DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.193e^-13)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.08048

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2404 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	10247834	2R_10247834_SNP [dm3] 2R_14360329_SNP [dm6]	C	T	4.730e^-7	0.627	UPSTREAM Arc1 DOWNSTREAM CR10102 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	8587679	2L_8587679_SNP [dm3] 2L_8587679_SNP [dm6]	A	G	1.576e^-6	0.627	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	14676984	3R_14676984_SNP [dm3] 3R_18851262_SNP [dm6]	C	T	3.417e^-6	0.627	UPSTREAM CR45633 DOWNSTREAM CG31226 INTERGENIC
2L	5403099	2L_5403099_SNP [dm3] 2L_5403099_SNP [dm6]	A	T	4.137e^-6	0.627	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	5403108	2L_5403108_SNP [dm3] 2L_5403108_SNP [dm6]	C	A	4.137e^-6	0.627	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	14676991	3R_14676991_DEL [dm3] 3R_18851269_DEL [dm6]	CG	T	4.170e^-6	0.627	UPSTREAM CR45633 DOWNSTREAM CG31226 INTERGENIC
2L	17544944	2L_17544944_SNP [dm3] 2L_17544944_SNP [dm6]	A	T	5.075e^-6	0.627	INTERGENIC
2L	5443162	2L_5443162_SNP [dm3] 2L_5443162_SNP [dm6]	G	T	5.356e^-6	0.627	INTERGENIC
X	16089019	X_16089019_SNP [dm3] X_16194986_SNP [dm6]	A	C	5.565e^-6	0.627	INTERGENIC
2L	8587683	2L_8587683_DEL [dm3] 2L_8587683_DEL [dm6]	TATATATAT	T	5.629e^-6	0.627	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	25825531	3R_25825531_INS [dm3] 3R_29999809_INS [dm6]	G	GG	5.757e^-6	0.627	UTR_5_PRIME CG34298 UPSTREAM Tace DOWNSTREAM CG11504	TF binding site mE1_TFBS_cad
2L	5443163	2L_5443163_SNP [dm3] 2L_5443163_SNP [dm6]	A	T	5.953e^-6	0.627	INTERGENIC
3R	25825836	3R_25825836_SNP [dm3] 3R_30000114_SNP [dm6]	T	C	6.227e^-6	0.627	SYNONYMOUS_CODING CG34298 UPSTREAM Tace DOWNSTREAM CG11504	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	25315605	3R_25315605_SNP [dm3] 3R_29489883_SNP [dm6]	A	G	6.510e^-6	0.627	SYNONYMOUS_CODING CG2006 UPSTREAM CG2321 DOWNSTREAM Spase12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8587695	2L_8587695_SNP [dm3] 2L_8587695_SNP [dm6]	A	G	6.631e^-6	0.627	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	14420035	2R_14420035_SNP [dm3] 2R_18532530_SNP [dm6]	C	G	7.624e^-6	0.627	INTRON CG10924	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18393503	3R_18393503_SNP [dm3] 3R_22567781_SNP [dm6]	T	A	7.878e^-6	0.627	INTERGENIC
2L	4546212	2L_4546212_SNP [dm3] 2L_4546212_SNP [dm6]	G	C	8.070e^-6	0.627	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5403133	2L_5403133_SNP [dm3] 2L_5403133_SNP [dm6]	A	G	8.305e^-6	0.627	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	18393481	3R_18393481_DEL [dm3] 3R_22567759_DEL [dm6]	ATCGTAGATC	A	8.556e^-6	0.627	INTERGENIC
3L	14145464	3L_14145464_SNP [dm3] 3L_14152364_SNP [dm6]	A	C	8.742e^-6	0.627	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	4811238	2L_4811238_SNP [dm3] 2L_4811238_SNP [dm6]	T	C	9.003e^-6	0.627	DOWNSTREAM CR45297 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	309609	2L_309609_SNP [dm3] 2L_309609_SNP [dm6]	A	G	9.036e^-6	0.627	UPSTREAM Plc21C & 1 other INTRON Plc21C	TF binding site BDTNP1_TFBS_dl
3R	25182085	3R_25182085_SNP [dm3] 3R_29356363_SNP [dm6]	G	A	9.224e^-6	0.627	EXON CR45547
3R	18393492	3R_18393492_SNP [dm3] 3R_22567770_SNP [dm6]	C	A	9.311e^-6	0.627	INTERGENIC
3R	25825882	3R_25825882_SNP [dm3] 3R_30000160_SNP [dm6]	T	G	9.586e^-6	0.627	UPSTREAM Tace DOWNSTREAM CG11504 INTRON CG34298	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	7496902	3L_7496902_SNP [dm3] 3L_7503802_SNP [dm6]	A	C	1.013e^-5	0.627	INTERGENIC
2R	20125868	2R_20125868_SNP [dm3] 2R_24238345_SNP [dm6]	A	G	1.046e^-5	0.627	EXON CR44827
3R	18393497	3R_18393497_SNP [dm3] 3R_22567775_SNP [dm6]	T	C	1.065e^-5	0.627	INTERGENIC
2L	8587693	2L_8587693_SNP [dm3] 2L_8587693_SNP [dm6]	T	A	1.091e^-5	0.627	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	22276027	3R_22276027_SNP [dm3] 3R_26450305_SNP [dm6]	T	G	1.096e^-5	0.627	SYNONYMOUS_CODING Hex-t1 UPSTREAM Hex-t2
3R	18393493	3R_18393493_SNP [dm3] 3R_22567771_SNP [dm6]	A	T	1.127e^-5	0.627	INTERGENIC
3R	18393496	3R_18393496_SNP [dm3] 3R_22567774_SNP [dm6]	T	G	1.127e^-5	0.627	INTERGENIC
3L	16164647	3L_16164647_SNP [dm3] 3L_16171547_SNP [dm6]	A	T	1.143e^-5	0.627	UPSTREAM CG33795 INTERGENIC
2L	5443159	2L_5443159_SNP [dm3] 2L_5443159_SNP [dm6]	A	T	1.170e^-5	0.627	INTERGENIC
3R	25825945	3R_25825945_SNP [dm3] 3R_30000223_SNP [dm6]	G	A	1.233e^-5	0.631	SYNONYMOUS_CODING CG34298 UPSTREAM Tace DOWNSTREAM CG11504	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	4811217	2L_4811217_SNP [dm3] 2L_4811217_SNP [dm6]	G	A	1.309e^-5	0.631	DOWNSTREAM CR45297 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	8587666	2L_8587666_DEL [dm3] 2L_8587666_DEL [dm6]	TCTTAT	T	1.309e^-5	0.631	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	8587700	2L_8587700_SNP [dm3] 2L_8587700_SNP [dm6]	C	A	1.320e^-5	0.631	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	18393504	3R_18393504_DEL [dm3] 3R_22567782_DEL [dm6]	CC	C	1.345e^-5	0.631	INTERGENIC
2R	10249688	2R_10249688_SNP [dm3] 2R_14362183_SNP [dm6]	G	C	1.446e^-5	0.641	SYNONYMOUS_CODING Arc2 UPSTREAM CR10102 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	18393516	3R_18393516_SNP [dm3] 3R_22567794_SNP [dm6]	A	T	1.454e^-5	0.641	INTERGENIC
2L	4811089	2L_4811089_SNP [dm3] 2L_4811089_SNP [dm6]	T	A	1.486e^-5	0.641	DOWNSTREAM CR45297 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	17545002	2L_17545002_SNP [dm3] 2L_17545002_SNP [dm6]	T	C	1.571e^-5	0.641	INTERGENIC
3L	4337119	3L_4337119_SNP [dm3] 3L_4337119_SNP [dm6]	C	T	1.580e^-5	0.641	INTRON Cip4
2L	17498349	2L_17498349_SNP [dm3] 2L_17498349_SNP [dm6]	A	G	1.605e^-5	0.641	DOWNSTREAM CR45715 & 1 other INTRON CG15142	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	7496901	3L_7496901_SNP [dm3] 3L_7503801_SNP [dm6]	T	A	1.632e^-5	0.641	INTERGENIC
3R	14971945	3R_14971945_SNP [dm3] 3R_19146223_SNP [dm6]	C	A	1.642e^-5	0.641	INTRON Ppcs
3L	12116025	3L_12116025_SNP [dm3] 3L_12122925_SNP [dm6]	T	G	1.759e^-5	0.651	SYNONYMOUS_CODING yps	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_slp1 mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9345445	2R_9345445_SNP [dm3] 2R_13457940_SNP [dm6]	G	A	1.820e^-5	0.651	SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17498345	2L_17498345_SNP [dm3] 2L_17498345_SNP [dm6]	T	C	1.898e^-5	0.651	DOWNSTREAM CR45715 & 1 other INTRON CG15142	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	8516159	2R_8516159_SNP [dm3] 2R_12628654_SNP [dm6]	T	C	1.962e^-5	0.651	DOWNSTREAM muskelin & 1 other INTERGENIC
2L	14958061	2L_14958061_SNP [dm3] 2L_14958061_SNP [dm6]	T	C	1.970e^-5	0.651	INTRON CG42313
X	19176741	X_19176741_SNP [dm3] X_19282708_SNP [dm6]	C	T	1.989e^-5	0.651	UTR_3_PRIME CG8034	TF binding site mE1_TFBS_cad
2L	5443060	2L_5443060_SNP [dm3] 2L_5443060_SNP [dm6]	A	C	2.010e^-5	0.651	INTERGENIC
2L	4811136	2L_4811136_SNP [dm3] 2L_4811136_SNP [dm6]	C	A	2.012e^-5	0.651	DOWNSTREAM CR45297 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
X	9735227	X_9735227_SNP [dm3] X_9841194_SNP [dm6]	C	G	2.014e^-5	0.651	INTRON CG32698
X	4590321	X_4590321_SNP [dm3] X_4696288_SNP [dm6]	G	T	2.093e^-5	0.651	INTRON ctp
2R	10247926	2R_10247926_SNP [dm3] 2R_14360421_SNP [dm6]	G	A	2.110e^-5	0.651	UPSTREAM Arc1 DOWNSTREAM CR10102 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	3576742	3L_3576742_SNP [dm3] 3L_3576742_SNP [dm6]	C	T	2.118e^-5	0.651	INTRON Eip63E
3L	8254916	3L_8254916_SNP [dm3] 3L_8261816_SNP [dm6]	T	C	2.161e^-5	0.651	INTRON Dscam4
2L	8587701	2L_8587701_SNP [dm3] 2L_8587701_SNP [dm6]	T	A	2.243e^-5	0.651	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	20430337	X_20430337_SNP [dm3] X_20559310_SNP [dm6]	G	C	2.250e^-5	0.651	INTRON RunxB
X	16212839	X_16212839_SNP [dm3] X_16318806_SNP [dm6]	A	G	2.252e^-5	0.651	INTRON Cyp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11769465	2R_11769465_SNP [dm3] 2R_15881960_SNP [dm6]	C	T	2.267e^-5	0.651	INTRON sli
3R	25991376	3R_25991376_SNP [dm3] 3R_30165654_SNP [dm6]	A	G	2.327e^-5	0.651	SYNONYMOUS_CODING CG31030 DOWNSTREAM CG31028	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	4811120	2L_4811120_SNP [dm3] 2L_4811120_SNP [dm6]	A	C	2.401e^-5	0.651	DOWNSTREAM CR45297 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
X	8274947	X_8274947_SNP [dm3] X_8380914_SNP [dm6]	T	C	2.404e^-5	0.651	INTERGENIC
3R	18393499	3R_18393499_SNP [dm3] 3R_22567777_SNP [dm6]	A	C	2.412e^-5	0.651	INTERGENIC
2L	12977807	2L_12977807_SNP [dm3] 2L_12977807_SNP [dm6]	C	T	2.431e^-5	0.651	SYNONYMOUS_CODING Vha68-2 UPSTREAM Vha68-3	TF binding site mE1_TFBS_HSA
3L	17574144	3L_17574144_SNP [dm3] 3L_17581044_SNP [dm6]	A	T	2.500e^-5	0.66	INTRON Eip74EF
2R	14972415	2R_14972415_SNP [dm3] 2R_19084910_SNP [dm6]	T	A	2.663e^-5	0.694	INTRON 5-HT1A	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	6124327	X_6124327_SNP [dm3] X_6230294_SNP [dm6]	C	T	2.841e^-5	0.718	SYNONYMOUS_CODING CG14446
2L	15382345	2L_15382345_SNP [dm3] 2L_15382345_SNP [dm6]	G	T	2.858e^-5	0.718	INTERGENIC
3R	16004039	3R_16004039_DEL [dm3] 3R_20178317_DEL [dm6]	CC	C	2.891e^-5	0.718	INTERGENIC
2L	4811131	2L_4811131_SNP [dm3] 2L_4811131_SNP [dm6]	G	C	2.908e^-5	0.718	DOWNSTREAM CR45297 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	14972036	3R_14972036_SNP [dm3] 3R_19146314_SNP [dm6]	G	A	2.967e^-5	0.723	INTRON Ppcs
X	16083165	X_16083165_SNP [dm3] X_16189132_SNP [dm6]	C	T	3.053e^-5	0.729	INTERGENIC
3L	13687066	3L_13687066_SNP [dm3] 3L_13693966_SNP [dm6]	A	G	3.070e^-5	0.729	INTRON bru-3
3R	13781149	3R_13781149_SNP [dm3] 3R_17955427_SNP [dm6]	A	C	3.257e^-5	0.746	INTRON cpo
2L	6974154	2L_6974154_SNP [dm3] 2L_6974154_SNP [dm6]	G	A	3.270e^-5	0.746	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18393439	3R_18393439_SNP [dm3] 3R_22567717_SNP [dm6]	T	A	3.278e^-5	0.746	INTERGENIC
3R	24835273	3R_24835273_SNP [dm3] 3R_29009551_SNP [dm6]	C	A	3.487e^-5	0.746	UPSTREAM mir-4947 INTRON wat
3L	11272410	3L_11272410_SNP [dm3] 3L_11279310_SNP [dm6]	T	C	3.495e^-5	0.746	INTERGENIC
3L	16041690	3L_16041690_SNP [dm3] 3L_16048590_SNP [dm6]	T	C	3.574e^-5	0.746	UPSTREAM CR43951 INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	2647275	3L_2647275_SNP [dm3] 3L_2647275_SNP [dm6]	G	A	3.685e^-5	0.746	UPSTREAM CG1246 DOWNSTREAM CG1143 INTERGENIC
3R	23323189	3R_23323189_SNP [dm3] 3R_27497467_SNP [dm6]	A	C	3.743e^-5	0.746	INTERGENIC
2L	15141838	2L_15141838_SNP [dm3] 2L_15141838_SNP [dm6]	G	C	3.750e^-5	0.746	INTERGENIC
3R	9382844	3R_9382844_SNP [dm3] 3R_13557122_SNP [dm6]	C	T	3.799e^-5	0.746	INTERGENIC
2L	13986032	2L_13986032_SNP [dm3] 2L_13986032_SNP [dm6]	A	T	3.812e^-5	0.746	INTRON rk
2R	9870883	2R_9870883_SNP [dm3] 2R_13983378_SNP [dm6]	C	T	3.822e^-5	0.746	UPSTREAM CG8067 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3R	14543660	3R_14543660_SNP [dm3] 3R_18717938_SNP [dm6]	A	G	3.870e^-5	0.746	UTR_3_PRIME VAChT INTRON Cha
2L	17498324	2L_17498324_SNP [dm3] 2L_17498324_SNP [dm6]	A	G	3.893e^-5	0.746	DOWNSTREAM CR45715 & 1 other INTRON CG15142	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	13046572	2L_13046572_SNP [dm3] 2L_13046572_SNP [dm6]	A	T	3.918e^-5	0.746	INTRON CG9932
X	3546772	X_3546772_SNP [dm3] X_3652739_SNP [dm6]	T	C	3.958e^-5	0.746	INTRON AstA-R1
3L	3754682	3L_3754682_SNP [dm3] 3L_3754682_SNP [dm6]	C	A	3.971e^-5	0.746	NON_SYNONYMOUS_CODING ppk27 INTRON CG32264
3L	14094928	3L_14094928_SNP [dm3] 3L_14101828_SNP [dm6]	G	T	4.089e^-5	0.746	INTERGENIC
2L	18113250	2L_18113250_SNP [dm3] 2L_18113250_SNP [dm6]	A	G	4.132e^-5	0.746	UPSTREAM CG44476 INTERGENIC
2L	3152955	2L_3152955_SNP [dm3] 2L_3152955_SNP [dm6]	A	T	4.156e^-5	0.746	UPSTREAM Mad INTRON Mad	TF binding site BDTNP1_TFBS_dl
4	1027788	4_1027788_DEL [dm3] 4_1007162_DEL [dm6]	TTTT	T	4.246e^-5	0.746	UTR_3_PRIME toy DOWNSTREAM toy	TF binding site mE1_TFBS_HSA
3R	20315940	3R_20315940_SNP [dm3] 3R_24490218_SNP [dm6]	G	C	4.395e^-5	0.746	INTRON nAChRalpha2
X	3332226	X_3332226_SNP [dm3] X_3438193_SNP [dm6]	T	A	4.577e^-5	0.746	INTRON CR44999 & 1 other
3L	22169377	3L_22169377_SNP [dm3] 3L_22176277_SNP [dm6]	A	C	4.631e^-5	0.746	INTRON olf413	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_Ubx
X	6455732	X_6455732_SNP [dm3] X_6561699_SNP [dm6]	A	G	4.881e^-5	0.746	SYNONYMOUS_CODING CG34417	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17117421	2L_17117421_SNP [dm3] 2L_17117421_SNP [dm6]	C	A	4.888e^-5	0.746	INTERGENIC
3R	25342166	3R_25342166_SNP [dm3] 3R_29516444_SNP [dm6]	A	C	4.992e^-5	0.746	SYNONYMOUS_CODING CG2014	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13046573	2L_13046573_SNP [dm3] 2L_13046573_SNP [dm6]	A	T	5.041e^-5	0.746	INTRON CG9932
3R	15669921	3R_15669921_SNP [dm3] 3R_19844199_SNP [dm6]	T	G	5.043e^-5	0.746	INTERGENIC
2R	16553733	2R_16553733_SNP [dm3] 2R_20666228_SNP [dm6]	T	C	5.068e^-5	0.746	UPSTREAM Fem-1 INTRON Fem-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	3339802	2R_3339802_INS [dm3] 2R_7452297_INS [dm6]	T	TTTTT	5.140e^-5	0.746	UPSTREAM fa2h EXON CR45320	TF binding site mE1_TFBS_cad
4	1144572	4_1144572_SNP [dm3] 4_1123946_SNP [dm6]	T	C	5.170e^-5	0.746	UPSTREAM Cals & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
X	7245144	X_7245144_SNP [dm3] X_7351111_SNP [dm6]	G	A	5.235e^-5	0.746	INTRON CR44357 & 1 other
X	6455339	X_6455339_SNP [dm3] X_6561306_SNP [dm6]	G	T	5.243e^-5	0.746	SYNONYMOUS_CODING CG34417
2L	4702727	2L_4702727_SNP [dm3] 2L_4702727_SNP [dm6]	C	T	5.288e^-5	0.746	INTRON CG34351
3R	25731170	3R_25731170_SNP [dm3] 3R_29905448_SNP [dm6]	T	G	5.390e^-5	0.746	UPSTREAM CG15515 INTERGENIC
2R	8488811	2R_8488811_SNP [dm3] 2R_12601306_SNP [dm6]	G	A	5.483e^-5	0.746	INTRON Amph
X	10734515	X_10734515_SNP [dm3] X_10840482_SNP [dm6]	T	G	5.508e^-5	0.746	DOWNSTREAM CG15210 INTRON sbr	TF binding site BDTNP1_TFBS_twi
2R	8913557	2R_8913557_SNP [dm3] 2R_13026052_SNP [dm6]	T	C	5.539e^-5	0.746	INTERGENIC
X	11667828	X_11667828_SNP [dm3] X_11773795_SNP [dm6]	T	A	5.577e^-5	0.746	INTRON dy
2R	2481399	2R_2481399_SNP [dm3] 2R_6593894_SNP [dm6]	G	A	5.603e^-5	0.746	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	11175474	3L_11175474_SNP [dm3] 3L_11182374_SNP [dm6]	C	T	5.627e^-5	0.746	SYNONYMOUS_CODING GlcAT-P INTRON GlcAT-P
