DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.430e^-7)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2410 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	6245013	2L_6245013_SNP [dm3] 2L_6245013_SNP [dm6]	C	A	4.491e^-7	0.312	INTERGENIC
3R	23937052	3R_23937052_SNP [dm3] 3R_28111330_SNP [dm6]	C	G	7.719e^-7	0.312	INTERGENIC
3R	23937038	3R_23937038_SNP [dm3] 3R_28111316_SNP [dm6]	T	G	7.758e^-7	0.312	INTERGENIC
3L	2835271	3L_2835271_SNP [dm3] 3L_2835271_SNP [dm6]	T	A	1.001e^-6	0.312	INTRON CG43444
3L	2424179	3L_2424179_DEL [dm3] 3L_2424179_DEL [dm6]	TT	T	1.070e^-6	0.312	INTRON CG45186
3R	4677071	3R_4677071_SNP [dm3] 3R_8851349_SNP [dm6]	G	A	1.075e^-6	0.312	INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3615107	X_3615107_SNP [dm3] X_3721074_SNP [dm6]	G	A	1.736e^-6	0.312	INTRON tlk	TF binding site BDTNP1_TFBS_dl
2L	15734504	2L_15734504_SNP [dm3] 2L_15734504_SNP [dm6]	C	T	1.891e^-6	0.312	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
X	3615088	X_3615088_SNP [dm3] X_3721055_SNP [dm6]	G	T	1.906e^-6	0.312	INTRON tlk	TF binding site BDTNP1_TFBS_dl
X	3617257	X_3617257_SNP [dm3] X_3723224_SNP [dm6]	C	A	1.929e^-6	0.312	INTRON tlk	TF binding site BDTNP1_TFBS_dl
X	3615106	X_3615106_SNP [dm3] X_3721073_SNP [dm6]	A	G	2.191e^-6	0.312	INTRON tlk	TF binding site BDTNP1_TFBS_dl
2L	7440910	2L_7440910_SNP [dm3] 2L_7440910_SNP [dm6]	G	T	2.490e^-6	0.312	UTR_5_PRIME CG5973 INTRON CG5973
3R	14678071	3R_14678071_SNP [dm3] 3R_18852349_SNP [dm6]	G	T	2.604e^-6	0.312	UPSTREAM CG31226 INTERGENIC
3L	3576742	3L_3576742_SNP [dm3] 3L_3576742_SNP [dm6]	C	T	2.644e^-6	0.312	INTRON Eip63E
3R	14678909	3R_14678909_DEL [dm3] 3R_18853187_DEL [dm6]	CC	C	2.699e^-6	0.312	INTERGENIC
2L	17048510	2L_17048510_SNP [dm3] 2L_17048510_SNP [dm6]	T	G	2.751e^-6	0.312	UPSTREAM CG15136 INTERGENIC
3R	24130310	3R_24130310_SNP [dm3] 3R_28304588_SNP [dm6]	T	C	2.829e^-6	0.312	START_GAINED CG12516 UTR_5_PRIME CG12516
3R	12903335	3R_12903335_SNP [dm3] 3R_17077613_SNP [dm6]	A	G	3.786e^-6	0.395	INTRON Keap1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
X	3617480	X_3617480_SNP [dm3] X_3723447_SNP [dm6]	T	C	4.305e^-6	0.425	INTRON tlk	TF binding site BDTNP1_TFBS_dl
2L	3267116	2L_3267116_SNP [dm3] 2L_3267116_SNP [dm6]	A	T	4.754e^-6	0.446	INTERGENIC
3R	14543660	3R_14543660_SNP [dm3] 3R_18717938_SNP [dm6]	A	G	5.289e^-6	0.472	UTR_3_PRIME VAChT INTRON Cha
3L	9808756	3L_9808756_SNP [dm3] 3L_9815656_SNP [dm6]	A	T	6.721e^-6	0.573	UPSTREAM CG43897 INTRON CG43897
3L	10760378	3L_10760378_SNP [dm3] 3L_10767278_SNP [dm6]	A	T	7.138e^-6	0.582	INTERGENIC
3L	9344968	3L_9344968_SNP [dm3] 3L_9351868_SNP [dm6]	G	C	7.503e^-6	0.586	DOWNSTREAM PGRP-LF INTRON UGP
X	5855639	X_5855639_SNP [dm3] X_5961606_SNP [dm6]	T	A	8.419e^-6	0.632	SYNONYMOUS_CODING fs_1_M3
X	3617340	X_3617340_SNP [dm3] X_3723307_SNP [dm6]	T	C	9.357e^-6	0.647	INTRON tlk	TF binding site BDTNP1_TFBS_dl
3L	9344969	3L_9344969_SNP [dm3] 3L_9351869_SNP [dm6]	A	G	1.113e^-5	0.647	DOWNSTREAM PGRP-LF INTRON UGP
3R	19565253	3R_19565253_SNP [dm3] 3R_23739531_SNP [dm6]	C	T	1.136e^-5	0.647	INTRON Hmgcr
2L	5878808	2L_5878808_SNP [dm3] 2L_5878808_SNP [dm6]	G	A	1.165e^-5	0.647	INTRON rau	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9416993	2L_9416993_SNP [dm3] 2L_9416993_SNP [dm6]	T	A	1.178e^-5	0.647	INTRON Mco1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	9344973	3L_9344973_SNP [dm3] 3L_9351873_SNP [dm6]	G	T	1.263e^-5	0.647	DOWNSTREAM PGRP-LF INTRON UGP
3L	9344978	3L_9344978_SNP [dm3] 3L_9351878_SNP [dm6]	T	A	1.265e^-5	0.647	DOWNSTREAM PGRP-LF INTRON UGP
3L	15825028	3L_15825028_SNP [dm3] 3L_15831928_SNP [dm6]	A	T	1.277e^-5	0.647	UTR_3_PRIME dbo UPSTREAM CG12713 DOWNSTREAM dbo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	5403099	2L_5403099_SNP [dm3] 2L_5403099_SNP [dm6]	A	T	1.300e^-5	0.647	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	5403108	2L_5403108_SNP [dm3] 2L_5403108_SNP [dm6]	C	A	1.300e^-5	0.647	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	9916555	2R_9916555_SNP [dm3] 2R_14029050_SNP [dm6]	C	T	1.317e^-5	0.647	NON_SYNONYMOUS_CODING CG18371 INTRON mam
2L	4336150	2L_4336150_SNP [dm3] 2L_4336150_SNP [dm6]	T	G	1.371e^-5	0.647	INTRON Atet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9344980	3L_9344980_SNP [dm3] 3L_9351880_SNP [dm6]	G	A	1.432e^-5	0.647	DOWNSTREAM PGRP-LF INTRON UGP
3R	5806070	3R_5806070_SNP [dm3] 3R_9980348_SNP [dm6]	T	A	1.437e^-5	0.647	INTRON Glut4EF
3R	10590302	3R_10590302_SNP [dm3] 3R_14764580_SNP [dm6]	G	T	1.450e^-5	0.647	INTRON jvl
3R	1927929	3R_1927929_SNP [dm3] 3R_6102207_SNP [dm6]	A	G	1.453e^-5	0.647	EXON CR44929
2L	11982032	2L_11982032_SNP [dm3] 2L_11982032_SNP [dm6]	A	T	1.580e^-5	0.647	SYNONYMOUS_CODING CG16965
2L	14236437	2L_14236437_INS [dm3] 2L_14236437_INS [dm6]	G	AAAGCACATTTTACACTGTC...	1.643e^-5	0.647	DOWNSTREAM CR44728 INTERGENIC
X	10185840	X_10185840_SNP [dm3] X_10291807_SNP [dm6]	G	T	1.657e^-5	0.647	INTRON alpha-Man-I
2L	2880132	2L_2880132_SNP [dm3] 2L_2880132_SNP [dm6]	G	A	1.658e^-5	0.647	SYNONYMOUS_CODING betaggt-II DOWNSTREAM NTPase	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	3267295	2L_3267295_SNP [dm3] 2L_3267295_SNP [dm6]	A	T	1.661e^-5	0.647	UPSTREAM CR44484 INTERGENIC
3R	14676984	3R_14676984_SNP [dm3] 3R_18851262_SNP [dm6]	C	T	1.756e^-5	0.647	UPSTREAM CR45633 DOWNSTREAM CG31226 INTERGENIC
3L	9344982	3L_9344982_SNP [dm3] 3L_9351882_SNP [dm6]	G	A	1.819e^-5	0.647	DOWNSTREAM PGRP-LF INTRON UGP
3L	14145464	3L_14145464_SNP [dm3] 3L_14152364_SNP [dm6]	A	C	1.823e^-5	0.647	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	5512470	3L_5512470_SNP [dm3] 3L_5519370_SNP [dm6]	C	T	1.870e^-5	0.647	INTRON Lkr
2R	17204093	2R_17204093_SNP [dm3] 2R_21316588_SNP [dm6]	A	C	1.870e^-5	0.647	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	15818261	3L_15818261_SNP [dm3] 3L_15825161_SNP [dm6]	G	A	1.944e^-5	0.647	UPSTREAM Dcp2 INTRON Dcp2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	7496901	3L_7496901_SNP [dm3] 3L_7503801_SNP [dm6]	T	A	2.006e^-5	0.647	INTERGENIC
X	10185982	X_10185982_SNP [dm3] X_10291949_SNP [dm6]	T	C	2.146e^-5	0.647	INTRON alpha-Man-I
3R	24138819	3R_24138819_SNP [dm3] 3R_28313097_SNP [dm6]	G	C	2.190e^-5	0.647	INTERGENIC	TF binding site mE1_TFBS_cad
2L	4011813	2L_4011813_SNP [dm3] 2L_4011813_SNP [dm6]	G	A	2.208e^-5	0.647	INTERGENIC
3L	2835279	3L_2835279_SNP [dm3] 3L_2835279_SNP [dm6]	A	T	2.209e^-5	0.647	INTRON CG43444
3R	5944856	3R_5944856_SNP [dm3] 3R_10119134_SNP [dm6]	A	G	2.234e^-5	0.647	NON_SYNONYMOUS_CODING CG3940
3L	2192677	3L_2192677_INS [dm3] 3L_2192677_INS [dm6]	C	CT	2.241e^-5	0.647	UPSTREAM CG5707 INTERGENIC
3L	7579199	3L_7579199_SNP [dm3] 3L_7586099_SNP [dm6]	C	G	2.279e^-5	0.647	SPLICE_SITE_REGION CG14838 SYNONYMOUS_CODING CG14838
2L	4514683	2L_4514683_SNP [dm3] 2L_4514683_SNP [dm6]	G	T	2.302e^-5	0.647	INTRON dp
X	3615145	X_3615145_SNP [dm3] X_3721112_SNP [dm6]	T	C	2.405e^-5	0.647	INTRON tlk	TF binding site BDTNP1_TFBS_dl
3L	2192681	3L_2192681_SNP [dm3] 3L_2192681_SNP [dm6]	T	A	2.418e^-5	0.647	UPSTREAM CG5707 INTERGENIC
2L	1714758	2L_1714758_SNP [dm3] 2L_1714758_SNP [dm6]	C	G	2.419e^-5	0.647	INTRON frtz	TF binding site mE1_TFBS_chinmo
3L	1320779	3L_1320779_SNP [dm3] 3L_1320779_SNP [dm6]	T	A	2.421e^-5	0.647	UPSTREAM Myo61F INTRON Myo61F
3L	2192611	3L_2192611_SNP [dm3] 3L_2192611_SNP [dm6]	C	A	2.451e^-5	0.647	UPSTREAM CG5707 INTERGENIC
2L	5592368	2L_5592368_SNP [dm3] 2L_5592368_SNP [dm6]	A	G	2.466e^-5	0.647	INTERGENIC
2R	20374772	2R_20374772_SNP [dm3] 2R_24487249_SNP [dm6]	T	C	2.492e^-5	0.647	INTRON CG13579	TF binding site mE1_TFBS_cad
3R	4676506	3R_4676506_SNP [dm3] 3R_8850784_SNP [dm6]	T	A	2.495e^-5	0.647	INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4906869	2L_4906869_DEL [dm3] 2L_4906869_DEL [dm6]	TACTACTACTTACT...	T	2.538e^-5	0.647	UPSTREAM CG2837 INTERGENIC
3L	9567598	3L_9567598_SNP [dm3] 3L_9574498_SNP [dm6]	C	T	2.607e^-5	0.647	INTRON CG42673
3L	5876508	3L_5876508_SNP [dm3] 3L_5883408_SNP [dm6]	C	T	2.660e^-5	0.647	SYNONYMOUS_CODING CG13287	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	7257030	2R_7257030_SNP [dm3] 2R_11369525_SNP [dm6]	G	A	2.664e^-5	0.647	SYNONYMOUS_CODING CG13204 DOWNSTREAM Tapdelta	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	9515186	2L_9515186_SNP [dm3] 2L_9515186_SNP [dm6]	G	A	2.664e^-5	0.647	INTRON CG33298
3L	2424172	3L_2424172_SNP [dm3] 3L_2424172_SNP [dm6]	C	T	2.723e^-5	0.647	INTRON CG45186
2L	4011868	2L_4011868_SNP [dm3] 2L_4011868_SNP [dm6]	C	T	2.725e^-5	0.647	INTERGENIC
X	4685359	X_4685359_SNP [dm3] X_4791326_SNP [dm6]	C	G	2.779e^-5	0.647	INTERGENIC
2L	3930095	2L_3930095_SNP [dm3] 2L_3930095_SNP [dm6]	G	C	2.787e^-5	0.647	INTRON fred
3R	24705381	3R_24705381_SNP [dm3] 3R_28879659_SNP [dm6]	T	C	2.788e^-5	0.647	SYNONYMOUS_CODING CG14523 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15195786	3R_15195786_SNP [dm3] 3R_19370064_SNP [dm6]	A	C	2.793e^-5	0.647	INTRON Ino80
3R	14676991	3R_14676991_DEL [dm3] 3R_18851269_DEL [dm6]	CG	T	2.815e^-5	0.647	UPSTREAM CR45633 DOWNSTREAM CG31226 INTERGENIC
2L	5403133	2L_5403133_SNP [dm3] 2L_5403133_SNP [dm6]	A	G	2.904e^-5	0.647	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	14543634	3R_14543634_SNP [dm3] 3R_18717912_SNP [dm6]	G	A	2.930e^-5	0.647	UTR_3_PRIME VAChT INTRON Cha
3R	24138878	3R_24138878_SNP [dm3] 3R_28313156_SNP [dm6]	G	T	2.957e^-5	0.647	INTERGENIC	TF binding site mE1_TFBS_cad
3L	2186226	3L_2186226_SNP [dm3] 3L_2186226_SNP [dm6]	G	T	2.976e^-5	0.647	SYNONYMOUS_CODING CG13810	TF binding site BDTNP1_TFBS_twi
3L	12306535	3L_12306535_SNP [dm3] 3L_12313435_SNP [dm6]	G	A	2.984e^-5	0.647	INTERGENIC
X	10186020	X_10186020_SNP [dm3] X_10291987_SNP [dm6]	A	T	3.015e^-5	0.647	INTRON alpha-Man-I
3L	6524221	3L_6524221_SNP [dm3] 3L_6531121_SNP [dm6]	G	A	3.047e^-5	0.647	SYNONYMOUS_CODING CG32396 INTRON sfl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	15758061	3L_15758061_INS [dm3] 3L_15764961_INS [dm6]	A	ACGA	3.074e^-5	0.647	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7496902	3L_7496902_SNP [dm3] 3L_7503802_SNP [dm6]	A	C	3.103e^-5	0.647	INTERGENIC
3L	2439565	3L_2439565_SNP [dm3] 3L_2439565_SNP [dm6]	G	C	3.248e^-5	0.662	SYNONYMOUS_CODING CG45186 UTR_5_PRIME CG45186	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15819384	3L_15819384_SNP [dm3] 3L_15826284_SNP [dm6]	A	G	3.307e^-5	0.662	SPLICE_SITE_DONOR Dcp2 UTR_5_PRIME Dcp2 UPSTREAM dbo INTRON Dcp2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	4546212	2L_4546212_SNP [dm3] 2L_4546212_SNP [dm6]	G	C	3.384e^-5	0.662	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9281728	2L_9281728_SNP [dm3] 2L_9281728_SNP [dm6]	T	C	3.432e^-5	0.662	INTRON Ggamma30A
X	10401495	X_10401495_SNP [dm3] X_10507462_SNP [dm6]	C	A	3.443e^-5	0.662	INTRON spri
2R	8345647	2R_8345647_SNP [dm3] 2R_12458142_SNP [dm6]	G	T	3.445e^-5	0.662	INTRON Lac	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24835273	3R_24835273_SNP [dm3] 3R_29009551_SNP [dm6]	C	A	3.469e^-5	0.662	UPSTREAM mir-4947 INTRON wat
2L	4501756	2L_4501756_SNP [dm3] 2L_4501756_SNP [dm6]	T	A	3.510e^-5	0.662	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10945098	2L_10945098_SNP [dm3] 2L_10945098_SNP [dm6]	A	G	3.514e^-5	0.662	INTRON dpr2
2L	5591753	2L_5591753_SNP [dm3] 2L_5591753_SNP [dm6]	A	G	3.556e^-5	0.662	INTERGENIC
2L	14459111	2L_14459111_SNP [dm3] 2L_14459111_SNP [dm6]	T	G	3.567e^-5	0.662	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
X	3609713	X_3609713_SNP [dm3] X_3715680_SNP [dm6]	A	G	3.673e^-5	0.669	INTRON Rala
2L	17593895	2L_17593895_SNP [dm3] 2L_17593895_SNP [dm6]	A	T	3.743e^-5	0.669	UPSTREAM Sytalpha INTRON Sytalpha
2L	11984276	2L_11984276_SNP [dm3] 2L_11984276_SNP [dm6]	C	T	3.777e^-5	0.669	DOWNSTREAM CG6686 INTRON CG16965
X	10272520	X_10272520_SNP [dm3] X_10378487_SNP [dm6]	T	C	3.786e^-5	0.669	NON_SYNONYMOUS_CODING CG32681 INTRON CG17841
3R	2637958	3R_2637958_SNP [dm3] 3R_6812236_SNP [dm6]	A	G	3.788e^-5	0.669	INTRON CR42651	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	2422969	3R_2422969_SNP [dm3] 3R_6597247_SNP [dm6]	A	G	3.837e^-5	0.669	SYNONYMOUS_CODING CG1138
2R	18208945	2R_18208945_SNP [dm3] 2R_22321440_SNP [dm6]	T	C	3.869e^-5	0.669	UPSTREAM CR44756 INTRON Gp150	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	13329359	2R_13329359_SNP [dm3] 2R_17441854_SNP [dm6]	A	G	3.941e^-5	0.669	SYNONYMOUS_CODING CG18467 INTRON EDTP
3R	26680265	3R_26680265_SNP [dm3] 3R_30854543_SNP [dm6]	A	T	3.965e^-5	0.669	DOWNSTREAM tll INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	19648117	2R_19648117_SNP [dm3] 2R_23760594_SNP [dm6]	G	T	3.969e^-5	0.669	INTRON CG9850
2L	5591933	2L_5591933_SNP [dm3] 2L_5591933_SNP [dm6]	G	A	3.993e^-5	0.669	INTERGENIC
3R	20936428	3R_20936428_SNP [dm3] 3R_25110706_SNP [dm6]	T	A	4.044e^-5	0.671	INTRON CG13650
X	3612688	X_3612688_SNP [dm3] X_3718655_SNP [dm6]	G	A	4.154e^-5	0.675	INTRON Rala	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12411288	3L_12411288_SNP [dm3] 3L_12418188_SNP [dm6]	G	C	4.179e^-5	0.675	UPSTREAM ArfGAP1 INTERGENIC	TF binding site mE1_TFBS_cnc
3R	11111295	3R_11111295_SNP [dm3] 3R_15285573_SNP [dm6]	C	T	4.189e^-5	0.675	UPSTREAM Tm1 INTRON Tm1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	10185991	X_10185991_SNP [dm3] X_10291958_SNP [dm6]	T	G	4.214e^-5	0.675	INTRON alpha-Man-I
X	13107584	X_13107584_SNP [dm3] X_13213551_SNP [dm6]	A	T	4.270e^-5	0.675	UTR_3_PRIME REG DOWNSTREAM mew	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12326118	2R_12326118_SNP [dm3] 2R_16438613_SNP [dm6]	T	A	4.282e^-5	0.675	INTERGENIC
2L	7336806	2L_7336806_SNP [dm3] 2L_7336806_SNP [dm6]	T	C	4.448e^-5	0.675	INTRON Wnt6
2L	9280115	2L_9280115_SNP [dm3] 2L_9280115_SNP [dm6]	A	T	4.553e^-5	0.675	INTRON Ggamma30A
2R	9249164	2R_9249164_SNP [dm3] 2R_13361659_SNP [dm6]	A	C	4.594e^-5	0.675	DOWNSTREAM CR45312 INTERGENIC
2L	5592995	2L_5592995_SNP [dm3] 2L_5592995_SNP [dm6]	C	G	4.595e^-5	0.675	INTERGENIC
3L	701711	3L_701711_SNP [dm3] 3L_701711_SNP [dm6]	T	A	4.600e^-5	0.675	INTERGENIC
3L	701713	3L_701713_INS [dm3] 3L_701713_INS [dm6]	G	GG	4.600e^-5	0.675	INTERGENIC
