DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.113e^-7)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2R_NS	0.05547

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2499 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	26867635	3R_26867635_SNP [dm3] 3R_31041913_SNP [dm6]	A	G	7.327e^-7	0.419	INTRON CanA1
3R	26867646	3R_26867646_SNP [dm3] 3R_31041924_SNP [dm6]	C	A	1.353e^-6	0.419	INTRON CanA1
2L	11881830	2L_11881830_SNP [dm3] 2L_11881830_SNP [dm6]	T	G	2.599e^-6	0.419	INTRON Pde1c
2L	11881864	2L_11881864_SNP [dm3] 2L_11881864_SNP [dm6]	T	A	2.864e^-6	0.419	INTRON Pde1c
2L	12127929	2L_12127929_SNP [dm3] 2L_12127929_SNP [dm6]	T	C	3.190e^-6	0.419	SYNONYMOUS_CODING CG17211	TF binding site mE1_TFBS_HSA
2L	11645889	2L_11645889_SNP [dm3] 2L_11645889_SNP [dm6]	A	C	3.522e^-6	0.419	INTRON CG6614
2L	11837049	2L_11837049_SNP [dm3] 2L_11837049_SNP [dm6]	T	C	3.613e^-6	0.419	UPSTREAM Sfp33A4 & 2 others INTRON Pde1c	transposable element FlyBase
2L	11837056	2L_11837056_SNP [dm3] 2L_11837056_SNP [dm6]	C	A	3.646e^-6	0.419	UPSTREAM Sfp33A4 & 2 others INTRON Pde1c	transposable element FlyBase
2L	11836995	2L_11836995_SNP [dm3] 2L_11836995_SNP [dm6]	A	T	3.679e^-6	0.419	UPSTREAM Sfp33A4 & 2 others INTRON Pde1c
2L	11837057	2L_11837057_SNP [dm3] 2L_11837057_SNP [dm6]	C	A	3.679e^-6	0.419	UPSTREAM Sfp33A4 & 2 others INTRON Pde1c	transposable element FlyBase
2L	11837062	2L_11837062_SNP [dm3] 2L_11837062_SNP [dm6]	C	G	3.679e^-6	0.419	UPSTREAM Sfp33A4 & 2 others INTRON Pde1c	transposable element FlyBase
2L	11836926	2L_11836926_SNP [dm3] 2L_11836926_SNP [dm6]	A	C	3.843e^-6	0.419	UPSTREAM Sfp33A4 & 2 others INTRON Pde1c
X	3142841	X_3142841_SNP [dm3] X_3248808_SNP [dm6]	A	G	3.865e^-6	0.419	SYNONYMOUS_CODING Pig1 UPSTREAM Sgs4 INTRON dnc
2L	11837066	2L_11837066_SNP [dm3] 2L_11837066_SNP [dm6]	A	C	3.910e^-6	0.419	UPSTREAM Sfp33A4 & 2 others INTRON Pde1c	transposable element FlyBase
2L	11836923	2L_11836923_SNP [dm3] 2L_11836923_SNP [dm6]	T	G	4.015e^-6	0.419	UPSTREAM Sfp33A4 & 2 others INTRON Pde1c
2L	11837114	2L_11837114_DEL [dm3] 2L_11837114_DEL [dm6]	GC	T	4.040e^-6	0.419	UPSTREAM Sfp33A4 & 2 others INTRON Pde1c
2L	11837076	2L_11837076_DEL [dm3] 2L_11837076_DEL [dm6]	ATCTTATATTCGGGGA...	A	4.479e^-6	0.419	UPSTREAM Sfp33A4 & 2 others INTRON Pde1c	transposable element FlyBase
2L	11582799	2L_11582799_SNP [dm3] 2L_11582799_SNP [dm6]	C	A	4.720e^-6	0.419	UTR_5_PRIME kek2	TF binding site BDTNP1_TFBS_dl
2L	11485819	2L_11485819_SNP [dm3] 2L_11485819_SNP [dm6]	A	T	4.856e^-6	0.419	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11485820	2L_11485820_SNP [dm3] 2L_11485820_SNP [dm6]	T	C	4.856e^-6	0.419	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11485793	2L_11485793_SNP [dm3] 2L_11485793_SNP [dm6]	C	A	5.329e^-6	0.419	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	4269679	2R_4269679_SNP [dm3] 2R_8382174_SNP [dm6]	A	G	5.392e^-6	0.419	INTRON pdm3
2L	1107131	2L_1107131_SNP [dm3] 2L_1107131_SNP [dm6]	T	C	5.543e^-6	0.419	INTRON mtRNApol	TF binding site mE1_TFBS_sens
3R	26750427	3R_26750427_SNP [dm3] 3R_30924705_SNP [dm6]	T	A	6.001e^-6	0.419	INTRON Ptx1	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	3587319	2L_3587319_SNP [dm3] 2L_3587319_SNP [dm6]	T	A	6.054e^-6	0.419	INTERGENIC
2L	11648208	2L_11648208_SNP [dm3] 2L_11648208_SNP [dm6]	C	G	6.071e^-6	0.419	NON_SYNONYMOUS_CODING CG6614	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	10126895	3R_10126895_SNP [dm3] 3R_14301173_SNP [dm6]	C	T	6.446e^-6	0.419	INTRON CG12207	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	3223965	2R_3223965_SNP [dm3] 2R_7336460_SNP [dm6]	A	G	6.770e^-6	0.419	INTRON Dscam1	TF binding site mE1_TFBS_cad
2R	3223979	2R_3223979_SNP [dm3] 2R_7336474_SNP [dm6]	A	T	6.903e^-6	0.419	INTRON Dscam1
2L	21862136	2L_21862136_SNP [dm3] 2L_21862136_SNP [dm6]	G	A	6.905e^-6	0.419	INTRON CR44917
2L	11582807	2L_11582807_SNP [dm3] 2L_11582807_SNP [dm6]	T	A	6.921e^-6	0.419	UTR_5_PRIME kek2	TF binding site BDTNP1_TFBS_dl
2L	11595896	2L_11595896_SNP [dm3] 2L_11595896_SNP [dm6]	A	G	7.356e^-6	0.431	INTRON kek2
2R	1180266	2R_1180266_SNP [dm3] 2R_5292761_SNP [dm6]	T	A	8.136e^-6	0.453	INTRON d4
X	3142765	X_3142765_SNP [dm3] X_3248732_SNP [dm6]	A	C	8.405e^-6	0.453	NON_SYNONYMOUS_CODING Pig1 UPSTREAM Sgs4 INTRON dnc
X	13672934	X_13672934_SNP [dm3] X_13778901_SNP [dm6]	T	C	8.451e^-6	0.453	UTR_3_PRIME rdgB DOWNSTREAM CtsB1
2R	12810392	2R_12810392_SNP [dm3] 2R_16922887_SNP [dm6]	C	T	1.139e^-5	0.542	INTERGENIC
X	10464935	X_10464935_SNP [dm3] X_10570902_SNP [dm6]	A	G	1.182e^-5	0.542	INTRON spri	TF binding site mE1_TFBS_chinmo
2L	4830032	2L_4830032_SNP [dm3] 2L_4830032_SNP [dm6]	C	T	1.184e^-5	0.542	SPLICE_SITE_REGION CG2976 DOWNSTREAM Ir25a INTRON CG2976 EXON mir-4912	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	7004493	3L_7004493_SNP [dm3] 3L_7011393_SNP [dm6]	A	T	1.207e^-5	0.542	INTRON Mp
3R	20371715	3R_20371715_SNP [dm3] 3R_24545993_SNP [dm6]	C	G	1.220e^-5	0.542	INTRON Esyt2
3R	9565203	3R_9565203_SNP [dm3] 3R_13739481_SNP [dm6]	A	C	1.301e^-5	0.542	INTRON CG34383	TF binding site mE1_TFBS_Trl
2L	11708268	2L_11708268_SNP [dm3] 2L_11708268_SNP [dm6]	T	C	1.332e^-5	0.542	INTERGENIC
3R	16991754	3R_16991754_SNP [dm3] 3R_21166032_SNP [dm6]	T	A	1.354e^-5	0.542	DOWNSTREAM CG5810 INTRON SNF4Agamma & 1 other
2L	3572100	2L_3572100_SNP [dm3] 2L_3572100_SNP [dm6]	A	G	1.366e^-5	0.542	INTERGENIC	TF binding site mE1_TFBS_HSA
X	21216718	X_21216718_SNP [dm3] X_21345691_SNP [dm6]	G	A	1.387e^-5	0.542	NON_SYNONYMOUS_CODING dod DOWNSTREAM fliI & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10643317	2R_10643317_SNP [dm3] 2R_14755812_SNP [dm6]	G	A	1.404e^-5	0.542	UPSTREAM CG12859 & 1 other INTRON CG10151	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	11660186	2L_11660186_SNP [dm3] 2L_11660186_SNP [dm6]	T	C	1.415e^-5	0.542	DOWNSTREAM CR44497 INTERGENIC
2L	11827227	2L_11827227_SNP [dm3] 2L_11827227_SNP [dm6]	A	G	1.475e^-5	0.542	UTR_3_PRIME esc INTRON Pde1c
2R	1180296	2R_1180296_SNP [dm3] 2R_5292791_SNP [dm6]	A	G	1.502e^-5	0.542	INTRON d4
3L	7004484	3L_7004484_SNP [dm3] 3L_7011384_SNP [dm6]	A	T	1.505e^-5	0.542	INTRON Mp
2L	11837129	2L_11837129_SNP [dm3] 2L_11837129_SNP [dm6]	C	T	1.553e^-5	0.542	UPSTREAM Sfp33A4 & 2 others INTRON Pde1c
2L	11837130	2L_11837130_SNP [dm3] 2L_11837130_SNP [dm6]	C	T	1.553e^-5	0.542	UPSTREAM Sfp33A4 & 2 others INTRON Pde1c
2L	22149246	2L_22149246_SNP [dm3] 2L_22149246_SNP [dm6]	C	T	1.555e^-5	0.542	INTRON CG42748	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11837139	2L_11837139_SNP [dm3] 2L_11837139_SNP [dm6]	T	G	1.561e^-5	0.542	UPSTREAM Sfp33A4 & 2 others INTRON Pde1c
2R	5352446	2R_5352446_SNP [dm3] 2R_9464941_SNP [dm6]	T	A	1.661e^-5	0.563	INTRON Camta
2L	7997918	2L_7997918_INS [dm3] 2L_7997918_INS [dm6]	T	TT	1.682e^-5	0.563	UPSTREAM CG7227 & 1 other INTRON CG7227	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	12814399	2R_12814399_SNP [dm3] 2R_16926894_SNP [dm6]	C	A	1.787e^-5	0.588	INTRON Pkc53E
2R	1181118	2R_1181118_SNP [dm3] 2R_5293613_SNP [dm6]	G	A	1.838e^-5	0.595	UPSTREAM d4 INTRON d4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
X	12767665	X_12767665_SNP [dm3] X_12873632_SNP [dm6]	C	T	1.953e^-5	0.614	INTRON Pde9
2L	11646496	2L_11646496_SNP [dm3] 2L_11646496_SNP [dm6]	G	T	2.018e^-5	0.614	INTRON CG6614
2L	4831614	2L_4831614_SNP [dm3] 2L_4831614_SNP [dm6]	G	A	2.019e^-5	0.614	SYNONYMOUS_CODING Ir25a UPSTREAM CG2976	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11641759	2L_11641759_SNP [dm3] 2L_11641759_SNP [dm6]	G	A	2.042e^-5	0.614	INTERGENIC
2L	5888595	2L_5888595_SNP [dm3] 2L_5888595_SNP [dm6]	T	A	2.107e^-5	0.614	UPSTREAM CR44577 DOWNSTREAM CR44578 INTERGENIC
X	10237859	X_10237859_SNP [dm3] X_10343826_SNP [dm6]	A	G	2.136e^-5	0.614	INTRON CG43740
2R	10858737	2R_10858737_SNP [dm3] 2R_14971232_SNP [dm6]	T	C	2.190e^-5	0.614	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10178407	3L_10178407_SNP [dm3] 3L_10185307_SNP [dm6]	G	A	2.348e^-5	0.614	INTRON dpr10
2L	11862875	2L_11862875_SNP [dm3] 2L_11862875_SNP [dm6]	C	G	2.366e^-5	0.614	INTRON Pde1c
3L	7004490	3L_7004490_SNP [dm3] 3L_7011390_SNP [dm6]	G	C	2.396e^-5	0.614	INTRON Mp
2R	1180572	2R_1180572_SNP [dm3] 2R_5293067_SNP [dm6]	T	G	2.408e^-5	0.614	UPSTREAM d4 INTRON d4	transposable element FlyBase
2R	1180570	2R_1180570_SNP [dm3] 2R_5293065_SNP [dm6]	A	G	2.420e^-5	0.614	UPSTREAM d4 INTRON d4	transposable element FlyBase
2L	9668423	2L_9668423_SNP [dm3] 2L_9668423_SNP [dm6]	T	C	2.434e^-5	0.614	INTERGENIC
2L	11891632	2L_11891632_SNP [dm3] 2L_11891632_SNP [dm6]	C	T	2.474e^-5	0.614	INTRON Pde1c
X	7741873	X_7741873_SNP [dm3] X_7847840_SNP [dm6]	C	G	2.578e^-5	0.614	INTERGENIC
2L	11485834	2L_11485834_SNP [dm3] 2L_11485834_SNP [dm6]	A	G	2.588e^-5	0.614	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	3223902	2R_3223902_SNP [dm3] 2R_7336397_SNP [dm6]	G	A	2.602e^-5	0.614	SYNONYMOUS_CODING Dscam1 INTRON Dscam1	TF binding site mE1_TFBS_cad
3R	5659245	3R_5659245_SNP [dm3] 3R_9833523_SNP [dm6]	T	A	2.605e^-5	0.614	INTRON Teh1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	10237845	X_10237845_DEL [dm3] X_10343812_DEL [dm6]	AGTA	A	2.664e^-5	0.614	INTRON CG43740
2L	11913762	2L_11913762_SNP [dm3] 2L_11913762_SNP [dm6]	G	A	2.714e^-5	0.614	INTRON Pde1c
2L	11389085	2L_11389085_SNP [dm3] 2L_11389085_SNP [dm6]	T	G	2.719e^-5	0.614	EXON CR43681	regulatory region REDfly_CRMs
2L	11859762	2L_11859762_SNP [dm3] 2L_11859762_SNP [dm6]	A	T	2.730e^-5	0.614	INTRON Pde1c
3R	13467125	3R_13467125_DEL [dm3] 3R_17641403_DEL [dm6]	GAATG	G	2.732e^-5	0.614	INTRON CG43175
2L	10937444	2L_10937444_SNP [dm3] 2L_10937444_SNP [dm6]	C	T	2.752e^-5	0.614	SYNONYMOUS_CODING CG14072 INTRON dpr2
2R	12810390	2R_12810390_SNP [dm3] 2R_16922885_SNP [dm6]	A	C	2.782e^-5	0.614	INTERGENIC
X	12767722	X_12767722_SNP [dm3] X_12873689_SNP [dm6]	C	A	2.794e^-5	0.614	INTRON Pde9
2L	15490316	2L_15490316_SNP [dm3] 2L_15490316_SNP [dm6]	A	T	2.809e^-5	0.614	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	19283729	3R_19283729_INS [dm3] 3R_23458007_INS [dm6]	C	CCC	2.829e^-5	0.614	INTRON CG4374	TF binding site mE1_TFBS_chinmo
2R	2965675	2R_2965675_SNP [dm3] 2R_7078170_SNP [dm6]	C	T	2.848e^-5	0.614	INTERGENIC
3R	24794883	3R_24794883_SNP [dm3] 3R_28969161_SNP [dm6]	T	A	2.975e^-5	0.615	INTRON CG14521
2R	3223350	2R_3223350_SNP [dm3] 2R_7335845_SNP [dm6]	A	C	2.984e^-5	0.615	NON_SYNONYMOUS_CODING Dscam1 DOWNSTREAM CR45129 INTRON Dscam1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	2566481	X_2566481_DEL [dm3] X_2672448_DEL [dm6]	AACAATCAA	A	2.990e^-5	0.615	INTRON sgg
2L	2857138	2L_2857138_SNP [dm3] 2L_2857138_SNP [dm6]	G	A	3.014e^-5	0.615	UPSTREAM CG2991 DOWNSTREAM RpS21 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Ubx
X	10718757	X_10718757_SNP [dm3] X_10824724_SNP [dm6]	G	A	3.017e^-5	0.615	UPSTREAM Imp DOWNSTREAM CR45624 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	2566444	X_2566444_DEL [dm3] X_2672411_DEL [dm6]	TAAGTGTGCGAGCC...	G	3.053e^-5	0.616	INTRON sgg
3L	2033997	3L_2033997_SNP [dm3] 3L_2033997_SNP [dm6]	A	C	3.102e^-5	0.617	INTERGENIC
3R	24832190	3R_24832190_SNP [dm3] 3R_29006468_SNP [dm6]	T	G	3.123e^-5	0.617	INTRON wat
3R	19283727	3R_19283727_SNP [dm3] 3R_23458005_SNP [dm6]	A	T	3.174e^-5	0.617	INTRON CG4374	TF binding site mE1_TFBS_chinmo
3R	24832160	3R_24832160_SNP [dm3] 3R_29006438_SNP [dm6]	C	T	3.214e^-5	0.617	INTRON wat
2L	11873801	2L_11873801_SNP [dm3] 2L_11873801_SNP [dm6]	A	T	3.331e^-5	0.617	INTRON Pde1c
2L	4401786	2L_4401786_SNP [dm3] 2L_4401786_SNP [dm6]	A	T	3.337e^-5	0.617	INTRON CG33003	TF binding site mE1_TFBS_cad
2L	4830538	2L_4830538_SNP [dm3] 2L_4830538_SNP [dm6]	C	T	3.359e^-5	0.617	NON_SYNONYMOUS_CODING CG2976 UPSTREAM mir-4912 DOWNSTREAM Ir25a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
2R	15461091	2R_15461091_SNP [dm3] 2R_19573586_SNP [dm6]	G	T	3.458e^-5	0.617	INTRON sm	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	10002251	3L_10002251_SNP [dm3] 3L_10009151_SNP [dm6]	G	C	3.479e^-5	0.617	INTRON dpr6
2R	5577461	2R_5577461_SNP [dm3] 2R_9689956_SNP [dm6]	G	T	3.513e^-5	0.617	INTRON Uba1	TF binding site mE1_TFBS_cad
2L	1107205	2L_1107205_SNP [dm3] 2L_1107205_SNP [dm6]	C	A	3.523e^-5	0.617	SYNONYMOUS_CODING mtRNApol	TF binding site mE1_TFBS_sens
2L	11584300	2L_11584300_SNP [dm3] 2L_11584300_SNP [dm6]	G	A	3.537e^-5	0.617	INTRON kek2
2L	11827237	2L_11827237_SNP [dm3] 2L_11827237_SNP [dm6]	G	C	3.556e^-5	0.617	UTR_3_PRIME esc INTRON Pde1c
3R	24832186	3R_24832186_SNP [dm3] 3R_29006464_SNP [dm6]	C	T	3.596e^-5	0.617	INTRON wat
3R	25300834	3R_25300834_INS [dm3] 3R_29475112_INS [dm6]	A	AAA	3.639e^-5	0.617	INTRON Ptp99A
3R	14380849	3R_14380849_SNP [dm3] 3R_18555127_SNP [dm6]	T	A	3.644e^-5	0.617	INTERGENIC
3R	24606517	3R_24606517_SNP [dm3] 3R_28780795_SNP [dm6]	C	G	3.671e^-5	0.617	INTERGENIC
2L	6671125	2L_6671125_INS [dm3] 2L_6671125_INS [dm6]	A	ATATATCTA	3.687e^-5	0.617	UTR_3_PRIME Spn27A DOWNSTREAM Spn27A INTRON cup & 1 other
2L	6671131	2L_6671131_SNP [dm3] 2L_6671131_SNP [dm6]	T	G	3.687e^-5	0.617	UTR_3_PRIME Spn27A DOWNSTREAM Spn27A INTRON cup & 1 other
2L	7462297	2L_7462297_SNP [dm3] 2L_7462297_SNP [dm6]	C	A	3.730e^-5	0.617	UPSTREAM Gr28b INTERGENIC	TF binding site mE1_TFBS_cad
3L	12201475	3L_12201475_SNP [dm3] 3L_12208375_SNP [dm6]	C	T	3.789e^-5	0.617	DOWNSTREAM app INTRON app
2L	4626941	2L_4626941_SNP [dm3] 2L_4626941_SNP [dm6]	G	A	3.802e^-5	0.617	INTERGENIC
3R	24606519	3R_24606519_SNP [dm3] 3R_28780797_SNP [dm6]	A	T	3.865e^-5	0.617	INTERGENIC
2L	11904142	2L_11904142_SNP [dm3] 2L_11904142_SNP [dm6]	C	T	3.898e^-5	0.617	INTRON Pde1c
2L	2873038	2L_2873038_DEL [dm3] 2L_2873038_DEL [dm6]	ATGGTTATAT	A	3.915e^-5	0.617	INTRON CG31694	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	556543	3L_556543_SNP [dm3] 3L_556543_SNP [dm6]	G	T	4.012e^-5	0.617	INTRON hipk	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	11646490	2L_11646490_SNP [dm3] 2L_11646490_SNP [dm6]	T	A	4.022e^-5	0.617	INTRON CG6614
2R	1190061	2R_1190061_SNP [dm3] 2R_5302556_SNP [dm6]	G	T	4.028e^-5	0.617	INTERGENIC	transposable element FlyBase
2R	18831363	2R_18831363_SNP [dm3] 2R_22943840_SNP [dm6]	T	A	4.038e^-5	0.617	NON_SYNONYMOUS_CODING CG42694
3L	12165020	3L_12165020_DEL [dm3] 3L_12171920_DEL [dm6]	TATTTTTGCTGTTTT...	T	4.087e^-5	0.617	INTRON Rh7
X	14154125	X_14154125_SNP [dm3] X_14260092_SNP [dm6]	C	A	4.099e^-5	0.617	INTERGENIC
2L	19914150	2L_19914150_SNP [dm3] 2L_19914150_SNP [dm6]	C	T	4.124e^-5	0.617	UPSTREAM Victoria INTRON sick
2L	4236298	2L_4236298_SNP [dm3] 2L_4236298_SNP [dm6]	G	T	4.142e^-5	0.617	INTERGENIC
3L	9943010	3L_9943010_SNP [dm3] 3L_9949910_SNP [dm6]	A	T	4.223e^-5	0.622	INTRON CG34356
2R	3082705	2R_3082705_SNP [dm3] 2R_7195200_SNP [dm6]	C	T	4.311e^-5	0.622	INTRON pk
2L	11647325	2L_11647325_SNP [dm3] 2L_11647325_SNP [dm6]	A	T	4.404e^-5	0.622	SYNONYMOUS_CODING CG6614	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11645525	2L_11645525_SNP [dm3] 2L_11645525_SNP [dm6]	G	T	4.412e^-5	0.622	SYNONYMOUS_CODING CG6614 UTR_3_PRIME CG6614
3L	7004497	3L_7004497_SNP [dm3] 3L_7011397_SNP [dm6]	A	G	4.433e^-5	0.622	INTRON Mp
3L	12200880	3L_12200880_SNP [dm3] 3L_12207780_SNP [dm6]	A	G	4.516e^-5	0.622	SYNONYMOUS_CODING app UTR_3_PRIME app	TF binding site mE1_TFBS_cad
2R	1182842	2R_1182842_SNP [dm3] 2R_5295337_SNP [dm6]	C	G	4.518e^-5	0.622	NON_SYNONYMOUS_CODING d4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	16752457	3R_16752457_SNP [dm3] 3R_20926735_SNP [dm6]	G	T	4.520e^-5	0.622	INTRON CG31191 & 1 other
3R	20719486	3R_20719486_SNP [dm3] 3R_24893764_SNP [dm6]	A	T	4.528e^-5	0.622	UPSTREAM CG11069 INTRON CG31121	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	8716172	3R_8716172_SNP [dm3] 3R_12890450_SNP [dm6]	C	T	4.531e^-5	0.622	INTERGENIC
2R	1190068	2R_1190068_SNP [dm3] 2R_5302563_SNP [dm6]	A	T	4.547e^-5	0.622	INTERGENIC	transposable element FlyBase
2L	4829444	2L_4829444_SNP [dm3] 2L_4829444_SNP [dm6]	A	C	4.573e^-5	0.622	UTR_3_PRIME CG2976 DOWNSTREAM CG15628 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	11646927	2L_11646927_SNP [dm3] 2L_11646927_SNP [dm6]	A	C	4.718e^-5	0.634	INTRON CG6614
X	4090214	X_4090214_SNP [dm3] X_4196181_SNP [dm6]	C	T	4.788e^-5	0.634	INTRON Fas2
2L	11485771	2L_11485771_SNP [dm3] 2L_11485771_SNP [dm6]	A	C	4.858e^-5	0.634	UTR_3_PRIME CG43355 UPSTREAM sala INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	2190921	3L_2190921_DEL [dm3] 3L_2190921_DEL [dm6]	TT	T	4.874e^-5	0.634	INTRON CG5707
2L	4819797	2L_4819797_SNP [dm3] 2L_4819797_SNP [dm6]	C	T	4.937e^-5	0.634	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9686988	2L_9686988_SNP [dm3] 2L_9686988_SNP [dm6]	A	T	4.954e^-5	0.634	INTRON Pka-C1
3L	2951295	3L_2951295_SNP [dm3] 3L_2951295_SNP [dm6]	T	C	4.955e^-5	0.634	SYNONYMOUS_CODING CG32846 INTRON Shab
2L	4819643	2L_4819643_SNP [dm3] 2L_4819643_SNP [dm6]	G	A	4.970e^-5	0.634	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	17942169	3L_17942169_INS [dm3] 3L_17949069_INS [dm6]	G	GAAAT	4.977e^-5	0.634	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10858734	2R_10858734_SNP [dm3] 2R_14971229_SNP [dm6]	C	T	5.037e^-5	0.634	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	3223518	2R_3223518_SNP [dm3] 2R_7336013_SNP [dm6]	C	G	5.053e^-5	0.634	DOWNSTREAM CR45129 INTRON Dscam1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	9565314	3R_9565314_SNP [dm3] 3R_13739592_SNP [dm6]	G	A	5.093e^-5	0.634	INTRON CG34383	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	6691428	3L_6691428_SNP [dm3] 3L_6698328_SNP [dm6]	C	T	5.155e^-5	0.634	INTRON SP1173
3R	24832164	3R_24832164_SNP [dm3] 3R_29006442_SNP [dm6]	C	A	5.169e^-5	0.634	INTRON wat
2L	3323143	2L_3323143_SNP [dm3] 2L_3323143_SNP [dm6]	A	T	5.187e^-5	0.634	DOWNSTREAM CG8837 INTERGENIC	TF binding site mE1_TFBS_cad
3L	567965	3L_567965_SNP [dm3] 3L_567965_SNP [dm6]	A	T	5.209e^-5	0.634	INTRON hipk
2L	4822980	2L_4822980_SNP [dm3] 2L_4822980_SNP [dm6]	C	A	5.347e^-5	0.637	UTR_5_PRIME CG15628	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	11584293	2L_11584293_SNP [dm3] 2L_11584293_SNP [dm6]	C	A	5.435e^-5	0.637	INTRON kek2
2L	11478068	2L_11478068_SNP [dm3] 2L_11478068_SNP [dm6]	T	A	5.478e^-5	0.637	INTERGENIC
X	19219788	X_19219788_SNP [dm3] X_19325755_SNP [dm6]	C	A	5.537e^-5	0.637	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_zfh1
X	12767617	X_12767617_SNP [dm3] X_12873584_SNP [dm6]	G	A	5.699e^-5	0.637	INTRON Pde9
3L	7520687	3L_7520687_SNP [dm3] 3L_7527587_SNP [dm6]	C	G	5.712e^-5	0.637	UTR_3_PRIME ltl	TF binding site BDTNP1_TFBS_dl
2R	11004661	2R_11004661_SNP [dm3] 2R_15117156_SNP [dm6]	C	G	5.742e^-5	0.637	INTRON chn	TF binding site BDTNP1_TFBS_dl
2L	1105930	2L_1105930_SNP [dm3] 2L_1105930_SNP [dm6]	C	A	5.792e^-5	0.637	SYNONYMOUS_CODING mtRNApol	TF binding site mE1_TFBS_cad
2L	9668312	2L_9668312_SNP [dm3] 2L_9668312_SNP [dm6]	C	T	5.795e^-5	0.637	INTERGENIC
3L	1787052	3L_1787052_SNP [dm3] 3L_1787052_SNP [dm6]	C	T	5.821e^-5	0.637	SYNONYMOUS_CODING alpha-Spec	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	9943027	3L_9943027_SNP [dm3] 3L_9949927_SNP [dm6]	C	T	5.826e^-5	0.637	INTRON CG34356
3L	12188888	3L_12188888_SNP [dm3] 3L_12195788_SNP [dm6]	A	G	5.878e^-5	0.637	EXON CR45746
3R	24832174	3R_24832174_SNP [dm3] 3R_29006452_SNP [dm6]	G	A	5.919e^-5	0.637	INTRON wat
3R	24832175	3R_24832175_SNP [dm3] 3R_29006453_SNP [dm6]	C	T	5.919e^-5	0.637	INTRON wat
2L	11171211	2L_11171211_SNP [dm3] 2L_11171211_SNP [dm6]	A	G	6.083e^-5	0.637	UTR_3_PRIME Vm32E UPSTREAM Ca-beta DOWNSTREAM Vm32E INTRON Ca-beta	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	11882782	2L_11882782_SNP [dm3] 2L_11882782_SNP [dm6]	C	T	6.116e^-5	0.637	INTRON Pde1c
2R	5142918	2R_5142918_SNP [dm3] 2R_9255413_SNP [dm6]	G	T	6.146e^-5	0.637	SYNONYMOUS_CODING Pkn
2L	11849848	2L_11849848_SNP [dm3] 2L_11849848_SNP [dm6]	A	T	6.176e^-5	0.637	UPSTREAM Mal-B2 DOWNSTREAM Mal-B1 INTRON Pde1c
3L	2368389	3L_2368389_SNP [dm3] 3L_2368389_SNP [dm6]	T	C	6.230e^-5	0.637	UTR_3_PRIME CG1317
2R	2954496	2R_2954496_SNP [dm3] 2R_7066991_SNP [dm6]	A	T	6.243e^-5	0.637	DOWNSTREAM Tsp42Er INTERGENIC	TF binding site mE1_TFBS_cad
2L	11745312	2L_11745312_SNP [dm3] 2L_11745312_SNP [dm6]	C	T	6.270e^-5	0.637	UPSTREAM CR44144 DOWNSTREAM Vha100-5 INTERGENIC
2L	3572621	2L_3572621_SNP [dm3] 2L_3572621_SNP [dm6]	C	T	6.279e^-5	0.637	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	5011288	2L_5011288_SNP [dm3] 2L_5011288_SNP [dm6]	T	C	6.315e^-5	0.637	SYNONYMOUS_CODING CG3887 UPSTREAM CG31917 & 1 other DOWNSTREAM vkg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2L	4505634	2L_4505634_SNP [dm3] 2L_4505634_SNP [dm6]	G	A	6.345e^-5	0.637	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	8422697	X_8422697_SNP [dm3] X_8528664_SNP [dm6]	C	T	6.376e^-5	0.637	SYNONYMOUS_CODING PIP82 INTRON Nrg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12447409	2L_12447409_SNP [dm3] 2L_12447409_SNP [dm6]	A	G	6.401e^-5	0.637	INTRON CG5421
3L	17942380	3L_17942380_SNP [dm3] 3L_17949280_SNP [dm6]	G	A	6.443e^-5	0.637	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16965639	2R_16965639_SNP [dm3] 2R_21078134_SNP [dm6]	A	G	6.476e^-5	0.637	INTRON Treh
3R	26082543	3R_26082543_INS [dm3] 3R_30256821_INS [dm6]	A	ACGTA	6.488e^-5	0.637	INTERGENIC
2L	16295969	2L_16295969_SNP [dm3] 2L_16295969_SNP [dm6]	C	T	6.525e^-5	0.637	UTR_3_PRIME Cyp303a1 DOWNSTREAM heix
X	11437888	X_11437888_SNP [dm3] X_11543855_SNP [dm6]	G	T	6.554e^-5	0.637	INTRON Drak	TF binding site mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA
2L	3969859	2L_3969859_SNP [dm3] 2L_3969859_SNP [dm6]	A	T	6.602e^-5	0.637	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	4826539	2L_4826539_SNP [dm3] 2L_4826539_SNP [dm6]	C	G	6.632e^-5	0.637	SYNONYMOUS_CODING CG15628	TF binding site mE1_TFBS_cad
2L	7243890	2L_7243890_SNP [dm3] 2L_7243890_SNP [dm6]	A	C	6.670e^-5	0.637	INTRON Ndae1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	8239250	2L_8239250_SNP [dm3] 2L_8239250_SNP [dm6]	A	T	6.678e^-5	0.637	UTR_5_PRIME Pvr UPSTREAM Pvr INTRON Pvr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9075212	2L_9075212_SNP [dm3] 2L_9075212_SNP [dm6]	A	G	6.753e^-5	0.637	INTERGENIC
X	20873677	X_20873677_SNP [dm3] X_21002650_SNP [dm6]	C	T	6.793e^-5	0.637	INTERGENIC	transposable element FlyBase
2R	5405615	2R_5405615_SNP [dm3] 2R_9518110_SNP [dm6]	T	A	6.824e^-5	0.637	INTRON brp	TF binding site mE1_TFBS_HSA
3R	17528352	3R_17528352_SNP [dm3] 3R_21702630_SNP [dm6]	C	A	6.827e^-5	0.637	INTRON CG31176
3L	19580379	3L_19580379_SNP [dm3] 3L_19587279_SNP [dm6]	G	A	6.859e^-5	0.637	SYNONYMOUS_CODING CG9330	TF binding site mE1_TFBS_sens
2R	3070820	2R_3070820_SNP [dm3] 2R_7183315_SNP [dm6]	A	T	6.877e^-5	0.637	SYNONYMOUS_CODING CG30384 DOWNSTREAM CG30385 INTRON pk
3L	2184740	3L_2184740_SNP [dm3] 3L_2184740_SNP [dm6]	G	C	6.910e^-5	0.637	INTERGENIC
3L	9065419	3L_9065419_DEL [dm3] 3L_9072319_DEL [dm6]	TTGCTTGC	T	6.912e^-5	0.637	UPSTREAM CG4942 INTRON CG4911	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9327869	2L_9327869_SNP [dm3] 2L_9327869_SNP [dm6]	G	A	6.942e^-5	0.637	NON_SYNONYMOUS_CODING CG17005 DOWNSTREAM CR45457	TF binding site mE1_TFBS_cad
3R	9119864	3R_9119864_SNP [dm3] 3R_13294142_SNP [dm6]	A	G	7.102e^-5	0.637	UPSTREAM wntD & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	17106810	2R_17106810_SNP [dm3] 2R_21219305_SNP [dm6]	G	A	7.104e^-5	0.637	SPLICE_SITE_REGION ASPP INTRON ASPP	TF binding site mE1_TFBS_cad
2R	17106873	2R_17106873_SNP [dm3] 2R_21219368_SNP [dm6]	T	A	7.104e^-5	0.637	SPLICE_SITE_REGION ASPP INTRON ASPP	TF binding site mE1_TFBS_cad
2L	10073303	2L_10073303_SNP [dm3] 2L_10073303_SNP [dm6]	G	A	7.129e^-5	0.637	SYNONYMOUS_CODING CG44153
2L	14034480	2L_14034480_SNP [dm3] 2L_14034480_SNP [dm6]	T	C	7.145e^-5	0.637	EXON CR45284
3L	18022684	3L_18022684_SNP [dm3] 3L_18029584_SNP [dm6]	C	A	7.192e^-5	0.637	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	11600300	2L_11600300_SNP [dm3] 2L_11600300_SNP [dm6]	T	A	7.260e^-5	0.637	INTRON kek2
2L	14193921	2L_14193921_SNP [dm3] 2L_14193921_SNP [dm6]	C	T	7.275e^-5	0.637	INTRON Dyrk2	TF binding site mE1_TFBS_inv
3L	1040724	3L_1040724_SNP [dm3] 3L_1040724_SNP [dm6]	A	C	7.314e^-5	0.637	INTRON bab1
2L	10065475	2L_10065475_SNP [dm3] 2L_10065475_SNP [dm6]	G	A	7.332e^-5	0.637	INTRON CG44153	TF binding site mE1_TFBS_chinmo
2L	4831728	2L_4831728_SNP [dm3] 2L_4831728_SNP [dm6]	C	T	7.332e^-5	0.637	SYNONYMOUS_CODING Ir25a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19922198	2L_19922198_SNP [dm3] 2L_19922198_SNP [dm6]	A	C	7.340e^-5	0.637	UPSTREAM CR43827 DOWNSTREAM CR43828 INTRON sick
3L	1586810	3L_1586810_SNP [dm3] 3L_1586810_SNP [dm6]	G	A	7.355e^-5	0.637	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	12767678	X_12767678_SNP [dm3] X_12873645_SNP [dm6]	T	C	7.385e^-5	0.637	INTRON Pde9
X	6784585	X_6784585_SNP [dm3] X_6890552_SNP [dm6]	T	G	7.402e^-5	0.637	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3179127	2L_3179127_SNP [dm3] 2L_3179127_SNP [dm6]	A	G	7.409e^-5	0.637	INTRON CG34393
2L	4819792	2L_4819792_SNP [dm3] 2L_4819792_SNP [dm6]	G	A	7.422e^-5	0.637	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	20873386	X_20873386_SNP [dm3] X_21002359_SNP [dm6]	G	A	7.484e^-5	0.637	INTERGENIC
2L	11849953	2L_11849953_SNP [dm3] 2L_11849953_SNP [dm6]	C	T	7.546e^-5	0.637	UPSTREAM Mal-B2 DOWNSTREAM Mal-B1 INTRON Pde1c
2L	14193941	2L_14193941_DEL [dm3] 2L_14193941_DEL [dm6]	AATTTATCTCGTTA...	A	7.586e^-5	0.637	INTRON Dyrk2	TF binding site mE1_TFBS_inv
2L	14193960	2L_14193960_SNP [dm3] 2L_14193960_SNP [dm6]	C	A	7.586e^-5	0.637	INTRON Dyrk2	TF binding site mE1_TFBS_inv
2L	15027184	2L_15027184_SNP [dm3] 2L_15027184_SNP [dm6]	A	T	7.644e^-5	0.637	SYNONYMOUS_CODING CG33310 INTRON GABA-B-R1
2L	15027186	2L_15027186_SNP [dm3] 2L_15027186_SNP [dm6]	C	G	7.644e^-5	0.637	NON_SYNONYMOUS_CODING CG33310 INTRON GABA-B-R1
3R	26759591	3R_26759591_SNP [dm3] 3R_30933869_SNP [dm6]	A	G	7.680e^-5	0.637	INTERGENIC
2L	1102128	2L_1102128_SNP [dm3] 2L_1102128_SNP [dm6]	C	A	7.722e^-5	0.637	INTRON CG4629
2L	7243821	2L_7243821_SNP [dm3] 2L_7243821_SNP [dm6]	G	A	7.780e^-5	0.637	INTRON Ndae1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	12166179	3L_12166179_SNP [dm3] 3L_12173079_SNP [dm6]	C	T	7.786e^-5	0.637	INTRON Rh7
2R	7606037	2R_7606037_SNP [dm3] 2R_11718532_SNP [dm6]	G	A	7.890e^-5	0.637	INTRON pyr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11912253	2L_11912253_SNP [dm3] 2L_11912253_SNP [dm6]	C	A	7.969e^-5	0.637	INTRON Pde1c
2R	10808515	2R_10808515_INS [dm3] 2R_14921010_INS [dm6]	A	ATACTTTCATTCCTGCAGGT...	8.017e^-5	0.637	INTRON CG10249
2L	13601406	2L_13601406_SNP [dm3] 2L_13601406_SNP [dm6]	C	T	8.023e^-5	0.637	INTRON kuz
3L	9755796	3L_9755796_SNP [dm3] 3L_9762696_SNP [dm6]	C	T	8.090e^-5	0.637	UPSTREAM CG8177 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	14572457	2R_14572457_SNP [dm3] 2R_18684952_SNP [dm6]	G	C	8.093e^-5	0.637	NON_SYNONYMOUS_CODING CG44433 UPSTREAM CG44434 & 1 other	TF binding site mE1_TFBS_sens
3R	5117539	3R_5117539_SNP [dm3] 3R_9291817_SNP [dm6]	A	G	8.117e^-5	0.637	INTERGENIC
2L	6671122	2L_6671122_SNP [dm3] 2L_6671122_SNP [dm6]	T	A	8.208e^-5	0.637	UTR_3_PRIME Spn27A DOWNSTREAM Spn27A INTRON cup & 1 other
2L	11583302	2L_11583302_SNP [dm3] 2L_11583302_SNP [dm6]	G	C	8.228e^-5	0.637	INTRON kek2
2L	5423821	2L_5423821_SNP [dm3] 2L_5423821_SNP [dm6]	G	A	8.231e^-5	0.637	INTERGENIC
2R	10858733	2R_10858733_SNP [dm3] 2R_14971228_SNP [dm6]	G	A	8.232e^-5	0.637	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14573198	2R_14573198_SNP [dm3] 2R_18685693_SNP [dm6]	T	G	8.237e^-5	0.637	NON_SYNONYMOUS_CODING CG44433
2L	1106995	2L_1106995_SNP [dm3] 2L_1106995_SNP [dm6]	T	C	8.252e^-5	0.637	SYNONYMOUS_CODING mtRNApol	TF binding site mE1_TFBS_chinmo
3L	3575707	3L_3575707_SNP [dm3] 3L_3575707_SNP [dm6]	A	G	8.274e^-5	0.637	INTRON Eip63E
2L	11838965	2L_11838965_DEL [dm3] 2L_11838965_DEL [dm6]	CA	T	8.321e^-5	0.637	UPSTREAM Sfp33A3 DOWNSTREAM Sfp33A2 & 1 other INTRON Pde1c
2L	11850705	2L_11850705_SNP [dm3] 2L_11850705_SNP [dm6]	T	C	8.332e^-5	0.637	SYNONYMOUS_CODING Mal-B2 INTRON Pde1c
2R	18822483	2R_18822483_SNP [dm3] 2R_22934960_SNP [dm6]	A	G	8.345e^-5	0.637	UTR_3_PRIME CG3800 UPSTREAM CG3788	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	3582008	2L_3582008_SNP [dm3] 2L_3582008_SNP [dm6]	G	A	8.356e^-5	0.637	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
X	12359791	X_12359791_SNP [dm3] X_12465758_SNP [dm6]	G	A	8.421e^-5	0.637	INTRON CG42258
2L	3327725	2L_3327725_SNP [dm3] 2L_3327725_SNP [dm6]	T	C	8.520e^-5	0.637	UPSTREAM CG33282 INTERGENIC
2L	3327928	2L_3327928_SNP [dm3] 2L_3327928_SNP [dm6]	C	T	8.520e^-5	0.637	START_GAINED CG33282 UTR_5_PRIME CG33282
3L	9659568	3L_9659568_SNP [dm3] 3L_9666468_SNP [dm6]	A	C	8.569e^-5	0.637	INTRON fry
