DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.778e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	1.169e-07
In_2R_NS	0.005484

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_Mo	5.1118	0.0776

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2287 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	13369826	3L_13369826_SNP [dm3] 3L_13376726_SNP [dm6]	T	G	1.788e^-7	0.2	INTERGENIC
3L	13369904	3L_13369904_SNP [dm3] 3L_13376804_SNP [dm6]	T	A	2.136e^-7	0.2	INTERGENIC
3R	13955423	3R_13955423_SNP [dm3] 3R_18129701_SNP [dm6]	C	T	4.656e^-7	0.265	INTRON sr	TF binding site mE1_TFBS_inv
3R	14873592	3R_14873592_SNP [dm3] 3R_19047870_SNP [dm6]	G	A	5.656e^-7	0.265	INTRON cdi
3L	2724250	3L_2724250_DEL [dm3] 3L_2724250_DEL [dm6]	CACGTCGATGA...	C	7.815e^-7	0.293	INTRON Mrtf
3R	20011585	3R_20011585_SNP [dm3] 3R_24185863_SNP [dm6]	T	A	1.414e^-6	0.415	UPSTREAM CHORD INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	15990399	3L_15990399_SNP [dm3] 3L_15997299_SNP [dm6]	G	A	1.682e^-6	0.415	INTRON CG5830
3R	20011979	3R_20011979_SNP [dm3] 3R_24186257_SNP [dm6]	C	A	1.869e^-6	0.415	UPSTREAM CHORD INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4422951	X_4422951_DEL [dm3] X_4528918_DEL [dm6]	TT	T	2.145e^-6	0.415	INTRON CR32773
3L	13077790	3L_13077790_SNP [dm3] 3L_13084690_SNP [dm6]	T	C	2.346e^-6	0.415	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4340935	2L_4340935_SNP [dm3] 2L_4340935_SNP [dm6]	C	T	2.431e^-6	0.415	INTRON Atet
3R	20012063	3R_20012063_SNP [dm3] 3R_24186341_SNP [dm6]	G	T	3.084e^-6	0.482	UPSTREAM CHORD INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13763779	3R_13763779_SNP [dm3] 3R_17938057_SNP [dm6]	G	A	3.732e^-6	0.482	INTRON cpo
3R	6009157	3R_6009157_SNP [dm3] 3R_10183435_SNP [dm6]	T	C	4.211e^-6	0.482	INTRON CG12814
3L	6254404	3L_6254404_SNP [dm3] 3L_6261304_SNP [dm6]	T	A	4.664e^-6	0.482	UPSTREAM ImpL3 INTRON ImpL3
X	1160710	X_1160710_SNP [dm3] X_1266677_SNP [dm6]	T	G	4.913e^-6	0.482	INTRON Atf3
2L	7041758	2L_7041758_SNP [dm3] 2L_7041758_SNP [dm6]	A	C	5.089e^-6	0.482	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9544339	2R_9544339_SNP [dm3] 2R_13656834_SNP [dm6]	T	C	5.289e^-6	0.482	INTRON fas
3L	10896881	3L_10896881_SNP [dm3] 3L_10903781_SNP [dm6]	A	C	5.290e^-6	0.482	INTERGENIC
3R	13652542	3R_13652542_SNP [dm3] 3R_17826820_SNP [dm6]	T	G	5.487e^-6	0.482	INTRON tinc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7061557	3L_7061557_SNP [dm3] 3L_7068457_SNP [dm6]	C	T	5.607e^-6	0.482	DOWNSTREAM CG14823 INTRON CG8641 & 1 other
X	5701044	X_5701044_SNP [dm3] X_5807011_SNP [dm6]	C	A	5.810e^-6	0.482	INTERGENIC
X	5701047	X_5701047_MNP [dm3] X_5807014_MNP [dm6]	CATC	TGGA	6.117e^-6	0.482	INTERGENIC
3R	20011829	3R_20011829_SNP [dm3] 3R_24186107_SNP [dm6]	G	A	6.163e^-6	0.482	UPSTREAM CHORD INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	7061550	3L_7061550_SNP [dm3] 3L_7068450_SNP [dm6]	T	G	6.688e^-6	0.502	DOWNSTREAM CG14823 INTRON CG8641 & 1 other
3L	4397995	3L_4397995_SNP [dm3] 3L_4397995_SNP [dm6]	C	A	7.609e^-6	0.51	INTRON slow
3L	6254943	3L_6254943_SNP [dm3] 3L_6261843_SNP [dm6]	C	T	7.822e^-6	0.51	UPSTREAM ImpL3 INTRON ImpL3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9544338	2R_9544338_SNP [dm3] 2R_13656833_SNP [dm6]	C	A	8.279e^-6	0.51	INTRON fas
3R	10816056	3R_10816056_SNP [dm3] 3R_14990334_SNP [dm6]	T	C	8.300e^-6	0.51	INTERGENIC
X	780023	X_780023_SNP [dm3] X_885990_SNP [dm6]	A	C	8.330e^-6	0.51	INTRON CG43867	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	4340377	2L_4340377_SNP [dm3] 2L_4340377_SNP [dm6]	G	A	8.430e^-6	0.51	INTRON Atet
2L	16011302	2L_16011302_SNP [dm3] 2L_16011302_SNP [dm6]	A	G	9.997e^-6	0.54	INTRON beat-Ic
X	19788153	X_19788153_SNP [dm3] X_19894120_SNP [dm6]	C	T	1.028e^-5	0.54	INTRON Hers	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	4423303	X_4423303_SNP [dm3] X_4529270_SNP [dm6]	T	C	1.086e^-5	0.54	UPSTREAM CG3556 INTRON CR32773
3R	25596408	3R_25596408_SNP [dm3] 3R_29770686_SNP [dm6]	A	T	1.117e^-5	0.54	INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	16011399	2L_16011399_INS [dm3] 2L_16011399_INS [dm6]	A	AATCAA	1.122e^-5	0.54	INTRON beat-Ic
3R	20011918	3R_20011918_SNP [dm3] 3R_24186196_SNP [dm6]	C	T	1.126e^-5	0.54	UPSTREAM CHORD INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	17729580	2L_17729580_SNP [dm3] 2L_17729580_SNP [dm6]	T	C	1.131e^-5	0.54	INTRON CadN	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	16011380	2L_16011380_DEL [dm3] 2L_16011380_DEL [dm6]	CC	C	1.229e^-5	0.54	INTRON beat-Ic
3R	20011887	3R_20011887_SNP [dm3] 3R_24186165_SNP [dm6]	C	T	1.233e^-5	0.54	UPSTREAM CHORD INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	15514382	3R_15514382_SNP [dm3] 3R_19688660_SNP [dm6]	T	G	1.256e^-5	0.54	INTRON Naam	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	1616708	X_1616708_SNP [dm3] X_1722675_SNP [dm6]	G	T	1.269e^-5	0.54	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	1160748	X_1160748_SNP [dm3] X_1266715_SNP [dm6]	A	G	1.271e^-5	0.54	INTRON Atf3
3R	3487812	3R_3487812_SNP [dm3] 3R_7662090_SNP [dm6]	G	A	1.280e^-5	0.54	INTRON Nlg1
3R	20011165	3R_20011165_SNP [dm3] 3R_24185443_SNP [dm6]	G	A	1.295e^-5	0.54	UPSTREAM CHORD INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	20012001	3R_20012001_SNP [dm3] 3R_24186279_SNP [dm6]	T	A	1.400e^-5	0.549	UPSTREAM CHORD INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13076823	3L_13076823_SNP [dm3] 3L_13083723_SNP [dm6]	A	C	1.401e^-5	0.549	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	13370166	3L_13370166_SNP [dm3] 3L_13377066_SNP [dm6]	T	C	1.404e^-5	0.549	UPSTREAM CG14111 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	16011271	2L_16011271_INS [dm3] 2L_16011271_INS [dm6]	T	TATT	1.457e^-5	0.549	INTRON beat-Ic
X	1160711	X_1160711_SNP [dm3] X_1266678_SNP [dm6]	T	C	1.483e^-5	0.549	INTRON Atf3
3L	4397994	3L_4397994_SNP [dm3] 3L_4397994_SNP [dm6]	A	T	1.493e^-5	0.549	INTRON slow
2L	16340681	2L_16340681_SNP [dm3] 2L_16340681_SNP [dm6]	T	A	1.540e^-5	0.556	NON_SYNONYMOUS_CODING CG44405 UPSTREAM CG42266	TF binding site mE1_TFBS_sens
3R	9629265	3R_9629265_SNP [dm3] 3R_13803543_SNP [dm6]	G	A	1.613e^-5	0.567	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16011277	2L_16011277_SNP [dm3] 2L_16011277_SNP [dm6]	T	G	1.647e^-5	0.567	INTRON beat-Ic
3R	14536450	3R_14536450_SNP [dm3] 3R_18710728_SNP [dm6]	T	C	1.724e^-5	0.567	INTRON VAChT & 1 other
2L	7174366	2L_7174366_SNP [dm3] 2L_7174366_SNP [dm6]	G	T	1.801e^-5	0.567	DOWNSTREAM CR44610 INTERGENIC
2L	1484112	2L_1484112_SNP [dm3] 2L_1484112_SNP [dm6]	A	G	1.942e^-5	0.567	INTERGENIC
2L	10803287	2L_10803287_INS [dm3] 2L_10803287_INS [dm6]	G	GG	2.053e^-5	0.567	UPSTREAM CR44581 DOWNSTREAM Nos INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	6107755	2L_6107755_SNP [dm3] 2L_6107755_SNP [dm6]	A	T	2.132e^-5	0.567	INTRON stai
3L	6239356	3L_6239356_SNP [dm3] 3L_6246256_SNP [dm6]	C	A	2.168e^-5	0.567	UTR_3_PRIME Best2 UPSTREAM Mdr65
2L	16011249	2L_16011249_SNP [dm3] 2L_16011249_SNP [dm6]	C	T	2.198e^-5	0.567	INTRON beat-Ic
3L	6243027	3L_6243027_SNP [dm3] 3L_6249927_SNP [dm6]	T	A	2.208e^-5	0.567	INTRON Best2
2R	2418422	2R_2418422_SNP [dm3] 2R_6530917_SNP [dm6]	A	G	2.220e^-5	0.567	INTRON jing	TF binding site mE1_TFBS_cad
3L	14512920	3L_14512920_SNP [dm3] 3L_14519820_SNP [dm6]	A	G	2.242e^-5	0.567	UTR_3_PRIME CG4613 INTRON bbg
3L	13083190	3L_13083190_SNP [dm3] 3L_13090090_SNP [dm6]	A	T	2.258e^-5	0.567	UPSTREAM CG11251 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	13082500	3L_13082500_SNP [dm3] 3L_13089400_SNP [dm6]	A	G	2.292e^-5	0.567	SYNONYMOUS_CODING CG11251 DOWNSTREAM CR45749	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	5797545	2L_5797545_SNP [dm3] 2L_5797545_SNP [dm6]	T	G	2.364e^-5	0.567	INTRON CG9171
3R	20011166	3R_20011166_SNP [dm3] 3R_24185444_SNP [dm6]	A	G	2.379e^-5	0.567	UPSTREAM CHORD INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	5010054	X_5010054_SNP [dm3] X_5116021_SNP [dm6]	T	A	2.394e^-5	0.567	INTRON rg & 1 other
3R	13767858	3R_13767858_SNP [dm3] 3R_17942136_SNP [dm6]	A	T	2.415e^-5	0.567	INTRON cpo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14536372	3R_14536372_SNP [dm3] 3R_18710650_SNP [dm6]	A	G	2.483e^-5	0.567	INTRON VAChT & 1 other
3R	3486706	3R_3486706_SNP [dm3] 3R_7660984_SNP [dm6]	A	T	2.494e^-5	0.567	INTRON Nlg1
2R	9971618	2R_9971618_SNP [dm3] 2R_14084113_SNP [dm6]	G	C	2.503e^-5	0.567	INTRON Prosap
2R	9544345	2R_9544345_SNP [dm3] 2R_13656840_SNP [dm6]	C	G	2.517e^-5	0.567	INTRON fas
3L	6252879	3L_6252879_SNP [dm3] 3L_6259779_SNP [dm6]	G	T	2.560e^-5	0.567	SYNONYMOUS_CODING ImpL3
3L	6254060	3L_6254060_DEL [dm3] 3L_6260960_DEL [dm6]	CT	C	2.560e^-5	0.567	INTRON ImpL3
2R	18679927	2R_18679927_SNP [dm3] 2R_22792422_SNP [dm6]	A	T	2.573e^-5	0.567	INTRON CG42260
3R	3483209	3R_3483209_SNP [dm3] 3R_7657487_SNP [dm6]	T	A	2.601e^-5	0.567	UPSTREAM Nlg1 INTERGENIC
X	1071883	X_1071883_SNP [dm3] X_1177850_SNP [dm6]	C	G	2.644e^-5	0.567	INTERGENIC
2R	10369537	2R_10369537_SNP [dm3] 2R_14482032_SNP [dm6]	C	A	2.671e^-5	0.567	INTRON L	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
X	4869925	X_4869925_SNP [dm3] X_4975892_SNP [dm6]	T	C	2.680e^-5	0.567	INTRON CR44833
2L	13439580	2L_13439580_SNP [dm3] 2L_13439580_SNP [dm6]	A	G	2.708e^-5	0.567	UTR_3_PRIME Tehao DOWNSTREAM Tehao INTRON CG42784 EXON CR45683
3R	13769905	3R_13769905_SNP [dm3] 3R_17944183_SNP [dm6]	A	T	2.723e^-5	0.567	UTR_5_PRIME cpo INTRON cpo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25930503	3R_25930503_SNP [dm3] 3R_30104781_SNP [dm6]	A	G	2.763e^-5	0.567	SYNONYMOUS_CODING sima INTRON sima
2R	6752379	2R_6752379_SNP [dm3] 2R_10864874_SNP [dm6]	A	C	2.798e^-5	0.567	INTRON CG30015
3R	20994253	3R_20994253_SNP [dm3] 3R_25168531_SNP [dm6]	G	A	2.803e^-5	0.567	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2L	5797679	2L_5797679_SNP [dm3] 2L_5797679_SNP [dm6]	A	T	2.838e^-5	0.567	INTRON CG9171
2L	21377436	2L_21377436_SNP [dm3] 2L_21377436_SNP [dm6]	T	C	2.869e^-5	0.567	UTR_3_PRIME CG8665
3L	13399488	3L_13399488_SNP [dm3] 3L_13406388_SNP [dm6]	T	C	2.877e^-5	0.567	INTERGENIC
3L	21121365	3L_21121365_SNP [dm3] 3L_21128265_SNP [dm6]	T	A	2.885e^-5	0.567	INTRON ko
3L	13142696	3L_13142696_SNP [dm3] 3L_13149596_SNP [dm6]	A	G	2.938e^-5	0.567	INTERGENIC
3L	14529616	3L_14529616_SNP [dm3] 3L_14536516_SNP [dm6]	G	A	2.946e^-5	0.567	UPSTREAM CG43246 & 1 other INTERGENIC
X	719514	X_719514_SNP [dm3] X_825481_SNP [dm6]	A	G	3.048e^-5	0.567	INTRON CG43867	TF binding site BDTNP1_TFBS_z
3L	6253710	3L_6253710_SNP [dm3] 3L_6260610_SNP [dm6]	C	T	3.079e^-5	0.567	SYNONYMOUS_CODING ImpL3
3R	13955844	3R_13955844_SNP [dm3] 3R_18130122_SNP [dm6]	T	A	3.083e^-5	0.567	INTRON sr	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	20012183	3R_20012183_SNP [dm3] 3R_24186461_SNP [dm6]	C	A	3.106e^-5	0.567	UTR_5_PRIME CHORD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11931953	2L_11931953_SNP [dm3] 2L_11931953_SNP [dm6]	C	T	3.146e^-5	0.567	INTERGENIC
2L	1477877	2L_1477877_SNP [dm3] 2L_1477877_SNP [dm6]	T	C	3.178e^-5	0.567	INTERGENIC
X	719664	X_719664_SNP [dm3] X_825631_SNP [dm6]	T	C	3.237e^-5	0.567	INTRON CG43867
3L	13142708	3L_13142708_SNP [dm3] 3L_13149608_SNP [dm6]	C	T	3.250e^-5	0.567	INTERGENIC
2L	4430671	2L_4430671_SNP [dm3] 2L_4430671_SNP [dm6]	T	G	3.279e^-5	0.567	INTRON CG15431
2R	17967462	2R_17967462_SNP [dm3] 2R_22079957_SNP [dm6]	G	C	3.309e^-5	0.567	UPSTREAM Synj DOWNSTREAM GlcT-1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	6252784	3L_6252784_SNP [dm3] 3L_6259684_SNP [dm6]	T	C	3.367e^-5	0.567	UTR_3_PRIME ImpL3 UPSTREAM CG10163
3L	14722832	3L_14722832_SNP [dm3] 3L_14729732_SNP [dm6]	T	A	3.408e^-5	0.567	DOWNSTREAM CG13473 INTRON ome
3L	17136573	3L_17136573_SNP [dm3] 3L_17143473_SNP [dm6]	C	G	3.462e^-5	0.567	INTRON Rbp6
2L	13439599	2L_13439599_SNP [dm3] 2L_13439599_SNP [dm6]	G	T	3.510e^-5	0.567	UTR_3_PRIME Tehao DOWNSTREAM Tehao INTRON CG42784 EXON CR45683
3L	6253824	3L_6253824_SNP [dm3] 3L_6260724_SNP [dm6]	G	C	3.521e^-5	0.567	SYNONYMOUS_CODING ImpL3
2R	6562877	2R_6562877_DEL [dm3] 2R_10675372_DEL [dm6]	ATTAAGAGTTAAAGGC...	A	3.547e^-5	0.567	INTRON stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	6254991	3L_6254991_SNP [dm3] 3L_6261891_SNP [dm6]	T	C	3.599e^-5	0.567	UPSTREAM ImpL3 INTRON ImpL3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	719660	X_719660_SNP [dm3] X_825627_SNP [dm6]	T	G	3.607e^-5	0.567	INTRON CG43867
2L	4184327	2L_4184327_SNP [dm3] 2L_4184327_SNP [dm6]	A	G	3.609e^-5	0.567	INTERGENIC
2L	4342884	2L_4342884_SNP [dm3] 2L_4342884_SNP [dm6]	C	T	3.634e^-5	0.567	SYNONYMOUS_CODING Atet UPSTREAM mir-1005	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11062625	3L_11062625_SNP [dm3] 3L_11069525_SNP [dm6]	G	A	3.680e^-5	0.567	SYNONYMOUS_CODING CG6310 DOWNSTREAM SuUR & 1 other
3R	856580	3R_856580_SNP [dm3] 3R_5030858_SNP [dm6]	A	G	3.718e^-5	0.567	INTERGENIC
3L	14088047	3L_14088047_SNP [dm3] 3L_14094947_SNP [dm6]	T	C	3.724e^-5	0.567	NON_SYNONYMOUS_CODING Fbp1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20667869	3R_20667869_SNP [dm3] 3R_24842147_SNP [dm6]	G	A	3.742e^-5	0.567	UTR_5_PRIME Esp UPSTREAM CG33658
3R	3488074	3R_3488074_SNP [dm3] 3R_7662352_SNP [dm6]	C	T	3.772e^-5	0.567	UTR_5_PRIME Nlg1
2L	16011216	2L_16011216_INS [dm3] 2L_16011216_INS [dm6]	C	ATTTCTTAATGTATA...	3.775e^-5	0.567	INTRON beat-Ic
2L	16011252	2L_16011252_SNP [dm3] 2L_16011252_SNP [dm6]	G	C	3.819e^-5	0.567	INTRON beat-Ic
2R	10369562	2R_10369562_SNP [dm3] 2R_14482057_SNP [dm6]	T	A	3.869e^-5	0.567	INTRON L	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2L	16011313	2L_16011313_SNP [dm3] 2L_16011313_SNP [dm6]	C	A	3.880e^-5	0.567	INTRON beat-Ic
2L	17272849	2L_17272849_SNP [dm3] 2L_17272849_SNP [dm6]	G	T	3.905e^-5	0.567	INTERGENIC
3R	20011694	3R_20011694_SNP [dm3] 3R_24185972_SNP [dm6]	A	G	3.996e^-5	0.567	UPSTREAM CHORD INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	2154663	2L_2154663_SNP [dm3] 2L_2154663_SNP [dm6]	C	G	4.013e^-5	0.567	SYNONYMOUS_CODING AIF	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	13768271	3R_13768271_SNP [dm3] 3R_17942549_SNP [dm6]	T	A	4.015e^-5	0.567	INTRON cpo	TF binding site mE1_TFBS_Trl
3L	14512910	3L_14512910_DEL [dm3] 3L_14519810_DEL [dm6]	CAAATAAA	T	4.033e^-5	0.567	UTR_3_PRIME CG4613 INTRON bbg
3R	22348743	3R_22348743_SNP [dm3] 3R_26523021_SNP [dm6]	G	T	4.078e^-5	0.567	DOWNSTREAM CR45226 INTRON plum
3L	3654154	3L_3654154_SNP [dm3] 3L_3654154_SNP [dm6]	G	T	4.086e^-5	0.567	NON_SYNONYMOUS_CODING CG10862 DOWNSTREAM dar1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13082476	3L_13082476_SNP [dm3] 3L_13089376_SNP [dm6]	C	G	4.169e^-5	0.567	SYNONYMOUS_CODING CG11251 DOWNSTREAM CR45749	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	10369554	2R_10369554_SNP [dm3] 2R_14482049_SNP [dm6]	C	T	4.283e^-5	0.567	INTRON L	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3R	15514864	3R_15514864_SNP [dm3] 3R_19689142_SNP [dm6]	C	A	4.284e^-5	0.567	INTRON Naam
3R	6579370	3R_6579370_SNP [dm3] 3R_10753648_SNP [dm6]	G	T	4.308e^-5	0.567	SPLICE_SITE_REGION CG14691 INTRON CG14691	regulatory region REDfly_CRMs
3R	13549043	3R_13549043_SNP [dm3] 3R_17723321_SNP [dm6]	G	T	4.373e^-5	0.567	DOWNSTREAM Pxt INTERGENIC
3L	13125574	3L_13125574_SNP [dm3] 3L_13132474_SNP [dm6]	G	A	4.380e^-5	0.567	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	14873297	3R_14873297_SNP [dm3] 3R_19047575_SNP [dm6]	G	A	4.381e^-5	0.567	INTRON cdi	TF binding site mE1_TFBS_cad
3L	16656871	3L_16656871_SNP [dm3] 3L_16663771_SNP [dm6]	A	G	4.396e^-5	0.567	INTRON Galphaf	TF binding site mE1_TFBS_cad
2L	17835306	2L_17835306_SNP [dm3] 2L_17835306_SNP [dm6]	C	A	4.397e^-5	0.567	INTRON CadN2
X	719596	X_719596_SNP [dm3] X_825563_SNP [dm6]	A	C	4.401e^-5	0.567	INTRON CG43867	TF binding site BDTNP1_TFBS_z
2R	6637085	2R_6637085_SNP [dm3] 2R_10749580_SNP [dm6]	T	G	4.449e^-5	0.567	INTRON CG33144
3L	9499823	3L_9499823_DEL [dm3] 3L_9506723_DEL [dm6]	TAATTTGAATTGTTAGATTT...	T	4.455e^-5	0.567	DOWNSTREAM CG3408 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5832389	3L_5832389_SNP [dm3] 3L_5839289_SNP [dm6]	G	A	4.474e^-5	0.567	INTRON vn
X	841647	X_841647_SNP [dm3] X_947614_SNP [dm6]	C	T	4.487e^-5	0.567	UPSTREAM CG3699 DOWNSTREAM CG3690 INTERGENIC
2R	13595119	2R_13595119_SNP [dm3] 2R_17707614_SNP [dm6]	T	A	4.507e^-5	0.567	SYNONYMOUS_CODING CG6424	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18006810	2R_18006810_SNP [dm3] 2R_22119305_SNP [dm6]	A	G	4.536e^-5	0.567	INTRON Vrp1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14335003	3L_14335003_DEL [dm3] 3L_14341903_DEL [dm6]	TT	T	4.542e^-5	0.567	INTRON fz
2L	14701951	2L_14701951_INS [dm3] 2L_14701951_INS [dm6]	A	ATTTGT	4.608e^-5	0.567	INTERGENIC
2L	2871045	2L_2871045_SNP [dm3] 2L_2871045_SNP [dm6]	C	A	4.610e^-5	0.567	SYNONYMOUS_CODING CG31694 DOWNSTREAM CG8813	TF binding site mE1_TFBS_cad
3R	11904174	3R_11904174_DEL [dm3] 3R_16078452_DEL [dm6]	CC	C	4.626e^-5	0.567	DOWNSTREAM CG32855 INTRON Mhcl
2R	10369524	2R_10369524_SNP [dm3] 2R_14482019_SNP [dm6]	C	G	4.627e^-5	0.567	INTRON L	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3R	14536341	3R_14536341_SNP [dm3] 3R_18710619_SNP [dm6]	G	A	4.629e^-5	0.567	INTRON VAChT & 1 other
3L	6255006	3L_6255006_SNP [dm3] 3L_6261906_SNP [dm6]	G	C	4.663e^-5	0.567	UPSTREAM ImpL3 INTRON ImpL3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16011210	2L_16011210_SNP [dm3] 2L_16011210_SNP [dm6]	A	T	4.674e^-5	0.567	INTRON beat-Ic
3L	14512921	3L_14512921_SNP [dm3] 3L_14519821_SNP [dm6]	T	G	4.684e^-5	0.567	UTR_3_PRIME CG4613 INTRON bbg
3R	3497951	3R_3497951_SNP [dm3] 3R_7672229_SNP [dm6]	C	G	4.684e^-5	0.567	INTRON Nlg1
3R	18453986	3R_18453986_SNP [dm3] 3R_22628264_SNP [dm6]	C	T	4.712e^-5	0.567	UPSTREAM CR43475 INTRON loco	regulatory region REDfly_CRMs
2L	16011228	2L_16011228_SNP [dm3] 2L_16011228_SNP [dm6]	T	C	4.718e^-5	0.567	INTRON beat-Ic
3L	17136568	3L_17136568_SNP [dm3] 3L_17143468_SNP [dm6]	A	T	4.842e^-5	0.572	INTRON Rbp6
X	1151918	X_1151918_SNP [dm3] X_1257885_SNP [dm6]	G	A	4.846e^-5	0.572	INTRON Atf3
3R	3497927	3R_3497927_SNP [dm3] 3R_7672205_SNP [dm6]	A	G	4.851e^-5	0.572	INTRON Nlg1
2R	10369599	2R_10369599_SNP [dm3] 2R_14482094_SNP [dm6]	C	T	4.918e^-5	0.574	INTRON L	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2R	6562907	2R_6562907_SNP [dm3] 2R_10675402_SNP [dm6]	T	C	4.924e^-5	0.574	INTRON stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	7061390	3L_7061390_SNP [dm3] 3L_7068290_SNP [dm6]	T	G	4.954e^-5	0.574	SYNONYMOUS_CODING CG32391 DOWNSTREAM CG14823 INTRON CG8641
3L	11062628	3L_11062628_SNP [dm3] 3L_11069528_SNP [dm6]	A	G	5.042e^-5	0.58	SYNONYMOUS_CODING CG6310 UPSTREAM Mocs1 DOWNSTREAM SuUR & 1 other
2L	4809959	2L_4809959_SNP [dm3] 2L_4809959_SNP [dm6]	A	G	5.167e^-5	0.591	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	14717344	2R_14717344_INS [dm3] 2R_18829839_INS [dm6]	T	TCGA	5.335e^-5	0.607	UPSTREAM CG15082 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	13595118	2R_13595118_SNP [dm3] 2R_17707613_SNP [dm6]	T	G	5.369e^-5	0.607	SYNONYMOUS_CODING CG6424	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4809933	2L_4809933_SNP [dm3] 2L_4809933_SNP [dm6]	A	G	5.531e^-5	0.621	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	16684095	3L_16684095_SNP [dm3] 3L_16690995_SNP [dm6]	G	A	5.604e^-5	0.626	INTRON Lasp & 2 others
2R	10369644	2R_10369644_SNP [dm3] 2R_14482139_SNP [dm6]	T	C	5.681e^-5	0.631	INTRON L	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3R	13766067	3R_13766067_SNP [dm3] 3R_17940345_SNP [dm6]	A	T	5.733e^-5	0.631	INTRON cpo
2L	17272895	2L_17272895_SNP [dm3] 2L_17272895_SNP [dm6]	G	T	5.752e^-5	0.631	INTERGENIC
X	712780	X_712780_SNP [dm3] X_818747_SNP [dm6]	G	A	5.794e^-5	0.632	NON_SYNONYMOUS_CODING CG43867	TF binding site mE1_TFBS_HSA
2L	4230236	2L_4230236_SNP [dm3] 2L_4230236_SNP [dm6]	T	G	5.903e^-5	0.636	DOWNSTREAM CR44608 INTERGENIC
2R	6748815	2R_6748815_INS [dm3] 2R_10861310_INS [dm6]	T	TT	5.926e^-5	0.636	UTR_5_PRIME CG30015 INTRON CG30015	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	2574887	2R_2574887_SNP [dm3] 2R_6687382_SNP [dm6]	A	G	5.937e^-5	0.636	INTRON CG9422 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16011270	2L_16011270_SNP [dm3] 2L_16011270_SNP [dm6]	G	A	5.984e^-5	0.638	INTRON beat-Ic
3L	3653735	3L_3653735_SNP [dm3] 3L_3653735_SNP [dm6]	C	A	6.024e^-5	0.638	NON_SYNONYMOUS_CODING CG10862 DOWNSTREAM dar1
3L	14535048	3L_14535048_SNP [dm3] 3L_14541948_SNP [dm6]	T	C	6.095e^-5	0.642	UTR_3_PRIME CG9238
3L	2725129	3L_2725129_SNP [dm3] 3L_2725129_SNP [dm6]	G	A	6.239e^-5	0.654	INTRON Mrtf
3R	11900809	3R_11900809_SNP [dm3] 3R_16075087_SNP [dm6]	T	G	6.302e^-5	0.657	SYNONYMOUS_CODING Mhcl INTRON Mhcl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11230940	3L_11230940_SNP [dm3] 3L_11237840_SNP [dm6]	T	A	6.385e^-5	0.66	UPSTREAM CR44718 DOWNSTREAM CR44719 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6256631	3L_6256631_SNP [dm3] 3L_6263531_SNP [dm6]	A	G	6.407e^-5	0.66	UPSTREAM ImpL3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	22339456	2L_22339456_SNP [dm3] 2L_22339456_SNP [dm6]	G	C	6.605e^-5	0.675	INTRON CG17018	transposable element FlyBase
3L	6822509	3L_6822509_SNP [dm3] 3L_6829409_SNP [dm6]	G	C	6.634e^-5	0.675	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8445549	2R_8445549_SNP [dm3] 2R_12558044_SNP [dm6]	G	A	6.662e^-5	0.675	INTRON fra
