DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=9.838e^-23)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	<

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	124.3983	6.8922e-29
In_2L_t	9.1312	0.0104

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1875 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	9201997	2R_9201997_SNP [dm3] 2R_13314492_SNP [dm6]	C	T	3.659e^-8	0.069	INTERGENIC
3R	25556588	3R_25556588_SNP [dm3] 3R_29730866_SNP [dm6]	C	G	1.045e^-7	0.098	INTRON Kul	TF binding site mE1_TFBS_cad
X	20341562	X_20341562_DEL [dm3] X_20470535_DEL [dm6]	TG	T	4.086e^-7	0.238	UTR_3_PRIME RhoGAP19D DOWNSTREAM GstT3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9203115	2R_9203115_SNP [dm3] 2R_13315610_SNP [dm6]	G	A	5.301e^-7	0.238	INTERGENIC
2R	9209279	2R_9209279_SNP [dm3] 2R_13321774_SNP [dm6]	G	A	6.399e^-7	0.238	INTERGENIC
X	18382068	X_18382068_SNP [dm3] X_18488035_SNP [dm6]	C	G	7.621e^-7	0.238	INTRON CG15046	TF binding site mE1_TFBS_chinmo
3R	25557404	3R_25557404_SNP [dm3] 3R_29731682_SNP [dm6]	A	G	1.042e^-6	0.279	SYNONYMOUS_CODING Kul UTR_3_PRIME Kul	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11136911	2R_11136911_SNP [dm3] 2R_15249406_SNP [dm6]	C	T	1.577e^-6	0.331	SYNONYMOUS_CODING scb	TF binding site mE1_TFBS_cad
3L	5733948	3L_5733948_SNP [dm3] 3L_5740848_SNP [dm6]	C	G	1.588e^-6	0.331	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_chinmo
X	17416531	X_17416531_SNP [dm3] X_17522498_SNP [dm6]	T	C	1.978e^-6	0.371	INTRON CG43658
3L	5733936	3L_5733936_SNP [dm3] 3L_5740836_SNP [dm6]	A	G	3.116e^-6	0.531	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_chinmo
3R	25557449	3R_25557449_SNP [dm3] 3R_29731727_SNP [dm6]	T	C	3.803e^-6	0.594	SYNONYMOUS_CODING Kul UTR_3_PRIME Kul	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25557524	3R_25557524_SNP [dm3] 3R_29731802_SNP [dm6]	G	A	4.506e^-6	0.598	SYNONYMOUS_CODING Kul UTR_3_PRIME Kul	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10831410	2R_10831410_SNP [dm3] 2R_14943905_SNP [dm6]	A	G	4.660e^-6	0.598	SYNONYMOUS_CODING CG10257 DOWNSTREAM aPKC
2R	9211731	2R_9211731_SNP [dm3] 2R_13324226_SNP [dm6]	A	T	4.781e^-6	0.598	INTERGENIC
2R	9890603	2R_9890603_SNP [dm3] 2R_14003098_SNP [dm6]	T	A	5.471e^-6	0.641	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11982501	2L_11982501_SNP [dm3] 2L_11982501_SNP [dm6]	G	A	7.771e^-6	0.771	NON_SYNONYMOUS_CODING CG16965
X	6693235	X_6693235_SNP [dm3] X_6799202_SNP [dm6]	C	T	7.968e^-6	0.771	INTRON C3G
2R	9795157	2R_9795157_SNP [dm3] 2R_13907652_SNP [dm6]	C	T	8.132e^-6	0.771	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad
3L	6494113	3L_6494113_SNP [dm3] 3L_6501013_SNP [dm6]	G	A	8.477e^-6	0.771	INTRON sfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
2R	13802127	2R_13802127_SNP [dm3] 2R_17914622_SNP [dm6]	C	T	8.703e^-6	0.771	INTRON Elk
2R	9209742	2R_9209742_SNP [dm3] 2R_13322237_SNP [dm6]	T	A	9.045e^-6	0.771	INTERGENIC
2R	9890606	2R_9890606_SNP [dm3] 2R_14003101_SNP [dm6]	A	G	1.003e^-5	0.787	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20458518	3L_20458518_SNP [dm3] 3L_20465418_SNP [dm6]	G	A	1.008e^-5	0.787	SYNONYMOUS_CODING CG42764 UPSTREAM CG5195
2R	1247208	2R_1247208_SNP [dm3] 2R_5359703_SNP [dm6]	T	C	1.086e^-5	0.815	DOWNSTREAM CG10417 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	9211496	2R_9211496_SNP [dm3] 2R_13323991_SNP [dm6]	G	A	1.174e^-5	0.833	INTERGENIC
3L	3571701	3L_3571701_SNP [dm3] 3L_3571701_SNP [dm6]	T	G	1.235e^-5	0.833	INTRON Eip63E
3R	25569204	3R_25569204_SNP [dm3] 3R_29743482_SNP [dm6]	A	G	1.315e^-5	0.833	SYNONYMOUS_CODING CG7609
3R	25555999	3R_25555999_SNP [dm3] 3R_29730277_SNP [dm6]	C	A	1.355e^-5	0.833	SYNONYMOUS_CODING Kul	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	3571696	3L_3571696_SNP [dm3] 3L_3571696_SNP [dm6]	C	A	1.357e^-5	0.833	INTRON Eip63E
3R	25566947	3R_25566947_SNP [dm3] 3R_29741225_SNP [dm6]	G	A	1.446e^-5	0.833	SYNONYMOUS_CODING CG1969 DOWNSTREAM CG7609
X	20341570	X_20341570_SNP [dm3] X_20470543_SNP [dm6]	C	A	1.452e^-5	0.833	UTR_3_PRIME RhoGAP19D DOWNSTREAM GstT3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25556299	3R_25556299_SNP [dm3] 3R_29730577_SNP [dm6]	G	A	1.511e^-5	0.833	INTRON Kul	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9215582	2R_9215582_SNP [dm3] 2R_13328077_SNP [dm6]	A	C	1.547e^-5	0.833	INTERGENIC
3L	6837443	3L_6837443_SNP [dm3] 3L_6844343_SNP [dm6]	G	T	1.583e^-5	0.833	INTERGENIC
X	9271917	X_9271917_SNP [dm3] X_9377884_SNP [dm6]	C	G	1.599e^-5	0.833	INTRON mgl
3L	12156141	3L_12156141_SNP [dm3] 3L_12163041_SNP [dm6]	A	T	1.678e^-5	0.833	INTRON CG9760
2R	16961070	2R_16961070_SNP [dm3] 2R_21073565_SNP [dm6]	A	G	1.688e^-5	0.833	UPSTREAM CG10527 & 1 other INTERGENIC
3L	5076045	3L_5076045_SNP [dm3] 3L_5076045_SNP [dm6]	C	T	1.791e^-5	0.85	INTRON Con
X	18966091	X_18966091_SNP [dm3] X_19072058_SNP [dm6]	C	T	1.885e^-5	0.85	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	10219205	3R_10219205_INS [dm3] 3R_14393483_INS [dm6]	A	AGGGAAATTAG...	1.891e^-5	0.85	SPLICE_SITE_REGION cv-c INTRON cv-c
2R	11380163	2R_11380163_SNP [dm3] 2R_15492658_SNP [dm6]	T	C	2.023e^-5	0.85	INTRON CG12964
3R	25557563	3R_25557563_SNP [dm3] 3R_29731841_SNP [dm6]	C	A	2.038e^-5	0.85	SYNONYMOUS_CODING Kul UTR_3_PRIME Kul	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11376353	2R_11376353_SNP [dm3] 2R_15488848_SNP [dm6]	A	G	2.045e^-5	0.85	NON_SYNONYMOUS_CODING CG12964	TF binding site mE1_TFBS_chinmo
2R	9203443	2R_9203443_SNP [dm3] 2R_13315938_SNP [dm6]	A	C	2.182e^-5	0.85	INTERGENIC
2R	16960970	2R_16960970_SNP [dm3] 2R_21073465_SNP [dm6]	T	C	2.198e^-5	0.85	UPSTREAM CG10527 & 1 other INTERGENIC
3R	26050610	3R_26050610_SNP [dm3] 3R_30224888_SNP [dm6]	T	C	2.201e^-5	0.85	INTERGENIC
3L	15882131	3L_15882131_SNP [dm3] 3L_15889031_SNP [dm6]	G	A	2.275e^-5	0.85	INTRON pHCl
3R	25569208	3R_25569208_SNP [dm3] 3R_29743486_SNP [dm6]	C	T	2.311e^-5	0.85	SYNONYMOUS_CODING CG7609
2R	6865422	2R_6865422_DEL [dm3] 2R_10977917_DEL [dm6]	AA	A	2.311e^-5	0.85	DOWNSTREAM luna INTERGENIC
2R	17464624	2R_17464624_SNP [dm3] 2R_21577119_SNP [dm6]	G	A	2.320e^-5	0.85	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13007111	X_13007111_SNP [dm3] X_13113078_SNP [dm6]	T	C	2.356e^-5	0.85	UPSTREAM CG43313 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
2L	7754680	2L_7754680_SNP [dm3] 2L_7754680_SNP [dm6]	G	A	2.511e^-5	0.866	INTRON CG7196
2R	16921250	2R_16921250_SNP [dm3] 2R_21033745_SNP [dm6]	T	G	2.548e^-5	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13149224	3L_13149224_SNP [dm3] 3L_13156124_SNP [dm6]	G	C	2.647e^-5	0.866	INTERGENIC
2L	9550783	2L_9550783_SNP [dm3] 2L_9550783_SNP [dm6]	A	G	2.795e^-5	0.866	UTR_5_PRIME jp INTRON jp	TF binding site mE1_TFBS_cad
2L	4455150	2L_4455150_SNP [dm3] 2L_4455150_SNP [dm6]	G	A	2.831e^-5	0.866	UTR_3_PRIME Gs1l & 1 other UPSTREAM CG15440 DOWNSTREAM Gs1l	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4058938	2L_4058938_SNP [dm3] 2L_4058938_SNP [dm6]	T	G	2.883e^-5	0.866	INTRON ed	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	9203429	2R_9203429_SNP [dm3] 2R_13315924_SNP [dm6]	T	A	2.887e^-5	0.866	INTERGENIC
3L	13094196	3L_13094196_SNP [dm3] 3L_13101096_SNP [dm6]	T	A	2.902e^-5	0.866	DOWNSTREAM CR44554 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1085153	2L_1085153_SNP [dm3] 2L_1085153_SNP [dm6]	G	A	2.990e^-5	0.866	UTR_3_PRIME Atg4a INTRON CG4629	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11377499	2R_11377499_SNP [dm3] 2R_15489994_SNP [dm6]	C	A	3.000e^-5	0.866	INTRON CG12964
3L	4083000	3L_4083000_SNP [dm3] 3L_4083000_SNP [dm6]	C	T	3.010e^-5	0.866	INTRON Gad1
3L	8792498	3L_8792498_SNP [dm3] 3L_8799398_SNP [dm6]	C	G	3.076e^-5	0.866	SYNONYMOUS_CODING CG13310 DOWNSTREAM Fhos
2R	9890438	2R_9890438_SNP [dm3] 2R_14002933_SNP [dm6]	C	G	3.087e^-5	0.866	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9890522	2R_9890522_DEL [dm3] 2R_14003017_DEL [dm6]	TAAAAGCATTTCCTTTTAT...	T	3.087e^-5	0.866	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11963728	2R_11963728_SNP [dm3] 2R_16076223_SNP [dm6]	A	G	3.125e^-5	0.866	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4090390	3L_4090390_SNP [dm3] 3L_4090390_SNP [dm6]	A	T	3.140e^-5	0.866	NON_SYNONYMOUS_CODING CG14989	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9215849	2R_9215849_DEL [dm3] 2R_13328344_DEL [dm6]	AT	A	3.226e^-5	0.873	INTERGENIC
2R	9891838	2R_9891838_SNP [dm3] 2R_14004333_SNP [dm6]	G	C	3.271e^-5	0.873	INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	1920862	3L_1920862_SNP [dm3] 3L_1920862_SNP [dm6]	C	T	3.312e^-5	0.873	UPSTREAM Dbx INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18281098	X_18281098_SNP [dm3] X_18387065_SNP [dm6]	G	T	3.476e^-5	0.873	UPSTREAM Tsf1 INTERGENIC
X	6134306	X_6134306_SNP [dm3] X_6240273_SNP [dm6]	T	C	3.543e^-5	0.873	UTR_3_PRIME CG14445 DOWNSTREAM Rbcn-3A
2R	3591031	2R_3591031_SNP [dm3] 2R_7703526_SNP [dm6]	T	C	3.603e^-5	0.873	UTR_3_PRIME CG34216 DOWNSTREAM CG30493
2R	17756124	2R_17756124_SNP [dm3] 2R_21868619_SNP [dm6]	G	T	3.618e^-5	0.873	INTERGENIC
3R	25556597	3R_25556597_SNP [dm3] 3R_29730875_SNP [dm6]	G	C	3.683e^-5	0.873	INTRON Kul	TF binding site mE1_TFBS_cad
2L	10423139	2L_10423139_SNP [dm3] 2L_10423139_SNP [dm6]	T	A	3.793e^-5	0.873	UPSTREAM CG5168 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	26879883	3R_26879883_SNP [dm3] 3R_31054161_SNP [dm6]	G	A	3.827e^-5	0.873	UTR_3_PRIME dco UPSTREAM l_3_03670	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	9199782	2R_9199782_SNP [dm3] 2R_13312277_SNP [dm6]	A	C	3.833e^-5	0.873	INTERGENIC
3L	9667388	3L_9667388_SNP [dm3] 3L_9674288_SNP [dm6]	G	A	3.839e^-5	0.873	INTRON fry
2R	19705652	2R_19705652_SNP [dm3] 2R_23818129_SNP [dm6]	T	C	3.857e^-5	0.873	UTR_5_PRIME CG4797
2R	9204794	2R_9204794_SNP [dm3] 2R_13317289_SNP [dm6]	C	T	3.932e^-5	0.873	INTERGENIC
X	18281090	X_18281090_DEL [dm3] X_18387057_DEL [dm6]	AGGCACC	A	3.932e^-5	0.873	UPSTREAM Tsf1 INTERGENIC
3R	25556592	3R_25556592_SNP [dm3] 3R_29730870_SNP [dm6]	C	T	4.157e^-5	0.873	INTRON Kul	TF binding site mE1_TFBS_cad
3L	6837432	3L_6837432_SNP [dm3] 3L_6844332_SNP [dm6]	G	T	4.179e^-5	0.873	INTERGENIC
2L	16733776	2L_16733776_SNP [dm3] 2L_16733776_SNP [dm6]	C	A	4.219e^-5	0.873	UTR_3_PRIME glu DOWNSTREAM CG17904
2L	3303897	2L_3303897_SNP [dm3] 2L_3303897_SNP [dm6]	T	A	4.259e^-5	0.873	UPSTREAM CG3277 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	11375587	2R_11375587_SNP [dm3] 2R_15488082_SNP [dm6]	G	T	4.269e^-5	0.873	SYNONYMOUS_CODING CG12964	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6506836	3R_6506836_SNP [dm3] 3R_10681114_SNP [dm6]	C	G	4.282e^-5	0.873	UPSTREAM CG14688 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	11381465	2R_11381465_SNP [dm3] 2R_15493960_SNP [dm6]	A	G	4.289e^-5	0.873	INTRON CG12964
3L	6837454	3L_6837454_SNP [dm3] 3L_6844354_SNP [dm6]	G	T	4.427e^-5	0.873	INTERGENIC
2R	9209730	2R_9209730_SNP [dm3] 2R_13322225_SNP [dm6]	A	G	4.434e^-5	0.873	INTERGENIC
3R	25570319	3R_25570319_SNP [dm3] 3R_29744597_SNP [dm6]	A	G	4.487e^-5	0.873	SYNONYMOUS_CODING CG7609 UPSTREAM IntS11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9203452	2R_9203452_SNP [dm3] 2R_13315947_SNP [dm6]	C	A	4.508e^-5	0.873	INTERGENIC
3R	25556595	3R_25556595_SNP [dm3] 3R_29730873_SNP [dm6]	A	C	4.595e^-5	0.873	INTRON Kul	TF binding site mE1_TFBS_cad
3L	6837494	3L_6837494_SNP [dm3] 3L_6844394_SNP [dm6]	T	G	4.616e^-5	0.873	INTERGENIC
X	18496526	X_18496526_SNP [dm3] X_18602493_SNP [dm6]	G	A	4.679e^-5	0.873	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	11828964	3R_11828964_SNP [dm3] 3R_16003242_SNP [dm6]	C	T	4.747e^-5	0.873	SYNONYMOUS_CODING srp UTR_3_PRIME srp	TF binding site mE1_TFBS_cad
2R	9217036	2R_9217036_SNP [dm3] 2R_13329531_SNP [dm6]	T	G	4.773e^-5	0.873	UPSTREAM mir-184 EXON CR44206	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9203492	2R_9203492_SNP [dm3] 2R_13315987_SNP [dm6]	G	A	4.775e^-5	0.873	INTERGENIC
2L	3522723	2L_3522723_SNP [dm3] 2L_3522723_SNP [dm6]	G	T	4.802e^-5	0.873	SYNONYMOUS_CODING Sr-CIV DOWNSTREAM CG8851
3L	12156155	3L_12156155_SNP [dm3] 3L_12163055_SNP [dm6]	A	G	4.834e^-5	0.873	INTRON CG9760
2R	11137391	2R_11137391_SNP [dm3] 2R_15249886_SNP [dm6]	A	G	4.908e^-5	0.873	INTRON scb	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	13094237	3L_13094237_SNP [dm3] 3L_13101137_SNP [dm6]	T	A	4.909e^-5	0.873	DOWNSTREAM CR44554 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1375534	3L_1375534_SNP [dm3] 3L_1375534_SNP [dm6]	A	T	4.915e^-5	0.873	INTRON Ptp61F & 1 other
2R	19511438	2R_19511438_SNP [dm3] 2R_23623915_SNP [dm6]	G	A	5.050e^-5	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	11143511	2R_11143511_SNP [dm3] 2R_15256006_SNP [dm6]	T	G	5.073e^-5	0.873	SYNONYMOUS_CODING scb	TF binding site mE1_TFBS_cad
2R	7321583	2R_7321583_SNP [dm3] 2R_11434078_SNP [dm6]	C	T	5.090e^-5	0.873	UPSTREAM CR43771 INTERGENIC
3R	11827789	3R_11827789_SNP [dm3] 3R_16002067_SNP [dm6]	A	C	5.203e^-5	0.873	INTRON srp	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	3522713	2L_3522713_SNP [dm3] 2L_3522713_SNP [dm6]	G	A	5.233e^-5	0.873	SYNONYMOUS_CODING Sr-CIV DOWNSTREAM CG8851
2R	19706514	2R_19706514_SNP [dm3] 2R_23818991_SNP [dm6]	C	G	5.242e^-5	0.873	UPSTREAM CG4797 INTERGENIC	TF binding site mE1_TFBS_kn
3R	25556593	3R_25556593_SNP [dm3] 3R_29730871_SNP [dm6]	A	G	5.253e^-5	0.873	INTRON Kul	TF binding site mE1_TFBS_cad
2R	17799780	2R_17799780_SNP [dm3] 2R_21912275_SNP [dm6]	C	T	5.288e^-5	0.873	INTRON Fili
3R	24447902	3R_24447902_SNP [dm3] 3R_28622180_SNP [dm6]	C	A	5.305e^-5	0.873	INTRON CG10011
X	15059534	X_15059534_SNP [dm3] X_15165501_SNP [dm6]	G	T	5.427e^-5	0.88	INTERGENIC
3L	9667319	3L_9667319_SNP [dm3] 3L_9674219_SNP [dm6]	G	A	5.444e^-5	0.88	INTRON fry
X	11866430	X_11866430_SNP [dm3] X_11972397_SNP [dm6]	C	T	5.621e^-5	0.881	INTRON cac
3L	2997542	3L_2997542_SNP [dm3] 3L_2997542_SNP [dm6]	A	G	5.639e^-5	0.881	INTERGENIC
3L	6837490	3L_6837490_INS [dm3] 3L_6844390_INS [dm6]	A	AGT	5.664e^-5	0.881	INTERGENIC
3R	19253522	3R_19253522_SNP [dm3] 3R_23427800_SNP [dm6]	T	G	5.673e^-5	0.881	INTRON CG4374	TF binding site BDTNP1_TFBS_prd
X	21940924	X_21940924_SNP [dm3] X_22539088_SNP [dm6]	T	G	5.700e^-5	0.881	INTRON CG17600 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	1092390	2L_1092390_SNP [dm3] 2L_1092390_SNP [dm6]	A	C	5.728e^-5	0.881	INTRON CG4629
2R	9199650	2R_9199650_SNP [dm3] 2R_13312145_SNP [dm6]	A	G	5.887e^-5	0.891	INTERGENIC
2R	10809160	2R_10809160_SNP [dm3] 2R_14921655_SNP [dm6]	T	G	5.947e^-5	0.891	INTRON CG10249