2L	3362361	2L_3362361_DEL [dm3] 2L_3362361_DEL [dm6]	AC	A	8.572e^-5	0.637	INTRON CG34394	TF binding site mE1_TFBS_cad
2L	11527972	2L_11527972_SNP [dm3] 2L_11527972_SNP [dm6]	C	T	8.621e^-5	0.637	INTRON CG31705
2L	965242	2L_965242_SNP [dm3] 2L_965242_SNP [dm6]	G	A	8.634e^-5	0.637	INTERGENIC
2R	17105358	2R_17105358_SNP [dm3] 2R_21217853_SNP [dm6]	T	A	8.642e^-5	0.637	UPSTREAM CG15661 DOWNSTREAM ASPP INTERGENIC
2L	11831878	2L_11831878_SNP [dm3] 2L_11831878_SNP [dm6]	C	G	8.677e^-5	0.637	INTRON Pde1c
2L	11640067	2L_11640067_SNP [dm3] 2L_11640067_SNP [dm6]	C	T	8.678e^-5	0.637	INTERGENIC
2R	1565132	2R_1565132_SNP [dm3] 2R_5677627_SNP [dm6]	G	A	8.716e^-5	0.637	UTR_3_PRIME scaf
3R	24606569	3R_24606569_SNP [dm3] 3R_28780847_SNP [dm6]	G	A	8.749e^-5	0.637	INTERGENIC
2L	12686458	2L_12686458_SNP [dm3] 2L_12686458_SNP [dm6]	C	A	8.816e^-5	0.637	DOWNSTREAM pdm2 INTERGENIC
2L	11584294	2L_11584294_SNP [dm3] 2L_11584294_SNP [dm6]	G	T	8.913e^-5	0.637	INTRON kek2
3L	9008103	3L_9008103_SNP [dm3] 3L_9015003_SNP [dm6]	T	C	8.930e^-5	0.637	INTRON Doc2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12768736	X_12768736_SNP [dm3] X_12874703_SNP [dm6]	A	T	8.952e^-5	0.637	INTRON Pde9
3L	15277184	3L_15277184_SNP [dm3] 3L_15284084_SNP [dm6]	A	C	8.969e^-5	0.637	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12153087	3L_12153087_SNP [dm3] 3L_12159987_SNP [dm6]	G	T	8.975e^-5	0.637	INTRON CG9760
2R	5128646	2R_5128646_SNP [dm3] 2R_9241141_SNP [dm6]	G	A	9.127e^-5	0.637	SYNONYMOUS_CODING Cyp4p1 INTRON hig
2L	11881876	2L_11881876_SNP [dm3] 2L_11881876_SNP [dm6]	T	C	9.132e^-5	0.637	INTRON Pde1c
3R	24611206	3R_24611206_SNP [dm3] 3R_28785484_SNP [dm6]	C	T	9.138e^-5	0.637	INTERGENIC
2L	8201220	2L_8201220_SNP [dm3] 2L_8201220_SNP [dm6]	C	G	9.157e^-5	0.637	NON_SYNONYMOUS_CODING SLC5A11 UPSTREAM CR44119 DOWNSTREAM PGAP5
X	20873384	X_20873384_SNP [dm3] X_21002357_SNP [dm6]	A	G	9.173e^-5	0.637	INTERGENIC
3R	21929137	3R_21929137_SNP [dm3] 3R_26103415_SNP [dm6]	T	C	9.182e^-5	0.637	INTERGENIC
3L	9065179	3L_9065179_SNP [dm3] 3L_9072079_SNP [dm6]	T	A	9.184e^-5	0.637	INTRON CG4911	TF binding site BDTNP1_TFBS_dl
2R	10858742	2R_10858742_SNP [dm3] 2R_14971237_SNP [dm6]	T	A	9.265e^-5	0.637	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	3223758	2R_3223758_SNP [dm3] 2R_7336253_SNP [dm6]	G	A	9.277e^-5	0.637	SYNONYMOUS_CODING Dscam1 INTRON Dscam1	TF binding site mE1_TFBS_cad
2R	10858740	2R_10858740_SNP [dm3] 2R_14971235_SNP [dm6]	G	A	9.357e^-5	0.637	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18022680	3L_18022680_SNP [dm3] 3L_18029580_SNP [dm6]	A	C	9.365e^-5	0.637	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	10073078	2L_10073078_SNP [dm3] 2L_10073078_SNP [dm6]	C	T	9.395e^-5	0.637	INTRON CG44153	TF binding site mE1_TFBS_inv
2L	13884715	2L_13884715_SNP [dm3] 2L_13884715_SNP [dm6]	G	A	9.454e^-5	0.637	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	2856776	2L_2856776_SNP [dm3] 2L_2856776_SNP [dm6]	C	A	9.471e^-5	0.637	UTR_3_PRIME RpS21 UPSTREAM CG3104 & 1 other DOWNSTREAM RpS21	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
2L	2856783	2L_2856783_SNP [dm3] 2L_2856783_SNP [dm6]	A	C	9.471e^-5	0.637	UTR_3_PRIME RpS21 UPSTREAM CG2991 DOWNSTREAM RpS21	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
2R	12537063	2R_12537063_SNP [dm3] 2R_16649558_SNP [dm6]	G	A	9.499e^-5	0.637	UTR_3_PRIME gprs DOWNSTREAM gprs INTRON gprs
3R	10882029	3R_10882029_SNP [dm3] 3R_15056307_SNP [dm6]	G	A	9.501e^-5	0.637	UTR_3_PRIME dpr9 DOWNSTREAM dpr9
2R	1191916	2R_1191916_SNP [dm3] 2R_5304411_SNP [dm6]	G	C	9.558e^-5	0.637	INTERGENIC
2L	4417004	2L_4417004_SNP [dm3] 2L_4417004_SNP [dm6]	T	G	9.616e^-5	0.637	INTRON CG15431	TF binding site mE1_TFBS_chinmo
2L	11481172	2L_11481172_SNP [dm3] 2L_11481172_SNP [dm6]	A	G	9.624e^-5	0.637	INTERGENIC	TF binding site mE1_TFBS_cad
2L	11887268	2L_11887268_SNP [dm3] 2L_11887268_SNP [dm6]	C	A	9.690e^-5	0.637	INTRON Pde1c
X	2566478	X_2566478_SNP [dm3] X_2672445_SNP [dm6]	T	G	9.707e^-5	0.637	INTRON sgg
2L	19914141	2L_19914141_SNP [dm3] 2L_19914141_SNP [dm6]	A	C	9.732e^-5	0.637	UPSTREAM Victoria INTRON sick
2R	1195551	2R_1195551_SNP [dm3] 2R_5308046_SNP [dm6]	A	G	9.770e^-5	0.637	INTRON sxc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2R	1191402	2R_1191402_SNP [dm3] 2R_5303897_SNP [dm6]	G	C	9.815e^-5	0.637	INTERGENIC
3L	9943000	3L_9943000_SNP [dm3] 3L_9949900_SNP [dm6]	A	G	9.843e^-5	0.637	INTRON CG34356
2L	19882504	2L_19882504_SNP [dm3] 2L_19882504_SNP [dm6]	G	A	9.844e^-5	0.637	INTRON sick
X	8208153	X_8208153_SNP [dm3] X_8314120_SNP [dm6]	T	G	9.894e^-5	0.637	INTRON nAChRalpha3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	11585770	3R_11585770_SNP [dm3] 3R_15760048_SNP [dm6]	T	G	9.934e^-5	0.637	INTERGENIC
X	4090156	X_4090156_SNP [dm3] X_4196123_SNP [dm6]	A	T	1.001e^-4	0.637	INTRON Fas2
2R	10273336	2R_10273336_SNP [dm3] 2R_14385831_SNP [dm6]	T	A	1.008e^-4	0.637	DOWNSTREAM Dh44-R1 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	4347682	2L_4347682_DEL [dm3] 2L_4347682_DEL [dm6]	AA	A	1.009e^-4	0.637	UPSTREAM CR44698 EXON CR44697	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26751855	3R_26751855_SNP [dm3] 3R_30926133_SNP [dm6]	T	A	1.010e^-4	0.637	INTRON Ptx1	TF binding site BDTNP1_TFBS_twi
2L	3330014	2L_3330014_SNP [dm3] 2L_3330014_SNP [dm6]	T	C	1.017e^-4	0.637	UPSTREAM CG3285 DOWNSTREAM CG33282 INTERGENIC
3R	15133399	3R_15133399_SNP [dm3] 3R_19307677_SNP [dm6]	T	A	1.019e^-4	0.637	INTRON Dl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4005871	2L_4005871_SNP [dm3] 2L_4005871_SNP [dm6]	A	G	1.019e^-4	0.637	UPSTREAM CG15423 DOWNSTREAM CG15422 INTERGENIC
2L	3491974	2L_3491974_SNP [dm3] 2L_3491974_SNP [dm6]	C	G	1.019e^-4	0.637	UPSTREAM CG15414 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	11854973	2L_11854973_SNP [dm3] 2L_11854973_SNP [dm6]	G	C	1.019e^-4	0.637	INTRON Pde1c	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	1345001	2R_1345001_SNP [dm3] 2R_5457496_SNP [dm6]	T	C	1.019e^-4	0.637	INTERGENIC	transposable element FlyBase
3R	24673050	3R_24673050_SNP [dm3] 3R_28847328_SNP [dm6]	A	T	1.030e^-4	0.641	INTRON spg
2L	3572554	2L_3572554_SNP [dm3] 2L_3572554_SNP [dm6]	C	T	1.032e^-4	0.641	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	16752458	3R_16752458_SNP [dm3] 3R_20926736_SNP [dm6]	T	A	1.041e^-4	0.642	INTRON CG31191 & 1 other
2L	11537779	2L_11537779_SNP [dm3] 2L_11537779_SNP [dm6]	T	C	1.042e^-4	0.642	DOWNSTREAM CG43438 INTERGENIC
3R	27273822	3R_27273822_SNP [dm3] 3R_31448100_SNP [dm6]	C	T	1.047e^-4	0.642	INTRON Gprk2
2L	11491225	2L_11491225_SNP [dm3] 2L_11491225_SNP [dm6]	C	T	1.048e^-4	0.642	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	15165997	X_15165997_INS [dm3] X_15271964_INS [dm6]	A	AAGTA	1.056e^-4	0.645	INTRON CG9106
2L	12686467	2L_12686467_SNP [dm3] 2L_12686467_SNP [dm6]	T	A	1.069e^-4	0.648	DOWNSTREAM pdm2 INTERGENIC
2R	20866676	2R_20866676_INS [dm3] 2R_24979153_INS [dm6]	T	TGCCAAGAGAACTT...	1.070e^-4	0.648	INTRON emp	TF binding site mE1_TFBS_cad
2L	3969849	2L_3969849_SNP [dm3] 2L_3969849_SNP [dm6]	C	G	1.079e^-4	0.648	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	14193956	2L_14193956_SNP [dm3] 2L_14193956_SNP [dm6]	A	G	1.084e^-4	0.648	INTRON Dyrk2	TF binding site mE1_TFBS_inv
2L	11646512	2L_11646512_SNP [dm3] 2L_11646512_SNP [dm6]	G	A	1.086e^-4	0.648	INTRON CG6614
3L	8216566	3L_8216566_SNP [dm3] 3L_8223466_SNP [dm6]	C	T	1.098e^-4	0.648	DOWNSTREAM CG13678 INTERGENIC	TF binding site mE1_TFBS_cad
3R	25008199	3R_25008199_SNP [dm3] 3R_29182477_SNP [dm6]	C	G	1.100e^-4	0.648	INTRON CG14509
X	3485116	X_3485116_SNP [dm3] X_3591083_SNP [dm6]	G	T	1.106e^-4	0.648	INTRON AstA-R1
2L	8202014	2L_8202014_SNP [dm3] 2L_8202014_SNP [dm6]	G	A	1.118e^-4	0.648	SYNONYMOUS_CODING SLC5A11 EXON CR44119
3R	4099937	3R_4099937_SNP [dm3] 3R_8274215_SNP [dm6]	C	A	1.120e^-4	0.648	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_sens
2L	4855076	2L_4855076_SNP [dm3] 2L_4855076_SNP [dm6]	T	C	1.126e^-4	0.648	INTRON pog	TF binding site mE1_TFBS_HSA
2R	10858681	2R_10858681_SNP [dm3] 2R_14971176_SNP [dm6]	C	T	1.133e^-4	0.648	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18207916	X_18207916_SNP [dm3] X_18313883_SNP [dm6]	A	G	1.133e^-4	0.648	DOWNSTREAM CG6023 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2L	14033316	2L_14033316_SNP [dm3] 2L_14033316_SNP [dm6]	T	A	1.133e^-4	0.648	EXON CR45284
3R	5656414	3R_5656414_SNP [dm3] 3R_9830692_SNP [dm6]	C	G	1.135e^-4	0.648	INTRON Teh1
3R	27258896	3R_27258896_SNP [dm3] 3R_31433174_SNP [dm6]	A	T	1.140e^-4	0.648	INTRON Gprk2
2L	12486320	2L_12486320_SNP [dm3] 2L_12486320_SNP [dm6]	G	A	1.149e^-4	0.648	INTRON bun
3R	27267216	3R_27267216_SNP [dm3] 3R_31441494_SNP [dm6]	G	A	1.159e^-4	0.648	INTRON Gprk2
2L	3346838	2L_3346838_SNP [dm3] 2L_3346838_SNP [dm6]	C	T	1.163e^-4	0.648	INTRON E23
2L	16293033	2L_16293033_SNP [dm3] 2L_16293033_SNP [dm6]	C	T	1.165e^-4	0.648	UPSTREAM CG13258 DOWNSTREAM CR44899 INTERGENIC
2R	13140739	2R_13140739_SNP [dm3] 2R_17253234_SNP [dm6]	G	A	1.167e^-4	0.648	DOWNSTREAM CR43660 INTRON mbl	TF binding site BDTNP1_TFBS_twi
2R	12537072	2R_12537072_DEL [dm3] 2R_16649567_DEL [dm6]	GGTGTCTG	G	1.168e^-4	0.648	UTR_3_PRIME gprs DOWNSTREAM gprs INTRON gprs
2L	11577868	2L_11577868_SNP [dm3] 2L_11577868_SNP [dm6]	C	T	1.177e^-4	0.648	INTERGENIC
X	19863646	X_19863646_SNP [dm3] X_19969613_SNP [dm6]	C	A	1.188e^-4	0.648	DOWNSTREAM Nep3 INTERGENIC
2L	11849836	2L_11849836_SNP [dm3] 2L_11849836_SNP [dm6]	T	A	1.189e^-4	0.648	UPSTREAM Mal-B2 DOWNSTREAM Mal-B1 INTRON Pde1c
2L	9089570	2L_9089570_SNP [dm3] 2L_9089570_SNP [dm6]	T	A	1.192e^-4	0.648	DOWNSTREAM Toll-4 INTERGENIC
3R	27268074	3R_27268074_DEL [dm3] 3R_31442352_DEL [dm6]	CCA	G	1.199e^-4	0.648	INTRON Gprk2
2R	14533929	2R_14533929_SNP [dm3] 2R_18646424_SNP [dm6]	C	A	1.208e^-4	0.648	INTRON SP2637
2L	11882943	2L_11882943_SNP [dm3] 2L_11882943_SNP [dm6]	T	G	1.209e^-4	0.648	INTRON Pde1c
3R	5956730	3R_5956730_SNP [dm3] 3R_10131008_SNP [dm6]	C	T	1.212e^-4	0.648	INTRON tws
2L	11827290	2L_11827290_SNP [dm3] 2L_11827290_SNP [dm6]	A	T	1.213e^-4	0.648	UTR_3_PRIME esc INTRON Pde1c
3L	18013436	3L_18013436_SNP [dm3] 3L_18020336_SNP [dm6]	T	A	1.218e^-4	0.648	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl
2L	4427637	2L_4427637_SNP [dm3] 2L_4427637_SNP [dm6]	C	A	1.221e^-4	0.648	INTRON CG15431
3R	26570638	3R_26570638_SNP [dm3] 3R_30744916_SNP [dm6]	G	A	1.222e^-4	0.648	SYNONYMOUS_CODING Npc2g DOWNSTREAM CG15543 & 1 other	TF binding site mE1_TFBS_cad
3R	26867071	3R_26867071_SNP [dm3] 3R_31041349_SNP [dm6]	A	T	1.228e^-4	0.648	INTRON CanA1
3R	22991462	3R_22991462_SNP [dm3] 3R_27165740_SNP [dm6]	A	G	1.230e^-4	0.648	START_GAINED spn-D UTR_5_PRIME spn-D UPSTREAM CG34293 DOWNSTREAM ppk31	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu
3L	15670212	3L_15670212_INS [dm3] 3L_15677112_INS [dm6]	A	AGAGCG	1.230e^-4	0.648	INTERGENIC
2L	1921063	2L_1921063_SNP [dm3] 2L_1921063_SNP [dm6]	T	G	1.234e^-4	0.648	INTRON CG7337
X	16727425	X_16727425_SNP [dm3] X_16833392_SNP [dm6]	A	C	1.235e^-4	0.648	INTRON CG13004
3L	10300313	3L_10300313_SNP [dm3] 3L_10307213_SNP [dm6]	C	T	1.240e^-4	0.648	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	19219797	X_19219797_SNP [dm3] X_19325764_SNP [dm6]	G	A	1.251e^-4	0.648	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_zfh1
2L	12128093	2L_12128093_SNP [dm3] 2L_12128093_SNP [dm6]	A	T	1.261e^-4	0.648	NON_SYNONYMOUS_CODING CG17211	TF binding site mE1_TFBS_HSA
3R	27274267	3R_27274267_SNP [dm3] 3R_31448545_SNP [dm6]	C	T	1.267e^-4	0.648	INTRON Gprk2
2L	3319666	2L_3319666_SNP [dm3] 2L_3319666_SNP [dm6]	A	G	1.268e^-4	0.648	NON_SYNONYMOUS_CODING CG3326 UPSTREAM CG8837	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16429067	X_16429067_SNP [dm3] X_16535034_SNP [dm6]	G	T	1.273e^-4	0.648	INTERGENIC
3R	5685992	3R_5685992_SNP [dm3] 3R_9860270_SNP [dm6]	A	G	1.275e^-4	0.648	INTRON Teh1
3R	25815834	3R_25815834_SNP [dm3] 3R_29990112_SNP [dm6]	C	T	1.275e^-4	0.648	SYNONYMOUS_CODING CG7896	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15859924	3L_15859924_SNP [dm3] 3L_15866824_SNP [dm6]	G	T	1.277e^-4	0.648	INTRON pHCl
3L	12520555	3L_12520555_DEL [dm3] 3L_12527455_DEL [dm6]	AAA	A	1.282e^-4	0.648	UTR_3_PRIME nst UPSTREAM eIF-2beta
2L	4409420	2L_4409420_SNP [dm3] 2L_4409420_SNP [dm6]	G	A	1.282e^-4	0.648	INTRON CG15431	TF binding site mE1_TFBS_chinmo
X	18209212	X_18209212_SNP [dm3] X_18315179_SNP [dm6]	G	A	1.285e^-4	0.648	SYNONYMOUS_CODING CG6023 UTR_5_PRIME CG6023	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	27267245	3R_27267245_SNP [dm3] 3R_31441523_SNP [dm6]	T	C	1.286e^-4	0.648	INTRON Gprk2
2R	1181104	2R_1181104_SNP [dm3] 2R_5293599_SNP [dm6]	G	A	1.287e^-4	0.648	UPSTREAM d4 INTRON d4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	11839372	2L_11839372_SNP [dm3] 2L_11839372_SNP [dm6]	T	C	1.290e^-4	0.648	UPSTREAM Sfp33A3 INTRON Pde1c EXON CR43937
3L	7520693	3L_7520693_SNP [dm3] 3L_7527593_SNP [dm6]	T	C	1.291e^-4	0.648	UTR_3_PRIME ltl	TF binding site BDTNP1_TFBS_dl
3R	26867078	3R_26867078_SNP [dm3] 3R_31041356_SNP [dm6]	A	G	1.292e^-4	0.648	INTRON CanA1
2L	2859519	2L_2859519_SNP [dm3] 2L_2859519_SNP [dm6]	C	A	1.293e^-4	0.648	INTRON CG2991
2L	1721773	2L_1721773_SNP [dm3] 2L_1721773_SNP [dm6]	G	A	1.322e^-4	0.648	INTRON Rim2
2L	12359148	2L_12359148_DEL [dm3] 2L_12359148_DEL [dm6]	TACCGGC	T	1.326e^-4	0.648	INTRON bru-2
3L	1575770	3L_1575770_INS [dm3] 3L_1575770_INS [dm6]	A	AGAA	1.328e^-4	0.648	UTR_3_PRIME CG12004 UPSTREAM CG13917 DOWNSTREAM CG12004	TF binding site BDTNP1_TFBS_dl
2L	11485760	2L_11485760_SNP [dm3] 2L_11485760_SNP [dm6]	G	A	1.329e^-4	0.648	SPLICE_SITE_REGION CG43355 & 1 other UTR_3_PRIME CG43355 UPSTREAM sala INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	4363084	2L_4363084_SNP [dm3] 2L_4363084_SNP [dm6]	C	A	1.329e^-4	0.648	DOWNSTREAM CR45363 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	11287236	2L_11287236_SNP [dm3] 2L_11287236_SNP [dm6]	C	T	1.330e^-4	0.648	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	12200814	3L_12200814_SNP [dm3] 3L_12207714_SNP [dm6]	G	T	1.332e^-4	0.648	SYNONYMOUS_CODING app UTR_3_PRIME app	TF binding site mE1_TFBS_cad
2L	11912709	2L_11912709_SNP [dm3] 2L_11912709_SNP [dm6]	C	G	1.334e^-4	0.648	INTRON Pde1c
2L	5877498	2L_5877498_SNP [dm3] 2L_5877498_SNP [dm6]	C	T	1.335e^-4	0.648	INTRON rau	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5877500	2L_5877500_SNP [dm3] 2L_5877500_SNP [dm6]	C	T	1.335e^-4	0.648	INTRON rau	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4409789	2L_4409789_SNP [dm3] 2L_4409789_SNP [dm6]	T	C	1.335e^-4	0.648	INTRON CG15431
2L	11591851	2L_11591851_SNP [dm3] 2L_11591851_SNP [dm6]	A	T	1.342e^-4	0.648	UPSTREAM Acp33A INTRON kek2
2L	11591794	2L_11591794_SNP [dm3] 2L_11591794_SNP [dm6]	T	G	1.342e^-4	0.648	UPSTREAM Acp33A INTRON kek2
2L	7462995	2L_7462995_SNP [dm3] 2L_7462995_SNP [dm6]	G	T	1.347e^-4	0.648	UPSTREAM Gr28b INTERGENIC
3R	20371714	3R_20371714_SNP [dm3] 3R_24545992_SNP [dm6]	T	A	1.358e^-4	0.648	INTRON Esyt2
2L	3179101	2L_3179101_SNP [dm3] 2L_3179101_SNP [dm6]	T	A	1.358e^-4	0.648	INTRON CG34393
2R	5190616	2R_5190616_SNP [dm3] 2R_9303111_SNP [dm6]	T	C	1.362e^-4	0.648	UTR_3_PRIME Myd88 DOWNSTREAM Drep-2 & 1 other
2L	3338440	2L_3338440_SNP [dm3] 2L_3338440_SNP [dm6]	C	G	1.362e^-4	0.648	SPLICE_SITE_REGION E23 INTRON E23
3R	27267873	3R_27267873_SNP [dm3] 3R_31442151_SNP [dm6]	C	T	1.365e^-4	0.648	INTRON Gprk2
2L	18632568	2L_18632568_DEL [dm3] 2L_18632568_DEL [dm6]	TCATTTTTTA	T	1.367e^-4	0.648	INTRON MESR3
2R	10858718	2R_10858718_SNP [dm3] 2R_14971213_SNP [dm6]	A	T	1.370e^-4	0.648	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	27260015	3R_27260015_SNP [dm3] 3R_31434293_SNP [dm6]	G	T	1.376e^-4	0.648	INTRON Gprk2
2L	11875774	2L_11875774_SNP [dm3] 2L_11875774_SNP [dm6]	T	C	1.379e^-4	0.648	INTRON Pde1c
X	12765670	X_12765670_SNP [dm3] X_12871637_SNP [dm6]	T	C	1.381e^-4	0.648	INTRON Pde9	TF binding site mE1_TFBS_sbb
X	19455531	X_19455531_SNP [dm3] X_19561498_SNP [dm6]	T	A	1.393e^-4	0.648	UTR_3_PRIME Grip84 UPSTREAM mir-979 DOWNSTREAM mir-978
2L	12404330	2L_12404330_SNP [dm3] 2L_12404330_SNP [dm6]	A	T	1.398e^-4	0.648	INTRON vir-1
3L	6723117	3L_6723117_SNP [dm3] 3L_6730017_SNP [dm6]	C	G	1.399e^-4	0.648	UTR_3_PRIME dikar DOWNSTREAM dikar	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	22506853	3R_22506853_SNP [dm3] 3R_26681131_SNP [dm6]	G	A	1.400e^-4	0.648	INTRON beat-VII
2L	15771494	2L_15771494_SNP [dm3] 2L_15771494_SNP [dm6]	C	T	1.401e^-4	0.648	SYNONYMOUS_CODING CG31826 UPSTREAM Ku80	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
2L	13990932	2L_13990932_SNP [dm3] 2L_13990932_SNP [dm6]	A	G	1.403e^-4	0.648	SYNONYMOUS_CODING rk
2L	14038438	2L_14038438_SNP [dm3] 2L_14038438_SNP [dm6]	C	T	1.404e^-4	0.648	UPSTREAM CR45284 INTERGENIC	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_cad
3L	11059940	3L_11059940_SNP [dm3] 3L_11066840_SNP [dm6]	A	C	1.406e^-4	0.648	NON_SYNONYMOUS_CODING SuUR UTR_3_PRIME CG45101
2L	11186266	2L_11186266_SNP [dm3] 2L_11186266_SNP [dm6]	A	G	1.408e^-4	0.648	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	6087709	2R_6087709_SNP [dm3] 2R_10200204_SNP [dm6]	G	C	1.411e^-4	0.648	UPSTREAM CG34221 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6087713	2R_6087713_SNP [dm3] 2R_10200208_SNP [dm6]	C	T	1.411e^-4	0.648	UPSTREAM CG34221 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4831737	2L_4831737_SNP [dm3] 2L_4831737_SNP [dm6]	C	T	1.412e^-4	0.648	SYNONYMOUS_CODING Ir25a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6087612	2R_6087612_SNP [dm3] 2R_10200107_SNP [dm6]	G	A	1.417e^-4	0.648	UPSTREAM CG34221 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12446714	2L_12446714_SNP [dm3] 2L_12446714_SNP [dm6]	G	A	1.417e^-4	0.648	UPSTREAM Oatp33Ea INTRON CG5421
2L	16319021	2L_16319021_SNP [dm3] 2L_16319021_SNP [dm6]	A	C	1.423e^-4	0.648	INTRON cact	TF binding site BDTNP1_TFBS_twi
X	14993100	X_14993100_SNP [dm3] X_15099067_SNP [dm6]	A	C	1.424e^-4	0.648	INTRON Rab3-GEF
X	8942245	X_8942245_SNP [dm3] X_9048212_SNP [dm6]	C	A	1.426e^-4	0.648	INTRON CR43836 & 1 other	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	14993088	X_14993088_SNP [dm3] X_15099055_SNP [dm6]	C	T	1.431e^-4	0.648	INTRON Rab3-GEF
3L	6690724	3L_6690724_SNP [dm3] 3L_6697624_SNP [dm6]	A	C	1.434e^-4	0.648	INTRON SP1173
2L	12404329	2L_12404329_SNP [dm3] 2L_12404329_SNP [dm6]	A	C	1.436e^-4	0.648	INTRON vir-1
2L	12404340	2L_12404340_SNP [dm3] 2L_12404340_SNP [dm6]	A	T	1.436e^-4	0.648	INTRON vir-1
3R	27268063	3R_27268063_DEL [dm3] 3R_31442341_DEL [dm6]	TTAATTAATC	T	1.440e^-4	0.648	INTRON Gprk2
X	19863566	X_19863566_SNP [dm3] X_19969533_SNP [dm6]	T	A	1.450e^-4	0.648	DOWNSTREAM Nep3 INTERGENIC
2L	5883126	2L_5883126_SNP [dm3] 2L_5883126_SNP [dm6]	G	A	1.454e^-4	0.648	UPSTREAM CG44574 INTERGENIC
2L	12153325	2L_12153325_SNP [dm3] 2L_12153325_SNP [dm6]	G	A	1.455e^-4	0.648	INTRON CG31760
3R	12869880	3R_12869880_SNP [dm3] 3R_17044158_SNP [dm6]	G	C	1.459e^-4	0.648	SYNONYMOUS_CODING Patr-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2R	17712507	2R_17712507_SNP [dm3] 2R_21825002_SNP [dm6]	G	T	1.466e^-4	0.648	SYNONYMOUS_CODING CG13492	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	4619622	2L_4619622_SNP [dm3] 2L_4619622_SNP [dm6]	A	G	1.467e^-4	0.648	EXON CR44609
3R	24487292	3R_24487292_DEL [dm3] 3R_28661570_DEL [dm6]	CC	C	1.471e^-4	0.648	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	18885536	2R_18885536_SNP [dm3] 2R_22998013_SNP [dm6]	A	G	1.472e^-4	0.648	INTRON twi & 1 other
3R	26867106	3R_26867106_SNP [dm3] 3R_31041384_SNP [dm6]	C	A	1.472e^-4	0.648	INTRON CanA1
3L	10447279	3L_10447279_SNP [dm3] 3L_10454179_SNP [dm6]	C	A	1.474e^-4	0.648	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	889166	X_889166_SNP [dm3] X_995133_SNP [dm6]	A	C	1.476e^-4	0.648	INTERGENIC
2L	2913780	2L_2913780_INS [dm3] 2L_2913780_INS [dm6]	T	TGT	1.483e^-4	0.648	INTRON lilli
2L	15768157	2L_15768157_SNP [dm3] 2L_15768157_SNP [dm6]	G	C	1.486e^-4	0.648	SYNONYMOUS_CODING wek DOWNSTREAM Ku80	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	11667930	2L_11667930_SNP [dm3] 2L_11667930_SNP [dm6]	T	C	1.495e^-4	0.648	INTERGENIC
2R	5128644	2R_5128644_SNP [dm3] 2R_9241139_SNP [dm6]	C	A	1.503e^-4	0.648	NON_SYNONYMOUS_CODING Cyp4p1 INTRON hig
3R	21456557	3R_21456557_SNP [dm3] 3R_25630835_SNP [dm6]	A	G	1.506e^-4	0.648	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4375137	2L_4375137_SNP [dm3] 2L_4375137_SNP [dm6]	A	G	1.506e^-4	0.648	INTRON Traf4	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	26749984	3R_26749984_INS [dm3] 3R_30924262_INS [dm6]	A	ACATATAAC	1.507e^-4	0.648	INTRON Ptx1
2L	15299224	2L_15299224_SNP [dm3] 2L_15299224_SNP [dm6]	T	C	1.509e^-4	0.648	SYNONYMOUS_CODING CG15262
3L	10218174	3L_10218174_SNP [dm3] 3L_10225074_SNP [dm6]	T	G	1.510e^-4	0.648	UTR_5_PRIME scramb1	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	15621286	2L_15621286_SNP [dm3] 2L_15621286_SNP [dm6]	A	G	1.514e^-4	0.648	DOWNSTREAM Or35a INTERGENIC
3R	25537710	3R_25537710_SNP [dm3] 3R_29711988_SNP [dm6]	G	A	1.517e^-4	0.648	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	24794887	3R_24794887_SNP [dm3] 3R_28969165_SNP [dm6]	T	C	1.517e^-4	0.648	INTRON CG14521
2L	3319710	2L_3319710_SNP [dm3] 2L_3319710_SNP [dm6]	G	A	1.522e^-4	0.648	UPSTREAM CG8837 INTRON CG3326	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3R	1449606	3R_1449606_SNP [dm3] 3R_5623884_SNP [dm6]	G	A	1.522e^-4	0.648	UTR_5_PRIME Spec2 & 1 other UPSTREAM CG2911 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	2287557	2L_2287557_SNP [dm3] 2L_2287557_SNP [dm6]	A	G	1.523e^-4	0.648	SYNONYMOUS_CODING CG42658 UPSTREAM CG31681 DOWNSTREAM CG17237
2L	4409777	2L_4409777_SNP [dm3] 2L_4409777_SNP [dm6]	A	G	1.527e^-4	0.648	INTRON CG15431
2R	12537060	2R_12537060_SNP [dm3] 2R_16649555_SNP [dm6]	T	C	1.530e^-4	0.648	UTR_3_PRIME gprs DOWNSTREAM gprs INTRON gprs
2L	6836643	2L_6836643_DEL [dm3] 2L_6836643_DEL [dm6]	AT	A	1.530e^-4	0.648	INTRON sens-2
2L	4820139	2L_4820139_SNP [dm3] 2L_4820139_SNP [dm6]	G	A	1.535e^-4	0.648	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	2455652	X_2455652_SNP [dm3] X_2561619_SNP [dm6]	A	G	1.535e^-4	0.648	INTRON Pdfr
3L	16884599	3L_16884599_SNP [dm3] 3L_16891499_SNP [dm6]	A	T	1.536e^-4	0.648	INTRON Lmpt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	13140646	2R_13140646_SNP [dm3] 2R_17253141_SNP [dm6]	A	C	1.539e^-4	0.648	DOWNSTREAM CR43660 INTRON mbl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6951942	X_6951942_SNP [dm3] X_7057909_SNP [dm6]	G	T	1.539e^-4	0.648	INTRON CG12541	TF binding site BDTNP1_TFBS_prd
3R	25784150	3R_25784150_SNP [dm3] 3R_29958428_SNP [dm6]	A	T	1.540e^-4	0.648	INTRON TkR99D
2L	13632164	2L_13632164_SNP [dm3] 2L_13632164_SNP [dm6]	G	C	1.541e^-4	0.648	DOWNSTREAM CR43410 INTRON kuz
3L	15277110	3L_15277110_SNP [dm3] 3L_15284010_SNP [dm6]	A	T	1.546e^-4	0.649	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11582768	2L_11582768_DEL [dm3] 2L_11582768_DEL [dm6]	AA	A	1.566e^-4	0.655	UTR_5_PRIME kek2	TF binding site BDTNP1_TFBS_dl
3L	6690725	3L_6690725_SNP [dm3] 3L_6697625_SNP [dm6]	G	A	1.567e^-4	0.655	INTRON SP1173
X	18207862	X_18207862_SNP [dm3] X_18313829_SNP [dm6]	G	T	1.583e^-4	0.657	DOWNSTREAM CG6023 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	3222921	2R_3222921_SNP [dm3] 2R_7335416_SNP [dm6]	T	A	1.585e^-4	0.657	DOWNSTREAM CR45129 INTRON Dscam1	TF binding site mE1_TFBS_cad
2L	11353959	2L_11353959_DEL [dm3] 2L_11353959_DEL [dm6]	ATTA	A	1.586e^-4	0.657	UPSTREAM CR44586 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27268038	3R_27268038_DEL [dm3] 3R_31442316_DEL [dm6]	TATATATTGCTCATGGCTTG...	T	1.589e^-4	0.657	INTRON Gprk2
3L	9755309	3L_9755309_SNP [dm3] 3L_9762209_SNP [dm6]	T	C	1.592e^-4	0.657	DOWNSTREAM CR45407 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	12244958	X_12244958_SNP [dm3] X_12350925_SNP [dm6]	T	G	1.594e^-4	0.657	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	13577721	2R_13577721_SNP [dm3] 2R_17690216_SNP [dm6]	C	G	1.599e^-4	0.657	UTR_3_PRIME HPS4 DOWNSTREAM swi2
3L	10162316	3L_10162316_SNP [dm3] 3L_10169216_SNP [dm6]	G	A	1.602e^-4	0.657	INTRON dpr10
2R	13140700	2R_13140700_SNP [dm3] 2R_17253195_SNP [dm6]	T	G	1.604e^-4	0.657	DOWNSTREAM CR43660 INTRON mbl	TF binding site BDTNP1_TFBS_twi
3R	26762212	3R_26762212_SNP [dm3] 3R_30936490_SNP [dm6]	G	T	1.616e^-4	0.66	UTR_5_PRIME CG15549 DOWNSTREAM CG15550	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10073360	2L_10073360_SNP [dm3] 2L_10073360_SNP [dm6]	G	A	1.618e^-4	0.66	NON_SYNONYMOUS_CODING CG44153
2R	17535344	2R_17535344_SNP [dm3] 2R_21647839_SNP [dm6]	C	T	1.623e^-4	0.66	INTRON CG10082	TF binding site BDTNP1_TFBS_dl
2L	4825861	2L_4825861_SNP [dm3] 2L_4825861_SNP [dm6]	A	T	1.627e^-4	0.66	INTRON CG15628
2L	11591790	2L_11591790_SNP [dm3] 2L_11591790_SNP [dm6]	T	A	1.632e^-4	0.661	UPSTREAM Acp33A INTRON kek2
2R	10858752	2R_10858752_SNP [dm3] 2R_14971247_SNP [dm6]	A	G	1.640e^-4	0.661	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4818567	2L_4818567_SNP [dm3] 2L_4818567_SNP [dm6]	T	G	1.641e^-4	0.661	UPSTREAM mir-4910 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	3963524	2L_3963524_SNP [dm3] 2L_3963524_SNP [dm6]	A	T	1.642e^-4	0.661	INTRON fred	TF binding site mE1_TFBS_bab1
2L	16295349	2L_16295349_SNP [dm3] 2L_16295349_SNP [dm6]	G	A	1.649e^-4	0.661	SYNONYMOUS_CODING Cyp303a1 DOWNSTREAM heix	TF binding site mE1_TFBS_sens
2L	3513479	2L_3513479_SNP [dm3] 2L_3513479_SNP [dm6]	G	A	1.650e^-4	0.661	SPLICE_SITE_REGION CG33123 INTRON CG33123	TF binding site mE1_TFBS_cad
3L	9948239	3L_9948239_SNP [dm3] 3L_9955139_SNP [dm6]	T	A	1.657e^-4	0.663	INTRON CG34356
2R	4619018	2R_4619018_SNP [dm3] 2R_8731513_SNP [dm6]	A	C	1.662e^-4	0.663	SYNONYMOUS_CODING stmA	TF binding site mE1_TFBS_sens
2L	4825649	2L_4825649_SNP [dm3] 2L_4825649_SNP [dm6]	C	T	1.668e^-4	0.664	NON_SYNONYMOUS_CODING CG15628
2R	3223527	2R_3223527_SNP [dm3] 2R_7336022_SNP [dm6]	A	G	1.676e^-4	0.664	DOWNSTREAM CR45129 INTRON Dscam1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1936536	2L_1936536_SNP [dm3] 2L_1936536_SNP [dm6]	C	T	1.683e^-4	0.664	SYNONYMOUS_CODING CG7337	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3572481	2L_3572481_SNP [dm3] 2L_3572481_SNP [dm6]	T	A	1.684e^-4	0.664	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2697623	3L_2697623_SNP [dm3] 3L_2697623_SNP [dm6]	T	C	1.687e^-4	0.664	INTRON Fife
2L	4409402	2L_4409402_SNP [dm3] 2L_4409402_SNP [dm6]	G	A	1.690e^-4	0.664	INTRON CG15431	TF binding site mE1_TFBS_chinmo
3L	9948240	3L_9948240_SNP [dm3] 3L_9955140_SNP [dm6]	A	T	1.694e^-4	0.664	INTRON CG34356
3R	26759858	3R_26759858_SNP [dm3] 3R_30934136_SNP [dm6]	T	G	1.696e^-4	0.664	INTERGENIC
3L	6373575	3L_6373575_SNP [dm3] 3L_6380475_SNP [dm6]	C	A	1.699e^-4	0.664	INTERGENIC
3L	4061669	3L_4061669_SNP [dm3] 3L_4061669_SNP [dm6]	G	T	1.699e^-4	0.664	NON_SYNONYMOUS_CODING CG18869 UPSTREAM dib	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
3R	25247391	3R_25247391_SNP [dm3] 3R_29421669_SNP [dm6]	A	G	1.702e^-4	0.664	INTRON Ptp99A
3R	26570686	3R_26570686_SNP [dm3] 3R_30744964_SNP [dm6]	C	T	1.709e^-4	0.664	SYNONYMOUS_CODING Npc2g DOWNSTREAM CG15543 & 1 other	TF binding site mE1_TFBS_cad
2R	3228420	2R_3228420_SNP [dm3] 2R_7340915_SNP [dm6]	T	A	1.716e^-4	0.664	INTRON Dscam1
2L	12686464	2L_12686464_SNP [dm3] 2L_12686464_SNP [dm6]	C	T	1.722e^-4	0.664	DOWNSTREAM pdm2 INTERGENIC
2L	2822714	2L_2822714_SNP [dm3] 2L_2822714_SNP [dm6]	T	C	1.731e^-4	0.664	DOWNSTREAM CG3123 INTRON Duox
3L	10721868	3L_10721868_DEL [dm3] 3L_10728768_DEL [dm6]	GA	G	1.732e^-4	0.664	INTERGENIC
3L	12165044	3L_12165044_SNP [dm3] 3L_12171944_SNP [dm6]	G	A	1.741e^-4	0.664	INTRON Rh7
2L	18653183	2L_18653183_SNP [dm3] 2L_18653183_SNP [dm6]	C	A	1.743e^-4	0.664	UPSTREAM Cyp310a1 INTRON MESR3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9226433	2L_9226433_SNP [dm3] 2L_9226433_SNP [dm6]	T	C	1.743e^-4	0.664	INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1099702	2L_1099702_SNP [dm3] 2L_1099702_SNP [dm6]	C	T	1.744e^-4	0.664	INTRON CG4629
2L	3096302	2L_3096302_INS [dm3] 2L_3096302_INS [dm6]	A	AA	1.748e^-4	0.664	INTRON toc	TF binding site mE1_TFBS_Trl
2L	11814909	2L_11814909_SNP [dm3] 2L_11814909_SNP [dm6]	C	T	1.748e^-4	0.664	UTR_3_PRIME Pde1c DOWNSTREAM Pde1c
2R	11004778	2R_11004778_SNP [dm3] 2R_15117273_SNP [dm6]	T	A	1.749e^-4	0.664	INTRON chn	TF binding site BDTNP1_TFBS_dl
X	2631477	X_2631477_SNP [dm3] X_2737444_SNP [dm6]	A	C	1.752e^-4	0.664	INTRON crm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12119013	2L_12119013_SNP [dm3] 2L_12119013_SNP [dm6]	A	T	1.768e^-4	0.664	INTRON CG17211
2R	3082230	2R_3082230_SNP [dm3] 2R_7194725_SNP [dm6]	G	C	1.769e^-4	0.664	INTRON pk
3R	27267269	3R_27267269_SNP [dm3] 3R_31441547_SNP [dm6]	G	A	1.771e^-4	0.664	INTRON Gprk2
