DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.243e^-10)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	<2e-16

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	124.3929	6.9112e-29
In_2L_t	7.9591	0.0187

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2430 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	13746320	2R_13746320_SNP [dm3] 2R_17858815_SNP [dm6]	C	T	6.461e^-7	0.411	INTRON olf186-F
2R	16251297	2R_16251297_SNP [dm3] 2R_20363792_SNP [dm6]	A	T	1.111e^-6	0.411	INTERGENIC
3L	15883094	3L_15883094_SNP [dm3] 3L_15889994_SNP [dm6]	C	T	1.213e^-6	0.411	INTRON pHCl
2R	8895851	2R_8895851_SNP [dm3] 2R_13008346_SNP [dm6]	G	A	1.807e^-6	0.411	DOWNSTREAM Su_z_2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	6476394	X_6476394_SNP [dm3] X_6582361_SNP [dm6]	G	C	1.921e^-6	0.411	SYNONYMOUS_CODING CG34417 INTRON CG34417
3L	6757397	3L_6757397_INS [dm3] 3L_6764297_INS [dm6]	T	TGCAG	2.223e^-6	0.411	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2R	12364551	2R_12364551_SNP [dm3] 2R_16477046_SNP [dm6]	A	C	2.388e^-6	0.411	INTERGENIC
3R	17238781	3R_17238781_SNP [dm3] 3R_21413059_SNP [dm6]	A	G	2.681e^-6	0.411	INTRON lbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8895935	2R_8895935_SNP [dm3] 2R_13008430_SNP [dm6]	C	A	3.069e^-6	0.411	DOWNSTREAM Su_z_2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	17238782	3R_17238782_SNP [dm3] 3R_21413060_SNP [dm6]	G	T	3.264e^-6	0.411	INTRON lbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15279681	3R_15279681_SNP [dm3] 3R_19453959_SNP [dm6]	C	T	3.310e^-6	0.411	INTRON CG31221
2R	7612650	2R_7612650_SNP [dm3] 2R_11725145_SNP [dm6]	T	C	3.480e^-6	0.411	SYNONYMOUS_CODING pyr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7488723	2L_7488723_SNP [dm3] 2L_7488723_SNP [dm6]	G	A	3.640e^-6	0.411	INTRON Ziz
2R	9249016	2R_9249016_SNP [dm3] 2R_13361511_SNP [dm6]	A	T	3.708e^-6	0.411	DOWNSTREAM CR45312 INTERGENIC
3L	9728221	3L_9728221_SNP [dm3] 3L_9735121_SNP [dm6]	A	G	4.031e^-6	0.411	SYNONYMOUS_CODING CG42268 UTR_3_PRIME CG42268
3L	6757339	3L_6757339_SNP [dm3] 3L_6764239_SNP [dm6]	A	G	4.031e^-6	0.411	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	6757387	3L_6757387_SNP [dm3] 3L_6764287_SNP [dm6]	T	A	4.170e^-6	0.411	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2L	3514424	2L_3514424_SNP [dm3] 2L_3514424_SNP [dm6]	C	T	4.199e^-6	0.411	UPSTREAM CG17593 INTRON CG33123	TF binding site mE1_TFBS_cad
3L	6757340	3L_6757340_SNP [dm3] 3L_6764240_SNP [dm6]	A	C	4.286e^-6	0.411	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	15884504	3L_15884504_SNP [dm3] 3L_15891404_SNP [dm6]	T	C	4.814e^-6	0.411	INTRON pHCl
3R	26879026	3R_26879026_SNP [dm3] 3R_31053304_SNP [dm6]	C	T	5.418e^-6	0.411	NON_SYNONYMOUS_CODING l_3_03670 DOWNSTREAM Aph-4 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	8149957	2L_8149957_SNP [dm3] 2L_8149957_SNP [dm6]	G	A	5.698e^-6	0.411	INTRON CG8552 & 1 other
3R	16376863	3R_16376863_SNP [dm3] 3R_20551141_SNP [dm6]	C	T	5.716e^-6	0.411	UPSTREAM Stat92E INTRON Stat92E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
3R	23019195	3R_23019195_SNP [dm3] 3R_27193473_SNP [dm6]	C	T	5.922e^-6	0.411	INTRON Ser	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3R	25557404	3R_25557404_SNP [dm3] 3R_29731682_SNP [dm6]	A	G	5.931e^-6	0.411	SYNONYMOUS_CODING Kul UTR_3_PRIME Kul	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7612542	2R_7612542_SNP [dm3] 2R_11725037_SNP [dm6]	T	C	6.157e^-6	0.411	SYNONYMOUS_CODING pyr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9249395	2R_9249395_SNP [dm3] 2R_13361890_SNP [dm6]	T	G	6.232e^-6	0.411	EXON CR45312
3L	5056818	3L_5056818_SNP [dm3] 3L_5056818_SNP [dm6]	C	G	6.236e^-6	0.411	INTRON Con
3L	5056820	3L_5056820_SNP [dm3] 3L_5056820_SNP [dm6]	T	G	6.553e^-6	0.411	INTRON Con
2R	11000178	2R_11000178_SNP [dm3] 2R_15112673_SNP [dm6]	C	A	6.581e^-6	0.411	INTERGENIC
2L	1024299	2L_1024299_DEL [dm3] 2L_1024299_DEL [dm6]	GACTG	G	6.943e^-6	0.42	INTRON IA-2
2R	9249409	2R_9249409_SNP [dm3] 2R_13361904_SNP [dm6]	C	A	7.233e^-6	0.424	EXON CR45312
X	14962284	X_14962284_SNP [dm3] X_15068251_SNP [dm6]	G	C	7.689e^-6	0.425	NON_SYNONYMOUS_CODING dob DOWNSTREAM Lsd-2
2R	13745797	2R_13745797_SNP [dm3] 2R_17858292_SNP [dm6]	A	G	7.700e^-6	0.425	INTRON olf186-F
3L	6757343	3L_6757343_SNP [dm3] 3L_6764243_SNP [dm6]	C	A	8.435e^-6	0.446	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2L	4778958	2L_4778958_SNP [dm3] 2L_4778958_SNP [dm6]	C	A	8.561e^-6	0.446	INTRON CG15630
3L	6757470	3L_6757470_SNP [dm3] 3L_6764370_SNP [dm6]	T	C	8.901e^-6	0.451	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	6757468	3L_6757468_SNP [dm3] 3L_6764368_SNP [dm6]	T	C	9.154e^-6	0.452	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	10003968	3L_10003968_SNP [dm3] 3L_10010868_SNP [dm6]	G	A	9.474e^-6	0.456	INTRON dpr6
3R	13893806	3R_13893806_DEL [dm3] 3R_18068084_DEL [dm6]	TG	A	9.839e^-6	0.457	INTERGENIC
2L	9112662	2L_9112662_SNP [dm3] 2L_9112662_SNP [dm6]	G	T	9.995e^-6	0.457	INTRON Or30a
3R	26885357	3R_26885357_SNP [dm3] 3R_31059635_SNP [dm6]	C	A	1.080e^-5	0.478	INTRON dco	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	6757409	3L_6757409_SNP [dm3] 3L_6764309_SNP [dm6]	C	T	1.097e^-5	0.478	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3R	13893851	3R_13893851_INS [dm3] 3R_18068129_INS [dm6]	A	AA	1.203e^-5	0.511	INTERGENIC
3R	23378137	3R_23378137_SNP [dm3] 3R_27552415_SNP [dm6]	T	A	1.227e^-5	0.511	INTRON Klp98A	TF binding site mE1_TFBS_cad
3L	7851788	3L_7851788_SNP [dm3] 3L_7858688_SNP [dm6]	A	G	1.380e^-5	0.527	INTRON Pdp1	TF binding site mE1_TFBS_HSA
2L	9112660	2L_9112660_SNP [dm3] 2L_9112660_SNP [dm6]	T	G	1.450e^-5	0.527	INTRON Or30a
2L	3514519	2L_3514519_SNP [dm3] 2L_3514519_SNP [dm6]	C	A	1.451e^-5	0.527	UPSTREAM CG17593 INTRON CG33123	TF binding site mE1_TFBS_cad
3R	21020347	3R_21020347_SNP [dm3] 3R_25194625_SNP [dm6]	T	C	1.464e^-5	0.527	UPSTREAM lobo & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	6757150	3L_6757150_SNP [dm3] 3L_6764050_SNP [dm6]	C	A	1.465e^-5	0.527	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA
3R	14840851	3R_14840851_SNP [dm3] 3R_19015129_SNP [dm6]	C	T	1.507e^-5	0.527	INTRON gukh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	6941793	2L_6941793_SNP [dm3] 2L_6941793_SNP [dm6]	T	C	1.526e^-5	0.527	INTRON CG18304	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	9201997	2R_9201997_SNP [dm3] 2R_13314492_SNP [dm6]	C	T	1.544e^-5	0.527	INTERGENIC
2L	13163495	2L_13163495_SNP [dm3] 2L_13163495_SNP [dm6]	T	C	1.566e^-5	0.527	NON_SYNONYMOUS_CODING DnaJ-H UTR_3_PRIME DnaJ-H DOWNSTREAM CG5204	TF binding site mE1_TFBS_cad
3R	26800542	3R_26800542_SNP [dm3] 3R_30974820_SNP [dm6]	A	C	1.645e^-5	0.527	INTRON 5-HT7
2L	1024368	2L_1024368_INS [dm3] 2L_1024368_INS [dm6]	A	AATTCATGGA	1.672e^-5	0.527	INTRON IA-2
2L	1024353	2L_1024353_SNP [dm3] 2L_1024353_SNP [dm6]	T	A	1.678e^-5	0.527	INTRON IA-2
X	13683486	X_13683486_SNP [dm3] X_13789453_SNP [dm6]	T	C	1.716e^-5	0.527	DOWNSTREAM CG10993 INTRON inaE
X	5946894	X_5946894_DEL [dm3] X_6052861_DEL [dm6]	CGGCTCAGCTC...	C	1.758e^-5	0.527	INTRON CG5921
3L	6757173	3L_6757173_DEL [dm3] 3L_6764073_DEL [dm6]	TT	T	1.809e^-5	0.527	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA
3L	18753910	3L_18753910_INS [dm3] 3L_18760810_INS [dm6]	C	CTCTCCC	1.818e^-5	0.527	INTRON ftz-f1	TF binding site mE1_TFBS_Trl
3L	5966628	3L_5966628_SNP [dm3] 3L_5973528_SNP [dm6]	T	C	1.824e^-5	0.527	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	10050281	2L_10050281_SNP [dm3] 2L_10050281_SNP [dm6]	C	T	1.826e^-5	0.527	SYNONYMOUS_CODING CG33301	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6757178	3L_6757178_SNP [dm3] 3L_6764078_SNP [dm6]	T	C	1.838e^-5	0.527	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA
3R	12849379	3R_12849379_SNP [dm3] 3R_17023657_SNP [dm6]	A	G	1.889e^-5	0.527	INTRON Pxd
3L	10066407	3L_10066407_DEL [dm3] 3L_10073307_DEL [dm6]	TAC	A	1.899e^-5	0.527	INTRON dpr6
3L	6757282	3L_6757282_SNP [dm3] 3L_6764182_SNP [dm6]	G	A	1.948e^-5	0.527	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	2835279	3L_2835279_SNP [dm3] 3L_2835279_SNP [dm6]	A	T	1.950e^-5	0.527	INTRON CG43444
3R	13464813	3R_13464813_SNP [dm3] 3R_17639091_SNP [dm6]	T	C	1.971e^-5	0.527	INTRON CG43175 EXON CR45222
2R	11000136	2R_11000136_SNP [dm3] 2R_15112631_SNP [dm6]	C	T	1.988e^-5	0.527	INTERGENIC
2R	9249407	2R_9249407_SNP [dm3] 2R_13361902_SNP [dm6]	G	T	2.002e^-5	0.527	EXON CR45312
3L	6757372	3L_6757372_SNP [dm3] 3L_6764272_SNP [dm6]	T	G	2.022e^-5	0.527	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3R	26878142	3R_26878142_SNP [dm3] 3R_31052420_SNP [dm6]	T	A	2.069e^-5	0.532	UTR_3_PRIME Aph-4 DOWNSTREAM l_3_03670	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	14341635	3L_14341635_SNP [dm3] 3L_14348535_SNP [dm6]	G	C	2.119e^-5	0.532	INTRON fz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15886310	3L_15886310_SNP [dm3] 3L_15893210_SNP [dm6]	C	T	2.161e^-5	0.532	INTRON pHCl
3R	26913678	3R_26913678_SNP [dm3] 3R_31087956_SNP [dm6]	G	C	2.216e^-5	0.532	INTERGENIC
3R	12849244	3R_12849244_SNP [dm3] 3R_17023522_SNP [dm6]	A	C	2.258e^-5	0.532	INTRON Pxd
2L	4392083	2L_4392083_SNP [dm3] 2L_4392083_SNP [dm6]	C	T	2.299e^-5	0.532	SYNONYMOUS_CODING Tps1 DOWNSTREAM CG3652	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15884625	3L_15884625_SNP [dm3] 3L_15891525_SNP [dm6]	A	G	2.326e^-5	0.532	INTRON pHCl
X	6285366	X_6285366_SNP [dm3] X_6391333_SNP [dm6]	G	A	2.376e^-5	0.532	INTERGENIC
3R	9951655	3R_9951655_SNP [dm3] 3R_14125933_SNP [dm6]	A	G	2.377e^-5	0.532	START_GAINED RpII140 UTR_5_PRIME RpII140 UPSTREAM 140up	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16533989	3R_16533989_SNP [dm3] 3R_20708267_SNP [dm6]	C	A	2.403e^-5	0.532	INTRON Oamb
2L	3502332	2L_3502332_INS [dm3] 2L_3502332_INS [dm6]	T	CA	2.518e^-5	0.532	INTRON tim
3R	26878414	3R_26878414_SNP [dm3] 3R_31052692_SNP [dm6]	C	T	2.524e^-5	0.532	UTR_3_PRIME l_3_03670 DOWNSTREAM Aph-4	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	11465416	2L_11465416_SNP [dm3] 2L_11465416_SNP [dm6]	G	A	2.538e^-5	0.532	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	13347692	X_13347692_SNP [dm3] X_13453659_SNP [dm6]	T	C	2.591e^-5	0.532	INTRON Neto
3L	14163847	3L_14163847_SNP [dm3] 3L_14170747_SNP [dm6]	C	T	2.597e^-5	0.532	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	15279425	3R_15279425_SNP [dm3] 3R_19453703_SNP [dm6]	G	T	2.603e^-5	0.532	INTRON CG31221
3L	4994610	3L_4994610_SNP [dm3] 3L_4994610_SNP [dm6]	C	T	2.604e^-5	0.532	SYNONYMOUS_CODING CG32232 INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	2835271	3L_2835271_SNP [dm3] 3L_2835271_SNP [dm6]	T	A	2.612e^-5	0.532	INTRON CG43444
3L	6757294	3L_6757294_SNP [dm3] 3L_6764194_SNP [dm6]	C	A	2.636e^-5	0.532	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	18753899	3L_18753899_SNP [dm3] 3L_18760799_SNP [dm6]	C	A	2.686e^-5	0.532	INTRON ftz-f1	TF binding site mE1_TFBS_Trl
3L	9340735	3L_9340735_SNP [dm3] 3L_9347635_SNP [dm6]	A	G	2.710e^-5	0.532	DOWNSTREAM PGRP-LC INTRON PGRP-LC
3R	17252972	3R_17252972_SNP [dm3] 3R_21427250_SNP [dm6]	C	G	2.718e^-5	0.532	INTRON lbl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	26780417	3R_26780417_SNP [dm3] 3R_30954695_SNP [dm6]	A	G	2.729e^-5	0.532	INTERGENIC
3R	26785264	3R_26785264_SNP [dm3] 3R_30959542_SNP [dm6]	G	A	2.729e^-5	0.532	UPSTREAM CG15548 INTERGENIC
3L	5365580	3L_5365580_SNP [dm3] 3L_5372480_SNP [dm6]	C	T	2.750e^-5	0.532	UPSTREAM CR44516 INTERGENIC
2L	7898740	2L_7898740_SNP [dm3] 2L_7898740_SNP [dm6]	C	T	2.830e^-5	0.542	INTRON Snoo	TF binding site mE1_TFBS_cad
3L	8797613	3L_8797613_SNP [dm3] 3L_8804513_SNP [dm6]	C	T	2.939e^-5	0.546	UPSTREAM CG34427 & 1 other DOWNSTREAM CG34426 INTERGENIC
3L	6757251	3L_6757251_SNP [dm3] 3L_6764151_SNP [dm6]	A	G	2.983e^-5	0.546	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	6757313	3L_6757313_SNP [dm3] 3L_6764213_SNP [dm6]	T	A	3.017e^-5	0.546	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	17961288	3L_17961288_DEL [dm3] 3L_17968188_DEL [dm6]	GGCTAATTAACGATGGCATT...	G	3.044e^-5	0.546	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	19253522	3R_19253522_SNP [dm3] 3R_23427800_SNP [dm6]	T	G	3.057e^-5	0.546	INTRON CG4374	TF binding site BDTNP1_TFBS_prd
3R	14840861	3R_14840861_SNP [dm3] 3R_19015139_SNP [dm6]	C	T	3.082e^-5	0.546	INTRON gukh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	9112676	2L_9112676_SNP [dm3] 2L_9112676_SNP [dm6]	T	A	3.102e^-5	0.546	INTRON Or30a
X	19541038	X_19541038_SNP [dm3] X_19647005_SNP [dm6]	G	A	3.135e^-5	0.546	UTR_3_PRIME Ranbp21 UPSTREAM Arp10
2L	9112672	2L_9112672_SNP [dm3] 2L_9112672_SNP [dm6]	T	G	3.159e^-5	0.546	INTRON Or30a
2R	9255523	2R_9255523_SNP [dm3] 2R_13368018_SNP [dm6]	T	C	3.184e^-5	0.546	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	18128446	3R_18128446_SNP [dm3] 3R_22302724_SNP [dm6]	T	G	3.207e^-5	0.546	INTRON CG7084	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13464812	3R_13464812_SNP [dm3] 3R_17639090_SNP [dm6]	C	T	3.263e^-5	0.546	INTRON CG43175 EXON CR45222
3L	18749704	3L_18749704_SNP [dm3] 3L_18756604_SNP [dm6]	A	T	3.270e^-5	0.546	INTRON ftz-f1
2L	7898211	2L_7898211_SNP [dm3] 2L_7898211_SNP [dm6]	C	A	3.272e^-5	0.546	INTRON Snoo
2R	17001614	2R_17001614_SNP [dm3] 2R_21114109_SNP [dm6]	C	G	3.344e^-5	0.546	INTRON ktub
3R	9951627	3R_9951627_SNP [dm3] 3R_14125905_SNP [dm6]	T	A	3.345e^-5	0.546	START_GAINED RpII140 UTR_5_PRIME RpII140 UPSTREAM 140up	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1024337	2L_1024337_DEL [dm3] 2L_1024337_DEL [dm6]	TATCAAA	T	3.383e^-5	0.546	INTRON IA-2
X	9105066	X_9105066_SNP [dm3] X_9211033_SNP [dm6]	C	G	3.406e^-5	0.546	UPSTREAM CG12119 INTERGENIC
X	17027962	X_17027962_SNP [dm3] X_17133929_SNP [dm6]	A	G	3.407e^-5	0.546	INTRON CG5004
3R	26878386	3R_26878386_SNP [dm3] 3R_31052664_SNP [dm6]	T	A	3.452e^-5	0.546	UTR_3_PRIME l_3_03670 DOWNSTREAM Aph-4	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	26936588	3R_26936588_SNP [dm3] 3R_31110866_SNP [dm6]	C	T	3.463e^-5	0.546	INTERGENIC
3R	13965223	3R_13965223_SNP [dm3] 3R_18139501_SNP [dm6]	A	G	3.584e^-5	0.546	INTERGENIC
3L	5811587	3L_5811587_SNP [dm3] 3L_5818487_SNP [dm6]	T	A	3.593e^-5	0.546	INTRON vn
3R	9951634	3R_9951634_SNP [dm3] 3R_14125912_SNP [dm6]	C	A	3.610e^-5	0.546	UTR_5_PRIME RpII140 UPSTREAM 140up	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15886249	3L_15886249_SNP [dm3] 3L_15893149_SNP [dm6]	T	C	3.677e^-5	0.546	INTRON pHCl
