0.663	DOWNSTREAM CG4250 INTERGENIC
3L	13769601	3L_13769601_SNP [dm3] 3L_13776501_SNP [dm6]	T	G	1.128e^-4	0.663	INTRON bru-3
3R	26578366	3R_26578366_SNP [dm3] 3R_30752644_SNP [dm6]	T	A	1.132e^-4	0.663	INTERGENIC
3L	1996351	3L_1996351_SNP [dm3] 3L_1996351_SNP [dm6]	T	A	1.133e^-4	0.663	INTERGENIC
2R	18552034	2R_18552034_INS [dm3] 2R_22664529_INS [dm6]	G	AGACTTGGTTTGTATCACAA...	1.138e^-4	0.663	DOWNSTREAM CG4250 INTERGENIC
3R	5831143	3R_5831143_SNP [dm3] 3R_10005421_SNP [dm6]	G	A	1.139e^-4	0.663	SYNONYMOUS_CODING Mical UTR_3_PRIME Mical	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2R	17203805	2R_17203805_SNP [dm3] 2R_21316300_SNP [dm6]	T	G	1.139e^-4	0.663	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12263980	2R_12263980_SNP [dm3] 2R_16376475_SNP [dm6]	G	A	1.142e^-4	0.663	INTERGENIC
2L	17078205	2L_17078205_SNP [dm3] 2L_17078205_SNP [dm6]	C	T	1.144e^-4	0.663	INTERGENIC
3R	26879883	3R_26879883_SNP [dm3] 3R_31054161_SNP [dm6]	G	A	1.144e^-4	0.663	UTR_3_PRIME dco UPSTREAM l_3_03670	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	18011742	X_18011742_SNP [dm3] X_18117709_SNP [dm6]	G	T	1.145e^-4	0.663	UPSTREAM wupA INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	12151504	3L_12151504_SNP [dm3] 3L_12158404_SNP [dm6]	G	T	1.156e^-4	0.663	INTRON CG9760	TF binding site mE1_TFBS_cad
3L	10539035	3L_10539035_DEL [dm3] 3L_10545935_DEL [dm6]	TAACTTTTA	T	1.156e^-4	0.663	INTRON A2bp1
3L	18753899	3L_18753899_SNP [dm3] 3L_18760799_SNP [dm6]	C	A	1.159e^-4	0.663	INTRON ftz-f1	TF binding site mE1_TFBS_Trl
3R	22786565	3R_22786565_SNP [dm3] 3R_26960843_SNP [dm6]	T	C	1.160e^-4	0.663	DOWNSTREAM Tsp97E INTERGENIC
X	8171748	X_8171748_SNP [dm3] X_8277715_SNP [dm6]	C	T	1.169e^-4	0.666	UTR_3_PRIME nAChRalpha3
3R	25395002	3R_25395002_SNP [dm3] 3R_29569280_SNP [dm6]	C	T	1.172e^-4	0.666	INTERGENIC
3R	25181711	3R_25181711_MNP [dm3] 3R_29355989_MNP [dm6]	CTA	TAG	1.185e^-4	0.668	DOWNSTREAM CR45547 INTERGENIC
2L	13916342	2L_13916342_SNP [dm3] 2L_13916342_SNP [dm6]	G	A	1.190e^-4	0.668	INTRON Ance-3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10514783	3R_10514783_SNP [dm3] 3R_14689061_SNP [dm6]	C	A	1.190e^-4	0.668	INTRON Meltrin
2L	13911853	2L_13911853_SNP [dm3] 2L_13911853_SNP [dm6]	A	G	1.194e^-4	0.668	UPSTREAM Acyp DOWNSTREAM Ance-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	20330061	2L_20330061_SNP [dm3] 2L_20330061_SNP [dm6]	T	G	1.199e^-4	0.668	INTRON spir
2L	20914880	2L_20914880_SNP [dm3] 2L_20914880_SNP [dm6]	G	T	1.200e^-4	0.668	INTRON sky & 1 other	TF binding site mE1_TFBS_D mE1_TFBS_HSA transposable element FlyBase
3L	7469526	3L_7469526_SNP [dm3] 3L_7476426_SNP [dm6]	T	C	1.205e^-4	0.668	DOWNSTREAM CG43292 INTERGENIC
2R	7288147	2R_7288147_SNP [dm3] 2R_11400642_SNP [dm6]	C	T	1.208e^-4	0.668	UPSTREAM tRNA:CR30506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2R	14191675	2R_14191675_SNP [dm3] 2R_18304170_SNP [dm6]	A	T	1.209e^-4	0.668	UPSTREAM CG14505 INTRON sbb	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	17839165	2R_17839165_SNP [dm3] 2R_21951660_SNP [dm6]	G	T	1.215e^-4	0.668	NON_SYNONYMOUS_CODING CG13488 SPLICE_SITE_REGION CG13488 UPSTREAM CG13488
3R	10904075	3R_10904075_SNP [dm3] 3R_15078353_SNP [dm6]	G	A	1.218e^-4	0.668	DOWNSTREAM CG6974 & 1 other INTERGENIC
2R	836731	2R_836731_SNP [dm3] 2R_4949226_SNP [dm6]	T	C	1.219e^-4	0.668	INTRON Ir41a	transposable element FlyBase
2L	17152437	2L_17152437_SNP [dm3] 2L_17152437_SNP [dm6]	G	T	1.231e^-4	0.669	INTRON beat-IIIa & 1 other
3L	21122346	3L_21122346_SNP [dm3] 3L_21129246_SNP [dm6]	G	A	1.237e^-4	0.669	INTRON ko
3L	6291711	3L_6291711_SNP [dm3] 3L_6298611_SNP [dm6]	T	C	1.238e^-4	0.669	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7687819	3L_7687819_DEL [dm3] 3L_7694719_DEL [dm6]	AA	A	1.238e^-4	0.669	INTRON CG32373 & 2 others
X	6167692	X_6167692_SNP [dm3] X_6273659_SNP [dm6]	C	T	1.239e^-4	0.669	SYNONYMOUS_CODING Spt6	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8055749	2L_8055749_SNP [dm3] 2L_8055749_SNP [dm6]	A	G	1.247e^-4	0.669	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14439101	3R_14439101_SNP [dm3] 3R_18613379_SNP [dm6]	T	A	1.248e^-4	0.669	INTRON qin & 1 other
X	2691554	X_2691554_SNP [dm3] X_2797521_SNP [dm6]	G	T	1.251e^-4	0.669	INTRON kirre
3L	6291176	3L_6291176_SNP [dm3] 3L_6298076_SNP [dm6]	G	A	1.265e^-4	0.669	INTERGENIC	TF binding site mE1_TFBS_cad
3L	2118136	3L_2118136_INS [dm3] 3L_2118136_INS [dm6]	C	CCCCAAGAGCAG...	1.265e^-4	0.669	INTRON zormin
3R	26364288	3R_26364288_SNP [dm3] 3R_30538566_SNP [dm6]	T	C	1.274e^-4	0.669	UPSTREAM tmod INTRON tmod
2L	5512604	2L_5512604_SNP [dm3] 2L_5512604_SNP [dm6]	C	A	1.278e^-4	0.669	INTERGENIC
X	13905863	X_13905863_SNP [dm3] X_14011830_SNP [dm6]	G	A	1.283e^-4	0.669	INTERGENIC
3L	2927293	3L_2927293_SNP [dm3] 3L_2927293_SNP [dm6]	A	G	1.287e^-4	0.669	INTRON Shab
2L	9279998	2L_9279998_SNP [dm3] 2L_9279998_SNP [dm6]	G	T	1.293e^-4	0.669	INTRON Ggamma30A
3R	2714046	3R_2714046_SNP [dm3] 3R_6888324_SNP [dm6]	T	A	1.294e^-4	0.669	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	7898211	2L_7898211_SNP [dm3] 2L_7898211_SNP [dm6]	C	A	1.295e^-4	0.669	INTRON Snoo
2L	16870636	2L_16870636_SNP [dm3] 2L_16870636_SNP [dm6]	T	A	1.296e^-4	0.669	EXON CR31781
3L	12455674	3L_12455674_SNP [dm3] 3L_12462574_SNP [dm6]	C	T	1.298e^-4	0.669	UTR_3_PRIME eyg DOWNSTREAM eyg
2L	16931417	2L_16931417_SNP [dm3] 2L_16931417_SNP [dm6]	A	G	1.308e^-4	0.669	INTERGENIC
2R	4220700	2R_4220700_SNP [dm3] 2R_8333195_SNP [dm6]	G	A	1.309e^-4	0.669	INTRON pdm3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3R	17003232	3R_17003232_SNP [dm3] 3R_21177510_SNP [dm6]	G	C	1.316e^-4	0.669	INTRON SNF4Agamma
2R	10475447	2R_10475447_SNP [dm3] 2R_14587942_SNP [dm6]	A	G	1.318e^-4	0.669	DOWNSTREAM ttv INTERGENIC
3L	2000731	3L_2000731_SNP [dm3] 3L_2000731_SNP [dm6]	A	T	1.323e^-4	0.669	INTERGENIC
3L	15759395	3L_15759395_SNP [dm3] 3L_15766295_SNP [dm6]	C	T	1.325e^-4	0.669	INTERGENIC
3R	17653527	3R_17653527_SNP [dm3] 3R_21827805_SNP [dm6]	T	C	1.329e^-4	0.669	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	11735231	2R_11735231_SNP [dm3] 2R_15847726_SNP [dm6]	T	C	1.331e^-4	0.669	UPSTREAM CG8249 & 1 other INTRON tun	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10535797	3L_10535797_SNP [dm3] 3L_10542697_SNP [dm6]	A	G	1.332e^-4	0.669	INTRON A2bp1
X	15116292	X_15116292_SNP [dm3] X_15222259_SNP [dm6]	A	T	1.335e^-4	0.669	DOWNSTREAM CG43076 INTERGENIC
3L	2024374	3L_2024374_SNP [dm3] 3L_2024374_SNP [dm6]	T	C	1.339e^-4	0.669	UPSTREAM CG42356 INTERGENIC
3L	5262905	3L_5262905_SNP [dm3] 3L_5269805_SNP [dm6]	T	A	1.341e^-4	0.669	INTRON shep
2R	19712761	2R_19712761_SNP [dm3] 2R_23825238_SNP [dm6]	G	C	1.347e^-4	0.669	UPSTREAM CG4763 INTRON CG5549
2L	7503782	2L_7503782_SNP [dm3] 2L_7503782_SNP [dm6]	G	A	1.347e^-4	0.669	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
3L	1996361	3L_1996361_SNP [dm3] 3L_1996361_SNP [dm6]	G	C	1.347e^-4	0.669	INTERGENIC
X	10804645	X_10804645_SNP [dm3] X_10910612_SNP [dm6]	C	G	1.348e^-4	0.669	INTRON CG43901	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26068476	3R_26068476_SNP [dm3] 3R_30242754_SNP [dm6]	C	T	1.350e^-4	0.669	SYNONYMOUS_CODING CG9737
2L	13911851	2L_13911851_SNP [dm3] 2L_13911851_SNP [dm6]	A	T	1.352e^-4	0.669	UPSTREAM Acyp DOWNSTREAM Ance-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	9345613	2R_9345613_SNP [dm3] 2R_13458108_SNP [dm6]	A	G	1.366e^-4	0.67	SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6476394	X_6476394_SNP [dm3] X_6582361_SNP [dm6]	G	C	1.375e^-4	0.67	SYNONYMOUS_CODING CG34417 INTRON CG34417
X	12387073	X_12387073_SNP [dm3] X_12493040_SNP [dm6]	A	T	1.376e^-4	0.67	DOWNSTREAM Lsp1alpha INTERGENIC
3L	10929087	3L_10929087_SNP [dm3] 3L_10935987_SNP [dm6]	C	G	1.378e^-4	0.67	INTERGENIC
2L	9280008	2L_9280008_SNP [dm3] 2L_9280008_SNP [dm6]	C	T	1.378e^-4	0.67	INTRON Ggamma30A
3L	3563000	3L_3563000_SNP [dm3] 3L_3563000_SNP [dm6]	C	G	1.379e^-4	0.67	INTRON Eip63E
3L	10317645	3L_10317645_SNP [dm3] 3L_10324545_SNP [dm6]	A	T	1.383e^-4	0.67	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	6407920	2L_6407920_SNP [dm3] 2L_6407920_SNP [dm6]	T	A	1.386e^-4	0.67	INTRON CG42368
2L	3797314	2L_3797314_SNP [dm3] 2L_3797314_SNP [dm6]	T	C	1.401e^-4	0.67	SYNONYMOUS_CODING CG3921
X	3731821	X_3731821_SNP [dm3] X_3837788_SNP [dm6]	T	C	1.404e^-4	0.67	INTRON ec	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	21889502	3R_21889502_SNP [dm3] 3R_26063780_SNP [dm6]	C	A	1.405e^-4	0.67	UPSTREAM CG14551 INTERGENIC
3L	4078625	3L_4078625_SNP [dm3] 3L_4078625_SNP [dm6]	A	C	1.409e^-4	0.67	INTRON Gad1
2R	4917049	2R_4917049_SNP [dm3] 2R_9029544_SNP [dm6]	T	A	1.409e^-4	0.67	INTRON CG8170
3L	14105845	3L_14105845_SNP [dm3] 3L_14112745_SNP [dm6]	T	A	1.416e^-4	0.67	UTR_3_PRIME Sox21b
3R	18659695	3R_18659695_DEL [dm3] 3R_22833973_DEL [dm6]	GCTTG	G	1.417e^-4	0.67	INTERGENIC
3R	17967963	3R_17967963_SNP [dm3] 3R_22142241_SNP [dm6]	A	T	1.425e^-4	0.67	INTRON SKIP	TF binding site BDTNP1_TFBS_twi
X	18235923	X_18235923_SNP [dm3] X_18341890_SNP [dm6]	G	A	1.427e^-4	0.67	INTRON CG6123
X	20715600	X_20715600_SNP [dm3] X_20844573_SNP [dm6]	A	G	1.427e^-4	0.67	INTRON shakB
2R	16708665	2R_16708665_INS [dm3] 2R_20821160_INS [dm6]	T	TT	1.431e^-4	0.67	DOWNSTREAM insc INTERGENIC
3R	24334531	3R_24334531_SNP [dm3] 3R_28508809_SNP [dm6]	G	A	1.439e^-4	0.67	INTRON Dhc98D	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15691815	3L_15691815_DEL [dm3] 3L_15698715_DEL [dm6]	TT	T	1.453e^-4	0.67	INTRON comm2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_hkb mE1_TFBS_Trl