3L	701719	3L_701719_SNP [dm3] 3L_701719_SNP [dm6]	C	A	4.600e^-5	0.675	INTERGENIC
3L	1773058	3L_1773058_SNP [dm3] 3L_1773058_SNP [dm6]	C	T	4.621e^-5	0.675	SYNONYMOUS_CODING CG13933 UPSTREAM CR44351	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	5327119	X_5327119_SNP [dm3] X_5433086_SNP [dm6]	G	T	4.672e^-5	0.675	UPSTREAM CR44471 DOWNSTREAM CG15784 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	17204081	2R_17204081_SNP [dm3] 2R_21316576_SNP [dm6]	G	A	4.683e^-5	0.675	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	5201035	2R_5201035_INS [dm3] 2R_9313530_INS [dm6]	C	CC	4.710e^-5	0.675	UPSTREAM mir-987 INTRON CG13739 & 1 other
3R	14668298	3R_14668298_SNP [dm3] 3R_18842576_SNP [dm6]	T	C	4.726e^-5	0.675	INTRON CG18208
X	3609358	X_3609358_SNP [dm3] X_3715325_SNP [dm6]	C	T	4.752e^-5	0.675	INTRON Rala
2R	9337708	2R_9337708_SNP [dm3] 2R_13450203_SNP [dm6]	T	C	4.905e^-5	0.677	SYNONYMOUS_CODING cnn UPSTREAM cnn & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	7841952	3L_7841952_SNP [dm3] 3L_7848852_SNP [dm6]	A	G	4.954e^-5	0.677	INTRON Pdp1	regulatory region REDfly_CRMs
2L	9280176	2L_9280176_SNP [dm3] 2L_9280176_SNP [dm6]	T	G	4.992e^-5	0.677	INTRON Ggamma30A
3L	701702	3L_701702_SNP [dm3] 3L_701702_SNP [dm6]	G	T	4.997e^-5	0.677	INTERGENIC
X	10401483	X_10401483_SNP [dm3] X_10507450_SNP [dm6]	G	A	5.022e^-5	0.677	INTRON spri
2L	2880246	2L_2880246_SNP [dm3] 2L_2880246_SNP [dm6]	C	T	5.070e^-5	0.677	SYNONYMOUS_CODING betaggt-II DOWNSTREAM NTPase	TF binding site mE1_TFBS_chinmo
3R	13781149	3R_13781149_SNP [dm3] 3R_17955427_SNP [dm6]	A	C	5.106e^-5	0.677	INTRON cpo
3R	14677697	3R_14677697_SNP [dm3] 3R_18851975_SNP [dm6]	T	G	5.115e^-5	0.677	UPSTREAM CR45633 & 1 other INTERGENIC
X	16266038	X_16266038_SNP [dm3] X_16372005_SNP [dm6]	T	A	5.120e^-5	0.677	DOWNSTREAM nonA INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	7841973	3L_7841973_SNP [dm3] 3L_7848873_SNP [dm6]	C	T	5.143e^-5	0.677	INTRON Pdp1	regulatory region REDfly_CRMs
3R	24082952	3R_24082952_SNP [dm3] 3R_28257230_SNP [dm6]	C	A	5.205e^-5	0.677	INTERGENIC
3R	19186532	3R_19186532_SNP [dm3] 3R_23360810_SNP [dm6]	C	A	5.265e^-5	0.677	DOWNSTREAM RpS3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9904178	2L_9904178_SNP [dm3] 2L_9904178_SNP [dm6]	A	C	5.318e^-5	0.677	SYNONYMOUS_CODING CG13124	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5443162	2L_5443162_SNP [dm3] 2L_5443162_SNP [dm6]	G	T	5.344e^-5	0.677	INTERGENIC
3R	2637988	3R_2637988_SNP [dm3] 3R_6812266_SNP [dm6]	C	T	5.427e^-5	0.677	INTRON CR42651	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	9559223	X_9559223_SNP [dm3] X_9665190_SNP [dm6]	A	G	5.437e^-5	0.677	DOWNSTREAM nej INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3615066	X_3615066_SNP [dm3] X_3721033_SNP [dm6]	A	G	5.454e^-5	0.677	INTRON tlk	TF binding site BDTNP1_TFBS_dl
X	3613994	X_3613994_SNP [dm3] X_3719961_SNP [dm6]	T	A	5.501e^-5	0.677	UPSTREAM tlk & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_run
2L	17544944	2L_17544944_SNP [dm3] 2L_17544944_SNP [dm6]	A	T	5.506e^-5	0.677	INTERGENIC
2L	7334907	2L_7334907_DEL [dm3] 2L_7334907_DEL [dm6]	AA	A	5.518e^-5	0.677	UTR_5_PRIME Wnt6
2R	9922168	2R_9922168_SNP [dm3] 2R_14034663_SNP [dm6]	C	T	5.543e^-5	0.677	INTRON mam
2L	7338101	2L_7338101_SNP [dm3] 2L_7338101_SNP [dm6]	T	C	5.579e^-5	0.677	INTRON Wnt6
2R	15597132	2R_15597132_SNP [dm3] 2R_19709627_SNP [dm6]	T	C	5.594e^-5	0.677	INTERGENIC	regulatory region REDfly_CRMs
2L	5443163	2L_5443163_SNP [dm3] 2L_5443163_SNP [dm6]	A	T	5.650e^-5	0.679	INTERGENIC
3L	12306529	3L_12306529_SNP [dm3] 3L_12313429_SNP [dm6]	G	A	5.719e^-5	0.68	INTERGENIC
X	11178183	X_11178183_SNP [dm3] X_11284150_SNP [dm6]	C	A	5.743e^-5	0.68	INTRON CG44422
2L	9279998	2L_9279998_SNP [dm3] 2L_9279998_SNP [dm6]	G	T	5.767e^-5	0.68	INTRON Ggamma30A
X	16266035	X_16266035_SNP [dm3] X_16372002_SNP [dm6]	G	A	5.839e^-5	0.68	DOWNSTREAM nonA INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	19186531	3R_19186531_SNP [dm3] 3R_23360809_SNP [dm6]	A	T	5.873e^-5	0.68	DOWNSTREAM RpS3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12454311	2L_12454311_SNP [dm3] 2L_12454311_SNP [dm6]	T	A	5.997e^-5	0.68	EXON CR17024	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9421660	2L_9421660_SNP [dm3] 2L_9421660_SNP [dm6]	A	G	6.050e^-5	0.68	INTRON Mco1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6605628	3L_6605628_SNP [dm3] 3L_6612528_SNP [dm6]	G	C	6.053e^-5	0.68	INTRON CG8398	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	12362749	3R_12362749_SNP [dm3] 3R_16537027_SNP [dm6]	A	G	6.053e^-5	0.68	INTRON CG42342
2L	11655879	2L_11655879_SNP [dm3] 2L_11655879_SNP [dm6]	T	C	6.080e^-5	0.68	INTERGENIC
2R	9610033	2R_9610033_SNP [dm3] 2R_13722528_SNP [dm6]	A	G	6.091e^-5	0.68	INTRON fas
2L	15351969	2L_15351969_SNP [dm3] 2L_15351969_SNP [dm6]	A	T	6.159e^-5	0.68	INTERGENIC
2L	5443060	2L_5443060_SNP [dm3] 2L_5443060_SNP [dm6]	A	C	6.241e^-5	0.68	INTERGENIC
2R	3339802	2R_3339802_INS [dm3] 2R_7452297_INS [dm6]	T	TTTTT	6.294e^-5	0.68	UPSTREAM fa2h EXON CR45320	TF binding site mE1_TFBS_cad
2L	14177825	2L_14177825_SNP [dm3] 2L_14177825_SNP [dm6]	C	G	6.304e^-5	0.68	INTRON CG43333
2L	4560988	2L_4560988_SNP [dm3] 2L_4560988_SNP [dm6]	G	A	6.415e^-5	0.68	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	128046	2L_128046_SNP [dm3] 2L_128046_SNP [dm6]	G	A	6.538e^-5	0.68	INTRON CG11455 & 1 other	TF binding site mE1_TFBS_Trl
3L	12306515	3L_12306515_SNP [dm3] 3L_12313415_SNP [dm6]	T	G	6.539e^-5	0.68	INTERGENIC
3R	22799279	3R_22799279_SNP [dm3] 3R_26973557_SNP [dm6]	C	T	6.622e^-5	0.68	SYNONYMOUS_CODING CG5521	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	4699281	X_4699281_DEL [dm3] X_4805248_DEL [dm6]	CGTTGAGCA	C	6.650e^-5	0.68	UPSTREAM CG2861 DOWNSTREAM CR45516 INTERGENIC
X	10186005	X_10186005_SNP [dm3] X_10291972_SNP [dm6]	C	G	6.703e^-5	0.68	INTRON alpha-Man-I
X	10185294	X_10185294_SNP [dm3] X_10291261_SNP [dm6]	A	G	6.744e^-5	0.68	INTRON alpha-Man-I
2L	15351926	2L_15351926_SNP [dm3] 2L_15351926_SNP [dm6]	T	A	6.760e^-5	0.68	INTERGENIC
3L	11272410	3L_11272410_SNP [dm3] 3L_11279310_SNP [dm6]	T	C	6.779e^-5	0.68	INTERGENIC
2R	6507091	2R_6507091_SNP [dm3] 2R_10619586_SNP [dm6]	G	T	6.796e^-5	0.68	INTRON CG11883
2R	10021876	2R_10021876_SNP [dm3] 2R_14134371_SNP [dm6]	C	G	6.830e^-5	0.68	INTRON Prosap
2L	18014748	2L_18014748_SNP [dm3] 2L_18014748_SNP [dm6]	A	T	6.899e^-5	0.68	INTRON rdo	regulatory region REDfly_CRMs
2L	5591934	2L_5591934_SNP [dm3] 2L_5591934_SNP [dm6]	G	A	6.900e^-5	0.68	INTERGENIC
3L	8142568	3L_8142568_SNP [dm3] 3L_8149468_SNP [dm6]	T	G	6.949e^-5	0.68	INTRON CG13676
3L	9418820	3L_9418820_SNP [dm3] 3L_9425720_SNP [dm6]	G	C	6.977e^-5	0.68	DOWNSTREAM aay INTRON CG3967	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	11329382	2L_11329382_SNP [dm3] 2L_11329382_SNP [dm6]	G	T	6.986e^-5	0.68	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	3617876	X_3617876_SNP [dm3] X_3723843_SNP [dm6]	C	T	7.174e^-5	0.68	UPSTREAM tlk INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	19097127	2L_19097127_SNP [dm3] 2L_19097127_SNP [dm6]	T	C	7.180e^-5	0.68	INTRON Lim3
2L	18386531	2L_18386531_SNP [dm3] 2L_18386531_SNP [dm6]	G	A	7.219e^-5	0.68	UTR_3_PRIME Fas3 INTRON Fas3
3R	25175439	3R_25175439_SNP [dm3] 3R_29349717_SNP [dm6]	G	A	7.234e^-5	0.68	INTERGENIC
3L	9808729	3L_9808729_SNP [dm3] 3L_9815629_SNP [dm6]	A	G	7.288e^-5	0.68	UPSTREAM CG43897 INTRON CG43897
X	3614191	X_3614191_SNP [dm3] X_3720158_SNP [dm6]	T	C	7.304e^-5	0.68	UTR_5_PRIME tlk UPSTREAM Rala INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_run
3R	24561449	3R_24561449_SNP [dm3] 3R_28735727_SNP [dm6]	A	G	7.324e^-5	0.68	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	19563714	3R_19563714_SNP [dm3] 3R_23737992_SNP [dm6]	C	T	7.340e^-5	0.68	INTRON Hmgcr
3R	23256058	3R_23256058_SNP [dm3] 3R_27430336_SNP [dm6]	G	T	7.364e^-5	0.68	INTRON side
3L	16450014	3L_16450014_SNP [dm3] 3L_16456914_SNP [dm6]	T	G	7.432e^-5	0.68	INTRON CG33158
3L	3367437	3L_3367437_SNP [dm3] 3L_3367437_SNP [dm6]	T	C	7.471e^-5	0.68	INTRON kst
X	3615738	X_3615738_SNP [dm3] X_3721705_SNP [dm6]	A	T	7.503e^-5	0.68	INTRON tlk
3R	16274657	3R_16274657_INS [dm3] 3R_20448935_INS [dm6]	G	GATGTGGG	7.540e^-5	0.68	INTRON Gfrl
X	3546984	X_3546984_INS [dm3] X_3652951_INS [dm6]	T	TC	7.545e^-5	0.68	INTRON AstA-R1
2L	1994847	2L_1994847_SNP [dm3] 2L_1994847_SNP [dm6]	T	A	7.554e^-5	0.68	INTERGENIC
2R	5193297	2R_5193297_SNP [dm3] 2R_9305792_SNP [dm6]	A	C	7.636e^-5	0.68	INTRON Myd88	TF binding site mE1_TFBS_cad
2R	802881	2R_802881_SNP [dm3] 2R_4915376_SNP [dm6]	T	A	7.657e^-5	0.68	INTERGENIC
X	17510358	X_17510358_SNP [dm3] X_17616325_SNP [dm6]	A	G	7.705e^-5	0.68	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14531269	2R_14531269_SNP [dm3] 2R_18643764_SNP [dm6]	T	C	7.781e^-5	0.68	INTRON SP2637
X	3546939	X_3546939_SNP [dm3] X_3652906_SNP [dm6]	C	T	7.800e^-5	0.68	INTRON AstA-R1
3L	6136533	3L_6136533_SNP [dm3] 3L_6143433_SNP [dm6]	T	C	7.817e^-5	0.68	UTR_5_PRIME Lcp65Ad	TF binding site BDTNP1_TFBS_da
3R	16004039	3R_16004039_DEL [dm3] 3R_20178317_DEL [dm6]	CC	C	7.894e^-5	0.68	INTERGENIC
3R	19034804	3R_19034804_SNP [dm3] 3R_23209082_SNP [dm6]	A	C	7.913e^-5	0.68	INTRON cnc
3L	4272801	3L_4272801_SNP [dm3] 3L_4272801_SNP [dm6]	T	G	7.949e^-5	0.68	INTRON CG1273	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	2691554	X_2691554_SNP [dm3] X_2797521_SNP [dm6]	G	T	7.949e^-5	0.68	INTRON kirre
X	10185979	X_10185979_SNP [dm3] X_10291946_SNP [dm6]	T	G	7.981e^-5	0.68	INTRON alpha-Man-I
3L	9344450	3L_9344450_SNP [dm3] 3L_9351350_SNP [dm6]	G	T	8.057e^-5	0.68	UTR_3_PRIME UGP & 1 other DOWNSTREAM UGP
3R	2599816	3R_2599816_SNP [dm3] 3R_6774094_SNP [dm6]	A	G	8.112e^-5	0.68	INTRON CR42721	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	9492206	X_9492206_SNP [dm3] X_9598173_SNP [dm6]	C	A	8.132e^-5	0.68	INTERGENIC
3R	1923723	3R_1923723_INS [dm3] 3R_6098001_INS [dm6]	A	ATCCGTAGTTAGATGCGAAA...	8.156e^-5	0.68	INTRON Gasp
3L	11424852	3L_11424852_SNP [dm3] 3L_11431752_SNP [dm6]	C	T	8.279e^-5	0.68	INTERGENIC
2L	4549707	2L_4549707_DEL [dm3] 2L_4549707_DEL [dm6]	AA	A	8.279e^-5	0.68	INTRON dp
3R	2869383	3R_2869383_SNP [dm3] 3R_7043661_SNP [dm6]	C	T	8.291e^-5	0.68	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5925766	2L_5925766_SNP [dm3] 2L_5925766_SNP [dm6]	A	G	8.410e^-5	0.68	UPSTREAM dsf EXON CR43926	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	13108458	X_13108458_SNP [dm3] X_13214425_SNP [dm6]	A	G	8.414e^-5	0.68	UTR_3_PRIME mew DOWNSTREAM REG & 1 other	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn
X	10185757	X_10185757_SNP [dm3] X_10291724_SNP [dm6]	G	T	8.464e^-5	0.68	INTRON alpha-Man-I
X	2690510	X_2690510_SNP [dm3] X_2796477_SNP [dm6]	A	G	8.477e^-5	0.68	UPSTREAM w INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25825836	3R_25825836_SNP [dm3] 3R_30000114_SNP [dm6]	T	C	8.525e^-5	0.68	SYNONYMOUS_CODING CG34298 UPSTREAM Tace DOWNSTREAM CG11504	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	10185921	X_10185921_SNP [dm3] X_10291888_SNP [dm6]	T	C	8.554e^-5	0.68	INTRON alpha-Man-I
2L	4552366	2L_4552366_SNP [dm3] 2L_4552366_SNP [dm6]	C	T	8.593e^-5	0.68	INTRON dp	TF binding site mE1_TFBS_cad
2L	4552378	2L_4552378_SNP [dm3] 2L_4552378_SNP [dm6]	A	G	8.597e^-5	0.68	INTRON dp	TF binding site mE1_TFBS_cad
2L	15141838	2L_15141838_SNP [dm3] 2L_15141838_SNP [dm6]	G	C	8.625e^-5	0.68	INTERGENIC
2R	9922169	2R_9922169_SNP [dm3] 2R_14034664_SNP [dm6]	T	C	8.661e^-5	0.68	INTRON mam
2R	1215584	2R_1215584_SNP [dm3] 2R_5328079_SNP [dm6]	T	A	8.787e^-5	0.68	INTRON sxc
3L	701734	3L_701734_SNP [dm3] 3L_701734_SNP [dm6]	A	G	8.827e^-5	0.68	INTERGENIC
3L	10741645	3L_10741645_SNP [dm3] 3L_10748545_SNP [dm6]	T	C	8.828e^-5	0.68	INTERGENIC
3L	8068315	3L_8068315_SNP [dm3] 3L_8075215_SNP [dm6]	G	C	8.847e^-5	0.68	INTRON Ect4
X	3611313	X_3611313_SNP [dm3] X_3717280_SNP [dm6]	G	A	8.847e^-5	0.68	INTRON Rala	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14685483	3R_14685483_SNP [dm3] 3R_18859761_SNP [dm6]	C	T	8.974e^-5	0.68	INTERGENIC
3R	2637954	3R_2637954_SNP [dm3] 3R_6812232_SNP [dm6]	A	T	8.990e^-5	0.68	INTRON CR42651	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	15351119	2L_15351119_SNP [dm3] 2L_15351119_SNP [dm6]	T	A	9.011e^-5	0.68	INTERGENIC
2L	4552365	2L_4552365_SNP [dm3] 2L_4552365_SNP [dm6]	T	C	9.095e^-5	0.68	INTRON dp
2R	10021882	2R_10021882_SNP [dm3] 2R_14134377_SNP [dm6]	G	T	9.128e^-5	0.68	INTRON Prosap
X	19575336	X_19575336_INS [dm3] X_19681303_INS [dm6]	G	GACAAACTGAAGTT...	9.158e^-5	0.68	INTRON dome	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
X	10185892	X_10185892_SNP [dm3] X_10291859_SNP [dm6]	C	T	9.188e^-5	0.68	INTRON alpha-Man-I
2L	9515179	2L_9515179_SNP [dm3] 2L_9515179_SNP [dm6]	A	T	9.215e^-5	0.68	INTRON CG33298
3R	13074924	3R_13074924_SNP [dm3] 3R_17249202_SNP [dm6]	C	G	9.269e^-5	0.68	INTRON beat-IIb	regulatory region REDfly_CRMs
3R	12435285	3R_12435285_SNP [dm3] 3R_16609563_SNP [dm6]	A	C	9.317e^-5	0.68	UPSTREAM NPF INTRON NPF
X	3616968	X_3616968_SNP [dm3] X_3722935_SNP [dm6]	A	T	9.402e^-5	0.68	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	3616996	X_3616996_SNP [dm3] X_3722963_SNP [dm6]	C	T	9.407e^-5	0.68	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9803645	2L_9803645_SNP [dm3] 2L_9803645_SNP [dm6]	C	T	9.428e^-5	0.68	INTRON nAChRalpha6
X	3616943	X_3616943_SNP [dm3] X_3722910_SNP [dm6]	C	A	9.517e^-5	0.68	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	6285366	X_6285366_SNP [dm3] X_6391333_SNP [dm6]	G	A	9.525e^-5	0.68	INTERGENIC
3R	21238317	3R_21238317_SNP [dm3] 3R_25412595_SNP [dm6]	A	T	9.578e^-5	0.68	INTRON Fur1
X	19574953	X_19574953_DEL [dm3] X_19680920_DEL [dm6]	CGAATAAA	C	9.693e^-5	0.68	INTRON dome	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3R	16817614	3R_16817614_SNP [dm3] 3R_20991892_SNP [dm6]	T	G	9.704e^-5	0.68	INTRON Calx	TF binding site mE1_TFBS_chinmo
3R	15195912	3R_15195912_SNP [dm3] 3R_19370190_SNP [dm6]	A	G	9.709e^-5	0.68	INTRON Ino80
X	10185929	X_10185929_INS [dm3] X_10291896_INS [dm6]	A	ATTTGGACAATTATTACTTA...	9.734e^-5	0.68	INTRON alpha-Man-I