2R	4343454	2R_4343454_SNP [dm3] 2R_8455949_SNP [dm6]	T	C	1.776e^-4	0.664	SYNONYMOUS_CODING Mal-A3 DOWNSTREAM Mal-A2
2L	1105942	2L_1105942_SNP [dm3] 2L_1105942_SNP [dm6]	C	T	1.778e^-4	0.664	SYNONYMOUS_CODING mtRNApol	TF binding site mE1_TFBS_cad
2R	19587821	2R_19587821_SNP [dm3] 2R_23700298_SNP [dm6]	T	C	1.778e^-4	0.664	SPLICE_SITE_REGION CG4091 SYNONYMOUS_CODING CG4091
2L	3143905	2L_3143905_SNP [dm3] 2L_3143905_SNP [dm6]	T	G	1.783e^-4	0.664	INTRON toc
2R	8642781	2R_8642781_SNP [dm3] 2R_12755276_SNP [dm6]	G	A	1.784e^-4	0.664	START_GAINED Taz UTR_5_PRIME Taz UPSTREAM Taz INTRON Taz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	9989607	3L_9989607_INS [dm3] 3L_9996507_INS [dm6]	C	TT	1.791e^-4	0.664	INTRON dpr6
2L	3499443	2L_3499443_SNP [dm3] 2L_3499443_SNP [dm6]	A	G	1.793e^-4	0.664	INTRON tim	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5654976	3L_5654976_SNP [dm3] 3L_5661876_SNP [dm6]	T	G	1.802e^-4	0.664	NON_SYNONYMOUS_CODING Sse INTRON sif	TF binding site BDTNP1_TFBS_dl
3L	15667445	3L_15667445_SNP [dm3] 3L_15674345_SNP [dm6]	G	A	1.802e^-4	0.664	INTERGENIC
2L	11406142	2L_11406142_SNP [dm3] 2L_11406142_SNP [dm6]	A	G	1.805e^-4	0.664	INTERGENIC	regulatory region REDfly_CRMs
3R	26759177	3R_26759177_SNP [dm3] 3R_30933455_SNP [dm6]	C	A	1.807e^-4	0.664	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	12359050	2L_12359050_SNP [dm3] 2L_12359050_SNP [dm6]	G	A	1.812e^-4	0.664	INTRON bru-2
3R	14972953	3R_14972953_SNP [dm3] 3R_19147231_SNP [dm6]	C	T	1.813e^-4	0.664	SYNONYMOUS_CODING Ppcs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3R	14470081	3R_14470081_SNP [dm3] 3R_18644359_SNP [dm6]	G	C	1.813e^-4	0.664	INTRON qin
2L	7363682	2L_7363682_DEL [dm3] 2L_7363682_DEL [dm6]	AATAGAA	TT	1.816e^-4	0.664	UTR_5_PRIME Wnt10
X	15513616	X_15513616_SNP [dm3] X_15619583_SNP [dm6]	T	G	1.817e^-4	0.664	INTRON sog	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	11838308	2L_11838308_SNP [dm3] 2L_11838308_SNP [dm6]	G	A	1.824e^-4	0.664	DOWNSTREAM Sfp33A4 & 2 others INTRON Pde1c
X	18256723	X_18256723_INS [dm3] X_18362690_INS [dm6]	T	TT	1.833e^-4	0.664	DOWNSTREAM CG6106 INTERGENIC
2L	2743802	2L_2743802_SNP [dm3] 2L_2743802_SNP [dm6]	T	C	1.838e^-4	0.664	NON_SYNONYMOUS_CODING CG9961 UTR_3_PRIME CG9961 DOWNSTREAM Hrs	TF binding site mE1_TFBS_sens
X	5663550	X_5663550_SNP [dm3] X_5769517_SNP [dm6]	C	T	1.838e^-4	0.664	INTRON CG42699 & 1 other
2L	3675089	2L_3675089_INS [dm3] 2L_3675089_INS [dm6]	T	TTGAGATTC	1.839e^-4	0.664	INTRON CG34340
2L	3675119	2L_3675119_SNP [dm3] 2L_3675119_SNP [dm6]	T	A	1.839e^-4	0.664	INTRON CG34340
2L	4186653	2L_4186653_SNP [dm3] 2L_4186653_SNP [dm6]	G	A	1.840e^-4	0.664	SYNONYMOUS_CODING CG31961 DOWNSTREAM CR44057	TF binding site mE1_TFBS_sens
2L	3865465	2L_3865465_SNP [dm3] 2L_3865465_SNP [dm6]	C	T	1.855e^-4	0.668	INTRON CG3964
2R	10858729	2R_10858729_SNP [dm3] 2R_14971224_SNP [dm6]	C	A	1.862e^-4	0.668	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25300884	3R_25300884_SNP [dm3] 3R_29475162_SNP [dm6]	A	C	1.868e^-4	0.668	INTRON Ptp99A
2L	15759067	2L_15759067_SNP [dm3] 2L_15759067_SNP [dm6]	T	C	1.869e^-4	0.668	SYNONYMOUS_CODING Gli	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	4242548	2R_4242548_SNP [dm3] 2R_8355043_SNP [dm6]	C	A	1.869e^-4	0.668	INTRON pdm3
2L	4688200	2L_4688200_SNP [dm3] 2L_4688200_SNP [dm6]	C	T	1.873e^-4	0.668	SYNONYMOUS_CODING Elba3 DOWNSTREAM CG11929 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	6784571	X_6784571_SNP [dm3] X_6890538_SNP [dm6]	T	A	1.886e^-4	0.668	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14007208	2L_14007208_SNP [dm3] 2L_14007208_SNP [dm6]	C	G	1.891e^-4	0.668	UPSTREAM CG42692 INTERGENIC
2R	10809405	2R_10809405_SNP [dm3] 2R_14921900_SNP [dm6]	G	A	1.897e^-4	0.668	INTRON CG10249
2L	20033284	2L_20033284_SNP [dm3] 2L_20033284_SNP [dm6]	C	T	1.903e^-4	0.668	INTRON sNPF
3L	1636610	3L_1636610_SNP [dm3] 3L_1636610_SNP [dm6]	C	T	1.908e^-4	0.668	INTRON nSyb	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	3226624	2R_3226624_SNP [dm3] 2R_7339119_SNP [dm6]	A	G	1.911e^-4	0.668	SYNONYMOUS_CODING Dscam1 INTRON Dscam1
2L	1124853	2L_1124853_SNP [dm3] 2L_1124853_SNP [dm6]	G	A	1.912e^-4	0.668	INTRON Pino
X	13626758	X_13626758_SNP [dm3] X_13732725_SNP [dm6]	G	C	1.915e^-4	0.668	INTRON g
2R	17100559	2R_17100559_SNP [dm3] 2R_21213054_SNP [dm6]	A	G	1.920e^-4	0.668	SYNONYMOUS_CODING CG4302 DOWNSTREAM CG44245
3R	8710425	3R_8710425_SNP [dm3] 3R_12884703_SNP [dm6]	G	A	1.925e^-4	0.668	INTERGENIC
2L	11827361	2L_11827361_SNP [dm3] 2L_11827361_SNP [dm6]	T	A	1.926e^-4	0.668	UTR_3_PRIME esc INTRON Pde1c	TF binding site mE1_TFBS_cad
2L	14444637	2L_14444637_SNP [dm3] 2L_14444637_SNP [dm6]	T	G	1.927e^-4	0.668	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11471520	2L_11471520_SNP [dm3] 2L_11471520_SNP [dm6]	G	T	1.931e^-4	0.668	INTERGENIC	TF binding site mE1_TFBS_cad
2L	10549766	2L_10549766_SNP [dm3] 2L_10549766_SNP [dm6]	T	C	1.937e^-4	0.668	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	15904328	2L_15904328_SNP [dm3] 2L_15904328_SNP [dm6]	T	C	1.938e^-4	0.668	DOWNSTREAM beat-Ib INTERGENIC
2R	14534397	2R_14534397_SNP [dm3] 2R_18646892_SNP [dm6]	C	T	1.951e^-4	0.668	INTRON SP2637
2L	11871832	2L_11871832_SNP [dm3] 2L_11871832_SNP [dm6]	C	T	1.951e^-4	0.668	INTRON Pde1c
2R	3037126	2R_3037126_SNP [dm3] 2R_7149621_SNP [dm6]	T	G	1.955e^-4	0.668	NON_SYNONYMOUS_CODING CG12828 UPSTREAM CR44200 DOWNSTREAM Spn43Aa	TF binding site mE1_TFBS_Trl
3L	5569839	3L_5569839_SNP [dm3] 3L_5576739_SNP [dm6]	T	G	1.962e^-4	0.668	INTRON Msr-110
2L	1156760	2L_1156760_SNP [dm3] 2L_1156760_SNP [dm6]	C	A	1.963e^-4	0.668	UPSTREAM capt INTRON capt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	1873710	3R_1873710_SNP [dm3] 3R_6047988_SNP [dm6]	G	A	1.966e^-4	0.668	INTERGENIC
2L	3721625	2L_3721625_SNP [dm3] 2L_3721625_SNP [dm6]	A	C	1.968e^-4	0.668	INTRON Shaw
2L	4436499	2L_4436499_SNP [dm3] 2L_4436499_SNP [dm6]	C	T	1.970e^-4	0.668	INTRON CG15431
3R	27513292	3R_27513292_SNP [dm3] 3R_31687570_SNP [dm6]	C	T	1.976e^-4	0.668	DOWNSTREAM CR45564 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	6714220	2L_6714220_SNP [dm3] 2L_6714220_SNP [dm6]	T	A	1.979e^-4	0.668	INTRON AkhR
2L	11553468	2L_11553468_SNP [dm3] 2L_11553468_SNP [dm6]	C	A	1.981e^-4	0.668	INTERGENIC
2L	1921230	2L_1921230_SNP [dm3] 2L_1921230_SNP [dm6]	T	A	1.986e^-4	0.668	INTRON CG7337
X	14133412	X_14133412_SNP [dm3] X_14239379_SNP [dm6]	G	A	1.991e^-4	0.668	SYNONYMOUS_CODING CG1434 DOWNSTREAM mRNA-cap	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	12839490	2R_12839490_SNP [dm3] 2R_16951985_SNP [dm6]	T	C	1.996e^-4	0.668	UTR_5_PRIME CG34191 UPSTREAM CG34191 & 1 other INTRON mute	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_inv
3R	5661871	3R_5661871_SNP [dm3] 3R_9836149_SNP [dm6]	C	T	1.999e^-4	0.668	INTRON Teh1
2L	10562754	2L_10562754_SNP [dm3] 2L_10562754_SNP [dm6]	T	C	2.004e^-4	0.668	INTRON Trim9
3R	26547396	3R_26547396_DEL [dm3] 3R_30721674_DEL [dm6]	TATT	T	2.015e^-4	0.668	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11352976	3L_11352976_SNP [dm3] 3L_11359876_SNP [dm6]	C	A	2.021e^-4	0.668	INTERGENIC
X	3950633	X_3950633_SNP [dm3] X_4056600_SNP [dm6]	G	A	2.023e^-4	0.668	INTERGENIC
2L	12118791	2L_12118791_SNP [dm3] 2L_12118791_SNP [dm6]	A	C	2.027e^-4	0.668	INTRON CG17211	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9209000	3L_9209000_SNP [dm3] 3L_9215900_SNP [dm6]	G	A	2.033e^-4	0.668	DOWNSTREAM CG4476 INTERGENIC
3L	14329175	3L_14329175_SNP [dm3] 3L_14336075_SNP [dm6]	C	A	2.037e^-4	0.668	INTRON fz
3L	15630240	3L_15630240_SNP [dm3] 3L_15637140_SNP [dm6]	T	C	2.041e^-4	0.668	INTRON comm3	TF binding site BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA
2L	11858673	2L_11858673_SNP [dm3] 2L_11858673_SNP [dm6]	A	C	2.051e^-4	0.668	INTRON Pde1c
2L	568539	2L_568539_SNP [dm3] 2L_568539_SNP [dm6]	G	A	2.053e^-4	0.668	UPSTREAM Nle INTRON CG2807	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	11662245	2L_11662245_SNP [dm3] 2L_11662245_SNP [dm6]	A	G	2.053e^-4	0.668	UPSTREAM CR44479 EXON CR44480
2L	11528007	2L_11528007_SNP [dm3] 2L_11528007_SNP [dm6]	T	C	2.058e^-4	0.668	INTRON CG31705
2L	11528008	2L_11528008_SNP [dm3] 2L_11528008_SNP [dm6]	A	T	2.058e^-4	0.668	INTRON CG31705
2L	11480483	2L_11480483_SNP [dm3] 2L_11480483_SNP [dm6]	A	C	2.060e^-4	0.668	INTERGENIC	TF binding site mE1_TFBS_cad
2R	3228392	2R_3228392_SNP [dm3] 2R_7340887_SNP [dm6]	G	T	2.063e^-4	0.668	INTRON Dscam1
2L	2589332	2L_2589332_SNP [dm3] 2L_2589332_SNP [dm6]	C	T	2.065e^-4	0.668	INTERGENIC
2L	21364374	2L_21364374_SNP [dm3] 2L_21364374_SNP [dm6]	A	C	2.068e^-4	0.668	NON_SYNONYMOUS_CODING dtr
3L	1040741	3L_1040741_SNP [dm3] 3L_1040741_SNP [dm6]	C	A	2.070e^-4	0.668	INTRON bab1
3L	7422473	3L_7422473_SNP [dm3] 3L_7429373_SNP [dm6]	T	A	2.076e^-4	0.668	INTRON CG42458
2L	2285138	2L_2285138_SNP [dm3] 2L_2285138_SNP [dm6]	T	C	2.083e^-4	0.668	UPSTREAM CG4271 & 1 other DOWNSTREAM CG31681 INTERGENIC
2L	19861130	2L_19861130_SNP [dm3] 2L_19861130_SNP [dm6]	C	G	2.083e^-4	0.668	INTRON sick
X	6297380	X_6297380_SNP [dm3] X_6403347_SNP [dm6]	G	C	2.085e^-4	0.668	INTERGENIC
3R	9554079	3R_9554079_SNP [dm3] 3R_13728357_SNP [dm6]	A	G	2.087e^-4	0.668	INTRON CG34383
3L	12163511	3L_12163511_SNP [dm3] 3L_12170411_SNP [dm6]	A	T	2.087e^-4	0.668	INTRON Rh7
2L	16300125	2L_16300125_SNP [dm3] 2L_16300125_SNP [dm6]	G	A	2.092e^-4	0.668	UPSTREAM CG17328 & 1 other INTRON CG17328	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	9726644	2L_9726644_SNP [dm3] 2L_9726644_SNP [dm6]	T	A	2.096e^-4	0.668	INTRON Nckx30C
3L	1793987	3L_1793987_SNP [dm3] 3L_1793987_SNP [dm6]	T	C	2.096e^-4	0.668	INTRON alpha-Spec & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	5405651	2R_5405651_SNP [dm3] 2R_9518146_SNP [dm6]	T	C	2.097e^-4	0.668	INTRON brp	TF binding site mE1_TFBS_HSA
2L	9726637	2L_9726637_SNP [dm3] 2L_9726637_SNP [dm6]	A	G	2.101e^-4	0.668	INTRON Nckx30C
2L	11353940	2L_11353940_SNP [dm3] 2L_11353940_SNP [dm6]	G	T	2.111e^-4	0.668	UPSTREAM CR44586 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9726655	2L_9726655_SNP [dm3] 2L_9726655_SNP [dm6]	C	T	2.116e^-4	0.668	INTRON Nckx30C
3L	11552492	3L_11552492_SNP [dm3] 3L_11559392_SNP [dm6]	C	T	2.122e^-4	0.668	UPSTREAM Mob2 INTRON Mob2
X	20042548	X_20042548_DEL [dm3] X_20148515_DEL [dm6]	AA	A	2.127e^-4	0.668	INTRON CG9572
3R	9666782	3R_9666782_SNP [dm3] 3R_13841060_SNP [dm6]	A	G	2.137e^-4	0.668	INTERGENIC
2L	4830099	2L_4830099_SNP [dm3] 2L_4830099_SNP [dm6]	A	G	2.139e^-4	0.668	SYNONYMOUS_CODING CG2976 UPSTREAM mir-4912 DOWNSTREAM Ir25a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	21691465	2L_21691465_SNP [dm3] 2L_21691465_SNP [dm6]	A	C	2.140e^-4	0.668	INTRON CG31619
2L	11849866	2L_11849866_SNP [dm3] 2L_11849866_SNP [dm6]	G	A	2.145e^-4	0.668	UPSTREAM Mal-B2 DOWNSTREAM Mal-B1 INTRON Pde1c
2R	2896318	2R_2896318_SNP [dm3] 2R_7008813_SNP [dm6]	G	A	2.146e^-4	0.668	DOWNSTREAM Tsp42Ed & 1 other INTERGENIC
3L	10627133	3L_10627133_SNP [dm3] 3L_10634033_SNP [dm6]	C	A	2.149e^-4	0.668	DOWNSTREAM E_z_ & 1 other INTRON CG34001
2L	9726630	2L_9726630_SNP [dm3] 2L_9726630_SNP [dm6]	G	A	2.150e^-4	0.668	INTRON Nckx30C
X	18207926	X_18207926_SNP [dm3] X_18313893_SNP [dm6]	C	G	2.150e^-4	0.668	DOWNSTREAM CG6023 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
X	18207967	X_18207967_SNP [dm3] X_18313934_SNP [dm6]	T	G	2.150e^-4	0.668	DOWNSTREAM CG6023 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	18207986	X_18207986_SNP [dm3] X_18313953_SNP [dm6]	T	C	2.150e^-4	0.668	DOWNSTREAM CG6023 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	21811868	2L_21811868_SNP [dm3] 2L_21811868_SNP [dm6]	G	A	2.156e^-4	0.668	INTERGENIC
2L	4347754	2L_4347754_SNP [dm3] 2L_4347754_SNP [dm6]	G	A	2.158e^-4	0.668	UPSTREAM CR44698 EXON CR44697	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
2R	1072483	2R_1072483_SNP [dm3] 2R_5184978_SNP [dm6]	A	G	2.167e^-4	0.668	INTRON Nipped-A
2R	3062166	2R_3062166_SNP [dm3] 2R_7174661_SNP [dm6]	G	A	2.168e^-4	0.668	INTRON pk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14974195	3R_14974195_SNP [dm3] 3R_19148473_SNP [dm6]	G	A	2.176e^-4	0.668	UPSTREAM Ppcs & 1 other DOWNSTREAM CG5835 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	10454332	3L_10454332_SNP [dm3] 3L_10461232_SNP [dm6]	G	A	2.179e^-4	0.668	SYNONYMOUS_CODING Gem3
3L	9056909	3L_9056909_SNP [dm3] 3L_9063809_SNP [dm6]	G	T	2.180e^-4	0.668	UPSTREAM Argk INTRON Argk	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
2L	12119045	2L_12119045_SNP [dm3] 2L_12119045_SNP [dm6]	G	A	2.182e^-4	0.668	INTRON CG17211
2L	4818538	2L_4818538_SNP [dm3] 2L_4818538_SNP [dm6]	C	T	2.183e^-4	0.668	UPSTREAM mir-4910 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	20200889	3R_20200889_SNP [dm3] 3R_24375167_SNP [dm6]	A	G	2.183e^-4	0.668	INTRON CG17781
2L	5423879	2L_5423879_SNP [dm3] 2L_5423879_SNP [dm6]	A	C	2.194e^-4	0.668	INTERGENIC
3R	17756551	3R_17756551_DEL [dm3] 3R_21930829_DEL [dm6]	TC	T	2.195e^-4	0.668	INTERGENIC
2R	3095292	2R_3095292_SNP [dm3] 2R_7207787_SNP [dm6]	A	C	2.198e^-4	0.668	INTRON pk
2L	11729438	2L_11729438_SNP [dm3] 2L_11729438_SNP [dm6]	G	T	2.200e^-4	0.668	INTERGENIC	TF binding site mE1_TFBS_inv
2L	11710859	2L_11710859_SNP [dm3] 2L_11710859_SNP [dm6]	T	C	2.212e^-4	0.668	INTERGENIC
3L	5282708	3L_5282708_SNP [dm3] 3L_5289608_SNP [dm6]	G	T	2.222e^-4	0.668	INTERGENIC
X	4412898	X_4412898_SNP [dm3] X_4518865_SNP [dm6]	A	G	2.223e^-4	0.668	INTRON CR32773	TF binding site mE1_TFBS_inv
2L	4826194	2L_4826194_SNP [dm3] 2L_4826194_SNP [dm6]	C	G	2.226e^-4	0.668	INTRON CG15628
2L	7254597	2L_7254597_SNP [dm3] 2L_7254597_SNP [dm6]	C	A	2.234e^-4	0.668	DOWNSTREAM Wnt4 INTERGENIC
3L	5654975	3L_5654975_SNP [dm3] 3L_5661875_SNP [dm6]	G	A	2.235e^-4	0.668	SYNONYMOUS_CODING Sse INTRON sif	TF binding site BDTNP1_TFBS_dl
2L	2950491	2L_2950491_SNP [dm3] 2L_2950491_SNP [dm6]	C	T	2.235e^-4	0.668	SYNONYMOUS_CODING lilli	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3091506	2L_3091506_SNP [dm3] 2L_3091506_SNP [dm6]	T	G	2.245e^-4	0.668	UPSTREAM toc INTRON toc	TF binding site mE1_TFBS_HSA
2R	13612630	2R_13612630_SNP [dm3] 2R_17725125_SNP [dm6]	C	T	2.245e^-4	0.668	UTR_3_PRIME Snx16 DOWNSTREAM CG10933	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2734163	2L_2734163_SNP [dm3] 2L_2734163_SNP [dm6]	T	C	2.246e^-4	0.668	INTRON CG31689
X	8752724	X_8752724_INS [dm3] X_8858691_INS [dm6]	T	TT	2.248e^-4	0.668	INTRON CG12075
2L	8223917	2L_8223917_SNP [dm3] 2L_8223917_SNP [dm6]	T	C	2.248e^-4	0.668	SYNONYMOUS_CODING Pvr
2L	3607854	2L_3607854_SNP [dm3] 2L_3607854_SNP [dm6]	A	G	2.250e^-4	0.668	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	2631489	X_2631489_SNP [dm3] X_2737456_SNP [dm6]	G	A	2.254e^-4	0.668	INTRON crm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	2631496	X_2631496_SNP [dm3] X_2737463_SNP [dm6]	G	T	2.254e^-4	0.668	SPLICE_SITE_REGION crm INTRON crm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1723409	2L_1723409_SNP [dm3] 2L_1723409_SNP [dm6]	A	C	2.263e^-4	0.668	INTRON Rim2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	17941895	3L_17941895_DEL [dm3] 3L_17948795_DEL [dm6]	CT	C	2.264e^-4	0.668	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	10890964	3R_10890964_SNP [dm3] 3R_15065242_SNP [dm6]	A	C	2.266e^-4	0.668	INTRON dpr9
2L	20902688	2L_20902688_SNP [dm3] 2L_20902688_SNP [dm6]	T	A	2.266e^-4	0.668	INTRON sky & 1 other	TF binding site mE1_TFBS_Trl
2R	5197204	2R_5197204_INS [dm3] 2R_9309699_INS [dm6]	T	TT	2.273e^-4	0.668	UTR_3_PRIME CG13954 & 1 other UPSTREAM Myd88
X	15890620	X_15890620_SNP [dm3] X_15996587_SNP [dm6]	A	T	2.282e^-4	0.668	UPSTREAM CG8939 DOWNSTREAM exd INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25812334	3R_25812334_SNP [dm3] 3R_29986612_SNP [dm6]	G	A	2.284e^-4	0.668	SYNONYMOUS_CODING CG7896	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	12165005	3L_12165005_SNP [dm3] 3L_12171905_SNP [dm6]	C	T	2.289e^-4	0.668	INTRON Rh7
2L	6900499	2L_6900499_SNP [dm3] 2L_6900499_SNP [dm6]	G	T	2.297e^-4	0.668	INTRON Nlg2
2L	11296262	2L_11296262_SNP [dm3] 2L_11296262_SNP [dm6]	T	A	2.300e^-4	0.668	INTERGENIC
3L	12180804	3L_12180804_SNP [dm3] 3L_12187704_SNP [dm6]	C	T	2.304e^-4	0.668	UTR_3_PRIME CG6910	regulatory region REDfly_CRMs
2L	19236735	2L_19236735_SNP [dm3] 2L_19236735_SNP [dm6]	T	G	2.304e^-4	0.668	INTERGENIC
2R	3082245	2R_3082245_SNP [dm3] 2R_7194740_SNP [dm6]	T	C	2.308e^-4	0.668	INTRON pk
X	18207990	X_18207990_SNP [dm3] X_18313957_SNP [dm6]	T	C	2.310e^-4	0.668	DOWNSTREAM CG6023 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	11827291	2L_11827291_SNP [dm3] 2L_11827291_SNP [dm6]	A	T	2.311e^-4	0.668	UTR_3_PRIME esc INTRON Pde1c
2L	9881792	2L_9881792_SNP [dm3] 2L_9881792_SNP [dm6]	C	A	2.322e^-4	0.668	INTRON nAChRalpha6
2L	12566537	2L_12566537_SNP [dm3] 2L_12566537_SNP [dm6]	C	T	2.325e^-4	0.668	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	14026000	2L_14026000_SNP [dm3] 2L_14026000_SNP [dm6]	G	A	2.330e^-4	0.668	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3R	13669646	3R_13669646_SNP [dm3] 3R_17843924_SNP [dm6]	A	T	2.335e^-4	0.668	INTRON tinc
X	2631487	X_2631487_SNP [dm3] X_2737454_SNP [dm6]	A	C	2.340e^-4	0.668	INTRON crm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	20902697	2L_20902697_INS [dm3] 2L_20902697_INS [dm6]	G	GTTG	2.346e^-4	0.668	INTRON sky & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	2357884	3L_2357884_SNP [dm3] 3L_2357884_SNP [dm6]	G	T	2.347e^-4	0.668	INTERGENIC
2L	3963762	2L_3963762_SNP [dm3] 2L_3963762_SNP [dm6]	C	T	2.353e^-4	0.668	INTRON fred
X	19219792	X_19219792_SNP [dm3] X_19325759_SNP [dm6]	G	A	2.359e^-4	0.668	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_zfh1
3L	567634	3L_567634_SNP [dm3] 3L_567634_SNP [dm6]	T	C	2.360e^-4	0.668	INTRON hipk
X	16567003	X_16567003_SNP [dm3] X_16672970_SNP [dm6]	T	C	2.360e^-4	0.668	UTR_5_PRIME CG13012 INTRON CG13012
2L	16293813	2L_16293813_SNP [dm3] 2L_16293813_SNP [dm6]	G	A	2.362e^-4	0.668	UPSTREAM CG13258 & 2 others INTERGENIC
3L	15661759	3L_15661759_SNP [dm3] 3L_15668659_SNP [dm6]	G	T	2.366e^-4	0.668	INTERGENIC
3R	26762326	3R_26762326_SNP [dm3] 3R_30936604_SNP [dm6]	T	G	2.367e^-4	0.668	UTR_3_PRIME CG15550 UPSTREAM CG15549	TF binding site mE1_TFBS_chinmo
X	4412901	X_4412901_SNP [dm3] X_4518868_SNP [dm6]	G	A	2.373e^-4	0.668	INTRON CR32773	TF binding site mE1_TFBS_inv
3L	9660994	3L_9660994_SNP [dm3] 3L_9667894_SNP [dm6]	A	C	2.391e^-4	0.668	INTRON fry
3L	12199280	3L_12199280_SNP [dm3] 3L_12206180_SNP [dm6]	C	T	2.397e^-4	0.668	UPSTREAM CG5626 DOWNSTREAM app INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2R	13569427	2R_13569427_SNP [dm3] 2R_17681922_SNP [dm6]	G	A	2.400e^-4	0.668	INTRON Sema-1b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
2L	21753994	2L_21753994_SNP [dm3] 2L_21753994_SNP [dm6]	A	G	2.402e^-4	0.668	UPSTREAM step INTRON step	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14974193	3R_14974193_SNP [dm3] 3R_19148471_SNP [dm6]	A	G	2.406e^-4	0.668	UPSTREAM Ppcs & 1 other DOWNSTREAM CG5835 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	15364016	2L_15364016_SNP [dm3] 2L_15364016_SNP [dm6]	T	C	2.407e^-4	0.668	INTERGENIC
3L	10300303	3L_10300303_SNP [dm3] 3L_10307203_SNP [dm6]	C	T	2.408e^-4	0.668	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	11382743	2L_11382743_SNP [dm3] 2L_11382743_SNP [dm6]	G	A	2.411e^-4	0.668	INTERGENIC	regulatory region REDfly_CRMs
2L	22164344	2L_22164344_SNP [dm3] 2L_22164344_SNP [dm6]	C	T	2.413e^-4	0.668	UTR_3_PRIME CG42748
X	17327144	X_17327144_SNP [dm3] X_17433111_SNP [dm6]	C	T	2.415e^-4	0.668	INTRON CG12994
2L	11849745	2L_11849745_SNP [dm3] 2L_11849745_SNP [dm6]	G	A	2.416e^-4	0.668	UPSTREAM Mal-B2 DOWNSTREAM Mal-B1 INTRON Pde1c
2L	13239346	2L_13239346_INS [dm3] 2L_13239346_INS [dm6]	A	AATGTGTA	2.417e^-4	0.668	UPSTREAM CG5945 DOWNSTREAM CG5867 INTERGENIC
X	8273136	X_8273136_SNP [dm3] X_8379103_SNP [dm6]	A	T	2.420e^-4	0.668	INTERGENIC
3L	7633093	3L_7633093_SNP [dm3] 3L_7639993_SNP [dm6]	C	T	2.426e^-4	0.668	DOWNSTREAM CG33275 & 2 others INTRON CG33276	TF binding site mE1_TFBS_Ubx
3R	8707599	3R_8707599_SNP [dm3] 3R_12881877_SNP [dm6]	G	T	2.427e^-4	0.668	INTERGENIC
2R	14617165	2R_14617165_SNP [dm3] 2R_18729660_SNP [dm6]	C	T	2.435e^-4	0.668	INTRON Hs3st-A & 1 other
3R	27017856	3R_27017856_SNP [dm3] 3R_31192134_SNP [dm6]	A	T	2.438e^-4	0.668	INTRON mesh	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3L	7322202	3L_7322202_SNP [dm3] 3L_7329102_SNP [dm6]	A	T	2.440e^-4	0.668	UPSTREAM mus312 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	12838201	2R_12838201_SNP [dm3] 2R_16950696_SNP [dm6]	A	G	2.444e^-4	0.668	INTRON mute	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12168256	3L_12168256_SNP [dm3] 3L_12175156_SNP [dm6]	G	C	2.445e^-4	0.668	UTR_5_PRIME Rh7	TF binding site BDTNP1_TFBS_da
3L	12162682	3L_12162682_SNP [dm3] 3L_12169582_SNP [dm6]	G	A	2.448e^-4	0.668	INTRON Rh7
2L	4815939	2L_4815939_SNP [dm3] 2L_4815939_SNP [dm6]	C	G	2.451e^-4	0.668	UTR_3_PRIME CG3225 DOWNSTREAM CG15629
2L	4816848	2L_4816848_SNP [dm3] 2L_4816848_SNP [dm6]	C	G	2.451e^-4	0.668	SYNONYMOUS_CODING CG3225 DOWNSTREAM CG15629 & 1 other	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3L	12042838	3L_12042838_SNP [dm3] 3L_12049738_SNP [dm6]	A	T	2.452e^-4	0.668	INTRON rols
X	16071928	X_16071928_DEL [dm3] X_16177895_DEL [dm6]	AA	A	2.454e^-4	0.668	INTERGENIC	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_Med
2L	11738236	2L_11738236_SNP [dm3] 2L_11738236_SNP [dm6]	C	A	2.455e^-4	0.668	UPSTREAM Vha100-5 DOWNSTREAM CR44145 INTERGENIC
X	12732403	X_12732403_SNP [dm3] X_12838370_SNP [dm6]	A	C	2.456e^-4	0.668	INTRON Pde9	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8501249	X_8501249_SNP [dm3] X_8607216_SNP [dm6]	A	G	2.462e^-4	0.668	UPSTREAM Caf1-180 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	3078369	2R_3078369_SNP [dm3] 2R_7190864_SNP [dm6]	C	T	2.464e^-4	0.668	INTRON pk	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1494893	2L_1494893_SNP [dm3] 2L_1494893_SNP [dm6]	C	T	2.466e^-4	0.668	SYNONYMOUS_CODING CG33128 UPSTREAM CG31926	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11781179	2L_11781179_SNP [dm3] 2L_11781179_SNP [dm6]	A	C	2.474e^-4	0.668	INTERGENIC
2L	11781180	2L_11781180_SNP [dm3] 2L_11781180_SNP [dm6]	A	C	2.474e^-4	0.668	INTERGENIC
2R	14373049	2R_14373049_SNP [dm3] 2R_18485544_SNP [dm6]	T	C	2.476e^-4	0.668	INTRON CG30116
2L	15036994	2L_15036994_SNP [dm3] 2L_15036994_SNP [dm6]	G	T	2.480e^-4	0.668	SPLICE_SITE_REGION yellow-c UTR_3_PRIME CIAPIN1 INTRON yellow-c	TF binding site mE1_TFBS_sens
2L	1794696	2L_1794696_SNP [dm3] 2L_1794696_SNP [dm6]	G	A	2.486e^-4	0.668	SYNONYMOUS_CODING Gr22a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	27513291	3R_27513291_SNP [dm3] 3R_31687569_SNP [dm6]	C	T	2.486e^-4	0.668	DOWNSTREAM CR45564 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	2822715	2L_2822715_SNP [dm3] 2L_2822715_SNP [dm6]	C	T	2.488e^-4	0.668	DOWNSTREAM CG3123 INTRON Duox
2L	12119035	2L_12119035_SNP [dm3] 2L_12119035_SNP [dm6]	A	C	2.488e^-4	0.668	INTRON CG17211
X	4412903	X_4412903_SNP [dm3] X_4518870_SNP [dm6]	G	A	2.491e^-4	0.668	INTRON CR32773	TF binding site mE1_TFBS_inv
3R	8711843	3R_8711843_SNP [dm3] 3R_12886121_SNP [dm6]	G	A	2.496e^-4	0.668	INTERGENIC
2L	3969848	2L_3969848_SNP [dm3] 2L_3969848_SNP [dm6]	G	C	2.496e^-4	0.668	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	3346306	2L_3346306_SNP [dm3] 2L_3346306_SNP [dm6]	G	T	2.496e^-4	0.668	INTRON E23
2R	3223599	2R_3223599_SNP [dm3] 2R_7336094_SNP [dm6]	T	G	2.497e^-4	0.668	DOWNSTREAM CR45129 INTRON Dscam1	TF binding site mE1_TFBS_cad
2L	5423691	2L_5423691_SNP [dm3] 2L_5423691_SNP [dm6]	G	A	2.503e^-4	0.669	INTERGENIC
3R	6651408	3R_6651408_SNP [dm3] 3R_10825686_SNP [dm6]	C	T	2.511e^-4	0.669	INTERGENIC
X	13411201	X_13411201_SNP [dm3] X_13517168_SNP [dm6]	A	T	2.514e^-4	0.669	INTRON Neto
2L	11640074	2L_11640074_SNP [dm3] 2L_11640074_SNP [dm6]	A	G	2.515e^-4	0.669	INTERGENIC
3R	15198684	3R_15198684_SNP [dm3] 3R_19372962_SNP [dm6]	C	T	2.523e^-4	0.67	DOWNSTREAM CG3581 INTRON Ino80	TF binding site BDTNP1_TFBS_hb
3R	25851517	3R_25851517_SNP [dm3] 3R_30025795_SNP [dm6]	A	G	2.527e^-4	0.67	INTRON Axn
2L	11781183	2L_11781183_SNP [dm3] 2L_11781183_SNP [dm6]	G	T	2.534e^-4	0.671	INTERGENIC
X	12359869	X_12359869_SNP [dm3] X_12465836_SNP [dm6]	G	C	2.536e^-4	0.671	INTRON CG42258
2R	5138440	2R_5138440_SNP [dm3] 2R_9250935_SNP [dm6]	C	T	2.542e^-4	0.672	INTERGENIC
2R	15093370	2R_15093370_DEL [dm3] 2R_19205865_DEL [dm6]	GTTCGAAGGACTTGCATG...	C	2.546e^-4	0.672	INTRON hppy
2L	3878156	2L_3878156_DEL [dm3] 2L_3878156_DEL [dm6]	GA	C	2.563e^-4	0.674	INTRON capu
2L	9321533	2L_9321533_SNP [dm3] 2L_9321533_SNP [dm6]	G	T	2.565e^-4	0.674	INTERGENIC
2R	604507	2R_604507_SNP [dm3] 2R_4717002_SNP [dm6]	G	A	2.570e^-4	0.674	INTRON Nipped-B	transposable element FlyBase
3R	14436667	3R_14436667_SNP [dm3] 3R_18610945_SNP [dm6]	T	A	2.575e^-4	0.674	INTRON qin & 1 other
3R	26764777	3R_26764777_SNP [dm3] 3R_30939055_SNP [dm6]	G	T	2.577e^-4	0.674	INTERGENIC
X	19784450	X_19784450_SNP [dm3] X_19890417_SNP [dm6]	T	G	2.587e^-4	0.674	UPSTREAM amn INTRON Hers	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	14193782	2L_14193782_SNP [dm3] 2L_14193782_SNP [dm6]	C	T	2.587e^-4	0.674	INTRON Dyrk2	TF binding site mE1_TFBS_inv
2L	4402260	2L_4402260_SNP [dm3] 2L_4402260_SNP [dm6]	G	A	2.589e^-4	0.674	SYNONYMOUS_CODING CG33003 UPSTREAM Dim1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11578524	2L_11578524_SNP [dm3] 2L_11578524_SNP [dm6]	G	A	2.591e^-4	0.674	INTERGENIC
2L	8201676	2L_8201676_SNP [dm3] 2L_8201676_SNP [dm6]	A	G	2.592e^-4	0.674	SYNONYMOUS_CODING SLC5A11 EXON CR44119
3R	3167696	3R_3167696_SNP [dm3] 3R_7341974_SNP [dm6]	T	A	2.596e^-4	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	16727373	X_16727373_SNP [dm3] X_16833340_SNP [dm6]	A	T	2.600e^-4	0.674	INTRON CG13004
3L	2013935	3L_2013935_SNP [dm3] 3L_2013935_SNP [dm6]	A	T	2.601e^-4	0.674	INTERGENIC
2R	10995312	2R_10995312_SNP [dm3] 2R_15107807_SNP [dm6]	T	A	2.611e^-4	0.675	INTERGENIC
2L	13922669	2L_13922669_SNP [dm3] 2L_13922669_SNP [dm6]	T	G	2.616e^-4	0.675	SYNONYMOUS_CODING CG16886 INTRON Ance-3	TF binding site mE1_TFBS_cad
3L	7003229	3L_7003229_DEL [dm3] 3L_7010129_DEL [dm6]	TA	C	2.621e^-4	0.675	INTRON Mp
2R	16907379	2R_16907379_SNP [dm3] 2R_21019874_SNP [dm6]	T	A	2.622e^-4	0.675	INTRON RIC-3
2L	22195739	2L_22195739_SNP [dm3] 2L_22195739_SNP [dm6]	C	T	2.626e^-4	0.675	INTRON Ir40a	transposable element FlyBase
2R	3219747	2R_3219747_SNP [dm3] 2R_7332242_SNP [dm6]	G	A	2.627e^-4	0.675	INTRON CR45129 & 1 other
2L	11849815	2L_11849815_SNP [dm3] 2L_11849815_SNP [dm6]	A	T	2.639e^-4	0.676	UPSTREAM Mal-B2 DOWNSTREAM Mal-B1 INTRON Pde1c
2L	6891838	2L_6891838_SNP [dm3] 2L_6891838_SNP [dm6]	G	A	2.655e^-4	0.676	INTRON Nlg2
2L	9726771	2L_9726771_DEL [dm3] 2L_9726771_DEL [dm6]	AATA	A	2.656e^-4	0.676	INTRON Nckx30C
2L	4707025	2L_4707025_SNP [dm3] 2L_4707025_SNP [dm6]	T	G	2.662e^-4	0.676	INTRON CG34351
2L	1107120	2L_1107120_SNP [dm3] 2L_1107120_SNP [dm6]	C	T	2.663e^-4	0.676	INTRON mtRNApol	TF binding site mE1_TFBS_sens
2L	15057413	2L_15057413_SNP [dm3] 2L_15057413_SNP [dm6]	A	G	2.668e^-4	0.676	UPSTREAM CG33679 INTRON ck	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	3360656	2L_3360656_SNP [dm3] 2L_3360656_SNP [dm6]	G	T	2.673e^-4	0.676	UTR_3_PRIME CG34394
3R	25235066	3R_25235066_SNP [dm3] 3R_29409344_SNP [dm6]	T	G	2.673e^-4	0.676	INTRON Ptp99A
2L	5423884	2L_5423884_SNP [dm3] 2L_5423884_SNP [dm6]	G	A	2.673e^-4	0.676	INTERGENIC
2R	13612432	2R_13612432_SNP [dm3] 2R_17724927_SNP [dm6]	C	T	2.674e^-4	0.676	UTR_3_PRIME CG10933 DOWNSTREAM Snx16	TF binding site mE1_TFBS_HSA
3L	10797970	3L_10797970_SNP [dm3] 3L_10804870_SNP [dm6]	C	A	2.675e^-4	0.676	DOWNSTREAM CR44347 EXON CR44347
3R	24976732	3R_24976732_SNP [dm3] 3R_29151010_SNP [dm6]	T	C	2.678e^-4	0.676	NON_SYNONYMOUS_CODING ligatin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	15438949	2R_15438949_SNP [dm3] 2R_19551444_SNP [dm6]	T	A	2.680e^-4	0.676	UPSTREAM CG43111 INTRON sm
3L	10721866	3L_10721866_SNP [dm3] 3L_10728766_SNP [dm6]	G	A	2.681e^-4	0.676	INTERGENIC
3R	13922114	3R_13922114_SNP [dm3] 3R_18096392_SNP [dm6]	A	G	2.683e^-4	0.676	SYNONYMOUS_CODING sr
2R	4342687	2R_4342687_SNP [dm3] 2R_8455182_SNP [dm6]	T	A	2.690e^-4	0.676	DOWNSTREAM Mal-A3 INTRON Mal-A2
2L	4698098	2L_4698098_SNP [dm3] 2L_4698098_SNP [dm6]	G	A	2.713e^-4	0.68	INTRON CG34351
2R	6277499	2R_6277499_SNP [dm3] 2R_10389994_SNP [dm6]	A	T	2.713e^-4	0.68	INTRON CG42732
2L	13602500	2L_13602500_SNP [dm3] 2L_13602500_SNP [dm6]	T	C	2.718e^-4	0.681	INTRON kuz
2L	4855754	2L_4855754_SNP [dm3] 2L_4855754_SNP [dm6]	T	A	2.725e^-4	0.681	INTRON pog
2L	2744545	2L_2744545_SNP [dm3] 2L_2744545_SNP [dm6]	A	C	2.729e^-4	0.681	UPSTREAM Cwc25 INTRON CG9961	TF binding site mE1_TFBS_Ubx
