DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.269e^-13)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	<2e-16

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	124.3935	6.909e-29
In_2L_t	8.2081	0.0165

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2234 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	13746320	2R_13746320_SNP [dm3] 2R_17858815_SNP [dm6]	C	T	1.012e^-6	0.83	INTRON olf186-F
2R	9201997	2R_9201997_SNP [dm3] 2R_13314492_SNP [dm6]	C	T	1.220e^-6	0.83	INTERGENIC
X	14962284	X_14962284_SNP [dm3] X_15068251_SNP [dm6]	G	C	2.163e^-6	0.83	NON_SYNONYMOUS_CODING dob DOWNSTREAM Lsd-2
3L	9728221	3L_9728221_SNP [dm3] 3L_9735121_SNP [dm6]	A	G	2.186e^-6	0.83	SYNONYMOUS_CODING CG42268 UTR_3_PRIME CG42268
3L	10066407	3L_10066407_DEL [dm3] 3L_10073307_DEL [dm6]	TAC	A	3.090e^-6	0.83	INTRON dpr6
2R	12364551	2R_12364551_SNP [dm3] 2R_16477046_SNP [dm6]	A	C	3.466e^-6	0.83	INTERGENIC
2L	13163495	2L_13163495_SNP [dm3] 2L_13163495_SNP [dm6]	T	C	4.049e^-6	0.83	NON_SYNONYMOUS_CODING DnaJ-H UTR_3_PRIME DnaJ-H DOWNSTREAM CG5204	TF binding site mE1_TFBS_cad
2R	13745797	2R_13745797_SNP [dm3] 2R_17858292_SNP [dm6]	A	G	4.206e^-6	0.83	INTRON olf186-F
3L	15884504	3L_15884504_SNP [dm3] 3L_15891404_SNP [dm6]	T	C	5.195e^-6	0.83	INTRON pHCl
X	6476394	X_6476394_SNP [dm3] X_6582361_SNP [dm6]	G	C	5.742e^-6	0.83	SYNONYMOUS_CODING CG34417 INTRON CG34417
3L	15884625	3L_15884625_SNP [dm3] 3L_15891525_SNP [dm6]	A	G	5.880e^-6	0.83	INTRON pHCl
3R	6923260	3R_6923260_SNP [dm3] 3R_11097538_SNP [dm6]	G	A	5.990e^-6	0.83	INTERGENIC
3L	15883094	3L_15883094_SNP [dm3] 3L_15889994_SNP [dm6]	C	T	6.203e^-6	0.83	INTRON pHCl
3L	5966628	3L_5966628_SNP [dm3] 3L_5973528_SNP [dm6]	T	C	6.297e^-6	0.83	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	16804548	2L_16804548_SNP [dm3] 2L_16804548_SNP [dm6]	T	A	7.122e^-6	0.83	UPSTREAM CG13272 & 1 other INTRON CG13280
2L	16162246	2L_16162246_SNP [dm3] 2L_16162246_SNP [dm6]	C	T	7.658e^-6	0.83	INTERGENIC
3L	5966535	3L_5966535_SNP [dm3] 3L_5973435_SNP [dm6]	A	T	8.165e^-6	0.83	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	6757397	3L_6757397_INS [dm3] 3L_6764297_INS [dm6]	T	TGCAG	8.342e^-6	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	5056818	3L_5056818_SNP [dm3] 3L_5056818_SNP [dm6]	C	G	9.393e^-6	0.83	INTRON Con
3L	14341635	3L_14341635_SNP [dm3] 3L_14348535_SNP [dm6]	G	C	9.784e^-6	0.83	INTRON fz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23019195	3R_23019195_SNP [dm3] 3R_27193473_SNP [dm6]	C	T	9.892e^-6	0.83	INTRON Ser	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3L	5056820	3L_5056820_SNP [dm3] 3L_5056820_SNP [dm6]	T	G	9.957e^-6	0.83	INTRON Con
2R	9203115	2R_9203115_SNP [dm3] 2R_13315610_SNP [dm6]	G	A	1.064e^-5	0.83	INTERGENIC
3L	6757339	3L_6757339_SNP [dm3] 3L_6764239_SNP [dm6]	A	G	1.080e^-5	0.83	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	6757340	3L_6757340_SNP [dm3] 3L_6764240_SNP [dm6]	A	C	1.169e^-5	0.83	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	1403624	3L_1403624_SNP [dm3] 3L_1403624_SNP [dm6]	A	G	1.180e^-5	0.83	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	18128446	3R_18128446_SNP [dm3] 3R_22302724_SNP [dm6]	T	G	1.261e^-5	0.83	INTRON CG7084	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9203420	2R_9203420_SNP [dm3] 2R_13315915_SNP [dm6]	T	C	1.366e^-5	0.83	INTERGENIC
2R	8895851	2R_8895851_SNP [dm3] 2R_13008346_SNP [dm6]	G	A	1.369e^-5	0.83	DOWNSTREAM Su_z_2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6757387	3L_6757387_SNP [dm3] 3L_6764287_SNP [dm6]	T	A	1.467e^-5	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3R	14840851	3R_14840851_SNP [dm3] 3R_19015129_SNP [dm6]	C	T	1.499e^-5	0.83	INTRON gukh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	18753910	3L_18753910_INS [dm3] 3L_18760810_INS [dm6]	C	CTCTCCC	1.653e^-5	0.83	INTRON ftz-f1	TF binding site mE1_TFBS_Trl
3L	6757470	3L_6757470_SNP [dm3] 3L_6764370_SNP [dm6]	T	C	1.663e^-5	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	10536562	3L_10536562_SNP [dm3] 3L_10543462_SNP [dm6]	T	G	1.690e^-5	0.83	INTRON A2bp1
2L	4778958	2L_4778958_SNP [dm3] 2L_4778958_SNP [dm6]	C	A	1.698e^-5	0.83	INTRON CG15630
2L	15819726	2L_15819726_SNP [dm3] 2L_15819726_SNP [dm6]	C	A	1.745e^-5	0.83	INTERGENIC	TF binding site mE1_TFBS_run
2R	13745804	2R_13745804_SNP [dm3] 2R_17858299_SNP [dm6]	C	T	1.759e^-5	0.83	INTRON olf186-F
3L	5483287	3L_5483287_SNP [dm3] 3L_5490187_SNP [dm6]	T	G	1.852e^-5	0.83	INTERGENIC
2L	17782654	2L_17782654_INS [dm3] 2L_17782654_INS [dm6]	C	CTGTTTAAGTCACAGC...	1.870e^-5	0.83	INTERGENIC
2R	16251297	2R_16251297_SNP [dm3] 2R_20363792_SNP [dm6]	A	T	1.929e^-5	0.83	INTERGENIC
3L	6757468	3L_6757468_SNP [dm3] 3L_6764368_SNP [dm6]	T	C	1.980e^-5	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2R	7612650	2R_7612650_SNP [dm3] 2R_11725145_SNP [dm6]	T	C	1.989e^-5	0.83	SYNONYMOUS_CODING pyr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20331319	3R_20331319_SNP [dm3] 3R_24505597_SNP [dm6]	G	A	2.042e^-5	0.83	INTERGENIC
X	5946894	X_5946894_DEL [dm3] X_6052861_DEL [dm6]	CGGCTCAGCTC...	C	2.046e^-5	0.83	INTRON CG5921
2R	8895935	2R_8895935_SNP [dm3] 2R_13008430_SNP [dm6]	C	A	2.093e^-5	0.83	DOWNSTREAM Su_z_2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	15886310	3L_15886310_SNP [dm3] 3L_15893210_SNP [dm6]	C	T	2.108e^-5	0.83	INTRON pHCl
3R	13893851	3R_13893851_INS [dm3] 3R_18068129_INS [dm6]	A	AA	2.168e^-5	0.83	INTERGENIC
3L	7002669	3L_7002669_SNP [dm3] 3L_7009569_SNP [dm6]	T	C	2.297e^-5	0.83	INTRON Mp
3L	10066439	3L_10066439_SNP [dm3] 3L_10073339_SNP [dm6]	A	C	2.298e^-5	0.83	INTRON dpr6
3L	6757343	3L_6757343_SNP [dm3] 3L_6764243_SNP [dm6]	C	A	2.319e^-5	0.83	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	18753899	3L_18753899_SNP [dm3] 3L_18760799_SNP [dm6]	C	A	2.326e^-5	0.83	INTRON ftz-f1	TF binding site mE1_TFBS_Trl
X	2463412	X_2463412_SNP [dm3] X_2569379_SNP [dm6]	A	G	2.504e^-5	0.83	INTRON Pdfr
2R	14170768	2R_14170768_SNP [dm3] 2R_18283263_SNP [dm6]	A	T	2.585e^-5	0.83	INTRON sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7612542	2R_7612542_SNP [dm3] 2R_11725037_SNP [dm6]	T	C	2.757e^-5	0.83	SYNONYMOUS_CODING pyr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25557404	3R_25557404_SNP [dm3] 3R_29731682_SNP [dm6]	A	G	2.784e^-5	0.83	SYNONYMOUS_CODING Kul UTR_3_PRIME Kul	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9203495	2R_9203495_SNP [dm3] 2R_13315990_SNP [dm6]	G	A	2.809e^-5	0.83	INTERGENIC
2L	1093771	2L_1093771_SNP [dm3] 2L_1093771_SNP [dm6]	G	C	2.809e^-5	0.83	INTRON CG4629
X	14962447	X_14962447_SNP [dm3] X_15068414_SNP [dm6]	G	A	2.814e^-5	0.83	NON_SYNONYMOUS_CODING dob DOWNSTREAM Lsd-2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	18249326	X_18249326_SNP [dm3] X_18355293_SNP [dm6]	G	A	2.822e^-5	0.83	INTRON CG6123
3R	13965223	3R_13965223_SNP [dm3] 3R_18139501_SNP [dm6]	A	G	2.851e^-5	0.83	INTERGENIC
3L	11571893	3L_11571893_SNP [dm3] 3L_11578793_SNP [dm6]	G	C	2.920e^-5	0.83	UPSTREAM CG33270 DOWNSTREAM CG43390 INTERGENIC
2L	3514424	2L_3514424_SNP [dm3] 2L_3514424_SNP [dm6]	C	T	3.055e^-5	0.83	UPSTREAM CG17593 INTRON CG33123	TF binding site mE1_TFBS_cad
2L	17789691	2L_17789691_SNP [dm3] 2L_17789691_SNP [dm6]	A	C	3.107e^-5	0.83	INTRON CadN2
X	13683486	X_13683486_SNP [dm3] X_13789453_SNP [dm6]	T	C	3.215e^-5	0.83	DOWNSTREAM CG10993 INTRON inaE
2R	10292473	2R_10292473_SNP [dm3] 2R_14404968_SNP [dm6]	A	G	3.221e^-5	0.83	INTERGENIC
3R	17238782	3R_17238782_SNP [dm3] 3R_21413060_SNP [dm6]	G	T	3.249e^-5	0.83	INTRON lbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17238781	3R_17238781_SNP [dm3] 3R_21413059_SNP [dm6]	A	G	3.269e^-5	0.83	INTRON lbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11000178	2R_11000178_SNP [dm3] 2R_15112673_SNP [dm6]	C	A	3.373e^-5	0.83	INTERGENIC
2R	9203456	2R_9203456_INS [dm3] 2R_13315951_INS [dm6]	C	CC	3.398e^-5	0.83	INTERGENIC
2L	9112662	2L_9112662_SNP [dm3] 2L_9112662_SNP [dm6]	G	T	3.435e^-5	0.83	INTRON Or30a
3L	18685820	3L_18685820_SNP [dm3] 3L_18692720_SNP [dm6]	C	A	3.502e^-5	0.83	DOWNSTREAM CR43987 INTERGENIC
2L	9112660	2L_9112660_SNP [dm3] 2L_9112660_SNP [dm6]	T	G	3.549e^-5	0.83	INTRON Or30a
3R	16533989	3R_16533989_SNP [dm3] 3R_20708267_SNP [dm6]	C	A	3.572e^-5	0.83	INTRON Oamb
2L	12182857	2L_12182857_SNP [dm3] 2L_12182857_SNP [dm6]	G	A	3.588e^-5	0.83	INTRON aret
3R	13893806	3R_13893806_DEL [dm3] 3R_18068084_DEL [dm6]	TG	A	3.655e^-5	0.83	INTERGENIC
X	10411688	X_10411688_SNP [dm3] X_10517655_SNP [dm6]	A	T	3.705e^-5	0.83	INTRON spri	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6407920	2L_6407920_SNP [dm3] 2L_6407920_SNP [dm6]	T	A	3.777e^-5	0.83	INTRON CG42368
3L	6757409	3L_6757409_SNP [dm3] 3L_6764309_SNP [dm6]	C	T	3.788e^-5	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	7851788	3L_7851788_SNP [dm3] 3L_7858688_SNP [dm6]	A	G	3.854e^-5	0.83	INTRON Pdp1	TF binding site mE1_TFBS_HSA
2R	6851414	2R_6851414_SNP [dm3] 2R_10963909_SNP [dm6]	A	T	3.903e^-5	0.83	INTERGENIC
2R	9249016	2R_9249016_SNP [dm3] 2R_13361511_SNP [dm6]	A	T	3.957e^-5	0.83	DOWNSTREAM CR45312 INTERGENIC
3L	2091195	3L_2091195_SNP [dm3] 3L_2091195_SNP [dm6]	G	A	3.962e^-5	0.83	INTRON sls	TF binding site mE1_TFBS_HSA
2L	17782672	2L_17782672_SNP [dm3] 2L_17782672_SNP [dm6]	T	A	4.030e^-5	0.83	INTERGENIC
3R	19253522	3R_19253522_SNP [dm3] 3R_23427800_SNP [dm6]	T	G	4.053e^-5	0.83	INTRON CG4374	TF binding site BDTNP1_TFBS_prd
3R	26879026	3R_26879026_SNP [dm3] 3R_31053304_SNP [dm6]	C	T	4.068e^-5	0.83	NON_SYNONYMOUS_CODING l_3_03670 DOWNSTREAM Aph-4 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	9261718	2R_9261718_SNP [dm3] 2R_13374213_SNP [dm6]	T	C	4.237e^-5	0.83	INTERGENIC
2L	19100397	2L_19100397_SNP [dm3] 2L_19100397_SNP [dm6]	C	T	4.310e^-5	0.83	INTRON Lim3
3R	9951655	3R_9951655_SNP [dm3] 3R_14125933_SNP [dm6]	A	G	4.362e^-5	0.83	START_GAINED RpII140 UTR_5_PRIME RpII140 UPSTREAM 140up	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5966665	3L_5966665_SNP [dm3] 3L_5973565_SNP [dm6]	T	G	4.509e^-5	0.83	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3R	9683940	3R_9683940_SNP [dm3] 3R_13858218_SNP [dm6]	T	G	4.522e^-5	0.83	INTERGENIC
2L	17782894	2L_17782894_INS [dm3] 2L_17782894_INS [dm6]	T	TCC	4.535e^-5	0.83	INTERGENIC
2L	12479186	2L_12479186_SNP [dm3] 2L_12479186_SNP [dm6]	C	T	4.569e^-5	0.83	INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2462011	3L_2462011_SNP [dm3] 3L_2462011_SNP [dm6]	T	C	4.649e^-5	0.83	UPSTREAM CG45186 INTRON CG45186
3R	9950932	3R_9950932_SNP [dm3] 3R_14125210_SNP [dm6]	G	A	4.691e^-5	0.83	SYNONYMOUS_CODING 140up UPSTREAM RpII140 DOWNSTREAM twf
2L	3464695	2L_3464695_SNP [dm3] 2L_3464695_SNP [dm6]	G	A	4.737e^-5	0.83	SYNONYMOUS_CODING msl-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	12582825	2L_12582825_SNP [dm3] 2L_12582825_SNP [dm6]	A	T	4.856e^-5	0.83	EXON CR44595 & 1 other
3L	8797613	3L_8797613_SNP [dm3] 3L_8804513_SNP [dm6]	C	T	4.890e^-5	0.83	UPSTREAM CG34427 & 1 other DOWNSTREAM CG34426 INTERGENIC
3L	14121021	3L_14121021_SNP [dm3] 3L_14127921_SNP [dm6]	T	C	4.930e^-5	0.83	INTRON Sox21b
3R	14840861	3R_14840861_SNP [dm3] 3R_19015139_SNP [dm6]	C	T	4.993e^-5	0.83	INTRON gukh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	6757150	3L_6757150_SNP [dm3] 3L_6764050_SNP [dm6]	C	A	5.005e^-5	0.83	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA
2R	17671195	2R_17671195_SNP [dm3] 2R_21783690_SNP [dm6]	T	A	5.010e^-5	0.83	INTERGENIC
2R	17671196	2R_17671196_SNP [dm3] 2R_21783691_SNP [dm6]	T	A	5.010e^-5	0.83	INTERGENIC
3R	14615003	3R_14615003_SNP [dm3] 3R_18789281_SNP [dm6]	G	A	5.018e^-5	0.83	INTRON CG7720
2L	12582782	2L_12582782_SNP [dm3] 2L_12582782_SNP [dm6]	A	G	5.025e^-5	0.83	EXON CR44595 & 1 other
3L	7852896	3L_7852896_INS [dm3] 3L_7859796_INS [dm6]	A	AA	5.129e^-5	0.83	INTRON Pdp1
2R	17756124	2R_17756124_SNP [dm3] 2R_21868619_SNP [dm6]	G	T	5.143e^-5	0.83	INTERGENIC
2R	6851395	2R_6851395_SNP [dm3] 2R_10963890_SNP [dm6]	G	C	5.207e^-5	0.83	INTERGENIC
2R	9203490	2R_9203490_SNP [dm3] 2R_13315985_SNP [dm6]	A	C	5.230e^-5	0.83	INTERGENIC
X	17028314	X_17028314_SNP [dm3] X_17134281_SNP [dm6]	T	C	5.312e^-5	0.83	SYNONYMOUS_CODING CG5004
3L	4994610	3L_4994610_SNP [dm3] 3L_4994610_SNP [dm6]	C	T	5.324e^-5	0.83	SYNONYMOUS_CODING CG32232 INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	1403582	3L_1403582_SNP [dm3] 3L_1403582_SNP [dm6]	G	T	5.337e^-5	0.83	INTRON Ptp61F
2L	13270545	2L_13270545_SNP [dm3] 2L_13270545_SNP [dm6]	A	G	5.380e^-5	0.83	INTRON CG44085
X	19541038	X_19541038_SNP [dm3] X_19647005_SNP [dm6]	G	A	5.382e^-5	0.83	UTR_3_PRIME Ranbp21 UPSTREAM Arp10
3R	21020347	3R_21020347_SNP [dm3] 3R_25194625_SNP [dm6]	T	C	5.408e^-5	0.83	UPSTREAM lobo & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	8149957	2L_8149957_SNP [dm3] 2L_8149957_SNP [dm6]	G	A	5.456e^-5	0.83	INTRON CG8552 & 1 other
X	20242074	X_20242074_DEL [dm3] X_20371047_DEL [dm6]	CAGC	C	5.459e^-5	0.83	INTERGENIC
3R	13464813	3R_13464813_SNP [dm3] 3R_17639091_SNP [dm6]	T	C	5.550e^-5	0.83	INTRON CG43175 EXON CR45222
3L	5966558	3L_5966558_INS [dm3] 3L_5973458_INS [dm6]	T	TATCT	5.553e^-5	0.83	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2R	9209279	2R_9209279_SNP [dm3] 2R_13321774_SNP [dm6]	G	A	5.585e^-5	0.83	INTERGENIC
2R	19179567	2R_19179567_DEL [dm3] 2R_23292044_DEL [dm6]	CC	C	5.590e^-5	0.83	UPSTREAM CR44783 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6260680	2R_6260680_SNP [dm3] 2R_10373175_SNP [dm6]	T	C	5.597e^-5	0.83	INTRON CG42732
3L	15886249	3L_15886249_SNP [dm3] 3L_15893149_SNP [dm6]	T	C	5.607e^-5	0.83	INTRON pHCl
2L	4392083	2L_4392083_SNP [dm3] 2L_4392083_SNP [dm6]	C	T	5.823e^-5	0.83	SYNONYMOUS_CODING Tps1 DOWNSTREAM CG3652	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14163847	3L_14163847_SNP [dm3] 3L_14170747_SNP [dm6]	C	T	5.890e^-5	0.83	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	9203429	2R_9203429_SNP [dm3] 2R_13315924_SNP [dm6]	T	A	6.001e^-5	0.83	INTERGENIC
X	14962508	X_14962508_SNP [dm3] X_15068475_SNP [dm6]	T	G	6.010e^-5	0.83	SYNONYMOUS_CODING dob DOWNSTREAM Lsd-2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6757173	3L_6757173_DEL [dm3] 3L_6764073_DEL [dm6]	TT	T	6.072e^-5	0.83	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA
3R	11828964	3R_11828964_SNP [dm3] 3R_16003242_SNP [dm6]	C	T	6.110e^-5	0.83	SYNONYMOUS_CODING srp UTR_3_PRIME srp	TF binding site mE1_TFBS_cad
3L	6757178	3L_6757178_SNP [dm3] 3L_6764078_SNP [dm6]	T	C	6.195e^-5	0.83	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA
X	7874997	X_7874997_SNP [dm3] X_7980964_SNP [dm6]	G	A	6.300e^-5	0.83	INTRON sn
2L	4241787	2L_4241787_SNP [dm3] 2L_4241787_SNP [dm6]	T	C	6.316e^-5	0.83	UPSTREAM CR45720 DOWNSTREAM CR44058 INTRON CR44058
2R	9203452	2R_9203452_SNP [dm3] 2R_13315947_SNP [dm6]	C	A	6.331e^-5	0.83	INTERGENIC
3R	14845056	3R_14845056_SNP [dm3] 3R_19019334_SNP [dm6]	G	C	6.341e^-5	0.83	NON_SYNONYMOUS_CODING gukh INTRON gukh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6758125	3L_6758125_SNP [dm3] 3L_6765025_SNP [dm6]	T	C	6.355e^-5	0.83	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Stat92E
3L	12093563	3L_12093563_SNP [dm3] 3L_12100463_SNP [dm6]	T	C	6.380e^-5	0.83	INTERGENIC
2R	9249395	2R_9249395_SNP [dm3] 2R_13361890_SNP [dm6]	T	G	6.388e^-5	0.83	EXON CR45312
2R	9013556	2R_9013556_SNP [dm3] 2R_13126051_SNP [dm6]	A	T	6.399e^-5	0.83	DOWNSTREAM CG13325 INTERGENIC
3L	6757282	3L_6757282_SNP [dm3] 3L_6764182_SNP [dm6]	G	A	6.423e^-5	0.83	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	13965330	3R_13965330_SNP [dm3] 3R_18139608_SNP [dm6]	G	A	6.493e^-5	0.83	INTERGENIC
3R	26891512	3R_26891512_INS [dm3] 3R_31065790_INS [dm6]	T	TGTAT	6.539e^-5	0.83	INTRON Sox100B
2R	9203443	2R_9203443_SNP [dm3] 2R_13315938_SNP [dm6]	A	C	6.561e^-5	0.83	INTERGENIC
3R	23215296	3R_23215296_SNP [dm3] 3R_27389574_SNP [dm6]	G	C	6.585e^-5	0.83	INTRON side	TF binding site mE1_TFBS_chinmo
2R	20094191	2R_20094191_SNP [dm3] 2R_24206668_SNP [dm6]	C	T	6.615e^-5	0.83	SYNONYMOUS_CODING CG11406 UTR_5_PRIME CG11406	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	11827789	3R_11827789_SNP [dm3] 3R_16002067_SNP [dm6]	A	C	6.682e^-5	0.83	INTRON srp	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	9951627	3R_9951627_SNP [dm3] 3R_14125905_SNP [dm6]	T	A	6.690e^-5	0.83	START_GAINED RpII140 UTR_5_PRIME RpII140 UPSTREAM 140up	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1024299	2L_1024299_DEL [dm3] 2L_1024299_DEL [dm6]	GACTG	G	6.692e^-5	0.83	INTRON IA-2
X	9318732	X_9318732_SNP [dm3] X_9424699_SNP [dm6]	G	T	6.705e^-5	0.83	INTRON mgl
X	9105066	X_9105066_SNP [dm3] X_9211033_SNP [dm6]	C	G	6.989e^-5	0.83	UPSTREAM CG12119 INTERGENIC
3L	2091178	3L_2091178_SNP [dm3] 3L_2091178_SNP [dm6]	A	G	7.015e^-5	0.83	INTRON sls	TF binding site mE1_TFBS_HSA
3L	2485807	3L_2485807_SNP [dm3] 3L_2485807_SNP [dm6]	T	G	7.035e^-5	0.83	INTRON CG45186	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
2R	14721884	2R_14721884_SNP [dm3] 2R_18834379_SNP [dm6]	T	C	7.063e^-5	0.83	NON_SYNONYMOUS_CODING CG15098 UPSTREAM CG15083
3L	9896484	3L_9896484_SNP [dm3] 3L_9903384_SNP [dm6]	A	T	7.104e^-5	0.83	DOWNSTREAM nudE INTERGENIC
2R	8483772	2R_8483772_SNP [dm3] 2R_12596267_SNP [dm6]	T	G	7.491e^-5	0.83	UPSTREAM CR43909 INTRON Amph
3L	10003968	3L_10003968_SNP [dm3] 3L_10010868_SNP [dm6]	G	A	7.581e^-5	0.83	INTRON dpr6
2R	9249409	2R_9249409_SNP [dm3] 2R_13361904_SNP [dm6]	C	A	7.624e^-5	0.83	EXON CR45312
2R	9203492	2R_9203492_SNP [dm3] 2R_13315987_SNP [dm6]	G	A	7.644e^-5	0.83	INTERGENIC
2L	12582916	2L_12582916_SNP [dm3] 2L_12582916_SNP [dm6]	G	T	7.648e^-5	0.83	DOWNSTREAM CR44596 EXON CR44595
3L	5955978	3L_5955978_SNP [dm3] 3L_5962878_SNP [dm6]	C	A	7.657e^-5	0.83	INTERGENIC
3R	9951634	3R_9951634_SNP [dm3] 3R_14125912_SNP [dm6]	C	A	7.682e^-5	0.83	UTR_5_PRIME RpII140 UPSTREAM 140up	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5545664	2L_5545664_SNP [dm3] 2L_5545664_SNP [dm6]	A	G	7.705e^-5	0.83	UTR_3_PRIME Lam	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad
3R	22694245	3R_22694245_SNP [dm3] 3R_26868523_SNP [dm6]	A	G	7.721e^-5	0.83	SYNONYMOUS_CODING His2Av DOWNSTREAM BM-40-SPARC
2R	8517284	2R_8517284_SNP [dm3] 2R_12629779_SNP [dm6]	G	A	7.747e^-5	0.83	SYNONYMOUS_CODING muskelin
3R	282807	3R_282807_SNP [dm3] 3R_4457085_SNP [dm6]	T	A	7.759e^-5	0.83	INTRON CG31522	TF binding site mE1_TFBS_cad
2R	3924217	2R_3924217_DEL [dm3] 2R_8036712_DEL [dm6]	GGAGTGCAGTGCAGTCGCAG...	G	7.864e^-5	0.83	INTRON Optix
3R	13100994	3R_13100994_SNP [dm3] 3R_17275272_SNP [dm6]	T	C	7.984e^-5	0.83	INTERGENIC
2L	12582877	2L_12582877_SNP [dm3] 2L_12582877_SNP [dm6]	G	A	7.984e^-5	0.83	DOWNSTREAM CR44596 EXON CR44595
3R	20834602	3R_20834602_SNP [dm3] 3R_25008880_SNP [dm6]	C	G	8.009e^-5	0.83	INTRON tnc	TF binding site mE1_TFBS_chinmo
3L	9973832	3L_9973832_SNP [dm3] 3L_9980732_SNP [dm6]	C	T	8.022e^-5	0.83	INTRON dpr6
X	15998863	X_15998863_SNP [dm3] X_16104830_SNP [dm6]	C	T	8.042e^-5	0.83	UTR_5_PRIME CG42353 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv
3L	6757313	3L_6757313_SNP [dm3] 3L_6764213_SNP [dm6]	T	A	8.093e^-5	0.83	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	14936435	3L_14936435_SNP [dm3] 3L_14943335_SNP [dm6]	A	G	8.133e^-5	0.83	DOWNSTREAM DCX-EMAP & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	9112672	2L_9112672_SNP [dm3] 2L_9112672_SNP [dm6]	T	G	8.138e^-5	0.83	INTRON Or30a
3L	8797616	3L_8797616_SNP [dm3] 3L_8804516_SNP [dm6]	A	G	8.170e^-5	0.83	UPSTREAM CG34427 & 1 other DOWNSTREAM CG34426 INTERGENIC
3L	6757372	3L_6757372_SNP [dm3] 3L_6764272_SNP [dm6]	T	G	8.191e^-5	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2R	9203499	2R_9203499_SNP [dm3] 2R_13315994_SNP [dm6]	T	G	8.199e^-5	0.83	INTERGENIC
3R	25946474	3R_25946474_SNP [dm3] 3R_30120752_SNP [dm6]	C	T	8.226e^-5	0.83	SYNONYMOUS_CODING sima UTR_3_PRIME sima	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	20523337	3L_20523337_SNP [dm3] 3L_20530237_SNP [dm6]	T	C	8.240e^-5	0.83	INTRON Rcd2	TF binding site BDTNP1_TFBS_dl
2L	12582887	2L_12582887_SNP [dm3] 2L_12582887_SNP [dm6]	C	A	8.247e^-5	0.83	DOWNSTREAM CR44596 EXON CR44595
2L	3629773	2L_3629773_SNP [dm3] 2L_3629773_SNP [dm6]	T	C	8.254e^-5	0.83	INTRON for	TF binding site BDTNP1_TFBS_twi
3L	14160905	3L_14160905_SNP [dm3] 3L_14167805_SNP [dm6]	T	G	8.269e^-5	0.83	INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs
2L	9112676	2L_9112676_SNP [dm3] 2L_9112676_SNP [dm6]	T	A	8.333e^-5	0.83	INTRON Or30a
3R	18189865	3R_18189865_SNP [dm3] 3R_22364143_SNP [dm6]	C	T	8.460e^-5	0.83	DOWNSTREAM CG5382 INTRON CG7071 & 1 other	TF binding site mE1_TFBS_sens
2L	13163259	2L_13163259_INS [dm3] 2L_13163259_INS [dm6]	T	TT	8.494e^-5	0.83	UTR_3_PRIME DnaJ-H DOWNSTREAM DnaJ-H & 1 other
3L	6757251	3L_6757251_SNP [dm3] 3L_6764151_SNP [dm6]	A	G	8.564e^-5	0.83	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	14170739	2R_14170739_SNP [dm3] 2R_18283234_SNP [dm6]	A	G	8.580e^-5	0.83	SYNONYMOUS_CODING sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19707438	2R_19707438_SNP [dm3] 2R_23819915_SNP [dm6]	A	T	8.658e^-5	0.83	UPSTREAM CG5549 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	19707441	2R_19707441_SNP [dm3] 2R_23819918_SNP [dm6]	T	A	8.658e^-5	0.83	UPSTREAM CG5549 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	14992538	3L_14992538_SNP [dm3] 3L_14999438_SNP [dm6]	A	G	8.715e^-5	0.83	UPSTREAM Prosbeta2 INTRON mRpL39	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3L	6757537	3L_6757537_SNP [dm3] 3L_6764437_SNP [dm6]	C	A	8.734e^-5	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Stat92E
2R	9203477	2R_9203477_SNP [dm3] 2R_13315972_SNP [dm6]	A	T	8.771e^-5	0.83	INTERGENIC
3R	13444501	3R_13444501_SNP [dm3] 3R_17618779_SNP [dm6]	C	G	8.775e^-5	0.83	UTR_5_PRIME CG14324 UPSTREAM CG14326 & 2 others DOWNSTREAM tRNA:V3b:90BC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6757294	3L_6757294_SNP [dm3] 3L_6764194_SNP [dm6]	C	A	8.798e^-5	0.83	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	16685250	2R_16685250_SNP [dm3] 2R_20797745_SNP [dm6]	C	T	8.866e^-5	0.83	INTERGENIC	TF binding site mE1_TFBS_cad
3L	20149764	3L_20149764_SNP [dm3] 3L_20156664_SNP [dm6]	T	C	9.032e^-5	0.83	INTRON CG42674	TF binding site mE1_TFBS_cad
2R	12362124	2R_12362124_SNP [dm3] 2R_16474619_SNP [dm6]	G	T	9.152e^-5	0.83	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	3278336	2L_3278336_SNP [dm3] 2L_3278336_SNP [dm6]	G	A	9.180e^-5	0.83	SYNONYMOUS_CODING CG3332 INTRON CG3332
2L	9188435	2L_9188435_DEL [dm3] 2L_9188435_DEL [dm6]	TA	T	9.294e^-5	0.83	INTRON tai
3R	20332286	3R_20332286_SNP [dm3] 3R_24506564_SNP [dm6]	G	A	9.301e^-5	0.83	INTERGENIC
2R	12577126	2R_12577126_SNP [dm3] 2R_16689621_SNP [dm6]	A	G	9.335e^-5	0.83	INTRON CG30463
3L	2091196	3L_2091196_SNP [dm3] 3L_2091196_SNP [dm6]	A	T	9.452e^-5	0.83	INTRON sls	TF binding site mE1_TFBS_HSA
3L	6758127	3L_6758127_SNP [dm3] 3L_6765027_SNP [dm6]	G	A	9.498e^-5	0.83	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Stat92E
3L	18749704	3L_18749704_SNP [dm3] 3L_18756604_SNP [dm6]	A	T	9.503e^-5	0.83	INTRON ftz-f1
3R	24749626	3R_24749626_SNP [dm3] 3R_28923904_SNP [dm6]	A	T	9.507e^-5	0.83	INTRON CG11828
2L	11552298	2L_11552298_SNP [dm3] 2L_11552298_SNP [dm6]	C	A	9.560e^-5	0.83	INTERGENIC
2R	12365006	2R_12365006_SNP [dm3] 2R_16477501_SNP [dm6]	C	G	9.591e^-5	0.83	INTERGENIC
3L	586134	3L_586134_SNP [dm3] 3L_586134_SNP [dm6]	C	A	9.647e^-5	0.83	INTRON Kah
3L	2773732	3L_2773732_SNP [dm3] 3L_2773732_SNP [dm6]	C	A	9.670e^-5	0.83	SYNONYMOUS_CODING CG12093 UPSTREAM Atg2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	17565317	X_17565317_SNP [dm3] X_17671284_SNP [dm6]	A	G	9.780e^-5	0.83	SYNONYMOUS_CODING CG12990
3L	12519601	3L_12519601_SNP [dm3] 3L_12526501_SNP [dm6]	A	G	9.880e^-5	0.83	DOWNSTREAM nst INTRON eIF-2beta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10436873	3L_10436873_SNP [dm3] 3L_10443773_SNP [dm6]	C	T	9.882e^-5	0.83	INTERGENIC
2R	9253988	2R_9253988_SNP [dm3] 2R_13366483_SNP [dm6]	T	C	9.972e^-5	0.83	INTERGENIC
2L	6303254	2L_6303254_SNP [dm3] 2L_6303254_SNP [dm6]	G	A	1.000e^-4	0.83	SYNONYMOUS_CODING Ddr
3R	13965380	3R_13965380_SNP [dm3] 3R_18139658_SNP [dm6]	C	A	1.002e^-4	0.83	INTERGENIC
3R	14841974	3R_14841974_SNP [dm3] 3R_19016252_SNP [dm6]	G	C	1.011e^-4	0.83	NON_SYNONYMOUS_CODING gukh INTRON gukh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	14747470	3R_14747470_DEL [dm3] 3R_18921748_DEL [dm6]	TT	T	1.019e^-4	0.83	INTRON Xrp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	17280709	3L_17280709_SNP [dm3] 3L_17287609_SNP [dm6]	T	A	1.022e^-4	0.83	INTERGENIC
2L	12584379	2L_12584379_SNP [dm3] 2L_12584379_SNP [dm6]	C	T	1.023e^-4	0.83	DOWNSTREAM CR44595 INTERGENIC
2L	5437230	2L_5437230_SNP [dm3] 2L_5437230_SNP [dm6]	C	T	1.024e^-4	0.83	DOWNSTREAM snoRNA:Me28S-A2486 INTRON CR31647
2R	11000136	2R_11000136_SNP [dm3] 2R_15112631_SNP [dm6]	C	T	1.031e^-4	0.83	INTERGENIC
3R	17238700	3R_17238700_SNP [dm3] 3R_21412978_SNP [dm6]	G	T	1.037e^-4	0.83	INTRON lbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2763498	X_2763498_SNP [dm3] X_2869465_SNP [dm6]	G	A	1.037e^-4	0.83	INTRON kirre
X	2810402	X_2810402_SNP [dm3] X_2916369_SNP [dm6]	C	G	1.040e^-4	0.83	INTRON kirre
X	17673707	X_17673707_SNP [dm3] X_17779674_SNP [dm6]	C	T	1.045e^-4	0.83	DOWNSTREAM unc-4 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6923529	3R_6923529_SNP [dm3] 3R_11097807_SNP [dm6]	A	C	1.048e^-4	0.83	INTERGENIC
3R	13689398	3R_13689398_SNP [dm3] 3R_17863676_SNP [dm6]	G	C	1.058e^-4	0.83	INTRON tinc
X	12970197	X_12970197_SNP [dm3] X_13076164_SNP [dm6]	G	A	1.059e^-4	0.83	UTR_3_PRIME rad
3R	13464812	3R_13464812_SNP [dm3] 3R_17639090_SNP [dm6]	C	T	1.062e^-4	0.83	INTRON CG43175 EXON CR45222
3R	24131595	3R_24131595_SNP [dm3] 3R_28305873_SNP [dm6]	C	G	1.080e^-4	0.83	INTERGENIC
2L	12582823	2L_12582823_SNP [dm3] 2L_12582823_SNP [dm6]	T	C	1.088e^-4	0.83	EXON CR44595 & 1 other
2R	8484537	2R_8484537_INS [dm3] 2R_12597032_INS [dm6]	A	AAAAGAAGAAAAA...	1.096e^-4	0.83	INTRON Amph
3L	7746091	3L_7746091_SNP [dm3] 3L_7752991_SNP [dm6]	A	C	1.103e^-4	0.83	INTRON CG32373
3R	25557524	3R_25557524_SNP [dm3] 3R_29731802_SNP [dm6]	G	A	1.103e^-4	0.83	SYNONYMOUS_CODING Kul UTR_3_PRIME Kul	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9815937	3L_9815937_SNP [dm3] 3L_9822837_SNP [dm6]	C	G	1.116e^-4	0.83	DOWNSTREAM Ilp5 INTRON CG43897
3R	26885357	3R_26885357_SNP [dm3] 3R_31059635_SNP [dm6]	C	A	1.120e^-4	0.83	INTRON dco	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	23774661	3R_23774661_SNP [dm3] 3R_27948939_SNP [dm6]	G	A	1.120e^-4	0.83	UPSTREAM mfrn INTRON Gp93	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3L	17961288	3L_17961288_DEL [dm3] 3L_17968188_DEL [dm6]	GGCTAATTAACGATGGCATT...	G	1.125e^-4	0.83	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	17027962	X_17027962_SNP [dm3] X_17133929_SNP [dm6]	A	G	1.132e^-4	0.83	INTRON CG5004
3L	15886671	3L_15886671_SNP [dm3] 3L_15893571_SNP [dm6]	T	C	1.134e^-4	0.83	INTRON pHCl
2L	10050281	2L_10050281_SNP [dm3] 2L_10050281_SNP [dm6]	C	T	1.143e^-4	0.83	SYNONYMOUS_CODING CG33301	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25569204	3R_25569204_SNP [dm3] 3R_29743482_SNP [dm6]	A	G	1.145e^-4	0.83	SYNONYMOUS_CODING CG7609
2L	8326028	2L_8326028_SNP [dm3] 2L_8326028_SNP [dm6]	T	A	1.145e^-4	0.83	UPSTREAM CG7781 INTERGENIC
3L	6757312	3L_6757312_SNP [dm3] 3L_6764212_SNP [dm6]	T	C	1.159e^-4	0.83	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	15759532	3R_15759532_SNP [dm3] 3R_19933810_SNP [dm6]	A	G	1.170e^-4	0.83	SYNONYMOUS_CODING mira INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15886299	3L_15886299_SNP [dm3] 3L_15893199_SNP [dm6]	T	A	1.176e^-4	0.83	INTRON pHCl
2R	17993682	2R_17993682_SNP [dm3] 2R_22106177_SNP [dm6]	C	T	1.176e^-4	0.83	UTR_3_PRIME Vrp1 DOWNSTREAM CG6613
3R	25148050	3R_25148050_SNP [dm3] 3R_29322328_SNP [dm6]	G	T	1.192e^-4	0.83	INTERGENIC
3L	5365580	3L_5365580_SNP [dm3] 3L_5372480_SNP [dm6]	C	T	1.197e^-4	0.83	UPSTREAM CR44516 INTERGENIC
3L	4876024	3L_4876024_SNP [dm3] 3L_4876024_SNP [dm6]	G	A	1.205e^-4	0.83	INTRON CG17150
2R	9204794	2R_9204794_SNP [dm3] 2R_13317289_SNP [dm6]	C	T	1.207e^-4	0.83	INTERGENIC
3R	18392570	3R_18392570_SNP [dm3] 3R_22566848_SNP [dm6]	T	A	1.209e^-4	0.83	INTERGENIC
3L	6756757	3L_6756757_SNP [dm3] 3L_6763657_SNP [dm6]	A	T	1.212e^-4	0.83	UPSTREAM CG32392 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	9340735	3L_9340735_SNP [dm3] 3L_9347635_SNP [dm6]	A	G	1.228e^-4	0.83	DOWNSTREAM PGRP-LC INTRON PGRP-LC