3R	26348166	3R_26348166_SNP [dm3] 3R_30522444_SNP [dm6]	C	G	1.455e^-4	0.67	INTRON jdp
3L	6907172	3L_6907172_SNP [dm3] 3L_6914072_SNP [dm6]	G	T	1.466e^-4	0.67	UPSTREAM Prat2 INTRON Prat2
X	9636282	X_9636282_DEL [dm3] X_9742249_DEL [dm6]	GCAAGTTATC	G	1.471e^-4	0.67	INTRON Sp1
X	6455185	X_6455185_SNP [dm3] X_6561152_SNP [dm6]	G	C	1.473e^-4	0.67	NON_SYNONYMOUS_CODING CG34417
3R	13964609	3R_13964609_MNP [dm3] 3R_18138887_MNP [dm6]	ATTC	CCAT	1.477e^-4	0.67	INTERGENIC
3R	13964615	3R_13964615_DEL [dm3] 3R_18138893_DEL [dm6]	TAGCAG	T	1.477e^-4	0.67	INTERGENIC
2L	10930989	2L_10930989_SNP [dm3] 2L_10930989_SNP [dm6]	A	C	1.480e^-4	0.67	INTRON dpr2
3L	3140589	3L_3140589_SNP [dm3] 3L_3140589_SNP [dm6]	A	T	1.490e^-4	0.67	UPSTREAM CG11537 INTRON CG11537
3R	22065129	3R_22065129_SNP [dm3] 3R_26239407_SNP [dm6]	G	A	1.491e^-4	0.67	INTRON CR42745
X	12387069	X_12387069_SNP [dm3] X_12493036_SNP [dm6]	T	G	1.496e^-4	0.67	DOWNSTREAM Lsp1alpha INTERGENIC
X	12274820	X_12274820_SNP [dm3] X_12380787_SNP [dm6]	A	G	1.500e^-4	0.67	INTERGENIC
2L	12414212	2L_12414212_SNP [dm3] 2L_12414212_SNP [dm6]	A	G	1.502e^-4	0.67	INTRON vir-1
3R	22767612	3R_22767612_SNP [dm3] 3R_26941890_SNP [dm6]	T	A	1.503e^-4	0.67	SPLICE_SITE_REGION sda INTRON sda	TF binding site mE1_TFBS_cad
3L	13769594	3L_13769594_SNP [dm3] 3L_13776494_SNP [dm6]	A	T	1.508e^-4	0.67	INTRON bru-3
3R	22790291	3R_22790291_SNP [dm3] 3R_26964569_SNP [dm6]	G	A	1.516e^-4	0.67	DOWNSTREAM Gr97a INTRON Tsp97E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	13964575	3R_13964575_SNP [dm3] 3R_18138853_SNP [dm6]	A	T	1.519e^-4	0.67	INTERGENIC
3L	8040275	3L_8040275_SNP [dm3] 3L_8047175_SNP [dm6]	T	C	1.519e^-4	0.67	INTRON nmo	TF binding site mE1_TFBS_cad
X	9629256	X_9629256_DEL [dm3] X_9735223_DEL [dm6]	CGTGGTGTC	C	1.520e^-4	0.67	INTRON Sp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	14437392	3R_14437392_SNP [dm3] 3R_18611670_SNP [dm6]	A	C	1.521e^-4	0.67	INTRON qin & 1 other
2L	16921227	2L_16921227_SNP [dm3] 2L_16921227_SNP [dm6]	A	C	1.527e^-4	0.67	INTERGENIC
3R	23504329	3R_23504329_SNP [dm3] 3R_27678607_SNP [dm6]	C	T	1.528e^-4	0.67	SYNONYMOUS_CODING CG5590 UPSTREAM CG12883	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	16708925	3R_16708925_SNP [dm3] 3R_20883203_SNP [dm6]	A	G	1.528e^-4	0.67	INTERGENIC
X	20386246	X_20386246_SNP [dm3] X_20515219_SNP [dm6]	A	T	1.536e^-4	0.67	UTR_3_PRIME CG1812 DOWNSTREAM Tak1	TF binding site mE1_TFBS_ftz_f1
X	19797299	X_19797299_SNP [dm3] X_19903266_SNP [dm6]	G	C	1.537e^-4	0.67	NON_SYNONYMOUS_CODING Hers	TF binding site mE1_TFBS_chinmo
3L	2683247	3L_2683247_SNP [dm3] 3L_2683247_SNP [dm6]	G	C	1.541e^-4	0.67	INTRON Fife
2L	18751046	2L_18751046_SNP [dm3] 2L_18751046_SNP [dm6]	T	A	1.543e^-4	0.67	INTERGENIC
X	8937166	X_8937166_SNP [dm3] X_9043133_SNP [dm6]	A	G	1.550e^-4	0.67	INTRON CR43836 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	18640202	3R_18640202_SNP [dm3] 3R_22814480_SNP [dm6]	C	A	1.552e^-4	0.67	DOWNSTREAM CG13840 INTERGENIC
2R	10475872	2R_10475872_SNP [dm3] 2R_14588367_SNP [dm6]	A	G	1.553e^-4	0.67	DOWNSTREAM ttv INTERGENIC
2R	8518758	2R_8518758_SNP [dm3] 2R_12631253_SNP [dm6]	C	T	1.553e^-4	0.67	INTRON muskelin	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25520266	3R_25520266_SNP [dm3] 3R_29694544_SNP [dm6]	G	T	1.562e^-4	0.67	INTRON dmrt99B
3L	12101983	3L_12101983_SNP [dm3] 3L_12108883_SNP [dm6]	G	T	1.573e^-4	0.67	INTERGENIC
2L	1590705	2L_1590705_SNP [dm3] 2L_1590705_SNP [dm6]	G	A	1.574e^-4	0.67	INTRON haf
3R	9449291	3R_9449291_SNP [dm3] 3R_13623569_SNP [dm6]	G	C	1.579e^-4	0.67	INTERGENIC
2R	8516182	2R_8516182_SNP [dm3] 2R_12628677_SNP [dm6]	A	G	1.582e^-4	0.67	DOWNSTREAM muskelin & 1 other INTERGENIC
X	15559759	X_15559759_SNP [dm3] X_15665726_SNP [dm6]	A	G	1.583e^-4	0.67	UPSTREAM CR43299 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	22786559	3R_22786559_SNP [dm3] 3R_26960837_SNP [dm6]	T	C	1.589e^-4	0.67	DOWNSTREAM Tsp97E INTERGENIC
3R	25520296	3R_25520296_SNP [dm3] 3R_29694574_SNP [dm6]	T	C	1.590e^-4	0.67	INTRON dmrt99B
X	17048276	X_17048276_DEL [dm3] X_17154243_DEL [dm6]	AA	A	1.593e^-4	0.67	UTR_3_PRIME xmas-2 INTRON xmas-1
3R	22786588	3R_22786588_SNP [dm3] 3R_26960866_SNP [dm6]	A	G	1.595e^-4	0.67	DOWNSTREAM Tsp97E INTERGENIC
X	20551923	X_20551923_SNP [dm3] X_20680896_SNP [dm6]	G	T	1.600e^-4	0.67	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	1613034	2L_1613034_SNP [dm3] 2L_1613034_SNP [dm6]	C	G	1.603e^-4	0.67	DOWNSTREAM CG14352 INTRON RFeSP	TF binding site mE1_TFBS_chinmo
3L	2266780	3L_2266780_SNP [dm3] 3L_2266780_SNP [dm6]	A	G	1.604e^-4	0.67	SYNONYMOUS_CODING CG13806 UPSTREAM ecd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3R	22270866	3R_22270866_SNP [dm3] 3R_26445144_SNP [dm6]	C	A	1.606e^-4	0.67	INTRON tx
3L	2005785	3L_2005785_SNP [dm3] 3L_2005785_SNP [dm6]	G	A	1.610e^-4	0.67	UPSTREAM CG42841 INTERGENIC
3R	26188148	3R_26188148_SNP [dm3] 3R_30362426_SNP [dm6]	T	A	1.616e^-4	0.67	UTR_3_PRIME hdc DOWNSTREAM hdc
3L	18947080	3L_18947080_SNP [dm3] 3L_18953980_SNP [dm6]	A	G	1.619e^-4	0.67	INTRON CG6836
3R	18588006	3R_18588006_SNP [dm3] 3R_22762284_SNP [dm6]	A	C	1.620e^-4	0.67	NON_SYNONYMOUS_CODING CG4723 INTRON Usp12-46 & 1 other
2L	9281643	2L_9281643_SNP [dm3] 2L_9281643_SNP [dm6]	G	T	1.622e^-4	0.67	INTRON Ggamma30A
X	14757350	X_14757350_SNP [dm3] X_14863317_SNP [dm6]	T	A	1.630e^-4	0.67	UTR_3_PRIME CG9518 INTRON Flo2
2L	10546048	2L_10546048_SNP [dm3] 2L_10546048_SNP [dm6]	G	A	1.630e^-4	0.67	SYNONYMOUS_CODING Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2948431	3L_2948431_SNP [dm3] 3L_2948431_SNP [dm6]	T	A	1.632e^-4	0.67	INTRON Shab
X	18010025	X_18010025_SNP [dm3] X_18115992_SNP [dm6]	G	A	1.634e^-4	0.67	INTRON wupA	regulatory region REDfly_CRMs
3L	1999368	3L_1999368_SNP [dm3] 3L_1999368_SNP [dm6]	C	A	1.636e^-4	0.67	INTERGENIC
3R	26878386	3R_26878386_SNP [dm3] 3R_31052664_SNP [dm6]	T	A	1.637e^-4	0.67	UTR_3_PRIME l_3_03670 DOWNSTREAM Aph-4	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	6106417	2R_6106417_SNP [dm3] 2R_10218912_SNP [dm6]	G	A	1.639e^-4	0.67	INTRON Hr46 & 1 other
2R	6106419	2R_6106419_DEL [dm3] 2R_10218914_DEL [dm6]	TA	T	1.639e^-4	0.67	INTRON Hr46 & 1 other
3R	18395045	3R_18395045_SNP [dm3] 3R_22569323_SNP [dm6]	A	T	1.641e^-4	0.67	UPSTREAM CG33110 INTERGENIC	TF binding site mE1_TFBS_inv
X	13905861	X_13905861_SNP [dm3] X_14011828_SNP [dm6]	A	T	1.646e^-4	0.67	INTERGENIC
3R	15328855	3R_15328855_INS [dm3] 3R_19503133_INS [dm6]	A	AA	1.646e^-4	0.67	UPSTREAM Dys INTRON Dys	TF binding site mE1_TFBS_Trl
3L	9355083	3L_9355083_DEL [dm3] 3L_9361983_DEL [dm6]	TT	T	1.655e^-4	0.67	UTR_3_PRIME CG34455 UPSTREAM CG34456 DOWNSTREAM Klp67A
3L	10539087	3L_10539087_SNP [dm3] 3L_10545987_SNP [dm6]	C	A	1.658e^-4	0.67	INTRON A2bp1
2L	8140159	2L_8140159_SNP [dm3] 2L_8140159_SNP [dm6]	T	A	1.669e^-4	0.67	SYNONYMOUS_CODING CG8552 UTR_5_PRIME CG8552	TF binding site mE1_TFBS_cad
2L	6323474	2L_6323474_SNP [dm3] 2L_6323474_SNP [dm6]	C	A	1.670e^-4	0.67	UPSTREAM PDZ-GEF DOWNSTREAM Ddr INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	10468108	X_10468108_SNP [dm3] X_10574075_SNP [dm6]	C	T	1.670e^-4	0.67	INTRON spri
3L	13924066	3L_13924066_SNP [dm3] 3L_13930966_SNP [dm6]	G	A	1.673e^-4	0.67	NON_SYNONYMOUS_CODING Gl	TF binding site mE1_TFBS_cad
X	16225284	X_16225284_SNP [dm3] X_16331251_SNP [dm6]	A	T	1.674e^-4	0.67	UPSTREAM CG9919 DOWNSTREAM CG9921 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	6948719	3L_6948719_SNP [dm3] 3L_6955619_SNP [dm6]	G	T	1.675e^-4	0.67	UPSTREAM CG9948 & 1 other INTRON CG10077	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	1169309	2R_1169309_SNP [dm3] 2R_5281804_SNP [dm6]	C	T	1.676e^-4	0.67	INTRON d4	transposable element FlyBase
2L	3584266	2L_3584266_SNP [dm3] 2L_3584266_SNP [dm6]	C	G	1.680e^-4	0.67	INTERGENIC
X	5145145	X_5145145_SNP [dm3] X_5251112_SNP [dm6]	A	T	1.688e^-4	0.672	UTR_3_PRIME CG15465 & 1 other DOWNSTREAM rg
X	17204036	X_17204036_DEL [dm3] X_17310003_DEL [dm6]	AT	A	1.698e^-4	0.674	INTERGENIC
3L	2001713	3L_2001713_SNP [dm3] 3L_2001713_SNP [dm6]	A	G	1.710e^-4	0.674	INTERGENIC
3R	26935611	3R_26935611_SNP [dm3] 3R_31109889_SNP [dm6]	C	G	1.719e^-4	0.674	UPSTREAM CG11318 INTERGENIC
2R	15931170	2R_15931170_SNP [dm3] 2R_20043665_SNP [dm6]	A	G	1.725e^-4	0.674	INTERGENIC	TF binding site mE1_TFBS_cad
2L	15104611	2L_15104611_INS [dm3] 2L_15104611_INS [dm6]	C	CCAAC	1.726e^-4	0.674	INTERGENIC
X	12750178	X_12750178_SNP [dm3] X_12856145_SNP [dm6]	A	C	1.736e^-4	0.674	SYNONYMOUS_CODING CG4661 INTRON Pde9
2L	17052554	2L_17052554_SNP [dm3] 2L_17052554_SNP [dm6]	G	A	1.738e^-4	0.674	INTERGENIC
3R	13964564	3R_13964564_SNP [dm3] 3R_18138842_SNP [dm6]	A	G	1.738e^-4	0.674	INTERGENIC
2L	14236915	2L_14236915_SNP [dm3] 2L_14236915_SNP [dm6]	C	G	1.740e^-4	0.674	DOWNSTREAM CR44728 INTERGENIC
3L	7098523	3L_7098523_SNP [dm3] 3L_7105423_SNP [dm6]	G	T	1.749e^-4	0.674	INTRON form3
3R	20989003	3R_20989003_SNP [dm3] 3R_25163281_SNP [dm6]	T	C	1.751e^-4	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7269171	2L_7269171_SNP [dm3] 2L_7269171_SNP [dm6]	C	G	1.756e^-4	0.674	INTRON Wnt4
3R	21889501	3R_21889501_SNP [dm3] 3R_26063779_SNP [dm6]	T	A	1.761e^-4	0.674	UPSTREAM CG14551 INTERGENIC
2L	19102417	2L_19102417_SNP [dm3] 2L_19102417_SNP [dm6]	G	T	1.767e^-4	0.674	SYNONYMOUS_CODING CG17344 UTR_3_PRIME CG43731 INTRON Lim3
3R	20918634	3R_20918634_INS [dm3] 3R_25092912_INS [dm6]	G	GG	1.769e^-4	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16188691	2L_16188691_SNP [dm3] 2L_16188691_SNP [dm6]	C	G	1.778e^-4	0.674	INTRON Ca-alpha1D