2L	3633880	2L_3633880_SNP [dm3] 2L_3633880_SNP [dm6]	A	C	6.704e^-5	0.676	INTRON for	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7688946	3R_7688946_SNP [dm3] 3R_11863224_SNP [dm6]	C	G	6.822e^-5	0.679	INTRON CG6959	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3560408	X_3560408_SNP [dm3] X_3666375_SNP [dm6]	C	T	6.871e^-5	0.679	UTR_3_PRIME AstA-R1
2R	9315715	2R_9315715_SNP [dm3] 2R_13428210_SNP [dm6]	G	A	6.878e^-5	0.679	INTRON CG42321
2L	4185021	2L_4185021_SNP [dm3] 2L_4185021_SNP [dm6]	C	T	6.885e^-5	0.679	UPSTREAM CR44057 INTERGENIC
2L	3633884	2L_3633884_SNP [dm3] 2L_3633884_SNP [dm6]	T	C	6.912e^-5	0.679	INTRON for	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	852489	X_852489_SNP [dm3] X_958456_SNP [dm6]	T	A	6.949e^-5	0.679	INTERGENIC
3L	6255602	3L_6255602_SNP [dm3] 3L_6262502_SNP [dm6]	C	T	7.105e^-5	0.687	DOWNSTREAM CR44522 INTRON ImpL3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	19137933	2R_19137933_SNP [dm3] 2R_23250410_SNP [dm6]	G	A	7.221e^-5	0.687	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	20983275	3R_20983275_SNP [dm3] 3R_25157553_SNP [dm6]	G	A	7.276e^-5	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17169291	3L_17169291_INS [dm3] 3L_17176191_INS [dm6]	G	GGCAA	7.299e^-5	0.687	INTRON Rbp6
2R	16817114	2R_16817114_INS [dm3] 2R_20929609_INS [dm6]	G	GAGTGAGTGAGTG...	7.395e^-5	0.687	INTRON Rx
2L	10137910	2L_10137910_SNP [dm3] 2L_10137910_SNP [dm6]	T	G	7.443e^-5	0.687	INTRON CG44153
3R	16817349	3R_16817349_SNP [dm3] 3R_20991627_SNP [dm6]	G	A	7.451e^-5	0.687	UTR_5_PRIME Calx INTRON Calx
X	20364562	X_20364562_SNP [dm3] X_20493535_SNP [dm6]	A	G	7.509e^-5	0.687	INTRON RhoGAP19D
2L	19220304	2L_19220304_SNP [dm3] 2L_19220304_SNP [dm6]	G	A	7.593e^-5	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	18004448	2R_18004448_SNP [dm3] 2R_22116943_SNP [dm6]	T	A	7.598e^-5	0.687	UPSTREAM Vrp1 DOWNSTREAM CG30281 INTRON Vrp1
2R	16165308	2R_16165308_SNP [dm3] 2R_20277803_SNP [dm6]	A	G	7.663e^-5	0.687	SYNONYMOUS_CODING CG9143	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	5369928	X_5369928_SNP [dm3] X_5475895_SNP [dm6]	A	T	7.773e^-5	0.687	INTRON SPR
2L	17737024	2L_17737024_SNP [dm3] 2L_17737024_SNP [dm6]	A	G	7.787e^-5	0.687	INTRON CadN	TF binding site BDTNP1_TFBS_twi
3R	9845640	3R_9845640_SNP [dm3] 3R_14019918_SNP [dm6]	G	C	7.801e^-5	0.687	INTRON rdx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10369642	2R_10369642_SNP [dm3] 2R_14482137_SNP [dm6]	A	C	7.845e^-5	0.687	INTRON L	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2R	10369660	2R_10369660_SNP [dm3] 2R_14482155_SNP [dm6]	C	G	7.866e^-5	0.687	INTRON L	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2L	4326870	2L_4326870_SNP [dm3] 2L_4326870_SNP [dm6]	C	G	7.882e^-5	0.687	INTRON CG16857
3R	20993295	3R_20993295_INS [dm3] 3R_25167573_INS [dm6]	C	CTG	7.895e^-5	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	12536143	2L_12536143_SNP [dm3] 2L_12536143_SNP [dm6]	G	C	7.913e^-5	0.687	INTRON bun
3R	13549018	3R_13549018_SNP [dm3] 3R_17723296_SNP [dm6]	T	G	7.974e^-5	0.687	DOWNSTREAM Pxt INTERGENIC
3R	15515408	3R_15515408_SNP [dm3] 3R_19689686_SNP [dm6]	T	C	8.023e^-5	0.687	INTRON Naam
3R	15515351	3R_15515351_SNP [dm3] 3R_19689629_SNP [dm6]	T	A	8.053e^-5	0.687	INTRON Naam
2L	4782054	2L_4782054_SNP [dm3] 2L_4782054_SNP [dm6]	G	T	8.088e^-5	0.687	INTRON CG15630
3L	19045716	3L_19045716_SNP [dm3] 3L_19052616_SNP [dm6]	A	T	8.088e^-5	0.687	UPSTREAM Acp76A DOWNSTREAM CG43407 EXON CR44675
X	20367013	X_20367013_SNP [dm3] X_20495986_SNP [dm6]	T	A	8.165e^-5	0.687	INTRON RhoGAP19D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6256852	3L_6256852_SNP [dm3] 3L_6263752_SNP [dm6]	A	G	8.178e^-5	0.687	UPSTREAM CR44522 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	20364603	X_20364603_SNP [dm3] X_20493576_SNP [dm6]	A	C	8.180e^-5	0.687	INTRON RhoGAP19D
3L	6238916	3L_6238916_SNP [dm3] 3L_6245816_SNP [dm6]	C	T	8.182e^-5	0.687	UPSTREAM Mdr65 DOWNSTREAM Best2 INTERGENIC
3L	17478436	3L_17478436_SNP [dm3] 3L_17485336_SNP [dm6]	T	C	8.188e^-5	0.687	INTRON CG6333
X	16472452	X_16472452_SNP [dm3] X_16578419_SNP [dm6]	G	A	8.201e^-5	0.687	INTRON CanA-14F
3R	25668693	3R_25668693_SNP [dm3] 3R_29842971_SNP [dm6]	C	A	8.242e^-5	0.687	INTRON Cad99C
2R	13801932	2R_13801932_INS [dm3] 2R_17914427_INS [dm6]	T	TGTTGCTTT	8.272e^-5	0.687	INTRON Elk
3R	20994092	3R_20994092_SNP [dm3] 3R_25168370_SNP [dm6]	A	T	8.296e^-5	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
X	6321076	X_6321076_SNP [dm3] X_6427043_SNP [dm6]	T	G	8.319e^-5	0.687	INTRON CG42340
3R	22413729	3R_22413729_SNP [dm3] 3R_26588007_SNP [dm6]	A	G	8.319e^-5	0.687	UTR_3_PRIME scrib INTRON scrib
X	16934953	X_16934953_SNP [dm3] X_17040920_SNP [dm6]	G	A	8.387e^-5	0.69	INTRON CG45002
2R	16730217	2R_16730217_SNP [dm3] 2R_20842712_SNP [dm6]	T	G	8.456e^-5	0.69	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	15514460	3R_15514460_SNP [dm3] 3R_19688738_SNP [dm6]	C	G	8.477e^-5	0.69	INTRON Naam	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	8282277	2R_8282277_SNP [dm3] 2R_12394772_SNP [dm6]	C	A	8.502e^-5	0.69	UPSTREAM CG30048 INTRON Or49a
3L	2154690	3L_2154690_SNP [dm3] 3L_2154690_SNP [dm6]	A	C	8.633e^-5	0.692	NON_SYNONYMOUS_CODING CG15822	TF binding site mE1_TFBS_cad
2R	2558020	2R_2558020_SNP [dm3] 2R_6670515_SNP [dm6]	T	A	8.684e^-5	0.692	UTR_3_PRIME Hsepi DOWNSTREAM CG9410
2R	10369585	2R_10369585_SNP [dm3] 2R_14482080_SNP [dm6]	A	G	8.695e^-5	0.692	INTRON L	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
X	16934913	X_16934913_SNP [dm3] X_17040880_SNP [dm6]	A	G	8.719e^-5	0.692	INTRON CG45002
2R	4513102	2R_4513102_SNP [dm3] 2R_8625597_SNP [dm6]	C	A	8.810e^-5	0.692	DOWNSTREAM beta3GalTII & 1 other INTRON Vps25	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	14591165	2R_14591165_SNP [dm3] 2R_18703660_SNP [dm6]	A	G	8.846e^-5	0.692	SYNONYMOUS_CODING Sik3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8534623	2R_8534623_SNP [dm3] 2R_12647118_SNP [dm6]	T	G	8.868e^-5	0.692	INTRON CG8785
2R	10369624	2R_10369624_SNP [dm3] 2R_14482119_SNP [dm6]	T	C	8.883e^-5	0.692	INTRON L	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3L	6256245	3L_6256245_SNP [dm3] 3L_6263145_SNP [dm6]	C	T	8.956e^-5	0.692	UPSTREAM ImpL3 EXON CR44522	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	1205636	2L_1205636_DEL [dm3] 2L_1205636_DEL [dm6]	TT	T	8.972e^-5	0.692	DOWNSTREAM CG14342 INTERGENIC
X	20849921	X_20849921_SNP [dm3] X_20978894_SNP [dm6]	T	C	9.011e^-5	0.692	DOWNSTREAM CG44426 INTERGENIC
3L	11311664	3L_11311664_SNP [dm3] 3L_11318564_SNP [dm6]	G	T	9.025e^-5	0.692	INTERGENIC	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
2R	2540775	2R_2540775_SNP [dm3] 2R_6653270_SNP [dm6]	G	A	9.035e^-5	0.692	UTR_5_PRIME Opbp DOWNSTREAM debcl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3L	12080765	3L_12080765_SNP [dm3] 3L_12087665_SNP [dm6]	G	A	9.106e^-5	0.692	UPSTREAM CG17154 INTERGENIC
2L	18136814	2L_18136814_SNP [dm3] 2L_18136814_SNP [dm6]	A	G	9.157e^-5	0.692	INTRON kel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	16011284	2L_16011284_SNP [dm3] 2L_16011284_SNP [dm6]	A	G	9.167e^-5	0.692	INTRON beat-Ic
3R	3463379	3R_3463379_SNP [dm3] 3R_7637657_SNP [dm6]	T	A	9.183e^-5	0.692	INTRON CG34127
3L	6178586	3L_6178586_SNP [dm3] 3L_6185486_SNP [dm6]	A	G	9.227e^-5	0.692	NON_SYNONYMOUS_CODING CG43293 UPSTREAM D19B DOWNSTREAM D19A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5713183	3L_5713183_DEL [dm3] 3L_5720083_DEL [dm6]	AC	A	9.256e^-5	0.692	UPSTREAM snoRNA:Me18S-A1494 INTRON sif
3L	4395639	3L_4395639_DEL [dm3] 3L_4395639_DEL [dm6]	GC	G	9.327e^-5	0.692	INTRON slow
3R	15568192	3R_15568192_SNP [dm3] 3R_19742470_SNP [dm6]	G	A	9.346e^-5	0.692	INTRON GluClalpha
3L	7031069	3L_7031069_SNP [dm3] 3L_7037969_SNP [dm6]	C	T	9.357e^-5	0.692	INTRON Mp
3R	14873331	3R_14873331_SNP [dm3] 3R_19047609_SNP [dm6]	T	A	9.434e^-5	0.692	INTRON cdi	TF binding site mE1_TFBS_cad
2R	10369661	2R_10369661_SNP [dm3] 2R_14482156_SNP [dm6]	T	C	9.435e^-5	0.692	INTRON L	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
X	1615781	X_1615781_SNP [dm3] X_1721748_SNP [dm6]	C	T	9.487e^-5	0.692	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	2096916	3L_2096916_SNP [dm3] 3L_2096916_SNP [dm6]	C	T	9.503e^-5	0.692	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad
3R	13773990	3R_13773990_SNP [dm3] 3R_17948268_SNP [dm6]	C	T	9.532e^-5	0.692	INTRON cpo
2L	3937284	2L_3937284_SNP [dm3] 2L_3937284_SNP [dm6]	A	C	9.558e^-5	0.692	INTRON fred
2R	4524375	2R_4524375_SNP [dm3] 2R_8636870_SNP [dm6]	C	G	9.674e^-5	0.698	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10228312	2R_10228312_SNP [dm3] 2R_14340807_SNP [dm6]	G	A	9.774e^-5	0.701	INTRON Shroom
2L	8979618	2L_8979618_SNP [dm3] 2L_8979618_SNP [dm6]	A	G	9.790e^-5	0.701	INTRON CG13101
X	16935237	X_16935237_SNP [dm3] X_17041204_SNP [dm6]	T	A	9.837e^-5	0.702	INTRON CG45002
2R	20198699	2R_20198699_SNP [dm3] 2R_24311176_SNP [dm6]	G	A	9.981e^-5	0.706	INTRON betaTub60D	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14536349	3R_14536349_INS [dm3] 3R_18710627_INS [dm6]	A	ATACTTGA	1.001e^-4	0.706	INTRON VAChT & 1 other
3R	14285727	3R_14285727_SNP [dm3] 3R_18460005_SNP [dm6]	C	A	1.001e^-4	0.706	INTRON fru
3L	8536677	3L_8536677_SNP [dm3] 3L_8543577_SNP [dm6]	T	C	1.005e^-4	0.706	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	860232	X_860232_SNP [dm3] X_966199_SNP [dm6]	C	A	1.014e^-4	0.71	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	10724857	2L_10724857_SNP [dm3] 2L_10724857_SNP [dm6]	C	T	1.028e^-4	0.712	UPSTREAM CG6431 INTRON CG6431
X	720075	X_720075_SNP [dm3] X_826042_SNP [dm6]	T	C	1.029e^-4	0.712	INTRON CG43867
X	12930851	X_12930851_SNP [dm3] X_13036818_SNP [dm6]	G	A	1.033e^-4	0.712	INTRON rad
3R	14536428	3R_14536428_SNP [dm3] 3R_18710706_SNP [dm6]	C	A	1.037e^-4	0.712	INTRON VAChT & 1 other
3L	14549788	3L_14549788_SNP [dm3] 3L_14556688_SNP [dm6]	A	C	1.038e^-4	0.712	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16011218	2L_16011218_SNP [dm3] 2L_16011218_SNP [dm6]	G	A	1.048e^-4	0.712	INTRON beat-Ic
3R	3487150	3R_3487150_SNP [dm3] 3R_7661428_SNP [dm6]	G	T	1.048e^-4	0.712	INTRON Nlg1
2R	8445557	2R_8445557_SNP [dm3] 2R_12558052_SNP [dm6]	T	A	1.054e^-4	0.712	INTRON fra
2L	4203502	2L_4203502_SNP [dm3] 2L_4203502_SNP [dm6]	G	C	1.055e^-4	0.712	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_sens
X	12930948	X_12930948_SNP [dm3] X_13036915_SNP [dm6]	G	A	1.056e^-4	0.712	INTRON rad
3R	25596481	3R_25596481_SNP [dm3] 3R_29770759_SNP [dm6]	G	A	1.064e^-4	0.715	INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
X	54240	X_54240_SNP [dm3] X_157853_SNP [dm6]	C	T	1.073e^-4	0.718	INTRON tyn
2L	7175467	2L_7175467_SNP [dm3] 2L_7175467_SNP [dm6]	G	A	1.075e^-4	0.718	UPSTREAM CR44610 INTERGENIC
X	4422990	X_4422990_SNP [dm3] X_4528957_SNP [dm6]	T	C	1.081e^-4	0.719	INTRON CR32773
3R	13745005	3R_13745005_SNP [dm3] 3R_17919283_SNP [dm6]	C	A	1.085e^-4	0.719	UPSTREAM cpo INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	10724588	2L_10724588_SNP [dm3] 2L_10724588_SNP [dm6]	A	C	1.098e^-4	0.725	UPSTREAM CG6431 INTRON CG6431
X	20363923	X_20363923_SNP [dm3] X_20492896_SNP [dm6]	A	G	1.106e^-4	0.725	INTRON RhoGAP19D
3R	20993304	3R_20993304_SNP [dm3] 3R_25167582_SNP [dm6]	A	G	1.110e^-4	0.725	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	5196400	X_5196400_SNP [dm3] X_5302367_SNP [dm6]	T	G	1.111e^-4	0.725	DOWNSTREAM CG3323 INTRON CG42749
3R	13766144	3R_13766144_SNP [dm3] 3R_17940422_SNP [dm6]	A	G	1.128e^-4	0.725	INTRON cpo	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	8728521	3R_8728521_SNP [dm3] 3R_12902799_SNP [dm6]	T	C	1.130e^-4	0.725	INTERGENIC
3R	13766090	3R_13766090_SNP [dm3] 3R_17940368_SNP [dm6]	T	C	1.131e^-4	0.725	INTRON cpo
2L	6754193	2L_6754193_SNP [dm3] 2L_6754193_SNP [dm6]	C	T	1.133e^-4	0.725	SYNONYMOUS_CODING CG11221	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13142611	3L_13142611_SNP [dm3] 3L_13149511_SNP [dm6]	T	A	1.142e^-4	0.725	INTERGENIC
3R	25239242	3R_25239242_SNP [dm3] 3R_29413520_SNP [dm6]	C	T	1.143e^-4	0.725	INTRON Ptp99A	TF binding site BDTNP1_TFBS_twi
3L	12211965	3L_12211965_SNP [dm3] 3L_12218865_SNP [dm6]	C	A	1.148e^-4	0.725	INTRON app
2R	14717342	2R_14717342_SNP [dm3] 2R_18829837_SNP [dm6]	C	T	1.153e^-4	0.725	UPSTREAM CG15082 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25239253	3R_25239253_SNP [dm3] 3R_29413531_SNP [dm6]	C	G	1.155e^-4	0.725	INTRON Ptp99A	TF binding site BDTNP1_TFBS_twi
3L	14356590	3L_14356590_DEL [dm3] 3L_14363490_DEL [dm6]	ATGAAAGC	A	1.156e^-4	0.725	INTRON fz
3R	13548832	3R_13548832_SNP [dm3] 3R_17723110_SNP [dm6]	T	C	1.157e^-4	0.725	DOWNSTREAM Pxt INTERGENIC
3L	6255036	3L_6255036_SNP [dm3] 3L_6261936_SNP [dm6]	T	G	1.160e^-4	0.725	UPSTREAM ImpL3 INTRON ImpL3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4340835	2L_4340835_DEL [dm3] 2L_4340835_DEL [dm6]	CCCACACG	C	1.160e^-4	0.725	INTRON Atet
3R	9237975	3R_9237975_SNP [dm3] 3R_13412253_SNP [dm6]	A	G	1.171e^-4	0.726	INTRON yellow-e
3R	26061099	3R_26061099_SNP [dm3] 3R_30235377_SNP [dm6]	C	T	1.173e^-4	0.726	INTERGENIC
3L	19045468	3L_19045468_SNP [dm3] 3L_19052368_SNP [dm6]	G	A	1.174e^-4	0.726	UPSTREAM Acp76A DOWNSTREAM CG43407 EXON CR44675
2L	16011147	2L_16011147_SNP [dm3] 2L_16011147_SNP [dm6]	A	T	1.177e^-4	0.726	INTRON beat-Ic
2R	15405200	2R_15405200_SNP [dm3] 2R_19517695_SNP [dm6]	T	G	1.184e^-4	0.727	DOWNSTREAM sm INTERGENIC
3R	15515569	3R_15515569_SNP [dm3] 3R_19689847_SNP [dm6]	C	T	1.186e^-4	0.727	INTRON Naam
3R	9871719	3R_9871719_SNP [dm3] 3R_14045997_SNP [dm6]	T	A	1.197e^-4	0.731	INTERGENIC
2L	14260013	2L_14260013_SNP [dm3] 2L_14260013_SNP [dm6]	A	G	1.205e^-4	0.731	INTERGENIC
2R	6789449	2R_6789449_INS [dm3] 2R_10901944_INS [dm6]	A	AA	1.206e^-4	0.731	INTERGENIC
3L	11965641	3L_11965641_SNP [dm3] 3L_11972541_SNP [dm6]	T	A	1.218e^-4	0.731	NON_SYNONYMOUS_CODING Muc68E DOWNSTREAM CG42397	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2742021	3L_2742021_DEL [dm3] 3L_2742021_DEL [dm6]	CAC	C	1.227e^-4	0.731	INTRON Mrtf
3L	14345663	3L_14345663_SNP [dm3] 3L_14352563_SNP [dm6]	A	G	1.227e^-4	0.731	INTRON fz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25723171	3R_25723171_SNP [dm3] 3R_29897449_SNP [dm6]	T	G	1.232e^-4	0.731	NON_SYNONYMOUS_CODING CG31038	TF binding site mE1_TFBS_chinmo
2L	17729519	2L_17729519_SNP [dm3] 2L_17729519_SNP [dm6]	C	T	1.234e^-4	0.731	INTRON CadN	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	6850407	2L_6850407_SNP [dm3] 2L_6850407_SNP [dm6]	A	G	1.238e^-4	0.731	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	20993298	3R_20993298_SNP [dm3] 3R_25167576_SNP [dm6]	A	G	1.242e^-4	0.731	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	17104312	3L_17104312_SNP [dm3] 3L_17111212_SNP [dm6]	T	C	1.248e^-4	0.731	INTRON Rbp6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14873310	3R_14873310_SNP [dm3] 3R_19047588_SNP [dm6]	T	C	1.250e^-4	0.731	INTRON cdi	TF binding site mE1_TFBS_cad
2L	18628743	2L_18628743_SNP [dm3] 2L_18628743_SNP [dm6]	A	T	1.255e^-4	0.731	INTRON MESR3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	6605053	2L_6605053_SNP [dm3] 2L_6605053_SNP [dm6]	C	T	1.262e^-4	0.731	INTERGENIC
3R	14248039	3R_14248039_SNP [dm3] 3R_18422317_SNP [dm6]	C	T	1.272e^-4	0.731	SYNONYMOUS_CODING fru UTR_3_PRIME fru INTRON fru
2L	8580408	2L_8580408_SNP [dm3] 2L_8580408_SNP [dm6]	G	T	1.274e^-4	0.731	INTRON Sema-1a
2R	13532532	2R_13532532_SNP [dm3] 2R_17645027_SNP [dm6]	C	T	1.278e^-4	0.731	INTERGENIC
2L	3633865	2L_3633865_SNP [dm3] 2L_3633865_SNP [dm6]	A	G	1.283e^-4	0.731	INTRON for	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16011140	2L_16011140_SNP [dm3] 2L_16011140_SNP [dm6]	G	T	1.284e^-4	0.731	INTRON beat-Ic
2L	2947899	2L_2947899_SNP [dm3] 2L_2947899_SNP [dm6]	G	T	1.284e^-4	0.731	SYNONYMOUS_CODING lilli	TF binding site mE1_TFBS_chinmo
3L	2741239	3L_2741239_SNP [dm3] 3L_2741239_SNP [dm6]	A	C	1.284e^-4	0.731	INTRON Mrtf
3R	13772412	3R_13772412_SNP [dm3] 3R_17946690_SNP [dm6]	C	A	1.288e^-4	0.731	INTRON cpo
2L	16011108	2L_16011108_SNP [dm3] 2L_16011108_SNP [dm6]	T	G	1.290e^-4	0.731	INTRON beat-Ic
2L	4185171	2L_4185171_SNP [dm3] 2L_4185171_SNP [dm6]	C	T	1.293e^-4	0.731	UPSTREAM CR44057 INTERGENIC
2R	15782181	2R_15782181_SNP [dm3] 2R_19894676_SNP [dm6]	G	T	1.294e^-4	0.731	INTERGENIC
2L	14260068	2L_14260068_SNP [dm3] 2L_14260068_SNP [dm6]	T	A	1.300e^-4	0.731	INTERGENIC
X	6007830	X_6007830_SNP [dm3] X_6113797_SNP [dm6]	C	G	1.303e^-4	0.731	INTRON Ca-alpha1T	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15603546	2L_15603546_SNP [dm3] 2L_15603546_SNP [dm6]	A	G	1.312e^-4	0.731	INTERGENIC
X	4422932	X_4422932_SNP [dm3] X_4528899_SNP [dm6]	G	A	1.312e^-4	0.731	INTRON CR32773
X	20364652	X_20364652_SNP [dm3] X_20493625_SNP [dm6]	C	T	1.315e^-4	0.731	INTRON RhoGAP19D
3L	19045494	3L_19045494_SNP [dm3] 3L_19052394_SNP [dm6]	C	T	1.316e^-4	0.731	UPSTREAM Acp76A DOWNSTREAM CG43407 EXON CR44675
3R	11109487	3R_11109487_SNP [dm3] 3R_15283765_SNP [dm6]	C	T	1.322e^-4	0.731	INTRON Tm1
3R	26494699	3R_26494699_SNP [dm3] 3R_30668977_SNP [dm6]	G	A	1.323e^-4	0.731	INTERGENIC
3L	17104314	3L_17104314_DEL [dm3] 3L_17111214_DEL [dm6]	TATGTGG	T	1.328e^-4	0.731	INTRON Rbp6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	1152147	X_1152147_DEL [dm3] X_1258114_DEL [dm6]	CCAGCCCCAGGGGCC...	C	1.328e^-4	0.731	INTRON Atf3
3R	13768166	3R_13768166_SNP [dm3] 3R_17942444_SNP [dm6]	A	C	1.333e^-4	0.731	INTRON cpo	TF binding site mE1_TFBS_HSA
X	3482839	X_3482839_DEL [dm3] X_3588806_DEL [dm6]	TT	T	1.343e^-4	0.732	INTRON AstA-R1
3R	25239614	3R_25239614_SNP [dm3] 3R_29413892_SNP [dm6]	C	A	1.345e^-4	0.732	INTRON Ptp99A
3R	25234856	3R_25234856_SNP [dm3] 3R_29409134_SNP [dm6]	A	C	1.349e^-4	0.732	INTRON Ptp99A
X	1616364	X_1616364_SNP [dm3] X_1722331_SNP [dm6]	C	G	1.352e^-4	0.732	INTERGENIC
2L	3694828	2L_3694828_DEL [dm3] 2L_3694828_DEL [dm6]	AC	A	1.354e^-4	0.732	UTR_5_PRIME CG43165 UPSTREAM Acp24A4 & 1 other DOWNSTREAM CG16713
3R	24564924	3R_24564924_SNP [dm3] 3R_28739202_SNP [dm6]	G	T	1.360e^-4	0.732	INTRON AstA-R2
2L	4340828	2L_4340828_DEL [dm3] 2L_4340828_DEL [dm6]	TG	A	1.366e^-4	0.732	INTRON Atet
3R	12536405	3R_12536405_SNP [dm3] 3R_16710683_SNP [dm6]	A	T	1.366e^-4	0.732	INTRON Ubx
3R	15515282	3R_15515282_SNP [dm3] 3R_19689560_SNP [dm6]	A	T	1.392e^-4	0.744	INTRON Naam
X	731375	X_731375_SNP [dm3] X_837342_SNP [dm6]	G	C	1.415e^-4	0.754	UPSTREAM CG43867 INTRON CG43867
2L	16011179	2L_16011179_SNP [dm3] 2L_16011179_SNP [dm6]	T	C	1.423e^-4	0.756	INTRON beat-Ic
3L	6254972	3L_6254972_SNP [dm3] 3L_6261872_SNP [dm6]	G	A	1.427e^-4	0.756	UPSTREAM ImpL3 INTRON ImpL3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15748712	3L_15748712_SNP [dm3] 3L_15755612_SNP [dm6]	G	A	1.439e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	16011219	2L_16011219_SNP [dm3] 2L_16011219_SNP [dm6]	C	T	1.442e^-4	0.758	INTRON beat-Ic
2L	4340871	2L_4340871_SNP [dm3] 2L_4340871_SNP [dm6]	A	G	1.443e^-4	0.758	INTRON Atet
2R	18346063	2R_18346063_SNP [dm3] 2R_22458558_SNP [dm6]	C	A	1.446e^-4	0.758	INTRON CG10384
X	16437501	X_16437501_SNP [dm3] X_16543468_SNP [dm6]	G	A	1.453e^-4	0.758	UTR_3_PRIME CG9902 DOWNSTREAM CG9902
3L	8245025	3L_8245025_SNP [dm3] 3L_8251925_SNP [dm6]	G	A	1.460e^-4	0.758	INTRON Dscam4
3L	11062616	3L_11062616_SNP [dm3] 3L_11069516_SNP [dm6]	C	T	1.481e^-4	0.758	SYNONYMOUS_CODING CG6310 DOWNSTREAM SuUR & 1 other
2R	15208076	2R_15208076_SNP [dm3] 2R_19320571_SNP [dm6]	A	C	1.490e^-4	0.758	INTRON Rgk1
2R	15206882	2R_15206882_SNP [dm3] 2R_19319377_SNP [dm6]	A	G	1.490e^-4	0.758	INTRON Rgk1
3L	15748926	3L_15748926_SNP [dm3] 3L_15755826_SNP [dm6]	C	T	1.492e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11523579	3L_11523579_SNP [dm3] 3L_11530479_SNP [dm6]	C	A	1.500e^-4	0.758	INTRON Mob2
3R	18442237	3R_18442237_SNP [dm3] 3R_22616515_SNP [dm6]	C	A	1.502e^-4	0.758	UTR_5_PRIME CG31161 UTR_3_PRIME EF-G2
2L	10724842	2L_10724842_SNP [dm3] 2L_10724842_SNP [dm6]	A	C	1.503e^-4	0.758	UPSTREAM CG6431 INTRON CG6431
2R	3574779	2R_3574779_SNP [dm3] 2R_7687274_SNP [dm6]	G	T	1.505e^-4	0.758	INTRON CG1399
3L	4720066	3L_4720066_SNP [dm3] 3L_4720066_SNP [dm6]	A	G	1.508e^-4	0.758	INTRON RhoGEF64C	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	1353689	X_1353689_SNP [dm3] X_1459656_SNP [dm6]	C	G	1.510e^-4	0.758	NON_SYNONYMOUS_CODING CG14786	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4295194	3L_4295194_SNP [dm3] 3L_4295194_SNP [dm6]	T	A	1.511e^-4	0.758	SYNONYMOUS_CODING dyl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5003434	3R_5003434_DEL [dm3] 3R_9177712_DEL [dm6]	AA	A	1.517e^-4	0.758	INTRON pum & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26400965	3R_26400965_SNP [dm3] 3R_30575243_SNP [dm6]	T	A	1.522e^-4	0.758	UTR_3_PRIME tmod INTRON tmod
3L	2742890	3L_2742890_SNP [dm3] 3L_2742890_SNP [dm6]	G	A	1.527e^-4	0.758	INTRON Mrtf
3L	17487442	3L_17487442_SNP [dm3] 3L_17494342_SNP [dm6]	T	C	1.529e^-4	0.758	UPSTREAM edin INTRON Oatp74D
2R	2574649	2R_2574649_SNP [dm3] 2R_6687144_SNP [dm6]	C	T	1.530e^-4	0.758	SYNONYMOUS_CODING Tdc2 INTRON CG9422	TF binding site mE1_TFBS_cad
3L	14369806	3L_14369806_SNP [dm3] 3L_14376706_SNP [dm6]	A	T	1.530e^-4	0.758	INTERGENIC
2L	14260067	2L_14260067_SNP [dm3] 2L_14260067_SNP [dm6]	A	T	1.537e^-4	0.758	INTERGENIC
3L	16815724	3L_16815724_SNP [dm3] 3L_16822624_SNP [dm6]	C	T	1.539e^-4	0.758	INTRON CG13024	TF binding site mE1_TFBS_inv
X	13248243	X_13248243_SNP [dm3] X_13354210_SNP [dm6]	T	G	1.542e^-4	0.758	INTERGENIC