3L	8797613	3L_8797613_SNP [dm3] 3L_8804513_SNP [dm6]	C	T	5.969e^-5	0.891	UPSTREAM CG34427 & 1 other DOWNSTREAM CG34426 INTERGENIC
2R	11136842	2R_11136842_SNP [dm3] 2R_15249337_SNP [dm6]	C	T	6.002e^-5	0.891	SYNONYMOUS_CODING scb	TF binding site mE1_TFBS_cad
2R	9209376	2R_9209376_DEL [dm3] 2R_13321871_DEL [dm6]	GTGG	G	6.031e^-5	0.891	INTERGENIC
3L	10353761	3L_10353761_SNP [dm3] 3L_10360661_SNP [dm6]	C	G	6.162e^-5	0.894	EXON CR44327	TF binding site mE1_TFBS_cad
2L	11982506	2L_11982506_SNP [dm3] 2L_11982506_SNP [dm6]	A	G	6.290e^-5	0.894	NON_SYNONYMOUS_CODING CG16965
3L	10352912	3L_10352912_SNP [dm3] 3L_10359812_SNP [dm6]	G	A	6.298e^-5	0.894	EXON CR44327
2R	9203502	2R_9203502_SNP [dm3] 2R_13315997_SNP [dm6]	T	C	6.358e^-5	0.894	INTERGENIC
2L	306611	2L_306611_SNP [dm3] 2L_306611_SNP [dm6]	G	A	6.493e^-5	0.894	INTRON Plc21C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	20329192	3R_20329192_SNP [dm3] 3R_24503470_SNP [dm6]	T	C	6.519e^-5	0.894	INTERGENIC
2R	10809156	2R_10809156_MNP [dm3] 2R_14921651_MNP [dm6]	CCT	GAC	6.526e^-5	0.894	INTRON CG10249
2R	10809162	2R_10809162_MNP [dm3] 2R_14921657_MNP [dm6]	TTTCC	GGAAA	6.526e^-5	0.894	INTRON CG10249
2R	10809167	2R_10809167_INS [dm3] 2R_14921662_INS [dm6]	T	TT	6.526e^-5	0.894	INTRON CG10249
3L	10353806	3L_10353806_SNP [dm3] 3L_10360706_SNP [dm6]	T	A	6.556e^-5	0.894	EXON CR44327	TF binding site mE1_TFBS_cad
3R	25570307	3R_25570307_SNP [dm3] 3R_29744585_SNP [dm6]	A	G	6.578e^-5	0.894	SYNONYMOUS_CODING CG7609 UPSTREAM IntS11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1365463	3L_1365463_SNP [dm3] 3L_1365463_SNP [dm6]	A	G	6.655e^-5	0.898	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl
2R	9211437	2R_9211437_SNP [dm3] 2R_13323932_SNP [dm6]	A	T	6.788e^-5	0.9	INTERGENIC
3L	8797616	3L_8797616_SNP [dm3] 3L_8804516_SNP [dm6]	A	G	6.806e^-5	0.9	UPSTREAM CG34427 & 1 other DOWNSTREAM CG34426 INTERGENIC
3L	3994982	3L_3994982_SNP [dm3] 3L_3994982_SNP [dm6]	C	G	6.817e^-5	0.9	DOWNSTREAM scrt INTERGENIC
3R	21365639	3R_21365639_SNP [dm3] 3R_25539917_SNP [dm6]	T	C	6.868e^-5	0.901	INTRON msi
2R	15947569	2R_15947569_SNP [dm3] 2R_20060064_SNP [dm6]	A	T	7.119e^-5	0.906	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5528279	3L_5528279_SNP [dm3] 3L_5535179_SNP [dm6]	C	T	7.131e^-5	0.906	SYNONYMOUS_CODING CG13285
2L	7755850	2L_7755850_DEL [dm3] 2L_7755850_DEL [dm6]	CGAGGGC	C	7.208e^-5	0.906	UPSTREAM CG14538 INTRON CG7196
2L	9192118	2L_9192118_SNP [dm3] 2L_9192118_SNP [dm6]	A	G	7.277e^-5	0.906	INTRON tai
3L	20494874	3L_20494874_SNP [dm3] 3L_20501774_SNP [dm6]	A	G	7.517e^-5	0.906	DOWNSTREAM CG18281 INTRON CG32425	transposable element FlyBase
3L	2709067	3L_2709067_SNP [dm3] 3L_2709067_SNP [dm6]	A	T	7.528e^-5	0.906	INTRON Fife
3R	25570322	3R_25570322_SNP [dm3] 3R_29744600_SNP [dm6]	A	G	7.588e^-5	0.906	SYNONYMOUS_CODING CG7609 UPSTREAM IntS11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13799447	2R_13799447_SNP [dm3] 2R_17911942_SNP [dm6]	A	T	7.593e^-5	0.906	INTRON Elk
2R	10829271	2R_10829271_SNP [dm3] 2R_14941766_SNP [dm6]	C	A	7.596e^-5	0.906	UPSTREAM CG10257 INTERGENIC
3L	5101708	3L_5101708_SNP [dm3] 3L_5101708_SNP [dm6]	A	C	7.665e^-5	0.906	INTERGENIC
2R	9209719	2R_9209719_SNP [dm3] 2R_13322214_SNP [dm6]	A	G	7.899e^-5	0.906	INTERGENIC
2R	9123221	2R_9123221_SNP [dm3] 2R_13235716_SNP [dm6]	T	C	7.913e^-5	0.906	UPSTREAM CG4676 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3415902	2L_3415902_SNP [dm3] 2L_3415902_SNP [dm6]	T	A	7.923e^-5	0.906	UPSTREAM CG31952 INTRON pgant2
3R	14469962	3R_14469962_SNP [dm3] 3R_18644240_SNP [dm6]	T	C	7.926e^-5	0.906	INTRON qin
3L	8792594	3L_8792594_SNP [dm3] 3L_8799494_SNP [dm6]	A	T	7.966e^-5	0.906	SYNONYMOUS_CODING CG13310 DOWNSTREAM Fhos
2R	9215785	2R_9215785_SNP [dm3] 2R_13328280_SNP [dm6]	T	G	7.998e^-5	0.906	INTERGENIC
2R	9123214	2R_9123214_SNP [dm3] 2R_13235709_SNP [dm6]	T	A	8.054e^-5	0.906	UPSTREAM CG4676 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9123216	2R_9123216_INS [dm3] 2R_13235711_INS [dm6]	A	AGATCA	8.054e^-5	0.906	UPSTREAM CG4676 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8787763	2L_8787763_SNP [dm3] 2L_8787763_SNP [dm6]	C	T	8.054e^-5	0.906	INTERGENIC
3R	9252062	3R_9252062_SNP [dm3] 3R_13426340_SNP [dm6]	T	A	8.072e^-5	0.906	UPSTREAM Act87E & 1 other INTRON Act87E	TF binding site BDTNP1_TFBS_twi
X	16359922	X_16359922_SNP [dm3] X_16465889_SNP [dm6]	A	C	8.086e^-5	0.906	INTRON para
3L	7002669	3L_7002669_SNP [dm3] 3L_7009569_SNP [dm6]	T	C	8.153e^-5	0.906	INTRON Mp
3L	15820759	3L_15820759_SNP [dm3] 3L_15827659_SNP [dm6]	G	C	8.189e^-5	0.906	INTRON dbo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	6154316	2R_6154316_SNP [dm3] 2R_10266811_SNP [dm6]	A	G	8.200e^-5	0.906	UTR_5_PRIME CG12910 UPSTREAM CG12910 INTRON CG12910	TF binding site BDTNP1_TFBS_da
2R	9204536	2R_9204536_SNP [dm3] 2R_13317031_SNP [dm6]	C	T	8.204e^-5	0.906	INTERGENIC
2R	9204810	2R_9204810_SNP [dm3] 2R_13317305_SNP [dm6]	C	T	8.204e^-5	0.906	INTERGENIC
2L	3499286	2L_3499286_SNP [dm3] 2L_3499286_SNP [dm6]	G	A	8.300e^-5	0.906	INTRON tim	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	14170768	2R_14170768_SNP [dm3] 2R_18283263_SNP [dm6]	A	T	8.341e^-5	0.906	INTRON sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	11827769	3R_11827769_SNP [dm3] 3R_16002047_SNP [dm6]	A	G	8.358e^-5	0.906	INTRON srp	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	6837493	3L_6837493_SNP [dm3] 3L_6844393_SNP [dm6]	T	A	8.489e^-5	0.906	INTERGENIC
X	3083019	X_3083019_SNP [dm3] X_3188986_SNP [dm6]	T	C	8.495e^-5	0.906	INTRON dnc	TF binding site BDTNP1_TFBS_z
3R	9250984	3R_9250984_SNP [dm3] 3R_13425262_SNP [dm6]	A	G	8.513e^-5	0.906	UPSTREAM Act87E DOWNSTREAM CR45591 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17750355	2L_17750355_SNP [dm3] 2L_17750355_SNP [dm6]	A	T	8.635e^-5	0.906	INTRON CadN	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	10323252	2L_10323252_SNP [dm3] 2L_10323252_SNP [dm6]	T	A	8.657e^-5	0.906	UPSTREAM CG4995 & 1 other INTRON CG4995
2R	20094191	2R_20094191_SNP [dm3] 2R_24206668_SNP [dm6]	C	T	8.749e^-5	0.906	SYNONYMOUS_CODING CG11406 UTR_5_PRIME CG11406	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	25556826	3R_25556826_SNP [dm3] 3R_29731104_SNP [dm6]	G	A	8.751e^-5	0.906	NON_SYNONYMOUS_CODING Kul UTR_3_PRIME Kul	TF binding site mE1_TFBS_cad
2L	8864838	2L_8864838_SNP [dm3] 2L_8864838_SNP [dm6]	T	G	8.756e^-5	0.906	UTR_3_PRIME CG32987 UPSTREAM CG32988 EXON CR45260
2L	4056881	2L_4056881_SNP [dm3] 2L_4056881_SNP [dm6]	G	T	8.760e^-5	0.906	INTRON ed	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	14156761	3L_14156761_SNP [dm3] 3L_14163661_SNP [dm6]	T	C	8.866e^-5	0.906	INTERGENIC	regulatory region REDfly_CRMs
3L	4413805	3L_4413805_SNP [dm3] 3L_4413805_SNP [dm6]	G	T	8.892e^-5	0.906	UPSTREAM DOR INTRON DOR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	9317825	3L_9317825_SNP [dm3] 3L_9324725_SNP [dm6]	T	C	8.912e^-5	0.906	INTERGENIC
X	3165115	X_3165115_DEL [dm3] X_3271082_DEL [dm6]	AGA	A	8.936e^-5	0.906	INTRON dnc
X	6693248	X_6693248_SNP [dm3] X_6799215_SNP [dm6]	C	A	9.087e^-5	0.914	INTRON C3G
2R	12351167	2R_12351167_SNP [dm3] 2R_16463662_SNP [dm6]	G	C	9.256e^-5	0.914	INTERGENIC
3L	12156153	3L_12156153_SNP [dm3] 3L_12163053_SNP [dm6]	C	T	9.272e^-5	0.914	INTRON CG9760
X	6693330	X_6693330_SNP [dm3] X_6799297_SNP [dm6]	A	T	9.304e^-5	0.914	INTRON C3G
2R	19179567	2R_19179567_DEL [dm3] 2R_23292044_DEL [dm6]	CC	C	9.310e^-5	0.914	UPSTREAM CR44783 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	20777720	X_20777720_SNP [dm3] X_20906693_SNP [dm6]	A	G	9.313e^-5	0.914	INTRON shakB	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	8895851	2R_8895851_SNP [dm3] 2R_13008346_SNP [dm6]	G	A	9.380e^-5	0.916	DOWNSTREAM Su_z_2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	20444808	3L_20444808_INS [dm3] 3L_20451708_INS [dm6]	A	AA	9.536e^-5	0.917	INTRON CG5199	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19705687	2R_19705687_SNP [dm3] 2R_23818164_SNP [dm6]	C	T	9.536e^-5	0.917	UTR_5_PRIME CG4797
2R	9203490	2R_9203490_SNP [dm3] 2R_13315985_SNP [dm6]	A	C	9.555e^-5	0.917	INTERGENIC
X	17335722	X_17335722_SNP [dm3] X_17441689_SNP [dm6]	T	G	9.586e^-5	0.917	INTRON CG12994
3R	13647767	3R_13647767_SNP [dm3] 3R_17822045_SNP [dm6]	T	A	9.774e^-5	0.92	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	2463412	X_2463412_SNP [dm3] X_2569379_SNP [dm6]	A	G	9.829e^-5	0.92	INTRON Pdfr
2R	8921196	2R_8921196_SNP [dm3] 2R_13033691_SNP [dm6]	A	C	9.851e^-5	0.92	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	8921197	2R_8921197_SNP [dm3] 2R_13033692_SNP [dm6]	C	T	9.851e^-5	0.92	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	19817566	2L_19817566_SNP [dm3] 2L_19817566_SNP [dm6]	A	G	9.871e^-5	0.92	INTRON sick	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	3439715	X_3439715_SNP [dm3] X_3545682_SNP [dm6]	A	G	9.914e^-5	0.92	DOWNSTREAM CR34335 INTRON CG32791
X	21899966	X_21899966_SNP [dm3] X_22498130_SNP [dm6]	G	A	1.002e^-4	0.923	SYNONYMOUS_CODING l_1_G0196	TF binding site mE1_TFBS_sens
2R	6152956	2R_6152956_SNP [dm3] 2R_10265451_SNP [dm6]	T	G	1.003e^-4	0.923	UPSTREAM CG12910 INTRON CG12910	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13115237	2R_13115237_SNP [dm3] 2R_17227732_SNP [dm6]	G	A	1.030e^-4	0.933	INTRON mbl
3L	2091178	3L_2091178_SNP [dm3] 3L_2091178_SNP [dm6]	A	G	1.034e^-4	0.933	INTRON sls	TF binding site mE1_TFBS_HSA
2L	13206747	2L_13206747_SNP [dm3] 2L_13206747_SNP [dm6]	A	T	1.039e^-4	0.933	INTRON Pect
2R	11889685	2R_11889685_SNP [dm3] 2R_16002180_SNP [dm6]	C	T	1.041e^-4	0.933	SYNONYMOUS_CODING CG8370 UPSTREAM ATPCL	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	19125034	3R_19125034_SNP [dm3] 3R_23299312_SNP [dm6]	A	T	1.043e^-4	0.933	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2R	9213759	2R_9213759_SNP [dm3] 2R_13326254_SNP [dm6]	G	T	1.053e^-4	0.933	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3878337	3L_3878337_SNP [dm3] 3L_3878337_SNP [dm6]	T	A	1.061e^-4	0.933	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	6154322	2R_6154322_SNP [dm3] 2R_10266817_SNP [dm6]	A	C	1.063e^-4	0.933	UTR_5_PRIME CG12910 UPSTREAM CG12910 INTRON CG12910	TF binding site BDTNP1_TFBS_da
3L	14997724	3L_14997724_SNP [dm3] 3L_15004624_SNP [dm6]	T	A	1.080e^-4	0.933	INTRON Reck
X	5161561	X_5161561_SNP [dm3] X_5267528_SNP [dm6]	T	A	1.092e^-4	0.933	INTERGENIC
2R	9204716	2R_9204716_SNP [dm3] 2R_13317211_SNP [dm6]	G	C	1.095e^-4	0.933	INTERGENIC
2R	2405086	2R_2405086_SNP [dm3] 2R_6517581_SNP [dm6]	C	G	1.097e^-4	0.933	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3598599	2L_3598599_SNP [dm3] 2L_3598599_SNP [dm6]	C	A	1.097e^-4	0.933	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	9203466	2R_9203466_SNP [dm3] 2R_13315961_SNP [dm6]	T	G	1.109e^-4	0.933	INTERGENIC
2L	4778958	2L_4778958_SNP [dm3] 2L_4778958_SNP [dm6]	C	A	1.115e^-4	0.933	INTRON CG15630
2R	9209712	2R_9209712_SNP [dm3] 2R_13322207_SNP [dm6]	C	T	1.127e^-4	0.933	INTERGENIC
3R	9250405	3R_9250405_SNP [dm3] 3R_13424683_SNP [dm6]	A	C	1.130e^-4	0.933	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	9203499	2R_9203499_SNP [dm3] 2R_13315994_SNP [dm6]	T	G	1.137e^-4	0.933	INTERGENIC
3R	20329216	3R_20329216_SNP [dm3] 3R_24503494_SNP [dm6]	C	A	1.139e^-4	0.933	INTERGENIC
X	9497121	X_9497121_SNP [dm3] X_9603088_SNP [dm6]	G	C	1.142e^-4	0.933	NON_SYNONYMOUS_CODING Gga	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	21365641	3R_21365641_SNP [dm3] 3R_25539919_SNP [dm6]	A	C	1.156e^-4	0.933	INTRON msi
3R	10816221	3R_10816221_SNP [dm3] 3R_14990499_SNP [dm6]	G	T	1.161e^-4	0.933	INTERGENIC
3R	14956730	3R_14956730_SNP [dm3] 3R_19131008_SNP [dm6]	T	C	1.163e^-4	0.933	INTRON CG6040	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15882121	3L_15882121_SNP [dm3] 3L_15889021_SNP [dm6]	T	C	1.165e^-4	0.933	INTRON pHCl
2R	9217899	2R_9217899_SNP [dm3] 2R_13330394_SNP [dm6]	G	C	1.167e^-4	0.933	UPSTREAM mir-184 EXON CR44206	TF binding site mE1_TFBS_cad
2L	4835168	2L_4835168_SNP [dm3] 2L_4835168_SNP [dm6]	G	A	1.170e^-4	0.933	UPSTREAM Ir25a DOWNSTREAM tank INTRON Ir25a
2R	11377335	2R_11377335_SNP [dm3] 2R_15489830_SNP [dm6]	C	T	1.171e^-4	0.933	SYNONYMOUS_CODING CG12964
X	12150852	X_12150852_SNP [dm3] X_12256819_SNP [dm6]	A	T	1.175e^-4	0.933	INTRON Ten-a
2R	9123343	2R_9123343_SNP [dm3] 2R_13235838_SNP [dm6]	A	C	1.175e^-4	0.933	UPSTREAM CG4676 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12156138	3L_12156138_SNP [dm3] 3L_12163038_SNP [dm6]	G	A	1.177e^-4	0.933	INTRON CG9760
2L	8980595	2L_8980595_SNP [dm3] 2L_8980595_SNP [dm6]	A	C	1.182e^-4	0.933	UPSTREAM CG18662 INTRON CG13101
X	20882015	X_20882015_SNP [dm3] X_21010988_SNP [dm6]	T	C	1.204e^-4	0.933	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14163847	3L_14163847_SNP [dm3] 3L_14170747_SNP [dm6]	C	T	1.205e^-4	0.933	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	9247742	3R_9247742_SNP [dm3] 3R_13422020_SNP [dm6]	T	A	1.206e^-4	0.933	INTRON Ir87a
3R	25562301	3R_25562301_SNP [dm3] 3R_29736579_SNP [dm6]	C	T	1.210e^-4	0.933	NON_SYNONYMOUS_CODING CG7601 UPSTREAM CG7598	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Ubx
2R	6152934	2R_6152934_SNP [dm3] 2R_10265429_SNP [dm6]	C	A	1.210e^-4	0.933	UPSTREAM CG12910 INTRON CG12910	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12149556	X_12149556_SNP [dm3] X_12255523_SNP [dm6]	G	A	1.213e^-4	0.933	INTRON Ten-a	TF binding site mE1_TFBS_sens
3R	9250384	3R_9250384_SNP [dm3] 3R_13424662_SNP [dm6]	C	T	1.222e^-4	0.933	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	13006988	X_13006988_SNP [dm3] X_13112955_SNP [dm6]	T	C	1.225e^-4	0.933	UPSTREAM CG43313 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8864808	2L_8864808_SNP [dm3] 2L_8864808_SNP [dm6]	G	A	1.232e^-4	0.933	UTR_3_PRIME CG32987 UPSTREAM CG32988 EXON CR45260
2R	4222964	2R_4222964_SNP [dm3] 2R_8335459_SNP [dm6]	A	T	1.234e^-4	0.933	INTRON pdm3
2R	8615472	2R_8615472_DEL [dm3] 2R_12727967_DEL [dm6]	AA	A	1.239e^-4	0.933	INTRON CG42663
2L	6590497	2L_6590497_SNP [dm3] 2L_6590497_SNP [dm6]	G	A	1.254e^-4	0.933	INTRON CG11319
2L	10323264	2L_10323264_SNP [dm3] 2L_10323264_SNP [dm6]	C	T	1.256e^-4	0.933	UPSTREAM CG4995 & 1 other INTRON CG4995
3L	4373505	3L_4373505_SNP [dm3] 3L_4373505_SNP [dm6]	G	A	1.257e^-4	0.933	INTRON DopEcR
3R	26105761	3R_26105761_SNP [dm3] 3R_30280039_SNP [dm6]	T	C	1.264e^-4	0.933	SYNONYMOUS_CODING hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14721884	2R_14721884_SNP [dm3] 2R_18834379_SNP [dm6]	T	C	1.269e^-4	0.933	NON_SYNONYMOUS_CODING CG15098 UPSTREAM CG15083