3R	17252994	3R_17252994_SNP [dm3] 3R_21427272_SNP [dm6]	A	G	3.682e^-5	0.546	INTRON lbl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	19204280	3R_19204280_SNP [dm3] 3R_23378558_SNP [dm6]	A	T	3.690e^-5	0.546	NON_SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_sens
3R	13689398	3R_13689398_SNP [dm3] 3R_17863676_SNP [dm6]	G	C	3.717e^-5	0.546	INTRON tinc
2R	9253988	2R_9253988_SNP [dm3] 2R_13366483_SNP [dm6]	T	C	3.721e^-5	0.546	INTERGENIC
3L	6757312	3L_6757312_SNP [dm3] 3L_6764212_SNP [dm6]	T	C	3.730e^-5	0.546	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	8781394	2R_8781394_SNP [dm3] 2R_12893889_SNP [dm6]	A	T	3.757e^-5	0.546	INTRON vg
3L	7002669	3L_7002669_SNP [dm3] 3L_7009569_SNP [dm6]	T	C	3.805e^-5	0.549	INTRON Mp
3L	10436873	3L_10436873_SNP [dm3] 3L_10443773_SNP [dm6]	C	T	3.836e^-5	0.549	INTERGENIC
2L	1024350	2L_1024350_SNP [dm3] 2L_1024350_SNP [dm6]	A	C	3.911e^-5	0.555	INTRON IA-2
2R	19179567	2R_19179567_DEL [dm3] 2R_23292044_DEL [dm6]	CC	C	3.934e^-5	0.555	UPSTREAM CR44783 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13745804	2R_13745804_SNP [dm3] 2R_17858299_SNP [dm6]	C	T	4.000e^-5	0.559	INTRON olf186-F
2L	7945994	2L_7945994_SNP [dm3] 2L_7945994_SNP [dm6]	G	A	4.021e^-5	0.559	INTRON Snoo
3R	17651608	3R_17651608_SNP [dm3] 3R_21825886_SNP [dm6]	C	T	4.079e^-5	0.562	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv
3L	18685820	3L_18685820_SNP [dm3] 3L_18692720_SNP [dm6]	C	A	4.202e^-5	0.575	DOWNSTREAM CR43987 INTERGENIC
X	21305044	X_21305044_SNP [dm3] X_21434017_SNP [dm6]	T	A	4.288e^-5	0.579	INTRON CG42343
2L	3278336	2L_3278336_SNP [dm3] 2L_3278336_SNP [dm6]	G	A	4.314e^-5	0.579	SYNONYMOUS_CODING CG3332 INTRON CG3332
X	21305062	X_21305062_SNP [dm3] X_21434035_SNP [dm6]	C	T	4.386e^-5	0.579	INTRON CG42343
2R	12365006	2R_12365006_SNP [dm3] 2R_16477501_SNP [dm6]	C	G	4.388e^-5	0.579	INTERGENIC
3L	6757158	3L_6757158_SNP [dm3] 3L_6764058_SNP [dm6]	A	G	4.389e^-5	0.579	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA
3R	26815138	3R_26815138_SNP [dm3] 3R_30989416_SNP [dm6]	A	T	4.417e^-5	0.579	DOWNSTREAM CG31008 INTRON 5-HT7
2L	10050217	2L_10050217_SNP [dm3] 2L_10050217_SNP [dm6]	A	G	4.506e^-5	0.587	NON_SYNONYMOUS_CODING CG33301	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15759532	3R_15759532_SNP [dm3] 3R_19933810_SNP [dm6]	A	G	4.551e^-5	0.589	SYNONYMOUS_CODING mira INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9561210	2L_9561210_SNP [dm3] 2L_9561210_SNP [dm6]	T	C	4.585e^-5	0.589	UPSTREAM jp INTRON jp
2R	17756124	2R_17756124_SNP [dm3] 2R_21868619_SNP [dm6]	G	T	4.634e^-5	0.591	INTERGENIC
2R	8483772	2R_8483772_SNP [dm3] 2R_12596267_SNP [dm6]	T	G	4.757e^-5	0.601	UPSTREAM CR43909 INTRON Amph
3R	23215296	3R_23215296_SNP [dm3] 3R_27389574_SNP [dm6]	G	C	4.777e^-5	0.601	INTRON side	TF binding site mE1_TFBS_chinmo
X	17028314	X_17028314_SNP [dm3] X_17134281_SNP [dm6]	T	C	4.860e^-5	0.607	SYNONYMOUS_CODING CG5004
3L	6757273	3L_6757273_SNP [dm3] 3L_6764173_SNP [dm6]	G	A	4.903e^-5	0.607	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	20242074	X_20242074_DEL [dm3] X_20371047_DEL [dm6]	CAGC	C	4.922e^-5	0.607	INTERGENIC
3L	8797616	3L_8797616_SNP [dm3] 3L_8804516_SNP [dm6]	A	G	4.953e^-5	0.607	UPSTREAM CG34427 & 1 other DOWNSTREAM CG34426 INTERGENIC
3R	17238700	3R_17238700_SNP [dm3] 3R_21412978_SNP [dm6]	G	T	5.049e^-5	0.615	INTRON lbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12479186	2L_12479186_SNP [dm3] 2L_12479186_SNP [dm6]	C	T	5.089e^-5	0.615	INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18189865	3R_18189865_SNP [dm3] 3R_22364143_SNP [dm6]	C	T	5.169e^-5	0.615	DOWNSTREAM CG5382 INTRON CG7071 & 1 other	TF binding site mE1_TFBS_sens
2L	4737009	2L_4737009_SNP [dm3] 2L_4737009_SNP [dm6]	C	T	5.170e^-5	0.615	INTRON CG15630	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	4876024	3L_4876024_SNP [dm3] 3L_4876024_SNP [dm6]	G	A	5.258e^-5	0.615	INTRON CG17150
2L	4121289	2L_4121289_SNP [dm3] 2L_4121289_SNP [dm6]	C	A	5.340e^-5	0.615	SYNONYMOUS_CODING Sr-CIII UPSTREAM Sr-CI
X	17565317	X_17565317_SNP [dm3] X_17671284_SNP [dm6]	A	G	5.413e^-5	0.615	SYNONYMOUS_CODING CG12990
3R	26878120	3R_26878120_SNP [dm3] 3R_31052398_SNP [dm6]	G	T	5.432e^-5	0.615	NON_SYNONYMOUS_CODING Aph-4 DOWNSTREAM l_3_03670	TF binding site mE1_TFBS_sbb
2L	12582825	2L_12582825_SNP [dm3] 2L_12582825_SNP [dm6]	A	T	5.542e^-5	0.615	EXON CR44595 & 1 other
2L	12582782	2L_12582782_SNP [dm3] 2L_12582782_SNP [dm6]	A	G	5.590e^-5	0.615	EXON CR44595 & 1 other
3L	1403624	3L_1403624_SNP [dm3] 3L_1403624_SNP [dm6]	A	G	5.590e^-5	0.615	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	16213969	2L_16213969_SNP [dm3] 2L_16213969_SNP [dm6]	A	G	5.590e^-5	0.615	DOWNSTREAM CG31819 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6757057	3L_6757057_SNP [dm3] 3L_6763957_SNP [dm6]	G	T	5.599e^-5	0.615	UPSTREAM CG32392 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	1093771	2L_1093771_SNP [dm3] 2L_1093771_SNP [dm6]	G	C	5.629e^-5	0.615	INTRON CG4629
2R	12366382	2R_12366382_SNP [dm3] 2R_16478877_SNP [dm6]	T	C	5.653e^-5	0.615	INTERGENIC
3R	20834602	3R_20834602_SNP [dm3] 3R_25008880_SNP [dm6]	C	G	5.658e^-5	0.615	INTRON tnc	TF binding site mE1_TFBS_chinmo
2R	8777139	2R_8777139_INS [dm3] 2R_12889634_INS [dm6]	A	AA	5.676e^-5	0.615	INTRON vg	TF binding site BDTNP1_TFBS_da
X	9096643	X_9096643_SNP [dm3] X_9202610_SNP [dm6]	T	A	5.728e^-5	0.615	UPSTREAM su_r_ INTERGENIC
X	10567464	X_10567464_SNP [dm3] X_10673431_SNP [dm6]	T	A	5.819e^-5	0.615	UTR_5_PRIME CG12637 INTRON X11Lbeta	TF binding site BDTNP1_TFBS_twi
X	8716329	X_8716329_SNP [dm3] X_8822296_SNP [dm6]	G	A	5.823e^-5	0.615	INTERGENIC
3R	15279391	3R_15279391_SNP [dm3] 3R_19453669_SNP [dm6]	A	T	5.829e^-5	0.615	INTRON CG31221
2L	16162246	2L_16162246_SNP [dm3] 2L_16162246_SNP [dm6]	C	T	5.850e^-5	0.615	INTERGENIC
3R	9683886	3R_9683886_SNP [dm3] 3R_13858164_SNP [dm6]	T	C	5.903e^-5	0.615	INTERGENIC
X	19163537	X_19163537_SNP [dm3] X_19269504_SNP [dm6]	T	C	5.921e^-5	0.615	SYNONYMOUS_CODING Vav UPSTREAM CG8010	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	11828964	3R_11828964_SNP [dm3] 3R_16003242_SNP [dm6]	C	T	5.936e^-5	0.615	SYNONYMOUS_CODING srp UTR_3_PRIME srp	TF binding site mE1_TFBS_cad
2L	15819726	2L_15819726_SNP [dm3] 2L_15819726_SNP [dm6]	C	A	5.957e^-5	0.615	INTERGENIC	TF binding site mE1_TFBS_run
3L	18749747	3L_18749747_INS [dm3] 3L_18756647_INS [dm6]	A	AGCAA	6.024e^-5	0.615	INTRON ftz-f1	TF binding site BDTNP1_TFBS_dl
2L	16921730	2L_16921730_SNP [dm3] 2L_16921730_SNP [dm6]	C	T	6.026e^-5	0.615	INTERGENIC
2R	9261718	2R_9261718_SNP [dm3] 2R_13374213_SNP [dm6]	T	C	6.042e^-5	0.615	INTERGENIC
2R	12047027	2R_12047027_SNP [dm3] 2R_16159522_SNP [dm6]	A	G	6.063e^-5	0.615	UPSTREAM CG10734 INTRON lbk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	4376064	2L_4376064_SNP [dm3] 2L_4376064_SNP [dm6]	T	A	6.109e^-5	0.615	INTRON Traf4	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	3513727	2L_3513727_SNP [dm3] 2L_3513727_SNP [dm6]	G	A	6.113e^-5	0.615	SYNONYMOUS_CODING CG33123	TF binding site mE1_TFBS_cad
3R	25557524	3R_25557524_SNP [dm3] 3R_29731802_SNP [dm6]	G	A	6.182e^-5	0.615	SYNONYMOUS_CODING Kul UTR_3_PRIME Kul	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10675471	3L_10675471_SNP [dm3] 3L_10682371_SNP [dm6]	G	A	6.186e^-5	0.615	INTRON simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	15759517	3R_15759517_SNP [dm3] 3R_19933795_SNP [dm6]	G	A	6.195e^-5	0.615	SYNONYMOUS_CODING mira INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17782654	2L_17782654_INS [dm3] 2L_17782654_INS [dm6]	C	CTGTTTAAGTCACAGC...	6.262e^-5	0.615	INTERGENIC
3R	19204289	3R_19204289_SNP [dm3] 3R_23378567_SNP [dm6]	G	C	6.263e^-5	0.615	NON_SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_sens
X	2463412	X_2463412_SNP [dm3] X_2569379_SNP [dm6]	A	G	6.266e^-5	0.615	INTRON Pdfr
X	10567491	X_10567491_SNP [dm3] X_10673458_SNP [dm6]	G	A	6.327e^-5	0.618	UTR_5_PRIME CG12637 INTRON X11Lbeta	TF binding site BDTNP1_TFBS_twi
3R	9950932	3R_9950932_SNP [dm3] 3R_14125210_SNP [dm6]	G	A	6.438e^-5	0.624	SYNONYMOUS_CODING 140up UPSTREAM RpII140 DOWNSTREAM twf
3L	8792498	3L_8792498_SNP [dm3] 3L_8799398_SNP [dm6]	C	G	6.449e^-5	0.624	SYNONYMOUS_CODING CG13310 DOWNSTREAM Fhos
3R	11827789	3R_11827789_SNP [dm3] 3R_16002067_SNP [dm6]	A	C	6.492e^-5	0.624	INTRON srp	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	6923260	3R_6923260_SNP [dm3] 3R_11097538_SNP [dm6]	G	A	6.524e^-5	0.624	INTERGENIC
2L	1093784	2L_1093784_SNP [dm3] 2L_1093784_SNP [dm6]	C	A	6.647e^-5	0.631	INTRON CG4629
3L	2773732	3L_2773732_SNP [dm3] 3L_2773732_SNP [dm6]	C	A	6.657e^-5	0.631	SYNONYMOUS_CODING CG12093 UPSTREAM Atg2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	282807	3R_282807_SNP [dm3] 3R_4457085_SNP [dm6]	T	A	6.710e^-5	0.632	INTRON CG31522	TF binding site mE1_TFBS_cad
3R	26942505	3R_26942505_SNP [dm3] 3R_31116783_SNP [dm6]	A	T	6.777e^-5	0.636	INTERGENIC
2L	9654022	2L_9654022_SNP [dm3] 2L_9654022_SNP [dm6]	T	C	6.907e^-5	0.636	INTRON Apoltp
3L	5966535	3L_5966535_SNP [dm3] 3L_5973435_SNP [dm6]	A	T	6.913e^-5	0.636	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	2091195	3L_2091195_SNP [dm3] 3L_2091195_SNP [dm6]	G	A	6.920e^-5	0.636	INTRON sls	TF binding site mE1_TFBS_HSA
3R	16376967	3R_16376967_SNP [dm3] 3R_20551245_SNP [dm6]	A	G	6.990e^-5	0.636	UPSTREAM Stat92E INTRON Stat92E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
2R	17299419	2R_17299419_SNP [dm3] 2R_21411914_SNP [dm6]	A	C	7.010e^-5	0.636	INTRON Sdc	TF binding site mE1_TFBS_inv
3R	22694245	3R_22694245_SNP [dm3] 3R_26868523_SNP [dm6]	A	G	7.058e^-5	0.636	SYNONYMOUS_CODING His2Av DOWNSTREAM BM-40-SPARC
3R	25573993	3R_25573993_SNP [dm3] 3R_29748271_SNP [dm6]	G	C	7.094e^-5	0.636	SYNONYMOUS_CODING ATPsyn-gamma UPSTREAM yata DOWNSTREAM IntS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	24217875	3R_24217875_SNP [dm3] 3R_28392153_SNP [dm6]	G	A	7.168e^-5	0.636	INTERGENIC
3R	26810219	3R_26810219_SNP [dm3] 3R_30984497_SNP [dm6]	C	T	7.242e^-5	0.636	INTRON 5-HT7
2L	11057310	2L_11057310_SNP [dm3] 2L_11057310_SNP [dm6]	T	C	7.257e^-5	0.636	UPSTREAM Samuel INTRON Samuel	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	9833423	2R_9833423_SNP [dm3] 2R_13945918_SNP [dm6]	A	G	7.284e^-5	0.636	UTR_3_PRIME AGO1
2L	12401804	2L_12401804_SNP [dm3] 2L_12401804_SNP [dm6]	C	A	7.317e^-5	0.636	UTR_3_PRIME Pkd2
3L	9896484	3L_9896484_SNP [dm3] 3L_9903384_SNP [dm6]	A	T	7.348e^-5	0.636	DOWNSTREAM nudE INTERGENIC
3R	26871156	3R_26871156_SNP [dm3] 3R_31045434_SNP [dm6]	T	A	7.387e^-5	0.636	UPSTREAM CG33920 INTRON CanA1
2R	8991961	2R_8991961_SNP [dm3] 2R_13104456_SNP [dm6]	A	G	7.502e^-5	0.636	NON_SYNONYMOUS_CODING CG44341
2L	12582877	2L_12582877_SNP [dm3] 2L_12582877_SNP [dm6]	G	A	7.529e^-5	0.636	DOWNSTREAM CR44596 EXON CR44595
2R	6449994	2R_6449994_SNP [dm3] 2R_10562489_SNP [dm6]	T	G	7.561e^-5	0.636	INTRON psq	TF binding site BDTNP1_TFBS_twi
2L	7903404	2L_7903404_SNP [dm3] 2L_7903404_SNP [dm6]	G	C	7.566e^-5	0.636	INTRON Snoo
2R	14170768	2R_14170768_SNP [dm3] 2R_18283263_SNP [dm6]	A	T	7.581e^-5	0.636	INTRON sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24364663	3R_24364663_SNP [dm3] 3R_28538941_SNP [dm6]	C	T	7.586e^-5	0.636	INTRON Ppn
3R	26891512	3R_26891512_INS [dm3] 3R_31065790_INS [dm6]	T	TGTAT	7.621e^-5	0.636	INTRON Sox100B
2L	4241787	2L_4241787_SNP [dm3] 2L_4241787_SNP [dm6]	T	C	7.636e^-5	0.636	UPSTREAM CR45720 DOWNSTREAM CR44058 INTRON CR44058
2R	9833422	2R_9833422_SNP [dm3] 2R_13945917_SNP [dm6]	T	A	7.644e^-5	0.636	UTR_3_PRIME AGO1
2R	10292473	2R_10292473_SNP [dm3] 2R_14404968_SNP [dm6]	A	G	7.700e^-5	0.636	INTERGENIC
2R	8777036	2R_8777036_SNP [dm3] 2R_12889531_SNP [dm6]	G	C	7.703e^-5	0.636	INTRON vg	regulatory region FlyBase TF binding site mE1_TFBS_sens
3L	5966558	3L_5966558_INS [dm3] 3L_5973458_INS [dm6]	T	TATCT	7.712e^-5	0.636	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3R	23212193	3R_23212193_SNP [dm3] 3R_27386471_SNP [dm6]	G	A	7.714e^-5	0.636	INTRON side
3R	16351119	3R_16351119_SNP [dm3] 3R_20525397_SNP [dm6]	C	T	7.762e^-5	0.636	INTERGENIC
2R	11000152	2R_11000152_SNP [dm3] 2R_15112647_SNP [dm6]	A	G	7.794e^-5	0.636	INTERGENIC
3L	6757078	3L_6757078_SNP [dm3] 3L_6763978_SNP [dm6]	G	C	7.800e^-5	0.636	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA
3R	13689456	3R_13689456_SNP [dm3] 3R_17863734_SNP [dm6]	G	A	7.888e^-5	0.639	INTRON tinc
3L	8792594	3L_8792594_SNP [dm3] 3L_8799494_SNP [dm6]	A	T	7.917e^-5	0.639	SYNONYMOUS_CODING CG13310 DOWNSTREAM Fhos
2L	12582887	2L_12582887_SNP [dm3] 2L_12582887_SNP [dm6]	C	A	7.939e^-5	0.639	DOWNSTREAM CR44596 EXON CR44595
2R	7847998	2R_7847998_SNP [dm3] 2R_11960493_SNP [dm6]	C	A	8.097e^-5	0.64	INTRON CG13188
3L	1291809	3L_1291809_SNP [dm3] 3L_1291809_SNP [dm6]	C	T	8.098e^-5	0.64	SYNONYMOUS_CODING CG32333	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1291830	3L_1291830_SNP [dm3] 3L_1291830_SNP [dm6]	T	C	8.098e^-5	0.64	SYNONYMOUS_CODING CG32333	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12093563	3L_12093563_SNP [dm3] 3L_12100463_SNP [dm6]	T	C	8.099e^-5	0.64	INTERGENIC
3R	10219205	3R_10219205_INS [dm3] 3R_14393483_INS [dm6]	A	AGGGAAATTAG...	8.117e^-5	0.64	SPLICE_SITE_REGION cv-c INTRON cv-c
2L	9458564	2L_9458564_SNP [dm3] 2L_9458564_SNP [dm6]	A	G	8.300e^-5	0.648	INTRON numb
3R	20330268	3R_20330268_SNP [dm3] 3R_24504546_SNP [dm6]	G	A	8.304e^-5	0.648	INTERGENIC
3R	26831179	3R_26831179_SNP [dm3] 3R_31005457_SNP [dm6]	C	T	8.328e^-5	0.648	INTRON 5-HT7
2L	17789691	2L_17789691_SNP [dm3] 2L_17789691_SNP [dm6]	A	C	8.412e^-5	0.649	INTRON CadN2
2L	9654015	2L_9654015_SNP [dm3] 2L_9654015_SNP [dm6]	T	A	8.455e^-5	0.649	INTRON Apoltp
3L	14557276	3L_14557276_SNP [dm3] 3L_14564176_SNP [dm6]	T	C	8.510e^-5	0.649	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	7894023	3L_7894023_SNP [dm3] 3L_7900923_SNP [dm6]	C	T	8.603e^-5	0.649	SYNONYMOUS_CODING pbl INTRON pbl
3L	5966665	3L_5966665_SNP [dm3] 3L_5973565_SNP [dm6]	T	G	8.603e^-5	0.649	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2R	16290050	2R_16290050_SNP [dm3] 2R_20402545_SNP [dm6]	G	T	8.611e^-5	0.649	INTERGENIC
2L	12582916	2L_12582916_SNP [dm3] 2L_12582916_SNP [dm6]	G	T	8.655e^-5	0.649	DOWNSTREAM CR44596 EXON CR44595