4	1208581	4_1208581_SNP [dm3] 4_1187955_SNP [dm6]	A	T	5.630e^-5	0.746	INTRON CG33521
3R	14678660	3R_14678660_SNP [dm3] 3R_18852938_SNP [dm6]	A	T	5.685e^-5	0.746	INTERGENIC
3R	14677020	3R_14677020_SNP [dm3] 3R_18851298_SNP [dm6]	T	C	5.702e^-5	0.746	UPSTREAM CR45633 DOWNSTREAM CG31226 INTERGENIC
2R	11769494	2R_11769494_SNP [dm3] 2R_15881989_SNP [dm6]	C	A	5.761e^-5	0.746	INTRON sli
3L	2440462	3L_2440462_SNP [dm3] 3L_2440462_SNP [dm6]	T	G	5.829e^-5	0.746	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	11297454	2L_11297454_SNP [dm3] 2L_11297454_SNP [dm6]	G	A	5.900e^-5	0.746	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
X	16046422	X_16046422_SNP [dm3] X_16152389_SNP [dm6]	G	C	6.019e^-5	0.746	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	4534022	2L_4534022_SNP [dm3] 2L_4534022_SNP [dm6]	C	A	6.022e^-5	0.746	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_sens
2L	18014518	2L_18014518_DEL [dm3] 2L_18014518_DEL [dm6]	AA	A	6.033e^-5	0.746	INTRON rdo	regulatory region REDfly_CRMs
4	866120	4_866120_SNP [dm3] 4_845494_SNP [dm6]	C	G	6.092e^-5	0.746	UPSTREAM fd102C INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
2L	14958055	2L_14958055_SNP [dm3] 2L_14958055_SNP [dm6]	T	A	6.202e^-5	0.746	INTRON CG42313
2R	11769509	2R_11769509_SNP [dm3] 2R_15882004_SNP [dm6]	A	G	6.263e^-5	0.746	INTRON sli
3L	16450014	3L_16450014_SNP [dm3] 3L_16456914_SNP [dm6]	T	G	6.301e^-5	0.746	INTRON CG33158
2L	4517324	2L_4517324_SNP [dm3] 2L_4517324_SNP [dm6]	A	G	6.320e^-5	0.746	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	23259489	3R_23259489_SNP [dm3] 3R_27433767_SNP [dm6]	C	A	6.333e^-5	0.746	INTRON side
2L	6128262	2L_6128262_SNP [dm3] 2L_6128262_SNP [dm6]	T	A	6.343e^-5	0.746	SYNONYMOUS_CODING tectonic UTR_3_PRIME CG42730 UPSTREAM WDR79	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18031683	2L_18031683_SNP [dm3] 2L_18031683_SNP [dm6]	A	C	6.349e^-5	0.746	INTRON rdo
3L	16274820	3L_16274820_SNP [dm3] 3L_16281720_SNP [dm6]	C	T	6.350e^-5	0.746	SYNONYMOUS_CODING CG13049 DOWNSTREAM CG13064	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16162665	3L_16162665_SNP [dm3] 3L_16169565_SNP [dm6]	G	T	6.357e^-5	0.746	SYNONYMOUS_CODING CG33796
2L	17550788	2L_17550788_SNP [dm3] 2L_17550788_SNP [dm6]	A	T	6.410e^-5	0.746	INTERGENIC
2L	16657093	2L_16657093_SNP [dm3] 2L_16657093_SNP [dm6]	T	C	6.446e^-5	0.746	UPSTREAM CG42389 INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
4	949299	4_949299_SNP [dm3] 4_928673_SNP [dm6]	T	A	6.483e^-5	0.746	INTRON eIF4G
2L	17958794	2L_17958794_SNP [dm3] 2L_17958794_SNP [dm6]	A	T	6.563e^-5	0.746	INTERGENIC
2L	17640158	2L_17640158_SNP [dm3] 2L_17640158_SNP [dm6]	G	A	6.609e^-5	0.746	INTERGENIC
2L	12301410	2L_12301410_SNP [dm3] 2L_12301410_SNP [dm6]	A	T	6.675e^-5	0.746	INTRON aret
2L	13429610	2L_13429610_SNP [dm3] 2L_13429610_SNP [dm6]	C	G	6.676e^-5	0.746	INTRON CG42784	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	20125869	2R_20125869_SNP [dm3] 2R_24238346_SNP [dm6]	G	T	6.700e^-5	0.746	EXON CR44827
3L	8568624	3L_8568624_SNP [dm3] 3L_8575524_SNP [dm6]	C	T	6.755e^-5	0.746	INTRON CG6638	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	4942466	2R_4942466_SNP [dm3] 2R_9054961_SNP [dm6]	A	C	6.833e^-5	0.746	INTRON CG13743
2L	14307961	2L_14307961_SNP [dm3] 2L_14307961_SNP [dm6]	A	G	6.951e^-5	0.746	START_GAINED wb UTR_5_PRIME wb INTRON wb
3L	8322064	3L_8322064_SNP [dm3] 3L_8328964_SNP [dm6]	A	G	7.074e^-5	0.746	DOWNSTREAM CG34461 INTRON CG34462	TF binding site mE1_TFBS_ttk
2L	13046561	2L_13046561_INS [dm3] 2L_13046561_INS [dm6]	A	AA	7.076e^-5	0.746	INTRON CG9932
3R	10590302	3R_10590302_SNP [dm3] 3R_14764580_SNP [dm6]	G	T	7.109e^-5	0.746	INTRON jvl
2L	4530745	2L_4530745_SNP [dm3] 2L_4530745_SNP [dm6]	A	T	7.149e^-5	0.746	INTRON dp
3L	10606804	3L_10606804_SNP [dm3] 3L_10613704_SNP [dm6]	T	A	7.192e^-5	0.746	INTERGENIC
3L	5461333	3L_5461333_SNP [dm3] 3L_5468233_SNP [dm6]	T	C	7.215e^-5	0.746	INTERGENIC
2R	9345292	2R_9345292_SNP [dm3] 2R_13457787_SNP [dm6]	A	G	7.235e^-5	0.746	SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	18414761	2L_18414761_SNP [dm3] 2L_18414761_SNP [dm6]	T	A	7.270e^-5	0.746	INTERGENIC
2L	17840567	2L_17840567_SNP [dm3] 2L_17840567_SNP [dm6]	A	G	7.282e^-5	0.746	INTRON CadN2
2R	12378960	2R_12378960_SNP [dm3] 2R_16491455_SNP [dm6]	C	T	7.305e^-5	0.746	INTRON S-Lap8	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	12328958	2L_12328958_SNP [dm3] 2L_12328958_SNP [dm6]	G	A	7.323e^-5	0.746	INTERGENIC
3R	23313743	3R_23313743_SNP [dm3] 3R_27488021_SNP [dm6]	C	G	7.376e^-5	0.746	UTR_5_PRIME Gr98a
2L	10383856	2L_10383856_SNP [dm3] 2L_10383856_SNP [dm6]	A	C	7.397e^-5	0.746	DOWNSTREAM gny & 1 other INTRON CG5096
4	902239	4_902239_INS [dm3] 4_881613_INS [dm6]	A	AGTAGTTAGT	7.437e^-5	0.746	INTRON unc-13 EXON CR44029
3R	20449914	3R_20449914_SNP [dm3] 3R_24624192_SNP [dm6]	G	T	7.445e^-5	0.746	DOWNSTREAM mld INTRON Syx18
X	20431701	X_20431701_SNP [dm3] X_20560674_SNP [dm6]	A	C	7.459e^-5	0.746	INTRON RunxB
2L	6973944	2L_6973944_SNP [dm3] 2L_6973944_SNP [dm6]	C	T	7.497e^-5	0.746	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	16657332	2L_16657332_SNP [dm3] 2L_16657332_SNP [dm6]	A	T	7.498e^-5	0.746	START_GAINED CG42389 UTR_5_PRIME CG42389 INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
2R	15597132	2R_15597132_SNP [dm3] 2R_19709627_SNP [dm6]	T	C	7.711e^-5	0.746	INTERGENIC	regulatory region REDfly_CRMs
3L	10679563	3L_10679563_SNP [dm3] 3L_10686463_SNP [dm6]	C	A	7.721e^-5	0.746	INTRON simj
2L	18443858	2L_18443858_SNP [dm3] 2L_18443858_SNP [dm6]	T	G	7.739e^-5	0.746	UPSTREAM RpS26 DOWNSTREAM ncm INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	23992187	3R_23992187_SNP [dm3] 3R_28166465_SNP [dm6]	A	G	7.807e^-5	0.746	INTRON CG34354
X	21324527	X_21324527_SNP [dm3] X_21453500_SNP [dm6]	T	C	7.814e^-5	0.746	INTRON CG42343
X	16046425	X_16046425_SNP [dm3] X_16152392_SNP [dm6]	T	A	7.841e^-5	0.746	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
4	832637	4_832637_SNP [dm3] 4_812011_SNP [dm6]	G	T	7.853e^-5	0.746	INTRON Sox102F
2L	11982032	2L_11982032_SNP [dm3] 2L_11982032_SNP [dm6]	A	T	7.861e^-5	0.746	SYNONYMOUS_CODING CG16965
X	16212950	X_16212950_INS [dm3] X_16318917_INS [dm6]	A	AA	7.937e^-5	0.746	INTRON Cyp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
X	7213933	X_7213933_SNP [dm3] X_7319900_SNP [dm6]	A	G	8.013e^-5	0.746	INTRON CR44357 & 2 others	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5241351	2L_5241351_SNP [dm3] 2L_5241351_SNP [dm6]	T	C	8.023e^-5	0.746	UPSTREAM tRNA:CR31914 DOWNSTREAM tRNA:CR31971 INTRON tkv
3L	8250775	3L_8250775_SNP [dm3] 3L_8257675_SNP [dm6]	G	A	8.085e^-5	0.746	INTRON Dscam4
X	5073522	X_5073522_SNP [dm3] X_5179489_SNP [dm6]	G	A	8.129e^-5	0.746	DOWNSTREAM CG5062 INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl
X	21849726	X_21849726_SNP [dm3] X_22447890_SNP [dm6]	C	G	8.189e^-5	0.746	UTR_3_PRIME CG14615 DOWNSTREAM CG14621
3L	10886120	3L_10886120_SNP [dm3] 3L_10893020_SNP [dm6]	C	A	8.197e^-5	0.746	DOWNSTREAM Cpr67Fa2 & 1 other INTERGENIC
3R	18393517	3R_18393517_SNP [dm3] 3R_22567795_SNP [dm6]	C	T	8.202e^-5	0.746	INTERGENIC
3R	14680913	3R_14680913_SNP [dm3] 3R_18855191_SNP [dm6]	A	T	8.241e^-5	0.746	INTERGENIC
2R	16553973	2R_16553973_SNP [dm3] 2R_20666468_SNP [dm6]	C	G	8.257e^-5	0.746	UPSTREAM Fem-1 DOWNSTREAM exu INTRON Fem-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
X	4699281	X_4699281_DEL [dm3] X_4805248_DEL [dm6]	CGTTGAGCA	C	8.295e^-5	0.746	UPSTREAM CG2861 DOWNSTREAM CR45516 INTERGENIC
3R	12209847	3R_12209847_SNP [dm3] 3R_16384125_SNP [dm6]	G	T	8.364e^-5	0.746	INTRON ss	regulatory region REDfly_CRMs
2R	19665781	2R_19665781_SNP [dm3] 2R_23778258_SNP [dm6]	G	T	8.436e^-5	0.746	INTRON CG9850
2L	5443134	2L_5443134_SNP [dm3] 2L_5443134_SNP [dm6]	T	C	8.494e^-5	0.746	INTERGENIC
2L	746873	2L_746873_SNP [dm3] 2L_746873_SNP [dm6]	G	C	8.517e^-5	0.746	INTERGENIC
2L	4552378	2L_4552378_SNP [dm3] 2L_4552378_SNP [dm6]	A	G	8.526e^-5	0.746	INTRON dp	TF binding site mE1_TFBS_cad
2L	4546219	2L_4546219_SNP [dm3] 2L_4546219_SNP [dm6]	G	T	8.529e^-5	0.746	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23314215	3R_23314215_SNP [dm3] 3R_27488493_SNP [dm6]	T	G	8.674e^-5	0.746	NON_SYNONYMOUS_CODING Gr98a
2L	8839877	2L_8839877_SNP [dm3] 2L_8839877_SNP [dm6]	G	T	8.705e^-5	0.746	INTERGENIC
X	3383243	X_3383243_SNP [dm3] X_3489210_SNP [dm6]	G	T	8.710e^-5	0.746	UTR_3_PRIME CG10803 DOWNSTREAM CG10803 INTRON CR44999	TF binding site mE1_TFBS_HSA
2L	4501756	2L_4501756_SNP [dm3] 2L_4501756_SNP [dm6]	T	A	8.739e^-5	0.746	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6056368	3L_6056368_SNP [dm3] 3L_6063268_SNP [dm6]	T	A	8.819e^-5	0.746	UPSTREAM CG10472 INTERGENIC
3R	934498	3R_934498_SNP [dm3] 3R_5108776_SNP [dm6]	A	T	8.819e^-5	0.746	NON_SYNONYMOUS_CODING CG43131	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12328972	2L_12328972_DEL [dm3] 2L_12328972_DEL [dm6]	TT	T	8.834e^-5	0.746	INTERGENIC
2L	4811922	2L_4811922_SNP [dm3] 2L_4811922_SNP [dm6]	A	G	8.835e^-5	0.746	EXON CR45297	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2L	18027540	2L_18027540_SNP [dm3] 2L_18027540_SNP [dm6]	G	A	8.855e^-5	0.746	INTRON rdo
X	9492206	X_9492206_SNP [dm3] X_9598173_SNP [dm6]	C	A	8.941e^-5	0.746	INTERGENIC
2L	16656228	2L_16656228_SNP [dm3] 2L_16656228_SNP [dm6]	C	T	8.945e^-5	0.746	UPSTREAM CG42389 INTRON CG42389
3L	3754702	3L_3754702_SNP [dm3] 3L_3754702_SNP [dm6]	C	G	9.002e^-5	0.746	NON_SYNONYMOUS_CODING ppk27 INTRON CG32264
2R	17542978	2R_17542978_SNP [dm3] 2R_21655473_SNP [dm6]	A	G	9.110e^-5	0.746	SYNONYMOUS_CODING CG10082 DOWNSTREAM CR43786	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4503259	2L_4503259_SNP [dm3] 2L_4503259_SNP [dm6]	C	T	9.251e^-5	0.746	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13345686	2L_13345686_SNP [dm3] 2L_13345686_SNP [dm6]	A	T	9.311e^-5	0.746	INTERGENIC
3L	2665800	3L_2665800_SNP [dm3] 3L_2665800_SNP [dm6]	C	T	9.322e^-5	0.746	INTRON Fife
2L	4514683	2L_4514683_SNP [dm3] 2L_4514683_SNP [dm6]	G	T	9.338e^-5	0.746	INTRON dp
3L	2437721	3L_2437721_INS [dm3] 3L_2437721_INS [dm6]	C	CC	9.340e^-5	0.746	INTRON CG45186	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	4811233	2L_4811233_SNP [dm3] 2L_4811233_SNP [dm6]	C	G	9.351e^-5	0.746	DOWNSTREAM CR45297 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
X	5073593	X_5073593_SNP [dm3] X_5179560_SNP [dm6]	G	C	9.365e^-5	0.746	DOWNSTREAM CG5062 INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl
X	6456083	X_6456083_SNP [dm3] X_6562050_SNP [dm6]	G	T	9.409e^-5	0.746	NON_SYNONYMOUS_CODING CG34417	TF binding site mE1_TFBS_sens
3R	26859457	3R_26859457_SNP [dm3] 3R_31033735_SNP [dm6]	T	C	9.539e^-5	0.746	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	6640523	3R_6640523_SNP [dm3] 3R_10814801_SNP [dm6]	G	T	9.547e^-5	0.746	SYNONYMOUS_CODING CG14693 UPSTREAM CG4089
2L	16673854	2L_16673854_SNP [dm3] 2L_16673854_SNP [dm6]	C	A	9.564e^-5	0.746	INTRON Trpgamma
X	21099126	X_21099126_SNP [dm3] X_21228099_SNP [dm6]	A	T	9.571e^-5	0.746	INTRON CG32521
3R	26858211	3R_26858211_SNP [dm3] 3R_31032489_SNP [dm6]	G	A	9.594e^-5	0.746	INTERGENIC
X	4590191	X_4590191_SNP [dm3] X_4696158_SNP [dm6]	C	T	9.633e^-5	0.746	INTRON ctp
2L	5098135	2L_5098135_SNP [dm3] 2L_5098135_SNP [dm6]	T	G	9.686e^-5	0.746	SYNONYMOUS_CODING CG4230	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5561268	2L_5561268_SNP [dm3] 2L_5561268_SNP [dm6]	C	T	9.803e^-5	0.746	SYNONYMOUS_CODING GluRIIB
3R	15826465	3R_15826465_SNP [dm3] 3R_20000743_SNP [dm6]	A	T	9.809e^-5	0.746	INTRON Hs6st	TF binding site BDTNP1_TFBS_twi
3L	14708477	3L_14708477_SNP [dm3] 3L_14715377_SNP [dm6]	A	T	9.823e^-5	0.746	INTRON ome
2L	13986062	2L_13986062_SNP [dm3] 2L_13986062_SNP [dm6]	G	C	9.828e^-5	0.746	SPLICE_SITE_REGION rk INTRON rk
3R	15826615	3R_15826615_SNP [dm3] 3R_20000893_SNP [dm6]	A	T	9.982e^-5	0.746	INTRON Hs6st	TF binding site BDTNP1_TFBS_twi
2L	346923	2L_346923_SNP [dm3] 2L_346923_SNP [dm6]	A	T	9.995e^-5	0.746	UTR_3_PRIME Plc21C DOWNSTREAM Plc21C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20430305	X_20430305_SNP [dm3] X_20559278_SNP [dm6]	T	A	1.002e^-4	0.746	INTRON RunxB
3R	19565253	3R_19565253_SNP [dm3] 3R_23739531_SNP [dm6]	C	T	1.011e^-4	0.746	INTRON Hmgcr
2L	4811920	2L_4811920_SNP [dm3] 2L_4811920_SNP [dm6]	G	T	1.021e^-4	0.746	EXON CR45297	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2R	9456582	2R_9456582_SNP [dm3] 2R_13569077_SNP [dm6]	C	A	1.023e^-4	0.746	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_ttk mE1_TFBS_zfh1
2L	6491947	2L_6491947_SNP [dm3] 2L_6491947_SNP [dm6]	A	G	1.024e^-4	0.746	SYNONYMOUS_CODING CG31638	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	11110060	3L_11110060_SNP [dm3] 3L_11116960_SNP [dm6]	G	T	1.025e^-4	0.746	NON_SYNONYMOUS_CODING fd68A	TF binding site BDTNP1_TFBS_dl
3L	2963355	3L_2963355_SNP [dm3] 3L_2963355_SNP [dm6]	C	T	1.027e^-4	0.746	SYNONYMOUS_CODING Or63a UTR_3_PRIME Or63a
2L	4503437	2L_4503437_SNP [dm3] 2L_4503437_SNP [dm6]	G	A	1.032e^-4	0.746	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6245013	2L_6245013_SNP [dm3] 2L_6245013_SNP [dm6]	C	A	1.035e^-4	0.746	INTERGENIC
2R	16547831	2R_16547831_SNP [dm3] 2R_20660326_SNP [dm6]	G	C	1.041e^-4	0.746	NON_SYNONYMOUS_CODING Lrt
2L	4546687	2L_4546687_SNP [dm3] 2L_4546687_SNP [dm6]	A	G	1.041e^-4	0.746	NON_SYNONYMOUS_CODING dp INTRON dp
2L	13046566	2L_13046566_SNP [dm3] 2L_13046566_SNP [dm6]	A	T	1.044e^-4	0.746	INTRON CG9932
4	875377	4_875377_SNP [dm3] 4_854751_SNP [dm6]	T	A	1.049e^-4	0.746	DOWNSTREAM CG11148 INTRON CG11148	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	7440910	2L_7440910_SNP [dm3] 2L_7440910_SNP [dm6]	G	T	1.062e^-4	0.746	UTR_5_PRIME CG5973 INTRON CG5973
2L	5443143	2L_5443143_SNP [dm3] 2L_5443143_SNP [dm6]	A	T	1.066e^-4	0.746	INTERGENIC
2L	13157086	2L_13157086_SNP [dm3] 2L_13157086_SNP [dm6]	A	G	1.067e^-4	0.746	INTERGENIC
2L	13046568	2L_13046568_SNP [dm3] 2L_13046568_SNP [dm6]	A	T	1.073e^-4	0.746	INTRON CG9932