3R	25520265	3R_25520265_SNP [dm3] 3R_29694543_SNP [dm6]	G	A	1.787e^-4	0.674	INTRON dmrt99B
3R	25182085	3R_25182085_SNP [dm3] 3R_29356363_SNP [dm6]	G	A	1.789e^-4	0.674	EXON CR45547
3L	4992210	3L_4992210_SNP [dm3] 3L_4992210_SNP [dm6]	T	C	1.798e^-4	0.674	INTRON Con	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3R	16504928	3R_16504928_SNP [dm3] 3R_20679206_SNP [dm6]	A	C	1.803e^-4	0.674	DOWNSTREAM CR43452 INTERGENIC
3R	18395046	3R_18395046_SNP [dm3] 3R_22569324_SNP [dm6]	T	A	1.807e^-4	0.674	UPSTREAM CG33110 INTERGENIC	TF binding site mE1_TFBS_inv
3R	9382670	3R_9382670_SNP [dm3] 3R_13556948_SNP [dm6]	G	T	1.811e^-4	0.674	INTERGENIC
3R	27162074	3R_27162074_SNP [dm3] 3R_31336352_SNP [dm6]	C	T	1.815e^-4	0.674	INTRON CG34347
3R	17013921	3R_17013921_SNP [dm3] 3R_21188199_SNP [dm6]	C	G	1.821e^-4	0.674	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
X	9636301	X_9636301_SNP [dm3] X_9742268_SNP [dm6]	G	A	1.827e^-4	0.674	INTRON Sp1
3R	18393492	3R_18393492_SNP [dm3] 3R_22567770_SNP [dm6]	C	A	1.828e^-4	0.674	INTERGENIC
3L	13094020	3L_13094020_SNP [dm3] 3L_13100920_SNP [dm6]	A	C	1.833e^-4	0.674	DOWNSTREAM CR44554 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3616304	2R_3616304_SNP [dm3] 2R_7728799_SNP [dm6]	G	T	1.837e^-4	0.674	INTRON CG18812
3L	7111490	3L_7111490_SNP [dm3] 3L_7118390_SNP [dm6]	A	G	1.844e^-4	0.674	SYNONYMOUS_CODING form3	TF binding site mE1_TFBS_chinmo
3L	17122283	3L_17122283_SNP [dm3] 3L_17129183_SNP [dm6]	C	A	1.853e^-4	0.674	INTRON Rbp6
2R	12802816	2R_12802816_SNP [dm3] 2R_16915311_SNP [dm6]	G	T	1.854e^-4	0.674	INTERGENIC
3L	2000000	3L_2000000_SNP [dm3] 3L_2000000_SNP [dm6]	G	C	1.858e^-4	0.674	INTERGENIC
2R	13495014	2R_13495014_SNP [dm3] 2R_17607509_SNP [dm6]	G	A	1.863e^-4	0.674	NON_SYNONYMOUS_CODING CG10936	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15462441	3R_15462441_SNP [dm3] 3R_19636719_SNP [dm6]	C	T	1.866e^-4	0.674	SYNONYMOUS_CODING subdued DOWNSTREAM CG34138
X	16225403	X_16225403_SNP [dm3] X_16331370_SNP [dm6]	T	A	1.875e^-4	0.674	UTR_3_PRIME CG9921 UPSTREAM CG9919	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	16737255	3L_16737255_SNP [dm3] 3L_16744155_SNP [dm6]	C	T	1.884e^-4	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	6747099	X_6747099_DEL [dm3] X_6853066_DEL [dm6]	TTCTAATTTTGCAACG...	T	1.886e^-4	0.674	UPSTREAM CG14434 INTRON CG14434	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18947121	3L_18947121_SNP [dm3] 3L_18954021_SNP [dm6]	A	G	1.888e^-4	0.674	INTRON CG6836
3L	7006734	3L_7006734_SNP [dm3] 3L_7013634_SNP [dm6]	G	A	1.895e^-4	0.674	UPSTREAM Mp INTRON Mp
X	11056995	X_11056995_SNP [dm3] X_11162962_SNP [dm6]	T	C	1.905e^-4	0.674	UTR_3_PRIME Dlic
2R	2445170	2R_2445170_DEL [dm3] 2R_6557665_DEL [dm6]	ACAGGGCTTTCAAGTA...	A	1.908e^-4	0.674	INTRON jing
3L	5205390	3L_5205390_DEL [dm3] 3L_5212290_DEL [dm6]	GGGGTTTCTCTGGTTTTTCG...	G	1.912e^-4	0.674	INTRON shep
3L	15792507	3L_15792507_SNP [dm3] 3L_15799407_SNP [dm6]	C	T	1.914e^-4	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1433605	2L_1433605_SNP [dm3] 2L_1433605_SNP [dm6]	T	A	1.914e^-4	0.674	DOWNSTREAM snRNA:U3:22A INTERGENIC	TF binding site mE1_TFBS_cad
3R	21997245	3R_21997245_SNP [dm3] 3R_26171523_SNP [dm6]	G	A	1.914e^-4	0.674	INTRON CG31323
2L	17186472	2L_17186472_INS [dm3] 2L_17186472_INS [dm6]	G	GG	1.928e^-4	0.674	INTERGENIC
2R	8517281	2R_8517281_SNP [dm3] 2R_12629776_SNP [dm6]	C	T	1.931e^-4	0.674	SYNONYMOUS_CODING muskelin
2R	10155190	2R_10155190_SNP [dm3] 2R_14267685_SNP [dm6]	C	A	1.935e^-4	0.674	UPSTREAM CG8547 INTRON CG8547	TF binding site mE1_TFBS_Trl
3L	20622588	3L_20622588_SNP [dm3] 3L_20629488_SNP [dm6]	T	C	1.939e^-4	0.674	UPSTREAM CR44683 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	21061503	2L_21061503_SNP [dm3] 2L_21061503_SNP [dm6]	A	T	1.940e^-4	0.674	INTRON CG9265
3L	10504650	3L_10504650_INS [dm3] 3L_10511550_INS [dm6]	T	TT	1.942e^-4	0.674	INTRON A2bp1
2L	3340424	2L_3340424_SNP [dm3] 2L_3340424_SNP [dm6]	C	T	1.949e^-4	0.674	INTRON E23
2L	16173256	2L_16173256_DEL [dm3] 2L_16173256_DEL [dm6]	TCTT	T	1.955e^-4	0.674	INTRON Ca-alpha1D	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	16400278	2L_16400278_SNP [dm3] 2L_16400278_SNP [dm6]	T	G	1.958e^-4	0.674	UTR_3_PRIME CG5888
2R	10475868	2R_10475868_SNP [dm3] 2R_14588363_SNP [dm6]	A	G	1.960e^-4	0.674	DOWNSTREAM ttv INTERGENIC
3L	7416221	3L_7416221_SNP [dm3] 3L_7423121_SNP [dm6]	T	A	1.961e^-4	0.674	UPSTREAM CG42458 INTERGENIC
3L	12270689	3L_12270689_SNP [dm3] 3L_12277589_SNP [dm6]	C	T	1.964e^-4	0.674	UPSTREAM CG10426 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6720940	3L_6720940_SNP [dm3] 3L_6727840_SNP [dm6]	G	A	1.965e^-4	0.674	UPSTREAM CR45417 DOWNSTREAM dikar INTERGENIC	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_twi
3L	7177134	3L_7177134_SNP [dm3] 3L_7184034_SNP [dm6]	T	C	1.969e^-4	0.674	INTRON Dscam2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9807009	2R_9807009_SNP [dm3] 2R_13919504_SNP [dm6]	A	T	1.974e^-4	0.674	INTRON shot	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	7898839	2L_7898839_SNP [dm3] 2L_7898839_SNP [dm6]	C	A	1.976e^-4	0.674	INTRON Snoo	TF binding site mE1_TFBS_cad
3L	1976924	3L_1976924_DEL [dm3] 3L_1976924_DEL [dm6]	ATCCTATA	A	1.977e^-4	0.674	INTERGENIC
3L	5141130	3L_5141130_SNP [dm3] 3L_5148030_SNP [dm6]	A	G	1.980e^-4	0.674	NON_SYNONYMOUS_CODING Aats-ala-m	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	1211589	2R_1211589_INS [dm3] 2R_5324084_INS [dm6]	T	TATAA	1.986e^-4	0.674	INTRON sxc	transposable element FlyBase
3L	16640319	3L_16640319_SNP [dm3] 3L_16647219_SNP [dm6]	C	A	1.999e^-4	0.674	UTR_5_PRIME Abl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	12662621	2L_12662621_SNP [dm3] 2L_12662621_SNP [dm6]	G	A	2.007e^-4	0.674	INTRON pdm2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18536675	2R_18536675_SNP [dm3] 2R_22649170_SNP [dm6]	G	A	2.007e^-4	0.674	UTR_3_PRIME CG3746 UPSTREAM CG34445	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	2595302	3L_2595302_SNP [dm3] 3L_2595302_SNP [dm6]	G	A	2.010e^-4	0.674	UTR_3_PRIME dos UPSTREAM CG16984 DOWNSTREAM CG12182	TF binding site mE1_TFBS_cad
X	8781347	X_8781347_SNP [dm3] X_8887314_SNP [dm6]	A	G	2.011e^-4	0.674	INTRON Moe	TF binding site BDTNP1_TFBS_dl
3L	21122228	3L_21122228_SNP [dm3] 3L_21129128_SNP [dm6]	C	T	2.013e^-4	0.674	INTRON ko
3R	22064956	3R_22064956_SNP [dm3] 3R_26239234_SNP [dm6]	T	C	2.023e^-4	0.674	INTRON CR42745
3R	13964690	3R_13964690_SNP [dm3] 3R_18138968_SNP [dm6]	C	A	2.024e^-4	0.674	INTERGENIC
X	12160292	X_12160292_SNP [dm3] X_12266259_SNP [dm6]	C	A	2.026e^-4	0.674	INTRON Ten-a	TF binding site mE1_TFBS_inv
3R	13430181	3R_13430181_SNP [dm3] 3R_17604459_SNP [dm6]	C	T	2.028e^-4	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	16921376	2L_16921376_DEL [dm3] 2L_16921376_DEL [dm6]	GAG	G	2.034e^-4	0.674	INTERGENIC
3L	755307	3L_755307_SNP [dm3] 3L_755307_SNP [dm6]	C	T	2.036e^-4	0.674	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	10944453	2L_10944453_INS [dm3] 2L_10944453_INS [dm6]	A	ATGTT	2.039e^-4	0.674	UPSTREAM CR44493 INTRON dpr2
2R	19126503	2R_19126503_SNP [dm3] 2R_23238980_SNP [dm6]	A	G	2.039e^-4	0.674	INTERGENIC
2L	2623839	2L_2623839_SNP [dm3] 2L_2623839_SNP [dm6]	A	G	2.050e^-4	0.674	INTERGENIC
3R	13421953	3R_13421953_DEL [dm3] 3R_17596231_DEL [dm6]	TT	T	2.054e^-4	0.674	UPSTREAM CG7606 DOWNSTREAM Sgs5 INTERGENIC
3R	23382902	3R_23382902_SNP [dm3] 3R_27557180_SNP [dm6]	C	A	2.055e^-4	0.674	INTRON Klp98A	TF binding site BDTNP1_TFBS_z
3L	1406868	3L_1406868_INS [dm3] 3L_1406868_INS [dm6]	G	GTGTGTGT	2.058e^-4	0.674	INTRON Ptp61F
X	19350360	X_19350360_SNP [dm3] X_19456327_SNP [dm6]	G	C	2.066e^-4	0.674	INTRON kek5
3L	1136992	3L_1136992_SNP [dm3] 3L_1136992_SNP [dm6]	T	A	2.066e^-4	0.674	INTERGENIC
2L	16911601	2L_16911601_SNP [dm3] 2L_16911601_SNP [dm6]	C	T	2.071e^-4	0.674	SYNONYMOUS_CODING tweek	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7377450	3L_7377450_SNP [dm3] 3L_7384350_SNP [dm6]	A	G	2.075e^-4	0.674	SYNONYMOUS_CODING smid
2L	20525194	2L_20525194_DEL [dm3] 2L_20525194_DEL [dm6]	CC	C	2.078e^-4	0.674	INTERGENIC
3L	6242731	3L_6242731_SNP [dm3] 3L_6249631_SNP [dm6]	T	A	2.080e^-4	0.674	INTRON Best2
2L	20526245	2L_20526245_DEL [dm3] 2L_20526245_DEL [dm6]	TAAACAACATGTATCTAAAA...	T	2.086e^-4	0.674	INTERGENIC
2R	12489138	2R_12489138_SNP [dm3] 2R_16601633_SNP [dm6]	G	A	2.087e^-4	0.674	INTRON CG8303
X	14218080	X_14218080_SNP [dm3] X_14324047_SNP [dm6]	T	C	2.096e^-4	0.674	INTRON dpr8
2L	10205365	2L_10205365_SNP [dm3] 2L_10205365_SNP [dm6]	A	T	2.097e^-4	0.674	UTR_3_PRIME CG5734	TF binding site mE1_TFBS_cad
2L	12497479	2L_12497479_DEL [dm3] 2L_12497479_DEL [dm6]	AC	A	2.106e^-4	0.674	UPSTREAM t-cup INTRON bun
2L	16538561	2L_16538561_DEL [dm3] 2L_16538561_DEL [dm6]	GAG	A	2.108e^-4	0.674	INTERGENIC
2R	11219586	2R_11219586_SNP [dm3] 2R_15332081_SNP [dm6]	C	T	2.109e^-4	0.674	UPSTREAM CR44371 INTRON Hr51
3L	10061832	3L_10061832_SNP [dm3] 3L_10068732_SNP [dm6]	A	C	2.111e^-4	0.674	INTRON dpr6
X	16558408	X_16558408_SNP [dm3] X_16664375_SNP [dm6]	C	G	2.114e^-4	0.674	NON_SYNONYMOUS_CODING CG15865 INTRON r
3R	23121293	3R_23121293_SNP [dm3] 3R_27295571_SNP [dm6]	T	C	2.120e^-4	0.674	SYNONYMOUS_CODING CG3339	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1988997	2L_1988997_SNP [dm3] 2L_1988997_SNP [dm6]	G	A	2.123e^-4	0.674	UPSTREAM CR42874 DOWNSTREAM Npc2a INTERGENIC	TF binding site mE1_TFBS_cad
2L	16911485	2L_16911485_SNP [dm3] 2L_16911485_SNP [dm6]	T	A	2.126e^-4	0.674	NON_SYNONYMOUS_CODING tweek	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	24338591	3R_24338591_SNP [dm3] 3R_28512869_SNP [dm6]	G	C	2.127e^-4	0.674	INTRON Dhc98D	TF binding site mE1_TFBS_cad