2R	9248255	2R_9248255_SNP [dm3] 2R_13360750_SNP [dm6]	G	C	8.664e^-5	0.649	INTERGENIC
3R	6796100	3R_6796100_SNP [dm3] 3R_10970378_SNP [dm6]	A	C	8.765e^-5	0.649	DOWNSTREAM CR45561 INTERGENIC
2R	9433903	2R_9433903_SNP [dm3] 2R_13546398_SNP [dm6]	A	G	8.803e^-5	0.649	UPSTREAM CG6145 INTRON CG6145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3R	21766516	3R_21766516_SNP [dm3] 3R_25940794_SNP [dm6]	T	A	8.825e^-5	0.649	INTRON CCAP-R
3R	13647767	3R_13647767_SNP [dm3] 3R_17822045_SNP [dm6]	T	A	8.829e^-5	0.649	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	609874	2R_609874_SNP [dm3] 2R_4722369_SNP [dm6]	G	A	8.838e^-5	0.649	INTRON Nipped-B
3L	4994715	3L_4994715_SNP [dm3] 3L_4994715_SNP [dm6]	C	T	8.842e^-5	0.649	SYNONYMOUS_CODING CG32232 INTRON Con	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
3R	26934094	3R_26934094_SNP [dm3] 3R_31108372_SNP [dm6]	G	A	8.856e^-5	0.649	SYNONYMOUS_CODING CG11318	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	20331319	3R_20331319_SNP [dm3] 3R_24505597_SNP [dm6]	G	A	8.900e^-5	0.649	INTERGENIC
2R	20384295	2R_20384295_SNP [dm3] 2R_24496772_SNP [dm6]	A	G	9.067e^-5	0.655	SYNONYMOUS_CODING Crtp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4640033	3L_4640033_SNP [dm3] 3L_4640033_SNP [dm6]	C	T	9.076e^-5	0.655	INTRON axo
3R	23211028	3R_23211028_DEL [dm3] 3R_27385306_DEL [dm6]	TCTGGTTTT	T	9.094e^-5	0.655	INTRON side
3R	14494302	3R_14494302_SNP [dm3] 3R_18668580_SNP [dm6]	G	A	9.114e^-5	0.655	UPSTREAM CG7702 DOWNSTREAM CG31231 INTRON CG31229 EXON CR45028
2L	11552298	2L_11552298_SNP [dm3] 2L_11552298_SNP [dm6]	C	A	9.227e^-5	0.656	INTERGENIC
X	16697821	X_16697821_SNP [dm3] X_16803788_SNP [dm6]	T	A	9.247e^-5	0.656	NON_SYNONYMOUS_CODING CG13005 UPSTREAM CG9125	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	10066439	3L_10066439_SNP [dm3] 3L_10073339_SNP [dm6]	A	C	9.247e^-5	0.656	INTRON dpr6
2R	11829844	2R_11829844_SNP [dm3] 2R_15942339_SNP [dm6]	A	T	9.274e^-5	0.656	UPSTREAM CG8299 & 1 other INTERGENIC
3L	6757537	3L_6757537_SNP [dm3] 3L_6764437_SNP [dm6]	C	A	9.368e^-5	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Stat92E
X	11182742	X_11182742_SNP [dm3] X_11288709_SNP [dm6]	G	T	9.489e^-5	0.661	INTRON CG44422
3R	26864590	3R_26864590_SNP [dm3] 3R_31038868_SNP [dm6]	C	G	9.530e^-5	0.661	UPSTREAM CanA1 INTERGENIC
2L	12182857	2L_12182857_SNP [dm3] 2L_12182857_SNP [dm6]	G	A	9.561e^-5	0.661	INTRON aret
3L	6757285	3L_6757285_SNP [dm3] 3L_6764185_SNP [dm6]	G	C	9.574e^-5	0.661	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	14962447	X_14962447_SNP [dm3] X_15068414_SNP [dm6]	G	A	9.672e^-5	0.661	NON_SYNONYMOUS_CODING dob DOWNSTREAM Lsd-2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26877831	3R_26877831_SNP [dm3] 3R_31052109_SNP [dm6]	G	T	9.677e^-5	0.661	SYNONYMOUS_CODING Aph-4 UPSTREAM mir-4948 DOWNSTREAM l_3_03670	TF binding site mE1_TFBS_cad
3R	13849909	3R_13849909_SNP [dm3] 3R_18024187_SNP [dm6]	C	T	9.829e^-5	0.661	SYNONYMOUS_CODING CG7794 DOWNSTREAM CG7785	TF binding site mE1_TFBS_cad
2L	15061971	2L_15061971_SNP [dm3] 2L_15061971_SNP [dm6]	T	G	9.906e^-5	0.661	DOWNSTREAM vig INTRON vas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
3R	18129074	3R_18129074_SNP [dm3] 3R_22303352_SNP [dm6]	C	T	9.964e^-5	0.661	INTRON CG7084
2L	12401860	2L_12401860_SNP [dm3] 2L_12401860_SNP [dm6]	T	C	1.003e^-4	0.661	UTR_3_PRIME Pkd2
X	9105089	X_9105089_SNP [dm3] X_9211056_SNP [dm6]	C	T	1.004e^-4	0.661	UPSTREAM CG12119 INTERGENIC
2R	12362124	2R_12362124_SNP [dm3] 2R_16474619_SNP [dm6]	G	T	1.006e^-4	0.661	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	26786388	3R_26786388_SNP [dm3] 3R_30960666_SNP [dm6]	A	T	1.012e^-4	0.661	NON_SYNONYMOUS_CODING CG15548
3R	17252969	3R_17252969_SNP [dm3] 3R_21427247_SNP [dm6]	G	A	1.015e^-4	0.661	INTRON lbl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	16921207	2L_16921207_SNP [dm3] 2L_16921207_SNP [dm6]	C	T	1.025e^-4	0.661	INTERGENIC
2L	12401819	2L_12401819_DEL [dm3] 2L_12401819_DEL [dm6]	TG	T	1.029e^-4	0.661	UTR_3_PRIME Pkd2
3L	14160905	3L_14160905_SNP [dm3] 3L_14167805_SNP [dm6]	T	G	1.037e^-4	0.661	INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs
3R	16396961	3R_16396961_SNP [dm3] 3R_20571239_SNP [dm6]	G	C	1.039e^-4	0.661	SYNONYMOUS_CODING CG5191	TF binding site mE1_TFBS_chinmo
3R	15717890	3R_15717890_SNP [dm3] 3R_19892168_SNP [dm6]	G	A	1.041e^-4	0.661	INTRON CG4733
3L	7852896	3L_7852896_INS [dm3] 3L_7859796_INS [dm6]	A	AA	1.048e^-4	0.661	INTRON Pdp1
X	2763498	X_2763498_SNP [dm3] X_2869465_SNP [dm6]	G	A	1.049e^-4	0.661	INTRON kirre
3R	21013066	3R_21013066_SNP [dm3] 3R_25187344_SNP [dm6]	T	C	1.052e^-4	0.661	INTRON lobo & 1 other	TF binding site BDTNP1_TFBS_dl
2L	9654026	2L_9654026_SNP [dm3] 2L_9654026_SNP [dm6]	G	T	1.053e^-4	0.661	INTRON Apoltp
3L	14165541	3L_14165541_SNP [dm3] 3L_14172441_SNP [dm6]	T	G	1.055e^-4	0.661	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11571893	3L_11571893_SNP [dm3] 3L_11578793_SNP [dm6]	G	C	1.056e^-4	0.661	UPSTREAM CG33270 DOWNSTREAM CG43390 INTERGENIC
2L	8879439	2L_8879439_SNP [dm3] 2L_8879439_SNP [dm6]	A	C	1.058e^-4	0.661	INTERGENIC
3R	17245949	3R_17245949_SNP [dm3] 3R_21420227_SNP [dm6]	A	T	1.058e^-4	0.661	INTRON lbl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9886469	2R_9886469_SNP [dm3] 2R_13998964_SNP [dm6]	T	C	1.066e^-4	0.661	INTRON mam	TF binding site BDTNP1_TFBS_dl
2L	9188435	2L_9188435_DEL [dm3] 2L_9188435_DEL [dm6]	TA	T	1.067e^-4	0.661	INTRON tai
3L	7067847	3L_7067847_SNP [dm3] 3L_7074747_SNP [dm6]	T	G	1.068e^-4	0.661	SPLICE_SITE_ACCEPTOR CG34030 INTRON CG8641 & 1 other
X	10411688	X_10411688_SNP [dm3] X_10517655_SNP [dm6]	A	T	1.071e^-4	0.661	INTRON spri	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10192885	2L_10192885_SNP [dm3] 2L_10192885_SNP [dm6]	A	T	1.074e^-4	0.661	INTRON Sur
2L	10050225	2L_10050225_SNP [dm3] 2L_10050225_SNP [dm6]	C	T	1.078e^-4	0.661	NON_SYNONYMOUS_CODING CG33301	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9581246	3L_9581246_SNP [dm3] 3L_9588146_SNP [dm6]	A	G	1.079e^-4	0.661	INTRON CG42673	TF binding site mE1_TFBS_chinmo
3R	26778992	3R_26778992_SNP [dm3] 3R_30953270_SNP [dm6]	C	A	1.080e^-4	0.661	INTERGENIC
3L	10676813	3L_10676813_SNP [dm3] 3L_10683713_SNP [dm6]	C	T	1.081e^-4	0.661	INTRON simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	13965330	3R_13965330_SNP [dm3] 3R_18139608_SNP [dm6]	G	A	1.083e^-4	0.661	INTERGENIC
X	6157570	X_6157570_SNP [dm3] X_6263537_SNP [dm6]	T	G	1.088e^-4	0.661	INTRON schlank
3R	6637635	3R_6637635_SNP [dm3] 3R_10811913_SNP [dm6]	C	T	1.092e^-4	0.661	NON_SYNONYMOUS_CODING CG14693 UTR_3_PRIME CG14693
3R	18128426	3R_18128426_SNP [dm3] 3R_22302704_SNP [dm6]	G	A	1.092e^-4	0.661	INTRON CG7084	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9203115	2R_9203115_SNP [dm3] 2R_13315610_SNP [dm6]	G	A	1.096e^-4	0.661	INTERGENIC
2R	6851395	2R_6851395_SNP [dm3] 2R_10963890_SNP [dm6]	G	C	1.098e^-4	0.661	INTERGENIC
3L	4530612	3L_4530612_SNP [dm3] 3L_4530612_SNP [dm6]	T	A	1.103e^-4	0.661	INTRON Tie	TF binding site mE1_TFBS_inv
2R	11789572	2R_11789572_SNP [dm3] 2R_15902067_SNP [dm6]	T	C	1.105e^-4	0.661	INTRON sli	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5466017	3R_5466017_SNP [dm3] 3R_9640295_SNP [dm6]	A	T	1.107e^-4	0.661	UPSTREAM Dh44 INTRON Dh44
3L	9987082	3L_9987082_SNP [dm3] 3L_9993982_SNP [dm6]	T	A	1.111e^-4	0.661	INTRON dpr6
3L	9987655	3L_9987655_SNP [dm3] 3L_9994555_SNP [dm6]	A	C	1.111e^-4	0.661	INTRON dpr6
3R	14368897	3R_14368897_SNP [dm3] 3R_18543175_SNP [dm6]	C	A	1.114e^-4	0.661	INTRON fru
2L	8627106	2L_8627106_SNP [dm3] 2L_8627106_SNP [dm6]	A	G	1.123e^-4	0.661	INTRON Sema-1a
2L	7488670	2L_7488670_SNP [dm3] 2L_7488670_SNP [dm6]	A	T	1.127e^-4	0.661	INTRON Ziz
2L	8879380	2L_8879380_SNP [dm3] 2L_8879380_SNP [dm6]	G	C	1.132e^-4	0.661	INTERGENIC
3R	20330289	3R_20330289_SNP [dm3] 3R_24504567_SNP [dm6]	G	A	1.134e^-4	0.661	INTERGENIC
3R	25557449	3R_25557449_SNP [dm3] 3R_29731727_SNP [dm6]	T	C	1.138e^-4	0.661	SYNONYMOUS_CODING Kul UTR_3_PRIME Kul	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25946474	3R_25946474_SNP [dm3] 3R_30120752_SNP [dm6]	C	T	1.138e^-4	0.661	SYNONYMOUS_CODING sima UTR_3_PRIME sima	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6757127	3L_6757127_SNP [dm3] 3L_6764027_SNP [dm6]	T	C	1.140e^-4	0.661	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA
3R	26938106	3R_26938106_DEL [dm3] 3R_31112384_DEL [dm6]	CC	C	1.145e^-4	0.661	INTERGENIC	TF binding site mE1_TFBS_inv
3L	9987260	3L_9987260_SNP [dm3] 3L_9994160_SNP [dm6]	T	A	1.145e^-4	0.661	INTRON dpr6
2L	4392059	2L_4392059_SNP [dm3] 2L_4392059_SNP [dm6]	C	T	1.148e^-4	0.661	SYNONYMOUS_CODING Tps1 DOWNSTREAM CG3652	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25470262	3R_25470262_SNP [dm3] 3R_29644540_SNP [dm6]	G	A	1.148e^-4	0.661	INTRON Dop1R2
2L	9112632	2L_9112632_SNP [dm3] 2L_9112632_SNP [dm6]	A	G	1.149e^-4	0.661	SYNONYMOUS_CODING Or30a
3L	20523337	3L_20523337_SNP [dm3] 3L_20530237_SNP [dm6]	T	C	1.160e^-4	0.665	INTRON Rcd2	TF binding site BDTNP1_TFBS_dl
3R	25574053	3R_25574053_SNP [dm3] 3R_29748331_SNP [dm6]	A	G	1.174e^-4	0.667	SYNONYMOUS_CODING ATPsyn-gamma UPSTREAM yata DOWNSTREAM IntS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26912605	3R_26912605_SNP [dm3] 3R_31086883_SNP [dm6]	C	T	1.176e^-4	0.667	INTERGENIC
3L	9987440	3L_9987440_SNP [dm3] 3L_9994340_SNP [dm6]	A	G	1.183e^-4	0.667	INTRON dpr6
2L	3464695	2L_3464695_SNP [dm3] 2L_3464695_SNP [dm6]	G	A	1.183e^-4	0.667	SYNONYMOUS_CODING msl-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	7613989	2R_7613989_SNP [dm3] 2R_11726484_SNP [dm6]	G	T	1.188e^-4	0.667	DOWNSTREAM pyr INTERGENIC	TF binding site mE1_TFBS_cad
3R	24136801	3R_24136801_SNP [dm3] 3R_28311079_SNP [dm6]	G	A	1.191e^-4	0.667	INTERGENIC	TF binding site mE1_TFBS_bab1
3L	13181535	3L_13181535_SNP [dm3] 3L_13188435_SNP [dm6]	A	T	1.201e^-4	0.667	INTERGENIC
3L	4550019	3L_4550019_SNP [dm3] 3L_4550019_SNP [dm6]	A	C	1.202e^-4	0.667	UPSTREAM CG11357 INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2L	4291104	2L_4291104_SNP [dm3] 2L_4291104_SNP [dm6]	A	C	1.209e^-4	0.667	INTRON tutl
X	9497046	X_9497046_SNP [dm3] X_9603013_SNP [dm6]	T	A	1.211e^-4	0.667	SYNONYMOUS_CODING Gga	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	11185428	2L_11185428_DEL [dm3] 2L_11185428_DEL [dm6]	TATT	T	1.213e^-4	0.667	INTRON Ca-beta	TF binding site BDTNP1_TFBS_prd mE1_TFBS_sens
2R	12742404	2R_12742404_SNP [dm3] 2R_16854899_SNP [dm6]	A	G	1.214e^-4	0.667	SYNONYMOUS_CODING Fen1 DOWNSTREAM IntS8	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	15886299	3L_15886299_SNP [dm3] 3L_15893199_SNP [dm6]	T	A	1.218e^-4	0.667	INTRON pHCl
3L	15733477	3L_15733477_SNP [dm3] 3L_15740377_SNP [dm6]	C	T	1.223e^-4	0.667	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	9987122	3L_9987122_SNP [dm3] 3L_9994022_SNP [dm6]	A	G	1.226e^-4	0.667	INTRON dpr6
3L	13980577	3L_13980577_SNP [dm3] 3L_13987477_SNP [dm6]	A	G	1.226e^-4	0.667	UPSTREAM CG9040 DOWNSTREAM CG17362 INTRON CG17364
3R	21738158	3R_21738158_SNP [dm3] 3R_25912436_SNP [dm6]	C	T	1.230e^-4	0.667	NON_SYNONYMOUS_CODING CG42235 INTRON CG42235
X	10568569	X_10568569_SNP [dm3] X_10674536_SNP [dm6]	G	C	1.232e^-4	0.667	INTRON X11Lbeta	TF binding site BDTNP1_TFBS_twi
3R	23382884	3R_23382884_DEL [dm3] 3R_27557162_DEL [dm6]	AA	A	1.236e^-4	0.667	INTRON Klp98A	TF binding site BDTNP1_TFBS_z
X	9497043	X_9497043_SNP [dm3] X_9603010_SNP [dm6]	G	A	1.239e^-4	0.667	SYNONYMOUS_CODING Gga	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6756757	3L_6756757_SNP [dm3] 3L_6763657_SNP [dm6]	A	T	1.242e^-4	0.667	UPSTREAM CG32392 INTERGENIC	TF binding site mE1_TFBS_bab1
2L	9561189	2L_9561189_SNP [dm3] 2L_9561189_SNP [dm6]	C	A	1.246e^-4	0.667	UPSTREAM jp INTRON jp
2L	3153814	2L_3153814_SNP [dm3] 2L_3153814_SNP [dm6]	G	T	1.247e^-4	0.667	INTRON Mad
2R	14699927	2R_14699927_SNP [dm3] 2R_18812422_SNP [dm6]	C	T	1.250e^-4	0.667	UPSTREAM CG15096 INTRON CG15096	TF binding site mE1_TFBS_HSA
2L	12584379	2L_12584379_SNP [dm3] 2L_12584379_SNP [dm6]	C	T	1.251e^-4	0.667	DOWNSTREAM CR44595 INTERGENIC
2L	18815330	2L_18815330_SNP [dm3] 2L_18815330_SNP [dm6]	A	G	1.269e^-4	0.667	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	2091178	3L_2091178_SNP [dm3] 3L_2091178_SNP [dm6]	A	G	1.277e^-4	0.667	INTRON sls	TF binding site mE1_TFBS_HSA
3R	15046504	3R_15046504_SNP [dm3] 3R_19220782_SNP [dm6]	T	A	1.281e^-4	0.667	INTRON vib
2L	3608095	2L_3608095_SNP [dm3] 2L_3608095_SNP [dm6]	T	G	1.283e^-4	0.667	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12366375	2R_12366375_SNP [dm3] 2R_16478870_SNP [dm6]	G	C	1.287e^-4	0.667	INTERGENIC
2L	14192640	2L_14192640_SNP [dm3] 2L_14192640_SNP [dm6]	T	C	1.290e^-4	0.667	INTRON Dyrk2
3R	26009326	3R_26009326_SNP [dm3] 3R_30183604_SNP [dm6]	G	C	1.291e^-4	0.667	DOWNSTREAM CR44262 INTERGENIC
3L	15899544	3L_15899544_SNP [dm3] 3L_15906444_SNP [dm6]	C	A	1.296e^-4	0.667	INTRON sff
3L	6757062	3L_6757062_SNP [dm3] 3L_6763962_SNP [dm6]	T	C	1.301e^-4	0.667	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA
3R	13962838	3R_13962838_SNP [dm3] 3R_18137116_SNP [dm6]	G	A	1.305e^-4	0.667	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5454462	2L_5454462_SNP [dm3] 2L_5454462_SNP [dm6]	G	A	1.307e^-4	0.667	INTERGENIC
2R	14170739	2R_14170739_SNP [dm3] 2R_18283234_SNP [dm6]	A	G	1.309e^-4	0.667	SYNONYMOUS_CODING sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12582823	2L_12582823_SNP [dm3] 2L_12582823_SNP [dm6]	T	C	1.309e^-4	0.667	EXON CR44595 & 1 other
3L	6757253	3L_6757253_SNP [dm3] 3L_6764153_SNP [dm6]	A	T	1.314e^-4	0.667	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	13100994	3R_13100994_SNP [dm3] 3R_17275272_SNP [dm6]	T	C	1.316e^-4	0.667	INTERGENIC
2L	17782672	2L_17782672_SNP [dm3] 2L_17782672_SNP [dm6]	T	A	1.328e^-4	0.667	INTERGENIC
X	18431590	X_18431590_SNP [dm3] X_18537557_SNP [dm6]	C	T	1.331e^-4	0.667	INTRON Bx
3L	6758127	3L_6758127_SNP [dm3] 3L_6765027_SNP [dm6]	G	A	1.332e^-4	0.667	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Stat92E
X	10134057	X_10134057_SNP [dm3] X_10240024_SNP [dm6]	A	G	1.334e^-4	0.667	INTRON Hk
3L	8569278	3L_8569278_SNP [dm3] 3L_8576178_SNP [dm6]	A	G	1.344e^-4	0.667	UPSTREAM CG43078 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