X	3618438	X_3618438_SNP [dm3] X_3724405_SNP [dm6]	G	T	9.742e^-5	0.68	UPSTREAM tlk INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	25825882	3R_25825882_SNP [dm3] 3R_30000160_SNP [dm6]	T	G	9.744e^-5	0.68	UPSTREAM Tace DOWNSTREAM CG11504 INTRON CG34298	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	12325156	2L_12325156_INS [dm3] 2L_12325156_INS [dm6]	T	TTTATTATATTTTTTTT...	9.765e^-5	0.68	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12325168	2L_12325168_DEL [dm3] 2L_12325168_DEL [dm6]	TA	T	9.765e^-5	0.68	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17203523	2R_17203523_SNP [dm3] 2R_21316018_SNP [dm6]	A	C	9.786e^-5	0.68	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	9956786	3L_9956786_SNP [dm3] 3L_9963686_SNP [dm6]	C	T	9.789e^-5	0.68	INTRON CG34356
2L	13435484	2L_13435484_SNP [dm3] 2L_13435484_SNP [dm6]	G	T	9.809e^-5	0.68	UPSTREAM Tehao INTRON CG42784
2R	10021889	2R_10021889_SNP [dm3] 2R_14134384_SNP [dm6]	A	C	9.850e^-5	0.68	INTRON Prosap
X	5326946	X_5326946_SNP [dm3] X_5432913_SNP [dm6]	A	G	9.884e^-5	0.68	UPSTREAM CR44471 DOWNSTREAM CG15784 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	3591602	3L_3591602_SNP [dm3] 3L_3591602_SNP [dm6]	T	C	9.911e^-5	0.68	INTRON Eip63E
2L	4516241	2L_4516241_SNP [dm3] 2L_4516241_SNP [dm6]	G	C	9.924e^-5	0.68	SYNONYMOUS_CODING dp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2R	17572332	2R_17572332_SNP [dm3] 2R_21684827_SNP [dm6]	G	A	9.983e^-5	0.68	UTR_3_PRIME CG30263 UPSTREAM CG10306	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
3L	3284733	3L_3284733_SNP [dm3] 3L_3284733_SNP [dm6]	T	A	1.000e^-4	0.68	INTRON CG12017
2R	662425	2R_662425_SNP [dm3] 2R_4774920_SNP [dm6]	T	G	1.001e^-4	0.68	INTERGENIC	transposable element FlyBase
3L	6513576	3L_6513576_SNP [dm3] 3L_6520476_SNP [dm6]	C	T	1.008e^-4	0.68	INTRON sfl
2L	4051061	2L_4051061_SNP [dm3] 2L_4051061_SNP [dm6]	A	G	1.018e^-4	0.68	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14677006	3R_14677006_SNP [dm3] 3R_18851284_SNP [dm6]	C	A	1.021e^-4	0.68	UPSTREAM CR45633 DOWNSTREAM CG31226 INTERGENIC
3R	3047699	3R_3047699_SNP [dm3] 3R_7221977_SNP [dm6]	G	C	1.025e^-4	0.68	INTERGENIC
2R	8132421	2R_8132421_DEL [dm3] 2R_12244916_DEL [dm6]	GA	C	1.028e^-4	0.68	UPSTREAM CG43244 INTERGENIC
2L	9803919	2L_9803919_SNP [dm3] 2L_9803919_SNP [dm6]	T	C	1.032e^-4	0.68	INTRON nAChRalpha6
3R	14550388	3R_14550388_SNP [dm3] 3R_18724666_SNP [dm6]	T	A	1.034e^-4	0.68	DOWNSTREAM CG7714 INTRON Cha
2L	18016557	2L_18016557_SNP [dm3] 2L_18016557_SNP [dm6]	G	A	1.044e^-4	0.68	INTRON rdo	TF binding site mE1_TFBS_sbb
2R	9337699	2R_9337699_SNP [dm3] 2R_13450194_SNP [dm6]	T	C	1.051e^-4	0.68	SYNONYMOUS_CODING cnn UPSTREAM cnn & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	3472303	2R_3472303_SNP [dm3] 2R_7584798_SNP [dm6]	G	C	1.056e^-4	0.68	UPSTREAM blow INTRON blow
3L	1031249	3L_1031249_SNP [dm3] 3L_1031249_SNP [dm6]	G	T	1.062e^-4	0.68	INTRON trio	TF binding site mE1_TFBS_sens
3R	22791868	3R_22791868_SNP [dm3] 3R_26966146_SNP [dm6]	G	A	1.069e^-4	0.68	SYNONYMOUS_CODING Gr97a UPSTREAM CG5521	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2L	2880031	2L_2880031_SNP [dm3] 2L_2880031_SNP [dm6]	A	C	1.076e^-4	0.68	DOWNSTREAM NTPase INTRON betaggt-II	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	18032910	3R_18032910_SNP [dm3] 3R_22207188_SNP [dm6]	A	T	1.078e^-4	0.68	INTRON SKIP & 1 other
X	3616998	X_3616998_SNP [dm3] X_3722965_SNP [dm6]	G	T	1.080e^-4	0.68	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	15825145	3L_15825145_SNP [dm3] 3L_15832045_SNP [dm6]	G	A	1.080e^-4	0.68	UPSTREAM CG12713 DOWNSTREAM dbo INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3R	23936871	3R_23936871_SNP [dm3] 3R_28111149_SNP [dm6]	A	G	1.084e^-4	0.68	INTERGENIC
3R	14675777	3R_14675777_SNP [dm3] 3R_18850055_SNP [dm6]	T	A	1.096e^-4	0.68	UPSTREAM CG18208 DOWNSTREAM CR45633 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	3609944	2R_3609944_SNP [dm3] 2R_7722439_SNP [dm6]	C	A	1.101e^-4	0.68	UTR_5_PRIME CG18812 INTRON CG18812	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2439524	3L_2439524_SNP [dm3] 3L_2439524_SNP [dm6]	G	A	1.105e^-4	0.68	NON_SYNONYMOUS_CODING CG45186 UTR_5_PRIME CG45186	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	10185759	X_10185759_SNP [dm3] X_10291726_SNP [dm6]	A	G	1.113e^-4	0.68	INTRON alpha-Man-I
3L	12411201	3L_12411201_SNP [dm3] 3L_12418101_SNP [dm6]	T	C	1.118e^-4	0.68	UPSTREAM ArfGAP1 INTERGENIC	TF binding site mE1_TFBS_cnc
3R	14550325	3R_14550325_SNP [dm3] 3R_18724603_SNP [dm6]	C	T	1.118e^-4	0.68	DOWNSTREAM CG7714 INTRON Cha
2R	9870883	2R_9870883_SNP [dm3] 2R_13983378_SNP [dm6]	C	T	1.136e^-4	0.68	UPSTREAM CG8067 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2L	4134259	2L_4134259_SNP [dm3] 2L_4134259_SNP [dm6]	G	A	1.144e^-4	0.68	INTERGENIC
3L	1424581	3L_1424581_SNP [dm3] 3L_1424581_SNP [dm6]	A	C	1.144e^-4	0.68	INTRON Ptp61F
3R	14677850	3R_14677850_SNP [dm3] 3R_18852128_SNP [dm6]	C	T	1.144e^-4	0.68	UPSTREAM CR45633 & 1 other INTERGENIC
2R	7256283	2R_7256283_SNP [dm3] 2R_11368778_SNP [dm6]	A	C	1.150e^-4	0.68	SYNONYMOUS_CODING CG13204	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9104374	3L_9104374_SNP [dm3] 3L_9111274_SNP [dm6]	A	G	1.152e^-4	0.68	INTRON bol
X	10185901	X_10185901_SNP [dm3] X_10291868_SNP [dm6]	A	T	1.171e^-4	0.68	INTRON alpha-Man-I
2R	10021877	2R_10021877_SNP [dm3] 2R_14134372_SNP [dm6]	T	G	1.171e^-4	0.68	INTRON Prosap
2R	5340714	2R_5340714_SNP [dm3] 2R_9453209_SNP [dm6]	G	C	1.173e^-4	0.68	DOWNSTREAM CG33758 INTRON Camta
2L	4554214	2L_4554214_SNP [dm3] 2L_4554214_SNP [dm6]	G	A	1.181e^-4	0.68	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22791813	3R_22791813_SNP [dm3] 3R_26966091_SNP [dm6]	G	T	1.186e^-4	0.68	SYNONYMOUS_CODING Gr97a UPSTREAM CG5521	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	18648936	3L_18648936_SNP [dm3] 3L_18655836_SNP [dm6]	G	C	1.186e^-4	0.68	INTRON MYPT-75D
3L	15272049	3L_15272049_SNP [dm3] 3L_15278949_SNP [dm6]	A	G	1.187e^-4	0.68	INTERGENIC
3R	18857488	3R_18857488_SNP [dm3] 3R_23031766_SNP [dm6]	C	A	1.191e^-4	0.68	INTERGENIC
2L	9415587	2L_9415587_SNP [dm3] 2L_9415587_SNP [dm6]	T	A	1.193e^-4	0.68	UPSTREAM Shawl INTERGENIC
X	10185762	X_10185762_SNP [dm3] X_10291729_SNP [dm6]	G	C	1.196e^-4	0.68	INTRON alpha-Man-I
3L	9345009	3L_9345009_SNP [dm3] 3L_9351909_SNP [dm6]	C	G	1.196e^-4	0.68	DOWNSTREAM PGRP-LF INTRON UGP
3R	1918566	3R_1918566_SNP [dm3] 3R_6092844_SNP [dm6]	A	C	1.197e^-4	0.68	DOWNSTREAM Gasp INTRON Gasp
2R	14553212	2R_14553212_SNP [dm3] 2R_18665707_SNP [dm6]	C	T	1.204e^-4	0.68	UTR_5_PRIME CG33136	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run
3L	701741	3L_701741_SNP [dm3] 3L_701741_SNP [dm6]	T	C	1.213e^-4	0.68	INTERGENIC
3R	6643225	3R_6643225_SNP [dm3] 3R_10817503_SNP [dm6]	T	A	1.213e^-4	0.68	DOWNSTREAM CG4089 INTERGENIC
3L	16731038	3L_16731038_SNP [dm3] 3L_16737938_SNP [dm6]	T	C	1.220e^-4	0.68	SYNONYMOUS_CODING CG9701	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2260325	3L_2260325_SNP [dm3] 3L_2260325_SNP [dm6]	G	A	1.223e^-4	0.68	SYNONYMOUS_CODING oxt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8937770	2R_8937770_SNP [dm3] 2R_13050265_SNP [dm6]	A	G	1.226e^-4	0.68	UPSTREAM CG13324 INTERGENIC
3L	17476784	3L_17476784_SNP [dm3] 3L_17483684_SNP [dm6]	A	G	1.234e^-4	0.68	INTRON CG6333
2R	10845763	2R_10845763_SNP [dm3] 2R_14958258_SNP [dm6]	C	A	1.236e^-4	0.68	START_GAINED aPKC UTR_5_PRIME aPKC INTRON aPKC	TF binding site BDTNP1_TFBS_dl
3L	5288558	3L_5288558_SNP [dm3] 3L_5295458_SNP [dm6]	G	C	1.238e^-4	0.68	INTERGENIC
X	5327122	X_5327122_SNP [dm3] X_5433089_SNP [dm6]	C	A	1.242e^-4	0.68	UPSTREAM CR44471 DOWNSTREAM CG15784 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	17747741	2R_17747741_SNP [dm3] 2R_21860236_SNP [dm6]	G	T	1.248e^-4	0.68	UPSTREAM CG9294 INTERGENIC
X	14844868	X_14844868_SNP [dm3] X_14950835_SNP [dm6]	T	G	1.256e^-4	0.68	UTR_5_PRIME pdgy UPSTREAM pdgy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	12325158	2L_12325158_SNP [dm3] 2L_12325158_SNP [dm6]	T	G	1.258e^-4	0.68	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19563656	3R_19563656_SNP [dm3] 3R_23737934_SNP [dm6]	A	T	1.261e^-4	0.68	INTRON Hmgcr
3L	700362	3L_700362_SNP [dm3] 3L_700362_SNP [dm6]	A	C	1.266e^-4	0.68	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_kn mE1_TFBS_zfh1
2L	17463295	2L_17463295_SNP [dm3] 2L_17463295_SNP [dm6]	A	G	1.277e^-4	0.68	SYNONYMOUS_CODING BicD	TF binding site mE1_TFBS_HSA
3L	9343825	3L_9343825_SNP [dm3] 3L_9350725_SNP [dm6]	T	C	1.282e^-4	0.68	SYNONYMOUS_CODING PGRP-LF DOWNSTREAM UGP
3R	24150629	3R_24150629_SNP [dm3] 3R_28324907_SNP [dm6]	G	A	1.283e^-4	0.68	INTRON larp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	10283831	3R_10283831_SNP [dm3] 3R_14458109_SNP [dm6]	G	A	1.288e^-4	0.68	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11960573	2R_11960573_SNP [dm3] 2R_16073068_SNP [dm6]	G	C	1.288e^-4	0.68	INTERGENIC
3R	24877894	3R_24877894_SNP [dm3] 3R_29052172_SNP [dm6]	A	T	1.295e^-4	0.68	UTR_3_PRIME CG11841 UPSTREAM CG11842	TF binding site mE1_TFBS_cad
3R	16852276	3R_16852276_SNP [dm3] 3R_21026554_SNP [dm6]	C	T	1.295e^-4	0.68	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14045660	2R_14045660_SNP [dm3] 2R_18158155_SNP [dm6]	T	A	1.300e^-4	0.68	START_GAINED lolal UTR_5_PRIME lolal UPSTREAM CG10914 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3R	24777780	3R_24777780_SNP [dm3] 3R_28952058_SNP [dm6]	C	A	1.301e^-4	0.68	INTRON CG14521
3R	14118741	3R_14118741_SNP [dm3] 3R_18293019_SNP [dm6]	T	G	1.306e^-4	0.68	UPSTREAM l_3_05822 INTRON l_3_05822	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7842484	3L_7842484_SNP [dm3] 3L_7849384_SNP [dm6]	C	T	1.315e^-4	0.68	INTRON Pdp1	regulatory region REDfly_CRMs
2L	3182273	2L_3182273_SNP [dm3] 2L_3182273_SNP [dm6]	A	T	1.320e^-4	0.68	INTRON CG34393
2R	6144841	2R_6144841_SNP [dm3] 2R_10257336_SNP [dm6]	G	T	1.325e^-4	0.68	INTRON CG12911
3L	17617981	3L_17617981_SNP [dm3] 3L_17624881_SNP [dm6]	A	G	1.326e^-4	0.68	INTRON CG7510
X	10185763	X_10185763_SNP [dm3] X_10291730_SNP [dm6]	T	C	1.329e^-4	0.68	INTRON alpha-Man-I
3L	11860001	3L_11860001_SNP [dm3] 3L_11866901_SNP [dm6]	G	A	1.329e^-4	0.68	INTRON CG44837
2R	7088087	2R_7088087_SNP [dm3] 2R_11200582_SNP [dm6]	G	C	1.329e^-4	0.68	INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	13526813	3L_13526813_SNP [dm3] 3L_13533713_SNP [dm6]	A	C	1.330e^-4	0.68	UTR_3_PRIME bru-3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8918549	3L_8918549_SNP [dm3] 3L_8925449_SNP [dm6]	G	A	1.334e^-4	0.68	INTRON Tsp66E	TF binding site BDTNP1_TFBS_twi
3R	15194268	3R_15194268_SNP [dm3] 3R_19368546_SNP [dm6]	A	G	1.336e^-4	0.68	DOWNSTREAM Ino80 INTERGENIC
3L	9065341	3L_9065341_DEL [dm3] 3L_9072241_DEL [dm6]	CC	C	1.338e^-4	0.68	UPSTREAM CG4942 INTRON CG4911	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1440199	2L_1440199_SNP [dm3] 2L_1440199_SNP [dm6]	G	C	1.338e^-4	0.68	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	9280177	2L_9280177_SNP [dm3] 2L_9280177_SNP [dm6]	A	G	1.340e^-4	0.68	INTRON Ggamma30A
X	5326927	X_5326927_SNP [dm3] X_5432894_SNP [dm6]	G	C	1.341e^-4	0.68	UPSTREAM CR44471 DOWNSTREAM CG15784 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	2439566	3L_2439566_SNP [dm3] 3L_2439566_SNP [dm6]	C	G	1.341e^-4	0.68	NON_SYNONYMOUS_CODING CG45186 UTR_5_PRIME CG45186	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8963019	2R_8963019_SNP [dm3] 2R_13075514_SNP [dm6]	C	T	1.350e^-4	0.68	INTRON Drl-2
X	11667828	X_11667828_SNP [dm3] X_11773795_SNP [dm6]	T	A	1.353e^-4	0.68	INTRON dy
3R	19826354	3R_19826354_SNP [dm3] 3R_24000632_SNP [dm6]	A	T	1.355e^-4	0.68	SYNONYMOUS_CODING KrT95D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9921717	2R_9921717_SNP [dm3] 2R_14034212_SNP [dm6]	C	A	1.357e^-4	0.68	INTRON mam
3R	14677672	3R_14677672_SNP [dm3] 3R_18851950_SNP [dm6]	G	A	1.361e^-4	0.68	UPSTREAM CR45633 & 1 other INTERGENIC
3L	15820759	3L_15820759_SNP [dm3] 3L_15827659_SNP [dm6]	G	C	1.362e^-4	0.68	INTRON dbo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	9344453	3L_9344453_SNP [dm3] 3L_9351353_SNP [dm6]	T	C	1.364e^-4	0.68	UTR_3_PRIME UGP & 1 other DOWNSTREAM UGP
X	17510367	X_17510367_SNP [dm3] X_17616334_SNP [dm6]	C	G	1.376e^-4	0.68	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12990356	3L_12990356_SNP [dm3] 3L_12997256_SNP [dm6]	C	G	1.376e^-4	0.68	SYNONYMOUS_CODING CG11262
2R	4857640	2R_4857640_SNP [dm3] 2R_8970135_SNP [dm6]	G	A	1.379e^-4	0.68	SYNONYMOUS_CODING CG8213 UTR_3_PRIME CG8213	TF binding site mE1_TFBS_chinmo
X	16147921	X_16147921_SNP [dm3] X_16253888_SNP [dm6]	A	C	1.386e^-4	0.68	UPSTREAM snRNA:U2:14B DOWNSTREAM snRNA:U5:14B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	9345445	2R_9345445_SNP [dm3] 2R_13457940_SNP [dm6]	G	A	1.389e^-4	0.68	SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8322064	3L_8322064_SNP [dm3] 3L_8328964_SNP [dm6]	A	G	1.390e^-4	0.68	DOWNSTREAM CG34461 INTRON CG34462	TF binding site mE1_TFBS_ttk
3L	3577132	3L_3577132_SNP [dm3] 3L_3577132_SNP [dm6]	A	T	1.399e^-4	0.68	INTRON Eip63E
3L	7873054	3L_7873054_SNP [dm3] 3L_7879954_SNP [dm6]	G	T	1.404e^-4	0.68	INTRON CG32365
3L	8142565	3L_8142565_SNP [dm3] 3L_8149465_SNP [dm6]	T	C	1.412e^-4	0.68	INTRON CG13676
X	13109189	X_13109189_SNP [dm3] X_13215156_SNP [dm6]	A	G	1.414e^-4	0.68	UTR_3_PRIME mew DOWNSTREAM REG
X	13109201	X_13109201_SNP [dm3] X_13215168_SNP [dm6]	G	A	1.414e^-4	0.68	UTR_3_PRIME mew DOWNSTREAM REG
3L	12410841	3L_12410841_DEL [dm3] 3L_12417741_DEL [dm6]	AAATATCTTAAGCAAACAAG...	A	1.424e^-4	0.68	UPSTREAM ArfGAP1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	25825945	3R_25825945_SNP [dm3] 3R_30000223_SNP [dm6]	G	A	1.431e^-4	0.68	SYNONYMOUS_CODING CG34298 UPSTREAM Tace DOWNSTREAM CG11504	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	15823502	3L_15823502_SNP [dm3] 3L_15830402_SNP [dm6]	C	T	1.431e^-4	0.68	SYNONYMOUS_CODING dbo
3L	12306517	3L_12306517_SNP [dm3] 3L_12313417_SNP [dm6]	C	A	1.432e^-4	0.68	INTERGENIC
X	4238779	X_4238779_SNP [dm3] X_4344746_SNP [dm6]	A	C	1.434e^-4	0.68	INTRON norpA
