DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.243e^-10)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	<2e-16

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	124.3929	6.9112e-29
In_2L_t	7.9591	0.0187

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2430 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Show entries

Search:

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	13746320	2R_13746320_SNP [dm3] 2R_17858815_SNP [dm6]	C	T	6.461e^-7	0.411	INTRON olf186-F
2R	16251297	2R_16251297_SNP [dm3] 2R_20363792_SNP [dm6]	A	T	1.111e^-6	0.411	INTERGENIC
3L	15883094	3L_15883094_SNP [dm3] 3L_15889994_SNP [dm6]	C	T	1.213e^-6	0.411	INTRON pHCl
2R	8895851	2R_8895851_SNP [dm3] 2R_13008346_SNP [dm6]	G	A	1.807e^-6	0.411	DOWNSTREAM Su_z_2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	6476394	X_6476394_SNP [dm3] X_6582361_SNP [dm6]	G	C	1.921e^-6	0.411	SYNONYMOUS_CODING CG34417 INTRON CG34417
3L	6757397	3L_6757397_INS [dm3] 3L_6764297_INS [dm6]	T	TGCAG	2.223e^-6	0.411	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2R	12364551	2R_12364551_SNP [dm3] 2R_16477046_SNP [dm6]	A	C	2.388e^-6	0.411	INTERGENIC
3R	17238781	3R_17238781_SNP [dm3] 3R_21413059_SNP [dm6]	A	G	2.681e^-6	0.411	INTRON lbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8895935	2R_8895935_SNP [dm3] 2R_13008430_SNP [dm6]	C	A	3.069e^-6	0.411	DOWNSTREAM Su_z_2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	17238782	3R_17238782_SNP [dm3] 3R_21413060_SNP [dm6]	G	T	3.264e^-6	0.411	INTRON lbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15279681	3R_15279681_SNP [dm3] 3R_19453959_SNP [dm6]	C	T	3.310e^-6	0.411	INTRON CG31221
2R	7612650	2R_7612650_SNP [dm3] 2R_11725145_SNP [dm6]	T	C	3.480e^-6	0.411	SYNONYMOUS_CODING pyr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7488723	2L_7488723_SNP [dm3] 2L_7488723_SNP [dm6]	G	A	3.640e^-6	0.411	INTRON Ziz
2R	9249016	2R_9249016_SNP [dm3] 2R_13361511_SNP [dm6]	A	T	3.708e^-6	0.411	DOWNSTREAM CR45312 INTERGENIC
3L	9728221	3L_9728221_SNP [dm3] 3L_9735121_SNP [dm6]	A	G	4.031e^-6	0.411	SYNONYMOUS_CODING CG42268 UTR_3_PRIME CG42268
3L	6757339	3L_6757339_SNP [dm3] 3L_6764239_SNP [dm6]	A	G	4.031e^-6	0.411	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	6757387	3L_6757387_SNP [dm3] 3L_6764287_SNP [dm6]	T	A	4.170e^-6	0.411	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2L	3514424	2L_3514424_SNP [dm3] 2L_3514424_SNP [dm6]	C	T	4.199e^-6	0.411	UPSTREAM CG17593 INTRON CG33123	TF binding site mE1_TFBS_cad
3L	6757340	3L_6757340_SNP [dm3] 3L_6764240_SNP [dm6]	A	C	4.286e^-6	0.411	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	15884504	3L_15884504_SNP [dm3] 3L_15891404_SNP [dm6]	T	C	4.814e^-6	0.411	INTRON pHCl
3R	26879026	3R_26879026_SNP [dm3] 3R_31053304_SNP [dm6]	C	T	5.418e^-6	0.411	NON_SYNONYMOUS_CODING l_3_03670 DOWNSTREAM Aph-4 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	8149957	2L_8149957_SNP [dm3] 2L_8149957_SNP [dm6]	G	A	5.698e^-6	0.411	INTRON CG8552 & 1 other