X	14962508	X_14962508_SNP [dm3] X_15068475_SNP [dm6]	T	G	1.344e^-4	0.667	SYNONYMOUS_CODING dob DOWNSTREAM Lsd-2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17280709	3L_17280709_SNP [dm3] 3L_17287609_SNP [dm6]	T	A	1.350e^-4	0.667	INTERGENIC
3L	6758125	3L_6758125_SNP [dm3] 3L_6765025_SNP [dm6]	T	C	1.350e^-4	0.667	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Stat92E
X	5478742	X_5478742_SNP [dm3] X_5584709_SNP [dm6]	G	A	1.352e^-4	0.667	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	10568963	X_10568963_SNP [dm3] X_10674930_SNP [dm6]	T	C	1.352e^-4	0.667	INTRON X11Lbeta
2R	9258685	2R_9258685_SNP [dm3] 2R_13371180_SNP [dm6]	A	G	1.360e^-4	0.667	INTERGENIC
2L	9654011	2L_9654011_SNP [dm3] 2L_9654011_SNP [dm6]	A	G	1.363e^-4	0.667	INTRON Apoltp
3L	4550200	3L_4550200_SNP [dm3] 3L_4550200_SNP [dm6]	A	T	1.365e^-4	0.667	UPSTREAM CG11357 INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7898833	2L_7898833_SNP [dm3] 2L_7898833_SNP [dm6]	C	T	1.366e^-4	0.667	INTRON Snoo	TF binding site mE1_TFBS_cad
3R	26659694	3R_26659694_SNP [dm3] 3R_30833972_SNP [dm6]	C	A	1.370e^-4	0.667	INTRON CG15544
3R	25650880	3R_25650880_SNP [dm3] 3R_29825158_SNP [dm6]	G	A	1.374e^-4	0.667	SYNONYMOUS_CODING neo	TF binding site mE1_TFBS_cad
3L	4076727	3L_4076727_SNP [dm3] 3L_4076727_SNP [dm6]	A	T	1.374e^-4	0.667	INTRON Gad1
2L	7488570	2L_7488570_SNP [dm3] 2L_7488570_SNP [dm6]	C	T	1.376e^-4	0.667	INTRON Ziz
X	19619003	X_19619003_SNP [dm3] X_19724970_SNP [dm6]	T	G	1.384e^-4	0.667	SYNONYMOUS_CODING CG12531	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16534000	3R_16534000_SNP [dm3] 3R_20708278_SNP [dm6]	C	T	1.392e^-4	0.667	INTRON Oamb
3R	23382912	3R_23382912_SNP [dm3] 3R_27557190_SNP [dm6]	C	A	1.393e^-4	0.667	INTRON Klp98A
3L	16718394	3L_16718394_SNP [dm3] 3L_16725294_SNP [dm6]	G	T	1.395e^-4	0.667	NON_SYNONYMOUS_CODING CG13031 UTR_3_PRIME CG13026 DOWNSTREAM Dab & 1 other
3R	24131595	3R_24131595_SNP [dm3] 3R_28305873_SNP [dm6]	C	G	1.398e^-4	0.667	INTERGENIC
3R	16059514	3R_16059514_SNP [dm3] 3R_20233792_SNP [dm6]	G	A	1.400e^-4	0.667	INTRON Nlg4
X	6082650	X_6082650_SNP [dm3] X_6188617_SNP [dm6]	G	T	1.401e^-4	0.667	INTRON Ca-alpha1T
2L	3339014	2L_3339014_SNP [dm3] 2L_3339014_SNP [dm6]	A	G	1.401e^-4	0.667	INTRON E23	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
2R	8517284	2R_8517284_SNP [dm3] 2R_12629779_SNP [dm6]	G	A	1.402e^-4	0.667	SYNONYMOUS_CODING muskelin
3R	16534026	3R_16534026_SNP [dm3] 3R_20708304_SNP [dm6]	G	T	1.407e^-4	0.667	INTRON Oamb
3R	14841118	3R_14841118_SNP [dm3] 3R_19015396_SNP [dm6]	T	C	1.409e^-4	0.667	INTRON gukh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	7874997	X_7874997_SNP [dm3] X_7980964_SNP [dm6]	G	A	1.411e^-4	0.667	INTRON sn
3L	3800368	3L_3800368_SNP [dm3] 3L_3800368_SNP [dm6]	T	G	1.415e^-4	0.667	NON_SYNONYMOUS_CODING CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24749626	3R_24749626_SNP [dm3] 3R_28923904_SNP [dm6]	A	T	1.418e^-4	0.667	INTRON CG11828
2L	16213854	2L_16213854_SNP [dm3] 2L_16213854_SNP [dm6]	A	G	1.424e^-4	0.668	DOWNSTREAM CG31819 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24365930	3R_24365930_SNP [dm3] 3R_28540208_SNP [dm6]	T	A	1.430e^-4	0.668	UTR_5_PRIME Ppn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9301042	3L_9301042_SNP [dm3] 3L_9307942_SNP [dm6]	G	T	1.437e^-4	0.668	INTERGENIC
2L	927427	2L_927427_SNP [dm3] 2L_927427_SNP [dm6]	A	G	1.441e^-4	0.668	INTRON CG4341
2R	9203420	2R_9203420_SNP [dm3] 2R_13315915_SNP [dm6]	T	C	1.442e^-4	0.668	INTERGENIC
X	19296955	X_19296955_SNP [dm3] X_19402922_SNP [dm6]	T	G	1.442e^-4	0.668	INTRON kek5
2L	16804548	2L_16804548_SNP [dm3] 2L_16804548_SNP [dm6]	T	A	1.447e^-4	0.669	UPSTREAM CG13272 & 1 other INTRON CG13280
3R	20332286	3R_20332286_SNP [dm3] 3R_24506564_SNP [dm6]	G	A	1.453e^-4	0.67	INTERGENIC
3L	7746091	3L_7746091_SNP [dm3] 3L_7752991_SNP [dm6]	A	C	1.459e^-4	0.671	INTRON CG32373
2L	3513742	2L_3513742_SNP [dm3] 2L_3513742_SNP [dm6]	G	A	1.463e^-4	0.671	SYNONYMOUS_CODING CG33123	TF binding site mE1_TFBS_cad
3L	10004035	3L_10004035_SNP [dm3] 3L_10010935_SNP [dm6]	G	T	1.474e^-4	0.673	INTRON dpr6
X	21986961	X_21986961_SNP [dm3] X_22585125_SNP [dm6]	A	T	1.476e^-4	0.673	INTRON Cda4
3R	17238868	3R_17238868_SNP [dm3] 3R_21413146_SNP [dm6]	A	G	1.482e^-4	0.674	INTRON lbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15899532	3L_15899532_SNP [dm3] 3L_15906432_SNP [dm6]	G	T	1.487e^-4	0.674	INTRON sff
3R	25137178	3R_25137178_SNP [dm3] 3R_29311456_SNP [dm6]	T	C	1.492e^-4	0.674	INTERGENIC
2L	16174245	2L_16174245_SNP [dm3] 2L_16174245_SNP [dm6]	T	C	1.493e^-4	0.674	INTRON Ca-alpha1D
3L	1291110	3L_1291110_SNP [dm3] 3L_1291110_SNP [dm6]	T	C	1.504e^-4	0.674	SYNONYMOUS_CODING CG32333	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3480797	3L_3480797_SNP [dm3] 3L_3480797_SNP [dm6]	T	A	1.509e^-4	0.674	INTRON CG42324
3R	13965363	3R_13965363_INS [dm3] 3R_18139641_INS [dm6]	A	AAGACATA	1.512e^-4	0.674	INTERGENIC
3R	445203	3R_445203_DEL [dm3] 3R_4619481_DEL [dm6]	AA	A	1.520e^-4	0.674	UTR_5_PRIME 5-HT2A INTRON 5-HT2A
X	19163709	X_19163709_SNP [dm3] X_19269676_SNP [dm6]	A	T	1.523e^-4	0.674	UPSTREAM CG8010 INTRON Vav	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
3R	25225260	3R_25225260_DEL [dm3] 3R_29399538_DEL [dm6]	AA	A	1.529e^-4	0.674	INTRON Ptp99A
X	10303787	X_10303787_SNP [dm3] X_10409754_SNP [dm6]	A	C	1.533e^-4	0.674	UTR_3_PRIME flw DOWNSTREAM CG32683
2L	5634611	2L_5634611_SNP [dm3] 2L_5634611_SNP [dm6]	C	T	1.534e^-4	0.674	INTRON CG31646	TF binding site BDTNP1_TFBS_hb
X	9318732	X_9318732_SNP [dm3] X_9424699_SNP [dm6]	G	T	1.535e^-4	0.674	INTRON mgl
2R	9254061	2R_9254061_SNP [dm3] 2R_13366556_SNP [dm6]	C	A	1.539e^-4	0.674	INTERGENIC
3L	11472317	3L_11472317_SNP [dm3] 3L_11479217_SNP [dm6]	G	A	1.540e^-4	0.674	INTERGENIC
3L	6757063	3L_6757063_SNP [dm3] 3L_6763963_SNP [dm6]	A	C	1.540e^-4	0.674	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA
2R	13794746	2R_13794746_SNP [dm3] 2R_17907241_SNP [dm6]	A	T	1.552e^-4	0.674	INTRON Elk
3L	5745418	3L_5745418_SNP [dm3] 3L_5752318_SNP [dm6]	C	A	1.554e^-4	0.674	UPSTREAM Ubp64E & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn
3L	20149764	3L_20149764_SNP [dm3] 3L_20156664_SNP [dm6]	T	C	1.554e^-4	0.674	INTRON CG42674	TF binding site mE1_TFBS_cad
X	7992613	X_7992613_SNP [dm3] X_8098580_SNP [dm6]	A	G	1.563e^-4	0.674	SYNONYMOUS_CODING CG2258	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26878222	3R_26878222_SNP [dm3] 3R_31052500_SNP [dm6]	G	A	1.572e^-4	0.674	UTR_3_PRIME Aph-4 DOWNSTREAM l_3_03670	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	2406865	X_2406865_SNP [dm3] X_2512832_SNP [dm6]	A	G	1.581e^-4	0.674	INTRON trol
3L	7066515	3L_7066515_SNP [dm3] 3L_7073415_SNP [dm6]	T	A	1.581e^-4	0.674	DOWNSTREAM CG34030 INTRON CG8641
2L	16414033	2L_16414033_SNP [dm3] 2L_16414033_SNP [dm6]	A	G	1.582e^-4	0.674	INTRON CG5888	TF binding site BDTNP1_TFBS_twi
2L	16990669	2L_16990669_SNP [dm3] 2L_16990669_SNP [dm6]	A	T	1.582e^-4	0.674	INTRON beat-IIIb
3R	13965365	3R_13965365_SNP [dm3] 3R_18139643_SNP [dm6]	C	T	1.591e^-4	0.674	INTERGENIC
3L	6933240	3L_6933240_SNP [dm3] 3L_6940140_SNP [dm6]	T	C	1.599e^-4	0.674	UPSTREAM CR45412 INTERGENIC
2L	16990724	2L_16990724_SNP [dm3] 2L_16990724_SNP [dm6]	A	C	1.605e^-4	0.674	INTRON beat-IIIb
3L	9987323	3L_9987323_SNP [dm3] 3L_9994223_SNP [dm6]	G	A	1.605e^-4	0.674	INTRON dpr6
2R	6851414	2R_6851414_SNP [dm3] 2R_10963909_SNP [dm6]	A	T	1.607e^-4	0.674	INTERGENIC
3L	586134	3L_586134_SNP [dm3] 3L_586134_SNP [dm6]	C	A	1.616e^-4	0.674	INTRON Kah
3R	13850461	3R_13850461_SNP [dm3] 3R_18024739_SNP [dm6]	C	T	1.617e^-4	0.674	SYNONYMOUS_CODING CG7794	TF binding site mE1_TFBS_cad
3R	17245944	3R_17245944_SNP [dm3] 3R_21420222_SNP [dm6]	T	G	1.618e^-4	0.674	INTRON lbl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10577339	3R_10577339_SNP [dm3] 3R_14751617_SNP [dm6]	C	T	1.625e^-4	0.674	UPSTREAM smp-30 DOWNSTREAM CG7362 INTRON jvl
3L	14139025	3L_14139025_SNP [dm3] 3L_14145925_SNP [dm6]	C	A	1.626e^-4	0.674	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	909041	2L_909041_SNP [dm3] 2L_909041_SNP [dm6]	G	T	1.627e^-4	0.674	INTERGENIC
3L	14566901	3L_14566901_SNP [dm3] 3L_14573801_SNP [dm6]	G	T	1.629e^-4	0.674	INTERGENIC
2L	9519384	2L_9519384_SNP [dm3] 2L_9519384_SNP [dm6]	A	G	1.632e^-4	0.674	INTRON CG33298
2R	8777151	2R_8777151_SNP [dm3] 2R_12889646_SNP [dm6]	T	A	1.639e^-4	0.674	INTRON vg	TF binding site BDTNP1_TFBS_da
2L	18679447	2L_18679447_SNP [dm3] 2L_18679447_SNP [dm6]	T	C	1.641e^-4	0.674	DOWNSTREAM tos INTRON CG31751
3R	460992	3R_460992_SNP [dm3] 3R_4635270_SNP [dm6]	C	T	1.641e^-4	0.674	EXON CR45673	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	766514	3L_766514_SNP [dm3] 3L_766514_SNP [dm6]	C	A	1.647e^-4	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	27035164	3R_27035164_DEL [dm3] 3R_31209442_DEL [dm6]	AAA	A	1.651e^-4	0.674	INTRON chp
3L	7070099	3L_7070099_SNP [dm3] 3L_7076999_SNP [dm6]	T	C	1.652e^-4	0.674	INTRON CG8641
2L	3291080	2L_3291080_SNP [dm3] 2L_3291080_SNP [dm6]	T	C	1.653e^-4	0.674	DOWNSTREAM CG9664 INTERGENIC	TF binding site mE1_TFBS_bab1
3R	14493964	3R_14493964_SNP [dm3] 3R_18668242_SNP [dm6]	A	T	1.656e^-4	0.674	DOWNSTREAM CR45028 & 1 other INTRON CG31229	TF binding site mE1_TFBS_cad
X	8716469	X_8716469_DEL [dm3] X_8822436_DEL [dm6]	AT	A	1.657e^-4	0.674	INTERGENIC
3R	14615206	3R_14615206_SNP [dm3] 3R_18789484_SNP [dm6]	C	T	1.660e^-4	0.674	INTRON CG7720	TF binding site mE1_TFBS_inv
3R	16390075	3R_16390075_SNP [dm3] 3R_20564353_SNP [dm6]	G	T	1.665e^-4	0.674	UPSTREAM CG10877 INTRON CG5191	TF binding site mE1_TFBS_Trl
X	21304959	X_21304959_INS [dm3] X_21433932_INS [dm6]	T	TCAACACACAAAACA...	1.672e^-4	0.674	INTRON CG42343
2R	6865422	2R_6865422_DEL [dm3] 2R_10977917_DEL [dm6]	AA	A	1.675e^-4	0.674	DOWNSTREAM luna INTERGENIC
3R	23382864	3R_23382864_DEL [dm3] 3R_27557142_DEL [dm6]	AGA	A	1.676e^-4	0.674	INTRON Klp98A	TF binding site BDTNP1_TFBS_z
3R	14615003	3R_14615003_SNP [dm3] 3R_18789281_SNP [dm6]	G	A	1.676e^-4	0.674	INTRON CG7720
3R	24131539	3R_24131539_SNP [dm3] 3R_28305817_SNP [dm6]	A	G	1.680e^-4	0.674	INTERGENIC
3R	20330324	3R_20330324_SNP [dm3] 3R_24504602_SNP [dm6]	T	G	1.680e^-4	0.674	INTERGENIC
3R	24749622	3R_24749622_SNP [dm3] 3R_28923900_SNP [dm6]	G	A	1.693e^-4	0.674	INTRON CG11828
2L	9783835	2L_9783835_SNP [dm3] 2L_9783835_SNP [dm6]	T	A	1.694e^-4	0.674	INTRON IP3K1
3L	4355427	3L_4355427_SNP [dm3] 3L_4355427_SNP [dm6]	A	C	1.698e^-4	0.674	INTRON Cip4
2R	4867938	2R_4867938_SNP [dm3] 2R_8980433_SNP [dm6]	C	A	1.702e^-4	0.674	INTRON CG8213
3R	6923529	3R_6923529_SNP [dm3] 3R_11097807_SNP [dm6]	A	C	1.703e^-4	0.674	INTERGENIC
2R	6260680	2R_6260680_SNP [dm3] 2R_10373175_SNP [dm6]	T	C	1.706e^-4	0.674	INTRON CG42732
3R	27035108	3R_27035108_SNP [dm3] 3R_31209386_SNP [dm6]	G	A	1.711e^-4	0.674	INTRON chp
3R	27035131	3R_27035131_SNP [dm3] 3R_31209409_SNP [dm6]	G	A	1.711e^-4	0.674	INTRON chp
3R	17245210	3R_17245210_SNP [dm3] 3R_21419488_SNP [dm6]	G	A	1.722e^-4	0.674	INTRON lbl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	17673707	X_17673707_SNP [dm3] X_17779674_SNP [dm6]	C	T	1.722e^-4	0.674	DOWNSTREAM unc-4 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9255059	2R_9255059_SNP [dm3] 2R_13367554_SNP [dm6]	T	C	1.723e^-4	0.674	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	4994616	3L_4994616_SNP [dm3] 3L_4994616_SNP [dm6]	G	C	1.728e^-4	0.674	SYNONYMOUS_CODING CG32232 INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	19372478	2R_19372478_SNP [dm3] 2R_23484955_SNP [dm6]	A	G	1.732e^-4	0.674	INTRON CG43795
3L	16875872	3L_16875872_SNP [dm3] 3L_16882772_SNP [dm6]	T	A	1.733e^-4	0.674	INTRON Lmpt
2R	9433863	2R_9433863_SNP [dm3] 2R_13546358_SNP [dm6]	C	T	1.738e^-4	0.674	UPSTREAM CG6145 INTRON CG6145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3R	9951635	3R_9951635_SNP [dm3] 3R_14125913_SNP [dm6]	A	G	1.743e^-4	0.674	UTR_5_PRIME RpII140 UPSTREAM 140up	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26879816	3R_26879816_SNP [dm3] 3R_31054094_SNP [dm6]	T	C	1.745e^-4	0.674	UTR_3_PRIME dco UPSTREAM l_3_03670	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2R	12366380	2R_12366380_SNP [dm3] 2R_16478875_SNP [dm6]	C	A	1.745e^-4	0.674	INTERGENIC
2R	17001235	2R_17001235_SNP [dm3] 2R_21113730_SNP [dm6]	T	G	1.746e^-4	0.674	INTRON ktub
3L	10489953	3L_10489953_SNP [dm3] 3L_10496853_SNP [dm6]	A	G	1.752e^-4	0.674	INTRON A2bp1
3R	15216542	3R_15216542_SNP [dm3] 3R_19390820_SNP [dm6]	A	G	1.759e^-4	0.674	SPLICE_SITE_REGION CG18493 SYNONYMOUS_CODING CG18493 DOWNSTREAM CG3734 INTRON Ino80	TF binding site mE1_TFBS_sens
X	19163499	X_19163499_SNP [dm3] X_19269466_SNP [dm6]	T	C	1.762e^-4	0.674	UPSTREAM CG8010 INTRON Vav	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	20408571	3L_20408571_SNP [dm3] 3L_20415471_SNP [dm6]	T	C	1.762e^-4	0.674	INTRON zye
3R	13893854	3R_13893854_SNP [dm3] 3R_18068132_SNP [dm6]	T	C	1.768e^-4	0.674	INTERGENIC
X	5917494	X_5917494_SNP [dm3] X_6023461_SNP [dm6]	A	C	1.770e^-4	0.674	INTERGENIC
X	9497052	X_9497052_SNP [dm3] X_9603019_SNP [dm6]	T	G	1.770e^-4	0.674	SYNONYMOUS_CODING Gga	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	22544778	3R_22544778_SNP [dm3] 3R_26719056_SNP [dm6]	G	A	1.772e^-4	0.674	SYNONYMOUS_CODING CG5484 DOWNSTREAM CG6420	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	9914986	3R_9914986_SNP [dm3] 3R_14089264_SNP [dm6]	G	T	1.778e^-4	0.674	UPSTREAM Npc2b INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA
2L	8326028	2L_8326028_SNP [dm3] 2L_8326028_SNP [dm6]	T	A	1.778e^-4	0.674	UPSTREAM CG7781 INTERGENIC
2R	17993682	2R_17993682_SNP [dm3] 2R_22106177_SNP [dm6]	C	T	1.804e^-4	0.677	UTR_3_PRIME Vrp1 DOWNSTREAM CG6613
3L	20427243	3L_20427243_SNP [dm3] 3L_20434143_SNP [dm6]	G	T	1.807e^-4	0.677	NON_SYNONYMOUS_CODING Psn DOWNSTREAM mRpL15
3L	10005959	3L_10005959_SNP [dm3] 3L_10012859_SNP [dm6]	C	G	1.809e^-4	0.677	INTRON dpr6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17234080	2R_17234080_SNP [dm3] 2R_21346575_SNP [dm6]	A	G	1.814e^-4	0.677	DOWNSTREAM CG15666 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	26879669	3R_26879669_SNP [dm3] 3R_31053947_SNP [dm6]	T	C	1.814e^-4	0.677	UPSTREAM l_3_03670 DOWNSTREAM dco INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2L	5634670	2L_5634670_SNP [dm3] 2L_5634670_SNP [dm6]	A	G	1.818e^-4	0.677	SYNONYMOUS_CODING CG31646	TF binding site BDTNP1_TFBS_hb