2R	20231867	2R_20231867_SNP [dm3] 2R_24344344_SNP [dm6]	G	A	1.074e^-4	0.746	SYNONYMOUS_CODING bs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16547835	2R_16547835_SNP [dm3] 2R_20660330_SNP [dm6]	G	C	1.075e^-4	0.746	SYNONYMOUS_CODING Lrt
X	3546025	X_3546025_SNP [dm3] X_3651992_SNP [dm6]	A	G	1.077e^-4	0.746	INTRON AstA-R1
2L	18269237	2L_18269237_SNP [dm3] 2L_18269237_SNP [dm6]	C	T	1.082e^-4	0.746	INTRON CG42750
3R	25230798	3R_25230798_SNP [dm3] 3R_29405076_SNP [dm6]	A	G	1.084e^-4	0.746	INTRON Ptp99A
2L	18461397	2L_18461397_SNP [dm3] 2L_18461397_SNP [dm6]	C	G	1.085e^-4	0.746	INTRON let-7-C
3R	23315473	3R_23315473_SNP [dm3] 3R_27489751_SNP [dm6]	T	C	1.090e^-4	0.746	UTR_3_PRIME Gr98a
2L	4502833	2L_4502833_SNP [dm3] 2L_4502833_SNP [dm6]	T	A	1.091e^-4	0.746	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	17455851	3L_17455851_SNP [dm3] 3L_17462751_SNP [dm6]	G	A	1.099e^-4	0.746	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4502560	2L_4502560_SNP [dm3] 2L_4502560_SNP [dm6]	G	C	1.106e^-4	0.746	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
4	715227	4_715227_SNP [dm3] 4_694601_SNP [dm6]	T	C	1.110e^-4	0.746	INTRON myo	TF binding site BDTNP1_TFBS_dl
2L	18450120	2L_18450120_SNP [dm3] 2L_18450120_SNP [dm6]	G	C	1.114e^-4	0.746	SYNONYMOUS_CODING bsf	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	3850559	2L_3850559_SNP [dm3] 2L_3850559_SNP [dm6]	G	A	1.121e^-4	0.746	INTERGENIC
2L	7387557	2L_7387557_SNP [dm3] 2L_7387557_SNP [dm6]	C	G	1.125e^-4	0.746	UPSTREAM gudu INTRON CG5149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16656998	2L_16656998_SNP [dm3] 2L_16656998_SNP [dm6]	G	A	1.127e^-4	0.746	UPSTREAM CG42389 INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Ubx
3R	23234546	3R_23234546_SNP [dm3] 3R_27408824_SNP [dm6]	T	C	1.130e^-4	0.746	INTRON side
2L	16656345	2L_16656345_SNP [dm3] 2L_16656345_SNP [dm6]	G	A	1.131e^-4	0.746	UPSTREAM CG42389 INTRON CG42389
X	8095044	X_8095044_SNP [dm3] X_8201011_SNP [dm6]	G	A	1.140e^-4	0.746	INTRON sdt
2L	356857	2L_356857_SNP [dm3] 2L_356857_SNP [dm6]	A	G	1.143e^-4	0.746	UPSTREAM CR45366 INTRON Ent1 EXON CR45367	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9414222	2L_9414222_SNP [dm3] 2L_9414222_SNP [dm6]	C	A	1.149e^-4	0.746	INTRON Shawl
2L	6695312	2L_6695312_SNP [dm3] 2L_6695312_SNP [dm6]	A	G	1.150e^-4	0.746	INTRON Tsp
X	6563344	X_6563344_SNP [dm3] X_6669311_SNP [dm6]	A	T	1.150e^-4	0.746	UTR_3_PRIME CG3198	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18393519	3R_18393519_SNP [dm3] 3R_22567797_SNP [dm6]	T	A	1.154e^-4	0.746	INTERGENIC
2L	4502078	2L_4502078_SNP [dm3] 2L_4502078_SNP [dm6]	G	A	1.156e^-4	0.746	INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	24540266	3R_24540266_DEL [dm3] 3R_28714544_DEL [dm6]	TCTCCACTCGGAGT...	T	1.167e^-4	0.746	INTRON htt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	465450	2R_465450_SNP [dm3] 2R_4577945_SNP [dm6]	T	G	1.168e^-4	0.746	INTERGENIC
X	22065081	X_22065081_SNP [dm3] X_22663245_SNP [dm6]	A	G	1.170e^-4	0.746	INTRON CR44997
3R	25991277	3R_25991277_SNP [dm3] 3R_30165555_SNP [dm6]	A	G	1.186e^-4	0.746	SYNONYMOUS_CODING CG31030	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	7213908	X_7213908_SNP [dm3] X_7319875_SNP [dm6]	T	G	1.191e^-4	0.746	INTRON CR44357 & 2 others	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2667983	3L_2667983_SNP [dm3] 3L_2667983_SNP [dm6]	C	A	1.197e^-4	0.746	INTRON Fife
X	16049207	X_16049207_SNP [dm3] X_16155174_SNP [dm6]	G	T	1.198e^-4	0.746	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	18462569	2L_18462569_MNP [dm3] 2L_18462569_MNP [dm6]	AGA	TTT	1.203e^-4	0.746	INTRON let-7-C	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
X	14697195	X_14697195_SNP [dm3] X_14803162_SNP [dm6]	G	A	1.203e^-4	0.746	INTRON rut
3L	12115929	3L_12115929_SNP [dm3] 3L_12122829_SNP [dm6]	T	G	1.208e^-4	0.746	SPLICE_SITE_REGION yps INTRON yps	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_chinmo
2R	20194581	2R_20194581_SNP [dm3] 2R_24307058_SNP [dm6]	T	C	1.208e^-4	0.746	INTRON betaTub60D	regulatory region REDfly_CRMs
2R	15597150	2R_15597150_SNP [dm3] 2R_19709645_SNP [dm6]	C	T	1.211e^-4	0.746	INTERGENIC	regulatory region REDfly_CRMs
2L	4502843	2L_4502843_SNP [dm3] 2L_4502843_SNP [dm6]	A	G	1.214e^-4	0.746	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
4	1102424	4_1102424_SNP [dm3] 4_1081798_SNP [dm6]	T	A	1.218e^-4	0.746	INTRON Actbeta
2L	12981209	2L_12981209_SNP [dm3] 2L_12981209_SNP [dm6]	A	G	1.219e^-4	0.746	UTR_3_PRIME Vha68-3
3R	25826029	3R_25826029_SNP [dm3] 3R_30000307_SNP [dm6]	T	A	1.220e^-4	0.746	SYNONYMOUS_CODING CG34298 UPSTREAM Tace DOWNSTREAM CG11504	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	2663896	3L_2663896_SNP [dm3] 3L_2663896_SNP [dm6]	T	C	1.225e^-4	0.746	DOWNSTREAM CG33234 INTRON Fife
2L	17863769	2L_17863769_SNP [dm3] 2L_17863769_SNP [dm6]	G	C	1.231e^-4	0.746	INTRON CadN2
2L	18166304	2L_18166304_SNP [dm3] 2L_18166304_SNP [dm6]	A	T	1.239e^-4	0.746	INTRON CG42750
2R	3455052	2R_3455052_SNP [dm3] 2R_7567547_SNP [dm6]	A	T	1.241e^-4	0.746	UPSTREAM boca INTRON Vps13	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	25991325	3R_25991325_SNP [dm3] 3R_30165603_SNP [dm6]	G	A	1.245e^-4	0.746	SYNONYMOUS_CODING CG31030	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14266868	2R_14266868_SNP [dm3] 2R_18379363_SNP [dm6]	A	G	1.246e^-4	0.746	INTERGENIC	TF binding site mE1_TFBS_cad
4	466746	4_466746_SNP [dm3] 4_446120_SNP [dm6]	G	A	1.254e^-4	0.746	UTR_5_PRIME CaMKI UPSTREAM CaMKI INTRON CaMKI	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn
3L	2667944	3L_2667944_SNP [dm3] 3L_2667944_SNP [dm6]	T	C	1.255e^-4	0.746	INTRON Fife
X	6725048	X_6725048_SNP [dm3] X_6831015_SNP [dm6]	A	G	1.266e^-4	0.746	SYNONYMOUS_CODING nonC DOWNSTREAM CG12796	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7500401	2L_7500401_SNP [dm3] 2L_7500401_SNP [dm6]	A	G	1.268e^-4	0.746	SYNONYMOUS_CODING RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	2612442	3R_2612442_INS [dm3] 3R_6786720_INS [dm6]	A	AGGGGATTTATCAAGCATGG...	1.275e^-4	0.746	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_inv
2L	16656573	2L_16656573_SNP [dm3] 2L_16656573_SNP [dm6]	A	G	1.281e^-4	0.746	UPSTREAM CG42389 INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9610983	2L_9610983_SNP [dm3] 2L_9610983_SNP [dm6]	C	T	1.281e^-4	0.746	SYNONYMOUS_CODING gcm2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	7387533	2L_7387533_SNP [dm3] 2L_7387533_SNP [dm6]	C	A	1.285e^-4	0.746	UPSTREAM gudu INTRON CG5149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16083085	X_16083085_SNP [dm3] X_16189052_SNP [dm6]	T	G	1.310e^-4	0.746	INTERGENIC
3L	3349836	3L_3349836_SNP [dm3] 3L_3349836_SNP [dm6]	C	A	1.311e^-4	0.746	UPSTREAM kst INTRON kst	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
4	1219398	4_1219398_SNP [dm3] 4_1198772_SNP [dm6]	G	A	1.315e^-4	0.746	UPSTREAM Mitf INTERGENIC
2L	13750633	2L_13750633_DEL [dm3] 2L_13750633_DEL [dm6]	AG	A	1.323e^-4	0.746	INTRON CR44846 & 1 other
2L	4502644	2L_4502644_SNP [dm3] 2L_4502644_SNP [dm6]	G	A	1.324e^-4	0.746	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	13046565	2L_13046565_SNP [dm3] 2L_13046565_SNP [dm6]	A	C	1.331e^-4	0.746	INTRON CG9932
X	16046541	X_16046541_SNP [dm3] X_16152508_SNP [dm6]	G	T	1.334e^-4	0.746	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2416406	3L_2416406_SNP [dm3] 3L_2416406_SNP [dm6]	G	A	1.337e^-4	0.746	INTRON CG45186
3L	10769640	3L_10769640_SNP [dm3] 3L_10776540_SNP [dm6]	C	A	1.338e^-4	0.746	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	13910595	2L_13910595_SNP [dm3] 2L_13910595_SNP [dm6]	T	C	1.343e^-4	0.746	SYNONYMOUS_CODING Ance-2	TF binding site mE1_TFBS_cad
2R	16076273	2R_16076273_INS [dm3] 2R_20188768_INS [dm6]	A	ACATA	1.351e^-4	0.746	INTERGENIC
2R	15597192	2R_15597192_SNP [dm3] 2R_19709687_SNP [dm6]	C	A	1.367e^-4	0.746	INTERGENIC	regulatory region REDfly_CRMs
X	12874799	X_12874799_SNP [dm3] X_12980766_SNP [dm6]	G	A	1.371e^-4	0.746	INTERGENIC
3L	16165753	3L_16165753_SNP [dm3] 3L_16172653_SNP [dm6]	G	A	1.372e^-4	0.746	INTERGENIC
X	10501534	X_10501534_SNP [dm3] X_10607501_SNP [dm6]	A	G	1.372e^-4	0.746	SYNONYMOUS_CODING CG43347	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15123018	2L_15123018_DEL [dm3] 2L_15123018_DEL [dm6]	TT	T	1.374e^-4	0.746	INTERGENIC
3R	13589759	3R_13589759_SNP [dm3] 3R_17764037_SNP [dm6]	C	T	1.376e^-4	0.746	UPSTREAM TyrR INTERGENIC
3R	14677006	3R_14677006_SNP [dm3] 3R_18851284_SNP [dm6]	C	A	1.376e^-4	0.746	UPSTREAM CR45633 DOWNSTREAM CG31226 INTERGENIC
3R	23313515	3R_23313515_SNP [dm3] 3R_27487793_SNP [dm6]	G	A	1.379e^-4	0.746	UPSTREAM Gr98a INTERGENIC
2L	4552365	2L_4552365_SNP [dm3] 2L_4552365_SNP [dm6]	T	C	1.379e^-4	0.746	INTRON dp
2L	16656916	2L_16656916_SNP [dm3] 2L_16656916_SNP [dm6]	C	A	1.382e^-4	0.746	UPSTREAM CG42389 INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Ubx
2L	4810851	2L_4810851_SNP [dm3] 2L_4810851_SNP [dm6]	T	A	1.383e^-4	0.746	DOWNSTREAM CR45297 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3L	9933305	3L_9933305_SNP [dm3] 3L_9940205_SNP [dm6]	G	T	1.391e^-4	0.746	INTRON CG34356
2L	7618419	2L_7618419_SNP [dm3] 2L_7618419_SNP [dm6]	C	A	1.397e^-4	0.746	INTERGENIC
2L	7357517	2L_7357517_SNP [dm3] 2L_7357517_SNP [dm6]	T	C	1.398e^-4	0.746	INTERGENIC
3L	2439565	3L_2439565_SNP [dm3] 3L_2439565_SNP [dm6]	G	C	1.399e^-4	0.746	SYNONYMOUS_CODING CG45186 UTR_5_PRIME CG45186	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6058608	2R_6058608_SNP [dm3] 2R_10171103_SNP [dm6]	A	T	1.401e^-4	0.746	INTRON KCNQ
X	7147156	X_7147156_SNP [dm3] X_7253123_SNP [dm6]	A	T	1.416e^-4	0.746	INTRON CR44357	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2L	16653977	2L_16653977_SNP [dm3] 2L_16653977_SNP [dm6]	C	T	1.416e^-4	0.746	INTRON CG42389	TF binding site mE1_TFBS_inv
2L	16656973	2L_16656973_SNP [dm3] 2L_16656973_SNP [dm6]	T	A	1.423e^-4	0.746	UPSTREAM CG42389 INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Ubx
2R	19152335	2R_19152335_SNP [dm3] 2R_23264812_SNP [dm6]	A	C	1.424e^-4	0.746	SYNONYMOUS_CODING CG12782	TF binding site mE1_TFBS_chinmo
3R	20027856	3R_20027856_SNP [dm3] 3R_24202134_SNP [dm6]	G	T	1.427e^-4	0.746	INTRON twin
4	1047949	4_1047949_SNP [dm3] 4_1027323_SNP [dm6]	A	G	1.430e^-4	0.746	UPSTREAM CR44031 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Ubx
3L	16274823	3L_16274823_SNP [dm3] 3L_16281723_SNP [dm6]	T	A	1.431e^-4	0.746	SYNONYMOUS_CODING CG13049 DOWNSTREAM CG13064	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18605442	3L_18605442_SNP [dm3] 3L_18612342_SNP [dm6]	T	C	1.440e^-4	0.746	SYNONYMOUS_CODING CG32199 DOWNSTREAM CG32201 INTRON CG4174 & 1 other
3L	1892357	3L_1892357_SNP [dm3] 3L_1892357_SNP [dm6]	A	C	1.451e^-4	0.746	DOWNSTREAM Tmhs INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	3546696	X_3546696_SNP [dm3] X_3652663_SNP [dm6]	A	C	1.453e^-4	0.746	INTRON AstA-R1
2R	16685397	2R_16685397_SNP [dm3] 2R_20797892_SNP [dm6]	G	T	1.463e^-4	0.746	INTERGENIC
3L	9148478	3L_9148478_INS [dm3] 3L_9155378_INS [dm6]	C	CATC	1.472e^-4	0.746	INTRON Rdl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1173331	3L_1173331_SNP [dm3] 3L_1173331_SNP [dm6]	A	G	1.474e^-4	0.746	SYNONYMOUS_CODING bab2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2657716	3L_2657716_SNP [dm3] 3L_2657716_SNP [dm6]	T	C	1.476e^-4	0.746	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_chinmo
2R	20194526	2R_20194526_SNP [dm3] 2R_24307003_SNP [dm6]	A	G	1.480e^-4	0.746	INTRON betaTub60D	regulatory region REDfly_CRMs
3R	26009899	3R_26009899_SNP [dm3] 3R_30184177_SNP [dm6]	C	T	1.494e^-4	0.746	EXON CR44262
2L	13986056	2L_13986056_SNP [dm3] 2L_13986056_SNP [dm6]	G	A	1.499e^-4	0.746	INTRON rk
2L	17866616	2L_17866616_SNP [dm3] 2L_17866616_SNP [dm6]	C	A	1.501e^-4	0.746	INTRON CadN2
2L	9282081	2L_9282081_SNP [dm3] 2L_9282081_SNP [dm6]	T	C	1.505e^-4	0.746	INTRON Ggamma30A
4	1255093	4_1255093_SNP [dm3] 4_1251367_SNP [dm6]	G	T	1.512e^-4	0.746	INTRON Caps
2L	4552366	2L_4552366_SNP [dm3] 2L_4552366_SNP [dm6]	C	T	1.513e^-4	0.746	INTRON dp	TF binding site mE1_TFBS_cad
3R	26969613	3R_26969613_SNP [dm3] 3R_31143891_SNP [dm6]	G	T	1.515e^-4	0.746	INTRON Gycbeta100B
2L	17865851	2L_17865851_SNP [dm3] 2L_17865851_SNP [dm6]	C	A	1.528e^-4	0.746	INTRON CadN2
X	16083076	X_16083076_SNP [dm3] X_16189043_SNP [dm6]	C	T	1.528e^-4	0.746	INTERGENIC
X	16083077	X_16083077_SNP [dm3] X_16189044_SNP [dm6]	A	T	1.528e^-4	0.746	INTERGENIC
3L	21633340	3L_21633340_SNP [dm3] 3L_21640240_SNP [dm6]	C	G	1.538e^-4	0.746	SYNONYMOUS_CODING CG32445 UPSTREAM Atox1	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	14707677	3L_14707677_SNP [dm3] 3L_14714577_SNP [dm6]	A	C	1.541e^-4	0.746	INTRON ome
3L	681805	3L_681805_SNP [dm3] 3L_681805_SNP [dm6]	G	A	1.542e^-4	0.746	INTRON CG3386	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12236607	2L_12236607_SNP [dm3] 2L_12236607_SNP [dm6]	G	T	1.543e^-4	0.746	INTRON aret
X	3904039	X_3904039_SNP [dm3] X_4010006_SNP [dm6]	A	G	1.543e^-4	0.746	INTERGENIC
2R	16547706	2R_16547706_SNP [dm3] 2R_20660201_SNP [dm6]	G	T	1.548e^-4	0.746	SYNONYMOUS_CODING Lrt
2L	7387478	2L_7387478_SNP [dm3] 2L_7387478_SNP [dm6]	T	A	1.549e^-4	0.746	INTRON CG5149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	19922737	2R_19922737_SNP [dm3] 2R_24035214_SNP [dm6]	T	C	1.553e^-4	0.746	SYNONYMOUS_CODING MAN1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	7147167	X_7147167_SNP [dm3] X_7253134_SNP [dm6]	A	G	1.563e^-4	0.746	INTRON CR44357	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
X	20408788	X_20408788_SNP [dm3] X_20537761_SNP [dm6]	G	T	1.563e^-4	0.746	UPSTREAM RunxB INTERGENIC
X	16212715	X_16212715_INS [dm3] X_16318682_INS [dm6]	T	TAAGCA	1.565e^-4	0.746	DOWNSTREAM CG13957 INTRON Cyp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
X	18329330	X_18329330_INS [dm3] X_18435297_INS [dm6]	G	GAGCCGGG	1.565e^-4	0.746	DOWNSTREAM CG32548 INTERGENIC
2L	16655186	2L_16655186_SNP [dm3] 2L_16655186_SNP [dm6]	G	T	1.566e^-4	0.746	INTRON CG42389
3L	9808756	3L_9808756_SNP [dm3] 3L_9815656_SNP [dm6]	A	T	1.571e^-4	0.746	UPSTREAM CG43897 INTRON CG43897