2L	3267495	2L_3267495_SNP [dm3] 2L_3267495_SNP [dm6]	T	A	1.436e^-4	0.68	UPSTREAM CR44484 INTERGENIC
2L	12302495	2L_12302495_SNP [dm3] 2L_12302495_SNP [dm6]	A	G	1.442e^-4	0.68	INTRON aret
3R	24768415	3R_24768415_SNP [dm3] 3R_28942693_SNP [dm6]	C	T	1.443e^-4	0.68	INTRON CG14521	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6513601	3L_6513601_SNP [dm3] 3L_6520501_SNP [dm6]	C	A	1.449e^-4	0.68	INTRON sfl
2R	12047025	2R_12047025_SNP [dm3] 2R_16159520_SNP [dm6]	G	C	1.459e^-4	0.68	UPSTREAM CG10734 INTRON lbk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	12302497	2L_12302497_SNP [dm3] 2L_12302497_SNP [dm6]	T	G	1.461e^-4	0.68	INTRON aret
X	18381071	X_18381071_SNP [dm3] X_18487038_SNP [dm6]	C	T	1.461e^-4	0.68	UPSTREAM psh DOWNSTREAM CG15046 INTERGENIC
3L	3480980	3L_3480980_SNP [dm3] 3L_3480980_SNP [dm6]	C	T	1.474e^-4	0.68	INTRON CG42324
3R	24130294	3R_24130294_SNP [dm3] 3R_28304572_SNP [dm6]	C	T	1.476e^-4	0.68	UTR_5_PRIME CG12516
2R	18708225	2R_18708225_SNP [dm3] 2R_22820720_SNP [dm6]	A	T	1.485e^-4	0.68	NON_SYNONYMOUS_CODING CG30271 UPSTREAM CG42284 INTRON CG30271	TF binding site mE1_TFBS_chinmo
3R	25825531	3R_25825531_INS [dm3] 3R_29999809_INS [dm6]	G	GG	1.489e^-4	0.68	UTR_5_PRIME CG34298 UPSTREAM Tace DOWNSTREAM CG11504	TF binding site mE1_TFBS_cad
3L	477181	3L_477181_SNP [dm3] 3L_477181_SNP [dm6]	T	C	1.495e^-4	0.68	INTRON klar
2L	5592303	2L_5592303_SNP [dm3] 2L_5592303_SNP [dm6]	T	A	1.496e^-4	0.68	INTERGENIC
3L	2167620	3L_2167620_DEL [dm3] 3L_2167620_DEL [dm6]	AT	A	1.498e^-4	0.68	UTR_3_PRIME CG15879
3R	19565280	3R_19565280_SNP [dm3] 3R_23739558_SNP [dm6]	T	C	1.500e^-4	0.68	INTRON Hmgcr
3R	24094892	3R_24094892_SNP [dm3] 3R_28269170_SNP [dm6]	G	A	1.500e^-4	0.68	INTERGENIC
X	17510363	X_17510363_SNP [dm3] X_17616330_SNP [dm6]	C	G	1.503e^-4	0.68	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	485514	2R_485514_SNP [dm3] 2R_4598009_SNP [dm6]	A	C	1.504e^-4	0.68	INTRON p120ctn
2R	16193243	2R_16193243_SNP [dm3] 2R_20305738_SNP [dm6]	C	G	1.504e^-4	0.68	INTRON CG11200
2R	20370835	2R_20370835_SNP [dm3] 2R_24483312_SNP [dm6]	T	C	1.507e^-4	0.68	INTRON CG13579
X	9420890	X_9420890_SNP [dm3] X_9526857_SNP [dm6]	G	C	1.507e^-4	0.68	INTRON CG32700
X	2613155	X_2613155_SNP [dm3] X_2719122_SNP [dm6]	C	A	1.509e^-4	0.68	INTRON CG2701	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8093115	3R_8093115_SNP [dm3] 3R_12267393_SNP [dm6]	T	C	1.510e^-4	0.68	INTRON svp	regulatory region REDfly_CRMs
3R	12911363	3R_12911363_SNP [dm3] 3R_17085641_SNP [dm6]	C	G	1.519e^-4	0.68	START_GAINED GckIII UTR_5_PRIME GckIII DOWNSTREAM kuk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	9344930	3L_9344930_SNP [dm3] 3L_9351830_SNP [dm6]	A	G	1.530e^-4	0.68	SYNONYMOUS_CODING UGP DOWNSTREAM PGRP-LF
X	16046422	X_16046422_SNP [dm3] X_16152389_SNP [dm6]	G	C	1.531e^-4	0.68	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	23936911	3R_23936911_SNP [dm3] 3R_28111189_SNP [dm6]	T	A	1.533e^-4	0.68	INTERGENIC
2R	9922052	2R_9922052_SNP [dm3] 2R_14034547_SNP [dm6]	A	G	1.538e^-4	0.68	INTRON mam
3R	24125599	3R_24125599_SNP [dm3] 3R_28299877_SNP [dm6]	C	A	1.539e^-4	0.68	INTERGENIC
X	3616925	X_3616925_SNP [dm3] X_3722892_SNP [dm6]	A	T	1.543e^-4	0.68	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	2289632	3R_2289632_SNP [dm3] 3R_6463910_SNP [dm6]	C	T	1.544e^-4	0.68	INTERGENIC
3L	17683770	3L_17683770_SNP [dm3] 3L_17690670_SNP [dm6]	A	G	1.544e^-4	0.68	INTRON Ccn
3R	23320073	3R_23320073_SNP [dm3] 3R_27494351_SNP [dm6]	C	T	1.554e^-4	0.68	INTERGENIC
X	9062037	X_9062037_SNP [dm3] X_9168004_SNP [dm6]	G	A	1.560e^-4	0.68	SYNONYMOUS_CODING mei-P26	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26028570	3R_26028570_SNP [dm3] 3R_30202848_SNP [dm6]	G	A	1.564e^-4	0.68	START_GAINED CG9743 UTR_5_PRIME CG9743	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	26028571	3R_26028571_SNP [dm3] 3R_30202849_SNP [dm6]	A	G	1.564e^-4	0.68	UTR_5_PRIME CG9743	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	26028573	3R_26028573_DEL [dm3] 3R_30202851_DEL [dm6]	ATACTTCGGTACTACGGAT...	C	1.564e^-4	0.68	UTR_5_PRIME CG9743	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	26029899	3R_26029899_SNP [dm3] 3R_30204177_SNP [dm6]	C	T	1.564e^-4	0.68	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	6544946	2R_6544946_SNP [dm3] 2R_10657441_SNP [dm6]	A	G	1.564e^-4	0.68	EXON CR44452
2L	7338071	2L_7338071_DEL [dm3] 2L_7338071_DEL [dm6]	CCGTAC	C	1.566e^-4	0.68	INTRON Wnt6
3L	11272320	3L_11272320_SNP [dm3] 3L_11279220_SNP [dm6]	G	A	1.567e^-4	0.68	INTERGENIC
X	5326933	X_5326933_SNP [dm3] X_5432900_SNP [dm6]	T	C	1.571e^-4	0.68	UPSTREAM CR44471 DOWNSTREAM CG15784 INTERGENIC	TF binding site mE1_TFBS_Trl
X	3546855	X_3546855_SNP [dm3] X_3652822_SNP [dm6]	A	G	1.571e^-4	0.68	INTRON AstA-R1
X	12874799	X_12874799_SNP [dm3] X_12980766_SNP [dm6]	G	A	1.575e^-4	0.68	INTERGENIC
X	4685423	X_4685423_SNP [dm3] X_4791390_SNP [dm6]	A	T	1.576e^-4	0.68	INTERGENIC
3R	1923166	3R_1923166_DEL [dm3] 3R_6097444_DEL [dm6]	ACATACGTA	A	1.577e^-4	0.68	INTRON Gasp
2R	10843181	2R_10843181_SNP [dm3] 2R_14955676_SNP [dm6]	C	T	1.580e^-4	0.68	INTRON aPKC	TF binding site mE1_TFBS_HSA
3L	3480997	3L_3480997_SNP [dm3] 3L_3480997_SNP [dm6]	T	G	1.580e^-4	0.68	INTRON CG42324
2L	4546245	2L_4546245_SNP [dm3] 2L_4546245_SNP [dm6]	T	A	1.582e^-4	0.68	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8649611	2L_8649611_INS [dm3] 2L_8649611_INS [dm6]	C	CGC	1.583e^-4	0.68	INTRON Sema-1a
3R	26074243	3R_26074243_SNP [dm3] 3R_30248521_SNP [dm6]	T	G	1.583e^-4	0.68	UPSTREAM tRNA:CR31383 DOWNSTREAM tRNA:CR31023 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	3287749	2R_3287749_SNP [dm3] 2R_7400244_SNP [dm6]	G	A	1.588e^-4	0.68	UPSTREAM CG11112 INTRON Eaf
2L	12325115	2L_12325115_SNP [dm3] 2L_12325115_SNP [dm6]	T	C	1.603e^-4	0.68	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4005046	X_4005046_SNP [dm3] X_4111013_SNP [dm6]	G	A	1.614e^-4	0.68	DOWNSTREAM Nsun2 & 1 other INTERGENIC
3L	6433892	3L_6433892_SNP [dm3] 3L_6440792_SNP [dm6]	T	A	1.620e^-4	0.68	INTRON CG42747
X	8271967	X_8271967_SNP [dm3] X_8377934_SNP [dm6]	C	T	1.621e^-4	0.68	INTERGENIC
3R	26680163	3R_26680163_SNP [dm3] 3R_30854441_SNP [dm6]	A	T	1.621e^-4	0.68	DOWNSTREAM tll INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17059114	2R_17059114_SNP [dm3] 2R_21171609_SNP [dm6]	T	C	1.624e^-4	0.68	UPSTREAM LSm1 INTRON Xpd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	20857352	2L_20857352_SNP [dm3] 2L_20857352_SNP [dm6]	T	C	1.627e^-4	0.68	SYNONYMOUS_CODING CG14400 DOWNSTREAM twit	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7841736	3L_7841736_SNP [dm3] 3L_7848636_SNP [dm6]	G	T	1.630e^-4	0.68	INTRON Pdp1	regulatory region REDfly_CRMs
3L	7841737	3L_7841737_SNP [dm3] 3L_7848637_SNP [dm6]	G	T	1.630e^-4	0.68	INTRON Pdp1	regulatory region REDfly_CRMs
X	21136539	X_21136539_SNP [dm3] X_21265512_SNP [dm6]	C	T	1.630e^-4	0.68	INTRON CG32521
3L	15271425	3L_15271425_SNP [dm3] 3L_15278325_SNP [dm6]	T	A	1.631e^-4	0.68	INTERGENIC
X	19575057	X_19575057_SNP [dm3] X_19681024_SNP [dm6]	G	A	1.632e^-4	0.68	INTRON dome	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	18337341	3R_18337341_SNP [dm3] 3R_22511619_SNP [dm6]	C	A	1.633e^-4	0.68	INTRON Octbeta1R	regulatory region REDfly_CRMs
3R	1865982	3R_1865982_SNP [dm3] 3R_6040260_SNP [dm6]	A	C	1.635e^-4	0.68	INTERGENIC
2L	4011706	2L_4011706_DEL [dm3] 2L_4011706_DEL [dm6]	TGTAAATATGT...	T	1.637e^-4	0.68	INTERGENIC
3L	701794	3L_701794_SNP [dm3] 3L_701794_SNP [dm6]	C	T	1.638e^-4	0.68	INTERGENIC
3L	3289480	3L_3289480_SNP [dm3] 3L_3289480_SNP [dm6]	G	A	1.640e^-4	0.68	INTRON CG12017
3R	20919891	3R_20919891_SNP [dm3] 3R_25094169_SNP [dm6]	C	A	1.642e^-4	0.68	UPSTREAM fd96Cb INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	17574144	3L_17574144_SNP [dm3] 3L_17581044_SNP [dm6]	A	T	1.652e^-4	0.68	INTRON Eip74EF
3L	2423228	3L_2423228_SNP [dm3] 3L_2423228_SNP [dm6]	C	T	1.655e^-4	0.68	INTRON CG45186
3R	17655522	3R_17655522_SNP [dm3] 3R_21829800_SNP [dm6]	A	C	1.658e^-4	0.68	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	1911782	3L_1911782_SNP [dm3] 3L_1911782_SNP [dm6]	G	A	1.659e^-4	0.68	INTERGENIC
3L	13839796	3L_13839796_SNP [dm3] 3L_13846696_SNP [dm6]	T	G	1.662e^-4	0.68	INTRON Hml
2L	12302537	2L_12302537_SNP [dm3] 2L_12302537_SNP [dm6]	G	C	1.666e^-4	0.68	INTRON aret
2R	13704885	2R_13704885_SNP [dm3] 2R_17817380_SNP [dm6]	A	C	1.669e^-4	0.68	SPLICE_SITE_REGION grh SYNONYMOUS_CODING grh INTRON grh	regulatory region REDfly_CRMs
X	16046425	X_16046425_SNP [dm3] X_16152392_SNP [dm6]	T	A	1.669e^-4	0.68	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	7773891	2L_7773891_SNP [dm3] 2L_7773891_SNP [dm6]	A	G	1.672e^-4	0.68	INTRON CG7191
3R	15748318	3R_15748318_SNP [dm3] 3R_19922596_SNP [dm6]	G	T	1.673e^-4	0.68	UPSTREAM CR43282 INTRON CG4462	TF binding site mE1_TFBS_cad
3R	15748325	3R_15748325_SNP [dm3] 3R_19922603_SNP [dm6]	G	C	1.673e^-4	0.68	UPSTREAM CR43282 INTRON CG4462	TF binding site mE1_TFBS_cad
2L	9809516	2L_9809516_SNP [dm3] 2L_9809516_SNP [dm6]	T	A	1.674e^-4	0.68	INTRON nAChRalpha6
X	15666533	X_15666533_SNP [dm3] X_15772500_SNP [dm6]	G	A	1.677e^-4	0.68	SYNONYMOUS_CODING CG33172 UPSTREAM CG43672
X	3613529	X_3613529_SNP [dm3] X_3719496_SNP [dm6]	G	A	1.679e^-4	0.68	UTR_5_PRIME Rala UPSTREAM tlk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
X	10185951	X_10185951_SNP [dm3] X_10291918_SNP [dm6]	T	C	1.681e^-4	0.68	INTRON alpha-Man-I
2L	4546687	2L_4546687_SNP [dm3] 2L_4546687_SNP [dm6]	A	G	1.689e^-4	0.68	NON_SYNONYMOUS_CODING dp INTRON dp
X	13838021	X_13838021_SNP [dm3] X_13943988_SNP [dm6]	G	A	1.689e^-4	0.68	INTRON mamo
3R	10283754	3R_10283754_SNP [dm3] 3R_14458032_SNP [dm6]	A	C	1.691e^-4	0.68	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4336531	2L_4336531_SNP [dm3] 2L_4336531_SNP [dm6]	A	G	1.695e^-4	0.68	UTR_5_PRIME Atet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	10488744	X_10488744_SNP [dm3] X_10594711_SNP [dm6]	G	A	1.696e^-4	0.68	SYNONYMOUS_CODING Hmr	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4045930	3L_4045930_SNP [dm3] 3L_4045930_SNP [dm6]	G	A	1.698e^-4	0.68	UPSTREAM CG1136 INTERGENIC
3R	11968879	3R_11968879_DEL [dm3] 3R_16143157_DEL [dm6]	ACC	G	1.709e^-4	0.68	INTRON Sb
3L	5169804	3L_5169804_SNP [dm3] 3L_5176704_SNP [dm6]	C	T	1.713e^-4	0.68	INTRON shep
2L	12302481	2L_12302481_DEL [dm3] 2L_12302481_DEL [dm6]	GG	G	1.717e^-4	0.68	INTRON aret
2L	12302494	2L_12302494_SNP [dm3] 2L_12302494_SNP [dm6]	A	G	1.717e^-4	0.68	INTRON aret
3R	13923616	3R_13923616_SNP [dm3] 3R_18097894_SNP [dm6]	G	A	1.721e^-4	0.68	INTRON sr
3L	7841988	3L_7841988_SNP [dm3] 3L_7848888_SNP [dm6]	A	C	1.722e^-4	0.68	INTRON Pdp1	regulatory region REDfly_CRMs
2L	9803634	2L_9803634_SNP [dm3] 2L_9803634_SNP [dm6]	C	T	1.730e^-4	0.68	INTRON nAChRalpha6
3R	23936578	3R_23936578_SNP [dm3] 3R_28110856_SNP [dm6]	C	A	1.730e^-4	0.68	INTERGENIC
2L	15351096	2L_15351096_SNP [dm3] 2L_15351096_SNP [dm6]	T	C	1.734e^-4	0.68	INTERGENIC
3R	2493139	3R_2493139_SNP [dm3] 3R_6667417_SNP [dm6]	C	G	1.735e^-4	0.68	INTRON lab	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	10307279	3L_10307279_DEL [dm3] 3L_10314179_DEL [dm6]	ATTCCAAAAAGTAACTTAAT...	A	1.735e^-4	0.68	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7795233	3L_7795233_SNP [dm3] 3L_7802133_SNP [dm6]	T	C	1.736e^-4	0.68	INTRON CG32369
3L	16737255	3L_16737255_SNP [dm3] 3L_16744155_SNP [dm6]	C	T	1.737e^-4	0.68	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	24131614	3R_24131614_SNP [dm3] 3R_28305892_SNP [dm6]	A	G	1.742e^-4	0.68	INTERGENIC
2R	8488811	2R_8488811_SNP [dm3] 2R_12601306_SNP [dm6]	G	A	1.755e^-4	0.68	INTRON Amph
3L	12304601	3L_12304601_SNP [dm3] 3L_12311501_SNP [dm6]	G	A	1.755e^-4	0.68	UTR_3_PRIME CG44355
2L	7336836	2L_7336836_SNP [dm3] 2L_7336836_SNP [dm6]	G	C	1.759e^-4	0.68	INTRON Wnt6
X	10886258	X_10886258_SNP [dm3] X_10992225_SNP [dm6]	C	G	1.761e^-4	0.68	INTRON CG42339
3R	23332647	3R_23332647_SNP [dm3] 3R_27506925_SNP [dm6]	G	A	1.764e^-4	0.68	INTERGENIC
2L	334299	2L_334299_DEL [dm3] 2L_334299_DEL [dm6]	CT	C	1.768e^-4	0.68	INTRON Plc21C	TF binding site mE1_TFBS_inv
X	17692166	X_17692166_SNP [dm3] X_17798133_SNP [dm6]	G	A	1.775e^-4	0.68	INTRON OdsH
3L	12299209	3L_12299209_SNP [dm3] 3L_12306109_SNP [dm6]	A	G	1.779e^-4	0.68	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	9290459	2R_9290459_SNP [dm3] 2R_13402954_SNP [dm6]	T	C	1.779e^-4	0.68	INTERGENIC
2L	9811408	2L_9811408_SNP [dm3] 2L_9811408_SNP [dm6]	G	T	1.785e^-4	0.68	INTRON nAChRalpha6
2L	8588302	2L_8588302_SNP [dm3] 2L_8588302_SNP [dm6]	G	A	1.789e^-4	0.68	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	11173071	2L_11173071_SNP [dm3] 2L_11173071_SNP [dm6]	T	A	1.791e^-4	0.68	INTRON Ca-beta
2R	16564119	2R_16564119_INS [dm3] 2R_20676614_INS [dm6]	A	AA	1.791e^-4	0.68	INTERGENIC
2R	10021890	2R_10021890_SNP [dm3] 2R_14134385_SNP [dm6]	A	C	1.796e^-4	0.68	INTRON Prosap
2L	9389029	2L_9389029_SNP [dm3] 2L_9389029_SNP [dm6]	T	G	1.796e^-4	0.68	INTRON Shawl & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16210930	2L_16210930_INS [dm3] 2L_16210930_INS [dm6]	C	CTTGGATGAGACTGGC...	1.805e^-4	0.68	UPSTREAM CG31819 INTERGENIC
3L	483650	3L_483650_SNP [dm3] 3L_483650_SNP [dm6]	G	T	1.806e^-4	0.68	INTRON klar
3L	3486344	3L_3486344_SNP [dm3] 3L_3486344_SNP [dm6]	T	C	1.807e^-4	0.68	INTRON CG42324
2L	5098135	2L_5098135_SNP [dm3] 2L_5098135_SNP [dm6]	T	G	1.810e^-4	0.68	SYNONYMOUS_CODING CG4230	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6144989	2R_6144989_SNP [dm3] 2R_10257484_SNP [dm6]	T	C	1.817e^-4	0.68	INTRON CG12911
2L	15734557	2L_15734557_SNP [dm3] 2L_15734557_SNP [dm6]	C	G	1.818e^-4	0.68	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	17376300	2R_17376300_SNP [dm3] 2R_21488795_SNP [dm6]	C	T	1.819e^-4	0.68	INTRON Fkbp14
2R	10836955	2R_10836955_SNP [dm3] 2R_14949450_SNP [dm6]	A	G	1.819e^-4	0.68	INTRON aPKC
3R	1931657	3R_1931657_SNP [dm3] 3R_6105935_SNP [dm6]	C	T	1.825e^-4	0.68	INTERGENIC	regulatory region REDfly_CRMs
X	10185817	X_10185817_INS [dm3] X_10291784_INS [dm6]	C	TAGATTCGTTGAA...	1.826e^-4	0.68	INTRON alpha-Man-I