3R	16376863	3R_16376863_SNP [dm3] 3R_20551141_SNP [dm6]	C	T	5.716e^-6	0.411	UPSTREAM Stat92E INTRON Stat92E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
3R	23019195	3R_23019195_SNP [dm3] 3R_27193473_SNP [dm6]	C	T	5.922e^-6	0.411	INTRON Ser	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3R	25557404	3R_25557404_SNP [dm3] 3R_29731682_SNP [dm6]	A	G	5.931e^-6	0.411	SYNONYMOUS_CODING Kul UTR_3_PRIME Kul	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7612542	2R_7612542_SNP [dm3] 2R_11725037_SNP [dm6]	T	C	6.157e^-6	0.411	SYNONYMOUS_CODING pyr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9249395	2R_9249395_SNP [dm3] 2R_13361890_SNP [dm6]	T	G	6.232e^-6	0.411	EXON CR45312
3L	5056818	3L_5056818_SNP [dm3] 3L_5056818_SNP [dm6]	C	G	6.236e^-6	0.411	INTRON Con
3L	5056820	3L_5056820_SNP [dm3] 3L_5056820_SNP [dm6]	T	G	6.553e^-6	0.411	INTRON Con
2R	11000178	2R_11000178_SNP [dm3] 2R_15112673_SNP [dm6]	C	A	6.581e^-6	0.411	INTERGENIC
2L	1024299	2L_1024299_DEL [dm3] 2L_1024299_DEL [dm6]	GACTG	G	6.943e^-6	0.42	INTRON IA-2
2R	9249409	2R_9249409_SNP [dm3] 2R_13361904_SNP [dm6]	C	A	7.233e^-6	0.424	EXON CR45312
X	14962284	X_14962284_SNP [dm3] X_15068251_SNP [dm6]	G	C	7.689e^-6	0.425	NON_SYNONYMOUS_CODING dob DOWNSTREAM Lsd-2
2R	13745797	2R_13745797_SNP [dm3] 2R_17858292_SNP [dm6]	A	G	7.700e^-6	0.425	INTRON olf186-F
3L	6757343	3L_6757343_SNP [dm3] 3L_6764243_SNP [dm6]	C	A	8.435e^-6	0.446	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2L	4778958	2L_4778958_SNP [dm3] 2L_4778958_SNP [dm6]	C	A	8.561e^-6	0.446	INTRON CG15630
3L	6757470	3L_6757470_SNP [dm3] 3L_6764370_SNP [dm6]	T	C	8.901e^-6	0.451	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	6757468	3L_6757468_SNP [dm3] 3L_6764368_SNP [dm6]	T	C	9.154e^-6	0.452	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	10003968	3L_10003968_SNP [dm3] 3L_10010868_SNP [dm6]	G	A	9.474e^-6	0.456	INTRON dpr6
3R	13893806	3R_13893806_DEL [dm3] 3R_18068084_DEL [dm6]	TG	A	9.839e^-6	0.457	INTERGENIC
2L	9112662	2L_9112662_SNP [dm3] 2L_9112662_SNP [dm6]	G	T	9.995e^-6	0.457	INTRON Or30a
3R	26885357	3R_26885357_SNP [dm3] 3R_31059635_SNP [dm6]	C	A	1.080e^-5	0.478	INTRON dco	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	6757409	3L_6757409_SNP [dm3] 3L_6764309_SNP [dm6]	C	T	1.097e^-5	0.478	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3R	13893851	3R_13893851_INS [dm3] 3R_18068129_INS [dm6]	A	AA	1.203e^-5	0.511	INTERGENIC
3R	23378137	3R_23378137_SNP [dm3] 3R_27552415_SNP [dm6]	T	A	1.227e^-5	0.511	INTRON Klp98A	TF binding site mE1_TFBS_cad
3L	7851788	3L_7851788_SNP [dm3] 3L_7858688_SNP [dm6]	A	G	1.380e^-5	0.527	INTRON Pdp1	TF binding site mE1_TFBS_HSA
2L	9112660	2L_9112660_SNP [dm3] 2L_9112660_SNP [dm6]	T	G	1.450e^-5	0.527	INTRON Or30a
2L	3514519	2L_3514519_SNP [dm3] 2L_3514519_SNP [dm6]	C	A	1.451e^-5	0.527	UPSTREAM CG17593 INTRON CG33123	TF binding site mE1_TFBS_cad
3R	21020347	3R_21020347_SNP [dm3] 3R_25194625_SNP [dm6]	T	C	1.464e^-5	0.527	UPSTREAM lobo & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	6757150	3L_6757150_SNP [dm3] 3L_6764050_SNP [dm6]	C	A	1.465e^-5	0.527	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA
3R	14840851	3R_14840851_SNP [dm3] 3R_19015129_SNP [dm6]	C	T	1.507e^-5	0.527	INTRON gukh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	6941793	2L_6941793_SNP [dm3] 2L_6941793_SNP [dm6]	T	C	1.526e^-5	0.527	INTRON CG18304	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	9201997	2R_9201997_SNP [dm3] 2R_13314492_SNP [dm6]	C	T	1.544e^-5	0.527	INTERGENIC
2L	13163495	2L_13163495_SNP [dm3] 2L_13163495_SNP [dm6]	T	C	1.566e^-5	0.527	NON_SYNONYMOUS_CODING DnaJ-H UTR_3_PRIME DnaJ-H DOWNSTREAM CG5204	TF binding site mE1_TFBS_cad
3R	26800542	3R_26800542_SNP [dm3] 3R_30974820_SNP [dm6]	A	C	1.645e^-5	0.527	INTRON 5-HT7
2L	1024368	2L_1024368_INS [dm3] 2L_1024368_INS [dm6]	A	AATTCATGGA	1.672e^-5	0.527	INTRON IA-2
2L	1024353	2L_1024353_SNP [dm3] 2L_1024353_SNP [dm6]	T	A	1.678e^-5	0.527	INTRON IA-2
X	13683486	X_13683486_SNP [dm3] X_13789453_SNP [dm6]	T	C	1.716e^-5	0.527	DOWNSTREAM CG10993 INTRON inaE
X	5946894	X_5946894_DEL [dm3] X_6052861_DEL [dm6]	CGGCTCAGCTC...	C	1.758e^-5	0.527	INTRON CG5921
3L	6757173	3L_6757173_DEL [dm3] 3L_6764073_DEL [dm6]	TT	T	1.809e^-5	0.527	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA
3L	18753910	3L_18753910_INS [dm3] 3L_18760810_INS [dm6]	C	CTCTCCC	1.818e^-5	0.527	INTRON ftz-f1	TF binding site mE1_TFBS_Trl
3L	5966628	3L_5966628_SNP [dm3] 3L_5973528_SNP [dm6]	T	C	1.824e^-5	0.527	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	10050281	2L_10050281_SNP [dm3] 2L_10050281_SNP [dm6]	C	T	1.826e^-5	0.527	SYNONYMOUS_CODING CG33301	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6757178	3L_6757178_SNP [dm3] 3L_6764078_SNP [dm6]	T	C	1.838e^-5	0.527	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA
3R	12849379	3R_12849379_SNP [dm3] 3R_17023657_SNP [dm6]	A	G	1.889e^-5	0.527	INTRON Pxd
3L	10066407	3L_10066407_DEL [dm3] 3L_10073307_DEL [dm6]	TAC	A	1.899e^-5	0.527	INTRON dpr6
3L	6757282	3L_6757282_SNP [dm3] 3L_6764182_SNP [dm6]	G	A	1.948e^-5	0.527	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	2835279	3L_2835279_SNP [dm3] 3L_2835279_SNP [dm6]	A	T	1.950e^-5	0.527	INTRON CG43444
3R	13464813	3R_13464813_SNP [dm3] 3R_17639091_SNP [dm6]	T	C	1.971e^-5	0.527	INTRON CG43175 EXON CR45222
2R	11000136	2R_11000136_SNP [dm3] 2R_15112631_SNP [dm6]	C	T	1.988e^-5	0.527	INTERGENIC
2R	9249407	2R_9249407_SNP [dm3] 2R_13361902_SNP [dm6]	G	T	2.002e^-5	0.527	EXON CR45312
3L	6757372	3L_6757372_SNP [dm3] 3L_6764272_SNP [dm6]	T	G	2.022e^-5	0.527	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3R	26878142	3R_26878142_SNP [dm3] 3R_31052420_SNP [dm6]	T	A	2.069e^-5	0.532	UTR_3_PRIME Aph-4 DOWNSTREAM l_3_03670	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	14341635	3L_14341635_SNP [dm3] 3L_14348535_SNP [dm6]	G	C	2.119e^-5	0.532	INTRON fz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15886310	3L_15886310_SNP [dm3] 3L_15893210_SNP [dm6]	C	T	2.161e^-5	0.532	INTRON pHCl