X	8530809	X_8530809_SNP [dm3] X_8636776_SNP [dm6]	G	A	2.128e^-4	0.674	INTRON oc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	19712754	2R_19712754_SNP [dm3] 2R_23825231_SNP [dm6]	T	G	2.132e^-4	0.674	UPSTREAM CG4763 INTRON CG5549
3L	18051821	3L_18051821_SNP [dm3] 3L_18058721_SNP [dm6]	T	C	2.143e^-4	0.674	SYNONYMOUS_CODING Eip75B	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10539058	3L_10539058_SNP [dm3] 3L_10545958_SNP [dm6]	A	T	2.143e^-4	0.674	INTRON A2bp1
3L	910629	3L_910629_SNP [dm3] 3L_910629_SNP [dm6]	G	A	2.146e^-4	0.674	SYNONYMOUS_CODING nerfin-1
3R	21216821	3R_21216821_INS [dm3] 3R_25391099_INS [dm6]	A	AG	2.148e^-4	0.674	INTRON Fur1
3R	25204892	3R_25204892_SNP [dm3] 3R_29379170_SNP [dm6]	G	A	2.148e^-4	0.674	INTRON Ptp99A
3R	18395041	3R_18395041_SNP [dm3] 3R_22569319_SNP [dm6]	T	C	2.154e^-4	0.674	UPSTREAM CG33110 INTERGENIC	TF binding site mE1_TFBS_inv
3R	22109146	3R_22109146_SNP [dm3] 3R_26283424_SNP [dm6]	C	G	2.158e^-4	0.674	INTERGENIC
2R	17204164	2R_17204164_SNP [dm3] 2R_21316659_SNP [dm6]	A	T	2.163e^-4	0.674	INTRON CG9485	TF binding site mE1_TFBS_cad
3L	7777255	3L_7777255_SNP [dm3] 3L_7784155_SNP [dm6]	T	C	2.167e^-4	0.674	INTRON CG32369
X	9636300	X_9636300_SNP [dm3] X_9742267_SNP [dm6]	G	C	2.176e^-4	0.674	INTRON Sp1
3L	10615944	3L_10615944_SNP [dm3] 3L_10622844_SNP [dm6]	A	G	2.180e^-4	0.674	DOWNSTREAM CG42521 INTERGENIC
3R	22276027	3R_22276027_SNP [dm3] 3R_26450305_SNP [dm6]	T	G	2.184e^-4	0.674	SYNONYMOUS_CODING Hex-t1 UPSTREAM Hex-t2
3L	2005723	3L_2005723_SNP [dm3] 3L_2005723_SNP [dm6]	G	A	2.190e^-4	0.674	UPSTREAM CG42841 INTERGENIC
3L	12101980	3L_12101980_SNP [dm3] 3L_12108880_SNP [dm6]	G	T	2.191e^-4	0.674	INTERGENIC
2L	12011185	2L_12011185_SNP [dm3] 2L_12011185_SNP [dm6]	T	G	2.192e^-4	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_Dll mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
X	14757352	X_14757352_DEL [dm3] X_14863319_DEL [dm6]	CT	C	2.196e^-4	0.674	UTR_3_PRIME CG9518 INTRON Flo2
3L	2835384	3L_2835384_SNP [dm3] 3L_2835384_SNP [dm6]	G	A	2.199e^-4	0.674	INTRON CG43444
3L	2005742	3L_2005742_SNP [dm3] 3L_2005742_SNP [dm6]	A	G	2.203e^-4	0.674	UPSTREAM CG42841 INTERGENIC
3L	18944079	3L_18944079_SNP [dm3] 3L_18950979_SNP [dm6]	G	T	2.206e^-4	0.674	INTRON CG6836
2R	18867673	2R_18867673_SNP [dm3] 2R_22980150_SNP [dm6]	G	T	2.218e^-4	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21050474	2L_21050474_SNP [dm3] 2L_21050474_SNP [dm6]	T	G	2.219e^-4	0.674	INTRON CG42238	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	13796934	2R_13796934_INS [dm3] 2R_17909429_INS [dm6]	C	CC	2.222e^-4	0.674	INTRON Elk
3L	18841227	3L_18841227_SNP [dm3] 3L_18848127_SNP [dm6]	T	A	2.226e^-4	0.674	INTERGENIC	TF binding site mE1_TFBS_bab1
3L	1976935	3L_1976935_SNP [dm3] 3L_1976935_SNP [dm6]	A	G	2.228e^-4	0.674	INTERGENIC
2L	1989508	2L_1989508_SNP [dm3] 2L_1989508_SNP [dm6]	C	T	2.230e^-4	0.674	DOWNSTREAM Npc2a EXON CR42874
X	8317421	X_8317421_SNP [dm3] X_8423388_SNP [dm6]	A	C	2.232e^-4	0.674	UTR_5_PRIME Trf2	TF binding site BDTNP1_TFBS_dl
2L	16173295	2L_16173295_SNP [dm3] 2L_16173295_SNP [dm6]	A	T	2.234e^-4	0.674	INTRON Ca-alpha1D	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	18658668	X_18658668_SNP [dm3] X_18764635_SNP [dm6]	A	T	2.243e^-4	0.674	UTR_3_PRIME CCKLR-17D3
2L	12414766	2L_12414766_MNP [dm3] 2L_12414766_MNP [dm6]	TGA	CAG	2.245e^-4	0.674	INTRON vir-1
2L	4512570	2L_4512570_SNP [dm3] 2L_4512570_SNP [dm6]	A	G	2.247e^-4	0.674	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15758061	3L_15758061_INS [dm3] 3L_15764961_INS [dm6]	A	ACGA	2.251e^-4	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10014257	3L_10014257_SNP [dm3] 3L_10021157_SNP [dm6]	G	C	2.252e^-4	0.674	INTRON dpr6
3R	16520981	3R_16520981_SNP [dm3] 3R_20695259_SNP [dm6]	C	T	2.260e^-4	0.674	INTRON Oamb
3L	4428272	3L_4428272_SNP [dm3] 3L_4428272_SNP [dm6]	A	T	2.261e^-4	0.674	INTERGENIC
2R	13873031	2R_13873031_SNP [dm3] 2R_17985526_SNP [dm6]	A	C	2.264e^-4	0.674	INTRON dpr13
2L	16755884	2L_16755884_SNP [dm3] 2L_16755884_SNP [dm6]	T	C	2.266e^-4	0.674	SYNONYMOUS_CODING yellow-b
3R	27117542	3R_27117542_SNP [dm3] 3R_31291820_SNP [dm6]	T	C	2.270e^-4	0.674	INTERGENIC
3L	5131441	3L_5131441_SNP [dm3] 3L_5138341_SNP [dm6]	A	T	2.277e^-4	0.674	DOWNSTREAM Prpk INTRON CG4611	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	12076920	3R_12076920_SNP [dm3] 3R_16251198_SNP [dm6]	C	G	2.288e^-4	0.674	INTRON tara	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26053320	3R_26053320_SNP [dm3] 3R_30227598_SNP [dm6]	C	T	2.298e^-4	0.674	INTERGENIC
2R	6399040	2R_6399040_SNP [dm3] 2R_10511535_SNP [dm6]	G	T	2.301e^-4	0.674	INTRON lola
2R	2396496	2R_2396496_SNP [dm3] 2R_6508991_SNP [dm6]	G	C	2.303e^-4	0.674	INTRON jing EXON CR45127	TF binding site mE1_TFBS_cad
3R	21774371	3R_21774371_SNP [dm3] 3R_25948649_SNP [dm6]	A	C	2.303e^-4	0.674	INTRON CCAP-R
3L	16974674	3L_16974674_SNP [dm3] 3L_16981574_SNP [dm6]	G	A	2.305e^-4	0.674	SYNONYMOUS_CODING Exn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14437250	3R_14437250_SNP [dm3] 3R_18611528_SNP [dm6]	A	T	2.305e^-4	0.674	INTRON qin & 1 other
X	10824248	X_10824248_INS [dm3] X_10930215_INS [dm6]	C	CCATCGGGAAAA...	2.307e^-4	0.674	UPSTREAM Myo10A DOWNSTREAM CG2145 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
3R	18393481	3R_18393481_DEL [dm3] 3R_22567759_DEL [dm6]	ATCGTAGATC	A	2.308e^-4	0.674	INTERGENIC
3L	1996808	3L_1996808_SNP [dm3] 3L_1996808_SNP [dm6]	G	A	2.309e^-4	0.674	INTERGENIC
2R	8925257	2R_8925257_SNP [dm3] 2R_13037752_SNP [dm6]	C	T	2.310e^-4	0.674	INTERGENIC
X	15116235	X_15116235_SNP [dm3] X_15222202_SNP [dm6]	T	A	2.314e^-4	0.674	DOWNSTREAM CG43076 INTERGENIC
3R	20126258	3R_20126258_SNP [dm3] 3R_24300536_SNP [dm6]	C	T	2.327e^-4	0.674	INTRON crb	TF binding site BDTNP1_TFBS_dl
2R	6575411	2R_6575411_SNP [dm3] 2R_10687906_SNP [dm6]	A	G	2.331e^-4	0.674	INTRON stan
X	19886490	X_19886490_DEL [dm3] X_19992457_DEL [dm6]	GTGTGGGAGTTGGGAGGTGG...	G	2.333e^-4	0.674	INTERGENIC
X	18754285	X_18754285_SNP [dm3] X_18860252_SNP [dm6]	G	A	2.337e^-4	0.674	UPSTREAM CG32544 DOWNSTREAM CG7288 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	10345706	2R_10345706_SNP [dm3] 2R_14458201_SNP [dm6]	C	T	2.343e^-4	0.674	UPSTREAM Oaz INTRON Oaz	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	9025151	X_9025151_SNP [dm3] X_9131118_SNP [dm6]	A	T	2.347e^-4	0.674	INTRON fend	TF binding site BDTNP1_TFBS_dl
X	6917326	X_6917326_SNP [dm3] X_7023293_SNP [dm6]	T	C	2.348e^-4	0.674	INTRON CG12541
2R	9046785	2R_9046785_SNP [dm3] 2R_13159280_SNP [dm6]	G	C	2.353e^-4	0.674	UPSTREAM TppII & 1 other INTRON CG34439	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13482344	2R_13482344_SNP [dm3] 2R_17594839_SNP [dm6]	A	C	2.358e^-4	0.674	UPSTREAM CG11423 INTRON lack
X	13751850	X_13751850_SNP [dm3] X_13857817_SNP [dm6]	A	T	2.359e^-4	0.674	DOWNSTREAM mamo INTRON mamo
3R	23839291	3R_23839291_SNP [dm3] 3R_28013569_SNP [dm6]	C	G	2.362e^-4	0.674	INTERGENIC
3R	14439122	3R_14439122_SNP [dm3] 3R_18613400_SNP [dm6]	C	G	2.363e^-4	0.674	INTRON qin & 1 other
X	12388116	X_12388116_SNP [dm3] X_12494083_SNP [dm6]	G	A	2.384e^-4	0.674	DOWNSTREAM Mks1 INTERGENIC
3L	3439390	3L_3439390_SNP [dm3] 3L_3439390_SNP [dm6]	A	G	2.387e^-4	0.674	INTRON eIF5B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	915327	2L_915327_SNP [dm3] 2L_915327_SNP [dm6]	T	C	2.389e^-4	0.674	SPLICE_SITE_REGION GluRIIC SYNONYMOUS_CODING GluRIIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5944919	3L_5944919_SNP [dm3] 3L_5951819_SNP [dm6]	G	A	2.392e^-4	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	2118135	3L_2118135_SNP [dm3] 3L_2118135_SNP [dm6]	A	G	2.394e^-4	0.674	INTRON zormin
2L	9523873	2L_9523873_SNP [dm3] 2L_9523873_SNP [dm6]	G	A	2.396e^-4	0.674	INTRON Oatp30B	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
X	6536985	X_6536985_DEL [dm3] X_6642952_DEL [dm6]	TAAGAT	G	2.400e^-4	0.674	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	23382904	3R_23382904_SNP [dm3] 3R_27557182_SNP [dm6]	T	G	2.400e^-4	0.674	INTRON Klp98A	TF binding site BDTNP1_TFBS_z
2L	12494076	2L_12494076_SNP [dm3] 2L_12494076_SNP [dm6]	T	C	2.402e^-4	0.674	UPSTREAM bun INTRON bun
3L	2005740	3L_2005740_SNP [dm3] 3L_2005740_SNP [dm6]	A	C	2.404e^-4	0.674	UPSTREAM CG42841 INTERGENIC
2R	14610983	2R_14610983_SNP [dm3] 2R_18723478_SNP [dm6]	A	T	2.413e^-4	0.674	INTRON Hs3st-A
2R	20384295	2R_20384295_SNP [dm3] 2R_24496772_SNP [dm6]	A	G	2.429e^-4	0.674	SYNONYMOUS_CODING Crtp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13964634	3R_13964634_SNP [dm3] 3R_18138912_SNP [dm6]	G	A	2.430e^-4	0.674	INTERGENIC
3L	2002869	3L_2002869_SNP [dm3] 3L_2002869_SNP [dm6]	G	A	2.433e^-4	0.674	DOWNSTREAM CG42841 INTERGENIC
3L	1999350	3L_1999350_SNP [dm3] 3L_1999350_SNP [dm6]	T	A	2.437e^-4	0.674	INTERGENIC
3L	10535801	3L_10535801_SNP [dm3] 3L_10542701_SNP [dm6]	A	C	2.441e^-4	0.674	INTRON A2bp1
3L	10237044	3L_10237044_SNP [dm3] 3L_10243944_SNP [dm6]	G	A	2.441e^-4	0.674	NON_SYNONYMOUS_CODING Or67c UPSTREAM CR44541
3L	14108927	3L_14108927_DEL [dm3] 3L_14115827_DEL [dm6]	ACT	A	2.444e^-4	0.674	INTRON Sox21b
2L	9185996	2L_9185996_SNP [dm3] 2L_9185996_SNP [dm6]	C	A	2.449e^-4	0.674	INTRON tai	TF binding site BDTNP1_TFBS_prd
2R	4031122	2R_4031122_SNP [dm3] 2R_8143617_SNP [dm6]	T	C	2.451e^-4	0.674	INTRON Lpin	TF binding site mE1_TFBS_HSA
X	19685610	X_19685610_SNP [dm3] X_19791577_SNP [dm6]	G	T	2.451e^-4	0.674	INTERGENIC