2L	4376064	2L_4376064_SNP [dm3] 2L_4376064_SNP [dm6]	T	A	1.236e^-4	0.83	INTRON Traf4	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	13163111	3L_13163111_SNP [dm3] 3L_13170011_SNP [dm6]	A	T	1.239e^-4	0.83	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
X	14768739	X_14768739_SNP [dm3] X_14874706_SNP [dm6]	G	A	1.241e^-4	0.83	DOWNSTREAM CG45065 & 1 other INTRON Flo2
3L	767727	3L_767727_SNP [dm3] 3L_767727_SNP [dm6]	C	T	1.259e^-4	0.83	INTERGENIC
3L	9301042	3L_9301042_SNP [dm3] 3L_9307942_SNP [dm6]	G	T	1.265e^-4	0.83	INTERGENIC
X	6693235	X_6693235_SNP [dm3] X_6799202_SNP [dm6]	C	T	1.273e^-4	0.83	INTRON C3G
3R	21013066	3R_21013066_SNP [dm3] 3R_25187344_SNP [dm6]	T	C	1.274e^-4	0.83	INTRON lobo & 1 other	TF binding site BDTNP1_TFBS_dl
2R	12581856	2R_12581856_SNP [dm3] 2R_16694351_SNP [dm6]	C	T	1.276e^-4	0.83	DOWNSTREAM CG5210 INTRON CG30463
3R	14494302	3R_14494302_SNP [dm3] 3R_18668580_SNP [dm6]	G	A	1.290e^-4	0.83	UPSTREAM CG7702 DOWNSTREAM CG31231 INTRON CG31229 EXON CR45028
3R	16596148	3R_16596148_SNP [dm3] 3R_20770426_SNP [dm6]	G	T	1.293e^-4	0.83	DOWNSTREAM Takl1 INTRON Syp	TF binding site mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA
2L	9848693	2L_9848693_DEL [dm3] 2L_9848693_DEL [dm6]	TATGTTTGT	T	1.294e^-4	0.83	INTRON nAChRalpha6 EXON CR43766
3R	445203	3R_445203_DEL [dm3] 3R_4619481_DEL [dm6]	AA	A	1.298e^-4	0.83	UTR_5_PRIME 5-HT2A INTRON 5-HT2A
3R	14138344	3R_14138344_SNP [dm3] 3R_18312622_SNP [dm6]	C	T	1.312e^-4	0.83	UPSTREAM PKD INTRON PKD	TF binding site mE1_TFBS_HSA
3R	15759517	3R_15759517_SNP [dm3] 3R_19933795_SNP [dm6]	G	A	1.315e^-4	0.83	SYNONYMOUS_CODING mira INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26800542	3R_26800542_SNP [dm3] 3R_30974820_SNP [dm6]	A	C	1.315e^-4	0.83	INTRON 5-HT7
2L	3608095	2L_3608095_SNP [dm3] 2L_3608095_SNP [dm6]	T	G	1.330e^-4	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6933240	3L_6933240_SNP [dm3] 3L_6940140_SNP [dm6]	T	C	1.337e^-4	0.83	UPSTREAM CR45412 INTERGENIC
X	4397111	X_4397111_SNP [dm3] X_4503078_SNP [dm6]	T	C	1.342e^-4	0.83	INTRON CR32773	TF binding site mE1_TFBS_HSA
3R	22544778	3R_22544778_SNP [dm3] 3R_26719056_SNP [dm6]	G	A	1.344e^-4	0.83	SYNONYMOUS_CODING CG5484 DOWNSTREAM CG6420	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6757158	3L_6757158_SNP [dm3] 3L_6764058_SNP [dm6]	A	G	1.346e^-4	0.83	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA
X	21306620	X_21306620_SNP [dm3] X_21435593_SNP [dm6]	T	C	1.351e^-4	0.83	SPLICE_SITE_REGION CG42343 INTRON CG42343	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11145540	2L_11145540_SNP [dm3] 2L_11145540_SNP [dm6]	C	T	1.379e^-4	0.83	UPSTREAM CG31867 INTRON Gyc32E
3L	5966593	3L_5966593_SNP [dm3] 3L_5973493_SNP [dm6]	T	C	1.392e^-4	0.83	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2R	11868189	2R_11868189_SNP [dm3] 2R_15980684_SNP [dm6]	C	T	1.405e^-4	0.83	SYNONYMOUS_CODING Strn-Mlck
2L	3291080	2L_3291080_SNP [dm3] 2L_3291080_SNP [dm6]	T	C	1.413e^-4	0.83	DOWNSTREAM CG9664 INTERGENIC	TF binding site mE1_TFBS_bab1
3R	14615206	3R_14615206_SNP [dm3] 3R_18789484_SNP [dm6]	C	T	1.436e^-4	0.83	INTRON CG7720	TF binding site mE1_TFBS_inv
2R	19706514	2R_19706514_SNP [dm3] 2R_23818991_SNP [dm6]	C	G	1.439e^-4	0.83	UPSTREAM CG4797 INTERGENIC	TF binding site mE1_TFBS_kn
2R	9208823	2R_9208823_SNP [dm3] 2R_13321318_SNP [dm6]	C	T	1.448e^-4	0.83	INTERGENIC
3R	13647767	3R_13647767_SNP [dm3] 3R_17822045_SNP [dm6]	T	A	1.457e^-4	0.83	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	10535797	3L_10535797_SNP [dm3] 3L_10542697_SNP [dm6]	A	G	1.459e^-4	0.83	INTRON A2bp1
3R	21404434	3R_21404434_DEL [dm3] 3R_25578712_DEL [dm6]	GG	G	1.461e^-4	0.83	INTRON msi	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	6873079	2R_6873079_SNP [dm3] 2R_10985574_SNP [dm6]	C	T	1.462e^-4	0.83	INTRON luna
3R	13846938	3R_13846938_SNP [dm3] 3R_18021216_SNP [dm6]	A	T	1.474e^-4	0.83	UPSTREAM CG7785 DOWNSTREAM DNaseII INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
X	9105089	X_9105089_SNP [dm3] X_9211056_SNP [dm6]	C	T	1.496e^-4	0.83	UPSTREAM CG12119 INTERGENIC
3R	10577339	3R_10577339_SNP [dm3] 3R_14751617_SNP [dm6]	C	T	1.499e^-4	0.83	UPSTREAM smp-30 DOWNSTREAM CG7362 INTRON jvl
3R	17245547	3R_17245547_SNP [dm3] 3R_21419825_SNP [dm6]	C	A	1.530e^-4	0.83	INTRON lbl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9654022	2L_9654022_SNP [dm3] 2L_9654022_SNP [dm6]	T	C	1.536e^-4	0.83	INTRON Apoltp
2L	16921730	2L_16921730_SNP [dm3] 2L_16921730_SNP [dm6]	C	T	1.538e^-4	0.83	INTERGENIC
3R	18392526	3R_18392526_SNP [dm3] 3R_22566804_SNP [dm6]	A	T	1.541e^-4	0.83	INTERGENIC
3R	7822070	3R_7822070_SNP [dm3] 3R_11996348_SNP [dm6]	T	A	1.546e^-4	0.83	INTRON Tk
2L	17782703	2L_17782703_SNP [dm3] 2L_17782703_SNP [dm6]	T	C	1.548e^-4	0.83	INTERGENIC
2L	3514519	2L_3514519_SNP [dm3] 2L_3514519_SNP [dm6]	C	A	1.549e^-4	0.83	UPSTREAM CG17593 INTRON CG33123	TF binding site mE1_TFBS_cad
3R	6724108	3R_6724108_SNP [dm3] 3R_10898386_SNP [dm6]	C	T	1.553e^-4	0.83	EXON CR45578
X	12899980	X_12899980_SNP [dm3] X_13005947_SNP [dm6]	G	C	1.554e^-4	0.83	INTRON rad
3L	767379	3L_767379_SNP [dm3] 3L_767379_SNP [dm6]	A	C	1.556e^-4	0.83	INTERGENIC
3R	24131539	3R_24131539_SNP [dm3] 3R_28305817_SNP [dm6]	A	G	1.561e^-4	0.83	INTERGENIC
X	8716469	X_8716469_DEL [dm3] X_8822436_DEL [dm6]	AT	A	1.563e^-4	0.83	INTERGENIC
2L	1024353	2L_1024353_SNP [dm3] 2L_1024353_SNP [dm6]	T	A	1.567e^-4	0.83	INTRON IA-2
2L	18815330	2L_18815330_SNP [dm3] 2L_18815330_SNP [dm6]	A	G	1.569e^-4	0.83	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	6181880	2R_6181880_SNP [dm3] 2R_10294375_SNP [dm6]	C	G	1.577e^-4	0.83	INTRON CAP	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24767364	3R_24767364_SNP [dm3] 3R_28941642_SNP [dm6]	C	T	1.577e^-4	0.83	INTRON CG14521
2L	9654026	2L_9654026_SNP [dm3] 2L_9654026_SNP [dm6]	G	T	1.581e^-4	0.83	INTRON Apoltp
2R	14699927	2R_14699927_SNP [dm3] 2R_18812422_SNP [dm6]	C	T	1.583e^-4	0.83	UPSTREAM CG15096 INTRON CG15096	TF binding site mE1_TFBS_HSA
2R	9433863	2R_9433863_SNP [dm3] 2R_13546358_SNP [dm6]	C	T	1.594e^-4	0.83	UPSTREAM CG6145 INTRON CG6145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
X	18802527	X_18802527_SNP [dm3] X_18908494_SNP [dm6]	A	G	1.595e^-4	0.83	INTRON CG7378
2R	9249407	2R_9249407_SNP [dm3] 2R_13361902_SNP [dm6]	G	T	1.598e^-4	0.83	EXON CR45312
2L	12855278	2L_12855278_SNP [dm3] 2L_12855278_SNP [dm6]	A	T	1.600e^-4	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	4247527	2L_4247527_SNP [dm3] 2L_4247527_SNP [dm6]	T	C	1.603e^-4	0.83	INTRON CR44059
3L	6757273	3L_6757273_SNP [dm3] 3L_6764173_SNP [dm6]	G	A	1.623e^-4	0.83	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	9255523	2R_9255523_SNP [dm3] 2R_13368018_SNP [dm6]	T	C	1.632e^-4	0.83	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	14120991	3L_14120991_SNP [dm3] 3L_14127891_SNP [dm6]	A	C	1.643e^-4	0.83	INTRON Sox21b
3R	14842026	3R_14842026_SNP [dm3] 3R_19016304_SNP [dm6]	C	T	1.650e^-4	0.83	SYNONYMOUS_CODING gukh INTRON gukh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	18749747	3L_18749747_INS [dm3] 3L_18756647_INS [dm6]	A	AGCAA	1.651e^-4	0.83	INTRON ftz-f1	TF binding site BDTNP1_TFBS_dl
2R	10306531	2R_10306531_DEL [dm3] 2R_14419026_DEL [dm6]	TCTAATTT	T	1.655e^-4	0.83	INTERGENIC
X	10134057	X_10134057_SNP [dm3] X_10240024_SNP [dm6]	A	G	1.657e^-4	0.83	INTRON Hk
3R	1230510	3R_1230510_SNP [dm3] 3R_5404788_SNP [dm6]	T	A	1.663e^-4	0.83	UPSTREAM CG2663 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13794746	2R_13794746_SNP [dm3] 2R_17907241_SNP [dm6]	A	T	1.665e^-4	0.83	INTRON Elk
3L	15733477	3L_15733477_SNP [dm3] 3L_15740377_SNP [dm6]	C	T	1.684e^-4	0.83	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	15046504	3R_15046504_SNP [dm3] 3R_19220782_SNP [dm6]	T	A	1.685e^-4	0.83	INTRON vib
3L	15899544	3L_15899544_SNP [dm3] 3L_15906444_SNP [dm6]	C	A	1.685e^-4	0.83	INTRON sff
2R	9825468	2R_9825468_INS [dm3] 2R_13937963_INS [dm6]	T	TC	1.687e^-4	0.83	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	15888691	3L_15888691_DEL [dm3] 3L_15895591_DEL [dm6]	TC	T	1.708e^-4	0.83	INTRON pHCl
3L	4994715	3L_4994715_SNP [dm3] 3L_4994715_SNP [dm6]	C	T	1.710e^-4	0.83	SYNONYMOUS_CODING CG32232 INTRON Con	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
3L	6757057	3L_6757057_SNP [dm3] 3L_6763957_SNP [dm6]	G	T	1.712e^-4	0.83	UPSTREAM CG32392 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	13101002	3R_13101002_SNP [dm3] 3R_17275280_SNP [dm6]	T	A	1.717e^-4	0.83	INTERGENIC
3R	5126609	3R_5126609_SNP [dm3] 3R_9300887_SNP [dm6]	T	C	1.718e^-4	0.83	INTRON CG8861
2R	12366382	2R_12366382_SNP [dm3] 2R_16478877_SNP [dm6]	T	C	1.721e^-4	0.83	INTERGENIC
2R	10509501	2R_10509501_INS [dm3] 2R_14621996_INS [dm6]	G	GAG	1.739e^-4	0.83	UPSTREAM snoRNA:Me28S-C3227a & 4 others DOWNSTREAM snoRNA:Me18S-C1366 EXON Uhg5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
X	19771161	X_19771161_SNP [dm3] X_19877128_SNP [dm6]	T	C	1.744e^-4	0.83	INTRON Hers	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	13965363	3R_13965363_INS [dm3] 3R_18139641_INS [dm6]	A	AAGACATA	1.744e^-4	0.83	INTERGENIC
3L	11343182	3L_11343182_DEL [dm3] 3L_11350082_DEL [dm6]	CAC	C	1.744e^-4	0.83	UPSTREAM CR45251 INTERGENIC
2R	10715588	2R_10715588_SNP [dm3] 2R_14828083_SNP [dm6]	A	T	1.751e^-4	0.83	INTERGENIC
3L	7785688	3L_7785688_SNP [dm3] 3L_7792588_SNP [dm6]	C	A	1.755e^-4	0.83	INTRON CG32369
X	3520764	X_3520764_SNP [dm3] X_3626731_SNP [dm6]	A	C	1.762e^-4	0.83	INTRON AstA-R1
2R	6383935	2R_6383935_SNP [dm3] 2R_10496430_SNP [dm6]	T	C	1.767e^-4	0.83	UTR_3_PRIME lola INTRON lola
2R	7202110	2R_7202110_SNP [dm3] 2R_11314605_SNP [dm6]	G	A	1.775e^-4	0.83	NON_SYNONYMOUS_CODING nompA INTRON nompA	TF binding site mE1_TFBS_cad
2R	7202354	2R_7202354_SNP [dm3] 2R_11314849_SNP [dm6]	A	T	1.775e^-4	0.83	SYNONYMOUS_CODING nompA	TF binding site mE1_TFBS_cad
3L	766468	3L_766468_SNP [dm3] 3L_766468_SNP [dm6]	A	G	1.778e^-4	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	18392453	3R_18392453_INS [dm3] 3R_22566731_INS [dm6]	A	AGTAT	1.784e^-4	0.83	INTERGENIC
3L	8561801	3L_8561801_SNP [dm3] 3L_8568701_SNP [dm6]	A	G	1.785e^-4	0.83	SYNONYMOUS_CODING rhea UTR_3_PRIME rhea UPSTREAM CR43910	TF binding site mE1_TFBS_cad
2R	6002623	2R_6002623_SNP [dm3] 2R_10115118_SNP [dm6]	C	A	1.787e^-4	0.83	INTRON Pfk
2L	12395752	2L_12395752_SNP [dm3] 2L_12395752_SNP [dm6]	T	C	1.788e^-4	0.83	INTRON bru-2
2L	909041	2L_909041_SNP [dm3] 2L_909041_SNP [dm6]	G	T	1.790e^-4	0.83	INTERGENIC
3R	23211028	3R_23211028_DEL [dm3] 3R_27385306_DEL [dm6]	TCTGGTTTT	T	1.793e^-4	0.83	INTRON side
2L	12695790	2L_12695790_SNP [dm3] 2L_12695790_SNP [dm6]	A	C	1.799e^-4	0.83	UPSTREAM PICK1 & 1 other DOWNSTREAM CG5781 INTRON PICK1
3R	24362703	3R_24362703_SNP [dm3] 3R_28536981_SNP [dm6]	G	C	1.800e^-4	0.83	INTRON Ppn
2R	10274057	2R_10274057_SNP [dm3] 2R_14386552_SNP [dm6]	C	T	1.817e^-4	0.83	INTERGENIC
2R	12373264	2R_12373264_SNP [dm3] 2R_16485759_SNP [dm6]	T	C	1.825e^-4	0.83	UPSTREAM CG15712 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	1024368	2L_1024368_INS [dm3] 2L_1024368_INS [dm6]	A	AATTCATGGA	1.850e^-4	0.83	INTRON IA-2
2R	6587027	2R_6587027_SNP [dm3] 2R_10699522_SNP [dm6]	A	C	1.852e^-4	0.83	INTRON stan	TF binding site mE1_TFBS_HSA
3L	4354852	3L_4354852_SNP [dm3] 3L_4354852_SNP [dm6]	C	T	1.855e^-4	0.83	INTRON Cip4
2R	16920323	2R_16920323_SNP [dm3] 2R_21032818_SNP [dm6]	A	G	1.857e^-4	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	11343206	3L_11343206_SNP [dm3] 3L_11350106_SNP [dm6]	A	G	1.866e^-4	0.83	UPSTREAM CR45251 INTERGENIC
3R	24749622	3R_24749622_SNP [dm3] 3R_28923900_SNP [dm6]	G	A	1.867e^-4	0.83	INTRON CG11828
X	10412109	X_10412109_SNP [dm3] X_10518076_SNP [dm6]	A	T	1.870e^-4	0.83	INTRON spri	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	21306119	X_21306119_SNP [dm3] X_21435092_SNP [dm6]	A	C	1.888e^-4	0.83	INTRON CG42343	TF binding site BDTNP1_TFBS_twi
X	6930209	X_6930209_INS [dm3] X_7036176_INS [dm6]	T	TT	1.890e^-4	0.83	INTRON CG12541	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	2704840	3L_2704840_SNP [dm3] 3L_2704840_SNP [dm6]	T	C	1.898e^-4	0.83	INTRON Fife
3R	25946483	3R_25946483_SNP [dm3] 3R_30120761_SNP [dm6]	T	A	1.904e^-4	0.83	UTR_3_PRIME sima	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	19256668	3R_19256668_SNP [dm3] 3R_23430946_SNP [dm6]	A	T	1.906e^-4	0.83	UTR_5_PRIME CG4374 INTRON CG4374
3R	14840843	3R_14840843_SNP [dm3] 3R_19015121_SNP [dm6]	T	C	1.910e^-4	0.83	INTRON gukh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	21306709	X_21306709_SNP [dm3] X_21435682_SNP [dm6]	G	A	1.910e^-4	0.83	INTRON CG42343	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12337941	2R_12337941_SNP [dm3] 2R_16450436_SNP [dm6]	C	G	1.914e^-4	0.83	INTERGENIC
3R	20711912	3R_20711912_SNP [dm3] 3R_24886190_SNP [dm6]	G	T	1.917e^-4	0.83	INTRON CG31121
3L	15899532	3L_15899532_SNP [dm3] 3L_15906432_SNP [dm6]	G	T	1.917e^-4	0.83	INTRON sff
2L	3153814	2L_3153814_SNP [dm3] 2L_3153814_SNP [dm6]	G	T	1.918e^-4	0.83	INTRON Mad
3L	4199352	3L_4199352_SNP [dm3] 3L_4199352_SNP [dm6]	A	G	1.920e^-4	0.83	SYNONYMOUS_CODING CG43367
2L	4823789	2L_4823789_SNP [dm3] 2L_4823789_SNP [dm6]	G	A	1.925e^-4	0.83	INTRON CG15628	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3R	25557449	3R_25557449_SNP [dm3] 3R_29731727_SNP [dm6]	T	C	1.927e^-4	0.83	SYNONYMOUS_CODING Kul UTR_3_PRIME Kul	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19362354	3R_19362354_SNP [dm3] 3R_23536632_SNP [dm6]	G	C	1.931e^-4	0.83	NON_SYNONYMOUS_CODING CG16732 DOWNSTREAM CG10168
3L	11406610	3L_11406610_INS [dm3] 3L_11413510_INS [dm6]	C	CGAGTC	1.933e^-4	0.83	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	25569208	3R_25569208_SNP [dm3] 3R_29743486_SNP [dm6]	C	T	1.935e^-4	0.83	SYNONYMOUS_CODING CG7609
2R	12959270	2R_12959270_SNP [dm3] 2R_17071765_SNP [dm6]	C	T	1.938e^-4	0.83	SYNONYMOUS_CODING CG30460	TF binding site mE1_TFBS_cad
X	19163709	X_19163709_SNP [dm3] X_19269676_SNP [dm6]	A	T	1.948e^-4	0.83	UPSTREAM CG8010 INTRON Vav	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