3L	7275522	3L_7275522_SNP [dm3] 3L_7282422_SNP [dm6]	G	A	1.828e^-4	0.68	INTRON unc-13-4A
3L	12308561	3L_12308561_SNP [dm3] 3L_12315461_SNP [dm6]	A	C	1.830e^-4	0.68	INTERGENIC
2L	3419788	2L_3419788_SNP [dm3] 2L_3419788_SNP [dm6]	T	G	1.837e^-4	0.68	INTRON pgant2
3R	2219919	3R_2219919_SNP [dm3] 3R_6394197_SNP [dm6]	T	C	1.842e^-4	0.68	INTRON Dmtn
3R	25796653	3R_25796653_SNP [dm3] 3R_29970931_SNP [dm6]	G	T	1.847e^-4	0.68	INTERGENIC
3L	4784690	3L_4784690_SNP [dm3] 3L_4784690_SNP [dm6]	G	A	1.853e^-4	0.68	INTRON RhoGEF64C
3R	19186515	3R_19186515_SNP [dm3] 3R_23360793_SNP [dm6]	C	T	1.857e^-4	0.68	DOWNSTREAM RpS3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3267302	2L_3267302_SNP [dm3] 2L_3267302_SNP [dm6]	C	A	1.863e^-4	0.68	UPSTREAM CR44484 INTERGENIC
3R	15194652	3R_15194652_INS [dm3] 3R_19368930_INS [dm6]	A	AC	1.863e^-4	0.68	DOWNSTREAM Ino80 INTERGENIC
3L	702862	3L_702862_SNP [dm3] 3L_702862_SNP [dm6]	C	T	1.866e^-4	0.68	INTERGENIC
2R	9137072	2R_9137072_SNP [dm3] 2R_13249567_SNP [dm6]	A	T	1.867e^-4	0.68	DOWNSTREAM Mp20 INTRON CG4712
2R	14552867	2R_14552867_SNP [dm3] 2R_18665362_SNP [dm6]	G	A	1.868e^-4	0.68	NON_SYNONYMOUS_CODING CG33136	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26074175	3R_26074175_SNP [dm3] 3R_30248453_SNP [dm6]	G	A	1.874e^-4	0.681	UPSTREAM tRNA:CR31383 DOWNSTREAM tRNA:CR31023 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8624370	2L_8624370_SNP [dm3] 2L_8624370_SNP [dm6]	C	A	1.881e^-4	0.681	INTRON Sema-1a	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3R	15463344	3R_15463344_SNP [dm3] 3R_19637622_SNP [dm6]	G	T	1.886e^-4	0.681	SPLICE_SITE_REGION subdued INTRON subdued
2R	7286655	2R_7286655_SNP [dm3] 2R_11399150_SNP [dm6]	T	C	1.895e^-4	0.681	DOWNSTREAM tRNA:CR30506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10944390	2L_10944390_SNP [dm3] 2L_10944390_SNP [dm6]	G	C	1.897e^-4	0.681	UPSTREAM CR44493 INTRON dpr2
2R	9137125	2R_9137125_SNP [dm3] 2R_13249620_SNP [dm6]	T	C	1.903e^-4	0.681	DOWNSTREAM Mp20 INTRON CG4712
3L	7562327	3L_7562327_SNP [dm3] 3L_7569227_SNP [dm6]	A	T	1.909e^-4	0.681	INTRON frac
3L	7562328	3L_7562328_SNP [dm3] 3L_7569228_SNP [dm6]	T	A	1.909e^-4	0.681	INTRON frac
3R	24128853	3R_24128853_INS [dm3] 3R_28303131_INS [dm6]	C	CC	1.910e^-4	0.681	DOWNSTREAM CG12516 INTERGENIC
X	2019428	X_2019428_DEL [dm3] X_2125395_DEL [dm6]	CGTAACTCT	C	1.913e^-4	0.681	DOWNSTREAM ph-p INTERGENIC	enhancer mE1_CBP_Enhancers silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	14677663	3R_14677663_SNP [dm3] 3R_18851941_SNP [dm6]	T	A	1.913e^-4	0.681	UPSTREAM CR45633 & 1 other INTERGENIC
2L	6342365	2L_6342365_SNP [dm3] 2L_6342365_SNP [dm6]	T	G	1.914e^-4	0.681	INTRON Cpr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17151781	3L_17151781_SNP [dm3] 3L_17158681_SNP [dm6]	A	G	1.923e^-4	0.681	INTRON Rbp6	TF binding site BDTNP1_TFBS_twi
2L	7357517	2L_7357517_SNP [dm3] 2L_7357517_SNP [dm6]	T	C	1.924e^-4	0.681	INTERGENIC
3R	10283763	3R_10283763_SNP [dm3] 3R_14458041_SNP [dm6]	T	C	1.924e^-4	0.681	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3645440	2R_3645440_SNP [dm3] 2R_7757935_SNP [dm6]	G	A	1.928e^-4	0.681	INTRON CG30497 & 1 other	TF binding site BDTNP1_TFBS_twi
3L	12411561	3L_12411561_SNP [dm3] 3L_12418461_SNP [dm6]	C	T	1.940e^-4	0.681	UPSTREAM ArfGAP1 INTERGENIC	TF binding site mE1_TFBS_cnc
3R	14738914	3R_14738914_SNP [dm3] 3R_18913192_SNP [dm6]	G	T	1.948e^-4	0.681	UPSTREAM CG14291 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	4657401	2L_4657401_SNP [dm3] 2L_4657401_SNP [dm6]	A	G	1.953e^-4	0.681	INTERGENIC
3L	702855	3L_702855_SNP [dm3] 3L_702855_SNP [dm6]	G	T	1.954e^-4	0.681	INTERGENIC
2R	5193086	2R_5193086_SNP [dm3] 2R_9305581_SNP [dm6]	T	C	1.956e^-4	0.681	SYNONYMOUS_CODING Myd88	TF binding site mE1_TFBS_cad
3L	5528279	3L_5528279_SNP [dm3] 3L_5535179_SNP [dm6]	C	T	1.959e^-4	0.681	SYNONYMOUS_CODING CG13285
3L	2153455	3L_2153455_SNP [dm3] 3L_2153455_SNP [dm6]	T	C	1.962e^-4	0.681	UTR_3_PRIME CG15822
3L	16881535	3L_16881535_INS [dm3] 3L_16888435_INS [dm6]	A	AA	1.964e^-4	0.681	INTRON Lmpt
3R	19563662	3R_19563662_SNP [dm3] 3R_23737940_SNP [dm6]	C	T	1.964e^-4	0.681	INTRON Hmgcr
2R	11825409	2R_11825409_INS [dm3] 2R_15937904_INS [dm6]	T	TTGT	1.968e^-4	0.681	INTRON Mlf	TF binding site mE1_TFBS_HSA
3R	14088649	3R_14088649_SNP [dm3] 3R_18262927_SNP [dm6]	T	G	1.971e^-4	0.681	INTERGENIC
X	2691546	X_2691546_SNP [dm3] X_2797513_SNP [dm6]	C	T	1.978e^-4	0.681	INTRON kirre
X	10893173	X_10893173_SNP [dm3] X_10999140_SNP [dm6]	T	C	1.979e^-4	0.681	INTRON CG42339
3R	14088651	3R_14088651_SNP [dm3] 3R_18262929_SNP [dm6]	A	T	1.979e^-4	0.681	INTERGENIC
3R	19186507	3R_19186507_SNP [dm3] 3R_23360785_SNP [dm6]	G	T	1.988e^-4	0.683	DOWNSTREAM RpS3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	701726	3L_701726_SNP [dm3] 3L_701726_SNP [dm6]	G	C	1.992e^-4	0.683	INTERGENIC
3L	3526512	3L_3526512_SNP [dm3] 3L_3526512_SNP [dm6]	A	G	2.003e^-4	0.685	INTRON Eip63E
3L	10741748	3L_10741748_SNP [dm3] 3L_10748648_SNP [dm6]	G	A	2.009e^-4	0.686	INTERGENIC
3L	11110387	3L_11110387_SNP [dm3] 3L_11117287_SNP [dm6]	C	A	2.016e^-4	0.686	INTRON fd68A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	19627264	3R_19627264_SNP [dm3] 3R_23801542_SNP [dm6]	T	C	2.016e^-4	0.686	UTR_3_PRIME mbc DOWNSTREAM CG33111
3L	16075402	3L_16075402_SNP [dm3] 3L_16082302_SNP [dm6]	A	C	2.020e^-4	0.686	UPSTREAM CG33258 DOWNSTREAM Mbs INTERGENIC
2L	13557270	2L_13557270_SNP [dm3] 2L_13557270_SNP [dm6]	C	G	2.027e^-4	0.686	INTRON kuz
3L	1320893	3L_1320893_DEL [dm3] 3L_1320893_DEL [dm6]	AA	A	2.027e^-4	0.686	UPSTREAM Myo61F DOWNSTREAM CG9184 INTRON Myo61F
3R	15748282	3R_15748282_SNP [dm3] 3R_19922560_SNP [dm6]	T	C	2.039e^-4	0.687	UPSTREAM CR43282 INTRON CG4462
3R	11283512	3R_11283512_SNP [dm3] 3R_15457790_SNP [dm6]	G	A	2.040e^-4	0.687	INTRON AdamTS-A
2R	17747754	2R_17747754_SNP [dm3] 2R_21860249_SNP [dm6]	T	A	2.049e^-4	0.687	UPSTREAM CG9294 INTERGENIC
3R	14677017	3R_14677017_SNP [dm3] 3R_18851295_SNP [dm6]	T	A	2.051e^-4	0.687	UPSTREAM CR45633 DOWNSTREAM CG31226 INTERGENIC
2R	17376340	2R_17376340_SNP [dm3] 2R_21488835_SNP [dm6]	G	A	2.052e^-4	0.687	INTRON Fkbp14
3R	14677785	3R_14677785_SNP [dm3] 3R_18852063_SNP [dm6]	T	C	2.055e^-4	0.687	UPSTREAM CR45633 & 1 other INTERGENIC
2L	9107807	2L_9107807_SNP [dm3] 2L_9107807_SNP [dm6]	A	T	2.056e^-4	0.687	INTERGENIC
3L	10642240	3L_10642240_SNP [dm3] 3L_10649140_SNP [dm6]	T	C	2.062e^-4	0.688	INTRON CG32066
3L	18598256	3L_18598256_SNP [dm3] 3L_18605156_SNP [dm6]	C	T	2.077e^-4	0.689	SYNONYMOUS_CODING CG18234 UPSTREAM CG18233 INTRON CG4174 & 1 other
X	9420887	X_9420887_SNP [dm3] X_9526854_SNP [dm6]	A	G	2.082e^-4	0.689	INTRON CG32700
X	8555143	X_8555143_SNP [dm3] X_8661110_SNP [dm6]	T	C	2.085e^-4	0.689	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10944453	2L_10944453_INS [dm3] 2L_10944453_INS [dm6]	A	ATGTT	2.086e^-4	0.689	UPSTREAM CR44493 INTRON dpr2
2L	10182808	2L_10182808_SNP [dm3] 2L_10182808_SNP [dm6]	A	C	2.093e^-4	0.689	SYNONYMOUS_CODING Sur
2L	16861450	2L_16861450_SNP [dm3] 2L_16861450_SNP [dm6]	C	A	2.098e^-4	0.689	UTR_5_PRIME CG6012 UPSTREAM CR43858	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7428971	3L_7428971_INS [dm3] 3L_7435871_INS [dm6]	T	TCAAT	2.099e^-4	0.689	UPSTREAM Rac2 DOWNSTREAM CG14835 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
3L	1430276	3L_1430276_SNP [dm3] 3L_1430276_SNP [dm6]	A	C	2.100e^-4	0.689	INTRON Ptp61F
3R	1928973	3R_1928973_SNP [dm3] 3R_6103251_SNP [dm6]	C	A	2.103e^-4	0.689	DOWNSTREAM CR44929 INTRON CR44929	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi
2L	4503437	2L_4503437_SNP [dm3] 2L_4503437_SNP [dm6]	G	A	2.105e^-4	0.689	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	19786703	X_19786703_SNP [dm3] X_19892670_SNP [dm6]	T	A	2.117e^-4	0.689	INTRON Hers
3R	19186542	3R_19186542_SNP [dm3] 3R_23360820_SNP [dm6]	G	C	2.122e^-4	0.689	DOWNSTREAM RpS3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2835209	3L_2835209_SNP [dm3] 3L_2835209_SNP [dm6]	C	T	2.124e^-4	0.689	INTRON CG43444
3L	708105	3L_708105_SNP [dm3] 3L_708105_SNP [dm6]	T	C	2.144e^-4	0.689	UTR_5_PRIME CG13895 DOWNSTREAM CkIIalpha-i3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2L	7336772	2L_7336772_SNP [dm3] 2L_7336772_SNP [dm6]	A	G	2.145e^-4	0.689	INTRON Wnt6
3R	21648504	3R_21648504_SNP [dm3] 3R_25822782_SNP [dm6]	C	T	2.157e^-4	0.689	DOWNSTREAM CR44949 INTERGENIC
3R	24129696	3R_24129696_SNP [dm3] 3R_28303974_SNP [dm6]	T	A	2.158e^-4	0.689	SYNONYMOUS_CODING CG12516
2L	9414222	2L_9414222_SNP [dm3] 2L_9414222_SNP [dm6]	C	A	2.166e^-4	0.689	INTRON Shawl
2L	16021618	2L_16021618_SNP [dm3] 2L_16021618_SNP [dm6]	G	A	2.177e^-4	0.689	INTRON beat-Ic
3R	2285802	3R_2285802_SNP [dm3] 3R_6460080_SNP [dm6]	C	G	2.177e^-4	0.689	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	26331873	3R_26331873_SNP [dm3] 3R_30506151_SNP [dm6]	G	A	2.178e^-4	0.689	NON_SYNONYMOUS_CODING CG15539 UTR_5_PRIME CG15539 UPSTREAM PH4alphaSG1 & 1 other
X	3614219	X_3614219_SNP [dm3] X_3720186_SNP [dm6]	C	A	2.182e^-4	0.689	UTR_5_PRIME tlk UPSTREAM Rala INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_run
3L	8448257	3L_8448257_SNP [dm3] 3L_8455157_SNP [dm6]	A	G	2.185e^-4	0.689	INTRON Gug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	4534022	2L_4534022_SNP [dm3] 2L_4534022_SNP [dm6]	C	A	2.186e^-4	0.689	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_sens
3R	8111307	3R_8111307_SNP [dm3] 3R_12285585_SNP [dm6]	T	A	2.186e^-4	0.689	INTRON svp
2L	4325329	2L_4325329_SNP [dm3] 2L_4325329_SNP [dm6]	T	C	2.187e^-4	0.689	INTRON CG16857
3R	10283769	3R_10283769_SNP [dm3] 3R_14458047_SNP [dm6]	G	A	2.188e^-4	0.689	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5443159	2L_5443159_SNP [dm3] 2L_5443159_SNP [dm6]	A	T	2.192e^-4	0.689	INTERGENIC
2R	8133105	2R_8133105_SNP [dm3] 2R_12245600_SNP [dm6]	A	C	2.195e^-4	0.689	UPSTREAM CG43244 INTERGENIC
3L	17747125	3L_17747125_SNP [dm3] 3L_17754025_SNP [dm6]	G	T	2.196e^-4	0.689	SYNONYMOUS_CODING Adgf-A DOWNSTREAM Msi
3L	11110060	3L_11110060_SNP [dm3] 3L_11116960_SNP [dm6]	G	T	2.198e^-4	0.689	NON_SYNONYMOUS_CODING fd68A	TF binding site BDTNP1_TFBS_dl
3L	1997819	3L_1997819_SNP [dm3] 3L_1997819_SNP [dm6]	A	G	2.198e^-4	0.689	INTERGENIC
X	8473783	X_8473783_SNP [dm3] X_8579750_SNP [dm6]	A	T	2.204e^-4	0.689	INTRON CG12065
2L	4011701	2L_4011701_SNP [dm3] 2L_4011701_SNP [dm6]	A	T	2.207e^-4	0.689	INTERGENIC
X	10296719	X_10296719_SNP [dm3] X_10402686_SNP [dm6]	A	G	2.209e^-4	0.689	INTRON flw
X	13878129	X_13878129_SNP [dm3] X_13984096_SNP [dm6]	A	C	2.210e^-4	0.689	INTRON mamo
2R	9137091	2R_9137091_SNP [dm3] 2R_13249586_SNP [dm6]	G	C	2.214e^-4	0.689	DOWNSTREAM Mp20 INTRON CG4712
2L	14241348	2L_14241348_SNP [dm3] 2L_14241348_SNP [dm6]	T	G	2.216e^-4	0.689	INTRON CR44216
X	6298910	X_6298910_SNP [dm3] X_6404877_SNP [dm6]	G	A	2.222e^-4	0.689	INTERGENIC
2L	21057413	2L_21057413_SNP [dm3] 2L_21057413_SNP [dm6]	C	A	2.222e^-4	0.689	UTR_3_PRIME Itgbetanu DOWNSTREAM CG9265	transposable element FlyBase
X	9880875	X_9880875_SNP [dm3] X_9986842_SNP [dm6]	A	T	2.225e^-4	0.689	INTERGENIC
3R	14687801	3R_14687801_SNP [dm3] 3R_18862079_SNP [dm6]	G	A	2.232e^-4	0.689	INTERGENIC
3R	10554173	3R_10554173_INS [dm3] 3R_14728451_INS [dm6]	A	AGTGC	2.238e^-4	0.689	INTRON CG7530
2L	8587679	2L_8587679_SNP [dm3] 2L_8587679_SNP [dm6]	A	G	2.243e^-4	0.689	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	7842166	3L_7842166_SNP [dm3] 3L_7849066_SNP [dm6]	A	C	2.244e^-4	0.689	INTRON Pdp1	regulatory region REDfly_CRMs
3R	24708849	3R_24708849_SNP [dm3] 3R_28883127_SNP [dm6]	A	T	2.249e^-4	0.689	UPSTREAM CG14526 DOWNSTREAM CG14527 INTRON CG33203
3R	14677020	3R_14677020_SNP [dm3] 3R_18851298_SNP [dm6]	T	C	2.250e^-4	0.689	UPSTREAM CR45633 DOWNSTREAM CG31226 INTERGENIC
3R	20616570	3R_20616570_INS [dm3] 3R_24790848_INS [dm6]	G	GGTAGTTGCCCTTCGATGAT...	2.253e^-4	0.689	UPSTREAM CG13634 INTRON Ets96B	TF binding site BDTNP1_TFBS_sna
2R	8919062	2R_8919062_SNP [dm3] 2R_13031557_SNP [dm6]	A	T	2.255e^-4	0.689	INTERGENIC
3R	25519993	3R_25519993_INS [dm3] 3R_29694271_INS [dm6]	G	GG	2.259e^-4	0.689	INTRON dmrt99B
3L	6605579	3L_6605579_SNP [dm3] 3L_6612479_SNP [dm6]	C	A	2.259e^-4	0.689	INTRON CG8398	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	3271738	2L_3271738_SNP [dm3] 2L_3271738_SNP [dm6]	T	C	2.263e^-4	0.689	UTR_3_PRIME CG3347
2L	9280160	2L_9280160_SNP [dm3] 2L_9280160_SNP [dm6]	T	A	2.264e^-4	0.689	INTRON Ggamma30A
2R	13803573	2R_13803573_SNP [dm3] 2R_17916068_SNP [dm6]	T	C	2.265e^-4	0.689	INTRON Elk
3R	24557199	3R_24557199_SNP [dm3] 3R_28731477_SNP [dm6]	G	A	2.268e^-4	0.689	INTRON htt
2R	7361627	2R_7361627_SNP [dm3] 2R_11474122_SNP [dm6]	A	G	2.275e^-4	0.689	UPSTREAM inv INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	16656973	2L_16656973_SNP [dm3] 2L_16656973_SNP [dm6]	T	A	2.278e^-4	0.689	UPSTREAM CG42389 INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Ubx
3L	702669	3L_702669_SNP [dm3] 3L_702669_SNP [dm6]	T	C	2.278e^-4	0.689	INTERGENIC
3R	17028945	3R_17028945_SNP [dm3] 3R_21203223_SNP [dm6]	C	T	2.286e^-4	0.689	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	20463660	2L_20463660_SNP [dm3] 2L_20463660_SNP [dm6]	C	T	2.289e^-4	0.689	UPSTREAM CG2493 DOWNSTREAM CR44980 INTERGENIC
2L	14399623	2L_14399623_SNP [dm3] 2L_14399623_SNP [dm6]	A	G	2.291e^-4	0.689	INTRON elB
X	10458841	X_10458841_SNP [dm3] X_10564808_SNP [dm6]	A	G	2.300e^-4	0.689	INTRON spri
3L	13619885	3L_13619885_SNP [dm3] 3L_13626785_SNP [dm6]	G	A	2.310e^-4	0.689	INTRON bru-3
2L	17640158	2L_17640158_SNP [dm3] 2L_17640158_SNP [dm6]	G	A	2.314e^-4	0.689	INTERGENIC
3R	20928520	3R_20928520_SNP [dm3] 3R_25102798_SNP [dm6]	G	A	2.314e^-4	0.689	NON_SYNONYMOUS_CODING CG45095 DOWNSTREAM CG33095 & 2 others
2R	10021899	2R_10021899_INS [dm3] 2R_14134394_INS [dm6]	C	CTG	2.316e^-4	0.689	INTRON Prosap
2R	5706249	2R_5706249_SNP [dm3] 2R_9818744_SNP [dm6]	G	C	2.319e^-4	0.689	DOWNSTREAM lectin-46Ca INTRON CG1648
2R	13396393	2R_13396393_SNP [dm3] 2R_17508888_SNP [dm6]	A	G	2.320e^-4	0.689	UPSTREAM CG34193 DOWNSTREAM CG43164 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	3615771	X_3615771_SNP [dm3] X_3721738_SNP [dm6]	T	G	2.332e^-4	0.689	INTRON tlk
