DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.580e^-17)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	1.163e-07

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	125.8522	3.3126e-29
In_2L_t	8.3456	0.0154

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2653 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	14564909	3L_14564909_SNP [dm3] 3L_14571809_SNP [dm6]	T	A	6.772e^-7	0.442	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14579045	3L_14579045_SNP [dm3] 3L_14585945_SNP [dm6]	G	A	8.700e^-7	0.442	INTRON HGTX	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	14583496	3L_14583496_DEL [dm3] 3L_14590396_DEL [dm6]	ATTTAAACATTACATCTCCC...	A	8.719e^-7	0.442	INTRON HGTX
3L	14563834	3L_14563834_SNP [dm3] 3L_14570734_SNP [dm6]	C	T	9.428e^-7	0.442	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	14450649	2R_14450649_SNP [dm3] 2R_18563144_SNP [dm6]	T	C	1.243e^-6	0.448	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18570219	3L_18570219_SNP [dm3] 3L_18577119_SNP [dm6]	C	A	1.464e^-6	0.448	DOWNSTREAM AstC-R1 INTERGENIC
2R	18437424	2R_18437424_SNP [dm3] 2R_22549919_SNP [dm6]	T	C	2.155e^-6	0.448	UPSTREAM CG6018 INTRON px
2R	14450509	2R_14450509_SNP [dm3] 2R_18563004_SNP [dm6]	T	A	2.198e^-6	0.448	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5045245	3L_5045245_SNP [dm3] 3L_5045245_SNP [dm6]	T	A	2.206e^-6	0.448	INTRON Con
2L	7095190	2L_7095190_SNP [dm3] 2L_7095190_SNP [dm6]	T	A	2.389e^-6	0.448	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14563239	3L_14563239_SNP [dm3] 3L_14570139_SNP [dm6]	G	C	3.002e^-6	0.467	INTERGENIC
2L	8984668	2L_8984668_DEL [dm3] 2L_8984668_DEL [dm6]	GTTTG	G	3.150e^-6	0.467	INTRON CG13101	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	17459598	2L_17459598_DEL [dm3] 2L_17459598_DEL [dm6]	CTAAGCTC	C	3.351e^-6	0.467	UTR_3_PRIME BicD DOWNSTREAM BicD & 1 other INTRAGENIC BicD INTERGENIC
3L	5733948	3L_5733948_SNP [dm3] 3L_5740848_SNP [dm6]	C	G	3.489e^-6	0.467	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_chinmo
3R	1293243	3R_1293243_SNP [dm3] 3R_5467521_SNP [dm6]	T	A	3.898e^-6	0.487	UPSTREAM CG12162 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8985091	2L_8985091_SNP [dm3] 2L_8985091_SNP [dm6]	A	C	4.436e^-6	0.511	UPSTREAM CG13101 DOWNSTREAM rost INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	13108796	3L_13108796_SNP [dm3] 3L_13115696_SNP [dm6]	T	C	4.632e^-6	0.511	SYNONYMOUS_CODING trn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	19475727	2L_19475727_SNP [dm3] 2L_19475727_SNP [dm6]	A	G	5.695e^-6	0.54	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16928210	3L_16928210_INS [dm3] 3L_16935110_INS [dm6]	A	ATATA	5.699e^-6	0.54	INTRON CG11905	TF binding site mE1_TFBS_Trl
2R	18437368	2R_18437368_SNP [dm3] 2R_22549863_SNP [dm6]	C	T	5.754e^-6	0.54	UPSTREAM CG6018 INTRON px
2L	13618519	2L_13618519_SNP [dm3] 2L_13618519_SNP [dm6]	T	G	6.831e^-6	0.56	INTRON kuz
2L	17938580	2L_17938580_SNP [dm3] 2L_17938580_SNP [dm6]	T	A	6.968e^-6	0.56	DOWNSTREAM CR44399 INTERGENIC
3L	17738862	3L_17738862_SNP [dm3] 3L_17745762_SNP [dm6]	G	C	8.913e^-6	0.56	NON_SYNONYMOUS_CODING CG6034 INTRON Ccn
X	4788228	X_4788228_SNP [dm3] X_4894195_SNP [dm6]	C	A	9.393e^-6	0.56	INTRON CG42594
3R	3705367	3R_3705367_SNP [dm3] 3R_7879645_SNP [dm6]	T	C	9.500e^-6	0.56	INTRON CG17816
3R	15622532	3R_15622532_SNP [dm3] 3R_19796810_SNP [dm6]	C	T	9.553e^-6	0.56	SYNONYMOUS_CODING bnl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_h mE1_TFBS_HSA
3L	14578991	3L_14578991_SNP [dm3] 3L_14585891_SNP [dm6]	T	A	9.645e^-6	0.56	INTRON HGTX	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
X	4105992	X_4105992_SNP [dm3] X_4211959_SNP [dm6]	A	T	9.738e^-6	0.56	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2783843	2L_2783843_SNP [dm3] 2L_2783843_SNP [dm6]	A	G	9.842e^-6	0.56	UTR_3_PRIME Syt1 INTRON Syt1
3L	5733936	3L_5733936_SNP [dm3] 3L_5740836_SNP [dm6]	A	G	1.073e^-5	0.56	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_chinmo
X	15533774	X_15533774_SNP [dm3] X_15639741_SNP [dm6]	T	C	1.077e^-5	0.56	INTERGENIC
X	4106074	X_4106074_SNP [dm3] X_4212041_SNP [dm6]	C	T	1.086e^-5	0.56	UPSTREAM CG43288 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26879883	3R_26879883_SNP [dm3] 3R_31054161_SNP [dm6]	G	A	1.091e^-5	0.56	UTR_3_PRIME dco UPSTREAM l_3_03670	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	18392051	3R_18392051_SNP [dm3] 3R_22566329_SNP [dm6]	G	A	1.124e^-5	0.56	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	10344841	X_10344841_SNP [dm3] X_10450808_SNP [dm6]	A	T	1.131e^-5	0.56	INTRON CG32683
2R	11000178	2R_11000178_SNP [dm3] 2R_15112673_SNP [dm6]	C	A	1.134e^-5	0.56	INTERGENIC
3R	15759973	3R_15759973_SNP [dm3] 3R_19934251_SNP [dm6]	T	G	1.149e^-5	0.56	SYNONYMOUS_CODING mira INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	5723842	2R_5723842_SNP [dm3] 2R_9836337_SNP [dm6]	C	T	1.155e^-5	0.56	UPSTREAM CG1663 INTRON hebe	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	12364551	2R_12364551_SNP [dm3] 2R_16477046_SNP [dm6]	A	C	1.217e^-5	0.56	INTERGENIC
2L	16686295	2L_16686295_DEL [dm3] 2L_16686295_DEL [dm6]	TTATT	T	1.236e^-5	0.56	INTRON grp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	5626868	X_5626868_SNP [dm3] X_5732835_SNP [dm6]	G	A	1.322e^-5	0.56	NON_SYNONYMOUS_CODING CG15773 INTRON CG32758	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14579022	3L_14579022_SNP [dm3] 3L_14585922_SNP [dm6]	C	A	1.357e^-5	0.56	INTRON HGTX	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3R	14840861	3R_14840861_SNP [dm3] 3R_19015139_SNP [dm6]	C	T	1.440e^-5	0.56	INTRON gukh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	1268770	3R_1268770_SNP [dm3] 3R_5443048_SNP [dm6]	A	G	1.454e^-5	0.56	DOWNSTREAM CG14669 INTRON CG14669
3L	8776574	3L_8776574_SNP [dm3] 3L_8783474_SNP [dm6]	G	A	1.530e^-5	0.56	INTRON Fhos
3L	17750316	3L_17750316_SNP [dm3] 3L_17757216_SNP [dm6]	T	C	1.549e^-5	0.56	UPSTREAM Msi & 1 other INTRON Adgf-A & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	16620035	2R_16620035_SNP [dm3] 2R_20732530_SNP [dm6]	G	T	1.559e^-5	0.56	INTRON dpr
X	4106022	X_4106022_SNP [dm3] X_4211989_SNP [dm6]	C	T	1.582e^-5	0.56	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14585839	3L_14585839_SNP [dm3] 3L_14592739_SNP [dm6]	C	A	1.600e^-5	0.56	INTRON HGTX	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	13702977	2L_13702977_SNP [dm3] 2L_13702977_SNP [dm6]	T	C	1.624e^-5	0.56	INTRON CG31814
3R	1301780	3R_1301780_SNP [dm3] 3R_5476058_SNP [dm6]	T	G	1.743e^-5	0.56	INTRON Hcs
2L	1669300	2L_1669300_SNP [dm3] 2L_1669300_SNP [dm6]	G	C	1.760e^-5	0.56	INTRON chinmo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2L	7066058	2L_7066058_SNP [dm3] 2L_7066058_SNP [dm6]	C	T	1.848e^-5	0.56	UPSTREAM Nuf2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	11000136	2R_11000136_SNP [dm3] 2R_15112631_SNP [dm6]	C	T	1.869e^-5	0.56	INTERGENIC
3L	18564319	3L_18564319_SNP [dm3] 3L_18571219_SNP [dm6]	G	A	1.893e^-5	0.56	INTRON AstC-R1
2L	3377522	2L_3377522_SNP [dm3] 2L_3377522_SNP [dm6]	G	A	1.897e^-5	0.56	SYNONYMOUS_CODING Ptpa UPSTREAM CG9662	TF binding site mE1_TFBS_sens
2L	6278651	2L_6278651_INS [dm3] 2L_6278651_INS [dm6]	T	TTCT	1.921e^-5	0.56	INTRON Ddr
2R	12060109	2R_12060109_SNP [dm3] 2R_16172604_SNP [dm6]	T	A	1.943e^-5	0.56	INTRON Ptp52F	TF binding site mE1_TFBS_cad
2R	2420845	2R_2420845_SNP [dm3] 2R_6533340_SNP [dm6]	C	T	1.977e^-5	0.56	INTRON jing EXON CR43905	TF binding site mE1_TFBS_sens
3L	3497519	3L_3497519_SNP [dm3] 3L_3497519_SNP [dm6]	C	G	1.992e^-5	0.56	INTRON CG42324
3L	18564571	3L_18564571_SNP [dm3] 3L_18571471_SNP [dm6]	T	G	2.001e^-5	0.56	INTRON AstC-R1
3L	14087552	3L_14087552_SNP [dm3] 3L_14094452_SNP [dm6]	G	T	2.011e^-5	0.56	DOWNSTREAM Fbp1 INTERGENIC
2L	19366615	2L_19366615_INS [dm3] 2L_19366615_INS [dm6]	T	TTACTTTGCTT...	2.062e^-5	0.56	INTERGENIC
2L	8984195	2L_8984195_SNP [dm3] 2L_8984195_SNP [dm6]	C	A	2.085e^-5	0.56	INTRON CG13101	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18749747	3L_18749747_INS [dm3] 3L_18756647_INS [dm6]	A	AGCAA	2.104e^-5	0.56	INTRON ftz-f1	TF binding site BDTNP1_TFBS_dl
2R	12060139	2R_12060139_SNP [dm3] 2R_16172634_SNP [dm6]	T	C	2.112e^-5	0.56	SPLICE_SITE_REGION Ptp52F INTRON Ptp52F	TF binding site mE1_TFBS_cad
X	4106013	X_4106013_MNP [dm3] X_4211980_MNP [dm6]	GAT	ATA	2.113e^-5	0.56	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26936509	3R_26936509_SNP [dm3] 3R_31110787_SNP [dm6]	A	G	2.122e^-5	0.56	INTERGENIC
3L	4539211	3L_4539211_SNP [dm3] 3L_4539211_SNP [dm6]	C	T	2.160e^-5	0.56	UTR_3_PRIME CG11353 DOWNSTREAM CG32243	TF binding site BDTNP1_TFBS_twi
2L	8984194	2L_8984194_SNP [dm3] 2L_8984194_SNP [dm6]	A	C	2.164e^-5	0.56	INTRON CG13101	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14450618	2R_14450618_SNP [dm3] 2R_18563113_SNP [dm6]	T	G	2.169e^-5	0.56	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25557404	3R_25557404_SNP [dm3] 3R_29731682_SNP [dm6]	A	G	2.239e^-5	0.56	SYNONYMOUS_CODING Kul UTR_3_PRIME Kul	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	3892265	2R_3892265_SNP [dm3] 2R_8004760_SNP [dm6]	G	C	2.242e^-5	0.56	UPSTREAM Odc1 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	19163709	X_19163709_SNP [dm3] X_19269676_SNP [dm6]	A	T	2.268e^-5	0.56	UPSTREAM CG8010 INTRON Vav	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
2L	8984200	2L_8984200_SNP [dm3] 2L_8984200_SNP [dm6]	A	T	2.304e^-5	0.56	INTRON CG13101	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8984201	2L_8984201_SNP [dm3] 2L_8984201_SNP [dm6]	G	C	2.304e^-5	0.56	INTRON CG13101	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19366642	2L_19366642_SNP [dm3] 2L_19366642_SNP [dm6]	C	A	2.313e^-5	0.56	INTERGENIC
2L	17548367	2L_17548367_SNP [dm3] 2L_17548367_SNP [dm6]	T	C	2.338e^-5	0.56	DOWNSTREAM CR45697 INTERGENIC
X	4105988	X_4105988_SNP [dm3] X_4211955_SNP [dm6]	T	A	2.373e^-5	0.56	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14585778	3L_14585778_SNP [dm3] 3L_14592678_SNP [dm6]	T	A	2.389e^-5	0.56	INTRON HGTX	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	8985102	2L_8985102_SNP [dm3] 2L_8985102_SNP [dm6]	A	G	2.466e^-5	0.565	UPSTREAM CG13101 DOWNSTREAM rost INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	3377666	2L_3377666_SNP [dm3] 2L_3377666_SNP [dm6]	G	A	2.559e^-5	0.565	SYNONYMOUS_CODING Ptpa UPSTREAM CG9662	TF binding site mE1_TFBS_sens
2R	12060103	2R_12060103_DEL [dm3] 2R_16172598_DEL [dm6]	TT	A	2.576e^-5	0.565	INTRON Ptp52F	TF binding site mE1_TFBS_cad
3L	17828701	3L_17828701_SNP [dm3] 3L_17835601_SNP [dm6]	C	A	2.623e^-5	0.565	UPSTREAM CG32189 INTRON Grd
2L	1994272	2L_1994272_SNP [dm3] 2L_1994272_SNP [dm6]	T	G	2.700e^-5	0.565	INTERGENIC
3L	13174586	3L_13174586_SNP [dm3] 3L_13181486_SNP [dm6]	G	T	2.720e^-5	0.565	INTERGENIC
3L	4539306	3L_4539306_SNP [dm3] 3L_4539306_SNP [dm6]	T	C	2.726e^-5	0.565	UTR_3_PRIME CG32243 DOWNSTREAM CG11353	TF binding site BDTNP1_TFBS_twi
3L	4539307	3L_4539307_SNP [dm3] 3L_4539307_SNP [dm6]	G	A	2.726e^-5	0.565	UTR_3_PRIME CG32243 DOWNSTREAM CG11353	TF binding site BDTNP1_TFBS_twi
3L	18572828	3L_18572828_SNP [dm3] 3L_18579728_SNP [dm6]	G	A	2.778e^-5	0.565	INTERGENIC
3L	14581509	3L_14581509_SNP [dm3] 3L_14588409_SNP [dm6]	A	G	2.805e^-5	0.565	INTRON HGTX
3L	14588274	3L_14588274_SNP [dm3] 3L_14595174_SNP [dm6]	C	T	2.876e^-5	0.565	INTRON HGTX	TF binding site mE1_TFBS_cnc
2R	9886469	2R_9886469_SNP [dm3] 2R_13998964_SNP [dm6]	T	C	2.895e^-5	0.565	INTRON mam	TF binding site BDTNP1_TFBS_dl
3L	9302714	3L_9302714_SNP [dm3] 3L_9309614_SNP [dm6]	C	T	2.925e^-5	0.565	INTERGENIC
3L	4539325	3L_4539325_INS [dm3] 3L_4539325_INS [dm6]	A	ACAAATA	2.937e^-5	0.565	UTR_3_PRIME CG32243 DOWNSTREAM CG11353	TF binding site BDTNP1_TFBS_twi
3R	20786688	3R_20786688_SNP [dm3] 3R_24960966_SNP [dm6]	G	C	2.987e^-5	0.565	INTERGENIC
3L	13174580	3L_13174580_SNP [dm3] 3L_13181480_SNP [dm6]	A	T	2.989e^-5	0.565	INTERGENIC
3R	25267690	3R_25267690_SNP [dm3] 3R_29441968_SNP [dm6]	A	G	2.992e^-5	0.565	INTRON Ptp99A
X	17081741	X_17081741_SNP [dm3] X_17187708_SNP [dm6]	G	A	2.994e^-5	0.565	INTRON baz
2L	17548365	2L_17548365_SNP [dm3] 2L_17548365_SNP [dm6]	A	T	3.028e^-5	0.565	DOWNSTREAM CR45697 INTERGENIC
3L	10823998	3L_10823998_SNP [dm3] 3L_10830898_SNP [dm6]	G	A	3.065e^-5	0.565	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	24581090	3R_24581090_SNP [dm3] 3R_28755368_SNP [dm6]	A	T	3.071e^-5	0.565	DOWNSTREAM CG9997 INTERGENIC
X	11903992	X_11903992_SNP [dm3] X_12009959_SNP [dm6]	A	C	3.089e^-5	0.565	DOWNSTREAM CG1492 & 1 other INTERGENIC
3L	9658273	3L_9658273_SNP [dm3] 3L_9665173_SNP [dm6]	T	G	3.114e^-5	0.565	INTRON fry
3R	26044998	3R_26044998_SNP [dm3] 3R_30219276_SNP [dm6]	C	T	3.134e^-5	0.565	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	17066321	3L_17066321_SNP [dm3] 3L_17073221_SNP [dm6]	C	A	3.194e^-5	0.571	DOWNSTREAM Rbp6 INTRON Rbp6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	15216542	3R_15216542_SNP [dm3] 3R_19390820_SNP [dm6]	A	G	3.295e^-5	0.58	SPLICE_SITE_REGION CG18493 SYNONYMOUS_CODING CG18493 DOWNSTREAM CG3734 INTRON Ino80	TF binding site mE1_TFBS_sens
2R	19231315	2R_19231315_SNP [dm3] 2R_23343792_SNP [dm6]	G	C	3.335e^-5	0.58	NON_SYNONYMOUS_CODING CG3502
2L	19436371	2L_19436371_SNP [dm3] 2L_19436371_SNP [dm6]	A	G	3.357e^-5	0.58	SYNONYMOUS_CODING CG10237 DOWNSTREAM Rab9	TF binding site mE1_TFBS_chinmo
3R	1284830	3R_1284830_SNP [dm3] 3R_5459108_SNP [dm6]	T	C	3.368e^-5	0.58	UTR_3_PRIME PEK DOWNSTREAM CG14669
2R	6872699	2R_6872699_SNP [dm3] 2R_10985194_SNP [dm6]	A	T	3.472e^-5	0.584	INTRON luna
3L	18561702	3L_18561702_SNP [dm3] 3L_18568602_SNP [dm6]	G	A	3.490e^-5	0.584	INTRON AstC-R1
X	14238778	X_14238778_SNP [dm3] X_14344745_SNP [dm6]	G	A	3.555e^-5	0.584	INTRON dpr8
3L	989158	3L_989158_SNP [dm3] 3L_989158_SNP [dm6]	A	C	3.562e^-5	0.584	SYNONYMOUS_CODING Glut1 UTR_3_PRIME Glut1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	19476024	2L_19476024_SNP [dm3] 2L_19476024_SNP [dm6]	C	T	3.567e^-5	0.584	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19375193	2L_19375193_SNP [dm3] 2L_19375193_SNP [dm6]	C	A	3.588e^-5	0.584	INTERGENIC
3L	2750037	3L_2750037_SNP [dm3] 3L_2750037_SNP [dm6]	A	T	3.609e^-5	0.584	INTRON Mrtf
2R	19231333	2R_19231333_SNP [dm3] 2R_23343810_SNP [dm6]	G	T	3.699e^-5	0.593	NON_SYNONYMOUS_CODING CG3502