2L	3520391	2L_3520391_SNP [dm3] 2L_3520391_SNP [dm6]	T	A	1.949e^-4	0.83	NON_SYNONYMOUS_CODING CG8851 UPSTREAM CG3213	TF binding site mE1_TFBS_cad
2R	19616823	2R_19616823_SNP [dm3] 2R_23729300_SNP [dm6]	G	A	1.950e^-4	0.83	INTRON Sesn
2R	9258685	2R_9258685_SNP [dm3] 2R_13371180_SNP [dm6]	A	G	1.954e^-4	0.83	INTERGENIC
X	19619003	X_19619003_SNP [dm3] X_19724970_SNP [dm6]	T	G	1.955e^-4	0.83	SYNONYMOUS_CODING CG12531	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5090635	2R_5090635_SNP [dm3] 2R_9203130_SNP [dm6]	G	C	1.958e^-4	0.83	INTERGENIC
2L	12363230	2L_12363230_DEL [dm3] 2L_12363230_DEL [dm6]	TATTGTGC	T	1.963e^-4	0.83	INTRON bru-2
3L	9301041	3L_9301041_SNP [dm3] 3L_9307941_SNP [dm6]	G	C	1.964e^-4	0.83	INTERGENIC
2R	6108079	2R_6108079_SNP [dm3] 2R_10220574_SNP [dm6]	T	C	1.964e^-4	0.83	INTRON Hr46 & 1 other	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	14138340	3R_14138340_SNP [dm3] 3R_18312618_SNP [dm6]	T	C	1.967e^-4	0.83	UPSTREAM PKD INTRON PKD	TF binding site mE1_TFBS_HSA
X	16436205	X_16436205_SNP [dm3] X_16542172_SNP [dm6]	C	G	1.982e^-4	0.83	UTR_3_PRIME CG9902
3L	1901306	3L_1901306_SNP [dm3] 3L_1901306_SNP [dm6]	T	C	1.985e^-4	0.83	UTR_3_PRIME CG1887 INTRON CG1887	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA
3R	13965365	3R_13965365_SNP [dm3] 3R_18139643_SNP [dm6]	C	T	1.988e^-4	0.83	INTERGENIC
3L	4550019	3L_4550019_SNP [dm3] 3L_4550019_SNP [dm6]	A	C	2.000e^-4	0.83	UPSTREAM CG11357 INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2R	6178690	2R_6178690_SNP [dm3] 2R_10291185_SNP [dm6]	T	A	2.004e^-4	0.83	INTRON CAP
3R	17721757	3R_17721757_SNP [dm3] 3R_21896035_SNP [dm6]	C	A	2.007e^-4	0.83	INTRON CG6678
3R	18560553	3R_18560553_SNP [dm3] 3R_22734831_SNP [dm6]	G	A	2.027e^-4	0.83	SYNONYMOUS_CODING Dcr-1 UPSTREAM Takl2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14843269	3R_14843269_SNP [dm3] 3R_19017547_SNP [dm6]	T	G	2.029e^-4	0.83	NON_SYNONYMOUS_CODING gukh INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3480797	3L_3480797_SNP [dm3] 3L_3480797_SNP [dm6]	T	A	2.032e^-4	0.83	INTRON CG42324
3R	6925046	3R_6925046_SNP [dm3] 3R_11099324_SNP [dm6]	A	T	2.039e^-4	0.83	INTERGENIC
3L	8792498	3L_8792498_SNP [dm3] 3L_8799398_SNP [dm6]	C	G	2.051e^-4	0.83	SYNONYMOUS_CODING CG13310 DOWNSTREAM Fhos
3R	2868745	3R_2868745_SNP [dm3] 3R_7043023_SNP [dm6]	A	G	2.053e^-4	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	6757127	3L_6757127_SNP [dm3] 3L_6764027_SNP [dm6]	T	C	2.056e^-4	0.83	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA
2R	20185274	2R_20185274_SNP [dm3] 2R_24297751_SNP [dm6]	T	C	2.063e^-4	0.83	SYNONYMOUS_CODING CG3394	TF binding site mE1_TFBS_chinmo
X	9497121	X_9497121_SNP [dm3] X_9603088_SNP [dm6]	G	C	2.064e^-4	0.83	NON_SYNONYMOUS_CODING Gga	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	13872709	X_13872709_SNP [dm3] X_13978676_SNP [dm6]	G	A	2.065e^-4	0.83	INTRON mamo
2R	19546698	2R_19546698_SNP [dm3] 2R_23659175_SNP [dm6]	C	T	2.073e^-4	0.83	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	6180958	2R_6180958_SNP [dm3] 2R_10293453_SNP [dm6]	A	T	2.073e^-4	0.83	INTRON CAP
2R	17139416	2R_17139416_SNP [dm3] 2R_21251911_SNP [dm6]	G	A	2.076e^-4	0.83	UPSTREAM ASPP INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_Trl
2L	14192640	2L_14192640_SNP [dm3] 2L_14192640_SNP [dm6]	T	C	2.079e^-4	0.83	INTRON Dyrk2
2L	976700	2L_976700_SNP [dm3] 2L_976700_SNP [dm6]	G	A	2.084e^-4	0.83	INTERGENIC
2L	909059	2L_909059_SNP [dm3] 2L_909059_SNP [dm6]	T	C	2.085e^-4	0.83	INTERGENIC
X	8716329	X_8716329_SNP [dm3] X_8822296_SNP [dm6]	G	A	2.086e^-4	0.83	INTERGENIC
3L	8569278	3L_8569278_SNP [dm3] 3L_8576178_SNP [dm6]	A	G	2.089e^-4	0.83	UPSTREAM CG43078 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
3R	24750102	3R_24750102_SNP [dm3] 3R_28924380_SNP [dm6]	C	G	2.096e^-4	0.83	NON_SYNONYMOUS_CODING CG11828 DOWNSTREAM CG14521
3R	19209195	3R_19209195_SNP [dm3] 3R_23383473_SNP [dm6]	A	G	2.099e^-4	0.83	UPSTREAM CG4393 INTRON CG4393
3L	11121264	3L_11121264_SNP [dm3] 3L_11128164_SNP [dm6]	C	G	2.099e^-4	0.83	INTRON CG42575
3R	26878142	3R_26878142_SNP [dm3] 3R_31052420_SNP [dm6]	T	A	2.102e^-4	0.83	UTR_3_PRIME Aph-4 DOWNSTREAM l_3_03670	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	18392159	3R_18392159_SNP [dm3] 3R_22566437_SNP [dm6]	G	T	2.109e^-4	0.83	INTERGENIC
3L	4413805	3L_4413805_SNP [dm3] 3L_4413805_SNP [dm6]	G	T	2.109e^-4	0.83	UPSTREAM DOR INTRON DOR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	6106606	2R_6106606_DEL [dm3] 2R_10219101_DEL [dm6]	TTGT	T	2.116e^-4	0.83	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	4550200	3L_4550200_SNP [dm3] 3L_4550200_SNP [dm6]	A	T	2.119e^-4	0.83	UPSTREAM CG11357 INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3970864	2L_3970864_SNP [dm3] 2L_3970864_SNP [dm6]	C	G	2.125e^-4	0.83	INTRON fred
3L	6757811	3L_6757811_SNP [dm3] 3L_6764711_SNP [dm6]	A	T	2.138e^-4	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
3R	11827769	3R_11827769_SNP [dm3] 3R_16002047_SNP [dm6]	A	G	2.149e^-4	0.83	INTRON srp	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	9112677	2L_9112677_SNP [dm3] 2L_9112677_SNP [dm6]	T	C	2.162e^-4	0.83	INTRON Or30a
3R	26864590	3R_26864590_SNP [dm3] 3R_31038868_SNP [dm6]	C	G	2.167e^-4	0.83	UPSTREAM CanA1 INTERGENIC
2R	16971053	2R_16971053_SNP [dm3] 2R_21083548_SNP [dm6]	A	G	2.180e^-4	0.83	UPSTREAM Treh INTRON Treh
3L	10307218	3L_10307218_SNP [dm3] 3L_10314118_SNP [dm6]	T	A	2.203e^-4	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11121206	3L_11121206_DEL [dm3] 3L_11128106_DEL [dm6]	AA	A	2.214e^-4	0.83	INTRON CG42575
3R	24365930	3R_24365930_SNP [dm3] 3R_28540208_SNP [dm6]	T	A	2.220e^-4	0.83	UTR_5_PRIME Ppn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7281131	3L_7281131_SNP [dm3] 3L_7288031_SNP [dm6]	A	G	2.231e^-4	0.83	INTRON unc-13-4A
2L	13270546	2L_13270546_SNP [dm3] 2L_13270546_SNP [dm6]	A	C	2.233e^-4	0.83	INTRON CG44085
2L	7488723	2L_7488723_SNP [dm3] 2L_7488723_SNP [dm6]	G	A	2.234e^-4	0.83	INTRON Ziz
3L	6757078	3L_6757078_SNP [dm3] 3L_6763978_SNP [dm6]	G	C	2.235e^-4	0.83	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA
2R	9262078	2R_9262078_SNP [dm3] 2R_13374573_SNP [dm6]	C	A	2.238e^-4	0.83	INTERGENIC
3R	9951635	3R_9951635_SNP [dm3] 3R_14125913_SNP [dm6]	A	G	2.241e^-4	0.83	UTR_5_PRIME RpII140 UPSTREAM 140up	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21305044	X_21305044_SNP [dm3] X_21434017_SNP [dm6]	T	A	2.242e^-4	0.83	INTRON CG42343
3R	460992	3R_460992_SNP [dm3] 3R_4635270_SNP [dm6]	C	T	2.249e^-4	0.83	EXON CR45673	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24364663	3R_24364663_SNP [dm3] 3R_28538941_SNP [dm6]	C	T	2.253e^-4	0.83	INTRON Ppn
2L	16243649	2L_16243649_SNP [dm3] 2L_16243649_SNP [dm6]	T	A	2.253e^-4	0.83	NON_SYNONYMOUS_CODING CG42818
2L	6812008	2L_6812008_SNP [dm3] 2L_6812008_SNP [dm6]	T	C	2.254e^-4	0.83	UPSTREAM CR44081 INTERGENIC
3R	23128679	3R_23128679_SNP [dm3] 3R_27302957_SNP [dm6]	T	C	2.256e^-4	0.83	SPLICE_SITE_REGION CG3339 INTRON CG3339
2R	14204551	2R_14204551_SNP [dm3] 2R_18317046_SNP [dm6]	G	C	2.257e^-4	0.83	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9846012	2L_9846012_SNP [dm3] 2L_9846012_SNP [dm6]	T	C	2.264e^-4	0.83	INTRON nAChRalpha6
2R	795333	2R_795333_SNP [dm3] 2R_4907828_SNP [dm6]	C	A	2.267e^-4	0.83	UPSTREAM CG44102 INTERGENIC
2R	9209376	2R_9209376_DEL [dm3] 2R_13321871_DEL [dm6]	GTGG	G	2.269e^-4	0.83	INTERGENIC
2L	9547090	2L_9547090_SNP [dm3] 2L_9547090_SNP [dm6]	C	T	2.269e^-4	0.83	SYNONYMOUS_CODING CG13114 DOWNSTREAM jp
3L	18803454	3L_18803454_SNP [dm3] 3L_18810354_SNP [dm6]	A	T	2.270e^-4	0.83	INTRON CG14073	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn mE1_TFBS_zfh1
X	18802519	X_18802519_SNP [dm3] X_18908486_SNP [dm6]	C	T	2.271e^-4	0.83	INTRON CG7378
2L	16414033	2L_16414033_SNP [dm3] 2L_16414033_SNP [dm6]	A	G	2.272e^-4	0.83	INTRON CG5888	TF binding site BDTNP1_TFBS_twi
2L	6771403	2L_6771403_SNP [dm3] 2L_6771403_SNP [dm6]	A	T	2.286e^-4	0.83	UPSTREAM CG11321 INTRON CG11321
3R	7822083	3R_7822083_SNP [dm3] 3R_11996361_SNP [dm6]	G	C	2.292e^-4	0.83	INTRON Tk
X	14739408	X_14739408_SNP [dm3] X_14845375_SNP [dm6]	C	G	2.294e^-4	0.83	UPSTREAM CG12539 INTRON Flo2
2R	8517281	2R_8517281_SNP [dm3] 2R_12629776_SNP [dm6]	C	T	2.295e^-4	0.83	SYNONYMOUS_CODING muskelin
3R	6637635	3R_6637635_SNP [dm3] 3R_10811913_SNP [dm6]	C	T	2.300e^-4	0.83	NON_SYNONYMOUS_CODING CG14693 UTR_3_PRIME CG14693
2R	12366380	2R_12366380_SNP [dm3] 2R_16478875_SNP [dm6]	C	A	2.317e^-4	0.83	INTERGENIC
3R	1787857	3R_1787857_INS [dm3] 3R_5962135_INS [dm6]	G	GC	2.323e^-4	0.83	INTERGENIC
3L	20408571	3L_20408571_SNP [dm3] 3L_20415471_SNP [dm6]	T	C	2.327e^-4	0.83	INTRON zye
X	20241832	X_20241832_DEL [dm3] X_20370805_DEL [dm6]	CACC	GG	2.348e^-4	0.83	INTERGENIC
3R	24581128	3R_24581128_SNP [dm3] 3R_28755406_SNP [dm6]	T	C	2.351e^-4	0.83	DOWNSTREAM CG9997 INTERGENIC
2L	3163979	2L_3163979_SNP [dm3] 2L_3163979_SNP [dm6]	T	C	2.357e^-4	0.83	SYNONYMOUS_CODING Hydr2 UTR_5_PRIME Hydr2 DOWNSTREAM CR31953	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	10828007	2L_10828007_SNP [dm3] 2L_10828007_SNP [dm6]	T	G	2.362e^-4	0.83	INTRON Nos
X	18802495	X_18802495_SNP [dm3] X_18908462_SNP [dm6]	G	A	2.364e^-4	0.83	INTRON CG7378
3L	6757285	3L_6757285_SNP [dm3] 3L_6764185_SNP [dm6]	G	C	2.366e^-4	0.83	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	3222467	2L_3222467_SNP [dm3] 2L_3222467_SNP [dm6]	A	T	2.367e^-4	0.83	INTERGENIC
3R	6916179	3R_6916179_SNP [dm3] 3R_11090457_SNP [dm6]	C	T	2.372e^-4	0.83	INTERGENIC
3R	25204727	3R_25204727_SNP [dm3] 3R_29379005_SNP [dm6]	T	C	2.380e^-4	0.83	INTRON Ptp99A
2R	16269923	2R_16269923_SNP [dm3] 2R_20382418_SNP [dm6]	G	T	2.381e^-4	0.83	INTERGENIC
3R	26009326	3R_26009326_SNP [dm3] 3R_30183604_SNP [dm6]	G	C	2.383e^-4	0.83	DOWNSTREAM CR44262 INTERGENIC
3L	15868591	3L_15868591_SNP [dm3] 3L_15875491_SNP [dm6]	C	T	2.383e^-4	0.83	DOWNSTREAM CR44051 INTRON pHCl
X	21305062	X_21305062_SNP [dm3] X_21434035_SNP [dm6]	C	T	2.385e^-4	0.83	INTRON CG42343
2L	12855271	2L_12855271_MNP [dm3] 2L_12855271_MNP [dm6]	TAGATA	GCTTAT	2.386e^-4	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	9833710	2L_9833710_SNP [dm3] 2L_9833710_SNP [dm6]	C	T	2.395e^-4	0.83	INTRON nAChRalpha6
3L	11347569	3L_11347569_SNP [dm3] 3L_11354469_SNP [dm6]	A	G	2.395e^-4	0.83	INTERGENIC
3R	13443097	3R_13443097_SNP [dm3] 3R_17617375_SNP [dm6]	A	G	2.400e^-4	0.83	UPSTREAM tRNA:V3b:90BC DOWNSTREAM tRNA:P:90Ca & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_zfh1
X	14386797	X_14386797_SNP [dm3] X_14492764_SNP [dm6]	T	C	2.408e^-4	0.83	INTERGENIC
2R	14216659	2R_14216659_SNP [dm3] 2R_18329154_SNP [dm6]	C	A	2.409e^-4	0.83	INTRON sbb
3L	4147676	3L_4147676_SNP [dm3] 3L_4147676_SNP [dm6]	C	T	2.416e^-4	0.83	INTERGENIC
3L	4309368	3L_4309368_SNP [dm3] 3L_4309368_SNP [dm6]	G	C	2.417e^-4	0.83	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2835279	3L_2835279_SNP [dm3] 3L_2835279_SNP [dm6]	A	T	2.419e^-4	0.83	INTRON CG43444
2L	18938020	2L_18938020_SNP [dm3] 2L_18938020_SNP [dm6]	C	T	2.425e^-4	0.83	INTRON ssp3
2L	10677492	2L_10677492_SNP [dm3] 2L_10677492_SNP [dm6]	A	C	2.429e^-4	0.83	UPSTREAM CG17104 INTRON CG17104
X	7622951	X_7622951_SNP [dm3] X_7728918_SNP [dm6]	G	A	2.431e^-4	0.83	UTR_5_PRIME CG12155 UPSTREAM NELF-B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	7613989	2R_7613989_SNP [dm3] 2R_11726484_SNP [dm6]	G	T	2.432e^-4	0.83	DOWNSTREAM pyr INTERGENIC	TF binding site mE1_TFBS_cad
X	18802584	X_18802584_INS [dm3] X_18908551_INS [dm6]	GA	ATG	2.441e^-4	0.83	INTRON CG7378
2L	16213969	2L_16213969_SNP [dm3] 2L_16213969_SNP [dm6]	A	G	2.444e^-4	0.83	DOWNSTREAM CG31819 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11472317	3L_11472317_SNP [dm3] 3L_11479217_SNP [dm6]	G	A	2.447e^-4	0.83	INTERGENIC
X	9096643	X_9096643_SNP [dm3] X_9202610_SNP [dm6]	T	A	2.451e^-4	0.83	UPSTREAM su_r_ INTERGENIC
3R	24541304	3R_24541304_SNP [dm3] 3R_28715582_SNP [dm6]	G	C	2.452e^-4	0.83	INTRON htt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	766514	3L_766514_SNP [dm3] 3L_766514_SNP [dm6]	C	A	2.459e^-4	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15659585	X_15659585_SNP [dm3] X_15765552_SNP [dm6]	C	T	2.460e^-4	0.83	SYNONYMOUS_CODING CG8952 INTRON CG17209
3R	12849379	3R_12849379_SNP [dm3] 3R_17023657_SNP [dm6]	A	G	2.469e^-4	0.83	INTRON Pxd
3L	7854478	3L_7854478_SNP [dm3] 3L_7861378_SNP [dm6]	T	C	2.469e^-4	0.83	INTRON Pdp1
3R	19204280	3R_19204280_SNP [dm3] 3R_23378558_SNP [dm6]	A	T	2.470e^-4	0.83	NON_SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_sens
X	13347692	X_13347692_SNP [dm3] X_13453659_SNP [dm6]	T	C	2.477e^-4	0.83	INTRON Neto
2R	14170753	2R_14170753_SNP [dm3] 2R_18283248_SNP [dm6]	A	C	2.481e^-4	0.83	SPLICE_SITE_REGION sbb INTRON sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	976838	2L_976838_SNP [dm3] 2L_976838_SNP [dm6]	A	G	2.489e^-4	0.83	INTERGENIC
3R	20331888	3R_20331888_SNP [dm3] 3R_24506166_SNP [dm6]	G	C	2.490e^-4	0.83	INTERGENIC	transposable element FlyBase
2R	19616826	2R_19616826_SNP [dm3] 2R_23729303_SNP [dm6]	C	G	2.490e^-4	0.83	INTRON Sesn
3R	411721	3R_411721_SNP [dm3] 3R_4585999_SNP [dm6]	A	G	2.491e^-4	0.83	INTRON CR45558	transposable element FlyBase
2L	6774139	2L_6774139_SNP [dm3] 2L_6774139_SNP [dm6]	G	A	2.491e^-4	0.83	UTR_5_PRIME CG17378
X	19296955	X_19296955_SNP [dm3] X_19402922_SNP [dm6]	T	G	2.499e^-4	0.83	INTRON kek5
3L	4994616	3L_4994616_SNP [dm3] 3L_4994616_SNP [dm6]	G	C	2.504e^-4	0.83	SYNONYMOUS_CODING CG32232 INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	6577969	2L_6577969_SNP [dm3] 2L_6577969_SNP [dm6]	G	T	2.509e^-4	0.83	INTRON CG11319	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	12975243	3L_12975243_SNP [dm3] 3L_12982143_SNP [dm6]	G	T	2.516e^-4	0.83	INTERGENIC
2L	17782855	2L_17782855_SNP [dm3] 2L_17782855_SNP [dm6]	G	A	2.518e^-4	0.83	INTERGENIC
2L	9654015	2L_9654015_SNP [dm3] 2L_9654015_SNP [dm6]	T	A	2.523e^-4	0.83	INTRON Apoltp
2R	12337944	2R_12337944_SNP [dm3] 2R_16450439_SNP [dm6]	A	T	2.531e^-4	0.83	INTERGENIC
3R	15279681	3R_15279681_SNP [dm3] 3R_19453959_SNP [dm6]	C	T	2.533e^-4	0.83	INTRON CG31221
3L	7746089	3L_7746089_SNP [dm3] 3L_7752989_SNP [dm6]	G	A	2.539e^-4	0.83	INTRON CG32373