3L	10399512	3L_10399512_SNP [dm3] 3L_10406412_SNP [dm6]	A	G	1.543e^-4	0.758	INTERGENIC
2L	16340374	2L_16340374_SNP [dm3] 2L_16340374_SNP [dm6]	C	G	1.545e^-4	0.758	UPSTREAM CG42266 DOWNSTREAM CG44405 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	20982333	3R_20982333_SNP [dm3] 3R_25156611_SNP [dm6]	A	C	1.548e^-4	0.758	INTERGENIC
3L	2104524	3L_2104524_SNP [dm3] 3L_2104524_SNP [dm6]	T	C	1.568e^-4	0.763	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_chinmo
3L	22487358	3L_22487358_SNP [dm3] 3L_22494258_SNP [dm6]	G	A	1.568e^-4	0.763	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	2152355	2L_2152355_SNP [dm3] 2L_2152355_SNP [dm6]	A	G	1.573e^-4	0.763	NON_SYNONYMOUS_CODING AIF DOWNSTREAM CG7261 INTRON AIF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	6949136	2L_6949136_SNP [dm3] 2L_6949136_SNP [dm6]	T	G	1.576e^-4	0.763	UPSTREAM ihog DOWNSTREAM Gas41 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	20848642	X_20848642_SNP [dm3] X_20977615_SNP [dm6]	T	C	1.579e^-4	0.763	UPSTREAM CG44426 INTERGENIC
3R	25234939	3R_25234939_SNP [dm3] 3R_29409217_SNP [dm6]	G	C	1.594e^-4	0.769	INTRON Ptp99A
3R	19446283	3R_19446283_SNP [dm3] 3R_23620561_SNP [dm6]	G	A	1.609e^-4	0.772	INTRON CG31145
X	16144732	X_16144732_SNP [dm3] X_16250699_SNP [dm6]	A	G	1.614e^-4	0.772	INTERGENIC
3R	25093969	3R_25093969_SNP [dm3] 3R_29268247_SNP [dm6]	A	C	1.616e^-4	0.772	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2L	16011166	2L_16011166_SNP [dm3] 2L_16011166_SNP [dm6]	G	T	1.621e^-4	0.772	INTRON beat-Ic
3L	21121183	3L_21121183_SNP [dm3] 3L_21128083_SNP [dm6]	A	T	1.624e^-4	0.772	INTRON ko
2L	8186180	2L_8186180_SNP [dm3] 2L_8186180_SNP [dm6]	G	A	1.630e^-4	0.772	SYNONYMOUS_CODING Piezo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4110222	2L_4110222_SNP [dm3] 2L_4110222_SNP [dm6]	C	T	1.641e^-4	0.772	INTRON ed
3L	6239972	3L_6239972_SNP [dm3] 3L_6246872_SNP [dm6]	T	C	1.666e^-4	0.772	SYNONYMOUS_CODING Best2
3R	26494713	3R_26494713_DEL [dm3] 3R_30668991_DEL [dm6]	TC	T	1.666e^-4	0.772	INTERGENIC
2L	13865458	2L_13865458_SNP [dm3] 2L_13865458_SNP [dm6]	G	T	1.671e^-4	0.772	DOWNSTREAM CR44848 INTRON CenG1A
2R	17973685	2R_17973685_SNP [dm3] 2R_22086180_SNP [dm6]	C	T	1.673e^-4	0.772	SYNONYMOUS_CODING CG13502 DOWNSTREAM Synj
2R	19227155	2R_19227155_SNP [dm3] 2R_23339632_SNP [dm6]	C	T	1.676e^-4	0.772	INTERGENIC
X	883778	X_883778_SNP [dm3] X_989745_SNP [dm6]	A	G	1.677e^-4	0.772	UPSTREAM CG18823 INTERGENIC
3L	5713182	3L_5713182_SNP [dm3] 3L_5720082_SNP [dm6]	A	G	1.679e^-4	0.772	UPSTREAM snoRNA:Me18S-A1494 INTRON sif
X	735674	X_735674_SNP [dm3] X_841641_SNP [dm6]	C	T	1.682e^-4	0.772	UPSTREAM CG43867 INTRON CG43867	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	14388262	3L_14388262_SNP [dm3] 3L_14395162_SNP [dm6]	A	T	1.682e^-4	0.772	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	26544413	3R_26544413_SNP [dm3] 3R_30718691_SNP [dm6]	G	A	1.683e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	662085	X_662085_SNP [dm3] X_768052_SNP [dm6]	A	G	1.692e^-4	0.772	INTERGENIC
3L	14266529	3L_14266529_SNP [dm3] 3L_14273429_SNP [dm6]	A	G	1.693e^-4	0.772	UPSTREAM fz INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	13770312	3R_13770312_SNP [dm3] 3R_17944590_SNP [dm6]	C	G	1.693e^-4	0.772	INTRON cpo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	14541567	3L_14541567_SNP [dm3] 3L_14548467_SNP [dm6]	A	G	1.695e^-4	0.772	INTRON CG9238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	7892611	2R_7892611_DEL [dm3] 2R_12005106_DEL [dm6]	TATATCGAAGGGAAT...	T	1.697e^-4	0.772	INTRON otk
X	16430045	X_16430045_SNP [dm3] X_16536012_SNP [dm6]	C	G	1.697e^-4	0.772	INTERGENIC
2L	7073182	2L_7073182_DEL [dm3] 2L_7073182_DEL [dm6]	AA	G	1.700e^-4	0.772	INTRON Pvf2
3R	10816086	3R_10816086_DEL [dm3] 3R_14990364_DEL [dm6]	GGAA	G	1.703e^-4	0.772	INTERGENIC
2R	17970290	2R_17970290_SNP [dm3] 2R_22082785_SNP [dm6]	T	C	1.709e^-4	0.772	SYNONYMOUS_CODING Synj
2L	6619597	2L_6619597_SNP [dm3] 2L_6619597_SNP [dm6]	C	T	1.721e^-4	0.773	DOWNSTREAM CR44913 INTRON CG11320
X	14019854	X_14019854_SNP [dm3] X_14125821_SNP [dm6]	T	A	1.724e^-4	0.773	INTERGENIC
3L	5252588	3L_5252588_SNP [dm3] 3L_5259488_SNP [dm6]	T	C	1.726e^-4	0.773	INTRON shep
X	20935256	X_20935256_DEL [dm3] X_21064229_DEL [dm6]	GG	G	1.732e^-4	0.773	UPSTREAM CG32512 INTRON bves & 1 other
3L	18535448	3L_18535448_SNP [dm3] 3L_18542348_SNP [dm6]	G	T	1.740e^-4	0.773	INTERGENIC
2R	3672237	2R_3672237_SNP [dm3] 2R_7784732_SNP [dm6]	T	C	1.743e^-4	0.773	INTRON cn EXON CR45108
2R	16730218	2R_16730218_SNP [dm3] 2R_20842713_SNP [dm6]	G	T	1.754e^-4	0.773	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	13549034	3R_13549034_SNP [dm3] 3R_17723312_SNP [dm6]	C	T	1.762e^-4	0.773	DOWNSTREAM Pxt INTERGENIC
3R	18908894	3R_18908894_SNP [dm3] 3R_23083172_SNP [dm6]	T	C	1.763e^-4	0.773	INTRON CG13830	TF binding site mE1_TFBS_chinmo
2L	17734738	2L_17734738_SNP [dm3] 2L_17734738_SNP [dm6]	T	C	1.763e^-4	0.773	INTRON CadN	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	3492581	3R_3492581_SNP [dm3] 3R_7666859_SNP [dm6]	C	T	1.769e^-4	0.773	NON_SYNONYMOUS_CODING Nlg1
X	20367077	X_20367077_SNP [dm3] X_20496050_SNP [dm6]	G	C	1.770e^-4	0.773	INTRON RhoGAP19D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15992170	3L_15992170_SNP [dm3] 3L_15999070_SNP [dm6]	A	C	1.772e^-4	0.773	INTRON CG5830
3R	26400966	3R_26400966_SNP [dm3] 3R_30575244_SNP [dm6]	A	T	1.778e^-4	0.773	UTR_3_PRIME tmod INTRON tmod
3L	14722774	3L_14722774_SNP [dm3] 3L_14729674_SNP [dm6]	C	G	1.780e^-4	0.773	DOWNSTREAM CG13473 INTRON ome
2L	15124587	2L_15124587_SNP [dm3] 2L_15124587_SNP [dm6]	T	C	1.781e^-4	0.773	INTERGENIC
3R	25596381	3R_25596381_SNP [dm3] 3R_29770659_SNP [dm6]	G	A	1.787e^-4	0.773	INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
X	19311414	X_19311414_SNP [dm3] X_19417381_SNP [dm6]	T	C	1.792e^-4	0.773	INTRON kek5
3R	25615433	3R_25615433_SNP [dm3] 3R_29789711_SNP [dm6]	T	C	1.801e^-4	0.773	UTR_5_PRIME kay INTRON kay
3R	15515454	3R_15515454_SNP [dm3] 3R_19689732_SNP [dm6]	A	C	1.803e^-4	0.773	INTRON Naam
3R	15515572	3R_15515572_SNP [dm3] 3R_19689850_SNP [dm6]	C	T	1.806e^-4	0.773	INTRON Naam
X	6204406	X_6204406_SNP [dm3] X_6310373_SNP [dm6]	A	T	1.815e^-4	0.773	INTRON CG15894
3R	20991974	3R_20991974_SNP [dm3] 3R_25166252_SNP [dm6]	C	A	1.817e^-4	0.773	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	20849978	X_20849978_SNP [dm3] X_20978951_SNP [dm6]	T	C	1.819e^-4	0.773	DOWNSTREAM CG44426 INTERGENIC
2R	16739849	2R_16739849_SNP [dm3] 2R_20852344_SNP [dm6]	A	T	1.819e^-4	0.773	UPSTREAM CG9993 INTERGENIC	TF binding site mE1_TFBS_cad
3L	7061303	3L_7061303_SNP [dm3] 3L_7068203_SNP [dm6]	C	T	1.830e^-4	0.773	SYNONYMOUS_CODING CG14823 UTR_3_PRIME CG14823 DOWNSTREAM CG32391 INTRON CG8641
2L	4340831	2L_4340831_DEL [dm3] 2L_4340831_DEL [dm6]	AC	A	1.834e^-4	0.773	INTRON Atet
2L	4340845	2L_4340845_SNP [dm3] 2L_4340845_SNP [dm6]	T	A	1.834e^-4	0.773	INTRON Atet
3R	24401940	3R_24401940_SNP [dm3] 3R_28576218_SNP [dm6]	A	G	1.841e^-4	0.773	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	17485318	3R_17485318_SNP [dm3] 3R_21659596_SNP [dm6]	T	C	1.848e^-4	0.773	INTRON E2f	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16878410	2R_16878410_SNP [dm3] 2R_20990905_SNP [dm6]	A	G	1.850e^-4	0.773	SYNONYMOUS_CODING CG3216	TF binding site mE1_TFBS_sens
3R	25596407	3R_25596407_SNP [dm3] 3R_29770685_SNP [dm6]	T	A	1.857e^-4	0.773	INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	10137912	2L_10137912_SNP [dm3] 2L_10137912_SNP [dm6]	T	C	1.858e^-4	0.773	INTRON CG44153
3R	860746	3R_860746_SNP [dm3] 3R_5035024_SNP [dm6]	A	G	1.864e^-4	0.773	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	2743527	3L_2743527_SNP [dm3] 3L_2743527_SNP [dm6]	C	T	1.868e^-4	0.773	INTRON Mrtf
3R	13548892	3R_13548892_SNP [dm3] 3R_17723170_SNP [dm6]	T	C	1.872e^-4	0.773	DOWNSTREAM Pxt INTERGENIC
3R	25720413	3R_25720413_SNP [dm3] 3R_29894691_SNP [dm6]	A	T	1.879e^-4	0.773	UPSTREAM CG31038 INTRON CG31038	TF binding site BDTNP1_TFBS_twi
3R	15515734	3R_15515734_SNP [dm3] 3R_19690012_SNP [dm6]	T	C	1.880e^-4	0.773	INTRON Naam
3L	16685277	3L_16685277_DEL [dm3] 3L_16692177_DEL [dm6]	TTAAGTA	T	1.887e^-4	0.773	INTRON Lasp & 2 others	TF binding site mE1_TFBS_cad
2R	4513018	2R_4513018_SNP [dm3] 2R_8625513_SNP [dm6]	G	T	1.889e^-4	0.773	UTR_5_PRIME Vps25 DOWNSTREAM beta3GalTII & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	6619935	3L_6619935_SNP [dm3] 3L_6626835_SNP [dm6]	T	C	1.895e^-4	0.773	INTRON GluRIA
3R	14444489	3R_14444489_SNP [dm3] 3R_18618767_SNP [dm6]	T	C	1.904e^-4	0.773	INTRON qin & 1 other
X	16935105	X_16935105_SNP [dm3] X_17041072_SNP [dm6]	T	A	1.908e^-4	0.773	INTRON CG45002
2L	16011162	2L_16011162_SNP [dm3] 2L_16011162_SNP [dm6]	A	T	1.912e^-4	0.773	INTRON beat-Ic
2L	3633741	2L_3633741_SNP [dm3] 2L_3633741_SNP [dm6]	A	G	1.915e^-4	0.773	INTRON for	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	6178434	3L_6178434_SNP [dm3] 3L_6185334_SNP [dm6]	C	G	1.920e^-4	0.773	START_GAINED CG43293 UTR_5_PRIME CG43293 UPSTREAM D19B DOWNSTREAM D19A INTRON CG43293	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run
3R	2310614	3R_2310614_SNP [dm3] 3R_6484892_SNP [dm6]	G	A	1.933e^-4	0.773	INTRON CG15186
3L	16656882	3L_16656882_SNP [dm3] 3L_16663782_SNP [dm6]	C	T	1.936e^-4	0.773	INTRON Galphaf	TF binding site mE1_TFBS_cad
2L	8978908	2L_8978908_SNP [dm3] 2L_8978908_SNP [dm6]	A	G	1.940e^-4	0.773	NON_SYNONYMOUS_CODING CG13101
2L	16409255	2L_16409255_SNP [dm3] 2L_16409255_SNP [dm6]	C	T	1.941e^-4	0.773	INTRON CG5888
2L	7073198	2L_7073198_DEL [dm3] 2L_7073198_DEL [dm6]	AG	A	1.941e^-4	0.773	INTRON Pvf2
3L	15992172	3L_15992172_SNP [dm3] 3L_15999072_SNP [dm6]	A	C	1.941e^-4	0.773	INTRON CG5830
3R	17484750	3R_17484750_SNP [dm3] 3R_21659028_SNP [dm6]	T	C	1.941e^-4	0.773	INTRON E2f	TF binding site mE1_TFBS_sens
3L	6253803	3L_6253803_SNP [dm3] 3L_6260703_SNP [dm6]	G	A	1.949e^-4	0.773	SYNONYMOUS_CODING ImpL3
X	16934908	X_16934908_SNP [dm3] X_17040875_SNP [dm6]	T	C	1.950e^-4	0.773	INTRON CG45002
2R	8941247	2R_8941247_SNP [dm3] 2R_13053742_SNP [dm6]	C	T	1.955e^-4	0.773	INTERGENIC
3R	20959396	3R_20959396_SNP [dm3] 3R_25133674_SNP [dm6]	G	A	1.964e^-4	0.773	NON_SYNONYMOUS_CODING Bili
2R	8840215	2R_8840215_SNP [dm3] 2R_12952710_SNP [dm6]	T	A	1.977e^-4	0.773	UPSTREAM CG13321 & 2 others INTERGENIC
3R	25643196	3R_25643196_SNP [dm3] 3R_29817474_SNP [dm6]	C	T	1.979e^-4	0.773	SYNONYMOUS_CODING CG7829	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8898689	2R_8898689_SNP [dm3] 2R_13011184_SNP [dm6]	G	A	1.982e^-4	0.773	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	13549067	3R_13549067_SNP [dm3] 3R_17723345_SNP [dm6]	C	A	1.983e^-4	0.773	DOWNSTREAM Pxt INTERGENIC
3L	13231711	3L_13231711_SNP [dm3] 3L_13238611_SNP [dm6]	A	T	1.984e^-4	0.773	INTRON caps
2L	13158683	2L_13158683_SNP [dm3] 2L_13158683_SNP [dm6]	G	A	1.987e^-4	0.773	UPSTREAM Pk34A INTERGENIC	TF binding site mE1_TFBS_Kr
3R	6034843	3R_6034843_DEL [dm3] 3R_10209121_DEL [dm6]	TTACT	T	1.988e^-4	0.773	INTRON Syn & 1 other
3L	14967033	3L_14967033_MNP [dm3] 3L_14973933_MNP [dm6]	TTG	AAA	1.990e^-4	0.773	UPSTREAM Ocho DOWNSTREAM Brd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	4340852	2L_4340852_SNP [dm3] 2L_4340852_SNP [dm6]	G	A	1.990e^-4	0.773	INTRON Atet
2L	17360596	2L_17360596_SNP [dm3] 2L_17360596_SNP [dm6]	G	A	1.991e^-4	0.773	UPSTREAM CR44346 INTERGENIC
3R	18891843	3R_18891843_SNP [dm3] 3R_23066121_SNP [dm6]	G	T	1.999e^-4	0.773	INTRON CG17111
3L	11232089	3L_11232089_SNP [dm3] 3L_11238989_SNP [dm6]	A	G	2.016e^-4	0.773	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	13800534	X_13800534_SNP [dm3] X_13906501_SNP [dm6]	T	C	2.016e^-4	0.773	INTRON mamo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6016662	2L_6016662_SNP [dm3] 2L_6016662_SNP [dm6]	C	A	2.022e^-4	0.773	INTRON H2.0	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	18743839	X_18743839_SNP [dm3] X_18849806_SNP [dm6]	G	T	2.028e^-4	0.773	INTRON CG34422
3R	14536417	3R_14536417_SNP [dm3] 3R_18710695_SNP [dm6]	T	G	2.030e^-4	0.773	INTRON VAChT & 1 other
3L	14563609	3L_14563609_SNP [dm3] 3L_14570509_SNP [dm6]	C	A	2.039e^-4	0.773	INTERGENIC
2R	9410968	2R_9410968_SNP [dm3] 2R_13523463_SNP [dm6]	T	C	2.043e^-4	0.773	DOWNSTREAM CG13331 INTRON Vmat
2L	4340869	2L_4340869_SNP [dm3] 2L_4340869_SNP [dm6]	G	A	2.046e^-4	0.773	INTRON Atet
3L	13158151	3L_13158151_SNP [dm3] 3L_13165051_SNP [dm6]	G	T	2.053e^-4	0.773	INTERGENIC
X	188403	X_188403_SNP [dm3] X_294370_SNP [dm6]	A	C	2.055e^-4	0.773	INTRON CG3777 & 1 other
2R	17543863	2R_17543863_SNP [dm3] 2R_21656358_SNP [dm6]	T	C	2.057e^-4	0.773	INTRON CG10082 EXON CR43786	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13266228	3L_13266228_SNP [dm3] 3L_13273128_SNP [dm6]	A	T	2.060e^-4	0.773	INTRON caps
3R	8150885	3R_8150885_SNP [dm3] 3R_12325163_SNP [dm6]	C	T	2.064e^-4	0.773	UTR_3_PRIME CG10013
2L	16011337	2L_16011337_SNP [dm3] 2L_16011337_SNP [dm6]	T	C	2.064e^-4	0.773	INTRON beat-Ic
2R	1582076	2R_1582076_SNP [dm3] 2R_5694571_SNP [dm6]	T	C	2.069e^-4	0.773	INTERGENIC	TF binding site mE1_TFBS_kn
2R	6631950	2R_6631950_SNP [dm3] 2R_10744445_SNP [dm6]	G	A	2.070e^-4	0.773	INTRON CG33144
3L	10399309	3L_10399309_SNP [dm3] 3L_10406209_SNP [dm6]	A	T	2.071e^-4	0.773	INTERGENIC
3L	11143001	3L_11143001_SNP [dm3] 3L_11149901_SNP [dm6]	G	C	2.100e^-4	0.773	UTR_3_PRIME CG6216 INTRON CG32082
X	737784	X_737784_SNP [dm3] X_843751_SNP [dm6]	C	T	2.101e^-4	0.773	INTRON CG43867	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	10724858	2L_10724858_SNP [dm3] 2L_10724858_SNP [dm6]	T	C	2.102e^-4	0.773	UPSTREAM CG6431 INTRON CG6431
2L	16341755	2L_16341755_SNP [dm3] 2L_16341755_SNP [dm6]	G	A	2.110e^-4	0.773	SYNONYMOUS_CODING CG44405 DOWNSTREAM chif & 1 other
2R	9782579	2R_9782579_SNP [dm3] 2R_13895074_SNP [dm6]	G	A	2.111e^-4	0.773	INTRON shot
3R	21210202	3R_21210202_SNP [dm3] 3R_25384480_SNP [dm6]	G	T	2.113e^-4	0.773	SYNONYMOUS_CODING CG31437 DOWNSTREAM Fur1 INTRON Fur1
X	16934939	X_16934939_SNP [dm3] X_17040906_SNP [dm6]	A	T	2.116e^-4	0.773	INTRON CG45002
3L	11240429	3L_11240429_SNP [dm3] 3L_11247329_SNP [dm6]	T	C	2.117e^-4	0.773	UPSTREAM CR44717 & 1 other DOWNSTREAM CR44715 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	17606838	3L_17606838_SNP [dm3] 3L_17613738_SNP [dm6]	C	T	2.119e^-4	0.773	INTRON Eip74EF	TF binding site BDTNP1_TFBS_z
2R	6638647	2R_6638647_SNP [dm3] 2R_10751142_SNP [dm6]	C	T	2.125e^-4	0.773	INTRON CG33144
3L	14658543	3L_14658543_DEL [dm3] 3L_14665443_DEL [dm6]	AA	A	2.126e^-4	0.773	INTRON dlp	TF binding site mE1_TFBS_HSA
X	11656418	X_11656418_SNP [dm3] X_11762385_SNP [dm6]	T	G	2.140e^-4	0.773	INTRON m
2R	3672236	2R_3672236_SNP [dm3] 2R_7784731_SNP [dm6]	T	A	2.147e^-4	0.773	INTRON cn EXON CR45108
2R	3672244	2R_3672244_SNP [dm3] 2R_7784739_SNP [dm6]	C	A	2.147e^-4	0.773	INTRON cn EXON CR45108
3L	11233746	3L_11233746_SNP [dm3] 3L_11240646_SNP [dm6]	T	A	2.152e^-4	0.773	INTERGENIC
2L	22041444	2L_22041444_SNP [dm3] 2L_22041444_SNP [dm6]	A	G	2.156e^-4	0.773	SYNONYMOUS_CODING CG31601
3L	2104527	3L_2104527_SNP [dm3] 3L_2104527_SNP [dm6]	A	G	2.160e^-4	0.773	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_chinmo
3R	13769214	3R_13769214_SNP [dm3] 3R_17943492_SNP [dm6]	A	G	2.162e^-4	0.773	UPSTREAM cpo INTRON cpo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
X	5388395	X_5388395_SNP [dm3] X_5494362_SNP [dm6]	A	G	2.165e^-4	0.773	SYNONYMOUS_CODING frma DOWNSTREAM SPR
2R	19502955	2R_19502955_SNP [dm3] 2R_23615432_SNP [dm6]	C	T	2.165e^-4	0.773	UPSTREAM CG4019 INTRON CG17664	TF binding site mE1_TFBS_HSA
3L	10897578	3L_10897578_SNP [dm3] 3L_10904478_SNP [dm6]	G	T	2.166e^-4	0.773	INTERGENIC
2L	8186186	2L_8186186_SNP [dm3] 2L_8186186_SNP [dm6]	G	A	2.168e^-4	0.773	SYNONYMOUS_CODING Piezo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15389462	3R_15389462_SNP [dm3] 3R_19563740_SNP [dm6]	G	A	2.170e^-4	0.773	INTRON Dys
X	841643	X_841643_SNP [dm3] X_947610_SNP [dm6]	A	G	2.171e^-4	0.773	UPSTREAM CG3699 DOWNSTREAM CG3690 INTERGENIC
X	253439	X_253439_SNP [dm3] X_359406_SNP [dm6]	C	A	2.173e^-4	0.773	INTRON CG32816 & 1 other	regulatory region REDfly_CRMs
X	6007831	X_6007831_SNP [dm3] X_6113798_SNP [dm6]	A	G	2.175e^-4	0.773	INTRON Ca-alpha1T	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7060265	3L_7060265_SNP [dm3] 3L_7067165_SNP [dm6]	C	G	2.183e^-4	0.773	INTRON CG8641 & 1 other
2L	17804118	2L_17804118_SNP [dm3] 2L_17804118_SNP [dm6]	G	A	2.186e^-4	0.773	INTRON CadN2
3R	26804418	3R_26804418_SNP [dm3] 3R_30978696_SNP [dm6]	G	T	2.191e^-4	0.773	INTRON 5-HT7
3R	20014676	3R_20014676_SNP [dm3] 3R_24188954_SNP [dm6]	G	A	2.203e^-4	0.773	UPSTREAM CG5515 DOWNSTREAM jnj INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA
2R	17340182	2R_17340182_SNP [dm3] 2R_21452677_SNP [dm6]	C	T	2.203e^-4	0.773	INTRON Sdc
3L	11449948	3L_11449948_SNP [dm3] 3L_11456848_SNP [dm6]	C	T	2.205e^-4	0.773	DOWNSTREAM CG12289 INTERGENIC
3R	6033263	3R_6033263_SNP [dm3] 3R_10207541_SNP [dm6]	T	G	2.212e^-4	0.773	INTRON Syn & 1 other
3L	6212042	3L_6212042_SNP [dm3] 3L_6218942_SNP [dm6]	C	T	2.214e^-4	0.773	UPSTREAM LanA INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	15209632	2R_15209632_SNP [dm3] 2R_19322127_SNP [dm6]	T	G	2.216e^-4	0.773	INTRON Rgk1	TF binding site mE1_TFBS_inv
3L	2724420	3L_2724420_SNP [dm3] 3L_2724420_SNP [dm6]	G	T	2.219e^-4	0.773	INTRON Mrtf
2R	17959767	2R_17959767_SNP [dm3] 2R_22072262_SNP [dm6]	C	T	2.224e^-4	0.773	SYNONYMOUS_CODING CG11474 UPSTREAM CG11475	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	4423205	X_4423205_SNP [dm3] X_4529172_SNP [dm6]	T	G	2.231e^-4	0.773	INTRON CR32773
2L	17846177	2L_17846177_SNP [dm3] 2L_17846177_SNP [dm6]	G	T	2.236e^-4	0.773	INTRON CadN2
3L	2880956	3L_2880956_SNP [dm3] 3L_2880956_SNP [dm6]	A	T	2.238e^-4	0.773	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	7311054	3R_7311054_SNP [dm3] 3R_11485332_SNP [dm6]	C	T	2.273e^-4	0.773	INTERGENIC
3L	2750111	3L_2750111_SNP [dm3] 3L_2750111_SNP [dm6]	C	T	2.274e^-4	0.773	INTRON Mrtf
3R	15515125	3R_15515125_SNP [dm3] 3R_19689403_SNP [dm6]	G	T	2.275e^-4	0.773	INTRON Naam
3L	11857245	3L_11857245_SNP [dm3] 3L_11864145_SNP [dm6]	G	C	2.278e^-4	0.773	UPSTREAM CG44837 INTRON CG44837
2R	15210041	2R_15210041_SNP [dm3] 2R_19322536_SNP [dm6]	A	G	2.280e^-4	0.773	INTRON Rgk1
3L	11020291	3L_11020291_SNP [dm3] 3L_11027191_SNP [dm6]	C	T	2.286e^-4	0.773	SYNONYMOUS_CODING CG32079 UPSTREAM CG32081
2L	15124585	2L_15124585_SNP [dm3] 2L_15124585_SNP [dm6]	G	A	2.290e^-4	0.773	INTERGENIC
3L	13369230	3L_13369230_SNP [dm3] 3L_13376130_SNP [dm6]	T	C	2.291e^-4	0.773	INTERGENIC
X	253562	X_253562_SNP [dm3] X_359529_SNP [dm6]	A	G	2.295e^-4	0.773	INTRON CG32816 & 1 other	regulatory region REDfly_CRMs
3L	2492333	3L_2492333_SNP [dm3] 3L_2492333_SNP [dm6]	A	T	2.296e^-4	0.773	UTR_3_PRIME CG1146 INTRON CG45186
2L	17796484	2L_17796484_SNP [dm3] 2L_17796484_SNP [dm6]	C	T	2.297e^-4	0.773	INTRON CadN2
3R	17485123	3R_17485123_SNP [dm3] 3R_21659401_SNP [dm6]	T	C	2.298e^-4	0.773	INTRON E2f	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25420476	3R_25420476_SNP [dm3] 3R_29594754_SNP [dm6]	T	G	2.303e^-4	0.773	INTRON alph
3L	2725294	3L_2725294_SNP [dm3] 3L_2725294_SNP [dm6]	G	A	2.312e^-4	0.773	INTRON Mrtf
X	17925023	X_17925023_SNP [dm3] X_18030990_SNP [dm6]	T	C	2.312e^-4	0.773	INTRON Sh
2R	9601166	2R_9601166_SNP [dm3] 2R_13713661_SNP [dm6]	C	A	2.313e^-4	0.773	INTRON fas
3L	11045129	3L_11045129_SNP [dm3] 3L_11052029_SNP [dm6]	A	T	2.314e^-4	0.773	UPSTREAM CG43693 INTERGENIC
2L	2374388	2L_2374388_SNP [dm3] 2L_2374388_SNP [dm6]	T	C	2.317e^-4	0.773	UPSTREAM CG15390 & 1 other DOWNSTREAM CR44982 INTRON CG3609	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
3R	19446496	3R_19446496_SNP [dm3] 3R_23620774_SNP [dm6]	C	A	2.318e^-4	0.773	INTRON CG31145
3L	4395650	3L_4395650_SNP [dm3] 3L_4395650_SNP [dm6]	C	T	2.319e^-4	0.773	INTRON slow
3L	12472039	3L_12472039_SNP [dm3] 3L_12478939_SNP [dm6]	G	A	2.320e^-4	0.773	INTRON CG10663
2R	4433984	2R_4433984_SNP [dm3] 2R_8546479_SNP [dm6]	C	T	2.321e^-4	0.773	INTERGENIC
2R	4434002	2R_4434002_SNP [dm3] 2R_8546497_SNP [dm6]	G	A	2.321e^-4	0.773	INTERGENIC
3L	15048248	3L_15048248_SNP [dm3] 3L_15055148_SNP [dm6]	A	G	2.330e^-4	0.775	SYNONYMOUS_CODING CG13463 INTRON Sytbeta
2L	5608716	2L_5608716_SNP [dm3] 2L_5608716_SNP [dm6]	T	C	2.341e^-4	0.777	INTRON CG14010
2R	7827429	2R_7827429_SNP [dm3] 2R_11939924_SNP [dm6]	T	A	2.348e^-4	0.778	UTR_5_PRIME CG13188
3L	18029407	3L_18029407_SNP [dm3] 3L_18036307_SNP [dm6]	C	A	2.352e^-4	0.778	INTRON Eip75B
2R	10632645	2R_10632645_SNP [dm3] 2R_14745140_SNP [dm6]	T	G	2.373e^-4	0.782	UPSTREAM Dro INTRON CG12858
3L	19043857	3L_19043857_SNP [dm3] 3L_19050757_SNP [dm6]	G	T	2.380e^-4	0.782	UTR_3_PRIME Acp76A
2R	9601158	2R_9601158_SNP [dm3] 2R_13713653_SNP [dm6]	C	A	2.381e^-4	0.782	INTRON fas
2L	8975961	2L_8975961_SNP [dm3] 2L_8975961_SNP [dm6]	A	G	2.384e^-4	0.782	UPSTREAM CG9541 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	14873174	3R_14873174_SNP [dm3] 3R_19047452_SNP [dm6]	G	A	2.385e^-4	0.782	INTRON cdi	TF binding site mE1_TFBS_cad
2L	6929058	2L_6929058_SNP [dm3] 2L_6929058_SNP [dm6]	A	G	2.392e^-4	0.783	UTR_3_PRIME Hrb27C DOWNSTREAM Hrb27C
2L	7434301	2L_7434301_SNP [dm3] 2L_7434301_SNP [dm6]	A	T	2.399e^-4	0.783	UPSTREAM CG5958 INTERGENIC
3R	3344745	3R_3344745_SNP [dm3] 3R_7519023_SNP [dm6]	G	A	2.400e^-4	0.783	SYNONYMOUS_CODING Ubc84D DOWNSTREAM alpha-Est7