3L	991549	3L_991549_SNP [dm3] 3L_991549_SNP [dm6]	G	A	3.795e^-5	0.601	UTR_3_PRIME Glut1 DOWNSTREAM Glut1
2L	17548514	2L_17548514_SNP [dm3] 2L_17548514_SNP [dm6]	G	A	3.848e^-5	0.601	DOWNSTREAM CR45697 INTERGENIC
3L	2005780	3L_2005780_SNP [dm3] 3L_2005780_SNP [dm6]	C	A	3.848e^-5	0.601	UPSTREAM CG42841 INTERGENIC
2L	2344691	2L_2344691_SNP [dm3] 2L_2344691_SNP [dm6]	A	T	3.884e^-5	0.602	INTRON CG9967 & 1 other
2R	14442888	2R_14442888_SNP [dm3] 2R_18555383_SNP [dm6]	A	G	3.986e^-5	0.603	SYNONYMOUS_CODING GEFmeso UTR_3_PRIME GEFmeso	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	11730640	2R_11730640_SNP [dm3] 2R_15843135_SNP [dm6]	T	C	3.987e^-5	0.603	UTR_3_PRIME CG8249 DOWNSTREAM CG8249 INTRON tun	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	2807727	X_2807727_SNP [dm3] X_2913694_SNP [dm6]	A	G	4.003e^-5	0.603	INTRON kirre
3L	5434953	3L_5434953_SNP [dm3] 3L_5441853_SNP [dm6]	A	G	4.018e^-5	0.603	UTR_3_PRIME CG34391
2L	6029002	2L_6029002_DEL [dm3] 2L_6029002_DEL [dm6]	ACTTAGAC	A	4.098e^-5	0.605	INTRON CG9109
X	5712775	X_5712775_SNP [dm3] X_5818742_SNP [dm6]	T	C	4.133e^-5	0.605	UPSTREAM CG15765 INTRON CG15765	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20427833	X_20427833_SNP [dm3] X_20556806_SNP [dm6]	A	G	4.159e^-5	0.605	INTRON RunxB
2R	16170789	2R_16170789_SNP [dm3] 2R_20283284_SNP [dm6]	T	A	4.160e^-5	0.605	SYNONYMOUS_CODING CG16868	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	16466777	3L_16466777_SNP [dm3] 3L_16473677_SNP [dm6]	T	A	4.285e^-5	0.618	INTRON CG33158 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	7321588	2R_7321588_SNP [dm3] 2R_11434083_SNP [dm6]	A	T	4.318e^-5	0.618	UPSTREAM CR43771 INTERGENIC
3L	23097298	3L_23097298_SNP [dm3] 3L_23104198_SNP [dm6]	A	G	4.384e^-5	0.623	DOWNSTREAM CkIIalpha INTERGENIC	transposable element FlyBase
3R	8644015	3R_8644015_SNP [dm3] 3R_12818293_SNP [dm6]	A	G	4.473e^-5	0.631	INTERGENIC
X	11903950	X_11903950_SNP [dm3] X_12009917_SNP [dm6]	C	T	4.519e^-5	0.633	DOWNSTREAM CG1492 & 1 other INTERGENIC
3R	25887149	3R_25887149_SNP [dm3] 3R_30061427_SNP [dm6]	G	C	4.634e^-5	0.639	INTRON sima	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	7321583	2R_7321583_SNP [dm3] 2R_11434078_SNP [dm6]	C	T	4.635e^-5	0.639	UPSTREAM CR43771 INTERGENIC
2L	9777423	2L_9777423_SNP [dm3] 2L_9777423_SNP [dm6]	T	C	4.668e^-5	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	11000152	2R_11000152_SNP [dm3] 2R_15112647_SNP [dm6]	A	G	4.705e^-5	0.639	INTERGENIC
2L	16804504	2L_16804504_SNP [dm3] 2L_16804504_SNP [dm6]	A	C	4.741e^-5	0.64	UPSTREAM CG13272 & 1 other INTRON CG13280
X	4099086	X_4099086_SNP [dm3] X_4205053_SNP [dm6]	C	T	4.807e^-5	0.642	INTRON Fas2	TF binding site BDTNP1_TFBS_dl
X	3364286	X_3364286_SNP [dm3] X_3470253_SNP [dm6]	G	T	4.825e^-5	0.642	INTRON CR44999 & 1 other
3L	7573321	3L_7573321_DEL [dm3] 3L_7580221_DEL [dm6]	AG	A	4.959e^-5	0.651	INTERGENIC
2L	10782795	2L_10782795_SNP [dm3] 2L_10782795_SNP [dm6]	A	C	5.005e^-5	0.651	INTRON CG31869
3R	26784591	3R_26784591_SNP [dm3] 3R_30958869_SNP [dm6]	A	C	5.006e^-5	0.651	UPSTREAM CG15548 INTERGENIC
2L	2290598	2L_2290598_SNP [dm3] 2L_2290598_SNP [dm6]	A	G	5.080e^-5	0.651	SYNONYMOUS_CODING robl22E
3L	17828692	3L_17828692_SNP [dm3] 3L_17835592_SNP [dm6]	T	A	5.086e^-5	0.651	UPSTREAM CG32189 INTRON Grd
3L	18569531	3L_18569531_SNP [dm3] 3L_18576431_SNP [dm6]	A	G	5.118e^-5	0.651	DOWNSTREAM AstC-R1 INTERGENIC
3L	2005785	3L_2005785_SNP [dm3] 3L_2005785_SNP [dm6]	G	A	5.140e^-5	0.651	UPSTREAM CG42841 INTERGENIC
2R	8946386	2R_8946386_SNP [dm3] 2R_13058881_SNP [dm6]	T	A	5.183e^-5	0.652	INTRON Drl-2
X	5249634	X_5249634_SNP [dm3] X_5355601_SNP [dm6]	C	T	5.248e^-5	0.652	INTRON SK
3R	15759541	3R_15759541_SNP [dm3] 3R_19933819_SNP [dm6]	A	G	5.266e^-5	0.652	SYNONYMOUS_CODING mira INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	1120202	3R_1120202_SNP [dm3] 3R_5294480_SNP [dm6]	C	A	5.288e^-5	0.652	SYNONYMOUS_CODING mtd	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14130318	3L_14130318_SNP [dm3] 3L_14137218_SNP [dm6]	T	A	5.376e^-5	0.657	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da
3L	1996691	3L_1996691_SNP [dm3] 3L_1996691_SNP [dm6]	G	C	5.397e^-5	0.657	INTERGENIC
3L	1723074	3L_1723074_DEL [dm3] 3L_1723074_DEL [dm6]	TT	T	5.547e^-5	0.659	UTR_5_PRIME CG18171 INTRON drpr
3L	5895777	3L_5895777_SNP [dm3] 3L_5902677_SNP [dm6]	T	G	5.574e^-5	0.659	UPSTREAM QC DOWNSTREAM CG32413 INTERGENIC
3L	20458518	3L_20458518_SNP [dm3] 3L_20465418_SNP [dm6]	G	A	5.597e^-5	0.659	SYNONYMOUS_CODING CG42764 UPSTREAM CG5195
3L	12793387	3L_12793387_SNP [dm3] 3L_12800287_SNP [dm6]	A	G	5.643e^-5	0.659	INTRON Atg1
3R	18400396	3R_18400396_SNP [dm3] 3R_22574674_SNP [dm6]	T	A	5.699e^-5	0.659	INTRON CG33110
3R	445203	3R_445203_DEL [dm3] 3R_4619481_DEL [dm6]	AA	A	5.746e^-5	0.659	UTR_5_PRIME 5-HT2A INTRON 5-HT2A
2L	16804516	2L_16804516_SNP [dm3] 2L_16804516_SNP [dm6]	A	T	5.767e^-5	0.659	UPSTREAM CG13272 & 1 other INTRON CG13280
3L	2459393	3L_2459393_SNP [dm3] 3L_2459393_SNP [dm6]	C	G	5.823e^-5	0.659	INTRON CG45186
2L	7065936	2L_7065936_SNP [dm3] 2L_7065936_SNP [dm6]	C	A	5.833e^-5	0.659	UPSTREAM Nuf2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	9772737	2L_9772737_SNP [dm3] 2L_9772737_SNP [dm6]	G	A	5.845e^-5	0.659	SYNONYMOUS_CODING ppk16 DOWNSTREAM ppk11
3L	9301042	3L_9301042_SNP [dm3] 3L_9307942_SNP [dm6]	G	T	5.888e^-5	0.659	INTERGENIC
3L	3496821	3L_3496821_SNP [dm3] 3L_3496821_SNP [dm6]	G	T	5.888e^-5	0.659	INTRON CG42324
X	4259117	X_4259117_SNP [dm3] X_4365084_SNP [dm6]	T	C	5.919e^-5	0.659	UTR_3_PRIME norpA DOWNSTREAM mir-982 & 1 other
3R	1260224	3R_1260224_SNP [dm3] 3R_5434502_SNP [dm6]	C	G	5.922e^-5	0.659	INTRON CG14669
X	3421722	X_3421722_SNP [dm3] X_3527689_SNP [dm6]	C	T	5.967e^-5	0.659	INTRON CG32791
2L	8985236	2L_8985236_SNP [dm3] 2L_8985236_SNP [dm6]	A	G	5.978e^-5	0.659	UPSTREAM CG13101 DOWNSTREAM rost INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	21906092	X_21906092_SNP [dm3] X_22504256_SNP [dm6]	A	G	6.066e^-5	0.659	UTR_3_PRIME l_1_G0196 DOWNSTREAM l_1_G0196 INTRON l_1_G0196
3R	25267692	3R_25267692_DEL [dm3] 3R_29441970_DEL [dm6]	GG	G	6.123e^-5	0.659	INTRON Ptp99A
X	5712854	X_5712854_SNP [dm3] X_5818821_SNP [dm6]	T	C	6.126e^-5	0.659	UPSTREAM CG15765 INTRON CG15765	TF binding site BDTNP1_TFBS_dl
2L	8985370	2L_8985370_SNP [dm3] 2L_8985370_SNP [dm6]	A	T	6.138e^-5	0.659	UPSTREAM CG13101 DOWNSTREAM rost INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	17736454	3L_17736454_SNP [dm3] 3L_17743354_SNP [dm6]	T	C	6.180e^-5	0.659	DOWNSTREAM CG7460 INTRON Ccn
3R	10255645	3R_10255645_SNP [dm3] 3R_14429923_SNP [dm6]	C	T	6.247e^-5	0.659	INTRON cv-c	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26332516	3R_26332516_SNP [dm3] 3R_30506794_SNP [dm6]	T	C	6.304e^-5	0.659	SYNONYMOUS_CODING CG15539 UPSTREAM mir-4908
2L	8984978	2L_8984978_SNP [dm3] 2L_8984978_SNP [dm6]	G	A	6.351e^-5	0.659	UPSTREAM CG13101 DOWNSTREAM rost INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	14581515	3L_14581515_SNP [dm3] 3L_14588415_SNP [dm6]	C	A	6.381e^-5	0.659	INTRON HGTX
3L	14581527	3L_14581527_SNP [dm3] 3L_14588427_SNP [dm6]	A	T	6.460e^-5	0.659	INTRON HGTX
X	4110468	X_4110468_SNP [dm3] X_4216435_SNP [dm6]	C	T	6.469e^-5	0.659	DOWNSTREAM CG15571 INTERGENIC
2L	2344644	2L_2344644_SNP [dm3] 2L_2344644_SNP [dm6]	G	A	6.576e^-5	0.659	INTRON CG9967 & 1 other
3R	26068476	3R_26068476_SNP [dm3] 3R_30242754_SNP [dm6]	C	T	6.640e^-5	0.659	SYNONYMOUS_CODING CG9737
2L	18139362	2L_18139362_SNP [dm3] 2L_18139362_SNP [dm6]	A	C	6.656e^-5	0.659	UTR_3_PRIME Socs36E	TF binding site mE1_TFBS_cad
3R	26936496	3R_26936496_SNP [dm3] 3R_31110774_SNP [dm6]	A	T	6.664e^-5	0.659	INTERGENIC
2L	2290602	2L_2290602_SNP [dm3] 2L_2290602_SNP [dm6]	T	C	6.773e^-5	0.659	SYNONYMOUS_CODING robl22E
3R	16387177	3R_16387177_SNP [dm3] 3R_20561455_SNP [dm6]	A	G	6.827e^-5	0.659	INTRON CG5191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5724270	2R_5724270_SNP [dm3] 2R_9836765_SNP [dm6]	A	G	6.884e^-5	0.659	UPSTREAM CG1663 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
X	18675718	X_18675718_SNP [dm3] X_18781685_SNP [dm6]	C	T	6.890e^-5	0.659	UTR_3_PRIME CG18259 DOWNSTREAM CG6891	TF binding site mE1_TFBS_h mE1_TFBS_HSA
2R	9265696	2R_9265696_SNP [dm3] 2R_13378191_SNP [dm6]	C	A	6.901e^-5	0.659	UPSTREAM CG10814 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	9222649	X_9222649_SNP [dm3] X_9328616_SNP [dm6]	C	T	6.942e^-5	0.659	DOWNSTREAM CG34450 INTRON CG34449	TF binding site BDTNP1_TFBS_da
3R	17970433	3R_17970433_SNP [dm3] 3R_22144711_SNP [dm6]	T	C	6.958e^-5	0.659	INTRON SKIP	TF binding site mE1_TFBS_cad
2R	11315245	2R_11315245_SNP [dm3] 2R_15427740_SNP [dm6]	G	A	6.982e^-5	0.659	NON_SYNONYMOUS_CODING CG34188 INTRON CG43729
X	12163327	X_12163327_SNP [dm3] X_12269294_SNP [dm6]	A	G	7.007e^-5	0.659	INTRON Ten-a
2L	1994259	2L_1994259_SNP [dm3] 2L_1994259_SNP [dm6]	C	T	7.017e^-5	0.659	INTERGENIC
2L	16834048	2L_16834048_SNP [dm3] 2L_16834048_SNP [dm6]	G	T	7.040e^-5	0.659	UPSTREAM CG13282 INTRON CG13282	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12903027	X_12903027_INS [dm3] X_13008994_INS [dm6]	T	TA	7.076e^-5	0.659	INTRON rad
X	11904006	X_11904006_SNP [dm3] X_12009973_SNP [dm6]	T	G	7.235e^-5	0.659	DOWNSTREAM CG1492 & 1 other INTERGENIC
2R	3895122	2R_3895122_SNP [dm3] 2R_8007617_SNP [dm6]	G	T	7.245e^-5	0.659	DOWNSTREAM Odc1 INTRON Odc2	TF binding site mE1_TFBS_cad
2L	3629100	2L_3629100_SNP [dm3] 2L_3629100_SNP [dm6]	T	C	7.289e^-5	0.659	INTRON for	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	932938	2L_932938_SNP [dm3] 2L_932938_SNP [dm6]	T	G	7.348e^-5	0.659	INTRON CG4341	TF binding site BDTNP1_TFBS_twi
X	19163537	X_19163537_SNP [dm3] X_19269504_SNP [dm6]	T	C	7.385e^-5	0.659	SYNONYMOUS_CODING Vav UPSTREAM CG8010	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	10003968	3L_10003968_SNP [dm3] 3L_10010868_SNP [dm6]	G	A	7.457e^-5	0.659	INTRON dpr6
X	5946894	X_5946894_DEL [dm3] X_6052861_DEL [dm6]	CGGCTCAGCTC...	C	7.459e^-5	0.659	INTRON CG5921
3L	19569157	3L_19569157_SNP [dm3] 3L_19576057_SNP [dm6]	G	A	7.499e^-5	0.659	INTRON Shal
X	19163795	X_19163795_SNP [dm3] X_19269762_SNP [dm6]	G	A	7.565e^-5	0.659	SYNONYMOUS_CODING Vav UPSTREAM CG8010	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_sens
3R	1228426	3R_1228426_SNP [dm3] 3R_5402704_SNP [dm6]	A	T	7.807e^-5	0.659	INTRON CG2663
X	9325686	X_9325686_SNP [dm3] X_9431653_SNP [dm6]	G	A	7.817e^-5	0.659	INTRON mgl
3L	11194623	3L_11194623_SNP [dm3] 3L_11201523_SNP [dm6]	G	A	7.838e^-5	0.659	NON_SYNONYMOUS_CODING CG14141 DOWNSTREAM CG7607 INTRON Plod
2R	5717454	2R_5717454_SNP [dm3] 2R_9829949_SNP [dm6]	A	G	7.882e^-5	0.659	INTRON hebe	TF binding site mE1_TFBS_cad
3L	8073051	3L_8073051_INS [dm3] 3L_8079951_INS [dm6]	A	AG	7.908e^-5	0.659	INTRON Ect4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	13358705	2L_13358705_SNP [dm3] 2L_13358705_SNP [dm6]	A	G	7.928e^-5	0.659	INTERGENIC
X	14238544	X_14238544_SNP [dm3] X_14344511_SNP [dm6]	G	C	7.942e^-5	0.659	INTRON dpr8
3R	27534290	3R_27534290_SNP [dm3] 3R_31708568_SNP [dm6]	A	T	7.974e^-5	0.659	UPSTREAM CR34046 & 1 other INTERGENIC
3R	26807073	3R_26807073_SNP [dm3] 3R_30981351_SNP [dm6]	C	T	8.012e^-5	0.659	INTRON 5-HT7
2L	2344295	2L_2344295_SNP [dm3] 2L_2344295_SNP [dm6]	G	T	8.073e^-5	0.659	INTRON CG9967 & 1 other
3L	4154277	3L_4154277_SNP [dm3] 3L_4154277_SNP [dm6]	G	T	8.092e^-5	0.659	INTRON nab
2L	3723774	2L_3723774_SNP [dm3] 2L_3723774_SNP [dm6]	T	A	8.193e^-5	0.659	INTRON Shaw
3R	15759532	3R_15759532_SNP [dm3] 3R_19933810_SNP [dm6]	A	G	8.218e^-5	0.659	SYNONYMOUS_CODING mira INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6759527	2L_6759527_SNP [dm3] 2L_6759527_SNP [dm6]	T	C	8.226e^-5	0.659	UTR_5_PRIME CG11322 DOWNSTREAM CG11321	TF binding site mE1_TFBS_cad
3R	975161	3R_975161_SNP [dm3] 3R_5149439_SNP [dm6]	T	C	8.238e^-5	0.659	INTERGENIC
2R	14450628	2R_14450628_SNP [dm3] 2R_18563123_SNP [dm6]	G	C	8.294e^-5	0.659	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10325850	3L_10325850_DEL [dm3] 3L_10332750_DEL [dm6]	GTC	G	8.333e^-5	0.659	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	19436398	2L_19436398_SNP [dm3] 2L_19436398_SNP [dm6]	G	A	8.367e^-5	0.659	SYNONYMOUS_CODING CG10237 DOWNSTREAM Rab9	TF binding site mE1_TFBS_chinmo
3R	23542766	3R_23542766_SNP [dm3] 3R_27717044_SNP [dm6]	G	C	8.367e^-5	0.659	INTERGENIC
3R	13924876	3R_13924876_INS [dm3] 3R_18099154_INS [dm6]	T	TCTAAGGAAGAACGCTTGGG...	8.383e^-5	0.659	INTRON sr
2L	1686715	2L_1686715_SNP [dm3] 2L_1686715_SNP [dm6]	G	A	8.419e^-5	0.659	INTRON chinmo
2R	19605322	2R_19605322_SNP [dm3] 2R_23717799_SNP [dm6]	G	A	8.453e^-5	0.659	DOWNSTREAM CG18128 INTRON Sesn	TF binding site mE1_TFBS_chinmo
X	4791816	X_4791816_SNP [dm3] X_4897783_SNP [dm6]	A	G	8.485e^-5	0.659	INTRON CG42594
3R	26872921	3R_26872921_SNP [dm3] 3R_31047199_SNP [dm6]	T	C	8.519e^-5	0.659	DOWNSTREAM CanA1 INTERGENIC
3L	15894447	3L_15894447_SNP [dm3] 3L_15901347_SNP [dm6]	G	A	8.538e^-5	0.659	UTR_3_PRIME sff
3L	7577097	3L_7577097_SNP [dm3] 3L_7583997_SNP [dm6]	C	T	8.562e^-5	0.659	SYNONYMOUS_CODING CG14838
2L	16804513	2L_16804513_SNP [dm3] 2L_16804513_SNP [dm6]	T	A	8.577e^-5	0.659	UPSTREAM CG13272 & 1 other INTRON CG13280
3L	14570040	3L_14570040_SNP [dm3] 3L_14576940_SNP [dm6]	T	C	8.601e^-5	0.659	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17809011	2L_17809011_SNP [dm3] 2L_17809011_SNP [dm6]	T	C	8.674e^-5	0.659	INTRON CadN2
2L	19475612	2L_19475612_SNP [dm3] 2L_19475612_SNP [dm6]	A	G	8.748e^-5	0.659	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16387165	3R_16387165_SNP [dm3] 3R_20561443_SNP [dm6]	C	T	8.752e^-5	0.659	INTRON CG5191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15759769	3R_15759769_SNP [dm3] 3R_19934047_SNP [dm6]	T	C	8.759e^-5	0.659	SYNONYMOUS_CODING mira INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5675447	3L_5675447_SNP [dm3] 3L_5682347_SNP [dm6]	C	G	8.766e^-5	0.659	INTRON sif
X	2878271	X_2878271_SNP [dm3] X_2984238_SNP [dm6]	G	T	8.797e^-5	0.659	INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5712934	X_5712934_SNP [dm3] X_5818901_SNP [dm6]	A	G	8.818e^-5	0.659	UPSTREAM CG15765 INTRON CG15765	TF binding site BDTNP1_TFBS_dl