2R	9123237	2R_9123237_SNP [dm3] 2R_13235732_SNP [dm6]	C	T	1.271e^-4	0.933	UPSTREAM CG4676 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4060119	2L_4060119_SNP [dm3] 2L_4060119_SNP [dm6]	C	T	1.272e^-4	0.933	INTRON ed
2L	8788248	2L_8788248_SNP [dm3] 2L_8788248_SNP [dm6]	T	G	1.281e^-4	0.933	INTERGENIC
3L	13094288	3L_13094288_SNP [dm3] 3L_13101188_SNP [dm6]	A	T	1.283e^-4	0.933	DOWNSTREAM CR44554 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16804513	2L_16804513_SNP [dm3] 2L_16804513_SNP [dm6]	T	A	1.284e^-4	0.933	UPSTREAM CG13272 & 1 other INTRON CG13280
3R	17682387	3R_17682387_SNP [dm3] 3R_21856665_SNP [dm6]	G	T	1.286e^-4	0.933	UPSTREAM glec INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	7222139	X_7222139_INS [dm3] X_7328106_INS [dm6]	T	TC	1.296e^-4	0.933	UTR_3_PRIME Dok UPSTREAM CG18155 INTRON CR44357 & 1 other
2L	7754885	2L_7754885_SNP [dm3] 2L_7754885_SNP [dm6]	T	G	1.299e^-4	0.933	INTRON CG7196
X	3082477	X_3082477_SNP [dm3] X_3188444_SNP [dm6]	A	C	1.303e^-4	0.933	INTRON dnc	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2091196	3L_2091196_SNP [dm3] 3L_2091196_SNP [dm6]	A	T	1.307e^-4	0.933	INTRON sls	TF binding site mE1_TFBS_HSA
2L	4835149	2L_4835149_SNP [dm3] 2L_4835149_SNP [dm6]	A	G	1.309e^-4	0.933	UTR_5_PRIME Ir25a UPSTREAM Ir25a DOWNSTREAM tank INTRON Ir25a
2L	16814411	2L_16814411_SNP [dm3] 2L_16814411_SNP [dm6]	T	C	1.311e^-4	0.933	NON_SYNONYMOUS_CODING CG13272 INTRON CG13280	TF binding site mE1_TFBS_sens
2L	1476515	2L_1476515_SNP [dm3] 2L_1476515_SNP [dm6]	A	G	1.317e^-4	0.933	INTERGENIC	TF binding site mE1_TFBS_sens
3L	14997321	3L_14997321_SNP [dm3] 3L_15004221_SNP [dm6]	C	T	1.324e^-4	0.933	NON_SYNONYMOUS_CODING Reck	TF binding site mE1_TFBS_cad
2R	9248877	2R_9248877_SNP [dm3] 2R_13361372_SNP [dm6]	G	A	1.324e^-4	0.933	DOWNSTREAM CR45312 INTERGENIC
2R	8921190	2R_8921190_SNP [dm3] 2R_13033685_SNP [dm6]	C	A	1.347e^-4	0.945	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	20523027	3L_20523027_SNP [dm3] 3L_20529927_SNP [dm6]	A	C	1.350e^-4	0.945	INTRON Rcd2
2R	16701827	2R_16701827_SNP [dm3] 2R_20814322_SNP [dm6]	G	A	1.367e^-4	0.953	INTERGENIC
2R	9209388	2R_9209388_SNP [dm3] 2R_13321883_SNP [dm6]	G	T	1.382e^-4	0.957	INTERGENIC
3L	12254687	3L_12254687_DEL [dm3] 3L_12261587_DEL [dm6]	TT	T	1.384e^-4	0.957	INTRON app
3L	2026267	3L_2026267_SNP [dm3] 3L_2026267_SNP [dm6]	C	T	1.393e^-4	0.96	UPSTREAM CG34259 INTERGENIC
X	19800846	X_19800846_DEL [dm3] X_19906813_DEL [dm6]	TA	T	1.401e^-4	0.962	UTR_3_PRIME Hers DOWNSTREAM Hers	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25566651	3R_25566651_SNP [dm3] 3R_29740929_SNP [dm6]	T	C	1.409e^-4	0.962	SYNONYMOUS_CODING CG1969
2L	3303199	2L_3303199_DEL [dm3] 2L_3303199_DEL [dm6]	GG	G	1.411e^-4	0.962	UPSTREAM CG3277 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
X	21899957	X_21899957_SNP [dm3] X_22498121_SNP [dm6]	C	T	1.416e^-4	0.962	SYNONYMOUS_CODING l_1_G0196	TF binding site mE1_TFBS_sens
2R	10306531	2R_10306531_DEL [dm3] 2R_14419026_DEL [dm6]	TCTAATTT	T	1.426e^-4	0.963	INTERGENIC
3L	3468424	3L_3468424_SNP [dm3] 3L_3468424_SNP [dm6]	A	T	1.437e^-4	0.963	UTR_3_PRIME CG14971 DOWNSTREAM CycJ
3L	15886310	3L_15886310_SNP [dm3] 3L_15893210_SNP [dm6]	C	T	1.441e^-4	0.963	INTRON pHCl
3R	21383902	3R_21383902_SNP [dm3] 3R_25558180_SNP [dm6]	G	C	1.442e^-4	0.963	INTRON msi
2R	10988685	2R_10988685_SNP [dm3] 2R_15101180_SNP [dm6]	T	C	1.453e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	9216446	2R_9216446_SNP [dm3] 2R_13328941_SNP [dm6]	T	C	1.457e^-4	0.963	DOWNSTREAM CR44206 & 1 other INTERGENIC
3R	25556368	3R_25556368_SNP [dm3] 3R_29730646_SNP [dm6]	T	A	1.458e^-4	0.963	SYNONYMOUS_CODING Kul INTRON Kul	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4869918	3L_4869918_SNP [dm3] 3L_4869918_SNP [dm6]	C	T	1.460e^-4	0.963	INTRON CG17150	TF binding site mE1_TFBS_HSA
3L	5076040	3L_5076040_SNP [dm3] 3L_5076040_SNP [dm6]	C	G	1.467e^-4	0.963	INTRON Con
3R	22604398	3R_22604398_SNP [dm3] 3R_26778676_SNP [dm6]	C	A	1.469e^-4	0.963	INTERGENIC
3L	18570219	3L_18570219_SNP [dm3] 3L_18577119_SNP [dm6]	C	A	1.476e^-4	0.963	DOWNSTREAM AstC-R1 INTERGENIC
X	18499883	X_18499883_SNP [dm3] X_18605850_SNP [dm6]	A	G	1.480e^-4	0.963	DOWNSTREAM CG15040 INTERGENIC
3L	14198351	3L_14198351_SNP [dm3] 3L_14205251_SNP [dm6]	T	G	1.487e^-4	0.963	UPSTREAM nuf DOWNSTREAM CG32141 INTRON nuf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	20329195	3R_20329195_SNP [dm3] 3R_24503473_SNP [dm6]	T	G	1.489e^-4	0.963	INTERGENIC
3L	9667123	3L_9667123_SNP [dm3] 3L_9674023_SNP [dm6]	G	T	1.509e^-4	0.969	INTRON fry
3L	8216931	3L_8216931_SNP [dm3] 3L_8223831_SNP [dm6]	G	A	1.526e^-4	0.969	DOWNSTREAM CG13678 INTERGENIC
3L	6487834	3L_6487834_SNP [dm3] 3L_6494734_SNP [dm6]	T	A	1.530e^-4	0.969	SYNONYMOUS_CODING CG10144 UPSTREAM sfl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	17820779	3L_17820779_SNP [dm3] 3L_17827679_SNP [dm6]	A	G	1.536e^-4	0.969	INTRON Grd
X	20568244	X_20568244_SNP [dm3] X_20697217_SNP [dm6]	C	T	1.539e^-4	0.969	UTR_3_PRIME run DOWNSTREAM run	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	10831246	2R_10831246_SNP [dm3] 2R_14943741_SNP [dm6]	C	A	1.543e^-4	0.969	DOWNSTREAM aPKC INTRON CG10257
2R	18951640	2R_18951640_SNP [dm3] 2R_23064117_SNP [dm6]	T	C	1.555e^-4	0.969	SYNONYMOUS_CODING CG9890 UPSTREAM PPO3	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	20882725	X_20882725_SNP [dm3] X_21011698_SNP [dm6]	T	C	1.559e^-4	0.969	INTERGENIC
2L	18856359	2L_18856359_SNP [dm3] 2L_18856359_SNP [dm6]	G	A	1.568e^-4	0.969	SYNONYMOUS_CODING CG10602	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19913182	2L_19913182_SNP [dm3] 2L_19913182_SNP [dm6]	A	T	1.587e^-4	0.969	NON_SYNONYMOUS_CODING Victoria UPSTREAM TotF INTRON sick
3L	2091185	3L_2091185_SNP [dm3] 3L_2091185_SNP [dm6]	A	G	1.591e^-4	0.969	INTRON sls	TF binding site mE1_TFBS_HSA
3R	7121991	3R_7121991_SNP [dm3] 3R_11296269_SNP [dm6]	T	G	1.597e^-4	0.969	INTRON CR31386	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	16941966	X_16941966_SNP [dm3] X_17047933_SNP [dm6]	G	C	1.598e^-4	0.969	INTRON CG45002
3R	14919809	3R_14919809_SNP [dm3] 3R_19094087_SNP [dm6]	G	T	1.602e^-4	0.969	UTR_5_PRIME cdi UPSTREAM ATPsyn-d DOWNSTREAM mRpL55	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_Ubx
X	16359715	X_16359715_SNP [dm3] X_16465682_SNP [dm6]	T	G	1.618e^-4	0.969	INTRON para
X	11866308	X_11866308_SNP [dm3] X_11972275_SNP [dm6]	T	C	1.619e^-4	0.969	INTRON cac
3L	2997546	3L_2997546_SNP [dm3] 3L_2997546_SNP [dm6]	C	G	1.626e^-4	0.969	INTERGENIC
3R	20329317	3R_20329317_SNP [dm3] 3R_24503595_SNP [dm6]	A	T	1.628e^-4	0.969	INTERGENIC
2L	1480314	2L_1480314_SNP [dm3] 2L_1480314_SNP [dm6]	G	C	1.656e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3L	2091195	3L_2091195_SNP [dm3] 3L_2091195_SNP [dm6]	G	A	1.661e^-4	0.969	INTRON sls	TF binding site mE1_TFBS_HSA
2R	13563263	2R_13563263_SNP [dm3] 2R_17675758_SNP [dm6]	A	G	1.663e^-4	0.969	SYNONYMOUS_CODING Sema-1b	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26879786	3R_26879786_SNP [dm3] 3R_31054064_SNP [dm6]	A	C	1.673e^-4	0.969	UPSTREAM l_3_03670 DOWNSTREAM dco INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
X	19296955	X_19296955_SNP [dm3] X_19402922_SNP [dm6]	T	G	1.675e^-4	0.969	INTRON kek5
3L	8792567	3L_8792567_SNP [dm3] 3L_8799467_SNP [dm6]	G	T	1.676e^-4	0.969	SYNONYMOUS_CODING CG13310 DOWNSTREAM Fhos
2R	16962744	2R_16962744_SNP [dm3] 2R_21075239_SNP [dm6]	G	A	1.686e^-4	0.969	UPSTREAM Treh INTRON Treh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	9208478	2R_9208478_SNP [dm3] 2R_13320973_SNP [dm6]	G	A	1.688e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_inv
3R	1787857	3R_1787857_INS [dm3] 3R_5962135_INS [dm6]	G	GC	1.694e^-4	0.969	INTERGENIC
2L	1374571	2L_1374571_SNP [dm3] 2L_1374571_SNP [dm6]	A	T	1.703e^-4	0.969	INTERGENIC
3L	2091173	3L_2091173_SNP [dm3] 3L_2091173_SNP [dm6]	T	A	1.704e^-4	0.969	INTRON sls	TF binding site mE1_TFBS_HSA
2L	10406245	2L_10406245_SNP [dm3] 2L_10406245_SNP [dm6]	T	A	1.710e^-4	0.969	SYNONYMOUS_CODING Ir31a	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
2R	19706141	2R_19706141_SNP [dm3] 2R_23818618_SNP [dm6]	C	T	1.713e^-4	0.969	UPSTREAM CG4797 INTERGENIC	TF binding site mE1_TFBS_kn
X	20873326	X_20873326_SNP [dm3] X_21002299_SNP [dm6]	T	C	1.715e^-4	0.969	INTERGENIC
2R	11790130	2R_11790130_SNP [dm3] 2R_15902625_SNP [dm6]	T	A	1.721e^-4	0.969	INTRON sli	TF binding site BDTNP1_TFBS_twi
X	20858528	X_20858528_SNP [dm3] X_20987501_SNP [dm6]	G	C	1.723e^-4	0.969	INTERGENIC
2R	6860720	2R_6860720_SNP [dm3] 2R_10973215_SNP [dm6]	G	A	1.724e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_inv
2R	13799439	2R_13799439_SNP [dm3] 2R_17911934_SNP [dm6]	C	A	1.724e^-4	0.969	INTRON Elk
3R	13559422	3R_13559422_SNP [dm3] 3R_17733700_SNP [dm6]	C	T	1.729e^-4	0.969	SYNONYMOUS_CODING CG14321 DOWNSTREAM Lgr1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	4803610	X_4803610_SNP [dm3] X_4909577_SNP [dm6]	A	T	1.731e^-4	0.969	UTR_5_PRIME CG32772 DOWNSTREAM CG6927	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6813830	3L_6813830_SNP [dm3] 3L_6820730_SNP [dm6]	C	A	1.736e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25961449	3R_25961449_SNP [dm3] 3R_30135727_SNP [dm6]	T	C	1.739e^-4	0.969	NON_SYNONYMOUS_CODING AdoR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11655979	2R_11655979_SNP [dm3] 2R_15768474_SNP [dm6]	A	G	1.745e^-4	0.969	NON_SYNONYMOUS_CODING Zasp52 INTRON Zasp52	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	7604641	X_7604641_DEL [dm3] X_7710608_DEL [dm6]	AA	A	1.760e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	9225943	2R_9225943_SNP [dm3] 2R_13338438_SNP [dm6]	T	C	1.765e^-4	0.969	INTRON CR44206	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	13123900	2R_13123900_SNP [dm3] 2R_17236395_SNP [dm6]	G	A	1.765e^-4	0.969	INTRON mbl
3R	25556584	3R_25556584_SNP [dm3] 3R_29730862_SNP [dm6]	G	A	1.766e^-4	0.969	INTRON Kul	TF binding site mE1_TFBS_cad
3L	12156129	3L_12156129_SNP [dm3] 3L_12163029_SNP [dm6]	G	A	1.772e^-4	0.969	INTRON CG9760
2R	7321588	2R_7321588_SNP [dm3] 2R_11434083_SNP [dm6]	A	T	1.781e^-4	0.969	UPSTREAM CR43771 INTERGENIC
X	18496674	X_18496674_SNP [dm3] X_18602641_SNP [dm6]	C	T	1.791e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	9209395	2R_9209395_SNP [dm3] 2R_13321890_SNP [dm6]	T	C	1.798e^-4	0.969	INTERGENIC
X	16875513	X_16875513_SNP [dm3] X_16981480_SNP [dm6]	T	C	1.804e^-4	0.969	INTRON CG45002
3L	10354155	3L_10354155_SNP [dm3] 3L_10361055_SNP [dm6]	T	A	1.805e^-4	0.969	EXON CR44327	TF binding site mE1_TFBS_cad
3L	1475427	3L_1475427_SNP [dm3] 3L_1475427_SNP [dm6]	C	A	1.809e^-4	0.969	UPSTREAM Ptp61F DOWNSTREAM stet INTERGENIC
3R	20329316	3R_20329316_SNP [dm3] 3R_24503594_SNP [dm6]	T	A	1.813e^-4	0.969	INTERGENIC
2R	16701828	2R_16701828_SNP [dm3] 2R_20814323_SNP [dm6]	A	C	1.816e^-4	0.969	INTERGENIC
2L	9192055	2L_9192055_SNP [dm3] 2L_9192055_SNP [dm6]	A	T	1.824e^-4	0.969	INTRON tai
3L	16298742	3L_16298742_SNP [dm3] 3L_16305642_SNP [dm6]	G	C	1.828e^-4	0.969	SYNONYMOUS_CODING CG13043 UPSTREAM CG13063 DOWNSTREAM CG43249	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	2581241	X_2581241_SNP [dm3] X_2687208_SNP [dm6]	A	G	1.829e^-4	0.969	INTRON per	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13559415	3R_13559415_SNP [dm3] 3R_17733693_SNP [dm6]	T	C	1.829e^-4	0.969	NON_SYNONYMOUS_CODING CG14321 DOWNSTREAM Lgr1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	19913120	2L_19913120_DEL [dm3] 2L_19913120_DEL [dm6]	GGGCAGATACTCCGTCAACT...	G	1.830e^-4	0.969	FRAME_SHIFT Victoria UPSTREAM TotF INTRON sick
2L	19913150	2L_19913150_DEL [dm3] 2L_19913150_DEL [dm6]	GTTGTGCCTTATATTGCCTC...	G	1.830e^-4	0.969	CODON_DELETION Victoria UPSTREAM TotF INTRON sick
2L	19913179	2L_19913179_SNP [dm3] 2L_19913179_SNP [dm6]	T	G	1.830e^-4	0.969	NON_SYNONYMOUS_CODING Victoria UPSTREAM TotF INTRON sick
2L	19913183	2L_19913183_SNP [dm3] 2L_19913183_SNP [dm6]	T	A	1.830e^-4	0.969	NON_SYNONYMOUS_CODING Victoria UPSTREAM TotF INTRON sick
2L	19913189	2L_19913189_DEL [dm3] 2L_19913189_DEL [dm6]	TCCTTTCCTG	T	1.830e^-4	0.969	CODON_DELETION Victoria UPSTREAM TotF INTRON sick
2L	19913200	2L_19913200_SNP [dm3] 2L_19913200_SNP [dm6]	G	A	1.830e^-4	0.969	NON_SYNONYMOUS_CODING Victoria UPSTREAM TotF INTRON sick
2R	8863996	2R_8863996_SNP [dm3] 2R_12976491_SNP [dm6]	G	C	1.839e^-4	0.97	INTRON Psc	TF binding site mE1_TFBS_HSA
2R	15980410	2R_15980410_SNP [dm3] 2R_20092905_SNP [dm6]	C	G	1.841e^-4	0.97	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25811837	3R_25811837_SNP [dm3] 3R_29986115_SNP [dm6]	G	A	1.849e^-4	0.97	INTRON CG7896	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	17570852	2R_17570852_SNP [dm3] 2R_21683347_SNP [dm6]	A	G	1.854e^-4	0.97	INTRON CG30263	TF binding site mE1_TFBS_cad
3R	13304021	3R_13304021_SNP [dm3] 3R_17478299_SNP [dm6]	A	T	1.865e^-4	0.97	INTRON Dscam3
3R	9216895	3R_9216895_SNP [dm3] 3R_13391173_SNP [dm6]	T	C	1.874e^-4	0.97	INTRON CCHa2
2L	20253376	2L_20253376_INS [dm3] 2L_20253376_INS [dm6]	T	TCT	1.886e^-4	0.97	DOWNSTREAM CR40465 INTERGENIC
3L	1366862	3L_1366862_SNP [dm3] 3L_1366862_SNP [dm6]	A	T	1.886e^-4	0.97	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11513642	2R_11513642_SNP [dm3] 2R_15626137_SNP [dm6]	G	T	1.890e^-4	0.97	INTRON CG42524
3R	7151688	3R_7151688_SNP [dm3] 3R_11325966_SNP [dm6]	A	G	1.896e^-4	0.97	INTERGENIC
3L	14195711	3L_14195711_SNP [dm3] 3L_14202611_SNP [dm6]	C	G	1.907e^-4	0.97	UPSTREAM CG32141 INTRON nuf	TF binding site mE1_TFBS_cad
X	16559471	X_16559471_SNP [dm3] X_16665438_SNP [dm6]	T	C	1.908e^-4	0.97	UPSTREAM CG15865 INTRON r
3L	11117340	3L_11117340_SNP [dm3] 3L_11124240_SNP [dm6]	C	A	1.915e^-4	0.97	INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2R	11378755	2R_11378755_SNP [dm3] 2R_15491250_SNP [dm6]	G	C	1.915e^-4	0.97	INTRON CG12964
2R	9204969	2R_9204969_SNP [dm3] 2R_13317464_SNP [dm6]	C	G	1.916e^-4	0.97	INTERGENIC
3L	7952043	3L_7952043_SNP [dm3] 3L_7958943_SNP [dm6]	A	T	1.931e^-4	0.97	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5014148	2L_5014148_SNP [dm3] 2L_5014148_SNP [dm6]	G	A	1.932e^-4	0.97	SYNONYMOUS_CODING vkg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	1284830	3R_1284830_SNP [dm3] 3R_5459108_SNP [dm6]	T	C	1.940e^-4	0.97	UTR_3_PRIME PEK DOWNSTREAM CG14669
X	21965195	X_21965195_SNP [dm3] X_22563359_SNP [dm6]	C	T	1.943e^-4	0.97	INTERGENIC
2R	10831201	2R_10831201_SNP [dm3] 2R_14943696_SNP [dm6]	C	T	1.948e^-4	0.97	DOWNSTREAM aPKC INTRON CG10257
3L	1365441	3L_1365441_SNP [dm3] 3L_1365441_SNP [dm6]	T	G	1.948e^-4	0.97	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl
2R	11377125	2R_11377125_SNP [dm3] 2R_15489620_SNP [dm6]	C	A	1.949e^-4	0.97	SYNONYMOUS_CODING CG12964
2R	10831380	2R_10831380_SNP [dm3] 2R_14943875_SNP [dm6]	A	G	1.954e^-4	0.97	SYNONYMOUS_CODING CG10257 DOWNSTREAM aPKC
2R	2396496	2R_2396496_SNP [dm3] 2R_6508991_SNP [dm6]	G	C	1.958e^-4	0.97	INTRON jing EXON CR45127	TF binding site mE1_TFBS_cad
3R	20329185	3R_20329185_SNP [dm3] 3R_24503463_SNP [dm6]	T	A	1.964e^-4	0.97	INTERGENIC
2R	9205064	2R_9205064_SNP [dm3] 2R_13317559_SNP [dm6]	C	A	1.982e^-4	0.97	INTERGENIC
2L	4058814	2L_4058814_SNP [dm3] 2L_4058814_SNP [dm6]	G	T	1.985e^-4	0.97	INTRON ed	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	9567750	3R_9567750_SNP [dm3] 3R_13742028_SNP [dm6]	C	T	1.987e^-4	0.97	INTRON CG34383
X	11866564	X_11866564_SNP [dm3] X_11972531_SNP [dm6]	A	T	1.995e^-4	0.97	INTRON cac
3R	22058289	3R_22058289_SNP [dm3] 3R_26232567_SNP [dm6]	G	A	1.998e^-4	0.97	SYNONYMOUS_CODING CG12290	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6481308	X_6481308_SNP [dm3] X_6587275_SNP [dm6]	A	G	2.003e^-4	0.97	INTRON CG34417	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	10346476	3L_10346476_SNP [dm3] 3L_10353376_SNP [dm6]	T	A	2.017e^-4	0.97	INTRON CR44327
3L	3992943	3L_3992943_SNP [dm3] 3L_3992943_SNP [dm6]	A	C	2.030e^-4	0.97	UTR_3_PRIME scrt
3R	19198044	3R_19198044_SNP [dm3] 3R_23372322_SNP [dm6]	A	G	2.035e^-4	0.97	UPSTREAM CG42827 EXON CR44322
2R	11381439	2R_11381439_SNP [dm3] 2R_15493934_SNP [dm6]	G	C	2.038e^-4	0.97	INTRON CG12964
2R	19706079	2R_19706079_SNP [dm3] 2R_23818556_SNP [dm6]	T	G	2.040e^-4	0.97	UPSTREAM CG4797 INTERGENIC	TF binding site mE1_TFBS_kn
3R	9673200	3R_9673200_SNP [dm3] 3R_13847478_SNP [dm6]	A	T	2.045e^-4	0.97	INTERGENIC	TF binding site mE1_TFBS_cad
3L	4929191	3L_4929191_SNP [dm3] 3L_4929191_SNP [dm6]	C	T	2.049e^-4	0.97	DOWNSTREAM CR43627 INTERGENIC
3R	9752229	3R_9752229_DEL [dm3] 3R_13926507_DEL [dm6]	ATTATA	A	2.050e^-4	0.97	INTERGENIC
2R	11790099	2R_11790099_SNP [dm3] 2R_15902594_SNP [dm6]	A	G	2.070e^-4	0.97	INTRON sli	TF binding site BDTNP1_TFBS_twi
3L	13094286	3L_13094286_SNP [dm3] 3L_13101186_SNP [dm6]	G	C	2.072e^-4	0.97	DOWNSTREAM CR44554 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12581852	2R_12581852_SNP [dm3] 2R_16694347_SNP [dm6]	T	C	2.076e^-4	0.97	DOWNSTREAM CG5210 INTRON CG30463
3R	25562323	3R_25562323_SNP [dm3] 3R_29736601_SNP [dm6]	A	C	2.077e^-4	0.97	SYNONYMOUS_CODING CG7601 UPSTREAM CG7598	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Ubx
X	16875326	X_16875326_DEL [dm3] X_16981293_DEL [dm6]	TAT	T	2.078e^-4	0.97	INTRON CG45002
3R	7151160	3R_7151160_SNP [dm3] 3R_11325438_SNP [dm6]	C	T	2.081e^-4	0.97	INTERGENIC
2R	19138931	2R_19138931_SNP [dm3] 2R_23251408_SNP [dm6]	C	A	2.083e^-4	0.97	INTERGENIC
3R	9253618	3R_9253618_SNP [dm3] 3R_13427896_SNP [dm6]	T	C	2.084e^-4	0.97	UTR_3_PRIME Act87E DOWNSTREAM yrt
3R	18392526	3R_18392526_SNP [dm3] 3R_22566804_SNP [dm6]	A	T	2.088e^-4	0.97	INTERGENIC
2R	9890585	2R_9890585_INS [dm3] 2R_14003080_INS [dm6]	G	ACTATAATCCA...	2.093e^-4	0.97	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6476394	X_6476394_SNP [dm3] X_6582361_SNP [dm6]	G	C	2.110e^-4	0.97	SYNONYMOUS_CODING CG34417 INTRON CG34417
2R	16963368	2R_16963368_SNP [dm3] 2R_21075863_SNP [dm6]	C	A	2.114e^-4	0.97	UPSTREAM Treh INTRON Treh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18437424	2R_18437424_SNP [dm3] 2R_22549919_SNP [dm6]	T	C	2.118e^-4	0.97	UPSTREAM CG6018 INTRON px
X	9054963	X_9054963_SNP [dm3] X_9160930_SNP [dm6]	C	T	2.121e^-4	0.97	NON_SYNONYMOUS_CODING Zpr1 UPSTREAM CG9034	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	3284868	2L_3284868_SNP [dm3] 2L_3284868_SNP [dm6]	G	T	2.141e^-4	0.97	INTERGENIC
2L	1374577	2L_1374577_SNP [dm3] 2L_1374577_SNP [dm6]	C	G	2.144e^-4	0.97	INTERGENIC
2R	9215699	2R_9215699_SNP [dm3] 2R_13328194_SNP [dm6]	C	A	2.145e^-4	0.97	INTERGENIC
2L	7091426	2L_7091426_INS [dm3] 2L_7091426_INS [dm6]	A	ACATA	2.149e^-4	0.97	INTERGENIC
3R	25842435	3R_25842435_SNP [dm3] 3R_30016713_SNP [dm6]	T	A	2.160e^-4	0.97	SYNONYMOUS_CODING Mgat2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9561210	2L_9561210_SNP [dm3] 2L_9561210_SNP [dm6]	T	C	2.164e^-4	0.97	UPSTREAM jp INTRON jp
X	16412304	X_16412304_SNP [dm3] X_16518271_SNP [dm6]	G	T	2.164e^-4	0.97	INTRON para
3L	2950091	3L_2950091_SNP [dm3] 3L_2950091_SNP [dm6]	C	T	2.175e^-4	0.97	DOWNSTREAM CG32846 INTRON Shab
X	20777725	X_20777725_DEL [dm3] X_20906698_DEL [dm6]	AG	C	2.182e^-4	0.97	INTRON shakB	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	20329202	3R_20329202_DEL [dm3] 3R_24503480_DEL [dm6]	AGCGATAAACTA...	A	2.197e^-4	0.97	INTERGENIC
2R	10487530	2R_10487530_SNP [dm3] 2R_14600025_SNP [dm6]	T	A	2.209e^-4	0.97	SYNONYMOUS_CODING RpI1
3L	11784163	3L_11784163_SNP [dm3] 3L_11791063_SNP [dm6]	T	C	2.209e^-4	0.97	NON_SYNONYMOUS_CODING CG5964	TF binding site mE1_TFBS_chinmo
3R	27077193	3R_27077193_SNP [dm3] 3R_31251471_SNP [dm6]	T	C	2.218e^-4	0.97	INTRON qless	TF binding site mE1_TFBS_bab1
3L	1313027	3L_1313027_SNP [dm3] 3L_1313027_SNP [dm6]	T	C	2.237e^-4	0.97	UTR_5_PRIME CG9186 UPSTREAM CG9153	TF binding site mE1_TFBS_cad mE1_TFBS_Ubx
3R	26479581	3R_26479581_INS [dm3] 3R_30653859_INS [dm6]	A	ATC	2.240e^-4	0.97	INTERGENIC
2L	16804516	2L_16804516_SNP [dm3] 2L_16804516_SNP [dm6]	A	T	2.244e^-4	0.97	UPSTREAM CG13272 & 1 other INTRON CG13280
2R	6383935	2R_6383935_SNP [dm3] 2R_10496430_SNP [dm6]	T	C	2.248e^-4	0.97	UTR_3_PRIME lola INTRON lola
2L	3572110	2L_3572110_SNP [dm3] 2L_3572110_SNP [dm6]	T	C	2.248e^-4	0.97	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	9159603	2L_9159603_SNP [dm3] 2L_9159603_SNP [dm6]	T	G	2.256e^-4	0.97	INTRON CG32982
3R	25153742	3R_25153742_DEL [dm3] 3R_29328020_DEL [dm6]	TT	T	2.257e^-4	0.97	INTERGENIC
X	15059531	X_15059531_DEL [dm3] X_15165498_DEL [dm6]	CT	C	2.261e^-4	0.97	INTERGENIC
2R	9224488	2R_9224488_SNP [dm3] 2R_13336983_SNP [dm6]	A	T	2.270e^-4	0.97	EXON CR44206	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
X	18280359	X_18280359_SNP [dm3] X_18386326_SNP [dm6]	A	G	2.308e^-4	0.97	UPSTREAM Tsf1 INTERGENIC
2L	3598601	2L_3598601_SNP [dm3] 2L_3598601_SNP [dm6]	C	A	2.314e^-4	0.97	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	18985842	2R_18985842_SNP [dm3] 2R_23098319_SNP [dm6]	T	C	2.316e^-4	0.97	INTERGENIC
3R	25574616	3R_25574616_SNP [dm3] 3R_29748894_SNP [dm6]	A	G	2.318e^-4	0.97	UTR_5_PRIME ATPsyn-gamma UPSTREAM yata & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	6871486	X_6871486_SNP [dm3] X_6977453_SNP [dm6]	G	A	2.319e^-4	0.97	UTR_5_PRIME ogre
2R	7954424	2R_7954424_SNP [dm3] 2R_12066919_SNP [dm6]	A	G	2.343e^-4	0.97	INTRON CG8888	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	7758180	2L_7758180_SNP [dm3] 2L_7758180_SNP [dm6]	A	G	2.371e^-4	0.97	INTRON CG7196	TF binding site mE1_TFBS_HSA
2L	12182857	2L_12182857_SNP [dm3] 2L_12182857_SNP [dm6]	G	A	2.375e^-4	0.97	INTRON aret
3L	1312969	3L_1312969_SNP [dm3] 3L_1312969_SNP [dm6]	T	G	2.383e^-4	0.97	UTR_5_PRIME CG9186 UPSTREAM CG9153	TF binding site mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Ubx
2R	17666066	2R_17666066_SNP [dm3] 2R_21778561_SNP [dm6]	T	A	2.384e^-4	0.97	INTERGENIC
2R	9218452	2R_9218452_SNP [dm3] 2R_13330947_SNP [dm6]	G	A	2.386e^-4	0.97	EXON CR44206	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6865317	2R_6865317_SNP [dm3] 2R_10977812_SNP [dm6]	G	A	2.400e^-4	0.97	DOWNSTREAM luna INTERGENIC
2R	16274009	2R_16274009_SNP [dm3] 2R_20386504_SNP [dm6]	C	G	2.410e^-4	0.97	INTERGENIC
2R	11377252	2R_11377252_SNP [dm3] 2R_15489747_SNP [dm6]	G	A	2.412e^-4	0.97	NON_SYNONYMOUS_CODING CG12964
X	3082282	X_3082282_SNP [dm3] X_3188249_SNP [dm6]	C	G	2.414e^-4	0.97	INTRON dnc
3L	6837491	3L_6837491_SNP [dm3] 3L_6844391_SNP [dm6]	A	G	2.416e^-4	0.97	INTERGENIC
2L	4717238	2L_4717238_INS [dm3] 2L_4717238_INS [dm6]	A	AC	2.436e^-4	0.97	INTRON CG34351	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	9251404	3R_9251404_SNP [dm3] 3R_13425682_SNP [dm6]	T	A	2.436e^-4	0.97	UPSTREAM Act87E DOWNSTREAM CR45591 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13094388	3L_13094388_SNP [dm3] 3L_13101288_SNP [dm6]	C	T	2.438e^-4	0.97	DOWNSTREAM CR44554 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15059124	3R_15059124_SNP [dm3] 3R_19233402_SNP [dm6]	G	A	2.442e^-4	0.97	SYNONYMOUS_CODING unc79
3R	9251374	3R_9251374_SNP [dm3] 3R_13425652_SNP [dm6]	T	C	2.442e^-4	0.97	UPSTREAM Act87E DOWNSTREAM CR45591 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27077688	3R_27077688_SNP [dm3] 3R_31251966_SNP [dm6]	G	T	2.442e^-4	0.97	UTR_5_PRIME qless UPSTREAM mRpL32	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
X	13683486	X_13683486_SNP [dm3] X_13789453_SNP [dm6]	T	C	2.442e^-4	0.97	DOWNSTREAM CG10993 INTRON inaE
2L	4835207	2L_4835207_DEL [dm3] 2L_4835207_DEL [dm6]	AAACG	CCTT	2.449e^-4	0.97	UPSTREAM Ir25a DOWNSTREAM tank INTRON Ir25a
3R	24581128	3R_24581128_SNP [dm3] 3R_28755406_SNP [dm6]	T	C	2.457e^-4	0.97	DOWNSTREAM CG9997 INTERGENIC
2R	6746174	2R_6746174_SNP [dm3] 2R_10858669_SNP [dm6]	G	C	2.465e^-4	0.97	INTRON CG30015	insulator Insulator_Class_I.mE01
X	21959388	X_21959388_SNP [dm3] X_22557552_SNP [dm6]	A	C	2.480e^-4	0.97	INTERGENIC	transposable element FlyBase
3R	1268770	3R_1268770_SNP [dm3] 3R_5443048_SNP [dm6]	A	G	2.484e^-4	0.97	DOWNSTREAM CG14669 INTRON CG14669
3R	25648287	3R_25648287_SNP [dm3] 3R_29822565_SNP [dm6]	A	G	2.488e^-4	0.97	NON_SYNONYMOUS_CODING neo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	7604378	X_7604378_SNP [dm3] X_7710345_SNP [dm6]	C	A	2.495e^-4	0.97	UPSTREAM CHES-1-like INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	27077210	3R_27077210_SNP [dm3] 3R_31251488_SNP [dm6]	A	T	2.497e^-4	0.97	INTRON qless	TF binding site mE1_TFBS_bab1
2L	7754809	2L_7754809_SNP [dm3] 2L_7754809_SNP [dm6]	T	G	2.501e^-4	0.97	INTRON CG7196
X	17565317	X_17565317_SNP [dm3] X_17671284_SNP [dm6]	A	G	2.511e^-4	0.97	SYNONYMOUS_CODING CG12990
2R	9870883	2R_9870883_SNP [dm3] 2R_13983378_SNP [dm6]	C	T	2.513e^-4	0.97	UPSTREAM CG8067 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2L	3377666	2L_3377666_SNP [dm3] 2L_3377666_SNP [dm6]	G	A	2.514e^-4	0.97	SYNONYMOUS_CODING Ptpa UPSTREAM CG9662	TF binding site mE1_TFBS_sens
2R	16958858	2R_16958858_SNP [dm3] 2R_21071353_SNP [dm6]	C	T	2.515e^-4	0.97	INTRON CG10527 EXON CR44704	TF binding site mE1_TFBS_cad
2L	17782672	2L_17782672_SNP [dm3] 2L_17782672_SNP [dm6]	T	A	2.516e^-4	0.97	INTERGENIC
2R	11377333	2R_11377333_SNP [dm3] 2R_15489828_SNP [dm6]	A	G	2.522e^-4	0.97	NON_SYNONYMOUS_CODING CG12964
2R	9209845	2R_9209845_SNP [dm3] 2R_13322340_SNP [dm6]	C	A	2.528e^-4	0.97	INTERGENIC
X	9222929	X_9222929_SNP [dm3] X_9328896_SNP [dm6]	G	C	2.532e^-4	0.97	DOWNSTREAM CG34450 INTRON CG34449
X	5440005	X_5440005_SNP [dm3] X_5545972_SNP [dm6]	G	A	2.533e^-4	0.97	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	16232541	3L_16232541_SNP [dm3] 3L_16239441_SNP [dm6]	A	T	2.544e^-4	0.97	UTR_3_PRIME l_3_72Dr	TF binding site mE1_TFBS_cad
3R	26479566	3R_26479566_SNP [dm3] 3R_30653844_SNP [dm6]	A	T	2.549e^-4	0.97	INTERGENIC
2R	6873502	2R_6873502_INS [dm3] 2R_10985997_INS [dm6]	A	ATT	2.555e^-4	0.97	INTRON luna
2L	4717245	2L_4717245_SNP [dm3] 2L_4717245_SNP [dm6]	G	A	2.559e^-4	0.97	INTRON CG34351	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	5405804	2L_5405804_SNP [dm3] 2L_5405804_SNP [dm6]	A	T	2.566e^-4	0.97	INTRON H15	TF binding site BDTNP1_TFBS_twi
2R	8293593	2R_8293593_SNP [dm3] 2R_12406088_SNP [dm6]	T	C	2.567e^-4	0.97	SYNONYMOUS_CODING Cpr49Af DOWNSTREAM Cpr49Ae
2R	17755996	2R_17755996_DEL [dm3] 2R_21868491_DEL [dm6]	TT	C	2.569e^-4	0.97	INTERGENIC
3L	1475415	3L_1475415_SNP [dm3] 3L_1475415_SNP [dm6]	A	C	2.573e^-4	0.97	UPSTREAM Ptp61F DOWNSTREAM stet INTERGENIC
2R	19706100	2R_19706100_SNP [dm3] 2R_23818577_SNP [dm6]	A	G	2.575e^-4	0.97	UPSTREAM CG4797 INTERGENIC	TF binding site mE1_TFBS_kn
3L	12519601	3L_12519601_SNP [dm3] 3L_12526501_SNP [dm6]	A	G	2.576e^-4	0.97	DOWNSTREAM nst INTRON eIF-2beta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	11149557	2R_11149557_SNP [dm3] 2R_15262052_SNP [dm6]	C	T	2.578e^-4	0.97	NON_SYNONYMOUS_CODING ItgalphaPS4 DOWNSTREAM Trpm	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8777036	2R_8777036_SNP [dm3] 2R_12889531_SNP [dm6]	G	C	2.578e^-4	0.97	INTRON vg	regulatory region FlyBase TF binding site mE1_TFBS_sens
3L	5528504	3L_5528504_SNP [dm3] 3L_5535404_SNP [dm6]	C	T	2.594e^-4	0.97	INTRON CG13285
3R	19198005	3R_19198005_SNP [dm3] 3R_23372283_SNP [dm6]	A	C	2.595e^-4	0.97	UPSTREAM CG42827 EXON CR44322
3R	3744070	3R_3744070_SNP [dm3] 3R_7918348_SNP [dm6]	G	A	2.598e^-4	0.97	SYNONYMOUS_CODING CG10445
3R	1516311	3R_1516311_SNP [dm3] 3R_5690589_SNP [dm6]	T	G	2.619e^-4	0.97	DOWNSTREAM CG2104 INTRON plx
3R	25842443	3R_25842443_SNP [dm3] 3R_30016721_SNP [dm6]	G	A	2.622e^-4	0.97	SYNONYMOUS_CODING Mgat2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3303217	2L_3303217_SNP [dm3] 2L_3303217_SNP [dm6]	G	A	2.623e^-4	0.97	UPSTREAM CG3277 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
X	21897868	X_21897868_SNP [dm3] X_22496032_SNP [dm6]	T	C	2.625e^-4	0.97	INTRON l_1_G0196
2R	15713448	2R_15713448_SNP [dm3] 2R_19825943_SNP [dm6]	T	A	2.626e^-4	0.97	UPSTREAM Toll-7 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	7023426	2L_7023426_SNP [dm3] 2L_7023426_SNP [dm6]	T	A	2.635e^-4	0.97	DOWNSTREAM Pcp INTRON ade3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14160905	3L_14160905_SNP [dm3] 3L_14167805_SNP [dm6]	T	G	2.651e^-4	0.97	INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs
X	8703598	X_8703598_SNP [dm3] X_8809565_SNP [dm6]	C	T	2.652e^-4	0.97	INTERGENIC
2L	938585	2L_938585_SNP [dm3] 2L_938585_SNP [dm6]	A	G	2.652e^-4	0.97	INTRON CG4341
3R	27077167	3R_27077167_SNP [dm3] 3R_31251445_SNP [dm6]	A	G	2.652e^-4	0.97	INTRON qless	TF binding site mE1_TFBS_bab1
2R	18898490	2R_18898490_SNP [dm3] 2R_23010967_SNP [dm6]	C	T	2.653e^-4	0.97	DOWNSTREAM CG42741 INTRON twi
X	8703566	X_8703566_SNP [dm3] X_8809533_SNP [dm6]	C	T	2.655e^-4	0.97	INTERGENIC
X	21899867	X_21899867_SNP [dm3] X_22498031_SNP [dm6]	T	A	2.659e^-4	0.97	SYNONYMOUS_CODING l_1_G0196	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9016027	2R_9016027_SNP [dm3] 2R_13128522_SNP [dm6]	A	G	2.661e^-4	0.97	DOWNSTREAM CG13326 INTRON CG3955	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	11147588	2R_11147588_SNP [dm3] 2R_15260083_SNP [dm6]	C	A	2.673e^-4	0.97	NON_SYNONYMOUS_CODING ItgalphaPS4	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11147764	2R_11147764_SNP [dm3] 2R_15260259_SNP [dm6]	G	T	2.673e^-4	0.97	INTRON ItgalphaPS4