3L	7741045	3L_7741045_SNP [dm3] 3L_7747945_SNP [dm6]	A	C	1.577e^-4	0.746	NON_SYNONYMOUS_CODING CG13685 INTRON CG32373	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	17370309	X_17370309_SNP [dm3] X_17476276_SNP [dm6]	T	A	1.580e^-4	0.746	UPSTREAM CG43658 INTRON CG43658
2L	16651604	2L_16651604_SNP [dm3] 2L_16651604_SNP [dm6]	T	G	1.584e^-4	0.746	INTRON CG42389
2R	9922168	2R_9922168_SNP [dm3] 2R_14034663_SNP [dm6]	C	T	1.586e^-4	0.746	INTRON mam
2L	7480177	2L_7480177_SNP [dm3] 2L_7480177_SNP [dm6]	A	C	1.587e^-4	0.746	SYNONYMOUS_CODING Ziz
2L	9310931	2L_9310931_SNP [dm3] 2L_9310931_SNP [dm6]	T	C	1.589e^-4	0.746	INTERGENIC
X	4685359	X_4685359_SNP [dm3] X_4791326_SNP [dm6]	C	G	1.589e^-4	0.746	INTERGENIC
2R	17582635	2R_17582635_SNP [dm3] 2R_21695130_SNP [dm6]	G	C	1.591e^-4	0.746	SYNONYMOUS_CODING CngB	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	18329212	2L_18329212_SNP [dm3] 2L_18329212_SNP [dm6]	T	A	1.593e^-4	0.746	INTRON Fas3
2L	8137567	2L_8137567_SNP [dm3] 2L_8137567_SNP [dm6]	G	A	1.594e^-4	0.746	SYNONYMOUS_CODING CG8552 UTR_5_PRIME CG8552	TF binding site mE1_TFBS_cad
X	17231529	X_17231529_SNP [dm3] X_17337496_SNP [dm6]	T	C	1.605e^-4	0.746	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	232131	2L_232131_SNP [dm3] 2L_232131_SNP [dm6]	A	T	1.606e^-4	0.746	UPSTREAM CG13693 DOWNSTREAM snoRNA:kis-a INTRON kis
2R	8514687	2R_8514687_SNP [dm3] 2R_12627182_SNP [dm6]	C	A	1.609e^-4	0.746	INTRON CG17760
2R	17098516	2R_17098516_SNP [dm3] 2R_21211011_SNP [dm6]	C	A	1.612e^-4	0.746	UTR_5_PRIME CG44245 DOWNSTREAM Glycogenin INTRON CG44245
3R	23289727	3R_23289727_SNP [dm3] 3R_27464005_SNP [dm6]	C	T	1.613e^-4	0.746	UPSTREAM CG13978 INTERGENIC
2L	17539036	2L_17539036_SNP [dm3] 2L_17539036_SNP [dm6]	G	A	1.613e^-4	0.746	INTERGENIC
3L	11175057	3L_11175057_SNP [dm3] 3L_11181957_SNP [dm6]	G	T	1.614e^-4	0.746	INTRON GlcAT-P
X	10537938	X_10537938_SNP [dm3] X_10643905_SNP [dm6]	T	C	1.622e^-4	0.746	INTRON X11Lbeta
2L	16701986	2L_16701986_SNP [dm3] 2L_16701986_SNP [dm6]	T	A	1.627e^-4	0.746	EXON CR43670	TF binding site mE1_TFBS_sens
3R	23255981	3R_23255981_SNP [dm3] 3R_27430259_SNP [dm6]	T	A	1.631e^-4	0.746	INTRON side
2R	15833244	2R_15833244_SNP [dm3] 2R_19945739_SNP [dm6]	C	T	1.635e^-4	0.746	UTR_3_PRIME CG42691 UPSTREAM CG43195 & 1 other DOWNSTREAM CG42691
2L	7352016	2L_7352016_SNP [dm3] 2L_7352016_SNP [dm6]	A	G	1.641e^-4	0.746	SYNONYMOUS_CODING Wnt6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	462116	3L_462116_SNP [dm3] 3L_462116_SNP [dm6]	G	C	1.644e^-4	0.746	INTRON klar
3L	15884625	3L_15884625_SNP [dm3] 3L_15891525_SNP [dm6]	A	G	1.646e^-4	0.746	INTRON pHCl
2R	11446139	2R_11446139_SNP [dm3] 2R_15558634_SNP [dm6]	A	G	1.646e^-4	0.746	UPSTREAM CG12963 INTRON CG12963	TF binding site BDTNP1_TFBS_da
3R	20027846	3R_20027846_SNP [dm3] 3R_24202124_SNP [dm6]	T	G	1.647e^-4	0.746	INTRON twin
X	10504815	X_10504815_SNP [dm3] X_10610782_SNP [dm6]	G	A	1.650e^-4	0.746	INTRON CG43347	TF binding site mE1_TFBS_chinmo
3R	13589764	3R_13589764_SNP [dm3] 3R_17764042_SNP [dm6]	T	A	1.654e^-4	0.746	UPSTREAM TyrR INTERGENIC
2L	18444977	2L_18444977_SNP [dm3] 2L_18444977_SNP [dm6]	T	C	1.657e^-4	0.746	NON_SYNONYMOUS_CODING ncm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	7998792	2L_7998792_SNP [dm3] 2L_7998792_SNP [dm6]	C	T	1.659e^-4	0.746	UPSTREAM Sirup & 1 other DOWNSTREAM Wwox INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	9342351	3L_9342351_SNP [dm3] 3L_9349251_SNP [dm6]	A	T	1.661e^-4	0.746	UPSTREAM PGRP-LF DOWNSTREAM PGRP-LC INTERGENIC
2L	16210930	2L_16210930_INS [dm3] 2L_16210930_INS [dm6]	C	CTTGGATGAGACTGGC...	1.662e^-4	0.746	UPSTREAM CG31819 INTERGENIC
X	20431516	X_20431516_SNP [dm3] X_20560489_SNP [dm6]	A	G	1.666e^-4	0.746	INTRON RunxB
X	16083080	X_16083080_SNP [dm3] X_16189047_SNP [dm6]	G	T	1.668e^-4	0.746	INTERGENIC
X	16083082	X_16083082_DEL [dm3] X_16189049_DEL [dm6]	TC	A	1.668e^-4	0.746	INTERGENIC
3L	9643193	3L_9643193_SNP [dm3] 3L_9650093_SNP [dm6]	G	A	1.671e^-4	0.746	INTRON fry & 1 other
3L	9643196	3L_9643196_DEL [dm3] 3L_9650096_DEL [dm6]	GAGC	G	1.671e^-4	0.746	INTRON fry & 1 other
2R	8925229	2R_8925229_SNP [dm3] 2R_13037724_SNP [dm6]	T	C	1.680e^-4	0.746	INTERGENIC
2L	7567868	2L_7567868_SNP [dm3] 2L_7567868_SNP [dm6]	T	C	1.683e^-4	0.746	INTRON RapGAP1
3L	14707610	3L_14707610_SNP [dm3] 3L_14714510_SNP [dm6]	G	A	1.685e^-4	0.746	INTRON ome
2R	7312570	2R_7312570_SNP [dm3] 2R_11425065_SNP [dm6]	C	T	1.685e^-4	0.746	UPSTREAM Drip INTRON Drip	TF binding site mE1_TFBS_inv
2L	16693897	2L_16693897_SNP [dm3] 2L_16693897_SNP [dm6]	G	A	1.686e^-4	0.746	INTRON grp
2L	3375717	2L_3375717_SNP [dm3] 2L_3375717_SNP [dm6]	C	A	1.687e^-4	0.746	UPSTREAM CG15412 DOWNSTREAM CG9662 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	4560988	2L_4560988_SNP [dm3] 2L_4560988_SNP [dm6]	G	A	1.687e^-4	0.746	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	6525595	2L_6525595_SNP [dm3] 2L_6525595_SNP [dm6]	C	A	1.689e^-4	0.746	INTRON CG31637	TF binding site mE1_TFBS_sens
2L	17640233	2L_17640233_SNP [dm3] 2L_17640233_SNP [dm6]	T	G	1.690e^-4	0.746	INTERGENIC
2L	21285916	2L_21285916_SNP [dm3] 2L_21285916_SNP [dm6]	T	G	1.710e^-4	0.746	DOWNSTREAM Mio INTERGENIC
2L	7387488	2L_7387488_SNP [dm3] 2L_7387488_SNP [dm6]	T	C	1.715e^-4	0.746	INTRON CG5149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	13156998	2L_13156998_SNP [dm3] 2L_13156998_SNP [dm6]	A	C	1.717e^-4	0.746	INTERGENIC
4	947600	4_947600_SNP [dm3] 4_926974_SNP [dm6]	G	A	1.723e^-4	0.746	INTRON eIF4G
X	16212717	X_16212717_SNP [dm3] X_16318684_SNP [dm6]	C	G	1.724e^-4	0.746	DOWNSTREAM CG13957 INTRON Cyp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	10679575	3L_10679575_SNP [dm3] 3L_10686475_SNP [dm6]	A	C	1.730e^-4	0.746	INTRON simj
3R	19844166	3R_19844166_SNP [dm3] 3R_24018444_SNP [dm6]	T	C	1.730e^-4	0.746	INTRON KrT95D
2L	17863742	2L_17863742_SNP [dm3] 2L_17863742_SNP [dm6]	T	C	1.734e^-4	0.746	INTRON CadN2
3R	8096019	3R_8096019_SNP [dm3] 3R_12270297_SNP [dm6]	C	T	1.736e^-4	0.746	UPSTREAM CG17738 DOWNSTREAM CR44039 INTRON svp
3L	4872896	3L_4872896_SNP [dm3] 3L_4872896_SNP [dm6]	C	T	1.738e^-4	0.746	SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
4	902241	4_902241_DEL [dm3] 4_881615_DEL [dm6]	GGTGGTTTA	G	1.741e^-4	0.746	INTRON unc-13 EXON CR44029
3L	494797	3L_494797_INS [dm3] 3L_494797_INS [dm6]	A	AA	1.751e^-4	0.746	INTRON klar
X	7244915	X_7244915_SNP [dm3] X_7350882_SNP [dm6]	T	A	1.752e^-4	0.746	INTRON CR44357 & 1 other
2L	16664364	2L_16664364_SNP [dm3] 2L_16664364_SNP [dm6]	C	A	1.752e^-4	0.746	UTR_3_PRIME Trpgamma DOWNSTREAM Trpgamma
X	20431545	X_20431545_SNP [dm3] X_20560518_SNP [dm6]	A	T	1.762e^-4	0.746	INTRON RunxB
2R	16756126	2R_16756126_SNP [dm3] 2R_20868621_SNP [dm6]	T	G	1.763e^-4	0.746	UTR_3_PRIME IM4 DOWNSTREAM IM4
X	3615088	X_3615088_SNP [dm3] X_3721055_SNP [dm6]	G	T	1.764e^-4	0.746	INTRON tlk	TF binding site BDTNP1_TFBS_dl
X	2627996	X_2627996_SNP [dm3] X_2733963_SNP [dm6]	C	T	1.766e^-4	0.746	SYNONYMOUS_CODING CG2712 DOWNSTREAM crm	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
4	1235008	4_1235008_DEL [dm3] 4_1231282_DEL [dm6]	TTTCTATCGATTTGCCAACA...	T	1.766e^-4	0.746	UPSTREAM Dyrk3 & 1 other INTRON Caps	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	5326980	3L_5326980_SNP [dm3] 3L_5333880_SNP [dm6]	G	A	1.786e^-4	0.746	UPSTREAM CR45742 INTERGENIC
2L	9646496	2L_9646496_SNP [dm3] 2L_9646496_SNP [dm6]	T	A	1.791e^-4	0.746	INTRON Apoltp
2R	8913727	2R_8913727_SNP [dm3] 2R_13026222_SNP [dm6]	C	A	1.799e^-4	0.746	INTERGENIC
2L	4702862	2L_4702862_SNP [dm3] 2L_4702862_SNP [dm6]	G	T	1.802e^-4	0.746	INTRON CG34351
2L	3830053	2L_3830053_SNP [dm3] 2L_3830053_SNP [dm6]	A	T	1.810e^-4	0.746	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7244952	X_7244952_SNP [dm3] X_7350919_SNP [dm6]	T	C	1.811e^-4	0.746	INTRON CR44357 & 1 other
2L	4907076	2L_4907076_MNP [dm3] 2L_4907076_MNP [dm6]	TTGA	GAAG	1.817e^-4	0.746	UPSTREAM CG2837 INTERGENIC
3R	23278866	3R_23278866_SNP [dm3] 3R_27453144_SNP [dm6]	G	C	1.819e^-4	0.746	INTERGENIC
3L	15749235	3L_15749235_SNP [dm3] 3L_15756135_SNP [dm6]	T	G	1.819e^-4	0.746	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	1321771	3L_1321771_SNP [dm3] 3L_1321771_SNP [dm6]	A	G	1.824e^-4	0.746	DOWNSTREAM CG9184 INTRON Myo61F
3L	1321779	3L_1321779_SNP [dm3] 3L_1321779_SNP [dm6]	A	G	1.824e^-4	0.746	DOWNSTREAM CG9184 INTRON Myo61F
2L	16656659	2L_16656659_SNP [dm3] 2L_16656659_SNP [dm6]	C	G	1.825e^-4	0.746	UPSTREAM CG42389 INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Ubx
3L	17617981	3L_17617981_SNP [dm3] 3L_17624881_SNP [dm6]	A	G	1.832e^-4	0.746	INTRON CG7510
2L	14154623	2L_14154623_DEL [dm3] 2L_14154623_DEL [dm6]	GG	G	1.836e^-4	0.746	INTRON CG17341
3L	11176561	3L_11176561_SNP [dm3] 3L_11183461_SNP [dm6]	C	T	1.838e^-4	0.746	INTRON GlcAT-P
3R	20494763	3R_20494763_SNP [dm3] 3R_24669041_SNP [dm6]	C	T	1.840e^-4	0.746	INTRON slo	regulatory region REDfly_CRMs
X	3546939	X_3546939_SNP [dm3] X_3652906_SNP [dm6]	C	T	1.846e^-4	0.746	INTRON AstA-R1
X	7244945	X_7244945_SNP [dm3] X_7350912_SNP [dm6]	A	G	1.852e^-4	0.746	INTRON CR44357 & 1 other
3L	4873060	3L_4873060_SNP [dm3] 3L_4873060_SNP [dm6]	T	G	1.854e^-4	0.746	INTRON CG17150	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9279998	2L_9279998_SNP [dm3] 2L_9279998_SNP [dm6]	G	T	1.860e^-4	0.746	INTRON Ggamma30A
X	10537875	X_10537875_SNP [dm3] X_10643842_SNP [dm6]	T	C	1.865e^-4	0.746	INTRON X11Lbeta
2L	4500783	2L_4500783_SNP [dm3] 2L_4500783_SNP [dm6]	G	A	1.865e^-4	0.746	SYNONYMOUS_CODING dp INTRON dp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19654909	2R_19654909_SNP [dm3] 2R_23767386_SNP [dm6]	T	C	1.869e^-4	0.746	SYNONYMOUS_CODING CG9850
2L	4907084	2L_4907084_INS [dm3] 2L_4907084_INS [dm6]	CTG	AATAA	1.869e^-4	0.746	UPSTREAM CG2837 INTERGENIC
2L	359512	2L_359512_SNP [dm3] 2L_359512_SNP [dm6]	G	A	1.871e^-4	0.746	INTERGENIC
2L	2267763	2L_2267763_SNP [dm3] 2L_2267763_SNP [dm6]	T	G	1.871e^-4	0.746	DOWNSTREAM CG17242 INTERGENIC
2R	1567000	2R_1567000_SNP [dm3] 2R_5679495_SNP [dm6]	A	G	1.871e^-4	0.746	SPLICE_SITE_REGION scaf SYNONYMOUS_CODING scaf	TF binding site mE1_TFBS_cad
X	19301895	X_19301895_SNP [dm3] X_19407862_SNP [dm6]	C	G	1.884e^-4	0.746	INTRON kek5
3L	5917012	3L_5917012_SNP [dm3] 3L_5923912_SNP [dm6]	T	C	1.886e^-4	0.746	UTR_5_PRIME Vap-33B DOWNSTREAM CG32407	TF binding site mE1_TFBS_cad
2L	16827077	2L_16827077_SNP [dm3] 2L_16827077_SNP [dm6]	G	A	1.887e^-4	0.746	UPSTREAM CG31739 DOWNSTREAM mdy INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2660554	3L_2660554_SNP [dm3] 3L_2660554_SNP [dm6]	C	T	1.892e^-4	0.746	SYNONYMOUS_CODING CG33233 UTR_3_PRIME CG33233 INTRON Fife
3R	22523315	3R_22523315_SNP [dm3] 3R_26697593_SNP [dm6]	T	C	1.897e^-4	0.746	DOWNSTREAM amon INTERGENIC
2R	7286728	2R_7286728_SNP [dm3] 2R_11399223_SNP [dm6]	G	A	1.899e^-4	0.746	DOWNSTREAM tRNA:CR30506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	7595209	X_7595209_SNP [dm3] X_7701176_SNP [dm6]	A	T	1.901e^-4	0.746	INTRON CHES-1-like
3R	23329078	3R_23329078_SNP [dm3] 3R_27503356_SNP [dm6]	T	A	1.908e^-4	0.746	UPSTREAM CG5402 INTERGENIC
2L	4907082	2L_4907082_SNP [dm3] 2L_4907082_SNP [dm6]	T	C	1.909e^-4	0.746	UPSTREAM CG2837 INTERGENIC
X	3615106	X_3615106_SNP [dm3] X_3721073_SNP [dm6]	A	G	1.914e^-4	0.746	INTRON tlk	TF binding site BDTNP1_TFBS_dl
3R	25807156	3R_25807156_SNP [dm3] 3R_29981434_SNP [dm6]	A	T	1.929e^-4	0.746	INTERGENIC
3L	1320779	3L_1320779_SNP [dm3] 3L_1320779_SNP [dm6]	T	A	1.940e^-4	0.746	UPSTREAM Myo61F INTRON Myo61F
4	1165159	4_1165159_SNP [dm3] 4_1144533_SNP [dm6]	A	T	1.941e^-4	0.746	INTRON CG32017
X	5177443	X_5177443_SNP [dm3] X_5283410_SNP [dm6]	A	G	1.946e^-4	0.746	INTERGENIC
X	7147085	X_7147085_INS [dm3] X_7253052_INS [dm6]	A	AT	1.946e^-4	0.746	INTRON CR44357	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
4	1209305	4_1209305_SNP [dm3] 4_1188679_SNP [dm6]	T	A	1.946e^-4	0.746	INTRON CG33521
3L	1321740	3L_1321740_SNP [dm3] 3L_1321740_SNP [dm6]	G	A	1.949e^-4	0.746	DOWNSTREAM CG9184 INTRON Myo61F
2L	3829840	2L_3829840_SNP [dm3] 2L_3829840_SNP [dm6]	C	G	1.960e^-4	0.746	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7088087	2R_7088087_SNP [dm3] 2R_11200582_SNP [dm6]	G	C	1.960e^-4	0.746	INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	3991401	3L_3991401_SNP [dm3] 3L_3991401_SNP [dm6]	C	A	1.961e^-4	0.746	UTR_3_PRIME scrt
X	8288266	X_8288266_SNP [dm3] X_8394233_SNP [dm6]	A	C	1.962e^-4	0.746	INTERGENIC
2L	6720414	2L_6720414_SNP [dm3] 2L_6720414_SNP [dm6]	A	T	1.965e^-4	0.746	UTR_3_PRIME homer
3L	3367437	3L_3367437_SNP [dm3] 3L_3367437_SNP [dm6]	T	C	1.967e^-4	0.746	INTRON kst
2R	17734882	2R_17734882_SNP [dm3] 2R_21847377_SNP [dm6]	G	T	1.967e^-4	0.746	INTERGENIC
3L	12411288	3L_12411288_SNP [dm3] 3L_12418188_SNP [dm6]	G	C	1.975e^-4	0.746	UPSTREAM ArfGAP1 INTERGENIC	TF binding site mE1_TFBS_cnc
3L	10886014	3L_10886014_SNP [dm3] 3L_10892914_SNP [dm6]	T	G	1.977e^-4	0.746	DOWNSTREAM Cpr67Fa2 & 1 other INTERGENIC
2R	3524536	2R_3524536_SNP [dm3] 2R_7637031_SNP [dm6]	T	C	1.980e^-4	0.746	UTR_5_PRIME CG43340 UPSTREAM CG43340 INTRON CG43340
2L	16661367	2L_16661367_SNP [dm3] 2L_16661367_SNP [dm6]	G	A	1.988e^-4	0.746	SYNONYMOUS_CODING CG42389	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6248424	3R_6248424_SNP [dm3] 3R_10422702_SNP [dm6]	C	T	1.988e^-4	0.746	INTERGENIC
2L	18415733	2L_18415733_SNP [dm3] 2L_18415733_SNP [dm6]	A	T	1.992e^-4	0.746	INTERGENIC
3R	25470035	3R_25470035_INS [dm3] 3R_29644313_INS [dm6]	T	TAACTCATTT	1.992e^-4	0.746	INTRON Dop1R2
X	8297418	X_8297418_SNP [dm3] X_8403385_SNP [dm6]	T	A	1.993e^-4	0.746	UTR_3_PRIME CG10555	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26932750	3R_26932750_SNP [dm3] 3R_31107028_SNP [dm6]	G	A	1.997e^-4	0.746	SYNONYMOUS_CODING CG11318
2L	17863774	2L_17863774_SNP [dm3] 2L_17863774_SNP [dm6]	C	A	1.999e^-4	0.746	INTRON CadN2
X	7588311	X_7588311_SNP [dm3] X_7694278_SNP [dm6]	A	C	2.000e^-4	0.746	INTRON CHES-1-like	TF binding site mE1_TFBS_Trl
3R	20501278	3R_20501278_SNP [dm3] 3R_24675556_SNP [dm6]	A	T	2.002e^-4	0.746	INTRON slo
2L	16669693	2L_16669693_SNP [dm3] 2L_16669693_SNP [dm6]	A	C	2.006e^-4	0.746	INTRON Trpgamma
2L	2267765	2L_2267765_SNP [dm3] 2L_2267765_SNP [dm6]	A	G	2.014e^-4	0.746	DOWNSTREAM CG17242 INTERGENIC