2L	2879968	2L_2879968_SNP [dm3] 2L_2879968_SNP [dm6]	A	G	2.732e^-4	0.681	DOWNSTREAM CG31950 & 1 other INTRON betaggt-II	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	11684920	2L_11684920_SNP [dm3] 2L_11684920_SNP [dm6]	A	G	2.740e^-4	0.681	INTERGENIC
2L	15810712	2L_15810712_SNP [dm3] 2L_15810712_SNP [dm6]	A	G	2.741e^-4	0.681	UTR_3_PRIME CG42876 UPSTREAM CR44602 DOWNSTREAM CG42876	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26570746	3R_26570746_SNP [dm3] 3R_30745024_SNP [dm6]	G	A	2.743e^-4	0.681	SYNONYMOUS_CODING Npc2g DOWNSTREAM CG15543 & 1 other	TF binding site mE1_TFBS_cad
2L	11693794	2L_11693794_SNP [dm3] 2L_11693794_SNP [dm6]	C	A	2.749e^-4	0.681	INTERGENIC	TF binding site mE1_TFBS_inv
3R	18478272	3R_18478272_SNP [dm3] 3R_22652550_SNP [dm6]	G	A	2.752e^-4	0.681	SYNONYMOUS_CODING CG45058 UTR_5_PRIME CG45058	TF binding site mE1_TFBS_chinmo
3R	5651025	3R_5651025_SNP [dm3] 3R_9825303_SNP [dm6]	C	G	2.758e^-4	0.681	UPSTREAM CR42858 DOWNSTREAM Teh1 INTERGENIC	TF binding site mE1_TFBS_cad
2L	4385136	2L_4385136_SNP [dm3] 2L_4385136_SNP [dm6]	A	G	2.759e^-4	0.681	SYNONYMOUS_CODING CG3338	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3333012	2L_3333012_SNP [dm3] 2L_3333012_SNP [dm6]	A	C	2.769e^-4	0.681	DOWNSTREAM CG3285 INTRON CG15408	TF binding site mE1_TFBS_cad
2L	17740394	2L_17740394_SNP [dm3] 2L_17740394_SNP [dm6]	T	G	2.778e^-4	0.681	INTRON CadN	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2184878	3L_2184878_SNP [dm3] 3L_2184878_SNP [dm6]	A	G	2.780e^-4	0.681	INTERGENIC
2R	1082152	2R_1082152_SNP [dm3] 2R_5194647_SNP [dm6]	T	G	2.797e^-4	0.681	INTRON Nipped-A
3L	2343137	3L_2343137_SNP [dm3] 3L_2343137_SNP [dm6]	A	G	2.804e^-4	0.681	SYNONYMOUS_CODING MsR1
2R	16965616	2R_16965616_SNP [dm3] 2R_21078111_SNP [dm6]	G	T	2.820e^-4	0.681	INTRON Treh
2R	4244308	2R_4244308_SNP [dm3] 2R_8356803_SNP [dm6]	A	G	2.822e^-4	0.681	INTRON pdm3
3L	2697646	3L_2697646_SNP [dm3] 3L_2697646_SNP [dm6]	C	A	2.828e^-4	0.681	INTRON Fife
3R	20368160	3R_20368160_DEL [dm3] 3R_24542438_DEL [dm6]	GTACATATG	G	2.833e^-4	0.681	INTRON CG5789
2L	3326315	2L_3326315_SNP [dm3] 2L_3326315_SNP [dm6]	C	T	2.835e^-4	0.681	SYNONYMOUS_CODING CG33281
2L	3329368	2L_3329368_SNP [dm3] 2L_3329368_SNP [dm6]	A	T	2.835e^-4	0.681	INTRON CG33282
2L	8005948	2L_8005948_SNP [dm3] 2L_8005948_SNP [dm6]	T	C	2.843e^-4	0.681	INTRON Spn28Dc	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	4825401	2L_4825401_SNP [dm3] 2L_4825401_SNP [dm6]	G	A	2.844e^-4	0.681	INTRON CG15628
3L	1997583	3L_1997583_SNP [dm3] 3L_1997583_SNP [dm6]	G	A	2.845e^-4	0.681	INTERGENIC
3R	26750377	3R_26750377_DEL [dm3] 3R_30924655_DEL [dm6]	TTCGTATCACTT...	T	2.851e^-4	0.681	INTRON Ptx1	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
X	3892975	X_3892975_SNP [dm3] X_3998942_SNP [dm6]	C	G	2.853e^-4	0.681	INTERGENIC
2L	14138550	2L_14138550_SNP [dm3] 2L_14138550_SNP [dm6]	G	A	2.861e^-4	0.681	INTRON CG17341
3L	18013355	3L_18013355_SNP [dm3] 3L_18020255_SNP [dm6]	C	T	2.863e^-4	0.681	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14380814	3R_14380814_SNP [dm3] 3R_18555092_SNP [dm6]	T	A	2.865e^-4	0.681	INTERGENIC
2R	19581066	2R_19581066_SNP [dm3] 2R_23693543_SNP [dm6]	G	C	2.866e^-4	0.681	SYNONYMOUS_CODING CG30183 UPSTREAM angel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3675158	2L_3675158_SNP [dm3] 2L_3675158_SNP [dm6]	C	A	2.869e^-4	0.681	INTRON CG34340
X	6603468	X_6603468_SNP [dm3] X_6709435_SNP [dm6]	T	G	2.872e^-4	0.681	UTR_5_PRIME CG14441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	25319670	3R_25319670_SNP [dm3] 3R_29493948_SNP [dm6]	T	G	2.874e^-4	0.681	NON_SYNONYMOUS_CODING Diedel UPSTREAM CG2310 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	12634666	X_12634666_SNP [dm3] X_12740633_SNP [dm6]	A	T	2.875e^-4	0.681	INTRON Smr
2L	11858204	2L_11858204_SNP [dm3] 2L_11858204_SNP [dm6]	A	G	2.876e^-4	0.681	INTRON Pde1c
2L	15770155	2L_15770155_SNP [dm3] 2L_15770155_SNP [dm6]	C	T	2.878e^-4	0.681	SYNONYMOUS_CODING Ku80
2L	6750685	2L_6750685_DEL [dm3] 2L_6750685_DEL [dm6]	TT	T	2.880e^-4	0.681	INTRON CG11221
X	11718680	X_11718680_SNP [dm3] X_11824647_SNP [dm6]	A	C	2.882e^-4	0.681	INTRON rudhira
2L	12993980	2L_12993980_SNP [dm3] 2L_12993980_SNP [dm6]	G	A	2.883e^-4	0.681	UTR_3_PRIME CG12404
X	5460712	X_5460712_INS [dm3] X_5566679_INS [dm6]	T	TT	2.885e^-4	0.681	INTERGENIC
2R	15460571	2R_15460571_SNP [dm3] 2R_19573066_SNP [dm6]	A	C	2.886e^-4	0.681	INTRON sm	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	19880426	2L_19880426_SNP [dm3] 2L_19880426_SNP [dm6]	A	T	2.886e^-4	0.681	INTRON sick
3L	10454334	3L_10454334_SNP [dm3] 3L_10461234_SNP [dm6]	T	A	2.886e^-4	0.681	NON_SYNONYMOUS_CODING Gem3
3L	10454336	3L_10454336_SNP [dm3] 3L_10461236_SNP [dm6]	C	T	2.886e^-4	0.681	NON_SYNONYMOUS_CODING Gem3
3R	18752990	3R_18752990_SNP [dm3] 3R_22927268_SNP [dm6]	G	T	2.889e^-4	0.681	INTRON klg
3R	5680359	3R_5680359_SNP [dm3] 3R_9854637_SNP [dm6]	A	T	2.891e^-4	0.681	INTRON Teh1
3R	15074386	3R_15074386_SNP [dm3] 3R_19248664_SNP [dm6]	T	C	2.891e^-4	0.681	UPSTREAM CG5217 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	15851282	2R_15851282_SNP [dm3] 2R_19963777_SNP [dm6]	T	C	2.894e^-4	0.681	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17087041	2R_17087041_SNP [dm3] 2R_21199536_SNP [dm6]	A	T	2.895e^-4	0.681	UPSTREAM Glycogenin & 1 other DOWNSTREAM Lapsyn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
2R	3095297	2R_3095297_SNP [dm3] 2R_7207792_SNP [dm6]	A	C	2.905e^-4	0.682	INTRON pk
3R	3753093	3R_3753093_SNP [dm3] 3R_7927371_SNP [dm6]	A	G	2.914e^-4	0.683	INTRON dsx
2L	3675571	2L_3675571_SNP [dm3] 2L_3675571_SNP [dm6]	G	A	2.918e^-4	0.683	INTRON CG34340
3R	12870728	3R_12870728_SNP [dm3] 3R_17045006_SNP [dm6]	A	G	2.924e^-4	0.684	SYNONYMOUS_CODING Patr-1	TF binding site BDTNP1_TFBS_twi
2L	6819610	2L_6819610_SNP [dm3] 2L_6819610_SNP [dm6]	C	T	2.938e^-4	0.685	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad
3L	10300693	3L_10300693_SNP [dm3] 3L_10307593_SNP [dm6]	A	T	2.940e^-4	0.685	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10300697	3L_10300697_SNP [dm3] 3L_10307597_SNP [dm6]	G	T	2.940e^-4	0.685	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	24611586	3R_24611586_DEL [dm3] 3R_28785864_DEL [dm6]	CC	C	2.945e^-4	0.685	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	10336432	3L_10336432_SNP [dm3] 3L_10343332_SNP [dm6]	G	A	2.950e^-4	0.686	INTERGENIC
2L	10299977	2L_10299977_SNP [dm3] 2L_10299977_SNP [dm6]	A	G	2.954e^-4	0.686	UTR_3_PRIME CG13138 UPSTREAM CYLD DOWNSTREAM CG13138	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	10044751	X_10044751_SNP [dm3] X_10150718_SNP [dm6]	G	T	2.966e^-4	0.686	INTRON CR44894
3L	6095570	3L_6095570_SNP [dm3] 3L_6102470_SNP [dm6]	G	T	2.971e^-4	0.686	INTRON Ets65A
X	18204213	X_18204213_SNP [dm3] X_18310180_SNP [dm6]	A	G	2.984e^-4	0.686	UPSTREAM os DOWNSTREAM CR45608 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	18210295	X_18210295_SNP [dm3] X_18316262_SNP [dm6]	G	A	2.990e^-4	0.686	UPSTREAM CG6023 INTRON CG6023	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	16006006	3R_16006006_SNP [dm3] 3R_20180284_SNP [dm6]	A	G	2.991e^-4	0.686	INTERGENIC
2L	11583300	2L_11583300_SNP [dm3] 2L_11583300_SNP [dm6]	C	T	2.992e^-4	0.686	INTRON kek2
2R	8172891	2R_8172891_SNP [dm3] 2R_12285386_SNP [dm6]	A	T	2.994e^-4	0.686	UPSTREAM CG42700 INTRON CG42700
3R	8716190	3R_8716190_SNP [dm3] 3R_12890468_SNP [dm6]	A	G	2.994e^-4	0.686	INTERGENIC
2L	5966266	2L_5966266_SNP [dm3] 2L_5966266_SNP [dm6]	G	T	3.002e^-4	0.686	SYNONYMOUS_CODING CG13992	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7951242	2L_7951242_SNP [dm3] 2L_7951242_SNP [dm6]	T	C	3.002e^-4	0.686	INTRON Snoo
3R	12871205	3R_12871205_SNP [dm3] 3R_17045483_SNP [dm6]	G	A	3.003e^-4	0.686	SYNONYMOUS_CODING Patr-1	TF binding site mE1_TFBS_sens
2R	13960175	2R_13960175_SNP [dm3] 2R_18072670_SNP [dm6]	T	C	3.005e^-4	0.686	INTRON CG34386
X	10237869	X_10237869_SNP [dm3] X_10343836_SNP [dm6]	A	T	3.008e^-4	0.686	INTRON CG43740
2R	17094654	2R_17094654_SNP [dm3] 2R_21207149_SNP [dm6]	G	T	3.008e^-4	0.686	SYNONYMOUS_CODING Glycogenin INTRON CG44245 & 1 other
3R	26174302	3R_26174302_SNP [dm3] 3R_30348580_SNP [dm6]	C	G	3.018e^-4	0.687	INTRON hdc
2R	10699249	2R_10699249_SNP [dm3] 2R_14811744_SNP [dm6]	C	T	3.024e^-4	0.687	INTERGENIC	regulatory region REDfly_CRMs
2R	19587839	2R_19587839_SNP [dm3] 2R_23700316_SNP [dm6]	G	A	3.024e^-4	0.687	SYNONYMOUS_CODING CG4091
2L	538338	2L_538338_SNP [dm3] 2L_538338_SNP [dm6]	T	A	3.026e^-4	0.687	NON_SYNONYMOUS_CODING ush	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9336425	2L_9336425_SNP [dm3] 2L_9336425_SNP [dm6]	T	C	3.035e^-4	0.687	INTRON Eaat1
3L	9590275	3L_9590275_SNP [dm3] 3L_9597175_SNP [dm6]	T	C	3.045e^-4	0.687	UPSTREAM CG14177 DOWNSTREAM CG42673 INTERGENIC
X	10695264	X_10695264_SNP [dm3] X_10801231_SNP [dm6]	G	A	3.047e^-4	0.687	INTRON Imp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18753149	3R_18753149_SNP [dm3] 3R_22927427_SNP [dm6]	C	T	3.052e^-4	0.687	INTRON klg
2R	10897264	2R_10897264_SNP [dm3] 2R_15009759_SNP [dm6]	C	T	3.053e^-4	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	4406223	3R_4406223_SNP [dm3] 3R_8580501_SNP [dm6]	A	G	3.055e^-4	0.687	INTRON 5-HT2B
X	12359703	X_12359703_SNP [dm3] X_12465670_SNP [dm6]	C	A	3.058e^-4	0.687	INTRON CG42258
2L	6648788	2L_6648788_SNP [dm3] 2L_6648788_SNP [dm6]	G	A	3.060e^-4	0.687	START_GAINED CG31635 UTR_5_PRIME CG31635 UPSTREAM CG31635 & 1 other INTRON CG31635	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	15194740	2L_15194740_SNP [dm3] 2L_15194740_SNP [dm6]	G	C	3.062e^-4	0.687	INTRON CG4168
3L	15630244	3L_15630244_SNP [dm3] 3L_15637144_SNP [dm6]	T	C	3.062e^-4	0.687	INTRON comm3	TF binding site BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA
X	18207933	X_18207933_INS [dm3] X_18313900_INS [dm6]	A	AAAAATAAATTCATTTTCTG...	3.064e^-4	0.687	DOWNSTREAM CG6023 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
3R	4002948	3R_4002948_SNP [dm3] 3R_8177226_SNP [dm6]	C	T	3.076e^-4	0.687	INTRON grn
X	14423366	X_14423366_SNP [dm3] X_14529333_SNP [dm6]	A	G	3.080e^-4	0.687	INTERGENIC
3R	27434644	3R_27434644_SNP [dm3] 3R_31608922_SNP [dm6]	C	A	3.081e^-4	0.687	INTRON CycG	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	12162496	3L_12162496_SNP [dm3] 3L_12169396_SNP [dm6]	A	G	3.082e^-4	0.687	INTRON Rh7
2L	3083403	2L_3083403_DEL [dm3] 2L_3083403_DEL [dm6]	CCCAAAATCATGCCTCTTTT...	C	3.101e^-4	0.691	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
X	14759669	X_14759669_SNP [dm3] X_14865636_SNP [dm6]	C	G	3.112e^-4	0.691	SYNONYMOUS_CODING CG9518 INTRON Flo2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3L	3759909	3L_3759909_SNP [dm3] 3L_3759909_SNP [dm6]	G	T	3.112e^-4	0.691	UPSTREAM CG32264 INTRON CG32264	TF binding site mE1_TFBS_HSA
2L	19880392	2L_19880392_SNP [dm3] 2L_19880392_SNP [dm6]	A	G	3.113e^-4	0.691	INTRON sick
2L	6750931	2L_6750931_SNP [dm3] 2L_6750931_SNP [dm6]	A	G	3.136e^-4	0.691	INTRON CG11221
3L	1040725	3L_1040725_SNP [dm3] 3L_1040725_SNP [dm6]	G	T	3.138e^-4	0.691	INTRON bab1
3L	1040726	3L_1040726_INS [dm3] 3L_1040726_INS [dm6]	C	CTAGATT	3.138e^-4	0.691	INTRON bab1
3L	1040738	3L_1040738_INS [dm3] 3L_1040738_INS [dm6]	A	TGTG	3.138e^-4	0.691	INTRON bab1
3L	1040743	3L_1040743_SNP [dm3] 3L_1040743_SNP [dm6]	T	A	3.138e^-4	0.691	INTRON bab1
2R	13569418	2R_13569418_SNP [dm3] 2R_17681913_SNP [dm6]	A	G	3.144e^-4	0.691	INTRON Sema-1b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
X	21126589	X_21126589_SNP [dm3] X_21255562_SNP [dm6]	C	T	3.148e^-4	0.691	INTRON CG32521
X	8727014	X_8727014_SNP [dm3] X_8832981_SNP [dm6]	G	A	3.148e^-4	0.691	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	3755979	2L_3755979_SNP [dm3] 2L_3755979_SNP [dm6]	G	A	3.148e^-4	0.691	INTERGENIC
2L	4824350	2L_4824350_SNP [dm3] 2L_4824350_SNP [dm6]	T	A	3.149e^-4	0.691	INTRON CG15628	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	14452591	2L_14452591_SNP [dm3] 2L_14452591_SNP [dm6]	C	A	3.153e^-4	0.691	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12501796	3L_12501796_SNP [dm3] 3L_12508696_SNP [dm6]	G	A	3.159e^-4	0.691	SYNONYMOUS_CODING sti UPSTREAM CG10654	TF binding site mE1_TFBS_sens
2L	10234582	2L_10234582_SNP [dm3] 2L_10234582_SNP [dm6]	T	G	3.163e^-4	0.691	DOWNSTREAM mthl15 & 1 other INTERGENIC
3R	21417321	3R_21417321_SNP [dm3] 3R_25591599_SNP [dm6]	T	A	3.169e^-4	0.691	UTR_3_PRIME ymp INTRON msi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	11641714	2L_11641714_SNP [dm3] 2L_11641714_SNP [dm6]	G	T	3.170e^-4	0.691	INTERGENIC
3L	8221163	3L_8221163_SNP [dm3] 3L_8228063_SNP [dm6]	A	G	3.181e^-4	0.692	INTERGENIC
2R	10858712	2R_10858712_SNP [dm3] 2R_14971207_SNP [dm6]	A	T	3.181e^-4	0.692	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	17821110	3R_17821110_SNP [dm3] 3R_21995388_SNP [dm6]	G	A	3.194e^-4	0.694	INTRON Eip93F
2L	2744570	2L_2744570_SNP [dm3] 2L_2744570_SNP [dm6]	T	C	3.200e^-4	0.694	UPSTREAM Cwc25 INTRON CG9961	TF binding site mE1_TFBS_Ubx
X	4615922	X_4615922_SNP [dm3] X_4721889_SNP [dm6]	C	A	3.200e^-4	0.694	INTRON Proc-R
2L	11912692	2L_11912692_DEL [dm3] 2L_11912692_DEL [dm6]	TGCACTTAAATC...	A	3.206e^-4	0.694	INTRON Pde1c
2L	11494566	2L_11494566_SNP [dm3] 2L_11494566_SNP [dm6]	G	A	3.209e^-4	0.694	INTERGENIC
2L	11668065	2L_11668065_SNP [dm3] 2L_11668065_SNP [dm6]	C	G	3.217e^-4	0.695	INTERGENIC
2L	4235355	2L_4235355_SNP [dm3] 2L_4235355_SNP [dm6]	G	T	3.231e^-4	0.695	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	12359698	X_12359698_SNP [dm3] X_12465665_SNP [dm6]	G	T	3.233e^-4	0.695	INTRON CG42258
3R	20730840	3R_20730840_SNP [dm3] 3R_24905118_SNP [dm6]	G	A	3.235e^-4	0.695	INTRON CG13643
3L	11552495	3L_11552495_SNP [dm3] 3L_11559395_SNP [dm6]	A	T	3.235e^-4	0.695	UPSTREAM Mob2 INTRON Mob2
X	14995501	X_14995501_SNP [dm3] X_15101468_SNP [dm6]	C	T	3.237e^-4	0.695	INTRON Rab3-GEF	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	10237840	X_10237840_SNP [dm3] X_10343807_SNP [dm6]	G	A	3.242e^-4	0.695	INTRON CG43740
2L	1105084	2L_1105084_SNP [dm3] 2L_1105084_SNP [dm6]	G	A	3.245e^-4	0.695	SYNONYMOUS_CODING mtRNApol	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19428036	3L_19428036_SNP [dm3] 3L_19434936_SNP [dm6]	T	C	3.246e^-4	0.695	INTERGENIC
3R	22096050	3R_22096050_SNP [dm3] 3R_26270328_SNP [dm6]	G	T	3.252e^-4	0.696	INTRON CG6154
2L	9071695	2L_9071695_SNP [dm3] 2L_9071695_SNP [dm6]	T	C	3.262e^-4	0.697	UPSTREAM CG31708 DOWNSTREAM CR44483 INTERGENIC
2L	11367912	2L_11367912_SNP [dm3] 2L_11367912_SNP [dm6]	A	T	3.265e^-4	0.697	SYNONYMOUS_CODING salr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4831707	2L_4831707_SNP [dm3] 2L_4831707_SNP [dm6]	G	C	3.268e^-4	0.697	SYNONYMOUS_CODING Ir25a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4947204	3L_4947204_SNP [dm3] 3L_4947204_SNP [dm6]	G	A	3.287e^-4	0.698	INTRON Con
2R	19583154	2R_19583154_SNP [dm3] 2R_23695631_SNP [dm6]	T	G	3.287e^-4	0.698	SYNONYMOUS_CODING CG30183 DOWNSTREAM angel	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8225672	2L_8225672_SNP [dm3] 2L_8225672_SNP [dm6]	G	A	3.288e^-4	0.698	SPLICE_SITE_REGION Pvr SYNONYMOUS_CODING Pvr
2L	15904331	2L_15904331_INS [dm3] 2L_15904331_INS [dm6]	T	TAGTT	3.291e^-4	0.698	DOWNSTREAM beat-Ib INTERGENIC
X	21440379	X_21440379_SNP [dm3] X_21569352_SNP [dm6]	A	G	3.292e^-4	0.698	INTERGENIC
2R	9956475	2R_9956475_SNP [dm3] 2R_14068970_SNP [dm6]	A	T	3.310e^-4	0.699	INTRON Prosap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9883973	2L_9883973_INS [dm3] 2L_9883973_INS [dm6]	A	AAA	3.317e^-4	0.699	INTRON nAChRalpha6
2L	6736359	2L_6736359_SNP [dm3] 2L_6736359_SNP [dm6]	T	C	3.318e^-4	0.699	DOWNSTREAM TTLL3A & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	22100807	3R_22100807_SNP [dm3] 3R_26275085_SNP [dm6]	C	A	3.319e^-4	0.699	UTR_3_PRIME CG6154 DOWNSTREAM CG6154
2L	3338960	2L_3338960_SNP [dm3] 2L_3338960_SNP [dm6]	G	T	3.320e^-4	0.699	INTRON E23	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
3L	11060088	3L_11060088_SNP [dm3] 3L_11066988_SNP [dm6]	T	A	3.321e^-4	0.699	SYNONYMOUS_CODING SuUR UTR_3_PRIME CG45101
X	18204207	X_18204207_SNP [dm3] X_18310174_SNP [dm6]	A	G	3.333e^-4	0.701	UPSTREAM os DOWNSTREAM CR45608 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	20527053	2L_20527053_SNP [dm3] 2L_20527053_SNP [dm6]	G	T	3.342e^-4	0.701	INTERGENIC
3R	20331956	3R_20331956_SNP [dm3] 3R_24506234_SNP [dm6]	C	T	3.344e^-4	0.701	INTERGENIC	transposable element FlyBase
2L	9190626	2L_9190626_SNP [dm3] 2L_9190626_SNP [dm6]	G	T	3.348e^-4	0.701	INTRON tai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
X	6784580	X_6784580_SNP [dm3] X_6890547_SNP [dm6]	G	T	3.351e^-4	0.701	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20368129	X_20368129_SNP [dm3] X_20497102_SNP [dm6]	A	C	3.353e^-4	0.701	INTRON RhoGAP19D
2L	21857194	2L_21857194_SNP [dm3] 2L_21857194_SNP [dm6]	T	A	3.359e^-4	0.702	INTRON CR44917	TF binding site mE1_TFBS_HSA transposable element FlyBase
3L	19214221	3L_19214221_SNP [dm3] 3L_19221121_SNP [dm6]	C	A	3.369e^-4	0.703	INTRON fz2
2L	14128711	2L_14128711_SNP [dm3] 2L_14128711_SNP [dm6]	C	A	3.376e^-4	0.703	INTERGENIC
X	18211388	X_18211388_SNP [dm3] X_18317355_SNP [dm6]	G	A	3.382e^-4	0.703	INTRON CG6023
3R	5646423	3R_5646423_SNP [dm3] 3R_9820701_SNP [dm6]	A	T	3.382e^-4	0.703	SYNONYMOUS_CODING CG42857 UPSTREAM CG9458
2L	7457399	2L_7457399_SNP [dm3] 2L_7457399_SNP [dm6]	T	C	3.383e^-4	0.703	UPSTREAM Gr28b INTRON Gr28b
2R	5129245	2R_5129245_SNP [dm3] 2R_9241740_SNP [dm6]	G	A	3.389e^-4	0.703	SYNONYMOUS_CODING Cyp4p1 UPSTREAM Cyp4p3 INTRON hig
2L	11858202	2L_11858202_SNP [dm3] 2L_11858202_SNP [dm6]	T	A	3.393e^-4	0.703	INTRON Pde1c
2L	8231026	2L_8231026_INS [dm3] 2L_8231026_INS [dm6]	T	TGAACTGAGCT...	3.402e^-4	0.703	UPSTREAM Pvr INTRON Pvr
3R	23221223	3R_23221223_SNP [dm3] 3R_27395501_SNP [dm6]	G	T	3.402e^-4	0.703	INTRON side
2L	12125662	2L_12125662_SNP [dm3] 2L_12125662_SNP [dm6]	G	T	3.403e^-4	0.703	SYNONYMOUS_CODING CG17211
2L	9726648	2L_9726648_SNP [dm3] 2L_9726648_SNP [dm6]	A	C	3.416e^-4	0.703	INTRON Nckx30C
2R	3220500	2R_3220500_SNP [dm3] 2R_7332995_SNP [dm6]	G	A	3.435e^-4	0.703	INTRON CR45129 & 1 other
2L	11866370	2L_11866370_INS [dm3] 2L_11866370_INS [dm6]	A	AA	3.435e^-4	0.703	INTRON Pde1c
2L	8204864	2L_8204864_SNP [dm3] 2L_8204864_SNP [dm6]	A	T	3.439e^-4	0.703	UTR_5_PRIME SLC5A11 DOWNSTREAM CR44120 & 1 other EXON CR44119	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	8204888	2L_8204888_SNP [dm3] 2L_8204888_SNP [dm6]	A	C	3.439e^-4	0.703	UTR_5_PRIME SLC5A11 DOWNSTREAM CR44120 & 1 other EXON CR44119	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	12109661	2R_12109661_SNP [dm3] 2R_16222156_SNP [dm6]	A	T	3.451e^-4	0.703	UTR_3_PRIME CG7798 UPSTREAM mrj INTRON CR43898	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1102131	2L_1102131_SNP [dm3] 2L_1102131_SNP [dm6]	A	T	3.454e^-4	0.703	INTRON CG4629
3R	27522984	3R_27522984_DEL [dm3] 3R_31697262_DEL [dm6]	TCCTGG	T	3.454e^-4	0.703	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	10447866	3L_10447866_SNP [dm3] 3L_10454766_SNP [dm6]	C	T	3.454e^-4	0.703	INTERGENIC
X	16727431	X_16727431_SNP [dm3] X_16833398_SNP [dm6]	A	G	3.456e^-4	0.703	INTRON CG13004
2L	9553948	2L_9553948_SNP [dm3] 2L_9553948_SNP [dm6]	C	G	3.460e^-4	0.703	INTRON jp	TF binding site mE1_TFBS_cad
2R	10278440	2R_10278440_SNP [dm3] 2R_14390935_SNP [dm6]	T	A	3.462e^-4	0.703	NON_SYNONYMOUS_CODING CG10104	TF binding site mE1_TFBS_cad
2R	3066848	2R_3066848_SNP [dm3] 2R_7179343_SNP [dm6]	G	A	3.465e^-4	0.703	SYNONYMOUS_CODING CG33140 INTRON pk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4408451	2L_4408451_SNP [dm3] 2L_4408451_SNP [dm6]	A	C	3.468e^-4	0.703	SYNONYMOUS_CODING CG15431	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10206961	2R_10206961_SNP [dm3] 2R_14319456_SNP [dm6]	C	T	3.472e^-4	0.703	INTRON Shroom
X	14990175	X_14990175_INS [dm3] X_15096142_INS [dm6]	T	TAAACGTA	3.473e^-4	0.703	UPSTREAM CG9072 INTRON Rab3-GEF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9883998	2L_9883998_SNP [dm3] 2L_9883998_SNP [dm6]	T	A	3.477e^-4	0.703	INTRON nAChRalpha6
2L	3285546	2L_3285546_SNP [dm3] 2L_3285546_SNP [dm6]	G	C	3.478e^-4	0.703	INTERGENIC
2L	10065482	2L_10065482_SNP [dm3] 2L_10065482_SNP [dm6]	G	T	3.480e^-4	0.703	INTRON CG44153	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5598886	2L_5598886_SNP [dm3] 2L_5598886_SNP [dm6]	T	A	3.491e^-4	0.703	DOWNSTREAM CG18266 INTERGENIC
3L	9755035	3L_9755035_SNP [dm3] 3L_9761935_SNP [dm6]	A	C	3.493e^-4	0.703	DOWNSTREAM CR45407 INTERGENIC	TF binding site BDTNP1_TFBS_z
2L	6750522	2L_6750522_DEL [dm3] 2L_6750522_DEL [dm6]	GG	G	3.494e^-4	0.703	INTRON CG11221
2L	21691385	2L_21691385_SNP [dm3] 2L_21691385_SNP [dm6]	C	T	3.500e^-4	0.703	INTRON CG31619
2R	15329431	2R_15329431_SNP [dm3] 2R_19441926_SNP [dm6]	G	A	3.505e^-4	0.703	UPSTREAM RpL11 DOWNSTREAM Spt5 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
2R	11004682	2R_11004682_SNP [dm3] 2R_15117177_SNP [dm6]	T	A	3.506e^-4	0.703	INTRON chn	TF binding site BDTNP1_TFBS_dl
2R	1113712	2R_1113712_SNP [dm3] 2R_5226207_SNP [dm6]	T	A	3.506e^-4	0.703	INTRON Nipped-A
3L	1793920	3L_1793920_SNP [dm3] 3L_1793920_SNP [dm6]	C	T	3.507e^-4	0.703	INTRON alpha-Spec & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	14496948	2R_14496948_SNP [dm3] 2R_18609443_SNP [dm6]	G	A	3.507e^-4	0.703	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4348620	2L_4348620_SNP [dm3] 2L_4348620_SNP [dm6]	A	G	3.524e^-4	0.704	UPSTREAM CR44699 DOWNSTREAM CR44697 EXON CR44698	TF binding site BDTNP1_TFBS_twi
2L	11858205	2L_11858205_SNP [dm3] 2L_11858205_SNP [dm6]	G	A	3.530e^-4	0.704	INTRON Pde1c
3R	6663318	3R_6663318_SNP [dm3] 3R_10837596_SNP [dm6]	C	A	3.532e^-4	0.704	INTRON Cad86C
2L	4417568	2L_4417568_SNP [dm3] 2L_4417568_SNP [dm6]	T	A	3.540e^-4	0.704	INTRON CG15431	TF binding site mE1_TFBS_chinmo
3R	8707623	3R_8707623_SNP [dm3] 3R_12881901_SNP [dm6]	A	T	3.542e^-4	0.704	INTERGENIC
2L	4089708	2L_4089708_SNP [dm3] 2L_4089708_SNP [dm6]	G	A	3.542e^-4	0.704	INTRON ed	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	22030673	3R_22030673_SNP [dm3] 3R_26204951_SNP [dm6]	C	T	3.542e^-4	0.704	INTRON CR44320
3R	18597332	3R_18597332_SNP [dm3] 3R_22771610_SNP [dm6]	T	C	3.556e^-4	0.704	NON_SYNONYMOUS_CODING CG43095 UPSTREAM CG43094 INTRON Usp12-46 & 1 other
3R	19146040	3R_19146040_SNP [dm3] 3R_23320318_SNP [dm6]	T	C	3.558e^-4	0.704	INTRON pnt	TF binding site BDTNP1_TFBS_dl
2L	7473234	2L_7473234_DEL [dm3] 2L_7473234_DEL [dm6]	ACTCGTTAATAA...	A	3.562e^-4	0.704	UTR_3_PRIME Ziz DOWNSTREAM CG6055 INTRON Ziz
2L	4365227	2L_4365227_SNP [dm3] 2L_4365227_SNP [dm6]	G	A	3.570e^-4	0.704	UPSTREAM CR45363 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3L	10721867	3L_10721867_SNP [dm3] 3L_10728767_SNP [dm6]	G	T	3.570e^-4	0.704	INTERGENIC
3L	7030586	3L_7030586_SNP [dm3] 3L_7037486_SNP [dm6]	C	A	3.572e^-4	0.704	INTRON Mp
3R	13987358	3R_13987358_SNP [dm3] 3R_18161636_SNP [dm6]	G	A	3.572e^-4	0.704	UTR_3_PRIME CG7218 DOWNSTREAM CG7218
3L	10300707	3L_10300707_SNP [dm3] 3L_10307607_SNP [dm6]	G	T	3.592e^-4	0.704	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4366966	2L_4366966_SNP [dm3] 2L_4366966_SNP [dm6]	C	T	3.594e^-4	0.704	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	5656440	3R_5656440_SNP [dm3] 3R_9830718_SNP [dm6]	C	T	3.597e^-4	0.704	INTRON Teh1
3R	13922111	3R_13922111_SNP [dm3] 3R_18096389_SNP [dm6]	G	A	3.601e^-4	0.704	SYNONYMOUS_CODING sr
2L	3737851	2L_3737851_SNP [dm3] 2L_3737851_SNP [dm6]	A	C	3.606e^-4	0.704	INTRON CG10019
3R	10632321	3R_10632321_SNP [dm3] 3R_14806599_SNP [dm6]	A	T	3.612e^-4	0.704	UTR_3_PRIME btsz	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	10300656	3L_10300656_DEL [dm3] 3L_10307556_DEL [dm6]	TAA	T	3.613e^-4	0.704	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4428044	2L_4428044_SNP [dm3] 2L_4428044_SNP [dm6]	T	A	3.613e^-4	0.704	INTRON CG15431
3L	766514	3L_766514_SNP [dm3] 3L_766514_SNP [dm6]	C	A	3.615e^-4	0.704	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15670124	3L_15670124_SNP [dm3] 3L_15677024_SNP [dm6]	C	T	3.619e^-4	0.704	INTERGENIC
2L	11072468	2L_11072468_SNP [dm3] 2L_11072468_SNP [dm6]	A	T	3.620e^-4	0.704	DOWNSTREAM CG14915 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	19496927	2L_19496927_SNP [dm3] 2L_19496927_SNP [dm6]	G	C	3.622e^-4	0.704	INTRON swm	TF binding site mE1_TFBS_cad
2L	22164343	2L_22164343_SNP [dm3] 2L_22164343_SNP [dm6]	C	T	3.627e^-4	0.704	UTR_3_PRIME CG42748
2L	3737845	2L_3737845_SNP [dm3] 2L_3737845_SNP [dm6]	G	A	3.628e^-4	0.704	INTRON CG10019
X	17324232	X_17324232_SNP [dm3] X_17430199_SNP [dm6]	T	A	3.632e^-4	0.704	INTRON CG12994
2L	11912710	2L_11912710_DEL [dm3] 2L_11912710_DEL [dm6]	AATGGTACTT	A	3.641e^-4	0.704	INTRON Pde1c
2R	17535298	2R_17535298_SNP [dm3] 2R_21647793_SNP [dm6]	A	T	3.655e^-4	0.704	INTRON CG10082	TF binding site BDTNP1_TFBS_dl
3L	14180453	3L_14180453_SNP [dm3] 3L_14187353_SNP [dm6]	T	A	3.657e^-4	0.704	SYNONYMOUS_CODING nan
2L	15904329	2L_15904329_SNP [dm3] 2L_15904329_SNP [dm6]	C	A	3.657e^-4	0.704	DOWNSTREAM beat-Ib INTERGENIC
3R	15087791	3R_15087791_SNP [dm3] 3R_19262069_SNP [dm6]	A	G	3.658e^-4	0.704	INTERGENIC
3R	24606787	3R_24606787_SNP [dm3] 3R_28781065_SNP [dm6]	A	G	3.659e^-4	0.704	INTERGENIC
X	17538210	X_17538210_SNP [dm3] X_17644177_SNP [dm6]	C	T	3.659e^-4	0.704	SPLICE_SITE_REGION RhoGAPp190 SYNONYMOUS_CODING RhoGAPp190 INTRON RhoGAPp190
2L	6801966	2L_6801966_SNP [dm3] 2L_6801966_SNP [dm6]	G	C	3.659e^-4	0.704	SYNONYMOUS_CODING CG17377 INTRON CG17377	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1194950	3L_1194950_SNP [dm3] 3L_1194950_SNP [dm6]	G	A	3.664e^-4	0.704	SYNONYMOUS_CODING LysX
3R	10607802	3R_10607802_SNP [dm3] 3R_14782080_SNP [dm6]	T	A	3.668e^-4	0.704	INTRON jvl
3L	1294540	3L_1294540_SNP [dm3] 3L_1294540_SNP [dm6]	A	C	3.670e^-4	0.704	UTR_3_PRIME CG32333 DOWNSTREAM CG32333
2L	15931198	2L_15931198_SNP [dm3] 2L_15931198_SNP [dm6]	G	T	3.673e^-4	0.704	INTRON beat-Ib
2L	1410778	2L_1410778_SNP [dm3] 2L_1410778_SNP [dm6]	G	A	3.678e^-4	0.704	INTRON lea	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	13837491	3R_13837491_SNP [dm3] 3R_18011769_SNP [dm6]	T	G	3.683e^-4	0.704	INTRON cpo
2L	3727371	2L_3727371_SNP [dm3] 2L_3727371_SNP [dm6]	T	A	3.683e^-4	0.704	UTR_3_PRIME Shaw
2L	15049455	2L_15049455_SNP [dm3] 2L_15049455_SNP [dm6]	G	A	3.687e^-4	0.704	SYNONYMOUS_CODING ck	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	11960443	2R_11960443_SNP [dm3] 2R_16072938_SNP [dm6]	T	C	3.691e^-4	0.704	INTERGENIC
2R	10699258	2R_10699258_SNP [dm3] 2R_14811753_SNP [dm6]	T	A	3.697e^-4	0.704	INTERGENIC	regulatory region REDfly_CRMs
3R	26867066	3R_26867066_SNP [dm3] 3R_31041344_SNP [dm6]	C	T	3.700e^-4	0.704	INTRON CanA1
X	16130959	X_16130959_SNP [dm3] X_16236926_SNP [dm6]	A	T	3.702e^-4	0.704	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	14557139	3R_14557139_DEL [dm3] 3R_18731417_DEL [dm6]	TAT	T	3.705e^-4	0.704	UTR_3_PRIME Cha DOWNSTREAM Cha
X	19861308	X_19861308_SNP [dm3] X_19967275_SNP [dm6]	A	C	3.707e^-4	0.704	INTRON Nep3
2L	7335410	2L_7335410_SNP [dm3] 2L_7335410_SNP [dm6]	C	A	3.717e^-4	0.706	INTRON Wnt6
3L	12532972	3L_12532972_SNP [dm3] 3L_12539872_SNP [dm6]	A	G	3.726e^-4	0.706	SYNONYMOUS_CODING sowah INTRON sowah	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	12359699	X_12359699_SNP [dm3] X_12465666_SNP [dm6]	T	C	3.734e^-4	0.706	INTRON CG42258
X	10044747	X_10044747_SNP [dm3] X_10150714_SNP [dm6]	T	C	3.737e^-4	0.706	INTRON CR44894
3R	26759857	3R_26759857_SNP [dm3] 3R_30934135_SNP [dm6]	G	A	3.744e^-4	0.706	INTERGENIC
2L	14133890	2L_14133890_SNP [dm3] 2L_14133890_SNP [dm6]	A	T	3.746e^-4	0.706	UPSTREAM CG17341 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13509924	2R_13509924_SNP [dm3] 2R_17622419_SNP [dm6]	C	T	3.749e^-4	0.706	INTRON CG10936
2L	11642047	2L_11642047_SNP [dm3] 2L_11642047_SNP [dm6]	T	A	3.754e^-4	0.706	INTERGENIC
3L	23765843	3L_23765843_SNP [dm3] 3L_23772743_SNP [dm6]	C	A	3.755e^-4	0.706	INTERGENIC
3R	26759395	3R_26759395_SNP [dm3] 3R_30933673_SNP [dm6]	C	T	3.758e^-4	0.706	INTERGENIC
3R	7368395	3R_7368395_SNP [dm3] 3R_11542673_SNP [dm6]	G	A	3.759e^-4	0.706	UTR_5_PRIME dpr4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	8941772	X_8941772_SNP [dm3] X_9047739_SNP [dm6]	A	T	3.761e^-4	0.706	INTRON CR43836 & 1 other	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	22096068	3R_22096068_SNP [dm3] 3R_26270346_SNP [dm6]	A	C	3.762e^-4	0.706	INTRON CG6154

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.661e^-7)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.02894
In_3R_P	0.08329

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	6.4499	0.0111

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1971 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	6681620	2L_6681620_SNP [dm3] 2L_6681620_SNP [dm6]	C	T	1.545e^-6	0.929	SYNONYMOUS_CODING Nhe3	TF binding site mE1_TFBS_inv