2R	9257991	2R_9257991_SNP [dm3] 2R_13370486_SNP [dm6]	G	A	2.679e^-4	0.97	INTERGENIC
2R	2415983	2R_2415983_SNP [dm3] 2R_6528478_SNP [dm6]	T	G	2.680e^-4	0.97	INTRON jing	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	9225579	2R_9225579_SNP [dm3] 2R_13338074_SNP [dm6]	T	A	2.689e^-4	0.97	INTRON CR44206	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	12362124	2R_12362124_SNP [dm3] 2R_16474619_SNP [dm6]	G	T	2.702e^-4	0.97	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	18626920	2L_18626920_SNP [dm3] 2L_18626920_SNP [dm6]	G	T	2.710e^-4	0.97	INTRON MESR3	TF binding site mE1_TFBS_Trl
X	21365597	X_21365597_SNP [dm3] X_21494570_SNP [dm6]	A	C	2.713e^-4	0.97	INTERGENIC
3R	9247753	3R_9247753_SNP [dm3] 3R_13422031_SNP [dm6]	T	C	2.714e^-4	0.97	SPLICE_SITE_REGION Ir87a INTRON Ir87a
X	6285366	X_6285366_SNP [dm3] X_6391333_SNP [dm6]	G	A	2.715e^-4	0.97	INTERGENIC
3R	26050665	3R_26050665_SNP [dm3] 3R_30224943_SNP [dm6]	A	C	2.728e^-4	0.97	INTERGENIC
2R	17755221	2R_17755221_SNP [dm3] 2R_21867716_SNP [dm6]	T	C	2.729e^-4	0.97	UPSTREAM comr INTERGENIC
X	19481625	X_19481625_SNP [dm3] X_19587592_SNP [dm6]	G	A	2.742e^-4	0.97	SYNONYMOUS_CODING CG14219 DOWNSTREAM CG14204
2L	1368238	2L_1368238_SNP [dm3] 2L_1368238_SNP [dm6]	A	T	2.745e^-4	0.97	UTR_5_PRIME CG14346	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	4026232	2R_4026232_SNP [dm3] 2R_8138727_SNP [dm6]	T	G	2.747e^-4	0.97	INTRON Lpin
2R	11376343	2R_11376343_SNP [dm3] 2R_15488838_SNP [dm6]	C	T	2.752e^-4	0.97	SYNONYMOUS_CODING CG12964	TF binding site mE1_TFBS_chinmo
2R	9588169	2R_9588169_SNP [dm3] 2R_13700664_SNP [dm6]	G	T	2.756e^-4	0.97	INTRON fas
3L	1307112	3L_1307112_SNP [dm3] 3L_1307112_SNP [dm6]	T	C	2.759e^-4	0.97	SYNONYMOUS_CODING CG2277 UTR_5_PRIME CG2277 UPSTREAM CG2469	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10220390	2R_10220390_SNP [dm3] 2R_14332885_SNP [dm6]	G	A	2.766e^-4	0.97	UTR_5_PRIME Shroom INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	11388347	3L_11388347_SNP [dm3] 3L_11395247_SNP [dm6]	G	C	2.769e^-4	0.97	NON_SYNONYMOUS_CODING CG11726
3R	17970433	3R_17970433_SNP [dm3] 3R_22144711_SNP [dm6]	T	C	2.775e^-4	0.97	INTRON SKIP	TF binding site mE1_TFBS_cad
2R	8895935	2R_8895935_SNP [dm3] 2R_13008430_SNP [dm6]	C	A	2.776e^-4	0.97	DOWNSTREAM Su_z_2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16195006	2R_16195006_SNP [dm3] 2R_20307501_SNP [dm6]	G	T	2.778e^-4	0.97	INTRON CG11200	TF binding site mE1_TFBS_inv
2R	16964603	2R_16964603_SNP [dm3] 2R_21077098_SNP [dm6]	T	A	2.782e^-4	0.97	SYNONYMOUS_CODING Treh	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	2538015	3L_2538015_SNP [dm3] 3L_2538015_SNP [dm6]	G	C	2.790e^-4	0.97	INTRON Spn
2R	9209397	2R_9209397_SNP [dm3] 2R_13321892_SNP [dm6]	C	T	2.790e^-4	0.97	INTERGENIC
2R	9203420	2R_9203420_SNP [dm3] 2R_13315915_SNP [dm6]	T	C	2.793e^-4	0.97	INTERGENIC
3R	3705367	3R_3705367_SNP [dm3] 3R_7879645_SNP [dm6]	T	C	2.795e^-4	0.97	INTRON CG17816
2R	19145051	2R_19145051_SNP [dm3] 2R_23257528_SNP [dm6]	A	G	2.802e^-4	0.97	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8867633	3L_8867633_SNP [dm3] 3L_8874533_SNP [dm6]	C	T	2.814e^-4	0.97	INTRON dally
2R	17665502	2R_17665502_SNP [dm3] 2R_21777997_SNP [dm6]	G	A	2.820e^-4	0.97	INTERGENIC
3L	1547230	3L_1547230_SNP [dm3] 3L_1547230_SNP [dm6]	C	T	2.825e^-4	0.97	UPSTREAM Cct1 INTRON Cct1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11834609	2R_11834609_SNP [dm3] 2R_15947104_SNP [dm6]	G	C	2.826e^-4	0.97	UTR_3_PRIME Cyp4aa1 & 1 other
X	17179094	X_17179094_SNP [dm3] X_17285061_SNP [dm6]	C	T	2.830e^-4	0.97	UPSTREAM CG8661 DOWNSTREAM Fim INTRON CG5445
2L	11085946	2L_11085946_SNP [dm3] 2L_11085946_SNP [dm6]	C	A	2.832e^-4	0.97	UPSTREAM AstCC & 1 other INTERGENIC
3R	24122885	3R_24122885_INS [dm3] 3R_28297163_INS [dm6]	T	TGT	2.839e^-4	0.97	INTERGENIC
3R	14463870	3R_14463870_SNP [dm3] 3R_18638148_SNP [dm6]	C	A	2.843e^-4	0.97	INTRON qin & 1 other
2R	6226803	2R_6226803_SNP [dm3] 2R_10339298_SNP [dm6]	T	C	2.852e^-4	0.97	SPLICE_SITE_REGION CG42732 INTRON CG42732
3R	27002620	3R_27002620_SNP [dm3] 3R_31176898_SNP [dm6]	G	T	2.864e^-4	0.97	INTRON Gycbeta100B
3L	18452164	3L_18452164_SNP [dm3] 3L_18459064_SNP [dm6]	A	T	2.880e^-4	0.97	DOWNSTREAM CG32196 INTERGENIC
2L	15760664	2L_15760664_SNP [dm3] 2L_15760664_SNP [dm6]	T	C	2.886e^-4	0.97	INTRON Gli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	8883139	2L_8883139_SNP [dm3] 2L_8883139_SNP [dm6]	C	G	2.887e^-4	0.97	INTERGENIC
3L	8363402	3L_8363402_SNP [dm3] 3L_8370302_SNP [dm6]	G	A	2.887e^-4	0.97	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	16804504	2L_16804504_SNP [dm3] 2L_16804504_SNP [dm6]	A	C	2.894e^-4	0.97	UPSTREAM CG13272 & 1 other INTRON CG13280
3L	13094269	3L_13094269_SNP [dm3] 3L_13101169_SNP [dm6]	G	A	2.896e^-4	0.97	DOWNSTREAM CR44554 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13663697	X_13663697_SNP [dm3] X_13769664_SNP [dm6]	G	T	2.897e^-4	0.97	INTRON rdgB
3R	13559405	3R_13559405_SNP [dm3] 3R_17733683_SNP [dm6]	C	T	2.899e^-4	0.97	NON_SYNONYMOUS_CODING CG14321 DOWNSTREAM Lgr1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	21547103	3R_21547103_SNP [dm3] 3R_25721381_SNP [dm6]	C	A	2.903e^-4	0.97	INTRON LpR2
3L	1403624	3L_1403624_SNP [dm3] 3L_1403624_SNP [dm6]	A	G	2.906e^-4	0.97	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	19376296	3L_19376296_SNP [dm3] 3L_19383196_SNP [dm6]	A	G	2.914e^-4	0.97	INTRON CG32206
2R	10150805	2R_10150805_SNP [dm3] 2R_14263300_SNP [dm6]	G	T	2.916e^-4	0.97	SYNONYMOUS_CODING CG8547	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	21922396	X_21922396_SNP [dm3] X_22520560_SNP [dm6]	C	T	2.916e^-4	0.97	INTRON CG17600
3L	11307444	3L_11307444_SNP [dm3] 3L_11314344_SNP [dm6]	C	A	2.934e^-4	0.97	UPSTREAM CR44361 DOWNSTREAM CG7573 INTERGENIC
3R	25566959	3R_25566959_SNP [dm3] 3R_29741237_SNP [dm6]	T	C	2.935e^-4	0.97	SYNONYMOUS_CODING CG1969 DOWNSTREAM CG7609
X	2407653	X_2407653_SNP [dm3] X_2513620_SNP [dm6]	C	T	2.936e^-4	0.97	INTRON trol
2R	10809178	2R_10809178_DEL [dm3] 2R_14921673_DEL [dm6]	GG	G	2.938e^-4	0.97	INTRON CG10249
X	20410187	X_20410187_DEL [dm3] X_20539160_DEL [dm6]	AA	A	2.943e^-4	0.97	INTRON RunxB
3R	14919805	3R_14919805_SNP [dm3] 3R_19094083_SNP [dm6]	T	A	2.946e^-4	0.97	UTR_5_PRIME cdi UPSTREAM ATPsyn-d DOWNSTREAM mRpL55	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_Ubx
2R	10809190	2R_10809190_SNP [dm3] 2R_14921685_SNP [dm6]	T	A	2.948e^-4	0.97	INTRON CG10249
2R	11792520	2R_11792520_INS [dm3] 2R_15905015_INS [dm6]	A	ATTCCTTGTAGAGTGGCAT...	2.952e^-4	0.97	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3L	5216881	3L_5216881_SNP [dm3] 3L_5223781_SNP [dm6]	G	A	2.958e^-4	0.97	INTRON shep
2R	17420148	2R_17420148_SNP [dm3] 2R_21532643_SNP [dm6]	G	T	2.964e^-4	0.97	UPSTREAM CR44725 INTRON Egfr
3L	9666801	3L_9666801_SNP [dm3] 3L_9673701_SNP [dm6]	A	G	2.974e^-4	0.97	INTRON fry
3L	12389683	3L_12389683_SNP [dm3] 3L_12396583_SNP [dm6]	T	C	2.976e^-4	0.97	INTRON CG32104 & 1 other	TF binding site BDTNP1_TFBS_twi
2L	19632171	2L_19632171_SNP [dm3] 2L_19632171_SNP [dm6]	A	G	2.989e^-4	0.97	INTRON Lar
2R	20512422	2R_20512422_SNP [dm3] 2R_24624899_SNP [dm6]	G	A	2.991e^-4	0.97	INTRON CG13594
3R	21471993	3R_21471993_SNP [dm3] 3R_25646271_SNP [dm6]	G	A	2.991e^-4	0.97	UPSTREAM mir-92a & 1 other INTRON jigr1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14133457	X_14133457_SNP [dm3] X_14239424_SNP [dm6]	C	T	2.994e^-4	0.97	SYNONYMOUS_CODING CG1434 DOWNSTREAM mRNA-cap	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	13808649	2R_13808649_SNP [dm3] 2R_17921144_SNP [dm6]	C	T	2.997e^-4	0.97	SPLICE_SITE_REGION Elk SYNONYMOUS_CODING Elk
3R	26879026	3R_26879026_SNP [dm3] 3R_31053304_SNP [dm6]	C	T	2.998e^-4	0.97	NON_SYNONYMOUS_CODING l_3_03670 DOWNSTREAM Aph-4 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	4872506	3L_4872506_SNP [dm3] 3L_4872506_SNP [dm6]	A	G	3.005e^-4	0.97	SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3276530	2L_3276530_SNP [dm3] 2L_3276530_SNP [dm6]	C	T	3.006e^-4	0.97	SPLICE_SITE_REGION CG3332 INTRON CG3332	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8331638	3L_8331638_SNP [dm3] 3L_8338538_SNP [dm6]	G	A	3.011e^-4	0.97	UTR_3_PRIME Cpr66Cb UPSTREAM Pex2
3L	18205510	3L_18205510_SNP [dm3] 3L_18212410_SNP [dm6]	C	T	3.012e^-4	0.97	INTERGENIC
3L	1901306	3L_1901306_SNP [dm3] 3L_1901306_SNP [dm6]	T	C	3.024e^-4	0.97	UTR_3_PRIME CG1887 INTRON CG1887	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA
3R	25556312	3R_25556312_SNP [dm3] 3R_29730590_SNP [dm6]	A	G	3.024e^-4	0.97	INTRON Kul	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	7844997	2R_7844997_SNP [dm3] 2R_11957492_SNP [dm6]	A	G	3.026e^-4	0.97	INTRON CG13188	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	9225834	2R_9225834_SNP [dm3] 2R_13338329_SNP [dm6]	G	A	3.035e^-4	0.97	INTRON CR44206	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_Trl
X	7222142	X_7222142_INS [dm3] X_7328109_INS [dm6]	T	TAA	3.041e^-4	0.97	UTR_3_PRIME Dok UPSTREAM CG18155 INTRON CR44357 & 1 other
2R	13122944	2R_13122944_SNP [dm3] 2R_17235439_SNP [dm6]	T	C	3.043e^-4	0.97	INTRON mbl
3L	8322611	3L_8322611_SNP [dm3] 3L_8329511_SNP [dm6]	G	C	3.043e^-4	0.97	NON_SYNONYMOUS_CODING CG34462	TF binding site mE1_TFBS_ttk
3R	13559418	3R_13559418_SNP [dm3] 3R_17733696_SNP [dm6]	A	G	3.044e^-4	0.97	NON_SYNONYMOUS_CODING CG14321 DOWNSTREAM Lgr1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	17262143	X_17262143_SNP [dm3] X_17368110_SNP [dm6]	T	C	3.061e^-4	0.97	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	9203456	2R_9203456_INS [dm3] 2R_13315951_INS [dm6]	C	CC	3.062e^-4	0.97	INTERGENIC
2L	582615	2L_582615_SNP [dm3] 2L_582615_SNP [dm6]	T	C	3.068e^-4	0.97	DOWNSTREAM Gsc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	18392570	3R_18392570_SNP [dm3] 3R_22566848_SNP [dm6]	T	A	3.074e^-4	0.97	INTERGENIC
3R	23055641	3R_23055641_SNP [dm3] 3R_27229919_SNP [dm6]	A	T	3.078e^-4	0.97	SYNONYMOUS_CODING CG31064 UPSTREAM CG42814 DOWNSTREAM CG31064	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25556582	3R_25556582_SNP [dm3] 3R_29730860_SNP [dm6]	T	A	3.079e^-4	0.97	INTRON Kul	TF binding site mE1_TFBS_cad
2R	10830239	2R_10830239_SNP [dm3] 2R_14942734_SNP [dm6]	G	A	3.082e^-4	0.97	UTR_5_PRIME CG10257
3L	20427243	3L_20427243_SNP [dm3] 3L_20434143_SNP [dm6]	G	T	3.084e^-4	0.97	NON_SYNONYMOUS_CODING Psn DOWNSTREAM mRpL15
X	12486286	X_12486286_SNP [dm3] X_12592253_SNP [dm6]	T	A	3.085e^-4	0.97	UPSTREAM LIMK1 DOWNSTREAM CG1824 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	10536562	3L_10536562_SNP [dm3] 3L_10543462_SNP [dm6]	T	G	3.095e^-4	0.97	INTRON A2bp1
2R	18437368	2R_18437368_SNP [dm3] 2R_22549863_SNP [dm6]	C	T	3.097e^-4	0.97	UPSTREAM CG6018 INTRON px
3L	8615585	3L_8615585_SNP [dm3] 3L_8622485_SNP [dm6]	C	G	3.103e^-4	0.97	SYNONYMOUS_CODING GAPsec DOWNSTREAM S-Lap2
3R	16170690	3R_16170690_SNP [dm3] 3R_20344968_SNP [dm6]	G	T	3.106e^-4	0.97	INTERGENIC
3L	14997361	3L_14997361_SNP [dm3] 3L_15004261_SNP [dm6]	C	T	3.108e^-4	0.97	SYNONYMOUS_CODING Reck	TF binding site mE1_TFBS_cad
3L	3574229	3L_3574229_SNP [dm3] 3L_3574229_SNP [dm6]	T	A	3.110e^-4	0.97	INTRON Eip63E
2R	9195475	2R_9195475_SNP [dm3] 2R_13307970_SNP [dm6]	T	G	3.117e^-4	0.97	INTERGENIC
2R	6002623	2R_6002623_SNP [dm3] 2R_10115118_SNP [dm6]	C	A	3.125e^-4	0.97	INTRON Pfk
X	21899029	X_21899029_SNP [dm3] X_22497193_SNP [dm6]	T	C	3.127e^-4	0.97	INTRON l_1_G0196
3L	18564571	3L_18564571_SNP [dm3] 3L_18571471_SNP [dm6]	T	G	3.145e^-4	0.97	INTRON AstC-R1
3R	26879695	3R_26879695_SNP [dm3] 3R_31053973_SNP [dm6]	G	A	3.150e^-4	0.97	UPSTREAM l_3_03670 DOWNSTREAM dco INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2R	14557704	2R_14557704_SNP [dm3] 2R_18670199_SNP [dm6]	A	G	3.151e^-4	0.97	INTRON edl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	9209394	2R_9209394_SNP [dm3] 2R_13321889_SNP [dm6]	A	T	3.157e^-4	0.97	INTERGENIC
2R	9123213	2R_9123213_SNP [dm3] 2R_13235708_SNP [dm6]	C	T	3.158e^-4	0.97	UPSTREAM CG4676 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6499963	3L_6499963_SNP [dm3] 3L_6506863_SNP [dm6]	C	A	3.158e^-4	0.97	INTRON sfl
X	18380340	X_18380340_SNP [dm3] X_18486307_SNP [dm6]	A	T	3.179e^-4	0.97	INTRON psh
2L	9183603	2L_9183603_INS [dm3] 2L_9183603_INS [dm6]	A	ATTGTA	3.183e^-4	0.97	INTRON tai	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	9256296	3R_9256296_SNP [dm3] 3R_13430574_SNP [dm6]	C	T	3.190e^-4	0.97	SYNONYMOUS_CODING yrt INTRON yrt
2R	9248867	2R_9248867_SNP [dm3] 2R_13361362_SNP [dm6]	C	T	3.196e^-4	0.97	DOWNSTREAM CR45312 INTERGENIC
3L	15455420	3L_15455420_SNP [dm3] 3L_15462320_SNP [dm6]	T	C	3.198e^-4	0.97	INTERGENIC
2L	9642906	2L_9642906_SNP [dm3] 2L_9642906_SNP [dm6]	A	C	3.209e^-4	0.97	INTRON Apoltp	TF binding site mE1_TFBS_chinmo
3R	9242142	3R_9242142_SNP [dm3] 3R_13416420_SNP [dm6]	T	A	3.214e^-4	0.97	INTERGENIC
3R	23919336	3R_23919336_SNP [dm3] 3R_28093614_SNP [dm6]	T	C	3.215e^-4	0.97	INTERGENIC
3R	7137129	3R_7137129_SNP [dm3] 3R_11311407_SNP [dm6]	A	C	3.221e^-4	0.97	DOWNSTREAM CR45055 INTERGENIC	TF binding site mE1_TFBS_Kr
3R	27077202	3R_27077202_SNP [dm3] 3R_31251480_SNP [dm6]	A	G	3.222e^-4	0.97	INTRON qless	TF binding site mE1_TFBS_bab1
2R	6153095	2R_6153095_SNP [dm3] 2R_10265590_SNP [dm6]	A	T	3.223e^-4	0.97	UPSTREAM CG12910 INTRON CG12910	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15823239	3L_15823239_SNP [dm3] 3L_15830139_SNP [dm6]	C	A	3.232e^-4	0.97	SYNONYMOUS_CODING dbo
3R	25519525	3R_25519525_SNP [dm3] 3R_29693803_SNP [dm6]	C	T	3.239e^-4	0.97	SYNONYMOUS_CODING dmrt99B	TF binding site mE1_TFBS_chinmo
3R	9234852	3R_9234852_SNP [dm3] 3R_13409130_SNP [dm6]	A	G	3.250e^-4	0.97	DOWNSTREAM yellow-e INTERGENIC
3R	7137122	3R_7137122_SNP [dm3] 3R_11311400_SNP [dm6]	G	T	3.262e^-4	0.97	DOWNSTREAM CR45055 INTERGENIC	TF binding site mE1_TFBS_Kr
3R	24675523	3R_24675523_SNP [dm3] 3R_28849801_SNP [dm6]	C	T	3.268e^-4	0.97	INTRON spg
X	9792047	X_9792047_SNP [dm3] X_9898014_SNP [dm6]	T	C	3.269e^-4	0.97	INTRON CG15249
3L	13410025	3L_13410025_SNP [dm3] 3L_13416925_SNP [dm6]	G	A	3.274e^-4	0.97	UTR_3_PRIME CG32121 DOWNSTREAM flr
3L	13051796	3L_13051796_SNP [dm3] 3L_13058696_SNP [dm6]	G	A	3.277e^-4	0.97	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16336123	X_16336123_SNP [dm3] X_16442090_SNP [dm6]	T	G	3.284e^-4	0.97	UPSTREAM CG9947 INTRON rngo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	25566950	3R_25566950_SNP [dm3] 3R_29741228_SNP [dm6]	C	T	3.290e^-4	0.97	SYNONYMOUS_CODING CG1969 DOWNSTREAM CG7609
3R	20333580	3R_20333580_SNP [dm3] 3R_24507858_SNP [dm6]	G	T	3.291e^-4	0.97	INTERGENIC