2R	10264751	2R_10264751_SNP [dm3] 2R_14377246_SNP [dm6]	G	C	2.541e^-4	0.83	UPSTREAM Dh44-R1 DOWNSTREAM CG30075 INTERGENIC
3L	6699675	3L_6699675_SNP [dm3] 3L_6706575_SNP [dm6]	G	T	2.542e^-4	0.83	INTRON CG8519
X	22180873	X_22180873_SNP [dm3] X_22779037_SNP [dm6]	C	T	2.546e^-4	0.83	INTRON CR44997	TF binding site BDTNP1_TFBS_twi
2L	14015016	2L_14015016_SNP [dm3] 2L_14015016_SNP [dm6]	A	C	2.564e^-4	0.83	INTRON bgm
3R	22604398	3R_22604398_SNP [dm3] 3R_26778676_SNP [dm6]	C	A	2.572e^-4	0.83	INTERGENIC
2L	3339014	2L_3339014_SNP [dm3] 2L_3339014_SNP [dm6]	A	G	2.572e^-4	0.83	INTRON E23	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
2R	9404444	2R_9404444_SNP [dm3] 2R_13516939_SNP [dm6]	A	T	2.573e^-4	0.83	SYNONYMOUS_CODING CG13330 UTR_3_PRIME Vmat	TF binding site mE1_TFBS_cad
2L	7634756	2L_7634756_SNP [dm3] 2L_7634756_SNP [dm6]	C	T	2.576e^-4	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19163537	X_19163537_SNP [dm3] X_19269504_SNP [dm6]	T	C	2.581e^-4	0.83	SYNONYMOUS_CODING Vav UPSTREAM CG8010	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	5517014	3L_5517014_SNP [dm3] 3L_5523914_SNP [dm6]	T	A	2.583e^-4	0.83	INTRON Lkr
2L	14015006	2L_14015006_SNP [dm3] 2L_14015006_SNP [dm6]	A	T	2.590e^-4	0.83	INTRON bgm
3L	7120455	3L_7120455_SNP [dm3] 3L_7127355_SNP [dm6]	T	A	2.594e^-4	0.83	DOWNSTREAM CG8629 INTRON BBS1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16376863	3R_16376863_SNP [dm3] 3R_20551141_SNP [dm6]	C	T	2.613e^-4	0.83	UPSTREAM Stat92E INTRON Stat92E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
3R	18504073	3R_18504073_SNP [dm3] 3R_22678351_SNP [dm6]	G	A	2.614e^-4	0.83	INTRON CG45058	TF binding site mE1_TFBS_cad
X	6285366	X_6285366_SNP [dm3] X_6391333_SNP [dm6]	G	A	2.620e^-4	0.83	INTERGENIC
2L	3521227	2L_3521227_SNP [dm3] 2L_3521227_SNP [dm6]	G	A	2.624e^-4	0.83	SYNONYMOUS_CODING CG8851	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15061971	2L_15061971_SNP [dm3] 2L_15061971_SNP [dm6]	T	G	2.626e^-4	0.83	DOWNSTREAM vig INTRON vas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
X	3522521	X_3522521_SNP [dm3] X_3628488_SNP [dm6]	C	A	2.627e^-4	0.83	INTRON AstA-R1
3L	9666031	3L_9666031_SNP [dm3] 3L_9672931_SNP [dm6]	T	C	2.639e^-4	0.83	INTRON fry
2R	12373275	2R_12373275_SNP [dm3] 2R_16485770_SNP [dm6]	C	T	2.641e^-4	0.83	UPSTREAM CG15712 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	12047027	2R_12047027_SNP [dm3] 2R_16159522_SNP [dm6]	A	G	2.644e^-4	0.83	UPSTREAM CG10734 INTRON lbk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	12366375	2R_12366375_SNP [dm3] 2R_16478870_SNP [dm6]	G	C	2.644e^-4	0.83	INTERGENIC
3R	13832416	3R_13832416_SNP [dm3] 3R_18006694_SNP [dm6]	T	C	2.646e^-4	0.83	INTRON cpo
2L	3222469	2L_3222469_DEL [dm3] 2L_3222469_DEL [dm6]	AA	A	2.646e^-4	0.83	INTERGENIC
2R	9260611	2R_9260611_SNP [dm3] 2R_13373106_SNP [dm6]	C	T	2.656e^-4	0.83	INTERGENIC
2R	10266263	2R_10266263_SNP [dm3] 2R_14378758_SNP [dm6]	C	T	2.661e^-4	0.83	INTRON Dh44-R1
2L	18679447	2L_18679447_SNP [dm3] 2L_18679447_SNP [dm6]	T	C	2.663e^-4	0.83	DOWNSTREAM tos INTRON CG31751
2R	13650103	2R_13650103_SNP [dm3] 2R_17762598_SNP [dm6]	T	A	2.666e^-4	0.83	SYNONYMOUS_CODING CG5009
3R	25137178	3R_25137178_SNP [dm3] 3R_29311456_SNP [dm6]	T	C	2.676e^-4	0.83	INTERGENIC
2L	13271365	2L_13271365_SNP [dm3] 2L_13271365_SNP [dm6]	G	A	2.679e^-4	0.83	SYNONYMOUS_CODING CG44085 UTR_5_PRIME CG44085	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16811095	2L_16811095_SNP [dm3] 2L_16811095_SNP [dm6]	T	C	2.679e^-4	0.83	INTRON CG13280 & 1 other
3R	14463870	3R_14463870_SNP [dm3] 3R_18638148_SNP [dm6]	C	A	2.682e^-4	0.83	INTRON qin & 1 other
2L	17750355	2L_17750355_SNP [dm3] 2L_17750355_SNP [dm6]	A	T	2.694e^-4	0.83	INTRON CadN	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	26780417	3R_26780417_SNP [dm3] 3R_30954695_SNP [dm6]	A	G	2.695e^-4	0.83	INTERGENIC
3R	26785264	3R_26785264_SNP [dm3] 3R_30959542_SNP [dm6]	G	A	2.695e^-4	0.83	UPSTREAM CG15548 INTERGENIC
2L	12479149	2L_12479149_SNP [dm3] 2L_12479149_SNP [dm6]	C	T	2.707e^-4	0.83	INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13443473	3R_13443473_SNP [dm3] 3R_17617751_SNP [dm6]	G	T	2.710e^-4	0.83	UPSTREAM tRNA:V3b:90BC DOWNSTREAM tRNA:P:90Ca & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	13650070	2R_13650070_SNP [dm3] 2R_17762565_SNP [dm6]	C	T	2.729e^-4	0.83	SYNONYMOUS_CODING CG5009
3R	24131579	3R_24131579_SNP [dm3] 3R_28305857_SNP [dm6]	T	A	2.729e^-4	0.83	INTERGENIC
2L	3546251	2L_3546251_SNP [dm3] 2L_3546251_SNP [dm6]	A	G	2.736e^-4	0.83	INTRON drm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3R	20330268	3R_20330268_SNP [dm3] 3R_24504546_SNP [dm6]	G	A	2.739e^-4	0.83	INTERGENIC
X	12967408	X_12967408_SNP [dm3] X_13073375_SNP [dm6]	C	T	2.744e^-4	0.83	INTRON rad
3L	5493905	3L_5493905_SNP [dm3] 3L_5500805_SNP [dm6]	A	G	2.745e^-4	0.83	DOWNSTREAM CR44518 & 1 other INTERGENIC
3R	24426330	3R_24426330_SNP [dm3] 3R_28600608_SNP [dm6]	G	A	2.748e^-4	0.83	UPSTREAM snoRNA:Psi28S-3405a INTRON Hrb98DE	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	25634643	3R_25634643_SNP [dm3] 3R_29808921_SNP [dm6]	A	C	2.751e^-4	0.83	SYNONYMOUS_CODING ca	TF binding site mE1_TFBS_cad
3R	16534434	3R_16534434_SNP [dm3] 3R_20708712_SNP [dm6]	T	C	2.769e^-4	0.83	INTRON Oamb
3R	26659694	3R_26659694_SNP [dm3] 3R_30833972_SNP [dm6]	C	A	2.785e^-4	0.83	INTRON CG15544
3R	13442190	3R_13442190_SNP [dm3] 3R_17616468_SNP [dm6]	T	C	2.791e^-4	0.83	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_zfh1
2L	4392059	2L_4392059_SNP [dm3] 2L_4392059_SNP [dm6]	C	T	2.802e^-4	0.83	SYNONYMOUS_CODING Tps1 DOWNSTREAM CG3652	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14156761	3L_14156761_SNP [dm3] 3L_14163661_SNP [dm6]	T	C	2.809e^-4	0.83	INTERGENIC	regulatory region REDfly_CRMs
3R	20333624	3R_20333624_SNP [dm3] 3R_24507902_SNP [dm6]	A	T	2.815e^-4	0.83	INTERGENIC
2L	16811087	2L_16811087_SNP [dm3] 2L_16811087_SNP [dm6]	G	A	2.818e^-4	0.83	INTRON CG13280 & 1 other
X	2873327	X_2873327_SNP [dm3] X_2979294_SNP [dm6]	A	G	2.818e^-4	0.83	INTRON kirre	regulatory region REDfly_CRMs
2R	9312454	2R_9312454_SNP [dm3] 2R_13424949_SNP [dm6]	A	T	2.820e^-4	0.83	UPSTREAM CG42321 INTRON CG42321	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	14494279	3R_14494279_SNP [dm3] 3R_18668557_SNP [dm6]	T	C	2.823e^-4	0.83	UPSTREAM CG7702 DOWNSTREAM CR45028 & 1 other INTRON CG31229
2R	6155556	2R_6155556_SNP [dm3] 2R_10268051_SNP [dm6]	T	A	2.823e^-4	0.83	UPSTREAM CAP INTRON CG12910	TF binding site mE1_TFBS_chinmo
3L	7874282	3L_7874282_SNP [dm3] 3L_7881182_SNP [dm6]	T	A	2.828e^-4	0.83	INTRON CG32365
3R	6915756	3R_6915756_SNP [dm3] 3R_11090034_SNP [dm6]	C	T	2.830e^-4	0.83	DOWNSTREAM CG43449 INTERGENIC
2L	12855478	2L_12855478_SNP [dm3] 2L_12855478_SNP [dm6]	C	T	2.833e^-4	0.83	INTERGENIC
3L	18936684	3L_18936684_SNP [dm3] 3L_18943584_SNP [dm6]	A	G	2.842e^-4	0.83	INTRON CG32204
X	12585036	X_12585036_SNP [dm3] X_12691003_SNP [dm6]	T	C	2.843e^-4	0.83	SYNONYMOUS_CODING Smr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14015001	2L_14015001_SNP [dm3] 2L_14015001_SNP [dm6]	G	T	2.846e^-4	0.83	INTRON bgm
X	11866430	X_11866430_SNP [dm3] X_11972397_SNP [dm6]	C	T	2.850e^-4	0.83	INTRON cac
2R	4026232	2R_4026232_SNP [dm3] 2R_8138727_SNP [dm6]	T	G	2.850e^-4	0.83	INTRON Lpin
2L	22008987	2L_22008987_DEL [dm3] 2L_22008987_DEL [dm6]	GT	C	2.853e^-4	0.83	INTERGENIC
3L	7854385	3L_7854385_SNP [dm3] 3L_7861285_SNP [dm6]	A	T	2.854e^-4	0.83	INTRON Pdp1
3R	23729694	3R_23729694_SNP [dm3] 3R_27903972_SNP [dm6]	T	C	2.856e^-4	0.83	INTRON CG34353
3L	766427	3L_766427_SNP [dm3] 3L_766427_SNP [dm6]	C	A	2.856e^-4	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	3155673	2L_3155673_SNP [dm3] 2L_3155673_SNP [dm6]	A	C	2.860e^-4	0.83	INTRON Mad	TF binding site mE1_TFBS_cad
2L	14394810	2L_14394810_SNP [dm3] 2L_14394810_SNP [dm6]	G	A	2.862e^-4	0.83	INTRON elB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13163609	2L_13163609_SNP [dm3] 2L_13163609_SNP [dm6]	G	T	2.864e^-4	0.83	NON_SYNONYMOUS_CODING DnaJ-H DOWNSTREAM CG5204	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14226828	3L_14226828_SNP [dm3] 3L_14233728_SNP [dm6]	C	T	2.867e^-4	0.83	SYNONYMOUS_CODING CG7924 DOWNSTREAM nuf	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	8777757	2R_8777757_SNP [dm3] 2R_12890252_SNP [dm6]	C	T	2.873e^-4	0.83	INTRON vg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	4550185	3L_4550185_DEL [dm3] 3L_4550185_DEL [dm6]	ATGTTAATGTTAAT...	A	2.886e^-4	0.83	UPSTREAM CG11357 INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3L	767806	3L_767806_SNP [dm3] 3L_767806_SNP [dm6]	G	A	2.886e^-4	0.83	INTERGENIC
X	21306103	X_21306103_SNP [dm3] X_21435076_SNP [dm6]	G	T	2.888e^-4	0.83	INTRON CG42343	TF binding site BDTNP1_TFBS_twi
2L	1024350	2L_1024350_SNP [dm3] 2L_1024350_SNP [dm6]	A	C	2.889e^-4	0.83	INTRON IA-2
3R	19204289	3R_19204289_SNP [dm3] 3R_23378567_SNP [dm6]	G	C	2.890e^-4	0.83	NON_SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_sens
3R	14493964	3R_14493964_SNP [dm3] 3R_18668242_SNP [dm6]	A	T	2.894e^-4	0.83	DOWNSTREAM CR45028 & 1 other INTRON CG31229	TF binding site mE1_TFBS_cad
3L	12931633	3L_12931633_SNP [dm3] 3L_12938533_SNP [dm6]	C	T	2.906e^-4	0.83	INTERGENIC
3R	3784724	3R_3784724_SNP [dm3] 3R_7959002_SNP [dm6]	T	C	2.909e^-4	0.83	INTRON dsx
2L	8325755	2L_8325755_SNP [dm3] 2L_8325755_SNP [dm6]	T	A	2.909e^-4	0.83	UPSTREAM CG7781 INTERGENIC
3R	13964575	3R_13964575_SNP [dm3] 3R_18138853_SNP [dm6]	A	T	2.910e^-4	0.83	INTERGENIC
X	10567491	X_10567491_SNP [dm3] X_10673458_SNP [dm6]	G	A	2.914e^-4	0.83	UTR_5_PRIME CG12637 INTRON X11Lbeta	TF binding site BDTNP1_TFBS_twi
X	21986961	X_21986961_SNP [dm3] X_22585125_SNP [dm6]	A	T	2.919e^-4	0.83	INTRON Cda4
3R	11304205	3R_11304205_SNP [dm3] 3R_15478483_SNP [dm6]	C	A	2.935e^-4	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6587023	2R_6587023_DEL [dm3] 2R_10699518_DEL [dm6]	GT	G	2.944e^-4	0.83	INTRON stan	TF binding site mE1_TFBS_HSA
2R	19372478	2R_19372478_SNP [dm3] 2R_23484955_SNP [dm6]	A	G	2.949e^-4	0.83	INTRON CG43795
2R	16927691	2R_16927691_SNP [dm3] 2R_21040186_SNP [dm6]	T	C	2.951e^-4	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	412933	3R_412933_SNP [dm3] 3R_4587211_SNP [dm6]	C	G	2.952e^-4	0.83	INTRON CR45558	transposable element FlyBase
3L	16298742	3L_16298742_SNP [dm3] 3L_16305642_SNP [dm6]	G	C	2.962e^-4	0.83	SYNONYMOUS_CODING CG13043 UPSTREAM CG13063 DOWNSTREAM CG43249	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	19153875	2R_19153875_SNP [dm3] 2R_23266352_SNP [dm6]	T	A	2.966e^-4	0.83	UPSTREAM CG12782 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	19153508	2R_19153508_SNP [dm3] 2R_23265985_SNP [dm6]	T	A	2.967e^-4	0.83	UPSTREAM CG12782 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	18050344	3R_18050344_SNP [dm3] 3R_22224622_SNP [dm6]	A	T	2.973e^-4	0.83	INTRON SKIP
2L	22206785	2L_22206785_SNP [dm3] 2L_22206785_SNP [dm6]	C	A	2.982e^-4	0.83	INTRON Ir40a	transposable element FlyBase
2L	927427	2L_927427_SNP [dm3] 2L_927427_SNP [dm6]	A	G	2.991e^-4	0.83	INTRON CG4341
2L	9654011	2L_9654011_SNP [dm3] 2L_9654011_SNP [dm6]	A	G	2.992e^-4	0.83	INTRON Apoltp
X	2406865	X_2406865_SNP [dm3] X_2512832_SNP [dm6]	A	G	2.994e^-4	0.83	INTRON trol
3R	18129074	3R_18129074_SNP [dm3] 3R_22303352_SNP [dm6]	C	T	2.998e^-4	0.83	INTRON CG7084
3L	8638433	3L_8638433_SNP [dm3] 3L_8645333_SNP [dm6]	T	G	3.003e^-4	0.83	INTRON CG13305
2R	17755996	2R_17755996_DEL [dm3] 2R_21868491_DEL [dm6]	TT	C	3.019e^-4	0.83	INTERGENIC
2R	9203502	2R_9203502_SNP [dm3] 2R_13315997_SNP [dm6]	T	C	3.021e^-4	0.83	INTERGENIC
3L	20499831	3L_20499831_SNP [dm3] 3L_20506731_SNP [dm6]	G	A	3.023e^-4	0.83	NON_SYNONYMOUS_CODING CG5078 INTRON CG32425	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18652918	2R_18652918_SNP [dm3] 2R_22765413_SNP [dm6]	A	G	3.037e^-4	0.83	UTR_3_PRIME CG13527 DOWNSTREAM CG13527 INTRON CG42260
3R	22441304	3R_22441304_DEL [dm3] 3R_26615582_DEL [dm6]	CC	C	3.039e^-4	0.83	INTERGENIC
3R	24755406	3R_24755406_SNP [dm3] 3R_28929684_SNP [dm6]	G	C	3.046e^-4	0.83	INTRON CG14521
3L	9729980	3L_9729980_SNP [dm3] 3L_9736880_SNP [dm6]	A	G	3.046e^-4	0.83	INTRON CG42268	TF binding site BDTNP1_TFBS_dl
2R	9254061	2R_9254061_SNP [dm3] 2R_13366556_SNP [dm6]	C	A	3.053e^-4	0.83	INTERGENIC
2R	17467774	2R_17467774_SNP [dm3] 2R_21580269_SNP [dm6]	G	C	3.055e^-4	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14661390	2R_14661390_SNP [dm3] 2R_18773885_SNP [dm6]	A	G	3.055e^-4	0.83	NON_SYNONYMOUS_CODING Mctp UTR_3_PRIME Mctp
3L	16232541	3L_16232541_SNP [dm3] 3L_16239441_SNP [dm6]	A	T	3.057e^-4	0.83	UTR_3_PRIME l_3_72Dr	TF binding site mE1_TFBS_cad
3L	13208514	3L_13208514_SNP [dm3] 3L_13215414_SNP [dm6]	T	G	3.057e^-4	0.83	UPSTREAM CR43914 EXON CR45097	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16921207	2L_16921207_SNP [dm3] 2L_16921207_SNP [dm6]	C	T	3.059e^-4	0.83	INTERGENIC
2R	15901695	2R_15901695_SNP [dm3] 2R_20014190_SNP [dm6]	A	C	3.066e^-4	0.83	UPSTREAM CR44629 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26783616	3R_26783616_SNP [dm3] 3R_30957894_SNP [dm6]	T	C	3.068e^-4	0.83	INTERGENIC
3R	14494577	3R_14494577_DEL [dm3] 3R_18668855_DEL [dm6]	CCTT	C	3.070e^-4	0.83	UPSTREAM CG7702 INTRON CG31229 EXON CR45028
X	17674802	X_17674802_SNP [dm3] X_17780769_SNP [dm6]	C	A	3.072e^-4	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	19102395	2L_19102395_SNP [dm3] 2L_19102395_SNP [dm6]	A	C	3.075e^-4	0.83	NON_SYNONYMOUS_CODING CG17344 UTR_3_PRIME CG43731 INTRON Lim3
3L	14139025	3L_14139025_SNP [dm3] 3L_14145925_SNP [dm6]	C	A	3.076e^-4	0.83	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	8777036	2R_8777036_SNP [dm3] 2R_12889531_SNP [dm6]	G	C	3.084e^-4	0.83	INTRON vg	regulatory region FlyBase TF binding site mE1_TFBS_sens
X	10567464	X_10567464_SNP [dm3] X_10673431_SNP [dm6]	T	A	3.087e^-4	0.83	UTR_5_PRIME CG12637 INTRON X11Lbeta	TF binding site BDTNP1_TFBS_twi
3R	20332003	3R_20332003_INS [dm3] 3R_24506281_INS [dm6]	A	ATT	3.088e^-4	0.83	INTERGENIC	transposable element FlyBase
2L	1049358	2L_1049358_SNP [dm3] 2L_1049358_SNP [dm6]	T	A	3.093e^-4	0.83	DOWNSTREAM S INTERGENIC