3R	11254641	3R_11254641_INS [dm3] 3R_15428919_INS [dm6]	C	TA	3.632e^-6	0.929	INTRON CG6118
3L	5874892	3L_5874892_SNP [dm3] 3L_5881792_SNP [dm6]	C	T	3.809e^-6	0.929	UPSTREAM CG13287 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	12653734	X_12653734_SNP [dm3] X_12759701_SNP [dm6]	T	A	3.878e^-6	0.929	DOWNSTREAM CG12717 INTRON ade5	TF binding site mE1_TFBS_inv
2L	6121268	2L_6121268_SNP [dm3] 2L_6121268_SNP [dm6]	A	G	4.401e^-6	0.929	DOWNSTREAM CG31642 INTRON stai	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	16126795	2R_16126795_SNP [dm3] 2R_20239290_SNP [dm6]	C	G	4.815e^-6	0.929	NON_SYNONYMOUS_CODING CG13869 UPSTREAM Efhc1.2 DOWNSTREAM CG11099
3L	15087034	3L_15087034_SNP [dm3] 3L_15093934_SNP [dm6]	G	A	6.312e^-6	0.929	INTRON cp309 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
2R	10006057	2R_10006057_SNP [dm3] 2R_14118552_SNP [dm6]	G	T	7.044e^-6	0.929	INTRON Prosap
3L	9237533	3L_9237533_DEL [dm3] 3L_9244433_DEL [dm6]	GT	G	7.361e^-6	0.929	INTERGENIC
2R	16126705	2R_16126705_SNP [dm3] 2R_20239200_SNP [dm6]	G	A	7.770e^-6	0.929	SYNONYMOUS_CODING CG13869 UTR_3_PRIME CG11099 UPSTREAM Efhc1.2
2L	13369055	2L_13369055_SNP [dm3] 2L_13369055_SNP [dm6]	G	A	8.217e^-6	0.929	UPSTREAM CG31855 DOWNSTREAM Tap42 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA
2R	2354330	2R_2354330_SNP [dm3] 2R_6466825_SNP [dm6]	C	T	8.559e^-6	0.929	INTERGENIC	transposable element FlyBase
3R	7295113	3R_7295113_SNP [dm3] 3R_11469391_SNP [dm6]	G	C	9.317e^-6	0.929	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	26774663	3R_26774663_SNP [dm3] 3R_30948941_SNP [dm6]	A	C	9.515e^-6	0.929	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	16124953	2R_16124953_SNP [dm3] 2R_20237448_SNP [dm6]	C	T	9.522e^-6	0.929	INTRON CG11099
2L	17906969	2L_17906969_DEL [dm3] 2L_17906969_DEL [dm6]	TCATAATTTCTTCTTCT...	T	1.107e^-5	0.929	INTERGENIC
2L	17764655	2L_17764655_INS [dm3] 2L_17764655_INS [dm6]	A	AA	1.299e^-5	0.929	INTRON CadN	TF binding site mE1_TFBS_HSA
3R	11951243	3R_11951243_SNP [dm3] 3R_16125521_SNP [dm6]	T	A	1.314e^-5	0.929	INTRON Sb
2R	6462227	2R_6462227_SNP [dm3] 2R_10574722_SNP [dm6]	A	G	1.408e^-5	0.929	INTRON psq	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	19021769	2R_19021769_SNP [dm3] 2R_23134246_SNP [dm6]	G	T	1.461e^-5	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	17906967	2L_17906967_SNP [dm3] 2L_17906967_SNP [dm6]	T	A	1.485e^-5	0.929	INTERGENIC
3L	18692532	3L_18692532_SNP [dm3] 3L_18699432_SNP [dm6]	T	C	1.536e^-5	0.929	INTERGENIC
3L	15100452	3L_15100452_DEL [dm3] 3L_15107352_DEL [dm6]	ACA	A	1.563e^-5	0.929	DOWNSTREAM CR43971 INTRON CTPsyn & 1 other	TF binding site BDTNP1_TFBS_dl
3R	26747077	3R_26747077_SNP [dm3] 3R_30921355_SNP [dm6]	A	G	1.631e^-5	0.929	UPSTREAM CR44041 INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25289339	3R_25289339_SNP [dm3] 3R_29463617_SNP [dm6]	C	G	1.646e^-5	0.929	INTRON Ptp99A	TF binding site mE1_TFBS_cad
3R	13452209	3R_13452209_SNP [dm3] 3R_17626487_SNP [dm6]	C	G	1.740e^-5	0.929	UPSTREAM CG14325 DOWNSTREAM AttD INTERGENIC
X	21959583	X_21959583_SNP [dm3] X_22557747_SNP [dm6]	A	T	1.807e^-5	0.929	INTERGENIC	transposable element FlyBase
2R	6462465	2R_6462465_SNP [dm3] 2R_10574960_SNP [dm6]	C	A	1.898e^-5	0.929	INTRON psq	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	6180252	2R_6180252_SNP [dm3] 2R_10292747_SNP [dm6]	G	C	1.926e^-5	0.929	NON_SYNONYMOUS_CODING CAP UTR_5_PRIME CAP INTRON CAP	TF binding site mE1_TFBS_chinmo
2R	6462335	2R_6462335_DEL [dm3] 2R_10574830_DEL [dm6]	AA	A	1.962e^-5	0.929	INTRON psq	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	7639866	2R_7639866_SNP [dm3] 2R_11752361_SNP [dm6]	T	G	2.034e^-5	0.929	INTERGENIC
2R	6462526	2R_6462526_SNP [dm3] 2R_10575021_SNP [dm6]	A	G	2.051e^-5	0.929	INTRON psq	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	16125558	X_16125558_SNP [dm3] X_16231525_SNP [dm6]	G	A	2.066e^-5	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	8800895	3L_8800895_SNP [dm3] 3L_8807795_SNP [dm6]	A	G	2.077e^-5	0.929	SYNONYMOUS_CODING CG32024 UPSTREAM CG13312 & 1 other
2R	16232315	2R_16232315_SNP [dm3] 2R_20344810_SNP [dm6]	C	T	2.079e^-5	0.929	SYNONYMOUS_CODING CG13870	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15101374	3L_15101374_SNP [dm3] 3L_15108274_SNP [dm6]	C	T	2.115e^-5	0.929	INTRON CTPsyn & 1 other EXON CR43971	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	15868743	2R_15868743_SNP [dm3] 2R_19981238_SNP [dm6]	T	C	2.157e^-5	0.929	UTR_5_PRIME CG8654 UPSTREAM CG8654 INTRON CG8654
3L	4541265	3L_4541265_SNP [dm3] 3L_4541265_SNP [dm6]	T	C	2.165e^-5	0.929	UPSTREAM CG11357 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	17708921	3R_17708921_SNP [dm3] 3R_21883199_SNP [dm6]	C	T	2.391e^-5	0.929	DOWNSTREAM fit INTRON CG31465 EXON CR45046	TF binding site mE1_TFBS_HSA
2R	16128016	2R_16128016_SNP [dm3] 2R_20240511_SNP [dm6]	C	T	2.423e^-5	0.929	SYNONYMOUS_CODING Efhc1.2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26747079	3R_26747079_MNP [dm3] 3R_30921357_MNP [dm6]	CCC	GGG	2.478e^-5	0.929	UPSTREAM CR44041 INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26747083	3R_26747083_SNP [dm3] 3R_30921361_SNP [dm6]	C	T	2.483e^-5	0.929	UPSTREAM CR44041 INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11378416	3L_11378416_INS [dm3] 3L_11385316_INS [dm6]	C	CT	2.500e^-5	0.929	INTERGENIC	TF binding site mE1_TFBS_inv
2R	14342999	2R_14342999_SNP [dm3] 2R_18455494_SNP [dm6]	T	A	2.525e^-5	0.929	INTERGENIC
2R	14343000	2R_14343000_SNP [dm3] 2R_18455495_SNP [dm6]	A	G	2.525e^-5	0.929	INTERGENIC
2R	14343015	2R_14343015_SNP [dm3] 2R_18455510_SNP [dm6]	T	C	2.525e^-5	0.929	INTERGENIC
3L	13983684	3L_13983684_SNP [dm3] 3L_13990584_SNP [dm6]	G	A	2.533e^-5	0.929	INTRON CG17364
2R	7655994	2R_7655994_SNP [dm3] 2R_11768489_SNP [dm6]	C	A	2.627e^-5	0.929	NON_SYNONYMOUS_CODING CG13193 INTRON ths
2R	14343024	2R_14343024_SNP [dm3] 2R_18455519_SNP [dm6]	A	G	2.792e^-5	0.929	INTERGENIC
X	21959897	X_21959897_SNP [dm3] X_22558061_SNP [dm6]	C	A	2.797e^-5	0.929	INTERGENIC	transposable element FlyBase
3L	8680773	3L_8680773_SNP [dm3] 3L_8687673_SNP [dm6]	C	T	2.823e^-5	0.929	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14343007	2R_14343007_SNP [dm3] 2R_18455502_SNP [dm6]	C	G	2.923e^-5	0.929	INTERGENIC
2R	18462905	2R_18462905_SNP [dm3] 2R_22575400_SNP [dm6]	C	A	2.963e^-5	0.929	INTRON dnr1
2L	4816980	2L_4816980_SNP [dm3] 2L_4816980_SNP [dm6]	G	T	3.085e^-5	0.929	SYNONYMOUS_CODING CG3225 DOWNSTREAM mir-4910	TF binding site mE1_TFBS_sens
2L	4817004	2L_4817004_SNP [dm3] 2L_4817004_SNP [dm6]	C	G	3.085e^-5	0.929	SYNONYMOUS_CODING CG3225 DOWNSTREAM mir-4910	TF binding site mE1_TFBS_sens
2R	6462489	2R_6462489_SNP [dm3] 2R_10574984_SNP [dm6]	T	A	3.124e^-5	0.929	INTRON psq	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	12165480	X_12165480_DEL [dm3] X_12271447_DEL [dm6]	AATATCT	A	3.171e^-5	0.929	INTRON Ten-a
3L	8805918	3L_8805918_SNP [dm3] 3L_8812818_SNP [dm6]	A	G	3.176e^-5	0.929	INTERGENIC
2L	17242708	2L_17242708_SNP [dm3] 2L_17242708_SNP [dm6]	C	A	3.199e^-5	0.929	INTRON beat-IIIc
3L	6447630	3L_6447630_SNP [dm3] 3L_6454530_SNP [dm6]	A	G	3.224e^-5	0.929	INTRON CG42747
X	16125556	X_16125556_SNP [dm3] X_16231523_SNP [dm6]	G	A	3.330e^-5	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	16868534	3R_16868534_SNP [dm3] 3R_21042812_SNP [dm6]	C	A	3.362e^-5	0.929	UPSTREAM Dhc93AB INTERGENIC
3R	25178678	3R_25178678_SNP [dm3] 3R_29352956_SNP [dm6]	C	T	3.388e^-5	0.929	INTERGENIC
3L	18679406	3L_18679406_SNP [dm3] 3L_18686306_SNP [dm6]	C	T	3.408e^-5	0.929	UTR_5_PRIME Cyp12c1
2R	19021368	2R_19021368_SNP [dm3] 2R_23133845_SNP [dm6]	T	C	3.410e^-5	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	4662626	3L_4662626_SNP [dm3] 3L_4662626_SNP [dm6]	G	A	3.434e^-5	0.929	INTRON axo
2R	6462395	2R_6462395_INS [dm3] 2R_10574890_INS [dm6]	A	ATACATGA	3.446e^-5	0.929	INTRON psq	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	10657565	3L_10657565_SNP [dm3] 3L_10664465_SNP [dm6]	A	C	3.658e^-5	0.929	UPSTREAM simj DOWNSTREAM CG32068 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
2R	16127325	2R_16127325_SNP [dm3] 2R_20239820_SNP [dm6]	T	A	3.736e^-5	0.929	UPSTREAM Efhc1.2 & 1 other DOWNSTREAM CG11099 INTERGENIC
3R	22804050	3R_22804050_SNP [dm3] 3R_26978328_SNP [dm6]	G	T	3.879e^-5	0.929	UPSTREAM CG14253 DOWNSTREAM CG5521 INTERGENIC
3R	25286568	3R_25286568_SNP [dm3] 3R_29460846_SNP [dm6]	T	C	4.078e^-5	0.929	INTRON Ptp99A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	10657603	3L_10657603_SNP [dm3] 3L_10664503_SNP [dm6]	A	T	4.198e^-5	0.929	UPSTREAM simj DOWNSTREAM CG32068 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	7659872	2R_7659872_SNP [dm3] 2R_11772367_SNP [dm6]	T	G	4.249e^-5	0.929	INTRON ths
3R	14581416	3R_14581416_SNP [dm3] 3R_18755694_SNP [dm6]	G	C	4.270e^-5	0.929	SYNONYMOUS_CODING CG14299
3R	26742638	3R_26742638_SNP [dm3] 3R_30916916_SNP [dm6]	G	C	4.272e^-5	0.929	INTRON Ptx1
2R	6462390	2R_6462390_SNP [dm3] 2R_10574885_SNP [dm6]	T	A	4.313e^-5	0.929	INTRON psq	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	1995627	3L_1995627_SNP [dm3] 3L_1995627_SNP [dm6]	C	T	4.431e^-5	0.929	INTERGENIC
2R	12633118	2R_12633118_SNP [dm3] 2R_16745613_SNP [dm6]	G	A	4.433e^-5	0.929	UTR_3_PRIME CG15617 UPSTREAM Sfp53D	TF binding site mE1_TFBS_cad
3L	3928617	3L_3928617_SNP [dm3] 3L_3928617_SNP [dm6]	C	T	4.492e^-5	0.929	INTRON Eip63F-1
2R	11460979	2R_11460979_SNP [dm3] 2R_15573474_SNP [dm6]	C	G	4.522e^-5	0.929	NON_SYNONYMOUS_CODING CG8204 DOWNSTREAM CG30466	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	17252796	2L_17252796_SNP [dm3] 2L_17252796_SNP [dm6]	A	T	4.585e^-5	0.929	INTRON beat-IIIc
3R	24484530	3R_24484530_SNP [dm3] 3R_28658808_SNP [dm6]	C	T	4.648e^-5	0.929	INTERGENIC
2L	17223725	2L_17223725_DEL [dm3] 2L_17223725_DEL [dm6]	CATATGTCCCGA...	C	4.824e^-5	0.929	INTRON beat-IIIc	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	1789815	2L_1789815_SNP [dm3] 2L_1789815_SNP [dm6]	C	T	4.828e^-5	0.929	NON_SYNONYMOUS_CODING Gr22d DOWNSTREAM Gr22c	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12633116	2R_12633116_SNP [dm3] 2R_16745611_SNP [dm6]	G	A	4.909e^-5	0.929	UTR_3_PRIME CG15617 UPSTREAM Sfp53D	TF binding site mE1_TFBS_cad
X	21960418	X_21960418_SNP [dm3] X_22558582_SNP [dm6]	A	G	4.926e^-5	0.929	INTERGENIC	transposable element FlyBase
3R	17296567	3R_17296567_INS [dm3] 3R_21470845_INS [dm6]	A	AA	5.005e^-5	0.929	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	22247220	X_22247220_SNP [dm3] X_22845384_SNP [dm6]	C	T	5.018e^-5	0.929	INTRON fog & 1 other
2R	7643659	2R_7643659_SNP [dm3] 2R_11756154_SNP [dm6]	T	A	5.185e^-5	0.929	UPSTREAM ths INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	16810119	2R_16810119_SNP [dm3] 2R_20922614_SNP [dm6]	C	A	5.244e^-5	0.929	SYNONYMOUS_CODING Rx	TF binding site mE1_TFBS_chinmo
2R	16799849	2R_16799849_SNP [dm3] 2R_20912344_SNP [dm6]	C	G	5.251e^-5	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	15099600	3L_15099600_DEL [dm3] 3L_15106500_DEL [dm6]	GGAG	G	5.273e^-5	0.929	INTRON CTPsyn & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	15408882	X_15408882_SNP [dm3] X_15514849_SNP [dm6]	A	T	5.281e^-5	0.929	SYNONYMOUS_CODING Ac13E	TF binding site mE1_TFBS_chinmo
3R	22360182	3R_22360182_INS [dm3] 3R_26534460_INS [dm6]	T	TT	5.284e^-5	0.929	INTRON plum	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11894279	3R_11894279_SNP [dm3] 3R_16068557_SNP [dm6]	C	T	5.320e^-5	0.929	UTR_3_PRIME Mhcl UPSTREAM CG10185
2R	16799878	2R_16799878_SNP [dm3] 2R_20912373_SNP [dm6]	C	T	5.359e^-5	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	21960311	X_21960311_SNP [dm3] X_22558475_SNP [dm6]	G	C	5.363e^-5	0.929	INTERGENIC	transposable element FlyBase
X	10041409	X_10041409_SNP [dm3] X_10147376_SNP [dm6]	A	G	5.390e^-5	0.929	INTRON CR44894 & 1 other
3R	22804047	3R_22804047_SNP [dm3] 3R_26978325_SNP [dm6]	T	A	5.481e^-5	0.929	UPSTREAM CG14253 DOWNSTREAM CG5521 INTERGENIC
3L	18687099	3L_18687099_SNP [dm3] 3L_18693999_SNP [dm6]	A	G	5.644e^-5	0.929	UPSTREAM CG6893 & 1 other INTERGENIC
X	12165487	X_12165487_INS [dm3] X_12271454_INS [dm6]	T	TCACCAA	5.715e^-5	0.929	INTRON Ten-a
3R	22813939	3R_22813939_SNP [dm3] 3R_26988217_SNP [dm6]	A	G	5.748e^-5	0.929	UPSTREAM CG31075 DOWNSTREAM CG31076 INTRON CG31075
2R	17858027	2R_17858027_SNP [dm3] 2R_21970522_SNP [dm6]	A	G	5.799e^-5	0.929	DOWNSTREAM CG34029 INTRON ppk9
2L	713436	2L_713436_SNP [dm3] 2L_713436_SNP [dm6]	T	C	5.819e^-5	0.929	INTRON ds & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
3L	6447626	3L_6447626_SNP [dm3] 3L_6454526_SNP [dm6]	C	T	5.824e^-5	0.929	INTRON CG42747
X	19951750	X_19951750_INS [dm3] X_20057717_INS [dm6]	T	TT	5.880e^-5	0.929	INTRON Dop2R
2R	7634642	2R_7634642_SNP [dm3] 2R_11747137_SNP [dm6]	T	C	5.946e^-5	0.929	INTERGENIC
2R	19280642	2R_19280642_SNP [dm3] 2R_23393119_SNP [dm6]	T	A	6.004e^-5	0.929	START_GAINED CG3530 UTR_5_PRIME CG3530 INTRON CG3530	TF binding site mE1_TFBS_chinmo
2L	16609598	2L_16609598_SNP [dm3] 2L_16609598_SNP [dm6]	C	G	6.033e^-5	0.929	NON_SYNONYMOUS_CODING CG4631 INTRON CG42389
2R	5864857	2R_5864857_SNP [dm3] 2R_9977352_SNP [dm6]	A	G	6.111e^-5	0.929	EXON CR43948	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14704754	3R_14704754_SNP [dm3] 3R_18879032_SNP [dm6]	A	G	6.146e^-5	0.929	INTERGENIC
2L	6334064	2L_6334064_SNP [dm3] 2L_6334064_SNP [dm6]	A	G	6.183e^-5	0.929	INTRON Pez	TF binding site mE1_TFBS_cad
2R	1998063	2R_1998063_SNP [dm3] 2R_6110558_SNP [dm6]	G	A	6.204e^-5	0.929	INTRON EcR
3R	11978173	3R_11978173_SNP [dm3] 3R_16152451_SNP [dm6]	C	A	6.228e^-5	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	3219502	X_3219502_SNP [dm3] X_3325469_SNP [dm6]	G	A	6.308e^-5	0.929	INTRON CR44886 & 1 other
3L	3940103	3L_3940103_SNP [dm3] 3L_3940103_SNP [dm6]	G	A	6.330e^-5	0.929	UTR_5_PRIME CG12766 UPSTREAM CR43916 DOWNSTREAM CG10863
2R	6462466	2R_6462466_SNP [dm3] 2R_10574961_SNP [dm6]	A	G	6.428e^-5	0.929	INTRON psq	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	6955217	2L_6955217_SNP [dm3] 2L_6955217_SNP [dm6]	T	C	6.435e^-5	0.929	DOWNSTREAM SA INTRON CG13775
2L	6334049	2L_6334049_SNP [dm3] 2L_6334049_SNP [dm6]	T	G	6.452e^-5	0.929	INTRON Pez	TF binding site mE1_TFBS_cad
2R	5974710	2R_5974710_SNP [dm3] 2R_10087205_SNP [dm6]	G	T	6.477e^-5	0.929	UPSTREAM CG2269 & 1 other INTRON CG2269
2R	12633102	2R_12633102_SNP [dm3] 2R_16745597_SNP [dm6]	G	A	6.505e^-5	0.929	UTR_3_PRIME CG15617 UPSTREAM Sfp53D	TF binding site mE1_TFBS_cad
2L	6955208	2L_6955208_SNP [dm3] 2L_6955208_SNP [dm6]	C	T	6.513e^-5	0.929	DOWNSTREAM SA INTRON CG13775
X	6178419	X_6178419_SNP [dm3] X_6284386_SNP [dm6]	T	G	6.521e^-5	0.929	UTR_3_PRIME Top3beta UPSTREAM CG11700 DOWNSTREAM Top3beta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2L	1206161	2L_1206161_SNP [dm3] 2L_1206161_SNP [dm6]	A	C	6.536e^-5	0.929	DOWNSTREAM CG14342 INTERGENIC
3L	5252559	3L_5252559_SNP [dm3] 3L_5259459_SNP [dm6]	C	G	6.628e^-5	0.929	INTRON shep
X	21950763	X_21950763_SNP [dm3] X_22548927_SNP [dm6]	G	A	6.667e^-5	0.929	DOWNSTREAM CG17601 INTERGENIC
X	21959765	X_21959765_SNP [dm3] X_22557929_SNP [dm6]	A	G	6.695e^-5	0.929	INTERGENIC	transposable element FlyBase
2L	17038080	2L_17038080_SNP [dm3] 2L_17038080_SNP [dm6]	A	C	6.728e^-5	0.929	INTERGENIC
2R	11179286	2R_11179286_DEL [dm3] 2R_15291781_DEL [dm6]	ACGAAACTAGAGTCAATCCT...	A	6.731e^-5	0.929	UPSTREAM Trpm INTRON Trpm
2L	17221587	2L_17221587_SNP [dm3] 2L_17221587_SNP [dm6]	C	T	6.742e^-5	0.929	INTRON beat-IIIc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7657388	2R_7657388_SNP [dm3] 2R_11769883_SNP [dm6]	G	A	6.749e^-5	0.929	DOWNSTREAM CG13193 INTRON ths	TF binding site mE1_TFBS_cad
3L	10657608	3L_10657608_SNP [dm3] 3L_10664508_SNP [dm6]	A	T	6.767e^-5	0.929	UPSTREAM simj DOWNSTREAM CG32068 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	7323398	2R_7323398_SNP [dm3] 2R_11435893_SNP [dm6]	T	G	6.805e^-5	0.929	UPSTREAM CG7777 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk
2R	7642575	2R_7642575_SNP [dm3] 2R_11755070_SNP [dm6]	C	T	6.813e^-5	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	19198864	2R_19198864_SNP [dm3] 2R_23311341_SNP [dm6]	C	T	6.876e^-5	0.929	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	3928631	3L_3928631_SNP [dm3] 3L_3928631_SNP [dm6]	A	T	6.896e^-5	0.929	INTRON Eip63F-1
2R	14343021	2R_14343021_SNP [dm3] 2R_18455516_SNP [dm6]	T	A	6.981e^-5	0.929	INTERGENIC
2R	16254268	2R_16254268_SNP [dm3] 2R_20366763_SNP [dm6]	A	C	7.005e^-5	0.929	INTERGENIC
3R	22876344	3R_22876344_SNP [dm3] 3R_27050622_SNP [dm6]	G	C	7.053e^-5	0.929	UTR_3_PRIME TwdlT INTRON RYa-R
3R	22804045	3R_22804045_SNP [dm3] 3R_26978323_SNP [dm6]	T	C	7.083e^-5	0.929	UPSTREAM CG14253 DOWNSTREAM CG5521 INTERGENIC
2L	3695958	2L_3695958_SNP [dm3] 2L_3695958_SNP [dm6]	T	C	7.101e^-5	0.929	UPSTREAM CG43165 & 1 other DOWNSTREAM CG16712 INTERGENIC
2L	16606604	2L_16606604_SNP [dm3] 2L_16606604_SNP [dm6]	G	A	7.134e^-5	0.929	NON_SYNONYMOUS_CODING CG31815 UPSTREAM CG4631 INTRON CG42389
3R	26774621	3R_26774621_SNP [dm3] 3R_30948899_SNP [dm6]	G	C	7.238e^-5	0.929	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	16125577	2R_16125577_SNP [dm3] 2R_20238072_SNP [dm6]	A	C	7.283e^-5	0.929	DOWNSTREAM CG13869 INTRON CG11099
3R	16018752	3R_16018752_SNP [dm3] 3R_20193030_SNP [dm6]	T	A	7.346e^-5	0.929	INTERGENIC
3L	6447634	3L_6447634_SNP [dm3] 3L_6454534_SNP [dm6]	T	G	7.361e^-5	0.929	INTRON CG42747
2R	12633090	2R_12633090_SNP [dm3] 2R_16745585_SNP [dm6]	C	A	7.411e^-5	0.929	UTR_3_PRIME CG15617 UPSTREAM Sfp53D	TF binding site mE1_TFBS_cad
X	6120045	X_6120045_SNP [dm3] X_6226012_SNP [dm6]	T	A	7.472e^-5	0.929	UTR_5_PRIME CG14446 UPSTREAM sqh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3R	17709143	3R_17709143_SNP [dm3] 3R_21883421_SNP [dm6]	C	T	7.489e^-5	0.929	NON_SYNONYMOUS_CODING CG31465 UTR_3_PRIME CG31465 DOWNSTREAM fit EXON CR45046	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14048236	2L_14048236_SNP [dm3] 2L_14048236_SNP [dm6]	G	A	7.569e^-5	0.929	SYNONYMOUS_CODING NimC4 INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	5224261	3L_5224261_INS [dm3] 3L_5231161_INS [dm6]	T	TTT	7.583e^-5	0.929	INTRON shep
X	2085522	X_2085522_SNP [dm3] X_2191489_SNP [dm6]	G	A	7.595e^-5	0.929	DOWNSTREAM CG14053 INTRON Mct1
2L	6955539	2L_6955539_SNP [dm3] 2L_6955539_SNP [dm6]	A	G	7.645e^-5	0.929	SYNONYMOUS_CODING CG13775 DOWNSTREAM SA	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14884138	2L_14884138_SNP [dm3] 2L_14884138_SNP [dm6]	G	C	7.705e^-5	0.929	UPSTREAM Mst35Bb & 1 other INTERGENIC
2R	19021708	2R_19021708_SNP [dm3] 2R_23134185_SNP [dm6]	G	T	7.735e^-5	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	12837995	3L_12837995_SNP [dm3] 3L_12844895_SNP [dm6]	T	C	7.799e^-5	0.929	SYNONYMOUS_CODING CG10948 UTR_3_PRIME CG10948
2R	2353224	2R_2353224_SNP [dm3] 2R_6465719_SNP [dm6]	G	A	7.844e^-5	0.929	INTERGENIC	transposable element FlyBase
3L	1682981	3L_1682981_SNP [dm3] 3L_1682981_SNP [dm6]	T	C	7.872e^-5	0.929	INTRON CG7991
2R	11683136	2R_11683136_SNP [dm3] 2R_15795631_SNP [dm6]	C	T	7.891e^-5	0.929	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	3958698	3L_3958698_SNP [dm3] 3L_3958698_SNP [dm6]	G	C	7.936e^-5	0.929	SYNONYMOUS_CODING CG12605	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	6121766	2L_6121766_DEL [dm3] 2L_6121766_DEL [dm6]	CTCC	C	7.992e^-5	0.929	SPLICE_SITE_REGION stai INTRON stai
3R	26325481	3R_26325481_DEL [dm3] 3R_30499759_DEL [dm6]	GGGACTCTG	G	8.045e^-5	0.929	INTRON PH4alphaNE1
3R	17743553	3R_17743553_SNP [dm3] 3R_21917831_SNP [dm6]	A	C	8.082e^-5	0.929	INTERGENIC
3R	25150994	3R_25150994_SNP [dm3] 3R_29325272_SNP [dm6]	C	G	8.123e^-5	0.929	INTERGENIC
3L	1024312	3L_1024312_SNP [dm3] 3L_1024312_SNP [dm6]	G	A	8.212e^-5	0.929	SYNONYMOUS_CODING trio	TF binding site mE1_TFBS_cad
3R	26774637	3R_26774637_SNP [dm3] 3R_30948915_SNP [dm6]	A	G	8.234e^-5	0.929	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	18995533	2R_18995533_SNP [dm3] 2R_23108010_SNP [dm6]	C	T	8.270e^-5	0.929	INTERGENIC
2L	17113969	2L_17113969_SNP [dm3] 2L_17113969_SNP [dm6]	A	T	8.321e^-5	0.929	INTERGENIC
2R	15754452	2R_15754452_SNP [dm3] 2R_19866947_SNP [dm6]	C	G	8.445e^-5	0.929	INTRON Obp56i
X	21952916	X_21952916_SNP [dm3] X_22551080_SNP [dm6]	C	T	8.460e^-5	0.929	INTERGENIC
2L	11974604	2L_11974604_SNP [dm3] 2L_11974604_SNP [dm6]	A	G	8.578e^-5	0.929	INTERGENIC
2R	18462268	2R_18462268_DEL [dm3] 2R_22574763_DEL [dm6]	GTG	G	8.591e^-5	0.929	INTRON dnr1
3R	4882780	3R_4882780_SNP [dm3] 3R_9057058_SNP [dm6]	T	A	8.624e^-5	0.929	INTRON Kdm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	5378341	3L_5378341_SNP [dm3] 3L_5385241_SNP [dm6]	T	C	8.697e^-5	0.929	INTERGENIC
2R	7634532	2R_7634532_SNP [dm3] 2R_11747027_SNP [dm6]	A	T	8.795e^-5	0.929	INTERGENIC
3R	22359303	3R_22359303_SNP [dm3] 3R_26533581_SNP [dm6]	G	A	8.852e^-5	0.929	INTRON plum
3L	1875706	3L_1875706_SNP [dm3] 3L_1875706_SNP [dm6]	C	T	8.866e^-5	0.929	SYNONYMOUS_CODING dre4 DOWNSTREAM CG13937	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18685844	3L_18685844_MNP [dm3] 3L_18692744_MNP [dm6]	AGGG	TTAC	8.941e^-5	0.929	DOWNSTREAM CR43987 INTERGENIC
3L	5261731	3L_5261731_SNP [dm3] 3L_5268631_SNP [dm6]	T	A	9.012e^-5	0.929	INTRON shep
2R	6462384	2R_6462384_SNP [dm3] 2R_10574879_SNP [dm6]	T	A	9.084e^-5	0.929	INTRON psq	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	22498445	3R_22498445_SNP [dm3] 3R_26672723_SNP [dm6]	A	G	9.163e^-5	0.929	INTRON beat-VII
2R	16296968	2R_16296968_SNP [dm3] 2R_20409463_SNP [dm6]	C	T	9.171e^-5	0.929	INTERGENIC
2R	7659423	2R_7659423_DEL [dm3] 2R_11771918_DEL [dm6]	TA	T	9.200e^-5	0.929	INTRON ths
2R	16297158	2R_16297158_SNP [dm3] 2R_20409653_SNP [dm6]	G	T	9.221e^-5	0.929	INTERGENIC
2R	3832712	2R_3832712_SNP [dm3] 2R_7945207_SNP [dm6]	G	C	9.232e^-5	0.929	NON_SYNONYMOUS_CODING CG34431 DOWNSTREAM CG34430 INTRON CG14764
2L	6178073	2L_6178073_DEL [dm3] 2L_6178073_DEL [dm6]	AA	A	9.342e^-5	0.929	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	19017581	2R_19017581_SNP [dm3] 2R_23130058_SNP [dm6]	A	G	9.357e^-5	0.929	SYNONYMOUS_CODING CG3215
X	12165465	X_12165465_SNP [dm3] X_12271432_SNP [dm6]	G	A	9.380e^-5	0.929	INTRON Ten-a
X	21959781	X_21959781_SNP [dm3] X_22557945_SNP [dm6]	T	C	9.384e^-5	0.929	INTERGENIC	transposable element FlyBase
2R	7643446	2R_7643446_SNP [dm3] 2R_11755941_SNP [dm6]	A	C	9.424e^-5	0.929	UPSTREAM ths INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	6447641	3L_6447641_SNP [dm3] 3L_6454541_SNP [dm6]	G	T	9.544e^-5	0.929	INTRON CG42747
3R	27006865	3R_27006865_SNP [dm3] 3R_31181143_SNP [dm6]	T	C	9.548e^-5	0.929	SYNONYMOUS_CODING mesh
2L	6334050	2L_6334050_SNP [dm3] 2L_6334050_SNP [dm6]	G	A	9.699e^-5	0.929	INTRON Pez	TF binding site mE1_TFBS_cad
X	21975213	X_21975213_SNP [dm3] X_22573377_SNP [dm6]	C	T	9.743e^-5	0.929	INTERGENIC
3L	15876944	3L_15876944_SNP [dm3] 3L_15883844_SNP [dm6]	A	C	9.747e^-5	0.929	DOWNSTREAM CR44050 INTRON pHCl
2R	10005909	2R_10005909_SNP [dm3] 2R_14118404_SNP [dm6]	G	A	9.762e^-5	0.929	INTRON Prosap
2L	17243692	2L_17243692_SNP [dm3] 2L_17243692_SNP [dm6]	G	A	9.771e^-5	0.929	INTRON beat-IIIc
2L	17223002	2L_17223002_SNP [dm3] 2L_17223002_SNP [dm6]	G	A	9.885e^-5	0.929	INTRON beat-IIIc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12165466	X_12165466_SNP [dm3] X_12271433_SNP [dm6]	G	A	9.897e^-5	0.929	INTRON Ten-a
2L	1785424	2L_1785424_SNP [dm3] 2L_1785424_SNP [dm6]	A	G	9.908e^-5	0.929	DOWNSTREAM Gr22e INTERGENIC
2R	19508539	2R_19508539_DEL [dm3] 2R_23621016_DEL [dm6]	TGGAGCTCGGGTAT...	T	9.964e^-5	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17386870	2R_17386870_SNP [dm3] 2R_21499365_SNP [dm6]	C	T	1.003e^-4	0.93	SYNONYMOUS_CODING TAF1C-like	TF binding site mE1_TFBS_sens
3R	23870688	3R_23870688_SNP [dm3] 3R_28044966_SNP [dm6]	G	T	1.010e^-4	0.93	INTRON CG34362
3R	4673716	3R_4673716_SNP [dm3] 3R_8847994_SNP [dm6]	T	A	1.011e^-4	0.93	INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	14686212	X_14686212_SNP [dm3] X_14792179_SNP [dm6]	A	G	1.028e^-4	0.932	SYNONYMOUS_CODING rut INTRON rut	TF binding site mE1_TFBS_chinmo
X	21975272	X_21975272_SNP [dm3] X_22573436_SNP [dm6]	C	T	1.029e^-4	0.932	INTERGENIC
2L	9614421	2L_9614421_SNP [dm3] 2L_9614421_SNP [dm6]	G	A	1.038e^-4	0.932	INTRON Trx-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	11378111	3L_11378111_SNP [dm3] 3L_11385011_SNP [dm6]	A	T	1.040e^-4	0.932	UPSTREAM CR42755 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	2535453	3L_2535453_SNP [dm3] 3L_2535453_SNP [dm6]	T	G	1.053e^-4	0.932	SYNONYMOUS_CODING Spn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1790735	2L_1790735_SNP [dm3] 2L_1790735_SNP [dm6]	T	G	1.063e^-4	0.932	NON_SYNONYMOUS_CODING Gr22c UPSTREAM Gr22d
3R	11378878	3R_11378878_INS [dm3] 3R_15553156_INS [dm6]	C	CAA	1.067e^-4	0.932	UPSTREAM CG18516 INTERGENIC
X	16865802	X_16865802_DEL [dm3] X_16971769_DEL [dm6]	TGCCATTTGGAT...	T	1.067e^-4	0.932	UTR_3_PRIME CG45002
2R	19021333	2R_19021333_SNP [dm3] 2R_23133810_SNP [dm6]	T	C	1.075e^-4	0.932	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	7651532	2R_7651532_SNP [dm3] 2R_11764027_SNP [dm6]	A	G	1.079e^-4	0.932	INTRON ths
2R	2354140	2R_2354140_SNP [dm3] 2R_6466635_SNP [dm6]	C	T	1.090e^-4	0.932	INTERGENIC	transposable element FlyBase
3R	26109801	3R_26109801_SNP [dm3] 3R_30284079_SNP [dm6]	C	T	1.091e^-4	0.932	INTRON hdc
3R	16490429	3R_16490429_SNP [dm3] 3R_20664707_SNP [dm6]	T	A	1.092e^-4	0.932	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3529893	2L_3529893_SNP [dm3] 2L_3529893_SNP [dm6]	G	C	1.094e^-4	0.932	NON_SYNONYMOUS_CODING Spindly UPSTREAM Che-13	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_sens
3L	15102822	3L_15102822_SNP [dm3] 3L_15109722_SNP [dm6]	G	A	1.097e^-4	0.932	SYNONYMOUS_CODING CG45071 UPSTREAM CR43971 INTRON CTPsyn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22285586	3L_22285586_SNP [dm3] 3L_22292486_SNP [dm6]	A	G	1.099e^-4	0.932	NON_SYNONYMOUS_CODING Aats-ile DOWNSTREAM Ten-m	TF binding site mE1_TFBS_sens
3R	26734717	3R_26734717_SNP [dm3] 3R_30908995_SNP [dm6]	C	T	1.113e^-4	0.932	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18923843	2R_18923843_SNP [dm3] 2R_23036320_SNP [dm6]	A	C	1.116e^-4	0.932	INTRON twi & 1 other	TF binding site mE1_TFBS_inv
3L	1875721	3L_1875721_SNP [dm3] 3L_1875721_SNP [dm6]	T	C	1.123e^-4	0.932	SYNONYMOUS_CODING dre4 DOWNSTREAM CG13937	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11881848	3L_11881848_SNP [dm3] 3L_11888748_SNP [dm6]	C	A	1.124e^-4	0.932	NON_SYNONYMOUS_CODING CG5897 INTRON CG44837	TF binding site mE1_TFBS_sens
2L	17051921	2L_17051921_INS [dm3] 2L_17051921_INS [dm6]	T	TTGGT	1.140e^-4	0.932	INTERGENIC
2R	15482141	2R_15482141_SNP [dm3] 2R_19594636_SNP [dm6]	T	A	1.141e^-4	0.932	SPLICE_SITE_REGION CG16716 INTRON sm & 1 other
X	21959893	X_21959893_SNP [dm3] X_22558057_SNP [dm6]	G	A	1.158e^-4	0.932	INTERGENIC	transposable element FlyBase
X	21975222	X_21975222_INS [dm3] X_22573386_INS [dm6]	G	CC	1.170e^-4	0.932	INTERGENIC
3L	16912504	3L_16912504_SNP [dm3] 3L_16919404_SNP [dm6]	G	C	1.172e^-4	0.932	INTRON Lmpt
3L	3865444	3L_3865444_SNP [dm3] 3L_3865444_SNP [dm6]	G	A	1.176e^-4	0.932	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25895946	3R_25895946_DEL [dm3] 3R_30070224_DEL [dm6]	GGT	G	1.180e^-4	0.932	INTRON sima
3L	5262934	3L_5262934_DEL [dm3] 3L_5269834_DEL [dm6]	AG	A	1.184e^-4	0.932	INTRON shep
3L	4638764	3L_4638764_SNP [dm3] 3L_4638764_SNP [dm6]	G	T	1.198e^-4	0.932	INTRON axo
3R	17296560	3R_17296560_SNP [dm3] 3R_21470838_SNP [dm6]	T	A	1.200e^-4	0.932	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10842682	X_10842682_SNP [dm3] X_10948649_SNP [dm6]	T	C	1.201e^-4	0.932	INTRON Myo10A	TF binding site mE1_TFBS_cad
3L	3864639	3L_3864639_SNP [dm3] 3L_3864639_SNP [dm6]	A	T	1.215e^-4	0.932	UPSTREAM CR45379 INTERGENIC
2R	18995530	2R_18995530_SNP [dm3] 2R_23108007_SNP [dm6]	C	A	1.216e^-4	0.932	INTERGENIC
2L	4816080	2L_4816080_SNP [dm3] 2L_4816080_SNP [dm6]	A	C	1.220e^-4	0.932	SYNONYMOUS_CODING CG3225 DOWNSTREAM CG15629	TF binding site mE1_TFBS_inv
X	21975125	X_21975125_SNP [dm3] X_22573289_SNP [dm6]	T	C	1.220e^-4	0.932	INTERGENIC
2L	4691806	2L_4691806_SNP [dm3] 2L_4691806_SNP [dm6]	A	T	1.221e^-4	0.932	INTERGENIC
2L	17889946	2L_17889946_SNP [dm3] 2L_17889946_SNP [dm6]	A	G	1.221e^-4	0.932	INTERGENIC
2L	6956490	2L_6956490_SNP [dm3] 2L_6956490_SNP [dm6]	G	T	1.222e^-4	0.932	UPSTREAM CG3430 & 1 other INTRON CG13775	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	17220499	2L_17220499_SNP [dm3] 2L_17220499_SNP [dm6]	C	T	1.227e^-4	0.932	INTRON beat-IIIc