2L	5383438	2L_5383438_SNP [dm3] 2L_5383438_SNP [dm6]	G	C	8.940e^-5	0.659	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	2440371	3L_2440371_SNP [dm3] 3L_2440371_SNP [dm6]	G	T	8.962e^-5	0.659	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco
2L	16804503	2L_16804503_SNP [dm3] 2L_16804503_SNP [dm6]	C	T	8.966e^-5	0.659	UPSTREAM CG13272 & 1 other INTRON CG13280
2L	16804548	2L_16804548_SNP [dm3] 2L_16804548_SNP [dm6]	T	A	8.968e^-5	0.659	UPSTREAM CG13272 & 1 other INTRON CG13280
3L	4539644	3L_4539644_SNP [dm3] 3L_4539644_SNP [dm6]	C	T	8.984e^-5	0.659	SYNONYMOUS_CODING CG32243 DOWNSTREAM CG11353
3L	1996667	3L_1996667_SNP [dm3] 3L_1996667_SNP [dm6]	A	G	8.985e^-5	0.659	INTERGENIC
3R	17923510	3R_17923510_SNP [dm3] 3R_22097788_SNP [dm6]	A	T	9.011e^-5	0.659	INTRON CG5778
3L	9301041	3L_9301041_SNP [dm3] 3L_9307941_SNP [dm6]	G	C	9.019e^-5	0.659	INTERGENIC
3L	18280314	3L_18280314_SNP [dm3] 3L_18287214_SNP [dm6]	T	A	9.034e^-5	0.659	INTERGENIC
3R	1005337	3R_1005337_SNP [dm3] 3R_5179615_SNP [dm6]	C	T	9.057e^-5	0.659	NON_SYNONYMOUS_CODING cno INTRON cno	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	9773598	2L_9773598_SNP [dm3] 2L_9773598_SNP [dm6]	C	A	9.107e^-5	0.659	UPSTREAM ppk16 INTRON ppk11
3R	17923671	3R_17923671_DEL [dm3] 3R_22097949_DEL [dm6]	TT	T	9.143e^-5	0.659	INTRON CG5778
X	14165759	X_14165759_SNP [dm3] X_14271726_SNP [dm6]	C	T	9.167e^-5	0.659	INTRON na	TF binding site mE1_TFBS_chinmo
3R	25557449	3R_25557449_SNP [dm3] 3R_29731727_SNP [dm6]	T	C	9.443e^-5	0.659	SYNONYMOUS_CODING Kul UTR_3_PRIME Kul	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19231432	2R_19231432_SNP [dm3] 2R_23343909_SNP [dm6]	C	T	9.467e^-5	0.659	NON_SYNONYMOUS_CODING CG3502
X	11658627	X_11658627_SNP [dm3] X_11764594_SNP [dm6]	C	T	9.475e^-5	0.659	UPSTREAM CG9360 INTRON m	TF binding site mE1_TFBS_cnc
2R	12060106	2R_12060106_SNP [dm3] 2R_16172601_SNP [dm6]	T	G	9.552e^-5	0.659	INTRON Ptp52F	TF binding site mE1_TFBS_cad
3L	19930512	3L_19930512_SNP [dm3] 3L_19937412_SNP [dm6]	T	G	9.557e^-5	0.659	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	8275851	2L_8275851_SNP [dm3] 2L_8275851_SNP [dm6]	A	G	9.576e^-5	0.659	INTRON Btk29A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	3861554	2R_3861554_SNP [dm3] 2R_7974049_SNP [dm6]	T	C	9.604e^-5	0.659	UTR_3_PRIME CSN4 DOWNSTREAM ACC
2R	14442894	2R_14442894_SNP [dm3] 2R_18555389_SNP [dm6]	A	T	9.611e^-5	0.659	SYNONYMOUS_CODING GEFmeso UTR_3_PRIME GEFmeso	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9744863	3L_9744863_SNP [dm3] 3L_9751763_SNP [dm6]	G	A	9.700e^-5	0.659	UPSTREAM CG42268 INTRON CG42268	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	2041338	3L_2041338_SNP [dm3] 3L_2041338_SNP [dm6]	C	T	9.701e^-5	0.659	SPLICE_SITE_REGION sls INTRON sls
3R	17221925	3R_17221925_SNP [dm3] 3R_21396203_SNP [dm6]	G	C	9.712e^-5	0.659	INTERGENIC
2R	5738221	2R_5738221_SNP [dm3] 2R_9850716_SNP [dm6]	T	A	9.731e^-5	0.659	UTR_3_PRIME CG1516 DOWNSTREAM CG1671
3R	26878386	3R_26878386_SNP [dm3] 3R_31052664_SNP [dm6]	T	A	9.791e^-5	0.659	UTR_3_PRIME l_3_03670 DOWNSTREAM Aph-4	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	12804327	3L_12804327_SNP [dm3] 3L_12811227_SNP [dm6]	A	C	9.808e^-5	0.659	NON_SYNONYMOUS_CODING Sap130	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	3616304	2R_3616304_SNP [dm3] 2R_7728799_SNP [dm6]	G	T	9.926e^-5	0.659	INTRON CG18812
3R	1006754	3R_1006754_SNP [dm3] 3R_5181032_SNP [dm6]	G	A	9.927e^-5	0.659	INTRON cno	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	5190274	3L_5190274_INS [dm3] 3L_5197174_INS [dm6]	A	AA	1.006e^-4	0.659	INTRON shep
2L	18668754	2L_18668754_SNP [dm3] 2L_18668754_SNP [dm6]	A	G	1.008e^-4	0.659	SYNONYMOUS_CODING CG43338	TF binding site mE1_TFBS_cad
2R	10803034	2R_10803034_SNP [dm3] 2R_14915529_SNP [dm6]	A	T	1.010e^-4	0.659	INTRON CG10249
3R	26281139	3R_26281139_SNP [dm3] 3R_30455417_SNP [dm6]	G	A	1.012e^-4	0.659	INTRON aralar1
X	8703728	X_8703728_INS [dm3] X_8809695_INS [dm6]	C	AAA	1.023e^-4	0.659	INTERGENIC
2L	8984052	2L_8984052_SNP [dm3] 2L_8984052_SNP [dm6]	G	A	1.030e^-4	0.659	INTRON CG13101
2R	12998940	2R_12998940_SNP [dm3] 2R_17111435_SNP [dm6]	G	T	1.031e^-4	0.659	INTRON CG15611
2L	17548346	2L_17548346_SNP [dm3] 2L_17548346_SNP [dm6]	T	C	1.032e^-4	0.659	DOWNSTREAM CR45697 INTERGENIC
2L	990426	2L_990426_SNP [dm3] 2L_990426_SNP [dm6]	T	G	1.040e^-4	0.659	INTRON CR44801
3R	26935902	3R_26935902_SNP [dm3] 3R_31110180_SNP [dm6]	A	T	1.040e^-4	0.659	UPSTREAM CG11318 INTERGENIC
2L	2859726	2L_2859726_SNP [dm3] 2L_2859726_SNP [dm6]	G	A	1.046e^-4	0.659	INTRON CG2991
3R	3659124	3R_3659124_DEL [dm3] 3R_7833402_DEL [dm6]	TGCT	T	1.048e^-4	0.659	INTRON CG34384
3L	8020015	3L_8020015_DEL [dm3] 3L_8026915_DEL [dm6]	AA	A	1.052e^-4	0.659	INTRON nmo
2L	19365484	2L_19365484_SNP [dm3] 2L_19365484_SNP [dm6]	A	G	1.054e^-4	0.659	DOWNSTREAM CG13086 INTERGENIC
2R	18652468	2R_18652468_SNP [dm3] 2R_22764963_SNP [dm6]	G	A	1.058e^-4	0.659	UTR_3_PRIME CG13527 DOWNSTREAM CG13527 INTRON CG42260
2L	5636547	2L_5636547_SNP [dm3] 2L_5636547_SNP [dm6]	T	C	1.063e^-4	0.659	INTRON CG31646
3L	15243225	3L_15243225_SNP [dm3] 3L_15250125_SNP [dm6]	T	A	1.065e^-4	0.659	INTERGENIC
3L	12805359	3L_12805359_SNP [dm3] 3L_12812259_SNP [dm6]	A	C	1.071e^-4	0.659	DOWNSTREAM CG10754 INTRON Sap130	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	1543426	3L_1543426_SNP [dm3] 3L_1543426_SNP [dm6]	G	A	1.072e^-4	0.659	SYNONYMOUS_CODING CG7852 UTR_3_PRIME CG7852
3L	14566958	3L_14566958_SNP [dm3] 3L_14573858_SNP [dm6]	G	C	1.085e^-4	0.659	INTERGENIC
2R	6076521	2R_6076521_SNP [dm3] 2R_10189016_SNP [dm6]	C	T	1.086e^-4	0.659	INTRON KCNQ
2L	19365491	2L_19365491_SNP [dm3] 2L_19365491_SNP [dm6]	T	C	1.095e^-4	0.659	DOWNSTREAM CG13086 INTERGENIC
2L	19516402	2L_19516402_SNP [dm3] 2L_19516402_SNP [dm6]	C	G	1.096e^-4	0.659	INTRON CG10186	TF binding site mE1_TFBS_chinmo
3R	10255625	3R_10255625_SNP [dm3] 3R_14429903_SNP [dm6]	A	C	1.099e^-4	0.659	INTRON cv-c	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	3671940	3R_3671940_SNP [dm3] 3R_7846218_SNP [dm6]	G	C	1.100e^-4	0.659	NON_SYNONYMOUS_CODING CG34384
3L	18617870	3L_18617870_SNP [dm3] 3L_18624770_SNP [dm6]	T	C	1.100e^-4	0.659	DOWNSTREAM bora INTERGENIC
3R	1279701	3R_1279701_SNP [dm3] 3R_5453979_SNP [dm6]	A	G	1.102e^-4	0.659	INTRON CG14669
3L	3992940	3L_3992940_SNP [dm3] 3L_3992940_SNP [dm6]	C	G	1.103e^-4	0.659	UTR_3_PRIME scrt
3R	25212571	3R_25212571_SNP [dm3] 3R_29386849_SNP [dm6]	G	T	1.116e^-4	0.659	INTRON Ptp99A	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	2291145	2L_2291145_SNP [dm3] 2L_2291145_SNP [dm6]	T	C	1.118e^-4	0.659	UPSTREAM robl22E INTERGENIC
3L	1136713	3L_1136713_SNP [dm3] 3L_1136713_SNP [dm6]	A	G	1.120e^-4	0.659	INTERGENIC
X	14235176	X_14235176_SNP [dm3] X_14341143_SNP [dm6]	T	G	1.120e^-4	0.659	INTRON dpr8
2L	19365472	2L_19365472_SNP [dm3] 2L_19365472_SNP [dm6]	G	T	1.121e^-4	0.659	DOWNSTREAM CG13086 INTERGENIC
3L	12255503	3L_12255503_SNP [dm3] 3L_12262403_SNP [dm6]	T	C	1.130e^-4	0.659	INTRON app	TF binding site mE1_TFBS_inv
2R	18652757	2R_18652757_SNP [dm3] 2R_22765252_SNP [dm6]	C	T	1.133e^-4	0.659	UTR_3_PRIME CG13527 DOWNSTREAM CG13527 INTRON CG42260
2R	9209376	2R_9209376_DEL [dm3] 2R_13321871_DEL [dm6]	GTGG	G	1.135e^-4	0.659	INTERGENIC
2L	18639959	2L_18639959_SNP [dm3] 2L_18639959_SNP [dm6]	T	G	1.136e^-4	0.659	INTRON MESR3
3R	13460707	3R_13460707_SNP [dm3] 3R_17634985_SNP [dm6]	T	G	1.136e^-4	0.659	INTRON CG43175
2R	12372668	2R_12372668_SNP [dm3] 2R_16485163_SNP [dm6]	G	A	1.140e^-4	0.659	SYNONYMOUS_CODING CG15712	TF binding site mE1_TFBS_HSA
X	15496862	X_15496862_SNP [dm3] X_15602829_SNP [dm6]	A	C	1.140e^-4	0.659	DOWNSTREAM sog INTERGENIC
2L	17550004	2L_17550004_SNP [dm3] 2L_17550004_SNP [dm6]	T	G	1.140e^-4	0.659	INTERGENIC
3R	26881168	3R_26881168_SNP [dm3] 3R_31055446_SNP [dm6]	T	C	1.142e^-4	0.659	UTR_3_PRIME dco
3R	15778850	3R_15778850_SNP [dm3] 3R_19953128_SNP [dm6]	G	A	1.148e^-4	0.659	INTRON Hs6st
2R	3908827	2R_3908827_SNP [dm3] 2R_8021322_SNP [dm6]	G	A	1.161e^-4	0.659	EXON CR45267	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6837443	3L_6837443_SNP [dm3] 3L_6844343_SNP [dm6]	G	T	1.165e^-4	0.659	INTERGENIC
3L	18479417	3L_18479417_SNP [dm3] 3L_18486317_SNP [dm6]	A	C	1.167e^-4	0.659	UTR_3_PRIME AstC-R2 DOWNSTREAM AstC-R2
2R	6662216	2R_6662216_SNP [dm3] 2R_10774711_SNP [dm6]	T	C	1.176e^-4	0.659	INTRON CG33144
2R	18779520	2R_18779520_SNP [dm3] 2R_22891997_SNP [dm6]	C	T	1.177e^-4	0.659	SYNONYMOUS_CODING MED23
3R	15760726	3R_15760726_DEL [dm3] 3R_19935004_DEL [dm6]	CC	C	1.178e^-4	0.659	UTR_5_PRIME mira UPSTREAM mira INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17622319	2L_17622319_SNP [dm3] 2L_17622319_SNP [dm6]	T	C	1.178e^-4	0.659	INTERGENIC
2L	19271739	2L_19271739_SNP [dm3] 2L_19271739_SNP [dm6]	G	C	1.180e^-4	0.659	EXON CR44190
2R	18014086	2R_18014086_SNP [dm3] 2R_22126581_SNP [dm6]	C	T	1.182e^-4	0.659	SYNONYMOUS_CODING GM130	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	20885775	X_20885775_SNP [dm3] X_21014748_SNP [dm6]	C	A	1.185e^-4	0.659	INTERGENIC
2L	5662989	2L_5662989_SNP [dm3] 2L_5662989_SNP [dm6]	A	T	1.186e^-4	0.659	UPSTREAM CR44821 INTRON Hsp60C
3L	4154299	3L_4154299_SNP [dm3] 3L_4154299_SNP [dm6]	T	C	1.192e^-4	0.659	INTRON nab
3L	19362376	3L_19362376_SNP [dm3] 3L_19369276_SNP [dm6]	T	C	1.196e^-4	0.659	INTRON CG32206
3L	1999128	3L_1999128_SNP [dm3] 3L_1999128_SNP [dm6]	C	T	1.200e^-4	0.659	INTERGENIC
3L	4979088	3L_4979088_SNP [dm3] 3L_4979088_SNP [dm6]	G	A	1.201e^-4	0.659	DOWNSTREAM CG17030 INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	25170020	3R_25170020_SNP [dm3] 3R_29344298_SNP [dm6]	C	G	1.202e^-4	0.659	INTERGENIC
2L	16804465	2L_16804465_SNP [dm3] 2L_16804465_SNP [dm6]	A	T	1.208e^-4	0.659	UPSTREAM CG13272 & 1 other INTRON CG13280
3L	19569193	3L_19569193_DEL [dm3] 3L_19576093_DEL [dm6]	TTTTTATAATGATTATATT...	T	1.209e^-4	0.659	INTRON Shal
3L	2203579	3L_2203579_SNP [dm3] 3L_2203579_SNP [dm6]	T	C	1.218e^-4	0.659	INTERGENIC
3L	13862769	3L_13862769_SNP [dm3] 3L_13869669_SNP [dm6]	C	T	1.226e^-4	0.659	UTR_3_PRIME dysc
3L	18749704	3L_18749704_SNP [dm3] 3L_18756604_SNP [dm6]	A	T	1.227e^-4	0.659	INTRON ftz-f1
X	15794044	X_15794044_SNP [dm3] X_15900011_SNP [dm6]	T	C	1.227e^-4	0.659	INTRON shi
3L	7573248	3L_7573248_SNP [dm3] 3L_7580148_SNP [dm6]	C	G	1.228e^-4	0.659	INTERGENIC
3R	26782610	3R_26782610_SNP [dm3] 3R_30956888_SNP [dm6]	G	C	1.230e^-4	0.659	INTERGENIC
X	5698817	X_5698817_INS [dm3] X_5804784_INS [dm6]	C	CATATCAATCGAATAC...	1.232e^-4	0.659	INTRON Cpr5C
3L	11362003	3L_11362003_SNP [dm3] 3L_11368903_SNP [dm6]	G	A	1.241e^-4	0.659	INTERGENIC
2L	6759523	2L_6759523_SNP [dm3] 2L_6759523_SNP [dm6]	T	C	1.243e^-4	0.659	UTR_5_PRIME CG11322 DOWNSTREAM CG11321	TF binding site mE1_TFBS_cad
3L	2749932	3L_2749932_SNP [dm3] 3L_2749932_SNP [dm6]	C	T	1.244e^-4	0.659	INTRON Mrtf
X	12347669	X_12347669_SNP [dm3] X_12453636_SNP [dm6]	G	A	1.245e^-4	0.659	UTR_3_PRIME Pkcdelta
3R	26564488	3R_26564488_SNP [dm3] 3R_30738766_SNP [dm6]	G	T	1.246e^-4	0.659	INTERGENIC
3L	17746526	3L_17746526_INS [dm3] 3L_17753426_INS [dm6]	C	TG	1.256e^-4	0.659	INTRON Adgf-A
3L	17746528	3L_17746528_SNP [dm3] 3L_17753428_SNP [dm6]	A	C	1.256e^-4	0.659	INTRON Adgf-A
2R	11731172	2R_11731172_DEL [dm3] 2R_15843667_DEL [dm6]	TAT	T	1.262e^-4	0.659	UTR_3_PRIME CG8249 DOWNSTREAM CG8249 INTRON tun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	14584450	3L_14584450_SNP [dm3] 3L_14591350_SNP [dm6]	G	C	1.269e^-4	0.659	INTRON HGTX
2L	7488723	2L_7488723_SNP [dm3] 2L_7488723_SNP [dm6]	G	A	1.272e^-4	0.659	INTRON Ziz
2L	13423438	2L_13423438_SNP [dm3] 2L_13423438_SNP [dm6]	A	T	1.276e^-4	0.659	INTRON CG42784
3L	19571336	3L_19571336_SNP [dm3] 3L_19578236_SNP [dm6]	G	T	1.277e^-4	0.659	INTRON Shal
X	16859829	X_16859829_SNP [dm3] X_16965796_SNP [dm6]	G	A	1.282e^-4	0.659	INTRON CG9086	TF binding site BDTNP1_TFBS_twi
2L	2344842	2L_2344842_SNP [dm3] 2L_2344842_SNP [dm6]	A	T	1.288e^-4	0.659	INTRON CG9967 & 1 other
3L	4539221	3L_4539221_SNP [dm3] 3L_4539221_SNP [dm6]	C	T	1.290e^-4	0.659	UTR_3_PRIME CG11353 DOWNSTREAM CG32243	TF binding site BDTNP1_TFBS_twi
3L	14622543	3L_14622543_SNP [dm3] 3L_14629443_SNP [dm6]	G	T	1.314e^-4	0.659	NON_SYNONYMOUS_CODING RecQ5 UTR_3_PRIME RecQ5
X	4423692	X_4423692_SNP [dm3] X_4529659_SNP [dm6]	T	A	1.316e^-4	0.659	UPSTREAM CG3556 INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2L	9772794	2L_9772794_SNP [dm3] 2L_9772794_SNP [dm6]	A	G	1.318e^-4	0.659	SYNONYMOUS_CODING ppk16 DOWNSTREAM ppk11
X	5626891	X_5626891_SNP [dm3] X_5732858_SNP [dm6]	T	C	1.326e^-4	0.659	SYNONYMOUS_CODING CG15773 INTRON CG32758	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8363088	3L_8363088_SNP [dm3] 3L_8369988_SNP [dm6]	T	C	1.329e^-4	0.659	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	25580672	3R_25580672_SNP [dm3] 3R_29754950_SNP [dm6]	A	G	1.334e^-4	0.659	DOWNSTREAM CR44953 & 1 other INTERGENIC
3R	7891772	3R_7891772_SNP [dm3] 3R_12066050_SNP [dm6]	G	C	1.335e^-4	0.659	INTERGENIC
3R	27030025	3R_27030025_SNP [dm3] 3R_31204303_SNP [dm6]	T	C	1.336e^-4	0.659	UTR_3_PRIME chp DOWNSTREAM CG1544
3L	16686471	3L_16686471_SNP [dm3] 3L_16693371_SNP [dm6]	C	T	1.337e^-4	0.659	INTRON Lasp & 2 others	TF binding site mE1_TFBS_cad
3R	23346886	3R_23346886_SNP [dm3] 3R_27521164_SNP [dm6]	C	A	1.337e^-4	0.659	INTRON CG12885
3R	25170136	3R_25170136_SNP [dm3] 3R_29344414_SNP [dm6]	C	T	1.341e^-4	0.659	INTERGENIC
2L	19412629	2L_19412629_SNP [dm3] 2L_19412629_SNP [dm6]	T	G	1.344e^-4	0.659	UPSTREAM Pax INTRON Pax
2R	18060045	2R_18060045_SNP [dm3] 2R_22172540_SNP [dm6]	C	A	1.348e^-4	0.659	UTR_3_PRIME a DOWNSTREAM CG3045
2R	8994552	2R_8994552_SNP [dm3] 2R_13107047_SNP [dm6]	G	A	1.348e^-4	0.659	INTERGENIC
2L	6758985	2L_6758985_SNP [dm3] 2L_6758985_SNP [dm6]	A	C	1.350e^-4	0.659	SYNONYMOUS_CODING CG11322 DOWNSTREAM CG11321	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13839796	3L_13839796_SNP [dm3] 3L_13846696_SNP [dm6]	T	G	1.353e^-4	0.659	INTRON Hml
3R	11004510	3R_11004510_INS [dm3] 3R_15178788_INS [dm6]	A	AAA	1.358e^-4	0.659	INTRON Gyc88E & 1 other
2L	5466076	2L_5466076_SNP [dm3] 2L_5466076_SNP [dm6]	G	A	1.358e^-4	0.659	SYNONYMOUS_CODING mid	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7758180	2L_7758180_SNP [dm3] 2L_7758180_SNP [dm6]	A	G	1.365e^-4	0.659	INTRON CG7196	TF binding site mE1_TFBS_HSA
3L	4381648	3L_4381648_SNP [dm3] 3L_4381648_SNP [dm6]	G	A	1.366e^-4	0.659	UPSTREAM CG32240 INTERGENIC