3L	8300050	3L_8300050_SNP [dm3] 3L_8306950_SNP [dm6]	G	A	3.097e^-4	0.83	SYNONYMOUS_CODING Gr66a DOWNSTREAM BI-1
2L	1093784	2L_1093784_SNP [dm3] 2L_1093784_SNP [dm6]	C	A	3.098e^-4	0.83	INTRON CG4629
3L	15968296	3L_15968296_SNP [dm3] 3L_15975196_SNP [dm6]	G	A	3.098e^-4	0.83	UPSTREAM CG17026 INTRON brm	TF binding site mE1_TFBS_HSA
2L	9112632	2L_9112632_SNP [dm3] 2L_9112632_SNP [dm6]	A	G	3.100e^-4	0.83	SYNONYMOUS_CODING Or30a
3R	17252972	3R_17252972_SNP [dm3] 3R_21427250_SNP [dm6]	C	G	3.106e^-4	0.83	INTRON lbl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	16966449	2L_16966449_SNP [dm3] 2L_16966449_SNP [dm6]	G	A	3.109e^-4	0.83	DOWNSTREAM CR45285 INTERGENIC
3R	13435568	3R_13435568_SNP [dm3] 3R_17609846_SNP [dm6]	C	T	3.112e^-4	0.83	SYNONYMOUS_CODING CG14329
3R	17786596	3R_17786596_SNP [dm3] 3R_21960874_SNP [dm6]	T	A	3.113e^-4	0.83	NON_SYNONYMOUS_CODING Eip93F
2R	4933840	2R_4933840_INS [dm3] 2R_9046335_INS [dm6]	C	CAC	3.114e^-4	0.83	UTR_3_PRIME CG13743
2R	9204716	2R_9204716_SNP [dm3] 2R_13317211_SNP [dm6]	G	C	3.120e^-4	0.83	INTERGENIC
3R	24131797	3R_24131797_SNP [dm3] 3R_28306075_SNP [dm6]	A	G	3.123e^-4	0.83	INTERGENIC
2L	3282592	2L_3282592_SNP [dm3] 2L_3282592_SNP [dm6]	T	G	3.131e^-4	0.83	INTERGENIC
3L	784292	3L_784292_SNP [dm3] 3L_784292_SNP [dm6]	A	G	3.133e^-4	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9833423	2R_9833423_SNP [dm3] 2R_13945918_SNP [dm6]	A	G	3.134e^-4	0.83	UTR_3_PRIME AGO1
X	21306253	X_21306253_SNP [dm3] X_21435226_SNP [dm6]	T	C	3.149e^-4	0.83	INTRON CG42343	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8179240	2L_8179240_SNP [dm3] 2L_8179240_SNP [dm6]	C	T	3.166e^-4	0.83	SYNONYMOUS_CODING Piezo	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18821220	2R_18821220_SNP [dm3] 2R_22933697_SNP [dm6]	T	C	3.168e^-4	0.83	UTR_5_PRIME CG3788 UPSTREAM CG3788 DOWNSTREAM CG3800	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2L	7863154	2L_7863154_SNP [dm3] 2L_7863154_SNP [dm6]	T	G	3.171e^-4	0.83	INTERGENIC
3L	4781750	3L_4781750_SNP [dm3] 3L_4781750_SNP [dm6]	A	T	3.175e^-4	0.83	INTRON RhoGEF64C
3L	4090390	3L_4090390_SNP [dm3] 3L_4090390_SNP [dm6]	A	T	3.183e^-4	0.83	NON_SYNONYMOUS_CODING CG14989	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16927712	2R_16927712_SNP [dm3] 2R_21040207_SNP [dm6]	A	T	3.184e^-4	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	18605203	3L_18605203_SNP [dm3] 3L_18612103_SNP [dm6]	A	T	3.189e^-4	0.83	DOWNSTREAM CG32201 INTRON CG4174 & 2 others
3R	9221302	3R_9221302_SNP [dm3] 3R_13395580_SNP [dm6]	A	G	3.192e^-4	0.83	UPSTREAM CCHa2 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
2L	1024337	2L_1024337_DEL [dm3] 2L_1024337_DEL [dm6]	TATCAAA	T	3.216e^-4	0.83	INTRON IA-2
3L	6757253	3L_6757253_SNP [dm3] 3L_6764153_SNP [dm6]	A	T	3.217e^-4	0.83	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	14176734	2L_14176734_SNP [dm3] 2L_14176734_SNP [dm6]	A	T	3.218e^-4	0.83	INTRON CG43333
2L	3370299	2L_3370299_SNP [dm3] 2L_3370299_SNP [dm6]	G	C	3.224e^-4	0.83	INTRON CG34394
2L	6933823	2L_6933823_SNP [dm3] 2L_6933823_SNP [dm6]	A	T	3.229e^-4	0.83	SYNONYMOUS_CODING CG18304	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3565000	2L_3565000_DEL [dm3] 2L_3565000_DEL [dm6]	TTTTGCAAACGCT...	T	3.234e^-4	0.83	INTERGENIC
2R	11829844	2R_11829844_SNP [dm3] 2R_15942339_SNP [dm6]	A	T	3.240e^-4	0.83	UPSTREAM CG8299 & 1 other INTERGENIC
3R	17721547	3R_17721547_SNP [dm3] 3R_21895825_SNP [dm6]	C	T	3.241e^-4	0.83	INTRON CG6678
3L	6757359	3L_6757359_SNP [dm3] 3L_6764259_SNP [dm6]	T	A	3.242e^-4	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2R	8496972	2R_8496972_SNP [dm3] 2R_12609467_SNP [dm6]	G	T	3.245e^-4	0.83	SYNONYMOUS_CODING Amph INTRON Amph
2R	13799327	2R_13799327_SNP [dm3] 2R_17911822_SNP [dm6]	C	T	3.245e^-4	0.83	INTRON Elk
X	5246266	X_5246266_SNP [dm3] X_5352233_SNP [dm6]	C	A	3.246e^-4	0.83	SYNONYMOUS_CODING SK	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	10241000	3L_10241000_SNP [dm3] 3L_10247900_SNP [dm6]	G	A	3.259e^-4	0.83	DOWNSTREAM CR44539 EXON CR44540
2L	17443376	2L_17443376_SNP [dm3] 2L_17443376_SNP [dm6]	C	T	3.277e^-4	0.83	INTRON dl	TF binding site BDTNP1_TFBS_dl
3R	18392548	3R_18392548_SNP [dm3] 3R_22566826_SNP [dm6]	A	G	3.278e^-4	0.83	INTERGENIC
3R	23203625	3R_23203625_SNP [dm3] 3R_27377903_SNP [dm6]	A	T	3.289e^-4	0.83	UTR_3_PRIME side INTRON side
3R	439323	3R_439323_SNP [dm3] 3R_4613601_SNP [dm6]	G	T	3.292e^-4	0.83	INTRON 5-HT2A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12356322	2L_12356322_DEL [dm3] 2L_12356322_DEL [dm6]	TAAATTTACATG...	C	3.293e^-4	0.83	UPSTREAM CG17010 INTRON bru-2
X	19163499	X_19163499_SNP [dm3] X_19269466_SNP [dm6]	T	C	3.295e^-4	0.83	UPSTREAM CG8010 INTRON Vav	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9561210	2L_9561210_SNP [dm3] 2L_9561210_SNP [dm6]	T	C	3.300e^-4	0.83	UPSTREAM jp INTRON jp
3L	1365725	3L_1365725_SNP [dm3] 3L_1365725_SNP [dm6]	C	A	3.301e^-4	0.83	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl
2L	12855282	2L_12855282_SNP [dm3] 2L_12855282_SNP [dm6]	A	T	3.303e^-4	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	1815466	3L_1815466_SNP [dm3] 3L_1815466_SNP [dm6]	A	G	3.305e^-4	0.83	INTRON GV1
2R	4867938	2R_4867938_SNP [dm3] 2R_8980433_SNP [dm6]	C	A	3.319e^-4	0.83	INTRON CG8213
3R	16396961	3R_16396961_SNP [dm3] 3R_20571239_SNP [dm6]	G	C	3.320e^-4	0.83	SYNONYMOUS_CODING CG5191	TF binding site mE1_TFBS_chinmo
2L	11057310	2L_11057310_SNP [dm3] 2L_11057310_SNP [dm6]	T	C	3.320e^-4	0.83	UPSTREAM Samuel INTRON Samuel	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	26815138	3R_26815138_SNP [dm3] 3R_30989416_SNP [dm6]	A	T	3.325e^-4	0.83	DOWNSTREAM CG31008 INTRON 5-HT7
2R	7638620	2R_7638620_SNP [dm3] 2R_11751115_SNP [dm6]	A	T	3.326e^-4	0.83	INTERGENIC
3R	13435453	3R_13435453_SNP [dm3] 3R_17609731_SNP [dm6]	C	T	3.329e^-4	0.83	SYNONYMOUS_CODING CG14329
2L	9281511	2L_9281511_SNP [dm3] 2L_9281511_SNP [dm6]	C	A	3.334e^-4	0.83	INTRON Ggamma30A
2R	11000152	2R_11000152_SNP [dm3] 2R_15112647_SNP [dm6]	A	G	3.335e^-4	0.83	INTERGENIC
2L	17443389	2L_17443389_SNP [dm3] 2L_17443389_SNP [dm6]	T	C	3.338e^-4	0.83	INTRON dl	TF binding site BDTNP1_TFBS_dl
2L	6264459	2L_6264459_SNP [dm3] 2L_6264459_SNP [dm6]	G	A	3.340e^-4	0.83	UTR_5_PRIME CG13983 INTRON Ddr	TF binding site mE1_TFBS_sens
3R	7927287	3R_7927287_SNP [dm3] 3R_12101565_SNP [dm6]	T	C	3.350e^-4	0.83	INTRON dpr17
X	15659317	X_15659317_SNP [dm3] X_15765284_SNP [dm6]	C	G	3.354e^-4	0.83	DOWNSTREAM CG8952 INTRON CG17209
2R	17570852	2R_17570852_SNP [dm3] 2R_21683347_SNP [dm6]	A	G	3.355e^-4	0.83	INTRON CG30263	TF binding site mE1_TFBS_cad
3L	15693520	3L_15693520_SNP [dm3] 3L_15700420_SNP [dm6]	A	G	3.362e^-4	0.83	UPSTREAM comm2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	7067847	3L_7067847_SNP [dm3] 3L_7074747_SNP [dm6]	T	G	3.362e^-4	0.83	SPLICE_SITE_ACCEPTOR CG34030 INTRON CG8641 & 1 other
2L	12356142	2L_12356142_SNP [dm3] 2L_12356142_SNP [dm6]	G	C	3.362e^-4	0.83	UPSTREAM CG17010 INTRON bru-2
2R	15923710	2R_15923710_SNP [dm3] 2R_20036205_SNP [dm6]	C	G	3.368e^-4	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26783621	3R_26783621_SNP [dm3] 3R_30957899_SNP [dm6]	A	T	3.378e^-4	0.83	INTERGENIC
2L	17782807	2L_17782807_SNP [dm3] 2L_17782807_SNP [dm6]	A	T	3.384e^-4	0.83	INTERGENIC
X	18446139	X_18446139_SNP [dm3] X_18552106_SNP [dm6]	G	C	3.386e^-4	0.83	INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14015002	2L_14015002_INS [dm3] 2L_14015002_INS [dm6]	C	CG	3.394e^-4	0.83	INTRON bgm
3R	9673200	3R_9673200_SNP [dm3] 3R_13847478_SNP [dm6]	A	T	3.396e^-4	0.83	INTERGENIC	TF binding site mE1_TFBS_cad
2L	6262061	2L_6262061_SNP [dm3] 2L_6262061_SNP [dm6]	A	T	3.399e^-4	0.83	INTRON Ddr
3L	9581246	3L_9581246_SNP [dm3] 3L_9588146_SNP [dm6]	A	G	3.400e^-4	0.83	INTRON CG42673	TF binding site mE1_TFBS_chinmo
3R	25129036	3R_25129036_SNP [dm3] 3R_29303314_SNP [dm6]	A	G	3.405e^-4	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	6865422	2R_6865422_DEL [dm3] 2R_10977917_DEL [dm6]	AA	A	3.407e^-4	0.83	DOWNSTREAM luna INTERGENIC
3L	9228780	3L_9228780_SNP [dm3] 3L_9235680_SNP [dm6]	C	A	3.408e^-4	0.83	SYNONYMOUS_CODING CG4483
3L	8542961	3L_8542961_SNP [dm3] 3L_8549861_SNP [dm6]	G	A	3.411e^-4	0.83	INTRON rhea	TF binding site BDTNP1_TFBS_twi
3L	10489953	3L_10489953_SNP [dm3] 3L_10496853_SNP [dm6]	A	G	3.411e^-4	0.83	INTRON A2bp1
3R	13431885	3R_13431885_SNP [dm3] 3R_17606163_SNP [dm6]	C	A	3.415e^-4	0.83	UTR_5_PRIME sll	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	18380630	X_18380630_SNP [dm3] X_18486597_SNP [dm6]	C	A	3.416e^-4	0.83	DOWNSTREAM CG15046 INTRON psh
3R	18392088	3R_18392088_SNP [dm3] 3R_22566366_SNP [dm6]	T	A	3.418e^-4	0.83	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	23212193	3R_23212193_SNP [dm3] 3R_27386471_SNP [dm6]	G	A	3.420e^-4	0.83	INTRON side
2R	9833422	2R_9833422_SNP [dm3] 2R_13945917_SNP [dm6]	T	A	3.428e^-4	0.83	UTR_3_PRIME AGO1
X	15655593	X_15655593_SNP [dm3] X_15761560_SNP [dm6]	C	A	3.429e^-4	0.83	UPSTREAM Graf INTRON mRpL3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
2L	12855501	2L_12855501_SNP [dm3] 2L_12855501_SNP [dm6]	A	T	3.431e^-4	0.83	INTERGENIC
3R	24365911	3R_24365911_SNP [dm3] 3R_28540189_SNP [dm6]	T	G	3.433e^-4	0.83	UTR_5_PRIME Ppn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25946516	3R_25946516_INS [dm3] 3R_30120794_INS [dm6]	G	GG	3.440e^-4	0.83	UTR_3_PRIME sima	TF binding site mE1_TFBS_chinmo
X	18802446	X_18802446_SNP [dm3] X_18908413_SNP [dm6]	A	C	3.441e^-4	0.83	INTRON CG7378
2L	17467013	2L_17467013_SNP [dm3] 2L_17467013_SNP [dm6]	C	G	3.445e^-4	0.83	INTRON BicD
3L	12704641	3L_12704641_SNP [dm3] 3L_12711541_SNP [dm6]	A	G	3.446e^-4	0.83	INTERGENIC
3L	14120941	3L_14120941_SNP [dm3] 3L_14127841_SNP [dm6]	A	T	3.448e^-4	0.83	INTRON Sox21b
3L	2835271	3L_2835271_SNP [dm3] 3L_2835271_SNP [dm6]	T	A	3.449e^-4	0.83	INTRON CG43444
2R	9886469	2R_9886469_SNP [dm3] 2R_13998964_SNP [dm6]	T	C	3.449e^-4	0.83	INTRON mam	TF binding site BDTNP1_TFBS_dl
3R	14138339	3R_14138339_SNP [dm3] 3R_18312617_SNP [dm6]	T	C	3.457e^-4	0.83	UPSTREAM PKD INTRON PKD	TF binding site mE1_TFBS_HSA
2L	3572190	2L_3572190_SNP [dm3] 2L_3572190_SNP [dm6]	T	G	3.457e^-4	0.83	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	4732431	2R_4732431_SNP [dm3] 2R_8844926_SNP [dm6]	A	T	3.462e^-4	0.83	INTRON sns
2L	18677596	2L_18677596_SNP [dm3] 2L_18677596_SNP [dm6]	A	C	3.464e^-4	0.83	UPSTREAM Mst36Fa INTRON CG31751	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	20332055	3R_20332055_SNP [dm3] 3R_24506333_SNP [dm6]	G	A	3.464e^-4	0.83	INTERGENIC
X	10411823	X_10411823_SNP [dm3] X_10517790_SNP [dm6]	G	A	3.464e^-4	0.83	INTRON spri	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14394811	2L_14394811_SNP [dm3] 2L_14394811_SNP [dm6]	T	A	3.473e^-4	0.83	INTRON elB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	412348	3L_412348_SNP [dm3] 3L_412348_SNP [dm6]	T	C	3.477e^-4	0.83	INTERGENIC
2L	12855284	2L_12855284_MNP [dm3] 2L_12855284_MNP [dm6]	ATTTC	TGACG	3.479e^-4	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	12855290	2L_12855290_SNP [dm3] 2L_12855290_SNP [dm6]	C	G	3.479e^-4	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	16107611	3R_16107611_SNP [dm3] 3R_20281889_SNP [dm6]	A	T	3.490e^-4	0.83	INTRON cic
3L	13053725	3L_13053725_SNP [dm3] 3L_13060625_SNP [dm6]	T	G	3.505e^-4	0.83	NON_SYNONYMOUS_CODING CG14115	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9312451	2R_9312451_SNP [dm3] 2R_13424946_SNP [dm6]	G	C	3.517e^-4	0.83	UPSTREAM CG42321 INTRON CG42321	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	24570225	3R_24570225_SNP [dm3] 3R_28744503_SNP [dm6]	G	T	3.518e^-4	0.83	UTR_5_PRIME AstA-R2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14721759	2R_14721759_SNP [dm3] 2R_18834254_SNP [dm6]	C	G	3.519e^-4	0.83	INTRON CG15098
2R	19546692	2R_19546692_SNP [dm3] 2R_23659169_SNP [dm6]	G	A	3.524e^-4	0.83	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	3520778	X_3520778_SNP [dm3] X_3626745_SNP [dm6]	C	A	3.526e^-4	0.83	INTRON AstA-R1
2L	7902507	2L_7902507_SNP [dm3] 2L_7902507_SNP [dm6]	A	G	3.543e^-4	0.83	INTRON Snoo
3L	11121167	3L_11121167_SNP [dm3] 3L_11128067_SNP [dm6]	G	A	3.549e^-4	0.83	INTRON CG42575
2R	8991961	2R_8991961_SNP [dm3] 2R_13104456_SNP [dm6]	A	G	3.562e^-4	0.83	NON_SYNONYMOUS_CODING CG44341
2L	7945994	2L_7945994_SNP [dm3] 2L_7945994_SNP [dm6]	G	A	3.564e^-4	0.83	INTRON Snoo
3L	10294062	3L_10294062_SNP [dm3] 3L_10300962_SNP [dm6]	A	T	3.564e^-4	0.83	INTERGENIC
2L	9519384	2L_9519384_SNP [dm3] 2L_9519384_SNP [dm6]	A	G	3.568e^-4	0.83	INTRON CG33298
3R	20330324	3R_20330324_SNP [dm3] 3R_24504602_SNP [dm6]	T	G	3.573e^-4	0.83	INTERGENIC
2R	9009446	2R_9009446_SNP [dm3] 2R_13121941_SNP [dm6]	T	C	3.581e^-4	0.83	INTRON CG13325
2R	6169869	2R_6169869_SNP [dm3] 2R_10282364_SNP [dm6]	A	G	3.583e^-4	0.83	SYNONYMOUS_CODING CAP INTRON CAP	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14494562	3R_14494562_SNP [dm3] 3R_18668840_SNP [dm6]	G	T	3.584e^-4	0.83	UPSTREAM CG7702 INTRON CG31229 EXON CR45028
3R	24426640	3R_24426640_SNP [dm3] 3R_28600918_SNP [dm6]	C	G	3.588e^-4	0.83	SYNONYMOUS_CODING Hrb98DE UPSTREAM snoRNA:Psi28S-3405a & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	16201880	2L_16201880_SNP [dm3] 2L_16201880_SNP [dm6]	C	G	3.594e^-4	0.83	INTERGENIC	TF binding site mE1_TFBS_inv
2L	9173053	2L_9173053_SNP [dm3] 2L_9173053_SNP [dm6]	T	A	3.607e^-4	0.83	INTRON tai
2L	12479167	2L_12479167_SNP [dm3] 2L_12479167_SNP [dm6]	A	T	3.608e^-4	0.83	INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16990724	2L_16990724_SNP [dm3] 2L_16990724_SNP [dm6]	A	C	3.611e^-4	0.83	INTRON beat-IIIb
3R	23378137	3R_23378137_SNP [dm3] 3R_27552415_SNP [dm6]	T	A	3.621e^-4	0.83	INTRON Klp98A	TF binding site mE1_TFBS_cad
2R	2056009	2R_2056009_SNP [dm3] 2R_6168504_SNP [dm6]	A	G	3.623e^-4	0.83	INTRON EcR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2L	16213854	2L_16213854_SNP [dm3] 2L_16213854_SNP [dm6]	A	G	3.625e^-4	0.83	DOWNSTREAM CG31819 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13442260	3R_13442260_SNP [dm3] 3R_17616538_SNP [dm6]	A	T	3.628e^-4	0.83	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