3R	26913678	3R_26913678_SNP [dm3] 3R_31087956_SNP [dm6]	G	C	2.216e^-5	0.532	INTERGENIC
3R	12849244	3R_12849244_SNP [dm3] 3R_17023522_SNP [dm6]	A	C	2.258e^-5	0.532	INTRON Pxd
2L	4392083	2L_4392083_SNP [dm3] 2L_4392083_SNP [dm6]	C	T	2.299e^-5	0.532	SYNONYMOUS_CODING Tps1 DOWNSTREAM CG3652	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15884625	3L_15884625_SNP [dm3] 3L_15891525_SNP [dm6]	A	G	2.326e^-5	0.532	INTRON pHCl
X	6285366	X_6285366_SNP [dm3] X_6391333_SNP [dm6]	G	A	2.376e^-5	0.532	INTERGENIC
3R	9951655	3R_9951655_SNP [dm3] 3R_14125933_SNP [dm6]	A	G	2.377e^-5	0.532	START_GAINED RpII140 UTR_5_PRIME RpII140 UPSTREAM 140up	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16533989	3R_16533989_SNP [dm3] 3R_20708267_SNP [dm6]	C	A	2.403e^-5	0.532	INTRON Oamb
2L	3502332	2L_3502332_INS [dm3] 2L_3502332_INS [dm6]	T	CA	2.518e^-5	0.532	INTRON tim
3R	26878414	3R_26878414_SNP [dm3] 3R_31052692_SNP [dm6]	C	T	2.524e^-5	0.532	UTR_3_PRIME l_3_03670 DOWNSTREAM Aph-4	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	11465416	2L_11465416_SNP [dm3] 2L_11465416_SNP [dm6]	G	A	2.538e^-5	0.532	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	13347692	X_13347692_SNP [dm3] X_13453659_SNP [dm6]	T	C	2.591e^-5	0.532	INTRON Neto
3L	14163847	3L_14163847_SNP [dm3] 3L_14170747_SNP [dm6]	C	T	2.597e^-5	0.532	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	15279425	3R_15279425_SNP [dm3] 3R_19453703_SNP [dm6]	G	T	2.603e^-5	0.532	INTRON CG31221
3L	4994610	3L_4994610_SNP [dm3] 3L_4994610_SNP [dm6]	C	T	2.604e^-5	0.532	SYNONYMOUS_CODING CG32232 INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	2835271	3L_2835271_SNP [dm3] 3L_2835271_SNP [dm6]	T	A	2.612e^-5	0.532	INTRON CG43444
3L	6757294	3L_6757294_SNP [dm3] 3L_6764194_SNP [dm6]	C	A	2.636e^-5	0.532	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	18753899	3L_18753899_SNP [dm3] 3L_18760799_SNP [dm6]	C	A	2.686e^-5	0.532	INTRON ftz-f1	TF binding site mE1_TFBS_Trl
3L	9340735	3L_9340735_SNP [dm3] 3L_9347635_SNP [dm6]	A	G	2.710e^-5	0.532	DOWNSTREAM PGRP-LC INTRON PGRP-LC
3R	17252972	3R_17252972_SNP [dm3] 3R_21427250_SNP [dm6]	C	G	2.718e^-5	0.532	INTRON lbl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	26780417	3R_26780417_SNP [dm3] 3R_30954695_SNP [dm6]	A	G	2.729e^-5	0.532	INTERGENIC
3R	26785264	3R_26785264_SNP [dm3] 3R_30959542_SNP [dm6]	G	A	2.729e^-5	0.532	UPSTREAM CG15548 INTERGENIC
3L	5365580	3L_5365580_SNP [dm3] 3L_5372480_SNP [dm6]	C	T	2.750e^-5	0.532	UPSTREAM CR44516 INTERGENIC
2L	7898740	2L_7898740_SNP [dm3] 2L_7898740_SNP [dm6]	C	T	2.830e^-5	0.542	INTRON Snoo	TF binding site mE1_TFBS_cad
3L	8797613	3L_8797613_SNP [dm3] 3L_8804513_SNP [dm6]	C	T	2.939e^-5	0.546	UPSTREAM CG34427 & 1 other DOWNSTREAM CG34426 INTERGENIC
3L	6757251	3L_6757251_SNP [dm3] 3L_6764151_SNP [dm6]	A	G	2.983e^-5	0.546	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA

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By genomic position
Variant impact
Gene name

Wolbachia_Depth_Cov phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results