X	16757986	X_16757986_SNP [dm3] X_16863953_SNP [dm6]	T	A	2.015e^-4	0.746	INTRON CG13003
2R	3518999	2R_3518999_SNP [dm3] 2R_7631494_SNP [dm6]	G	T	2.016e^-4	0.746	DOWNSTREAM CR45131 INTRON CG43340
3R	25803942	3R_25803942_SNP [dm3] 3R_29978220_SNP [dm6]	T	G	2.017e^-4	0.746	INTERGENIC
2L	17640273	2L_17640273_SNP [dm3] 2L_17640273_SNP [dm6]	G	A	2.018e^-4	0.746	INTERGENIC
2L	17840400	2L_17840400_SNP [dm3] 2L_17840400_SNP [dm6]	T	A	2.020e^-4	0.746	INTRON CadN2
2R	8925239	2R_8925239_SNP [dm3] 2R_13037734_SNP [dm6]	G	A	2.022e^-4	0.746	INTERGENIC
2R	10456295	2R_10456295_SNP [dm3] 2R_14568790_SNP [dm6]	C	T	2.023e^-4	0.746	INTRON ttv	TF binding site mE1_TFBS_sbb
3R	13804061	3R_13804061_SNP [dm3] 3R_17978339_SNP [dm6]	A	C	2.025e^-4	0.746	INTRON cpo
2R	775577	2R_775577_SNP [dm3] 2R_4888072_SNP [dm6]	G	A	2.032e^-4	0.746	INTERGENIC	transposable element FlyBase
2R	3913520	2R_3913520_MNP [dm3] 2R_8026015_MNP [dm6]	CTC	TCT	2.033e^-4	0.746	EXON CR45267
2L	6532875	2L_6532875_INS [dm3] 2L_6532875_INS [dm6]	T	TAT	2.033e^-4	0.746	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10537238	X_10537238_SNP [dm3] X_10643205_SNP [dm6]	A	G	2.037e^-4	0.746	INTRON X11Lbeta
2L	16656208	2L_16656208_SNP [dm3] 2L_16656208_SNP [dm6]	A	T	2.048e^-4	0.746	UPSTREAM CG42389 INTRON CG42389
2R	17376300	2R_17376300_SNP [dm3] 2R_21488795_SNP [dm6]	C	T	2.048e^-4	0.746	INTRON Fkbp14
2R	4706507	2R_4706507_SNP [dm3] 2R_8819002_SNP [dm6]	A	G	2.054e^-4	0.746	INTRON sns	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4811104	2L_4811104_SNP [dm3] 2L_4811104_SNP [dm6]	G	C	2.057e^-4	0.746	DOWNSTREAM CR45297 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	4384765	2L_4384765_SNP [dm3] 2L_4384765_SNP [dm6]	T	G	2.058e^-4	0.746	SYNONYMOUS_CODING CG3338	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	18375542	2L_18375542_SNP [dm3] 2L_18375542_SNP [dm6]	T	C	2.069e^-4	0.746	INTRON Fas3
3R	25220787	3R_25220787_SNP [dm3] 3R_29395065_SNP [dm6]	C	G	2.074e^-4	0.746	INTRON Ptp99A
X	18875954	X_18875954_SNP [dm3] X_18981921_SNP [dm6]	T	A	2.079e^-4	0.746	INTRON CG43759
2L	6525528	2L_6525528_SNP [dm3] 2L_6525528_SNP [dm6]	C	G	2.079e^-4	0.746	NON_SYNONYMOUS_CODING CG31637
3R	26272264	3R_26272264_SNP [dm3] 3R_30446542_SNP [dm6]	A	T	2.079e^-4	0.746	INTRON aralar1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15670105	3R_15670105_SNP [dm3] 3R_19844383_SNP [dm6]	C	A	2.079e^-4	0.746	INTERGENIC
2L	21806726	2L_21806726_SNP [dm3] 2L_21806726_SNP [dm6]	A	G	2.081e^-4	0.746	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	8623345	3R_8623345_SNP [dm3] 3R_12797623_SNP [dm6]	C	A	2.081e^-4	0.746	INTERGENIC
2R	6040376	2R_6040376_SNP [dm3] 2R_10152871_SNP [dm6]	C	A	2.083e^-4	0.746	SPLICE_SITE_REGION CR45133 UPSTREAM CR45133 INTRON KCNQ & 1 other
X	8142664	X_8142664_SNP [dm3] X_8248631_SNP [dm6]	G	A	2.093e^-4	0.746	DOWNSTREAM ND75 & 1 other INTERGENIC
2R	7286655	2R_7286655_SNP [dm3] 2R_11399150_SNP [dm6]	T	C	2.099e^-4	0.746	DOWNSTREAM tRNA:CR30506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4387371	2L_4387371_SNP [dm3] 2L_4387371_SNP [dm6]	G	A	2.110e^-4	0.746	UPSTREAM Psf2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	775588	2R_775588_SNP [dm3] 2R_4888083_SNP [dm6]	G	T	2.115e^-4	0.746	INTERGENIC	transposable element FlyBase
X	2627927	X_2627927_SNP [dm3] X_2733894_SNP [dm6]	T	C	2.126e^-4	0.746	SYNONYMOUS_CODING CG2712 DOWNSTREAM crm	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16547812	X_16547812_SNP [dm3] X_16653779_SNP [dm6]	T	C	2.126e^-4	0.746	NON_SYNONYMOUS_CODING CG9723 DOWNSTREAM CG32573 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	976879	3L_976879_SNP [dm3] 3L_976879_SNP [dm6]	T	C	2.126e^-4	0.746	INTRON Glut1
2L	6490143	2L_6490143_SNP [dm3] 2L_6490143_SNP [dm6]	A	T	2.129e^-4	0.746	UTR_3_PRIME epsilonCOP UPSTREAM CG31638 DOWNSTREAM CG9548	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	6490158	2L_6490158_SNP [dm3] 2L_6490158_SNP [dm6]	C	T	2.129e^-4	0.746	UTR_3_PRIME epsilonCOP & 1 other UPSTREAM CG31638	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	5446823	2L_5446823_SNP [dm3] 2L_5446823_SNP [dm6]	A	G	2.131e^-4	0.746	INTERGENIC
2R	8767091	2R_8767091_SNP [dm3] 2R_12879586_SNP [dm6]	C	A	2.138e^-4	0.746	UTR_5_PRIME Nmda1 UPSTREAM Nmda1 & 1 other INTRON Aats-asp & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	5727434	3R_5727434_DEL [dm3] 3R_9901712_DEL [dm6]	TGT	T	2.143e^-4	0.746	INTRON Glut4EF
4	1196162	4_1196162_SNP [dm3] 4_1175536_SNP [dm6]	C	G	2.147e^-4	0.746	INTRON pho	transposable element FlyBase
3R	26980807	3R_26980807_SNP [dm3] 3R_31155085_SNP [dm6]	T	C	2.155e^-4	0.746	INTRON Gycbeta100B
2L	12977243	2L_12977243_SNP [dm3] 2L_12977243_SNP [dm6]	C	T	2.157e^-4	0.746	SYNONYMOUS_CODING Vha68-2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	2005343	X_2005343_SNP [dm3] X_2111310_SNP [dm6]	G	A	2.159e^-4	0.746	SYNONYMOUS_CODING csw	TF binding site mE1_TFBS_chinmo
2L	13046599	2L_13046599_SNP [dm3] 2L_13046599_SNP [dm6]	A	T	2.167e^-4	0.746	INTRON CG9932
3L	4737656	3L_4737656_SNP [dm3] 3L_4737656_SNP [dm6]	G	A	2.169e^-4	0.746	INTRON RhoGEF64C
3R	25832673	3R_25832673_SNP [dm3] 3R_30006951_SNP [dm6]	T	C	2.170e^-4	0.746	SYNONYMOUS_CODING CG7912 INTRON Nlp	TF binding site mE1_TFBS_sens
X	15578577	X_15578577_SNP [dm3] X_15684544_SNP [dm6]	C	T	2.171e^-4	0.746	DOWNSTREAM CG15599 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	17548347	2L_17548347_SNP [dm3] 2L_17548347_SNP [dm6]	A	T	2.172e^-4	0.746	DOWNSTREAM CR45697 INTERGENIC
3R	24480194	3R_24480194_SNP [dm3] 3R_28654472_SNP [dm6]	A	G	2.175e^-4	0.746	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2R	4074279	2R_4074279_INS [dm3] 2R_8186774_INS [dm6]	A	TT	2.178e^-4	0.746	INTRON LRP1
X	2627861	X_2627861_SNP [dm3] X_2733828_SNP [dm6]	A	C	2.179e^-4	0.746	SYNONYMOUS_CODING CG2712 DOWNSTREAM crm	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	3913258	2R_3913258_SNP [dm3] 2R_8025753_SNP [dm6]	T	C	2.179e^-4	0.746	EXON CR45267
X	19786703	X_19786703_SNP [dm3] X_19892670_SNP [dm6]	T	A	2.180e^-4	0.746	INTRON Hers
3R	2904510	3R_2904510_INS [dm3] 3R_7078788_INS [dm6]	T	TTCATT	2.181e^-4	0.746	DOWNSTREAM CG1943 INTRON Ref1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	4134190	2L_4134190_SNP [dm3] 2L_4134190_SNP [dm6]	A	G	2.186e^-4	0.746	INTERGENIC
2L	8487452	2L_8487452_SNP [dm3] 2L_8487452_SNP [dm6]	G	C	2.195e^-4	0.746	NON_SYNONYMOUS_CODING d	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4462607	2L_4462607_DEL [dm3] 2L_4462607_DEL [dm6]	AGGGTGC	A	2.197e^-4	0.746	UPSTREAM CG15436 DOWNSTREAM CG15435 INTRON CG15443	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
X	18593948	X_18593948_DEL [dm3] X_18699915_DEL [dm6]	ATGGGTAGAA	A	2.200e^-4	0.746	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	25804721	3R_25804721_SNP [dm3] 3R_29978999_SNP [dm6]	C	G	2.203e^-4	0.746	INTERGENIC
3L	10689918	3L_10689918_SNP [dm3] 3L_10696818_SNP [dm6]	G	T	2.204e^-4	0.746	UTR_5_PRIME NijA
3R	2615728	3R_2615728_SNP [dm3] 3R_6790006_SNP [dm6]	T	C	2.210e^-4	0.746	INTERGENIC
2L	11981831	2L_11981831_SNP [dm3] 2L_11981831_SNP [dm6]	C	T	2.215e^-4	0.746	INTRON CG16965
2R	15015534	2R_15015534_SNP [dm3] 2R_19128029_SNP [dm6]	G	T	2.215e^-4	0.746	UPSTREAM CG15117 INTRON CG15117
2L	8770486	2L_8770486_SNP [dm3] 2L_8770486_SNP [dm6]	G	A	2.226e^-4	0.748	SYNONYMOUS_CODING CG9465	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	701702	3L_701702_SNP [dm3] 3L_701702_SNP [dm6]	G	T	2.235e^-4	0.75	INTERGENIC
X	13987960	X_13987960_SNP [dm3] X_14093927_SNP [dm6]	A	C	2.245e^-4	0.75	INTERGENIC
3R	1923723	3R_1923723_INS [dm3] 3R_6098001_INS [dm6]	A	ATCCGTAGTTAGATGCGAAA...	2.253e^-4	0.75	INTRON Gasp
4	970711	4_970711_SNP [dm3] 4_950085_SNP [dm6]	C	T	2.255e^-4	0.75	DOWNSTREAM mGluR INTERGENIC	transposable element FlyBase
2R	16564119	2R_16564119_INS [dm3] 2R_20676614_INS [dm6]	A	AA	2.267e^-4	0.75	INTERGENIC
3L	3160305	3L_3160305_SNP [dm3] 3L_3160305_SNP [dm6]	A	G	2.274e^-4	0.75	SYNONYMOUS_CODING pfk UPSTREAM NDUFS3	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	16812072	2R_16812072_SNP [dm3] 2R_20924567_SNP [dm6]	T	C	2.280e^-4	0.75	INTRON Rx
2L	9420838	2L_9420838_SNP [dm3] 2L_9420838_SNP [dm6]	G	T	2.288e^-4	0.75	SYNONYMOUS_CODING Mco1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8913719	2R_8913719_SNP [dm3] 2R_13026214_SNP [dm6]	C	T	2.292e^-4	0.75	INTERGENIC
3L	12742171	3L_12742171_SNP [dm3] 3L_12749071_SNP [dm6]	T	G	2.293e^-4	0.75	UPSTREAM Klc INTRON Klc
2R	16934784	2R_16934784_SNP [dm3] 2R_21047279_SNP [dm6]	G	T	2.295e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	6455315	X_6455315_SNP [dm3] X_6561282_SNP [dm6]	A	C	2.296e^-4	0.75	SYNONYMOUS_CODING CG34417
2R	9870771	2R_9870771_SNP [dm3] 2R_13983266_SNP [dm6]	C	T	2.298e^-4	0.75	UTR_5_PRIME Ctf4 UPSTREAM CG8067	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2R	18714698	2R_18714698_SNP [dm3] 2R_22827175_SNP [dm6]	C	A	2.305e^-4	0.75	INTRON CG42284 & 1 other
2L	17863230	2L_17863230_SNP [dm3] 2L_17863230_SNP [dm6]	C	G	2.311e^-4	0.75	INTRON CadN2
2R	18025657	2R_18025657_SNP [dm3] 2R_22138152_SNP [dm6]	A	G	2.316e^-4	0.75	START_GAINED a UTR_5_PRIME a UPSTREAM CG11269
2R	18712380	2R_18712380_SNP [dm3] 2R_22824857_SNP [dm6]	C	A	2.318e^-4	0.75	UPSTREAM CG30274 & 1 other INTRON CG42284
3R	10407209	3R_10407209_SNP [dm3] 3R_14581487_SNP [dm6]	G	T	2.319e^-4	0.75	INTRON stumps
2L	308744	2L_308744_SNP [dm3] 2L_308744_SNP [dm6]	G	A	2.326e^-4	0.75	INTRON Plc21C EXON CR43719
2R	9913951	2R_9913951_SNP [dm3] 2R_14026446_SNP [dm6]	T	A	2.330e^-4	0.75	INTRON mam
2L	6490121	2L_6490121_SNP [dm3] 2L_6490121_SNP [dm6]	A	G	2.333e^-4	0.75	UTR_3_PRIME epsilonCOP UPSTREAM CG31638 DOWNSTREAM CG9548	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	2092161	2L_2092161_SNP [dm3] 2L_2092161_SNP [dm6]	T	G	2.338e^-4	0.75	INTRON dpr3
2L	10088546	2L_10088546_SNP [dm3] 2L_10088546_SNP [dm6]	T	C	2.339e^-4	0.75	INTRON CG44153	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7517677	X_7517677_SNP [dm3] X_7623644_SNP [dm6]	C	T	2.339e^-4	0.75	INTRON ct	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4502788	2L_4502788_SNP [dm3] 2L_4502788_SNP [dm6]	G	C	2.339e^-4	0.75	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	16655323	2L_16655323_SNP [dm3] 2L_16655323_SNP [dm6]	G	C	2.343e^-4	0.75	INTRON CG42389
3L	2260325	3L_2260325_SNP [dm3] 3L_2260325_SNP [dm6]	G	A	2.349e^-4	0.75	SYNONYMOUS_CODING oxt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	7819338	X_7819338_SNP [dm3] X_7925305_SNP [dm6]	A	G	2.356e^-4	0.75	UTR_3_PRIME CG10777	TF binding site mE1_TFBS_h mE1_TFBS_HSA
X	9735242	X_9735242_INS [dm3] X_9841209_INS [dm6]	G	GAATTTAG	2.356e^-4	0.75	INTRON CG32698
2L	17895434	2L_17895434_SNP [dm3] 2L_17895434_SNP [dm6]	A	G	2.356e^-4	0.75	DOWNSTREAM CR43420 INTERGENIC
2R	16666136	2R_16666136_SNP [dm3] 2R_20778631_SNP [dm6]	T	C	2.367e^-4	0.75	NON_SYNONYMOUS_CODING CG43711 UPSTREAM CG43710
2L	7387541	2L_7387541_SNP [dm3] 2L_7387541_SNP [dm6]	A	T	2.377e^-4	0.75	UPSTREAM gudu INTRON CG5149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2416414	3L_2416414_SNP [dm3] 3L_2416414_SNP [dm6]	C	T	2.381e^-4	0.75	INTRON CG45186
3L	11433280	3L_11433280_SNP [dm3] 3L_11440180_SNP [dm6]	T	C	2.388e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9931625	3L_9931625_SNP [dm3] 3L_9938525_SNP [dm6]	C	A	2.394e^-4	0.75	INTRON CG34356
4	1083551	4_1083551_SNP [dm3] 4_1062925_SNP [dm6]	C	T	2.397e^-4	0.75	INTRON Zyx & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	11803667	3L_11803667_SNP [dm3] 3L_11810567_SNP [dm6]	C	A	2.409e^-4	0.75	INTRON CG42255
3L	17750915	3L_17750915_SNP [dm3] 3L_17757815_SNP [dm6]	A	T	2.410e^-4	0.75	UPSTREAM Msi & 1 other INTRON Adgf-A & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	2093355	X_2093355_SNP [dm3] X_2199322_SNP [dm6]	A	C	2.413e^-4	0.75	INTRON Mct1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4554214	2L_4554214_SNP [dm3] 2L_4554214_SNP [dm6]	G	A	2.415e^-4	0.75	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9567598	3L_9567598_SNP [dm3] 3L_9574498_SNP [dm6]	C	T	2.420e^-4	0.75	INTRON CG42673
3L	6564341	3L_6564341_SNP [dm3] 3L_6571241_SNP [dm6]	C	G	2.427e^-4	0.75	INTRON CG18769 & 1 other
2R	16553234	2R_16553234_DEL [dm3] 2R_20665729_DEL [dm6]	AT	C	2.428e^-4	0.75	UPSTREAM Fem-1 INTRON Fem-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	4514023	2L_4514023_SNP [dm3] 2L_4514023_SNP [dm6]	C	T	2.429e^-4	0.75	INTRON dp
2L	15998203	2L_15998203_SNP [dm3] 2L_15998203_SNP [dm6]	A	C	2.439e^-4	0.75	INTERGENIC
2L	6062526	2L_6062526_SNP [dm3] 2L_6062526_SNP [dm6]	C	T	2.439e^-4	0.75	UPSTREAM CG13994 INTRON CG9140	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	3754569	3L_3754569_SNP [dm3] 3L_3754569_SNP [dm6]	G	C	2.442e^-4	0.75	NON_SYNONYMOUS_CODING ppk27 INTRON CG32264
3R	23992220	3R_23992220_SNP [dm3] 3R_28166498_SNP [dm6]	A	G	2.449e^-4	0.75	INTRON CG34354
3R	20027871	3R_20027871_INS [dm3] 3R_24202149_INS [dm6]	A	AT	2.480e^-4	0.75	INTRON twin
2L	17863652	2L_17863652_SNP [dm3] 2L_17863652_SNP [dm6]	T	A	2.487e^-4	0.75	INTRON CadN2
2L	7500206	2L_7500206_SNP [dm3] 2L_7500206_SNP [dm6]	G	T	2.489e^-4	0.75	SYNONYMOUS_CODING RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	4514307	2L_4514307_DEL [dm3] 2L_4514307_DEL [dm6]	GG	G	2.489e^-4	0.75	INTRON dp
2R	14897950	2R_14897950_SNP [dm3] 2R_19010445_SNP [dm6]	G	A	2.494e^-4	0.75	INTERGENIC
3R	12210089	3R_12210089_SNP [dm3] 3R_16384367_SNP [dm6]	C	T	2.495e^-4	0.75	INTRON ss	regulatory region REDfly_CRMs
2L	3375720	2L_3375720_SNP [dm3] 2L_3375720_SNP [dm6]	T	C	2.495e^-4	0.75	UPSTREAM CG15412 DOWNSTREAM CG9662 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	21322925	X_21322925_SNP [dm3] X_21451898_SNP [dm6]	T	C	2.495e^-4	0.75	INTRON CG42343
3R	23313760	3R_23313760_SNP [dm3] 3R_27488038_SNP [dm6]	A	G	2.496e^-4	0.75	START_GAINED Gr98a UTR_5_PRIME Gr98a
2R	14569640	2R_14569640_SNP [dm3] 2R_18682135_SNP [dm6]	A	T	2.504e^-4	0.75	SYNONYMOUS_CODING CG44434 UTR_5_PRIME CG44435 UPSTREAM CG44435	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	12300310	2L_12300310_SNP [dm3] 2L_12300310_SNP [dm6]	A	T	2.505e^-4	0.75	INTRON aret