2R	17683859	2R_17683859_SNP [dm3] 2R_21796354_SNP [dm6]	T	A	2.423e^-4	0.787	UPSTREAM CG34204 INTERGENIC
2R	13972496	2R_13972496_SNP [dm3] 2R_18084991_SNP [dm6]	T	C	2.429e^-4	0.787	INTRON CG34386
X	20367020	X_20367020_SNP [dm3] X_20495993_SNP [dm6]	C	T	2.431e^-4	0.787	INTRON RhoGAP19D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17969662	2R_17969662_SNP [dm3] 2R_22082157_SNP [dm6]	T	C	2.432e^-4	0.787	SYNONYMOUS_CODING Synj	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	16011158	2L_16011158_SNP [dm3] 2L_16011158_SNP [dm6]	A	T	2.437e^-4	0.787	INTRON beat-Ic
2R	10716233	2R_10716233_SNP [dm3] 2R_14828728_SNP [dm6]	T	A	2.440e^-4	0.787	INTERGENIC	TF binding site mE1_TFBS_sens
2L	16183031	2L_16183031_SNP [dm3] 2L_16183031_SNP [dm6]	C	T	2.443e^-4	0.787	SYNONYMOUS_CODING Ca-alpha1D
3L	6250335	3L_6250335_SNP [dm3] 3L_6257235_SNP [dm6]	C	T	2.445e^-4	0.787	UPSTREAM Best2 DOWNSTREAM CG10163 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	13766125	3R_13766125_SNP [dm3] 3R_17940403_SNP [dm6]	G	T	2.460e^-4	0.789	INTRON cpo
2R	8541771	2R_8541771_SNP [dm3] 2R_12654266_SNP [dm6]	C	T	2.465e^-4	0.789	INTRON ZnT49B
2R	8541793	2R_8541793_SNP [dm3] 2R_12654288_SNP [dm6]	G	C	2.465e^-4	0.789	INTRON ZnT49B
2L	10724762	2L_10724762_SNP [dm3] 2L_10724762_SNP [dm6]	T	C	2.473e^-4	0.79	UPSTREAM CG6431 INTRON CG6431
3R	9112523	3R_9112523_SNP [dm3] 3R_13286801_SNP [dm6]	A	G	2.482e^-4	0.791	UPSTREAM CG15888 DOWNSTREAM CG15887 INTERGENIC	TF binding site mE1_TFBS_cad
3L	21170513	3L_21170513_SNP [dm3] 3L_21177413_SNP [dm6]	G	T	2.488e^-4	0.791	UPSTREAM chb INTRON chb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	15408884	2L_15408884_SNP [dm3] 2L_15408884_SNP [dm6]	A	T	2.488e^-4	0.791	INTERGENIC
2L	13865560	2L_13865560_DEL [dm3] 2L_13865560_DEL [dm6]	TT	T	2.493e^-4	0.791	DOWNSTREAM CR44848 INTRON CenG1A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
3R	9532942	3R_9532942_SNP [dm3] 3R_13707220_SNP [dm6]	C	A	2.509e^-4	0.792	INTRON Adgf-C
2R	11648109	2R_11648109_SNP [dm3] 2R_15760604_SNP [dm6]	C	T	2.511e^-4	0.792	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	691628	X_691628_SNP [dm3] X_797595_SNP [dm6]	G	A	2.518e^-4	0.792	NON_SYNONYMOUS_CODING Rbf DOWNSTREAM CG16989	TF binding site BDTNP1_TFBS_dl
3L	13290021	3L_13290021_SNP [dm3] 3L_13296921_SNP [dm6]	T	C	2.520e^-4	0.792	UPSTREAM CR45253 & 1 other DOWNSTREAM CR45255 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16011157	2L_16011157_SNP [dm3] 2L_16011157_SNP [dm6]	C	G	2.528e^-4	0.792	INTRON beat-Ic
3R	8705956	3R_8705956_SNP [dm3] 3R_12880234_SNP [dm6]	G	C	2.533e^-4	0.792	INTERGENIC
3L	11952861	3L_11952861_SNP [dm3] 3L_11959761_SNP [dm6]	G	A	2.535e^-4	0.792	SYNONYMOUS_CODING prc DOWNSTREAM CG43294
X	242883	X_242883_SNP [dm3] X_348850_SNP [dm6]	G	C	2.538e^-4	0.792	NON_SYNONYMOUS_CODING CG3777 INTRON CG32816	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	248247	X_248247_SNP [dm3] X_354214_SNP [dm6]	A	C	2.538e^-4	0.792	DOWNSTREAM CG43182 INTRON CG32816	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_cad
X	3897467	X_3897467_SNP [dm3] X_4003434_SNP [dm6]	C	T	2.543e^-4	0.792	INTERGENIC
3R	15513071	3R_15513071_SNP [dm3] 3R_19687349_SNP [dm6]	T	C	2.547e^-4	0.792	INTRON Naam
3R	7313812	3R_7313812_SNP [dm3] 3R_11488090_SNP [dm6]	G	T	2.551e^-4	0.792	DOWNSTREAM CR45581 INTERGENIC
3R	24667244	3R_24667244_SNP [dm3] 3R_28841522_SNP [dm6]	A	C	2.552e^-4	0.792	INTRON Apc	TF binding site BDTNP1_TFBS_twi
2L	9153422	2L_9153422_SNP [dm3] 2L_9153422_SNP [dm6]	C	T	2.566e^-4	0.793	INTRON CG32982
3R	20013250	3R_20013250_SNP [dm3] 3R_24187528_SNP [dm6]	A	C	2.575e^-4	0.793	NON_SYNONYMOUS_CODING CHORD DOWNSTREAM CG5515	TF binding site mE1_TFBS_sens
2L	10170259	2L_10170259_SNP [dm3] 2L_10170259_SNP [dm6]	T	A	2.575e^-4	0.793	INTRON CG44153
2R	17959625	2R_17959625_SNP [dm3] 2R_22072120_SNP [dm6]	A	G	2.576e^-4	0.793	SYNONYMOUS_CODING CG11474 UPSTREAM CG11475	TF binding site mE1_TFBS_HSA
2L	19267574	2L_19267574_SNP [dm3] 2L_19267574_SNP [dm6]	A	G	2.577e^-4	0.793	INTERGENIC
3R	24611011	3R_24611011_SNP [dm3] 3R_28785289_SNP [dm6]	C	T	2.587e^-4	0.793	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	15613041	3R_15613041_SNP [dm3] 3R_19787319_SNP [dm6]	A	G	2.588e^-4	0.793	INTERGENIC
3R	20988399	3R_20988399_SNP [dm3] 3R_25162677_SNP [dm6]	G	A	2.592e^-4	0.793	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12516171	3R_12516171_SNP [dm3] 3R_16690449_SNP [dm6]	G	T	2.593e^-4	0.793	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	10724827	2L_10724827_DEL [dm3] 2L_10724827_DEL [dm6]	CAGATTAAC	C	2.608e^-4	0.795	UPSTREAM CG6431 INTRON CG6431
2L	8781463	2L_8781463_SNP [dm3] 2L_8781463_SNP [dm6]	A	G	2.610e^-4	0.795	UPSTREAM CG9468 DOWNSTREAM CG42710 INTERGENIC
3L	528913	3L_528913_SNP [dm3] 3L_528913_SNP [dm6]	C	A	2.611e^-4	0.795	SYNONYMOUS_CODING CG34269 DOWNSTREAM CR45117 INTRON klar	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20993447	3R_20993447_SNP [dm3] 3R_25167725_SNP [dm6]	T	C	2.630e^-4	0.8	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	8186153	2L_8186153_SNP [dm3] 2L_8186153_SNP [dm6]	C	T	2.641e^-4	0.8	SYNONYMOUS_CODING Piezo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9601165	2R_9601165_SNP [dm3] 2R_13713660_SNP [dm6]	A	C	2.641e^-4	0.8	INTRON fas
3L	11062606	3L_11062606_SNP [dm3] 3L_11069506_SNP [dm6]	G	T	2.645e^-4	0.8	SYNONYMOUS_CODING CG6310 DOWNSTREAM SuUR & 1 other
3R	12251391	3R_12251391_SNP [dm3] 3R_16425669_SNP [dm6]	A	G	2.664e^-4	0.803	UPSTREAM tRNA:CR31497 INTERGENIC	regulatory region REDfly_CRMs
X	19194814	X_19194814_SNP [dm3] X_19300781_SNP [dm6]	C	T	2.665e^-4	0.803	DOWNSTREAM CG8051 & 1 other INTERGENIC
3L	11231086	3L_11231086_SNP [dm3] 3L_11237986_SNP [dm6]	A	T	2.668e^-4	0.803	UPSTREAM CR44718 DOWNSTREAM CR44719 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4710289	3L_4710289_SNP [dm3] 3L_4710289_SNP [dm6]	C	T	2.672e^-4	0.803	UPSTREAM CG13712 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8047021	2L_8047021_SNP [dm3] 2L_8047021_SNP [dm6]	C	A	2.679e^-4	0.804	SYNONYMOUS_CODING CG7466
3L	6242445	3L_6242445_SNP [dm3] 3L_6249345_SNP [dm6]	T	C	2.686e^-4	0.804	INTRON Best2
2L	8186184	2L_8186184_SNP [dm3] 2L_8186184_SNP [dm6]	T	C	2.690e^-4	0.804	SYNONYMOUS_CODING Piezo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9555850	3L_9555850_SNP [dm3] 3L_9562750_SNP [dm6]	G	A	2.692e^-4	0.804	INTRON CG42673
2L	4732487	2L_4732487_SNP [dm3] 2L_4732487_SNP [dm6]	A	T	2.701e^-4	0.805	UTR_3_PRIME CG15631	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10494711	2L_10494711_SNP [dm3] 2L_10494711_SNP [dm6]	T	C	2.710e^-4	0.805	SYNONYMOUS_CODING Myo31DF
X	828827	X_828827_SNP [dm3] X_934794_SNP [dm6]	G	A	2.718e^-4	0.805	UPSTREAM TRAM INTRON CG32815	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	166229	X_166229_INS [dm3] X_272196_INS [dm6]	T	TT	2.723e^-4	0.805	INTRON ewg
3R	15613115	3R_15613115_SNP [dm3] 3R_19787393_SNP [dm6]	A	C	2.727e^-4	0.805	INTERGENIC
3R	13769901	3R_13769901_SNP [dm3] 3R_17944179_SNP [dm6]	T	A	2.730e^-4	0.805	UTR_5_PRIME cpo INTRON cpo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14717367	2R_14717367_SNP [dm3] 2R_18829862_SNP [dm6]	T	A	2.731e^-4	0.805	UPSTREAM CG15082 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17973664	2R_17973664_SNP [dm3] 2R_22086159_SNP [dm6]	C	G	2.732e^-4	0.805	SYNONYMOUS_CODING CG13502 DOWNSTREAM Synj
3L	6242734	3L_6242734_SNP [dm3] 3L_6249634_SNP [dm6]	A	C	2.733e^-4	0.805	INTRON Best2
2L	7020207	2L_7020207_SNP [dm3] 2L_7020207_SNP [dm6]	G	A	2.750e^-4	0.808	INTRON ade3
2R	10144429	2R_10144429_SNP [dm3] 2R_14256924_SNP [dm6]	T	G	2.766e^-4	0.812	SYNONYMOUS_CODING CG8531 UPSTREAM Hsc70-5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2R	3781447	2R_3781447_SNP [dm3] 2R_7893942_SNP [dm6]	C	T	2.769e^-4	0.812	INTRON CG30377	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12260496	3L_12260496_INS [dm3] 3L_12267396_INS [dm6]	C	CC	2.778e^-4	0.812	UPSTREAM CG32100 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	16702726	2R_16702726_SNP [dm3] 2R_20815221_SNP [dm6]	C	T	2.786e^-4	0.812	INTERGENIC
2L	13326271	2L_13326271_SNP [dm3] 2L_13326271_SNP [dm6]	G	C	2.786e^-4	0.812	INTRON CG43778
3L	13600633	3L_13600633_SNP [dm3] 3L_13607533_SNP [dm6]	G	T	2.790e^-4	0.812	INTRON bru-3
3R	12251427	3R_12251427_SNP [dm3] 3R_16425705_SNP [dm6]	C	G	2.795e^-4	0.812	UPSTREAM tRNA:CR31497 INTERGENIC	regulatory region REDfly_CRMs
3R	20985550	3R_20985550_SNP [dm3] 3R_25159828_SNP [dm6]	G	A	2.800e^-4	0.812	INTERGENIC
2L	6922865	2L_6922865_SNP [dm3] 2L_6922865_SNP [dm6]	T	C	2.803e^-4	0.812	INTRON Hrb27C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	19364859	3R_19364859_SNP [dm3] 3R_23539137_SNP [dm6]	T	G	2.804e^-4	0.812	UPSTREAM CG10168 INTERGENIC
3R	13971898	3R_13971898_SNP [dm3] 3R_18146176_SNP [dm6]	A	T	2.808e^-4	0.812	INTERGENIC
2R	5623162	2R_5623162_SNP [dm3] 2R_9735657_SNP [dm6]	C	T	2.827e^-4	0.816	INTRON sqa
3L	8885363	3L_8885363_SNP [dm3] 3L_8892263_SNP [dm6]	C	T	2.836e^-4	0.816	INTRON Mcm7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	11062603	3L_11062603_SNP [dm3] 3L_11069503_SNP [dm6]	G	A	2.838e^-4	0.816	SYNONYMOUS_CODING CG6310 DOWNSTREAM SuUR & 1 other
2L	9929652	2L_9929652_SNP [dm3] 2L_9929652_SNP [dm6]	G	A	2.841e^-4	0.816	UPSTREAM CG42367 INTRON CG42366	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13600553	3L_13600553_SNP [dm3] 3L_13607453_SNP [dm6]	T	G	2.851e^-4	0.817	INTRON bru-3
2R	16165317	2R_16165317_SNP [dm3] 2R_20277812_SNP [dm6]	T	C	2.863e^-4	0.817	SYNONYMOUS_CODING CG9143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	15748713	3L_15748713_SNP [dm3] 3L_15755613_SNP [dm6]	T	G	2.872e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	1152386	X_1152386_SNP [dm3] X_1258353_SNP [dm6]	C	T	2.874e^-4	0.817	INTRON Atf3
3L	13397136	3L_13397136_INS [dm3] 3L_13404036_INS [dm6]	C	TT	2.877e^-4	0.817	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10502050	3L_10502050_INS [dm3] 3L_10508950_INS [dm6]	G	GG	2.879e^-4	0.817	INTRON A2bp1
X	5575926	X_5575926_SNP [dm3] X_5681893_SNP [dm6]	C	T	2.883e^-4	0.817	SYNONYMOUS_CODING Gr5a EXON CR44958	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	13600565	3L_13600565_SNP [dm3] 3L_13607465_SNP [dm6]	A	G	2.888e^-4	0.817	INTRON bru-3
3L	16873823	3L_16873823_SNP [dm3] 3L_16880723_SNP [dm6]	T	C	2.893e^-4	0.817	INTRON Lmpt
2R	14717341	2R_14717341_SNP [dm3] 2R_18829836_SNP [dm6]	G	T	2.898e^-4	0.817	UPSTREAM CG15082 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17974228	2R_17974228_SNP [dm3] 2R_22086723_SNP [dm6]	G	A	2.913e^-4	0.817	DOWNSTREAM Synj INTRON CG13502
2L	4189053	2L_4189053_SNP [dm3] 2L_4189053_SNP [dm6]	C	T	2.926e^-4	0.817	SYNONYMOUS_CODING lectin-24Db DOWNSTREAM CG3714	TF binding site mE1_TFBS_inv
3R	8641216	3R_8641216_SNP [dm3] 3R_12815494_SNP [dm6]	G	A	2.929e^-4	0.817	INTRON CG31345
X	689156	X_689156_SNP [dm3] X_795123_SNP [dm6]	A	G	2.933e^-4	0.817	SYNONYMOUS_CODING CG16989	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	22813954	3R_22813954_SNP [dm3] 3R_26988232_SNP [dm6]	T	C	2.936e^-4	0.817	UPSTREAM CG31075 DOWNSTREAM CG31076 INTRON CG31075
3R	15515353	3R_15515353_DEL [dm3] 3R_19689631_DEL [dm6]	TTTT	C	2.938e^-4	0.817	INTRON Naam
X	17348012	X_17348012_SNP [dm3] X_17453979_SNP [dm6]	T	G	2.941e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8841304	3R_8841304_SNP [dm3] 3R_13015582_SNP [dm6]	A	C	2.944e^-4	0.817	INTRON CtBP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16910094	X_16910094_SNP [dm3] X_17016061_SNP [dm6]	A	T	2.950e^-4	0.817	INTRON CG45002
3R	902690	3R_902690_SNP [dm3] 3R_5076968_SNP [dm6]	G	A	2.965e^-4	0.817	DOWNSTREAM corto INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2L	4185118	2L_4185118_SNP [dm3] 2L_4185118_SNP [dm6]	T	G	2.967e^-4	0.817	UPSTREAM CR44057 INTERGENIC
3R	13549070	3R_13549070_SNP [dm3] 3R_17723348_SNP [dm6]	C	T	2.968e^-4	0.817	DOWNSTREAM Pxt INTERGENIC
3R	10314913	3R_10314913_SNP [dm3] 3R_14489191_SNP [dm6]	A	G	2.968e^-4	0.817	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	14150313	2L_14150313_SNP [dm3] 2L_14150313_SNP [dm6]	T	C	2.974e^-4	0.817	INTRON CG17341
2L	19211646	2L_19211646_SNP [dm3] 2L_19211646_SNP [dm6]	A	C	2.980e^-4	0.817	INTERGENIC
3R	26872921	3R_26872921_SNP [dm3] 3R_31047199_SNP [dm6]	T	C	2.983e^-4	0.817	DOWNSTREAM CanA1 INTERGENIC
2L	13143726	2L_13143726_SNP [dm3] 2L_13143726_SNP [dm6]	A	C	2.987e^-4	0.817	UPSTREAM CG9928 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7440872	2L_7440872_SNP [dm3] 2L_7440872_SNP [dm6]	C	T	3.001e^-4	0.817	START_GAINED CG5973 UTR_5_PRIME CG5973 INTRON CG5973
X	14632942	X_14632942_SNP [dm3] X_14738909_SNP [dm6]	T	A	3.011e^-4	0.817	INTRON NetB
2R	16377828	2R_16377828_SNP [dm3] 2R_20490323_SNP [dm6]	A	G	3.015e^-4	0.817	DOWNSTREAM CR44643 INTERGENIC
3L	16784661	3L_16784661_SNP [dm3] 3L_16791561_SNP [dm6]	A	C	3.016e^-4	0.817	INTRON CG9674
X	20849696	X_20849696_SNP [dm3] X_20978669_SNP [dm6]	C	G	3.024e^-4	0.817	UTR_3_PRIME CG44426
3L	8076239	3L_8076239_SNP [dm3] 3L_8083139_SNP [dm6]	C	G	3.039e^-4	0.817	INTRON Ect4 EXON CR43974	TF binding site mE1_TFBS_cad
X	9585802	X_9585802_SNP [dm3] X_9691769_SNP [dm6]	C	T	3.046e^-4	0.817	EXON CR44016	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
2L	8980027	2L_8980027_SNP [dm3] 2L_8980027_SNP [dm6]	C	G	3.050e^-4	0.817	UPSTREAM CG18662 INTRON CG13101
2R	2093899	2R_2093899_SNP [dm3] 2R_6206394_SNP [dm6]	G	C	3.053e^-4	0.817	DOWNSTREAM CG17994 INTERGENIC
2L	6128408	2L_6128408_SNP [dm3] 2L_6128408_SNP [dm6]	G	C	3.054e^-4	0.817	NON_SYNONYMOUS_CODING tectonic UTR_3_PRIME CG42730 UPSTREAM WDR79	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6118157	3L_6118157_SNP [dm3] 3L_6125057_SNP [dm6]	T	C	3.069e^-4	0.817	INTRON l_3_mbn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
2R	6644723	2R_6644723_SNP [dm3] 2R_10757218_SNP [dm6]	T	A	3.076e^-4	0.817	NON_SYNONYMOUS_CODING CG33144	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	17166704	3L_17166704_SNP [dm3] 3L_17173604_SNP [dm6]	T	G	3.078e^-4	0.817	INTRON Rbp6
3R	7313813	3R_7313813_SNP [dm3] 3R_11488091_SNP [dm6]	C	G	3.083e^-4	0.817	DOWNSTREAM CR45581 INTERGENIC
X	16910082	X_16910082_SNP [dm3] X_17016049_SNP [dm6]	A	G	3.083e^-4	0.817	INTRON CG45002
2R	2427805	2R_2427805_SNP [dm3] 2R_6540300_SNP [dm6]	A	T	3.087e^-4	0.817	INTRON jing
3R	5018296	3R_5018296_SNP [dm3] 3R_9192574_SNP [dm6]	C	G	3.088e^-4	0.817	INTRON pum
X	7861605	X_7861605_SNP [dm3] X_7967572_SNP [dm6]	G	A	3.090e^-4	0.817	UTR_5_PRIME sws INTRON sn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	26494967	3R_26494967_SNP [dm3] 3R_30669245_SNP [dm6]	T	A	3.102e^-4	0.817	INTERGENIC
3L	6256771	3L_6256771_SNP [dm3] 3L_6263671_SNP [dm6]	A	T	3.113e^-4	0.817	UPSTREAM ImpL3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4340368	2L_4340368_SNP [dm3] 2L_4340368_SNP [dm6]	C	T	3.114e^-4	0.817	INTRON Atet
3L	13133943	3L_13133943_SNP [dm3] 3L_13140843_SNP [dm6]	C	T	3.115e^-4	0.817	INTERGENIC
3R	25420470	3R_25420470_SNP [dm3] 3R_29594748_SNP [dm6]	G	A	3.116e^-4	0.817	INTRON alph
2R	17780750	2R_17780750_SNP [dm3] 2R_21893245_SNP [dm6]	C	T	3.122e^-4	0.817	INTRON Fili
X	13352512	X_13352512_SNP [dm3] X_13458479_SNP [dm6]	C	A	3.122e^-4	0.817	UPSTREAM CG34324 INTRON Neto
X	21042756	X_21042756_DEL [dm3] X_21171729_DEL [dm6]	TTAAAAC	T	3.124e^-4	0.817	INTERGENIC	transposable element FlyBase
3R	21065550	3R_21065550_SNP [dm3] 3R_25239828_SNP [dm6]	A	C	3.131e^-4	0.817	UPSTREAM to DOWNSTREAM CG11852 INTERGENIC
2L	8989254	2L_8989254_SNP [dm3] 2L_8989254_SNP [dm6]	G	A	3.138e^-4	0.817	UTR_5_PRIME rost UPSTREAM rost INTRON rost
3R	8839539	3R_8839539_DEL [dm3] 3R_13013817_DEL [dm6]	CAAC	C	3.140e^-4	0.817	INTRON CtBP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15290312	2R_15290312_SNP [dm3] 2R_19402807_SNP [dm6]	C	A	3.142e^-4	0.817	SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	13224197	X_13224197_INS [dm3] X_13330164_INS [dm6]	T	TCT	3.142e^-4	0.817	UPSTREAM Jafrac1 DOWNSTREAM IP3K2 INTRON Jafrac1
2L	5450228	2L_5450228_SNP [dm3] 2L_5450228_SNP [dm6]	C	A	3.145e^-4	0.817	INTERGENIC
3L	5120816	3L_5120816_SNP [dm3] 3L_5127716_SNP [dm6]	A	G	3.147e^-4	0.817	INTERGENIC
3L	761714	3L_761714_SNP [dm3] 3L_761714_SNP [dm6]	C	T	3.154e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	4789427	2R_4789427_SNP [dm3] 2R_8901922_SNP [dm6]	C	A	3.156e^-4	0.817	UPSTREAM MrgBP INTRON Ggamma1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	4789453	2R_4789453_SNP [dm3] 2R_8901948_SNP [dm6]	C	T	3.156e^-4	0.817	UPSTREAM MrgBP INTRON Ggamma1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	13549014	3R_13549014_SNP [dm3] 3R_17723292_SNP [dm6]	G	T	3.159e^-4	0.817	DOWNSTREAM Pxt INTERGENIC
2L	10478166	2L_10478166_SNP [dm3] 2L_10478166_SNP [dm6]	C	A	3.159e^-4	0.817	INTRON RluA-2
2R	6873529	2R_6873529_SNP [dm3] 2R_10986024_SNP [dm6]	C	T	3.164e^-4	0.817	INTRON luna
3L	3973146	3L_3973146_SNP [dm3] 3L_3973146_SNP [dm6]	G	A	3.168e^-4	0.817	SYNONYMOUS_CODING CG43915	regulatory region REDfly_CRMs
3R	22832029	3R_22832029_SNP [dm3] 3R_27006307_SNP [dm6]	G	A	3.169e^-4	0.817	SYNONYMOUS_CODING CG6295 UPSTREAM CG6296 INTRON RYa-R	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4230492	2L_4230492_SNP [dm3] 2L_4230492_SNP [dm6]	G	A	3.175e^-4	0.817	INTERGENIC
2R	6006089	2R_6006089_DEL [dm3] 2R_10118584_DEL [dm6]	CT	C	3.179e^-4	0.817	INTRON dmpd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	14266528	3L_14266528_SNP [dm3] 3L_14273428_SNP [dm6]	T	C	3.182e^-4	0.817	UPSTREAM fz INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	6242795	3L_6242795_SNP [dm3] 3L_6249695_SNP [dm6]	G	T	3.211e^-4	0.817	INTRON Best2
2R	17958933	2R_17958933_SNP [dm3] 2R_22071428_SNP [dm6]	T	G	3.216e^-4	0.817	UTR_3_PRIME CG11474 UPSTREAM CG11475
2L	16011260	2L_16011260_SNP [dm3] 2L_16011260_SNP [dm6]	T	G	3.224e^-4	0.817	INTRON beat-Ic
2L	8182091	2L_8182091_SNP [dm3] 2L_8182091_SNP [dm6]	A	T	3.226e^-4	0.817	DOWNSTREAM Piezo INTRON Piezo
2R	10938084	2R_10938084_SNP [dm3] 2R_15050579_SNP [dm6]	C	G	3.229e^-4	0.817	UPSTREAM CR43622 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_inv
2R	4786813	2R_4786813_SNP [dm3] 2R_8899308_SNP [dm6]	T	C	3.231e^-4	0.817	SYNONYMOUS_CODING ana2 UPSTREAM CG13751 DOWNSTREAM Sec31	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	15516223	3R_15516223_SNP [dm3] 3R_19690501_SNP [dm6]	A	C	3.232e^-4	0.817	INTRON Naam
2R	15209666	2R_15209666_SNP [dm3] 2R_19322161_SNP [dm6]	T	A	3.234e^-4	0.817	INTRON Rgk1	TF binding site mE1_TFBS_inv
3R	26978182	3R_26978182_SNP [dm3] 3R_31152460_SNP [dm6]	A	G	3.237e^-4	0.817	SYNONYMOUS_CODING Gycbeta100B
X	8298981	X_8298981_SNP [dm3] X_8404948_SNP [dm6]	C	G	3.239e^-4	0.817	NON_SYNONYMOUS_CODING CG11190 DOWNSTREAM CG10555	TF binding site mE1_TFBS_cad
3L	6242764	3L_6242764_SNP [dm3] 3L_6249664_SNP [dm6]	C	G	3.240e^-4	0.817	INTRON Best2
3L	13600615	3L_13600615_SNP [dm3] 3L_13607515_SNP [dm6]	T	C	3.252e^-4	0.817	INTRON bru-3
3R	13548876	3R_13548876_SNP [dm3] 3R_17723154_SNP [dm6]	T	A	3.254e^-4	0.817	DOWNSTREAM Pxt INTERGENIC
2L	13439574	2L_13439574_INS [dm3] 2L_13439574_INS [dm6]	A	AA	3.256e^-4	0.817	UTR_3_PRIME Tehao DOWNSTREAM Tehao INTRON CG42784 EXON CR45683
X	14387856	X_14387856_SNP [dm3] X_14493823_SNP [dm6]	G	T	3.258e^-4	0.817	INTERGENIC
2L	2400110	2L_2400110_SNP [dm3] 2L_2400110_SNP [dm6]	A	G	3.263e^-4	0.817	UPSTREAM VGlut INTRON VGlut
2R	3577379	2R_3577379_SNP [dm3] 2R_7689874_SNP [dm6]	C	A	3.263e^-4	0.817	INTRON CG1399
2L	14260021	2L_14260021_SNP [dm3] 2L_14260021_SNP [dm6]	C	T	3.269e^-4	0.817	INTERGENIC
3R	15512507	3R_15512507_SNP [dm3] 3R_19686785_SNP [dm6]	G	A	3.276e^-4	0.817	UPSTREAM Naam INTRON Naam
X	806544	X_806544_SNP [dm3] X_912511_SNP [dm6]	C	A	3.287e^-4	0.817	INTRON CG43867	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3L	13286168	3L_13286168_SNP [dm3] 3L_13293068_SNP [dm6]	T	A	3.290e^-4	0.817	INTERGENIC
3L	16998474	3L_16998474_SNP [dm3] 3L_17005374_SNP [dm6]	G	A	3.296e^-4	0.817	INTRON CG3764
3R	26400641	3R_26400641_SNP [dm3] 3R_30574919_SNP [dm6]	G	T	3.299e^-4	0.817	UTR_3_PRIME tmod INTRON tmod
X	833756	X_833756_SNP [dm3] X_939723_SNP [dm6]	C	T	3.300e^-4	0.817	DOWNSTREAM CG32815 INTRON CG3704
2L	2098076	2L_2098076_DEL [dm3] 2L_2098076_DEL [dm6]	GAGGCGAAATAGC...	G	3.306e^-4	0.817	INTRON dpr3
X	20449365	X_20449365_SNP [dm3] X_20578338_SNP [dm6]	A	C	3.310e^-4	0.817	INTERGENIC
X	5076208	X_5076208_SNP [dm3] X_5182175_SNP [dm6]	T	C	3.314e^-4	0.817	SYNONYMOUS_CODING CG5062 INTRON rg & 1 other
X	21042322	X_21042322_SNP [dm3] X_21171295_SNP [dm6]	A	T	3.319e^-4	0.817	INTERGENIC	transposable element FlyBase
3R	20994237	3R_20994237_SNP [dm3] 3R_25168515_SNP [dm6]	G	C	3.325e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3L	5276692	3L_5276692_SNP [dm3] 3L_5283592_SNP [dm6]	C	A	3.330e^-4	0.817	INTERGENIC
2R	13290076	2R_13290076_SNP [dm3] 2R_17402571_SNP [dm6]	A	G	3.336e^-4	0.817	INTRON Sip1
2R	2499539	2R_2499539_SNP [dm3] 2R_6612034_SNP [dm6]	C	T	3.337e^-4	0.817	INTRON jing	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	2780909	3L_2780909_SNP [dm3] 3L_2780909_SNP [dm6]	C	G	3.337e^-4	0.817	UTR_5_PRIME mRpS35 DOWNSTREAM Atg2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_ttk
3L	6175478	3L_6175478_INS [dm3] 3L_6182378_INS [dm6]	C	CGTAGACAGGC...	3.338e^-4	0.817	UTR_3_PRIME D19B UPSTREAM CG10274	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_run
3L	7125745	3L_7125745_SNP [dm3] 3L_7132645_SNP [dm6]	A	T	3.338e^-4	0.817	SPLICE_SITE_REGION Dbi UTR_5_PRIME Dbi INTRON Dbi	TF binding site BDTNP1_TFBS_da