X	10921856	X_10921856_SNP [dm3] X_11027823_SNP [dm6]	C	T	2.453e^-4	0.674	INTRON CG42339
3R	11889037	3R_11889037_SNP [dm3] 3R_16063315_SNP [dm6]	G	C	2.457e^-4	0.674	SYNONYMOUS_CODING CG10185	TF binding site mE1_TFBS_HSA
3R	24338586	3R_24338586_SNP [dm3] 3R_28512864_SNP [dm6]	C	T	2.461e^-4	0.674	INTRON Dhc98D	TF binding site mE1_TFBS_cad
X	5765335	X_5765335_SNP [dm3] X_5871302_SNP [dm6]	T	A	2.464e^-4	0.674	INTRON GAA1	TF binding site mE1_TFBS_cad
3R	18393499	3R_18393499_SNP [dm3] 3R_22567777_SNP [dm6]	A	C	2.466e^-4	0.674	INTERGENIC
3R	13964067	3R_13964067_SNP [dm3] 3R_18138345_SNP [dm6]	T	A	2.471e^-4	0.674	INTERGENIC
3L	12001583	3L_12001583_SNP [dm3] 3L_12008483_SNP [dm6]	C	G	2.477e^-4	0.674	UTR_3_PRIME rols DOWNSTREAM CG6928	TF binding site mE1_TFBS_cad
3R	18624051	3R_18624051_SNP [dm3] 3R_22798329_SNP [dm6]	G	A	2.477e^-4	0.674	INTERGENIC
3L	18949583	3L_18949583_SNP [dm3] 3L_18956483_SNP [dm6]	T	A	2.482e^-4	0.674	INTERGENIC
3L	7852125	3L_7852125_SNP [dm3] 3L_7859025_SNP [dm6]	T	C	2.483e^-4	0.674	INTRON Pdp1
2R	16988288	2R_16988288_SNP [dm3] 2R_21100783_SNP [dm6]	A	G	2.489e^-4	0.674	SYNONYMOUS_CODING CG34396	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_inv
3L	17370870	3L_17370870_INS [dm3] 3L_17377770_INS [dm6]	G	GTG	2.489e^-4	0.674	INTRON Cad74A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	14916601	3R_14916601_SNP [dm3] 3R_19090879_SNP [dm6]	A	T	2.491e^-4	0.674	INTRON cdi
X	17202036	X_17202036_DEL [dm3] X_17308003_DEL [dm6]	ATT	A	2.495e^-4	0.674	INTERGENIC
2L	2622639	2L_2622639_SNP [dm3] 2L_2622639_SNP [dm6]	C	T	2.495e^-4	0.674	INTERGENIC
X	16911963	X_16911963_SNP [dm3] X_17017930_SNP [dm6]	T	G	2.498e^-4	0.674	INTRON CG45002
2L	16977490	2L_16977490_SNP [dm3] 2L_16977490_SNP [dm6]	A	C	2.498e^-4	0.674	INTRON beat-IIIb
3L	1998949	3L_1998949_SNP [dm3] 3L_1998949_SNP [dm6]	G	C	2.499e^-4	0.674	INTERGENIC
3L	6290649	3L_6290649_SNP [dm3] 3L_6297549_SNP [dm6]	A	T	2.500e^-4	0.674	INTERGENIC
2L	17442129	2L_17442129_SNP [dm3] 2L_17442129_SNP [dm6]	G	A	2.509e^-4	0.674	SYNONYMOUS_CODING dl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17183670	2L_17183670_SNP [dm3] 2L_17183670_SNP [dm6]	G	T	2.512e^-4	0.674	DOWNSTREAM CG31750 INTERGENIC
3L	13702490	3L_13702490_DEL [dm3] 3L_13709390_DEL [dm6]	TT	T	2.515e^-4	0.674	INTRON bru-3
3R	4243704	3R_4243704_SNP [dm3] 3R_8417982_SNP [dm6]	C	T	2.516e^-4	0.674	INTRON CG45263
3L	6931269	3L_6931269_SNP [dm3] 3L_6938169_SNP [dm6]	A	G	2.517e^-4	0.674	DOWNSTREAM CR45414 & 1 other INTERGENIC
3R	18250479	3R_18250479_SNP [dm3] 3R_22424757_SNP [dm6]	T	G	2.526e^-4	0.674	UTR_5_PRIME pinta UPSTREAM pinta DOWNSTREAM CG13847
3R	23382906	3R_23382906_SNP [dm3] 3R_27557184_SNP [dm6]	T	G	2.530e^-4	0.674	INTRON Klp98A	TF binding site BDTNP1_TFBS_z
3L	11388347	3L_11388347_SNP [dm3] 3L_11395247_SNP [dm6]	G	C	2.534e^-4	0.674	NON_SYNONYMOUS_CODING CG11726
3L	10534584	3L_10534584_SNP [dm3] 3L_10541484_SNP [dm6]	G	T	2.538e^-4	0.674	INTRON A2bp1
3R	22748374	3R_22748374_DEL [dm3] 3R_26922652_DEL [dm6]	GAG	G	2.542e^-4	0.674	INTRON sda
2R	8519759	2R_8519759_SNP [dm3] 2R_12632254_SNP [dm6]	C	T	2.544e^-4	0.674	UTR_5_PRIME muskelin UPSTREAM CG33792	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	5702689	X_5702689_SNP [dm3] X_5808656_SNP [dm6]	G	C	2.547e^-4	0.674	UPSTREAM Prosbeta2R1 INTERGENIC
3R	20169727	3R_20169727_SNP [dm3] 3R_24344005_SNP [dm6]	C	A	2.547e^-4	0.674	UTR_3_PRIME CG5746 DOWNSTREAM Ms
2R	6961048	2R_6961048_SNP [dm3] 2R_11073543_SNP [dm6]	G	A	2.553e^-4	0.674	INTRON luna	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	3666152	2L_3666152_SNP [dm3] 2L_3666152_SNP [dm6]	G	A	2.555e^-4	0.674	INTRON CG34340
3L	17236375	3L_17236375_SNP [dm3] 3L_17243275_SNP [dm6]	G	T	2.561e^-4	0.674	UPSTREAM CG7707 INTERGENIC
2R	19490606	2R_19490606_SNP [dm3] 2R_23603083_SNP [dm6]	A	G	2.564e^-4	0.674	SYNONYMOUS_CODING CG5398 UPSTREAM CG43209 DOWNSTREAM CG17664	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4096005	2R_4096005_SNP [dm3] 2R_8208500_SNP [dm6]	C	T	2.575e^-4	0.674	INTRON LRP1
3R	12066021	3R_12066021_SNP [dm3] 3R_16240299_SNP [dm6]	A	G	2.578e^-4	0.674	INTRON tara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	21997473	3R_21997473_SNP [dm3] 3R_26171751_SNP [dm6]	T	A	2.589e^-4	0.674	INTRON CG31323
3R	3483643	3R_3483643_SNP [dm3] 3R_7657921_SNP [dm6]	T	A	2.589e^-4	0.674	UPSTREAM Nlg1 INTERGENIC	TF binding site mE1_TFBS_inv
2R	15992777	2R_15992777_SNP [dm3] 2R_20105272_SNP [dm6]	C	A	2.589e^-4	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	12410483	3L_12410483_SNP [dm3] 3L_12417383_SNP [dm6]	C	G	2.589e^-4	0.674	UTR_5_PRIME ArfGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	14661036	X_14661036_SNP [dm3] X_14767003_SNP [dm6]	T	A	2.595e^-4	0.674	INTERGENIC
X	14218077	X_14218077_SNP [dm3] X_14324044_SNP [dm6]	T	C	2.604e^-4	0.674	INTRON dpr8
2L	3859806	2L_3859806_SNP [dm3] 2L_3859806_SNP [dm6]	A	G	2.605e^-4	0.674	INTERGENIC
3L	4428307	3L_4428307_INS [dm3] 3L_4428307_INS [dm6]	A	AA	2.608e^-4	0.674	INTERGENIC
X	9025436	X_9025436_SNP [dm3] X_9131403_SNP [dm6]	T	C	2.612e^-4	0.674	INTRON fend	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	2437029	3L_2437029_SNP [dm3] 3L_2437029_SNP [dm6]	G	A	2.614e^-4	0.674	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2001547	3L_2001547_SNP [dm3] 3L_2001547_SNP [dm6]	T	C	2.616e^-4	0.674	INTERGENIC
3R	22270989	3R_22270989_SNP [dm3] 3R_26445267_SNP [dm6]	G	C	2.618e^-4	0.674	INTRON tx
2L	1548166	2L_1548166_SNP [dm3] 2L_1548166_SNP [dm6]	C	T	2.621e^-4	0.674	INTERGENIC
3R	25110305	3R_25110305_SNP [dm3] 3R_29284583_SNP [dm6]	G	A	2.621e^-4	0.674	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
2R	6890869	2R_6890869_SNP [dm3] 2R_11003364_SNP [dm6]	C	T	2.628e^-4	0.674	INTRON luna
X	3803309	X_3803309_SNP [dm3] X_3909276_SNP [dm6]	A	G	2.639e^-4	0.674	INTRON CG42541
3R	24338592	3R_24338592_SNP [dm3] 3R_28512870_SNP [dm6]	C	G	2.641e^-4	0.674	INTRON Dhc98D	TF binding site mE1_TFBS_cad
2L	7505893	2L_7505893_SNP [dm3] 2L_7505893_SNP [dm6]	C	G	2.642e^-4	0.674	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Kr
3R	26190012	3R_26190012_SNP [dm3] 3R_30364290_SNP [dm6]	T	G	2.642e^-4	0.674	UTR_3_PRIME hdc
2R	6507091	2R_6507091_SNP [dm3] 2R_10619586_SNP [dm6]	G	T	2.645e^-4	0.674	INTRON CG11883
X	11349829	X_11349829_SNP [dm3] X_11455796_SNP [dm6]	G	A	2.645e^-4	0.674	SYNONYMOUS_CODING HP5	TF binding site mE1_TFBS_sens
3R	18968168	3R_18968168_SNP [dm3] 3R_23142446_SNP [dm6]	T	G	2.648e^-4	0.674	UPSTREAM hh INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
X	17114147	X_17114147_SNP [dm3] X_17220114_SNP [dm6]	A	T	2.649e^-4	0.674	DOWNSTREAM CG12998 INTERGENIC
3L	12101979	3L_12101979_SNP [dm3] 3L_12108879_SNP [dm6]	A	G	2.650e^-4	0.674	INTERGENIC
2L	19100397	2L_19100397_SNP [dm3] 2L_19100397_SNP [dm6]	C	T	2.652e^-4	0.674	INTRON Lim3
3R	25520244	3R_25520244_SNP [dm3] 3R_29694522_SNP [dm6]	A	G	2.653e^-4	0.674	INTRON dmrt99B
3L	7185082	3L_7185082_SNP [dm3] 3L_7191982_SNP [dm6]	A	G	2.665e^-4	0.674	INTERGENIC
2L	17548469	2L_17548469_SNP [dm3] 2L_17548469_SNP [dm6]	T	A	2.673e^-4	0.674	DOWNSTREAM CR45697 INTERGENIC
2R	17203523	2R_17203523_SNP [dm3] 2R_21316018_SNP [dm6]	A	C	2.674e^-4	0.674	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	9195197	X_9195197_DEL [dm3] X_9301164_DEL [dm6]	ATTTGCTTTTTG...	A	2.674e^-4	0.674	INTRON lz
2L	5512421	2L_5512421_SNP [dm3] 2L_5512421_SNP [dm6]	A	G	2.683e^-4	0.674	INTERGENIC
2R	5326573	2R_5326573_SNP [dm3] 2R_9439068_SNP [dm6]	C	A	2.684e^-4	0.674	INTRON ced-6	TF binding site mE1_TFBS_cad
3L	1136985	3L_1136985_MNP [dm3] 3L_1136985_MNP [dm6]	TTT	CAC	2.687e^-4	0.674	INTERGENIC
3R	16438685	3R_16438685_SNP [dm3] 3R_20612963_SNP [dm6]	C	G	2.689e^-4	0.674	SPLICE_SITE_REGION CG15923 DOWNSTREAM bon INTRON CG15923
2L	17098477	2L_17098477_SNP [dm3] 2L_17098477_SNP [dm6]	G	C	2.692e^-4	0.674	INTERGENIC
3L	10722788	3L_10722788_SNP [dm3] 3L_10729688_SNP [dm6]	A	C	2.692e^-4	0.674	INTERGENIC
2L	20330020	2L_20330020_SNP [dm3] 2L_20330020_SNP [dm6]	G	A	2.704e^-4	0.674	INTRON spir
3R	18393517	3R_18393517_SNP [dm3] 3R_22567795_SNP [dm6]	C	T	2.706e^-4	0.674	INTERGENIC
2R	4917095	2R_4917095_SNP [dm3] 2R_9029590_SNP [dm6]	T	A	2.708e^-4	0.674	INTRON CG8170
3R	16220170	3R_16220170_SNP [dm3] 3R_20394448_SNP [dm6]	G	C	2.717e^-4	0.674	INTRON Gfrl
3L	3785118	3L_3785118_SNP [dm3] 3L_3785118_SNP [dm6]	G	A	2.717e^-4	0.674	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_sens
3R	14916525	3R_14916525_SNP [dm3] 3R_19090803_SNP [dm6]	T	G	2.721e^-4	0.674	INTRON cdi
3R	15098354	3R_15098354_SNP [dm3] 3R_19272632_SNP [dm6]	G	T	2.721e^-4	0.674	INTERGENIC
3R	16533989	3R_16533989_SNP [dm3] 3R_20708267_SNP [dm6]	C	A	2.726e^-4	0.674	INTRON Oamb
3R	21286317	3R_21286317_SNP [dm3] 3R_25460595_SNP [dm6]	T	A	2.728e^-4	0.674	INTRON Fur1
X	16911951	X_16911951_SNP [dm3] X_17017918_SNP [dm6]	A	C	2.730e^-4	0.674	INTRON CG45002
3L	10776821	3L_10776821_SNP [dm3] 3L_10783721_SNP [dm6]	T	A	2.731e^-4	0.674	UPSTREAM CR44544 INTERGENIC	TF binding site mE1_TFBS_inv
2L	12011248	2L_12011248_SNP [dm3] 2L_12011248_SNP [dm6]	C	T	2.732e^-4	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_Dll mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
2L	16136747	2L_16136747_DEL [dm3] 2L_16136747_DEL [dm6]	TT	T	2.734e^-4	0.674	UPSTREAM CR44871 INTERGENIC
2L	16665443	2L_16665443_SNP [dm3] 2L_16665443_SNP [dm6]	C	T	2.734e^-4	0.674	NON_SYNONYMOUS_CODING Trpgamma	TF binding site mE1_TFBS_cad
2L	16756872	2L_16756872_SNP [dm3] 2L_16756872_SNP [dm6]	T	C	2.739e^-4	0.674	INTRON yellow-b