X	3615805	X_3615805_SNP [dm3] X_3721772_SNP [dm6]	G	A	2.332e^-4	0.689	INTRON tlk
3L	690497	3L_690497_SNP [dm3] 3L_690497_SNP [dm6]	C	T	2.335e^-4	0.689	UPSTREAM RabX6 & 1 other DOWNSTREAM Vti1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12758693	3L_12758693_SNP [dm3] 3L_12765593_SNP [dm6]	A	C	2.338e^-4	0.689	SYNONYMOUS_CODING CG32113
3L	12101955	3L_12101955_SNP [dm3] 3L_12108855_SNP [dm6]	G	A	2.338e^-4	0.689	INTERGENIC
3R	14678185	3R_14678185_SNP [dm3] 3R_18852463_SNP [dm6]	T	C	2.339e^-4	0.689	UPSTREAM CG31226 INTERGENIC
3R	25796257	3R_25796257_SNP [dm3] 3R_29970535_SNP [dm6]	T	C	2.341e^-4	0.689	INTERGENIC
3L	4650349	3L_4650349_SNP [dm3] 3L_4650349_SNP [dm6]	G	A	2.345e^-4	0.689	SYNONYMOUS_CODING axo DOWNSTREAM CG32238
3L	681805	3L_681805_SNP [dm3] 3L_681805_SNP [dm6]	G	A	2.347e^-4	0.689	INTRON CG3386	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	17412568	3R_17412568_SNP [dm3] 3R_21586846_SNP [dm6]	G	T	2.355e^-4	0.689	INTRON InR
X	13322289	X_13322289_SNP [dm3] X_13428256_SNP [dm6]	A	T	2.358e^-4	0.689	INTERGENIC
2L	4503737	2L_4503737_SNP [dm3] 2L_4503737_SNP [dm6]	C	T	2.360e^-4	0.689	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11923065	3L_11923065_DEL [dm3] 3L_11929965_DEL [dm6]	AA	A	2.362e^-4	0.689	INTRON CG44837 & 1 other	TF binding site mE1_TFBS_cad
2R	17203805	2R_17203805_SNP [dm3] 2R_21316300_SNP [dm6]	T	G	2.367e^-4	0.689	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	702602	3L_702602_SNP [dm3] 3L_702602_SNP [dm6]	T	C	2.378e^-4	0.69	INTERGENIC
3L	12411303	3L_12411303_SNP [dm3] 3L_12418203_SNP [dm6]	A	T	2.381e^-4	0.69	UPSTREAM ArfGAP1 INTERGENIC	TF binding site mE1_TFBS_cnc
X	5848193	X_5848193_SNP [dm3] X_5954160_SNP [dm6]	G	A	2.387e^-4	0.69	DOWNSTREAM CG6048 INTERGENIC
3R	19826027	3R_19826027_SNP [dm3] 3R_24000305_SNP [dm6]	G	A	2.393e^-4	0.69	SYNONYMOUS_CODING KrT95D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16148943	2R_16148943_SNP [dm3] 2R_20261438_SNP [dm6]	A	T	2.395e^-4	0.69	UTR_3_PRIME Hsl DOWNSTREAM PCNA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6643912	2R_6643912_SNP [dm3] 2R_10756407_SNP [dm6]	G	A	2.397e^-4	0.69	SPLICE_SITE_REGION CG33144 INTRON CG33144	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8072721	3R_8072721_SNP [dm3] 3R_12246999_SNP [dm6]	C	T	2.400e^-4	0.69	INTERGENIC
2L	4502979	2L_4502979_SNP [dm3] 2L_4502979_SNP [dm6]	A	T	2.405e^-4	0.69	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1173331	3L_1173331_SNP [dm3] 3L_1173331_SNP [dm6]	A	G	2.405e^-4	0.69	SYNONYMOUS_CODING bab2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3267561	2L_3267561_SNP [dm3] 2L_3267561_SNP [dm6]	A	T	2.415e^-4	0.69	UPSTREAM CR44484 INTERGENIC
2L	4502644	2L_4502644_SNP [dm3] 2L_4502644_SNP [dm6]	G	A	2.416e^-4	0.69	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17348703	2R_17348703_SNP [dm3] 2R_21461198_SNP [dm6]	T	G	2.418e^-4	0.69	INTRON Sdc	TF binding site BDTNP1_TFBS_twi
2L	4517324	2L_4517324_SNP [dm3] 2L_4517324_SNP [dm6]	A	G	2.421e^-4	0.69	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	13946729	3L_13946729_SNP [dm3] 3L_13953629_SNP [dm6]	G	T	2.422e^-4	0.69	INTRON CG32137
X	14844869	X_14844869_SNP [dm3] X_14950836_SNP [dm6]	G	T	2.424e^-4	0.69	UTR_5_PRIME pdgy UPSTREAM pdgy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	4936384	X_4936384_INS [dm3] X_5042351_INS [dm6]	T	TGTTTTTG	2.436e^-4	0.692	INTRON CR44833	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	3618263	X_3618263_SNP [dm3] X_3724230_SNP [dm6]	C	T	2.443e^-4	0.692	UPSTREAM tlk INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	12742164	3L_12742164_SNP [dm3] 3L_12749064_SNP [dm6]	C	T	2.452e^-4	0.692	UPSTREAM Klc INTRON Klc
3R	20936442	3R_20936442_SNP [dm3] 3R_25110720_SNP [dm6]	A	T	2.453e^-4	0.692	INTRON CG13650
2L	7020667	2L_7020667_SNP [dm3] 2L_7020667_SNP [dm6]	C	A	2.454e^-4	0.692	INTRON ade3
3R	25535422	3R_25535422_SNP [dm3] 3R_29709700_SNP [dm6]	T	G	2.461e^-4	0.692	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8935389	3L_8935389_SNP [dm3] 3L_8942289_SNP [dm6]	G	C	2.462e^-4	0.692	UTR_3_PRIME orb2 DOWNSTREAM orb2 INTRON CG43783
2L	7998838	2L_7998838_SNP [dm3] 2L_7998838_SNP [dm6]	G	T	2.465e^-4	0.692	UPSTREAM Sirup & 1 other DOWNSTREAM Wwox INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	17653757	3R_17653757_SNP [dm3] 3R_21828035_SNP [dm6]	A	T	2.469e^-4	0.692	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	701695	3L_701695_SNP [dm3] 3L_701695_SNP [dm6]	A	T	2.480e^-4	0.692	INTERGENIC
2R	6767244	2R_6767244_SNP [dm3] 2R_10879739_SNP [dm6]	A	C	2.481e^-4	0.692	UPSTREAM Pex6 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	24176849	3R_24176849_SNP [dm3] 3R_28351127_SNP [dm6]	G	A	2.484e^-4	0.692	INTERGENIC
2L	2745418	2L_2745418_SNP [dm3] 2L_2745418_SNP [dm6]	A	G	2.484e^-4	0.692	SYNONYMOUS_CODING Cwc25 UPSTREAM CG9961	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	1867941	3R_1867941_SNP [dm3] 3R_6042219_SNP [dm6]	A	G	2.487e^-4	0.692	INTERGENIC
X	10185262	X_10185262_SNP [dm3] X_10291229_SNP [dm6]	G	A	2.487e^-4	0.692	INTRON alpha-Man-I
3L	19338886	3L_19338886_SNP [dm3] 3L_19345786_SNP [dm6]	C	G	2.495e^-4	0.692	INTRON CG32206
3L	2173820	3L_2173820_SNP [dm3] 3L_2173820_SNP [dm6]	T	C	2.511e^-4	0.692	NON_SYNONYMOUS_CODING CG15820	TF binding site mE1_TFBS_cad
2L	20464351	2L_20464351_SNP [dm3] 2L_20464351_SNP [dm6]	C	T	2.519e^-4	0.692	UPSTREAM CG2493 DOWNSTREAM CR44980 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	695222	3L_695222_SNP [dm3] 3L_695222_SNP [dm6]	G	T	2.522e^-4	0.692	INTRON CG13894	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	14552903	2R_14552903_SNP [dm3] 2R_18665398_SNP [dm6]	G	A	2.524e^-4	0.692	SYNONYMOUS_CODING CG33136	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4011695	2L_4011695_INS [dm3] 2L_4011695_INS [dm6]	G	GAGCAAGTGG	2.527e^-4	0.692	INTERGENIC
2L	4503259	2L_4503259_SNP [dm3] 2L_4503259_SNP [dm6]	C	T	2.529e^-4	0.692	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	20878431	X_20878431_SNP [dm3] X_21007404_SNP [dm6]	T	C	2.531e^-4	0.692	INTERGENIC
3R	10554116	3R_10554116_DEL [dm3] 3R_14728394_DEL [dm6]	AGACATTCGTTAAGA...	G	2.534e^-4	0.692	INTRON CG7530
3R	20919897	3R_20919897_SNP [dm3] 3R_25094175_SNP [dm6]	T	G	2.535e^-4	0.692	UPSTREAM fd96Cb INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	22471550	3R_22471550_SNP [dm3] 3R_26645828_SNP [dm6]	T	A	2.538e^-4	0.692	UTR_3_PRIME beat-VII	TF binding site mE1_TFBS_kn
3L	7841780	3L_7841780_SNP [dm3] 3L_7848680_SNP [dm6]	A	T	2.539e^-4	0.692	INTRON Pdp1	regulatory region REDfly_CRMs
3R	1933328	3R_1933328_SNP [dm3] 3R_6107606_SNP [dm6]	G	A	2.541e^-4	0.692	UPSTREAM Obp83cd INTERGENIC	regulatory region REDfly_CRMs
3R	14684080	3R_14684080_SNP [dm3] 3R_18858358_SNP [dm6]	T	C	2.542e^-4	0.692	INTERGENIC
2R	2051002	2R_2051002_SNP [dm3] 2R_6163497_SNP [dm6]	A	C	2.543e^-4	0.692	UPSTREAM tRNA:K2:42Ac DOWNSTREAM tRNA:N5:42Aa INTRON EcR	transposable element FlyBase
3L	16493191	3L_16493191_SNP [dm3] 3L_16500091_SNP [dm6]	G	T	2.555e^-4	0.694	NON_SYNONYMOUS_CODING st INTRON CG43373
2R	6931096	2R_6931096_SNP [dm3] 2R_11043591_SNP [dm6]	A	T	2.555e^-4	0.694	INTRON luna	TF binding site mE1_TFBS_cad
X	22040318	X_22040318_SNP [dm3] X_22638482_SNP [dm6]	G	A	2.579e^-4	0.699	INTERGENIC	transposable element FlyBase
3L	14592781	3L_14592781_SNP [dm3] 3L_14599681_SNP [dm6]	G	T	2.582e^-4	0.699	UPSTREAM HGTX INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	5295761	2R_5295761_SNP [dm3] 2R_9408256_SNP [dm6]	A	G	2.586e^-4	0.699	INTRON wun	TF binding site BDTNP1_TFBS_dl
3R	22804564	3R_22804564_SNP [dm3] 3R_26978842_SNP [dm6]	C	A	2.600e^-4	0.699	NON_SYNONYMOUS_CODING CG14253 DOWNSTREAM CG5521
2R	10021914	2R_10021914_INS [dm3] 2R_14134409_INS [dm6]	TC	AAGT	2.604e^-4	0.699	INTRON Prosap
3R	22807596	3R_22807596_SNP [dm3] 3R_26981874_SNP [dm6]	G	A	2.604e^-4	0.699	INTRON CG14253
2L	18031683	2L_18031683_SNP [dm3] 2L_18031683_SNP [dm6]	A	C	2.608e^-4	0.699	INTRON rdo
3R	12209847	3R_12209847_SNP [dm3] 3R_16384125_SNP [dm6]	G	T	2.617e^-4	0.699	INTRON ss	regulatory region REDfly_CRMs
X	3439014	X_3439014_DEL [dm3] X_3544981_DEL [dm6]	TT	T	2.618e^-4	0.699	DOWNSTREAM CR34335 INTRON CG32791
2L	3267502	2L_3267502_SNP [dm3] 2L_3267502_SNP [dm6]	C	T	2.619e^-4	0.699	UPSTREAM CR44484 INTERGENIC
2R	8876101	2R_8876101_SNP [dm3] 2R_12988596_SNP [dm6]	T	A	2.620e^-4	0.699	INTERGENIC
3R	23253412	3R_23253412_SNP [dm3] 3R_27427690_SNP [dm6]	A	T	2.625e^-4	0.699	INTRON side
3R	14668193	3R_14668193_SNP [dm3] 3R_18842471_SNP [dm6]	C	T	2.630e^-4	0.699	INTRON CG18208
2L	4503688	2L_4503688_SNP [dm3] 2L_4503688_SNP [dm6]	C	G	2.632e^-4	0.699	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7842167	3L_7842167_SNP [dm3] 3L_7849067_SNP [dm6]	A	G	2.636e^-4	0.699	INTRON Pdp1	regulatory region REDfly_CRMs
2L	15364347	2L_15364347_SNP [dm3] 2L_15364347_SNP [dm6]	A	G	2.638e^-4	0.699	INTERGENIC
X	13905636	X_13905636_SNP [dm3] X_14011603_SNP [dm6]	G	A	2.639e^-4	0.699	INTERGENIC
X	17231529	X_17231529_SNP [dm3] X_17337496_SNP [dm6]	T	C	2.641e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	26625660	3R_26625660_SNP [dm3] 3R_30799938_SNP [dm6]	T	G	2.650e^-4	0.699	INTRON wts
3L	9540334	3L_9540334_SNP [dm3] 3L_9547234_SNP [dm6]	G	T	2.650e^-4	0.699	UTR_5_PRIME CG42673	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6949691	2R_6949691_SNP [dm3] 2R_11062186_SNP [dm6]	G	A	2.656e^-4	0.699	INTRON luna
X	9161888	X_9161888_SNP [dm3] X_9267855_SNP [dm6]	C	T	2.660e^-4	0.699	UPSTREAM Erk7 DOWNSTREAM CG17440 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	7026997	2R_7026997_SNP [dm3] 2R_11139492_SNP [dm6]	A	G	2.662e^-4	0.699	UTR_3_PRIME CG13229 DOWNSTREAM CG13229 & 1 other
3R	25187832	3R_25187832_SNP [dm3] 3R_29362110_SNP [dm6]	A	G	2.671e^-4	0.699	INTERGENIC
3R	14677675	3R_14677675_SNP [dm3] 3R_18851953_SNP [dm6]	G	A	2.677e^-4	0.699	UPSTREAM CR45633 & 1 other INTERGENIC
2L	16861536	2L_16861536_SNP [dm3] 2L_16861536_SNP [dm6]	A	T	2.677e^-4	0.699	UPSTREAM CG6012 INTRON CR43858	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
X	5326902	X_5326902_INS [dm3] X_5432869_INS [dm6]	T	TT	2.678e^-4	0.699	UPSTREAM CR44471 DOWNSTREAM CG15784 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	23936906	3R_23936906_SNP [dm3] 3R_28111184_SNP [dm6]	T	G	2.684e^-4	0.699	INTERGENIC
3L	9881808	3L_9881808_SNP [dm3] 3L_9888708_SNP [dm6]	A	C	2.686e^-4	0.699	UPSTREAM CalpB & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	19088328	3R_19088328_SNP [dm3] 3R_23262606_SNP [dm6]	G	A	2.686e^-4	0.699	UTR_3_PRIME orb
2R	10207967	2R_10207967_SNP [dm3] 2R_14320462_SNP [dm6]	C	T	2.694e^-4	0.699	INTRON Shroom
2R	14553350	2R_14553350_SNP [dm3] 2R_18665845_SNP [dm6]	A	C	2.697e^-4	0.699	UPSTREAM CG33136 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sbb
2R	19018935	2R_19018935_SNP [dm3] 2R_23131412_SNP [dm6]	T	G	2.698e^-4	0.699	INTERGENIC
2L	3267474	2L_3267474_SNP [dm3] 2L_3267474_SNP [dm6]	G	C	2.712e^-4	0.7	UPSTREAM CR44484 INTERGENIC
3R	22267887	3R_22267887_SNP [dm3] 3R_26442165_SNP [dm6]	G	T	2.713e^-4	0.7	INTRON tx
2R	10553081	2R_10553081_SNP [dm3] 2R_14665576_SNP [dm6]	A	T	2.719e^-4	0.7	UPSTREAM CG12861 DOWNSTREAM CG12860 INTERGENIC
3L	18268863	3L_18268863_SNP [dm3] 3L_18275763_SNP [dm6]	T	C	2.725e^-4	0.7	INTERGENIC
2L	16214691	2L_16214691_SNP [dm3] 2L_16214691_SNP [dm6]	C	T	2.725e^-4	0.7	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8935392	3L_8935392_SNP [dm3] 3L_8942292_SNP [dm6]	T	C	2.728e^-4	0.7	UTR_3_PRIME orb2 DOWNSTREAM orb2 INTRON CG43783
3R	15194508	3R_15194508_SNP [dm3] 3R_19368786_SNP [dm6]	T	A	2.732e^-4	0.7	DOWNSTREAM Ino80 INTERGENIC
X	7244915	X_7244915_SNP [dm3] X_7350882_SNP [dm6]	T	A	2.745e^-4	0.7	INTRON CR44357 & 1 other
2L	18311149	2L_18311149_SNP [dm3] 2L_18311149_SNP [dm6]	C	T	2.745e^-4	0.7	DOWNSTREAM CR44695 EXON CR45721	TF binding site BDTNP1_TFBS_twi
3L	12411234	3L_12411234_SNP [dm3] 3L_12418134_SNP [dm6]	T	A	2.745e^-4	0.7	UPSTREAM ArfGAP1 INTERGENIC	TF binding site mE1_TFBS_cnc
2L	7440907	2L_7440907_SNP [dm3] 2L_7440907_SNP [dm6]	T	A	2.749e^-4	0.7	UTR_5_PRIME CG5973 INTRON CG5973
3L	14203458	3L_14203458_SNP [dm3] 3L_14210358_SNP [dm6]	T	A	2.751e^-4	0.7	INTRON nuf
2L	12052905	2L_12052905_SNP [dm3] 2L_12052905_SNP [dm6]	T	C	2.752e^-4	0.7	SYNONYMOUS_CODING JhI-21 DOWNSTREAM CG14945
2L	3929737	2L_3929737_SNP [dm3] 2L_3929737_SNP [dm6]	A	G	2.758e^-4	0.7	INTRON fred
2L	13986032	2L_13986032_SNP [dm3] 2L_13986032_SNP [dm6]	A	T	2.760e^-4	0.7	INTRON rk
2R	20374816	2R_20374816_SNP [dm3] 2R_24487293_SNP [dm6]	T	A	2.762e^-4	0.7	INTRON CG13579	TF binding site mE1_TFBS_cad
X	13107809	X_13107809_SNP [dm3] X_13213776_SNP [dm6]	G	A	2.767e^-4	0.7	UTR_3_PRIME REG DOWNSTREAM mew	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10554261	3R_10554261_SNP [dm3] 3R_14728539_SNP [dm6]	T	A	2.774e^-4	0.701	INTRON CG7530
2L	3897105	2L_3897105_SNP [dm3] 2L_3897105_SNP [dm6]	C	T	2.777e^-4	0.701	UPSTREAM capu INTRON capu
3R	24800392	3R_24800392_SNP [dm3] 3R_28974670_SNP [dm6]	G	T	2.791e^-4	0.701	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	13464813	3R_13464813_SNP [dm3] 3R_17639091_SNP [dm6]	T	C	2.792e^-4	0.701	INTRON CG43175 EXON CR45222
3L	11807916	3L_11807916_SNP [dm3] 3L_11814816_SNP [dm6]	G	A	2.793e^-4	0.701	UPSTREAM CG14130 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	711367	3L_711367_SNP [dm3] 3L_711367_SNP [dm6]	T	C	2.812e^-4	0.701	NON_SYNONYMOUS_CODING CG13896 UPSTREAM CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3R	16835447	3R_16835447_SNP [dm3] 3R_21009725_SNP [dm6]	T	A	2.834e^-4	0.701	UTR_3_PRIME Calx INTRON Calx
2L	9280130	2L_9280130_SNP [dm3] 2L_9280130_SNP [dm6]	A	T	2.841e^-4	0.701	INTRON Ggamma30A
X	21861771	X_21861771_SNP [dm3] X_22459935_SNP [dm6]	G	A	2.843e^-4	0.701	INTRON CG14619	transposable element FlyBase