3L	9754536	3L_9754536_SNP [dm3] 3L_9761436_SNP [dm6]	T	C	3.635e^-4	0.83	DOWNSTREAM CR45407 INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	10568926	2R_10568926_SNP [dm3] 2R_14681421_SNP [dm6]	A	T	3.636e^-4	0.83	INTRON mspo
2L	17782889	2L_17782889_SNP [dm3] 2L_17782889_SNP [dm6]	T	C	3.640e^-4	0.83	INTERGENIC
3R	14494213	3R_14494213_SNP [dm3] 3R_18668491_SNP [dm6]	C	T	3.641e^-4	0.83	UPSTREAM CG7702 DOWNSTREAM CR45028 & 1 other INTRON CG31229
2L	3155627	2L_3155627_SNP [dm3] 2L_3155627_SNP [dm6]	A	C	3.648e^-4	0.83	INTRON Mad	TF binding site mE1_TFBS_cad
3R	6928451	3R_6928451_SNP [dm3] 3R_11102729_SNP [dm6]	C	T	3.648e^-4	0.83	INTERGENIC
2L	16990669	2L_16990669_SNP [dm3] 2L_16990669_SNP [dm6]	A	T	3.648e^-4	0.83	INTRON beat-IIIb
3L	2733642	3L_2733642_SNP [dm3] 3L_2733642_SNP [dm6]	C	T	3.649e^-4	0.83	INTRON Mrtf
3R	14735578	3R_14735578_SNP [dm3] 3R_18909856_SNP [dm6]	A	T	3.664e^-4	0.83	UTR_3_PRIME EndoA
2R	9433903	2R_9433903_SNP [dm3] 2R_13546398_SNP [dm6]	A	G	3.669e^-4	0.83	UPSTREAM CG6145 INTRON CG6145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3R	25297695	3R_25297695_SNP [dm3] 3R_29471973_SNP [dm6]	A	G	3.672e^-4	0.83	INTRON Ptp99A
3R	13443094	3R_13443094_SNP [dm3] 3R_17617372_SNP [dm6]	A	G	3.680e^-4	0.83	UPSTREAM tRNA:V3b:90BC DOWNSTREAM tRNA:P:90Ca & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_zfh1
X	17028156	X_17028156_DEL [dm3] X_17134123_DEL [dm6]	GC	A	3.682e^-4	0.83	INTRON CG5004
2R	12112565	2R_12112565_SNP [dm3] 2R_16225060_SNP [dm6]	G	A	3.684e^-4	0.83	INTRON CG15706
X	20388541	X_20388541_SNP [dm3] X_20517514_SNP [dm6]	T	A	3.688e^-4	0.83	INTRON Tak1
3L	2991318	3L_2991318_SNP [dm3] 3L_2991318_SNP [dm6]	C	T	3.693e^-4	0.83	INTERGENIC
2L	14934802	2L_14934802_SNP [dm3] 2L_14934802_SNP [dm6]	C	T	3.707e^-4	0.83	INTRON CG42313
X	16697821	X_16697821_SNP [dm3] X_16803788_SNP [dm6]	T	A	3.709e^-4	0.83	NON_SYNONYMOUS_CODING CG13005 UPSTREAM CG9125	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	7975155	X_7975155_SNP [dm3] X_8081122_SNP [dm6]	A	G	3.710e^-4	0.83	INTRON CG2254	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13689456	3R_13689456_SNP [dm3] 3R_17863734_SNP [dm6]	G	A	3.714e^-4	0.83	INTRON tinc
2L	16501671	2L_16501671_SNP [dm3] 2L_16501671_SNP [dm6]	T	C	3.717e^-4	0.83	UPSTREAM Tpr2 INTRON Tpr2	TF binding site mE1_TFBS_Trl
3R	16534441	3R_16534441_SNP [dm3] 3R_20708719_SNP [dm6]	C	T	3.717e^-4	0.83	INTRON Oamb
3L	4994618	3L_4994618_SNP [dm3] 3L_4994618_SNP [dm6]	G	A	3.719e^-4	0.83	NON_SYNONYMOUS_CODING CG32232 INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	6262055	2L_6262055_SNP [dm3] 2L_6262055_SNP [dm6]	A	G	3.727e^-4	0.83	INTRON Ddr
X	19162252	X_19162252_DEL [dm3] X_19268219_DEL [dm6]	AC	A	3.728e^-4	0.83	INTRON Vav & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11300340	2L_11300340_SNP [dm3] 2L_11300340_SNP [dm6]	T	A	3.731e^-4	0.83	INTERGENIC
3L	6757062	3L_6757062_SNP [dm3] 3L_6763962_SNP [dm6]	T	C	3.736e^-4	0.83	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA
2R	9080496	2R_9080496_SNP [dm3] 2R_13192991_SNP [dm6]	C	A	3.739e^-4	0.83	INTRON Kdm4B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
3R	26674195	3R_26674195_SNP [dm3] 3R_30848473_SNP [dm6]	C	A	3.744e^-4	0.83	INTERGENIC	regulatory region REDfly_CRMs
2L	7758180	2L_7758180_SNP [dm3] 2L_7758180_SNP [dm6]	A	G	3.749e^-4	0.83	INTRON CG7196	TF binding site mE1_TFBS_HSA
X	21305261	X_21305261_SNP [dm3] X_21434234_SNP [dm6]	T	G	3.753e^-4	0.83	INTRON CG42343	transposable element FlyBase
3L	3920840	3L_3920840_SNP [dm3] 3L_3920840_SNP [dm6]	A	G	3.754e^-4	0.83	INTRON Eip63F-1
2L	6700382	2L_6700382_SNP [dm3] 2L_6700382_SNP [dm6]	G	A	3.758e^-4	0.83	SYNONYMOUS_CODING Tsp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	791464	3L_791464_SNP [dm3] 3L_791464_SNP [dm6]	A	C	3.760e^-4	0.83	INTERGENIC
2R	9380915	2R_9380915_SNP [dm3] 2R_13493410_SNP [dm6]	T	C	3.764e^-4	0.83	INTRON bbc
3R	14493966	3R_14493966_DEL [dm3] 3R_18668244_DEL [dm6]	TACTA	T	3.765e^-4	0.83	DOWNSTREAM CR45028 & 1 other INTRON CG31229	TF binding site mE1_TFBS_cad
2L	3513727	2L_3513727_SNP [dm3] 2L_3513727_SNP [dm6]	G	A	3.765e^-4	0.83	SYNONYMOUS_CODING CG33123	TF binding site mE1_TFBS_cad
3R	25295267	3R_25295267_SNP [dm3] 3R_29469545_SNP [dm6]	T	C	3.766e^-4	0.83	INTRON Ptp99A
3L	15968290	3L_15968290_SNP [dm3] 3L_15975190_SNP [dm6]	A	T	3.769e^-4	0.83	UPSTREAM CG17026 INTRON brm	TF binding site mE1_TFBS_HSA
3R	421156	3R_421156_SNP [dm3] 3R_4595434_SNP [dm6]	T	G	3.781e^-4	0.83	DOWNSTREAM CR44317 INTERGENIC
3R	5722939	3R_5722939_SNP [dm3] 3R_9897217_SNP [dm6]	G	A	3.781e^-4	0.83	INTRON Glut4EF
3L	5966799	3L_5966799_INS [dm3] 3L_5973699_INS [dm6]	T	TGGCAGAGTAAGCCCCT...	3.782e^-4	0.83	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	12695806	2L_12695806_SNP [dm3] 2L_12695806_SNP [dm6]	A	T	3.783e^-4	0.83	UPSTREAM PICK1 & 1 other DOWNSTREAM CG5781 INTRON PICK1
3R	10219205	3R_10219205_INS [dm3] 3R_14393483_INS [dm6]	A	AGGGAAATTAG...	3.785e^-4	0.83	SPLICE_SITE_REGION cv-c INTRON cv-c
X	6747202	X_6747202_SNP [dm3] X_6853169_SNP [dm6]	A	C	3.793e^-4	0.83	UPSTREAM CG14434 INTRON CG14434	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9774173	3L_9774173_SNP [dm3] 3L_9781073_SNP [dm6]	T	C	3.796e^-4	0.83	SPLICE_SITE_REGION CG8177 INTRON CG8177
3L	6756754	3L_6756754_SNP [dm3] 3L_6763654_SNP [dm6]	T	G	3.798e^-4	0.83	UPSTREAM CG32392 INTERGENIC	TF binding site mE1_TFBS_bab1
2L	16665443	2L_16665443_SNP [dm3] 2L_16665443_SNP [dm6]	C	T	3.803e^-4	0.83	NON_SYNONYMOUS_CODING Trpgamma	TF binding site mE1_TFBS_cad
2R	8777139	2R_8777139_INS [dm3] 2R_12889634_INS [dm6]	A	AA	3.804e^-4	0.83	INTRON vg	TF binding site BDTNP1_TFBS_da
3L	3789457	3L_3789457_SNP [dm3] 3L_3789457_SNP [dm6]	T	C	3.816e^-4	0.83	INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	16108084	3R_16108084_SNP [dm3] 3R_20282362_SNP [dm6]	G	T	3.825e^-4	0.83	INTRON cic
3R	13962838	3R_13962838_SNP [dm3] 3R_18137116_SNP [dm6]	G	A	3.830e^-4	0.83	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	10412131	X_10412131_SNP [dm3] X_10518098_SNP [dm6]	A	G	3.832e^-4	0.83	INTRON spri	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	11548763	3L_11548763_SNP [dm3] 3L_11555663_SNP [dm6]	T	A	3.835e^-4	0.83	INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15519829	X_15519829_SNP [dm3] X_15625796_SNP [dm6]	G	A	3.838e^-4	0.83	UTR_5_PRIME sog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	2060412	3L_2060412_SNP [dm3] 3L_2060412_SNP [dm6]	C	T	3.851e^-4	0.83	NON_SYNONYMOUS_CODING sls INTRON sls
X	10303787	X_10303787_SNP [dm3] X_10409754_SNP [dm6]	A	C	3.856e^-4	0.83	UTR_3_PRIME flw DOWNSTREAM CG32683
2R	15562174	2R_15562174_SNP [dm3] 2R_19674669_SNP [dm6]	T	C	3.859e^-4	0.83	INTERGENIC
3R	13452740	3R_13452740_SNP [dm3] 3R_17627018_SNP [dm6]	C	T	3.865e^-4	0.83	UPSTREAM CG14325 DOWNSTREAM AttD INTERGENIC
2R	6851457	2R_6851457_INS [dm3] 2R_10963952_INS [dm6]	A	AA	3.876e^-4	0.83	INTERGENIC
2R	13263857	2R_13263857_SNP [dm3] 2R_17376352_SNP [dm6]	A	G	3.885e^-4	0.83	UTR_3_PRIME mbl	TF binding site mE1_TFBS_kn
3L	6514023	3L_6514023_SNP [dm3] 3L_6520923_SNP [dm6]	C	T	3.893e^-4	0.83	INTRON sfl
X	9105087	X_9105087_SNP [dm3] X_9211054_SNP [dm6]	A	T	3.897e^-4	0.83	UPSTREAM CG12119 INTERGENIC
2R	9836521	2R_9836521_SNP [dm3] 2R_13949016_SNP [dm6]	T	C	3.897e^-4	0.83	SYNONYMOUS_CODING AGO1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	9802307	2R_9802307_SNP [dm3] 2R_13914802_SNP [dm6]	G	A	3.900e^-4	0.83	INTRON shot
3R	16534452	3R_16534452_SNP [dm3] 3R_20708730_SNP [dm6]	A	T	3.901e^-4	0.83	INTRON Oamb
3R	10211909	3R_10211909_SNP [dm3] 3R_14386187_SNP [dm6]	T	A	3.905e^-4	0.83	INTERGENIC
3R	26936588	3R_26936588_SNP [dm3] 3R_31110866_SNP [dm6]	C	T	3.906e^-4	0.83	INTERGENIC
3R	24749813	3R_24749813_SNP [dm3] 3R_28924091_SNP [dm6]	T	A	3.909e^-4	0.83	NON_SYNONYMOUS_CODING CG11828 DOWNSTREAM CG14521
3R	26879695	3R_26879695_SNP [dm3] 3R_31053973_SNP [dm6]	G	A	3.911e^-4	0.83	UPSTREAM l_3_03670 DOWNSTREAM dco INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3R	5722917	3R_5722917_SNP [dm3] 3R_9897195_SNP [dm6]	T	A	3.915e^-4	0.83	INTRON Glut4EF
X	18802557	X_18802557_SNP [dm3] X_18908524_SNP [dm6]	A	G	3.915e^-4	0.83	INTRON CG7378
2R	12132478	2R_12132478_SNP [dm3] 2R_16244973_SNP [dm6]	A	G	3.916e^-4	0.83	SYNONYMOUS_CODING CngA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9355412	3L_9355412_SNP [dm3] 3L_9362312_SNP [dm6]	C	T	3.933e^-4	0.83	SYNONYMOUS_CODING CG34456 DOWNSTREAM Klp67A & 1 other
3L	1316108	3L_1316108_SNP [dm3] 3L_1316108_SNP [dm6]	C	G	3.934e^-4	0.83	SYNONYMOUS_CODING CG9153	TF binding site mE1_TFBS_cad
X	14962297	X_14962297_SNP [dm3] X_15068264_SNP [dm6]	C	G	3.935e^-4	0.83	NON_SYNONYMOUS_CODING dob DOWNSTREAM Lsd-2
X	19209544	X_19209544_SNP [dm3] X_19315511_SNP [dm6]	C	A	3.937e^-4	0.83	INTRON out	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	7622936	X_7622936_SNP [dm3] X_7728903_SNP [dm6]	G	A	3.945e^-4	0.83	UTR_5_PRIME CG12155 UPSTREAM NELF-B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	25148598	3R_25148598_SNP [dm3] 3R_29322876_SNP [dm6]	G	C	3.946e^-4	0.83	INTERGENIC
3R	1107003	3R_1107003_SNP [dm3] 3R_5281281_SNP [dm6]	T	A	3.950e^-4	0.83	UPSTREAM mtd INTRON mtd
3R	25289851	3R_25289851_SNP [dm3] 3R_29464129_SNP [dm6]	A	G	3.953e^-4	0.83	INTRON Ptp99A	TF binding site mE1_TFBS_cad
2L	12401819	2L_12401819_DEL [dm3] 2L_12401819_DEL [dm6]	TG	T	3.962e^-4	0.83	UTR_3_PRIME Pkd2
2L	11552290	2L_11552290_SNP [dm3] 2L_11552290_SNP [dm6]	T	C	3.962e^-4	0.83	INTERGENIC
2R	16921250	2R_16921250_SNP [dm3] 2R_21033745_SNP [dm6]	T	G	3.964e^-4	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	414638	3R_414638_SNP [dm3] 3R_4588916_SNP [dm6]	A	T	3.966e^-4	0.83	INTRON CR45558
3L	2091797	3L_2091797_SNP [dm3] 3L_2091797_SNP [dm6]	A	G	3.975e^-4	0.83	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1316063	3L_1316063_SNP [dm3] 3L_1316063_SNP [dm6]	G	A	3.983e^-4	0.83	SYNONYMOUS_CODING CG9153	TF binding site mE1_TFBS_cad
3R	17721749	3R_17721749_SNP [dm3] 3R_21896027_SNP [dm6]	T	C	3.986e^-4	0.83	INTRON CG6678
3L	676970	3L_676970_SNP [dm3] 3L_676970_SNP [dm6]	C	A	3.989e^-4	0.83	DOWNSTREAM CG17129 INTERGENIC
3R	13442195	3R_13442195_SNP [dm3] 3R_17616473_SNP [dm6]	A	C	3.995e^-4	0.83	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_zfh1
2L	12479158	2L_12479158_SNP [dm3] 2L_12479158_SNP [dm6]	A	G	3.995e^-4	0.83	INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1901310	3L_1901310_SNP [dm3] 3L_1901310_SNP [dm6]	C	T	3.996e^-4	0.83	UTR_3_PRIME CG1887 INTRON CG1887	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA
2R	19208840	2R_19208840_SNP [dm3] 2R_23321317_SNP [dm6]	G	A	4.003e^-4	0.83	DOWNSTREAM CG30416 INTERGENIC
2R	14328176	2R_14328176_DEL [dm3] 2R_18440671_DEL [dm6]	TTT	T	4.004e^-4	0.83	UPSTREAM slim & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25574619	3R_25574619_SNP [dm3] 3R_29748897_SNP [dm6]	C	T	4.008e^-4	0.83	UTR_5_PRIME ATPsyn-gamma UPSTREAM yata & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	9987082	3L_9987082_SNP [dm3] 3L_9993982_SNP [dm6]	T	A	4.013e^-4	0.83	INTRON dpr6
3L	9987655	3L_9987655_SNP [dm3] 3L_9994555_SNP [dm6]	A	C	4.013e^-4	0.83	INTRON dpr6
3R	26913678	3R_26913678_SNP [dm3] 3R_31087956_SNP [dm6]	G	C	4.015e^-4	0.83	INTERGENIC
2L	12479161	2L_12479161_SNP [dm3] 2L_12479161_SNP [dm6]	G	A	4.017e^-4	0.83	INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	1125483	3R_1125483_SNP [dm3] 3R_5299761_SNP [dm6]	G	A	4.021e^-4	0.83	UPSTREAM mtd & 1 other INTRON mtd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2R	9201730	2R_9201730_SNP [dm3] 2R_13314225_SNP [dm6]	T	C	4.021e^-4	0.83	INTERGENIC
3R	17252994	3R_17252994_SNP [dm3] 3R_21427272_SNP [dm6]	A	G	4.028e^-4	0.83	INTRON lbl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	7118834	2L_7118834_SNP [dm3] 2L_7118834_SNP [dm6]	T	A	4.037e^-4	0.83	INTRON Pvf3	TF binding site mE1_TFBS_HSA
3R	13429279	3R_13429279_SNP [dm3] 3R_17603557_SNP [dm6]	T	A	4.038e^-4	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5607783	3L_5607783_SNP [dm3] 3L_5614683_SNP [dm6]	A	T	4.038e^-4	0.83	INTERGENIC
2L	18929971	2L_18929971_SNP [dm3] 2L_18929971_SNP [dm6]	T	A	4.046e^-4	0.83	INTRON ssp3
2L	10050217	2L_10050217_SNP [dm3] 2L_10050217_SNP [dm6]	A	G	4.047e^-4	0.83	NON_SYNONYMOUS_CODING CG33301	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	16170690	3R_16170690_SNP [dm3] 3R_20344968_SNP [dm6]	G	T	4.048e^-4	0.83	INTERGENIC
3R	294145	3R_294145_SNP [dm3] 3R_4468423_SNP [dm6]	C	T	4.049e^-4	0.83	INTRON CG31523	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2L	19094447	2L_19094447_SNP [dm3] 2L_19094447_SNP [dm6]	C	T	4.051e^-4	0.83	INTRON Lim3
3R	26878414	3R_26878414_SNP [dm3] 3R_31052692_SNP [dm6]	C	T	4.052e^-4	0.83	UTR_3_PRIME l_3_03670 DOWNSTREAM Aph-4	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	7214517	X_7214517_SNP [dm3] X_7320484_SNP [dm6]	T	G	4.056e^-4	0.83	INTRON CR44357 & 2 others	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9694363	3L_9694363_SNP [dm3] 3L_9701263_SNP [dm6]	C	T	4.057e^-4	0.83	SYNONYMOUS_CODING CG6761 DOWNSTREAM UbcD4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6949002	3L_6949002_SNP [dm3] 3L_6955902_SNP [dm6]	T	A	4.062e^-4	0.83	UTR_5_PRIME CG10077 UPSTREAM CG9948 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	6770807	3L_6770807_SNP [dm3] 3L_6777707_SNP [dm6]	T	C	4.063e^-4	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15882708	3L_15882708_SNP [dm3] 3L_15889608_SNP [dm6]	T	G	4.071e^-4	0.83	INTRON pHCl
3R	24426402	3R_24426402_INS [dm3] 3R_28600680_INS [dm6]	G	GTACG	4.071e^-4	0.83	UPSTREAM snoRNA:Psi28S-3405a INTRON Hrb98DE	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	3502332	2L_3502332_INS [dm3] 2L_3502332_INS [dm6]	T	CA	4.072e^-4	0.83	INTRON tim
2L	17782815	2L_17782815_SNP [dm3] 2L_17782815_SNP [dm6]	C	T	4.088e^-4	0.83	INTERGENIC
3L	767605	3L_767605_SNP [dm3] 3L_767605_SNP [dm6]	C	G	4.091e^-4	0.83	INTERGENIC
3R	7822067	3R_7822067_SNP [dm3] 3R_11996345_SNP [dm6]	T	G	4.095e^-4	0.83	INTRON Tk
3R	26481739	3R_26481739_SNP [dm3] 3R_30656017_SNP [dm6]	A	G	4.108e^-4	0.83	INTERGENIC