3R	17245547	3R_17245547_SNP [dm3] 3R_21419825_SNP [dm6]	C	A	1.825e^-4	0.677	INTRON lbl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	7998847	X_7998847_SNP [dm3] X_8104814_SNP [dm6]	G	C	1.831e^-4	0.677	SYNONYMOUS_CODING Gclc
3R	13834468	3R_13834468_SNP [dm3] 3R_18008746_SNP [dm6]	A	C	1.833e^-4	0.677	INTRON cpo
3R	13893841	3R_13893841_SNP [dm3] 3R_18068119_SNP [dm6]	A	T	1.841e^-4	0.677	INTERGENIC
3R	411721	3R_411721_SNP [dm3] 3R_4585999_SNP [dm6]	A	G	1.850e^-4	0.677	INTRON CR45558	transposable element FlyBase
2L	8539742	2L_8539742_SNP [dm3] 2L_8539742_SNP [dm6]	G	A	1.851e^-4	0.677	INTRON CG17834
3L	767379	3L_767379_SNP [dm3] 3L_767379_SNP [dm6]	A	C	1.852e^-4	0.677	INTERGENIC
3L	9251194	3L_9251194_SNP [dm3] 3L_9258094_SNP [dm6]	T	G	1.853e^-4	0.677	SPLICE_SITE_REGION GluRIB INTRON GluRIB
3R	11469770	3R_11469770_SNP [dm3] 3R_15644048_SNP [dm6]	C	T	1.855e^-4	0.677	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10828007	2L_10828007_SNP [dm3] 2L_10828007_SNP [dm6]	T	G	1.857e^-4	0.677	INTRON Nos
2L	9112677	2L_9112677_SNP [dm3] 2L_9112677_SNP [dm6]	T	C	1.862e^-4	0.677	INTRON Or30a
3R	13958320	3R_13958320_SNP [dm3] 3R_18132598_SNP [dm6]	C	A	1.868e^-4	0.677	SYNONYMOUS_CODING sr UTR_3_PRIME sr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4550185	3L_4550185_DEL [dm3] 3L_4550185_DEL [dm6]	ATGTTAATGTTAAT...	A	1.873e^-4	0.677	UPSTREAM CG11357 INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
X	21306620	X_21306620_SNP [dm3] X_21435593_SNP [dm6]	T	C	1.878e^-4	0.677	SPLICE_SITE_REGION CG42343 INTRON CG42343	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19693372	2R_19693372_SNP [dm3] 2R_23805849_SNP [dm6]	C	G	1.879e^-4	0.677	UTR_3_PRIME CG5539 DOWNSTREAM Ssrp INTRON CG13561	TF binding site mE1_TFBS_chinmo
3L	14226828	3L_14226828_SNP [dm3] 3L_14233728_SNP [dm6]	C	T	1.879e^-4	0.677	SYNONYMOUS_CODING CG7924 DOWNSTREAM nuf	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	13689454	3R_13689454_SNP [dm3] 3R_17863732_SNP [dm6]	T	G	1.880e^-4	0.677	INTRON tinc
3R	21796976	3R_21796976_INS [dm3] 3R_25971254_INS [dm6]	T	TT	1.881e^-4	0.677	INTRON CG42261
2R	11023094	2R_11023094_SNP [dm3] 2R_15135589_SNP [dm6]	G	A	1.892e^-4	0.677	INTRON chn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	24750102	3R_24750102_SNP [dm3] 3R_28924380_SNP [dm6]	C	G	1.896e^-4	0.677	NON_SYNONYMOUS_CODING CG11828 DOWNSTREAM CG14521
3R	25946483	3R_25946483_SNP [dm3] 3R_30120761_SNP [dm6]	T	A	1.900e^-4	0.677	UTR_3_PRIME sima	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	17782703	2L_17782703_SNP [dm3] 2L_17782703_SNP [dm6]	T	C	1.904e^-4	0.677	INTERGENIC
2R	8322148	2R_8322148_SNP [dm3] 2R_12434643_SNP [dm6]	C	A	1.905e^-4	0.677	SYNONYMOUS_CODING DUBAI	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	8322163	2R_8322163_SNP [dm3] 2R_12434658_SNP [dm6]	A	G	1.905e^-4	0.677	SYNONYMOUS_CODING DUBAI	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	17028156	X_17028156_DEL [dm3] X_17134123_DEL [dm6]	GC	A	1.905e^-4	0.677	INTRON CG5004
2R	11789832	2R_11789832_SNP [dm3] 2R_15902327_SNP [dm6]	C	T	1.905e^-4	0.677	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	12534549	X_12534549_DEL [dm3] X_12640516_DEL [dm6]	TTTG	T	1.906e^-4	0.677	INTRON Tomosyn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	7901616	2L_7901616_SNP [dm3] 2L_7901616_SNP [dm6]	A	T	1.915e^-4	0.679	INTRON Snoo
X	7999240	X_7999240_INS [dm3] X_8105207_INS [dm6]	G	TAA	1.933e^-4	0.683	INTRON Gclc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	3846926	3L_3846926_SNP [dm3] 3L_3846926_SNP [dm6]	G	A	1.933e^-4	0.683	INTRON Awh	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
3L	510141	3L_510141_SNP [dm3] 3L_510141_SNP [dm6]	A	T	1.957e^-4	0.688	INTRON klar
2R	19512592	2R_19512592_SNP [dm3] 2R_23625069_SNP [dm6]	T	C	1.958e^-4	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14747470	3R_14747470_DEL [dm3] 3R_18921748_DEL [dm6]	TT	T	1.959e^-4	0.688	INTRON Xrp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
4	360094	4_360094_SNP [dm3] 4_339468_SNP [dm6]	T	C	1.969e^-4	0.69	INTRON PMCA	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3R	17245897	3R_17245897_SNP [dm3] 3R_21420175_SNP [dm6]	T	C	1.977e^-4	0.691	INTRON lbl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7903855	2L_7903855_SNP [dm3] 2L_7903855_SNP [dm6]	A	G	1.984e^-4	0.691	INTRON Snoo
2R	12047025	2R_12047025_SNP [dm3] 2R_16159520_SNP [dm6]	G	C	1.996e^-4	0.691	UPSTREAM CG10734 INTRON lbk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	2091196	3L_2091196_SNP [dm3] 3L_2091196_SNP [dm6]	A	T	1.996e^-4	0.691	INTRON sls	TF binding site mE1_TFBS_HSA
3L	8567251	3L_8567251_DEL [dm3] 3L_8574151_DEL [dm6]	AAC	A	1.998e^-4	0.691	UTR_3_PRIME rhea DOWNSTREAM CG6638
3R	24755406	3R_24755406_SNP [dm3] 3R_28929684_SNP [dm6]	G	C	2.007e^-4	0.691	INTRON CG14521
2R	17001234	2R_17001234_SNP [dm3] 2R_21113729_SNP [dm6]	G	A	2.011e^-4	0.691	INTRON ktub
3L	8792567	3L_8792567_SNP [dm3] 3L_8799467_SNP [dm6]	G	T	2.011e^-4	0.691	SYNONYMOUS_CODING CG13310 DOWNSTREAM Fhos
3R	23774661	3R_23774661_SNP [dm3] 3R_27948939_SNP [dm6]	G	A	2.012e^-4	0.691	UPSTREAM mfrn INTRON Gp93	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3L	5955978	3L_5955978_SNP [dm3] 3L_5962878_SNP [dm6]	C	A	2.019e^-4	0.691	INTERGENIC
3L	9301041	3L_9301041_SNP [dm3] 3L_9307941_SNP [dm6]	G	C	2.019e^-4	0.691	INTERGENIC
2L	17782894	2L_17782894_INS [dm3] 2L_17782894_INS [dm6]	T	TCC	2.022e^-4	0.691	INTERGENIC
X	19162252	X_19162252_DEL [dm3] X_19268219_DEL [dm6]	AC	A	2.024e^-4	0.691	INTRON Vav & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21337147	X_21337147_SNP [dm3] X_21466120_SNP [dm6]	G	C	2.026e^-4	0.691	INTERGENIC
2L	9772737	2L_9772737_SNP [dm3] 2L_9772737_SNP [dm6]	G	A	2.027e^-4	0.691	SYNONYMOUS_CODING ppk16 DOWNSTREAM ppk11
3L	11406610	3L_11406610_INS [dm3] 3L_11413510_INS [dm6]	C	CGAGTC	2.040e^-4	0.694	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	6736275	X_6736275_SNP [dm3] X_6842242_SNP [dm6]	A	T	2.045e^-4	0.694	INTRON CG14435
3R	18129078	3R_18129078_INS [dm3] 3R_22303356_INS [dm6]	A	AA	2.046e^-4	0.694	INTRON CG7084
3R	14494562	3R_14494562_SNP [dm3] 3R_18668840_SNP [dm6]	G	T	2.050e^-4	0.694	UPSTREAM CG7702 INTRON CG31229 EXON CR45028
2L	909059	2L_909059_SNP [dm3] 2L_909059_SNP [dm6]	T	C	2.055e^-4	0.694	INTERGENIC
3R	26986469	3R_26986469_SNP [dm3] 3R_31160747_SNP [dm6]	T	G	2.065e^-4	0.696	INTRON Gycbeta100B & 1 other
3L	15877220	3L_15877220_SNP [dm3] 3L_15884120_SNP [dm6]	T	C	2.068e^-4	0.696	DOWNSTREAM CR44050 INTRON pHCl
2L	7634756	2L_7634756_SNP [dm3] 2L_7634756_SNP [dm6]	C	T	2.070e^-4	0.696	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10819259	3L_10819259_SNP [dm3] 3L_10826159_SNP [dm6]	A	G	2.077e^-4	0.696	DOWNSTREAM CR45246 INTERGENIC
3L	9666031	3L_9666031_SNP [dm3] 3L_9672931_SNP [dm6]	T	C	2.079e^-4	0.696	INTRON fry
3L	15848263	3L_15848263_SNP [dm3] 3L_15855163_SNP [dm6]	A	T	2.084e^-4	0.697	INTRON pHCl
3R	23382904	3R_23382904_SNP [dm3] 3R_27557182_SNP [dm6]	T	G	2.091e^-4	0.698	INTRON Klp98A	TF binding site BDTNP1_TFBS_z
X	9105087	X_9105087_SNP [dm3] X_9211054_SNP [dm6]	A	T	2.118e^-4	0.7	UPSTREAM CG12119 INTERGENIC
3L	4781750	3L_4781750_SNP [dm3] 3L_4781750_SNP [dm6]	A	T	2.119e^-4	0.7	INTRON RhoGEF64C
3R	3784724	3R_3784724_SNP [dm3] 3R_7959002_SNP [dm6]	T	C	2.122e^-4	0.7	INTRON dsx
3R	23382898	3R_23382898_DEL [dm3] 3R_27557176_DEL [dm6]	TGT	T	2.123e^-4	0.7	INTRON Klp98A	TF binding site BDTNP1_TFBS_z
3R	25946516	3R_25946516_INS [dm3] 3R_30120794_INS [dm6]	G	GG	2.123e^-4	0.7	UTR_3_PRIME sima	TF binding site mE1_TFBS_chinmo
3L	14434919	3L_14434919_SNP [dm3] 3L_14441819_SNP [dm6]	A	C	2.129e^-4	0.7	INTRON bbg
3R	4383064	3R_4383064_SNP [dm3] 3R_8557342_SNP [dm6]	T	C	2.133e^-4	0.7	INTERGENIC
2L	8875743	2L_8875743_SNP [dm3] 2L_8875743_SNP [dm6]	G	A	2.137e^-4	0.7	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17668952	X_17668952_SNP [dm3] X_17774919_SNP [dm6]	T	C	2.140e^-4	0.7	INTRON unc-4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13117005	3R_13117005_SNP [dm3] 3R_17291283_SNP [dm6]	A	G	2.149e^-4	0.7	INTERGENIC
3R	24581128	3R_24581128_SNP [dm3] 3R_28755406_SNP [dm6]	T	C	2.149e^-4	0.7	DOWNSTREAM CG9997 INTERGENIC
3R	412933	3R_412933_SNP [dm3] 3R_4587211_SNP [dm6]	C	G	2.150e^-4	0.7	INTRON CR45558	transposable element FlyBase
3R	26829756	3R_26829756_SNP [dm3] 3R_31004034_SNP [dm6]	C	G	2.152e^-4	0.7	INTRON 5-HT7
2R	6383935	2R_6383935_SNP [dm3] 2R_10496430_SNP [dm6]	T	C	2.157e^-4	0.7	UTR_3_PRIME lola INTRON lola
2R	9203495	2R_9203495_SNP [dm3] 2R_13315990_SNP [dm6]	G	A	2.159e^-4	0.7	INTERGENIC
3R	23212165	3R_23212165_SNP [dm3] 3R_27386443_SNP [dm6]	C	G	2.161e^-4	0.7	INTRON side
3R	14493966	3R_14493966_DEL [dm3] 3R_18668244_DEL [dm6]	TACTA	T	2.166e^-4	0.7	DOWNSTREAM CR45028 & 1 other INTRON CG31229	TF binding site mE1_TFBS_cad
2R	19153508	2R_19153508_SNP [dm3] 2R_23265985_SNP [dm6]	T	A	2.174e^-4	0.7	UPSTREAM CG12782 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	19209195	3R_19209195_SNP [dm3] 3R_23383473_SNP [dm6]	A	G	2.174e^-4	0.7	UPSTREAM CG4393 INTRON CG4393
3L	14936435	3L_14936435_SNP [dm3] 3L_14943335_SNP [dm6]	A	G	2.175e^-4	0.7	DOWNSTREAM DCX-EMAP & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	9105052	X_9105052_SNP [dm3] X_9211019_SNP [dm6]	A	T	2.178e^-4	0.7	UPSTREAM CG12119 INTERGENIC
2R	17636334	2R_17636334_SNP [dm3] 2R_21748829_SNP [dm6]	T	A	2.179e^-4	0.7	INTERGENIC
2L	6407920	2L_6407920_SNP [dm3] 2L_6407920_SNP [dm6]	T	A	2.186e^-4	0.701	INTRON CG42368
3L	7281131	3L_7281131_SNP [dm3] 3L_7288031_SNP [dm6]	A	G	2.204e^-4	0.702	INTRON unc-13-4A
2L	10782017	2L_10782017_SNP [dm3] 2L_10782017_SNP [dm6]	C	T	2.205e^-4	0.702	INTRON CG31869
2L	4713067	2L_4713067_SNP [dm3] 2L_4713067_SNP [dm6]	C	G	2.210e^-4	0.702	INTRON CG34351
X	11766641	X_11766641_SNP [dm3] X_11872608_SNP [dm6]	G	T	2.212e^-4	0.702	UTR_5_PRIME CG11802 UPSTREAM CG15739	TF binding site mE1_TFBS_cad
3L	2687444	3L_2687444_SNP [dm3] 3L_2687444_SNP [dm6]	T	C	2.214e^-4	0.702	INTRON Fife
2R	14415598	2R_14415598_SNP [dm3] 2R_18528093_SNP [dm6]	A	G	2.223e^-4	0.702	INTRON CG10924	TF binding site mE1_TFBS_Trl
3R	19362354	3R_19362354_SNP [dm3] 3R_23536632_SNP [dm6]	G	C	2.224e^-4	0.702	NON_SYNONYMOUS_CODING CG16732 DOWNSTREAM CG10168
3L	4309368	3L_4309368_SNP [dm3] 3L_4309368_SNP [dm6]	G	C	2.228e^-4	0.702	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15715850	3R_15715850_SNP [dm3] 3R_19890128_SNP [dm6]	A	G	2.229e^-4	0.702	UPSTREAM CG4733 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	10292474	X_10292474_SNP [dm3] X_10398441_SNP [dm6]	T	A	2.232e^-4	0.702	INTRON flw
2L	12628258	2L_12628258_SNP [dm3] 2L_12628258_SNP [dm6]	A	G	2.232e^-4	0.702	DOWNSTREAM nub INTRON Ref2
3L	1448497	3L_1448497_SNP [dm3] 3L_1448497_SNP [dm6]	G	T	2.253e^-4	0.707	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	11469768	3R_11469768_SNP [dm3] 3R_15644046_SNP [dm6]	A	T	2.254e^-4	0.707	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7997116	X_7997116_SNP [dm3] X_8103083_SNP [dm6]	C	T	2.266e^-4	0.708	UTR_3_PRIME Gclc UPSTREAM CG2258
3L	12931633	3L_12931633_SNP [dm3] 3L_12938533_SNP [dm6]	C	T	2.268e^-4	0.708	INTERGENIC
2L	22196961	2L_22196961_SNP [dm3] 2L_22196961_SNP [dm6]	T	G	2.272e^-4	0.708	INTRON Ir40a
3R	11827769	3R_11827769_SNP [dm3] 3R_16002047_SNP [dm6]	A	G	2.279e^-4	0.708	INTRON srp	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	5483287	3L_5483287_SNP [dm3] 3L_5490187_SNP [dm6]	T	G	2.282e^-4	0.708	INTERGENIC
3R	26878326	3R_26878326_SNP [dm3] 3R_31052604_SNP [dm6]	G	C	2.293e^-4	0.708	DOWNSTREAM l_3_03670 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	26799106	3R_26799106_SNP [dm3] 3R_30973384_SNP [dm6]	A	T	2.293e^-4	0.708	INTRON 5-HT7
2L	3502391	2L_3502391_SNP [dm3] 2L_3502391_SNP [dm6]	A	G	2.298e^-4	0.708	INTRON tim
X	7996080	X_7996080_SNP [dm3] X_8102047_SNP [dm6]	T	C	2.303e^-4	0.708	START_GAINED CG2258 UTR_5_PRIME CG2258 UPSTREAM CG2258 DOWNSTREAM Gclc
2R	6873079	2R_6873079_SNP [dm3] 2R_10985574_SNP [dm6]	C	T	2.310e^-4	0.708	INTRON luna
3R	14108033	3R_14108033_SNP [dm3] 3R_18282311_SNP [dm6]	T	G	2.312e^-4	0.708	UTR_3_PRIME eIF-1A DOWNSTREAM CG14312
3R	16596148	3R_16596148_SNP [dm3] 3R_20770426_SNP [dm6]	G	T	2.318e^-4	0.708	DOWNSTREAM Takl1 INTRON Syp	TF binding site mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA
X	7214517	X_7214517_SNP [dm3] X_7320484_SNP [dm6]	T	G	2.321e^-4	0.708	INTRON CR44357 & 2 others	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	4631737	X_4631737_SNP [dm3] X_4737704_SNP [dm6]	T	C	2.327e^-4	0.708	INTERGENIC
3L	10489954	3L_10489954_SNP [dm3] 3L_10496854_SNP [dm6]	C	A	2.341e^-4	0.708	INTRON A2bp1
3R	11228328	3R_11228328_SNP [dm3] 3R_15402606_SNP [dm6]	G	C	2.345e^-4	0.708	UTR_3_PRIME CG6125 DOWNSTREAM CG6125 & 1 other
2R	19153875	2R_19153875_SNP [dm3] 2R_23266352_SNP [dm6]	T	A	2.356e^-4	0.708	UPSTREAM CG12782 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	4744863	2L_4744863_SNP [dm3] 2L_4744863_SNP [dm6]	C	T	2.361e^-4	0.708	INTRON CG15630
3L	4994618	3L_4994618_SNP [dm3] 3L_4994618_SNP [dm6]	G	A	2.362e^-4	0.708	NON_SYNONYMOUS_CODING CG32232 INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	10536562	3L_10536562_SNP [dm3] 3L_10543462_SNP [dm6]	T	G	2.378e^-4	0.708	INTRON A2bp1
2R	8496972	2R_8496972_SNP [dm3] 2R_12609467_SNP [dm6]	G	T	2.379e^-4	0.708	SYNONYMOUS_CODING Amph INTRON Amph
3R	14840843	3R_14840843_SNP [dm3] 3R_19015121_SNP [dm6]	T	C	2.381e^-4	0.708	INTRON gukh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	9683940	3R_9683940_SNP [dm3] 3R_13858218_SNP [dm6]	T	G	2.386e^-4	0.708	INTERGENIC
2L	16835116	2L_16835116_SNP [dm3] 2L_16835116_SNP [dm6]	T	A	2.395e^-4	0.708	UPSTREAM CG13282 DOWNSTREAM CG13283 INTERGENIC
2L	7898839	2L_7898839_SNP [dm3] 2L_7898839_SNP [dm6]	C	A	2.397e^-4	0.708	INTRON Snoo	TF binding site mE1_TFBS_cad
3R	26878150	3R_26878150_SNP [dm3] 3R_31052428_SNP [dm6]	A	T	2.397e^-4	0.708	UTR_3_PRIME Aph-4 DOWNSTREAM l_3_03670	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	5365605	3L_5365605_SNP [dm3] 3L_5372505_SNP [dm6]	G	T	2.400e^-4	0.708	UPSTREAM CR44516 INTERGENIC
3L	7874282	3L_7874282_SNP [dm3] 3L_7881182_SNP [dm6]	T	A	2.402e^-4	0.708	INTRON CG32365
2R	10803034	2R_10803034_SNP [dm3] 2R_14915529_SNP [dm6]	A	T	2.405e^-4	0.708	INTRON CG10249
3R	26819567	3R_26819567_SNP [dm3] 3R_30993845_SNP [dm6]	G	A	2.408e^-4	0.708	INTRON 5-HT7