3L	8384568	3L_8384568_SNP [dm3] 3L_8391468_SNP [dm6]	A	G	1.367e^-4	0.659	UPSTREAM Jon66Ci DOWNSTREAM ImpE1 INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2R	17923906	2R_17923906_SNP [dm3] 2R_22036401_SNP [dm6]	A	T	1.377e^-4	0.659	DOWNSTREAM CG9308 INTRON CG34370
2L	19365474	2L_19365474_DEL [dm3] 2L_19365474_DEL [dm6]	ATAAGCA	G	1.378e^-4	0.659	DOWNSTREAM CG13086 INTERGENIC
X	14237006	X_14237006_SNP [dm3] X_14342973_SNP [dm6]	T	C	1.381e^-4	0.659	INTRON dpr8
2L	16804498	2L_16804498_SNP [dm3] 2L_16804498_SNP [dm6]	C	T	1.384e^-4	0.659	UPSTREAM CG13272 & 1 other INTRON CG13280
3R	14843269	3R_14843269_SNP [dm3] 3R_19017547_SNP [dm6]	T	G	1.385e^-4	0.659	NON_SYNONYMOUS_CODING gukh INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4648982	2L_4648982_SNP [dm3] 2L_4648982_SNP [dm6]	C	A	1.388e^-4	0.659	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13107253	2R_13107253_SNP [dm3] 2R_17219748_SNP [dm6]	G	T	1.391e^-4	0.659	INTRON mbl
2L	19516424	2L_19516424_SNP [dm3] 2L_19516424_SNP [dm6]	T	G	1.394e^-4	0.659	INTRON CG10186	TF binding site mE1_TFBS_chinmo
3R	15623731	3R_15623731_SNP [dm3] 3R_19798009_SNP [dm6]	T	A	1.394e^-4	0.659	INTRON bnl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	9737361	3L_9737361_DEL [dm3] 3L_9744261_DEL [dm6]	CA	T	1.397e^-4	0.659	UPSTREAM CG42268 INTRON CG42268 EXON CR44348	TF binding site BDTNP1_TFBS_dl
3R	27077688	3R_27077688_SNP [dm3] 3R_31251966_SNP [dm6]	G	T	1.397e^-4	0.659	UTR_5_PRIME qless UPSTREAM mRpL32	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
2R	9266355	2R_9266355_SNP [dm3] 2R_13378850_SNP [dm6]	G	C	1.398e^-4	0.659	INTERGENIC
2L	3078770	2L_3078770_SNP [dm3] 2L_3078770_SNP [dm6]	C	T	1.403e^-4	0.659	INTRON toc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	14268555	2L_14268555_SNP [dm3] 2L_14268555_SNP [dm6]	C	T	1.405e^-4	0.659	INTRON wb
3L	4539251	3L_4539251_SNP [dm3] 3L_4539251_SNP [dm6]	T	C	1.407e^-4	0.659	UTR_3_PRIME CG11353 DOWNSTREAM CG32243	TF binding site BDTNP1_TFBS_twi
2L	19365619	2L_19365619_SNP [dm3] 2L_19365619_SNP [dm6]	G	A	1.419e^-4	0.659	DOWNSTREAM CG13086 INTERGENIC
X	14165762	X_14165762_SNP [dm3] X_14271729_SNP [dm6]	A	T	1.420e^-4	0.659	INTRON na	TF binding site mE1_TFBS_chinmo
3R	18932682	3R_18932682_SNP [dm3] 3R_23106960_SNP [dm6]	C	T	1.422e^-4	0.659	INTRON CG13830
2R	4917481	2R_4917481_SNP [dm3] 2R_9029976_SNP [dm6]	T	A	1.429e^-4	0.659	INTRON CG8170
3R	20439442	3R_20439442_SNP [dm3] 3R_24613720_SNP [dm6]	T	A	1.436e^-4	0.659	INTRON mld
2L	19338040	2L_19338040_SNP [dm3] 2L_19338040_SNP [dm6]	A	G	1.446e^-4	0.659	DOWNSTREAM dnt INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	1174186	3R_1174186_SNP [dm3] 3R_5348464_SNP [dm6]	G	C	1.446e^-4	0.659	INTRON mtd
X	16031093	X_16031093_SNP [dm3] X_16137060_SNP [dm6]	G	A	1.447e^-4	0.659	INTRON disco-r
3R	20527142	3R_20527142_SNP [dm3] 3R_24701420_SNP [dm6]	T	C	1.449e^-4	0.659	INTRON slo
3R	25170129	3R_25170129_SNP [dm3] 3R_29344407_SNP [dm6]	T	A	1.457e^-4	0.659	INTERGENIC
2L	13673275	2L_13673275_SNP [dm3] 2L_13673275_SNP [dm6]	A	C	1.461e^-4	0.659	DOWNSTREAM CG18507 INTERGENIC
X	7717494	X_7717494_SNP [dm3] X_7823461_SNP [dm6]	A	G	1.466e^-4	0.659	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	19365557	2L_19365557_MNP [dm3] 2L_19365557_MNP [dm6]	AAA	TTT	1.468e^-4	0.659	DOWNSTREAM CG13086 INTERGENIC
3L	14566901	3L_14566901_SNP [dm3] 3L_14573801_SNP [dm6]	G	T	1.473e^-4	0.659	INTERGENIC
2L	5878445	2L_5878445_SNP [dm3] 2L_5878445_SNP [dm6]	C	T	1.476e^-4	0.659	INTRON rau	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	15496858	X_15496858_SNP [dm3] X_15602825_SNP [dm6]	G	A	1.480e^-4	0.659	DOWNSTREAM sog INTERGENIC
3R	18235594	3R_18235594_SNP [dm3] 3R_22409872_SNP [dm6]	C	T	1.481e^-4	0.659	SYNONYMOUS_CODING CG13850
2R	7823127	2R_7823127_INS [dm3] 2R_11935622_INS [dm6]	G	GCAACGA	1.481e^-4	0.659	INTERGENIC
3R	7891773	3R_7891773_SNP [dm3] 3R_12066051_SNP [dm6]	G	T	1.481e^-4	0.659	INTERGENIC
2L	20253212	2L_20253212_SNP [dm3] 2L_20253212_SNP [dm6]	T	G	1.486e^-4	0.659	DOWNSTREAM CR40465 INTERGENIC
3L	6093590	3L_6093590_SNP [dm3] 3L_6100490_SNP [dm6]	T	C	1.493e^-4	0.659	UTR_5_PRIME Ets65A
X	14237113	X_14237113_SNP [dm3] X_14343080_SNP [dm6]	G	A	1.499e^-4	0.659	INTRON dpr8
2L	17552096	2L_17552096_SNP [dm3] 2L_17552096_SNP [dm6]	T	C	1.504e^-4	0.659	INTERGENIC
3L	14330488	3L_14330488_SNP [dm3] 3L_14337388_SNP [dm6]	G	A	1.508e^-4	0.659	INTRON fz
3R	9693843	3R_9693843_SNP [dm3] 3R_13868121_SNP [dm6]	A	T	1.524e^-4	0.659	INTRON E5	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	3803527	3R_3803527_SNP [dm3] 3R_7977805_SNP [dm6]	C	T	1.527e^-4	0.659	UPSTREAM CD98hc INTRON CD98hc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	7573203	3L_7573203_SNP [dm3] 3L_7580103_SNP [dm6]	G	A	1.529e^-4	0.659	INTERGENIC
3L	7573269	3L_7573269_SNP [dm3] 3L_7580169_SNP [dm6]	G	T	1.529e^-4	0.659	INTERGENIC
X	8703739	X_8703739_SNP [dm3] X_8809706_SNP [dm6]	A	T	1.530e^-4	0.659	INTERGENIC
3L	5190523	3L_5190523_SNP [dm3] 3L_5197423_SNP [dm6]	A	T	1.532e^-4	0.659	INTRON shep
3R	18836998	3R_18836998_SNP [dm3] 3R_23011276_SNP [dm6]	A	G	1.532e^-4	0.659	UPSTREAM CG34375 DOWNSTREAM CR44225 INTERGENIC
2R	16290050	2R_16290050_SNP [dm3] 2R_20402545_SNP [dm6]	G	T	1.548e^-4	0.659	INTERGENIC
X	16861278	X_16861278_SNP [dm3] X_16967245_SNP [dm6]	T	A	1.550e^-4	0.659	INTRON CG9086	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2R	19282903	2R_19282903_SNP [dm3] 2R_23395380_SNP [dm6]	G	A	1.552e^-4	0.659	UTR_5_PRIME CG3530 INTRON CG3530	TF binding site mE1_TFBS_Trl
2L	19365587	2L_19365587_DEL [dm3] 2L_19365587_DEL [dm6]	ATCCAGAGTTTG...	A	1.554e^-4	0.659	DOWNSTREAM CG13086 INTERGENIC
2L	19365601	2L_19365601_SNP [dm3] 2L_19365601_SNP [dm6]	A	C	1.554e^-4	0.659	DOWNSTREAM CG13086 INTERGENIC
2L	19365602	2L_19365602_SNP [dm3] 2L_19365602_SNP [dm6]	A	G	1.554e^-4	0.659	DOWNSTREAM CG13086 INTERGENIC
3L	2001614	3L_2001614_SNP [dm3] 3L_2001614_SNP [dm6]	C	T	1.555e^-4	0.659	INTERGENIC
2R	4499250	2R_4499250_SNP [dm3] 2R_8611745_SNP [dm6]	G	C	1.557e^-4	0.659	UTR_3_PRIME rgr & 1 other DOWNSTREAM rgr
3L	18577945	3L_18577945_SNP [dm3] 3L_18584845_SNP [dm6]	G	T	1.557e^-4	0.659	DOWNSTREAM CR45435 INTERGENIC
2R	6575411	2R_6575411_SNP [dm3] 2R_10687906_SNP [dm6]	A	G	1.562e^-4	0.659	INTRON stan
X	10215065	X_10215065_SNP [dm3] X_10321032_SNP [dm6]	C	A	1.563e^-4	0.659	INTRON alpha-Man-I
3R	18400390	3R_18400390_SNP [dm3] 3R_22574668_SNP [dm6]	T	A	1.564e^-4	0.659	INTRON CG33110
2L	19365583	2L_19365583_SNP [dm3] 2L_19365583_SNP [dm6]	A	G	1.565e^-4	0.659	DOWNSTREAM CG13086 INTERGENIC
3R	5772194	3R_5772194_SNP [dm3] 3R_9946472_SNP [dm6]	A	T	1.568e^-4	0.659	INTRON Glut4EF	TF binding site mE1_TFBS_cad
3L	1924802	3L_1924802_SNP [dm3] 3L_1924802_SNP [dm6]	A	T	1.569e^-4	0.659	SYNONYMOUS_CODING Dbx UPSTREAM tRNA:CR32312	TF binding site mE1_TFBS_chinmo
2L	19365542	2L_19365542_SNP [dm3] 2L_19365542_SNP [dm6]	A	G	1.580e^-4	0.659	DOWNSTREAM CG13086 INTERGENIC
3L	17280635	3L_17280635_SNP [dm3] 3L_17287535_SNP [dm6]	C	A	1.581e^-4	0.659	INTERGENIC
2R	4548414	2R_4548414_SNP [dm3] 2R_8660909_SNP [dm6]	G	A	1.582e^-4	0.659	SYNONYMOUS_CODING ptc	TF binding site mE1_TFBS_cad
X	4099096	X_4099096_SNP [dm3] X_4205063_SNP [dm6]	C	A	1.583e^-4	0.659	INTRON Fas2	TF binding site BDTNP1_TFBS_dl
3R	15694555	3R_15694555_SNP [dm3] 3R_19868833_SNP [dm6]	G	A	1.585e^-4	0.659	INTRON CG4562	TF binding site mE1_TFBS_cad
3R	23149278	3R_23149278_SNP [dm3] 3R_27323556_SNP [dm6]	C	G	1.586e^-4	0.659	INTERGENIC
3L	18617992	3L_18617992_SNP [dm3] 3L_18624892_SNP [dm6]	C	T	1.589e^-4	0.659	DOWNSTREAM bora INTERGENIC	TF binding site mE1_TFBS_sens
3R	16209629	3R_16209629_INS [dm3] 3R_20383907_INS [dm6]	T	TTAATTATTT	1.595e^-4	0.659	INTRON Gfrl
2R	17924042	2R_17924042_SNP [dm3] 2R_22036537_SNP [dm6]	G	T	1.597e^-4	0.659	DOWNSTREAM CG9308 INTRON CG34370
2R	12998788	2R_12998788_SNP [dm3] 2R_17111283_SNP [dm6]	C	T	1.601e^-4	0.659	INTRON CG15611	TF binding site mE1_TFBS_inv
X	5927469	X_5927469_SNP [dm3] X_6033436_SNP [dm6]	T	G	1.609e^-4	0.659	INTERGENIC
3L	9351670	3L_9351670_SNP [dm3] 3L_9358570_SNP [dm6]	G	C	1.612e^-4	0.659	UPSTREAM UGP & 1 other INTRON UGP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	12197395	3L_12197395_SNP [dm3] 3L_12204295_SNP [dm6]	T	A	1.618e^-4	0.659	UTR_3_PRIME CG5626 UPSTREAM Adk1
X	14763121	X_14763121_SNP [dm3] X_14869088_SNP [dm6]	C	T	1.621e^-4	0.659	INTRON Flo2 & 1 other
3L	1996616	3L_1996616_SNP [dm3] 3L_1996616_SNP [dm6]	C	G	1.626e^-4	0.659	INTERGENIC
2R	11993048	2R_11993048_SNP [dm3] 2R_16105543_SNP [dm6]	A	T	1.634e^-4	0.659	INTRON Rho1
X	16021625	X_16021625_SNP [dm3] X_16127592_SNP [dm6]	G	C	1.634e^-4	0.659	INTRON disco-r
3L	18617871	3L_18617871_SNP [dm3] 3L_18624771_SNP [dm6]	T	C	1.637e^-4	0.659	DOWNSTREAM bora INTERGENIC
3L	1996694	3L_1996694_SNP [dm3] 3L_1996694_SNP [dm6]	T	C	1.638e^-4	0.659	INTERGENIC
3R	1322062	3R_1322062_SNP [dm3] 3R_5496340_SNP [dm6]	C	A	1.643e^-4	0.659	INTRON CG31547
3L	12319106	3L_12319106_SNP [dm3] 3L_12326006_SNP [dm6]	C	T	1.644e^-4	0.659	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26128539	3R_26128539_DEL [dm3] 3R_30302817_DEL [dm6]	AAA	CT	1.646e^-4	0.659	INTRON hdc
2L	2206342	2L_2206342_SNP [dm3] 2L_2206342_SNP [dm6]	T	G	1.654e^-4	0.659	UPSTREAM CG31668 DOWNSTREAM CG33124 INTERGENIC
2L	19365535	2L_19365535_SNP [dm3] 2L_19365535_SNP [dm6]	T	A	1.657e^-4	0.659	DOWNSTREAM CG13086 INTERGENIC
X	4420403	X_4420403_SNP [dm3] X_4526370_SNP [dm6]	T	C	1.660e^-4	0.659	INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	14165794	X_14165794_SNP [dm3] X_14271761_SNP [dm6]	A	G	1.662e^-4	0.659	INTRON na	TF binding site mE1_TFBS_chinmo
3L	4539869	3L_4539869_SNP [dm3] 3L_4539869_SNP [dm6]	T	G	1.664e^-4	0.659	NON_SYNONYMOUS_CODING CG32243 DOWNSTREAM CG11353
2L	2302780	2L_2302780_SNP [dm3] 2L_2302780_SNP [dm6]	T	C	1.670e^-4	0.659	INTERGENIC
2R	1141365	2R_1141365_SNP [dm3] 2R_5253860_SNP [dm6]	G	A	1.674e^-4	0.659	UPSTREAM CR41443 INTERGENIC
3L	18617654	3L_18617654_SNP [dm3] 3L_18624554_SNP [dm6]	A	G	1.674e^-4	0.659	UTR_3_PRIME bora
3L	14236823	3L_14236823_SNP [dm3] 3L_14243723_SNP [dm6]	T	A	1.684e^-4	0.659	INTERGENIC
3R	13893806	3R_13893806_DEL [dm3] 3R_18068084_DEL [dm6]	TG	A	1.686e^-4	0.659	INTERGENIC
3R	26878414	3R_26878414_SNP [dm3] 3R_31052692_SNP [dm6]	C	T	1.686e^-4	0.659	UTR_3_PRIME l_3_03670 DOWNSTREAM Aph-4	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9654924	3L_9654924_SNP [dm3] 3L_9661824_SNP [dm6]	A	C	1.692e^-4	0.659	INTRON fry	TF binding site BDTNP1_TFBS_twi
2L	9774277	2L_9774277_SNP [dm3] 2L_9774277_SNP [dm6]	T	G	1.692e^-4	0.659	SYNONYMOUS_CODING ppk11
3R	25262680	3R_25262680_SNP [dm3] 3R_29436958_SNP [dm6]	T	G	1.696e^-4	0.659	INTRON Ptp99A
3R	18392858	3R_18392858_SNP [dm3] 3R_22567136_SNP [dm6]	T	A	1.700e^-4	0.659	INTERGENIC
3R	15760093	3R_15760093_SNP [dm3] 3R_19934371_SNP [dm6]	T	C	1.700e^-4	0.659	SYNONYMOUS_CODING mira INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14040059	3L_14040059_SNP [dm3] 3L_14046959_SNP [dm6]	A	G	1.702e^-4	0.659	SYNONYMOUS_CODING blue	TF binding site mE1_TFBS_cad
3L	9726804	3L_9726804_SNP [dm3] 3L_9733704_SNP [dm6]	T	G	1.704e^-4	0.659	SYNONYMOUS_CODING CG6749 DOWNSTREAM mir-4986 & 1 other EXON mir-4986
3R	13893864	3R_13893864_SNP [dm3] 3R_18068142_SNP [dm6]	C	T	1.706e^-4	0.659	INTERGENIC
2L	6944547	2L_6944547_SNP [dm3] 2L_6944547_SNP [dm6]	T	G	1.708e^-4	0.659	SYNONYMOUS_CODING CG10158 DOWNSTREAM ihog	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25170062	3R_25170062_SNP [dm3] 3R_29344340_SNP [dm6]	C	T	1.710e^-4	0.659	INTERGENIC
2L	4648986	2L_4648986_SNP [dm3] 2L_4648986_SNP [dm6]	G	A	1.716e^-4	0.659	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19435681	2L_19435681_DEL [dm3] 2L_19435681_DEL [dm6]	TGCTT	T	1.718e^-4	0.659	UTR_3_PRIME Rab9 DOWNSTREAM CG10237
3L	15880787	3L_15880787_SNP [dm3] 3L_15887687_SNP [dm6]	T	C	1.718e^-4	0.659	INTRON pHCl
X	14763147	X_14763147_SNP [dm3] X_14869114_SNP [dm6]	T	C	1.730e^-4	0.659	INTRON Flo2 & 1 other
3L	9654603	3L_9654603_DEL [dm3] 3L_9661503_DEL [dm6]	GG	G	1.730e^-4	0.659	INTRON fry	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2439020	2L_2439020_SNP [dm3] 2L_2439020_SNP [dm6]	C	G	1.732e^-4	0.659	INTRON dpp	regulatory region REDfly_CRMs
2L	2439034	2L_2439034_SNP [dm3] 2L_2439034_SNP [dm6]	A	T	1.732e^-4	0.659	INTRON dpp	regulatory region REDfly_CRMs
2R	4548411	2R_4548411_SNP [dm3] 2R_8660906_SNP [dm6]	G	A	1.732e^-4	0.659	SYNONYMOUS_CODING ptc	TF binding site mE1_TFBS_cad
3L	14648193	3L_14648193_SNP [dm3] 3L_14655093_SNP [dm6]	T	C	1.743e^-4	0.659	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16170807	2R_16170807_SNP [dm3] 2R_20283302_SNP [dm6]	G	T	1.744e^-4	0.659	SYNONYMOUS_CODING CG16868	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	14447401	3L_14447401_SNP [dm3] 3L_14454301_SNP [dm6]	G	C	1.744e^-4	0.659	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10294076	2L_10294076_SNP [dm3] 2L_10294076_SNP [dm6]	T	A	1.747e^-4	0.659	INTRON Hand	regulatory region REDfly_CRMs
3L	12817640	3L_12817640_SNP [dm3] 3L_12824540_SNP [dm6]	G	A	1.751e^-4	0.659	UTR_3_PRIME CG42588 DOWNSTREAM CG10960
X	10568569	X_10568569_SNP [dm3] X_10674536_SNP [dm6]	G	C	1.751e^-4	0.659	INTRON X11Lbeta	TF binding site BDTNP1_TFBS_twi
3L	12254687	3L_12254687_DEL [dm3] 3L_12261587_DEL [dm6]	TT	T	1.768e^-4	0.659	INTRON app
X	16911951	X_16911951_SNP [dm3] X_17017918_SNP [dm6]	A	C	1.773e^-4	0.659	INTRON CG45002
X	5712904	X_5712904_SNP [dm3] X_5818871_SNP [dm6]	G	A	1.774e^-4	0.659	UPSTREAM CG15765 INTRON CG15765	TF binding site BDTNP1_TFBS_dl
2L	3648966	2L_3648966_SNP [dm3] 2L_3648966_SNP [dm6]	T	A	1.774e^-4	0.659	INTRON for	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	14840851	3R_14840851_SNP [dm3] 3R_19015129_SNP [dm6]	C	T	1.774e^-4	0.659	INTRON gukh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	9658243	3L_9658243_SNP [dm3] 3L_9665143_SNP [dm6]	A	G	1.778e^-4	0.659	INTRON fry
3R	17784042	3R_17784042_SNP [dm3] 3R_21958320_SNP [dm6]	T	A	1.788e^-4	0.659	INTRON Eip93F
3L	1997949	3L_1997949_SNP [dm3] 3L_1997949_SNP [dm6]	G	C	1.790e^-4	0.659	INTERGENIC
3L	2893885	3L_2893885_SNP [dm3] 3L_2893885_SNP [dm6]	A	T	1.801e^-4	0.659	INTERGENIC
3R	25639571	3R_25639571_SNP [dm3] 3R_29813849_SNP [dm6]	T	G	1.802e^-4	0.659	NON_SYNONYMOUS_CODING ca	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19274277	2L_19274277_DEL [dm3] 2L_19274277_DEL [dm6]	TCGGTG	T	1.807e^-4	0.659	INTERGENIC