2R	13738339	2R_13738339_SNP [dm3] 2R_17850834_SNP [dm6]	T	A	1.229e^-4	0.932	UPSTREAM olf186-F INTRON olf186-F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	1788059	2L_1788059_SNP [dm3] 2L_1788059_SNP [dm6]	T	C	1.231e^-4	0.932	INTERGENIC
2R	7656397	2R_7656397_SNP [dm3] 2R_11768892_SNP [dm6]	T	G	1.243e^-4	0.932	INTRON ths & 1 other	TF binding site mE1_TFBS_cad
2R	12633092	2R_12633092_SNP [dm3] 2R_16745587_SNP [dm6]	T	C	1.252e^-4	0.932	UTR_3_PRIME CG15617 UPSTREAM Sfp53D	TF binding site mE1_TFBS_cad
3L	5252564	3L_5252564_DEL [dm3] 3L_5259464_DEL [dm6]	AA	A	1.254e^-4	0.932	INTRON shep
2L	11974619	2L_11974619_SNP [dm3] 2L_11974619_SNP [dm6]	T	A	1.260e^-4	0.932	INTERGENIC
X	3421765	X_3421765_SNP [dm3] X_3527732_SNP [dm6]	C	A	1.268e^-4	0.932	INTRON CG32791
2R	16799894	2R_16799894_SNP [dm3] 2R_20912389_SNP [dm6]	G	A	1.281e^-4	0.932	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	12165506	X_12165506_SNP [dm3] X_12271473_SNP [dm6]	T	C	1.283e^-4	0.932	INTRON Ten-a
2L	11459447	2L_11459447_SNP [dm3] 2L_11459447_SNP [dm6]	C	A	1.291e^-4	0.932	INTERGENIC
2R	2347481	2R_2347481_SNP [dm3] 2R_6459976_SNP [dm6]	C	A	1.291e^-4	0.932	INTERGENIC
3R	4997443	3R_4997443_SNP [dm3] 3R_9171721_SNP [dm6]	T	C	1.293e^-4	0.932	INTRON pum
2L	7210775	2L_7210775_SNP [dm3] 2L_7210775_SNP [dm6]	G	A	1.295e^-4	0.932	INTRON CG13784
X	16080645	X_16080645_SNP [dm3] X_16186612_SNP [dm6]	G	A	1.299e^-4	0.932	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	7634917	2R_7634917_SNP [dm3] 2R_11747412_SNP [dm6]	G	A	1.303e^-4	0.932	INTERGENIC
2L	17039431	2L_17039431_SNP [dm3] 2L_17039431_SNP [dm6]	C	A	1.304e^-4	0.932	INTERGENIC
2R	16799914	2R_16799914_SNP [dm3] 2R_20912409_SNP [dm6]	A	C	1.309e^-4	0.932	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	4662628	3L_4662628_SNP [dm3] 3L_4662628_SNP [dm6]	A	G	1.314e^-4	0.932	INTRON axo
X	6119463	X_6119463_INS [dm3] X_6225430_INS [dm6]	T	TA	1.317e^-4	0.932	UPSTREAM sqh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D
X	13921606	X_13921606_SNP [dm3] X_14027573_SNP [dm6]	C	T	1.324e^-4	0.932	INTERGENIC
3R	17657422	3R_17657422_SNP [dm3] 3R_21831700_SNP [dm6]	A	G	1.328e^-4	0.932	UPSTREAM Gr93a INTERGENIC
2R	18995531	2R_18995531_SNP [dm3] 2R_23108008_SNP [dm6]	A	G	1.338e^-4	0.932	INTERGENIC
3R	24495250	3R_24495250_SNP [dm3] 3R_28669528_SNP [dm6]	G	A	1.341e^-4	0.932	NON_SYNONYMOUS_CODING CG33346
2R	6397123	2R_6397123_DEL [dm3] 2R_10509618_DEL [dm6]	ATA	GC	1.358e^-4	0.932	DOWNSTREAM lola INTRON lola
3L	4542479	3L_4542479_SNP [dm3] 3L_4542479_SNP [dm6]	A	G	1.361e^-4	0.932	UTR_5_PRIME CG11357 INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	3600741	3R_3600741_SNP [dm3] 3R_7775019_SNP [dm6]	G	A	1.366e^-4	0.932	INTERGENIC	TF binding site mE1_TFBS_inv
2R	18234104	2R_18234104_SNP [dm3] 2R_22346599_SNP [dm6]	C	T	1.369e^-4	0.932	INTRON Liprin-gamma
X	15676894	X_15676894_SNP [dm3] X_15782861_SNP [dm6]	T	C	1.379e^-4	0.932	SYNONYMOUS_CODING Efhc1.1	TF binding site mE1_TFBS_sens
2L	17163289	2L_17163289_SNP [dm3] 2L_17163289_SNP [dm6]	T	A	1.385e^-4	0.932	INTRON beat-IIIa & 1 other
2L	17229345	2L_17229345_SNP [dm3] 2L_17229345_SNP [dm6]	C	G	1.390e^-4	0.932	INTRON beat-IIIc
3R	16491034	3R_16491034_SNP [dm3] 3R_20665312_SNP [dm6]	G	A	1.397e^-4	0.932	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15676942	X_15676942_SNP [dm3] X_15782909_SNP [dm6]	C	T	1.399e^-4	0.932	SYNONYMOUS_CODING Efhc1.1	TF binding site mE1_TFBS_sens
2L	9407170	2L_9407170_SNP [dm3] 2L_9407170_SNP [dm6]	T	A	1.401e^-4	0.932	INTRON Shawl
3R	24491296	3R_24491296_SNP [dm3] 3R_28665574_SNP [dm6]	T	C	1.406e^-4	0.932	INTERGENIC
2L	17773438	2L_17773438_SNP [dm3] 2L_17773438_SNP [dm6]	G	A	1.410e^-4	0.932	INTRON CadN
2R	10963852	2R_10963852_SNP [dm3] 2R_15076347_SNP [dm6]	A	C	1.425e^-4	0.932	INTERGENIC
3R	18454595	3R_18454595_SNP [dm3] 3R_22628873_SNP [dm6]	C	T	1.426e^-4	0.932	UPSTREAM CR43474 INTRON loco EXON CR43475	regulatory region REDfly_CRMs
2R	8627747	2R_8627747_SNP [dm3] 2R_12740242_SNP [dm6]	A	G	1.438e^-4	0.932	INTRON CG42663
2R	15482116	2R_15482116_SNP [dm3] 2R_19594611_SNP [dm6]	A	G	1.453e^-4	0.932	INTRON sm & 1 other
2R	7649019	2R_7649019_SNP [dm3] 2R_11761514_SNP [dm6]	C	T	1.473e^-4	0.932	INTRON ths
2R	15423992	2R_15423992_SNP [dm3] 2R_19536487_SNP [dm6]	C	T	1.474e^-4	0.932	INTRON sm	TF binding site BDTNP1_TFBS_twi
2L	15415563	2L_15415563_SNP [dm3] 2L_15415563_SNP [dm6]	A	T	1.476e^-4	0.932	INTERGENIC
2L	3218378	2L_3218378_SNP [dm3] 2L_3218378_SNP [dm6]	C	T	1.482e^-4	0.932	INTERGENIC
3R	26482619	3R_26482619_SNP [dm3] 3R_30656897_SNP [dm6]	C	T	1.487e^-4	0.932	INTERGENIC
3L	4541866	3L_4541866_SNP [dm3] 3L_4541866_SNP [dm6]	C	T	1.497e^-4	0.932	UPSTREAM CG11357 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	17243662	2L_17243662_SNP [dm3] 2L_17243662_SNP [dm6]	T	C	1.499e^-4	0.932	INTRON beat-IIIc
3L	6692737	3L_6692737_SNP [dm3] 3L_6699637_SNP [dm6]	A	G	1.506e^-4	0.932	INTRON SP1173
2R	19239810	2R_19239810_SNP [dm3] 2R_23352287_SNP [dm6]	A	G	1.509e^-4	0.932	DOWNSTREAM CG34210 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	5252583	3L_5252583_SNP [dm3] 3L_5259483_SNP [dm6]	A	C	1.514e^-4	0.932	INTRON shep
3L	15100923	3L_15100923_SNP [dm3] 3L_15107823_SNP [dm6]	G	C	1.524e^-4	0.932	DOWNSTREAM CR43971 INTRON CTPsyn & 1 other	TF binding site BDTNP1_TFBS_dl
X	18401990	X_18401990_SNP [dm3] X_18507957_SNP [dm6]	T	G	1.524e^-4	0.932	NON_SYNONYMOUS_CODING Ggt-1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7030304	2L_7030304_SNP [dm3] 2L_7030304_SNP [dm6]	T	A	1.526e^-4	0.932	DOWNSTREAM Rab30 INTERGENIC
2L	4643809	2L_4643809_SNP [dm3] 2L_4643809_SNP [dm6]	T	C	1.529e^-4	0.932	NON_SYNONYMOUS_CODING CG15635 DOWNSTREAM BG642163
2L	6323655	2L_6323655_SNP [dm3] 2L_6323655_SNP [dm6]	A	C	1.534e^-4	0.932	UPSTREAM PDZ-GEF DOWNSTREAM Ddr INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	26216019	3R_26216019_SNP [dm3] 3R_30390297_SNP [dm6]	T	C	1.535e^-4	0.932	UTR_3_PRIME Fer2LCH	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	3971059	3L_3971059_INS [dm3] 3L_3971059_INS [dm6]	G	GTATGTATG	1.536e^-4	0.932	INTERGENIC
2R	17539234	2R_17539234_SNP [dm3] 2R_21651729_SNP [dm6]	G	A	1.539e^-4	0.932	SYNONYMOUS_CODING CG30284 INTRON CG10082
3L	7577831	3L_7577831_SNP [dm3] 3L_7584731_SNP [dm6]	T	C	1.550e^-4	0.932	INTRON CG14838
3R	26751131	3R_26751131_SNP [dm3] 3R_30925409_SNP [dm6]	C	T	1.558e^-4	0.932	INTRON Ptx1	TF binding site BDTNP1_TFBS_twi
3L	7428924	3L_7428924_SNP [dm3] 3L_7435824_SNP [dm6]	T	C	1.560e^-4	0.932	UPSTREAM Rac2 DOWNSTREAM CG14835 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
3L	22284284	3L_22284284_SNP [dm3] 3L_22291184_SNP [dm6]	T	G	1.571e^-4	0.932	INTRON Aats-ile
3R	24484534	3R_24484534_SNP [dm3] 3R_28658812_SNP [dm6]	G	T	1.574e^-4	0.932	INTERGENIC
2R	2569258	2R_2569258_SNP [dm3] 2R_6681753_SNP [dm6]	C	G	1.578e^-4	0.932	UPSTREAM CR44164 DOWNSTREAM CR44165 INTRON CG9422
2R	6536035	2R_6536035_SNP [dm3] 2R_10648530_SNP [dm6]	C	G	1.580e^-4	0.932	NON_SYNONYMOUS_CODING Elp2 UPSTREAM CG12934
2R	10344310	2R_10344310_SNP [dm3] 2R_14456805_SNP [dm6]	A	C	1.582e^-4	0.932	INTRON Oaz	TF binding site BDTNP1_TFBS_dl
3L	3191981	3L_3191981_SNP [dm3] 3L_3191981_SNP [dm6]	T	G	1.588e^-4	0.932	SYNONYMOUS_CODING CG14965 UPSTREAM Hsp83	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	26734349	3R_26734349_SNP [dm3] 3R_30908627_SNP [dm6]	C	A	1.588e^-4	0.932	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	19232492	X_19232492_SNP [dm3] X_19338459_SNP [dm6]	T	G	1.611e^-4	0.932	INTRON nAChRalpha7	TF binding site BDTNP1_TFBS_dl
3L	5230525	3L_5230525_SNP [dm3] 3L_5237425_SNP [dm6]	A	C	1.611e^-4	0.932	DOWNSTREAM CG4669 INTRON shep
2R	19198888	2R_19198888_SNP [dm3] 2R_23311365_SNP [dm6]	C	A	1.611e^-4	0.932	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	7113557	3R_7113557_SNP [dm3] 3R_11287835_SNP [dm6]	C	A	1.629e^-4	0.932	INTRON CR31386
3R	17743741	3R_17743741_SNP [dm3] 3R_21918019_SNP [dm6]	T	C	1.632e^-4	0.932	INTERGENIC
2R	12063981	2R_12063981_INS [dm3] 2R_16176476_INS [dm6]	T	TTT	1.634e^-4	0.932	INTRON Ptp52F
3R	22808482	3R_22808482_SNP [dm3] 3R_26982760_SNP [dm6]	T	C	1.636e^-4	0.932	INTRON CG14253
3L	17342134	3L_17342134_SNP [dm3] 3L_17349034_SNP [dm6]	C	T	1.642e^-4	0.932	INTRON Mip	TF binding site BDTNP1_TFBS_dl
3R	23394172	3R_23394172_SNP [dm3] 3R_27568450_SNP [dm6]	C	T	1.646e^-4	0.932	UTR_5_PRIME wdb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5378374	3L_5378374_SNP [dm3] 3L_5385274_SNP [dm6]	G	A	1.651e^-4	0.932	INTERGENIC
2L	9642568	2L_9642568_SNP [dm3] 2L_9642568_SNP [dm6]	A	C	1.655e^-4	0.932	SYNONYMOUS_CODING Apoltp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1790852	2L_1790852_SNP [dm3] 2L_1790852_SNP [dm6]	C	T	1.664e^-4	0.932	SYNONYMOUS_CODING Gr22c UPSTREAM Gr22d
3R	11013440	3R_11013440_SNP [dm3] 3R_15187718_SNP [dm6]	C	T	1.665e^-4	0.932	SYNONYMOUS_CODING Gyc88E
2R	10841794	2R_10841794_SNP [dm3] 2R_14954289_SNP [dm6]	G	A	1.668e^-4	0.932	INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	17709054	3R_17709054_SNP [dm3] 3R_21883332_SNP [dm6]	G	A	1.679e^-4	0.932	SYNONYMOUS_CODING CG31465 UTR_3_PRIME CG31465 DOWNSTREAM fit EXON CR45046	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11297359	3L_11297359_SNP [dm3] 3L_11304259_SNP [dm6]	T	C	1.682e^-4	0.932	INTERGENIC
3L	8454040	3L_8454040_SNP [dm3] 3L_8460940_SNP [dm6]	A	G	1.683e^-4	0.932	INTRON Gug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2280574	3L_2280574_SNP [dm3] 3L_2280574_SNP [dm6]	A	C	1.691e^-4	0.932	INTERGENIC
2R	7640839	2R_7640839_SNP [dm3] 2R_11753334_SNP [dm6]	A	T	1.693e^-4	0.932	INTERGENIC
2L	11063420	2L_11063420_SNP [dm3] 2L_11063420_SNP [dm6]	C	G	1.695e^-4	0.932	INTRON Samuel
X	19364870	X_19364870_SNP [dm3] X_19470837_SNP [dm6]	C	A	1.697e^-4	0.932	UTR_3_PRIME kek5 DOWNSTREAM kek5
3R	25506586	3R_25506586_SNP [dm3] 3R_29680864_SNP [dm6]	G	C	1.704e^-4	0.932	NON_SYNONYMOUS_CODING CG7582 DOWNSTREAM Cap-D2 INTRON CG7582	TF binding site mE1_TFBS_cad
3R	26751611	3R_26751611_SNP [dm3] 3R_30925889_SNP [dm6]	T	C	1.718e^-4	0.932	INTRON Ptx1	TF binding site BDTNP1_TFBS_twi
X	21960490	X_21960490_SNP [dm3] X_22558654_SNP [dm6]	T	C	1.728e^-4	0.932	INTERGENIC	transposable element FlyBase
X	21975321	X_21975321_SNP [dm3] X_22573485_SNP [dm6]	C	T	1.732e^-4	0.932	INTERGENIC	transposable element FlyBase
X	19355716	X_19355716_SNP [dm3] X_19461683_SNP [dm6]	T	A	1.732e^-4	0.932	INTRON kek5
3L	11884688	3L_11884688_SNP [dm3] 3L_11891588_SNP [dm6]	A	C	1.735e^-4	0.932	INTRON CG44837
3R	26315682	3R_26315682_SNP [dm3] 3R_30489960_SNP [dm6]	A	C	1.736e^-4	0.932	UPSTREAM PH4alphaSG2 DOWNSTREAM Jon99Fi INTERGENIC
2L	14031895	2L_14031895_SNP [dm3] 2L_14031895_SNP [dm6]	T	C	1.737e^-4	0.932	UPSTREAM CG18095 DOWNSTREAM CR45284 INTERGENIC
3R	24495255	3R_24495255_SNP [dm3] 3R_28669533_SNP [dm6]	G	A	1.749e^-4	0.932	SYNONYMOUS_CODING CG33346
3L	18679411	3L_18679411_SNP [dm3] 3L_18686311_SNP [dm6]	T	G	1.750e^-4	0.932	UTR_5_PRIME Cyp12c1
2L	6955534	2L_6955534_SNP [dm3] 2L_6955534_SNP [dm6]	G	A	1.751e^-4	0.932	NON_SYNONYMOUS_CODING CG13775 DOWNSTREAM SA	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1463302	3L_1463302_SNP [dm3] 3L_1463302_SNP [dm6]	A	G	1.763e^-4	0.932	UPSTREAM CR44842 & 1 other INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	11974678	2L_11974678_SNP [dm3] 2L_11974678_SNP [dm6]	A	G	1.770e^-4	0.932	INTERGENIC
2R	18700980	2R_18700980_SNP [dm3] 2R_22813475_SNP [dm6]	T	C	1.776e^-4	0.932	SYNONYMOUS_CODING stl	TF binding site mE1_TFBS_cad
3R	14547466	3R_14547466_SNP [dm3] 3R_18721744_SNP [dm6]	C	A	1.778e^-4	0.932	DOWNSTREAM CG34283 INTRON Cha
2R	9148234	2R_9148234_SNP [dm3] 2R_13260729_SNP [dm6]	C	T	1.780e^-4	0.932	SYNONYMOUS_CODING CG42319
2R	15423976	2R_15423976_SNP [dm3] 2R_19536471_SNP [dm6]	T	C	1.785e^-4	0.932	INTRON sm	TF binding site BDTNP1_TFBS_twi
3L	3987440	3L_3987440_SNP [dm3] 3L_3987440_SNP [dm6]	G	A	1.785e^-4	0.932	SYNONYMOUS_CODING scrt	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7655489	2R_7655489_SNP [dm3] 2R_11767984_SNP [dm6]	G	C	1.792e^-4	0.932	UPSTREAM CG13193 INTRON ths
X	21975127	X_21975127_SNP [dm3] X_22573291_SNP [dm6]	G	T	1.794e^-4	0.932	INTERGENIC
2R	17132638	2R_17132638_SNP [dm3] 2R_21245133_SNP [dm6]	C	T	1.799e^-4	0.932	INTRON ASPP	TF binding site BDTNP1_TFBS_prd
X	21960398	X_21960398_SNP [dm3] X_22558562_SNP [dm6]	A	G	1.800e^-4	0.932	INTERGENIC	transposable element FlyBase
3R	15650570	3R_15650570_SNP [dm3] 3R_19824848_SNP [dm6]	G	T	1.806e^-4	0.932	INTRON bnl
2L	14475336	2L_14475336_SNP [dm3] 2L_14475336_SNP [dm6]	A	G	1.817e^-4	0.932	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	19369938	X_19369938_SNP [dm3] X_19475905_SNP [dm6]	G	A	1.819e^-4	0.932	UTR_3_PRIME CG12200 INTRON CG32533
3L	18684473	3L_18684473_SNP [dm3] 3L_18691373_SNP [dm6]	G	A	1.819e^-4	0.932	INTERGENIC
2R	7655490	2R_7655490_SNP [dm3] 2R_11767985_SNP [dm6]	A	C	1.823e^-4	0.932	UPSTREAM CG13193 INTRON ths
3L	18671149	3L_18671149_SNP [dm3] 3L_18678049_SNP [dm6]	T	C	1.829e^-4	0.932	DOWNSTREAM GNBP1 INTERGENIC
3R	25162394	3R_25162394_SNP [dm3] 3R_29336672_SNP [dm6]	A	G	1.835e^-4	0.932	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	16098498	X_16098498_DEL [dm3] X_16204465_DEL [dm6]	AT	A	1.836e^-4	0.932	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3234462	2L_3234462_SNP [dm3] 2L_3234462_SNP [dm6]	C	T	1.838e^-4	0.932	INTERGENIC
3R	17743520	3R_17743520_DEL [dm3] 3R_21917798_DEL [dm6]	AAATATATATCCC...	A	1.851e^-4	0.932	INTERGENIC
3R	26099225	3R_26099225_SNP [dm3] 3R_30273503_SNP [dm6]	C	G	1.856e^-4	0.932	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	25359648	3R_25359648_SNP [dm3] 3R_29533926_SNP [dm6]	A	C	1.865e^-4	0.932	UPSTREAM CR43613 INTERGENIC
2L	7030240	2L_7030240_SNP [dm3] 2L_7030240_SNP [dm6]	T	A	1.868e^-4	0.932	DOWNSTREAM Rab30 INTERGENIC
X	2775244	X_2775244_DEL [dm3] X_2881211_DEL [dm6]	AT	A	1.868e^-4	0.932	INTRON kirre
3R	22812126	3R_22812126_SNP [dm3] 3R_26986404_SNP [dm6]	C	T	1.874e^-4	0.932	DOWNSTREAM CG14253 INTRON CG31075	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19508654	2R_19508654_SNP [dm3] 2R_23621131_SNP [dm6]	C	T	1.880e^-4	0.932	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	25896063	3R_25896063_SNP [dm3] 3R_30070341_SNP [dm6]	T	A	1.894e^-4	0.932	INTRON sima
2R	2067890	2R_2067890_SNP [dm3] 2R_6180385_SNP [dm6]	G	T	1.902e^-4	0.932	DOWNSTREAM CG11211 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	12173177	2L_12173177_DEL [dm3] 2L_12173177_DEL [dm6]	AGCAA	A	1.904e^-4	0.932	UPSTREAM CG6583 DOWNSTREAM CR43356 INTRON crok	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	14048350	2L_14048350_SNP [dm3] 2L_14048350_SNP [dm6]	G	C	1.914e^-4	0.932	SYNONYMOUS_CODING NimC4 INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	25286571	3R_25286571_SNP [dm3] 3R_29460849_SNP [dm6]	G	A	1.917e^-4	0.932	INTRON Ptp99A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	3934588	3L_3934588_SNP [dm3] 3L_3934588_SNP [dm6]	A	T	1.921e^-4	0.932	UPSTREAM Eip63F-1 & 1 other INTRON Eip63F-1
X	18951597	X_18951597_SNP [dm3] X_19057564_SNP [dm6]	C	T	1.922e^-4	0.932	INTRON CG14190
3R	26681482	3R_26681482_DEL [dm3] 3R_30855760_DEL [dm6]	ATGTCCCTTAA...	A	1.924e^-4	0.932	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_eve
3L	563844	3L_563844_SNP [dm3] 3L_563844_SNP [dm6]	C	T	1.924e^-4	0.932	INTRON hipk
2R	3762208	2R_3762208_SNP [dm3] 2R_7874703_SNP [dm6]	T	C	1.925e^-4	0.932	INTRON Dgk
2R	13509269	2R_13509269_SNP [dm3] 2R_17621764_SNP [dm6]	G	T	1.935e^-4	0.932	INTRON CG10936
X	15112937	X_15112937_SNP [dm3] X_15218904_SNP [dm6]	T	A	1.950e^-4	0.932	INTERGENIC
2R	15423963	2R_15423963_SNP [dm3] 2R_19536458_SNP [dm6]	C	T	1.950e^-4	0.932	INTRON sm	TF binding site BDTNP1_TFBS_twi
2R	7651553	2R_7651553_SNP [dm3] 2R_11764048_SNP [dm6]	G	A	1.952e^-4	0.932	INTRON ths
2L	17906941	2L_17906941_SNP [dm3] 2L_17906941_SNP [dm6]	C	G	1.952e^-4	0.932	INTERGENIC
2R	18995528	2R_18995528_SNP [dm3] 2R_23108005_SNP [dm6]	G	T	1.955e^-4	0.932	INTERGENIC
2R	19017557	2R_19017557_SNP [dm3] 2R_23130034_SNP [dm6]	G	A	1.960e^-4	0.932	SYNONYMOUS_CODING CG3215
3L	3864631	3L_3864631_SNP [dm3] 3L_3864631_SNP [dm6]	T	C	1.966e^-4	0.932	UPSTREAM CR45379 INTERGENIC
2L	4808907	2L_4808907_SNP [dm3] 2L_4808907_SNP [dm6]	G	C	1.968e^-4	0.932	INTERGENIC
X	21958437	X_21958437_SNP [dm3] X_22556601_SNP [dm6]	C	T	1.971e^-4	0.932	INTERGENIC
2L	16798099	2L_16798099_SNP [dm3] 2L_16798099_SNP [dm6]	C	G	1.971e^-4	0.932	SYNONYMOUS_CODING Ugt36Bb UPSTREAM Ugt36Bc
2L	6178113	2L_6178113_SNP [dm3] 2L_6178113_SNP [dm6]	A	G	1.973e^-4	0.932	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	11396916	3R_11396916_SNP [dm3] 3R_15571194_SNP [dm6]	G	A	1.980e^-4	0.932	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7655043	2R_7655043_SNP [dm3] 2R_11767538_SNP [dm6]	A	T	1.997e^-4	0.932	UPSTREAM CG13193 INTRON ths
2R	15754520	2R_15754520_DEL [dm3] 2R_19867015_DEL [dm6]	AAAATA	A	2.000e^-4	0.932	INTRON Obp56i
X	17007310	X_17007310_SNP [dm3] X_17113277_SNP [dm6]	T	C	2.007e^-4	0.932	INTRON CG5004
2R	18932241	2R_18932241_SNP [dm3] 2R_23044718_SNP [dm6]	T	C	2.016e^-4	0.932	INTRON twi	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	5443162	2L_5443162_SNP [dm3] 2L_5443162_SNP [dm6]	G	T	2.018e^-4	0.932	INTERGENIC
2L	17592696	2L_17592696_SNP [dm3] 2L_17592696_SNP [dm6]	C	A	2.023e^-4	0.932	UPSTREAM Sytalpha & 1 other INTRON Sytalpha
2L	4807895	2L_4807895_SNP [dm3] 2L_4807895_SNP [dm6]	T	C	2.026e^-4	0.932	INTERGENIC
2L	17289395	2L_17289395_SNP [dm3] 2L_17289395_SNP [dm6]	G	T	2.035e^-4	0.932	INTERGENIC
3L	1132213	3L_1132213_SNP [dm3] 3L_1132213_SNP [dm6]	T	C	2.043e^-4	0.932	INTERGENIC	regulatory region REDfly_CRMs
3R	22810925	3R_22810925_SNP [dm3] 3R_26985203_SNP [dm6]	T	G	2.047e^-4	0.932	SYNONYMOUS_CODING CG14253 DOWNSTREAM CG31075	TF binding site mE1_TFBS_inv
2L	13270405	2L_13270405_SNP [dm3] 2L_13270405_SNP [dm6]	C	T	2.051e^-4	0.932	INTRON CG44085
3R	15569324	3R_15569324_SNP [dm3] 3R_19743602_SNP [dm6]	G	A	2.059e^-4	0.932	DOWNSTREAM CR43488 INTRON GluClalpha
X	19369928	X_19369928_SNP [dm3] X_19475895_SNP [dm6]	C	G	2.061e^-4	0.932	UTR_3_PRIME CG12200 INTRON CG32533
2R	7679832	2R_7679832_SNP [dm3] 2R_11792327_SNP [dm6]	C	T	2.064e^-4	0.932	INTRON ths	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	20020367	2R_20020367_SNP [dm3] 2R_24132844_SNP [dm6]	G	C	2.064e^-4	0.932	INTRON tamo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	2085618	X_2085618_SNP [dm3] X_2191585_SNP [dm6]	C	T	2.067e^-4	0.932	DOWNSTREAM CG14053 INTRON Mct1
3R	2155472	3R_2155472_SNP [dm3] 3R_6329750_SNP [dm6]	G	A	2.070e^-4	0.932	UPSTREAM Osi18 INTERGENIC
3R	19234972	3R_19234972_SNP [dm3] 3R_23409250_SNP [dm6]	T	G	2.070e^-4	0.932	UTR_3_PRIME CG4374
2R	8169071	2R_8169071_SNP [dm3] 2R_12281566_SNP [dm6]	T	C	2.072e^-4	0.932	INTRON CG42700
3L	12003311	3L_12003311_SNP [dm3] 3L_12010211_SNP [dm6]	G	T	2.076e^-4	0.932	SYNONYMOUS_CODING rols	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22803990	3R_22803990_SNP [dm3] 3R_26978268_SNP [dm6]	T	A	2.090e^-4	0.932	UPSTREAM CG14253 DOWNSTREAM CG5521 INTERGENIC
2L	14262513	2L_14262513_SNP [dm3] 2L_14262513_SNP [dm6]	C	G	2.098e^-4	0.932	UPSTREAM wb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3L	5232300	3L_5232300_SNP [dm3] 3L_5239200_SNP [dm6]	A	T	2.100e^-4	0.932	INTRON shep
2R	11556673	2R_11556673_SNP [dm3] 2R_15669168_SNP [dm6]	G	A	2.102e^-4	0.932	INTRON fus	TF binding site mE1_TFBS_inv
X	21960323	X_21960323_SNP [dm3] X_22558487_SNP [dm6]	T	G	2.106e^-4	0.932	INTERGENIC	transposable element FlyBase
3L	3866320	3L_3866320_SNP [dm3] 3L_3866320_SNP [dm6]	T	G	2.108e^-4	0.932	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	21951685	X_21951685_SNP [dm3] X_22549849_SNP [dm6]	C	T	2.114e^-4	0.932	INTERGENIC
2L	7635424	2L_7635424_SNP [dm3] 2L_7635424_SNP [dm6]	A	T	2.116e^-4	0.932	UPSTREAM CR44799 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
3L	6447555	3L_6447555_SNP [dm3] 3L_6454455_SNP [dm6]	G	C	2.120e^-4	0.932	INTRON CG42747
3R	22785637	3R_22785637_SNP [dm3] 3R_26959915_SNP [dm6]	C	T	2.123e^-4	0.932	INTERGENIC
2L	15844494	2L_15844494_SNP [dm3] 2L_15844494_SNP [dm6]	G	C	2.126e^-4	0.932	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	15102152	3L_15102152_DEL [dm3] 3L_15109052_DEL [dm6]	ATATAAA	A	2.132e^-4	0.932	UPSTREAM CR43971 INTRON CTPsyn & 1 other	TF binding site BDTNP1_TFBS_dl
3R	25170129	3R_25170129_SNP [dm3] 3R_29344407_SNP [dm6]	T	A	2.139e^-4	0.932	INTERGENIC
2L	14046892	2L_14046892_SNP [dm3] 2L_14046892_SNP [dm6]	A	C	2.150e^-4	0.932	UPSTREAM NimC4 INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	19372101	2R_19372101_SNP [dm3] 2R_23484578_SNP [dm6]	G	T	2.156e^-4	0.932	INTRON CG43795
2L	4750047	2L_4750047_SNP [dm3] 2L_4750047_SNP [dm6]	T	C	2.171e^-4	0.932	INTRON CG15630
2L	6372903	2L_6372903_SNP [dm3] 2L_6372903_SNP [dm6]	C	A	2.183e^-4	0.932	UPSTREAM slam INTRON slam	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2L	17261062	2L_17261062_SNP [dm3] 2L_17261062_SNP [dm6]	A	G	2.184e^-4	0.932	UPSTREAM beat-IIIc INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad
3L	12353724	3L_12353724_SNP [dm3] 3L_12360624_SNP [dm6]	A	T	2.187e^-4	0.932	INTERGENIC
2R	15857590	2R_15857590_SNP [dm3] 2R_19970085_SNP [dm6]	G	A	2.193e^-4	0.932	INTERGENIC
2L	5443159	2L_5443159_SNP [dm3] 2L_5443159_SNP [dm6]	A	T	2.196e^-4	0.932	INTERGENIC
3L	12357229	3L_12357229_SNP [dm3] 3L_12364129_SNP [dm6]	G	A	2.213e^-4	0.932	INTERGENIC
3R	25895984	3R_25895984_SNP [dm3] 3R_30070262_SNP [dm6]	T	A	2.217e^-4	0.932	INTRON sima
2R	7643376	2R_7643376_SNP [dm3] 2R_11755871_SNP [dm6]	A	G	2.237e^-4	0.932	UPSTREAM ths INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3R	23870791	3R_23870791_SNP [dm3] 3R_28045069_SNP [dm6]	G	A	2.241e^-4	0.932	INTRON CG34362
2R	16799722	2R_16799722_SNP [dm3] 2R_20912217_SNP [dm6]	C	G	2.244e^-4	0.932	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	10199112	3R_10199112_SNP [dm3] 3R_14373390_SNP [dm6]	A	G	2.254e^-4	0.932	UPSTREAM NK7.1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	24506910	3R_24506910_SNP [dm3] 3R_28681188_SNP [dm6]	C	G	2.258e^-4	0.932	UPSTREAM CG9990 INTRON CG9990
3R	22788424	3R_22788424_SNP [dm3] 3R_26962702_SNP [dm6]	T	A	2.262e^-4	0.932	UTR_3_PRIME Tsp97E INTRON Tsp97E
2R	6535853	2R_6535853_SNP [dm3] 2R_10648348_SNP [dm6]	C	A	2.270e^-4	0.932	SYNONYMOUS_CODING Elp2 UPSTREAM CG12934
X	21959895	X_21959895_SNP [dm3] X_22558059_SNP [dm6]	A	G	2.273e^-4	0.932	INTERGENIC	transposable element FlyBase
2R	7640744	2R_7640744_SNP [dm3] 2R_11753239_SNP [dm6]	A	G	2.273e^-4	0.932	INTERGENIC
2L	1868928	2L_1868928_SNP [dm3] 2L_1868928_SNP [dm6]	A	C	2.279e^-4	0.932	UPSTREAM CG7295 INTRON CG31663
3L	2856542	3L_2856542_SNP [dm3] 3L_2856542_SNP [dm6]	G	A	2.284e^-4	0.932	INTRON CG43444
2L	667490	2L_667490_SNP [dm3] 2L_667490_SNP [dm6]	C	T	2.285e^-4	0.932	INTRON ds	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	902163	3L_902163_SNP [dm3] 3L_902163_SNP [dm6]	T	G	2.297e^-4	0.932	UPSTREAM CG13905 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13155514	X_13155514_SNP [dm3] X_13261481_SNP [dm6]	C	T	2.298e^-4	0.932	INTRON comt	TF binding site mE1_TFBS_HSA
2R	2354206	2R_2354206_DEL [dm3] 2R_6466701_DEL [dm6]	GT	G	2.307e^-4	0.932	INTERGENIC	transposable element FlyBase
3R	26310840	3R_26310840_SNP [dm3] 3R_30485118_SNP [dm6]	A	C	2.310e^-4	0.932	INTRON PH4alphaEFB
2R	7655551	2R_7655551_SNP [dm3] 2R_11768046_SNP [dm6]	T	C	2.310e^-4	0.932	UPSTREAM CG13193 INTRON ths
2L	16539626	2L_16539626_SNP [dm3] 2L_16539626_SNP [dm6]	G	T	2.311e^-4	0.932	INTERGENIC
3L	5966438	3L_5966438_SNP [dm3] 3L_5973338_SNP [dm6]	G	T	2.315e^-4	0.932	INTRON CG10479	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
X	10041442	X_10041442_DEL [dm3] X_10147409_DEL [dm6]	AA	A	2.317e^-4	0.932	INTRON CR44894 & 1 other
3R	27008737	3R_27008737_SNP [dm3] 3R_31183015_SNP [dm6]	C	T	2.319e^-4	0.932	SYNONYMOUS_CODING mesh
2L	5010979	2L_5010979_SNP [dm3] 2L_5010979_SNP [dm6]	T	C	2.329e^-4	0.932	UTR_5_PRIME CG3887 UPSTREAM CG3887 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_ttk
3R	24870527	3R_24870527_SNP [dm3] 3R_29044805_SNP [dm6]	C	T	2.336e^-4	0.932	SYNONYMOUS_CODING Pkc98E	TF binding site mE1_TFBS_chinmo
3L	5874957	3L_5874957_INS [dm3] 3L_5881857_INS [dm6]	CAACAA	GGGACTTGCATG...	2.337e^-4	0.932	UPSTREAM CG13287 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	7657854	2R_7657854_SNP [dm3] 2R_11770349_SNP [dm6]	A	G	2.339e^-4	0.932	DOWNSTREAM CG13193 INTRON ths
X	16457378	X_16457378_SNP [dm3] X_16563345_SNP [dm6]	G	A	2.341e^-4	0.932	UTR_3_PRIME CanA-14F DOWNSTREAM CanA-14F	TF binding site BDTNP1_TFBS_dl
2R	16138953	2R_16138953_SNP [dm3] 2R_20251448_SNP [dm6]	A	T	2.351e^-4	0.932	INTRON CG9864
2L	17317549	2L_17317549_SNP [dm3] 2L_17317549_SNP [dm6]	C	T	2.355e^-4	0.932	INTERGENIC
2L	6682441	2L_6682441_SNP [dm3] 2L_6682441_SNP [dm6]	C	A	2.356e^-4	0.932	INTRON Nhe3	TF binding site mE1_TFBS_inv
2R	16035125	2R_16035125_SNP [dm3] 2R_20147620_SNP [dm6]	C	T	2.389e^-4	0.932	DOWNSTREAM CG11041 INTERGENIC
X	16821035	X_16821035_SNP [dm3] X_16927002_SNP [dm6]	A	T	2.400e^-4	0.932	INTRON CG4928
3R	15124382	3R_15124382_SNP [dm3] 3R_19298660_SNP [dm6]	C	T	2.404e^-4	0.932	UPSTREAM CG44174 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	6744513	2R_6744513_SNP [dm3] 2R_10857008_SNP [dm6]	A	G	2.418e^-4	0.932	INTRON CG30015
3R	22802007	3R_22802007_SNP [dm3] 3R_26976285_SNP [dm6]	G	C	2.421e^-4	0.932	INTRON CG5521	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6810028	2L_6810028_SNP [dm3] 2L_6810028_SNP [dm6]	G	A	2.425e^-4	0.932	INTERGENIC
3L	5230606	3L_5230606_SNP [dm3] 3L_5237506_SNP [dm6]	C	T	2.438e^-4	0.932	DOWNSTREAM CG4669 INTRON shep
2R	1753584	2R_1753584_DEL [dm3] 2R_5866079_DEL [dm6]	GCTCGG	G	2.438e^-4	0.932	INTERGENIC
2R	15482125	2R_15482125_INS [dm3] 2R_19594620_INS [dm6]	A	AAATA	2.450e^-4	0.932	INTRON sm & 1 other
2R	16124963	2R_16124963_SNP [dm3] 2R_20237458_SNP [dm6]	A	G	2.457e^-4	0.932	INTRON CG11099
2R	5956242	2R_5956242_SNP [dm3] 2R_10068737_SNP [dm6]	T	C	2.458e^-4	0.932	UPSTREAM CG12920 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	7620161	2R_7620161_SNP [dm3] 2R_11732656_SNP [dm6]	C	T	2.458e^-4	0.932	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6694895	3L_6694895_SNP [dm3] 3L_6701795_SNP [dm6]	G	A	2.462e^-4	0.932	INTRON SP1173
X	21950854	X_21950854_SNP [dm3] X_22549018_SNP [dm6]	T	A	2.463e^-4	0.932	DOWNSTREAM CG17601 INTERGENIC
2L	9419462	2L_9419462_SNP [dm3] 2L_9419462_SNP [dm6]	C	A	2.465e^-4	0.932	INTRON Mco1
2R	15870977	2R_15870977_SNP [dm3] 2R_19983472_SNP [dm6]	T	C	2.466e^-4	0.932	SYNONYMOUS_CODING CG8654	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14259295	2L_14259295_SNP [dm3] 2L_14259295_SNP [dm6]	C	A	2.467e^-4	0.932	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	11403032	2R_11403032_INS [dm3] 2R_15515527_INS [dm6]	C	CTAAC	2.471e^-4	0.932	UTR_3_PRIME GalNAc-T1 DOWNSTREAM Khc-73
2R	7587492	2R_7587492_DEL [dm3] 2R_11699987_DEL [dm6]	ACA	A	2.476e^-4	0.932	DOWNSTREAM Ir48b EXON Ir48a
2L	6955724	2L_6955724_SNP [dm3] 2L_6955724_SNP [dm6]	G	A	2.480e^-4	0.932	SYNONYMOUS_CODING CG13775	TF binding site mE1_TFBS_sens
2L	9636170	2L_9636170_SNP [dm3] 2L_9636170_SNP [dm6]	C	T	2.486e^-4	0.932	INTRON Apoltp
2L	14048251	2L_14048251_SNP [dm3] 2L_14048251_SNP [dm6]	C	G	2.493e^-4	0.932	SYNONYMOUS_CODING NimC4 INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	7209326	2R_7209326_SNP [dm3] 2R_11321821_SNP [dm6]	T	C	2.496e^-4	0.932	UPSTREAM Or47b INTERGENIC	TF binding site mE1_TFBS_inv
2L	9612361	2L_9612361_SNP [dm3] 2L_9612361_SNP [dm6]	G	A	2.499e^-4	0.932	SYNONYMOUS_CODING gcm2 UPSTREAM Trx-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_zfh1
3L	1090584	3L_1090584_SNP [dm3] 3L_1090584_SNP [dm6]	C	A	2.500e^-4	0.932	INTRON bab1	regulatory region REDfly_CRMs
X	13957725	X_13957725_SNP [dm3] X_14063692_SNP [dm6]	T	C	2.510e^-4	0.932	INTERGENIC
2L	16124836	2L_16124836_SNP [dm3] 2L_16124836_SNP [dm6]	T	A	2.517e^-4	0.932	INTERGENIC
2L	8388949	2L_8388949_SNP [dm3] 2L_8388949_SNP [dm6]	C	A	2.517e^-4	0.932	SYNONYMOUS_CODING CG42819 UPSTREAM snRNA:U6atac:29B DOWNSTREAM CG13384 & 1 other
2L	1787036	2L_1787036_SNP [dm3] 2L_1787036_SNP [dm6]	G	T	2.519e^-4	0.932	INTERGENIC
3L	11378109	3L_11378109_SNP [dm3] 3L_11385009_SNP [dm6]	T	A	2.520e^-4	0.932	UPSTREAM CR42755 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2R	5445769	2R_5445769_SNP [dm3] 2R_9558264_SNP [dm6]	G	A	2.529e^-4	0.932	DOWNSTREAM CR45281 INTERGENIC
X	12514596	X_12514596_SNP [dm3] X_12620563_SNP [dm6]	A	T	2.529e^-4	0.932	INTRON CG11085
X	21975443	X_21975443_SNP [dm3] X_22573607_SNP [dm6]	T	C	2.539e^-4	0.932	INTERGENIC	transposable element FlyBase
3L	11435139	3L_11435139_SNP [dm3] 3L_11442039_SNP [dm6]	A	G	2.550e^-4	0.932	INTERGENIC
3R	17289360	3R_17289360_SNP [dm3] 3R_21463638_SNP [dm6]	A	T	2.551e^-4	0.932	INTERGENIC
2L	8327987	2L_8327987_INS [dm3] 2L_8327987_INS [dm6]	A	ATGTA	2.553e^-4	0.932	INTRON CG14275