3L	5303977	3L_5303977_SNP [dm3] 3L_5310877_SNP [dm6]	T	C	2.742e^-4	0.674	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	17016829	3L_17016829_SNP [dm3] 3L_17023729_SNP [dm6]	T	C	2.743e^-4	0.674	UTR_5_PRIME a10 UPSTREAM CG6652 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2R	13279405	2R_13279405_SNP [dm3] 2R_17391900_SNP [dm6]	A	T	2.745e^-4	0.674	UPSTREAM tRNA:CR30233 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad
2L	4779048	2L_4779048_SNP [dm3] 2L_4779048_SNP [dm6]	A	G	2.750e^-4	0.674	INTRON CG15630
3L	2540728	3L_2540728_SNP [dm3] 3L_2540728_SNP [dm6]	A	G	2.753e^-4	0.674	INTRON Spn
3R	6828446	3R_6828446_SNP [dm3] 3R_11002724_SNP [dm6]	G	C	2.754e^-4	0.674	INTRON CG34114
2L	20611968	2L_20611968_SNP [dm3] 2L_20611968_SNP [dm6]	G	T	2.758e^-4	0.674	INTRON CR44909
2R	14022372	2R_14022372_SNP [dm3] 2R_18134867_SNP [dm6]	A	T	2.767e^-4	0.674	UPSTREAM Pcl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16130997	2L_16130997_SNP [dm3] 2L_16130997_SNP [dm6]	A	T	2.769e^-4	0.674	INTERGENIC
2L	16130998	2L_16130998_SNP [dm3] 2L_16130998_SNP [dm6]	G	T	2.769e^-4	0.674	INTERGENIC
2L	16131011	2L_16131011_SNP [dm3] 2L_16131011_SNP [dm6]	A	C	2.769e^-4	0.674	INTERGENIC
X	14849104	X_14849104_SNP [dm3] X_14955071_SNP [dm6]	G	T	2.770e^-4	0.674	UTR_5_PRIME CG9030 UPSTREAM eag	TF binding site mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	2447882	2L_2447882_SNP [dm3] 2L_2447882_SNP [dm6]	C	T	2.773e^-4	0.674	INTRON dpp	enhancer FlyBase regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4240359	2R_4240359_SNP [dm3] 2R_8352854_SNP [dm6]	C	T	2.775e^-4	0.674	INTRON pdm3
3R	16528999	3R_16528999_SNP [dm3] 3R_20703277_SNP [dm6]	T	C	2.776e^-4	0.674	INTRON Oamb
3R	13780318	3R_13780318_SNP [dm3] 3R_17954596_SNP [dm6]	G	A	2.802e^-4	0.674	INTRON cpo	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	21281390	X_21281390_SNP [dm3] X_21410363_SNP [dm6]	G	T	2.816e^-4	0.674	INTRON CR45003
2R	14542307	2R_14542307_INS [dm3] 2R_18654802_INS [dm6]	A	AC	2.817e^-4	0.674	INTRON SP2637	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	1151762	3L_1151762_SNP [dm3] 3L_1151762_SNP [dm6]	G	C	2.818e^-4	0.674	INTRON bab2
3L	14370480	3L_14370480_SNP [dm3] 3L_14377380_SNP [dm6]	A	T	2.825e^-4	0.674	INTERGENIC
3R	8623554	3R_8623554_SNP [dm3] 3R_12797832_SNP [dm6]	G	A	2.827e^-4	0.674	INTERGENIC
3R	22345503	3R_22345503_SNP [dm3] 3R_26519781_SNP [dm6]	A	C	2.829e^-4	0.674	INTRON plum & 1 other
2R	2811860	2R_2811860_SNP [dm3] 2R_6924355_SNP [dm6]	C	T	2.837e^-4	0.674	SYNONYMOUS_CODING CG3358 DOWNSTREAM mim	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	11198379	2L_11198379_SNP [dm3] 2L_11198379_SNP [dm6]	A	G	2.850e^-4	0.674	INTRON Ca-beta
2R	17203370	2R_17203370_SNP [dm3] 2R_21315865_SNP [dm6]	G	A	2.850e^-4	0.674	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad
3L	19956368	3L_19956368_SNP [dm3] 3L_19963268_SNP [dm6]	A	G	2.851e^-4	0.674	INTRON Ac76E
2L	6888954	2L_6888954_SNP [dm3] 2L_6888954_SNP [dm6]	T	A	2.857e^-4	0.674	INTRON Nlg2
2L	7076685	2L_7076685_SNP [dm3] 2L_7076685_SNP [dm6]	G	T	2.859e^-4	0.674	INTRON Pvf2
X	8983805	X_8983805_DEL [dm3] X_9089772_DEL [dm6]	CATGGACTCCGATTTCGCC...	C	2.873e^-4	0.674	DOWNSTREAM CG6999 INTRON CG7033	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
3L	4992098	3L_4992098_SNP [dm3] 3L_4992098_SNP [dm6]	G	C	2.877e^-4	0.674	INTRON Con	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13964640	3R_13964640_SNP [dm3] 3R_18138918_SNP [dm6]	G	A	2.879e^-4	0.674	INTERGENIC	transposable element FlyBase
3R	9830656	3R_9830656_SNP [dm3] 3R_14004934_SNP [dm6]	G	A	2.880e^-4	0.674	INTRON rdx
2L	16967114	2L_16967114_SNP [dm3] 2L_16967114_SNP [dm6]	T	G	2.882e^-4	0.674	INTERGENIC
3L	10535721	3L_10535721_SNP [dm3] 3L_10542621_SNP [dm6]	T	A	2.883e^-4	0.674	INTRON A2bp1
2L	11910409	2L_11910409_SNP [dm3] 2L_11910409_SNP [dm6]	C	G	2.886e^-4	0.674	INTRON Pde1c
3R	18968088	3R_18968088_SNP [dm3] 3R_23142366_SNP [dm6]	G	A	2.888e^-4	0.674	UPSTREAM hh INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	22270984	3R_22270984_SNP [dm3] 3R_26445262_SNP [dm6]	A	G	2.890e^-4	0.674	INTRON tx
2L	7898751	2L_7898751_SNP [dm3] 2L_7898751_SNP [dm6]	G	A	2.894e^-4	0.674	INTRON Snoo	TF binding site mE1_TFBS_cad
2L	7898754	2L_7898754_SNP [dm3] 2L_7898754_SNP [dm6]	A	T	2.894e^-4	0.674	INTRON Snoo	TF binding site mE1_TFBS_cad
X	12294757	X_12294757_SNP [dm3] X_12400724_SNP [dm6]	A	C	2.895e^-4	0.674	INTERGENIC
3L	18753910	3L_18753910_INS [dm3] 3L_18760810_INS [dm6]	C	CTCTCCC	2.906e^-4	0.674	INTRON ftz-f1	TF binding site mE1_TFBS_Trl
3L	16693940	3L_16693940_SNP [dm3] 3L_16700840_SNP [dm6]	A	C	2.918e^-4	0.674	INTRON Lasp & 1 other
2R	19234388	2R_19234388_SNP [dm3] 2R_23346865_SNP [dm6]	C	T	2.922e^-4	0.674	SYNONYMOUS_CODING CG9863 INTRON CG3502	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	14843611	X_14843611_SNP [dm3] X_14949578_SNP [dm6]	A	C	2.922e^-4	0.674	INTRON pdgy
2R	16814970	2R_16814970_SNP [dm3] 2R_20927465_SNP [dm6]	G	C	2.922e^-4	0.674	INTRON Rx
2R	16241362	2R_16241362_DEL [dm3] 2R_20353857_DEL [dm6]	AGCCA	A	2.923e^-4	0.674	DOWNSTREAM CG11192 INTERGENIC
2L	12013583	2L_12013583_SNP [dm3] 2L_12013583_SNP [dm6]	T	C	2.924e^-4	0.674	DOWNSTREAM CG6734 EXON CR44588
3L	12310506	3L_12310506_SNP [dm3] 3L_12317406_SNP [dm6]	T	C	2.931e^-4	0.674	INTERGENIC
3R	7708276	3R_7708276_SNP [dm3] 3R_11882554_SNP [dm6]	A	G	2.934e^-4	0.674	UPSTREAM CG31368 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	14844658	X_14844658_SNP [dm3] X_14950625_SNP [dm6]	A	C	2.934e^-4	0.674	UTR_5_PRIME pdgy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	4058751	3L_4058751_SNP [dm3] 3L_4058751_SNP [dm6]	C	A	2.935e^-4	0.674	UTR_3_PRIME CG1136	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	2266747	3L_2266747_SNP [dm3] 3L_2266747_SNP [dm6]	T	C	2.940e^-4	0.674	SYNONYMOUS_CODING CG13806 UPSTREAM ecd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6252079	3L_6252079_SNP [dm3] 3L_6258979_SNP [dm6]	T	G	2.943e^-4	0.674	UPSTREAM CG10163 DOWNSTREAM ImpL3 INTERGENIC
2L	11198376	2L_11198376_SNP [dm3] 2L_11198376_SNP [dm6]	A	T	2.953e^-4	0.674	INTRON Ca-beta
2L	3577867	2L_3577867_SNP [dm3] 2L_3577867_SNP [dm6]	G	T	2.954e^-4	0.674	DOWNSTREAM sob INTERGENIC
3L	9933813	3L_9933813_INS [dm3] 3L_9940713_INS [dm6]	A	TT	2.955e^-4	0.674	INTRON CG34356
X	6651409	X_6651409_INS [dm3] X_6757376_INS [dm6]	T	TT	2.958e^-4	0.674	INTRON CG14438	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
X	8382326	X_8382326_SNP [dm3] X_8488293_SNP [dm6]	G	A	2.967e^-4	0.674	SYNONYMOUS_CODING otu
2R	10091071	2R_10091071_SNP [dm3] 2R_14203566_SNP [dm6]	C	T	2.974e^-4	0.674	SYNONYMOUS_CODING Sox15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3970504	2L_3970504_SNP [dm3] 2L_3970504_SNP [dm6]	A	G	2.974e^-4	0.674	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	19712756	2R_19712756_SNP [dm3] 2R_23825233_SNP [dm6]	C	G	2.975e^-4	0.674	UPSTREAM CG4763 INTRON CG5549
X	17202032	X_17202032_SNP [dm3] X_17307999_SNP [dm6]	A	G	2.981e^-4	0.674	INTERGENIC
3L	7185336	3L_7185336_SNP [dm3] 3L_7192236_SNP [dm6]	T	G	2.982e^-4	0.674	INTERGENIC
2L	14378375	2L_14378375_SNP [dm3] 2L_14378375_SNP [dm6]	A	C	2.983e^-4	0.674	UTR_3_PRIME ppk
2R	8911761	2R_8911761_SNP [dm3] 2R_13024256_SNP [dm6]	A	G	2.985e^-4	0.674	INTERGENIC
3L	19080853	3L_19080853_SNP [dm3] 3L_19087753_SNP [dm6]	A	G	2.985e^-4	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3L	2002607	3L_2002607_DEL [dm3] 3L_2002607_DEL [dm6]	CTAC	C	2.988e^-4	0.674	DOWNSTREAM CG42841 INTERGENIC
2R	4223461	2R_4223461_SNP [dm3] 2R_8335956_SNP [dm6]	C	A	2.989e^-4	0.674	INTRON pdm3
2L	16758894	2L_16758894_SNP [dm3] 2L_16758894_SNP [dm6]	A	G	2.991e^-4	0.674	SPLICE_SITE_REGION ppk17 DOWNSTREAM yellow-b INTRON ppk17
X	3325187	X_3325187_SNP [dm3] X_3431154_SNP [dm6]	G	C	2.991e^-4	0.674	INTRON CR44999 & 1 other
3L	2904392	3L_2904392_SNP [dm3] 3L_2904392_SNP [dm6]	G	A	2.993e^-4	0.674	INTRON Shab
X	18415305	X_18415305_SNP [dm3] X_18521272_SNP [dm6]	C	T	3.002e^-4	0.674	UTR_3_PRIME CG6481 DOWNSTREAM Aats-his INTRON Bx
X	14661041	X_14661041_SNP [dm3] X_14767008_SNP [dm6]	T	A	3.004e^-4	0.674	INTERGENIC
3L	17294891	3L_17294891_SNP [dm3] 3L_17301791_SNP [dm6]	A	T	3.024e^-4	0.674	INTERGENIC
X	2142045	X_2142045_SNP [dm3] X_2248012_SNP [dm6]	T	A	3.024e^-4	0.674	SYNONYMOUS_CODING crn DOWNSTREAM Or2a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13294934	3L_13294934_SNP [dm3] 3L_13301834_SNP [dm6]	T	A	3.026e^-4	0.674	SYNONYMOUS_CODING SP UPSTREAM CR43911 DOWNSTREAM CR44557
X	8956566	X_8956566_SNP [dm3] X_9062533_SNP [dm6]	T	A	3.037e^-4	0.674	INTRON CG15365
3R	17234094	3R_17234094_SNP [dm3] 3R_21408372_SNP [dm6]	G	A	3.037e^-4	0.674	UPSTREAM CheB93b DOWNSTREAM CheB93a INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	18427415	2L_18427415_SNP [dm3] 2L_18427415_SNP [dm6]	C	T	3.044e^-4	0.674	INTERGENIC
3R	25133834	3R_25133834_SNP [dm3] 3R_29308112_SNP [dm6]	T	A	3.046e^-4	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	9275389	3R_9275389_SNP [dm3] 3R_13449667_SNP [dm6]	A	T	3.048e^-4	0.674	UPSTREAM CG14372 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	16760854	2L_16760854_SNP [dm3] 2L_16760854_SNP [dm6]	C	A	3.050e^-4	0.674	UPSTREAM ppk17 INTERGENIC
3L	4080002	3L_4080002_SNP [dm3] 3L_4080002_SNP [dm6]	G	A	3.056e^-4	0.674	INTRON Gad1
3L	7377723	3L_7377723_SNP [dm3] 3L_7384623_SNP [dm6]	G	A	3.057e^-4	0.674	INTRON smid	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6249902	3L_6249902_SNP [dm3] 3L_6256802_SNP [dm6]	T	C	3.064e^-4	0.674	UPSTREAM Best2 DOWNSTREAM CG10163 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	18393503	3R_18393503_SNP [dm3] 3R_22567781_SNP [dm6]	T	A	3.065e^-4	0.674	INTERGENIC