3L	8448284	3L_8448284_INS [dm3] 3L_8455184_INS [dm6]	G	GTGGATG	1.813e^-4	0.659	INTRON Gug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	3340541	X_3340541_SNP [dm3] X_3446508_SNP [dm6]	C	T	1.816e^-4	0.659	INTRON CR44999 & 1 other
2L	9776087	2L_9776087_SNP [dm3] 2L_9776087_SNP [dm6]	T	A	1.816e^-4	0.659	INTERGENIC
3R	15225695	3R_15225695_SNP [dm3] 3R_19399973_SNP [dm6]	T	A	1.817e^-4	0.659	INTRON Ino80
2L	3510403	2L_3510403_SNP [dm3] 2L_3510403_SNP [dm6]	G	C	1.818e^-4	0.659	UTR_3_PRIME CG33123 UPSTREAM CG31954 DOWNSTREAM CR45300 & 1 other
2R	3834366	2R_3834366_SNP [dm3] 2R_7946861_SNP [dm6]	G	T	1.819e^-4	0.659	NON_SYNONYMOUS_CODING CG34431 INTRON CG14764	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1999062	3L_1999062_SNP [dm3] 3L_1999062_SNP [dm6]	T	C	1.833e^-4	0.659	INTERGENIC
3L	1997139	3L_1997139_SNP [dm3] 3L_1997139_SNP [dm6]	T	C	1.836e^-4	0.659	INTERGENIC
2L	7957531	2L_7957531_SNP [dm3] 2L_7957531_SNP [dm6]	G	T	1.839e^-4	0.659	INTRON Snoo
3R	27022990	3R_27022990_SNP [dm3] 3R_31197268_SNP [dm6]	A	G	1.843e^-4	0.659	INTRON CG1544	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	6762429	3L_6762429_SNP [dm3] 3L_6769329_SNP [dm6]	A	C	1.843e^-4	0.659	INTERGENIC
2L	8226988	2L_8226988_SNP [dm3] 2L_8226988_SNP [dm6]	G	A	1.843e^-4	0.659	NON_SYNONYMOUS_CODING Pvr INTRON Pvr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	9234440	2R_9234440_SNP [dm3] 2R_13346935_SNP [dm6]	C	T	1.848e^-4	0.659	INTRON CR44206
3R	17923528	3R_17923528_SNP [dm3] 3R_22097806_SNP [dm6]	C	G	1.849e^-4	0.659	INTRON CG5778
2R	9359426	2R_9359426_SNP [dm3] 2R_13471921_SNP [dm6]	G	T	1.849e^-4	0.659	INTRON arr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10215069	X_10215069_SNP [dm3] X_10321036_SNP [dm6]	C	T	1.851e^-4	0.659	INTRON alpha-Man-I
3L	4309368	3L_4309368_SNP [dm3] 3L_4309368_SNP [dm6]	G	C	1.857e^-4	0.659	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	18674262	X_18674262_SNP [dm3] X_18780229_SNP [dm6]	T	C	1.858e^-4	0.659	INTRON CG6891
2L	7096516	2L_7096516_SNP [dm3] 2L_7096516_SNP [dm6]	C	T	1.859e^-4	0.659	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
2L	10845051	2L_10845051_SNP [dm3] 2L_10845051_SNP [dm6]	A	G	1.859e^-4	0.659	UPSTREAM CG17140 DOWNSTREAM Porin2 INTRON CG17139 & 1 other
2R	12580954	2R_12580954_SNP [dm3] 2R_16693449_SNP [dm6]	A	G	1.868e^-4	0.659	SYNONYMOUS_CODING CG5210 INTRON CG30463	TF binding site mE1_TFBS_cad
2R	12010988	2R_12010988_SNP [dm3] 2R_16123483_SNP [dm6]	A	C	1.872e^-4	0.659	UPSTREAM CG30095 DOWNSTREAM Jhe INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	15759517	3R_15759517_SNP [dm3] 3R_19933795_SNP [dm6]	G	A	1.877e^-4	0.659	SYNONYMOUS_CODING mira INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12213334	3L_12213334_SNP [dm3] 3L_12220234_SNP [dm6]	G	C	1.878e^-4	0.659	UTR_5_PRIME app
3L	6735678	3L_6735678_DEL [dm3] 3L_6742578_DEL [dm6]	TT	T	1.880e^-4	0.659	INTRON dikar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	17283238	3L_17283238_SNP [dm3] 3L_17290138_SNP [dm6]	T	A	1.886e^-4	0.659	INTERGENIC
3L	5190268	3L_5190268_SNP [dm3] 3L_5197168_SNP [dm6]	C	G	1.888e^-4	0.659	INTRON shep
X	17205995	X_17205995_SNP [dm3] X_17311962_SNP [dm6]	G	T	1.888e^-4	0.659	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
X	7058134	X_7058134_SNP [dm3] X_7164101_SNP [dm6]	A	G	1.890e^-4	0.659	INTRON CG9650	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	13703158	2L_13703158_SNP [dm3] 2L_13703158_SNP [dm6]	A	G	1.892e^-4	0.659	INTRON CG31814
3R	25582080	3R_25582080_SNP [dm3] 3R_29756358_SNP [dm6]	T	A	1.897e^-4	0.659	INTRON CR44953
X	14646734	X_14646734_SNP [dm3] X_14752701_SNP [dm6]	C	T	1.901e^-4	0.659	INTERGENIC
3L	7389329	3L_7389329_SNP [dm3] 3L_7396229_SNP [dm6]	C	T	1.906e^-4	0.659	UPSTREAM CG32379 DOWNSTREAM CG8563 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	13613294	2L_13613294_SNP [dm3] 2L_13613294_SNP [dm6]	A	T	1.906e^-4	0.659	INTRON kuz
3R	14842481	3R_14842481_SNP [dm3] 3R_19016759_SNP [dm6]	T	C	1.923e^-4	0.659	NON_SYNONYMOUS_CODING gukh INTRON gukh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	26874892	3R_26874892_SNP [dm3] 3R_31049170_SNP [dm6]	G	C	1.929e^-4	0.659	NON_SYNONYMOUS_CODING Aph-4 UPSTREAM Aph-4
X	3048112	X_3048112_SNP [dm3] X_3154079_SNP [dm6]	G	T	1.930e^-4	0.659	INTRON N	TF binding site BDTNP1_TFBS_da
3L	14040053	3L_14040053_SNP [dm3] 3L_14046953_SNP [dm6]	C	T	1.932e^-4	0.659	SYNONYMOUS_CODING blue	TF binding site mE1_TFBS_cad
3R	14858200	3R_14858200_SNP [dm3] 3R_19032478_SNP [dm6]	T	G	1.935e^-4	0.659	DOWNSTREAM CG6013 INTERGENIC
2L	7049216	2L_7049216_SNP [dm3] 2L_7049216_SNP [dm6]	G	C	1.938e^-4	0.659	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2L	2344735	2L_2344735_SNP [dm3] 2L_2344735_SNP [dm6]	A	T	1.940e^-4	0.659	INTRON CG9967 & 1 other
3L	18563984	3L_18563984_SNP [dm3] 3L_18570884_SNP [dm6]	C	T	1.942e^-4	0.659	INTRON AstC-R1
3L	6928456	3L_6928456_SNP [dm3] 3L_6935356_SNP [dm6]	A	G	1.943e^-4	0.659	DOWNSTREAM CR45415 & 1 other INTERGENIC
3R	7891768	3R_7891768_SNP [dm3] 3R_12066046_SNP [dm6]	G	A	1.946e^-4	0.659	INTERGENIC
2R	15430664	2R_15430664_SNP [dm3] 2R_19543159_SNP [dm6]	G	C	1.948e^-4	0.659	INTRON sm	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
3L	4083000	3L_4083000_SNP [dm3] 3L_4083000_SNP [dm6]	C	T	1.949e^-4	0.659	INTRON Gad1
X	18684336	X_18684336_SNP [dm3] X_18790303_SNP [dm6]	A	G	1.954e^-4	0.659	UTR_5_PRIME Pk17E INTRON Pk17E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	4600612	3L_4600612_SNP [dm3] 3L_4600612_SNP [dm6]	C	T	1.964e^-4	0.659	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9496549	2R_9496549_SNP [dm3] 2R_13609044_SNP [dm6]	A	G	1.964e^-4	0.659	NON_SYNONYMOUS_CODING CG12464
3L	6736715	3L_6736715_SNP [dm3] 3L_6743615_SNP [dm6]	A	G	1.968e^-4	0.659	UPSTREAM dikar DOWNSTREAM velo INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_ttk
2R	12010102	2R_12010102_SNP [dm3] 2R_16122597_SNP [dm6]	A	G	1.975e^-4	0.659	SYNONYMOUS_CODING Jhe UPSTREAM CG30095
3L	20492831	3L_20492831_DEL [dm3] 3L_20499731_DEL [dm6]	TG	C	1.976e^-4	0.659	UPSTREAM CG18281 INTRON CG32425
2L	13117277	2L_13117277_SNP [dm3] 2L_13117277_SNP [dm6]	A	C	1.981e^-4	0.659	INTERGENIC
3L	7989027	3L_7989027_SNP [dm3] 3L_7995927_SNP [dm6]	G	C	1.983e^-4	0.659	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	3645772	3R_3645772_SNP [dm3] 3R_7820050_SNP [dm6]	A	G	1.983e^-4	0.659	INTRON CG34384
X	20879603	X_20879603_SNP [dm3] X_21008576_SNP [dm6]	G	C	1.987e^-4	0.659	INTERGENIC
X	18382068	X_18382068_SNP [dm3] X_18488035_SNP [dm6]	C	G	1.992e^-4	0.659	INTRON CG15046	TF binding site mE1_TFBS_chinmo
3L	14834405	3L_14834405_SNP [dm3] 3L_14841305_SNP [dm6]	A	G	1.994e^-4	0.659	INTRON CG17839
3R	13965223	3R_13965223_SNP [dm3] 3R_18139501_SNP [dm6]	A	G	2.000e^-4	0.659	INTERGENIC
3L	13745955	3L_13745955_SNP [dm3] 3L_13752855_SNP [dm6]	T	C	2.001e^-4	0.659	INTRON bru-3
3R	1295688	3R_1295688_SNP [dm3] 3R_5469966_SNP [dm6]	A	G	2.001e^-4	0.659	SYNONYMOUS_CODING mRpL44 UPSTREAM Snr1 DOWNSTREAM CG12162	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	6999623	2L_6999623_SNP [dm3] 2L_6999623_SNP [dm6]	T	C	2.005e^-4	0.659	INTRON uif
3R	25388769	3R_25388769_DEL [dm3] 3R_29563047_DEL [dm6]	TTGCAG	C	2.005e^-4	0.659	INTRON Dr
3R	14842086	3R_14842086_SNP [dm3] 3R_19016364_SNP [dm6]	A	T	2.007e^-4	0.659	SYNONYMOUS_CODING gukh INTRON gukh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2R	13708297	2R_13708297_SNP [dm3] 2R_17820792_SNP [dm6]	C	G	2.009e^-4	0.659	INTRON grh	transposable element FlyBase
X	3747204	X_3747204_SNP [dm3] X_3853171_SNP [dm6]	C	T	2.013e^-4	0.659	SYNONYMOUS_CODING ec	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	7059195	2L_7059195_SNP [dm3] 2L_7059195_SNP [dm6]	G	C	2.032e^-4	0.659	NON_SYNONYMOUS_CODING Mnn1 DOWNSTREAM CG31907	TF binding site mE1_TFBS_cad
X	11074118	X_11074118_SNP [dm3] X_11180085_SNP [dm6]	A	G	2.039e^-4	0.659	INTERGENIC
3L	8073044	3L_8073044_SNP [dm3] 3L_8079944_SNP [dm6]	C	T	2.044e^-4	0.659	INTRON Ect4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	2290827	2L_2290827_SNP [dm3] 2L_2290827_SNP [dm6]	C	T	2.045e^-4	0.659	UPSTREAM robl22E INTERGENIC
3R	18607594	3R_18607594_SNP [dm3] 3R_22781872_SNP [dm6]	C	T	2.048e^-4	0.659	UTR_5_PRIME CG7029 UPSTREAM CR43654 INTRON CG7029	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	10958382	2L_10958382_SNP [dm3] 2L_10958382_SNP [dm6]	A	T	2.052e^-4	0.659	INTRON dpr2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9203420	2R_9203420_SNP [dm3] 2R_13315915_SNP [dm6]	T	C	2.056e^-4	0.659	INTERGENIC
3R	16315875	3R_16315875_SNP [dm3] 3R_20490153_SNP [dm6]	A	G	2.056e^-4	0.659	INTERGENIC	TF binding site mE1_TFBS_sbb
3R	6832690	3R_6832690_SNP [dm3] 3R_11006968_SNP [dm6]	A	T	2.059e^-4	0.659	INTRON CG34114	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	9745010	3L_9745010_SNP [dm3] 3L_9751910_SNP [dm6]	C	T	2.063e^-4	0.659	UPSTREAM CG42268 INTRON CG42268	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	14450344	2R_14450344_SNP [dm3] 2R_18562839_SNP [dm6]	C	T	2.074e^-4	0.659	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17446428	2R_17446428_SNP [dm3] 2R_21558923_SNP [dm6]	G	A	2.077e^-4	0.659	SYNONYMOUS_CODING Egfr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	14581471	3L_14581471_SNP [dm3] 3L_14588371_SNP [dm6]	A	G	2.078e^-4	0.659	INTRON HGTX
X	17178520	X_17178520_SNP [dm3] X_17284487_SNP [dm6]	A	G	2.085e^-4	0.659	UTR_5_PRIME CG8661 INTRON CG5445
3L	2045569	3L_2045569_SNP [dm3] 3L_2045569_SNP [dm6]	A	G	2.091e^-4	0.659	SYNONYMOUS_CODING sls INTRON sls
X	2807716	X_2807716_SNP [dm3] X_2913683_SNP [dm6]	T	C	2.092e^-4	0.659	INTRON kirre
3L	3497415	3L_3497415_SNP [dm3] 3L_3497415_SNP [dm6]	C	T	2.095e^-4	0.659	INTRON CG42324
X	14762917	X_14762917_SNP [dm3] X_14868884_SNP [dm6]	G	T	2.097e^-4	0.659	INTRON Flo2 & 1 other
3L	10195627	3L_10195627_SNP [dm3] 3L_10202527_SNP [dm6]	T	G	2.099e^-4	0.659	UPSTREAM ect INTERGENIC
3R	3755154	3R_3755154_SNP [dm3] 3R_7929432_SNP [dm6]	G	A	2.104e^-4	0.659	INTRON dsx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	17732436	3L_17732436_SNP [dm3] 3L_17739336_SNP [dm6]	G	A	2.105e^-4	0.659	INTRON Ccn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15857006	3R_15857006_SNP [dm3] 3R_20031284_SNP [dm6]	C	T	2.105e^-4	0.659	START_GAINED trem UTR_5_PRIME trem UPSTREAM CG4936	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
X	19163499	X_19163499_SNP [dm3] X_19269466_SNP [dm6]	T	C	2.105e^-4	0.659	UPSTREAM CG8010 INTRON Vav	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	7059241	2L_7059241_SNP [dm3] 2L_7059241_SNP [dm6]	C	G	2.107e^-4	0.659	NON_SYNONYMOUS_CODING Mnn1 UTR_3_PRIME CG31907 DOWNSTREAM CG31907 INTRON Mnn1	TF binding site mE1_TFBS_cad
2L	19290691	2L_19290691_SNP [dm3] 2L_19290691_SNP [dm6]	G	A	2.113e^-4	0.659	INTERGENIC
3R	13877765	3R_13877765_SNP [dm3] 3R_18052043_SNP [dm6]	A	C	2.122e^-4	0.659	INTRON htl	TF binding site mE1_TFBS_inv
2L	12521930	2L_12521930_SNP [dm3] 2L_12521930_SNP [dm6]	A	T	2.125e^-4	0.659	INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	25573993	3R_25573993_SNP [dm3] 3R_29748271_SNP [dm6]	G	C	2.125e^-4	0.659	SYNONYMOUS_CODING ATPsyn-gamma UPSTREAM yata DOWNSTREAM IntS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8612126	2L_8612126_SNP [dm3] 2L_8612126_SNP [dm6]	G	A	2.126e^-4	0.659	INTRON Sema-1a
3L	6639830	3L_6639830_SNP [dm3] 3L_6646730_SNP [dm6]	T	A	2.127e^-4	0.659	INTERGENIC
2R	18358437	2R_18358437_DEL [dm3] 2R_22470932_DEL [dm6]	GGCCTACTTCTAAAAG...	G	2.128e^-4	0.659	INTRON CG10384	TF binding site mE1_TFBS_chinmo
3R	18932685	3R_18932685_SNP [dm3] 3R_23106963_SNP [dm6]	A	G	2.135e^-4	0.659	INTRON CG13830
3L	8639351	3L_8639351_SNP [dm3] 3L_8646251_SNP [dm6]	A	G	2.137e^-4	0.659	SYNONYMOUS_CODING CG13305 UPSTREAM Pex7	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	1279608	3R_1279608_SNP [dm3] 3R_5453886_SNP [dm6]	A	C	2.139e^-4	0.659	INTRON CG14669
3R	1193486	3R_1193486_SNP [dm3] 3R_5367764_SNP [dm6]	A	G	2.141e^-4	0.659	UPSTREAM CR44103 INTRON Cerk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	2773732	3L_2773732_SNP [dm3] 3L_2773732_SNP [dm6]	C	A	2.148e^-4	0.659	SYNONYMOUS_CODING CG12093 UPSTREAM Atg2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	9201997	2R_9201997_SNP [dm3] 2R_13314492_SNP [dm6]	C	T	2.150e^-4	0.659	INTERGENIC
3L	5190510	3L_5190510_SNP [dm3] 3L_5197410_SNP [dm6]	T	A	2.154e^-4	0.659	INTRON shep
3L	5190511	3L_5190511_SNP [dm3] 3L_5197411_SNP [dm6]	T	A	2.154e^-4	0.659	INTRON shep
X	18679670	X_18679670_INS [dm3] X_18785637_INS [dm6]	C	CGCTC	2.156e^-4	0.659	UPSTREAM CR6900 DOWNSTREAM CG6961 INTERGENIC	transposable element FlyBase
X	18679673	X_18679673_SNP [dm3] X_18785640_SNP [dm6]	G	C	2.156e^-4	0.659	UPSTREAM CR6900 DOWNSTREAM CG6961 INTERGENIC	transposable element FlyBase
3R	26490513	3R_26490513_SNP [dm3] 3R_30664791_SNP [dm6]	C	A	2.159e^-4	0.659	EXON CR45191
X	12195833	X_12195833_SNP [dm3] X_12301800_SNP [dm6]	A	C	2.160e^-4	0.659	INTRON Ten-a
3R	8543951	3R_8543951_SNP [dm3] 3R_12718229_SNP [dm6]	C	G	2.172e^-4	0.659	INTRON Men
X	4838207	X_4838207_SNP [dm3] X_4944174_SNP [dm6]	G	T	2.172e^-4	0.659	INTRON Ptp4E
3L	18280305	3L_18280305_SNP [dm3] 3L_18287205_SNP [dm6]	C	A	2.177e^-4	0.659	INTERGENIC
3L	7715660	3L_7715660_SNP [dm3] 3L_7722560_SNP [dm6]	G	A	2.182e^-4	0.659	SYNONYMOUS_CODING CG7457 INTRON CG32373
2L	10790313	2L_10790313_SNP [dm3] 2L_10790313_SNP [dm6]	A	G	2.191e^-4	0.659	START_GAINED CG31870 UTR_5_PRIME CG31870 INTRON CG31869
2R	16961070	2R_16961070_SNP [dm3] 2R_21073565_SNP [dm6]	A	G	2.194e^-4	0.659	UPSTREAM CG10527 & 1 other INTERGENIC
3R	16220447	3R_16220447_SNP [dm3] 3R_20394725_SNP [dm6]	T	C	2.202e^-4	0.659	INTRON Gfrl
3R	15759963	3R_15759963_SNP [dm3] 3R_19934241_SNP [dm6]	G	A	2.209e^-4	0.659	SYNONYMOUS_CODING mira INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	13823534	2L_13823534_SNP [dm3] 2L_13823534_SNP [dm6]	T	C	2.216e^-4	0.659	SYNONYMOUS_CODING b DOWNSTREAM tam	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	17829041	3L_17829041_SNP [dm3] 3L_17835941_SNP [dm6]	G	A	2.221e^-4	0.659	UPSTREAM CG32189 INTRON Grd	transposable element FlyBase