2R	9214046	2R_9214046_SNP [dm3] 2R_13326541_SNP [dm6]	A	C	3.292e^-4	0.97	INTERGENIC	TF binding site mE1_TFBS_cad
3R	27081255	3R_27081255_SNP [dm3] 3R_31255533_SNP [dm6]	G	A	3.292e^-4	0.97	SYNONYMOUS_CODING spn-F UPSTREAM CG1750	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3598643	2L_3598643_SNP [dm3] 2L_3598643_SNP [dm6]	A	G	3.304e^-4	0.97	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	13511569	2R_13511569_SNP [dm3] 2R_17624064_SNP [dm6]	C	T	3.307e^-4	0.97	INTRON CG10936	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12577126	2R_12577126_SNP [dm3] 2R_16689621_SNP [dm6]	A	G	3.309e^-4	0.97	INTRON CG30463
2L	1936134	2L_1936134_SNP [dm3] 2L_1936134_SNP [dm6]	T	C	3.313e^-4	0.97	SYNONYMOUS_CODING CG7337	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	18925365	X_18925365_SNP [dm3] X_19031332_SNP [dm6]	T	C	3.327e^-4	0.97	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13146624	3R_13146624_SNP [dm3] 3R_17320902_SNP [dm6]	C	T	3.349e^-4	0.97	NON_SYNONYMOUS_CODING beat-IIa
2R	11657084	2R_11657084_INS [dm3] 2R_15769579_INS [dm6]	G	GG	3.350e^-4	0.97	INTRON Zasp52	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25961479	3R_25961479_SNP [dm3] 3R_30135757_SNP [dm6]	C	T	3.350e^-4	0.97	NON_SYNONYMOUS_CODING AdoR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	20494901	3L_20494901_SNP [dm3] 3L_20501801_SNP [dm6]	C	T	3.361e^-4	0.97	DOWNSTREAM CG18281 INTRON CG32425	transposable element FlyBase
2R	10222640	2R_10222640_SNP [dm3] 2R_14335135_SNP [dm6]	G	A	3.364e^-4	0.97	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad
3R	18998474	3R_18998474_SNP [dm3] 3R_23172752_SNP [dm6]	T	A	3.380e^-4	0.97	INTRON Irk1
3R	23503045	3R_23503045_SNP [dm3] 3R_27677323_SNP [dm6]	T	A	3.390e^-4	0.97	UPSTREAM CG5590 DOWNSTREAM unc80 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
3R	24306276	3R_24306276_SNP [dm3] 3R_28480554_SNP [dm6]	G	A	3.392e^-4	0.97	INTERGENIC
3L	14618136	3L_14618136_SNP [dm3] 3L_14625036_SNP [dm6]	C	A	3.392e^-4	0.97	INTRON CG9628	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	12255503	3L_12255503_SNP [dm3] 3L_12262403_SNP [dm6]	T	C	3.397e^-4	0.97	INTRON app	TF binding site mE1_TFBS_inv
3R	12031846	3R_12031846_SNP [dm3] 3R_16206124_SNP [dm6]	G	A	3.399e^-4	0.97	UPSTREAM mtSSB INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
2R	19706312	2R_19706312_DEL [dm3] 2R_23818789_DEL [dm6]	AA	A	3.400e^-4	0.97	UPSTREAM CG4797 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	14727897	2R_14727897_SNP [dm3] 2R_18840392_SNP [dm6]	A	G	3.408e^-4	0.97	SYNONYMOUS_CODING CG15099	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	1393194	X_1393194_SNP [dm3] X_1499161_SNP [dm6]	T	A	3.411e^-4	0.97	INTRON inc & 1 other
X	16352663	X_16352663_SNP [dm3] X_16458630_SNP [dm6]	A	T	3.415e^-4	0.97	UTR_3_PRIME para DOWNSTREAM para	TF binding site BDTNP1_TFBS_dl
X	4620220	X_4620220_SNP [dm3] X_4726187_SNP [dm6]	T	C	3.424e^-4	0.97	INTRON Proc-R	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5114265	2L_5114265_SNP [dm3] 2L_5114265_SNP [dm6]	A	T	3.425e^-4	0.97	INTRON Msp300
3L	4105615	3L_4105615_SNP [dm3] 3L_4105615_SNP [dm6]	G	A	3.426e^-4	0.97	SYNONYMOUS_CODING Fit1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	11297190	3L_11297190_SNP [dm3] 3L_11304090_SNP [dm6]	C	A	3.431e^-4	0.97	INTERGENIC	TF binding site mE1_TFBS_HSA
X	14224544	X_14224544_SNP [dm3] X_14330511_SNP [dm6]	T	A	3.433e^-4	0.97	INTRON dpr8
3R	14842086	3R_14842086_SNP [dm3] 3R_19016364_SNP [dm6]	A	T	3.436e^-4	0.97	SYNONYMOUS_CODING gukh INTRON gukh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
X	12585036	X_12585036_SNP [dm3] X_12691003_SNP [dm6]	T	C	3.439e^-4	0.97	SYNONYMOUS_CODING Smr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	10885470	X_10885470_SNP [dm3] X_10991437_SNP [dm6]	G	A	3.442e^-4	0.97	INTRON CG42339	TF binding site mE1_TFBS_sens
2R	9209829	2R_9209829_INS [dm3] 2R_13322324_INS [dm6]	T	TCTACT	3.451e^-4	0.97	INTERGENIC
3R	25540087	3R_25540087_SNP [dm3] 3R_29714365_SNP [dm6]	C	T	3.451e^-4	0.97	UPSTREAM Obp99d & 1 other DOWNSTREAM Dup99B INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	25556580	3R_25556580_SNP [dm3] 3R_29730858_SNP [dm6]	A	T	3.454e^-4	0.97	INTRON Kul	TF binding site mE1_TFBS_cad
X	8018414	X_8018414_SNP [dm3] X_8124381_SNP [dm6]	G	A	3.455e^-4	0.97	INTRON cyr	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3878333	3L_3878333_SNP [dm3] 3L_3878333_SNP [dm6]	G	T	3.457e^-4	0.97	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	25961482	3R_25961482_SNP [dm3] 3R_30135760_SNP [dm6]	T	C	3.468e^-4	0.97	NON_SYNONYMOUS_CODING AdoR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10353798	3L_10353798_SNP [dm3] 3L_10360698_SNP [dm6]	A	T	3.469e^-4	0.97	EXON CR44327	TF binding site mE1_TFBS_cad
2R	8779611	2R_8779611_SNP [dm3] 2R_12892106_SNP [dm6]	G	A	3.472e^-4	0.97	INTRON vg	TF binding site mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3R	27073476	3R_27073476_DEL [dm3] 3R_31247754_DEL [dm6]	GTAGCTGGG	G	3.473e^-4	0.97	INTRON qless
X	5830692	X_5830692_SNP [dm3] X_5936659_SNP [dm6]	C	T	3.475e^-4	0.97	INTRON CG3726
2L	19913221	2L_19913221_SNP [dm3] 2L_19913221_SNP [dm6]	G	C	3.486e^-4	0.97	NON_SYNONYMOUS_CODING Victoria UPSTREAM TotF INTRON sick
2L	927427	2L_927427_SNP [dm3] 2L_927427_SNP [dm6]	A	G	3.493e^-4	0.97	INTRON CG4341
3R	3755154	3R_3755154_SNP [dm3] 3R_7929432_SNP [dm6]	G	A	3.494e^-4	0.97	INTRON dsx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	5804972	3L_5804972_SNP [dm3] 3L_5811872_SNP [dm6]	C	T	3.494e^-4	0.97	SYNONYMOUS_CODING CG5537 UPSTREAM S6k DOWNSTREAM mad2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
2L	10790616	2L_10790616_SNP [dm3] 2L_10790616_SNP [dm6]	C	T	3.510e^-4	0.97	NON_SYNONYMOUS_CODING CG31870 INTRON CG31869
2R	18866549	2R_18866549_SNP [dm3] 2R_22979026_SNP [dm6]	G	T	3.512e^-4	0.97	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15939774	2R_15939774_SNP [dm3] 2R_20052269_SNP [dm6]	C	T	3.513e^-4	0.97	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	16220447	3R_16220447_SNP [dm3] 3R_20394725_SNP [dm6]	T	C	3.538e^-4	0.97	INTRON Gfrl
3L	9431871	3L_9431871_SNP [dm3] 3L_9438771_SNP [dm6]	T	C	3.540e^-4	0.97	UTR_3_PRIME Bet3 DOWNSTREAM MTF-1 INTRON MTF-1
2L	3407546	2L_3407546_SNP [dm3] 2L_3407546_SNP [dm6]	A	T	3.540e^-4	0.97	SYNONYMOUS_CODING pgant2
3L	8037259	3L_8037259_SNP [dm3] 3L_8044159_SNP [dm6]	A	G	3.543e^-4	0.97	INTRON nmo
2R	19447284	2R_19447284_SNP [dm3] 2R_23559761_SNP [dm6]	C	T	3.543e^-4	0.97	SYNONYMOUS_CODING ItgalphaPS5 UPSTREAM Pi3K59F
2R	19706319	2R_19706319_SNP [dm3] 2R_23818796_SNP [dm6]	A	T	3.546e^-4	0.97	UPSTREAM CG4797 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
X	7622936	X_7622936_SNP [dm3] X_7728903_SNP [dm6]	G	A	3.559e^-4	0.97	UTR_5_PRIME CG12155 UPSTREAM NELF-B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	4059686	2L_4059686_SNP [dm3] 2L_4059686_SNP [dm6]	A	G	3.569e^-4	0.97	INTRON ed
2L	12283043	2L_12283043_SNP [dm3] 2L_12283043_SNP [dm6]	A	G	3.570e^-4	0.97	INTRON aret
3R	16348988	3R_16348988_DEL [dm3] 3R_20523266_DEL [dm6]	TTAA	T	3.571e^-4	0.97	INTERGENIC
3R	26879531	3R_26879531_SNP [dm3] 3R_31053809_SNP [dm6]	T	C	3.572e^-4	0.97	DOWNSTREAM dco INTRON l_3_03670	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3R	9252382	3R_9252382_SNP [dm3] 3R_13426660_SNP [dm6]	G	A	3.578e^-4	0.97	SYNONYMOUS_CODING Act87E UPSTREAM CR45591	TF binding site BDTNP1_TFBS_twi
3L	8331646	3L_8331646_SNP [dm3] 3L_8338546_SNP [dm6]	A	G	3.579e^-4	0.97	UTR_3_PRIME Cpr66Cb UPSTREAM Pex2	TF binding site BDTNP1_TFBS_dl
2R	19498178	2R_19498178_SNP [dm3] 2R_23610655_SNP [dm6]	C	A	3.582e^-4	0.97	INTRON CG17664 & 1 other
2L	19632262	2L_19632262_SNP [dm3] 2L_19632262_SNP [dm6]	T	C	3.591e^-4	0.97	INTRON Lar
X	21906092	X_21906092_SNP [dm3] X_22504256_SNP [dm6]	A	G	3.591e^-4	0.97	UTR_3_PRIME l_1_G0196 DOWNSTREAM l_1_G0196 INTRON l_1_G0196
X	10883880	X_10883880_SNP [dm3] X_10989847_SNP [dm6]	A	C	3.597e^-4	0.97	INTRON CG42339
2L	3676671	2L_3676671_SNP [dm3] 2L_3676671_SNP [dm6]	C	A	3.601e^-4	0.97	INTRON CG34340
2L	1374550	2L_1374550_SNP [dm3] 2L_1374550_SNP [dm6]	A	C	3.603e^-4	0.97	INTERGENIC
3R	26045556	3R_26045556_SNP [dm3] 3R_30219834_SNP [dm6]	G	A	3.619e^-4	0.97	INTERGENIC
3R	9241414	3R_9241414_SNP [dm3] 3R_13415692_SNP [dm6]	T	C	3.624e^-4	0.97	UPSTREAM yellow-e INTERGENIC
3L	9340735	3L_9340735_SNP [dm3] 3L_9347635_SNP [dm6]	A	G	3.624e^-4	0.97	DOWNSTREAM PGRP-LC INTRON PGRP-LC
3L	3540303	3L_3540303_SNP [dm3] 3L_3540303_SNP [dm6]	C	T	3.625e^-4	0.97	INTRON Eip63E
2R	9217438	2R_9217438_SNP [dm3] 2R_13329933_SNP [dm6]	C	G	3.628e^-4	0.97	UPSTREAM mir-184 EXON CR44206	TF binding site mE1_TFBS_cad
2L	16804503	2L_16804503_SNP [dm3] 2L_16804503_SNP [dm6]	C	T	3.630e^-4	0.97	UPSTREAM CG13272 & 1 other INTRON CG13280
2R	12581856	2R_12581856_SNP [dm3] 2R_16694351_SNP [dm6]	C	T	3.631e^-4	0.97	DOWNSTREAM CG5210 INTRON CG30463
2L	10834576	2L_10834576_SNP [dm3] 2L_10834576_SNP [dm6]	A	G	3.635e^-4	0.97	INTRON Nos
X	7503731	X_7503731_SNP [dm3] X_7609698_SNP [dm6]	C	T	3.635e^-4	0.97	INTRON ct	TF binding site BDTNP1_TFBS_z
2L	8449486	2L_8449486_SNP [dm3] 2L_8449486_SNP [dm6]	T	C	3.647e^-4	0.97	UTR_5_PRIME U26 DOWNSTREAM fu12
3R	25991376	3R_25991376_SNP [dm3] 3R_30165654_SNP [dm6]	A	G	3.650e^-4	0.97	SYNONYMOUS_CODING CG31030 DOWNSTREAM CG31028	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	25556602	3R_25556602_SNP [dm3] 3R_29730880_SNP [dm6]	G	A	3.650e^-4	0.97	INTRON Kul	TF binding site mE1_TFBS_cad
2L	19913104	2L_19913104_DEL [dm3] 2L_19913104_DEL [dm6]	GACAACCATCCTCC...	A	3.653e^-4	0.97	UPSTREAM TotF INTRON sick
3R	25461280	3R_25461280_DEL [dm3] 3R_29635558_DEL [dm6]	GTG	G	3.658e^-4	0.97	INTRON Dop1R2
2R	8964564	2R_8964564_INS [dm3] 2R_13077059_INS [dm6]	C	CC	3.663e^-4	0.97	INTRON Drl-2
2L	7190204	2L_7190204_SNP [dm3] 2L_7190204_SNP [dm6]	A	T	3.693e^-4	0.973	UPSTREAM CG4496 DOWNSTREAM CG4497 INTERGENIC
2R	8695358	2R_8695358_SNP [dm3] 2R_12807853_SNP [dm6]	C	A	3.694e^-4	0.973	DOWNSTREAM CG17580 INTERGENIC
2R	9224439	2R_9224439_SNP [dm3] 2R_13336934_SNP [dm6]	T	A	3.696e^-4	0.973	INTRON CR44206	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	5216882	3L_5216882_SNP [dm3] 3L_5223782_SNP [dm6]	C	A	3.697e^-4	0.973	INTRON shep
3L	20492547	3L_20492547_SNP [dm3] 3L_20499447_SNP [dm6]	T	G	3.699e^-4	0.973	UPSTREAM CG18281 INTRON CG32425
3R	25562382	3R_25562382_SNP [dm3] 3R_29736660_SNP [dm6]	A	T	3.720e^-4	0.974	UTR_5_PRIME CG7601 UPSTREAM CG7598	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	17885177	2R_17885177_SNP [dm3] 2R_21997672_SNP [dm6]	C	G	3.742e^-4	0.974	INTRON CG34370
2R	9255693	2R_9255693_SNP [dm3] 2R_13368188_SNP [dm6]	T	A	3.751e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	2697886	2L_2697886_SNP [dm3] 2L_2697886_SNP [dm6]	T	A	3.754e^-4	0.974	INTRON CG31690
3L	15819446	3L_15819446_SNP [dm3] 3L_15826346_SNP [dm6]	T	C	3.762e^-4	0.974	UTR_5_PRIME Dcp2 UPSTREAM dbo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	20521078	3L_20521078_SNP [dm3] 3L_20527978_SNP [dm6]	T	C	3.775e^-4	0.974	UTR_3_PRIME Rcd2 DOWNSTREAM CG4858
2L	1936089	2L_1936089_SNP [dm3] 2L_1936089_SNP [dm6]	C	G	3.775e^-4	0.974	SYNONYMOUS_CODING CG7337	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	21645630	3R_21645630_SNP [dm3] 3R_25819908_SNP [dm6]	C	T	3.780e^-4	0.974	INTERGENIC
2R	9213467	2R_9213467_SNP [dm3] 2R_13325962_SNP [dm6]	G	T	3.783e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_cad
X	16861282	X_16861282_DEL [dm3] X_16967249_DEL [dm6]	GGAATTGAAAA...	TC	3.785e^-4	0.974	INTRON CG9086	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3R	27219002	3R_27219002_SNP [dm3] 3R_31393280_SNP [dm6]	A	G	3.788e^-4	0.974	NON_SYNONYMOUS_CODING CG31204 DOWNSTREAM CG31002
2R	9209800	2R_9209800_SNP [dm3] 2R_13322295_SNP [dm6]	A	C	3.788e^-4	0.974	INTERGENIC
3L	21069642	3L_21069642_SNP [dm3] 3L_21076542_SNP [dm6]	A	G	3.790e^-4	0.974	SYNONYMOUS_CODING ko	TF binding site mE1_TFBS_cad
2R	15798141	2R_15798141_SNP [dm3] 2R_19910636_SNP [dm6]	G	T	3.791e^-4	0.974	EXON CR44573
2R	16962723	2R_16962723_SNP [dm3] 2R_21075218_SNP [dm6]	C	T	3.802e^-4	0.974	UPSTREAM Treh INTRON Treh	TF binding site mE1_TFBS_Trl
2R	19706086	2R_19706086_SNP [dm3] 2R_23818563_SNP [dm6]	A	C	3.805e^-4	0.974	UPSTREAM CG4797 INTERGENIC	TF binding site mE1_TFBS_kn
X	7650328	X_7650328_SNP [dm3] X_7756295_SNP [dm6]	G	C	3.806e^-4	0.974	INTERGENIC
2R	10831586	2R_10831586_SNP [dm3] 2R_14944081_SNP [dm6]	A	T	3.811e^-4	0.974	DOWNSTREAM aPKC INTRON CG10257	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10888116	2R_10888116_SNP [dm3] 2R_15000611_SNP [dm6]	G	A	3.812e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	7954419	2R_7954419_SNP [dm3] 2R_12066914_SNP [dm6]	A	T	3.823e^-4	0.974	INTRON CG8888	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	15262224	3R_15262224_SNP [dm3] 3R_19436502_SNP [dm6]	G	A	3.834e^-4	0.974	INTRON CG31221
3R	13647745	3R_13647745_SNP [dm3] 3R_17822023_SNP [dm6]	A	T	3.838e^-4	0.974	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	7638234	X_7638234_SNP [dm3] X_7744201_SNP [dm6]	T	C	3.840e^-4	0.974	INTERGENIC
3L	14566901	3L_14566901_SNP [dm3] 3L_14573801_SNP [dm6]	G	T	3.841e^-4	0.974	INTERGENIC
3R	26114522	3R_26114522_SNP [dm3] 3R_30288800_SNP [dm6]	T	A	3.860e^-4	0.974	INTRON hdc
X	2763498	X_2763498_SNP [dm3] X_2869465_SNP [dm6]	G	A	3.870e^-4	0.974	INTRON kirre
X	18503475	X_18503475_SNP [dm3] X_18609442_SNP [dm6]	G	C	3.872e^-4	0.974	NON_SYNONYMOUS_CODING CG15040	TF binding site mE1_TFBS_chinmo
X	16697821	X_16697821_SNP [dm3] X_16803788_SNP [dm6]	T	A	3.874e^-4	0.974	NON_SYNONYMOUS_CODING CG13005 UPSTREAM CG9125	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	9256290	3R_9256290_SNP [dm3] 3R_13430568_SNP [dm6]	C	T	3.880e^-4	0.974	SYNONYMOUS_CODING yrt INTRON yrt
2R	11377227	2R_11377227_SNP [dm3] 2R_15489722_SNP [dm6]	C	G	3.882e^-4	0.974	SYNONYMOUS_CODING CG12964
2R	11834020	2R_11834020_SNP [dm3] 2R_15946515_SNP [dm6]	G	A	3.884e^-4	0.974	SYNONYMOUS_CODING Cyp4aa1 DOWNSTREAM mir-4919 & 1 other	TF binding site mE1_TFBS_sens
2R	19706387	2R_19706387_SNP [dm3] 2R_23818864_SNP [dm6]	G	A	3.886e^-4	0.974	UPSTREAM CG4797 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	11378608	2R_11378608_SNP [dm3] 2R_15491103_SNP [dm6]	G	A	3.904e^-4	0.974	INTRON CG12964
2R	17756105	2R_17756105_SNP [dm3] 2R_21868600_SNP [dm6]	G	A	3.906e^-4	0.974	INTERGENIC
2R	2400493	2R_2400493_SNP [dm3] 2R_6512988_SNP [dm6]	G	A	3.913e^-4	0.974	INTRON jing	TF binding site BDTNP1_TFBS_dl