2L	17863743	2L_17863743_SNP [dm3] 2L_17863743_SNP [dm6]	C	A	2.508e^-4	0.75	INTRON CadN2
3L	701711	3L_701711_SNP [dm3] 3L_701711_SNP [dm6]	T	A	2.520e^-4	0.75	INTERGENIC
3L	701713	3L_701713_INS [dm3] 3L_701713_INS [dm6]	G	GG	2.520e^-4	0.75	INTERGENIC
3L	701719	3L_701719_SNP [dm3] 3L_701719_SNP [dm6]	C	A	2.520e^-4	0.75	INTERGENIC
X	5855639	X_5855639_SNP [dm3] X_5961606_SNP [dm6]	T	A	2.525e^-4	0.75	SYNONYMOUS_CODING fs_1_M3
2L	16704468	2L_16704468_SNP [dm3] 2L_16704468_SNP [dm6]	T	A	2.529e^-4	0.75	UTR_3_PRIME CG31808	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
3R	4375176	3R_4375176_SNP [dm3] 3R_8549454_SNP [dm6]	C	A	2.529e^-4	0.75	INTERGENIC
3L	13688250	3L_13688250_SNP [dm3] 3L_13695150_SNP [dm6]	C	T	2.529e^-4	0.75	INTRON bru-3
2R	9869238	2R_9869238_SNP [dm3] 2R_13981733_SNP [dm6]	T	A	2.530e^-4	0.75	SYNONYMOUS_CODING Ctf4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	7582077	X_7582077_SNP [dm3] X_7688044_SNP [dm6]	A	G	2.533e^-4	0.75	SYNONYMOUS_CODING CHES-1-like
2R	9456581	2R_9456581_SNP [dm3] 2R_13569076_SNP [dm6]	T	C	2.544e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_ttk mE1_TFBS_zfh1
3L	680852	3L_680852_SNP [dm3] 3L_680852_SNP [dm6]	A	T	2.549e^-4	0.75	UTR_3_PRIME CG3386 UPSTREAM CG17129	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad
4	1140020	4_1140020_SNP [dm3] 4_1119394_SNP [dm6]	T	C	2.552e^-4	0.75	INTRON Cals	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
3L	1357554	3L_1357554_SNP [dm3] 3L_1357554_SNP [dm6]	A	T	2.561e^-4	0.75	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	12210079	3R_12210079_SNP [dm3] 3R_16384357_SNP [dm6]	T	A	2.566e^-4	0.75	INTRON ss	regulatory region REDfly_CRMs
3L	3866324	3L_3866324_SNP [dm3] 3L_3866324_SNP [dm6]	C	T	2.566e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	2627858	X_2627858_SNP [dm3] X_2733825_SNP [dm6]	A	G	2.567e^-4	0.75	SYNONYMOUS_CODING CG2712 DOWNSTREAM crm	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	20786592	3R_20786592_SNP [dm3] 3R_24960870_SNP [dm6]	C	T	2.572e^-4	0.75	INTERGENIC
3L	11331657	3L_11331657_SNP [dm3] 3L_11338557_SNP [dm6]	A	C	2.573e^-4	0.75	INTERGENIC
3L	14734600	3L_14734600_SNP [dm3] 3L_14741500_SNP [dm6]	C	T	2.573e^-4	0.75	INTRON ome
2L	10931589	2L_10931589_SNP [dm3] 2L_10931589_SNP [dm6]	T	A	2.583e^-4	0.75	INTRON dpr2
X	20430394	X_20430394_SNP [dm3] X_20559367_SNP [dm6]	C	A	2.585e^-4	0.75	INTRON RunxB
2L	8770469	2L_8770469_SNP [dm3] 2L_8770469_SNP [dm6]	T	A	2.589e^-4	0.75	NON_SYNONYMOUS_CODING CG9465	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11169198	3L_11169198_SNP [dm3] 3L_11176098_SNP [dm6]	T	C	2.592e^-4	0.75	UTR_3_PRIME CG14142 DOWNSTREAM GlcAT-P
3R	20494760	3R_20494760_SNP [dm3] 3R_24669038_SNP [dm6]	A	T	2.595e^-4	0.75	INTRON slo	regulatory region REDfly_CRMs
3R	21086905	3R_21086905_DEL [dm3] 3R_25261183_DEL [dm6]	TGATTAATT	T	2.598e^-4	0.75	UTR_3_PRIME CG10425 DOWNSTREAM CG11857
3L	14363697	3L_14363697_SNP [dm3] 3L_14370597_SNP [dm6]	C	T	2.601e^-4	0.75	UPSTREAM CG13481 INTERGENIC
X	11205139	X_11205139_SNP [dm3] X_11311106_SNP [dm6]	G	T	2.604e^-4	0.75	NON_SYNONYMOUS_CODING Ir10a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25474598	3R_25474598_SNP [dm3] 3R_29648876_SNP [dm6]	G	A	2.617e^-4	0.75	INTRON Dop1R2
3L	10714196	3L_10714196_SNP [dm3] 3L_10721096_SNP [dm6]	T	A	2.618e^-4	0.75	INTERGENIC
3R	23305583	3R_23305583_SNP [dm3] 3R_27479861_SNP [dm6]	C	G	2.620e^-4	0.75	INTRON Cyp6a18
4	896527	4_896527_SNP [dm3] 4_875901_SNP [dm6]	T	C	2.622e^-4	0.75	INTRON unc-13	transposable element FlyBase
2L	1062860	2L_1062860_SNP [dm3] 2L_1062860_SNP [dm6]	C	T	2.624e^-4	0.75	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	20012341	2R_20012341_SNP [dm3] 2R_24124818_SNP [dm6]	G	T	2.625e^-4	0.75	SPLICE_SITE_REGION CG43775 & 2 others UPSTREAM CG43777 INTRON CG43775 & 2 others	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20919249	3R_20919249_SNP [dm3] 3R_25093527_SNP [dm6]	G	A	2.629e^-4	0.75	INTERGENIC
4	1065672	4_1065672_SNP [dm3] 4_1045046_SNP [dm6]	C	G	2.630e^-4	0.75	INTRON CaMKII
3R	971441	3R_971441_SNP [dm3] 3R_5145719_SNP [dm6]	C	T	2.631e^-4	0.75	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	6966549	2R_6966549_SNP [dm3] 2R_11079044_SNP [dm6]	G	T	2.637e^-4	0.75	INTRON luna	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16707783	2L_16707783_SNP [dm3] 2L_16707783_SNP [dm6]	C	A	2.642e^-4	0.75	INTRON CG31808
2R	9922169	2R_9922169_SNP [dm3] 2R_14034664_SNP [dm6]	T	C	2.642e^-4	0.75	INTRON mam
2L	8911660	2L_8911660_SNP [dm3] 2L_8911660_SNP [dm6]	A	G	2.650e^-4	0.75	INTRON CG34398	TF binding site mE1_TFBS_HSA
2R	10511672	2R_10511672_SNP [dm3] 2R_14624167_SNP [dm6]	G	A	2.653e^-4	0.75	UPSTREAM snoRNA:Or-CD4 DOWNSTREAM snoRNA:Me28S-A992 & 3 others EXON Uhg5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5073490	X_5073490_SNP [dm3] X_5179457_SNP [dm6]	A	G	2.662e^-4	0.75	DOWNSTREAM CG5062 INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	26612525	3R_26612525_DEL [dm3] 3R_30786803_DEL [dm6]	CGACTCAGAGTC...	C	2.665e^-4	0.75	UTR_3_PRIME zfh1
2L	17863709	2L_17863709_SNP [dm3] 2L_17863709_SNP [dm6]	G	A	2.667e^-4	0.75	INTRON CadN2
3L	5915298	3L_5915298_SNP [dm3] 3L_5922198_SNP [dm6]	T	G	2.668e^-4	0.75	UTR_5_PRIME CG32407 UPSTREAM CG10483 & 1 other	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	2793766	3L_2793766_SNP [dm3] 3L_2793766_SNP [dm6]	T	C	2.671e^-4	0.75	SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8963019	2R_8963019_SNP [dm3] 2R_13075514_SNP [dm6]	C	T	2.672e^-4	0.75	INTRON Drl-2
X	20430395	X_20430395_SNP [dm3] X_20559368_SNP [dm6]	T	A	2.680e^-4	0.75	INTRON RunxB
2L	12060327	2L_12060327_SNP [dm3] 2L_12060327_SNP [dm6]	A	G	2.681e^-4	0.75	NON_SYNONYMOUS_CODING Rab3-GAP
3R	6554357	3R_6554357_SNP [dm3] 3R_10728635_SNP [dm6]	C	A	2.684e^-4	0.75	INTERGENIC
3L	2563282	3L_2563282_SNP [dm3] 3L_2563282_SNP [dm6]	T	A	2.684e^-4	0.75	INTRON msn
3L	13872976	3L_13872976_SNP [dm3] 3L_13879876_SNP [dm6]	A	G	2.690e^-4	0.75	INTRON dysc & 1 other
2L	18113844	2L_18113844_INS [dm3] 2L_18113844_INS [dm6]	G	GG	2.692e^-4	0.75	UPSTREAM CG44476 & 1 other INTERGENIC	transposable element FlyBase
2R	20125108	2R_20125108_SNP [dm3] 2R_24237585_SNP [dm6]	T	G	2.703e^-4	0.75	EXON CR44827
2L	17863735	2L_17863735_DEL [dm3] 2L_17863735_DEL [dm6]	TTGAA	T	2.703e^-4	0.75	INTRON CadN2
3L	6136533	3L_6136533_SNP [dm3] 3L_6143433_SNP [dm6]	T	C	2.706e^-4	0.75	UTR_5_PRIME Lcp65Ad	TF binding site BDTNP1_TFBS_da
3L	17574134	3L_17574134_SNP [dm3] 3L_17581034_SNP [dm6]	G	C	2.709e^-4	0.75	INTRON Eip74EF
4	1017618	4_1017618_SNP [dm3] 4_996992_SNP [dm6]	G	A	2.715e^-4	0.75	INTRON toy	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	16655672	2L_16655672_SNP [dm3] 2L_16655672_SNP [dm6]	T	C	2.715e^-4	0.75	INTRON CG42389
2R	8923224	2R_8923224_SNP [dm3] 2R_13035719_SNP [dm6]	T	C	2.715e^-4	0.75	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	14271319	3R_14271319_SNP [dm3] 3R_18445597_SNP [dm6]	C	T	2.717e^-4	0.75	INTRON fru
2L	16705089	2L_16705089_SNP [dm3] 2L_16705089_SNP [dm6]	C	T	2.721e^-4	0.75	UTR_3_PRIME CG31808
X	15977693	X_15977693_SNP [dm3] X_16083660_SNP [dm6]	T	A	2.723e^-4	0.75	INTRON Tob & 1 other
2R	18714879	2R_18714879_SNP [dm3] 2R_22827356_SNP [dm6]	G	A	2.730e^-4	0.751	INTRON CG30274 & 1 other
2L	10587344	2L_10587344_SNP [dm3] 2L_10587344_SNP [dm6]	T	A	2.735e^-4	0.751	INTRON Trim9
2L	17640282	2L_17640282_SNP [dm3] 2L_17640282_SNP [dm6]	C	T	2.739e^-4	0.751	INTERGENIC
2L	5291757	2L_5291757_SNP [dm3] 2L_5291757_SNP [dm6]	T	C	2.746e^-4	0.752	INTRON vri	TF binding site mE1_TFBS_cad
2R	440468	2R_440468_INS [dm3] 2R_4552963_INS [dm6]	G	GG	2.753e^-4	0.752	INTRON Stlk	transposable element FlyBase
2L	17640267	2L_17640267_SNP [dm3] 2L_17640267_SNP [dm6]	A	T	2.766e^-4	0.752	INTERGENIC
3R	23315516	3R_23315516_SNP [dm3] 3R_27489794_SNP [dm6]	G	A	2.778e^-4	0.752	UTR_3_PRIME Gr98a
3R	9644874	3R_9644874_SNP [dm3] 3R_13819152_SNP [dm6]	T	C	2.782e^-4	0.752	INTERGENIC
2L	12155465	2L_12155465_SNP [dm3] 2L_12155465_SNP [dm6]	T	C	2.789e^-4	0.752	SPLICE_SITE_REGION CG31760 INTRON CG31760	TF binding site mE1_TFBS_HSA
2L	6128408	2L_6128408_SNP [dm3] 2L_6128408_SNP [dm6]	G	C	2.802e^-4	0.752	NON_SYNONYMOUS_CODING tectonic UTR_3_PRIME CG42730 UPSTREAM WDR79	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1038186	3L_1038186_SNP [dm3] 3L_1038186_SNP [dm6]	A	C	2.805e^-4	0.752	UTR_3_PRIME bab1	TF binding site mE1_TFBS_cad
2L	7567530	2L_7567530_SNP [dm3] 2L_7567530_SNP [dm6]	T	A	2.807e^-4	0.752	INTRON RapGAP1
2L	10945098	2L_10945098_SNP [dm3] 2L_10945098_SNP [dm6]	A	G	2.809e^-4	0.752	INTRON dpr2
2R	14949482	2R_14949482_SNP [dm3] 2R_19061977_SNP [dm6]	T	A	2.810e^-4	0.752	DOWNSTREAM CG15109 INTERGENIC
3L	9342338	3L_9342338_SNP [dm3] 3L_9349238_SNP [dm6]	G	T	2.813e^-4	0.752	UPSTREAM PGRP-LF DOWNSTREAM PGRP-LC INTERGENIC
4	890586	4_890586_SNP [dm3] 4_869960_SNP [dm6]	T	A	2.824e^-4	0.752	UTR_3_PRIME unc-13 DOWNSTREAM unc-13 EXON CR43425
2L	14399623	2L_14399623_SNP [dm3] 2L_14399623_SNP [dm6]	A	G	2.828e^-4	0.752	INTRON elB
3R	26075400	3R_26075400_SNP [dm3] 3R_30249678_SNP [dm6]	A	G	2.836e^-4	0.752	NON_SYNONYMOUS_CODING CG34299 UPSTREAM tRNA:CR31023	TF binding site mE1_TFBS_inv
3L	16455303	3L_16455303_SNP [dm3] 3L_16462203_SNP [dm6]	G	A	2.837e^-4	0.752	INTRON CG33158	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	8111870	2L_8111870_SNP [dm3] 2L_8111870_SNP [dm6]	T	C	2.848e^-4	0.752	UTR_3_PRIME Bsg
3R	17931845	3R_17931845_SNP [dm3] 3R_22106123_SNP [dm6]	C	T	2.850e^-4	0.752	DOWNSTREAM CG13407 INTRON CG5778
X	3615107	X_3615107_SNP [dm3] X_3721074_SNP [dm6]	G	A	2.853e^-4	0.752	INTRON tlk	TF binding site BDTNP1_TFBS_dl
2R	16075496	2R_16075496_SNP [dm3] 2R_20187991_SNP [dm6]	C	T	2.869e^-4	0.752	INTERGENIC
2L	4810522	2L_4810522_SNP [dm3] 2L_4810522_SNP [dm6]	C	A	2.871e^-4	0.752	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens
3L	3099166	3L_3099166_SNP [dm3] 3L_3099166_SNP [dm6]	C	T	2.880e^-4	0.752	INTRON Cht7
2L	17581872	2L_17581872_DEL [dm3] 2L_17581872_DEL [dm6]	GTACT	G	2.897e^-4	0.752	INTERGENIC
X	8089175	X_8089175_SNP [dm3] X_8195142_SNP [dm6]	G	C	2.899e^-4	0.752	INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	14206386	3L_14206386_SNP [dm3] 3L_14213286_SNP [dm6]	T	C	2.901e^-4	0.752	INTRON nuf	TF binding site mE1_TFBS_bab1
4	455607	4_455607_SNP [dm3] 4_434981_SNP [dm6]	C	A	2.906e^-4	0.752	INTERGENIC	transposable element FlyBase
X	10544076	X_10544076_SNP [dm3] X_10650043_SNP [dm6]	C	T	2.912e^-4	0.752	INTRON X11Lbeta
2L	4386513	2L_4386513_SNP [dm3] 2L_4386513_SNP [dm6]	G	A	2.912e^-4	0.752	SYNONYMOUS_CODING Psf2 UPSTREAM CG3338	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2L	17969041	2L_17969041_SNP [dm3] 2L_17969041_SNP [dm6]	C	G	2.913e^-4	0.752	NON_SYNONYMOUS_CODING btv INTRON CG5674
2L	3830014	2L_3830014_SNP [dm3] 2L_3830014_SNP [dm6]	A	T	2.913e^-4	0.752	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3929737	2L_3929737_SNP [dm3] 2L_3929737_SNP [dm6]	A	G	2.915e^-4	0.752	INTRON fred
2L	10383769	2L_10383769_SNP [dm3] 2L_10383769_SNP [dm6]	C	T	2.916e^-4	0.752	SYNONYMOUS_CODING CG5096 DOWNSTREAM gny & 1 other
2L	17044315	2L_17044315_INS [dm3] 2L_17044315_INS [dm6]	A	AT	2.918e^-4	0.752	INTERGENIC
3L	1856230	3L_1856230_SNP [dm3] 3L_1856230_SNP [dm6]	A	T	2.922e^-4	0.752	UPSTREAM CG13936 & 1 other INTERGENIC
3L	8728599	3L_8728599_SNP [dm3] 3L_8735499_SNP [dm6]	C	A	2.930e^-4	0.752	INTRON Prm
3R	25823806	3R_25823806_SNP [dm3] 3R_29998084_SNP [dm6]	T	A	2.933e^-4	0.752	UTR_5_PRIME CG11504 UPSTREAM CG15525	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	13564093	3R_13564093_SNP [dm3] 3R_17738371_SNP [dm6]	A	G	2.941e^-4	0.752	UPSTREAM TyrRII INTRON TyrRII
2R	16017605	2R_16017605_SNP [dm3] 2R_20130100_SNP [dm6]	C	T	2.942e^-4	0.752	INTERGENIC
3R	16528675	3R_16528675_SNP [dm3] 3R_20702953_SNP [dm6]	G	A	2.943e^-4	0.752	INTRON Oamb
3R	16528681	3R_16528681_SNP [dm3] 3R_20702959_SNP [dm6]	C	T	2.943e^-4	0.752	INTRON Oamb
3L	489701	3L_489701_SNP [dm3] 3L_489701_SNP [dm6]	G	A	2.947e^-4	0.752	INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	14759979	3R_14759979_SNP [dm3] 3R_18934257_SNP [dm6]	A	C	2.960e^-4	0.752	INTRON CG42613
2R	14949484	2R_14949484_SNP [dm3] 2R_19061979_SNP [dm6]	A	T	2.963e^-4	0.752	DOWNSTREAM CG15109 INTERGENIC
3R	23327697	3R_23327697_SNP [dm3] 3R_27501975_SNP [dm6]	T	A	2.968e^-4	0.752	NON_SYNONYMOUS_CODING CG43139 DOWNSTREAM CG5402
3R	20832496	3R_20832496_SNP [dm3] 3R_25006774_SNP [dm6]	C	T	2.971e^-4	0.752	INTRON tnc
3L	11870757	3L_11870757_SNP [dm3] 3L_11877657_SNP [dm6]	G	A	2.973e^-4	0.752	INTRON CG44837
2L	15090821	2L_15090821_SNP [dm3] 2L_15090821_SNP [dm6]	C	A	2.996e^-4	0.752	INTRON CG15270
X	20484555	X_20484555_SNP [dm3] X_20613528_SNP [dm6]	C	T	3.003e^-4	0.752	INTRON RunxA
3L	16091882	3L_16091882_SNP [dm3] 3L_16098782_SNP [dm6]	G	A	3.007e^-4	0.752	SYNONYMOUS_CODING ms_3_72Dt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13513465	3R_13513465_SNP [dm3] 3R_17687743_SNP [dm6]	C	T	3.007e^-4	0.752	UPSTREAM CG31249 DOWNSTREAM osa INTERGENIC
3R	4351310	3R_4351310_SNP [dm3] 3R_8525588_SNP [dm6]	A	T	3.014e^-4	0.752	INTRON CG31259
2R	11457580	2R_11457580_SNP [dm3] 2R_15570075_SNP [dm6]	T	C	3.028e^-4	0.752	UTR_3_PRIME Cdk5 UPSTREAM Flo1 INTRON CG30466	TF binding site BDTNP1_TFBS_dl
4	443113	4_443113_SNP [dm3] 4_422487_SNP [dm6]	G	T	3.030e^-4	0.752	INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
2L	2578384	2L_2578384_SNP [dm3] 2L_2578384_SNP [dm6]	A	T	3.034e^-4	0.752	NON_SYNONYMOUS_CODING Elba2 DOWNSTREAM CG3214	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17376340	2R_17376340_SNP [dm3] 2R_21488835_SNP [dm6]	G	A	3.036e^-4	0.752	INTRON Fkbp14
2L	3267116	2L_3267116_SNP [dm3] 2L_3267116_SNP [dm6]	A	T	3.042e^-4	0.752	INTERGENIC
3L	14206388	3L_14206388_SNP [dm3] 3L_14213288_SNP [dm6]	T	C	3.049e^-4	0.752	INTRON nuf	TF binding site mE1_TFBS_bab1
3R	16528974	3R_16528974_SNP [dm3] 3R_20703252_SNP [dm6]	T	A	3.054e^-4	0.752	INTRON Oamb
3R	10174418	3R_10174418_SNP [dm3] 3R_14348696_SNP [dm6]	T	C	3.054e^-4	0.752	INTRON NK7.1
3R	20837818	3R_20837818_SNP [dm3] 3R_25012096_SNP [dm6]	A	C	3.054e^-4	0.752	INTRON tnc	TF binding site mE1_TFBS_inv