2L	9929648	2L_9929648_SNP [dm3] 2L_9929648_SNP [dm6]	C	T	3.352e^-4	0.817	UPSTREAM CG42367 INTRON CG42366	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25720398	3R_25720398_SNP [dm3] 3R_29894676_SNP [dm6]	C	T	3.357e^-4	0.817	UPSTREAM CG31038 INTRON CG31038	TF binding site BDTNP1_TFBS_twi
2L	17723044	2L_17723044_SNP [dm3] 2L_17723044_SNP [dm6]	A	G	3.358e^-4	0.817	INTRON CadN	TF binding site BDTNP1_TFBS_dl
X	859133	X_859133_SNP [dm3] X_965100_SNP [dm6]	T	C	3.370e^-4	0.817	INTERGENIC
X	681877	X_681877_SNP [dm3] X_787844_SNP [dm6]	T	G	3.380e^-4	0.817	UTR_3_PRIME tw DOWNSTREAM CG13360
2L	7079411	2L_7079411_SNP [dm3] 2L_7079411_SNP [dm6]	C	T	3.382e^-4	0.817	UPSTREAM CR44611 INTRON Pvf2
2R	9323913	2R_9323913_SNP [dm3] 2R_13436408_SNP [dm6]	G	A	3.383e^-4	0.817	SYNONYMOUS_CODING CG42321 INTRON CG42321	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3351842	3L_3351842_SNP [dm3] 3L_3351842_SNP [dm6]	A	T	3.384e^-4	0.817	INTRON kst	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5450200	2L_5450200_SNP [dm3] 2L_5450200_SNP [dm6]	C	T	3.384e^-4	0.817	INTERGENIC
2R	14220366	2R_14220366_SNP [dm3] 2R_18332861_SNP [dm6]	A	T	3.385e^-4	0.817	INTRON sbb	TF binding site mE1_TFBS_run
3R	10731310	3R_10731310_SNP [dm3] 3R_14905588_SNP [dm6]	C	T	3.388e^-4	0.817	INTERGENIC
2R	18759469	2R_18759469_SNP [dm3] 2R_22871946_SNP [dm6]	T	C	3.394e^-4	0.817	SYNONYMOUS_CODING CG13532	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8885152	3L_8885152_SNP [dm3] 3L_8892052_SNP [dm6]	A	G	3.417e^-4	0.817	SYNONYMOUS_CODING Mcm7 DOWNSTREAM dally	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	16935217	X_16935217_DEL [dm3] X_17041184_DEL [dm6]	TTGTAT	T	3.419e^-4	0.817	INTRON CG45002
2L	6414577	2L_6414577_SNP [dm3] 2L_6414577_SNP [dm6]	T	C	3.424e^-4	0.817	UTR_3_PRIME CG13982 DOWNSTREAM Tig & 1 other
2R	4788772	2R_4788772_SNP [dm3] 2R_8901267_SNP [dm6]	G	A	3.434e^-4	0.817	NON_SYNONYMOUS_CODING MrgBP UPSTREAM Ggamma1 DOWNSTREAM CG13751	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	10470429	3L_10470429_SNP [dm3] 3L_10477329_SNP [dm6]	C	T	3.438e^-4	0.817	INTERGENIC
3R	23917766	3R_23917766_SNP [dm3] 3R_28092044_SNP [dm6]	C	T	3.451e^-4	0.817	INTERGENIC	TF binding site mE1_TFBS_inv
3L	2701922	3L_2701922_SNP [dm3] 3L_2701922_SNP [dm6]	T	C	3.453e^-4	0.817	INTRON Fife
X	11118420	X_11118420_SNP [dm3] X_11224387_SNP [dm6]	T	C	3.456e^-4	0.817	SYNONYMOUS_CODING CG44422 UTR_3_PRIME CG44422 INTRON CG44422	TF binding site mE1_TFBS_chinmo
2L	8975950	2L_8975950_SNP [dm3] 2L_8975950_SNP [dm6]	T	C	3.472e^-4	0.817	UPSTREAM CG9541 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	4430666	2L_4430666_SNP [dm3] 2L_4430666_SNP [dm6]	C	G	3.473e^-4	0.817	INTRON CG15431
X	2056005	X_2056005_SNP [dm3] X_2161972_SNP [dm6]	A	G	3.481e^-4	0.817	SYNONYMOUS_CODING Cyp4d1 UPSTREAM Cyp4d1 & 1 other	TF binding site mE1_TFBS_chinmo
3L	13600609	3L_13600609_SNP [dm3] 3L_13607509_SNP [dm6]	T	C	3.493e^-4	0.817	INTRON bru-3
3R	23284276	3R_23284276_SNP [dm3] 3R_27458554_SNP [dm6]	A	T	3.494e^-4	0.817	INTERGENIC
3L	6211402	3L_6211402_SNP [dm3] 3L_6218302_SNP [dm6]	A	T	3.499e^-4	0.817	UPSTREAM LanA INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	5969749	X_5969749_SNP [dm3] X_6075716_SNP [dm6]	C	A	3.501e^-4	0.817	UPSTREAM Tsp5D DOWNSTREAM CG4666 INTERGENIC
2L	2374494	2L_2374494_SNP [dm3] 2L_2374494_SNP [dm6]	G	A	3.506e^-4	0.817	UTR_5_PRIME CG3609 UPSTREAM CG15390 & 1 other DOWNSTREAM CR44982	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
2R	17544137	2R_17544137_SNP [dm3] 2R_21656632_SNP [dm6]	T	C	3.520e^-4	0.817	SYNONYMOUS_CODING CG10082 EXON CR43786	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13393597	3L_13393597_DEL [dm3] 3L_13400497_DEL [dm6]	AATAG	A	3.523e^-4	0.817	INTRON sens	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6949174	2L_6949174_SNP [dm3] 2L_6949174_SNP [dm6]	A	T	3.530e^-4	0.817	UPSTREAM ihog DOWNSTREAM Gas41 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	13598053	3L_13598053_SNP [dm3] 3L_13604953_SNP [dm6]	A	G	3.532e^-4	0.817	INTRON bru-3
X	20364283	X_20364283_SNP [dm3] X_20493256_SNP [dm6]	C	T	3.532e^-4	0.817	INTRON RhoGAP19D
3R	16994884	3R_16994884_SNP [dm3] 3R_21169162_SNP [dm6]	C	G	3.542e^-4	0.817	UPSTREAM Snmp1 INTRON SNF4Agamma
3R	26394510	3R_26394510_SNP [dm3] 3R_30568788_SNP [dm6]	C	T	3.544e^-4	0.817	INTRON tmod	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13865427	2L_13865427_SNP [dm3] 2L_13865427_SNP [dm6]	T	G	3.545e^-4	0.817	DOWNSTREAM CR44848 INTRON CenG1A
2R	16279449	2R_16279449_SNP [dm3] 2R_20391944_SNP [dm6]	A	T	3.546e^-4	0.817	INTERGENIC
2R	10614047	2R_10614047_SNP [dm3] 2R_14726542_SNP [dm6]	A	G	3.547e^-4	0.817	INTERGENIC
3R	20988620	3R_20988620_SNP [dm3] 3R_25162898_SNP [dm6]	A	T	3.549e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3R	13549063	3R_13549063_SNP [dm3] 3R_17723341_SNP [dm6]	G	T	3.555e^-4	0.817	DOWNSTREAM Pxt INTERGENIC
X	19888768	X_19888768_SNP [dm3] X_19994735_SNP [dm6]	T	A	3.568e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	16090817	2L_16090817_SNP [dm3] 2L_16090817_SNP [dm6]	G	A	3.570e^-4	0.817	INTERGENIC
X	20364632	X_20364632_SNP [dm3] X_20493605_SNP [dm6]	A	G	3.576e^-4	0.817	INTRON RhoGAP19D
X	19188895	X_19188895_SNP [dm3] X_19294862_SNP [dm6]	A	G	3.577e^-4	0.817	INTRON CG8034
2L	17842504	2L_17842504_SNP [dm3] 2L_17842504_SNP [dm6]	T	A	3.588e^-4	0.817	INTRON CadN2
2L	2376743	2L_2376743_SNP [dm3] 2L_2376743_SNP [dm6]	A	T	3.592e^-4	0.817	INTRON Atxn7	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_zfh1
2R	18345998	2R_18345998_SNP [dm3] 2R_22458493_SNP [dm6]	C	T	3.593e^-4	0.817	INTRON CG10384
3L	14541531	3L_14541531_SNP [dm3] 3L_14548431_SNP [dm6]	G	A	3.596e^-4	0.817	INTRON CG9238	TF binding site BDTNP1_TFBS_da
2R	19690202	2R_19690202_SNP [dm3] 2R_23802679_SNP [dm6]	G	T	3.607e^-4	0.817	UTR_3_PRIME CG30177
2L	16011257	2L_16011257_SNP [dm3] 2L_16011257_SNP [dm6]	T	A	3.631e^-4	0.817	INTRON beat-Ic
2L	5069375	2L_5069375_DEL [dm3] 2L_5069375_DEL [dm6]	GTG	G	3.644e^-4	0.817	DOWNSTREAM mir-2495 & 1 other INTRON qtc
3R	20011525	3R_20011525_SNP [dm3] 3R_24185803_SNP [dm6]	C	T	3.649e^-4	0.817	UPSTREAM CHORD INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	6627127	2R_6627127_SNP [dm3] 2R_10739622_SNP [dm6]	A	G	3.652e^-4	0.817	SYNONYMOUS_CODING Mat1 DOWNSTREAM CG33144	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	13294566	3R_13294566_SNP [dm3] 3R_17468844_SNP [dm6]	T	G	3.653e^-4	0.817	INTERGENIC
2L	16011311	2L_16011311_SNP [dm3] 2L_16011311_SNP [dm6]	C	T	3.653e^-4	0.817	INTRON beat-Ic
2R	6506714	2R_6506714_SNP [dm3] 2R_10619209_SNP [dm6]	A	T	3.654e^-4	0.817	INTRON CG11883	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	13929563	2R_13929563_SNP [dm3] 2R_18042058_SNP [dm6]	G	C	3.671e^-4	0.817	DOWNSTREAM CG5773 INTERGENIC
2R	12680868	2R_12680868_SNP [dm3] 2R_16793363_SNP [dm6]	G	A	3.676e^-4	0.817	NON_SYNONYMOUS_CODING CG15615 DOWNSTREAM CG5522 & 1 other
X	10785639	X_10785639_INS [dm3] X_10891606_INS [dm6]	T	TTCACCT	3.680e^-4	0.817	UPSTREAM Ork1 & 1 other EXON CR45616
3R	17484764	3R_17484764_SNP [dm3] 3R_21659042_SNP [dm6]	T	C	3.681e^-4	0.817	INTRON E2f
3R	26494712	3R_26494712_SNP [dm3] 3R_30668990_SNP [dm6]	T	G	3.686e^-4	0.817	INTERGENIC
3L	13985948	3L_13985948_SNP [dm3] 3L_13992848_SNP [dm6]	A	G	3.689e^-4	0.817	UTR_5_PRIME CG17364 INTRON CG17364	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	8984281	2L_8984281_SNP [dm3] 2L_8984281_SNP [dm6]	A	G	3.690e^-4	0.817	INTRON CG13101	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2104518	3L_2104518_SNP [dm3] 3L_2104518_SNP [dm6]	G	A	3.694e^-4	0.817	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_chinmo
2R	18017781	2R_18017781_SNP [dm3] 2R_22130276_SNP [dm6]	T	C	3.703e^-4	0.817	UTR_3_PRIME CG34205 DOWNSTREAM NtR	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	8984338	2L_8984338_SNP [dm3] 2L_8984338_SNP [dm6]	G	A	3.703e^-4	0.817	INTRON CG13101	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3782938	X_3782938_SNP [dm3] X_3888905_SNP [dm6]	C	T	3.714e^-4	0.817	SYNONYMOUS_CODING CG15239	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24787811	3R_24787811_SNP [dm3] 3R_28962089_SNP [dm6]	G	A	3.734e^-4	0.817	INTRON CG14521
3R	3483086	3R_3483086_SNP [dm3] 3R_7657364_SNP [dm6]	G	A	3.736e^-4	0.817	UPSTREAM Nlg1 INTERGENIC
X	6264398	X_6264398_SNP [dm3] X_6370365_SNP [dm6]	T	C	3.737e^-4	0.817	UTR_3_PRIME Marf DOWNSTREAM CR44816 & 1 other
X	16144779	X_16144779_SNP [dm3] X_16250746_SNP [dm6]	C	T	3.741e^-4	0.817	INTERGENIC
2L	16340389	2L_16340389_SNP [dm3] 2L_16340389_SNP [dm6]	T	G	3.742e^-4	0.817	UPSTREAM CG42266 DOWNSTREAM CG44405 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2702197	3L_2702197_SNP [dm3] 3L_2702197_SNP [dm6]	T	C	3.743e^-4	0.817	INTRON Fife
3R	10728938	3R_10728938_SNP [dm3] 3R_14903216_SNP [dm6]	C	G	3.747e^-4	0.817	UTR_3_PRIME VhaPPA1-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	20988285	3R_20988285_SNP [dm3] 3R_25162563_SNP [dm6]	G	T	3.753e^-4	0.817	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	4180548	3L_4180548_SNP [dm3] 3L_4180548_SNP [dm6]	A	T	3.759e^-4	0.817	INTRON CG18675 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	9220885	X_9220885_SNP [dm3] X_9326852_SNP [dm6]	C	T	3.762e^-4	0.817	UTR_3_PRIME CG34449
2R	13804692	2R_13804692_SNP [dm3] 2R_17917187_SNP [dm6]	T	G	3.771e^-4	0.817	INTRON Elk
2L	16340364	2L_16340364_SNP [dm3] 2L_16340364_SNP [dm6]	T	G	3.774e^-4	0.817	UTR_5_PRIME CG42266 DOWNSTREAM CG44405	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16739667	2R_16739667_SNP [dm3] 2R_20852162_SNP [dm6]	C	T	3.784e^-4	0.817	UPSTREAM CG9993 INTERGENIC
3L	5276691	3L_5276691_SNP [dm3] 3L_5283591_SNP [dm6]	A	C	3.784e^-4	0.817	INTERGENIC
3L	8885260	3L_8885260_SNP [dm3] 3L_8892160_SNP [dm6]	C	T	3.791e^-4	0.817	SYNONYMOUS_CODING Mcm7 DOWNSTREAM dally	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	8724276	3R_8724276_INS [dm3] 3R_12898554_INS [dm6]	A	AA	3.791e^-4	0.817	INTERGENIC
3R	15520432	3R_15520432_SNP [dm3] 3R_19694710_SNP [dm6]	G	C	3.791e^-4	0.817	INTRON Naam
3R	13549012	3R_13549012_SNP [dm3] 3R_17723290_SNP [dm6]	G	T	3.795e^-4	0.817	DOWNSTREAM Pxt INTERGENIC
X	9195197	X_9195197_DEL [dm3] X_9301164_DEL [dm6]	ATTTGCTTTTTG...	A	3.798e^-4	0.817	INTRON lz
2R	6509546	2R_6509546_SNP [dm3] 2R_10622041_SNP [dm6]	G	A	3.803e^-4	0.817	UPSTREAM CG11883 INTRON CG11883
3L	12602500	3L_12602500_DEL [dm3] 3L_12609400_DEL [dm6]	GAAC	G	3.812e^-4	0.817	UPSTREAM caup INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	6646963	3L_6646963_SNP [dm3] 3L_6653863_SNP [dm6]	A	G	3.823e^-4	0.817	INTERGENIC
3R	26856725	3R_26856725_SNP [dm3] 3R_31031003_SNP [dm6]	G	C	3.833e^-4	0.817	INTERGENIC
X	21346907	X_21346907_SNP [dm3] X_21475880_SNP [dm6]	G	T	3.837e^-4	0.817	INTERGENIC
3R	26494732	3R_26494732_SNP [dm3] 3R_30669010_SNP [dm6]	G	A	3.838e^-4	0.817	INTERGENIC
3R	8716303	3R_8716303_SNP [dm3] 3R_12890581_SNP [dm6]	C	T	3.838e^-4	0.817	INTERGENIC
3L	948214	3L_948214_SNP [dm3] 3L_948214_SNP [dm6]	G	A	3.846e^-4	0.817	INTRON Glut1
2L	10724704	2L_10724704_SNP [dm3] 2L_10724704_SNP [dm6]	T	A	3.850e^-4	0.817	UPSTREAM CG6431 INTRON CG6431
2R	16906007	2R_16906007_SNP [dm3] 2R_21018502_SNP [dm6]	A	G	3.856e^-4	0.817	UPSTREAM RIC-3 INTRON RIC-3
3R	20988964	3R_20988964_SNP [dm3] 3R_25163242_SNP [dm6]	A	G	3.860e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6118143	3L_6118143_SNP [dm3] 3L_6125043_SNP [dm6]	C	A	3.865e^-4	0.817	INTRON l_3_mbn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
3R	13548977	3R_13548977_SNP [dm3] 3R_17723255_SNP [dm6]	T	A	3.867e^-4	0.817	DOWNSTREAM Pxt INTERGENIC
2R	16243969	2R_16243969_SNP [dm3] 2R_20356464_SNP [dm6]	T	A	3.870e^-4	0.817	INTERGENIC
3R	26856672	3R_26856672_SNP [dm3] 3R_31030950_SNP [dm6]	G	C	3.877e^-4	0.817	INTERGENIC
2L	16473659	2L_16473659_SNP [dm3] 2L_16473659_SNP [dm6]	A	T	3.879e^-4	0.817	INTRON dac
3L	11069905	3L_11069905_SNP [dm3] 3L_11076805_SNP [dm6]	A	G	3.882e^-4	0.817	SYNONYMOUS_CODING CG7839	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	12390109	2R_12390109_SNP [dm3] 2R_16502604_SNP [dm6]	A	G	3.883e^-4	0.817	INTRON Sema-2a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5897804	2R_5897804_SNP [dm3] 2R_10010299_SNP [dm6]	T	C	3.886e^-4	0.817	INTRON Pka-R2	TF binding site BDTNP1_TFBS_twi
2R	16906004	2R_16906004_SNP [dm3] 2R_21018499_SNP [dm6]	T	C	3.908e^-4	0.817	UPSTREAM RIC-3 INTRON RIC-3
2R	17586441	2R_17586441_SNP [dm3] 2R_21698936_SNP [dm6]	A	C	3.910e^-4	0.817	INTRON HmgZ
X	54239	X_54239_SNP [dm3] X_157852_SNP [dm6]	T	A	3.912e^-4	0.817	INTRON tyn
2R	15404854	2R_15404854_SNP [dm3] 2R_19517349_SNP [dm6]	G	A	3.913e^-4	0.817	DOWNSTREAM sm INTERGENIC
2L	4201845	2L_4201845_SNP [dm3] 2L_4201845_SNP [dm6]	T	A	3.917e^-4	0.817	INTRON ft	TF binding site mE1_TFBS_chinmo
3L	13289945	3L_13289945_SNP [dm3] 3L_13296845_SNP [dm6]	C	T	3.918e^-4	0.817	SYNONYMOUS_CODING Sfp70A4 UPSTREAM CR45253 DOWNSTREAM CR45255	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	400017	3R_400017_SNP [dm3] 3R_4574295_SNP [dm6]	T	C	3.922e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8251668	2L_8251668_SNP [dm3] 2L_8251668_SNP [dm6]	T	A	3.938e^-4	0.817	INTRON CG8086
2L	7041424	2L_7041424_SNP [dm3] 2L_7041424_SNP [dm6]	G	A	3.954e^-4	0.817	UPSTREAM milt INTRON milt
2L	1785779	2L_1785779_SNP [dm3] 2L_1785779_SNP [dm6]	G	C	3.960e^-4	0.817	DOWNSTREAM Gr22e INTERGENIC
X	14075615	X_14075615_SNP [dm3] X_14181582_SNP [dm6]	G	A	3.961e^-4	0.817	NON_SYNONYMOUS_CODING CG11584	TF binding site mE1_TFBS_chinmo
2R	12824828	2R_12824828_SNP [dm3] 2R_16937323_SNP [dm6]	A	T	3.966e^-4	0.817	UPSTREAM CG43788 INTRON Pkc53E
2L	6102386	2L_6102386_SNP [dm3] 2L_6102386_SNP [dm6]	A	G	3.967e^-4	0.817	INTRON stai
2R	8618835	2R_8618835_SNP [dm3] 2R_12731330_SNP [dm6]	T	A	3.972e^-4	0.817	INTRON CG42663	TF binding site BDTNP1_TFBS_dl
3R	13766229	3R_13766229_SNP [dm3] 3R_17940507_SNP [dm6]	A	G	3.977e^-4	0.817	INTRON cpo	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	6645242	2R_6645242_SNP [dm3] 2R_10757737_SNP [dm6]	C	A	3.987e^-4	0.817	INTRON CG33144	TF binding site mE1_TFBS_chinmo
3L	13264634	3L_13264634_SNP [dm3] 3L_13271534_SNP [dm6]	A	C	3.988e^-4	0.817	INTRON caps
2L	16340388	2L_16340388_SNP [dm3] 2L_16340388_SNP [dm6]	G	T	4.005e^-4	0.817	UPSTREAM CG42266 DOWNSTREAM CG44405 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13398759	2L_13398759_SNP [dm3] 2L_13398759_SNP [dm6]	T	G	4.009e^-4	0.817	UPSTREAM CG7110 & 1 other DOWNSTREAM CR44600 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10144363	2R_10144363_SNP [dm3] 2R_14256858_SNP [dm6]	T	C	4.016e^-4	0.817	SYNONYMOUS_CODING CG8531 UPSTREAM Hsc70-5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	7061489	3L_7061489_SNP [dm3] 3L_7068389_SNP [dm6]	C	T	4.020e^-4	0.817	SYNONYMOUS_CODING CG32391 DOWNSTREAM CG14823 INTRON CG8641
2L	9107597	2L_9107597_SNP [dm3] 2L_9107597_SNP [dm6]	C	T	4.020e^-4	0.817	INTERGENIC
3R	22813933	3R_22813933_SNP [dm3] 3R_26988211_SNP [dm6]	A	T	4.021e^-4	0.817	UPSTREAM CG31075 DOWNSTREAM CG31076 INTRON CG31075
2R	15192875	2R_15192875_SNP [dm3] 2R_19305370_SNP [dm6]	C	T	4.023e^-4	0.817	SYNONYMOUS_CODING CG7461 DOWNSTREAM Tab2	TF binding site mE1_TFBS_sens
2L	14150352	2L_14150352_SNP [dm3] 2L_14150352_SNP [dm6]	G	A	4.029e^-4	0.817	INTRON CG17341
2L	6754244	2L_6754244_SNP [dm3] 2L_6754244_SNP [dm6]	G	A	4.030e^-4	0.817	SYNONYMOUS_CODING CG11221	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16437733	X_16437733_SNP [dm3] X_16543700_SNP [dm6]	G	T	4.033e^-4	0.817	NON_SYNONYMOUS_CODING CG9902
2L	19333222	2L_19333222_SNP [dm3] 2L_19333222_SNP [dm6]	A	G	4.040e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	5527896	X_5527896_SNP [dm3] X_5633863_SNP [dm6]	G	T	4.042e^-4	0.817	SPLICE_SITE_REGION CG42492 INTRON CG42492
2R	8541781	2R_8541781_SNP [dm3] 2R_12654276_SNP [dm6]	T	A	4.044e^-4	0.817	INTRON ZnT49B
X	344477	X_344477_SNP [dm3] X_450444_SNP [dm6]	A	T	4.061e^-4	0.817	INTRON CG32816
X	8772301	X_8772301_SNP [dm3] X_8878268_SNP [dm6]	G	A	4.062e^-4	0.817	INTRON Moe
2L	8580702	2L_8580702_SNP [dm3] 2L_8580702_SNP [dm6]	G	T	4.068e^-4	0.817	INTRON Sema-1a
2L	1972749	2L_1972749_SNP [dm3] 2L_1972749_SNP [dm6]	G	A	4.071e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2L	16011344	2L_16011344_SNP [dm3] 2L_16011344_SNP [dm6]	T	A	4.075e^-4	0.817	INTRON beat-Ic
3R	12251421	3R_12251421_SNP [dm3] 3R_16425699_SNP [dm6]	T	A	4.076e^-4	0.817	UPSTREAM tRNA:CR31497 INTERGENIC	regulatory region REDfly_CRMs
3L	9794883	3L_9794883_SNP [dm3] 3L_9801783_SNP [dm6]	C	T	4.078e^-4	0.817	SYNONYMOUS_CODING Ilp3 INTRON CG32052	TF binding site mE1_TFBS_cad
2R	19227203	2R_19227203_SNP [dm3] 2R_23339680_SNP [dm6]	G	C	4.084e^-4	0.817	INTERGENIC
3L	2742838	3L_2742838_SNP [dm3] 3L_2742838_SNP [dm6]	G	C	4.086e^-4	0.817	INTRON Mrtf
2R	9542779	2R_9542779_SNP [dm3] 2R_13655274_SNP [dm6]	C	G	4.088e^-4	0.817	INTRON fas
2R	17959458	2R_17959458_SNP [dm3] 2R_22071953_SNP [dm6]	C	T	4.100e^-4	0.817	SYNONYMOUS_CODING CG11474 UPSTREAM CG11475	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9648248	3R_9648248_SNP [dm3] 3R_13822526_SNP [dm6]	A	G	4.101e^-4	0.817	INTERGENIC
2L	2837940	2L_2837940_DEL [dm3] 2L_2837940_DEL [dm6]	GAGGCATCAAG...	G	4.111e^-4	0.817	UPSTREAM Cpr23B & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	6699664	3L_6699664_SNP [dm3] 3L_6706564_SNP [dm6]	A	G	4.113e^-4	0.817	INTRON CG8519
X	219452	X_219452_SNP [dm3] X_325419_SNP [dm6]	A	T	4.120e^-4	0.817	INTRON CG3777 & 1 other
2R	8282242	2R_8282242_SNP [dm3] 2R_12394737_SNP [dm6]	G	A	4.123e^-4	0.817	UPSTREAM CG30048 INTRON Or49a
X	1344399	X_1344399_SNP [dm3] X_1450366_SNP [dm6]	G	A	4.129e^-4	0.817	UTR_3_PRIME futsch
2R	6634331	2R_6634331_DEL [dm3] 2R_10746826_DEL [dm6]	AA	A	4.134e^-4	0.817	INTRON CG33144
X	911262	X_911262_SNP [dm3] X_1017229_SNP [dm6]	T	C	4.139e^-4	0.817	INTRON su_w[a]_ & 1 other
2L	11343172	2L_11343172_SNP [dm3] 2L_11343172_SNP [dm6]	T	G	4.144e^-4	0.817	UTR_5_PRIME CG14926	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	6204334	X_6204334_SNP [dm3] X_6310301_SNP [dm6]	C	A	4.152e^-4	0.817	INTRON CG15894
3L	17122360	3L_17122360_SNP [dm3] 3L_17129260_SNP [dm6]	C	A	4.157e^-4	0.817	INTRON Rbp6
2L	16340847	2L_16340847_SNP [dm3] 2L_16340847_SNP [dm6]	G	T	4.162e^-4	0.817	NON_SYNONYMOUS_CODING CG44405 UPSTREAM CG42266	TF binding site mE1_TFBS_sens
2L	16754365	2L_16754365_SNP [dm3] 2L_16754365_SNP [dm6]	G	A	4.170e^-4	0.817	UTR_5_PRIME yellow-b DOWNSTREAM CG17912	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	7039952	2L_7039952_SNP [dm3] 2L_7039952_SNP [dm6]	A	T	4.170e^-4	0.817	INTRON milt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4430653	2L_4430653_SNP [dm3] 2L_4430653_SNP [dm6]	T	A	4.181e^-4	0.817	INTRON CG15431
3L	2705639	3L_2705639_SNP [dm3] 3L_2705639_SNP [dm6]	C	T	4.188e^-4	0.817	INTRON Fife
X	5012909	X_5012909_SNP [dm3] X_5118876_SNP [dm6]	A	G	4.192e^-4	0.817	INTRON rg & 1 other
3R	13549071	3R_13549071_DEL [dm3] 3R_17723349_DEL [dm6]	TG	T	4.198e^-4	0.817	DOWNSTREAM Pxt INTERGENIC
3R	3553595	3R_3553595_SNP [dm3] 3R_7727873_SNP [dm6]	A	G	4.206e^-4	0.817	INTERGENIC
3R	18911104	3R_18911104_SNP [dm3] 3R_23085382_SNP [dm6]	C	G	4.211e^-4	0.817	INTRON CG13830
3L	7602118	3L_7602118_SNP [dm3] 3L_7609018_SNP [dm6]	A	G	4.230e^-4	0.817	INTRON CG33275
3R	23737768	3R_23737768_SNP [dm3] 3R_27912046_SNP [dm6]	C	T	4.232e^-4	0.817	UPSTREAM hanabi INTERGENIC
2L	14259915	2L_14259915_SNP [dm3] 2L_14259915_SNP [dm6]	A	G	4.238e^-4	0.817	INTERGENIC
3L	11230937	3L_11230937_SNP [dm3] 3L_11237837_SNP [dm6]	C	T	4.245e^-4	0.817	UPSTREAM CR44718 DOWNSTREAM CR44719 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14118774	2L_14118774_SNP [dm3] 2L_14118774_SNP [dm6]	C	T	4.258e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3L	21569158	3L_21569158_SNP [dm3] 3L_21576058_SNP [dm6]	G	A	4.271e^-4	0.817	DOWNSTREAM CG32441 EXON CR43939
3L	7302924	3L_7302924_INS [dm3] 3L_7309824_INS [dm6]	T	TAATCTGCAGACAATT...	4.272e^-4	0.817	INTRON unc-13-4A
2L	2587594	2L_2587594_SNP [dm3] 2L_2587594_SNP [dm6]	G	T	4.278e^-4	0.817	INTERGENIC
3R	20988248	3R_20988248_SNP [dm3] 3R_25162526_SNP [dm6]	A	G	4.282e^-4	0.817	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	9244236	3R_9244236_SNP [dm3] 3R_13418514_SNP [dm6]	A	G	4.288e^-4	0.817	INTERGENIC	TF binding site mE1_TFBS_sbb
3L	7061273	3L_7061273_SNP [dm3] 3L_7068173_SNP [dm6]	G	A	4.290e^-4	0.817	SYNONYMOUS_CODING CG14823 UTR_3_PRIME CG14823 DOWNSTREAM CG32391 INTRON CG8641
3R	3321290	3R_3321290_SNP [dm3] 3R_7495568_SNP [dm6]	A	G	4.295e^-4	0.817	INTRON alpha-Est9
3R	3492801	3R_3492801_SNP [dm3] 3R_7667079_SNP [dm6]	C	A	4.300e^-4	0.817	INTRON Nlg1
3R	25723162	3R_25723162_SNP [dm3] 3R_29897440_SNP [dm6]	A	C	4.301e^-4	0.817	NON_SYNONYMOUS_CODING CG31038	TF binding site mE1_TFBS_chinmo
2L	14059299	2L_14059299_SNP [dm3] 2L_14059299_SNP [dm6]	C	T	4.301e^-4	0.817	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_sna
X	19188863	X_19188863_SNP [dm3] X_19294830_SNP [dm6]	A	G	4.305e^-4	0.817	INTRON CG8034
X	3973753	X_3973753_SNP [dm3] X_4079720_SNP [dm6]	A	T	4.309e^-4	0.817	INTRON CG43689	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	6533546	3L_6533546_SNP [dm3] 3L_6540446_SNP [dm6]	C	G	4.310e^-4	0.817	INTRON sfl
2R	6063363	2R_6063363_SNP [dm3] 2R_10175858_SNP [dm6]	A	T	4.312e^-4	0.817	INTRON KCNQ