X	21940886	X_21940886_INS [dm3] X_22539050_INS [dm6]	A	AT	3.917e^-4	0.974	INTRON CG17600 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	16960138	2R_16960138_SNP [dm3] 2R_21072633_SNP [dm6]	C	A	3.924e^-4	0.974	DOWNSTREAM CR44704 INTRON CG10527	TF binding site mE1_TFBS_Trl
X	9497043	X_9497043_SNP [dm3] X_9603010_SNP [dm6]	G	A	3.931e^-4	0.974	SYNONYMOUS_CODING Gga	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	12338778	X_12338778_SNP [dm3] X_12444745_SNP [dm6]	A	C	3.938e^-4	0.974	SYNONYMOUS_CODING Pkcdelta INTRON Pkcdelta
X	11630953	X_11630953_SNP [dm3] X_11736920_SNP [dm6]	A	T	3.941e^-4	0.974	DOWNSTREAM CG15221 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
X	16413427	X_16413427_SNP [dm3] X_16519394_SNP [dm6]	G	A	3.941e^-4	0.974	INTRON para
3L	20408571	3L_20408571_SNP [dm3] 3L_20415471_SNP [dm6]	T	C	3.970e^-4	0.974	INTRON zye
3R	3740464	3R_3740464_SNP [dm3] 3R_7914742_SNP [dm6]	A	G	3.979e^-4	0.974	INTRON CG2678	TF binding site BDTNP1_TFBS_da
2R	6286230	2R_6286230_INS [dm3] 2R_10398725_INS [dm6]	A	GTTCTTGTCT	3.985e^-4	0.974	INTRON CG42732
2R	10831371	2R_10831371_SNP [dm3] 2R_14943866_SNP [dm6]	G	A	3.987e^-4	0.974	SYNONYMOUS_CODING CG10257 DOWNSTREAM aPKC
3R	9237851	3R_9237851_SNP [dm3] 3R_13412129_SNP [dm6]	A	T	3.998e^-4	0.974	INTRON yellow-e
3L	14191123	3L_14191123_DEL [dm3] 3L_14198023_DEL [dm6]	AATAAATAAA	A	4.028e^-4	0.974	INTRON nuf
X	16609842	X_16609842_SNP [dm3] X_16715809_SNP [dm6]	A	G	4.029e^-4	0.974	INTRON CG34325
2L	7758093	2L_7758093_SNP [dm3] 2L_7758093_SNP [dm6]	C	A	4.030e^-4	0.974	INTRON CG7196
X	15059536	X_15059536_SNP [dm3] X_15165503_SNP [dm6]	T	C	4.030e^-4	0.974	INTERGENIC
X	19077847	X_19077847_SNP [dm3] X_19183814_SNP [dm6]	C	T	4.033e^-4	0.974	UPSTREAM CG33253 INTRON CG33253	TF binding site BDTNP1_TFBS_dl
X	19077848	X_19077848_SNP [dm3] X_19183815_SNP [dm6]	T	A	4.033e^-4	0.974	UPSTREAM CG33253 INTRON CG33253	TF binding site BDTNP1_TFBS_dl
2L	12026632	2L_12026632_SNP [dm3] 2L_12026632_SNP [dm6]	T	A	4.052e^-4	0.974	UPSTREAM dmGlut INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	19617905	X_19617905_SNP [dm3] X_19723872_SNP [dm6]	C	T	4.052e^-4	0.974	SPLICE_SITE_REGION CG12531 INTRON CG12531
3L	17066321	3L_17066321_SNP [dm3] 3L_17073221_SNP [dm6]	C	A	4.052e^-4	0.974	DOWNSTREAM Rbp6 INTRON Rbp6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	21940935	X_21940935_SNP [dm3] X_22539099_SNP [dm6]	G	A	4.055e^-4	0.974	INTRON CG17600 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	3661659	3L_3661659_SNP [dm3] 3L_3661659_SNP [dm6]	C	T	4.057e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10610165	3R_10610165_SNP [dm3] 3R_14784443_SNP [dm6]	T	A	4.066e^-4	0.974	INTRON jvl
2L	16804498	2L_16804498_SNP [dm3] 2L_16804498_SNP [dm6]	C	T	4.069e^-4	0.974	UPSTREAM CG13272 & 1 other INTRON CG13280
3L	8331645	3L_8331645_SNP [dm3] 3L_8338545_SNP [dm6]	G	C	4.070e^-4	0.974	UTR_3_PRIME Cpr66Cb UPSTREAM Pex2	TF binding site BDTNP1_TFBS_dl
X	20748441	X_20748441_SNP [dm3] X_20877414_SNP [dm6]	T	C	4.078e^-4	0.974	INTRON shakB
3L	9713213	3L_9713213_SNP [dm3] 3L_9720113_SNP [dm6]	T	A	4.080e^-4	0.974	NON_SYNONYMOUS_CODING CG14174 UPSTREAM CG18178 DOWNSTREAM nbs	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11792480	2R_11792480_SNP [dm3] 2R_15904975_SNP [dm6]	T	C	4.083e^-4	0.974	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2R	12021038	2R_12021038_SNP [dm3] 2R_16133533_SNP [dm6]	A	G	4.093e^-4	0.974	SYNONYMOUS_CODING spin INTRON spin	TF binding site mE1_TFBS_cad
2L	14248555	2L_14248555_SNP [dm3] 2L_14248555_SNP [dm6]	A	C	4.095e^-4	0.974	INTERGENIC
X	12150874	X_12150874_SNP [dm3] X_12256841_SNP [dm6]	G	A	4.102e^-4	0.974	INTRON Ten-a
3R	8158698	3R_8158698_SNP [dm3] 3R_12332976_SNP [dm6]	A	G	4.113e^-4	0.974	INTERGENIC
2R	10850610	2R_10850610_SNP [dm3] 2R_14963105_SNP [dm6]	G	A	4.114e^-4	0.974	UPSTREAM ckn & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	20882981	X_20882981_INS [dm3] X_21011954_INS [dm6]	G	GG	4.116e^-4	0.974	INTERGENIC
X	4620823	X_4620823_DEL [dm3] X_4726790_DEL [dm6]	GCATTGAAAAG...	G	4.119e^-4	0.974	INTRON Proc-R	TF binding site mE1_TFBS_chinmo
X	4620839	X_4620839_SNP [dm3] X_4726806_SNP [dm6]	A	T	4.119e^-4	0.974	INTRON Proc-R	TF binding site mE1_TFBS_chinmo
X	4620840	X_4620840_SNP [dm3] X_4726807_SNP [dm6]	G	T	4.119e^-4	0.974	INTRON Proc-R	TF binding site mE1_TFBS_chinmo
2L	17809011	2L_17809011_SNP [dm3] 2L_17809011_SNP [dm6]	T	C	4.120e^-4	0.974	INTRON CadN2
2R	6155556	2R_6155556_SNP [dm3] 2R_10268051_SNP [dm6]	T	A	4.124e^-4	0.974	UPSTREAM CAP INTRON CG12910	TF binding site mE1_TFBS_chinmo
3L	5163548	3L_5163548_SNP [dm3] 3L_5170448_SNP [dm6]	G	A	4.124e^-4	0.974	SPLICE_SITE_REGION shep INTRON shep
2R	6746195	2R_6746195_SNP [dm3] 2R_10858690_SNP [dm6]	C	A	4.128e^-4	0.974	INTRON CG30015
3R	27228217	3R_27228217_SNP [dm3] 3R_31402495_SNP [dm6]	A	T	4.130e^-4	0.974	SYNONYMOUS_CODING CG11337 DOWNSTREAM Gcn2	TF binding site mE1_TFBS_cad
2R	16455457	2R_16455457_SNP [dm3] 2R_20567952_SNP [dm6]	C	G	4.131e^-4	0.974	INTRON qsm	TF binding site mE1_TFBS_chinmo
3R	16348985	3R_16348985_INS [dm3] 3R_20523263_INS [dm6]	C	CAA	4.135e^-4	0.974	INTERGENIC
3L	8571961	3L_8571961_SNP [dm3] 3L_8578861_SNP [dm6]	C	G	4.136e^-4	0.974	UTR_5_PRIME CG43078
2L	7190164	2L_7190164_SNP [dm3] 2L_7190164_SNP [dm6]	A	G	4.142e^-4	0.974	UPSTREAM CG4496 DOWNSTREAM CG4497 INTERGENIC
3R	10219667	3R_10219667_SNP [dm3] 3R_14393945_SNP [dm6]	G	T	4.142e^-4	0.974	SYNONYMOUS_CODING cv-c
3R	22360528	3R_22360528_SNP [dm3] 3R_26534806_SNP [dm6]	C	T	4.144e^-4	0.974	UTR_5_PRIME plum INTRON plum	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6153077	2R_6153077_SNP [dm3] 2R_10265572_SNP [dm6]	C	T	4.163e^-4	0.974	UPSTREAM CG12910 INTRON CG12910	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20882990	X_20882990_SNP [dm3] X_21011963_SNP [dm6]	T	C	4.170e^-4	0.974	INTERGENIC
3R	24543342	3R_24543342_SNP [dm3] 3R_28717620_SNP [dm6]	G	C	4.172e^-4	0.974	INTRON htt	TF binding site mE1_TFBS_chinmo
2L	17789691	2L_17789691_SNP [dm3] 2L_17789691_SNP [dm6]	A	C	4.180e^-4	0.974	INTRON CadN2
2L	4835195	2L_4835195_SNP [dm3] 2L_4835195_SNP [dm6]	A	T	4.199e^-4	0.974	UPSTREAM Ir25a DOWNSTREAM tank INTRON Ir25a
2L	4835198	2L_4835198_SNP [dm3] 2L_4835198_SNP [dm6]	C	A	4.199e^-4	0.974	UPSTREAM Ir25a DOWNSTREAM tank INTRON Ir25a
2L	4835216	2L_4835216_SNP [dm3] 2L_4835216_SNP [dm6]	T	A	4.199e^-4	0.974	UPSTREAM Ir25a DOWNSTREAM tank INTRON Ir25a
2L	4835217	2L_4835217_SNP [dm3] 2L_4835217_SNP [dm6]	A	T	4.199e^-4	0.974	UPSTREAM Ir25a DOWNSTREAM tank INTRON Ir25a
2R	9195555	2R_9195555_SNP [dm3] 2R_13308050_SNP [dm6]	A	T	4.199e^-4	0.974	INTERGENIC
3R	25556912	3R_25556912_SNP [dm3] 3R_29731190_SNP [dm6]	G	A	4.200e^-4	0.974	SYNONYMOUS_CODING Kul UTR_3_PRIME Kul	TF binding site mE1_TFBS_cad
3R	25203091	3R_25203091_SNP [dm3] 3R_29377369_SNP [dm6]	T	A	4.207e^-4	0.974	UPSTREAM Ptp99A INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	9890763	2R_9890763_SNP [dm3] 2R_14003258_SNP [dm6]	A	T	4.224e^-4	0.974	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	27369201	3R_27369201_SNP [dm3] 3R_31543479_SNP [dm6]	G	A	4.225e^-4	0.974	UTR_5_PRIME nyo	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
3L	797955	3L_797955_SNP [dm3] 3L_797955_SNP [dm6]	T	G	4.225e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	14119345	3L_14119345_SNP [dm3] 3L_14126245_SNP [dm6]	T	A	4.228e^-4	0.974	INTRON Sox21b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4428272	3L_4428272_SNP [dm3] 3L_4428272_SNP [dm6]	A	T	4.230e^-4	0.974	INTERGENIC
2R	13820755	2R_13820755_SNP [dm3] 2R_17933250_SNP [dm6]	C	T	4.236e^-4	0.974	INTERGENIC
2R	17840336	2R_17840336_INS [dm3] 2R_21952831_INS [dm6]	G	GG	4.248e^-4	0.974	DOWNSTREAM CG13488 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
3L	5527299	3L_5527299_SNP [dm3] 3L_5534199_SNP [dm6]	A	C	4.249e^-4	0.974	UTR_3_PRIME CG13285 DOWNSTREAM CG13285
2R	9891759	2R_9891759_SNP [dm3] 2R_14004254_SNP [dm6]	G	A	4.253e^-4	0.974	INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	20329338	3R_20329338_SNP [dm3] 3R_24503616_SNP [dm6]	G	A	4.259e^-4	0.974	INTERGENIC
2R	12132478	2R_12132478_SNP [dm3] 2R_16244973_SNP [dm6]	A	G	4.261e^-4	0.974	SYNONYMOUS_CODING CngA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16996634	3R_16996634_SNP [dm3] 3R_21170912_SNP [dm6]	T	C	4.263e^-4	0.974	INTRON SNF4Agamma
2L	18856734	2L_18856734_SNP [dm3] 2L_18856734_SNP [dm6]	T	C	4.264e^-4	0.974	SYNONYMOUS_CODING CG10602	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	2939397	3L_2939397_SNP [dm3] 3L_2939397_SNP [dm6]	G	A	4.268e^-4	0.974	INTRON Shab
3R	6570314	3R_6570314_SNP [dm3] 3R_10744592_SNP [dm6]	T	C	4.270e^-4	0.974	INTRON TkR86C
X	7622951	X_7622951_SNP [dm3] X_7728918_SNP [dm6]	G	A	4.278e^-4	0.974	UTR_5_PRIME CG12155 UPSTREAM NELF-B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	11080088	2R_11080088_SNP [dm3] 2R_15192583_SNP [dm6]	G	C	4.280e^-4	0.974	DOWNSTREAM Sfp51E INTERGENIC
X	7650323	X_7650323_SNP [dm3] X_7756290_SNP [dm6]	T	A	4.305e^-4	0.974	INTERGENIC
X	18941263	X_18941263_SNP [dm3] X_19047230_SNP [dm6]	C	A	4.305e^-4	0.974	INTERGENIC
3R	8651940	3R_8651940_INS [dm3] 3R_12826218_INS [dm6]	A	AA	4.322e^-4	0.974	INTERGENIC
3R	18562690	3R_18562690_SNP [dm3] 3R_22736968_SNP [dm6]	T	C	4.336e^-4	0.974	SYNONYMOUS_CODING Dcr-1	TF binding site mE1_TFBS_cad
2L	20253350	2L_20253350_SNP [dm3] 2L_20253350_SNP [dm6]	T	C	4.338e^-4	0.974	DOWNSTREAM CR40465 INTERGENIC
2L	9563969	2L_9563969_SNP [dm3] 2L_9563969_SNP [dm6]	T	G	4.342e^-4	0.974	INTRON jp
X	5461127	X_5461127_SNP [dm3] X_5567094_SNP [dm6]	C	T	4.344e^-4	0.974	INTERGENIC
2R	19706160	2R_19706160_SNP [dm3] 2R_23818637_SNP [dm6]	T	A	4.344e^-4	0.974	UPSTREAM CG4797 INTERGENIC	TF binding site mE1_TFBS_kn
3L	12389872	3L_12389872_SNP [dm3] 3L_12396772_SNP [dm6]	C	T	4.352e^-4	0.974	INTRON CG32104 & 1 other	TF binding site BDTNP1_TFBS_twi
3L	9809885	3L_9809885_SNP [dm3] 3L_9816785_SNP [dm6]	C	T	4.353e^-4	0.974	INTRON CG43897
3L	11127848	3L_11127848_SNP [dm3] 3L_11134748_SNP [dm6]	T	C	4.357e^-4	0.974	UPSTREAM CG14143 DOWNSTREAM CG42575 INTERGENIC
2R	9890556	2R_9890556_SNP [dm3] 2R_14003051_SNP [dm6]	G	A	4.361e^-4	0.974	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22130420	3R_22130420_SNP [dm3] 3R_26304698_SNP [dm6]	T	A	4.383e^-4	0.974	INTERGENIC
2L	19913202	2L_19913202_DEL [dm3] 2L_19913202_DEL [dm6]	TGTCAATCGTAGGCGAC...	T	4.389e^-4	0.974	FRAME_SHIFT Victoria UPSTREAM TotF INTRON sick
X	19541038	X_19541038_SNP [dm3] X_19647005_SNP [dm6]	G	A	4.396e^-4	0.974	UTR_3_PRIME Ranbp21 UPSTREAM Arp10
2R	13412107	2R_13412107_SNP [dm3] 2R_17524602_SNP [dm6]	G	A	4.404e^-4	0.974	INTRON Patronin	TF binding site mE1_TFBS_cad
3R	20130538	3R_20130538_SNP [dm3] 3R_24304816_SNP [dm6]	T	C	4.411e^-4	0.974	INTRON crb
3L	11785504	3L_11785504_SNP [dm3] 3L_11792404_SNP [dm6]	G	C	4.412e^-4	0.974	SYNONYMOUS_CODING CG5964	TF binding site mE1_TFBS_chinmo
3R	5418028	3R_5418028_SNP [dm3] 3R_9592306_SNP [dm6]	C	G	4.414e^-4	0.974	INTRON CG8312	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3R	22591028	3R_22591028_SNP [dm3] 3R_26765306_SNP [dm6]	T	C	4.416e^-4	0.974	INTERGENIC
2L	12026002	2L_12026002_SNP [dm3] 2L_12026002_SNP [dm6]	C	T	4.419e^-4	0.974	UPSTREAM CR44587 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	5946894	X_5946894_DEL [dm3] X_6052861_DEL [dm6]	CGGCTCAGCTC...	C	4.429e^-4	0.974	INTRON CG5921
2L	9561189	2L_9561189_SNP [dm3] 2L_9561189_SNP [dm6]	C	A	4.438e^-4	0.974	UPSTREAM jp INTRON jp
3R	20327446	3R_20327446_SNP [dm3] 3R_24501724_SNP [dm6]	A	G	4.442e^-4	0.974	INTERGENIC
2R	14180962	2R_14180962_SNP [dm3] 2R_18293457_SNP [dm6]	C	T	4.444e^-4	0.974	START_GAINED CG14502 UTR_5_PRIME CG14502 UPSTREAM CG14502 INTRON CG14502 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2L	9192036	2L_9192036_SNP [dm3] 2L_9192036_SNP [dm6]	A	T	4.445e^-4	0.974	INTRON tai
X	5995276	X_5995276_SNP [dm3] X_6101243_SNP [dm6]	C	T	4.445e^-4	0.974	SYNONYMOUS_CODING Nep1	TF binding site mE1_TFBS_chinmo
3L	15470342	3L_15470342_SNP [dm3] 3L_15477242_SNP [dm6]	A	T	4.453e^-4	0.974	INTERGENIC
3R	22423721	3R_22423721_SNP [dm3] 3R_26597999_SNP [dm6]	A	G	4.460e^-4	0.974	NON_SYNONYMOUS_CODING scrib INTRON scrib
3R	16229384	3R_16229384_SNP [dm3] 3R_20403662_SNP [dm6]	G	C	4.470e^-4	0.974	INTRON Gfrl
2R	16962654	2R_16962654_SNP [dm3] 2R_21075149_SNP [dm6]	G	A	4.498e^-4	0.974	UPSTREAM Treh INTRON Treh	TF binding site mE1_TFBS_Trl
3L	4373550	3L_4373550_SNP [dm3] 3L_4373550_SNP [dm6]	T	C	4.499e^-4	0.974	INTRON DopEcR
X	16159109	X_16159109_SNP [dm3] X_16265076_SNP [dm6]	T	G	4.503e^-4	0.974	DOWNSTREAM CG12507 INTERGENIC
2L	5114011	2L_5114011_SNP [dm3] 2L_5114011_SNP [dm6]	G	C	4.503e^-4	0.974	INTRON Msp300	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	3572114	2L_3572114_SNP [dm3] 2L_3572114_SNP [dm6]	T	A	4.507e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	20130516	3R_20130516_SNP [dm3] 3R_24304794_SNP [dm6]	T	G	4.512e^-4	0.974	INTRON crb
X	7999479	X_7999479_SNP [dm3] X_8105446_SNP [dm6]	T	C	4.515e^-4	0.974	SYNONYMOUS_CODING Gclc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	18400396	3R_18400396_SNP [dm3] 3R_22574674_SNP [dm6]	T	A	4.519e^-4	0.974	INTRON CG33110
X	18280975	X_18280975_SNP [dm3] X_18386942_SNP [dm6]	G	A	4.519e^-4	0.974	UPSTREAM Tsf1 INTERGENIC
3R	26879522	3R_26879522_SNP [dm3] 3R_31053800_SNP [dm6]	T	G	4.522e^-4	0.974	DOWNSTREAM dco INTRON l_3_03670	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3L	9992246	3L_9992246_SNP [dm3] 3L_9999146_SNP [dm6]	C	T	4.526e^-4	0.974	INTRON dpr6
3L	11127849	3L_11127849_SNP [dm3] 3L_11134749_SNP [dm6]	G	T	4.526e^-4	0.974	UPSTREAM CG14143 DOWNSTREAM CG42575 INTERGENIC
3L	13094310	3L_13094310_SNP [dm3] 3L_13101210_SNP [dm6]	C	T	4.528e^-4	0.974	DOWNSTREAM CR44554 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25452369	3R_25452369_SNP [dm3] 3R_29626647_SNP [dm6]	C	T	4.538e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	10888225	X_10888225_SNP [dm3] X_10994192_SNP [dm6]	T	A	4.544e^-4	0.974	INTRON CG42339
3L	6837526	3L_6837526_SNP [dm3] 3L_6844426_SNP [dm6]	C	G	4.550e^-4	0.974	INTERGENIC
2L	10423107	2L_10423107_SNP [dm3] 2L_10423107_SNP [dm6]	G	A	4.558e^-4	0.974	UPSTREAM CG5168 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	12338742	X_12338742_SNP [dm3] X_12444709_SNP [dm6]	A	G	4.558e^-4	0.974	SYNONYMOUS_CODING Pkcdelta INTRON Pkcdelta
3L	3942661	3L_3942661_SNP [dm3] 3L_3942661_SNP [dm6]	A	T	4.559e^-4	0.974	UPSTREAM CG14982 & 1 other INTERGENIC
3R	21472142	3R_21472142_SNP [dm3] 3R_25646420_SNP [dm6]	G	A	4.570e^-4	0.974	UPSTREAM mir-92a & 1 other INTRON jigr1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3785437	3R_3785437_SNP [dm3] 3R_7959715_SNP [dm6]	C	T	4.580e^-4	0.974	INTRON dsx	TF binding site mE1_TFBS_cad