2L	1617410	2L_1617410_DEL [dm3] 2L_1617410_DEL [dm6]	AA	A	3.070e^-4	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	10051980	2L_10051980_DEL [dm3] 2L_10051980_DEL [dm6]	ACA	A	3.076e^-4	0.674	DOWNSTREAM CG33301 EXON CR44874
3L	13478605	3L_13478605_SNP [dm3] 3L_13485505_SNP [dm6]	G	A	3.082e^-4	0.674	SYNONYMOUS_CODING Abp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	10132774	2L_10132774_SNP [dm3] 2L_10132774_SNP [dm6]	G	A	3.086e^-4	0.674	INTRON CG44153
2L	12864015	2L_12864015_SNP [dm3] 2L_12864015_SNP [dm6]	C	T	3.086e^-4	0.674	INTERGENIC
3L	2005736	3L_2005736_SNP [dm3] 3L_2005736_SNP [dm6]	G	A	3.089e^-4	0.674	UPSTREAM CG42841 INTERGENIC
3L	12069284	3L_12069284_SNP [dm3] 3L_12076184_SNP [dm6]	T	C	3.091e^-4	0.674	INTRON Sema-5c
2R	17204000	2R_17204000_SNP [dm3] 2R_21316495_SNP [dm6]	C	T	3.091e^-4	0.674	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	17204015	2R_17204015_SNP [dm3] 2R_21316510_SNP [dm6]	C	G	3.091e^-4	0.674	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	12174003	2R_12174003_SNP [dm3] 2R_16286498_SNP [dm6]	G	A	3.092e^-4	0.674	NON_SYNONYMOUS_CODING CG9068 UPSTREAM CR43728
3R	23873586	3R_23873586_SNP [dm3] 3R_28047864_SNP [dm6]	T	C	3.095e^-4	0.674	INTRON CG34362
2R	17412470	2R_17412470_SNP [dm3] 2R_21524965_SNP [dm6]	G	A	3.098e^-4	0.674	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	11492899	2R_11492899_SNP [dm3] 2R_15605394_SNP [dm6]	A	T	3.099e^-4	0.674	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1995801	3L_1995801_SNP [dm3] 3L_1995801_SNP [dm6]	G	T	3.099e^-4	0.674	INTERGENIC
3R	17234190	3R_17234190_SNP [dm3] 3R_21408468_SNP [dm6]	T	G	3.108e^-4	0.674	UPSTREAM CheB93b DOWNSTREAM CheB93a INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	8517874	2R_8517874_SNP [dm3] 2R_12630369_SNP [dm6]	G	A	3.124e^-4	0.674	INTRON muskelin
2L	17186424	2L_17186424_SNP [dm3] 2L_17186424_SNP [dm6]	C	T	3.129e^-4	0.674	INTERGENIC
2L	8119076	2L_8119076_SNP [dm3] 2L_8119076_SNP [dm6]	A	T	3.134e^-4	0.674	INTRON mon2
2R	8919349	2R_8919349_SNP [dm3] 2R_13031844_SNP [dm6]	G	A	3.135e^-4	0.674	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14448357	3R_14448357_INS [dm3] 3R_18622635_INS [dm6]	T	TTTATTTATACCCCAATTAG...	3.137e^-4	0.674	INTRON qin	TF binding site mE1_TFBS_inv
3R	18588490	3R_18588490_SNP [dm3] 3R_22762768_SNP [dm6]	T	C	3.138e^-4	0.674	SYNONYMOUS_CODING CG4723 INTRON Usp12-46 & 1 other
X	14371574	X_14371574_SNP [dm3] X_14477541_SNP [dm6]	G	T	3.141e^-4	0.674	INTRON CG9411
3R	14550388	3R_14550388_SNP [dm3] 3R_18724666_SNP [dm6]	T	A	3.141e^-4	0.674	DOWNSTREAM CG7714 INTRON Cha
3L	12077278	3L_12077278_DEL [dm3] 3L_12084178_DEL [dm6]	CATTTACC	C	3.149e^-4	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
X	18867827	X_18867827_SNP [dm3] X_18973794_SNP [dm6]	C	T	3.151e^-4	0.674	INTRON CG43759
3L	10534098	3L_10534098_SNP [dm3] 3L_10540998_SNP [dm6]	A	C	3.152e^-4	0.674	INTRON A2bp1
2L	9305388	2L_9305388_SNP [dm3] 2L_9305388_SNP [dm6]	C	A	3.153e^-4	0.674	UPSTREAM CR42844 INTERGENIC
2L	12302560	2L_12302560_SNP [dm3] 2L_12302560_SNP [dm6]	C	G	3.157e^-4	0.674	INTRON aret
2R	6894697	2R_6894697_SNP [dm3] 2R_11007192_SNP [dm6]	G	A	3.157e^-4	0.674	INTRON luna
2L	4801137	2L_4801137_SNP [dm3] 2L_4801137_SNP [dm6]	C	G	3.162e^-4	0.674	INTRON Clect27
X	9025086	X_9025086_SNP [dm3] X_9131053_SNP [dm6]	A	G	3.171e^-4	0.674	INTRON fend	TF binding site BDTNP1_TFBS_dl
3R	26615022	3R_26615022_SNP [dm3] 3R_30789300_SNP [dm6]	G	T	3.175e^-4	0.674	DOWNSTREAM wts & 1 other INTERGENIC
2R	4197605	2R_4197605_SNP [dm3] 2R_8310100_SNP [dm6]	C	A	3.175e^-4	0.674	DOWNSTREAM CR44449 EXON CR44448
X	15116222	X_15116222_SNP [dm3] X_15222189_SNP [dm6]	C	T	3.175e^-4	0.674	DOWNSTREAM CG43076 INTERGENIC
3R	2714104	3R_2714104_SNP [dm3] 3R_6888382_SNP [dm6]	T	C	3.177e^-4	0.674	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	8588455	3R_8588455_SNP [dm3] 3R_12762733_SNP [dm6]	A	T	3.182e^-4	0.674	INTRON beat-Vc
2L	17061965	2L_17061965_SNP [dm3] 2L_17061965_SNP [dm6]	G	T	3.196e^-4	0.674	INTERGENIC
3L	11213503	3L_11213503_SNP [dm3] 3L_11220403_SNP [dm6]	A	C	3.197e^-4	0.674	INTRON CG42671	TF binding site mE1_TFBS_cad
X	10804647	X_10804647_DEL [dm3] X_10910614_DEL [dm6]	AA	A	3.199e^-4	0.674	INTRON CG43901	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20576959	X_20576959_SNP [dm3] X_20705932_SNP [dm6]	G	A	3.202e^-4	0.674	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	9352741	3L_9352741_DEL [dm3] 3L_9359641_DEL [dm6]	ATCTTCAGAAAAGAACATCT...	A	3.202e^-4	0.674	UTR_3_PRIME CG32039 UPSTREAM UGP & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
X	19685728	X_19685728_SNP [dm3] X_19791695_SNP [dm6]	G	A	3.202e^-4	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	8518222	2R_8518222_SNP [dm3] 2R_12630717_SNP [dm6]	C	T	3.205e^-4	0.674	SYNONYMOUS_CODING muskelin	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18588520	3R_18588520_SNP [dm3] 3R_22762798_SNP [dm6]	T	C	3.216e^-4	0.674	SYNONYMOUS_CODING CG4723 INTRON Usp12-46 & 1 other
2R	3909186	2R_3909186_SNP [dm3] 2R_8021681_SNP [dm6]	C	T	3.218e^-4	0.674	EXON CR45267	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	13135364	X_13135364_SNP [dm3] X_13241331_SNP [dm6]	A	T	3.220e^-4	0.674	INTRON mew
2L	4778958	2L_4778958_SNP [dm3] 2L_4778958_SNP [dm6]	C	A	3.230e^-4	0.674	INTRON CG15630
3L	14120991	3L_14120991_SNP [dm3] 3L_14127891_SNP [dm6]	A	C	3.241e^-4	0.674	INTRON Sox21b
2L	17176414	2L_17176414_SNP [dm3] 2L_17176414_SNP [dm6]	G	C	3.242e^-4	0.674	UPSTREAM Gr36a DOWNSTREAM CR44394 INTERGENIC
3L	10439751	3L_10439751_DEL [dm3] 3L_10446651_DEL [dm6]	TT	T	3.246e^-4	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	2003985	3L_2003985_SNP [dm3] 3L_2003985_SNP [dm6]	C	T	3.249e^-4	0.674	INTRON CG42841
3R	25181872	3R_25181872_SNP [dm3] 3R_29356150_SNP [dm6]	A	C	3.249e^-4	0.674	EXON CR45547
3R	14444878	3R_14444878_SNP [dm3] 3R_18619156_SNP [dm6]	C	T	3.251e^-4	0.674	INTRON qin & 1 other	TF binding site mE1_TFBS_cad
3L	7171072	3L_7171072_SNP [dm3] 3L_7177972_SNP [dm6]	G	A	3.253e^-4	0.674	INTRON Dscam2
3L	7171106	3L_7171106_SNP [dm3] 3L_7178006_SNP [dm6]	C	T	3.253e^-4	0.674	INTRON Dscam2
X	15116250	X_15116250_INS [dm3] X_15222217_INS [dm6]	C	CT	3.255e^-4	0.674	DOWNSTREAM CG43076 INTERGENIC
3L	12613437	3L_12613437_SNP [dm3] 3L_12620337_SNP [dm6]	C	G	3.259e^-4	0.674	NON_SYNONYMOUS_CODING caup	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19962779	2L_19962779_SNP [dm3] 2L_19962779_SNP [dm6]	C	A	3.261e^-4	0.674	UPSTREAM CG13965 INTRON CG16772	TF binding site mE1_TFBS_HSA
X	8631659	X_8631659_SNP [dm3] X_8737626_SNP [dm6]	G	T	3.263e^-4	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
3L	18944674	3L_18944674_SNP [dm3] 3L_18951574_SNP [dm6]	C	T	3.265e^-4	0.674	INTRON CG6836
3L	7271614	3L_7271614_SNP [dm3] 3L_7278514_SNP [dm6]	T	C	3.266e^-4	0.674	INTRON unc-13-4A
3L	1998016	3L_1998016_SNP [dm3] 3L_1998016_SNP [dm6]	C	T	3.269e^-4	0.674	INTERGENIC
2L	4950176	2L_4950176_SNP [dm3] 2L_4950176_SNP [dm6]	G	A	3.279e^-4	0.674	SYNONYMOUS_CODING Jon25Biii UPSTREAM jet	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17254746	3L_17254746_SNP [dm3] 3L_17261646_SNP [dm6]	C	T	3.280e^-4	0.674	INTRON CR43870
3L	11337640	3L_11337640_SNP [dm3] 3L_11344540_SNP [dm6]	C	T	3.286e^-4	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8925147	2R_8925147_SNP [dm3] 2R_13037642_SNP [dm6]	T	C	3.289e^-4	0.674	INTERGENIC
2R	18985842	2R_18985842_SNP [dm3] 2R_23098319_SNP [dm6]	T	C	3.290e^-4	0.674	INTERGENIC
3L	17235651	3L_17235651_SNP [dm3] 3L_17242551_SNP [dm6]	A	T	3.298e^-4	0.674	UPSTREAM CG6512 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
X	17202035	X_17202035_SNP [dm3] X_17308002_SNP [dm6]	A	C	3.300e^-4	0.674	INTERGENIC
X	17200903	X_17200903_SNP [dm3] X_17306870_SNP [dm6]	C	T	3.308e^-4	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14176734	2L_14176734_SNP [dm3] 2L_14176734_SNP [dm6]	A	T	3.310e^-4	0.674	INTRON CG43333
2R	6389995	2R_6389995_SNP [dm3] 2R_10502490_SNP [dm6]	T	G	3.313e^-4	0.674	INTRON lola
2L	10856177	2L_10856177_SNP [dm3] 2L_10856177_SNP [dm6]	G	T	3.313e^-4	0.674	SYNONYMOUS_CODING Dnz1 DOWNSTREAM ial	TF binding site mE1_TFBS_cad
3R	19538242	3R_19538242_SNP [dm3] 3R_23712520_SNP [dm6]	A	C	3.313e^-4	0.674	DOWNSTREAM nau INTRON CG10300
2R	3908588	2R_3908588_SNP [dm3] 2R_8021083_SNP [dm6]	C	T	3.322e^-4	0.674	EXON CR45267	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	1996943	3L_1996943_SNP [dm3] 3L_1996943_SNP [dm6]	C	T	3.330e^-4	0.674	INTERGENIC
3R	13964566	3R_13964566_DEL [dm3] 3R_18138844_DEL [dm6]	CCCAGA	TTTC	3.333e^-4	0.674	INTERGENIC
3R	15462450	3R_15462450_SNP [dm3] 3R_19636728_SNP [dm6]	G	A	3.336e^-4	0.674	SYNONYMOUS_CODING subdued DOWNSTREAM CG34138
3L	11214499	3L_11214499_SNP [dm3] 3L_11221399_SNP [dm6]	T	C	3.337e^-4	0.674	INTRON CG42671
3L	6549747	3L_6549747_SNP [dm3] 3L_6556647_SNP [dm6]	C	A	3.341e^-4	0.674	INTRON CG18769
3R	22786546	3R_22786546_SNP [dm3] 3R_26960824_SNP [dm6]	G	A	3.345e^-4	0.674	DOWNSTREAM Tsp97E INTERGENIC
2L	10051975	2L_10051975_SNP [dm3] 2L_10051975_SNP [dm6]	G	C	3.349e^-4	0.674	DOWNSTREAM CG33301 EXON CR44874
3R	25950247	3R_25950247_SNP [dm3] 3R_30124525_SNP [dm6]	C	A	3.349e^-4	0.674	NON_SYNONYMOUS_CODING CG45073	TF binding site mE1_TFBS_inv
2L	7491544	2L_7491544_SNP [dm3] 2L_7491544_SNP [dm6]	G	A	3.351e^-4	0.674	INTRON Ziz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	22897733	3L_22897733_SNP [dm3] 3L_22904633_SNP [dm6]	T	G	3.357e^-4	0.674	NON_SYNONYMOUS_CODING BoYb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13769590	3L_13769590_SNP [dm3] 3L_13776490_SNP [dm6]	C	T	3.359e^-4	0.674	INTRON bru-3