3L	14199802	3L_14199802_SNP [dm3] 3L_14206702_SNP [dm6]	T	C	4.315e^-4	0.817	INTRON nuf	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2L	6110522	2L_6110522_SNP [dm3] 2L_6110522_SNP [dm6]	A	T	4.320e^-4	0.817	INTRON stai
3R	20616796	3R_20616796_SNP [dm3] 3R_24791074_SNP [dm6]	T	C	4.325e^-4	0.817	UPSTREAM CG13634 INTRON Ets96B	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4696286	3L_4696286_SNP [dm3] 3L_4696286_SNP [dm6]	T	G	4.326e^-4	0.817	INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	5195492	3L_5195492_SNP [dm3] 3L_5202392_SNP [dm6]	G	C	4.330e^-4	0.817	UPSTREAM shep INTRON shep
3L	6824850	3L_6824850_SNP [dm3] 3L_6831750_SNP [dm6]	A	C	4.334e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12387466	2R_12387466_DEL [dm3] 2R_16499961_DEL [dm6]	AGA	A	4.338e^-4	0.817	UPSTREAM Sema-2a & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	20367048	X_20367048_SNP [dm3] X_20496021_SNP [dm6]	A	T	4.346e^-4	0.817	INTRON RhoGAP19D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13289980	3L_13289980_SNP [dm3] 3L_13296880_SNP [dm6]	T	C	4.349e^-4	0.817	UPSTREAM CR45253 & 1 other DOWNSTREAM CR45255 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11230920	3L_11230920_SNP [dm3] 3L_11237820_SNP [dm6]	A	C	4.353e^-4	0.817	UPSTREAM CR44718 DOWNSTREAM CR44719 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14402495	3L_14402495_SNP [dm3] 3L_14409395_SNP [dm6]	T	A	4.363e^-4	0.817	UPSTREAM stwl DOWNSTREAM CR45233 INTRON stwl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	12888560	2R_12888560_SNP [dm3] 2R_17001055_SNP [dm6]	C	A	4.363e^-4	0.817	SYNONYMOUS_CODING ste24a UPSTREAM ste24b & 1 other	TF binding site mE1_TFBS_sens
X	911895	X_911895_SNP [dm3] X_1017862_SNP [dm6]	G	C	4.369e^-4	0.817	INTRON su_w[a]_ & 1 other
3R	20988489	3R_20988489_SNP [dm3] 3R_25162767_SNP [dm6]	A	G	4.372e^-4	0.817	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3654332	3L_3654332_SNP [dm3] 3L_3654332_SNP [dm6]	C	T	4.373e^-4	0.817	DOWNSTREAM dar1 INTRON CG10862
2L	17737890	2L_17737890_SNP [dm3] 2L_17737890_SNP [dm6]	G	A	4.374e^-4	0.817	INTRON CadN	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16238372	2R_16238372_SNP [dm3] 2R_20350867_SNP [dm6]	C	G	4.385e^-4	0.817	INTERGENIC
3L	11536866	3L_11536866_SNP [dm3] 3L_11543766_SNP [dm6]	T	G	4.385e^-4	0.817	INTRON Mob2
2R	12829482	2R_12829482_SNP [dm3] 2R_16941977_SNP [dm6]	A	T	4.387e^-4	0.817	SYNONYMOUS_CODING Pkc53E
X	16934902	X_16934902_SNP [dm3] X_17040869_SNP [dm6]	A	G	4.400e^-4	0.817	INTRON CG45002
3R	3544841	3R_3544841_SNP [dm3] 3R_7719119_SNP [dm6]	G	A	4.400e^-4	0.817	UPSTREAM CR44260 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	6256261	3L_6256261_SNP [dm3] 3L_6263161_SNP [dm6]	C	A	4.403e^-4	0.817	UPSTREAM ImpL3 EXON CR44522	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	22692380	3R_22692380_DEL [dm3] 3R_26866658_DEL [dm6]	TA	T	4.416e^-4	0.817	SPLICE_SITE_REGION ball UPSTREAM His2Av & 1 other INTRON ball	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_Stat92E mE1_TFBS_ttk
2L	7103097	2L_7103097_SNP [dm3] 2L_7103097_SNP [dm6]	T	A	4.421e^-4	0.817	INTRON Pvf3
2R	6642555	2R_6642555_SNP [dm3] 2R_10755050_SNP [dm6]	G	A	4.421e^-4	0.817	SYNONYMOUS_CODING CG33144	TF binding site mE1_TFBS_chinmo
3R	26541185	3R_26541185_SNP [dm3] 3R_30715463_SNP [dm6]	T	C	4.424e^-4	0.817	INTERGENIC
3L	14642169	3L_14642169_SNP [dm3] 3L_14649069_SNP [dm6]	A	T	4.428e^-4	0.817	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	17610235	X_17610235_SNP [dm3] X_17716202_SNP [dm6]	G	A	4.432e^-4	0.817	INTRON CG42684
3R	26494966	3R_26494966_SNP [dm3] 3R_30669244_SNP [dm6]	G	A	4.434e^-4	0.817	INTERGENIC
X	16934977	X_16934977_SNP [dm3] X_17040944_SNP [dm6]	C	T	4.434e^-4	0.817	INTRON CG45002
2L	3825053	2L_3825053_SNP [dm3] 2L_3825053_SNP [dm6]	A	T	4.439e^-4	0.817	UPSTREAM slp1 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	8719117	3R_8719117_SNP [dm3] 3R_12893395_SNP [dm6]	A	T	4.439e^-4	0.817	UPSTREAM CR44235 DOWNSTREAM CR33929 & 1 other INTERGENIC
3L	5467143	3L_5467143_SNP [dm3] 3L_5474043_SNP [dm6]	G	T	4.441e^-4	0.817	INTERGENIC
3L	16822335	3L_16822335_SNP [dm3] 3L_16829235_SNP [dm6]	G	C	4.442e^-4	0.817	UPSTREAM CG13024 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	6949073	2L_6949073_INS [dm3] 2L_6949073_INS [dm6]	G	GG	4.444e^-4	0.817	UPSTREAM ihog DOWNSTREAM Gas41 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	11901868	3R_11901868_SNP [dm3] 3R_16076146_SNP [dm6]	T	G	4.455e^-4	0.817	UTR_5_PRIME Mhcl INTRON Mhcl
2R	13804690	2R_13804690_SNP [dm3] 2R_17917185_SNP [dm6]	A	T	4.459e^-4	0.817	INTRON Elk
3L	13150502	3L_13150502_INS [dm3] 3L_13157402_INS [dm6]	T	TAGGA	4.459e^-4	0.817	INTERGENIC
X	21046595	X_21046595_SNP [dm3] X_21175568_SNP [dm6]	G	A	4.468e^-4	0.817	INTERGENIC
2L	10102426	2L_10102426_SNP [dm3] 2L_10102426_SNP [dm6]	T	A	4.481e^-4	0.817	INTRON CG44153 & 1 other
3R	25420427	3R_25420427_SNP [dm3] 3R_29594705_SNP [dm6]	A	C	4.484e^-4	0.817	INTRON alph	TF binding site mE1_TFBS_cad
3L	11536867	3L_11536867_SNP [dm3] 3L_11543767_SNP [dm6]	T	A	4.489e^-4	0.817	INTRON Mob2
2R	8840299	2R_8840299_SNP [dm3] 2R_12952794_SNP [dm6]	G	T	4.489e^-4	0.817	UPSTREAM CG13321 & 2 others INTERGENIC
2L	22041330	2L_22041330_SNP [dm3] 2L_22041330_SNP [dm6]	T	G	4.499e^-4	0.817	NON_SYNONYMOUS_CODING CG31601
3L	3430790	3L_3430790_SNP [dm3] 3L_3430790_SNP [dm6]	C	G	4.500e^-4	0.817	INTRON eIF5B
3R	7753426	3R_7753426_SNP [dm3] 3R_11927704_SNP [dm6]	A	G	4.506e^-4	0.817	INTRON Cad87A
2L	17132961	2L_17132961_SNP [dm3] 2L_17132961_SNP [dm6]	T	A	4.508e^-4	0.817	INTRON beat-IIIa & 1 other
2L	6764307	2L_6764307_SNP [dm3] 2L_6764307_SNP [dm6]	C	T	4.508e^-4	0.817	NON_SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_sens
3R	26058055	3R_26058055_SNP [dm3] 3R_30232333_SNP [dm6]	G	A	4.510e^-4	0.817	INTERGENIC
3L	10126214	3L_10126214_SNP [dm3] 3L_10133114_SNP [dm6]	G	C	4.515e^-4	0.817	INTRON dpr6
3L	18071298	3L_18071298_SNP [dm3] 3L_18078198_SNP [dm6]	C	A	4.519e^-4	0.817	DOWNSTREAM CR45392 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	5276701	3L_5276701_DEL [dm3] 3L_5283601_DEL [dm6]	TGACTCATTAAATTAT...	T	4.521e^-4	0.817	INTERGENIC
2R	15404767	2R_15404767_SNP [dm3] 2R_19517262_SNP [dm6]	T	G	4.528e^-4	0.817	DOWNSTREAM sm INTERGENIC
2L	3243400	2L_3243400_SNP [dm3] 2L_3243400_SNP [dm6]	C	T	4.533e^-4	0.817	INTERGENIC
3L	11230925	3L_11230925_SNP [dm3] 3L_11237825_SNP [dm6]	G	A	4.536e^-4	0.817	UPSTREAM CR44718 DOWNSTREAM CR44719 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3469787	3L_3469787_SNP [dm3] 3L_3469787_SNP [dm6]	T	G	4.539e^-4	0.817	INTRON CG14971

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.947e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.0007511
In_2R_NS	0.0215397

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	4.2768	0.0386
In_2L_t	11.4001	0.0033

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2223 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	18628743	2L_18628743_SNP [dm3] 2L_18628743_SNP [dm6]	A	T	9.158e^-7	0.775	INTRON MESR3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	15966199	X_15966199_SNP [dm3] X_16072166_SNP [dm6]	G	A	1.088e^-6	0.775	INTRON Nipsnap	TF binding site BDTNP1_TFBS_dl
3R	4215867	3R_4215867_SNP [dm3] 3R_8390145_SNP [dm6]	A	T	2.377e^-6	0.775	INTRON CG45263	TF binding site BDTNP1_TFBS_dl
X	18699488	X_18699488_SNP [dm3] X_18805455_SNP [dm6]	C	T	2.837e^-6	0.775	SYNONYMOUS_CODING Pk17E EXON CR44841	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	16797403	2L_16797403_SNP [dm3] 2L_16797403_SNP [dm6]	A	C	3.192e^-6	0.775	SYNONYMOUS_CODING Ugt36Bb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7976267	3R_7976267_SNP [dm3] 3R_12150545_SNP [dm6]	A	G	3.356e^-6	0.775	NON_SYNONYMOUS_CODING dpr15
3L	5751610	3L_5751610_SNP [dm3] 3L_5758510_SNP [dm6]	C	T	4.407e^-6	0.775	SYNONYMOUS_CODING Ubp64E	TF binding site mE1_TFBS_cad
2L	18344540	2L_18344540_SNP [dm3] 2L_18344540_SNP [dm6]	G	A	4.451e^-6	0.775	INTRON Fas3
X	15966089	X_15966089_SNP [dm3] X_16072056_SNP [dm6]	C	T	4.962e^-6	0.775	INTRON Nipsnap	TF binding site BDTNP1_TFBS_dl
2R	11708517	2R_11708517_SNP [dm3] 2R_15821012_SNP [dm6]	T	C	5.101e^-6	0.775	NON_SYNONYMOUS_CODING CG33465 INTRON tun	TF binding site mE1_TFBS_bab1
3L	13369826	3L_13369826_SNP [dm3] 3L_13376726_SNP [dm6]	T	G	5.355e^-6	0.775	INTERGENIC
3L	2121363	3L_2121363_SNP [dm3] 3L_2121363_SNP [dm6]	C	G	5.937e^-6	0.775	INTRON zormin	TF binding site BDTNP1_TFBS_twi
3R	23381243	3R_23381243_SNP [dm3] 3R_27555521_SNP [dm6]	A	G	5.954e^-6	0.775	SYNONYMOUS_CODING Klp98A
3L	12708836	3L_12708836_SNP [dm3] 3L_12715736_SNP [dm6]	G	A	6.069e^-6	0.775	INTERGENIC
2R	11709912	2R_11709912_SNP [dm3] 2R_15822407_SNP [dm6]	G	C	6.585e^-6	0.775	INTRON tun	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8580408	2L_8580408_SNP [dm3] 2L_8580408_SNP [dm6]	G	T	6.679e^-6	0.775	INTRON Sema-1a
2R	11708516	2R_11708516_SNP [dm3] 2R_15821011_SNP [dm6]	C	T	7.025e^-6	0.775	SYNONYMOUS_CODING CG33465 INTRON tun	TF binding site mE1_TFBS_bab1
3L	13266691	3L_13266691_SNP [dm3] 3L_13273591_SNP [dm6]	G	T	8.811e^-6	0.786	INTRON caps
3R	10873788	3R_10873788_SNP [dm3] 3R_15048066_SNP [dm6]	C	A	9.530e^-6	0.786	INTERGENIC
2L	18323682	2L_18323682_SNP [dm3] 2L_18323682_SNP [dm6]	C	G	9.889e^-6	0.786	INTRON Fas3
2R	11708486	2R_11708486_SNP [dm3] 2R_15820981_SNP [dm6]	T	G	1.094e^-5	0.786	SYNONYMOUS_CODING CG33465 INTRON tun	TF binding site mE1_TFBS_bab1
3R	880864	3R_880864_SNP [dm3] 3R_5055142_SNP [dm6]	G	A	1.145e^-5	0.786	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16023450	2R_16023450_SNP [dm3] 2R_20135945_SNP [dm6]	G	T	1.188e^-5	0.786	DOWNSTREAM CR44634 INTERGENIC
3L	20263539	3L_20263539_SNP [dm3] 3L_20270439_SNP [dm6]	G	T	1.234e^-5	0.786	INTRON gogo
3L	8838722	3L_8838722_DEL [dm3] 3L_8845622_DEL [dm6]	GG	G	1.265e^-5	0.786	INTRON dally
3L	2096916	3L_2096916_SNP [dm3] 3L_2096916_SNP [dm6]	C	T	1.496e^-5	0.786	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad
3R	1785600	3R_1785600_SNP [dm3] 3R_5959878_SNP [dm6]	A	T	1.573e^-5	0.786	UPSTREAM CG34113 DOWNSTREAM CG11373 INTERGENIC
2L	18441771	2L_18441771_SNP [dm3] 2L_18441771_SNP [dm6]	C	G	1.607e^-5	0.786	UTR_3_PRIME RpS26 DOWNSTREAM RpS26	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3R	26723702	3R_26723702_SNP [dm3] 3R_30897980_SNP [dm6]	C	T	1.692e^-5	0.786	SYNONYMOUS_CODING Cyp4c3
3L	2093487	3L_2093487_SNP [dm3] 3L_2093487_SNP [dm6]	A	T	1.762e^-5	0.786	INTRON sls
X	15966361	X_15966361_SNP [dm3] X_16072328_SNP [dm6]	C	T	1.779e^-5	0.786	INTRON Nipsnap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18180607	X_18180607_SNP [dm3] X_18286574_SNP [dm6]	C	T	1.780e^-5	0.786	INTERGENIC
3L	15874250	3L_15874250_SNP [dm3] 3L_15881150_SNP [dm6]	C	T	1.802e^-5	0.786	INTRON pHCl
2L	18323688	2L_18323688_SNP [dm3] 2L_18323688_SNP [dm6]	C	T	1.876e^-5	0.786	INTRON Fas3
2L	1036956	2L_1036956_SNP [dm3] 2L_1036956_SNP [dm6]	T	G	1.886e^-5	0.786	UPSTREAM CG4415 INTRON IA-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	1587504	3R_1587504_SNP [dm3] 3R_5761782_SNP [dm6]	A	G	1.925e^-5	0.786	INTRON CG2082
3L	2121310	3L_2121310_SNP [dm3] 3L_2121310_SNP [dm6]	G	A	2.047e^-5	0.786	INTRON zormin	TF binding site BDTNP1_TFBS_twi
X	15966408	X_15966408_SNP [dm3] X_16072375_SNP [dm6]	T	C	2.080e^-5	0.786	INTRON Nipsnap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13393597	3L_13393597_DEL [dm3] 3L_13400497_DEL [dm6]	AATAG	A	2.086e^-5	0.786	INTRON sens	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25164582	3R_25164582_SNP [dm3] 3R_29338860_SNP [dm6]	C	A	2.122e^-5	0.786	INTERGENIC
2L	16797376	2L_16797376_SNP [dm3] 2L_16797376_SNP [dm6]	G	T	2.126e^-5	0.786	NON_SYNONYMOUS_CODING Ugt36Bb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11471576	3R_11471576_SNP [dm3] 3R_15645854_SNP [dm6]	G	T	2.158e^-5	0.786	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	7073182	2L_7073182_DEL [dm3] 2L_7073182_DEL [dm6]	AA	G	2.184e^-5	0.786	INTRON Pvf2
2L	10133369	2L_10133369_INS [dm3] 2L_10133369_INS [dm6]	C	CGA	2.266e^-5	0.786	INTRON CG44153
X	5540804	X_5540804_SNP [dm3] X_5646771_SNP [dm6]	T	G	2.277e^-5	0.786	INTRON CG42492
3L	12512236	3L_12512236_SNP [dm3] 3L_12519136_SNP [dm6]	T	C	2.288e^-5	0.786	INTRON tral	TF binding site mE1_TFBS_HSA
2L	7440872	2L_7440872_SNP [dm3] 2L_7440872_SNP [dm6]	C	T	2.336e^-5	0.786	START_GAINED CG5973 UTR_5_PRIME CG5973 INTRON CG5973
3L	2537301	3L_2537301_SNP [dm3] 3L_2537301_SNP [dm6]	G	A	2.380e^-5	0.786	UPSTREAM Spn INTRON Spn	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	18628754	2L_18628754_DEL [dm3] 2L_18628754_DEL [dm6]	TAGGTGATCGAATCT...	T	2.393e^-5	0.786	INTRON MESR3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	13237948	X_13237948_DEL [dm3] X_13343915_DEL [dm6]	ATT	A	2.398e^-5	0.786	DOWNSTREAM CR45708 INTERGENIC
2L	18340460	2L_18340460_SNP [dm3] 2L_18340460_SNP [dm6]	G	A	2.473e^-5	0.786	INTRON Fas3
X	16561937	X_16561937_SNP [dm3] X_16667904_SNP [dm6]	C	A	2.524e^-5	0.786	DOWNSTREAM CG13012 INTRON r	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	5969749	X_5969749_SNP [dm3] X_6075716_SNP [dm6]	C	A	2.563e^-5	0.786	UPSTREAM Tsp5D DOWNSTREAM CG4666 INTERGENIC
3R	10873747	3R_10873747_SNP [dm3] 3R_15048025_SNP [dm6]	C	T	2.632e^-5	0.786	INTERGENIC
X	13238047	X_13238047_INS [dm3] X_13344014_INS [dm6]	G	GAGTAAAG	2.650e^-5	0.786	DOWNSTREAM CR45708 INTERGENIC
X	13238055	X_13238055_INS [dm3] X_13344022_INS [dm6]	T	AGAA	2.650e^-5	0.786	DOWNSTREAM CR45708 INTERGENIC
2L	16796049	2L_16796049_INS [dm3] 2L_16796049_INS [dm6]	A	TGAAAAATG	2.681e^-5	0.786	UPSTREAM Ugt36Bb DOWNSTREAM Ugt36Ba INTERGENIC
3L	15874240	3L_15874240_SNP [dm3] 3L_15881140_SNP [dm6]	G	A	2.740e^-5	0.786	INTRON pHCl
3L	2096565	3L_2096565_SNP [dm3] 3L_2096565_SNP [dm6]	C	T	2.782e^-5	0.786	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	13238030	X_13238030_SNP [dm3] X_13343997_SNP [dm6]	T	C	2.786e^-5	0.786	DOWNSTREAM CR45708 INTERGENIC
3R	10873748	3R_10873748_SNP [dm3] 3R_15048026_SNP [dm6]	C	T	2.801e^-5	0.786	INTERGENIC
2L	18323697	2L_18323697_SNP [dm3] 2L_18323697_SNP [dm6]	C	A	2.905e^-5	0.786	INTRON Fas3
3R	21505012	3R_21505012_SNP [dm3] 3R_25679290_SNP [dm6]	C	A	2.939e^-5	0.786	UTR_3_PRIME CG5039 & 1 other UPSTREAM CG4730	TF binding site mE1_TFBS_sens
3L	13393602	3L_13393602_INS [dm3] 3L_13400502_INS [dm6]	T	TTAAGAATC	2.976e^-5	0.786	INTRON sens	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7165884	2L_7165884_SNP [dm3] 2L_7165884_SNP [dm6]	A	C	3.072e^-5	0.786	INTERGENIC
X	16472452	X_16472452_SNP [dm3] X_16578419_SNP [dm6]	G	A	3.173e^-5	0.786	INTRON CanA-14F
3R	21023021	3R_21023021_SNP [dm3] 3R_25197299_SNP [dm6]	G	C	3.175e^-5	0.786	DOWNSTREAM CG13653 & 1 other INTERGENIC
3R	11523851	3R_11523851_SNP [dm3] 3R_15698129_SNP [dm6]	T	G	3.184e^-5	0.786	UPSTREAM CR45636 DOWNSTREAM CG5399 & 1 other INTERGENIC
X	13238015	X_13238015_SNP [dm3] X_13343982_SNP [dm6]	T	G	3.258e^-5	0.786	DOWNSTREAM CR45708 INTERGENIC
3L	5799379	3L_5799379_SNP [dm3] 3L_5806279_SNP [dm6]	T	C	3.315e^-5	0.786	DOWNSTREAM CG42272 INTRON S6k	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	3477424	2R_3477424_SNP [dm3] 2R_7589919_SNP [dm6]	A	G	3.342e^-5	0.786	UPSTREAM scra INTRON CG1360	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8011131	3L_8011131_SNP [dm3] 3L_8018031_SNP [dm6]	T	A	3.355e^-5	0.786	INTRON nmo
3R	8188356	3R_8188356_SNP [dm3] 3R_12362634_SNP [dm6]	A	G	3.369e^-5	0.786	SYNONYMOUS_CODING CG4115 UPSTREAM snmRNA:419
2R	6061185	2R_6061185_SNP [dm3] 2R_10173680_SNP [dm6]	G	A	3.379e^-5	0.786	INTRON KCNQ
X	6261382	X_6261382_SNP [dm3] X_6367349_SNP [dm6]	G	T	3.432e^-5	0.786	INTRON Marf
3L	16656882	3L_16656882_SNP [dm3] 3L_16663782_SNP [dm6]	C	T	3.494e^-5	0.786	INTRON Galphaf	TF binding site mE1_TFBS_cad
X	13238012	X_13238012_SNP [dm3] X_13343979_SNP [dm6]	C	T	3.499e^-5	0.786	DOWNSTREAM CR45708 INTERGENIC
3R	21411135	3R_21411135_SNP [dm3] 3R_25585413_SNP [dm6]	T	C	3.568e^-5	0.786	INTRON msi
3R	22156572	3R_22156572_SNP [dm3] 3R_26330850_SNP [dm6]	C	T	3.576e^-5	0.786	INTRON CG33970
3R	458350	3R_458350_SNP [dm3] 3R_4632628_SNP [dm6]	A	G	3.648e^-5	0.786	UTR_3_PRIME 5-HT2A INTRON 5-HT2A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	759608	2L_759608_SNP [dm3] 2L_759608_SNP [dm6]	C	A	3.666e^-5	0.786	INTRON GABA-B-R3
3R	419144	3R_419144_SNP [dm3] 3R_4593422_SNP [dm6]	C	T	3.836e^-5	0.786	INTERGENIC
3L	18145889	3L_18145889_DEL [dm3] 3L_18152789_DEL [dm6]	ATTTAAAAAAATATATAAAT...	A	3.901e^-5	0.786	INTRON CG7330
X	13237987	X_13237987_SNP [dm3] X_13343954_SNP [dm6]	T	G	3.989e^-5	0.786	DOWNSTREAM CR45708 INTERGENIC
2L	16800969	2L_16800969_SNP [dm3] 2L_16800969_SNP [dm6]	C	T	4.022e^-5	0.786	SYNONYMOUS_CODING Ugt36Bc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	18628777	2L_18628777_DEL [dm3] 2L_18628777_DEL [dm6]	AA	A	4.055e^-5	0.786	INTRON MESR3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	13393580	3L_13393580_SNP [dm3] 3L_13400480_SNP [dm6]	A	G	4.057e^-5	0.786	INTRON sens	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8762034	3L_8762034_SNP [dm3] 3L_8768934_SNP [dm6]	C	A	4.069e^-5	0.786	INTRON Fhos
2L	16795979	2L_16795979_SNP [dm3] 2L_16795979_SNP [dm6]	A	G	4.108e^-5	0.786	UTR_3_PRIME Ugt36Ba UPSTREAM Ugt36Bb DOWNSTREAM Ugt36Ba
X	13238014	X_13238014_SNP [dm3] X_13343981_SNP [dm6]	C	T	4.132e^-5	0.786	DOWNSTREAM CR45708 INTERGENIC
3R	13763779	3R_13763779_SNP [dm3] 3R_17938057_SNP [dm6]	G	A	4.148e^-5	0.786	INTRON cpo
X	7424473	X_7424473_SNP [dm3] X_7530440_SNP [dm6]	G	T	4.282e^-5	0.786	INTRON CG32719	regulatory region REDfly_CRMs
3L	12512206	3L_12512206_SNP [dm3] 3L_12519106_SNP [dm6]	A	T	4.309e^-5	0.786	INTRON tral	TF binding site mE1_TFBS_HSA
2L	16220378	2L_16220378_SNP [dm3] 2L_16220378_SNP [dm6]	T	A	4.345e^-5	0.786	INTERGENIC
2L	5302341	2L_5302341_SNP [dm3] 2L_5302341_SNP [dm6]	G	A	4.349e^-5	0.786	INTRON vri
X	8380626	X_8380626_SNP [dm3] X_8486593_SNP [dm6]	A	C	4.352e^-5	0.786	NON_SYNONYMOUS_CODING otu	TF binding site mE1_TFBS_chinmo
3L	14062773	3L_14062773_SNP [dm3] 3L_14069673_SNP [dm6]	A	G	4.366e^-5	0.786	INTRON CG32138
2R	18832609	2R_18832609_SNP [dm3] 2R_22945086_SNP [dm6]	G	A	4.391e^-5	0.786	NON_SYNONYMOUS_CODING CG42694	TF binding site mE1_TFBS_sens
3L	2724250	3L_2724250_DEL [dm3] 3L_2724250_DEL [dm6]	CACGTCGATGA...	C	4.394e^-5	0.786	INTRON Mrtf
3R	20425479	3R_20425479_SNP [dm3] 3R_24599757_SNP [dm6]	A	T	4.413e^-5	0.786	INTRON mld	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	10940860	2R_10940860_INS [dm3] 2R_15053355_INS [dm6]	T	TT	4.472e^-5	0.786	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3477493	2R_3477493_SNP [dm3] 2R_7589988_SNP [dm6]	T	A	4.529e^-5	0.786	UTR_5_PRIME CG1360 UPSTREAM scra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21411129	3R_21411129_SNP [dm3] 3R_25585407_SNP [dm6]	A	G	4.540e^-5	0.786	INTRON msi
3R	411649	3R_411649_SNP [dm3] 3R_4585927_SNP [dm6]	T	C	4.556e^-5	0.786	INTRON CR45558
2L	18324698	2L_18324698_SNP [dm3] 2L_18324698_SNP [dm6]	T	A	4.567e^-5	0.786	INTRON Fas3
3R	3483209	3R_3483209_SNP [dm3] 3R_7657487_SNP [dm6]	T	A	4.624e^-5	0.786	UPSTREAM Nlg1 INTERGENIC
3L	9113718	3L_9113718_SNP [dm3] 3L_9120618_SNP [dm6]	T	A	4.630e^-5	0.786	INTRON bol
2R	13581540	2R_13581540_SNP [dm3] 2R_17694035_SNP [dm6]	G	T	4.762e^-5	0.786	INTRON swi2
3L	7061550	3L_7061550_SNP [dm3] 3L_7068450_SNP [dm6]	T	G	4.766e^-5	0.786	DOWNSTREAM CG14823 INTRON CG8641 & 1 other
2L	7073198	2L_7073198_DEL [dm3] 2L_7073198_DEL [dm6]	AG	A	4.772e^-5	0.786	INTRON Pvf2
X	20364886	X_20364886_SNP [dm3] X_20493859_SNP [dm6]	A	T	4.818e^-5	0.786	INTRON RhoGAP19D
X	20364887	X_20364887_SNP [dm3] X_20493860_SNP [dm6]	G	A	4.818e^-5	0.786	INTRON RhoGAP19D
3L	17988299	3L_17988299_SNP [dm3] 3L_17995199_SNP [dm6]	A	G	4.819e^-5	0.786	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	8854869	X_8854869_SNP [dm3] X_8960836_SNP [dm6]	T	C	4.940e^-5	0.786	INTRON rdgA
3R	411653	3R_411653_SNP [dm3] 3R_4585931_SNP [dm6]	A	T	4.947e^-5	0.786	INTRON CR45558
2L	6108551	2L_6108551_SNP [dm3] 2L_6108551_SNP [dm6]	G	A	4.964e^-5	0.786	INTRON stai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	6569957	2R_6569957_SNP [dm3] 2R_10682452_SNP [dm6]	A	T	4.972e^-5	0.786	INTRON stan	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	15013035	3L_15013035_SNP [dm3] 3L_15019935_SNP [dm6]	T	C	4.992e^-5	0.786	INTRON Sytbeta
3R	489121	3R_489121_SNP [dm3] 3R_4663399_SNP [dm6]	C	T	5.012e^-5	0.786	INTRON CG43427	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16303180	2L_16303180_SNP [dm3] 2L_16303180_SNP [dm6]	T	A	5.076e^-5	0.786	UPSTREAM c_2_M & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	15965879	X_15965879_SNP [dm3] X_16071846_SNP [dm6]	C	G	5.134e^-5	0.786	SYNONYMOUS_CODING Nipsnap
X	13237988	X_13237988_SNP [dm3] X_13343955_SNP [dm6]	T	G	5.158e^-5	0.786	DOWNSTREAM CR45708 INTERGENIC
3R	18605978	3R_18605978_SNP [dm3] 3R_22780256_SNP [dm6]	G	C	5.217e^-5	0.786	UPSTREAM CR43654 INTRON CG7029 EXON CR43654	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7827429	2R_7827429_SNP [dm3] 2R_11939924_SNP [dm6]	T	A	5.294e^-5	0.786	UTR_5_PRIME CG13188
3R	13347908	3R_13347908_SNP [dm3] 3R_17522186_SNP [dm6]	A	G	5.311e^-5	0.786	INTERGENIC
X	16554430	X_16554430_SNP [dm3] X_16660397_SNP [dm6]	G	A	5.311e^-5	0.786	SYNONYMOUS_CODING r DOWNSTREAM CG15865	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16796047	2L_16796047_SNP [dm3] 2L_16796047_SNP [dm6]	T	G	5.323e^-5	0.786	UPSTREAM Ugt36Bb DOWNSTREAM Ugt36Ba INTERGENIC
3L	7887874	3L_7887874_DEL [dm3] 3L_7894774_DEL [dm6]	TGCAGTAT	T	5.363e^-5	0.786	UTR_3_PRIME CG32365 UPSTREAM eIF4E-5