2L	9777559	2L_9777559_SNP [dm3] 2L_9777559_SNP [dm6]	C	T	2.222e^-4	0.659	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	5987538	2L_5987538_SNP [dm3] 2L_5987538_SNP [dm6]	A	T	2.222e^-4	0.659	INTRON ifc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8984217	2L_8984217_SNP [dm3] 2L_8984217_SNP [dm6]	C	G	2.228e^-4	0.659	INTRON CG13101	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8984218	2L_8984218_SNP [dm3] 2L_8984218_SNP [dm6]	T	A	2.228e^-4	0.659	INTRON CG13101	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16207027	2R_16207027_SNP [dm3] 2R_20319522_SNP [dm6]	C	T	2.230e^-4	0.659	UPSTREAM CG8920 DOWNSTREAM CG13871 INTRON CG8920	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	20137680	3L_20137680_SNP [dm3] 3L_20144580_SNP [dm6]	A	G	2.230e^-4	0.659	INTERGENIC
3L	7031462	3L_7031462_SNP [dm3] 3L_7038362_SNP [dm6]	G	A	2.231e^-4	0.659	INTRON Mp
2L	19572836	2L_19572836_SNP [dm3] 2L_19572836_SNP [dm6]	A	T	2.233e^-4	0.659	UPSTREAM spi INTRON spi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	9773054	2L_9773054_SNP [dm3] 2L_9773054_SNP [dm6]	G	A	2.238e^-4	0.659	UPSTREAM ppk16 DOWNSTREAM ppk11 INTERGENIC
3L	6735834	3L_6735834_SNP [dm3] 3L_6742734_SNP [dm6]	G	C	2.238e^-4	0.659	UTR_5_PRIME dikar INTRON dikar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	18569372	2R_18569372_SNP [dm3] 2R_22681867_SNP [dm6]	C	A	2.240e^-4	0.659	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	6796175	3R_6796175_SNP [dm3] 3R_10970453_SNP [dm6]	T	A	2.240e^-4	0.659	DOWNSTREAM CR45561 INTERGENIC
3L	3836190	3L_3836190_SNP [dm3] 3L_3836190_SNP [dm6]	A	G	2.243e^-4	0.659	SYNONYMOUS_CODING enc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	2223197	3R_2223197_SNP [dm3] 3R_6397475_SNP [dm6]	A	G	2.244e^-4	0.659	INTRON Dmtn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16860837	X_16860837_SNP [dm3] X_16966804_SNP [dm6]	A	G	2.245e^-4	0.659	INTRON CG9086	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
X	11046272	X_11046272_SNP [dm3] X_11152239_SNP [dm6]	A	G	2.253e^-4	0.659	SPLICE_SITE_REGION Lint-1 SYNONYMOUS_CODING Lint-1 DOWNSTREAM rtv
3L	12816748	3L_12816748_SNP [dm3] 3L_12823648_SNP [dm6]	G	T	2.256e^-4	0.659	NON_SYNONYMOUS_CODING CG42588
3L	12817064	3L_12817064_SNP [dm3] 3L_12823964_SNP [dm6]	A	C	2.256e^-4	0.659	DOWNSTREAM CG10960 INTRON CG42588
2L	6959098	2L_6959098_SNP [dm3] 2L_6959098_SNP [dm6]	T	A	2.266e^-4	0.659	UTR_3_PRIME CG3430 DOWNSTREAM Atac1
X	10567464	X_10567464_SNP [dm3] X_10673431_SNP [dm6]	T	A	2.266e^-4	0.659	UTR_5_PRIME CG12637 INTRON X11Lbeta	TF binding site BDTNP1_TFBS_twi
3R	1297119	3R_1297119_SNP [dm3] 3R_5471397_SNP [dm6]	T	C	2.271e^-4	0.659	UPSTREAM mRpL44 INTRON Snr1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	3262564	3L_3262564_SNP [dm3] 3L_3262564_SNP [dm6]	T	A	2.272e^-4	0.659	INTRON ckd
2R	12581186	2R_12581186_SNP [dm3] 2R_16693681_SNP [dm6]	G	A	2.273e^-4	0.659	UTR_3_PRIME CG5210 INTRON CG30463	TF binding site mE1_TFBS_cad
3L	5190497	3L_5190497_INS [dm3] 3L_5197397_INS [dm6]	A	AA	2.291e^-4	0.659	INTRON shep
2L	4650574	2L_4650574_SNP [dm3] 2L_4650574_SNP [dm6]	G	A	2.293e^-4	0.659	UPSTREAM CG3355 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	16861279	X_16861279_SNP [dm3] X_16967246_SNP [dm6]	C	T	2.294e^-4	0.659	INTRON CG9086	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2L	8983903	2L_8983903_DEL [dm3] 2L_8983903_DEL [dm6]	CTT	C	2.298e^-4	0.659	UTR_5_PRIME CG13101
3L	9811676	3L_9811676_INS [dm3] 3L_9818576_INS [dm6]	T	TC	2.304e^-4	0.659	UPSTREAM CG43897 INTRON CG43897	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	18617759	3L_18617759_SNP [dm3] 3L_18624659_SNP [dm6]	G	A	2.307e^-4	0.659	UTR_3_PRIME bora
2R	15404926	2R_15404926_INS [dm3] 2R_19517421_INS [dm6]	G	GCTAAAG	2.309e^-4	0.659	DOWNSTREAM sm INTERGENIC
2R	6180958	2R_6180958_SNP [dm3] 2R_10293453_SNP [dm6]	A	T	2.319e^-4	0.659	INTRON CAP
2L	1544343	2L_1544343_SNP [dm3] 2L_1544343_SNP [dm6]	A	G	2.320e^-4	0.659	INTERGENIC
2L	19365532	2L_19365532_SNP [dm3] 2L_19365532_SNP [dm6]	T	G	2.324e^-4	0.659	DOWNSTREAM CG13086 INTERGENIC
3L	5190524	3L_5190524_SNP [dm3] 3L_5197424_SNP [dm6]	T	G	2.326e^-4	0.659	INTRON shep
3L	5190562	3L_5190562_SNP [dm3] 3L_5197462_SNP [dm6]	T	A	2.338e^-4	0.659	INTRON shep
2L	19572534	2L_19572534_DEL [dm3] 2L_19572534_DEL [dm6]	GGG	G	2.345e^-4	0.659	UTR_5_PRIME spi INTRON spi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl mE1_TFBS_zfh1
3L	1999980	3L_1999980_SNP [dm3] 3L_1999980_SNP [dm6]	A	C	2.345e^-4	0.659	INTERGENIC
2R	3877620	2R_3877620_SNP [dm3] 2R_7990115_SNP [dm6]	C	T	2.356e^-4	0.659	UPSTREAM ACC INTRON ACC & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	8022995	X_8022995_SNP [dm3] X_8128962_SNP [dm6]	A	G	2.359e^-4	0.659	UTR_5_PRIME cyr UPSTREAM CG2116 INTRON cyr	TF binding site BDTNP1_TFBS_dl
2L	9159603	2L_9159603_SNP [dm3] 2L_9159603_SNP [dm6]	T	G	2.360e^-4	0.659	INTRON CG32982
X	13156761	X_13156761_SNP [dm3] X_13262728_SNP [dm6]	A	G	2.362e^-4	0.659	UTR_3_PRIME HDAC4 DOWNSTREAM HDAC4 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	17614645	2L_17614645_SNP [dm3] 2L_17614645_SNP [dm6]	A	T	2.371e^-4	0.659	INTERGENIC
2R	17924140	2R_17924140_DEL [dm3] 2R_22036635_DEL [dm6]	CGAGCCTCAATTA...	C	2.372e^-4	0.659	DOWNSTREAM CG9308 INTRON CG34370
2L	12029297	2L_12029297_SNP [dm3] 2L_12029297_SNP [dm6]	T	G	2.372e^-4	0.659	INTRON dmGlut	TF binding site mE1_TFBS_cad
2R	3658441	2R_3658441_SNP [dm3] 2R_7770936_SNP [dm6]	A	C	2.379e^-4	0.659	INTRON CG30497 & 1 other
3L	1924790	3L_1924790_SNP [dm3] 3L_1924790_SNP [dm6]	C	T	2.386e^-4	0.659	SYNONYMOUS_CODING Dbx UPSTREAM tRNA:CR32312	TF binding site mE1_TFBS_chinmo
3L	7388495	3L_7388495_SNP [dm3] 3L_7395395_SNP [dm6]	T	G	2.395e^-4	0.659	UPSTREAM CG32379 INTRON CG8563
X	6476394	X_6476394_SNP [dm3] X_6582361_SNP [dm6]	G	C	2.396e^-4	0.659	SYNONYMOUS_CODING CG34417 INTRON CG34417
3L	14544768	3L_14544768_SNP [dm3] 3L_14551668_SNP [dm6]	C	A	2.399e^-4	0.659	UPSTREAM CG9238 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	5190281	3L_5190281_DEL [dm3] 3L_5197181_DEL [dm6]	CTGGC	C	2.401e^-4	0.659	INTRON shep
X	13683486	X_13683486_SNP [dm3] X_13789453_SNP [dm6]	T	C	2.413e^-4	0.659	DOWNSTREAM CG10993 INTRON inaE
2R	8189166	2R_8189166_SNP [dm3] 2R_12301661_SNP [dm6]	C	T	2.415e^-4	0.659	DOWNSTREAM CG42700 & 1 other INTRON CG8850
2L	19271672	2L_19271672_SNP [dm3] 2L_19271672_SNP [dm6]	T	A	2.415e^-4	0.659	EXON CR44190
2L	1213245	2L_1213245_SNP [dm3] 2L_1213245_SNP [dm6]	G	A	2.417e^-4	0.659	INTERGENIC
3L	16761746	3L_16761746_SNP [dm3] 3L_16768646_SNP [dm6]	G	A	2.417e^-4	0.659	INTRON Nrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	3877505	2R_3877505_SNP [dm3] 2R_7990000_SNP [dm6]	C	T	2.420e^-4	0.659	SYNONYMOUS_CODING Nup44A UPSTREAM ACC INTRON ACC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	16529566	2L_16529566_SNP [dm3] 2L_16529566_SNP [dm6]	T	C	2.421e^-4	0.659	UPSTREAM snoRNA:Me28S-C1237 INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc
2L	16584122	2L_16584122_SNP [dm3] 2L_16584122_SNP [dm6]	C	T	2.425e^-4	0.659	INTRON CG42389
X	9395526	X_9395526_SNP [dm3] X_9501493_SNP [dm6]	T	G	2.442e^-4	0.659	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	1996361	3L_1996361_SNP [dm3] 3L_1996361_SNP [dm6]	G	C	2.445e^-4	0.659	INTERGENIC
2L	20018443	2L_20018443_SNP [dm3] 2L_20018443_SNP [dm6]	C	G	2.446e^-4	0.659	INTERGENIC
3R	21196943	3R_21196943_SNP [dm3] 3R_25371221_SNP [dm6]	A	G	2.454e^-4	0.659	INTRON Fur1
3L	12522462	3L_12522462_SNP [dm3] 3L_12529362_SNP [dm6]	T	C	2.455e^-4	0.659	INTRON nst	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9780032	2L_9780032_SNP [dm3] 2L_9780032_SNP [dm6]	T	G	2.457e^-4	0.659	INTERGENIC
3L	14539132	3L_14539132_SNP [dm3] 3L_14546032_SNP [dm6]	C	T	2.458e^-4	0.659	INTRON CG9238	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21486375	3R_21486375_SNP [dm3] 3R_25660653_SNP [dm6]	A	C	2.461e^-4	0.659	SYNONYMOUS_CODING Tnks	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6021972	2L_6021972_SNP [dm3] 2L_6021972_SNP [dm6]	G	C	2.462e^-4	0.659	DOWNSTREAM CG13996 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18675757	X_18675757_SNP [dm3] X_18781724_SNP [dm6]	G	T	2.462e^-4	0.659	UTR_3_PRIME CG18259 DOWNSTREAM CG6891	TF binding site mE1_TFBS_h mE1_TFBS_HSA
2R	9203443	2R_9203443_SNP [dm3] 2R_13315938_SNP [dm6]	A	C	2.463e^-4	0.659	INTERGENIC
X	2407653	X_2407653_SNP [dm3] X_2513620_SNP [dm6]	C	T	2.465e^-4	0.659	INTRON trol
2L	18741542	2L_18741542_SNP [dm3] 2L_18741542_SNP [dm6]	G	C	2.465e^-4	0.659	DOWNSTREAM CG15167 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	3903183	2R_3903183_SNP [dm3] 2R_8015678_SNP [dm6]	T	G	2.474e^-4	0.659	DOWNSTREAM mir-4981 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	2302102	2L_2302102_SNP [dm3] 2L_2302102_SNP [dm6]	G	C	2.475e^-4	0.659	INTERGENIC
2L	15013905	2L_15013905_SNP [dm3] 2L_15013905_SNP [dm6]	T	C	2.480e^-4	0.659	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12805363	3L_12805363_SNP [dm3] 3L_12812263_SNP [dm6]	A	C	2.482e^-4	0.659	DOWNSTREAM CG10754 INTRON Sap130	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	15697677	3R_15697677_SNP [dm3] 3R_19871955_SNP [dm6]	T	C	2.484e^-4	0.659	SYNONYMOUS_CODING CG4562	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	14544792	3L_14544792_SNP [dm3] 3L_14551692_SNP [dm6]	G	A	2.490e^-4	0.659	UPSTREAM CG9238 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	9201730	2R_9201730_SNP [dm3] 2R_13314225_SNP [dm6]	T	C	2.494e^-4	0.659	INTERGENIC
X	20879314	X_20879314_SNP [dm3] X_21008287_SNP [dm6]	T	A	2.502e^-4	0.659	INTERGENIC
2R	10264751	2R_10264751_SNP [dm3] 2R_14377246_SNP [dm6]	G	C	2.503e^-4	0.659	UPSTREAM Dh44-R1 DOWNSTREAM CG30075 INTERGENIC
2L	16864972	2L_16864972_SNP [dm3] 2L_16864972_SNP [dm6]	G	A	2.508e^-4	0.659	INTERGENIC
X	2758563	X_2758563_SNP [dm3] X_2864530_SNP [dm6]	T	C	2.511e^-4	0.659	INTRON kirre
X	14763129	X_14763129_DEL [dm3] X_14869096_DEL [dm6]	AA	A	2.525e^-4	0.659	INTRON Flo2 & 1 other
3R	24581286	3R_24581286_DEL [dm3] 3R_28755564_DEL [dm6]	ATTATTATTA	A	2.527e^-4	0.659	UTR_3_PRIME CG9997 DOWNSTREAM CG9997
3L	17829412	3L_17829412_SNP [dm3] 3L_17836312_SNP [dm6]	C	T	2.532e^-4	0.659	INTRON Grd
3L	2749819	3L_2749819_SNP [dm3] 3L_2749819_SNP [dm6]	G	A	2.532e^-4	0.659	INTRON Mrtf
2L	16584162	2L_16584162_SNP [dm3] 2L_16584162_SNP [dm6]	C	G	2.532e^-4	0.659	INTRON CG42389
2L	2061957	2L_2061957_SNP [dm3] 2L_2061957_SNP [dm6]	G	A	2.538e^-4	0.659	INTRON dpr3	TF binding site mE1_TFBS_chinmo
3R	1264677	3R_1264677_SNP [dm3] 3R_5438955_SNP [dm6]	A	G	2.540e^-4	0.659	INTRON CG14669	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
X	4105641	X_4105641_INS [dm3] X_4211608_INS [dm6]	A	AGCA	2.544e^-4	0.659	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3952898	X_3952898_SNP [dm3] X_4058865_SNP [dm6]	G	A	2.546e^-4	0.659	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	4979196	3L_4979196_SNP [dm3] 3L_4979196_SNP [dm6]	G	A	2.549e^-4	0.659	DOWNSTREAM CG17030 INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6734245	2L_6734245_SNP [dm3] 2L_6734245_SNP [dm6]	T	C	2.555e^-4	0.659	SYNONYMOUS_CODING TTLL3B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12469398	2L_12469398_SNP [dm3] 2L_12469398_SNP [dm6]	C	G	2.563e^-4	0.659	INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2322039	2L_2322039_DEL [dm3] 2L_2322039_DEL [dm6]	ACGAATA	A	2.564e^-4	0.659	INTRON CG9967 & 1 other
3R	3779617	3R_3779617_DEL [dm3] 3R_7953895_DEL [dm6]	TTAAAAG	T	2.573e^-4	0.659	INTRON dsx
2R	15430733	2R_15430733_SNP [dm3] 2R_19543228_SNP [dm6]	C	A	2.575e^-4	0.659	INTRON sm	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
3R	1325314	3R_1325314_SNP [dm3] 3R_5499592_SNP [dm6]	C	A	2.576e^-4	0.659	UPSTREAM CG31547 INTRON CG31547
3R	26782268	3R_26782268_SNP [dm3] 3R_30956546_SNP [dm6]	A	T	2.579e^-4	0.659	INTERGENIC
2L	2334787	2L_2334787_SNP [dm3] 2L_2334787_SNP [dm6]	G	A	2.583e^-4	0.659	INTRON CG9967 & 1 other
3R	1192920	3R_1192920_DEL [dm3] 3R_5367198_DEL [dm6]	CTACAAAATATTATAAATAA...	C	2.584e^-4	0.659	INTRON Cerk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	12877050	X_12877050_SNP [dm3] X_12983017_SNP [dm6]	G	A	2.589e^-4	0.659	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25169893	3R_25169893_SNP [dm3] 3R_29344171_SNP [dm6]	C	G	2.596e^-4	0.659	INTERGENIC
2L	19365534	2L_19365534_SNP [dm3] 2L_19365534_SNP [dm6]	A	G	2.606e^-4	0.659	DOWNSTREAM CG13086 INTERGENIC
X	14165663	X_14165663_SNP [dm3] X_14271630_SNP [dm6]	A	G	2.616e^-4	0.659	SYNONYMOUS_CODING na	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16126447	2R_16126447_SNP [dm3] 2R_20238942_SNP [dm6]	A	G	2.618e^-4	0.659	SYNONYMOUS_CODING CG13869 UTR_3_PRIME CG11099 UPSTREAM Efhc1.2
2R	16327784	2R_16327784_SNP [dm3] 2R_20440279_SNP [dm6]	T	A	2.633e^-4	0.659	INTRON CG12484	TF binding site mE1_TFBS_inv
3L	8408217	3L_8408217_SNP [dm3] 3L_8415117_SNP [dm6]	A	C	2.637e^-4	0.659	DOWNSTREAM CG32354 INTRON Exo70
3L	18452164	3L_18452164_SNP [dm3] 3L_18459064_SNP [dm6]	A	T	2.640e^-4	0.659	DOWNSTREAM CG32196 INTERGENIC
3L	21402673	3L_21402673_SNP [dm3] 3L_21409573_SNP [dm6]	G	A	2.643e^-4	0.659	INTRON rgn
3R	6796074	3R_6796074_DEL [dm3] 3R_10970352_DEL [dm6]	AAAC	A	2.656e^-4	0.659	DOWNSTREAM CR45561 INTERGENIC
2R	7784170	2R_7784170_SNP [dm3] 2R_11896665_SNP [dm6]	G	A	2.664e^-4	0.659	SYNONYMOUS_CODING MCPH1 DOWNSTREAM Ef1alpha48D & 1 other
X	7280558	X_7280558_SNP [dm3] X_7386525_SNP [dm6]	A	C	2.665e^-4	0.659	INTRON CG1677 & 1 other
3R	3702016	3R_3702016_INS [dm3] 3R_7876294_INS [dm6]	A	AAGAGGCAA	2.669e^-4	0.659	INTRON CG17816
3R	18677578	3R_18677578_SNP [dm3] 3R_22851856_SNP [dm6]	G	A	2.669e^-4	0.659	UPSTREAM CR43846 INTERGENIC
2L	3284619	2L_3284619_SNP [dm3] 2L_3284619_SNP [dm6]	C	A	2.678e^-4	0.659	INTERGENIC
3L	11361963	3L_11361963_SNP [dm3] 3L_11368863_SNP [dm6]	T	G	2.680e^-4	0.659	INTERGENIC
3L	19993564	3L_19993564_SNP [dm3] 3L_20000464_SNP [dm6]	C	T	2.680e^-4	0.659	UTR_5_PRIME CG7433 UPSTREAM Tom20 & 1 other INTRON CG7433
X	14762919	X_14762919_SNP [dm3] X_14868886_SNP [dm6]	C	G	2.684e^-4	0.659	INTRON Flo2 & 1 other
2L	7089181	2L_7089181_SNP [dm3] 2L_7089181_SNP [dm6]	A	T	2.684e^-4	0.659	INTERGENIC
X	14238710	X_14238710_SNP [dm3] X_14344677_SNP [dm6]	T	A	2.688e^-4	0.659	INTRON dpr8
2L	5675032	2L_5675032_SNP [dm3] 2L_5675032_SNP [dm6]	A	G	2.690e^-4	0.659	INTERGENIC