2L	13680436	2L_13680436_SNP [dm3] 2L_13680436_SNP [dm6]	C	A	4.113e^-4	0.83	INTRON CG31814	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7898833	2L_7898833_SNP [dm3] 2L_7898833_SNP [dm6]	C	T	4.114e^-4	0.83	INTRON Snoo	TF binding site mE1_TFBS_cad
2R	17096820	2R_17096820_SNP [dm3] 2R_21209315_SNP [dm6]	T	C	4.116e^-4	0.83	UTR_3_PRIME Glycogenin INTRON CG44245 & 1 other
3L	791513	3L_791513_SNP [dm3] 3L_791513_SNP [dm6]	C	A	4.116e^-4	0.83	INTERGENIC
3L	10535721	3L_10535721_SNP [dm3] 3L_10542621_SNP [dm6]	T	A	4.122e^-4	0.83	INTRON A2bp1
3L	9987260	3L_9987260_SNP [dm3] 3L_9994160_SNP [dm6]	T	A	4.124e^-4	0.83	INTRON dpr6
3L	3715319	3L_3715319_SNP [dm3] 3L_3715319_SNP [dm6]	T	A	4.132e^-4	0.83	UTR_3_PRIME CG32264 DOWNSTREAM CG43089
3L	11305657	3L_11305657_SNP [dm3] 3L_11312557_SNP [dm6]	C	T	4.138e^-4	0.83	SYNONYMOUS_CODING CG7573
3R	21013047	3R_21013047_SNP [dm3] 3R_25187325_SNP [dm6]	T	C	4.141e^-4	0.83	INTRON lobo & 1 other	TF binding site BDTNP1_TFBS_dl
3R	17651608	3R_17651608_SNP [dm3] 3R_21825886_SNP [dm6]	C	T	4.149e^-4	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv
2R	17755221	2R_17755221_SNP [dm3] 2R_21867716_SNP [dm6]	T	C	4.151e^-4	0.83	UPSTREAM comr INTERGENIC
2R	15135135	2R_15135135_INS [dm3] 2R_19247630_INS [dm6]	A	AAGA	4.153e^-4	0.83	INTERGENIC
2R	9312457	2R_9312457_SNP [dm3] 2R_13424952_SNP [dm6]	C	A	4.156e^-4	0.83	UPSTREAM CG42321 INTRON CG42321	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	2484847	3L_2484847_SNP [dm3] 3L_2484847_SNP [dm6]	T	G	4.165e^-4	0.83	INTRON CG45186	TF binding site mE1_TFBS_cad
2R	8781394	2R_8781394_SNP [dm3] 2R_12893889_SNP [dm6]	A	T	4.170e^-4	0.83	INTRON vg
3L	11095888	3L_11095888_SNP [dm3] 3L_11102788_SNP [dm6]	G	A	4.172e^-4	0.83	SPLICE_SITE_REGION Elo68alpha DOWNSTREAM CG32071 INTRON Elo68alpha
3R	18395724	3R_18395724_SNP [dm3] 3R_22570002_SNP [dm6]	G	C	4.174e^-4	0.83	UPSTREAM CG33110 INTERGENIC
3L	14557276	3L_14557276_SNP [dm3] 3L_14564176_SNP [dm6]	T	C	4.180e^-4	0.83	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	23055641	3R_23055641_SNP [dm3] 3R_27229919_SNP [dm6]	A	T	4.184e^-4	0.83	SYNONYMOUS_CODING CG31064 UPSTREAM CG42814 DOWNSTREAM CG31064	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8368538	X_8368538_SNP [dm3] X_8474505_SNP [dm6]	A	C	4.192e^-4	0.83	NON_SYNONYMOUS_CODING Cp7Fb INTRON CG33223 & 1 other
2L	14010939	2L_14010939_SNP [dm3] 2L_14010939_SNP [dm6]	C	T	4.194e^-4	0.83	UPSTREAM tRNA:Q:34E INTERGENIC
2L	16675276	2L_16675276_SNP [dm3] 2L_16675276_SNP [dm6]	A	G	4.198e^-4	0.83	INTRON Trpgamma
X	21306418	X_21306418_SNP [dm3] X_21435391_SNP [dm6]	C	A	4.202e^-4	0.83	INTRON CG42343	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14220717	3L_14220717_SNP [dm3] 3L_14227617_SNP [dm6]	C	T	4.203e^-4	0.83	INTRON nuf
3L	768586	3L_768586_SNP [dm3] 3L_768586_SNP [dm6]	T	G	4.206e^-4	0.83	UPSTREAM tRNA:CR32480 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	16251702	3R_16251702_SNP [dm3] 3R_20425980_SNP [dm6]	A	G	4.211e^-4	0.83	INTRON Gfrl
2R	6015523	2R_6015523_SNP [dm3] 2R_10128018_SNP [dm6]	T	A	4.222e^-4	0.83	INTRON gem	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	18580972	3R_18580972_SNP [dm3] 3R_22755250_SNP [dm6]	A	G	4.225e^-4	0.83	UTR_5_PRIME CG7029 INTRON Usp12-46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	13435468	3R_13435468_SNP [dm3] 3R_17609746_SNP [dm6]	T	C	4.231e^-4	0.83	SYNONYMOUS_CODING CG14329
2L	4744863	2L_4744863_SNP [dm3] 2L_4744863_SNP [dm6]	C	T	4.241e^-4	0.83	INTRON CG15630
2R	10803034	2R_10803034_SNP [dm3] 2R_14915529_SNP [dm6]	A	T	4.241e^-4	0.83	INTRON CG10249
2L	3522723	2L_3522723_SNP [dm3] 2L_3522723_SNP [dm6]	G	T	4.250e^-4	0.83	SYNONYMOUS_CODING Sr-CIV DOWNSTREAM CG8851
3R	13442154	3R_13442154_SNP [dm3] 3R_17616432_SNP [dm6]	T	A	4.251e^-4	0.83	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_zfh1
3L	7120820	3L_7120820_SNP [dm3] 3L_7127720_SNP [dm6]	A	G	4.251e^-4	0.83	SYNONYMOUS_CODING BBS1 DOWNSTREAM CG8629	TF binding site mE1_TFBS_chinmo
3L	7511598	3L_7511598_SNP [dm3] 3L_7518498_SNP [dm6]	A	T	4.257e^-4	0.83	UPSTREAM ltl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	10265448	2R_10265448_INS [dm3] 2R_14377943_INS [dm6]	C	CC	4.258e^-4	0.83	UPSTREAM Dh44-R1 INTERGENIC
3R	25148587	3R_25148587_SNP [dm3] 3R_29322865_SNP [dm6]	T	C	4.262e^-4	0.83	INTERGENIC
3L	9987440	3L_9987440_SNP [dm3] 3L_9994340_SNP [dm6]	A	G	4.264e^-4	0.83	INTRON dpr6
3L	6708352	3L_6708352_SNP [dm3] 3L_6715252_SNP [dm6]	G	A	4.268e^-4	0.83	SYNONYMOUS_CODING ple	TF binding site mE1_TFBS_chinmo
2R	20185577	2R_20185577_SNP [dm3] 2R_24298054_SNP [dm6]	A	G	4.268e^-4	0.83	UTR_3_PRIME CG3394	TF binding site mE1_TFBS_chinmo
3R	242575	3R_242575_SNP [dm3] 3R_4416853_SNP [dm6]	G	T	4.276e^-4	0.83	SYNONYMOUS_CODING CG31528 INTRON CG32944	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5438823	3R_5438823_SNP [dm3] 3R_9613101_SNP [dm6]	C	T	4.280e^-4	0.83	INTRON CG8312
3R	7822048	3R_7822048_SNP [dm3] 3R_11996326_SNP [dm6]	A	T	4.286e^-4	0.83	INTRON Tk
2L	16174245	2L_16174245_SNP [dm3] 2L_16174245_SNP [dm6]	T	C	4.300e^-4	0.83	INTRON Ca-alpha1D
3L	12522462	3L_12522462_SNP [dm3] 3L_12529362_SNP [dm6]	T	C	4.302e^-4	0.83	INTRON nst	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3974362	2L_3974362_SNP [dm3] 2L_3974362_SNP [dm6]	G	C	4.307e^-4	0.83	INTRON fred
3L	6368414	3L_6368414_SNP [dm3] 3L_6375314_SNP [dm6]	A	G	4.307e^-4	0.83	INTERGENIC
2R	15812176	2R_15812176_SNP [dm3] 2R_19924671_SNP [dm6]	C	T	4.307e^-4	0.83	DOWNSTREAM CR44626 INTERGENIC	TF binding site mE1_TFBS_cad
3L	18958621	3L_18958621_DEL [dm3] 3L_18965521_DEL [dm6]	GATTTTTAA	G	4.310e^-4	0.83	INTERGENIC
3R	24425394	3R_24425394_SNP [dm3] 3R_28599672_SNP [dm6]	T	C	4.310e^-4	0.83	UPSTREAM Hrb98DE & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	6941793	2L_6941793_SNP [dm3] 2L_6941793_SNP [dm6]	T	C	4.311e^-4	0.83	INTRON CG18304	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	18113875	2L_18113875_INS [dm3] 2L_18113875_INS [dm6]	A	AA	4.312e^-4	0.83	UPSTREAM CG44476 & 1 other INTERGENIC	transposable element FlyBase
2R	17001235	2R_17001235_SNP [dm3] 2R_21113730_SNP [dm6]	T	G	4.322e^-4	0.83	INTRON ktub
2L	12855462	2L_12855462_SNP [dm3] 2L_12855462_SNP [dm6]	C	T	4.323e^-4	0.83	INTERGENIC
2L	6300396	2L_6300396_SNP [dm3] 2L_6300396_SNP [dm6]	C	T	4.327e^-4	0.83	INTRON Ddr
3R	14956114	3R_14956114_SNP [dm3] 3R_19130392_SNP [dm6]	C	T	4.352e^-4	0.83	SYNONYMOUS_CODING CG6040	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9286029	2L_9286029_SNP [dm3] 2L_9286029_SNP [dm6]	A	G	4.355e^-4	0.83	INTRON Ggamma30A
3R	16534389	3R_16534389_SNP [dm3] 3R_20708667_SNP [dm6]	C	T	4.356e^-4	0.83	INTRON Oamb
2L	1049921	2L_1049921_SNP [dm3] 2L_1049921_SNP [dm6]	G	T	4.359e^-4	0.83	UTR_3_PRIME S
2L	10154644	2L_10154644_SNP [dm3] 2L_10154644_SNP [dm6]	G	A	4.359e^-4	0.83	INTRON CG44153 & 1 other
2R	20016938	2R_20016938_SNP [dm3] 2R_24129415_SNP [dm6]	C	A	4.371e^-4	0.83	SYNONYMOUS_CODING tamo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18392536	3R_18392536_SNP [dm3] 3R_22566814_SNP [dm6]	T	A	4.372e^-4	0.83	INTERGENIC
2R	10829271	2R_10829271_SNP [dm3] 2R_14941766_SNP [dm6]	C	A	4.375e^-4	0.83	UPSTREAM CG10257 INTERGENIC
3R	19220536	3R_19220536_SNP [dm3] 3R_23394814_SNP [dm6]	A	G	4.375e^-4	0.83	INTERGENIC
2R	13076561	2R_13076561_SNP [dm3] 2R_17189056_SNP [dm6]	C	G	4.379e^-4	0.83	UPSTREAM CR45323 EXON CR44389
2L	3377853	2L_3377853_SNP [dm3] 2L_3377853_SNP [dm6]	T	A	4.386e^-4	0.83	INTRON Ptpa	TF binding site mE1_TFBS_sens
3R	19354461	3R_19354461_SNP [dm3] 3R_23528739_SNP [dm6]	G	A	4.387e^-4	0.83	SYNONYMOUS_CODING CG10175 UTR_5_PRIME CG10175	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	17335722	X_17335722_SNP [dm3] X_17441689_SNP [dm6]	T	G	4.400e^-4	0.83	INTRON CG12994
3L	2260288	3L_2260288_SNP [dm3] 3L_2260288_SNP [dm6]	G	A	4.415e^-4	0.83	SYNONYMOUS_CODING oxt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	7847998	2R_7847998_SNP [dm3] 2R_11960493_SNP [dm6]	C	A	4.419e^-4	0.83	INTRON CG13188
3L	9987122	3L_9987122_SNP [dm3] 3L_9994022_SNP [dm6]	A	G	4.425e^-4	0.83	INTRON dpr6
3L	6494113	3L_6494113_SNP [dm3] 3L_6501013_SNP [dm6]	G	A	4.427e^-4	0.83	INTRON sfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
3L	10489954	3L_10489954_SNP [dm3] 3L_10496854_SNP [dm6]	C	A	4.428e^-4	0.83	INTRON A2bp1
X	15659530	X_15659530_SNP [dm3] X_15765497_SNP [dm6]	C	A	4.434e^-4	0.83	UTR_3_PRIME CG8952 INTRON CG17209
X	10822100	X_10822100_SNP [dm3] X_10928067_SNP [dm6]	G	T	4.435e^-4	0.83	SYNONYMOUS_CODING CG2145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14566901	3L_14566901_SNP [dm3] 3L_14573801_SNP [dm6]	G	T	4.443e^-4	0.83	INTERGENIC
3R	16533849	3R_16533849_SNP [dm3] 3R_20708127_SNP [dm6]	A	G	4.453e^-4	0.83	INTRON Oamb
2L	17863653	2L_17863653_SNP [dm3] 2L_17863653_SNP [dm6]	C	A	4.454e^-4	0.83	INTRON CadN2
3R	19491798	3R_19491798_SNP [dm3] 3R_23666076_SNP [dm6]	G	C	4.461e^-4	0.83	INTRON CG31145	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	766459	3L_766459_SNP [dm3] 3L_766459_SNP [dm6]	C	T	4.464e^-4	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	14354741	3L_14354741_SNP [dm3] 3L_14361641_SNP [dm6]	T	C	4.467e^-4	0.83	INTRON fz
3R	25148584	3R_25148584_SNP [dm3] 3R_29322862_SNP [dm6]	A	C	4.467e^-4	0.83	INTERGENIC
2R	9381136	2R_9381136_SNP [dm3] 2R_13493631_SNP [dm6]	A	G	4.467e^-4	0.83	INTRON bbc
3R	16059514	3R_16059514_SNP [dm3] 3R_20233792_SNP [dm6]	G	A	4.468e^-4	0.83	INTRON Nlg4
3R	14108033	3R_14108033_SNP [dm3] 3R_18282311_SNP [dm6]	T	G	4.474e^-4	0.83	UTR_3_PRIME eIF-1A DOWNSTREAM CG14312
2R	14216715	2R_14216715_INS [dm3] 2R_18329210_INS [dm6]	A	AGTGTTAA	4.481e^-4	0.83	INTRON sbb
3R	25574053	3R_25574053_SNP [dm3] 3R_29748331_SNP [dm6]	A	G	4.483e^-4	0.83	SYNONYMOUS_CODING ATPsyn-gamma UPSTREAM yata DOWNSTREAM IntS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	17863745	2L_17863745_DEL [dm3] 2L_17863745_DEL [dm6]	TAAATAAAGTCTAGGTTGTG...	T	4.484e^-4	0.83	INTRON CadN2
3L	8776574	3L_8776574_SNP [dm3] 3L_8783474_SNP [dm6]	G	A	4.492e^-4	0.83	INTRON Fhos
2L	5692197	2L_5692197_SNP [dm3] 2L_5692197_SNP [dm6]	G	T	4.496e^-4	0.83	UPSTREAM CR44820 DOWNSTREAM CR44819 INTERGENIC
3R	17721739	3R_17721739_SNP [dm3] 3R_21896017_SNP [dm6]	A	T	4.499e^-4	0.83	INTRON CG6678
2R	20384295	2R_20384295_SNP [dm3] 2R_24496772_SNP [dm6]	A	G	4.515e^-4	0.83	SYNONYMOUS_CODING Crtp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17143786	3R_17143786_SNP [dm3] 3R_21318064_SNP [dm6]	T	C	4.535e^-4	0.83	DOWNSTREAM CG16791 & 1 other INTERGENIC
2R	13593399	2R_13593399_SNP [dm3] 2R_17705894_SNP [dm6]	T	C	4.537e^-4	0.83	INTRON CG6424
3R	24749939	3R_24749939_SNP [dm3] 3R_28924217_SNP [dm6]	A	G	4.542e^-4	0.83	NON_SYNONYMOUS_CODING CG11828 DOWNSTREAM CG14521
3R	24749980	3R_24749980_SNP [dm3] 3R_28924258_SNP [dm6]	G	A	4.545e^-4	0.83	SYNONYMOUS_CODING CG11828 DOWNSTREAM CG14521
3R	13647752	3R_13647752_SNP [dm3] 3R_17822030_SNP [dm6]	T	G	4.549e^-4	0.83	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	20427243	3L_20427243_SNP [dm3] 3L_20434143_SNP [dm6]	G	T	4.551e^-4	0.83	NON_SYNONYMOUS_CODING Psn DOWNSTREAM mRpL15
2L	3629100	2L_3629100_SNP [dm3] 2L_3629100_SNP [dm6]	T	C	4.556e^-4	0.83	INTRON for	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	24363634	3R_24363634_SNP [dm3] 3R_28537912_SNP [dm6]	T	G	4.557e^-4	0.83	INTRON Ppn
3L	15729090	3L_15729090_SNP [dm3] 3L_15735990_SNP [dm6]	G	A	4.560e^-4	0.83	INTERGENIC
3L	6756727	3L_6756727_SNP [dm3] 3L_6763627_SNP [dm6]	T	C	4.581e^-4	0.83	UPSTREAM CG32392 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	6756713	3L_6756713_SNP [dm3] 3L_6763613_SNP [dm6]	T	A	4.582e^-4	0.83	UPSTREAM CG32392 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	20482178	3L_20482178_SNP [dm3] 3L_20489078_SNP [dm6]	T	C	4.583e^-4	0.83	INTRON ZnT77C
3R	14368897	3R_14368897_SNP [dm3] 3R_18543175_SNP [dm6]	C	A	4.590e^-4	0.83	INTRON fru
2L	12479166	2L_12479166_SNP [dm3] 2L_12479166_SNP [dm6]	T	C	4.598e^-4	0.83	INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25887149	3R_25887149_SNP [dm3] 3R_30061427_SNP [dm6]	G	C	4.603e^-4	0.83	INTRON sima	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	18802447	X_18802447_SNP [dm3] X_18908414_SNP [dm6]	C	A	4.604e^-4	0.83	INTRON CG7378
3R	5912287	3R_5912287_SNP [dm3] 3R_10086565_SNP [dm6]	G	A	4.612e^-4	0.83	INTRON CR45054	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3R	12566913	3R_12566913_SNP [dm3] 3R_16741191_SNP [dm6]	C	A	4.615e^-4	0.83	DOWNSTREAM bxd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19707541	2R_19707541_SNP [dm3] 2R_23820018_SNP [dm6]	A	T	4.615e^-4	0.83	UPSTREAM CG5549 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	12813943	2L_12813943_SNP [dm3] 2L_12813943_SNP [dm6]	C	T	4.616e^-4	0.83	INTERGENIC	TF binding site mE1_TFBS_cad
X	18382068	X_18382068_SNP [dm3] X_18488035_SNP [dm6]	C	G	4.631e^-4	0.83	INTRON CG15046	TF binding site mE1_TFBS_chinmo
X	3317036	X_3317036_SNP [dm3] X_3423003_SNP [dm6]	C	A	4.632e^-4	0.83	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14174751	2R_14174751_SNP [dm3] 2R_18287246_SNP [dm6]	G	T	4.632e^-4	0.83	SYNONYMOUS_CODING sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26665644	3R_26665644_SNP [dm3] 3R_30839922_SNP [dm6]	T	C	4.634e^-4	0.83	NON_SYNONYMOUS_CODING CG15544	TF binding site mE1_TFBS_cad
2R	14003561	2R_14003561_SNP [dm3] 2R_18116056_SNP [dm6]	A	G	4.635e^-4	0.83	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	19372467	2R_19372467_SNP [dm3] 2R_23484944_SNP [dm6]	G	A	4.635e^-4	0.83	INTRON CG43795
X	9566849	X_9566849_SNP [dm3] X_9672816_SNP [dm6]	T	A	4.637e^-4	0.83	INTRON nej	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	17443383	2L_17443383_SNP [dm3] 2L_17443383_SNP [dm6]	T	C	4.640e^-4	0.83	INTRON dl	TF binding site BDTNP1_TFBS_dl
3R	15216542	3R_15216542_SNP [dm3] 3R_19390820_SNP [dm6]	A	G	4.643e^-4	0.83	SPLICE_SITE_REGION CG18493 SYNONYMOUS_CODING CG18493 DOWNSTREAM CG3734 INTRON Ino80	TF binding site mE1_TFBS_sens
X	13143946	X_13143946_DEL [dm3] X_13249913_DEL [dm6]	ATG	A	4.649e^-4	0.83	INTRON mew	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_twi
2L	14015014	2L_14015014_SNP [dm3] 2L_14015014_SNP [dm6]	G	C	4.653e^-4	0.83	INTRON bgm

By genomic position
Variant impact
Gene name

Wolbachia_Map_Reads phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results