X	13237978	X_13237978_SNP [dm3] X_13343945_SNP [dm6]	T	G	5.549e^-5	0.806	DOWNSTREAM CR45708 INTERGENIC
3R	17918534	3R_17918534_SNP [dm3] 3R_22092812_SNP [dm6]	T	G	5.585e^-5	0.806	INTRON CG5778
3L	12021700	3L_12021700_SNP [dm3] 3L_12028600_SNP [dm6]	C	T	5.798e^-5	0.816	DOWNSTREAM CR43994 INTRON rols
3L	2577137	3L_2577137_SNP [dm3] 3L_2577137_SNP [dm6]	T	C	5.812e^-5	0.816	INTRON msn	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7165918	2L_7165918_SNP [dm3] 2L_7165918_SNP [dm6]	C	T	5.846e^-5	0.816	INTERGENIC
2L	7165927	2L_7165927_SNP [dm3] 2L_7165927_SNP [dm6]	A	G	5.846e^-5	0.816	INTERGENIC
2R	18590644	2R_18590644_SNP [dm3] 2R_22703139_SNP [dm6]	T	C	5.902e^-5	0.816	INTRON CG30259 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16303408	2L_16303408_SNP [dm3] 2L_16303408_SNP [dm6]	G	C	6.012e^-5	0.816	SYNONYMOUS_CODING c_2_M UPSTREAM CG5869	TF binding site BDTNP1_TFBS_dl
X	15966303	X_15966303_SNP [dm3] X_16072270_SNP [dm6]	G	A	6.071e^-5	0.816	INTRON Nipsnap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13369904	3L_13369904_SNP [dm3] 3L_13376804_SNP [dm6]	T	A	6.274e^-5	0.816	INTERGENIC
3L	14212183	3L_14212183_SNP [dm3] 3L_14219083_SNP [dm6]	A	G	6.334e^-5	0.816	UPSTREAM nuf DOWNSTREAM CG7768 INTRON nuf
2L	7115035	2L_7115035_SNP [dm3] 2L_7115035_SNP [dm6]	A	G	6.349e^-5	0.816	INTRON Pvf3
3R	3486706	3R_3486706_SNP [dm3] 3R_7660984_SNP [dm6]	A	T	6.373e^-5	0.816	INTRON Nlg1
X	13195049	X_13195049_SNP [dm3] X_13301016_SNP [dm6]	G	A	6.375e^-5	0.816	INTRON CG1764
3L	8390543	3L_8390543_SNP [dm3] 3L_8397443_SNP [dm6]	T	C	6.409e^-5	0.816	UPSTREAM CG7120 INTRON CG7120	transposable element FlyBase
3L	9161155	3L_9161155_SNP [dm3] 3L_9168055_SNP [dm6]	A	T	6.409e^-5	0.816	INTRON Rdl
3L	8300383	3L_8300383_INS [dm3] 3L_8307283_INS [dm6]	C	CAGCC	6.448e^-5	0.816	UTR_3_PRIME BI-1 UPSTREAM Gr66a	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2R	9319860	2R_9319860_SNP [dm3] 2R_13432355_SNP [dm6]	T	G	6.541e^-5	0.816	UPSTREAM tRNA:L3:49Fb & 1 other DOWNSTREAM tRNA:I:49Fc & 2 others INTRON CG42321	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu
2L	12457614	2L_12457614_SNP [dm3] 2L_12457614_SNP [dm6]	C	A	6.566e^-5	0.816	UTR_3_PRIME bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18346268	2L_18346268_SNP [dm3] 2L_18346268_SNP [dm6]	G	A	6.626e^-5	0.816	INTRON Fas3
2L	7041011	2L_7041011_SNP [dm3] 2L_7041011_SNP [dm6]	A	T	6.674e^-5	0.816	SYNONYMOUS_CODING milt
3R	10199211	3R_10199211_SNP [dm3] 3R_14373489_SNP [dm6]	A	C	6.682e^-5	0.816	UPSTREAM NK7.1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	9543573	3R_9543573_SNP [dm3] 3R_13717851_SNP [dm6]	T	C	6.687e^-5	0.816	SYNONYMOUS_CODING CG9602 INTRON CG34383	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2537423	3L_2537423_DEL [dm3] 3L_2537423_DEL [dm6]	AGGAGCGACCAAAATCGAGA...	A	6.687e^-5	0.816	UPSTREAM Spn INTRON Spn	TF binding site mE1_TFBS_Trl
2R	9319708	2R_9319708_SNP [dm3] 2R_13432203_SNP [dm6]	T	C	6.722e^-5	0.816	UPSTREAM tRNA:L3:49Fb & 1 other DOWNSTREAM tRNA:I:49Fc & 2 others INTRON CG42321	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu
2L	16797437	2L_16797437_SNP [dm3] 2L_16797437_SNP [dm6]	G	C	6.780e^-5	0.816	NON_SYNONYMOUS_CODING Ugt36Bb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7636490	X_7636490_SNP [dm3] X_7742457_SNP [dm6]	T	C	6.801e^-5	0.816	INTERGENIC
X	4374425	X_4374425_SNP [dm3] X_4480392_SNP [dm6]	G	A	6.888e^-5	0.816	INTRON CR32773 & 1 other
3L	15991042	3L_15991042_SNP [dm3] 3L_15997942_SNP [dm6]	T	G	6.968e^-5	0.816	INTRON CG5830
3L	7061303	3L_7061303_SNP [dm3] 3L_7068203_SNP [dm6]	C	T	7.001e^-5	0.816	SYNONYMOUS_CODING CG14823 UTR_3_PRIME CG14823 DOWNSTREAM CG32391 INTRON CG8641
3R	11524474	3R_11524474_SNP [dm3] 3R_15698752_SNP [dm6]	T	C	7.095e^-5	0.816	DOWNSTREAM CR45635 & 1 other INTERGENIC
3L	7868594	3L_7868594_SNP [dm3] 3L_7875494_SNP [dm6]	T	A	7.106e^-5	0.816	INTRON CG32365	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	16793132	2L_16793132_SNP [dm3] 2L_16793132_SNP [dm6]	T	C	7.156e^-5	0.816	SYNONYMOUS_CODING CG17928
3L	18217450	3L_18217450_SNP [dm3] 3L_18224350_SNP [dm6]	A	C	7.200e^-5	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	8837174	3L_8837174_SNP [dm3] 3L_8844074_SNP [dm6]	T	A	7.303e^-5	0.816	INTRON dally
2L	7364985	2L_7364985_SNP [dm3] 2L_7364985_SNP [dm6]	A	G	7.336e^-5	0.816	NON_SYNONYMOUS_CODING Wnt10
3L	13093560	3L_13093560_SNP [dm3] 3L_13100460_SNP [dm6]	A	G	7.363e^-5	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	7602626	X_7602626_SNP [dm3] X_7708593_SNP [dm6]	T	A	7.453e^-5	0.816	DOWNSTREAM CR43287 INTRON CHES-1-like	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	6727199	3L_6727199_SNP [dm3] 3L_6734099_SNP [dm6]	C	T	7.461e^-5	0.816	SYNONYMOUS_CODING dikar	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	969293	3L_969293_SNP [dm3] 3L_969293_SNP [dm6]	A	T	7.476e^-5	0.816	INTRON Glut1	TF binding site mE1_TFBS_cad
3L	2275507	3L_2275507_DEL [dm3] 3L_2275507_DEL [dm6]	CC	C	7.487e^-5	0.816	INTERGENIC
3R	13294566	3R_13294566_SNP [dm3] 3R_17468844_SNP [dm6]	T	G	7.578e^-5	0.816	INTERGENIC
2L	4641853	2L_4641853_SNP [dm3] 2L_4641853_SNP [dm6]	A	T	7.605e^-5	0.816	SYNONYMOUS_CODING BG642163	TF binding site mE1_TFBS_sens
X	319830	X_319830_DEL [dm3] X_425797_DEL [dm6]	TT	T	7.607e^-5	0.816	INTRON CG32816
X	15966466	X_15966466_SNP [dm3] X_16072433_SNP [dm6]	C	T	7.646e^-5	0.816	INTRON Nipsnap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5583785	X_5583785_SNP [dm3] X_5689752_SNP [dm6]	G	A	7.717e^-5	0.816	UPSTREAM cv & 1 other DOWNSTREAM CR45525 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	11528451	3R_11528451_SNP [dm3] 3R_15702729_SNP [dm6]	C	T	7.730e^-5	0.816	INTERGENIC
3R	25521633	3R_25521633_SNP [dm3] 3R_29695911_SNP [dm6]	C	T	7.789e^-5	0.816	SYNONYMOUS_CODING dmrt99B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8712147	X_8712147_DEL [dm3] X_8818114_DEL [dm6]	TGT	T	7.883e^-5	0.816	INTERGENIC
X	5388395	X_5388395_SNP [dm3] X_5494362_SNP [dm6]	A	G	7.895e^-5	0.816	SYNONYMOUS_CODING frma DOWNSTREAM SPR
2L	6108542	2L_6108542_SNP [dm3] 2L_6108542_SNP [dm6]	T	G	7.905e^-5	0.816	INTRON stai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	7025608	2L_7025608_SNP [dm3] 2L_7025608_SNP [dm6]	T	C	7.926e^-5	0.816	SYNONYMOUS_CODING CG31908	TF binding site mE1_TFBS_cad
2L	584165	2L_584165_SNP [dm3] 2L_584165_SNP [dm6]	G	A	7.963e^-5	0.816	UTR_3_PRIME Gsc
3L	8762087	3L_8762087_INS [dm3] 3L_8768987_INS [dm6]	T	TGC	7.978e^-5	0.816	INTRON Fhos
3R	15659020	3R_15659020_SNP [dm3] 3R_19833298_SNP [dm6]	G	C	7.986e^-5	0.816	INTRON bnl
3L	3022830	3L_3022830_INS [dm3] 3L_3022830_INS [dm6]	T	TT	8.035e^-5	0.816	INTERGENIC
3R	13347311	3R_13347311_SNP [dm3] 3R_17521589_SNP [dm6]	C	G	8.047e^-5	0.816	INTERGENIC
3L	3022826	3L_3022826_SNP [dm3] 3L_3022826_SNP [dm6]	A	C	8.227e^-5	0.826	INTERGENIC
3L	16684618	3L_16684618_SNP [dm3] 3L_16691518_SNP [dm6]	C	T	8.233e^-5	0.826	INTRON Lasp & 2 others
3R	25554696	3R_25554696_SNP [dm3] 3R_29728974_SNP [dm6]	G	T	8.407e^-5	0.835	SYNONYMOUS_CODING Kul	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	5583662	X_5583662_SNP [dm3] X_5689629_SNP [dm6]	C	A	8.440e^-5	0.835	UPSTREAM cv & 1 other DOWNSTREAM CR45525 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
X	16995743	X_16995743_DEL [dm3] X_17101710_DEL [dm6]	GTTTT	G	8.477e^-5	0.835	UPSTREAM CG4991 INTRON CG4991
X	7609924	X_7609924_SNP [dm3] X_7715891_SNP [dm6]	T	A	8.565e^-5	0.835	UPSTREAM CG15478 INTRON CG15478
3L	7061390	3L_7061390_SNP [dm3] 3L_7068290_SNP [dm6]	T	G	8.734e^-5	0.835	SYNONYMOUS_CODING CG32391 DOWNSTREAM CG14823 INTRON CG8641
3L	8577373	3L_8577373_SNP [dm3] 3L_8584273_SNP [dm6]	C	T	8.767e^-5	0.835	INTRON CG43078
2R	6784181	2R_6784181_SNP [dm3] 2R_10896676_SNP [dm6]	C	T	8.823e^-5	0.835	DOWNSTREAM CG7712 INTRON CG12942	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	8105872	3R_8105872_SNP [dm3] 3R_12280150_SNP [dm6]	G	A	9.036e^-5	0.835	UPSTREAM svp INTRON svp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	13266687	3L_13266687_SNP [dm3] 3L_13273587_SNP [dm6]	A	G	9.114e^-5	0.835	INTRON caps
3L	14060492	3L_14060492_SNP [dm3] 3L_14067392_SNP [dm6]	T	C	9.150e^-5	0.835	SYNONYMOUS_CODING CG32138
3L	4701235	3L_4701235_SNP [dm3] 3L_4701235_SNP [dm6]	T	C	9.186e^-5	0.835	INTRON RhoGEF64C
3L	8738774	3L_8738774_SNP [dm3] 3L_8745674_SNP [dm6]	T	C	9.209e^-5	0.835	UPSTREAM Prm INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	17449945	2R_17449945_SNP [dm3] 2R_21562440_SNP [dm6]	A	G	9.245e^-5	0.835	INTRON CG10440
X	18180596	X_18180596_SNP [dm3] X_18286563_SNP [dm6]	T	A	9.304e^-5	0.835	INTERGENIC
3L	4710289	3L_4710289_SNP [dm3] 3L_4710289_SNP [dm6]	C	T	9.334e^-5	0.835	UPSTREAM CG13712 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5696125	3R_5696125_SNP [dm3] 3R_9870403_SNP [dm6]	G	A	9.350e^-5	0.835	INTERGENIC
X	13521071	X_13521071_SNP [dm3] X_13627038_SNP [dm6]	A	G	9.376e^-5	0.835	INTRON NFAT	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13266692	3L_13266692_SNP [dm3] 3L_13273592_SNP [dm6]	A	G	9.389e^-5	0.835	INTRON caps
3L	11571219	3L_11571219_SNP [dm3] 3L_11578119_SNP [dm6]	C	A	9.394e^-5	0.835	UPSTREAM CG33271 DOWNSTREAM CG33270 INTERGENIC
3R	11524732	3R_11524732_SNP [dm3] 3R_15699010_SNP [dm6]	A	T	9.399e^-5	0.835	DOWNSTREAM CR45636 INTERGENIC
3L	7061557	3L_7061557_SNP [dm3] 3L_7068457_SNP [dm6]	C	T	9.403e^-5	0.835	DOWNSTREAM CG14823 INTRON CG8641 & 1 other
X	16775746	X_16775746_SNP [dm3] X_16881713_SNP [dm6]	G	C	9.434e^-5	0.835	NON_SYNONYMOUS_CODING CG4872 DOWNSTREAM CG9104	TF binding site mE1_TFBS_chinmo
X	16775781	X_16775781_SNP [dm3] X_16881748_SNP [dm6]	G	T	9.434e^-5	0.835	SYNONYMOUS_CODING CG4872 DOWNSTREAM CG9104	TF binding site mE1_TFBS_chinmo
3L	5639211	3L_5639211_SNP [dm3] 3L_5646111_SNP [dm6]	C	T	9.479e^-5	0.835	NON_SYNONYMOUS_CODING Blimp-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6784154	2R_6784154_SNP [dm3] 2R_10896649_SNP [dm6]	C	A	9.497e^-5	0.835	DOWNSTREAM CG7712 INTRON CG12942	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	8105875	3R_8105875_SNP [dm3] 3R_12280153_SNP [dm6]	A	G	9.553e^-5	0.835	UPSTREAM svp INTRON svp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	16678283	2R_16678283_SNP [dm3] 2R_20790778_SNP [dm6]	G	C	9.584e^-5	0.835	NON_SYNONYMOUS_CODING CG43677 UPSTREAM CG43667 DOWNSTREAM CG43668
3L	1869969	3L_1869969_SNP [dm3] 3L_1869969_SNP [dm6]	A	G	9.596e^-5	0.835	UPSTREAM CG13924 DOWNSTREAM CG12025 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	20906526	2R_20906526_DEL [dm3] 2R_25019003_DEL [dm6]	ACCATTTGTTAA...	A	9.669e^-5	0.835	INTRON uzip	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_HSA
X	8599459	X_8599459_SNP [dm3] X_8705426_SNP [dm6]	A	G	9.840e^-5	0.835	INTERGENIC
3R	521051	3R_521051_SNP [dm3] 3R_4695329_SNP [dm6]	T	G	9.848e^-5	0.835	INTRON CG43427
3R	540436	3R_540436_SNP [dm3] 3R_4714714_SNP [dm6]	T	C	9.881e^-5	0.835	UPSTREAM CG9769 INTERGENIC	transposable element FlyBase
3L	14175488	3L_14175488_SNP [dm3] 3L_14182388_SNP [dm6]	C	T	9.939e^-5	0.835	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	24078329	3R_24078329_SNP [dm3] 3R_28252607_SNP [dm6]	C	A	9.978e^-5	0.835	INTERGENIC
X	20848088	X_20848088_SNP [dm3] X_20977061_SNP [dm6]	G	A	1.005e^-4	0.835	INTERGENIC
X	15966057	X_15966057_SNP [dm3] X_16072024_SNP [dm6]	T	C	1.010e^-4	0.835	INTRON Nipsnap	TF binding site BDTNP1_TFBS_dl
3L	13271290	3L_13271290_SNP [dm3] 3L_13278190_SNP [dm6]	G	A	1.010e^-4	0.835	UTR_3_PRIME caps
X	5583569	X_5583569_SNP [dm3] X_5689536_SNP [dm6]	T	C	1.018e^-4	0.835	UPSTREAM cv & 1 other DOWNSTREAM CR45525 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
X	20303957	X_20303957_DEL [dm3] X_20432930_DEL [dm6]	CACTTTACATC...	C	1.019e^-4	0.835	UTR_3_PRIME mal
X	5583854	X_5583854_SNP [dm3] X_5689821_SNP [dm6]	T	A	1.023e^-4	0.835	UPSTREAM cv & 1 other DOWNSTREAM CR45525 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
X	15099533	X_15099533_SNP [dm3] X_15205500_SNP [dm6]	C	T	1.039e^-4	0.835	DOWNSTREAM CG32588 INTERGENIC
2L	16302813	2L_16302813_SNP [dm3] 2L_16302813_SNP [dm6]	T	G	1.039e^-4	0.835	UTR_5_PRIME CG5869 UPSTREAM c_2_M	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA
2R	10144363	2R_10144363_SNP [dm3] 2R_14256858_SNP [dm6]	T	C	1.041e^-4	0.835	SYNONYMOUS_CODING CG8531 UPSTREAM Hsc70-5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	3438767	3L_3438767_SNP [dm3] 3L_3438767_SNP [dm6]	A	T	1.045e^-4	0.835	INTRON eIF5B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3272176	3L_3272176_SNP [dm3] 3L_3272176_SNP [dm6]	G	C	1.048e^-4	0.835	INTRON CG14960	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	7424468	X_7424468_SNP [dm3] X_7530435_SNP [dm6]	T	A	1.070e^-4	0.835	INTRON CG32719	regulatory region REDfly_CRMs
2L	16795863	2L_16795863_SNP [dm3] 2L_16795863_SNP [dm6]	C	T	1.089e^-4	0.835	UTR_3_PRIME Ugt36Ba UPSTREAM Ugt36Bb DOWNSTREAM Ugt36Ba
X	5583955	X_5583955_SNP [dm3] X_5689922_SNP [dm6]	G	A	1.100e^-4	0.835	UPSTREAM cv & 1 other EXON CR45525	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	14062767	3L_14062767_SNP [dm3] 3L_14069667_SNP [dm6]	C	A	1.102e^-4	0.835	INTRON CG32138
3R	11089630	3R_11089630_SNP [dm3] 3R_15263908_SNP [dm6]	G	A	1.104e^-4	0.835	SYNONYMOUS_CODING Set UPSTREAM eIF-2gamma & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2R	11052876	2R_11052876_SNP [dm3] 2R_15165371_SNP [dm6]	T	C	1.105e^-4	0.835	INTRON igl
X	2611361	X_2611361_SNP [dm3] X_2717328_SNP [dm6]	C	A	1.106e^-4	0.835	UTR_3_PRIME CG2694 DOWNSTREAM CG2701
3L	21338121	3L_21338121_SNP [dm3] 3L_21345021_SNP [dm6]	T	G	1.117e^-4	0.835	UTR_3_PRIME ebd2 INTRON CG32436	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7005476	X_7005476_SNP [dm3] X_7111443_SNP [dm6]	C	T	1.122e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3L	5801315	3L_5801315_SNP [dm3] 3L_5808215_SNP [dm6]	A	G	1.127e^-4	0.835	INTRON S6k	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3L	5609932	3L_5609932_SNP [dm3] 3L_5616832_SNP [dm6]	G	A	1.140e^-4	0.835	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	6107684	X_6107684_SNP [dm3] X_6213651_SNP [dm6]	C	T	1.145e^-4	0.835	INTERGENIC
X	6261296	X_6261296_SNP [dm3] X_6367263_SNP [dm6]	C	A	1.147e^-4	0.835	INTRON Marf
2L	13010146	2L_13010146_SNP [dm3] 2L_13010146_SNP [dm6]	G	A	1.153e^-4	0.835	SYNONYMOUS_CODING Tor	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	13010605	2L_13010605_SNP [dm3] 2L_13010605_SNP [dm6]	C	T	1.153e^-4	0.835	SYNONYMOUS_CODING Tor	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	21206836	3R_21206836_SNP [dm3] 3R_25381114_SNP [dm6]	C	T	1.157e^-4	0.835	UTR_3_PRIME alrm INTRON Fur1
2R	4193324	2R_4193324_SNP [dm3] 2R_8305819_SNP [dm6]	A	G	1.164e^-4	0.835	DOWNSTREAM CR44447 INTERGENIC
3L	11575704	3L_11575704_SNP [dm3] 3L_11582604_SNP [dm6]	G	C	1.173e^-4	0.835	SYNONYMOUS_CODING CG32086 UPSTREAM CG33269
2R	6632408	2R_6632408_SNP [dm3] 2R_10744903_SNP [dm6]	C	T	1.178e^-4	0.835	INTRON CG33144
3L	13257983	3L_13257983_SNP [dm3] 3L_13264883_SNP [dm6]	C	A	1.179e^-4	0.835	INTRON caps
2R	12680864	2R_12680864_SNP [dm3] 2R_16793359_SNP [dm6]	A	G	1.180e^-4	0.835	SYNONYMOUS_CODING CG15615 DOWNSTREAM CG5522 & 1 other
3L	8010854	3L_8010854_SNP [dm3] 3L_8017754_SNP [dm6]	G	A	1.186e^-4	0.835	INTRON nmo
X	20848642	X_20848642_SNP [dm3] X_20977615_SNP [dm6]	T	C	1.194e^-4	0.835	UPSTREAM CG44426 INTERGENIC
X	5921357	X_5921357_SNP [dm3] X_6027324_SNP [dm6]	A	G	1.195e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	12159476	X_12159476_SNP [dm3] X_12265443_SNP [dm6]	C	A	1.198e^-4	0.835	INTRON Ten-a	TF binding site mE1_TFBS_HSA
3R	13347864	3R_13347864_SNP [dm3] 3R_17522142_SNP [dm6]	A	T	1.203e^-4	0.835	INTERGENIC
3R	25522714	3R_25522714_SNP [dm3] 3R_29696992_SNP [dm6]	T	A	1.205e^-4	0.835	UTR_3_PRIME dmrt99B	TF binding site BDTNP1_TFBS_twi
X	13521038	X_13521038_SNP [dm3] X_13627005_SNP [dm6]	T	C	1.205e^-4	0.835	INTRON NFAT	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21526791	3R_21526791_INS [dm3] 3R_25701069_INS [dm6]	A	AA	1.209e^-4	0.835	UTR_3_PRIME LpR2 INTRON LpR2
2L	16340374	2L_16340374_SNP [dm3] 2L_16340374_SNP [dm6]	C	G	1.217e^-4	0.835	UPSTREAM CG42266 DOWNSTREAM CG44405 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12644674	2R_12644674_SNP [dm3] 2R_16757169_SNP [dm6]	T	G	1.221e^-4	0.835	SPLICE_SITE_REGION unc-104 INTRON unc-104
3L	12219177	3L_12219177_SNP [dm3] 3L_12226077_SNP [dm6]	C	T	1.223e^-4	0.835	INTRON app
X	20847299	X_20847299_SNP [dm3] X_20976272_SNP [dm6]	G	A	1.227e^-4	0.835	INTERGENIC
X	13188948	X_13188948_SNP [dm3] X_13294915_SNP [dm6]	T	C	1.228e^-4	0.835	UTR_3_PRIME CG1764 DOWNSTREAM CG15744
2L	16340388	2L_16340388_SNP [dm3] 2L_16340388_SNP [dm6]	G	T	1.230e^-4	0.835	UPSTREAM CG42266 DOWNSTREAM CG44405 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	885492	3R_885492_SNP [dm3] 3R_5059770_SNP [dm6]	A	G	1.230e^-4	0.835	INTERGENIC	TF binding site mE1_TFBS_sens
3R	20539848	3R_20539848_SNP [dm3] 3R_24714126_SNP [dm6]	T	C	1.234e^-4	0.835	UPSTREAM CG13627 INTRON CG13627
X	4348510	X_4348510_SNP [dm3] X_4454477_SNP [dm6]	A	G	1.252e^-4	0.835	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20814517	X_20814517_SNP [dm3] X_20943490_SNP [dm6]	T	G	1.254e^-4	0.835	INTERGENIC
3R	25554720	3R_25554720_SNP [dm3] 3R_29728998_SNP [dm6]	G	A	1.256e^-4	0.835	SYNONYMOUS_CODING Kul	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	16724822	2R_16724822_SNP [dm3] 2R_20837317_SNP [dm6]	G	A	1.269e^-4	0.835	UPSTREAM CR44667 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	5303098	2L_5303098_SNP [dm3] 2L_5303098_SNP [dm6]	G	C	1.269e^-4	0.835	INTRON vri
2L	6108543	2L_6108543_SNP [dm3] 2L_6108543_SNP [dm6]	T	G	1.274e^-4	0.835	INTRON stai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	8678733	X_8678733_SNP [dm3] X_8784700_SNP [dm6]	C	A	1.275e^-4	0.835	INTRON Lim1
X	11534970	X_11534970_SNP [dm3] X_11640937_SNP [dm6]	A	G	1.282e^-4	0.835	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20364934	X_20364934_INS [dm3] X_20493907_INS [dm6]	T	TATA	1.291e^-4	0.835	INTRON RhoGAP19D
3L	5252588	3L_5252588_SNP [dm3] 3L_5259488_SNP [dm6]	T	C	1.292e^-4	0.835	INTRON shep
3L	14059759	3L_14059759_SNP [dm3] 3L_14066659_SNP [dm6]	C	T	1.297e^-4	0.835	SYNONYMOUS_CODING CG32138	TF binding site mE1_TFBS_cad
X	6933763	X_6933763_INS [dm3] X_7039730_INS [dm6]	A	AA	1.319e^-4	0.835	UPSTREAM CG14427 INTRON CG12541	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5639209	3L_5639209_SNP [dm3] 3L_5646109_SNP [dm6]	T	G	1.326e^-4	0.835	SYNONYMOUS_CODING Blimp-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8349120	X_8349120_SNP [dm3] X_8455087_SNP [dm6]	C	T	1.332e^-4	0.835	UPSTREAM org-1 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16806935	2L_16806935_SNP [dm3] 2L_16806935_SNP [dm6]	A	T	1.337e^-4	0.835	UPSTREAM CG13272 INTRON CG13280 & 1 other
2L	18312660	2L_18312660_SNP [dm3] 2L_18312660_SNP [dm6]	C	T	1.337e^-4	0.835	DOWNSTREAM CR44489 INTERGENIC
X	16649929	X_16649929_SNP [dm3] X_16755896_SNP [dm6]	G	A	1.337e^-4	0.835	SYNONYMOUS_CODING if	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	4229666	2L_4229666_DEL [dm3] 2L_4229666_DEL [dm6]	CTTGGAGGCCACGGGCTTGA...	AA	1.337e^-4	0.835	DOWNSTREAM CR44608 INTERGENIC
2L	6308319	2L_6308319_SNP [dm3] 2L_6308319_SNP [dm6]	T	C	1.341e^-4	0.835	UPSTREAM CG13984 DOWNSTREAM CG43922 INTRON Ddr
2L	13357841	2L_13357841_SNP [dm3] 2L_13357841_SNP [dm6]	A	T	1.343e^-4	0.835	INTERGENIC
X	18728259	X_18728259_SNP [dm3] X_18834226_SNP [dm6]	G	T	1.343e^-4	0.835	INTRON Pvf1	TF binding site BDTNP1_TFBS_da
X	7799649	X_7799649_SNP [dm3] X_7905616_SNP [dm6]	G	T	1.352e^-4	0.835	UTR_3_PRIME dpr14 DOWNSTREAM dpr14
X	18728112	X_18728112_SNP [dm3] X_18834079_SNP [dm6]	G	A	1.357e^-4	0.835	INTRON Pvf1
X	7602627	X_7602627_SNP [dm3] X_7708594_SNP [dm6]	C	T	1.366e^-4	0.835	DOWNSTREAM CR43287 INTRON CHES-1-like	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	913674	3L_913674_SNP [dm3] 3L_913674_SNP [dm6]	C	T	1.369e^-4	0.835	UPSTREAM Glut1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20266639	3L_20266639_SNP [dm3] 3L_20273539_SNP [dm6]	G	C	1.370e^-4	0.835	SYNONYMOUS_CODING CG17122 INTRON gogo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3274545	3L_3274545_DEL [dm3] 3L_3274545_DEL [dm6]	ACC	G	1.387e^-4	0.835	INTRON CG14960
2R	9745655	2R_9745655_SNP [dm3] 2R_13858150_SNP [dm6]	T	C	1.388e^-4	0.835	SYNONYMOUS_CODING tum UPSTREAM Uba3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	21338120	3L_21338120_SNP [dm3] 3L_21345020_SNP [dm6]	T	A	1.402e^-4	0.835	UTR_3_PRIME ebd2 INTRON CG32436	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7424483	X_7424483_SNP [dm3] X_7530450_SNP [dm6]	A	T	1.419e^-4	0.835	INTRON CG32719	regulatory region REDfly_CRMs
2L	2394988	2L_2394988_SNP [dm3] 2L_2394988_SNP [dm6]	G	T	1.442e^-4	0.835	INTRON VGlut
2L	16340389	2L_16340389_SNP [dm3] 2L_16340389_SNP [dm6]	T	G	1.448e^-4	0.835	UPSTREAM CG42266 DOWNSTREAM CG44405 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14873592	3R_14873592_SNP [dm3] 3R_19047870_SNP [dm6]	G	A	1.450e^-4	0.835	INTRON cdi
X	20364935	X_20364935_DEL [dm3] X_20493908_DEL [dm6]	TC	T	1.465e^-4	0.835	INTRON RhoGAP19D
3L	7887650	3L_7887650_SNP [dm3] 3L_7894550_SNP [dm6]	G	A	1.470e^-4	0.835	UTR_3_PRIME CG32365 UPSTREAM eIF4E-5	TF binding site mE1_TFBS_cad
3R	3488074	3R_3488074_SNP [dm3] 3R_7662352_SNP [dm6]	C	T	1.478e^-4	0.835	UTR_5_PRIME Nlg1