2L	14455135	2L_14455135_SNP [dm3] 2L_14455135_SNP [dm6]	G	T	2.849e^-4	0.701	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3L	2440573	3L_2440573_SNP [dm3] 3L_2440573_SNP [dm6]	T	G	2.858e^-4	0.701	INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	17142264	2R_17142264_SNP [dm3] 2R_21254759_SNP [dm6]	G	C	2.858e^-4	0.701	UPSTREAM Rgk3 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	2647275	3L_2647275_SNP [dm3] 3L_2647275_SNP [dm6]	G	A	2.859e^-4	0.701	UPSTREAM CG1246 DOWNSTREAM CG1143 INTERGENIC
3R	25605407	3R_25605407_SNP [dm3] 3R_29779685_SNP [dm6]	A	G	2.862e^-4	0.701	SYNONYMOUS_CODING fig INTRON kay	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7538310	2L_7538310_SNP [dm3] 2L_7538310_SNP [dm6]	G	T	2.866e^-4	0.701	INTRON RapGAP1
3L	9190273	3L_9190273_SNP [dm3] 3L_9197173_SNP [dm6]	C	A	2.870e^-4	0.701	INTERGENIC
2R	14667046	2R_14667046_SNP [dm3] 2R_18779541_SNP [dm6]	A	G	2.880e^-4	0.701	INTERGENIC
3R	23323189	3R_23323189_SNP [dm3] 3R_27497467_SNP [dm6]	A	C	2.880e^-4	0.701	INTERGENIC
X	20891381	X_20891381_SNP [dm3] X_21020354_SNP [dm6]	C	T	2.881e^-4	0.701	INTERGENIC
3R	14544537	3R_14544537_SNP [dm3] 3R_18718815_SNP [dm6]	C	T	2.883e^-4	0.701	UTR_3_PRIME VAChT INTRON Cha
2R	9022799	2R_9022799_SNP [dm3] 2R_13135294_SNP [dm6]	A	C	2.889e^-4	0.701	SYNONYMOUS_CODING Cap-G	TF binding site mE1_TFBS_sens
3R	15246130	3R_15246130_SNP [dm3] 3R_19420408_SNP [dm6]	T	G	2.894e^-4	0.701	INTRON CG31221
2R	11153466	2R_11153466_SNP [dm3] 2R_15265961_SNP [dm6]	A	T	2.896e^-4	0.701	SYNONYMOUS_CODING Trpm DOWNSTREAM Trpm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9123351	2R_9123351_SNP [dm3] 2R_13235846_SNP [dm6]	T	G	2.898e^-4	0.701	UPSTREAM CG4676 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7338482	2L_7338482_SNP [dm3] 2L_7338482_SNP [dm6]	A	G	2.901e^-4	0.701	INTRON Wnt6
3L	10741742	3L_10741742_SNP [dm3] 3L_10748642_SNP [dm6]	C	A	2.904e^-4	0.701	INTERGENIC
2R	16076027	2R_16076027_SNP [dm3] 2R_20188522_SNP [dm6]	C	A	2.905e^-4	0.701	INTERGENIC
3R	14738911	3R_14738911_SNP [dm3] 3R_18913189_SNP [dm6]	T	A	2.915e^-4	0.701	UPSTREAM CG14291 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	15879546	3L_15879546_SNP [dm3] 3L_15886446_SNP [dm6]	G	A	2.922e^-4	0.701	UPSTREAM CR44050 INTRON pHCl
X	21127085	X_21127085_SNP [dm3] X_21256058_SNP [dm6]	T	A	2.927e^-4	0.701	INTRON CG32521
2L	12016088	2L_12016088_SNP [dm3] 2L_12016088_SNP [dm6]	T	C	2.932e^-4	0.701	SYNONYMOUS_CODING CG6734
3R	24125951	3R_24125951_SNP [dm3] 3R_28300229_SNP [dm6]	C	T	2.936e^-4	0.701	INTERGENIC
2R	3455052	2R_3455052_SNP [dm3] 2R_7567547_SNP [dm6]	A	T	2.943e^-4	0.701	UPSTREAM boca INTRON Vps13	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	12828962	3R_12828962_SNP [dm3] 3R_17003240_SNP [dm6]	A	G	2.947e^-4	0.701	UPSTREAM CG16941 INTRON Irc	TF binding site mE1_TFBS_HSA
3R	8512591	3R_8512591_SNP [dm3] 3R_12686869_SNP [dm6]	G	A	2.955e^-4	0.701	INTRON kar	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10573735	2R_10573735_SNP [dm3] 2R_14686230_SNP [dm6]	G	A	2.962e^-4	0.701	INTRON mspo
3L	2660554	3L_2660554_SNP [dm3] 3L_2660554_SNP [dm6]	C	T	2.962e^-4	0.701	SYNONYMOUS_CODING CG33233 UTR_3_PRIME CG33233 INTRON Fife
3R	16245295	3R_16245295_SNP [dm3] 3R_20419573_SNP [dm6]	A	G	2.963e^-4	0.701	INTRON Gfrl
2R	15702306	2R_15702306_SNP [dm3] 2R_19814801_SNP [dm6]	G	C	2.964e^-4	0.701	UPSTREAM Obp56h INTERGENIC	regulatory region REDfly_CRMs
2L	13986062	2L_13986062_SNP [dm3] 2L_13986062_SNP [dm6]	G	C	2.968e^-4	0.701	SPLICE_SITE_REGION rk INTRON rk
2L	930406	2L_930406_SNP [dm3] 2L_930406_SNP [dm6]	T	C	2.974e^-4	0.701	SYNONYMOUS_CODING CG4341 INTRON CG4341
2L	7536026	2L_7536026_SNP [dm3] 2L_7536026_SNP [dm6]	C	G	2.975e^-4	0.701	INTRON RapGAP1	TF binding site mE1_TFBS_cad
2L	11772732	2L_11772732_INS [dm3] 2L_11772732_INS [dm6]	A	AA	2.976e^-4	0.701	INTERGENIC
X	2028065	X_2028065_SNP [dm3] X_2134032_SNP [dm6]	G	A	2.976e^-4	0.701	INTRON ph-p	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	17251163	3R_17251163_SNP [dm3] 3R_21425441_SNP [dm6]	G	A	2.980e^-4	0.701	DOWNSTREAM lbl INTRON lbl
2L	17594011	2L_17594011_SNP [dm3] 2L_17594011_SNP [dm6]	A	G	2.983e^-4	0.701	UPSTREAM Sytalpha INTRON Sytalpha
3R	15673811	3R_15673811_SNP [dm3] 3R_19848089_SNP [dm6]	A	G	2.986e^-4	0.701	INTRON CG4662	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	15527916	2R_15527916_SNP [dm3] 2R_19640411_SNP [dm6]	A	C	2.987e^-4	0.701	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	704377	3L_704377_SNP [dm3] 3L_704377_SNP [dm6]	T	A	2.990e^-4	0.701	UPSTREAM CR44514 INTERGENIC
2L	12325195	2L_12325195_INS [dm3] 2L_12325195_INS [dm6]	A	ACGTAAAGCAAAATATTTTC...	2.996e^-4	0.701	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2440393	3L_2440393_SNP [dm3] 3L_2440393_SNP [dm6]	T	A	2.999e^-4	0.701	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco
2L	11843485	2L_11843485_SNP [dm3] 2L_11843485_SNP [dm6]	C	A	3.000e^-4	0.701	START_GAINED CG42486 UTR_5_PRIME CG42486 UTR_3_PRIME CG14933 UPSTREAM CG42486 INTRON Pde1c
2L	18030256	2L_18030256_SNP [dm3] 2L_18030256_SNP [dm6]	T	C	3.007e^-4	0.701	INTRON rdo
3L	11923036	3L_11923036_SNP [dm3] 3L_11929936_SNP [dm6]	G	T	3.009e^-4	0.701	INTRON CG44837 & 1 other	TF binding site mE1_TFBS_cad
2L	4011808	2L_4011808_SNP [dm3] 2L_4011808_SNP [dm6]	G	A	3.010e^-4	0.701	INTERGENIC
X	2034229	X_2034229_SNP [dm3] X_2140196_SNP [dm6]	C	T	3.010e^-4	0.701	INTERGENIC	regulatory region FlyBase TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	3937233	2L_3937233_SNP [dm3] 2L_3937233_SNP [dm6]	A	G	3.012e^-4	0.701	INTRON fred
3L	5287000	3L_5287000_SNP [dm3] 3L_5293900_SNP [dm6]	C	T	3.020e^-4	0.701	INTERGENIC
2R	13840498	2R_13840498_SNP [dm3] 2R_17952993_SNP [dm6]	G	A	3.022e^-4	0.701	INTERGENIC
3R	18393439	3R_18393439_SNP [dm3] 3R_22567717_SNP [dm6]	T	A	3.024e^-4	0.701	INTERGENIC
X	13695315	X_13695315_SNP [dm3] X_13801282_SNP [dm6]	C	T	3.025e^-4	0.701	INTRON inaE
X	18372628	X_18372628_SNP [dm3] X_18478595_SNP [dm6]	G	T	3.025e^-4	0.701	INTRON CG32547
X	10186022	X_10186022_SNP [dm3] X_10291989_SNP [dm6]	T	A	3.027e^-4	0.701	INTRON alpha-Man-I
2L	5592326	2L_5592326_SNP [dm3] 2L_5592326_SNP [dm6]	A	T	3.034e^-4	0.701	INTERGENIC
2L	12302573	2L_12302573_SNP [dm3] 2L_12302573_SNP [dm6]	T	C	3.036e^-4	0.701	INTRON aret
3L	7428896	3L_7428896_SNP [dm3] 3L_7435796_SNP [dm6]	T	G	3.038e^-4	0.701	UPSTREAM Rac2 INTRON CG42458	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
3R	15025616	3R_15025616_SNP [dm3] 3R_19199894_SNP [dm6]	G	A	3.040e^-4	0.701	INTRON CG31475
3L	1024658	3L_1024658_SNP [dm3] 3L_1024658_SNP [dm6]	G	A	3.041e^-4	0.701	SYNONYMOUS_CODING trio	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	2645997	3L_2645997_SNP [dm3] 3L_2645997_SNP [dm6]	G	T	3.042e^-4	0.701	NON_SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24082950	3R_24082950_SNP [dm3] 3R_28257228_SNP [dm6]	G	A	3.045e^-4	0.701	INTERGENIC
3R	2328042	3R_2328042_SNP [dm3] 3R_6502320_SNP [dm6]	C	T	3.049e^-4	0.701	INTERGENIC
2L	21056844	2L_21056844_SNP [dm3] 2L_21056844_SNP [dm6]	A	G	3.059e^-4	0.701	NON_SYNONYMOUS_CODING Itgbetanu DOWNSTREAM CG9265	TF binding site mE1_TFBS_sens
X	16147923	X_16147923_SNP [dm3] X_16253890_SNP [dm6]	A	G	3.066e^-4	0.701	UPSTREAM snRNA:U2:14B DOWNSTREAM snRNA:U5:14B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	5403059	2L_5403059_SNP [dm3] 2L_5403059_SNP [dm6]	C	A	3.068e^-4	0.701	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	7873055	3L_7873055_SNP [dm3] 3L_7879955_SNP [dm6]	G	A	3.072e^-4	0.701	INTRON CG32365
2R	9910152	2R_9910152_SNP [dm3] 2R_14022647_SNP [dm6]	C	T	3.073e^-4	0.701	INTRON mam
3L	5088602	3L_5088602_SNP [dm3] 3L_5088602_SNP [dm6]	C	T	3.091e^-4	0.701	INTERGENIC
3R	26878386	3R_26878386_SNP [dm3] 3R_31052664_SNP [dm6]	T	A	3.093e^-4	0.701	UTR_3_PRIME l_3_03670 DOWNSTREAM Aph-4	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	14678660	3R_14678660_SNP [dm3] 3R_18852938_SNP [dm6]	A	T	3.093e^-4	0.701	INTERGENIC
2R	8925197	2R_8925197_SNP [dm3] 2R_13037692_SNP [dm6]	A	T	3.098e^-4	0.701	INTERGENIC
2R	8778759	2R_8778759_SNP [dm3] 2R_12891254_SNP [dm6]	C	A	3.099e^-4	0.701	INTRON vg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26878414	3R_26878414_SNP [dm3] 3R_31052692_SNP [dm6]	C	T	3.101e^-4	0.701	UTR_3_PRIME l_3_03670 DOWNSTREAM Aph-4	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	4502560	2L_4502560_SNP [dm3] 2L_4502560_SNP [dm6]	G	C	3.110e^-4	0.701	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1551401	3L_1551401_SNP [dm3] 3L_1551401_SNP [dm6]	C	T	3.111e^-4	0.701	INTRON Cct1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	11205139	X_11205139_SNP [dm3] X_11311106_SNP [dm6]	G	T	3.115e^-4	0.701	NON_SYNONYMOUS_CODING Ir10a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12015994	2L_12015994_SNP [dm3] 2L_12015994_SNP [dm6]	G	T	3.117e^-4	0.701	NON_SYNONYMOUS_CODING CG6734
2R	14535046	2R_14535046_SNP [dm3] 2R_18647541_SNP [dm6]	A	T	3.123e^-4	0.701	INTRON SP2637	TF binding site BDTNP1_TFBS_twi
3R	27458721	3R_27458721_SNP [dm3] 3R_31632999_SNP [dm6]	A	G	3.127e^-4	0.701	INTRON kek6
2L	9811726	2L_9811726_SNP [dm3] 2L_9811726_SNP [dm6]	A	G	3.129e^-4	0.701	INTRON nAChRalpha6
3L	22169377	3L_22169377_SNP [dm3] 3L_22176277_SNP [dm6]	A	C	3.136e^-4	0.701	INTRON olf413	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_Ubx
X	21861772	X_21861772_SNP [dm3] X_22459936_SNP [dm6]	T	G	3.138e^-4	0.701	INTRON CG14619	transposable element FlyBase
3L	3136016	3L_3136016_SNP [dm3] 3L_3136016_SNP [dm6]	T	A	3.141e^-4	0.701	INTRON CG11537
X	19230563	X_19230563_SNP [dm3] X_19336530_SNP [dm6]	T	C	3.145e^-4	0.701	INTRON nAChRalpha7
2L	14248994	2L_14248994_SNP [dm3] 2L_14248994_SNP [dm6]	A	G	3.150e^-4	0.701	INTERGENIC
3R	1941425	3R_1941425_SNP [dm3] 3R_6115703_SNP [dm6]	A	C	3.153e^-4	0.701	INTERGENIC
2L	10943478	2L_10943478_SNP [dm3] 2L_10943478_SNP [dm6]	T	A	3.153e^-4	0.701	UPSTREAM CR44492 INTRON dpr2 EXON CR44493
3R	22295112	3R_22295112_SNP [dm3] 3R_26469390_SNP [dm6]	G	A	3.153e^-4	0.701	SYNONYMOUS_CODING CG5455 DOWNSTREAM plum
2L	10294156	2L_10294156_SNP [dm3] 2L_10294156_SNP [dm6]	G	A	3.155e^-4	0.701	INTRON Hand	regulatory region REDfly_CRMs
3R	11283513	3R_11283513_SNP [dm3] 3R_15457791_SNP [dm6]	A	T	3.156e^-4	0.701	INTRON AdamTS-A
X	19574686	X_19574686_SNP [dm3] X_19680653_SNP [dm6]	A	C	3.161e^-4	0.701	INTRON dome	regulatory region REDfly_CRMs
2R	9251317	2R_9251317_SNP [dm3] 2R_13363812_SNP [dm6]	G	A	3.161e^-4	0.701	UPSTREAM CR45312 INTERGENIC
3R	19539588	3R_19539588_SNP [dm3] 3R_23713866_SNP [dm6]	A	G	3.165e^-4	0.701	DOWNSTREAM CG10300 INTRON nau
3R	3751465	3R_3751465_DEL [dm3] 3R_7925743_DEL [dm6]	GAGGT	G	3.167e^-4	0.701	INTRON dsx
3R	14676973	3R_14676973_SNP [dm3] 3R_18851251_SNP [dm6]	G	C	3.169e^-4	0.701	UPSTREAM CR45633 DOWNSTREAM CG31226 INTERGENIC
3L	1031240	3L_1031240_SNP [dm3] 3L_1031240_SNP [dm6]	G	A	3.174e^-4	0.701	INTRON trio	TF binding site mE1_TFBS_sens
3R	22119527	3R_22119527_SNP [dm3] 3R_26293805_SNP [dm6]	A	C	3.176e^-4	0.701	INTERGENIC
3R	25825919	3R_25825919_SNP [dm3] 3R_30000197_SNP [dm6]	C	T	3.183e^-4	0.701	UPSTREAM Tace DOWNSTREAM CG11504 INTRON CG34298	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	3930157	2L_3930157_SNP [dm3] 2L_3930157_SNP [dm6]	G	T	3.186e^-4	0.701	INTRON fred
3L	10290115	3L_10290115_SNP [dm3] 3L_10297015_SNP [dm6]	G	T	3.198e^-4	0.701	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	4502078	2L_4502078_SNP [dm3] 2L_4502078_SNP [dm6]	G	A	3.208e^-4	0.701	INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	3842477	2L_3842477_SNP [dm3] 2L_3842477_SNP [dm6]	T	C	3.210e^-4	0.701	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14677883	3R_14677883_SNP [dm3] 3R_18852161_SNP [dm6]	G	T	3.211e^-4	0.701	UPSTREAM CR45633 & 1 other INTERGENIC
3R	19907414	3R_19907414_SNP [dm3] 3R_24081692_SNP [dm6]	T	G	3.218e^-4	0.701	INTRON 4EHP
2L	19278564	2L_19278564_SNP [dm3] 2L_19278564_SNP [dm6]	C	A	3.220e^-4	0.701	INTERGENIC
3R	26530370	3R_26530370_SNP [dm3] 3R_30704648_SNP [dm6]	T	C	3.221e^-4	0.701	DOWNSTREAM CG31010 INTERGENIC
3L	12809861	3L_12809861_SNP [dm3] 3L_12816761_SNP [dm6]	G	T	3.221e^-4	0.701	SYNONYMOUS_CODING CG42588	TF binding site mE1_TFBS_sens
X	14997932	X_14997932_SNP [dm3] X_15103899_SNP [dm6]	A	G	3.222e^-4	0.701	INTRON Rab3-GEF
3L	9808771	3L_9808771_SNP [dm3] 3L_9815671_SNP [dm6]	T	A	3.227e^-4	0.701	UPSTREAM CG43897 INTRON CG43897
2R	9910110	2R_9910110_SNP [dm3] 2R_14022605_SNP [dm6]	A	G	3.227e^-4	0.701	INTRON mam
2L	14236373	2L_14236373_SNP [dm3] 2L_14236373_SNP [dm6]	G	T	3.229e^-4	0.701	DOWNSTREAM CR44728 INTERGENIC
2L	3850559	2L_3850559_SNP [dm3] 2L_3850559_SNP [dm6]	G	A	3.229e^-4	0.701	INTERGENIC
2L	7722775	2L_7722775_SNP [dm3] 2L_7722775_SNP [dm6]	A	G	3.236e^-4	0.701	UTR_5_PRIME CG13794 DOWNSTREAM CG13795
3R	21122066	3R_21122066_SNP [dm3] 3R_25296344_SNP [dm6]	G	A	3.239e^-4	0.701	SYNONYMOUS_CODING CG31097 UPSTREAM CG31102
3R	20608614	3R_20608614_SNP [dm3] 3R_24782892_SNP [dm6]	A	T	3.241e^-4	0.701	NON_SYNONYMOUS_CODING CG42331	TF binding site mE1_TFBS_cad
2R	16498085	2R_16498085_SNP [dm3] 2R_20610580_SNP [dm6]	G	A	3.243e^-4	0.701	INTRON Hil
3L	13128463	3L_13128463_SNP [dm3] 3L_13135363_SNP [dm6]	G	A	3.244e^-4	0.701	UPSTREAM CG33262 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6965575	3L_6965575_SNP [dm3] 3L_6972475_SNP [dm6]	A	G	3.250e^-4	0.701	UPSTREAM CG10063 DOWNSTREAM CG9953 & 1 other INTERGENIC
3R	24562105	3R_24562105_SNP [dm3] 3R_28736383_SNP [dm6]	C	A	3.267e^-4	0.701	DOWNSTREAM AstA-R2 INTERGENIC
3L	21481094	3L_21481094_INS [dm3] 3L_21487994_INS [dm6]	C	CGCAC	3.279e^-4	0.701	DOWNSTREAM Neu2 INTRON Neu2	transposable element FlyBase
3R	23847084	3R_23847084_SNP [dm3] 3R_28021362_SNP [dm6]	T	A	3.283e^-4	0.701	INTERGENIC
3R	26272919	3R_26272919_SNP [dm3] 3R_30447197_SNP [dm6]	G	A	3.289e^-4	0.701	INTRON aralar1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	11178193	X_11178193_SNP [dm3] X_11284160_SNP [dm6]	T	A	3.289e^-4	0.701	INTRON CG44422
2L	9281592	2L_9281592_SNP [dm3] 2L_9281592_SNP [dm6]	G	A	3.289e^-4	0.701	INTRON Ggamma30A
2R	14045700	2R_14045700_SNP [dm3] 2R_18158195_SNP [dm6]	C	G	3.294e^-4	0.701	UPSTREAM CG10914 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