3L	14095008	3L_14095008_SNP [dm3] 3L_14101908_SNP [dm6]	A	T	3.057e^-4	0.752	INTERGENIC
3L	2396369	3L_2396369_SNP [dm3] 3L_2396369_SNP [dm6]	C	T	3.064e^-4	0.752	INTRON CG45186
2R	3165893	2R_3165893_SNP [dm3] 2R_7278388_SNP [dm6]	T	G	3.068e^-4	0.752	UPSTREAM Incenp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	5240997	2L_5240997_SNP [dm3] 2L_5240997_SNP [dm6]	A	C	3.072e^-4	0.752	DOWNSTREAM tRNA:CR31914 & 1 other INTRON tkv	TF binding site BDTNP1_TFBS_da
3L	12127414	3L_12127414_SNP [dm3] 3L_12134314_SNP [dm6]	T	A	3.075e^-4	0.752	NON_SYNONYMOUS_CODING CG5645 DOWNSTREAM CG11534	TF binding site mE1_TFBS_cad
X	11675871	X_11675871_SNP [dm3] X_11781838_SNP [dm6]	C	T	3.077e^-4	0.752	INTERGENIC
3L	2643163	3L_2643163_SNP [dm3] 3L_2643163_SNP [dm6]	C	T	3.078e^-4	0.752	INTRON CG14949
2R	2577229	2R_2577229_SNP [dm3] 2R_6689724_SNP [dm6]	T	A	3.081e^-4	0.752	INTRON CG9422 & 1 other
3R	25230741	3R_25230741_SNP [dm3] 3R_29405019_SNP [dm6]	G	C	3.084e^-4	0.752	INTRON Ptp99A
2L	5504674	2L_5504674_SNP [dm3] 2L_5504674_SNP [dm6]	C	A	3.090e^-4	0.752	INTERGENIC
X	10272520	X_10272520_SNP [dm3] X_10378487_SNP [dm6]	T	C	3.096e^-4	0.752	NON_SYNONYMOUS_CODING CG32681 INTRON CG17841
3L	12306535	3L_12306535_SNP [dm3] 3L_12313435_SNP [dm6]	G	A	3.098e^-4	0.752	INTERGENIC
3L	682639	3L_682639_SNP [dm3] 3L_682639_SNP [dm6]	C	T	3.099e^-4	0.752	UPSTREAM CG3386 DOWNSTREAM ebd1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	16076370	2R_16076370_SNP [dm3] 2R_20188865_SNP [dm6]	C	A	3.100e^-4	0.752	INTERGENIC
X	11355930	X_11355930_DEL [dm3] X_11461897_DEL [dm6]	ACTGAAAAATTAACCCTCCG...	G	3.103e^-4	0.752	INTRON CG43155	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	20030860	X_20030860_SNP [dm3] X_20136827_SNP [dm6]	T	C	3.108e^-4	0.752	NON_SYNONYMOUS_CODING CG15322	TF binding site mE1_TFBS_chinmo
4	657712	4_657712_INS [dm3] 4_637086_INS [dm6]	G	GTAACG	3.111e^-4	0.752	UPSTREAM CR44028 INTRON CG9935	transposable element FlyBase
2R	18714658	2R_18714658_SNP [dm3] 2R_22827135_SNP [dm6]	A	T	3.122e^-4	0.752	INTRON CG42284 & 1 other
2L	12302573	2L_12302573_SNP [dm3] 2L_12302573_SNP [dm6]	T	C	3.126e^-4	0.752	INTRON aret
3R	9867651	3R_9867651_SNP [dm3] 3R_14041929_SNP [dm6]	G	T	3.126e^-4	0.752	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	2041697	3L_2041697_SNP [dm3] 3L_2041697_SNP [dm6]	A	T	3.130e^-4	0.752	INTRON sls
2R	17911887	2R_17911887_INS [dm3] 2R_22024382_INS [dm6]	T	TCT	3.135e^-4	0.752	INTRON CG34370
3R	14675777	3R_14675777_SNP [dm3] 3R_18850055_SNP [dm6]	T	A	3.138e^-4	0.752	UPSTREAM CG18208 DOWNSTREAM CR45633 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	8271967	X_8271967_SNP [dm3] X_8377934_SNP [dm6]	C	T	3.143e^-4	0.752	INTERGENIC
2L	11347119	2L_11347119_SNP [dm3] 2L_11347119_SNP [dm6]	G	T	3.149e^-4	0.752	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16687626	2L_16687626_SNP [dm3] 2L_16687626_SNP [dm6]	C	T	3.152e^-4	0.752	INTRON grp
3L	3480997	3L_3480997_SNP [dm3] 3L_3480997_SNP [dm6]	T	G	3.156e^-4	0.752	INTRON CG42324
X	2009665	X_2009665_INS [dm3] X_2115632_INS [dm6]	T	TTACT	3.157e^-4	0.752	UTR_3_PRIME csw DOWNSTREAM ph-d
2L	11655879	2L_11655879_SNP [dm3] 2L_11655879_SNP [dm6]	T	C	3.163e^-4	0.752	INTERGENIC
3L	5528279	3L_5528279_SNP [dm3] 3L_5535179_SNP [dm6]	C	T	3.166e^-4	0.752	SYNONYMOUS_CODING CG13285
3L	4426085	3L_4426085_SNP [dm3] 3L_4426085_SNP [dm6]	T	C	3.166e^-4	0.752	SYNONYMOUS_CODING CG15020
2L	3271738	2L_3271738_SNP [dm3] 2L_3271738_SNP [dm6]	T	C	3.168e^-4	0.752	UTR_3_PRIME CG3347
2L	15998289	2L_15998289_SNP [dm3] 2L_15998289_SNP [dm6]	A	C	3.168e^-4	0.752	INTERGENIC
3L	2664117	3L_2664117_SNP [dm3] 3L_2664117_SNP [dm6]	G	A	3.175e^-4	0.752	DOWNSTREAM CG33234 INTRON Fife
3L	9542477	3L_9542477_SNP [dm3] 3L_9549377_SNP [dm6]	C	A	3.175e^-4	0.752	INTRON CG42673
2L	8912835	2L_8912835_SNP [dm3] 2L_8912835_SNP [dm6]	T	C	3.184e^-4	0.752	INTRON CG34398
2L	18467646	2L_18467646_SNP [dm3] 2L_18467646_SNP [dm6]	G	C	3.184e^-4	0.752	INTRON let-7-C
3R	23315488	3R_23315488_SNP [dm3] 3R_27489766_SNP [dm6]	G	T	3.186e^-4	0.752	UTR_3_PRIME Gr98a
2L	15632228	2L_15632228_SNP [dm3] 2L_15632228_SNP [dm6]	T	A	3.194e^-4	0.752	UTR_3_PRIME CG18480
4	643014	4_643014_SNP [dm3] 4_622388_SNP [dm6]	T	C	3.198e^-4	0.752	UTR_3_PRIME Eph DOWNSTREAM mav	transposable element FlyBase
2L	5403059	2L_5403059_SNP [dm3] 2L_5403059_SNP [dm6]	C	A	3.206e^-4	0.752	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
X	17042412	X_17042412_SNP [dm3] X_17148379_SNP [dm6]	C	G	3.207e^-4	0.752	UPSTREAM CG5010 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3R	12663958	3R_12663958_SNP [dm3] 3R_16838236_SNP [dm6]	A	T	3.208e^-4	0.752	INTRON iab-8	TF binding site mE1_TFBS_cad
X	18372628	X_18372628_SNP [dm3] X_18478595_SNP [dm6]	G	T	3.216e^-4	0.752	INTRON CG32547
3R	23237430	3R_23237430_SNP [dm3] 3R_27411708_SNP [dm6]	A	G	3.222e^-4	0.752	INTRON side
2L	16701534	2L_16701534_SNP [dm3] 2L_16701534_SNP [dm6]	A	G	3.224e^-4	0.752	UPSTREAM CR43669 EXON CR43670	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6455969	X_6455969_SNP [dm3] X_6561936_SNP [dm6]	A	G	3.226e^-4	0.752	SYNONYMOUS_CODING CG34417	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5198566	2L_5198566_SNP [dm3] 2L_5198566_SNP [dm6]	T	A	3.227e^-4	0.752	INTRON Msp300	TF binding site mE1_TFBS_chinmo
2R	14971352	2R_14971352_SNP [dm3] 2R_19083847_SNP [dm6]	A	T	3.240e^-4	0.752	INTRON 5-HT1A
X	5552864	X_5552864_SNP [dm3] X_5658831_SNP [dm6]	C	T	3.246e^-4	0.752	INTRON CG42265	TF binding site mE1_TFBS_chinmo
3R	25182304	3R_25182304_SNP [dm3] 3R_29356582_SNP [dm6]	T	C	3.251e^-4	0.752	EXON CR45547
2L	16693848	2L_16693848_SNP [dm3] 2L_16693848_SNP [dm6]	C	A	3.255e^-4	0.752	INTRON grp
2L	9038555	2L_9038555_SNP [dm3] 2L_9038555_SNP [dm6]	G	A	3.255e^-4	0.752	INTERGENIC
3L	4737688	3L_4737688_SNP [dm3] 3L_4737688_SNP [dm6]	G	A	3.260e^-4	0.752	INTRON RhoGEF64C
3R	19088328	3R_19088328_SNP [dm3] 3R_23262606_SNP [dm6]	G	A	3.263e^-4	0.752	UTR_3_PRIME orb
2L	4108832	2L_4108832_SNP [dm3] 2L_4108832_SNP [dm6]	A	T	3.264e^-4	0.752	INTRON ed
3L	13872978	3L_13872978_SNP [dm3] 3L_13879878_SNP [dm6]	G	T	3.265e^-4	0.752	INTRON dysc & 1 other
X	19230563	X_19230563_SNP [dm3] X_19336530_SNP [dm6]	T	C	3.278e^-4	0.752	INTRON nAChRalpha7
3L	15957253	3L_15957253_SNP [dm3] 3L_15964153_SNP [dm6]	G	A	3.279e^-4	0.752	SYNONYMOUS_CODING l_3_72Ab	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	4590185	X_4590185_SNP [dm3] X_4696152_SNP [dm6]	A	G	3.296e^-4	0.752	INTRON ctp
2L	5443138	2L_5443138_SNP [dm3] 2L_5443138_SNP [dm6]	A	T	3.298e^-4	0.752	INTERGENIC
2L	21056844	2L_21056844_SNP [dm3] 2L_21056844_SNP [dm6]	A	G	3.298e^-4	0.752	NON_SYNONYMOUS_CODING Itgbetanu DOWNSTREAM CG9265	TF binding site mE1_TFBS_sens
3L	3867811	3L_3867811_SNP [dm3] 3L_3867811_SNP [dm6]	A	T	3.299e^-4	0.752	INTERGENIC
X	21323609	X_21323609_SNP [dm3] X_21452582_SNP [dm6]	A	G	3.305e^-4	0.752	INTRON CG42343	transposable element FlyBase
3L	8159346	3L_8159346_SNP [dm3] 3L_8166246_SNP [dm6]	G	T	3.305e^-4	0.752	UPSTREAM CG13675 INTERGENIC
2L	10143624	2L_10143624_SNP [dm3] 2L_10143624_SNP [dm6]	A	G	3.306e^-4	0.752	INTRON CG44153
2R	3799870	2R_3799870_SNP [dm3] 2R_7912365_SNP [dm6]	C	A	3.318e^-4	0.752	INTRON CG30377
2L	14243247	2L_14243247_SNP [dm3] 2L_14243247_SNP [dm6]	C	T	3.322e^-4	0.752	INTERGENIC
2L	7998838	2L_7998838_SNP [dm3] 2L_7998838_SNP [dm6]	G	T	3.329e^-4	0.752	UPSTREAM Sirup & 1 other DOWNSTREAM Wwox INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	17572332	2R_17572332_SNP [dm3] 2R_21684827_SNP [dm6]	G	A	3.337e^-4	0.752	UTR_3_PRIME CG30263 UPSTREAM CG10306	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
4	476858	4_476858_SNP [dm3] 4_456232_SNP [dm6]	A	T	3.339e^-4	0.752	INTERGENIC	transposable element FlyBase
3R	15632049	3R_15632049_SNP [dm3] 3R_19806327_SNP [dm6]	G	C	3.340e^-4	0.752	INTRON bnl	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
4	900582	4_900582_SNP [dm3] 4_879956_SNP [dm6]	C	A	3.342e^-4	0.752	INTRON unc-13 EXON CR44029	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13347624	2L_13347624_DEL [dm3] 2L_13347624_DEL [dm6]	CC	C	3.348e^-4	0.752	UPSTREAM CG16826 INTERGENIC
3R	13589731	3R_13589731_SNP [dm3] 3R_17764009_SNP [dm6]	G	A	3.351e^-4	0.752	UPSTREAM TyrR INTERGENIC
2L	17840436	2L_17840436_SNP [dm3] 2L_17840436_SNP [dm6]	G	A	3.357e^-4	0.752	INTRON CadN2
4	843617	4_843617_DEL [dm3] 4_822991_DEL [dm6]	TCTAAAATCTGTAT...	T	3.358e^-4	0.752	INTRON Sox102F	transposable element FlyBase
3R	13589858	3R_13589858_SNP [dm3] 3R_17764136_SNP [dm6]	G	A	3.359e^-4	0.752	UPSTREAM TyrR INTERGENIC
X	21322971	X_21322971_INS [dm3] X_21451944_INS [dm6]	C	CTGCTC	3.361e^-4	0.752	INTRON CG42343
3R	23315487	3R_23315487_SNP [dm3] 3R_27489765_SNP [dm6]	G	A	3.362e^-4	0.752	UTR_3_PRIME Gr98a
X	15977727	X_15977727_SNP [dm3] X_16083694_SNP [dm6]	G	A	3.369e^-4	0.752	INTRON Tob & 1 other
2L	17863047	2L_17863047_SNP [dm3] 2L_17863047_SNP [dm6]	C	T	3.370e^-4	0.752	INTRON CadN2
2L	16706685	2L_16706685_SNP [dm3] 2L_16706685_SNP [dm6]	A	T	3.375e^-4	0.752	INTRON CG31808
2L	16988951	2L_16988951_SNP [dm3] 2L_16988951_SNP [dm6]	G	A	3.386e^-4	0.752	INTRON beat-IIIb
X	13987908	X_13987908_SNP [dm3] X_14093875_SNP [dm6]	T	C	3.397e^-4	0.752	INTERGENIC
2L	4811824	2L_4811824_SNP [dm3] 2L_4811824_SNP [dm6]	C	A	3.399e^-4	0.752	EXON CR45297	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	19123059	2L_19123059_SNP [dm3] 2L_19123059_SNP [dm6]	A	T	3.405e^-4	0.752	DOWNSTREAM l_2_37Cb INTRON l_2_37Cc
2L	9646484	2L_9646484_DEL [dm3] 2L_9646484_DEL [dm6]	TAC	T	3.409e^-4	0.752	INTRON Apoltp
2L	9646488	2L_9646488_SNP [dm3] 2L_9646488_SNP [dm6]	T	A	3.409e^-4	0.752	INTRON Apoltp
2L	9646499	2L_9646499_DEL [dm3] 2L_9646499_DEL [dm6]	ATGT	A	3.409e^-4	0.752	INTRON Apoltp
X	12214309	X_12214309_INS [dm3] X_12320276_INS [dm6]	G	GGG	3.409e^-4	0.752	INTRON Ten-a
3R	25075252	3R_25075252_SNP [dm3] 3R_29249530_SNP [dm6]	G	A	3.415e^-4	0.752	UPSTREAM SP1029 INTRON SP1029
2L	12329171	2L_12329171_SNP [dm3] 2L_12329171_SNP [dm6]	T	G	3.416e^-4	0.752	INTERGENIC
3L	681811	3L_681811_SNP [dm3] 3L_681811_SNP [dm6]	T	G	3.423e^-4	0.752	INTRON CG3386	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6279969	3L_6279969_SNP [dm3] 3L_6286869_SNP [dm6]	G	T	3.423e^-4	0.752	INTERGENIC
2R	16498085	2R_16498085_SNP [dm3] 2R_20610580_SNP [dm6]	G	A	3.443e^-4	0.752	INTRON Hil
2L	3267295	2L_3267295_SNP [dm3] 2L_3267295_SNP [dm6]	A	T	3.447e^-4	0.752	UPSTREAM CR44484 INTERGENIC
3R	13799511	3R_13799511_SNP [dm3] 3R_17973789_SNP [dm6]	T	C	3.458e^-4	0.752	INTRON cpo
3L	2440393	3L_2440393_SNP [dm3] 3L_2440393_SNP [dm6]	T	A	3.460e^-4	0.752	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco
2L	9280115	2L_9280115_SNP [dm3] 2L_9280115_SNP [dm6]	A	T	3.464e^-4	0.752	INTRON Ggamma30A
2R	6153035	2R_6153035_SNP [dm3] 2R_10265530_SNP [dm6]	A	T	3.464e^-4	0.752	UPSTREAM CG12910 INTRON CG12910	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12725430	2L_12725430_SNP [dm3] 2L_12725430_SNP [dm6]	G	T	3.470e^-4	0.752	INTRON MRP
3L	897184	3L_897184_SNP [dm3] 3L_897184_SNP [dm6]	A	G	3.471e^-4	0.752	NON_SYNONYMOUS_CODING CG34056 UPSTREAM CG34057
2R	13840498	2R_13840498_SNP [dm3] 2R_17952993_SNP [dm6]	G	A	3.472e^-4	0.752	INTERGENIC
2L	17863775	2L_17863775_DEL [dm3] 2L_17863775_DEL [dm6]	TAA	T	3.473e^-4	0.752	INTRON CadN2
2L	17863782	2L_17863782_DEL [dm3] 2L_17863782_DEL [dm6]	CGCATTTTACAAAT...	A	3.473e^-4	0.752	INTRON CadN2
2L	12845333	2L_12845333_SNP [dm3] 2L_12845333_SNP [dm6]	C	T	3.476e^-4	0.752	INTERGENIC
2L	15632177	2L_15632177_SNP [dm3] 2L_15632177_SNP [dm6]	T	A	3.482e^-4	0.752	UTR_3_PRIME CG18480
2L	17863701	2L_17863701_DEL [dm3] 2L_17863701_DEL [dm6]	CACTGCT	C	3.482e^-4	0.752	INTRON CadN2
2L	17863745	2L_17863745_DEL [dm3] 2L_17863745_DEL [dm6]	TAAATAAAGTCTAGGTTGTG...	T	3.483e^-4	0.752	INTRON CadN2
2R	10625671	2R_10625671_SNP [dm3] 2R_14738166_SNP [dm6]	G	T	3.484e^-4	0.752	EXON CR43428
2L	16693821	2L_16693821_SNP [dm3] 2L_16693821_SNP [dm6]	G	A	3.488e^-4	0.752	INTRON grp
3L	16164848	3L_16164848_SNP [dm3] 3L_16171748_SNP [dm6]	A	C	3.498e^-4	0.752	UPSTREAM CG33795 INTERGENIC
X	16065029	X_16065029_SNP [dm3] X_16170996_SNP [dm6]	A	G	3.503e^-4	0.752	INTERGENIC
3L	10885990	3L_10885990_SNP [dm3] 3L_10892890_SNP [dm6]	A	C	3.504e^-4	0.752	DOWNSTREAM Cpr67Fa2 & 1 other INTERGENIC
2R	16547721	2R_16547721_SNP [dm3] 2R_20660216_SNP [dm6]	A	G	3.506e^-4	0.752	SYNONYMOUS_CODING Lrt
2L	4455536	2L_4455536_SNP [dm3] 2L_4455536_SNP [dm6]	G	C	3.510e^-4	0.752	SYNONYMOUS_CODING Gs1l DOWNSTREAM CG15434	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	19879390	X_19879390_SNP [dm3] X_19985357_SNP [dm6]	G	A	3.510e^-4	0.752	INTERGENIC
2L	17839069	2L_17839069_SNP [dm3] 2L_17839069_SNP [dm6]	G	A	3.510e^-4	0.752	INTRON CadN2
3R	15673811	3R_15673811_SNP [dm3] 3R_19848089_SNP [dm6]	A	G	3.511e^-4	0.752	INTRON CG4662	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	18028964	2L_18028964_SNP [dm3] 2L_18028964_SNP [dm6]	G	C	3.511e^-4	0.752	INTRON rdo
3L	14206363	3L_14206363_SNP [dm3] 3L_14213263_SNP [dm6]	T	G	3.514e^-4	0.752	INTRON nuf	TF binding site mE1_TFBS_bab1
2R	8925197	2R_8925197_SNP [dm3] 2R_13037692_SNP [dm6]	A	T	3.526e^-4	0.752	INTERGENIC
2L	17132694	2L_17132694_SNP [dm3] 2L_17132694_SNP [dm6]	G	A	3.530e^-4	0.752	INTRON beat-IIIa & 1 other
2L	12693331	2L_12693331_SNP [dm3] 2L_12693331_SNP [dm6]	C	T	3.531e^-4	0.752	SYNONYMOUS_CODING CG6153 UPSTREAM CG5525 DOWNSTREAM CG5780	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8568609	3L_8568609_SNP [dm3] 3L_8575509_SNP [dm6]	G	T	3.540e^-4	0.752	INTRON CG6638	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	8543188	2R_8543188_SNP [dm3] 2R_12655683_SNP [dm6]	G	A	3.546e^-4	0.752	UTR_3_PRIME ZnT49B UPSTREAM CG8646
2L	12713368	2L_12713368_SNP [dm3] 2L_12713368_SNP [dm6]	T	A	3.548e^-4	0.752	NON_SYNONYMOUS_CODING CG5792 UPSTREAM CG5787
X	8089206	X_8089206_SNP [dm3] X_8195173_SNP [dm6]	T	A	3.553e^-4	0.752	INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	13803442	2R_13803442_SNP [dm3] 2R_17915937_SNP [dm6]	T	C	3.555e^-4	0.752	INTRON Elk
3L	12109704	3L_12109704_SNP [dm3] 3L_12116604_SNP [dm6]	G	A	3.557e^-4	0.752	INTRON l_3_j2D3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	12378585	2R_12378585_SNP [dm3] 2R_16491080_SNP [dm6]	C	T	3.558e^-4	0.752	UPSTREAM S-Lap8 INTERGENIC