3L	9847103	3L_9847103_SNP [dm3] 3L_9854003_SNP [dm6]	G	A	2.695e^-4	0.659	INTRON RasGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	14762953	X_14762953_SNP [dm3] X_14868920_SNP [dm6]	A	C	2.697e^-4	0.659	INTRON Flo2 & 1 other
X	12756804	X_12756804_SNP [dm3] X_12862771_SNP [dm6]	G	A	2.697e^-4	0.659	INTRON Pde9	insulator Insulator_Class_II.mE01
2R	8964557	2R_8964557_SNP [dm3] 2R_13077052_SNP [dm6]	G	A	2.704e^-4	0.659	INTRON Drl-2
3L	2749204	3L_2749204_SNP [dm3] 3L_2749204_SNP [dm6]	A	G	2.710e^-4	0.659	INTRON Mrtf
3L	14577425	3L_14577425_SNP [dm3] 3L_14584325_SNP [dm6]	T	C	2.713e^-4	0.659	INTRON HGTX	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	9203495	2R_9203495_SNP [dm3] 2R_13315990_SNP [dm6]	G	A	2.718e^-4	0.659	INTERGENIC
3L	14581539	3L_14581539_SNP [dm3] 3L_14588439_SNP [dm6]	T	A	2.723e^-4	0.659	INTRON HGTX
3R	14858177	3R_14858177_SNP [dm3] 3R_19032455_SNP [dm6]	A	T	2.732e^-4	0.659	DOWNSTREAM CG6013 INTERGENIC
X	18675748	X_18675748_SNP [dm3] X_18781715_SNP [dm6]	G	T	2.734e^-4	0.659	UTR_3_PRIME CG18259 DOWNSTREAM CG6891	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3R	25598400	3R_25598400_INS [dm3] 3R_29772678_INS [dm6]	G	GTCTCT	2.736e^-4	0.659	UPSTREAM kay INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	16990724	2L_16990724_SNP [dm3] 2L_16990724_SNP [dm6]	A	C	2.741e^-4	0.659	INTRON beat-IIIb
3L	4979177	3L_4979177_SNP [dm3] 3L_4979177_SNP [dm6]	T	A	2.742e^-4	0.659	DOWNSTREAM CG17030 INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5675090	2L_5675090_SNP [dm3] 2L_5675090_SNP [dm6]	C	A	2.750e^-4	0.659	INTERGENIC
X	10743090	X_10743090_SNP [dm3] X_10849057_SNP [dm6]	T	G	2.753e^-4	0.659	NON_SYNONYMOUS_CODING CG2202 DOWNSTREAM CG17333	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8275054	2L_8275054_SNP [dm3] 2L_8275054_SNP [dm6]	T	A	2.763e^-4	0.659	UPSTREAM Btk29A INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	3842535	2R_3842535_SNP [dm3] 2R_7955030_SNP [dm6]	C	T	2.764e^-4	0.659	UPSTREAM CG14764 INTRON CG14764
2L	15819726	2L_15819726_SNP [dm3] 2L_15819726_SNP [dm6]	C	A	2.764e^-4	0.659	INTERGENIC	TF binding site mE1_TFBS_run
2R	17390404	2R_17390404_SNP [dm3] 2R_21502899_SNP [dm6]	T	A	2.765e^-4	0.659	INTRON MESK2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	17557393	2L_17557393_SNP [dm3] 2L_17557393_SNP [dm6]	C	A	2.769e^-4	0.659	INTERGENIC
2L	17610492	2L_17610492_SNP [dm3] 2L_17610492_SNP [dm6]	C	T	2.770e^-4	0.659	INTERGENIC
3L	1997950	3L_1997950_SNP [dm3] 3L_1997950_SNP [dm6]	G	A	2.774e^-4	0.659	INTERGENIC
X	3746988	X_3746988_SNP [dm3] X_3852955_SNP [dm6]	A	G	2.774e^-4	0.659	SYNONYMOUS_CODING ec	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2R	9207429	2R_9207429_SNP [dm3] 2R_13319924_SNP [dm6]	G	A	2.780e^-4	0.659	INTERGENIC	TF binding site mE1_TFBS_inv
3L	7274275	3L_7274275_SNP [dm3] 3L_7281175_SNP [dm6]	G	A	2.781e^-4	0.659	INTRON unc-13-4A
X	16861294	X_16861294_SNP [dm3] X_16967261_SNP [dm6]	A	G	2.784e^-4	0.659	INTRON CG9086	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3R	17613200	3R_17613200_SNP [dm3] 3R_21787478_SNP [dm6]	T	A	2.792e^-4	0.659	INTRON CASK
X	14762998	X_14762998_SNP [dm3] X_14868965_SNP [dm6]	G	T	2.792e^-4	0.659	INTRON Flo2 & 1 other
3L	18571974	3L_18571974_SNP [dm3] 3L_18578874_SNP [dm6]	A	C	2.797e^-4	0.659	INTERGENIC
2L	13308326	2L_13308326_SNP [dm3] 2L_13308326_SNP [dm6]	A	G	2.799e^-4	0.659	DOWNSTREAM CG16825 INTRON CG43778	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	17610114	2L_17610114_SNP [dm3] 2L_17610114_SNP [dm6]	A	C	2.800e^-4	0.659	INTERGENIC
2L	7358459	2L_7358459_SNP [dm3] 2L_7358459_SNP [dm6]	G	A	2.812e^-4	0.659	INTERGENIC
2L	1201765	2L_1201765_SNP [dm3] 2L_1201765_SNP [dm6]	G	T	2.818e^-4	0.659	DOWNSTREAM CG5011 INTERGENIC	TF binding site mE1_TFBS_cad
2L	9833110	2L_9833110_SNP [dm3] 2L_9833110_SNP [dm6]	A	G	2.820e^-4	0.659	INTRON nAChRalpha6
3R	3239752	3R_3239752_SNP [dm3] 3R_7414030_SNP [dm6]	G	C	2.822e^-4	0.659	INTERGENIC
2L	8984206	2L_8984206_DEL [dm3] 2L_8984206_DEL [dm6]	TATTTTCA	T	2.834e^-4	0.659	INTRON CG13101	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1543154	3L_1543154_SNP [dm3] 3L_1543154_SNP [dm6]	A	T	2.835e^-4	0.659	INTRON CG7852
3R	14336425	3R_14336425_SNP [dm3] 3R_18510703_SNP [dm6]	C	A	2.839e^-4	0.659	INTRON fru
2L	2079714	2L_2079714_SNP [dm3] 2L_2079714_SNP [dm6]	T	C	2.842e^-4	0.659	UPSTREAM CG12674 INTRON dpr3
X	1946652	X_1946652_SNP [dm3] X_2052619_SNP [dm6]	G	A	2.843e^-4	0.659	UPSTREAM CG4313 INTRON CG4313	TF binding site mE1_TFBS_cad
2L	7118834	2L_7118834_SNP [dm3] 2L_7118834_SNP [dm6]	T	A	2.844e^-4	0.659	INTRON Pvf3	TF binding site mE1_TFBS_HSA
3L	18478469	3L_18478469_SNP [dm3] 3L_18485369_SNP [dm6]	C	T	2.845e^-4	0.659	UTR_3_PRIME AstC-R2	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	11350916	3R_11350916_SNP [dm3] 3R_15525194_SNP [dm6]	C	T	2.853e^-4	0.659	INTERGENIC
3R	14858206	3R_14858206_SNP [dm3] 3R_19032484_SNP [dm6]	A	T	2.854e^-4	0.659	DOWNSTREAM CG6013 INTERGENIC
2L	3293031	2L_3293031_SNP [dm3] 2L_3293031_SNP [dm6]	G	A	2.855e^-4	0.659	INTRON CG9664	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13051796	3L_13051796_SNP [dm3] 3L_13058696_SNP [dm6]	G	A	2.859e^-4	0.659	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8896055	2L_8896055_SNP [dm3] 2L_8896055_SNP [dm6]	A	G	2.865e^-4	0.659	INTERGENIC
3R	23155024	3R_23155024_SNP [dm3] 3R_27329302_SNP [dm6]	C	G	2.866e^-4	0.659	DOWNSTREAM CG3330 INTERGENIC
X	3094410	X_3094410_SNP [dm3] X_3200377_SNP [dm6]	A	C	2.868e^-4	0.659	INTRON dnc
3R	1293685	3R_1293685_SNP [dm3] 3R_5467963_SNP [dm6]	G	T	2.870e^-4	0.659	UTR_5_PRIME CG12162 UPSTREAM RpL35A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	11880536	2R_11880536_SNP [dm3] 2R_15993031_SNP [dm6]	C	T	2.882e^-4	0.659	SYNONYMOUS_CODING CG8320 UPSTREAM Pex11 DOWNSTREAM ATPCL	TF binding site mE1_TFBS_sens
X	9222927	X_9222927_SNP [dm3] X_9328894_SNP [dm6]	C	T	2.887e^-4	0.659	DOWNSTREAM CG34450 INTRON CG34449
X	9222932	X_9222932_SNP [dm3] X_9328899_SNP [dm6]	A	T	2.887e^-4	0.659	DOWNSTREAM CG34450 INTRON CG34449
2L	7488670	2L_7488670_SNP [dm3] 2L_7488670_SNP [dm6]	A	T	2.891e^-4	0.659	INTRON Ziz
3R	20778458	3R_20778458_SNP [dm3] 3R_24952736_SNP [dm6]	G	T	2.894e^-4	0.659	INTERGENIC
X	16859710	X_16859710_SNP [dm3] X_16965677_SNP [dm6]	T	C	2.894e^-4	0.659	INTRON CG9086	TF binding site BDTNP1_TFBS_twi
X	16861282	X_16861282_DEL [dm3] X_16967249_DEL [dm6]	GGAATTGAAAA...	TC	2.894e^-4	0.659	INTRON CG9086	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2R	1843123	2R_1843123_SNP [dm3] 2R_5955618_SNP [dm6]	A	G	2.896e^-4	0.659	INTERGENIC
3R	10158699	3R_10158699_SNP [dm3] 3R_14332977_SNP [dm6]	T	A	2.896e^-4	0.659	INTRON NK7.1
2L	8891675	2L_8891675_SNP [dm3] 2L_8891675_SNP [dm6]	G	C	2.899e^-4	0.659	SYNONYMOUS_CODING CG42713
3R	25574053	3R_25574053_SNP [dm3] 3R_29748331_SNP [dm6]	A	G	2.902e^-4	0.659	SYNONYMOUS_CODING ATPsyn-gamma UPSTREAM yata DOWNSTREAM IntS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	24543342	3R_24543342_SNP [dm3] 3R_28717620_SNP [dm6]	G	C	2.902e^-4	0.659	INTRON htt	TF binding site mE1_TFBS_chinmo
3L	12606154	3L_12606154_SNP [dm3] 3L_12613054_SNP [dm6]	A	G	2.903e^-4	0.659	INTRON caup	silencer mE1_HDAC_PRE
2L	2301872	2L_2301872_SNP [dm3] 2L_2301872_SNP [dm6]	G	A	2.906e^-4	0.659	DOWNSTREAM CG31949 INTERGENIC
2L	2301987	2L_2301987_SNP [dm3] 2L_2301987_SNP [dm6]	C	T	2.906e^-4	0.659	INTERGENIC
2L	2302011	2L_2302011_SNP [dm3] 2L_2302011_SNP [dm6]	T	C	2.906e^-4	0.659	INTERGENIC
2L	2302030	2L_2302030_SNP [dm3] 2L_2302030_SNP [dm6]	C	G	2.906e^-4	0.659	INTERGENIC
2L	19278296	2L_19278296_INS [dm3] 2L_19278296_INS [dm6]	C	CC	2.907e^-4	0.659	INTERGENIC
X	14238730	X_14238730_INS [dm3] X_14344697_INS [dm6]	A	AAACTAAGCA	2.908e^-4	0.659	INTRON dpr8
3L	15442591	3L_15442591_SNP [dm3] 3L_15449491_SNP [dm6]	C	G	2.910e^-4	0.659	INTERGENIC	TF binding site mE1_TFBS_cad
2L	8275137	2L_8275137_SNP [dm3] 2L_8275137_SNP [dm6]	G	A	2.912e^-4	0.659	UPSTREAM Btk29A INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1723107	3L_1723107_SNP [dm3] 3L_1723107_SNP [dm6]	G	T	2.917e^-4	0.659	UTR_5_PRIME CG18171 INTRON drpr
3L	14584645	3L_14584645_SNP [dm3] 3L_14591545_SNP [dm6]	T	A	2.924e^-4	0.659	INTRON HGTX	TF binding site BDTNP1_TFBS_da
2R	11646649	2R_11646649_SNP [dm3] 2R_15759144_SNP [dm6]	A	T	2.924e^-4	0.659	INTRON CG30089
X	2926747	X_2926747_SNP [dm3] X_3032714_SNP [dm6]	G	A	2.925e^-4	0.659	INTRON kirre
3R	25639589	3R_25639589_SNP [dm3] 3R_29813867_SNP [dm6]	T	C	2.932e^-4	0.659	SYNONYMOUS_CODING ca	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	11789572	2R_11789572_SNP [dm3] 2R_15902067_SNP [dm6]	T	C	2.934e^-4	0.659	INTRON sli	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1395432	3L_1395432_SNP [dm3] 3L_1395432_SNP [dm6]	A	T	2.934e^-4	0.659	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11869039	X_11869039_SNP [dm3] X_11975006_SNP [dm6]	G	T	2.937e^-4	0.659	INTRON cac
3L	12453606	3L_12453606_SNP [dm3] 3L_12460506_SNP [dm6]	A	G	2.940e^-4	0.659	INTERGENIC
2L	8470294	2L_8470294_SNP [dm3] 2L_8470294_SNP [dm6]	A	T	2.946e^-4	0.659	INTRON d	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5662994	2L_5662994_SNP [dm3] 2L_5662994_SNP [dm6]	A	C	2.946e^-4	0.659	UPSTREAM CR44821 INTRON Hsp60C
3L	17732371	3L_17732371_SNP [dm3] 3L_17739271_SNP [dm6]	C	T	2.949e^-4	0.659	INTRON Ccn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17177174	X_17177174_SNP [dm3] X_17283141_SNP [dm6]	A	T	2.956e^-4	0.659	UPSTREAM CG8664 DOWNSTREAM CG8661 INTRON CG5445
3L	14571671	3L_14571671_SNP [dm3] 3L_14578571_SNP [dm6]	A	G	2.962e^-4	0.659	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z
2L	16184024	2L_16184024_SNP [dm3] 2L_16184024_SNP [dm6]	C	T	2.962e^-4	0.659	SYNONYMOUS_CODING Ca-alpha1D	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3R	25543444	3R_25543444_SNP [dm3] 3R_29717722_SNP [dm6]	G	A	2.963e^-4	0.659	UPSTREAM Obp99b & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
3L	12389872	3L_12389872_SNP [dm3] 3L_12396772_SNP [dm6]	C	T	2.968e^-4	0.659	INTRON CG32104 & 1 other	TF binding site BDTNP1_TFBS_twi
2L	19271532	2L_19271532_SNP [dm3] 2L_19271532_SNP [dm6]	T	C	2.970e^-4	0.659	EXON CR44190
3R	14446948	3R_14446948_SNP [dm3] 3R_18621226_SNP [dm6]	A	G	2.972e^-4	0.659	UPSTREAM CG14304 INTRON qin & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14919809	3R_14919809_SNP [dm3] 3R_19094087_SNP [dm6]	G	T	2.976e^-4	0.659	UTR_5_PRIME cdi UPSTREAM ATPsyn-d DOWNSTREAM mRpL55	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_Ubx
2L	17551640	2L_17551640_SNP [dm3] 2L_17551640_SNP [dm6]	T	A	2.977e^-4	0.659	INTERGENIC
3R	16787554	3R_16787554_SNP [dm3] 3R_20961832_SNP [dm6]	C	A	2.983e^-4	0.659	INTRON Atpalpha
3R	18793946	3R_18793946_SNP [dm3] 3R_22968224_SNP [dm6]	A	T	2.988e^-4	0.659	DOWNSTREAM Tpl94D INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5190560	3L_5190560_SNP [dm3] 3L_5197460_SNP [dm6]	T	A	2.989e^-4	0.659	INTRON shep
2L	8896049	2L_8896049_SNP [dm3] 2L_8896049_SNP [dm6]	T	A	2.990e^-4	0.659	INTERGENIC
2R	18002713	2R_18002713_SNP [dm3] 2R_22115208_SNP [dm6]	G	A	2.993e^-4	0.659	SYNONYMOUS_CODING CG30281 DOWNSTREAM CG30280 INTRON Vrp1
2L	8984222	2L_8984222_SNP [dm3] 2L_8984222_SNP [dm6]	T	A	2.995e^-4	0.659	INTRON CG13101	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9654646	3L_9654646_SNP [dm3] 3L_9661546_SNP [dm6]	G	A	2.996e^-4	0.659	INTRON fry	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7473245	3R_7473245_SNP [dm3] 3R_11647523_SNP [dm6]	A	T	2.997e^-4	0.659	UPSTREAM Csk INTRON Csk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8252798	2L_8252798_SNP [dm3] 2L_8252798_SNP [dm6]	C	T	2.999e^-4	0.659	INTRON CG8086
2L	9777550	2L_9777550_SNP [dm3] 2L_9777550_SNP [dm6]	G	T	3.000e^-4	0.659	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	19436443	2L_19436443_SNP [dm3] 2L_19436443_SNP [dm6]	A	C	3.001e^-4	0.659	SYNONYMOUS_CODING CG10237 DOWNSTREAM Rab9	TF binding site mE1_TFBS_chinmo
2R	12012055	2R_12012055_SNP [dm3] 2R_16124550_SNP [dm6]	G	C	3.003e^-4	0.659	SYNONYMOUS_CODING CG30095 UPSTREAM spin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	5189328	3L_5189328_SNP [dm3] 3L_5196228_SNP [dm6]	T	C	3.006e^-4	0.659	INTRON shep
3L	1827943	3L_1827943_SNP [dm3] 3L_1827943_SNP [dm6]	G	A	3.009e^-4	0.659	INTRON Cpr62Ba
3L	10828326	3L_10828326_SNP [dm3] 3L_10835226_SNP [dm6]	G	C	3.013e^-4	0.659	INTERGENIC
X	16911963	X_16911963_SNP [dm3] X_17017930_SNP [dm6]	T	G	3.013e^-4	0.659	INTRON CG45002
3L	8601728	3L_8601728_SNP [dm3] 3L_8608628_SNP [dm6]	G	T	3.015e^-4	0.659	UTR_5_PRIME CG6282 INTRON CG6282
2R	12520572	2R_12520572_SNP [dm3] 2R_16633067_SNP [dm6]	T	A	3.017e^-4	0.659	INTRON Alk	TF binding site mE1_TFBS_cad
X	8778454	X_8778454_SNP [dm3] X_8884421_SNP [dm6]	A	G	3.017e^-4	0.659	INTRON Moe	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5190494	3L_5190494_SNP [dm3] 3L_5197394_SNP [dm6]	C	A	3.020e^-4	0.659	INTRON shep
3R	25330575	3R_25330575_SNP [dm3] 3R_29504853_SNP [dm6]	T	A	3.020e^-4	0.659	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1996662	3L_1996662_SNP [dm3] 3L_1996662_SNP [dm6]	A	G	3.027e^-4	0.659	INTERGENIC
2R	18032528	2R_18032528_INS [dm3] 2R_22145023_INS [dm6]	G	GG	3.027e^-4	0.659	INTRON a
3L	17832751	3L_17832751_SNP [dm3] 3L_17839651_SNP [dm6]	A	C	3.027e^-4	0.659	UTR_3_PRIME Grd DOWNSTREAM CG5577
X	6285366	X_6285366_SNP [dm3] X_6391333_SNP [dm6]	G	A	3.028e^-4	0.659	INTERGENIC
2R	4558347	2R_4558347_SNP [dm3] 2R_8670842_SNP [dm6]	G	A	3.030e^-4	0.659	INTRON Acsl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	11469506	3R_11469506_DEL [dm3] 3R_15643784_DEL [dm6]	TTTTT	C	3.044e^-4	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8946384	2R_8946384_SNP [dm3] 2R_13058879_SNP [dm6]	A	G	3.044e^-4	0.661	SPLICE_SITE_REGION Drl-2 INTRON Drl-2
2L	2454472	2L_2454472_SNP [dm3] 2L_2454472_SNP [dm6]	T	A	3.050e^-4	0.661	UPSTREAM dpp INTRON dpp	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	1264680	3R_1264680_SNP [dm3] 3R_5438958_SNP [dm6]	T	A	3.056e^-4	0.661	INTRON CG14669	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
3L	6081010	3L_6081010_SNP [dm3] 3L_6087910_SNP [dm6]	G	A	3.057e^-4	0.661	INTRON CG13293	TF binding site mE1_TFBS_cad
3L	14144912	3L_14144912_INS [dm3] 3L_14151812_INS [dm6]	G	GAAATGG	3.063e^-4	0.661	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	17554333	2L_17554333_SNP [dm3] 2L_17554333_SNP [dm6]	C	T	3.068e^-4	0.661	DOWNSTREAM CG7094 INTERGENIC