3R	11154691	3R_11154691_SNP [dm3] 3R_15328969_SNP [dm6]	A	T	2.559e^-4	0.932	NON_SYNONYMOUS_CODING ea UTR_5_PRIME ea UPSTREAM CG6236	TF binding site mE1_TFBS_chinmo
2L	11974635	2L_11974635_SNP [dm3] 2L_11974635_SNP [dm6]	G	A	2.560e^-4	0.932	INTERGENIC
2L	5021566	2L_5021566_INS [dm3] 2L_5021566_INS [dm6]	T	TGTAT	2.563e^-4	0.932	INTRON vkg
2L	14048337	2L_14048337_SNP [dm3] 2L_14048337_SNP [dm6]	C	T	2.565e^-4	0.932	NON_SYNONYMOUS_CODING NimC4 INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	19965548	3L_19965548_SNP [dm3] 3L_19972448_SNP [dm6]	T	A	2.584e^-4	0.932	INTRON Ac76E	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	4928697	3R_4928697_SNP [dm3] 3R_9102975_SNP [dm6]	G	A	2.586e^-4	0.932	INTRON pum
3R	17743482	3R_17743482_SNP [dm3] 3R_21917760_SNP [dm6]	C	T	2.602e^-4	0.932	INTERGENIC
3R	13199864	3R_13199864_SNP [dm3] 3R_17374142_SNP [dm6]	A	G	2.609e^-4	0.932	DOWNSTREAM Brf INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	14442336	2R_14442336_SNP [dm3] 2R_18554831_SNP [dm6]	C	A	2.609e^-4	0.932	SYNONYMOUS_CODING GEFmeso UTR_3_PRIME GEFmeso	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25162404	3R_25162404_SNP [dm3] 3R_29336682_SNP [dm6]	T	A	2.617e^-4	0.932	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2774153	3L_2774153_SNP [dm3] 3L_2774153_SNP [dm6]	A	T	2.625e^-4	0.932	UPSTREAM Atg2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	896189	3L_896189_SNP [dm3] 3L_896189_SNP [dm6]	T	C	2.626e^-4	0.932	SYNONYMOUS_CODING CG34056 DOWNSTREAM CG32479
3R	17709051	3R_17709051_SNP [dm3] 3R_21883329_SNP [dm6]	A	C	2.630e^-4	0.932	NON_SYNONYMOUS_CODING CG31465 UTR_3_PRIME CG31465 DOWNSTREAM fit EXON CR45046	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3961530	2L_3961530_SNP [dm3] 2L_3961530_SNP [dm6]	A	T	2.639e^-4	0.932	INTRON fred
2L	671126	2L_671126_SNP [dm3] 2L_671126_SNP [dm6]	G	T	2.643e^-4	0.932	INTRON ds	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	21961450	X_21961450_SNP [dm3] X_22559614_SNP [dm6]	A	T	2.651e^-4	0.932	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA transposable element FlyBase
3R	17709057	3R_17709057_SNP [dm3] 3R_21883335_SNP [dm6]	G	C	2.654e^-4	0.932	SYNONYMOUS_CODING CG31465 UTR_3_PRIME CG31465 DOWNSTREAM fit EXON CR45046	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22813298	3R_22813298_SNP [dm3] 3R_26987576_SNP [dm6]	T	A	2.656e^-4	0.932	UTR_5_PRIME CG31075 INTRON CG31075
2L	17248888	2L_17248888_SNP [dm3] 2L_17248888_SNP [dm6]	G	A	2.663e^-4	0.932	INTRON beat-IIIc	TF binding site mE1_TFBS_HSA
3R	4448783	3R_4448783_SNP [dm3] 3R_8623061_SNP [dm6]	T	A	2.670e^-4	0.932	INTRON 5-HT2B	TF binding site mE1_TFBS_inv
3L	1822014	3L_1822014_SNP [dm3] 3L_1822014_SNP [dm6]	T	C	2.674e^-4	0.932	SYNONYMOUS_CODING GV1
3R	22803953	3R_22803953_SNP [dm3] 3R_26978231_SNP [dm6]	A	C	2.676e^-4	0.932	UPSTREAM CG14253 DOWNSTREAM CG5521 INTERGENIC
2L	7630710	2L_7630710_SNP [dm3] 2L_7630710_SNP [dm6]	C	T	2.677e^-4	0.932	INTERGENIC
2R	8014375	2R_8014375_SNP [dm3] 2R_12126870_SNP [dm6]	C	G	2.701e^-4	0.932	INTERGENIC
X	6119808	X_6119808_SNP [dm3] X_6225775_SNP [dm6]	T	C	2.706e^-4	0.932	UTR_5_PRIME CG14446 UPSTREAM CG14446 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
2L	6954930	2L_6954930_SNP [dm3] 2L_6954930_SNP [dm6]	C	T	2.711e^-4	0.932	SYNONYMOUS_CODING CG13775 DOWNSTREAM SA
2L	6954969	2L_6954969_SNP [dm3] 2L_6954969_SNP [dm6]	T	A	2.711e^-4	0.932	SYNONYMOUS_CODING CG13775 DOWNSTREAM SA
X	12424494	X_12424494_SNP [dm3] X_12530461_SNP [dm6]	A	C	2.713e^-4	0.932	INTRON CG43921
2R	7222741	2R_7222741_SNP [dm3] 2R_11335236_SNP [dm6]	G	C	2.722e^-4	0.932	SYNONYMOUS_CODING sha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7635410	2L_7635410_SNP [dm3] 2L_7635410_SNP [dm6]	G	A	2.723e^-4	0.932	UPSTREAM CR44799 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
2R	1765710	2R_1765710_SNP [dm3] 2R_5878205_SNP [dm6]	T	A	2.723e^-4	0.932	DOWNSTREAM CG44438 INTERGENIC
3R	14697756	3R_14697756_INS [dm3] 3R_18872034_INS [dm6]	A	ATT	2.732e^-4	0.932	INTERGENIC
X	11591320	X_11591320_SNP [dm3] X_11697287_SNP [dm6]	A	T	2.732e^-4	0.932	INTRON PhKgamma	TF binding site mE1_TFBS_sens
3R	17296605	3R_17296605_SNP [dm3] 3R_21470883_SNP [dm6]	A	T	2.734e^-4	0.932	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25856790	3R_25856790_SNP [dm3] 3R_30031068_SNP [dm6]	T	G	2.736e^-4	0.932	INTRON Axn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	7771020	X_7771020_SNP [dm3] X_7876987_SNP [dm6]	T	G	2.741e^-4	0.932	NON_SYNONYMOUS_CODING Ir7d DOWNSTREAM Ir7c
3L	15099481	3L_15099481_SNP [dm3] 3L_15106381_SNP [dm6]	T	G	2.745e^-4	0.932	INTRON CTPsyn & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	6744511	2R_6744511_SNP [dm3] 2R_10857006_SNP [dm6]	A	C	2.746e^-4	0.932	INTRON CG30015
2L	17307777	2L_17307777_SNP [dm3] 2L_17307777_SNP [dm6]	T	C	2.748e^-4	0.932	INTERGENIC
3R	11068810	3R_11068810_SNP [dm3] 3R_15243088_SNP [dm6]	T	C	2.749e^-4	0.932	UPSTREAM Hsc70-4 & 1 other INTRON Hsc70-4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	4536686	3L_4536686_SNP [dm3] 3L_4536686_SNP [dm6]	C	A	2.750e^-4	0.932	INTRON CG11353
2L	3230153	2L_3230153_SNP [dm3] 2L_3230153_SNP [dm6]	A	G	2.753e^-4	0.932	INTERGENIC
3R	23871576	3R_23871576_SNP [dm3] 3R_28045854_SNP [dm6]	T	G	2.754e^-4	0.932	INTRON CG34362
X	8237109	X_8237109_SNP [dm3] X_8343076_SNP [dm6]	C	G	2.762e^-4	0.932	INTRON nAChRalpha3
2L	17014719	2L_17014719_SNP [dm3] 2L_17014719_SNP [dm6]	T	C	2.763e^-4	0.932	UPSTREAM CG6304 INTERGENIC
3R	26267296	3R_26267296_SNP [dm3] 3R_30441574_SNP [dm6]	C	G	2.763e^-4	0.932	INTRON CG15537
3R	26054567	3R_26054567_SNP [dm3] 3R_30228845_SNP [dm6]	C	T	2.769e^-4	0.932	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2L	4644057	2L_4644057_SNP [dm3] 2L_4644057_SNP [dm6]	C	A	2.771e^-4	0.932	SYNONYMOUS_CODING CG15635
3R	14560130	3R_14560130_SNP [dm3] 3R_18734408_SNP [dm6]	A	G	2.774e^-4	0.932	SYNONYMOUS_CODING Mekk1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	634775	2L_634775_INS [dm3] 2L_634775_INS [dm6]	T	TTT	2.779e^-4	0.932	INTERGENIC
2L	7635414	2L_7635414_INS [dm3] 2L_7635414_INS [dm6]	T	TA	2.789e^-4	0.932	UPSTREAM CR44799 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
2R	2816899	2R_2816899_SNP [dm3] 2R_6929394_SNP [dm6]	C	A	2.794e^-4	0.932	INTRON mim	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	7630712	2L_7630712_SNP [dm3] 2L_7630712_SNP [dm6]	T	G	2.797e^-4	0.932	INTERGENIC
X	6119168	X_6119168_SNP [dm3] X_6225135_SNP [dm6]	C	G	2.802e^-4	0.932	UTR_5_PRIME sqh UPSTREAM sqh & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	20177400	3L_20177400_SNP [dm3] 3L_20184300_SNP [dm6]	T	C	2.808e^-4	0.932	INTRON CG42674	TF binding site mE1_TFBS_cad
2L	12479543	2L_12479543_INS [dm3] 2L_12479543_INS [dm6]	T	TT	2.810e^-4	0.932	INTRON bun	TF binding site BDTNP1_TFBS_twi
3L	20870238	3L_20870238_SNP [dm3] 3L_20877138_SNP [dm6]	A	G	2.811e^-4	0.932	INTRON CG32432
2R	17319296	2R_17319296_SNP [dm3] 2R_21431791_SNP [dm6]	A	G	2.815e^-4	0.932	INTRON Sdc
2L	10613024	2L_10613024_SNP [dm3] 2L_10613024_SNP [dm6]	C	G	2.816e^-4	0.932	INTRON Trim9
3L	8549247	3L_8549247_SNP [dm3] 3L_8556147_SNP [dm6]	T	A	2.825e^-4	0.932	INTRON rhea
2R	3830464	2R_3830464_SNP [dm3] 2R_7942959_SNP [dm6]	T	G	2.826e^-4	0.932	UPSTREAM CG34430 INTRON CG14764
2R	3218273	2R_3218273_SNP [dm3] 2R_7330768_SNP [dm6]	G	A	2.827e^-4	0.932	SYNONYMOUS_CODING Dscam1 INTRON CR45129	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10564912	2L_10564912_SNP [dm3] 2L_10564912_SNP [dm6]	G	A	2.830e^-4	0.932	INTRON Trim9
2L	16546959	2L_16546959_SNP [dm3] 2L_16546959_SNP [dm6]	G	T	2.832e^-4	0.932	INTRON CG42389
2L	16124838	2L_16124838_SNP [dm3] 2L_16124838_SNP [dm6]	C	T	2.834e^-4	0.932	INTERGENIC
3R	6402281	3R_6402281_SNP [dm3] 3R_10576559_SNP [dm6]	A	G	2.836e^-4	0.932	INTRON hth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15290688	X_15290688_SNP [dm3] X_15396655_SNP [dm6]	T	G	2.852e^-4	0.932	INTRON Cngl
2R	7628152	2R_7628152_SNP [dm3] 2R_11740647_SNP [dm6]	G	A	2.858e^-4	0.932	INTERGENIC
2R	17149527	2R_17149527_SNP [dm3] 2R_21262022_SNP [dm6]	G	T	2.861e^-4	0.932	INTRON Rgk3
2R	15754403	2R_15754403_SNP [dm3] 2R_19866898_SNP [dm6]	G	A	2.862e^-4	0.932	INTRON Obp56i
X	18822368	X_18822368_INS [dm3] X_18928335_INS [dm6]	G	GTTTCTCG	2.865e^-4	0.932	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	564982	3L_564982_SNP [dm3] 3L_564982_SNP [dm6]	A	C	2.887e^-4	0.932	INTRON hipk
3R	11928696	3R_11928696_SNP [dm3] 3R_16102974_SNP [dm6]	A	G	2.889e^-4	0.932	INTRON Akt1
2L	10607624	2L_10607624_SNP [dm3] 2L_10607624_SNP [dm6]	A	G	2.904e^-4	0.932	INTRON Trim9	TF binding site BDTNP1_TFBS_twi
2L	12866964	2L_12866964_SNP [dm3] 2L_12866964_SNP [dm6]	A	G	2.904e^-4	0.932	INTERGENIC
2R	16125342	2R_16125342_SNP [dm3] 2R_20237837_SNP [dm6]	G	T	2.914e^-4	0.932	SYNONYMOUS_CODING CG11099 DOWNSTREAM CG13869
2L	17889949	2L_17889949_SNP [dm3] 2L_17889949_SNP [dm6]	G	C	2.917e^-4	0.932	INTERGENIC
2L	1372157	2L_1372157_SNP [dm3] 2L_1372157_SNP [dm6]	C	T	2.919e^-4	0.932	INTERGENIC
3R	11978105	3R_11978105_SNP [dm3] 3R_16152383_SNP [dm6]	G	A	2.932e^-4	0.932	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	7295209	3R_7295209_SNP [dm3] 3R_11469487_SNP [dm6]	T	G	2.950e^-4	0.932	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	3112330	3L_3112330_SNP [dm3] 3L_3112330_SNP [dm6]	G	A	2.958e^-4	0.932	NON_SYNONYMOUS_CODING CG45067
3R	25895951	3R_25895951_SNP [dm3] 3R_30070229_SNP [dm6]	A	G	2.965e^-4	0.932	INTRON sima
3R	13375500	3R_13375500_SNP [dm3] 3R_17549778_SNP [dm6]	T	C	2.974e^-4	0.932	INTERGENIC
X	2085587	X_2085587_SNP [dm3] X_2191554_SNP [dm6]	T	C	2.986e^-4	0.932	DOWNSTREAM CG14053 INTRON Mct1
3L	5154363	3L_5154363_SNP [dm3] 3L_5161263_SNP [dm6]	C	T	2.987e^-4	0.932	UTR_3_PRIME shep
3R	19221473	3R_19221473_SNP [dm3] 3R_23395751_SNP [dm6]	C	A	2.989e^-4	0.932	INTERGENIC
X	8477229	X_8477229_SNP [dm3] X_8583196_SNP [dm6]	A	C	2.990e^-4	0.932	INTRON CG12065
3L	3936778	3L_3936778_SNP [dm3] 3L_3936778_SNP [dm6]	G	A	2.991e^-4	0.932	UTR_3_PRIME CG10866 DOWNSTREAM Eip63F-2	TF binding site mE1_TFBS_cad
2L	15751743	2L_15751743_SNP [dm3] 2L_15751743_SNP [dm6]	C	T	2.993e^-4	0.932	UPSTREAM l_2_35Di & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5793982	2R_5793982_SNP [dm3] 2R_9906477_SNP [dm6]	C	T	2.994e^-4	0.932	INTRON FMRFa
3R	24495240	3R_24495240_SNP [dm3] 3R_28669518_SNP [dm6]	T	C	2.997e^-4	0.932	SYNONYMOUS_CODING CG33346
2L	13359594	2L_13359594_SNP [dm3] 2L_13359594_SNP [dm6]	A	T	2.998e^-4	0.932	DOWNSTREAM CG9377 INTERGENIC
X	9691286	X_9691286_SNP [dm3] X_9797253_SNP [dm6]	C	T	2.998e^-4	0.932	INTRON CG32698
2R	19380789	2R_19380789_SNP [dm3] 2R_23493266_SNP [dm6]	T	C	2.999e^-4	0.932	INTERGENIC
2R	17148346	2R_17148346_SNP [dm3] 2R_21260841_SNP [dm6]	G	A	2.999e^-4	0.932	INTRON Rgk3
3R	13199876	3R_13199876_SNP [dm3] 3R_17374154_SNP [dm6]	A	T	3.001e^-4	0.932	DOWNSTREAM Brf INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	16527564	2L_16527564_SNP [dm3] 2L_16527564_SNP [dm6]	G	C	3.001e^-4	0.932	SYNONYMOUS_CODING CG5953 DOWNSTREAM mir-4943	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	4840785	X_4840785_SNP [dm3] X_4946752_SNP [dm6]	T	A	3.014e^-4	0.932	INTRON Ptp4E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	1995573	3L_1995573_SNP [dm3] 3L_1995573_SNP [dm6]	C	G	3.015e^-4	0.932	INTERGENIC
3R	13375501	3R_13375501_SNP [dm3] 3R_17549779_SNP [dm6]	A	G	3.019e^-4	0.932	INTERGENIC
2L	9611924	2L_9611924_SNP [dm3] 2L_9611924_SNP [dm6]	G	A	3.024e^-4	0.932	NON_SYNONYMOUS_CODING gcm2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	13851373	3R_13851373_SNP [dm3] 3R_18025651_SNP [dm6]	G	A	3.025e^-4	0.932	DOWNSTREAM CG7794 INTERGENIC	TF binding site mE1_TFBS_cad
2R	17792464	2R_17792464_SNP [dm3] 2R_21904959_SNP [dm6]	G	A	3.030e^-4	0.932	INTRON Fili
2L	15977413	2L_15977413_SNP [dm3] 2L_15977413_SNP [dm6]	A	G	3.030e^-4	0.932	INTERGENIC
2L	671091	2L_671091_SNP [dm3] 2L_671091_SNP [dm6]	C	T	3.032e^-4	0.932	INTRON ds	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	21994723	2L_21994723_SNP [dm3] 2L_21994723_SNP [dm6]	C	T	3.038e^-4	0.932	INTERGENIC
3R	24495252	3R_24495252_SNP [dm3] 3R_28669530_SNP [dm6]	C	T	3.041e^-4	0.932	SYNONYMOUS_CODING CG33346
3L	1995667	3L_1995667_SNP [dm3] 3L_1995667_SNP [dm6]	G	A	3.050e^-4	0.932	INTERGENIC
2R	6462557	2R_6462557_SNP [dm3] 2R_10575052_SNP [dm6]	A	T	3.050e^-4	0.932	INTRON psq	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	17341515	2L_17341515_SNP [dm3] 2L_17341515_SNP [dm6]	A	T	3.057e^-4	0.932	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14073392	3L_14073392_SNP [dm3] 3L_14080292_SNP [dm6]	G	A	3.058e^-4	0.932	SYNONYMOUS_CODING btl	TF binding site mE1_TFBS_sens
2R	11599409	2R_11599409_SNP [dm3] 2R_15711904_SNP [dm6]	G	A	3.076e^-4	0.932	NON_SYNONYMOUS_CODING CG30083
3R	23636843	3R_23636843_SNP [dm3] 3R_27811121_SNP [dm6]	T	G	3.079e^-4	0.932	INTRON CG34353
3R	19531337	3R_19531337_SNP [dm3] 3R_23705615_SNP [dm6]	C	G	3.081e^-4	0.932	NON_SYNONYMOUS_CODING CG31414 DOWNSTREAM CR44052	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	23671704	3R_23671704_SNP [dm3] 3R_27845982_SNP [dm6]	G	A	3.082e^-4	0.932	SYNONYMOUS_CODING Or98a DOWNSTREAM Or98P INTRON CG34353
2L	7635422	2L_7635422_SNP [dm3] 2L_7635422_SNP [dm6]	G	C	3.088e^-4	0.932	UPSTREAM CR44799 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
2L	16608691	2L_16608691_SNP [dm3] 2L_16608691_SNP [dm6]	G	A	3.126e^-4	0.932	NON_SYNONYMOUS_CODING CG4631 INTRON CG42389
3R	27000942	3R_27000942_SNP [dm3] 3R_31175220_SNP [dm6]	C	T	3.131e^-4	0.932	INTRON Gycbeta100B
2R	5971200	2R_5971200_SNP [dm3] 2R_10083695_SNP [dm6]	G	A	3.137e^-4	0.932	SYNONYMOUS_CODING egr
3R	20474441	3R_20474441_SNP [dm3] 3R_24648719_SNP [dm6]	A	C	3.141e^-4	0.932	SYNONYMOUS_CODING puf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	5956240	2R_5956240_INS [dm3] 2R_10068735_INS [dm6]	T	TA	3.143e^-4	0.932	UPSTREAM CG12920 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	5264854	3L_5264854_SNP [dm3] 3L_5271754_SNP [dm6]	T	G	3.145e^-4	0.932	UTR_5_PRIME shep INTRON shep	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	23502885	3R_23502885_SNP [dm3] 3R_27677163_SNP [dm6]	T	C	3.149e^-4	0.932	UPSTREAM CG5590 DOWNSTREAM unc80 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
3L	20868194	3L_20868194_SNP [dm3] 3L_20875094_SNP [dm6]	G	A	3.149e^-4	0.932	INTRON CG32432
3L	18687133	3L_18687133_DEL [dm3] 3L_18694033_DEL [dm6]	CGTTGGTTTGGATTTTTTGG...	C	3.155e^-4	0.932	UPSTREAM CG6893 & 1 other INTERGENIC
3L	17701649	3L_17701649_SNP [dm3] 3L_17708549_SNP [dm6]	A	G	3.157e^-4	0.932	INTRON Ccn
2L	5021559	2L_5021559_SNP [dm3] 2L_5021559_SNP [dm6]	C	G	3.166e^-4	0.932	INTRON vkg
3R	18454578	3R_18454578_SNP [dm3] 3R_22628856_SNP [dm6]	C	T	3.179e^-4	0.932	UPSTREAM CR43474 INTRON loco EXON CR43475	regulatory region REDfly_CRMs
2R	19318485	2R_19318485_SNP [dm3] 2R_23430962_SNP [dm6]	C	T	3.180e^-4	0.932	INTRON CG9815
3R	11290838	3R_11290838_SNP [dm3] 3R_15465116_SNP [dm6]	C	T	3.180e^-4	0.932	INTRON AdamTS-A
2L	14048329	2L_14048329_SNP [dm3] 2L_14048329_SNP [dm6]	A	T	3.181e^-4	0.932	SYNONYMOUS_CODING NimC4 INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	5974188	X_5974188_SNP [dm3] X_6080155_SNP [dm6]	A	T	3.183e^-4	0.932	INTRON CG4660	TF binding site BDTNP1_TFBS_dl
3R	22797199	3R_22797199_SNP [dm3] 3R_26971477_SNP [dm6]	C	A	3.184e^-4	0.932	SYNONYMOUS_CODING CG5521	TF binding site mE1_TFBS_cad
3R	14547574	3R_14547574_SNP [dm3] 3R_18721852_SNP [dm6]	T	A	3.191e^-4	0.932	DOWNSTREAM CG34283 INTRON Cha
X	16098342	X_16098342_SNP [dm3] X_16204309_SNP [dm6]	A	G	3.192e^-4	0.932	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3R	22359257	3R_22359257_SNP [dm3] 3R_26533535_SNP [dm6]	C	A	3.196e^-4	0.932	INTRON plum
3L	5874966	3L_5874966_SNP [dm3] 3L_5881866_SNP [dm6]	T	G	3.213e^-4	0.932	UPSTREAM CG13287 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	6334259	2L_6334259_SNP [dm3] 2L_6334259_SNP [dm6]	T	C	3.213e^-4	0.932	SYNONYMOUS_CODING Pez	TF binding site mE1_TFBS_cad
3L	8808017	3L_8808017_SNP [dm3] 3L_8814917_SNP [dm6]	T	C	3.226e^-4	0.932	INTERGENIC
3L	5224255	3L_5224255_DEL [dm3] 3L_5231155_DEL [dm6]	CTTA	G	3.228e^-4	0.932	INTRON shep
3L	15103560	3L_15103560_SNP [dm3] 3L_15110460_SNP [dm6]	C	T	3.231e^-4	0.932	SYNONYMOUS_CODING CG45071 INTRON CTPsyn
2R	19500753	2R_19500753_SNP [dm3] 2R_23613230_SNP [dm6]	A	T	3.240e^-4	0.932	INTRON CG17664 & 1 other	TF binding site mE1_TFBS_inv
3R	25894880	3R_25894880_SNP [dm3] 3R_30069158_SNP [dm6]	C	T	3.241e^-4	0.932	INTRON sima
2R	18923831	2R_18923831_SNP [dm3] 2R_23036308_SNP [dm6]	T	C	3.241e^-4	0.932	INTRON twi & 1 other	TF binding site mE1_TFBS_inv
3L	7818498	3L_7818498_SNP [dm3] 3L_7825398_SNP [dm6]	G	A	3.243e^-4	0.932	INTRON Pdp1
X	6119892	X_6119892_SNP [dm3] X_6225859_SNP [dm6]	T	C	3.257e^-4	0.932	UTR_5_PRIME CG14446 UPSTREAM CG14446 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
3L	1676796	3L_1676796_SNP [dm3] 3L_1676796_SNP [dm6]	C	T	3.259e^-4	0.932	INTRON CG7991
2L	14048328	2L_14048328_SNP [dm3] 2L_14048328_SNP [dm6]	T	C	3.264e^-4	0.932	NON_SYNONYMOUS_CODING NimC4 INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	4891695	3R_4891695_SNP [dm3] 3R_9065973_SNP [dm6]	T	C	3.264e^-4	0.932	SYNONYMOUS_CODING Ada UPSTREAM beag DOWNSTREAM pum	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19021550	2R_19021550_SNP [dm3] 2R_23134027_SNP [dm6]	G	A	3.272e^-4	0.932	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	16527609	2L_16527609_SNP [dm3] 2L_16527609_SNP [dm6]	T	G	3.274e^-4	0.932	SYNONYMOUS_CODING CG5953 DOWNSTREAM mir-4943	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10006006	2R_10006006_SNP [dm3] 2R_14118501_SNP [dm6]	G	A	3.277e^-4	0.932	INTRON Prosap
2R	7653669	2R_7653669_SNP [dm3] 2R_11766164_SNP [dm6]	G	A	3.278e^-4	0.932	INTRON ths
3L	16913726	3L_16913726_SNP [dm3] 3L_16920626_SNP [dm6]	G	A	3.283e^-4	0.932	INTRON Lmpt
3R	26729727	3R_26729727_SNP [dm3] 3R_30904005_SNP [dm6]	G	A	3.284e^-4	0.932	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2354681	2R_2354681_INS [dm3] 2R_6467176_INS [dm6]	T	TCCAT	3.290e^-4	0.932	INTERGENIC	transposable element FlyBase
3R	26039179	3R_26039179_SNP [dm3] 3R_30213457_SNP [dm6]	G	A	3.299e^-4	0.932	UTR_3_PRIME CecB DOWNSTREAM CecA2 & 1 other
2L	6955128	2L_6955128_SNP [dm3] 2L_6955128_SNP [dm6]	G	T	3.304e^-4	0.932	NON_SYNONYMOUS_CODING CG13775 DOWNSTREAM SA
X	10041423	X_10041423_SNP [dm3] X_10147390_SNP [dm6]	C	T	3.315e^-4	0.932	INTRON CR44894 & 1 other
2R	18938172	2R_18938172_SNP [dm3] 2R_23050649_SNP [dm6]	A	C	3.315e^-4	0.932	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18687109	3L_18687109_SNP [dm3] 3L_18694009_SNP [dm6]	C	T	3.316e^-4	0.932	UPSTREAM CG6893 & 1 other INTERGENIC
3R	26310805	3R_26310805_SNP [dm3] 3R_30485083_SNP [dm6]	C	T	3.317e^-4	0.932	INTRON PH4alphaEFB
3R	22812900	3R_22812900_SNP [dm3] 3R_26987178_SNP [dm6]	G	A	3.318e^-4	0.932	INTRON CG31075	TF binding site mE1_TFBS_cad
X	21975311	X_21975311_SNP [dm3] X_22573475_SNP [dm6]	T	A	3.321e^-4	0.932	INTERGENIC	transposable element FlyBase
X	3792445	X_3792445_SNP [dm3] X_3898412_SNP [dm6]	T	C	3.324e^-4	0.932	INTRON CG42541
2L	5443163	2L_5443163_SNP [dm3] 2L_5443163_SNP [dm6]	A	T	3.334e^-4	0.932	INTERGENIC
2L	14046925	2L_14046925_SNP [dm3] 2L_14046925_SNP [dm6]	T	G	3.335e^-4	0.932	UPSTREAM NimC4 INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	5813612	2L_5813612_SNP [dm3] 2L_5813612_SNP [dm6]	C	A	3.339e^-4	0.932	INTERGENIC
2L	6305123	2L_6305123_SNP [dm3] 2L_6305123_SNP [dm6]	T	C	3.342e^-4	0.932	INTRON Ddr
3R	26333819	3R_26333819_SNP [dm3] 3R_30508097_SNP [dm6]	C	G	3.343e^-4	0.932	NON_SYNONYMOUS_CODING CG34041 DOWNSTREAM CG15539
X	21975269	X_21975269_SNP [dm3] X_22573433_SNP [dm6]	A	C	3.344e^-4	0.932	INTERGENIC
3R	26337038	3R_26337038_SNP [dm3] 3R_30511316_SNP [dm6]	T	G	3.346e^-4	0.932	INTRON PH4alphaNE2
2R	19508732	2R_19508732_SNP [dm3] 2R_23621209_SNP [dm6]	T	A	3.350e^-4	0.932	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	19016610	2R_19016610_SNP [dm3] 2R_23129087_SNP [dm6]	G	A	3.352e^-4	0.932	DOWNSTREAM CR44456 INTRON CG3215
3R	11254640	3R_11254640_INS [dm3] 3R_15428918_INS [dm6]	T	TTACAATT	3.355e^-4	0.932	INTRON CG6118
2L	6329819	2L_6329819_SNP [dm3] 2L_6329819_SNP [dm6]	G	A	3.358e^-4	0.932	INTRON PDZ-GEF	TF binding site mE1_TFBS_cad
X	14601719	X_14601719_SNP [dm3] X_14707686_SNP [dm6]	G	A	3.370e^-4	0.932	INTRON NetB
3L	15869773	3L_15869773_SNP [dm3] 3L_15876673_SNP [dm6]	C	A	3.374e^-4	0.932	UPSTREAM CR44051 INTRON pHCl
3R	13199890	3R_13199890_SNP [dm3] 3R_17374168_SNP [dm6]	A	C	3.378e^-4	0.932	DOWNSTREAM Brf INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	18663271	3L_18663271_SNP [dm3] 3L_18670171_SNP [dm6]	T	C	3.381e^-4	0.932	SYNONYMOUS_CODING Capr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	12003221	3L_12003221_SNP [dm3] 3L_12010121_SNP [dm6]	G	T	3.385e^-4	0.932	SYNONYMOUS_CODING rols	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4808949	2L_4808949_SNP [dm3] 2L_4808949_SNP [dm6]	T	A	3.388e^-4	0.932	INTERGENIC
3R	26890056	3R_26890056_SNP [dm3] 3R_31064334_SNP [dm6]	C	T	3.392e^-4	0.932	UPSTREAM Sox100B INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	5956303	2R_5956303_SNP [dm3] 2R_10068798_SNP [dm6]	G	A	3.406e^-4	0.934	UPSTREAM CG12920 & 1 other INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	4540938	3L_4540938_SNP [dm3] 3L_4540938_SNP [dm6]	C	A	3.420e^-4	0.934	NON_SYNONYMOUS_CODING CG32243	TF binding site BDTNP1_TFBS_dl
2R	7679850	2R_7679850_SNP [dm3] 2R_11792345_SNP [dm6]	G	A	3.420e^-4	0.934	INTRON ths	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14284852	3R_14284852_SNP [dm3] 3R_18459130_SNP [dm6]	A	T	3.421e^-4	0.934	INTRON fru	TF binding site mE1_TFBS_inv
3R	26734368	3R_26734368_SNP [dm3] 3R_30908646_SNP [dm6]	G	A	3.431e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	5339322	3R_5339322_SNP [dm3] 3R_9513600_SNP [dm6]	C	G	3.435e^-4	0.935	NON_SYNONYMOUS_CODING Rlb1 UPSTREAM Ras85D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3R	22804586	3R_22804586_SNP [dm3] 3R_26978864_SNP [dm6]	C	T	3.450e^-4	0.938	SYNONYMOUS_CODING CG14253 DOWNSTREAM CG5521
2R	2390842	2R_2390842_SNP [dm3] 2R_6503337_SNP [dm6]	C	T	3.461e^-4	0.94	NON_SYNONYMOUS_CODING jing	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	10041473	X_10041473_SNP [dm3] X_10147440_SNP [dm6]	A	G	3.483e^-4	0.942	INTRON CR44894 & 1 other
X	11677647	X_11677647_SNP [dm3] X_11783614_SNP [dm6]	T	C	3.494e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	9204028	3L_9204028_SNP [dm3] 3L_9210928_SNP [dm6]	T	C	3.497e^-4	0.942	UPSTREAM CG4476 INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
3R	22789362	3R_22789362_SNP [dm3] 3R_26963640_SNP [dm6]	A	G	3.512e^-4	0.942	INTRON Tsp97E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	4810321	2L_4810321_SNP [dm3] 2L_4810321_SNP [dm6]	A	T	3.523e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_Kr
3L	15101289	3L_15101289_SNP [dm3] 3L_15108189_SNP [dm6]	G	T	3.523e^-4	0.942	INTRON CTPsyn & 1 other EXON CR43971	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	3082469	X_3082469_SNP [dm3] X_3188436_SNP [dm6]	G	A	3.528e^-4	0.942	INTRON dnc	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14793435	2L_14793435_SNP [dm3] 2L_14793435_SNP [dm6]	G	A	3.540e^-4	0.942	INTERGENIC
3R	13814920	3R_13814920_SNP [dm3] 3R_17989198_SNP [dm6]	A	G	3.556e^-4	0.942	INTRON cpo
2R	18460001	2R_18460001_SNP [dm3] 2R_22572496_SNP [dm6]	T	C	3.559e^-4	0.942	INTRON dnr1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6690725	3L_6690725_SNP [dm3] 3L_6697625_SNP [dm6]	G	A	3.567e^-4	0.942	INTRON SP1173
3R	13375497	3R_13375497_SNP [dm3] 3R_17549775_SNP [dm6]	A	T	3.574e^-4	0.942	INTERGENIC
3L	22296765	3L_22296765_SNP [dm3] 3L_22303665_SNP [dm6]	G	T	3.578e^-4	0.942	INTRON Ten-m	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16018577	3R_16018577_SNP [dm3] 3R_20192855_SNP [dm6]	T	C	3.578e^-4	0.942	INTERGENIC
3L	2773229	3L_2773229_SNP [dm3] 3L_2773229_SNP [dm6]	T	C	3.582e^-4	0.942	NON_SYNONYMOUS_CODING CG12093 UPSTREAM CG9977	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2773230	3L_2773230_SNP [dm3] 3L_2773230_SNP [dm6]	G	T	3.582e^-4	0.942	NON_SYNONYMOUS_CODING CG12093 UPSTREAM CG9977	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13977089	2R_13977089_SNP [dm3] 2R_18089584_SNP [dm6]	A	T	3.595e^-4	0.942	INTRON CG34386
2L	4812085	2L_4812085_SNP [dm3] 2L_4812085_SNP [dm6]	C	T	3.597e^-4	0.942	UPSTREAM CR45297 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_zfh1
2R	13507374	2R_13507374_SNP [dm3] 2R_17619869_SNP [dm6]	T	C	3.599e^-4	0.942	INTRON CG10936
2R	13507378	2R_13507378_SNP [dm3] 2R_17619873_SNP [dm6]	C	T	3.599e^-4	0.942	INTRON CG10936
2R	16124997	2R_16124997_SNP [dm3] 2R_20237492_SNP [dm6]	T	G	3.599e^-4	0.942	INTRON CG11099
3L	20867085	3L_20867085_SNP [dm3] 3L_20873985_SNP [dm6]	A	G	3.600e^-4	0.942	INTRON CG32432
2L	6329797	2L_6329797_SNP [dm3] 2L_6329797_SNP [dm6]	T	C	3.604e^-4	0.942	INTRON PDZ-GEF	TF binding site mE1_TFBS_cad
3R	17743537	3R_17743537_SNP [dm3] 3R_21917815_SNP [dm6]	T	G	3.605e^-4	0.942	INTERGENIC
3L	3937822	3L_3937822_SNP [dm3] 3L_3937822_SNP [dm6]	C	G	3.612e^-4	0.942	UTR_5_PRIME CG10866 DOWNSTREAM CG12766	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	8237018	X_8237018_SNP [dm3] X_8342985_SNP [dm6]	A	G	3.620e^-4	0.942	INTRON nAChRalpha3
X	20231854	X_20231854_SNP [dm3] X_20360827_SNP [dm6]	A	C	3.632e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4814588	2L_4814588_SNP [dm3] 2L_4814588_SNP [dm6]	G	T	3.648e^-4	0.942	INTRON CG15629
2L	4342314	2L_4342314_SNP [dm3] 2L_4342314_SNP [dm6]	G	A	3.652e^-4	0.942	INTRON Atet	TF binding site mE1_TFBS_HSA
3R	6790523	3R_6790523_SNP [dm3] 3R_10964801_SNP [dm6]	G	C	3.655e^-4	0.942	INTERGENIC	transposable element FlyBase
2R	3488940	2R_3488940_SNP [dm3] 2R_7601435_SNP [dm6]	T	G	3.656e^-4	0.942	INTRON CG1358	TF binding site BDTNP1_TFBS_twi
2L	16610936	2L_16610936_INS [dm3] 2L_16610936_INS [dm6]	C	CAATAC	3.663e^-4	0.942	DOWNSTREAM CG4631 INTRON CG42389
2L	4500622	2L_4500622_SNP [dm3] 2L_4500622_SNP [dm6]	T	C	3.667e^-4	0.942	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	16933472	3L_16933472_SNP [dm3] 3L_16940372_SNP [dm6]	A	G	3.671e^-4	0.942	SYNONYMOUS_CODING Cpr73D	TF binding site mE1_TFBS_chinmo
2R	2353507	2R_2353507_SNP [dm3] 2R_6466002_SNP [dm6]	A	G	3.678e^-4	0.942	INTERGENIC	transposable element FlyBase
X	21958340	X_21958340_SNP [dm3] X_22556504_SNP [dm6]	A	G	3.706e^-4	0.942	INTERGENIC
2L	5727341	2L_5727341_INS [dm3] 2L_5727341_INS [dm6]	T	TACTCGCTTTTTAGCTACTT...	3.709e^-4	0.942	UTR_3_PRIME CG14006 INTRON CG11030	TF binding site mE1_TFBS_cad
2R	7660544	2R_7660544_SNP [dm3] 2R_11773039_SNP [dm6]	G	A	3.715e^-4	0.942	INTRON ths	TF binding site mE1_TFBS_sens
3R	22815752	3R_22815752_SNP [dm3] 3R_26990030_SNP [dm6]	A	G	3.726e^-4	0.942	UPSTREAM CG31076 INTERGENIC
X	13155507	X_13155507_DEL [dm3] X_13261474_DEL [dm6]	TA	T	3.728e^-4	0.942	INTRON comt	TF binding site mE1_TFBS_HSA
3L	331436	3L_331436_SNP [dm3] 3L_331436_SNP [dm6]	A	C	3.728e^-4	0.942	SYNONYMOUS_CODING mthl9 INTRON Ptpmeg	TF binding site mE1_TFBS_HSA
3L	6260674	3L_6260674_SNP [dm3] 3L_6267574_SNP [dm6]	A	G	3.733e^-4	0.942	INTERGENIC
3R	22824879	3R_22824879_SNP [dm3] 3R_26999157_SNP [dm6]	C	T	3.748e^-4	0.942	UPSTREAM CG31077 INTRON RYa-R
3R	26337073	3R_26337073_SNP [dm3] 3R_30511351_SNP [dm6]	T	A	3.751e^-4	0.942	SYNONYMOUS_CODING PH4alphaNE2 DOWNSTREAM CG31524
X	21979890	X_21979890_INS [dm3] X_22578054_INS [dm6]	T	TAGTAAAATTGTTGTTTTAT...	3.751e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15396937	2L_15396937_SNP [dm3] 2L_15396937_SNP [dm6]	A	G	3.758e^-4	0.942	DOWNSTREAM CR44859 INTERGENIC
2L	10370754	2L_10370754_SNP [dm3] 2L_10370754_SNP [dm6]	T	C	3.774e^-4	0.942	SYNONYMOUS_CODING rho-5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8549238	3L_8549238_SNP [dm3] 3L_8556138_SNP [dm6]	A	T	3.776e^-4	0.942	INTRON rhea
3R	22796647	3R_22796647_SNP [dm3] 3R_26970925_SNP [dm6]	A	G	3.787e^-4	0.942	SYNONYMOUS_CODING CG5521	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9192767	2L_9192767_SNP [dm3] 2L_9192767_SNP [dm6]	C	A	3.787e^-4	0.942	INTRON tai
3R	8551839	3R_8551839_SNP [dm3] 3R_12726117_SNP [dm6]	G	A	3.795e^-4	0.942	INTERGENIC
3L	1090270	3L_1090270_SNP [dm3] 3L_1090270_SNP [dm6]	A	G	3.798e^-4	0.942	INTRON bab1	regulatory region REDfly_CRMs
3L	3940590	3L_3940590_SNP [dm3] 3L_3940590_SNP [dm6]	C	T	3.799e^-4	0.942	UPSTREAM CG12766 DOWNSTREAM CG10863 EXON CR43916	TF binding site mE1_TFBS_kn
2L	11941945	2L_11941945_SNP [dm3] 2L_11941945_SNP [dm6]	C	T	3.802e^-4	0.942	INTERGENIC	regulatory region REDfly_CRMs
3R	17686189	3R_17686189_SNP [dm3] 3R_21860467_SNP [dm6]	G	A	3.806e^-4	0.942	DOWNSTREAM CR45644 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	7267500	2R_7267500_SNP [dm3] 2R_11379995_SNP [dm6]	G	C	3.807e^-4	0.942	UPSTREAM Tsp47F DOWNSTREAM Sod3 INTERGENIC