3L	16546663	3L_16546663_SNP [dm3] 3L_16553563_SNP [dm6]	T	C	4.581e^-4	0.974	INTERGENIC
X	10411823	X_10411823_SNP [dm3] X_10517790_SNP [dm6]	G	A	4.581e^-4	0.974	INTRON spri	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1296871	2L_1296871_DEL [dm3] 2L_1296871_DEL [dm6]	GAC	G	4.582e^-4	0.974	DOWNSTREAM robo3 INTERGENIC
3R	16348983	3R_16348983_INS [dm3] 3R_20523261_INS [dm6]	C	CTAAAAAATAGG...	4.588e^-4	0.974	INTERGENIC
2R	9268010	2R_9268010_SNP [dm3] 2R_13380505_SNP [dm6]	C	T	4.589e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	21960311	X_21960311_SNP [dm3] X_22558475_SNP [dm6]	G	C	4.590e^-4	0.974	INTERGENIC	transposable element FlyBase
3R	13647734	3R_13647734_SNP [dm3] 3R_17822012_SNP [dm6]	T	A	4.597e^-4	0.974	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	19154486	2R_19154486_SNP [dm3] 2R_23266963_SNP [dm6]	A	T	4.603e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22764216	3R_22764216_SNP [dm3] 3R_26938494_SNP [dm6]	T	C	4.604e^-4	0.974	SYNONYMOUS_CODING sda
2R	6999333	2R_6999333_SNP [dm3] 2R_11111828_SNP [dm6]	T	A	4.613e^-4	0.974	INTRON luna	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3R	3745682	3R_3745682_SNP [dm3] 3R_7919960_SNP [dm6]	C	A	4.623e^-4	0.974	NON_SYNONYMOUS_CODING CG10445 UPSTREAM lds	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
X	16609668	X_16609668_SNP [dm3] X_16715635_SNP [dm6]	T	C	4.632e^-4	0.974	INTRON CG34325
2L	9192045	2L_9192045_SNP [dm3] 2L_9192045_SNP [dm6]	A	C	4.642e^-4	0.974	INTRON tai
2R	10809177	2R_10809177_SNP [dm3] 2R_14921672_SNP [dm6]	G	A	4.643e^-4	0.974	INTRON CG10249
2R	11139886	2R_11139886_SNP [dm3] 2R_15252381_SNP [dm6]	C	T	4.645e^-4	0.974	UPSTREAM scb INTRON scb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
X	22065081	X_22065081_SNP [dm3] X_22663245_SNP [dm6]	A	G	4.645e^-4	0.974	INTRON CR44997
2L	6278651	2L_6278651_INS [dm3] 2L_6278651_INS [dm6]	T	TTCT	4.646e^-4	0.974	INTRON Ddr
3L	4373524	3L_4373524_SNP [dm3] 3L_4373524_SNP [dm6]	T	A	4.647e^-4	0.974	INTRON DopEcR
2L	17536447	2L_17536447_SNP [dm3] 2L_17536447_SNP [dm6]	A	G	4.649e^-4	0.974	INTERGENIC
3R	20329263	3R_20329263_SNP [dm3] 3R_24503541_SNP [dm6]	A	G	4.652e^-4	0.974	INTERGENIC
X	13006774	X_13006774_SNP [dm3] X_13112741_SNP [dm6]	C	A	4.657e^-4	0.974	UPSTREAM CG43313 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	10792123	2L_10792123_SNP [dm3] 2L_10792123_SNP [dm6]	C	A	4.664e^-4	0.974	DOWNSTREAM CG31870 INTRON CG31869
X	12399013	X_12399013_SNP [dm3] X_12504980_SNP [dm6]	A	G	4.667e^-4	0.974	INTRON CG2556
3L	20494826	3L_20494826_SNP [dm3] 3L_20501726_SNP [dm6]	G	T	4.672e^-4	0.974	DOWNSTREAM CG18281 INTRON CG32425	transposable element FlyBase
3R	25162129	3R_25162129_DEL [dm3] 3R_29336407_DEL [dm6]	CACTACCACTCCAAGTTCCC...	C	4.673e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	19141567	3R_19141567_SNP [dm3] 3R_23315845_SNP [dm6]	A	T	4.689e^-4	0.976	INTRON pnt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
3R	12810836	3R_12810836_SNP [dm3] 3R_16985114_SNP [dm6]	A	C	4.696e^-4	0.976	INTRON CG18622
3R	5417809	3R_5417809_SNP [dm3] 3R_9592087_SNP [dm6]	A	T	4.699e^-4	0.976	UTR_5_PRIME CG8312	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	25573993	3R_25573993_SNP [dm3] 3R_29748271_SNP [dm6]	G	C	4.717e^-4	0.977	SYNONYMOUS_CODING ATPsyn-gamma UPSTREAM yata DOWNSTREAM IntS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1321516	3L_1321516_SNP [dm3] 3L_1321516_SNP [dm6]	A	G	4.720e^-4	0.977	DOWNSTREAM CG9184 INTRON Myo61F
2R	13562596	2R_13562596_SNP [dm3] 2R_17675091_SNP [dm6]	A	G	4.722e^-4	0.977	SYNONYMOUS_CODING Sema-1b	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	18576201	3L_18576201_SNP [dm3] 3L_18583101_SNP [dm6]	C	A	4.723e^-4	0.977	UPSTREAM CR45435 INTERGENIC
3R	20333556	3R_20333556_SNP [dm3] 3R_24507834_SNP [dm6]	T	A	4.735e^-4	0.977	INTERGENIC
3R	27228314	3R_27228314_SNP [dm3] 3R_31402592_SNP [dm6]	T	C	4.737e^-4	0.977	DOWNSTREAM Gcn2 INTRON CG11337	TF binding site mE1_TFBS_cad
X	21465418	X_21465418_SNP [dm3] X_21594391_SNP [dm6]	G	A	4.749e^-4	0.977	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	20253250	2L_20253250_MNP [dm3] 2L_20253250_MNP [dm6]	TAT	AGA	4.751e^-4	0.977	DOWNSTREAM CR40465 INTERGENIC
3R	25528686	3R_25528686_SNP [dm3] 3R_29702964_SNP [dm6]	A	G	4.754e^-4	0.977	INTERGENIC
2L	7091480	2L_7091480_SNP [dm3] 2L_7091480_SNP [dm6]	G	T	4.757e^-4	0.977	INTERGENIC
3L	3573243	3L_3573243_SNP [dm3] 3L_3573243_SNP [dm6]	T	G	4.762e^-4	0.977	INTRON Eip63E
X	13502998	X_13502998_SNP [dm3] X_13608965_SNP [dm6]	T	A	4.766e^-4	0.977	UTR_3_PRIME CG11178 DOWNSTREAM Ndc80
3R	20329265	3R_20329265_SNP [dm3] 3R_24503543_SNP [dm6]	C	A	4.806e^-4	0.984	INTERGENIC
3R	26690928	3R_26690928_SNP [dm3] 3R_30865206_SNP [dm6]	G	C	4.820e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	16804465	2L_16804465_SNP [dm3] 2L_16804465_SNP [dm6]	A	T	4.822e^-4	0.985	UPSTREAM CG13272 & 1 other INTRON CG13280
X	8716469	X_8716469_DEL [dm3] X_8822436_DEL [dm6]	AT	A	4.828e^-4	0.985	INTERGENIC
2L	5114144	2L_5114144_SNP [dm3] 2L_5114144_SNP [dm6]	T	G	4.842e^-4	0.987	INTRON Msp300
2L	20253225	2L_20253225_SNP [dm3] 2L_20253225_SNP [dm6]	A	T	4.851e^-4	0.987	DOWNSTREAM CR40465 INTERGENIC
2R	14170739	2R_14170739_SNP [dm3] 2R_18283234_SNP [dm6]	A	G	4.855e^-4	0.987	SYNONYMOUS_CODING sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8703572	X_8703572_SNP [dm3] X_8809539_SNP [dm6]	G	A	4.861e^-4	0.987	INTERGENIC
X	16861294	X_16861294_SNP [dm3] X_16967261_SNP [dm6]	A	G	4.862e^-4	0.987	INTRON CG9086	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3L	8363420	3L_8363420_SNP [dm3] 3L_8370320_SNP [dm6]	G	C	4.874e^-4	0.987	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	9199245	2R_9199245_SNP [dm3] 2R_13311740_SNP [dm6]	G	A	4.874e^-4	0.987	INTERGENIC
2R	20347486	2R_20347486_SNP [dm3] 2R_24459963_SNP [dm6]	G	T	4.885e^-4	0.988	INTRON CG13579
X	19617846	X_19617846_SNP [dm3] X_19723813_SNP [dm6]	T	C	4.887e^-4	0.988	SYNONYMOUS_CODING CG12531
2R	6857861	2R_6857861_SNP [dm3] 2R_10970356_SNP [dm6]	T	C	4.901e^-4	0.988	INTERGENIC
3R	6842426	3R_6842426_SNP [dm3] 3R_11016704_SNP [dm6]	T	C	4.902e^-4	0.988	INTRON CG34114
3L	9301042	3L_9301042_SNP [dm3] 3L_9307942_SNP [dm6]	G	T	4.905e^-4	0.988	INTERGENIC
2R	7314956	2R_7314956_SNP [dm3] 2R_11427451_SNP [dm6]	T	C	4.926e^-4	0.989	START_LOST Drip INTRON Drip
3L	5738955	3L_5738955_SNP [dm3] 3L_5745855_SNP [dm6]	A	C	4.926e^-4	0.989	UTR_3_PRIME sif INTRON sif
X	21890884	X_21890884_SNP [dm3] X_22489048_SNP [dm6]	T	A	4.932e^-4	0.989	INTRON l_1_G0196 EXON CR43493	transposable element FlyBase
3R	24540266	3R_24540266_DEL [dm3] 3R_28714544_DEL [dm6]	TCTCCACTCGGAGT...	T	4.953e^-4	0.989	INTRON htt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	11141965	2R_11141965_SNP [dm3] 2R_15254460_SNP [dm6]	C	T	4.955e^-4	0.989	SYNONYMOUS_CODING scb	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	9695454	3L_9695454_SNP [dm3] 3L_9702354_SNP [dm6]	C	T	4.956e^-4	0.989	SYNONYMOUS_CODING CG6761	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18325389	2L_18325389_SNP [dm3] 2L_18325389_SNP [dm6]	C	A	4.961e^-4	0.989	INTRON Fas3
2R	10559279	2R_10559279_SNP [dm3] 2R_14671774_SNP [dm6]	C	A	4.962e^-4	0.989	UTR_3_PRIME mspo DOWNSTREAM mspo & 1 other
3L	2036760	3L_2036760_SNP [dm3] 3L_2036760_SNP [dm6]	C	G	4.975e^-4	0.989	DOWNSTREAM CG42355 INTERGENIC
3R	18392548	3R_18392548_SNP [dm3] 3R_22566826_SNP [dm6]	A	G	4.976e^-4	0.989	INTERGENIC
3L	7151653	3L_7151653_SNP [dm3] 3L_7158553_SNP [dm6]	A	G	4.977e^-4	0.989	NON_SYNONYMOUS_CODING CG8620 DOWNSTREAM Dscam2 INTRON CG8620
3R	23672850	3R_23672850_SNP [dm3] 3R_27847128_SNP [dm6]	A	G	4.979e^-4	0.989	SPLICE_SITE_REGION Or98a INTRON CG34353 & 1 other
3R	3776753	3R_3776753_SNP [dm3] 3R_7951031_SNP [dm6]	C	A	4.986e^-4	0.989	INTRON dsx
2R	3591098	2R_3591098_SNP [dm3] 2R_7703593_SNP [dm6]	C	T	4.990e^-4	0.989	UTR_3_PRIME CG34216 DOWNSTREAM CG30493
X	7639946	X_7639946_INS [dm3] X_7745913_INS [dm6]	C	CTTGTTTGTGTGTGTGC...	4.996e^-4	0.989	INTERGENIC
2L	7758095	2L_7758095_SNP [dm3] 2L_7758095_SNP [dm6]	A	C	5.008e^-4	0.989	INTRON CG7196
2R	7779905	2R_7779905_SNP [dm3] 2R_11892400_SNP [dm6]	G	A	5.021e^-4	0.989	UPSTREAM snoRNA:Me28S-A1322 INTRON Ef1alpha48D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18367142	2R_18367142_SNP [dm3] 2R_22479637_SNP [dm6]	A	G	5.038e^-4	0.989	INTRON CG4752
2R	18990774	2R_18990774_SNP [dm3] 2R_23103251_SNP [dm6]	C	T	5.051e^-4	0.989	SYNONYMOUS_CODING Gr59c DOWNSTREAM Gr59d
3L	14076940	3L_14076940_SNP [dm3] 3L_14083840_SNP [dm6]	C	T	5.051e^-4	0.989	SYNONYMOUS_CODING CG8100 DOWNSTREAM btl
2R	9203477	2R_9203477_SNP [dm3] 2R_13315972_SNP [dm6]	A	T	5.060e^-4	0.989	INTERGENIC
3R	9243596	3R_9243596_SNP [dm3] 3R_13417874_SNP [dm6]	A	G	5.071e^-4	0.989	INTERGENIC
2R	6154838	2R_6154838_SNP [dm3] 2R_10267333_SNP [dm6]	A	G	5.089e^-4	0.989	INTRON CG12910	TF binding site BDTNP1_TFBS_da
3L	3797253	3L_3797253_SNP [dm3] 3L_3797253_SNP [dm6]	A	T	5.098e^-4	0.989	INTRON CG32264
3L	3797255	3L_3797255_SNP [dm3] 3L_3797255_SNP [dm6]	T	G	5.098e^-4	0.989	INTRON CG32264
X	14371581	X_14371581_SNP [dm3] X_14477548_SNP [dm6]	A	C	5.099e^-4	0.989	INTRON CG9411
2L	1670244	2L_1670244_INS [dm3] 2L_1670244_INS [dm6]	T	TT	5.100e^-4	0.989	INTRON chinmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	12389845	3L_12389845_SNP [dm3] 3L_12396745_SNP [dm6]	C	T	5.105e^-4	0.989	SPLICE_SITE_REGION Obp69a INTRON CG32104 & 1 other	TF binding site BDTNP1_TFBS_twi
2L	6576270	2L_6576270_SNP [dm3] 2L_6576270_SNP [dm6]	A	T	5.120e^-4	0.989	SYNONYMOUS_CODING CG11319
3R	25648320	3R_25648320_SNP [dm3] 3R_29822598_SNP [dm6]	G	A	5.120e^-4	0.989	NON_SYNONYMOUS_CODING neo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9488596	3R_9488596_SNP [dm3] 3R_13662874_SNP [dm6]	C	G	5.126e^-4	0.989	INTRON B52	TF binding site BDTNP1_TFBS_dl
3L	18564319	3L_18564319_SNP [dm3] 3L_18571219_SNP [dm6]	G	A	5.127e^-4	0.989	INTRON AstC-R1
2R	20219707	2R_20219707_SNP [dm3] 2R_24332184_SNP [dm6]	T	A	5.129e^-4	0.989	UTR_3_PRIME slbo	TF binding site mE1_TFBS_cad
X	13008069	X_13008069_SNP [dm3] X_13114036_SNP [dm6]	A	T	5.131e^-4	0.989	INTERGENIC
2R	9219150	2R_9219150_SNP [dm3] 2R_13331645_SNP [dm6]	G	A	5.159e^-4	0.989	INTRON CR44206	TF binding site mE1_TFBS_cad
X	7622930	X_7622930_SNP [dm3] X_7728897_SNP [dm6]	T	C	5.162e^-4	0.989	UTR_5_PRIME CG12155 UPSTREAM NELF-B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	20289134	X_20289134_DEL [dm3] X_20418107_DEL [dm6]	TTTCT	T	5.165e^-4	0.989	UTR_3_PRIME Obp19c DOWNSTREAM Obp19b	TF binding site mE1_TFBS_cad
3R	19491798	3R_19491798_SNP [dm3] 3R_23666076_SNP [dm6]	G	C	5.175e^-4	0.989	INTRON CG31145	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	25574053	3R_25574053_SNP [dm3] 3R_29748331_SNP [dm6]	A	G	5.179e^-4	0.989	SYNONYMOUS_CODING ATPsyn-gamma UPSTREAM yata DOWNSTREAM IntS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	15714538	2R_15714538_SNP [dm3] 2R_19827033_SNP [dm6]	A	G	5.182e^-4	0.989	SYNONYMOUS_CODING Toll-7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9890776	2R_9890776_SNP [dm3] 2R_14003271_SNP [dm6]	C	T	5.192e^-4	0.989	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	20523337	3L_20523337_SNP [dm3] 3L_20530237_SNP [dm6]	T	C	5.195e^-4	0.989	INTRON Rcd2	TF binding site BDTNP1_TFBS_dl
3R	24505711	3R_24505711_SNP [dm3] 3R_28679989_SNP [dm6]	C	A	5.198e^-4	0.989	INTRON CG9990
3L	9815937	3L_9815937_SNP [dm3] 3L_9822837_SNP [dm6]	C	G	5.200e^-4	0.989	DOWNSTREAM Ilp5 INTRON CG43897
2R	13122937	2R_13122937_SNP [dm3] 2R_17235432_SNP [dm6]	G	A	5.207e^-4	0.989	INTRON mbl	TF binding site mE1_TFBS_HSA
2R	17665996	2R_17665996_SNP [dm3] 2R_21778491_SNP [dm6]	T	G	5.208e^-4	0.989	INTERGENIC
3L	10692795	3L_10692795_SNP [dm3] 3L_10699695_SNP [dm6]	A	T	5.210e^-4	0.989	INTERGENIC
2R	10988226	2R_10988226_SNP [dm3] 2R_15100721_SNP [dm6]	T	A	5.214e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10988230	2R_10988230_SNP [dm3] 2R_15100725_SNP [dm6]	T	C	5.214e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7445133	3L_7445133_SNP [dm3] 3L_7452033_SNP [dm6]	C	T	5.232e^-4	0.989	SYNONYMOUS_CODING CG33278 INTRON CG42458
X	16145617	X_16145617_SNP [dm3] X_16251584_SNP [dm6]	G	A	5.235e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12578283	2R_12578283_SNP [dm3] 2R_16690778_SNP [dm6]	G	T	5.242e^-4	0.989	UPSTREAM CG5210 INTRON CG30463
2R	16274530	2R_16274530_SNP [dm3] 2R_20387025_SNP [dm6]	C	T	5.250e^-4	0.989	INTERGENIC
3L	6758127	3L_6758127_SNP [dm3] 3L_6765027_SNP [dm6]	G	A	5.252e^-4	0.989	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Stat92E
X	15191193	X_15191193_SNP [dm3] X_15297160_SNP [dm6]	A	G	5.253e^-4	0.989	UTR_3_PRIME CG5877 UPSTREAM gce DOWNSTREAM CR44429 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	13664436	X_13664436_SNP [dm3] X_13770403_SNP [dm6]	T	A	5.270e^-4	0.989	INTRON rdgB
2R	9228143	2R_9228143_SNP [dm3] 2R_13340638_SNP [dm6]	T	G	5.300e^-4	0.989	INTRON CR44206	TF binding site mE1_TFBS_chinmo
3L	7151647	3L_7151647_SNP [dm3] 3L_7158547_SNP [dm6]	A	G	5.300e^-4	0.989	NON_SYNONYMOUS_CODING CG8620 DOWNSTREAM Dscam2 INTRON CG8620
2R	14278136	2R_14278136_SNP [dm3] 2R_18390631_SNP [dm6]	T	A	5.303e^-4	0.989	UPSTREAM CG15068 DOWNSTREAM CG15065 INTERGENIC
3L	7706952	3L_7706952_SNP [dm3] 3L_7713852_SNP [dm6]	C	A	5.309e^-4	0.989	UPSTREAM Ank2 INTRON CG32373 & 1 other	TF binding site BDTNP1_TFBS_dl
X	2349628	X_2349628_SNP [dm3] X_2455595_SNP [dm6]	A	G	5.310e^-4	0.989	INTRON boi
3R	25563221	3R_25563221_SNP [dm3] 3R_29737499_SNP [dm6]	T	A	5.320e^-4	0.989	SYNONYMOUS_CODING CG7598 UPSTREAM CG7601 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	292650	3R_292650_INS [dm3] 3R_4466928_INS [dm6]	C	CT	5.349e^-4	0.989	INTRON CG31523
2L	917762	2L_917762_SNP [dm3] 2L_917762_SNP [dm6]	A	G	5.359e^-4	0.989	UTR_3_PRIME GluRIIC
X	16019363	X_16019363_SNP [dm3] X_16125330_SNP [dm6]	T	C	5.364e^-4	0.989	UPSTREAM disco-r INTRON disco-r
3R	13558709	3R_13558709_SNP [dm3] 3R_17732987_SNP [dm6]	A	G	5.372e^-4	0.989	UTR_3_PRIME Lgr1 UPSTREAM CG14321	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
X	2561759	X_2561759_SNP [dm3] X_2667726_SNP [dm6]	G	A	5.375e^-4	0.989	UPSTREAM sgg INTRON sgg
3R	23774661	3R_23774661_SNP [dm3] 3R_27948939_SNP [dm6]	G	A	5.380e^-4	0.989	UPSTREAM mfrn INTRON Gp93	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3L	1375419	3L_1375419_SNP [dm3] 3L_1375419_SNP [dm6]	T	C	5.385e^-4	0.989	INTRON Ptp61F & 1 other

By genomic position
Variant impact
Gene name

Wolbachi_Breadth_Cov phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results