3R	21495235	3R_21495235_SNP [dm3] 3R_25669513_SNP [dm6]	A	C	3.070e^-4	0.661	INTRON Lgr3
3L	2855142	3L_2855142_SNP [dm3] 3L_2855142_SNP [dm6]	A	G	3.071e^-4	0.661	INTRON CG43444	TF binding site mE1_TFBS_sens
X	8131763	X_8131763_SNP [dm3] X_8237730_SNP [dm6]	A	C	3.078e^-4	0.661	INTRON sdt
3R	10586051	3R_10586051_SNP [dm3] 3R_14760329_SNP [dm6]	A	T	3.078e^-4	0.661	INTRON jvl
2L	3193961	2L_3193961_SNP [dm3] 2L_3193961_SNP [dm6]	T	C	3.084e^-4	0.661	INTRON CG34393
3R	25427062	3R_25427062_SNP [dm3] 3R_29601340_SNP [dm6]	T	G	3.086e^-4	0.661	UPSTREAM CG7568 INTRON alph
3L	12346471	3L_12346471_SNP [dm3] 3L_12353371_SNP [dm6]	G	A	3.093e^-4	0.661	INTERGENIC
2R	10264871	2R_10264871_SNP [dm3] 2R_14377366_SNP [dm6]	G	A	3.097e^-4	0.661	UPSTREAM Dh44-R1 DOWNSTREAM CG30075 INTERGENIC
3L	8951939	3L_8951939_INS [dm3] 3L_8958839_INS [dm6]	C	CTC	3.105e^-4	0.661	UPSTREAM CG13313 INTERGENIC
3R	15778813	3R_15778813_DEL [dm3] 3R_19953091_DEL [dm6]	AA	A	3.107e^-4	0.661	INTRON Hs6st
3R	23155011	3R_23155011_SNP [dm3] 3R_27329289_SNP [dm6]	A	G	3.107e^-4	0.661	DOWNSTREAM CG3330 INTERGENIC
X	21071157	X_21071157_SNP [dm3] X_21200130_SNP [dm6]	A	T	3.107e^-4	0.661	INTERGENIC
3L	2133587	3L_2133587_SNP [dm3] 3L_2133587_SNP [dm6]	C	T	3.110e^-4	0.661	INTRON zormin
2L	18990760	2L_18990760_SNP [dm3] 2L_18990760_SNP [dm6]	A	G	3.122e^-4	0.661	UPSTREAM CG15169 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	17557336	2L_17557336_SNP [dm3] 2L_17557336_SNP [dm6]	A	G	3.123e^-4	0.661	INTERGENIC
3L	18617757	3L_18617757_SNP [dm3] 3L_18624657_SNP [dm6]	T	C	3.134e^-4	0.661	UTR_3_PRIME bora
3L	14578212	3L_14578212_SNP [dm3] 3L_14585112_SNP [dm6]	G	T	3.136e^-4	0.661	INTRON HGTX	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10689746	3L_10689746_SNP [dm3] 3L_10696646_SNP [dm6]	T	G	3.141e^-4	0.661	UTR_5_PRIME NijA
3L	17732820	3L_17732820_SNP [dm3] 3L_17739720_SNP [dm6]	G	A	3.142e^-4	0.661	UPSTREAM CG7460 INTRON Ccn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18183176	3R_18183176_SNP [dm3] 3R_22357454_SNP [dm6]	C	G	3.148e^-4	0.661	UPSTREAM Sar1 INTRON Sar1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9211496	2R_9211496_SNP [dm3] 2R_13323991_SNP [dm6]	G	A	3.157e^-4	0.661	INTERGENIC
X	6405469	X_6405469_DEL [dm3] X_6511436_DEL [dm6]	GGACAAAAGTCGTG...	A	3.158e^-4	0.661	INTRON CG42340
2L	13914865	2L_13914865_DEL [dm3] 2L_13914865_DEL [dm6]	TCCATAGAATTCTGTGATCG...	T	3.163e^-4	0.661	UTR_5_PRIME Ance-3
2R	19605325	2R_19605325_SNP [dm3] 2R_23717802_SNP [dm6]	G	C	3.167e^-4	0.661	DOWNSTREAM CG18128 INTRON Sesn	TF binding site mE1_TFBS_chinmo
3R	25162129	3R_25162129_DEL [dm3] 3R_29336407_DEL [dm6]	CACTACCACTCCAAGTTCCC...	C	3.168e^-4	0.661	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	19724369	2R_19724369_SNP [dm3] 2R_23836846_SNP [dm6]	T	A	3.168e^-4	0.661	NON_SYNONYMOUS_CODING CG5549	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	1925334	X_1925334_SNP [dm3] X_2031301_SNP [dm6]	C	A	3.171e^-4	0.661	INTRON Actn	TF binding site mE1_TFBS_chinmo
3R	10216303	3R_10216303_SNP [dm3] 3R_14390581_SNP [dm6]	A	G	3.172e^-4	0.661	INTERGENIC
2L	19632213	2L_19632213_SNP [dm3] 2L_19632213_SNP [dm6]	A	G	3.174e^-4	0.661	INTRON Lar
3L	10915128	3L_10915128_SNP [dm3] 3L_10922028_SNP [dm6]	T	A	3.174e^-4	0.661	INTERGENIC
3L	12197394	3L_12197394_SNP [dm3] 3L_12204294_SNP [dm6]	T	G	3.176e^-4	0.661	UTR_3_PRIME CG5626 UPSTREAM Adk1
2L	3102952	2L_3102952_SNP [dm3] 2L_3102952_SNP [dm6]	C	T	3.179e^-4	0.661	INTRON toc
2R	18358454	2R_18358454_SNP [dm3] 2R_22470949_SNP [dm6]	C	G	3.179e^-4	0.661	INTRON CG10384	TF binding site mE1_TFBS_chinmo
3R	21486031	3R_21486031_SNP [dm3] 3R_25660309_SNP [dm6]	G	C	3.191e^-4	0.661	INTRON Tnks	TF binding site mE1_TFBS_cad
3R	18143421	3R_18143421_SNP [dm3] 3R_22317699_SNP [dm6]	C	T	3.194e^-4	0.661	INTRON CG34377	TF binding site mE1_TFBS_chinmo
3R	13460725	3R_13460725_SNP [dm3] 3R_17635003_SNP [dm6]	A	G	3.195e^-4	0.661	INTRON CG43175
2L	8831192	2L_8831192_SNP [dm3] 2L_8831192_SNP [dm6]	C	T	3.198e^-4	0.661	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	4933840	2R_4933840_INS [dm3] 2R_9046335_INS [dm6]	C	CAC	3.201e^-4	0.661	UTR_3_PRIME CG13743
2R	19231261	2R_19231261_SNP [dm3] 2R_23343738_SNP [dm6]	A	T	3.202e^-4	0.661	INTRON CG3502
2L	7958006	2L_7958006_SNP [dm3] 2L_7958006_SNP [dm6]	G	A	3.204e^-4	0.661	INTRON Snoo	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	2444053	2L_2444053_SNP [dm3] 2L_2444053_SNP [dm6]	C	G	3.212e^-4	0.662	INTRON dpp	enhancer FlyBase regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18932688	3R_18932688_SNP [dm3] 3R_23106966_SNP [dm6]	G	C	3.213e^-4	0.662	INTRON CG13830
2R	8189155	2R_8189155_SNP [dm3] 2R_12301650_SNP [dm6]	C	T	3.221e^-4	0.662	DOWNSTREAM CG42700 & 1 other INTRON CG8850
3L	8512162	3L_8512162_SNP [dm3] 3L_8519062_SNP [dm6]	A	G	3.223e^-4	0.662	DOWNSTREAM CG6765 INTRON GstO3
2L	19436077	2L_19436077_SNP [dm3] 2L_19436077_SNP [dm6]	T	C	3.227e^-4	0.662	UTR_3_PRIME CG10237 DOWNSTREAM Rab9
3R	3812162	3R_3812162_SNP [dm3] 3R_7986440_SNP [dm6]	C	T	3.232e^-4	0.662	INTRON CG2781
2L	15751390	2L_15751390_SNP [dm3] 2L_15751390_SNP [dm6]	A	T	3.234e^-4	0.662	UPSTREAM l_2_35Di & 1 other DOWNSTREAM snRNA:U5:35D INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	8992680	2L_8992680_SNP [dm3] 2L_8992680_SNP [dm6]	T	A	3.238e^-4	0.662	INTRON CG9555
2L	17548457	2L_17548457_SNP [dm3] 2L_17548457_SNP [dm6]	T	C	3.244e^-4	0.663	DOWNSTREAM CR45697 INTERGENIC
3L	8959780	3L_8959780_SNP [dm3] 3L_8966680_SNP [dm6]	A	C	3.250e^-4	0.663	UPSTREAM CG5021 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7002017	2R_7002017_SNP [dm3] 2R_11114512_SNP [dm6]	A	C	3.256e^-4	0.663	INTRON luna
X	18239757	X_18239757_SNP [dm3] X_18345724_SNP [dm6]	G	A	3.264e^-4	0.663	INTRON CG6123
3L	12655820	3L_12655820_SNP [dm3] 3L_12662720_SNP [dm6]	A	G	3.264e^-4	0.663	DOWNSTREAM CR44552 INTERGENIC
3L	2001363	3L_2001363_SNP [dm3] 3L_2001363_SNP [dm6]	T	G	3.267e^-4	0.663	INTERGENIC
2L	14316791	2L_14316791_SNP [dm3] 2L_14316791_SNP [dm6]	A	G	3.267e^-4	0.663	INTRON wb
X	12157913	X_12157913_SNP [dm3] X_12263880_SNP [dm6]	T	G	3.273e^-4	0.663	INTRON Ten-a
3L	752144	3L_752144_SNP [dm3] 3L_752144_SNP [dm6]	A	G	3.274e^-4	0.663	INTRON hng3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
2R	9203456	2R_9203456_INS [dm3] 2R_13315951_INS [dm6]	C	CC	3.280e^-4	0.663	INTERGENIC
2L	16538786	2L_16538786_SNP [dm3] 2L_16538786_SNP [dm6]	A	G	3.281e^-4	0.663	INTERGENIC
3R	21352027	3R_21352027_DEL [dm3] 3R_25526305_DEL [dm6]	GCTATTTATGTATTCAAAAC...	G	3.283e^-4	0.663	INTRON msi
3R	24581096	3R_24581096_SNP [dm3] 3R_28755374_SNP [dm6]	G	T	3.291e^-4	0.663	DOWNSTREAM CG9997 INTERGENIC
3R	10216310	3R_10216310_INS [dm3] 3R_14390588_INS [dm6]	A	AA	3.292e^-4	0.663	INTERGENIC
3L	5045251	3L_5045251_SNP [dm3] 3L_5045251_SNP [dm6]	C	T	3.324e^-4	0.669	INTRON Con
2L	6424111	2L_6424111_SNP [dm3] 2L_6424111_SNP [dm6]	A	T	3.334e^-4	0.67	UPSTREAM Tig & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	15144758	2R_15144758_SNP [dm3] 2R_19257253_SNP [dm6]	A	G	3.338e^-4	0.67	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
3L	14791578	3L_14791578_SNP [dm3] 3L_14798478_SNP [dm6]	T	G	3.344e^-4	0.671	INTRON CG9425	TF binding site mE1_TFBS_cad
3L	14571133	3L_14571133_DEL [dm3] 3L_14578033_DEL [dm6]	GCTATGTAATATATAA...	G	3.350e^-4	0.671	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3R	15646018	3R_15646018_SNP [dm3] 3R_19820296_SNP [dm6]	G	A	3.353e^-4	0.671	INTRON bnl	TF binding site mE1_TFBS_chinmo
2R	11646622	2R_11646622_SNP [dm3] 2R_15759117_SNP [dm6]	A	C	3.366e^-4	0.671	INTRON CG30089
3L	21308788	3L_21308788_SNP [dm3] 3L_21315688_SNP [dm6]	A	G	3.369e^-4	0.671	UTR_3_PRIME Pc
3L	5190501	3L_5190501_SNP [dm3] 3L_5197401_SNP [dm6]	A	T	3.371e^-4	0.671	INTRON shep
3L	14563159	3L_14563159_SNP [dm3] 3L_14570059_SNP [dm6]	G	C	3.373e^-4	0.671	INTERGENIC
3L	17746537	3L_17746537_SNP [dm3] 3L_17753437_SNP [dm6]	C	T	3.379e^-4	0.671	INTRON Adgf-A
3R	11004627	3R_11004627_SNP [dm3] 3R_15178905_SNP [dm6]	A	C	3.381e^-4	0.671	INTRON Gyc88E & 1 other
2L	16549549	2L_16549549_SNP [dm3] 2L_16549549_SNP [dm6]	T	C	3.389e^-4	0.671	SYNONYMOUS_CODING CG5968 INTRON CG42389
2R	11792394	2R_11792394_SNP [dm3] 2R_15904889_SNP [dm6]	C	T	3.389e^-4	0.671	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3R	25887129	3R_25887129_SNP [dm3] 3R_30061407_SNP [dm6]	A	C	3.391e^-4	0.671	INTRON sima	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	18750496	X_18750496_SNP [dm3] X_18856463_SNP [dm6]	T	C	3.394e^-4	0.671	DOWNSTREAM CG34422 INTRON CG7322
3R	14336286	3R_14336286_SNP [dm3] 3R_18510564_SNP [dm6]	C	T	3.397e^-4	0.671	INTRON fru
2L	7957515	2L_7957515_SNP [dm3] 2L_7957515_SNP [dm6]	G	A	3.403e^-4	0.671	INTRON Snoo
3L	18617924	3L_18617924_SNP [dm3] 3L_18624824_SNP [dm6]	G	A	3.404e^-4	0.671	DOWNSTREAM bora INTERGENIC	TF binding site mE1_TFBS_sens
2R	15430734	2R_15430734_SNP [dm3] 2R_19543229_SNP [dm6]	C	G	3.405e^-4	0.671	INTRON sm	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
2R	14535255	2R_14535255_SNP [dm3] 2R_18647750_SNP [dm6]	T	C	3.407e^-4	0.671	INTRON SP2637	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16730360	2R_16730360_SNP [dm3] 2R_20842855_SNP [dm6]	T	A	3.414e^-4	0.672	INTERGENIC
3R	3380667	3R_3380667_SNP [dm3] 3R_7554945_SNP [dm6]	C	G	3.420e^-4	0.672	INTERGENIC
2L	5973790	2L_5973790_SNP [dm3] 2L_5973790_SNP [dm6]	A	G	3.425e^-4	0.672	INTRON chic
3L	4539228	3L_4539228_SNP [dm3] 3L_4539228_SNP [dm6]	T	A	3.426e^-4	0.672	UTR_3_PRIME CG11353 DOWNSTREAM CG32243	TF binding site BDTNP1_TFBS_twi
2L	17549980	2L_17549980_SNP [dm3] 2L_17549980_SNP [dm6]	T	G	3.431e^-4	0.672	INTERGENIC
3L	1996637	3L_1996637_SNP [dm3] 3L_1996637_SNP [dm6]	G	A	3.432e^-4	0.672	INTERGENIC
2L	18030404	2L_18030404_INS [dm3] 2L_18030404_INS [dm6]	A	ATC	3.434e^-4	0.672	INTRON rdo
X	16030838	X_16030838_SNP [dm3] X_16136805_SNP [dm6]	G	T	3.439e^-4	0.672	INTRON disco-r
2L	17587931	2L_17587931_SNP [dm3] 2L_17587931_SNP [dm6]	C	T	3.446e^-4	0.672	DOWNSTREAM CR44411 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3497447	3L_3497447_SNP [dm3] 3L_3497447_SNP [dm6]	C	T	3.449e^-4	0.672	INTRON CG42324
3L	5476224	3L_5476224_SNP [dm3] 3L_5483124_SNP [dm6]	T	C	3.453e^-4	0.672	NON_SYNONYMOUS_CODING CG4835
X	16270646	X_16270646_SNP [dm3] X_16376613_SNP [dm6]	A	G	3.455e^-4	0.672	INTRON Fur2
2L	13915615	2L_13915615_SNP [dm3] 2L_13915615_SNP [dm6]	C	G	3.463e^-4	0.672	NON_SYNONYMOUS_CODING Ance-3	TF binding site BDTNP1_TFBS_twi
3R	18378788	3R_18378788_SNP [dm3] 3R_22553066_SNP [dm6]	G	A	3.466e^-4	0.672	UPSTREAM bond & 1 other INTRON bond
3R	24606479	3R_24606479_SNP [dm3] 3R_28780757_SNP [dm6]	C	G	3.469e^-4	0.672	INTERGENIC
3L	18483086	3L_18483086_SNP [dm3] 3L_18489986_SNP [dm6]	A	G	3.472e^-4	0.672	INTRON AstC-R2
3L	1996808	3L_1996808_SNP [dm3] 3L_1996808_SNP [dm6]	G	A	3.476e^-4	0.672	INTERGENIC
X	11839765	X_11839765_SNP [dm3] X_11945732_SNP [dm6]	C	A	3.478e^-4	0.672	INTRON cac
3R	26986469	3R_26986469_SNP [dm3] 3R_31160747_SNP [dm6]	T	G	3.479e^-4	0.672	INTRON Gycbeta100B & 1 other
2R	12438646	2R_12438646_SNP [dm3] 2R_16551141_SNP [dm6]	T	G	3.488e^-4	0.672	INTERGENIC
2L	2344831	2L_2344831_SNP [dm3] 2L_2344831_SNP [dm6]	A	G	3.489e^-4	0.672	INTRON CG9967 & 1 other
2L	6424110	2L_6424110_SNP [dm3] 2L_6424110_SNP [dm6]	G	A	3.494e^-4	0.673	UPSTREAM Tig & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	9203477	2R_9203477_SNP [dm3] 2R_13315972_SNP [dm6]	A	T	3.500e^-4	0.673	INTERGENIC
2R	10266263	2R_10266263_SNP [dm3] 2R_14378758_SNP [dm6]	C	T	3.505e^-4	0.673	INTRON Dh44-R1
3L	17066379	3L_17066379_SNP [dm3] 3L_17073279_SNP [dm6]	G	A	3.516e^-4	0.673	DOWNSTREAM Rbp6 INTRON Rbp6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	18490385	3L_18490385_SNP [dm3] 3L_18497285_SNP [dm6]	C	G	3.521e^-4	0.673	INTRON AstC-R2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1283380	3R_1283380_INS [dm3] 3R_5457658_INS [dm6]	A	ATG	3.526e^-4	0.673	UTR_3_PRIME CG14669 DOWNSTREAM PEK & 1 other
3R	13807237	3R_13807237_SNP [dm3] 3R_17981515_SNP [dm6]	T	A	3.526e^-4	0.673	INTRON cpo
3R	16051201	3R_16051201_DEL [dm3] 3R_20225479_DEL [dm6]	TAAGC	T	3.527e^-4	0.673	INTRON Nlg4
3L	15094135	3L_15094135_SNP [dm3] 3L_15101035_SNP [dm6]	T	A	3.530e^-4	0.673	INTRON CTPsyn EXON CR43972	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
2L	13974167	2L_13974167_SNP [dm3] 2L_13974167_SNP [dm6]	T	G	3.535e^-4	0.673	UTR_3_PRIME NimC1
2L	3377836	2L_3377836_SNP [dm3] 2L_3377836_SNP [dm6]	T	A	3.540e^-4	0.673	INTRON Ptpa	TF binding site mE1_TFBS_sens
2L	3377838	2L_3377838_SNP [dm3] 2L_3377838_SNP [dm6]	C	T	3.540e^-4	0.673	INTRON Ptpa	TF binding site mE1_TFBS_sens
2L	13885574	2L_13885574_SNP [dm3] 2L_13885574_SNP [dm6]	G	A	3.540e^-4	0.673	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	24247989	3L_24247989_SNP [dm3] 3L_24254889_SNP [dm6]	C	T	3.547e^-4	0.673	INTRON Snap25
X	12157823	X_12157823_SNP [dm3] X_12263790_SNP [dm6]	G	A	3.550e^-4	0.673	INTRON Ten-a
2R	9203429	2R_9203429_SNP [dm3] 2R_13315924_SNP [dm6]	T	A	3.552e^-4	0.673	INTERGENIC
3R	25842443	3R_25842443_SNP [dm3] 3R_30016721_SNP [dm6]	G	A	3.554e^-4	0.673	SYNONYMOUS_CODING Mgat2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3189298	2L_3189298_INS [dm3] 2L_3189298_INS [dm6]	T	TA	3.560e^-4	0.673	INTRON CG34393
3L	4600411	3L_4600411_SNP [dm3] 3L_4600411_SNP [dm6]	T	G	3.561e^-4	0.673	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5190499	3L_5190499_SNP [dm3] 3L_5197399_SNP [dm6]	A	C	3.564e^-4	0.673	INTRON shep
X	14763042	X_14763042_SNP [dm3] X_14869009_SNP [dm6]	C	T	3.566e^-4	0.673	INTRON Flo2 & 1 other
2R	18051382	2R_18051382_SNP [dm3] 2R_22163877_SNP [dm6]	T	A	3.578e^-4	0.674	NON_SYNONYMOUS_CODING CG34206 INTRON a
3L	14563591	3L_14563591_SNP [dm3] 3L_14570491_SNP [dm6]	C	T	3.595e^-4	0.676	INTERGENIC
2L	16317240	2L_16317240_SNP [dm3] 2L_16317240_SNP [dm6]	G	C	3.597e^-4	0.676	INTRON cact
2R	14667523	2R_14667523_SNP [dm3] 2R_18780018_SNP [dm6]	G	A	3.598e^-4	0.676	INTERGENIC
2R	19565688	2R_19565688_SNP [dm3] 2R_23678165_SNP [dm6]	T	A	3.601e^-4	0.676	SPLICE_SITE_REGION Pde8 INTRON Pde8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25595123	3R_25595123_SNP [dm3] 3R_29769401_SNP [dm6]	C	T	3.607e^-4	0.676	INTRON kay

By genomic position
Variant impact
Gene name

Wolbachi_Consens_Dif phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results