2R	19449776	2R_19449776_SNP [dm3] 2R_23562253_SNP [dm6]	C	T	3.295e^-4	0.701	SYNONYMOUS_CODING Pi3K59F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15749269	3L_15749269_SNP [dm3] 3L_15756169_SNP [dm6]	A	G	3.295e^-4	0.701	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	1870437	3R_1870437_SNP [dm3] 3R_6044715_SNP [dm6]	G	A	3.297e^-4	0.701	INTERGENIC
X	11347189	X_11347189_SNP [dm3] X_11453156_SNP [dm6]	G	C	3.300e^-4	0.701	INTRON Evi5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4546219	2L_4546219_SNP [dm3] 2L_4546219_SNP [dm6]	G	T	3.305e^-4	0.701	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26074268	3R_26074268_SNP [dm3] 3R_30248546_SNP [dm6]	C	T	3.311e^-4	0.701	UPSTREAM tRNA:CR31383 DOWNSTREAM tRNA:CR31023 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	26074270	3R_26074270_SNP [dm3] 3R_30248548_SNP [dm6]	C	G	3.311e^-4	0.701	UPSTREAM tRNA:CR31383 DOWNSTREAM tRNA:CR31023 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	26625657	3R_26625657_SNP [dm3] 3R_30799935_SNP [dm6]	G	A	3.315e^-4	0.701	INTRON wts
3L	10741756	3L_10741756_SNP [dm3] 3L_10748656_SNP [dm6]	G	T	3.316e^-4	0.701	INTERGENIC
2R	18714658	2R_18714658_SNP [dm3] 2R_22827135_SNP [dm6]	A	T	3.318e^-4	0.701	INTRON CG42284 & 1 other
3R	23480872	3R_23480872_SNP [dm3] 3R_27655150_SNP [dm6]	C	T	3.320e^-4	0.701	INTRON tau
3L	11170712	3L_11170712_SNP [dm3] 3L_11177612_SNP [dm6]	C	A	3.328e^-4	0.701	UTR_3_PRIME GlcAT-P DOWNSTREAM CG14142
3R	23936977	3R_23936977_SNP [dm3] 3R_28111255_SNP [dm6]	G	C	3.330e^-4	0.701	INTERGENIC
3L	489701	3L_489701_SNP [dm3] 3L_489701_SNP [dm6]	G	A	3.344e^-4	0.701	INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	1444943	2L_1444943_SNP [dm3] 2L_1444943_SNP [dm6]	C	A	3.344e^-4	0.701	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21157605	3R_21157605_SNP [dm3] 3R_25331883_SNP [dm6]	A	G	3.348e^-4	0.701	SYNONYMOUS_CODING CG10669 UPSTREAM CHKov2	TF binding site mE1_TFBS_cad
X	13322249	X_13322249_SNP [dm3] X_13428216_SNP [dm6]	A	C	3.351e^-4	0.701	INTERGENIC
2L	116679	2L_116679_SNP [dm3] 2L_116679_SNP [dm6]	A	G	3.355e^-4	0.701	UPSTREAM CG13694 DOWNSTREAM CG4822 INTRON CG11455	transposable element FlyBase
3R	12803620	3R_12803620_SNP [dm3] 3R_16977898_SNP [dm6]	T	A	3.360e^-4	0.701	UPSTREAM Actn3 DOWNSTREAM Ahcy89E INTERGENIC
3R	20926682	3R_20926682_SNP [dm3] 3R_25100960_SNP [dm6]	A	T	3.360e^-4	0.701	NON_SYNONYMOUS_CODING CG33095 UTR_3_PRIME CG33096	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15060609	2R_15060609_SNP [dm3] 2R_19173104_SNP [dm6]	T	C	3.360e^-4	0.701	INTRON CG10737
2R	440468	2R_440468_INS [dm3] 2R_4552963_INS [dm6]	G	GG	3.361e^-4	0.701	INTRON Stlk	transposable element FlyBase
3R	15025625	3R_15025625_SNP [dm3] 3R_19199903_SNP [dm6]	T	C	3.363e^-4	0.701	INTRON CG31475
X	3546772	X_3546772_SNP [dm3] X_3652739_SNP [dm6]	T	C	3.365e^-4	0.701	INTRON AstA-R1
X	19301895	X_19301895_SNP [dm3] X_19407862_SNP [dm6]	C	G	3.365e^-4	0.701	INTRON kek5
3L	10958807	3L_10958807_SNP [dm3] 3L_10965707_SNP [dm6]	A	C	3.366e^-4	0.701	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
2R	16097053	2R_16097053_SNP [dm3] 2R_20209548_SNP [dm6]	T	C	3.371e^-4	0.701	INTERGENIC
2R	17408050	2R_17408050_SNP [dm3] 2R_21520545_SNP [dm6]	A	G	3.374e^-4	0.701	UTR_3_PRIME CG30289 UPSTREAM CG30288
3R	10984709	3R_10984709_SNP [dm3] 3R_15158987_SNP [dm6]	G	A	3.384e^-4	0.702	INTRON Gyc88E
3L	1551446	3L_1551446_INS [dm3] 3L_1551446_INS [dm6]	G	GTAG	3.388e^-4	0.702	INTRON Cct1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26124272	3R_26124272_SNP [dm3] 3R_30298550_SNP [dm6]	T	A	3.395e^-4	0.702	INTRON hdc
2R	8133171	2R_8133171_SNP [dm3] 2R_12245666_SNP [dm6]	C	T	3.399e^-4	0.702	UPSTREAM CG43244 INTERGENIC
3L	11923049	3L_11923049_SNP [dm3] 3L_11929949_SNP [dm6]	C	T	3.404e^-4	0.702	INTRON CG44837 & 1 other	TF binding site mE1_TFBS_cad
3R	3614208	3R_3614208_SNP [dm3] 3R_7788486_SNP [dm6]	T	C	3.406e^-4	0.702	SYNONYMOUS_CODING CG18746 UPSTREAM CG18748
3R	17229218	3R_17229218_INS [dm3] 3R_21403496_INS [dm6]	T	TG	3.408e^-4	0.702	UPSTREAM CG7907 INTERGENIC	TF binding site mE1_TFBS_inv
2L	13986056	2L_13986056_SNP [dm3] 2L_13986056_SNP [dm6]	G	A	3.411e^-4	0.702	INTRON rk
3R	26074286	3R_26074286_INS [dm3] 3R_30248564_INS [dm6]	T	TCCCT	3.412e^-4	0.702	UPSTREAM tRNA:CR31383 DOWNSTREAM tRNA:CR31023 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	6268355	X_6268355_SNP [dm3] X_6374322_SNP [dm6]	T	A	3.428e^-4	0.702	INTERGENIC
X	10272533	X_10272533_SNP [dm3] X_10378500_SNP [dm6]	T	G	3.429e^-4	0.702	SYNONYMOUS_CODING CG32681 INTRON CG17841
3L	680852	3L_680852_SNP [dm3] 3L_680852_SNP [dm6]	A	T	3.429e^-4	0.702	UTR_3_PRIME CG3386 UPSTREAM CG17129	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad
X	21141057	X_21141057_SNP [dm3] X_21270030_SNP [dm6]	T	C	3.436e^-4	0.702	INTRON CG32521
3R	15194178	3R_15194178_SNP [dm3] 3R_19368456_SNP [dm6]	A	T	3.440e^-4	0.702	DOWNSTREAM Ino80 INTERGENIC
3R	14659531	3R_14659531_SNP [dm3] 3R_18833809_SNP [dm6]	C	A	3.441e^-4	0.702	INTRON CG18208
3R	23936583	3R_23936583_SNP [dm3] 3R_28110861_SNP [dm6]	T	C	3.441e^-4	0.702	INTERGENIC
2R	10366198	2R_10366198_SNP [dm3] 2R_14478693_SNP [dm6]	C	T	3.442e^-4	0.702	DOWNSTREAM CR44462 INTERGENIC	TF binding site mE1_TFBS_cad
3L	21842999	3L_21842999_SNP [dm3] 3L_21849899_SNP [dm6]	C	A	3.456e^-4	0.704	INTRON mub
X	3615773	X_3615773_SNP [dm3] X_3721740_SNP [dm6]	T	A	3.465e^-4	0.705	INTRON tlk
2R	15017739	2R_15017739_SNP [dm3] 2R_19130234_SNP [dm6]	C	G	3.481e^-4	0.707	UPSTREAM CG15117 INTRON botv	TF binding site mE1_TFBS_cad
3L	17688262	3L_17688262_SNP [dm3] 3L_17695162_SNP [dm6]	T	C	3.482e^-4	0.707	INTRON Ccn
X	9420874	X_9420874_SNP [dm3] X_9526841_SNP [dm6]	T	C	3.489e^-4	0.707	INTRON CG32700
2L	142526	2L_142526_SNP [dm3] 2L_142526_SNP [dm6]	A	T	3.492e^-4	0.707	UTR_5_PRIME CG31974 UPSTREAM CG11454 INTRON CG11455	TF binding site mE1_TFBS_sens
2R	473170	2R_473170_SNP [dm3] 2R_4585665_SNP [dm6]	A	G	3.495e^-4	0.707	INTERGENIC
3L	3591606	3L_3591606_SNP [dm3] 3L_3591606_SNP [dm6]	T	C	3.511e^-4	0.707	INTRON Eip63E
2L	9804438	2L_9804438_SNP [dm3] 2L_9804438_SNP [dm6]	T	A	3.511e^-4	0.707	INTRON nAChRalpha6
2L	14017934	2L_14017934_SNP [dm3] 2L_14017934_SNP [dm6]	A	C	3.512e^-4	0.707	INTRON bgm
3R	6762584	3R_6762584_SNP [dm3] 3R_10936862_SNP [dm6]	T	C	3.520e^-4	0.707	INTERGENIC
3R	26879766	3R_26879766_SNP [dm3] 3R_31054044_SNP [dm6]	T	A	3.529e^-4	0.707	UPSTREAM l_3_03670 DOWNSTREAM dco INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3L	700322	3L_700322_SNP [dm3] 3L_700322_SNP [dm6]	T	G	3.530e^-4	0.707	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_kn mE1_TFBS_zfh1
3R	18446618	3R_18446618_SNP [dm3] 3R_22620896_SNP [dm6]	T	G	3.531e^-4	0.707	INTRON loco	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9881802	3L_9881802_SNP [dm3] 3L_9888702_SNP [dm6]	C	T	3.540e^-4	0.707	UPSTREAM CalpB & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	2404091	3L_2404091_SNP [dm3] 3L_2404091_SNP [dm6]	C	A	3.552e^-4	0.707	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11085325	2L_11085325_SNP [dm3] 2L_11085325_SNP [dm6]	A	T	3.555e^-4	0.707	UPSTREAM AstCC INTERGENIC
3L	701720	3L_701720_SNP [dm3] 3L_701720_SNP [dm6]	A	C	3.556e^-4	0.707	INTERGENIC
3R	25796263	3R_25796263_SNP [dm3] 3R_29970541_SNP [dm6]	C	T	3.557e^-4	0.707	INTERGENIC
3L	10642242	3L_10642242_SNP [dm3] 3L_10649142_SNP [dm6]	T	C	3.558e^-4	0.707	INTRON CG32066
2L	3929748	2L_3929748_SNP [dm3] 2L_3929748_SNP [dm6]	G	T	3.562e^-4	0.707	INTRON fred
2R	473165	2R_473165_SNP [dm3] 2R_4585660_SNP [dm6]	T	G	3.565e^-4	0.707	INTERGENIC
3L	5739023	3L_5739023_SNP [dm3] 3L_5745923_SNP [dm6]	A	T	3.565e^-4	0.707	UTR_3_PRIME sif INTRON sif
2R	13832081	2R_13832081_SNP [dm3] 2R_17944576_SNP [dm6]	C	A	3.567e^-4	0.707	INTERGENIC
3R	14677708	3R_14677708_SNP [dm3] 3R_18851986_SNP [dm6]	G	A	3.570e^-4	0.707	UPSTREAM CR45633 & 1 other INTERGENIC
3R	14677709	3R_14677709_SNP [dm3] 3R_18851987_SNP [dm6]	C	G	3.570e^-4	0.707	UPSTREAM CR45633 & 1 other INTERGENIC
3R	26299449	3R_26299449_SNP [dm3] 3R_30473727_SNP [dm6]	T	C	3.571e^-4	0.707	INTRON PH4alphaEFB
3L	2657716	3L_2657716_SNP [dm3] 3L_2657716_SNP [dm6]	T	C	3.573e^-4	0.707	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_chinmo
2R	5657111	2R_5657111_INS [dm3] 2R_9769606_INS [dm6]	A	AA	3.575e^-4	0.707	INTRON CG1688	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	14459119	2L_14459119_SNP [dm3] 2L_14459119_SNP [dm6]	T	A	3.580e^-4	0.707	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3R	24094863	3R_24094863_SNP [dm3] 3R_28269141_SNP [dm6]	T	C	3.586e^-4	0.707	INTERGENIC
3R	19870635	3R_19870635_SNP [dm3] 3R_24044913_SNP [dm6]	T	C	3.607e^-4	0.707	SYNONYMOUS_CODING Rox8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16749564	2R_16749564_SNP [dm3] 2R_20862059_SNP [dm6]	A	G	3.607e^-4	0.707	INTERGENIC
3L	11803667	3L_11803667_SNP [dm3] 3L_11810567_SNP [dm6]	C	A	3.614e^-4	0.707	INTRON CG42255
2L	10649362	2L_10649362_SNP [dm3] 2L_10649362_SNP [dm6]	G	C	3.614e^-4	0.707	INTRON CG17097
X	20568244	X_20568244_SNP [dm3] X_20697217_SNP [dm6]	C	T	3.626e^-4	0.707	UTR_3_PRIME run DOWNSTREAM run	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	17685255	2L_17685255_SNP [dm3] 2L_17685255_SNP [dm6]	A	G	3.630e^-4	0.707	INTRON CadN
3R	14680913	3R_14680913_SNP [dm3] 3R_18855191_SNP [dm6]	A	T	3.633e^-4	0.707	INTERGENIC
3L	10642237	3L_10642237_SNP [dm3] 3L_10649137_SNP [dm6]	T	A	3.636e^-4	0.707	INTRON CG32066
3L	12411876	3L_12411876_SNP [dm3] 3L_12418776_SNP [dm6]	A	G	3.637e^-4	0.707	INTERGENIC	TF binding site mE1_TFBS_cnc
2R	14529135	2R_14529135_SNP [dm3] 2R_18641630_SNP [dm6]	C	T	3.638e^-4	0.707	SPLICE_SITE_REGION SP2637 DOWNSTREAM CheA56a INTRON SP2637	TF binding site mE1_TFBS_cad
2R	15400612	2R_15400612_SNP [dm3] 2R_19513107_SNP [dm6]	C	T	3.642e^-4	0.707	SYNONYMOUS_CODING Ir56d	TF binding site mE1_TFBS_sens
2L	13178139	2L_13178139_SNP [dm3] 2L_13178139_SNP [dm6]	T	A	3.644e^-4	0.707	NON_SYNONYMOUS_CODING CG5439	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8345110	2L_8345110_SNP [dm3] 2L_8345110_SNP [dm6]	A	G	3.650e^-4	0.707	UPSTREAM CR45371 DOWNSTREAM CG14273 INTERGENIC	TF binding site mE1_TFBS_HSA
X	10488697	X_10488697_SNP [dm3] X_10594664_SNP [dm6]	T	C	3.655e^-4	0.707	NON_SYNONYMOUS_CODING Hmr	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14677730	3R_14677730_SNP [dm3] 3R_18852008_SNP [dm6]	G	A	3.656e^-4	0.707	UPSTREAM CR45633 & 1 other INTERGENIC
3L	2659302	3L_2659302_SNP [dm3] 3L_2659302_SNP [dm6]	T	G	3.658e^-4	0.707	UPSTREAM CG33233 INTRON Fife	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9896979	3L_9896979_SNP [dm3] 3L_9903879_SNP [dm6]	A	C	3.661e^-4	0.707	DOWNSTREAM nudE INTERGENIC
2L	9946962	2L_9946962_SNP [dm3] 2L_9946962_SNP [dm6]	A	C	3.662e^-4	0.707	INTRON CG5853
X	21849726	X_21849726_SNP [dm3] X_22447890_SNP [dm6]	C	G	3.663e^-4	0.707	UTR_3_PRIME CG14615 DOWNSTREAM CG14621
2R	473181	2R_473181_SNP [dm3] 2R_4585676_SNP [dm6]	A	C	3.664e^-4	0.707	INTERGENIC
3R	23936673	3R_23936673_SNP [dm3] 3R_28110951_SNP [dm6]	G	T	3.666e^-4	0.707	INTERGENIC
2L	3930650	2L_3930650_SNP [dm3] 2L_3930650_SNP [dm6]	G	T	3.670e^-4	0.707	INTRON fred
3R	26074271	3R_26074271_SNP [dm3] 3R_30248549_SNP [dm6]	T	A	3.676e^-4	0.708	UPSTREAM tRNA:CR31383 DOWNSTREAM tRNA:CR31023 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	2009665	X_2009665_INS [dm3] X_2115632_INS [dm6]	T	TTACT	3.684e^-4	0.708	UTR_3_PRIME csw DOWNSTREAM ph-d
2R	9926013	2R_9926013_DEL [dm3] 2R_14038508_DEL [dm6]	AAGAGCAACATAATA...	A	3.688e^-4	0.708	INTRON mam
X	14379696	X_14379696_SNP [dm3] X_14485663_SNP [dm6]	C	T	3.691e^-4	0.708	INTERGENIC
2L	20139066	2L_20139066_SNP [dm3] 2L_20139066_SNP [dm6]	G	A	3.694e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3574592	2R_3574592_SNP [dm3] 2R_7687087_SNP [dm6]	C	T	3.703e^-4	0.708	INTRON CG1399	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	2009700	X_2009700_SNP [dm3] X_2115667_SNP [dm6]	C	T	3.706e^-4	0.708	UTR_3_PRIME csw DOWNSTREAM ph-d
2R	9910020	2R_9910020_SNP [dm3] 2R_14022515_SNP [dm6]	G	A	3.708e^-4	0.708	INTRON mam
2R	7056289	2R_7056289_SNP [dm3] 2R_11168784_SNP [dm6]	T	C	3.710e^-4	0.708	INTRON shn & 1 other
2R	9271513	2R_9271513_SNP [dm3] 2R_13384008_SNP [dm6]	T	G	3.711e^-4	0.708	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	9935356	2R_9935356_DEL [dm3] 2R_14047851_DEL [dm6]	AT	A	3.713e^-4	0.708	INTRON mam
2L	19642591	2L_19642591_SNP [dm3] 2L_19642591_SNP [dm6]	A	T	3.720e^-4	0.708	INTRON Lar EXON CR44979
2R	8779541	2R_8779541_SNP [dm3] 2R_12892036_SNP [dm6]	T	A	3.724e^-4	0.708	INTRON vg	TF binding site mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3R	10984693	3R_10984693_SNP [dm3] 3R_15158971_SNP [dm6]	G	A	3.732e^-4	0.708	INTRON Gyc88E
2L	14236439	2L_14236439_SNP [dm3] 2L_14236439_SNP [dm6]	G	T	3.734e^-4	0.708	DOWNSTREAM CR44728 INTERGENIC
3L	1031173	3L_1031173_SNP [dm3] 3L_1031173_SNP [dm6]	C	T	3.739e^-4	0.708	INTRON trio
3L	683279	3L_683279_SNP [dm3] 3L_683279_SNP [dm6]	C	G	3.741e^-4	0.708	NON_SYNONYMOUS_CODING ebd1 UPSTREAM CG3386	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	17986116	2L_17986116_SNP [dm3] 2L_17986116_SNP [dm6]	G	A	3.744e^-4	0.708	UPSTREAM CG5681 INTERGENIC
2L	3182154	2L_3182154_SNP [dm3] 2L_3182154_SNP [dm6]	G	T	3.767e^-4	0.712	INTRON CG34393
2L	18025370	2L_18025370_DEL [dm3] 2L_18025370_DEL [dm6]	AA	A	3.772e^-4	0.712	INTRON rdo
3R	20421472	3R_20421472_SNP [dm3] 3R_24595750_SNP [dm6]	G	A	3.788e^-4	0.714	INTRON mld	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7146983	2L_7146983_SNP [dm3] 2L_7146983_SNP [dm6]	G	A	3.791e^-4	0.714	INTRON Pvf3
2L	292156	2L_292156_SNP [dm3] 2L_292156_SNP [dm6]	C	T	3.791e^-4	0.714	UPSTREAM CG11562 & 1 other DOWNSTREAM U2af38 INTERGENIC
X	13878118	X_13878118_SNP [dm3] X_13984085_SNP [dm6]	C	G	3.799e^-4	0.715	INTRON mamo
3R	21238207	3R_21238207_SNP [dm3] 3R_25412485_SNP [dm6]	A	G	3.824e^-4	0.717	INTRON Fur1
2L	8770486	2L_8770486_SNP [dm3] 2L_8770486_SNP [dm6]	G	A	3.825e^-4	0.717	SYNONYMOUS_CODING CG9465	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15752296	2R_15752296_SNP [dm3] 2R_19864791_SNP [dm6]	A	G	3.826e^-4	0.717	UTR_5_PRIME Obp56i

By genomic position
Variant impact
Gene name

Total_Number_bp phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results