3R	22793966	3R_22793966_SNP [dm3] 3R_26968244_SNP [dm6]	G	C	3.807e^-4	0.942	INTRON CG5521
3L	4959313	3L_4959313_SNP [dm3] 3L_4959313_SNP [dm6]	C	A	3.811e^-4	0.942	INTRON Con	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16204509	2L_16204509_SNP [dm3] 2L_16204509_SNP [dm6]	A	C	3.817e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	14673593	3L_14673593_SNP [dm3] 3L_14680493_SNP [dm6]	T	C	3.831e^-4	0.942	SYNONYMOUS_CODING ome
2R	5630019	2R_5630019_SNP [dm3] 2R_9742514_SNP [dm6]	T	A	3.834e^-4	0.942	INTRON sqa
3R	16018673	3R_16018673_SNP [dm3] 3R_20192951_SNP [dm6]	G	A	3.846e^-4	0.942	INTERGENIC
3L	6447590	3L_6447590_SNP [dm3] 3L_6454490_SNP [dm6]	T	A	3.846e^-4	0.942	INTRON CG42747
2R	16242131	2R_16242131_SNP [dm3] 2R_20354626_SNP [dm6]	G	T	3.851e^-4	0.942	NON_SYNONYMOUS_CODING CG11192	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13199885	3R_13199885_SNP [dm3] 3R_17374163_SNP [dm6]	G	T	3.865e^-4	0.942	DOWNSTREAM Brf INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	2516762	X_2516762_SNP [dm3] X_2622729_SNP [dm6]	G	A	3.867e^-4	0.942	SYNONYMOUS_CODING brv3 DOWNSTREAM Seipin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	7110040	3R_7110040_SNP [dm3] 3R_11284318_SNP [dm6]	G	C	3.875e^-4	0.942	INTRON CR31386	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12399167	2L_12399167_SNP [dm3] 2L_12399167_SNP [dm6]	A	T	3.876e^-4	0.942	INTRON Pkd2
X	21975170	X_21975170_SNP [dm3] X_22573334_SNP [dm6]	T	C	3.879e^-4	0.942	INTERGENIC
2R	18926635	2R_18926635_SNP [dm3] 2R_23039112_SNP [dm6]	T	A	3.880e^-4	0.942	INTRON twi & 1 other
2R	2355258	2R_2355258_SNP [dm3] 2R_6467753_SNP [dm6]	A	C	3.883e^-4	0.942	INTERGENIC	transposable element FlyBase
X	21959839	X_21959839_SNP [dm3] X_22558003_SNP [dm6]	A	C	3.893e^-4	0.942	INTERGENIC	transposable element FlyBase
3R	17288535	3R_17288535_SNP [dm3] 3R_21462813_SNP [dm6]	G	A	3.894e^-4	0.942	INTERGENIC
3L	3014155	3L_3014155_SNP [dm3] 3L_3014155_SNP [dm6]	G	C	3.897e^-4	0.942	DOWNSTREAM CG32488 INTERGENIC
3R	24490876	3R_24490876_SNP [dm3] 3R_28665154_SNP [dm6]	C	T	3.899e^-4	0.942	INTERGENIC
2R	2350803	2R_2350803_SNP [dm3] 2R_6463298_SNP [dm6]	A	T	3.900e^-4	0.942	INTERGENIC	transposable element FlyBase
3L	7577846	3L_7577846_MNP [dm3] 3L_7584746_MNP [dm6]	GTA	CCC	3.902e^-4	0.942	SPLICE_SITE_REGION CG14838 INTRON CG14838
3R	11290835	3R_11290835_SNP [dm3] 3R_15465113_SNP [dm6]	G	A	3.904e^-4	0.942	INTRON AdamTS-A
3L	15093773	3L_15093773_SNP [dm3] 3L_15100673_SNP [dm6]	C	A	3.920e^-4	0.942	INTRON CTPsyn & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	7635335	2L_7635335_INS [dm3] 2L_7635335_INS [dm6]	A	AA	3.920e^-4	0.942	UPSTREAM CR44799 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
2R	9928153	2R_9928153_SNP [dm3] 2R_14040648_SNP [dm6]	G	A	3.925e^-4	0.942	NON_SYNONYMOUS_CODING mam INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2R	12669268	2R_12669268_SNP [dm3] 2R_16781763_SNP [dm6]	T	C	3.934e^-4	0.942	INTRON resilin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	5793979	2R_5793979_SNP [dm3] 2R_9906474_SNP [dm6]	T	C	3.945e^-4	0.942	INTRON FMRFa
3R	22794288	3R_22794288_SNP [dm3] 3R_26968566_SNP [dm6]	A	C	3.947e^-4	0.942	INTRON CG5521
2L	1371405	2L_1371405_SNP [dm3] 2L_1371405_SNP [dm6]	T	C	3.949e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_Med
2L	4817093	2L_4817093_SNP [dm3] 2L_4817093_SNP [dm6]	G	A	3.956e^-4	0.942	SYNONYMOUS_CODING CG3225 DOWNSTREAM mir-4910	TF binding site mE1_TFBS_sens
2R	2569253	2R_2569253_SNP [dm3] 2R_6681748_SNP [dm6]	C	T	3.968e^-4	0.942	UPSTREAM CR44164 DOWNSTREAM CR44165 INTRON CG9422
3R	22815772	3R_22815772_SNP [dm3] 3R_26990050_SNP [dm6]	G	A	3.971e^-4	0.942	UPSTREAM CG31076 INTERGENIC
2L	20602912	2L_20602912_SNP [dm3] 2L_20602912_SNP [dm6]	C	A	3.984e^-4	0.942	DOWNSTREAM CG31677 INTRON CR44909
X	21961503	X_21961503_SNP [dm3] X_22559667_SNP [dm6]	C	A	3.995e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA transposable element FlyBase
2R	19380956	2R_19380956_SNP [dm3] 2R_23493433_SNP [dm6]	G	A	3.997e^-4	0.942	INTERGENIC
2L	14260029	2L_14260029_SNP [dm3] 2L_14260029_SNP [dm6]	A	T	4.001e^-4	0.942	INTERGENIC
3L	6690724	3L_6690724_SNP [dm3] 3L_6697624_SNP [dm6]	A	C	4.002e^-4	0.942	INTRON SP1173
3L	3307788	3L_3307788_SNP [dm3] 3L_3307788_SNP [dm6]	C	T	4.004e^-4	0.942	UPSTREAM ZnT63C INTRON ZnT63C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24508368	3R_24508368_DEL [dm3] 3R_28682646_DEL [dm6]	TGAATGGCCA	T	4.005e^-4	0.942	INTRON CG9990	TF binding site BDTNP1_TFBS_z
X	13155516	X_13155516_DEL [dm3] X_13261483_DEL [dm6]	TAC	T	4.012e^-4	0.942	INTRON comt	TF binding site mE1_TFBS_HSA
3L	4669003	3L_4669003_DEL [dm3] 3L_4669003_DEL [dm6]	CATC	C	4.016e^-4	0.942	INTRON axo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	902162	3L_902162_SNP [dm3] 3L_902162_SNP [dm6]	G	T	4.024e^-4	0.942	UPSTREAM CG13905 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7630947	2R_7630947_DEL [dm3] 2R_11743442_DEL [dm6]	ATTAA	A	4.046e^-4	0.942	INTERGENIC
3R	27008791	3R_27008791_SNP [dm3] 3R_31183069_SNP [dm6]	A	G	4.048e^-4	0.942	SYNONYMOUS_CODING mesh
3R	13375458	3R_13375458_SNP [dm3] 3R_17549736_SNP [dm6]	G	A	4.050e^-4	0.942	INTERGENIC
3L	1924790	3L_1924790_SNP [dm3] 3L_1924790_SNP [dm6]	C	T	4.052e^-4	0.942	SYNONYMOUS_CODING Dbx UPSTREAM tRNA:CR32312	TF binding site mE1_TFBS_chinmo
3R	22804098	3R_22804098_SNP [dm3] 3R_26978376_SNP [dm6]	T	G	4.053e^-4	0.942	UPSTREAM CG14253 DOWNSTREAM CG5521 INTERGENIC
3R	22803926	3R_22803926_SNP [dm3] 3R_26978204_SNP [dm6]	A	G	4.057e^-4	0.942	UPSTREAM CG14253 DOWNSTREAM CG5521 INTERGENIC
2R	9154779	2R_9154779_SNP [dm3] 2R_13267274_SNP [dm6]	G	A	4.059e^-4	0.942	DOWNSTREAM CG42319 & 1 other INTERGENIC
3L	4778842	3L_4778842_SNP [dm3] 3L_4778842_SNP [dm6]	C	T	4.062e^-4	0.942	INTRON RhoGEF64C
2L	4808113	2L_4808113_SNP [dm3] 2L_4808113_SNP [dm6]	G	A	4.062e^-4	0.942	INTERGENIC
2L	11941946	2L_11941946_SNP [dm3] 2L_11941946_SNP [dm6]	C	A	4.070e^-4	0.942	INTERGENIC	regulatory region REDfly_CRMs
2R	10006009	2R_10006009_SNP [dm3] 2R_14118504_SNP [dm6]	T	C	4.070e^-4	0.942	INTRON Prosap
3R	16295931	3R_16295931_SNP [dm3] 3R_20470209_SNP [dm6]	C	T	4.078e^-4	0.942	INTRON Gfrl
X	9188961	X_9188961_SNP [dm3] X_9294928_SNP [dm6]	A	G	4.083e^-4	0.942	INTRON lz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5443134	2L_5443134_SNP [dm3] 2L_5443134_SNP [dm6]	T	C	4.093e^-4	0.942	INTERGENIC
2R	7643772	2R_7643772_SNP [dm3] 2R_11756267_SNP [dm6]	C	T	4.097e^-4	0.942	UPSTREAM ths INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	22784904	3R_22784904_SNP [dm3] 3R_26959182_SNP [dm6]	G	A	4.112e^-4	0.942	UPSTREAM CG6330 INTERGENIC
2L	16197750	2L_16197750_SNP [dm3] 2L_16197750_SNP [dm6]	A	C	4.115e^-4	0.942	INTERGENIC
3L	15202275	3L_15202275_SNP [dm3] 3L_15209175_SNP [dm6]	C	T	4.125e^-4	0.942	DOWNSTREAM CG6888 INTERGENIC
3R	14558545	3R_14558545_SNP [dm3] 3R_18732823_SNP [dm6]	G	C	4.130e^-4	0.942	NON_SYNONYMOUS_CODING CG14302 DOWNSTREAM Mekk1 & 1 other
2R	12349523	2R_12349523_SNP [dm3] 2R_16462018_SNP [dm6]	C	A	4.136e^-4	0.942	INTERGENIC
2R	16799762	2R_16799762_SNP [dm3] 2R_20912257_SNP [dm6]	A	T	4.139e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	21958485	X_21958485_SNP [dm3] X_22556649_SNP [dm6]	T	C	4.141e^-4	0.942	INTERGENIC
X	16132281	X_16132281_SNP [dm3] X_16238248_SNP [dm6]	A	T	4.148e^-4	0.942	INTERGENIC
2R	19302091	2R_19302091_SNP [dm3] 2R_23414568_SNP [dm6]	T	A	4.151e^-4	0.942	NON_SYNONYMOUS_CODING CG9812	TF binding site mE1_TFBS_chinmo
X	797867	X_797867_SNP [dm3] X_903834_SNP [dm6]	A	C	4.153e^-4	0.942	INTRON CG43867	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25033546	3R_25033546_SNP [dm3] 3R_29207824_SNP [dm6]	C	A	4.155e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_inv
2R	10580381	2R_10580381_SNP [dm3] 2R_14692876_SNP [dm6]	C	A	4.161e^-4	0.942	INTRON mspo
3R	26846025	3R_26846025_SNP [dm3] 3R_31020303_SNP [dm6]	G	A	4.165e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	5469738	2L_5469738_SNP [dm3] 2L_5469738_SNP [dm6]	C	G	4.167e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	7577835	3L_7577835_SNP [dm3] 3L_7584735_SNP [dm6]	A	T	4.173e^-4	0.942	INTRON CG14838
3L	16027203	3L_16027203_SNP [dm3] 3L_16034103_SNP [dm6]	G	A	4.175e^-4	0.942	SYNONYMOUS_CODING CG42716 UPSTREAM CG42717 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	14262526	2L_14262526_SNP [dm3] 2L_14262526_SNP [dm6]	G	T	4.180e^-4	0.942	UPSTREAM wb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
2R	17415241	2R_17415241_SNP [dm3] 2R_21527736_SNP [dm6]	A	G	4.181e^-4	0.942	INTRON Egfr
2L	9130371	2L_9130371_SNP [dm3] 2L_9130371_SNP [dm6]	G	A	4.181e^-4	0.942	INTRON CG32982	TF binding site BDTNP1_TFBS_twi
2L	17221816	2L_17221816_SNP [dm3] 2L_17221816_SNP [dm6]	T	C	4.186e^-4	0.942	INTRON beat-IIIc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11897087	3L_11897087_SNP [dm3] 3L_11903987_SNP [dm6]	T	G	4.198e^-4	0.942	INTRON CG44837
3L	12173728	3L_12173728_SNP [dm3] 3L_12180628_SNP [dm6]	T	C	4.199e^-4	0.942	INTRON CAH2
2L	7625000	2L_7625000_SNP [dm3] 2L_7625000_SNP [dm6]	G	T	4.206e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	26732474	3R_26732474_SNP [dm3] 3R_30906752_SNP [dm6]	C	T	4.215e^-4	0.942	INTERGENIC
2L	13359659	2L_13359659_SNP [dm3] 2L_13359659_SNP [dm6]	T	C	4.229e^-4	0.942	DOWNSTREAM CG9377 INTERGENIC
3R	26751051	3R_26751051_SNP [dm3] 3R_30925329_SNP [dm6]	T	A	4.234e^-4	0.942	INTRON Ptx1	TF binding site BDTNP1_TFBS_twi
3R	3767822	3R_3767822_SNP [dm3] 3R_7942100_SNP [dm6]	A	T	4.235e^-4	0.942	INTRON dsx
3R	26336208	3R_26336208_SNP [dm3] 3R_30510486_SNP [dm6]	G	A	4.237e^-4	0.942	SYNONYMOUS_CODING PH4alphaNE2 DOWNSTREAM CG34041
3R	17743479	3R_17743479_SNP [dm3] 3R_21917757_SNP [dm6]	T	A	4.245e^-4	0.942	INTERGENIC
2R	10456333	2R_10456333_SNP [dm3] 2R_14568828_SNP [dm6]	C	G	4.254e^-4	0.942	INTRON ttv	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	19311588	2R_19311588_SNP [dm3] 2R_23424065_SNP [dm6]	C	T	4.255e^-4	0.942	INTRON CG9815
2L	16545876	2L_16545876_SNP [dm3] 2L_16545876_SNP [dm6]	C	T	4.257e^-4	0.942	INTRON CG42389	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3R	18454586	3R_18454586_SNP [dm3] 3R_22628864_SNP [dm6]	A	T	4.261e^-4	0.942	UPSTREAM CR43474 INTRON loco EXON CR43475	regulatory region REDfly_CRMs
3L	5874790	3L_5874790_SNP [dm3] 3L_5881690_SNP [dm6]	T	A	4.289e^-4	0.942	UPSTREAM CG13287 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	2136885	2R_2136885_SNP [dm3] 2R_6249380_SNP [dm6]	T	G	4.294e^-4	0.942	INTRON Pld	TF binding site mE1_TFBS_cad
2L	4812066	2L_4812066_SNP [dm3] 2L_4812066_SNP [dm6]	G	C	4.297e^-4	0.942	UPSTREAM CR45297 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_zfh1
2R	15754491	2R_15754491_SNP [dm3] 2R_19866986_SNP [dm6]	A	G	4.300e^-4	0.942	INTRON Obp56i
2R	19198879	2R_19198879_SNP [dm3] 2R_23311356_SNP [dm6]	C	G	4.300e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	13360173	2L_13360173_SNP [dm3] 2L_13360173_SNP [dm6]	G	A	4.306e^-4	0.942	SYNONYMOUS_CODING CG9377	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	16100141	2L_16100141_SNP [dm3] 2L_16100141_SNP [dm6]	C	T	4.310e^-4	0.942	INTERGENIC
X	12654521	X_12654521_SNP [dm3] X_12760488_SNP [dm6]	C	T	4.312e^-4	0.942	UTR_5_PRIME ade5 DOWNSTREAM CG12717	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	16552570	2L_16552570_SNP [dm3] 2L_16552570_SNP [dm6]	T	C	4.314e^-4	0.942	INTRON CG42389
2R	16840085	2R_16840085_SNP [dm3] 2R_20952580_SNP [dm6]	A	G	4.315e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6530844	2L_6530844_SNP [dm3] 2L_6530844_SNP [dm6]	A	T	4.326e^-4	0.942	UPSTREAM eya INTRON eya	TF binding site BDTNP1_TFBS_twi
2R	2409463	2R_2409463_SNP [dm3] 2R_6521958_SNP [dm6]	G	C	4.330e^-4	0.942	INTRON jing
X	9691263	X_9691263_SNP [dm3] X_9797230_SNP [dm6]	T	C	4.333e^-4	0.942	INTRON CG32698
2R	17572443	2R_17572443_SNP [dm3] 2R_21684938_SNP [dm6]	G	A	4.336e^-4	0.942	UTR_3_PRIME CG30263 UPSTREAM CG10306	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
2L	4643674	2L_4643674_SNP [dm3] 2L_4643674_SNP [dm6]	A	C	4.340e^-4	0.942	NON_SYNONYMOUS_CODING CG15635 DOWNSTREAM BG642163	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16853737	2R_16853737_SNP [dm3] 2R_20966232_SNP [dm6]	G	T	4.341e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	22785638	3R_22785638_SNP [dm3] 3R_26959916_SNP [dm6]	G	C	4.347e^-4	0.942	INTERGENIC
3R	22785642	3R_22785642_SNP [dm3] 3R_26959920_SNP [dm6]	A	G	4.347e^-4	0.942	INTERGENIC
3L	21858186	3L_21858186_SNP [dm3] 3L_21865086_SNP [dm6]	C	A	4.350e^-4	0.942	INTRON mub
2R	7482190	2R_7482190_SNP [dm3] 2R_11594685_SNP [dm6]	C	T	4.364e^-4	0.942	INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
3R	13375503	3R_13375503_SNP [dm3] 3R_17549781_SNP [dm6]	C	T	4.364e^-4	0.942	INTERGENIC
X	3538864	X_3538864_SNP [dm3] X_3644831_SNP [dm6]	A	G	4.369e^-4	0.942	INTRON AstA-R1
3R	22771358	3R_22771358_SNP [dm3] 3R_26945636_SNP [dm6]	T	A	4.384e^-4	0.942	DOWNSTREAM sda INTRON CG14252	TF binding site BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
X	8753179	X_8753179_SNP [dm3] X_8859146_SNP [dm6]	G	A	4.389e^-4	0.942	INTRON CG12075
3L	10537494	3L_10537494_DEL [dm3] 3L_10544394_DEL [dm6]	GAG	G	4.390e^-4	0.942	INTRON A2bp1
3R	13097628	3R_13097628_SNP [dm3] 3R_17271906_SNP [dm6]	C	G	4.391e^-4	0.942	UPSTREAM CR44258 INTERGENIC
2R	14343044	2R_14343044_SNP [dm3] 2R_18455539_SNP [dm6]	G	A	4.411e^-4	0.942	INTERGENIC
X	2627069	X_2627069_SNP [dm3] X_2733036_SNP [dm6]	C	T	4.413e^-4	0.942	NON_SYNONYMOUS_CODING CG2712 UPSTREAM ttm50	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	13815048	3R_13815048_SNP [dm3] 3R_17989326_SNP [dm6]	T	G	4.414e^-4	0.942	INTRON cpo
3R	10184286	3R_10184286_SNP [dm3] 3R_14358564_SNP [dm6]	A	T	4.421e^-4	0.942	UTR_3_PRIME CG31320 INTRON NK7.1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25234774	3R_25234774_SNP [dm3] 3R_29409052_SNP [dm6]	G	A	4.422e^-4	0.942	INTRON Ptp99A
2L	10323301	2L_10323301_SNP [dm3] 2L_10323301_SNP [dm6]	G	T	4.425e^-4	0.942	UPSTREAM CG4995 & 1 other INTRON CG4995
3R	21328210	3R_21328210_SNP [dm3] 3R_25502488_SNP [dm6]	T	C	4.430e^-4	0.942	UPSTREAM CR43457 & 1 other INTRON CR43456	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	8441041	2L_8441041_SNP [dm3] 2L_8441041_SNP [dm6]	T	A	4.441e^-4	0.942	SYNONYMOUS_CODING mus201
2L	711559	2L_711559_SNP [dm3] 2L_711559_SNP [dm6]	T	G	4.442e^-4	0.942	INTRON ds & 1 other
X	6119236	X_6119236_SNP [dm3] X_6225203_SNP [dm6]	C	T	4.446e^-4	0.942	UPSTREAM sqh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	1145757	2L_1145757_SNP [dm3] 2L_1145757_SNP [dm6]	T	C	4.446e^-4	0.942	SYNONYMOUS_CODING MFS3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1262048	3L_1262048_SNP [dm3] 3L_1262048_SNP [dm6]	T	C	4.447e^-4	0.942	INTRON CG9134
3L	1995586	3L_1995586_SNP [dm3] 3L_1995586_SNP [dm6]	G	T	4.447e^-4	0.942	INTERGENIC
3R	3461693	3R_3461693_SNP [dm3] 3R_7635971_SNP [dm6]	T	C	4.452e^-4	0.942	INTRON CG34127
3R	22615287	3R_22615287_SNP [dm3] 3R_26789565_SNP [dm6]	G	C	4.462e^-4	0.942	INTERGENIC
3R	14697792	3R_14697792_INS [dm3] 3R_18872070_INS [dm6]	T	TC	4.463e^-4	0.942	INTERGENIC
3R	22193038	3R_22193038_SNP [dm3] 3R_26367316_SNP [dm6]	A	T	4.463e^-4	0.942	INTERGENIC
2R	7643679	2R_7643679_SNP [dm3] 2R_11756174_SNP [dm6]	A	T	4.468e^-4	0.942	UPSTREAM ths INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	7075673	2R_7075673_SNP [dm3] 2R_11188168_SNP [dm6]	T	G	4.474e^-4	0.942	INTRON shn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	17185171	2L_17185171_SNP [dm3] 2L_17185171_SNP [dm6]	G	T	4.476e^-4	0.942	INTERGENIC
3R	25812562	3R_25812562_SNP [dm3] 3R_29986840_SNP [dm6]	C	T	4.477e^-4	0.942	INTRON CG7896	TF binding site mE1_TFBS_HSA
3L	15099174	3L_15099174_SNP [dm3] 3L_15106074_SNP [dm6]	A	G	4.477e^-4	0.942	INTRON CTPsyn & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5112198	3R_5112198_SNP [dm3] 3R_9286476_SNP [dm6]	G	T	4.482e^-4	0.942	INTERGENIC
3L	12046227	3L_12046227_SNP [dm3] 3L_12053127_SNP [dm6]	G	A	4.484e^-4	0.942	INTRON rols
3R	27295170	3R_27295170_SNP [dm3] 3R_31469448_SNP [dm6]	C	A	4.485e^-4	0.942	EXON CR45554	TF binding site BDTNP1_TFBS_z mE1_TFBS_chinmo mE1_TFBS_HSA
X	8532042	X_8532042_SNP [dm3] X_8638009_SNP [dm6]	A	C	4.487e^-4	0.942	INTRON oc	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2R	13507361	2R_13507361_SNP [dm3] 2R_17619856_SNP [dm6]	A	G	4.490e^-4	0.942	INTRON CG10936
2R	16646049	2R_16646049_SNP [dm3] 2R_20758544_SNP [dm6]	C	T	4.495e^-4	0.942	INTERGENIC
2R	10069611	2R_10069611_SNP [dm3] 2R_14182106_SNP [dm6]	A	G	4.496e^-4	0.942	UTR_3_PRIME cg
3L	14082747	3L_14082747_SNP [dm3] 3L_14089647_SNP [dm6]	A	T	4.497e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	6536600	2R_6536600_SNP [dm3] 2R_10649095_SNP [dm6]	C	T	4.505e^-4	0.942	NON_SYNONYMOUS_CODING CG12934 DOWNSTREAM Elp2
2R	10841770	2R_10841770_SNP [dm3] 2R_14954265_SNP [dm6]	C	T	4.505e^-4	0.942	INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	26751980	3R_26751980_SNP [dm3] 3R_30926258_SNP [dm6]	A	G	4.518e^-4	0.942	INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	4643733	2L_4643733_SNP [dm3] 2L_4643733_SNP [dm6]	C	T	4.518e^-4	0.942	SYNONYMOUS_CODING CG15635 DOWNSTREAM BG642163	TF binding site mE1_TFBS_sens
3R	22794788	3R_22794788_SNP [dm3] 3R_26969066_SNP [dm6]	T	C	4.523e^-4	0.942	INTRON CG5521
2L	6682453	2L_6682453_SNP [dm3] 2L_6682453_SNP [dm6]	G	A	4.527e^-4	0.942	INTRON Nhe3	TF binding site mE1_TFBS_inv
2R	6157379	2R_6157379_SNP [dm3] 2R_10269874_SNP [dm6]	T	A	4.546e^-4	0.942	DOWNSTREAM CG12910 INTRON CAP
3L	5234995	3L_5234995_SNP [dm3] 3L_5241895_SNP [dm6]	A	T	4.564e^-4	0.942	INTRON shep
3R	17296579	3R_17296579_SNP [dm3] 3R_21470857_SNP [dm6]	G	A	4.569e^-4	0.942	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25289338	3R_25289338_SNP [dm3] 3R_29463616_SNP [dm6]	G	T	4.572e^-4	0.942	INTRON Ptp99A	TF binding site mE1_TFBS_cad
3R	22193088	3R_22193088_SNP [dm3] 3R_26367366_SNP [dm6]	G	C	4.575e^-4	0.942	INTERGENIC
2L	4813873	2L_4813873_SNP [dm3] 2L_4813873_SNP [dm6]	G	A	4.587e^-4	0.942	INTRON CG15629
3L	8532048	3L_8532048_SNP [dm3] 3L_8538948_SNP [dm6]	A	G	4.589e^-4	0.942	DOWNSTREAM ergic53 INTERGENIC
2L	4815767	2L_4815767_SNP [dm3] 2L_4815767_SNP [dm6]	C	A	4.593e^-4	0.942	SYNONYMOUS_CODING CG15629 UTR_3_PRIME CG3225
3R	12036711	3R_12036711_SNP [dm3] 3R_16210989_SNP [dm6]	A	G	4.603e^-4	0.942	INTERGENIC
3R	13199863	3R_13199863_SNP [dm3] 3R_17374141_SNP [dm6]	T	G	4.604e^-4	0.942	DOWNSTREAM Brf INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	13199866	3R_13199866_DEL [dm3] 3R_17374144_DEL [dm6]	AT	A	4.604e^-4	0.942	DOWNSTREAM Brf INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	7647170	2R_7647170_SNP [dm3] 2R_11759665_SNP [dm6]	G	A	4.606e^-4	0.942	INTRON ths
X	3538400	X_3538400_SNP [dm3] X_3644367_SNP [dm6]	G	T	4.629e^-4	0.942	INTRON AstA-R1
2L	17765125	2L_17765125_INS [dm3] 2L_17765125_INS [dm6]	A	AGTTGTGGA	4.630e^-4	0.942	INTRON CadN
2L	4812023	2L_4812023_SNP [dm3] 2L_4812023_SNP [dm6]	T	A	4.633e^-4	0.942	UPSTREAM CR45297 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_zfh1
2R	13512132	2R_13512132_SNP [dm3] 2R_17624627_SNP [dm6]	C	T	4.635e^-4	0.942	INTRON CG10936
3L	1842493	3L_1842493_SNP [dm3] 3L_1842493_SNP [dm6]	T	C	4.636e^-4	0.942	UPSTREAM Cpr62Bc INTERGENIC
2L	16465360	2L_16465360_SNP [dm3] 2L_16465360_SNP [dm6]	A	G	4.643e^-4	0.942	INTERGENIC	regulatory region REDfly_CRMs
2L	13360290	2L_13360290_SNP [dm3] 2L_13360290_SNP [dm6]	T	C	4.647e^-4	0.942	SYNONYMOUS_CODING CG9377	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8453999	3L_8453999_INS [dm3] 3L_8460899_INS [dm6]	C	CC	4.660e^-4	0.942	INTRON Gug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19086011	3L_19086011_SNP [dm3] 3L_19092911_SNP [dm6]	G	T	4.671e^-4	0.942	SYNONYMOUS_CODING MESR6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17163916	2L_17163916_SNP [dm3] 2L_17163916_SNP [dm6]	A	G	4.673e^-4	0.942	INTRON beat-IIIa & 1 other
2R	16128139	2R_16128139_SNP [dm3] 2R_20240634_SNP [dm6]	C	A	4.673e^-4	0.942	SYNONYMOUS_CODING Efhc1.2	TF binding site mE1_TFBS_chinmo
X	10276880	X_10276880_INS [dm3] X_10382847_INS [dm6]	A	AC	4.676e^-4	0.942	UTR_3_PRIME CG17841 DOWNSTREAM Psf3
X	13035092	X_13035092_SNP [dm3] X_13141059_SNP [dm6]	C	G	4.680e^-4	0.942	INTRON CG32645
3L	562632	3L_562632_SNP [dm3] 3L_562632_SNP [dm6]	T	C	4.680e^-4	0.942	INTRON hipk
3L	285560	3L_285560_SNP [dm3] 3L_285560_SNP [dm6]	G	A	4.683e^-4	0.942	INTRON RhoGEF3
3L	15567219	3L_15567219_SNP [dm3] 3L_15574119_SNP [dm6]	G	T	4.697e^-4	0.942	INTRON CG6498	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	19024049	2R_19024049_SNP [dm3] 2R_23136526_SNP [dm6]	G	A	4.700e^-4	0.942	INTERGENIC
3L	2522573	3L_2522573_SNP [dm3] 3L_2522573_SNP [dm6]	A	G	4.705e^-4	0.942	INTRON Spn
2R	19280599	2R_19280599_SNP [dm3] 2R_23393076_SNP [dm6]	A	C	4.708e^-4	0.942	UTR_5_PRIME CG3530 INTRON CG3530	TF binding site mE1_TFBS_chinmo
X	11588837	X_11588837_SNP [dm3] X_11694804_SNP [dm6]	A	G	4.709e^-4	0.942	UPSTREAM PhKgamma DOWNSTREAM bif INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	4815411	2L_4815411_SNP [dm3] 2L_4815411_SNP [dm6]	C	T	4.709e^-4	0.942	SYNONYMOUS_CODING CG15629 DOWNSTREAM CG3225
2R	2355715	2R_2355715_SNP [dm3] 2R_6468210_SNP [dm6]	C	A	4.709e^-4	0.942	INTERGENIC	transposable element FlyBase
2R	13507369	2R_13507369_SNP [dm3] 2R_17619864_SNP [dm6]	T	G	4.720e^-4	0.942	INTRON CG10936
X	16709594	X_16709594_SNP [dm3] X_16815561_SNP [dm6]	C	T	4.732e^-4	0.942	INTRON CG4829 EXON CR44129
2R	18460000	2R_18460000_SNP [dm3] 2R_22572495_SNP [dm6]	A	T	4.732e^-4	0.942	INTRON dnr1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15755247	2L_15755247_SNP [dm3] 2L_15755247_SNP [dm6]	T	C	4.738e^-4	0.942	SYNONYMOUS_CODING l_2_35Df DOWNSTREAM Gli	TF binding site mE1_TFBS_cad
2L	9672008	2L_9672008_INS [dm3] 2L_9672008_INS [dm6]	T	AAACTTATTTG...	4.742e^-4	0.942	UPSTREAM CR44150 INTERGENIC
2L	17278994	2L_17278994_SNP [dm3] 2L_17278994_SNP [dm6]	A	C	4.744e^-4	0.942	INTERGENIC
2L	9443864	2L_9443864_SNP [dm3] 2L_9443864_SNP [dm6]	C	T	4.749e^-4	0.942	INTRON numb
2R	19373690	2R_19373690_SNP [dm3] 2R_23486167_SNP [dm6]	A	T	4.754e^-4	0.942	INTRON CG43795
2R	1972222	2R_1972222_SNP [dm3] 2R_6084717_SNP [dm6]	A	G	4.766e^-4	0.942	SYNONYMOUS_CODING Ars2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15479981	2R_15479981_SNP [dm3] 2R_19592476_SNP [dm6]	T	G	4.770e^-4	0.942	INTRON sm
3R	11937436	3R_11937436_SNP [dm3] 3R_16111714_SNP [dm6]	G	T	4.779e^-4	0.942	INTERGENIC
3L	15094448	3L_15094448_SNP [dm3] 3L_15101348_SNP [dm6]	C	T	4.780e^-4	0.942	INTRON CTPsyn EXON CR43972	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
X	21958452	X_21958452_SNP [dm3] X_22556616_SNP [dm6]	C	A	4.786e^-4	0.942	INTERGENIC
2R	1943256	2R_1943256_DEL [dm3] 2R_6055751_DEL [dm6]	TT	T	4.794e^-4	0.942	INTRON CCHa2-R
3R	22784553	3R_22784553_SNP [dm3] 3R_26958831_SNP [dm6]	T	C	4.800e^-4	0.942	UPSTREAM CG6330 INTERGENIC
2R	1972223	2R_1972223_SNP [dm3] 2R_6084718_SNP [dm6]	C	G	4.801e^-4	0.942	NON_SYNONYMOUS_CODING Ars2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	20793449	X_20793449_INS [dm3] X_20922422_INS [dm6]	T	TATT	4.805e^-4	0.942	INTRON shakB
2R	16125003	2R_16125003_SNP [dm3] 2R_20237498_SNP [dm6]	G	A	4.823e^-4	0.942	DOWNSTREAM CG13869 INTRON CG11099
3R	23993190	3R_23993190_SNP [dm3] 3R_28167468_SNP [dm6]	C	T	4.827e^-4	0.942	INTRON CG34354
X	21958854	X_21958854_INS [dm3] X_22557018_INS [dm6]	A	ATTTCTGACAA...	4.827e^-4	0.942	INTERGENIC	transposable element FlyBase
2L	5889300	2L_5889300_SNP [dm3] 2L_5889300_SNP [dm6]	C	T	4.838e^-4	0.942	DOWNSTREAM CR44578 INTERGENIC
2L	13347575	2L_13347575_SNP [dm3] 2L_13347575_SNP [dm6]	C	A	4.840e^-4	0.942	UPSTREAM CG16826 INTERGENIC
2L	4808704	2L_4808704_SNP [dm3] 2L_4808704_SNP [dm6]	T	A	4.846e^-4	0.942	INTERGENIC
3L	8764229	3L_8764229_SNP [dm3] 3L_8771129_SNP [dm6]	C	G	4.847e^-4	0.942	INTRON Fhos
3L	3685646	3L_3685646_SNP [dm3] 3L_3685646_SNP [dm6]	G	A	4.850e^-4	0.942	INTERGENIC
3R	9383346	3R_9383346_SNP [dm3] 3R_13557624_SNP [dm6]	A	G	4.853e^-4	0.942	INTERGENIC
X	14859263	X_14859263_SNP [dm3] X_14965230_SNP [dm6]	G	C	4.870e^-4	0.942	INTRON eag
3R	26337052	3R_26337052_SNP [dm3] 3R_30511330_SNP [dm6]	C	A	4.872e^-4	0.942	SPLICE_SITE_REGION PH4alphaNE2 DOWNSTREAM CG31524 INTRON PH4alphaNE2
X	11906927	X_11906927_SNP [dm3] X_12012894_SNP [dm6]	G	A	4.875e^-4	0.942	UPSTREAM CG1492 INTRON regucalcin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6541411	3R_6541411_SNP [dm3] 3R_10715689_SNP [dm6]	C	T	4.881e^-4	0.942	SYNONYMOUS_CODING CG4073
X	6119484	X_6119484_SNP [dm3] X_6225451_SNP [dm6]	A	T	4.883e^-4	0.942	UPSTREAM sqh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D
3R	27007312	3R_27007312_SNP [dm3] 3R_31181590_SNP [dm6]	T	C	4.886e^-4	0.942	SYNONYMOUS_CODING mesh
2R	17865845	2R_17865845_SNP [dm3] 2R_21978340_SNP [dm6]	T	C	4.894e^-4	0.942	UTR_3_PRIME Gr58b DOWNSTREAM Gr58c
2R	10324405	2R_10324405_SNP [dm3] 2R_14436900_SNP [dm6]	A	T	4.899e^-4	0.942	INTRON Oaz	TF binding site mE1_TFBS_HSA
2R	5793958	2R_5793958_SNP [dm3] 2R_9906453_SNP [dm6]	G	A	4.900e^-4	0.942	INTRON FMRFa
2L	17017786	2L_17017786_SNP [dm3] 2L_17017786_SNP [dm6]	G	T	4.901e^-4	0.942	EXON CR45462
X	12171692	X_12171692_SNP [dm3] X_12277659_SNP [dm6]	T	A	4.902e^-4	0.942	INTRON Ten-a
2L	17376884	2L_17376884_SNP [dm3] 2L_17376884_SNP [dm6]	T	C	4.913e^-4	0.942	INTRON Lrch
2R	15871655	2R_15871655_SNP [dm3] 2R_19984150_SNP [dm6]	C	T	4.923e^-4	0.942	UTR_3_PRIME CG8654	TF binding site mE1_TFBS_cad
3R	26303707	3R_26303707_SNP [dm3] 3R_30477985_SNP [dm6]	C	T	4.926e^-4	0.942	SYNONYMOUS_CODING spdo INTRON PH4alphaEFB	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	709600	2L_709600_DEL [dm3] 2L_709600_DEL [dm6]	AA	A	4.930e^-4	0.942	UPSTREAM CR44988 INTRON ds
3L	3934566	3L_3934566_SNP [dm3] 3L_3934566_SNP [dm6]	T	A	4.930e^-4	0.942	UPSTREAM Eip63F-1 & 1 other INTRON Eip63F-1
2L	11927904	2L_11927904_SNP [dm3] 2L_11927904_SNP [dm6]	G	T	4.931e^-4	0.942	INTRON Pde1c
2L	17242750	2L_17242750_SNP [dm3] 2L_17242750_SNP [dm6]	G	C	4.937e^-4	0.942	INTRON beat-IIIc
2R	15880321	2R_15880321_SNP [dm3] 2R_19992816_SNP [dm6]	G	C	4.939e^-4	0.942	INTERGENIC
2L	16453361	2L_16453361_SNP [dm3] 2L_16453361_SNP [dm6]	G	T	4.942e^-4	0.942	UTR_3_PRIME Idgf3 DOWNSTREAM Idgf3	regulatory region REDfly_CRMs
3R	27000933	3R_27000933_SNP [dm3] 3R_31175211_SNP [dm6]	G	A	4.942e^-4	0.942	INTRON Gycbeta100B
3L	15099219	3L_15099219_SNP [dm3] 3L_15106119_SNP [dm6]	G	A	4.943e^-4	0.942	INTRON CTPsyn & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22804372	3R_22804372_SNP [dm3] 3R_26978650_SNP [dm6]	A	T	4.947e^-4	0.942	UTR_5_PRIME CG14253 DOWNSTREAM CG5521
2R	13788151	2R_13788151_SNP [dm3] 2R_17900646_SNP [dm6]	G	C	4.948e^-4	0.942	INTRON Elk	TF binding site BDTNP1_TFBS_twi
3R	14697805	3R_14697805_SNP [dm3] 3R_18872083_SNP [dm6]	C	T	4.970e^-4	0.942	INTERGENIC
2L	16099844	2L_16099844_SNP [dm3] 2L_16099844_SNP [dm6]	T	G	4.973e^-4	0.942	INTERGENIC
X	21058487	X_21058487_SNP [dm3] X_21187460_SNP [dm6]	A	G	4.986e^-4	0.942	UPSTREAM CR45506 INTERGENIC
2L	16204496	2L_16204496_SNP [dm3] 2L_16204496_SNP [dm6]	T	A	4.988e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	13199872	3R_13199872_SNP [dm3] 3R_17374150_SNP [dm6]	C	G	4.989e^-4	0.942	DOWNSTREAM Brf INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	2070426	2R_2070426_SNP [dm3] 2R_6182921_SNP [dm6]	C	T	4.989e^-4	0.942	SYNONYMOUS_CODING Ptr	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	2354641	2R_2354641_SNP [dm3] 2R_6467136_SNP [dm6]	A	C	4.991e^-4	0.942	INTERGENIC	transposable element FlyBase
X	21953227	X_21953227_SNP [dm3] X_22551391_SNP [dm6]	C	T	4.995e^-4	0.942	INTERGENIC	transposable element FlyBase
3L	1412746	3L_1412746_SNP [dm3] 3L_1412746_SNP [dm6]	G	A	5.004e^-4	0.942	NON_SYNONYMOUS_CODING CG9168 INTRON Ptp61F
3R	17240103	3R_17240103_SNP [dm3] 3R_21414381_SNP [dm6]	C	T	5.009e^-4	0.942	INTRON lbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	18041798	2L_18041798_SNP [dm3] 2L_18041798_SNP [dm6]	T	A	5.011e^-4	0.942	INTRON rdo
X	21958425	X_21958425_DEL [dm3] X_22556589_DEL [dm6]	GTTTT	A	5.017e^-4	0.942	INTERGENIC
2R	13739344	2R_13739344_SNP [dm3] 2R_17851839_SNP [dm6]	G	A	5.022e^-4	0.942	INTRON olf186-F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Trl
X	15427258	X_15427258_SNP [dm3] X_15533225_SNP [dm6]	G	A	5.027e^-4	0.942	INTRON Ac13E
2R	10676323	2R_10676323_SNP [dm3] 2R_14788818_SNP [dm6]	A	C	5.029e^-4	0.942	INTRON kn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	9691235	X_9691235_SNP [dm3] X_9797202_SNP [dm6]	A	T	5.029e^-4	0.942	INTRON CG32698
3L	326638	3L_326638_SNP [dm3] 3L_326638_SNP [dm6]	G	A	5.033e^-4	0.942	INTRON Atac3

By genomic position
Variant impact
Gene name

se_AlcoholTolerance phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results