2R	5079908	2R_5079908_SNP [dm3] 2R_9192403_SNP [dm6]	C	A	2.409e^-4	0.708	UPSTREAM CG8026 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn
X	20241832	X_20241832_DEL [dm3] X_20370805_DEL [dm6]	CACC	GG	2.413e^-4	0.708	INTERGENIC
3L	11333288	3L_11333288_SNP [dm3] 3L_11340188_SNP [dm6]	T	C	2.415e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9815937	3L_9815937_SNP [dm3] 3L_9822837_SNP [dm6]	C	G	2.416e^-4	0.708	DOWNSTREAM Ilp5 INTRON CG43897
2R	20185274	2R_20185274_SNP [dm3] 2R_24297751_SNP [dm6]	T	C	2.417e^-4	0.708	SYNONYMOUS_CODING CG3394	TF binding site mE1_TFBS_chinmo
2R	17374504	2R_17374504_SNP [dm3] 2R_21486999_SNP [dm6]	C	A	2.426e^-4	0.708	UTR_3_PRIME Sara DOWNSTREAM Fkbp14
3R	26935902	3R_26935902_SNP [dm3] 3R_31110180_SNP [dm6]	A	T	2.428e^-4	0.708	UPSTREAM CG11318 INTERGENIC
X	9497121	X_9497121_SNP [dm3] X_9603088_SNP [dm6]	G	C	2.430e^-4	0.708	NON_SYNONYMOUS_CODING Gga	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10005963	3L_10005963_SNP [dm3] 3L_10012863_SNP [dm6]	G	A	2.430e^-4	0.708	INTRON dpr6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1901306	3L_1901306_SNP [dm3] 3L_1901306_SNP [dm6]	T	C	2.436e^-4	0.708	UTR_3_PRIME CG1887 INTRON CG1887	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA
X	18382068	X_18382068_SNP [dm3] X_18488035_SNP [dm6]	C	G	2.438e^-4	0.708	INTRON CG15046	TF binding site mE1_TFBS_chinmo
3L	8570439	3L_8570439_SNP [dm3] 3L_8577339_SNP [dm6]	A	G	2.447e^-4	0.708	UTR_5_PRIME CG43078	TF binding site mE1_TFBS_HSA
3L	6757233	3L_6757233_SNP [dm3] 3L_6764133_SNP [dm6]	A	G	2.449e^-4	0.708	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	18867827	X_18867827_SNP [dm3] X_18973794_SNP [dm6]	C	T	2.459e^-4	0.708	INTRON CG43759
3R	14369032	3R_14369032_SNP [dm3] 3R_18543310_SNP [dm6]	C	T	2.462e^-4	0.708	INTRON fru
3L	7071286	3L_7071286_SNP [dm3] 3L_7078186_SNP [dm6]	T	G	2.462e^-4	0.708	UPSTREAM CG8641 INTERGENIC
X	7994787	X_7994787_SNP [dm3] X_8100754_SNP [dm6]	T	A	2.463e^-4	0.708	UPSTREAM CG2258 INTRON CG2258	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
X	19747548	X_19747548_SNP [dm3] X_19853515_SNP [dm6]	G	A	2.464e^-4	0.708	SYNONYMOUS_CODING Nup205	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_sens
2L	14176734	2L_14176734_SNP [dm3] 2L_14176734_SNP [dm6]	A	T	2.469e^-4	0.708	INTRON CG43333
3R	26880845	3R_26880845_SNP [dm3] 3R_31055123_SNP [dm6]	A	T	2.475e^-4	0.708	UTR_3_PRIME dco DOWNSTREAM dco
2R	2003775	2R_2003775_SNP [dm3] 2R_6116270_SNP [dm6]	G	T	2.476e^-4	0.708	INTRON EcR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17828354	2R_17828354_SNP [dm3] 2R_21940849_SNP [dm6]	T	C	2.477e^-4	0.708	INTRON Fili
2L	3565000	2L_3565000_DEL [dm3] 2L_3565000_DEL [dm6]	TTTTGCAAACGCT...	T	2.478e^-4	0.708	INTERGENIC
2R	15562174	2R_15562174_SNP [dm3] 2R_19674669_SNP [dm6]	T	C	2.479e^-4	0.708	INTERGENIC
3L	412348	3L_412348_SNP [dm3] 3L_412348_SNP [dm6]	T	C	2.479e^-4	0.708	INTERGENIC
X	18802527	X_18802527_SNP [dm3] X_18908494_SNP [dm6]	A	G	2.481e^-4	0.708	INTRON CG7378
2R	16971053	2R_16971053_SNP [dm3] 2R_21083548_SNP [dm6]	A	G	2.491e^-4	0.708	UPSTREAM Treh INTRON Treh
2L	18455809	2L_18455809_SNP [dm3] 2L_18455809_SNP [dm6]	C	T	2.491e^-4	0.708	DOWNSTREAM Ntf-2r EXON let-7-C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14368919	3R_14368919_SNP [dm3] 3R_18543197_SNP [dm6]	A	C	2.496e^-4	0.708	INTRON fru
X	7975155	X_7975155_SNP [dm3] X_8081122_SNP [dm6]	A	G	2.497e^-4	0.708	INTRON CG2254	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5545664	2L_5545664_SNP [dm3] 2L_5545664_SNP [dm6]	A	G	2.503e^-4	0.708	UTR_3_PRIME Lam	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad
2L	7898751	2L_7898751_SNP [dm3] 2L_7898751_SNP [dm6]	G	A	2.517e^-4	0.708	INTRON Snoo	TF binding site mE1_TFBS_cad
2L	7898754	2L_7898754_SNP [dm3] 2L_7898754_SNP [dm6]	A	T	2.517e^-4	0.708	INTRON Snoo	TF binding site mE1_TFBS_cad
X	13007111	X_13007111_SNP [dm3] X_13113078_SNP [dm6]	T	C	2.527e^-4	0.708	UPSTREAM CG43313 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
3R	25250777	3R_25250777_SNP [dm3] 3R_29425055_SNP [dm6]	C	G	2.528e^-4	0.708	INTRON Ptp99A
3R	17244846	3R_17244846_SNP [dm3] 3R_21419124_SNP [dm6]	A	G	2.530e^-4	0.708	INTRON lbl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	12577126	2R_12577126_SNP [dm3] 2R_16689621_SNP [dm6]	A	G	2.532e^-4	0.708	INTRON CG30463
3L	5650537	3L_5650537_SNP [dm3] 3L_5657437_SNP [dm6]	A	G	2.535e^-4	0.708	UPSTREAM sif DOWNSTREAM lin-28 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	13964575	3R_13964575_SNP [dm3] 3R_18138853_SNP [dm6]	A	T	2.536e^-4	0.708	INTERGENIC
3R	7121987	3R_7121987_INS [dm3] 3R_11296265_INS [dm6]	G	GG	2.537e^-4	0.708	INTRON CR31386	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	9497112	X_9497112_SNP [dm3] X_9603079_SNP [dm6]	G	A	2.538e^-4	0.708	SYNONYMOUS_CODING Gga	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	15868591	3L_15868591_SNP [dm3] 3L_15875491_SNP [dm6]	C	T	2.541e^-4	0.708	DOWNSTREAM CR44051 INTRON pHCl
X	15659530	X_15659530_SNP [dm3] X_15765497_SNP [dm6]	C	A	2.543e^-4	0.708	UTR_3_PRIME CG8952 INTRON CG17209
2R	8517281	2R_8517281_SNP [dm3] 2R_12629776_SNP [dm6]	C	T	2.547e^-4	0.708	SYNONYMOUS_CODING muskelin
2R	9080496	2R_9080496_SNP [dm3] 2R_13192991_SNP [dm6]	C	A	2.547e^-4	0.708	INTRON Kdm4B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
X	18931238	X_18931238_SNP [dm3] X_19037205_SNP [dm6]	C	A	2.548e^-4	0.708	INTERGENIC
2L	938585	2L_938585_SNP [dm3] 2L_938585_SNP [dm6]	A	G	2.549e^-4	0.708	INTRON CG4341
X	2810402	X_2810402_SNP [dm3] X_2916369_SNP [dm6]	C	G	2.555e^-4	0.708	INTRON kirre
2L	11000979	2L_11000979_SNP [dm3] 2L_11000979_SNP [dm6]	A	T	2.563e^-4	0.708	UTR_5_PRIME aub INTRON aub
3R	13689444	3R_13689444_SNP [dm3] 3R_17863722_SNP [dm6]	T	G	2.567e^-4	0.708	INTRON tinc
3R	24365911	3R_24365911_SNP [dm3] 3R_28540189_SNP [dm6]	T	G	2.567e^-4	0.708	UTR_5_PRIME Ppn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9254283	2R_9254283_INS [dm3] 2R_13366778_INS [dm6]	A	AA	2.567e^-4	0.708	INTERGENIC
2R	5090635	2R_5090635_SNP [dm3] 2R_9203130_SNP [dm6]	G	C	2.587e^-4	0.708	INTERGENIC
3L	1996691	3L_1996691_SNP [dm3] 3L_1996691_SNP [dm6]	G	C	2.593e^-4	0.708	INTERGENIC
X	7993649	X_7993649_SNP [dm3] X_8099616_SNP [dm6]	G	T	2.594e^-4	0.708	SPLICE_SITE_REGION CG2258 UTR_5_PRIME CG2258	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_Trl
3L	13163111	3L_13163111_SNP [dm3] 3L_13170011_SNP [dm6]	A	T	2.596e^-4	0.708	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
X	12614883	X_12614883_SNP [dm3] X_12720850_SNP [dm6]	A	T	2.597e^-4	0.708	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	1787857	3R_1787857_INS [dm3] 3R_5962135_INS [dm6]	G	GC	2.597e^-4	0.708	INTERGENIC
2L	8777283	2L_8777283_SNP [dm3] 2L_8777283_SNP [dm6]	A	G	2.601e^-4	0.708	DOWNSTREAM CG9468 INTERGENIC
2R	9203456	2R_9203456_INS [dm3] 2R_13315951_INS [dm6]	C	CC	2.612e^-4	0.708	INTERGENIC
X	17024989	X_17024989_SNP [dm3] X_17130956_SNP [dm6]	T	C	2.614e^-4	0.708	SPLICE_SITE_REGION CG5004 INTRON CG5004
3R	18128626	3R_18128626_SNP [dm3] 3R_22302904_SNP [dm6]	G	C	2.623e^-4	0.708	SYNONYMOUS_CODING CG7084	TF binding site mE1_TFBS_chinmo
2L	7005868	2L_7005868_SNP [dm3] 2L_7005868_SNP [dm6]	C	T	2.624e^-4	0.708	INTRON uif	TF binding site BDTNP1_TFBS_hb
3R	13559441	3R_13559441_SNP [dm3] 3R_17733719_SNP [dm6]	A	C	2.629e^-4	0.708	NON_SYNONYMOUS_CODING CG14321 DOWNSTREAM Lgr1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	16008596	3R_16008596_SNP [dm3] 3R_20182874_SNP [dm6]	C	A	2.631e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	12959270	2R_12959270_SNP [dm3] 2R_17071765_SNP [dm6]	C	T	2.631e^-4	0.708	SYNONYMOUS_CODING CG30460	TF binding site mE1_TFBS_cad
3R	18504073	3R_18504073_SNP [dm3] 3R_22678351_SNP [dm6]	G	A	2.640e^-4	0.708	INTRON CG45058	TF binding site mE1_TFBS_cad
3R	11456114	3R_11456114_SNP [dm3] 3R_15630392_SNP [dm6]	T	G	2.642e^-4	0.708	INTERGENIC
X	11756394	X_11756394_SNP [dm3] X_11862361_SNP [dm6]	T	C	2.649e^-4	0.708	SYNONYMOUS_CODING ATP7	TF binding site mE1_TFBS_chinmo
3R	26783842	3R_26783842_SNP [dm3] 3R_30958120_SNP [dm6]	C	A	2.654e^-4	0.708	INTERGENIC
2L	11187186	2L_11187186_SNP [dm3] 2L_11187186_SNP [dm6]	T	A	2.656e^-4	0.708	INTRON Ca-beta
2L	16213458	2L_16213458_SNP [dm3] 2L_16213458_SNP [dm6]	G	A	2.657e^-4	0.708	DOWNSTREAM CG31819 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8561801	3L_8561801_SNP [dm3] 3L_8568701_SNP [dm6]	A	G	2.658e^-4	0.708	SYNONYMOUS_CODING rhea UTR_3_PRIME rhea UPSTREAM CR43910	TF binding site mE1_TFBS_cad
X	15659534	X_15659534_SNP [dm3] X_15765501_SNP [dm6]	T	C	2.659e^-4	0.708	UTR_3_PRIME CG8952 INTRON CG17209
3R	26855696	3R_26855696_SNP [dm3] 3R_31029974_SNP [dm6]	A	T	2.661e^-4	0.708	INTERGENIC
3L	14434996	3L_14434996_SNP [dm3] 3L_14441896_SNP [dm6]	T	A	2.661e^-4	0.708	INTRON bbg
2L	11145540	2L_11145540_SNP [dm3] 2L_11145540_SNP [dm6]	C	T	2.662e^-4	0.708	UPSTREAM CG31867 INTRON Gyc32E
3L	14156761	3L_14156761_SNP [dm3] 3L_14163661_SNP [dm6]	T	C	2.666e^-4	0.708	INTERGENIC	regulatory region REDfly_CRMs
2R	13650103	2R_13650103_SNP [dm3] 2R_17762598_SNP [dm6]	T	A	2.667e^-4	0.708	SYNONYMOUS_CODING CG5009
3R	5126609	3R_5126609_SNP [dm3] 3R_9300887_SNP [dm6]	T	C	2.674e^-4	0.708	INTRON CG8861
3L	767727	3L_767727_SNP [dm3] 3L_767727_SNP [dm6]	C	T	2.684e^-4	0.709	INTERGENIC
3R	19479621	3R_19479621_SNP [dm3] 3R_23653899_SNP [dm6]	T	A	2.699e^-4	0.709	INTRON CG31145
2R	19546698	2R_19546698_SNP [dm3] 2R_23659175_SNP [dm6]	C	T	2.699e^-4	0.709	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	6700382	2L_6700382_SNP [dm3] 2L_6700382_SNP [dm6]	G	A	2.701e^-4	0.709	SYNONYMOUS_CODING Tsp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	13142381	2R_13142381_SNP [dm3] 2R_17254876_SNP [dm6]	G	T	2.706e^-4	0.709	UPSTREAM CG43272 INTRON mbl & 1 other
3L	4758516	3L_4758516_SNP [dm3] 3L_4758516_SNP [dm6]	A	G	2.714e^-4	0.709	UTR_3_PRIME CG13711 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	421156	3R_421156_SNP [dm3] 3R_4595434_SNP [dm6]	T	G	2.716e^-4	0.709	DOWNSTREAM CR44317 INTERGENIC
3L	12123259	3L_12123259_SNP [dm3] 3L_12130159_SNP [dm6]	T	G	2.720e^-4	0.709	SYNONYMOUS_CODING Lsp2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	16758545	3R_16758545_SNP [dm3] 3R_20932823_SNP [dm6]	A	G	2.731e^-4	0.709	INTRON CG31191
3R	3111455	3R_3111455_INS [dm3] 3R_7285733_INS [dm6]	A	AA	2.733e^-4	0.709	UPSTREAM RacGAP84C & 1 other INTRON rn
3L	6948719	3L_6948719_SNP [dm3] 3L_6955619_SNP [dm6]	G	T	2.735e^-4	0.709	UPSTREAM CG9948 & 1 other INTRON CG10077	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	18580972	3R_18580972_SNP [dm3] 3R_22755250_SNP [dm6]	A	G	2.736e^-4	0.709	UTR_5_PRIME CG7029 INTRON Usp12-46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	6409961	2R_6409961_SNP [dm3] 2R_10522456_SNP [dm6]	G	A	2.738e^-4	0.709	NON_SYNONYMOUS_CODING lola INTRON lola	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19372467	2R_19372467_SNP [dm3] 2R_23484944_SNP [dm6]	G	A	2.739e^-4	0.709	INTRON CG43795
3L	9340702	3L_9340702_SNP [dm3] 3L_9347602_SNP [dm6]	T	A	2.750e^-4	0.709	DOWNSTREAM PGRP-LC INTRON PGRP-LC
3R	26878322	3R_26878322_SNP [dm3] 3R_31052600_SNP [dm6]	C	A	2.752e^-4	0.709	DOWNSTREAM l_3_03670 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	6019315	X_6019315_SNP [dm3] X_6125282_SNP [dm6]	G	T	2.757e^-4	0.709	INTRON Ca-alpha1T
3L	1312969	3L_1312969_SNP [dm3] 3L_1312969_SNP [dm6]	T	G	2.757e^-4	0.709	UTR_5_PRIME CG9186 UPSTREAM CG9153	TF binding site mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Ubx
2L	3851762	2L_3851762_SNP [dm3] 2L_3851762_SNP [dm6]	C	T	2.760e^-4	0.709	UPSTREAM CR45451 INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	12364930	2R_12364930_SNP [dm3] 2R_16477425_SNP [dm6]	T	C	2.764e^-4	0.709	INTERGENIC
3L	3268986	3L_3268986_DEL [dm3] 3L_3268986_DEL [dm6]	ACTGTGAACAAATTTA...	A	2.766e^-4	0.709	UTR_3_PRIME CG34265 DOWNSTREAM ckd & 1 other INTRAGENIC CG34265 INTERGENIC
3R	294145	3R_294145_SNP [dm3] 3R_4468423_SNP [dm6]	C	T	2.767e^-4	0.709	INTRON CG31523	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2R	18060045	2R_18060045_SNP [dm3] 2R_22172540_SNP [dm6]	C	A	2.767e^-4	0.709	UTR_3_PRIME a DOWNSTREAM CG3045
2L	976700	2L_976700_SNP [dm3] 2L_976700_SNP [dm6]	G	A	2.776e^-4	0.709	INTERGENIC
3L	791464	3L_791464_SNP [dm3] 3L_791464_SNP [dm6]	A	C	2.789e^-4	0.709	INTERGENIC
2L	7898870	2L_7898870_SNP [dm3] 2L_7898870_SNP [dm6]	C	G	2.797e^-4	0.709	INTRON Snoo	TF binding site mE1_TFBS_cad
2R	12555135	2R_12555135_SNP [dm3] 2R_16667630_SNP [dm6]	G	C	2.803e^-4	0.709	UTR_5_PRIME Picot	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7638620	2R_7638620_SNP [dm3] 2R_11751115_SNP [dm6]	A	T	2.804e^-4	0.709	INTERGENIC
2R	6002623	2R_6002623_SNP [dm3] 2R_10115118_SNP [dm6]	C	A	2.804e^-4	0.709	INTRON Pfk
2L	3287165	2L_3287165_SNP [dm3] 2L_3287165_SNP [dm6]	A	C	2.806e^-4	0.709	UPSTREAM CR44485 INTERGENIC
3L	7851370	3L_7851370_SNP [dm3] 3L_7858270_SNP [dm6]	G	A	2.807e^-4	0.709	INTRON Pdp1	TF binding site mE1_TFBS_HSA
3R	16388295	3R_16388295_SNP [dm3] 3R_20562573_SNP [dm6]	C	T	2.816e^-4	0.709	UTR_3_PRIME CG10877 INTRON CG5191	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	23087691	3R_23087691_INS [dm3] 3R_27261969_INS [dm6]	A	AGTTAGTATATA...	2.837e^-4	0.709	DOWNSTREAM CR44049 INTRON woc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	5421555	2R_5421555_SNP [dm3] 2R_9534050_SNP [dm6]	C	T	2.841e^-4	0.709	SYNONYMOUS_CODING brp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14170753	2R_14170753_SNP [dm3] 2R_18283248_SNP [dm6]	A	C	2.842e^-4	0.709	SPLICE_SITE_REGION sbb INTRON sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10050272	2L_10050272_SNP [dm3] 2L_10050272_SNP [dm6]	C	A	2.843e^-4	0.709	NON_SYNONYMOUS_CODING CG33301	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8638433	3L_8638433_SNP [dm3] 3L_8645333_SNP [dm6]	T	G	2.844e^-4	0.709	INTRON CG13305
2L	3701391	2L_3701391_SNP [dm3] 2L_3701391_SNP [dm6]	C	A	2.845e^-4	0.709	UPSTREAM CG43145 DOWNSTREAM CG42465 & 1 other INTRON CG42467
3L	6757359	3L_6757359_SNP [dm3] 3L_6764259_SNP [dm6]	T	A	2.848e^-4	0.709	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	12522462	3L_12522462_SNP [dm3] 3L_12529362_SNP [dm6]	T	C	2.850e^-4	0.709	INTRON nst	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11524170	2R_11524170_SNP [dm3] 2R_15636665_SNP [dm6]	G	C	2.854e^-4	0.709	INTRON CG42524
3R	20333650	3R_20333650_SNP [dm3] 3R_24507928_SNP [dm6]	G	A	2.859e^-4	0.709	INTERGENIC