2L	19690688	2L_19690688_SNP [dm3] 2L_19690688_SNP [dm6]	T	C	3.360e^-4	0.674	INTRON Lar
2L	10834253	2L_10834253_SNP [dm3] 2L_10834253_SNP [dm6]	A	T	3.368e^-4	0.674	INTRON Nos
3R	18393493	3R_18393493_SNP [dm3] 3R_22567771_SNP [dm6]	A	T	3.369e^-4	0.674	INTERGENIC
3R	18393496	3R_18393496_SNP [dm3] 3R_22567774_SNP [dm6]	T	G	3.369e^-4	0.674	INTERGENIC
2L	8477987	2L_8477987_SNP [dm3] 2L_8477987_SNP [dm6]	T	A	3.372e^-4	0.674	UTR_3_PRIME CheA29a UPSTREAM d INTRON d	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	6379235	2R_6379235_SNP [dm3] 2R_10491730_SNP [dm6]	C	T	3.373e^-4	0.674	UTR_3_PRIME lola INTRON lola
2L	20042180	2L_20042180_SNP [dm3] 2L_20042180_SNP [dm6]	G	C	3.373e^-4	0.674	INTRON sNPF
3R	22805206	3R_22805206_SNP [dm3] 3R_26979484_SNP [dm6]	G	A	3.373e^-4	0.674	INTRON CG14253
3L	4057750	3L_4057750_SNP [dm3] 3L_4057750_SNP [dm6]	A	G	3.375e^-4	0.674	NON_SYNONYMOUS_CODING CG1136	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	19001902	X_19001902_SNP [dm3] X_19107869_SNP [dm6]	C	T	3.376e^-4	0.674	INTERGENIC	transposable element FlyBase
2L	10930647	2L_10930647_SNP [dm3] 2L_10930647_SNP [dm6]	G	T	3.381e^-4	0.674	INTRON dpr2
3L	9304408	3L_9304408_SNP [dm3] 3L_9311308_SNP [dm6]	A	T	3.384e^-4	0.674	INTERGENIC
2R	17596515	2R_17596515_SNP [dm3] 2R_21709010_SNP [dm6]	T	A	3.392e^-4	0.674	DOWNSTREAM CG30403 INTRON HmgD EXON CR44749	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	25960436	3R_25960436_SNP [dm3] 3R_30134714_SNP [dm6]	G	C	3.398e^-4	0.674	UPSTREAM Tpi DOWNSTREAM AdoR INTERGENIC
X	16558366	X_16558366_SNP [dm3] X_16664333_SNP [dm6]	G	C	3.401e^-4	0.674	SYNONYMOUS_CODING CG15865 INTRON r
3L	21473441	3L_21473441_SNP [dm3] 3L_21480341_SNP [dm6]	A	G	3.402e^-4	0.674	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8403048	2R_8403048_SNP [dm3] 2R_12515543_SNP [dm6]	C	T	3.403e^-4	0.674	SYNONYMOUS_CODING CG13151 UPSTREAM achi	TF binding site mE1_TFBS_cad
X	5765323	X_5765323_SNP [dm3] X_5871290_SNP [dm6]	T	C	3.410e^-4	0.674	INTRON GAA1	TF binding site mE1_TFBS_cad
2R	20309172	2R_20309172_SNP [dm3] 2R_24421649_SNP [dm6]	C	G	3.423e^-4	0.674	INTRON prom	TF binding site mE1_TFBS_chinmo
X	9299377	X_9299377_SNP [dm3] X_9405344_SNP [dm6]	G	T	3.424e^-4	0.674	INTRON mgl
2R	11769465	2R_11769465_SNP [dm3] 2R_15881960_SNP [dm6]	C	T	3.424e^-4	0.674	INTRON sli
3L	7271827	3L_7271827_SNP [dm3] 3L_7278727_SNP [dm6]	T	A	3.426e^-4	0.674	INTRON unc-13-4A
2L	11198377	2L_11198377_SNP [dm3] 2L_11198377_SNP [dm6]	A	T	3.427e^-4	0.674	INTRON Ca-beta
3L	2796934	3L_2796934_SNP [dm3] 3L_2796934_SNP [dm6]	C	T	3.428e^-4	0.674	INTRON CG43444	TF binding site mE1_TFBS_inv
3R	25204767	3R_25204767_SNP [dm3] 3R_29379045_SNP [dm6]	G	C	3.429e^-4	0.674	INTRON Ptp99A
3L	2005718	3L_2005718_SNP [dm3] 3L_2005718_SNP [dm6]	G	C	3.438e^-4	0.674	UPSTREAM CG42841 INTERGENIC
2R	14237921	2R_14237921_SNP [dm3] 2R_18350416_SNP [dm6]	G	C	3.446e^-4	0.674	INTRON sbb
3L	6940298	3L_6940298_INS [dm3] 3L_6947198_INS [dm6]	A	ATA	3.454e^-4	0.674	INTRON tow
3R	25940366	3R_25940366_SNP [dm3] 3R_30114644_SNP [dm6]	T	C	3.458e^-4	0.674	INTRON sima
3L	2005795	3L_2005795_SNP [dm3] 3L_2005795_SNP [dm6]	A	G	3.460e^-4	0.674	UPSTREAM CG42841 INTERGENIC
3R	25595107	3R_25595107_DEL [dm3] 3R_29769385_DEL [dm6]	CACAGATC	C	3.463e^-4	0.674	INTRON kay
3L	6786326	3L_6786326_INS [dm3] 3L_6793226_INS [dm6]	T	TT	3.467e^-4	0.674	UTR_3_PRIME vvl
2L	8475184	2L_8475184_SNP [dm3] 2L_8475184_SNP [dm6]	T	G	3.468e^-4	0.674	INTRON d
2R	11526550	2R_11526550_SNP [dm3] 2R_15639045_SNP [dm6]	A	G	3.475e^-4	0.674	INTRON CG42524
3R	26443704	3R_26443704_SNP [dm3] 3R_30617982_SNP [dm6]	A	G	3.485e^-4	0.674	DOWNSTREAM CG44954 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	9370993	3L_9370993_DEL [dm3] 3L_9377893_DEL [dm6]	TT	T	3.494e^-4	0.674	UTR_3_PRIME Hsp67Ba UPSTREAM CR43481 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	13250327	2R_13250327_SNP [dm3] 2R_17362822_SNP [dm6]	T	A	3.499e^-4	0.674	SYNONYMOUS_CODING mbl INTRON mbl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5373520	3L_5373520_SNP [dm3] 3L_5380420_SNP [dm6]	C	T	3.503e^-4	0.674	SYNONYMOUS_CODING Ir64a
3L	4428253	3L_4428253_INS [dm3] 3L_4428253_INS [dm6]	T	TT	3.513e^-4	0.674	INTERGENIC
2R	8519086	2R_8519086_SNP [dm3] 2R_12631581_SNP [dm6]	T	A	3.515e^-4	0.674	SYNONYMOUS_CODING muskelin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	14842647	X_14842647_SNP [dm3] X_14948614_SNP [dm6]	T	C	3.518e^-4	0.674	INTRON pdgy
3L	5600025	3L_5600025_SNP [dm3] 3L_5606925_SNP [dm6]	T	A	3.518e^-4	0.674	UTR_3_PRIME mthl2 DOWNSTREAM Eaf6
3L	5600026	3L_5600026_SNP [dm3] 3L_5606926_SNP [dm6]	A	T	3.518e^-4	0.674	UTR_3_PRIME mthl2 DOWNSTREAM Eaf6
2L	12688452	2L_12688452_SNP [dm3] 2L_12688452_SNP [dm6]	T	A	3.520e^-4	0.674	INTERGENIC
2R	8380832	2R_8380832_SNP [dm3] 2R_12493327_SNP [dm6]	G	A	3.525e^-4	0.674	INTRON fdl
3R	25107299	3R_25107299_SNP [dm3] 3R_29281577_SNP [dm6]	T	C	3.528e^-4	0.674	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
3L	2005729	3L_2005729_SNP [dm3] 3L_2005729_SNP [dm6]	A	T	3.530e^-4	0.674	UPSTREAM CG42841 INTERGENIC
2R	9067434	2R_9067434_SNP [dm3] 2R_13179929_SNP [dm6]	T	A	3.535e^-4	0.674	UTR_5_PRIME CG17724 UTR_3_PRIME Kdm4B & 1 other INTRON CG17724 & 1 other
2R	12782260	2R_12782260_SNP [dm3] 2R_16894755_SNP [dm6]	T	A	3.536e^-4	0.674	DOWNSTREAM mir-990 INTRON CG8910
3L	7272578	3L_7272578_SNP [dm3] 3L_7279478_SNP [dm6]	G	A	3.537e^-4	0.674	INTRON unc-13-4A
2L	13911315	2L_13911315_SNP [dm3] 2L_13911315_SNP [dm6]	A	C	3.539e^-4	0.674	UPSTREAM Acyp INTRON Ance-2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4522897	2L_4522897_SNP [dm3] 2L_4522897_SNP [dm6]	T	C	3.543e^-4	0.674	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	15666604	X_15666604_SNP [dm3] X_15772571_SNP [dm6]	T	C	3.543e^-4	0.674	NON_SYNONYMOUS_CODING CG33172 UPSTREAM CG43672
2R	17204135	2R_17204135_SNP [dm3] 2R_21316630_SNP [dm6]	C	T	3.550e^-4	0.674	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad
3L	18946770	3L_18946770_SNP [dm3] 3L_18953670_SNP [dm6]	G	A	3.556e^-4	0.674	START_GAINED CG6836 UTR_5_PRIME CG6836
3R	17613200	3R_17613200_SNP [dm3] 3R_21787478_SNP [dm6]	T	A	3.559e^-4	0.674	INTRON CASK
2L	8191083	2L_8191083_SNP [dm3] 2L_8191083_SNP [dm6]	T	A	3.566e^-4	0.674	UTR_3_PRIME CG8475 UPSTREAM CG34134 DOWNSTREAM Piezo	TF binding site mE1_TFBS_cad
3R	14837810	3R_14837810_SNP [dm3] 3R_19012088_SNP [dm6]	T	C	3.572e^-4	0.674	INTRON gukh	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_inv
X	3731702	X_3731702_DEL [dm3] X_3837669_DEL [dm6]	TAACTGTAACTAGT...	T	3.573e^-4	0.674	INTRON ec	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	5729562	3L_5729562_SNP [dm3] 3L_5736462_SNP [dm6]	T	C	3.579e^-4	0.674	INTRON sif
3R	4344538	3R_4344538_SNP [dm3] 3R_8518816_SNP [dm6]	A	T	3.583e^-4	0.674	UPSTREAM CG11737 INTRON CG11737
3R	26878414	3R_26878414_SNP [dm3] 3R_31052692_SNP [dm6]	C	T	3.586e^-4	0.674	UTR_3_PRIME l_3_03670 DOWNSTREAM Aph-4	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	10854881	2L_10854881_SNP [dm3] 2L_10854881_SNP [dm6]	G	A	3.588e^-4	0.674	UTR_3_PRIME Dnz1 DOWNSTREAM CG43129
2R	8320836	2R_8320836_SNP [dm3] 2R_12433331_SNP [dm6]	T	A	3.590e^-4	0.674	NON_SYNONYMOUS_CODING DUBAI	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	15956124	X_15956124_SNP [dm3] X_16062091_SNP [dm6]	C	T	3.595e^-4	0.674	SYNONYMOUS_CODING CG12395 DOWNSTREAM Muc14A
3R	26780417	3R_26780417_SNP [dm3] 3R_30954695_SNP [dm6]	A	G	3.596e^-4	0.674	INTERGENIC
3R	26785264	3R_26785264_SNP [dm3] 3R_30959542_SNP [dm6]	G	A	3.596e^-4	0.674	UPSTREAM CG15548 INTERGENIC
3L	11127856	3L_11127856_SNP [dm3] 3L_11134756_SNP [dm6]	G	C	3.600e^-4	0.674	UPSTREAM CG14143 DOWNSTREAM CG42575 INTERGENIC
X	17216009	X_17216009_SNP [dm3] X_17321976_SNP [dm6]	A	G	3.603e^-4	0.674	INTRON B-H2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_HSA
2R	17203991	2R_17203991_SNP [dm3] 2R_21316486_SNP [dm6]	C	G	3.607e^-4	0.674	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	17016060	3L_17016060_SNP [dm3] 3L_17022960_SNP [dm6]	C	T	3.611e^-4	0.674	UPSTREAM CG6652 DOWNSTREAM a10 INTERGENIC
2R	9599303	2R_9599303_SNP [dm3] 2R_13711798_SNP [dm6]	A	G	3.611e^-4	0.674	INTRON fas	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	8586669	2L_8586669_SNP [dm3] 2L_8586669_SNP [dm6]	A	G	3.616e^-4	0.674	INTRON Sema-1a
2R	15393560	2R_15393560_SNP [dm3] 2R_19506055_SNP [dm6]	C	A	3.621e^-4	0.674	DOWNSTREAM tRNA:H:56E & 1 other INTERGENIC
2R	2572319	2R_2572319_SNP [dm3] 2R_6684814_SNP [dm6]	T	C	3.627e^-4	0.674	UTR_3_PRIME Tdc2 DOWNSTREAM CG15909 INTRON CG9422
2L	16650643	2L_16650643_SNP [dm3] 2L_16650643_SNP [dm6]	G	A	3.628e^-4	0.674	INTRON CG42389
3R	12977197	3R_12977197_SNP [dm3] 3R_17151475_SNP [dm6]	T	A	3.632e^-4	0.674	SYNONYMOUS_CODING CG5285 UPSTREAM CG5292	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_ttk
3R	13964074	3R_13964074_SNP [dm3] 3R_18138352_SNP [dm6]	T	A	3.636e^-4	0.674	INTERGENIC
2L	3445638	2L_3445638_SNP [dm3] 2L_3445638_SNP [dm6]	T	C	3.642e^-4	0.674	UPSTREAM CG2772 INTERGENIC
3L	10506313	3L_10506313_SNP [dm3] 3L_10513213_SNP [dm6]	G	A	3.645e^-4	0.674	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi
3R	18393519	3R_18393519_SNP [dm3] 3R_22567797_SNP [dm6]	T	A	3.663e^-4	0.674	INTERGENIC
3L	17236376	3L_17236376_SNP [dm3] 3L_17243276_SNP [dm6]	G	T	3.664e^-4	0.674	UPSTREAM CG7707 INTERGENIC

By genomic position
Variant impact
Gene name

Mitochon_Mapped_Read phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results