2L	3931379	2L_3931379_SNP [dm3] 2L_3931379_SNP [dm6]	T	C	3.559e^-4	0.752	INTRON fred
2L	4516241	2L_4516241_SNP [dm3] 2L_4516241_SNP [dm6]	G	C	3.561e^-4	0.752	SYNONYMOUS_CODING dp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	5424817	3L_5424817_SNP [dm3] 3L_5431717_SNP [dm6]	G	T	3.566e^-4	0.752	SYNONYMOUS_CODING CG34391	TF binding site mE1_TFBS_inv
2L	3929748	2L_3929748_SNP [dm3] 2L_3929748_SNP [dm6]	G	T	3.575e^-4	0.752	INTRON fred
2L	367126	2L_367126_SNP [dm3] 2L_367126_SNP [dm6]	A	G	3.576e^-4	0.752	INTERGENIC
3R	23329119	3R_23329119_SNP [dm3] 3R_27503397_SNP [dm6]	C	A	3.592e^-4	0.752	UPSTREAM CG5402 INTERGENIC
2L	17463295	2L_17463295_SNP [dm3] 2L_17463295_SNP [dm6]	A	G	3.605e^-4	0.752	SYNONYMOUS_CODING BicD	TF binding site mE1_TFBS_HSA
2L	13987023	2L_13987023_SNP [dm3] 2L_13987023_SNP [dm6]	C	T	3.608e^-4	0.752	INTRON rk	TF binding site mE1_TFBS_HSA
2R	18208945	2R_18208945_SNP [dm3] 2R_22321440_SNP [dm6]	T	C	3.614e^-4	0.752	UPSTREAM CR44756 INTRON Gp150	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	23323089	3R_23323089_SNP [dm3] 3R_27497367_SNP [dm6]	T	A	3.617e^-4	0.752	INTERGENIC
3L	9982239	3L_9982239_SNP [dm3] 3L_9989139_SNP [dm6]	A	G	3.622e^-4	0.752	INTRON dpr6
2L	12302560	2L_12302560_SNP [dm3] 2L_12302560_SNP [dm6]	C	G	3.637e^-4	0.752	INTRON aret
X	3548056	X_3548056_SNP [dm3] X_3654023_SNP [dm6]	A	C	3.638e^-4	0.752	INTRON AstA-R1
3L	8314790	3L_8314790_SNP [dm3] 3L_8321690_SNP [dm6]	A	G	3.645e^-4	0.752	INTRON CG13670
3L	14363696	3L_14363696_SNP [dm3] 3L_14370596_SNP [dm6]	C	T	3.646e^-4	0.752	UPSTREAM CG13481 INTERGENIC
2L	4812274	2L_4812274_SNP [dm3] 2L_4812274_SNP [dm6]	T	C	3.647e^-4	0.752	UPSTREAM CR45297 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3R	27706841	3R_27706841_SNP [dm3] 3R_31881119_SNP [dm6]	T	C	3.654e^-4	0.752	INTRON heph	TF binding site BDTNP1_TFBS_dl
X	8493385	X_8493385_SNP [dm3] X_8599352_SNP [dm6]	T	C	3.655e^-4	0.752	SYNONYMOUS_CODING Crag	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19532480	2R_19532480_SNP [dm3] 2R_23644957_SNP [dm6]	C	A	3.658e^-4	0.752	INTRON retn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
4	1167618	4_1167618_SNP [dm3] 4_1146992_SNP [dm6]	G	T	3.660e^-4	0.752	UPSTREAM CG32017 & 1 other INTRON CG32017
3L	469038	3L_469038_DEL [dm3] 3L_469038_DEL [dm6]	AGT	A	3.663e^-4	0.752	INTRON klar
3L	7874245	3L_7874245_SNP [dm3] 3L_7881145_SNP [dm6]	T	C	3.667e^-4	0.752	INTRON CG32365
3R	25301492	3R_25301492_SNP [dm3] 3R_29475770_SNP [dm6]	C	T	3.667e^-4	0.752	INTRON Ptp99A
3R	25182095	3R_25182095_SNP [dm3] 3R_29356373_SNP [dm6]	T	C	3.669e^-4	0.752	EXON CR45547
2R	8830965	2R_8830965_SNP [dm3] 2R_12943460_SNP [dm6]	T	G	3.672e^-4	0.752	SYNONYMOUS_CODING Mdr49	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	16657094	2L_16657094_SNP [dm3] 2L_16657094_SNP [dm6]	G	A	3.676e^-4	0.752	UPSTREAM CG42389 INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	17863653	2L_17863653_SNP [dm3] 2L_17863653_SNP [dm6]	C	A	3.679e^-4	0.752	INTRON CadN2
2L	12060708	2L_12060708_SNP [dm3] 2L_12060708_SNP [dm6]	G	C	3.681e^-4	0.752	NON_SYNONYMOUS_CODING Rab3-GAP
3R	26028570	3R_26028570_SNP [dm3] 3R_30202848_SNP [dm6]	G	A	3.685e^-4	0.752	START_GAINED CG9743 UTR_5_PRIME CG9743	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	26028571	3R_26028571_SNP [dm3] 3R_30202849_SNP [dm6]	A	G	3.685e^-4	0.752	UTR_5_PRIME CG9743	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	26028573	3R_26028573_DEL [dm3] 3R_30202851_DEL [dm6]	ATACTTCGGTACTACGGAT...	C	3.685e^-4	0.752	UTR_5_PRIME CG9743	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	26029899	3R_26029899_SNP [dm3] 3R_30204177_SNP [dm6]	C	T	3.685e^-4	0.752	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	466071	2R_466071_SNP [dm3] 2R_4578566_SNP [dm6]	G	T	3.691e^-4	0.752	INTERGENIC
2L	13870778	2L_13870778_SNP [dm3] 2L_13870778_SNP [dm6]	C	T	3.691e^-4	0.752	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	4430326	3L_4430326_DEL [dm3] 3L_4430326_DEL [dm6]	TAT	T	3.701e^-4	0.752	DOWNSTREAM nAChRbeta1 INTRON nAChRbeta1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20484695	X_20484695_INS [dm3] X_20613668_INS [dm6]	A	AA	3.702e^-4	0.752	INTRON RunxA
2L	16712018	2L_16712018_SNP [dm3] 2L_16712018_SNP [dm6]	T	G	3.703e^-4	0.752	INTRON CG31808
3R	19034753	3R_19034753_SNP [dm3] 3R_23209031_SNP [dm6]	A	C	3.704e^-4	0.752	INTRON cnc
2L	7044949	2L_7044949_SNP [dm3] 2L_7044949_SNP [dm6]	T	C	3.705e^-4	0.752	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
4	1079329	4_1079329_DEL [dm3] 4_1058703_DEL [dm6]	AGCCGAGTCTATCTGCCCAT...	A	3.707e^-4	0.752	INTRON Zyx
3L	6965575	3L_6965575_SNP [dm3] 3L_6972475_SNP [dm6]	A	G	3.712e^-4	0.752	UPSTREAM CG10063 DOWNSTREAM CG9953 & 1 other INTERGENIC
3L	15749269	3L_15749269_SNP [dm3] 3L_15756169_SNP [dm6]	A	G	3.725e^-4	0.752	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	7595254	X_7595254_SNP [dm3] X_7701221_SNP [dm6]	T	A	3.726e^-4	0.752	INTRON CHES-1-like
X	7147082	X_7147082_SNP [dm3] X_7253049_SNP [dm6]	T	A	3.733e^-4	0.752	INTRON CR44357	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
4	954842	4_954842_SNP [dm3] 4_934216_SNP [dm6]	T	G	3.738e^-4	0.752	INTERGENIC	transposable element FlyBase
2L	7567887	2L_7567887_SNP [dm3] 2L_7567887_SNP [dm6]	A	G	3.739e^-4	0.752	INTRON RapGAP1
2L	12705853	2L_12705853_SNP [dm3] 2L_12705853_SNP [dm6]	G	A	3.741e^-4	0.752	SYNONYMOUS_CODING spict DOWNSTREAM CG15484	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	20006905	3R_20006905_SNP [dm3] 3R_24181183_SNP [dm6]	G	A	3.747e^-4	0.752	UTR_3_PRIME CG13606 INTRON CG13606
3R	14847239	3R_14847239_SNP [dm3] 3R_19021517_SNP [dm6]	G	A	3.750e^-4	0.752	NON_SYNONYMOUS_CODING gukh UTR_3_PRIME gukh DOWNSTREAM CG6005	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9333146	3L_9333146_SNP [dm3] 3L_9340046_SNP [dm6]	T	G	3.752e^-4	0.752	UPSTREAM PGRP-LC INTRON PGRP-LC	TF binding site mE1_TFBS_Trl
4	941954	4_941954_DEL [dm3] 4_921328_DEL [dm6]	TT	T	3.754e^-4	0.752	INTRON eIF4G
2R	17764401	2R_17764401_SNP [dm3] 2R_21876896_SNP [dm6]	G	C	3.759e^-4	0.752	INTRON Fili
3R	20832489	3R_20832489_SNP [dm3] 3R_25006767_SNP [dm6]	C	G	3.763e^-4	0.752	INTRON tnc
X	17232562	X_17232562_SNP [dm3] X_17338529_SNP [dm6]	A	G	3.765e^-4	0.752	INTERGENIC
3L	9506105	3L_9506105_SNP [dm3] 3L_9513005_SNP [dm6]	G	A	3.767e^-4	0.752	UPSTREAM CG33703 DOWNSTREAM CR33701 INTRON CG33702
3L	12411561	3L_12411561_SNP [dm3] 3L_12418461_SNP [dm6]	C	T	3.779e^-4	0.752	UPSTREAM ArfGAP1 INTERGENIC	TF binding site mE1_TFBS_cnc
3L	4876217	3L_4876217_SNP [dm3] 3L_4876217_SNP [dm6]	A	T	3.779e^-4	0.752	INTRON CG17150
2R	18942667	2R_18942667_SNP [dm3] 2R_23055144_SNP [dm6]	C	T	3.781e^-4	0.752	UPSTREAM CG44252 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6560672	3L_6560672_SNP [dm3] 3L_6567572_SNP [dm6]	G	A	3.784e^-4	0.752	SYNONYMOUS_CODING jv INTRON CG18769
2R	14778593	2R_14778593_SNP [dm3] 2R_18891088_SNP [dm6]	T	A	3.789e^-4	0.752	INTRON sano
3L	798411	3L_798411_SNP [dm3] 3L_798411_SNP [dm6]	G	T	3.791e^-4	0.752	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	8253764	3L_8253764_SNP [dm3] 3L_8260664_SNP [dm6]	T	C	3.797e^-4	0.752	SYNONYMOUS_CODING Dscam4
3R	27237931	3R_27237931_SNP [dm3] 3R_31412209_SNP [dm6]	G	C	3.803e^-4	0.752	INTRON Gprk2	TF binding site mE1_TFBS_cad
3L	1012215	3L_1012215_SNP [dm3] 3L_1012215_SNP [dm6]	A	G	3.814e^-4	0.752	INTRON trio
X	8142514	X_8142514_SNP [dm3] X_8248481_SNP [dm6]	T	C	3.828e^-4	0.752	DOWNSTREAM ND75 & 1 other INTERGENIC
X	16219246	X_16219246_DEL [dm3] X_16325213_DEL [dm6]	AT	A	3.831e^-4	0.752	UPSTREAM CalpC DOWNSTREAM CG32579 INTRON CG32579
X	17507597	X_17507597_SNP [dm3] X_17613564_SNP [dm6]	A	C	3.832e^-4	0.752	INTERGENIC
3R	9867657	3R_9867657_SNP [dm3] 3R_14041935_SNP [dm6]	A	G	3.832e^-4	0.752	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10689869	3L_10689869_SNP [dm3] 3L_10696769_SNP [dm6]	G	A	3.833e^-4	0.752	UTR_5_PRIME NijA
3L	15746081	3L_15746081_SNP [dm3] 3L_15752981_SNP [dm6]	T	C	3.833e^-4	0.752	INTERGENIC
2R	20125026	2R_20125026_INS [dm3] 2R_24237503_INS [dm6]	T	TT	3.836e^-4	0.752	EXON CR44827
X	14769918	X_14769918_SNP [dm3] X_14875885_SNP [dm6]	A	G	3.838e^-4	0.752	SYNONYMOUS_CODING CG45065 UTR_3_PRIME CG45064 INTRON Flo2
3L	12742164	3L_12742164_SNP [dm3] 3L_12749064_SNP [dm6]	C	T	3.840e^-4	0.752	UPSTREAM Klc INTRON Klc
X	13101211	X_13101211_INS [dm3] X_13207178_INS [dm6]	A	AAATAT	3.847e^-4	0.752	INTRON sno
X	3547224	X_3547224_SNP [dm3] X_3653191_SNP [dm6]	G	A	3.850e^-4	0.752	INTRON AstA-R1
4	557375	4_557375_SNP [dm3] 4_536749_SNP [dm6]	C	T	3.858e^-4	0.752	INTRON zfh2
2L	4700888	2L_4700888_SNP [dm3] 2L_4700888_SNP [dm6]	A	C	3.858e^-4	0.752	UTR_3_PRIME Taf12L INTRON CG34351
X	7802689	X_7802689_SNP [dm3] X_7908656_SNP [dm6]	A	T	3.862e^-4	0.752	UPSTREAM dpr14 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	15122986	2L_15122986_SNP [dm3] 2L_15122986_SNP [dm6]	T	A	3.863e^-4	0.752	INTERGENIC
3L	9506110	3L_9506110_SNP [dm3] 3L_9513010_SNP [dm6]	A	T	3.863e^-4	0.752	UPSTREAM CG33703 DOWNSTREAM CR33701 INTRON CG33702
2L	18463818	2L_18463818_SNP [dm3] 2L_18463818_SNP [dm6]	T	G	3.864e^-4	0.752	INTRON let-7-C
2R	14897894	2R_14897894_SNP [dm3] 2R_19010389_SNP [dm6]	T	C	3.866e^-4	0.752	INTERGENIC
3L	16162657	3L_16162657_SNP [dm3] 3L_16169557_SNP [dm6]	G	C	3.866e^-4	0.752	SYNONYMOUS_CODING CG33796
3L	15270645	3L_15270645_SNP [dm3] 3L_15277545_SNP [dm6]	G	C	3.871e^-4	0.752	INTERGENIC
3R	17360570	3R_17360570_SNP [dm3] 3R_21534848_SNP [dm6]	C	T	3.874e^-4	0.752	EXON CR44033	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	8010347	X_8010347_SNP [dm3] X_8116314_SNP [dm6]	A	T	3.878e^-4	0.752	UPSTREAM CG1575 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	20294175	3R_20294175_SNP [dm3] 3R_24468453_SNP [dm6]	A	T	3.883e^-4	0.752	UPSTREAM CG31128 INTERGENIC
3R	26980699	3R_26980699_SNP [dm3] 3R_31154977_SNP [dm6]	T	C	3.888e^-4	0.752	SYNONYMOUS_CODING Gycbeta100B
2R	7832835	2R_7832835_SNP [dm3] 2R_11945330_SNP [dm6]	G	T	3.892e^-4	0.752	INTRON CG13188
3R	26179528	3R_26179528_SNP [dm3] 3R_30353806_SNP [dm6]	A	G	3.897e^-4	0.752	INTRON hdc
3L	5966593	3L_5966593_SNP [dm3] 3L_5973493_SNP [dm6]	T	C	3.904e^-4	0.752	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	12459822	2L_12459822_DEL [dm3] 2L_12459822_DEL [dm6]	TGGT	T	3.906e^-4	0.752	DOWNSTREAM mir-967 INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	17695774	3L_17695774_SNP [dm3] 3L_17702674_SNP [dm6]	C	G	3.911e^-4	0.752	INTRON Ccn
4	969723	4_969723_SNP [dm3] 4_949097_SNP [dm6]	G	A	3.913e^-4	0.752	UTR_3_PRIME mGluR
3R	22270844	3R_22270844_SNP [dm3] 3R_26445122_SNP [dm6]	A	G	3.914e^-4	0.752	INTRON tx
X	21322929	X_21322929_SNP [dm3] X_21451902_SNP [dm6]	C	T	3.915e^-4	0.752	INTRON CG42343
4	584802	4_584802_SNP [dm3] 4_564176_SNP [dm6]	A	T	3.919e^-4	0.752	INTRON Pur-alpha
3L	8568383	3L_8568383_SNP [dm3] 3L_8575283_SNP [dm6]	G	C	3.924e^-4	0.752	SYNONYMOUS_CODING CG6638 DOWNSTREAM rhea	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26877039	3R_26877039_SNP [dm3] 3R_31051317_SNP [dm6]	C	T	3.925e^-4	0.752	SYNONYMOUS_CODING Aph-4 UPSTREAM mir-4948	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8322611	3L_8322611_SNP [dm3] 3L_8329511_SNP [dm6]	G	C	3.926e^-4	0.752	NON_SYNONYMOUS_CODING CG34462	TF binding site mE1_TFBS_ttk
X	14695783	X_14695783_SNP [dm3] X_14801750_SNP [dm6]	C	A	3.928e^-4	0.752	INTRON rut
3L	16818114	3L_16818114_DEL [dm3] 3L_16825014_DEL [dm6]	GG	G	3.931e^-4	0.752	INTRON CG13024
3L	8648526	3L_8648526_SNP [dm3] 3L_8655426_SNP [dm6]	G	T	3.933e^-4	0.752	INTERGENIC	TF binding site mE1_TFBS_cad
3R	16528700	3R_16528700_SNP [dm3] 3R_20702978_SNP [dm6]	T	A	3.933e^-4	0.752	INTRON Oamb
3L	13834816	3L_13834816_SNP [dm3] 3L_13841716_SNP [dm6]	T	G	3.933e^-4	0.752	SYNONYMOUS_CODING CG8757 DOWNSTREAM CG8750	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	20027858	3R_20027858_SNP [dm3] 3R_24202136_SNP [dm6]	C	A	3.936e^-4	0.752	INTRON twin
3R	12550816	3R_12550816_SNP [dm3] 3R_16725094_SNP [dm6]	A	T	3.941e^-4	0.752	INTRON Ubx
3R	2657704	3R_2657704_SNP [dm3] 3R_6831982_SNP [dm6]	A	T	3.945e^-4	0.752	INTRON Scr	regulatory region REDfly_CRMs
3R	14678909	3R_14678909_DEL [dm3] 3R_18853187_DEL [dm6]	CC	C	3.950e^-4	0.752	INTERGENIC
3R	2657687	3R_2657687_SNP [dm3] 3R_6831965_SNP [dm6]	A	G	3.965e^-4	0.753	INTRON Scr	regulatory region REDfly_CRMs
2R	17763703	2R_17763703_SNP [dm3] 2R_21876198_SNP [dm6]	T	G	3.966e^-4	0.753	INTRON Fili
3R	25342264	3R_25342264_SNP [dm3] 3R_29516542_SNP [dm6]	T	G	3.968e^-4	0.753	DOWNSTREAM CG2014 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17095599	2R_17095599_INS [dm3] 2R_21208094_INS [dm6]	G	GCA	3.973e^-4	0.753	INTRON CG44245 & 1 other
3L	2260288	3L_2260288_SNP [dm3] 3L_2260288_SNP [dm6]	G	A	3.977e^-4	0.753	SYNONYMOUS_CODING oxt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7440916	2L_7440916_SNP [dm3] 2L_7440916_SNP [dm6]	G	C	3.990e^-4	0.754	UTR_5_PRIME CG5973 INTRON CG5973
2L	7088623	2L_7088623_SNP [dm3] 2L_7088623_SNP [dm6]	T	A	3.992e^-4	0.754	INTERGENIC
3R	16529011	3R_16529011_SNP [dm3] 3R_20703289_SNP [dm6]	A	C	3.997e^-4	0.754	INTRON Oamb
X	14250108	X_14250108_SNP [dm3] X_14356075_SNP [dm6]	C	T	3.999e^-4	0.754	INTRON dpr8
X	2628002	X_2628002_SNP [dm3] X_2733969_SNP [dm6]	G	A	4.008e^-4	0.755	SYNONYMOUS_CODING CG2712 DOWNSTREAM crm	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23297692	3R_23297692_SNP [dm3] 3R_27471970_SNP [dm6]	A	G	4.014e^-4	0.756	INTERGENIC
2L	16696558	2L_16696558_SNP [dm3] 2L_16696558_SNP [dm6]	A	C	4.019e^-4	0.756	DOWNSTREAM CR44975 INTRON grp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9611292	2L_9611292_SNP [dm3] 2L_9611292_SNP [dm6]	C	A	4.025e^-4	0.756	SYNONYMOUS_CODING gcm2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	11833282	3R_11833282_SNP [dm3] 3R_16007560_SNP [dm6]	T	A	4.028e^-4	0.756	EXON CR42839	TF binding site BDTNP1_TFBS_twi
3R	13589902	3R_13589902_SNP [dm3] 3R_17764180_SNP [dm6]	T	C	4.034e^-4	0.757	UPSTREAM TyrR INTERGENIC

By genomic position
Variant impact
Gene name

Reads_Total phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results