3R	15224719	3R_15224719_SNP [dm3] 3R_19398997_SNP [dm6]	C	T	2.859e^-4	0.709	SYNONYMOUS_CODING Ino80 UPSTREAM CG31244
3L	10535797	3L_10535797_SNP [dm3] 3L_10542697_SNP [dm6]	A	G	2.860e^-4	0.709	INTRON A2bp1
3L	16232541	3L_16232541_SNP [dm3] 3L_16239441_SNP [dm6]	A	T	2.862e^-4	0.709	UTR_3_PRIME l_3_72Dr	TF binding site mE1_TFBS_cad
2R	13116058	2R_13116058_SNP [dm3] 2R_17228553_SNP [dm6]	A	C	2.869e^-4	0.709	INTRON mbl
2R	17671195	2R_17671195_SNP [dm3] 2R_21783690_SNP [dm6]	T	A	2.871e^-4	0.709	INTERGENIC
2R	17671196	2R_17671196_SNP [dm3] 2R_21783691_SNP [dm6]	T	A	2.871e^-4	0.709	INTERGENIC
3R	13464746	3R_13464746_SNP [dm3] 3R_17639024_SNP [dm6]	A	G	2.879e^-4	0.709	SPLICE_SITE_REGION CR45222 INTRON CG43175 & 1 other
2R	14085976	2R_14085976_DEL [dm3] 2R_18198471_DEL [dm6]	CTAC	C	2.887e^-4	0.709	INTERGENIC
3R	18192556	3R_18192556_SNP [dm3] 3R_22366834_SNP [dm6]	G	A	2.891e^-4	0.709	SYNONYMOUS_CODING CG5380 UPSTREAM CG5382 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	14494279	3R_14494279_SNP [dm3] 3R_18668557_SNP [dm6]	T	C	2.907e^-4	0.709	UPSTREAM CG7702 DOWNSTREAM CR45028 & 1 other INTRON CG31229
3L	7120820	3L_7120820_SNP [dm3] 3L_7127720_SNP [dm6]	A	G	2.911e^-4	0.709	SYNONYMOUS_CODING BBS1 DOWNSTREAM CG8629	TF binding site mE1_TFBS_chinmo
2L	3265159	2L_3265159_SNP [dm3] 2L_3265159_SNP [dm6]	C	T	2.914e^-4	0.709	EXON CR45706
2L	11187139	2L_11187139_SNP [dm3] 2L_11187139_SNP [dm6]	T	G	2.916e^-4	0.709	INTRON Ca-beta
X	13872709	X_13872709_SNP [dm3] X_13978676_SNP [dm6]	G	A	2.918e^-4	0.709	INTRON mamo
3R	18129037	3R_18129037_SNP [dm3] 3R_22303315_SNP [dm6]	A	G	2.930e^-4	0.709	INTRON CG7084
3R	24570225	3R_24570225_SNP [dm3] 3R_28744503_SNP [dm6]	G	T	2.931e^-4	0.709	UTR_5_PRIME AstA-R2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26783616	3R_26783616_SNP [dm3] 3R_30957894_SNP [dm6]	T	C	2.932e^-4	0.709	INTERGENIC
3R	13849867	3R_13849867_SNP [dm3] 3R_18024145_SNP [dm6]	C	T	2.932e^-4	0.709	SYNONYMOUS_CODING CG7794 DOWNSTREAM CG7785	TF binding site mE1_TFBS_cad
3R	24749813	3R_24749813_SNP [dm3] 3R_28924091_SNP [dm6]	T	A	2.932e^-4	0.709	NON_SYNONYMOUS_CODING CG11828 DOWNSTREAM CG14521
3L	12433366	3L_12433366_SNP [dm3] 3L_12440266_SNP [dm6]	T	A	2.933e^-4	0.709	INTERGENIC
2R	10306531	2R_10306531_DEL [dm3] 2R_14419026_DEL [dm6]	TCTAATTT	T	2.934e^-4	0.709	INTERGENIC
3L	650946	3L_650946_SNP [dm3] 3L_650946_SNP [dm6]	T	C	2.936e^-4	0.709	SYNONYMOUS_CODING Gale DOWNSTREAM CG3402	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12343717	2R_12343717_INS [dm3] 2R_16456212_INS [dm6]	T	TTTCTATGTCCGT...	2.945e^-4	0.709	INTERGENIC
2R	15438833	2R_15438833_INS [dm3] 2R_19551328_INS [dm6]	T	TT	2.947e^-4	0.709	UPSTREAM CG43111 INTRON sm
3L	19074153	3L_19074153_SNP [dm3] 3L_19081053_SNP [dm6]	T	C	2.956e^-4	0.709	INTRON Mkp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	14385295	X_14385295_SNP [dm3] X_14491262_SNP [dm6]	T	C	2.958e^-4	0.709	INTERGENIC
2L	7488572	2L_7488572_SNP [dm3] 2L_7488572_SNP [dm6]	T	A	2.961e^-4	0.709	INTRON Ziz
3R	24426330	3R_24426330_SNP [dm3] 3R_28600608_SNP [dm6]	G	A	2.963e^-4	0.709	UPSTREAM snoRNA:Psi28S-3405a INTRON Hrb98DE	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	18802519	X_18802519_SNP [dm3] X_18908486_SNP [dm6]	C	T	2.964e^-4	0.709	INTRON CG7378
3R	21817338	3R_21817338_SNP [dm3] 3R_25991616_SNP [dm6]	C	T	2.965e^-4	0.709	SYNONYMOUS_CODING Nf1
3L	9228780	3L_9228780_SNP [dm3] 3L_9235680_SNP [dm6]	C	A	2.967e^-4	0.709	SYNONYMOUS_CODING CG4483
3R	26853601	3R_26853601_SNP [dm3] 3R_31027879_SNP [dm6]	T	C	2.974e^-4	0.709	INTERGENIC
X	9374400	X_9374400_SNP [dm3] X_9480367_SNP [dm6]	C	A	2.976e^-4	0.709	INTRON mgl
2R	18652918	2R_18652918_SNP [dm3] 2R_22765413_SNP [dm6]	A	G	2.979e^-4	0.709	UTR_3_PRIME CG13527 DOWNSTREAM CG13527 INTRON CG42260
3L	9729980	3L_9729980_SNP [dm3] 3L_9736880_SNP [dm6]	A	G	2.979e^-4	0.709	INTRON CG42268	TF binding site BDTNP1_TFBS_dl
2L	7852733	2L_7852733_SNP [dm3] 2L_7852733_SNP [dm6]	A	C	2.986e^-4	0.709	INTRON CG14535
3R	25262070	3R_25262070_SNP [dm3] 3R_29436348_SNP [dm6]	T	A	2.988e^-4	0.709	INTRON Ptp99A
3R	13101002	3R_13101002_SNP [dm3] 3R_17275280_SNP [dm6]	T	A	2.989e^-4	0.709	INTERGENIC
2L	2859726	2L_2859726_SNP [dm3] 2L_2859726_SNP [dm6]	G	A	3.000e^-4	0.709	INTRON CG2991
X	18249326	X_18249326_SNP [dm3] X_18355293_SNP [dm6]	G	A	3.006e^-4	0.709	INTRON CG6123
2L	3086380	2L_3086380_SNP [dm3] 2L_3086380_SNP [dm6]	G	A	3.007e^-4	0.709	UTR_5_PRIME toc INTRON toc
3L	11121264	3L_11121264_SNP [dm3] 3L_11128164_SNP [dm6]	C	G	3.007e^-4	0.709	INTRON CG42575
2R	19707438	2R_19707438_SNP [dm3] 2R_23819915_SNP [dm6]	A	T	3.008e^-4	0.709	UPSTREAM CG5549 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	19707441	2R_19707441_SNP [dm3] 2R_23819918_SNP [dm6]	T	A	3.008e^-4	0.709	UPSTREAM CG5549 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	18754658	3L_18754658_SNP [dm3] 3L_18761558_SNP [dm6]	A	T	3.012e^-4	0.709	INTRON ftz-f1
2R	6015523	2R_6015523_SNP [dm3] 2R_10128018_SNP [dm6]	T	A	3.016e^-4	0.709	INTRON gem	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	24689746	3R_24689746_SNP [dm3] 3R_28864024_SNP [dm6]	C	T	3.018e^-4	0.709	SYNONYMOUS_CODING spg	TF binding site mE1_TFBS_chinmo
3R	5472590	3R_5472590_SNP [dm3] 3R_9646868_SNP [dm6]	A	G	3.019e^-4	0.709	UPSTREAM Fst INTRON Dh44
2L	13271365	2L_13271365_SNP [dm3] 2L_13271365_SNP [dm6]	G	A	3.021e^-4	0.709	SYNONYMOUS_CODING CG44085 UTR_5_PRIME CG44085	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13208514	3L_13208514_SNP [dm3] 3L_13215414_SNP [dm6]	T	G	3.030e^-4	0.71	UPSTREAM CR43914 EXON CR45097	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24749939	3R_24749939_SNP [dm3] 3R_28924217_SNP [dm6]	A	G	3.032e^-4	0.71	NON_SYNONYMOUS_CODING CG11828 DOWNSTREAM CG14521
X	10822100	X_10822100_SNP [dm3] X_10928067_SNP [dm6]	G	T	3.035e^-4	0.71	SYNONYMOUS_CODING CG2145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16059454	3R_16059454_SNP [dm3] 3R_20233732_SNP [dm6]	C	T	3.053e^-4	0.711	INTRON Nlg4
2L	3970864	2L_3970864_SNP [dm3] 2L_3970864_SNP [dm6]	C	G	3.053e^-4	0.711	INTRON fred
2L	18124756	2L_18124756_SNP [dm3] 2L_18124756_SNP [dm6]	C	T	3.053e^-4	0.711	SYNONYMOUS_CODING CG31785 INTRON CG5758	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	16243016	2L_16243016_SNP [dm3] 2L_16243016_SNP [dm6]	T	A	3.060e^-4	0.712	SYNONYMOUS_CODING CG42818
3R	23211317	3R_23211317_SNP [dm3] 3R_27385595_SNP [dm6]	C	A	3.072e^-4	0.712	INTRON side
3R	439323	3R_439323_SNP [dm3] 3R_4613601_SNP [dm6]	G	T	3.076e^-4	0.712	INTRON 5-HT2A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14463870	3R_14463870_SNP [dm3] 3R_18638148_SNP [dm6]	C	A	3.077e^-4	0.712	INTRON qin & 1 other
2L	3370164	2L_3370164_SNP [dm3] 2L_3370164_SNP [dm6]	T	A	3.087e^-4	0.712	UPSTREAM CG34394 INTRON CG34394
3R	14368998	3R_14368998_SNP [dm3] 3R_18543276_SNP [dm6]	G	C	3.089e^-4	0.712	INTRON fru
3R	19256668	3R_19256668_SNP [dm3] 3R_23430946_SNP [dm6]	A	T	3.091e^-4	0.712	UTR_5_PRIME CG4374 INTRON CG4374
3R	13460811	3R_13460811_INS [dm3] 3R_17635089_INS [dm6]	A	ACTCGAA	3.091e^-4	0.712	INTRON CG43175
3L	8542961	3L_8542961_SNP [dm3] 3L_8549861_SNP [dm6]	G	A	3.093e^-4	0.712	INTRON rhea	TF binding site BDTNP1_TFBS_twi
3L	603945	3L_603945_SNP [dm3] 3L_603945_SNP [dm6]	T	A	3.101e^-4	0.712	UTR_5_PRIME CG13893	TF binding site mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10108380	2L_10108380_SNP [dm3] 2L_10108380_SNP [dm6]	T	C	3.105e^-4	0.712	INTRON CG44153 & 1 other
3R	26879695	3R_26879695_SNP [dm3] 3R_31053973_SNP [dm6]	G	A	3.111e^-4	0.712	UPSTREAM l_3_03670 DOWNSTREAM dco INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3R	26783852	3R_26783852_SNP [dm3] 3R_30958130_SNP [dm6]	G	A	3.111e^-4	0.712	INTERGENIC
2L	3546251	2L_3546251_SNP [dm3] 2L_3546251_SNP [dm6]	A	G	3.117e^-4	0.712	INTRON drm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2R	10803069	2R_10803069_SNP [dm3] 2R_14915564_SNP [dm6]	C	T	3.118e^-4	0.712	INTRON CG10249
3L	9754536	3L_9754536_SNP [dm3] 3L_9761436_SNP [dm6]	T	C	3.118e^-4	0.712	DOWNSTREAM CR45407 INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	24426402	3R_24426402_INS [dm3] 3R_28600680_INS [dm6]	G	GTACG	3.122e^-4	0.712	UPSTREAM snoRNA:Psi28S-3405a INTRON Hrb98DE	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
X	18802446	X_18802446_SNP [dm3] X_18908413_SNP [dm6]	A	C	3.134e^-4	0.713	INTRON CG7378
2R	17016920	2R_17016920_SNP [dm3] 2R_21129415_SNP [dm6]	G	A	3.140e^-4	0.713	UTR_3_PRIME mago UPSTREAM CG4050 DOWNSTREAM Magi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	8806006	3L_8806006_SNP [dm3] 3L_8812906_SNP [dm6]	A	T	3.142e^-4	0.713	INTERGENIC
3L	15862847	3L_15862847_SNP [dm3] 3L_15869747_SNP [dm6]	A	C	3.153e^-4	0.713	INTRON pHCl	TF binding site mE1_TFBS_cad
2L	6303254	2L_6303254_SNP [dm3] 2L_6303254_SNP [dm6]	G	A	3.155e^-4	0.713	SYNONYMOUS_CODING Ddr
3L	13980488	3L_13980488_SNP [dm3] 3L_13987388_SNP [dm6]	A	C	3.162e^-4	0.713	UPSTREAM CG9040 DOWNSTREAM CG17362 INTRON CG17364
2L	9653174	2L_9653174_SNP [dm3] 2L_9653174_SNP [dm6]	T	G	3.162e^-4	0.713	SYNONYMOUS_CODING Apoltp
3L	7854478	3L_7854478_SNP [dm3] 3L_7861378_SNP [dm6]	T	C	3.163e^-4	0.713	INTRON Pdp1
3R	23382902	3R_23382902_SNP [dm3] 3R_27557180_SNP [dm6]	C	A	3.164e^-4	0.713	INTRON Klp98A	TF binding site BDTNP1_TFBS_z
2L	3520391	2L_3520391_SNP [dm3] 2L_3520391_SNP [dm6]	T	A	3.166e^-4	0.713	NON_SYNONYMOUS_CODING CG8851 UPSTREAM CG3213	TF binding site mE1_TFBS_cad
X	12899980	X_12899980_SNP [dm3] X_13005947_SNP [dm6]	G	C	3.168e^-4	0.713	INTRON rad
X	16872766	X_16872766_SNP [dm3] X_16978733_SNP [dm6]	T	C	3.171e^-4	0.713	INTRON CG45002
3L	8473972	3L_8473972_SNP [dm3] 3L_8480872_SNP [dm6]	G	A	3.173e^-4	0.713	INTRON CG43163	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13076561	2R_13076561_SNP [dm3] 2R_17189056_SNP [dm6]	C	G	3.184e^-4	0.714	UPSTREAM CR45323 EXON CR44389
3L	14220717	3L_14220717_SNP [dm3] 3L_14227617_SNP [dm6]	C	T	3.188e^-4	0.714	INTRON nuf
3R	18050163	3R_18050163_DEL [dm3] 3R_22224441_DEL [dm6]	GTAT	G	3.193e^-4	0.715	INTRON SKIP
2L	3522723	2L_3522723_SNP [dm3] 2L_3522723_SNP [dm6]	G	T	3.199e^-4	0.715	SYNONYMOUS_CODING Sr-CIV DOWNSTREAM CG8851
2L	5827466	2L_5827466_SNP [dm3] 2L_5827466_SNP [dm6]	C	T	3.213e^-4	0.716	INTRON TrissinR
3R	18263317	3R_18263317_SNP [dm3] 3R_22437595_SNP [dm6]	C	G	3.214e^-4	0.716	INTERGENIC
X	21305410	X_21305410_SNP [dm3] X_21434383_SNP [dm6]	A	T	3.219e^-4	0.716	INTRON CG42343	transposable element FlyBase
2L	4423774	2L_4423774_SNP [dm3] 2L_4423774_SNP [dm6]	C	T	3.220e^-4	0.716	INTRON CG15431	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7631939	2L_7631939_INS [dm3] 2L_7631939_INS [dm6]	T	TGATGGTGTGT...	3.234e^-4	0.719	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	3572190	2L_3572190_SNP [dm3] 2L_3572190_SNP [dm6]	T	G	3.241e^-4	0.719	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	15105040	3R_15105040_SNP [dm3] 3R_19279318_SNP [dm6]	T	G	3.246e^-4	0.719	SPLICE_SITE_REGION CR44173 EXON CR44173
X	11766654	X_11766654_SNP [dm3] X_11872621_SNP [dm6]	G	C	3.254e^-4	0.719	UTR_5_PRIME CG11802 UPSTREAM CG15739	TF binding site mE1_TFBS_cad
3L	8776574	3L_8776574_SNP [dm3] 3L_8783474_SNP [dm6]	G	A	3.255e^-4	0.719	INTRON Fhos
3L	6494113	3L_6494113_SNP [dm3] 3L_6501013_SNP [dm6]	G	A	3.255e^-4	0.719	INTRON sfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
3R	23211290	3R_23211290_DEL [dm3] 3R_27385568_DEL [dm6]	CC	C	3.258e^-4	0.719	INTRON side
3R	25204727	3R_25204727_SNP [dm3] 3R_29379005_SNP [dm6]	T	C	3.269e^-4	0.72	INTRON Ptp99A
2L	22206785	2L_22206785_SNP [dm3] 2L_22206785_SNP [dm6]	C	A	3.286e^-4	0.721	INTRON Ir40a	transposable element FlyBase
3L	5517014	3L_5517014_SNP [dm3] 3L_5523914_SNP [dm6]	T	A	3.289e^-4	0.721	INTRON Lkr
3R	15118893	3R_15118893_SNP [dm3] 3R_19293171_SNP [dm6]	C	T	3.290e^-4	0.721	INTERGENIC
3L	766427	3L_766427_SNP [dm3] 3L_766427_SNP [dm6]	C	A	3.291e^-4	0.721	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	13460707	3R_13460707_SNP [dm3] 3R_17634985_SNP [dm6]	T	G	3.295e^-4	0.721	INTRON CG43175
3L	4199352	3L_4199352_SNP [dm3] 3L_4199352_SNP [dm6]	A	G	3.301e^-4	0.721	SYNONYMOUS_CODING CG43367
3R	17246039	3R_17246039_SNP [dm3] 3R_21420317_SNP [dm6]	G	A	3.303e^-4	0.721	INTRON lbl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	8449486	2L_8449486_SNP [dm3] 2L_8449486_SNP [dm6]	T	C	3.305e^-4	0.721	UTR_5_PRIME U26 DOWNSTREAM fu12
3L	9107683	3L_9107683_SNP [dm3] 3L_9114583_SNP [dm6]	C	A	3.310e^-4	0.721	INTRON bol	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	10961661	2L_10961661_SNP [dm3] 2L_10961661_SNP [dm6]	C	G	3.311e^-4	0.721	INTRON dpr2
3R	25569204	3R_25569204_SNP [dm3] 3R_29743482_SNP [dm6]	A	G	3.315e^-4	0.721	SYNONYMOUS_CODING CG7609
X	17024955	X_17024955_SNP [dm3] X_17130922_SNP [dm6]	G	A	3.323e^-4	0.721	INTRON CG5004
X	10412109	X_10412109_SNP [dm3] X_10518076_SNP [dm6]	A	T	3.323e^-4	0.721	INTRON spri	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	16298742	3L_16298742_SNP [dm3] 3L_16305642_SNP [dm6]	G	C	3.324e^-4	0.721	SYNONYMOUS_CODING CG13043 UPSTREAM CG13063 DOWNSTREAM CG43249	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	18951640	2R_18951640_SNP [dm3] 2R_23064117_SNP [dm6]	T	C	3.330e^-4	0.721	SYNONYMOUS_CODING CG9890 UPSTREAM PPO3	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	10307218	3L_10307218_SNP [dm3] 3L_10314118_SNP [dm6]	T	A	3.334e^-4	0.721	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17443424	2L_17443424_DEL [dm3] 2L_17443424_DEL [dm6]	GTTG	G	3.344e^-4	0.723	INTRON dl
2R	9203490	2R_9203490_SNP [dm3] 2R_13315985_SNP [dm6]	A	C	3.357e^-4	0.724	INTERGENIC
X	14386797	X_14386797_SNP [dm3] X_14492764_SNP [dm6]	T	C	3.379e^-4	0.728	INTERGENIC
3R	414638	3R_414638_SNP [dm3] 3R_4588916_SNP [dm6]	A	T	3.393e^-4	0.731	INTRON CR45558
2R	15555238	2R_15555238_SNP [dm3] 2R_19667733_SNP [dm6]	G	A	3.397e^-4	0.731	SYNONYMOUS_CODING hrg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv
3R	21013047	3R_21013047_SNP [dm3] 3R_25187325_SNP [dm6]	T	C	3.409e^-4	0.732	INTRON lobo & 1 other	TF binding site BDTNP1_TFBS_dl
3R	13846938	3R_13846938_SNP [dm3] 3R_18021216_SNP [dm6]	A	T	3.415e^-4	0.733	UPSTREAM CG7785 DOWNSTREAM DNaseII INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	22008987	2L_22008987_DEL [dm3] 2L_22008987_DEL [dm6]	GT	C	3.431e^-4	0.733	INTERGENIC
2R	10264751	2R_10264751_SNP [dm3] 2R_14377246_SNP [dm6]	G	C	3.436e^-4	0.733	UPSTREAM Dh44-R1 DOWNSTREAM CG30075 INTERGENIC
X	21305261	X_21305261_SNP [dm3] X_21434234_SNP [dm6]	T	G	3.438e^-4	0.733	INTRON CG42343	transposable element FlyBase
2R	12581856	2R_12581856_SNP [dm3] 2R_16694351_SNP [dm6]	C	T	3.441e^-4	0.733	DOWNSTREAM CG5210 INTRON CG30463
3L	14121021	3L_14121021_SNP [dm3] 3L_14127921_SNP [dm6]	T	C	3.443e^-4	0.733	INTRON Sox21b
X	18165301	X_18165301_SNP [dm3] X_18271268_SNP [dm6]	T	C	3.448e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	18936684	3L_18936684_SNP [dm3] 3L_18943584_SNP [dm6]	A	G	3.451e^-4	0.733	INTRON CG32204
3L	12416449	3L_12416449_SNP [dm3] 3L_12423349_SNP [dm6]	G	A	3.453e^-4	0.733	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	14646734	X_14646734_SNP [dm3] X_14752701_SNP [dm6]	C	T	3.458e^-4	0.733	INTERGENIC
2R	9825468	2R_9825468_INS [dm3] 2R_13937963_INS [dm6]	T	TC	3.461e^-4	0.733	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3R	26783621	3R_26783621_SNP [dm3] 3R_30957899_SNP [dm6]	A	T	3.464e^-4	0.733	INTERGENIC
3R	16534434	3R_16534434_SNP [dm3] 3R_20708712_SNP [dm6]	T	C	3.464e^-4	0.733	INTRON Oamb
3L	768586	3L_768586_SNP [dm3] 3L_768586_SNP [dm6]	T	G	3.465e^-4	0.733	UPSTREAM tRNA:CR32480 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	15575954	X_15575954_SNP [dm3] X_15681921_SNP [dm6]	C	T	3.470e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
2R	10829995	2R_10829995_SNP [dm3] 2R_14942490_SNP [dm6]	G	A	3.496e^-4	0.733	UTR_5_PRIME CG10257
2L	7898706	2L_7898706_SNP [dm3] 2L_7898706_SNP [dm6]	G	T	3.499e^-4	0.733	INTRON Snoo
2L	7898707	2L_7898707_SNP [dm3] 2L_7898707_SNP [dm6]	T	G	3.499e^-4	0.733	INTRON Snoo
X	15659585	X_15659585_SNP [dm3] X_15765552_SNP [dm6]	C	T	3.509e^-4	0.733	SYNONYMOUS_CODING CG8952 INTRON CG17209
3L	6757119	3L_6757119_DEL [dm3] 3L_6764019_DEL [dm6]	AC	A	3.514e^-4	0.733	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA
2R	7627337	2R_7627337_SNP [dm3] 2R_11739832_SNP [dm6]	G	A	3.516e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5811604	3L_5811604_SNP [dm3] 3L_5818504_SNP [dm6]	C	T	3.525e^-4	0.733	INTRON vn
3R	24131579	3R_24131579_SNP [dm3] 3R_28305857_SNP [dm6]	T	A	3.530e^-4	0.733	INTERGENIC
X	18802557	X_18802557_SNP [dm3] X_18908524_SNP [dm6]	A	G	3.530e^-4	0.733	INTRON CG7378
2R	21124158	2R_21124158_DEL [dm3] 2R_25236635_DEL [dm6]	TT	T	3.533e^-4	0.733	INTRON CG9380	TF binding site mE1_TFBS_Kr
X	6693235	X_6693235_SNP [dm3] X_6799202_SNP [dm6]	C	T	3.539e^-4	0.733	INTRON C3G
3R	16170690	3R_16170690_SNP [dm3] 3R_20344968_SNP [dm6]	G	T	3.547e^-4	0.733	INTERGENIC
2L	10444245	2L_10444245_SNP [dm3] 2L_10444245_SNP [dm6]	A	G	3.549e^-4	0.733	INTRON loh	TF binding site BDTNP1_TFBS_twi
3R	13893844	3R_13893844_SNP [dm3] 3R_18068122_SNP [dm6]	G	A	3.553e^-4	0.733	INTERGENIC
3R	9673200	3R_9673200_SNP [dm3] 3R_13847478_SNP [dm6]	A	T	3.555e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_cad
3L	510123	3L_510123_SNP [dm3] 3L_510123_SNP [dm6]	C	T	3.560e^-4	0.733	INTRON klar
3L	510124	3L_510124_SNP [dm3] 3L_510124_SNP [dm6]	T	C	3.560e^-4	0.733	INTRON klar
3R	13965380	3R_13965380_SNP [dm3] 3R_18139658_SNP [dm6]	C	A	3.561e^-4	0.733	INTERGENIC
3L	12704641	3L_12704641_SNP [dm3] 3L_12711541_SNP [dm6]	A	G	3.586e^-4	0.733	INTERGENIC
3R	2991794	3R_2991794_SNP [dm3] 3R_7166072_SNP [dm6]	A	C	3.587e^-4	0.733	INTRON sas
2R	17755996	2R_17755996_DEL [dm3] 2R_21868491_DEL [dm6]	TT	C	3.588e^-4	0.733	INTERGENIC
2L	3334844	2L_3334844_SNP [dm3] 2L_3334844_SNP [dm6]	T	C	3.591e^-4	0.733	DOWNSTREAM E23 & 1 other INTERGENIC
2L	3222467	2L_3222467_SNP [dm3] 2L_3222467_SNP [dm6]	A	T	3.593e^-4	0.733	INTERGENIC
X	11613787	X_11613787_SNP [dm3] X_11719754_SNP [dm6]	T	C	3.623e^-4	0.733	UTR_3_PRIME prtp UPSTREAM Tango10	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6155556	2R_6155556_SNP [dm3] 2R_10268051_SNP [dm6]	T	A	3.625e^-4	0.733	UPSTREAM CAP INTRON CG12910	TF binding site mE1_TFBS_chinmo
X	18802495	X_18802495_SNP [dm3] X_18908462_SNP [dm6]	G	A	3.640e^-4	0.733	INTRON CG7378
3R	19198044	3R_19198044_SNP [dm3] 3R_23372322_SNP [dm6]	A	G	3.646e^-4	0.733	UPSTREAM CG42827 EXON CR44322
3L	10506720	3L_10506720_SNP [dm3] 3L_10513620_SNP [dm6]	C	T	3.649e^-4	0.733	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl
X	18802584	X_18802584_INS [dm3] X_18908551_INS [dm6]	GA	ATG	3.650e^-4	0.733	INTRON CG7378
3L	10241000	3L_10241000_SNP [dm3] 3L_10247900_SNP [dm6]	G	A	3.653e^-4	0.733	DOWNSTREAM CR44539 EXON CR44540
3L	14547537	3L_14547537_SNP [dm3] 3L_14554437_SNP [dm6]	G	T	3.655e^-4	0.733	INTERGENIC
3L	19400573	3L_19400573_SNP [dm3] 3L_19407473_SNP [dm6]	G	C	3.656e^-4	0.733	INTRON CG32206
2R	14721884	2R_14721884_SNP [dm3] 2R_18834379_SNP [dm6]	T	C	3.658e^-4	0.733	NON_SYNONYMOUS_CODING CG15098 UPSTREAM CG15083
X	7622951	X_7622951_SNP [dm3] X_7728918_SNP [dm6]	G	A	3.665e^-4	0.733	UTR_5_PRIME CG12155 UPSTREAM NELF-B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	8529431	2R_8529431_SNP [dm3] 2R_12641926_SNP [dm6]	G	A	3.671e^-4	0.733	SYNONYMOUS_CODING CG8785	TF binding site mE1_TFBS_cad
3R	11469756	3R_11469756_SNP [dm3] 3R_15644034_SNP [dm6]	C	G	3.672e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	27035159	3R_27035159_SNP [dm3] 3R_31209437_SNP [dm6]	G	A	3.674e^-4	0.733	INTRON chp
2R	9870771	2R_9870771_SNP [dm3] 2R_13983266_SNP [dm6]	C	T	3.675e^-4	0.733	UTR_5_PRIME Ctf4 UPSTREAM CG8067	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3R	1120202	3R_1120202_SNP [dm3] 3R_5294480_SNP [dm6]	C	A	3.693e^-4	0.733	SYNONYMOUS_CODING mtd	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11136911	2R_11136911_SNP [dm3] 2R_15249406_SNP [dm6]	C	T	3.707e^-4	0.733	SYNONYMOUS_CODING scb	TF binding site mE1_TFBS_cad
X	19162294	X_19162294_SNP [dm3] X_19268261_SNP [dm6]	C	T	3.709e^-4	0.733	INTRON Vav & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18742218	3R_18742218_DEL [dm3] 3R_22916496_DEL [dm6]	AA	G	3.710e^-4	0.733	INTRON klg
3L	1815466	3L_1815466_SNP [dm3] 3L_1815466_SNP [dm6]	A	G	3.718e^-4	0.733	INTRON GV1
2L	9846012	2L_9846012_SNP [dm3] 2L_9846012_SNP [dm6]	T	C	3.720e^-4	0.733	INTRON nAChRalpha6
X	7999288	X_7999288_INS [dm3] X_8105255_INS [dm6]	A	ACGAGGAA	3.721e^-4	0.733	INTRON Gclc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	6015440	2R_6015440_SNP [dm3] 2R_10127935_SNP [dm6]	G	A	3.731e^-4	0.733	INTRON gem	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5966593	3L_5966593_SNP [dm3] 3L_5973493_SNP [dm6]	T	C	3.735e^-4	0.733	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2R	17016927	2R_17016927_SNP [dm3] 2R_21129422_SNP [dm6]	A	C	3.737e^-4	0.733	UTR_3_PRIME mago UPSTREAM CG4050 DOWNSTREAM Magi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	8460768	3L_8460768_SNP [dm3] 3L_8467668_SNP [dm6]	C	A	3.742e^-4	0.733	SYNONYMOUS_CODING Gug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18652757	2R_18652757_SNP [dm3] 2R_22765252_SNP [dm6]	C	T	3.743e^-4	0.733	UTR_3_PRIME CG13527 DOWNSTREAM CG13527 INTRON CG42260
2L	3282592	2L_3282592_SNP [dm3] 2L_3282592_SNP [dm6]	T	G	3.744e^-4	0.733	INTERGENIC
3R	23382906	3R_23382906_SNP [dm3] 3R_27557184_SNP [dm6]	T	G	3.744e^-4	0.733	INTRON Klp98A	TF binding site BDTNP1_TFBS_z
3L	6699675	3L_6699675_SNP [dm3] 3L_6706575_SNP [dm6]	G	T	3.749e^-4	0.733	INTRON CG8519
X	9271917	X_9271917_SNP [dm3] X_9377884_SNP [dm6]	C	G	3.766e^-4	0.733	INTRON mgl
3R	13647745	3R_13647745_SNP [dm3] 3R_17822023_SNP [dm6]	A	T	3.767e^-4	0.733	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	13053266	2R_13053266_SNP [dm3] 2R_17165761_SNP [dm6]	A	G	3.768e^-4	0.733	SYNONYMOUS_CODING CG10953
3L	3715714	3L_3715714_DEL [dm3] 3L_3715714_DEL [dm6]	GTGTTAAACTTG...	G	3.768e^-4	0.733	UTR_3_PRIME CG32264 DOWNSTREAM CG43089
X	9106210	X_9106210_SNP [dm3] X_9212177_SNP [dm6]	A	T	3.769e^-4	0.733	INTERGENIC
2L	15819645	2L_15819645_SNP [dm3] 2L_15819645_SNP [dm6]	A	T	3.769e^-4	0.733	INTERGENIC
2L	888102	2L_888102_SNP [dm3] 2L_888102_SNP [dm6]	A	G	3.769e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	3846884	3L_3846884_DEL [dm3] 3L_3846884_DEL [dm6]	CTATT	G	3.769e^-4	0.733	INTRON Awh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
3R	202351	3R_202351_SNP [dm3] 3R_4376629_SNP [dm6]	A	G	3.786e^-4	0.733	EXON CR44922
3L	8300050	3L_8300050_SNP [dm3] 3L_8306950_SNP [dm6]	G	A	3.793e^-4	0.733	SYNONYMOUS_CODING Gr66a DOWNSTREAM BI-1
3L	18934457	3L_18934457_SNP [dm3] 3L_18941357_SNP [dm6]	T	G	3.794e^-4	0.733	INTRON CG32204
3L	13980491	3L_13980491_SNP [dm3] 3L_13987391_SNP [dm6]	T	C	3.796e^-4	0.733	UPSTREAM CG9040 DOWNSTREAM CG17362 INTRON CG17364
2L	8533835	2L_8533835_SNP [dm3] 2L_8533835_SNP [dm6]	G	C	3.801e^-4	0.733	INTRON CG17834	TF binding site mE1_TFBS_cad
3L	14992538	3L_14992538_SNP [dm3] 3L_14999438_SNP [dm6]	A	G	3.803e^-4	0.733	UPSTREAM Prosbeta2 INTRON mRpL39	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	4026232	2R_4026232_SNP [dm3] 2R_8138727_SNP [dm6]	T	G	3.806e^-4	0.733	INTRON Lpin
3L	2443451	3L_2443451_SNP [dm3] 3L_2443451_SNP [dm6]	C	T	3.807e^-4	0.733	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	21404434	3R_21404434_DEL [dm3] 3R_25578712_DEL [dm6]	GG	G	3.813e^-4	0.733	INTRON msi	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	10509501	2R_10509501_INS [dm3] 2R_14621996_INS [dm6]	G	GAG	3.820e^-4	0.733	UPSTREAM snoRNA:Me28S-C3227a & 4 others DOWNSTREAM snoRNA:Me18S-C1366 EXON Uhg5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
3L	9666032	3L_9666032_SNP [dm3] 3L_9672932_SNP [dm6]	A	C	3.821e^-4	0.733	INTRON fry
2L	20771024	2L_20771024_SNP [dm3] 2L_20771024_SNP [dm6]	C	T	3.822e^-4	0.733	UTR_5_PRIME cad	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	17834201	3L_17834201_SNP [dm3] 3L_17841101_SNP [dm6]	C	A	3.822e^-4	0.733	UPSTREAM CR45175 DOWNSTREAM CG5567 INTRON CG5577
2L	4779048	2L_4779048_SNP [dm3] 2L_4779048_SNP [dm6]	A	G	3.823e^-4	0.733	INTRON CG15630
3R	13850397	3R_13850397_SNP [dm3] 3R_18024675_SNP [dm6]	A	T	3.825e^-4	0.733	SYNONYMOUS_CODING CG7794 DOWNSTREAM CG7785	TF binding site mE1_TFBS_cad
3L	6949002	3L_6949002_SNP [dm3] 3L_6955902_SNP [dm6]	T	A	3.827e^-4	0.733	UTR_5_PRIME CG10077 UPSTREAM CG9948 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	16166896	2L_16166896_SNP [dm3] 2L_16166896_SNP [dm6]	G	A	3.831e^-4	0.733	INTRON Ca-alpha1D	TF binding site mE1_TFBS_HSA
3R	7120305	3R_7120305_SNP [dm3] 3R_11294583_SNP [dm6]	G	A	3.837e^-4	0.733	INTRON CR31386
3R	251259	3R_251259_SNP [dm3] 3R_4425537_SNP [dm6]	T	G	3.838e^-4	0.733	SYNONYMOUS_CODING srl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	1403582	3L_1403582_SNP [dm3] 3L_1403582_SNP [dm6]	G	T	3.843e^-4	0.733	INTRON Ptp61F
3R	18050344	3R_18050344_SNP [dm3] 3R_22224622_SNP [dm6]	A	T	3.843e^-4	0.733	INTRON SKIP
2L	8164576	2L_8164576_SNP [dm3] 2L_8164576_SNP [dm6]	T	A	3.853e^-4	0.733	INTRON Piezo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	8164586	2L_8164586_SNP [dm3] 2L_8164586_SNP [dm6]	A	T	3.853e^-4	0.733	INTRON Piezo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	3629773	2L_3629773_SNP [dm3] 2L_3629773_SNP [dm6]	T	C	3.857e^-4	0.733	INTRON for	TF binding site BDTNP1_TFBS_twi
2R	7865731	2R_7865731_SNP [dm3] 2R_11978226_SNP [dm6]	C	A	3.857e^-4	0.733	SYNONYMOUS_CODING CG30036 DOWNSTREAM CG8290 & 1 other	TF binding site mE1_TFBS_sens
2R	9009446	2R_9009446_SNP [dm3] 2R_13121941_SNP [dm6]	T	C	3.858e^-4	0.733	INTRON CG13325
3R	16897491	3R_16897491_SNP [dm3] 3R_21071769_SNP [dm6]	C	T	3.863e^-4	0.733	SYNONYMOUS_CODING r-l DOWNSTREAM AnxB9	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	12585036	X_12585036_SNP [dm3] X_12691003_SNP [dm6]	T	C	3.865e^-4	0.733	SYNONYMOUS_CODING Smr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25512381	3R_25512381_SNP [dm3] 3R_29686659_SNP [dm6]	T	C	3.865e^-4	0.733	DOWNSTREAM Gycalpha99B INTRON Obp99c
2R	19512281	2R_19512281_SNP [dm3] 2R_23624758_SNP [dm6]	C	T	3.871e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15886671	3L_15886671_SNP [dm3] 3L_15893571_SNP [dm6]	T	C	3.880e^-4	0.733	INTRON pHCl
2L	17443376	2L_17443376_SNP [dm3] 2L_17443376_SNP [dm6]	C	T	3.885e^-4	0.733	INTRON dl	TF binding site BDTNP1_TFBS_dl
2R	8955759	2R_8955759_SNP [dm3] 2R_13068254_SNP [dm6]	C	T	3.891e^-4	0.733	INTRON Drl-2	TF binding site mE1_TFBS_chinmo
2L	16193185	2L_16193185_SNP [dm3] 2L_16193185_SNP [dm6]	T	C	3.893e^-4	0.733	INTERGENIC
3R	15717481	3R_15717481_SNP [dm3] 3R_19891759_SNP [dm6]	T	C	3.898e^-4	0.733	INTRON CG4733
3L	6769887	3L_6769887_SNP [dm3] 3L_6776787_SNP [dm6]	T	G	3.900e^-4	0.733	INTERGENIC
2R	17570852	2R_17570852_SNP [dm3] 2R_21683347_SNP [dm6]	A	G	3.906e^-4	0.733	INTRON CG30263	TF binding site mE1_TFBS_cad
X	21337143	X_21337143_SNP [dm3] X_21466116_SNP [dm6]	G	A	3.920e^-4	0.733	INTERGENIC
2L	16187637	2L_16187637_SNP [dm3] 2L_16187637_SNP [dm6]	G	A	3.923e^-4	0.733	UTR_3_PRIME Ca-alpha1D INTRON Ca-alpha1D
3L	6756754	3L_6756754_SNP [dm3] 3L_6763654_SNP [dm6]	T	G	3.926e^-4	0.733	UPSTREAM CG32392 INTERGENIC	TF binding site mE1_TFBS_bab1
X	7999105	X_7999105_SNP [dm3] X_8105072_SNP [dm6]	C	T	3.932e^-4	0.733	SYNONYMOUS_CODING Gclc	TF binding site mE1_TFBS_chinmo
3R	16533849	3R_16533849_SNP [dm3] 3R_20708127_SNP [dm6]	A	G	3.933e^-4	0.733	INTRON Oamb
3R	14956730	3R_14956730_SNP [dm3] 3R_19131008_SNP [dm6]	T	C	3.933e^-4	0.733	INTRON CG6040	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	1140264	3R_1140264_SNP [dm3] 3R_5314542_SNP [dm6]	G	A	3.936e^-4	0.733	INTRON mtd
3R	19251970	3R_19251970_SNP [dm3] 3R_23426248_SNP [dm6]	T	A	3.937e^-4	0.733	UPSTREAM CG43694 INTRON CG4374
2L	14394810	2L_14394810_SNP [dm3] 2L_14394810_SNP [dm6]	G	A	3.943e^-4	0.733	INTRON elB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16213387	2L_16213387_SNP [dm3] 2L_16213387_SNP [dm6]	G	A	3.952e^-4	0.733	DOWNSTREAM CG31819 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7488509	2L_7488509_SNP [dm3] 2L_7488509_SNP [dm6]	A	G	3.954e^-4	0.733	INTRON Ziz
3L	19229071	3L_19229071_SNP [dm3] 3L_19235971_SNP [dm6]	A	G	3.962e^-4	0.733	UPSTREAM CG33647 & 1 other INTERGENIC
3L	3940367	3L_3940367_SNP [dm3] 3L_3940367_SNP [dm6]	C	T	3.962e^-4	0.733	UPSTREAM CR43916 & 1 other DOWNSTREAM CG10863 INTERGENIC
3R	18959231	3R_18959231_SNP [dm3] 3R_23133509_SNP [dm6]	T	C	3.967e^-4	0.733	INTRON hh	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv

By genomic position
Variant impact
Gene name

Wolbachia_Depth_Cov phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results