2L	18753070	2L_18753070_SNP [dm3] 2L_18753070_SNP [dm6]	C	T	1.479e^-4	0.835	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12555420	3L_12555420_INS [dm3] 3L_12562320_INS [dm6]	A	ACTATTAATAATTGCT...	1.482e^-4	0.835	INTRON sowah
X	4606511	X_4606511_SNP [dm3] X_4712478_SNP [dm6]	G	A	1.482e^-4	0.835	INTRON Proc-R
2L	756017	2L_756017_SNP [dm3] 2L_756017_SNP [dm6]	G	A	1.484e^-4	0.835	SYNONYMOUS_CODING GABA-B-R3 UTR_3_PRIME GABA-B-R3
2L	9024369	2L_9024369_SNP [dm3] 2L_9024369_SNP [dm6]	G	C	1.484e^-4	0.835	UTR_3_PRIME CG9582 DOWNSTREAM CG9582
3L	913577	3L_913577_SNP [dm3] 3L_913577_SNP [dm6]	G	A	1.487e^-4	0.835	UPSTREAM Glut1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18917133	2R_18917133_SNP [dm3] 2R_23029610_SNP [dm6]	T	C	1.491e^-4	0.835	INTRON twi & 1 other
3L	22509971	3L_22509971_SNP [dm3] 3L_22516871_SNP [dm6]	C	G	1.491e^-4	0.835	INTERGENIC
3L	12269974	3L_12269974_SNP [dm3] 3L_12276874_SNP [dm6]	T	G	1.492e^-4	0.835	UPSTREAM CG10426 INTRON CG4300	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
X	2880977	X_2880977_SNP [dm3] X_2986944_SNP [dm6]	T	C	1.495e^-4	0.835	INTRON kirre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	6938782	2L_6938782_SNP [dm3] 2L_6938782_SNP [dm6]	T	C	1.503e^-4	0.835	SYNONYMOUS_CODING CG18304	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	16302793	2L_16302793_SNP [dm3] 2L_16302793_SNP [dm6]	G	A	1.503e^-4	0.835	UTR_5_PRIME CG5869 UPSTREAM c_2_M	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA
3L	913667	3L_913667_DEL [dm3] 3L_913667_DEL [dm6]	AA	G	1.507e^-4	0.835	UPSTREAM Glut1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4696286	3L_4696286_SNP [dm3] 3L_4696286_SNP [dm6]	T	G	1.509e^-4	0.835	INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
X	7424479	X_7424479_SNP [dm3] X_7530446_SNP [dm6]	C	T	1.518e^-4	0.835	INTRON CG32719	regulatory region REDfly_CRMs
2L	849885	2L_849885_SNP [dm3] 2L_849885_SNP [dm6]	A	G	1.520e^-4	0.835	UPSTREAM CR44060 INTRON drongo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
X	13236439	X_13236439_SNP [dm3] X_13342406_SNP [dm6]	T	C	1.524e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5891739	X_5891739_SNP [dm3] X_5997706_SNP [dm6]	T	C	1.524e^-4	0.835	UTR_3_PRIME CG4766	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18325633	2L_18325633_SNP [dm3] 2L_18325633_SNP [dm6]	T	A	1.527e^-4	0.835	INTRON Fas3
2R	12644684	2R_12644684_SNP [dm3] 2R_16757179_SNP [dm6]	A	T	1.528e^-4	0.835	INTRON unc-104
2R	12625282	2R_12625282_INS [dm3] 2R_16737777_INS [dm6]	T	TTTAAAA	1.528e^-4	0.835	UTR_5_PRIME CG43104 UPSTREAM CR44464	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7804503	3L_7804503_DEL [dm3] 3L_7811403_DEL [dm6]	TT	T	1.536e^-4	0.835	DOWNSTREAM Pdp1 INTERGENIC
2R	20329032	2R_20329032_SNP [dm3] 2R_24441509_SNP [dm6]	A	G	1.541e^-4	0.835	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	7303274	3L_7303274_SNP [dm3] 3L_7310174_SNP [dm6]	T	C	1.541e^-4	0.835	INTRON unc-13-4A
2L	3119101	2L_3119101_SNP [dm3] 2L_3119101_SNP [dm6]	C	A	1.547e^-4	0.835	INTRON toc
X	17607566	X_17607566_SNP [dm3] X_17713533_SNP [dm6]	T	A	1.548e^-4	0.835	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8417565	3L_8417565_SNP [dm3] 3L_8424465_SNP [dm6]	G	C	1.551e^-4	0.835	UPSTREAM Cbl INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	18231480	3R_18231480_SNP [dm3] 3R_22405758_SNP [dm6]	T	A	1.562e^-4	0.835	UPSTREAM CG13855 DOWNSTREAM CG13856 INTERGENIC
X	13301716	X_13301716_SNP [dm3] X_13407683_SNP [dm6]	G	A	1.564e^-4	0.835	INTRON GstT4
2L	16802270	2L_16802270_SNP [dm3] 2L_16802270_SNP [dm6]	A	C	1.564e^-4	0.835	SYNONYMOUS_CODING CG13280 DOWNSTREAM Ugt36Bc
3R	15606406	3R_15606406_SNP [dm3] 3R_19780684_SNP [dm6]	T	A	1.569e^-4	0.835	UTR_3_PRIME CG11391 UPSTREAM CG11407
3L	449945	3L_449945_SNP [dm3] 3L_449945_SNP [dm6]	T	A	1.571e^-4	0.835	INTRON klar
2L	18875401	2L_18875401_SNP [dm3] 2L_18875401_SNP [dm6]	C	G	1.576e^-4	0.835	INTRON tup	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8007507	3L_8007507_SNP [dm3] 3L_8014407_SNP [dm6]	T	A	1.580e^-4	0.835	INTRON nmo
2R	6699632	2R_6699632_SNP [dm3] 2R_10812127_SNP [dm6]	T	C	1.580e^-4	0.835	UTR_3_PRIME mms4 DOWNSTREAM CG12341	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	25602983	3R_25602983_SNP [dm3] 3R_29777261_SNP [dm6]	G	A	1.582e^-4	0.835	INTRON kay
2R	16696880	2R_16696880_SNP [dm3] 2R_20809375_SNP [dm6]	C	A	1.583e^-4	0.835	INTERGENIC
3R	20761748	3R_20761748_SNP [dm3] 3R_24936026_SNP [dm6]	G	A	1.589e^-4	0.835	SYNONYMOUS_CODING Osbp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16818519	2L_16818519_SNP [dm3] 2L_16818519_SNP [dm6]	A	T	1.590e^-4	0.835	INTRON CG13280 & 1 other	TF binding site mE1_TFBS_cnc
3L	21338123	3L_21338123_SNP [dm3] 3L_21345023_SNP [dm6]	G	T	1.592e^-4	0.835	UTR_3_PRIME ebd2 INTRON CG32436	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11847275	3L_11847275_SNP [dm3] 3L_11854175_SNP [dm6]	T	A	1.603e^-4	0.835	INTRON CG44837
2L	6055094	2L_6055094_SNP [dm3] 2L_6055094_SNP [dm6]	A	G	1.604e^-4	0.835	INTRON CG13995	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18917131	2R_18917131_SNP [dm3] 2R_23029608_SNP [dm6]	A	C	1.605e^-4	0.835	INTRON twi & 1 other
3L	913601	3L_913601_SNP [dm3] 3L_913601_SNP [dm6]	C	T	1.613e^-4	0.835	UPSTREAM Glut1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9674934	2R_9674934_SNP [dm3] 2R_13787429_SNP [dm6]	T	C	1.615e^-4	0.835	UTR_3_PRIME Cpr50Ca
2R	7290649	2R_7290649_SNP [dm3] 2R_11403144_SNP [dm6]	G	T	1.617e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	757678	2L_757678_SNP [dm3] 2L_757678_SNP [dm6]	T	C	1.626e^-4	0.835	DOWNSTREAM GABA-B-R3 INTRON GABA-B-R3
2L	18346246	2L_18346246_SNP [dm3] 2L_18346246_SNP [dm6]	G	T	1.628e^-4	0.835	INTRON Fas3
2R	20320535	2R_20320535_DEL [dm3] 2R_24433012_DEL [dm6]	ATTCAGA	A	1.628e^-4	0.835	UPSTREAM Pgam5-2 INTERGENIC
3L	1658134	3L_1658134_SNP [dm3] 3L_1658134_SNP [dm6]	C	G	1.629e^-4	0.835	NON_SYNONYMOUS_CODING CG7971
2R	11391300	2R_11391300_SNP [dm3] 2R_15503795_SNP [dm6]	T	A	1.641e^-4	0.835	UPSTREAM Ir52c DOWNSTREAM Ir52b INTERGENIC
3L	2122725	3L_2122725_SNP [dm3] 3L_2122725_SNP [dm6]	C	A	1.649e^-4	0.835	UTR_3_PRIME zormin INTRON zormin
3L	14059630	3L_14059630_SNP [dm3] 3L_14066530_SNP [dm6]	G	C	1.655e^-4	0.835	SYNONYMOUS_CODING CG32138	TF binding site mE1_TFBS_cad
3L	12785093	3L_12785093_DEL [dm3] 3L_12791993_DEL [dm6]	TAT	T	1.656e^-4	0.835	INTRON Atg1 & 1 other
3L	3995290	3L_3995290_SNP [dm3] 3L_3995290_SNP [dm6]	C	T	1.660e^-4	0.835	INTERGENIC
2L	1751462	2L_1751462_SNP [dm3] 2L_1751462_SNP [dm6]	G	A	1.672e^-4	0.835	SYNONYMOUS_CODING CG17712 UPSTREAM CG17648 DOWNSTREAM CG17646	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	16942119	2L_16942119_SNP [dm3] 2L_16942119_SNP [dm6]	C	A	1.675e^-4	0.835	INTERGENIC
3R	26723632	3R_26723632_SNP [dm3] 3R_30897910_SNP [dm6]	C	T	1.683e^-4	0.835	SYNONYMOUS_CODING Cyp4c3
2R	6784159	2R_6784159_SNP [dm3] 2R_10896654_SNP [dm6]	T	A	1.691e^-4	0.835	DOWNSTREAM CG7712 INTRON CG12942	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	18590651	2R_18590651_SNP [dm3] 2R_22703146_SNP [dm6]	A	G	1.693e^-4	0.835	INTRON CG30259 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5599661	2L_5599661_SNP [dm3] 2L_5599661_SNP [dm6]	C	A	1.716e^-4	0.835	INTERGENIC	TF binding site mE1_TFBS_cad
X	14043532	X_14043532_SNP [dm3] X_14149499_SNP [dm6]	A	G	1.717e^-4	0.835	INTERGENIC
2L	16340364	2L_16340364_SNP [dm3] 2L_16340364_SNP [dm6]	T	G	1.717e^-4	0.835	UTR_5_PRIME CG42266 DOWNSTREAM CG44405	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	8679003	X_8679003_SNP [dm3] X_8784970_SNP [dm6]	A	G	1.718e^-4	0.835	INTRON Lim1
2L	16796326	2L_16796326_SNP [dm3] 2L_16796326_SNP [dm6]	A	G	1.724e^-4	0.835	UPSTREAM Ugt36Bb DOWNSTREAM Ugt36Ba INTERGENIC
X	20202320	X_20202320_SNP [dm3] X_20331293_SNP [dm6]	T	A	1.731e^-4	0.835	UPSTREAM CG1504 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	18728179	X_18728179_SNP [dm3] X_18834146_SNP [dm6]	T	A	1.734e^-4	0.835	INTRON Pvf1
2R	17862087	2R_17862087_SNP [dm3] 2R_21974582_SNP [dm6]	A	G	1.740e^-4	0.835	SYNONYMOUS_CODING CG9304
X	13237944	X_13237944_SNP [dm3] X_13343911_SNP [dm6]	G	T	1.746e^-4	0.835	DOWNSTREAM CR45708 INTERGENIC
3L	5467143	3L_5467143_SNP [dm3] 3L_5474043_SNP [dm6]	G	T	1.756e^-4	0.835	INTERGENIC
X	13712164	X_13712164_SNP [dm3] X_13818131_SNP [dm6]	A	G	1.760e^-4	0.835	INTRON Clic
2R	6784169	2R_6784169_SNP [dm3] 2R_10896664_SNP [dm6]	A	G	1.761e^-4	0.835	DOWNSTREAM CG7712 INTRON CG12942	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	8141508	3L_8141508_SNP [dm3] 3L_8148408_SNP [dm6]	C	G	1.764e^-4	0.835	INTRON CG13676
3L	13375771	3L_13375771_SNP [dm3] 3L_13382671_SNP [dm6]	A	G	1.764e^-4	0.835	UPSTREAM ImpL1 INTERGENIC
2L	16815770	2L_16815770_SNP [dm3] 2L_16815770_SNP [dm6]	G	A	1.772e^-4	0.835	NON_SYNONYMOUS_CODING CG13272 UPSTREAM mdy INTRON CG13280	TF binding site mE1_TFBS_bab1 mE1_TFBS_Kr mE1_TFBS_sens
2L	8660032	2L_8660032_SNP [dm3] 2L_8660032_SNP [dm6]	G	A	1.776e^-4	0.835	INTRON Sema-1a
2L	1151886	2L_1151886_SNP [dm3] 2L_1151886_SNP [dm6]	A	T	1.777e^-4	0.835	UTR_3_PRIME capt DOWNSTREAM Vps29	TF binding site mE1_TFBS_chinmo mE1_TFBS_sbb
X	12268705	X_12268705_SNP [dm3] X_12374672_SNP [dm6]	A	G	1.778e^-4	0.835	DOWNSTREAM CG2577 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	3971646	2L_3971646_SNP [dm3] 2L_3971646_SNP [dm6]	C	T	1.779e^-4	0.835	INTRON fred
2R	20328273	2R_20328273_SNP [dm3] 2R_24440750_SNP [dm6]	C	T	1.796e^-4	0.835	INTERGENIC
X	6261300	X_6261300_SNP [dm3] X_6367267_SNP [dm6]	T	A	1.797e^-4	0.835	INTRON Marf
X	7861605	X_7861605_SNP [dm3] X_7967572_SNP [dm6]	G	A	1.798e^-4	0.835	UTR_5_PRIME sws INTRON sn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	21468844	3R_21468844_SNP [dm3] 3R_25643122_SNP [dm6]	T	A	1.801e^-4	0.835	INTRON jigr1
2L	761236	2L_761236_SNP [dm3] 2L_761236_SNP [dm6]	A	T	1.809e^-4	0.835	UTR_3_PRIME GABA-B-R3
3L	7061225	3L_7061225_SNP [dm3] 3L_7068125_SNP [dm6]	G	C	1.814e^-4	0.835	NON_SYNONYMOUS_CODING CG14823 UTR_3_PRIME CG14823 DOWNSTREAM CG32391 INTRON CG8641
2L	11348435	2L_11348435_SNP [dm3] 2L_11348435_SNP [dm6]	T	A	1.820e^-4	0.835	INTERGENIC
3L	15874262	3L_15874262_SNP [dm3] 3L_15881162_SNP [dm6]	T	A	1.827e^-4	0.835	INTRON pHCl
3R	7976205	3R_7976205_SNP [dm3] 3R_12150483_SNP [dm6]	G	T	1.835e^-4	0.835	NON_SYNONYMOUS_CODING dpr15
X	20364170	X_20364170_DEL [dm3] X_20493143_DEL [dm6]	ACCA	A	1.837e^-4	0.835	INTRON RhoGAP19D
3R	25164531	3R_25164531_SNP [dm3] 3R_29338809_SNP [dm6]	G	A	1.841e^-4	0.835	INTERGENIC
3R	11119476	3R_11119476_SNP [dm3] 3R_15293754_SNP [dm6]	A	T	1.848e^-4	0.835	INTRON Tm1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	22920961	3L_22920961_SNP [dm3] 3L_22927861_SNP [dm6]	G	A	1.858e^-4	0.835	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	17336798	2R_17336798_SNP [dm3] 2R_21449293_SNP [dm6]	C	T	1.860e^-4	0.835	INTRON Sdc
2L	16340359	2L_16340359_SNP [dm3] 2L_16340359_SNP [dm6]	T	A	1.862e^-4	0.835	UTR_5_PRIME CG42266 DOWNSTREAM CG44405	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7863623	X_7863623_SNP [dm3] X_7969590_SNP [dm6]	A	G	1.867e^-4	0.835	UPSTREAM sn INTRON sn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
3L	8010692	3L_8010692_SNP [dm3] 3L_8017592_SNP [dm6]	A	T	1.868e^-4	0.835	INTRON nmo
3R	14873331	3R_14873331_SNP [dm3] 3R_19047609_SNP [dm6]	T	A	1.871e^-4	0.835	INTRON cdi	TF binding site mE1_TFBS_cad
X	8387769	X_8387769_SNP [dm3] X_8493736_SNP [dm6]	T	A	1.876e^-4	0.835	INTRON CG33181
3R	18231396	3R_18231396_SNP [dm3] 3R_22405674_SNP [dm6]	A	C	1.883e^-4	0.835	UPSTREAM CG13855 DOWNSTREAM CG13856 INTERGENIC
X	14043516	X_14043516_INS [dm3] X_14149483_INS [dm6]	T	TTT	1.898e^-4	0.835	INTERGENIC
2L	16957419	2L_16957419_SNP [dm3] 2L_16957419_SNP [dm6]	G	A	1.899e^-4	0.835	INTERGENIC
2L	15377755	2L_15377755_SNP [dm3] 2L_15377755_SNP [dm6]	T	C	1.903e^-4	0.835	INTERGENIC
3R	12813295	3R_12813295_SNP [dm3] 3R_16987573_SNP [dm6]	A	T	1.904e^-4	0.835	UTR_5_PRIME CG18622 UPSTREAM CG18622	TF binding site mE1_TFBS_Trl
X	7424484	X_7424484_SNP [dm3] X_7530451_SNP [dm6]	G	T	1.910e^-4	0.835	INTRON CG32719	regulatory region REDfly_CRMs
2L	16012141	2L_16012141_SNP [dm3] 2L_16012141_SNP [dm6]	T	A	1.912e^-4	0.835	INTRON beat-Ic
2R	19342860	2R_19342860_SNP [dm3] 2R_23455337_SNP [dm6]	G	A	1.918e^-4	0.835	INTRON CG43795
X	14043551	X_14043551_SNP [dm3] X_14149518_SNP [dm6]	A	C	1.927e^-4	0.835	INTERGENIC
3L	13077790	3L_13077790_SNP [dm3] 3L_13084690_SNP [dm6]	T	C	1.929e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	18323722	2L_18323722_SNP [dm3] 2L_18323722_SNP [dm6]	T	A	1.943e^-4	0.835	INTRON Fas3
3R	15658996	3R_15658996_SNP [dm3] 3R_19833274_SNP [dm6]	T	C	1.954e^-4	0.835	INTRON bnl
3R	13895431	3R_13895431_SNP [dm3] 3R_18069709_SNP [dm6]	A	G	1.959e^-4	0.835	INTERGENIC
3L	513656	3L_513656_SNP [dm3] 3L_513656_SNP [dm6]	T	A	1.961e^-4	0.835	INTRON klar
3L	6510023	3L_6510023_SNP [dm3] 3L_6516923_SNP [dm6]	G	A	1.962e^-4	0.835	INTRON sfl
X	13236451	X_13236451_SNP [dm3] X_13342418_SNP [dm6]	C	A	1.965e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3460196	2L_3460196_SNP [dm3] 2L_3460196_SNP [dm6]	G	A	1.967e^-4	0.835	SYNONYMOUS_CODING Sec5 DOWNSTREAM CG3246	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12555414	3L_12555414_SNP [dm3] 3L_12562314_SNP [dm6]	T	A	1.967e^-4	0.835	INTRON sowah
3R	2848898	3R_2848898_SNP [dm3] 3R_7023176_SNP [dm6]	C	T	1.989e^-4	0.835	INTERGENIC
X	6261364	X_6261364_SNP [dm3] X_6367331_SNP [dm6]	G	A	1.989e^-4	0.835	INTRON Marf
2L	18311387	2L_18311387_SNP [dm3] 2L_18311387_SNP [dm6]	G	T	1.997e^-4	0.835	DOWNSTREAM CR44695 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	13629622	2L_13629622_SNP [dm3] 2L_13629622_SNP [dm6]	A	T	2.019e^-4	0.835	INTRON kuz
3L	8623934	3L_8623934_SNP [dm3] 3L_8630834_SNP [dm6]	T	A	2.026e^-4	0.835	DOWNSTREAM Cdc6 INTRON Zasp66
3L	7997087	3L_7997087_INS [dm3] 3L_8003987_INS [dm6]	A	AA	2.028e^-4	0.835	INTRON nmo
2R	18590648	2R_18590648_SNP [dm3] 2R_22703143_SNP [dm6]	T	C	2.039e^-4	0.835	INTRON CG30259 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11710683	2R_11710683_INS [dm3] 2R_15823178_INS [dm6]	A	AA	2.043e^-4	0.835	INTRON tun	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16564969	3R_16564969_SNP [dm3] 3R_20739247_SNP [dm6]	A	G	2.058e^-4	0.835	UPSTREAM CG17267 & 1 other DOWNSTREAM cdc2c INTERGENIC
3R	8488201	3R_8488201_SNP [dm3] 3R_12662479_SNP [dm6]	T	G	2.060e^-4	0.835	UPSTREAM CG14395 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	16409469	2R_16409469_SNP [dm3] 2R_20521964_SNP [dm6]	C	T	2.066e^-4	0.835	INTERGENIC
3L	21408319	3L_21408319_SNP [dm3] 3L_21415219_SNP [dm6]	T	C	2.067e^-4	0.835	INTRON rgn
3L	16802493	3L_16802493_SNP [dm3] 3L_16809393_SNP [dm6]	T	C	2.072e^-4	0.835	DOWNSTREAM CG13024 INTRON nudC
X	13301053	X_13301053_SNP [dm3] X_13407020_SNP [dm6]	C	T	2.076e^-4	0.835	INTRON GstT4
2L	8171105	2L_8171105_SNP [dm3] 2L_8171105_SNP [dm6]	C	T	2.086e^-4	0.835	INTRON Piezo
3L	7143243	3L_7143243_SNP [dm3] 3L_7150143_SNP [dm6]	A	T	2.091e^-4	0.835	INTRON corn	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	25164541	3R_25164541_SNP [dm3] 3R_29338819_SNP [dm6]	T	A	2.103e^-4	0.835	INTERGENIC
2L	18301802	2L_18301802_SNP [dm3] 2L_18301802_SNP [dm6]	A	T	2.103e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	12242659	3L_12242659_SNP [dm3] 3L_12249559_SNP [dm6]	T	C	2.103e^-4	0.835	INTRON app	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	11484008	3R_11484008_SNP [dm3] 3R_15658286_SNP [dm6]	T	C	2.111e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	4463309	2L_4463309_SNP [dm3] 2L_4463309_SNP [dm6]	C	A	2.117e^-4	0.835	UTR_5_PRIME CG15443 UPSTREAM CG15436 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	3476728	2R_3476728_INS [dm3] 2R_7589223_INS [dm6]	A	AT	2.131e^-4	0.835	UPSTREAM scra INTRON CG1360	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	7887652	3L_7887652_SNP [dm3] 3L_7894552_SNP [dm6]	A	T	2.141e^-4	0.835	UTR_3_PRIME CG32365 UPSTREAM eIF4E-5	TF binding site mE1_TFBS_cad
2L	16473534	2L_16473534_SNP [dm3] 2L_16473534_SNP [dm6]	A	G	2.145e^-4	0.835	SYNONYMOUS_CODING dac	TF binding site mE1_TFBS_cad
3L	13462673	3L_13462673_SNP [dm3] 3L_13469573_SNP [dm6]	T	G	2.150e^-4	0.835	UPSTREAM CG10089 INTRON CG10089
3R	15519719	3R_15519719_SNP [dm3] 3R_19693997_SNP [dm6]	T	C	2.150e^-4	0.835	INTRON Naam
3L	9092324	3L_9092324_SNP [dm3] 3L_9099224_SNP [dm6]	C	A	2.154e^-4	0.835	UTR_3_PRIME bol
2L	3119210	2L_3119210_SNP [dm3] 2L_3119210_SNP [dm6]	A	C	2.160e^-4	0.835	INTRON toc
2L	16815760	2L_16815760_SNP [dm3] 2L_16815760_SNP [dm6]	G	T	2.165e^-4	0.835	NON_SYNONYMOUS_CODING CG13272 UPSTREAM mdy INTRON CG13280	TF binding site mE1_TFBS_bab1 mE1_TFBS_Kr mE1_TFBS_sens
3L	14477908	3L_14477908_SNP [dm3] 3L_14484808_SNP [dm6]	C	A	2.166e^-4	0.835	INTRON bbg
X	4622661	X_4622661_SNP [dm3] X_4728628_SNP [dm6]	A	G	2.175e^-4	0.835	UTR_3_PRIME Proc-R
2L	18359358	2L_18359358_SNP [dm3] 2L_18359358_SNP [dm6]	C	A	2.178e^-4	0.835	UPSTREAM Acp36DE INTRON Fas3	TF binding site BDTNP1_TFBS_da
3R	21179570	3R_21179570_SNP [dm3] 3R_25353848_SNP [dm6]	G	A	2.180e^-4	0.835	NON_SYNONYMOUS_CODING Fur1 INTRON Fur1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	4622676	X_4622676_SNP [dm3] X_4728643_SNP [dm6]	C	A	2.182e^-4	0.835	UTR_3_PRIME Proc-R
3R	2297605	3R_2297605_SNP [dm3] 3R_6471883_SNP [dm6]	C	A	2.185e^-4	0.835	DOWNSTREAM Neurochondrin INTERGENIC
X	20306287	X_20306287_SNP [dm3] X_20435260_SNP [dm6]	A	G	2.195e^-4	0.835	INTRON CG1695
3R	12273948	3R_12273948_SNP [dm3] 3R_16448226_SNP [dm6]	A	G	2.199e^-4	0.835	INTRON Pak3
2R	16659123	2R_16659123_SNP [dm3] 2R_20771618_SNP [dm6]	A	G	2.200e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	17124471	3L_17124471_SNP [dm3] 3L_17131371_SNP [dm6]	A	G	2.213e^-4	0.835	INTRON Rbp6
2L	15230124	2L_15230124_SNP [dm3] 2L_15230124_SNP [dm6]	G	T	2.217e^-4	0.835	NON_SYNONYMOUS_CODING ZnT35C
3L	2094032	3L_2094032_SNP [dm3] 3L_2094032_SNP [dm6]	A	C	2.223e^-4	0.835	SYNONYMOUS_CODING sls
3L	12053407	3L_12053407_SNP [dm3] 3L_12060307_SNP [dm6]	G	A	2.225e^-4	0.835	INTRON rols	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	12908642	2L_12908642_SNP [dm3] 2L_12908642_SNP [dm6]	A	C	2.227e^-4	0.835	INTERGENIC
3R	20314666	3R_20314666_SNP [dm3] 3R_24488944_SNP [dm6]	C	G	2.229e^-4	0.835	SYNONYMOUS_CODING nAChRalpha2 DOWNSTREAM mir-1017
3L	5609877	3L_5609877_SNP [dm3] 3L_5616777_SNP [dm6]	A	G	2.232e^-4	0.835	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5609921	3L_5609921_SNP [dm3] 3L_5616821_SNP [dm6]	C	T	2.232e^-4	0.835	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16818791	2L_16818791_SNP [dm3] 2L_16818791_SNP [dm6]	A	T	2.233e^-4	0.835	INTRON CG13280 & 1 other	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	15874207	3L_15874207_SNP [dm3] 3L_15881107_SNP [dm6]	T	G	2.237e^-4	0.835	INTRON pHCl
X	10436764	X_10436764_SNP [dm3] X_10542731_SNP [dm6]	A	G	2.240e^-4	0.835	INTRON spri
3L	4701011	3L_4701011_SNP [dm3] 3L_4701011_SNP [dm6]	A	C	2.240e^-4	0.835	INTRON RhoGEF64C
3R	14853110	3R_14853110_SNP [dm3] 3R_19027388_SNP [dm6]	C	A	2.254e^-4	0.835	UTR_5_PRIME NP15.6 INTRON gatA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9720214	3R_9720214_SNP [dm3] 3R_13894492_SNP [dm6]	T	A	2.255e^-4	0.835	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15965963	X_15965963_SNP [dm3] X_16071930_SNP [dm6]	A	T	2.270e^-4	0.835	INTRON Nipsnap	TF binding site BDTNP1_TFBS_dl
3L	16802466	3L_16802466_SNP [dm3] 3L_16809366_SNP [dm6]	G	A	2.278e^-4	0.835	DOWNSTREAM CG13024 INTRON nudC
3L	3889718	3L_3889718_SNP [dm3] 3L_3889718_SNP [dm6]	A	G	2.278e^-4	0.835	INTERGENIC
2R	11375308	2R_11375308_SNP [dm3] 2R_15487803_SNP [dm6]	G	A	2.282e^-4	0.835	SYNONYMOUS_CODING CG12964	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1868346	2R_1868346_SNP [dm3] 2R_5980841_SNP [dm6]	A	T	2.287e^-4	0.835	UPSTREAM mle INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14709224	3L_14709224_SNP [dm3] 3L_14716124_SNP [dm6]	C	G	2.290e^-4	0.835	INTRON ome	regulatory region REDfly_CRMs
2L	18317060	2L_18317060_SNP [dm3] 2L_18317060_SNP [dm6]	G	C	2.297e^-4	0.835	INTERGENIC
3L	2826560	3L_2826560_SNP [dm3] 3L_2826560_SNP [dm6]	G	T	2.302e^-4	0.835	INTRON CG43444
X	7800510	X_7800510_INS [dm3] X_7906477_INS [dm6]	G	GTTG	2.303e^-4	0.835	INTRON dpr14	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	15874199	3L_15874199_SNP [dm3] 3L_15881099_SNP [dm6]	G	A	2.303e^-4	0.835	INTRON pHCl
3R	14124774	3R_14124774_SNP [dm3] 3R_18299052_SNP [dm6]	C	A	2.304e^-4	0.835	UPSTREAM Dlc90F & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	757545	2L_757545_SNP [dm3] 2L_757545_SNP [dm6]	T	G	2.304e^-4	0.835	DOWNSTREAM GABA-B-R3 INTRON GABA-B-R3
2L	757815	2L_757815_SNP [dm3] 2L_757815_SNP [dm6]	C	T	2.304e^-4	0.835	SYNONYMOUS_CODING GABA-B-R3 UTR_3_PRIME GABA-B-R3 DOWNSTREAM GABA-B-R3
2R	20328884	2R_20328884_SNP [dm3] 2R_24441361_SNP [dm6]	A	G	2.306e^-4	0.835	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	15377714	2L_15377714_SNP [dm3] 2L_15377714_SNP [dm6]	C	T	2.306e^-4	0.835	INTERGENIC
3R	5053778	3R_5053778_SNP [dm3] 3R_9228056_SNP [dm6]	C	A	2.316e^-4	0.835	UPSTREAM CR45196 INTRON pum	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	16663111	2L_16663111_SNP [dm3] 2L_16663111_SNP [dm6]	G	A	2.326e^-4	0.835	UTR_3_PRIME CG42389 DOWNSTREAM Trpgamma
2R	10661591	2R_10661591_SNP [dm3] 2R_14774086_SNP [dm6]	A	C	2.327e^-4	0.835	INTRON kn	TF binding site mE1_TFBS_cad
X	9459153	X_9459153_SNP [dm3] X_9565120_SNP [dm6]	T	G	2.330e^-4	0.835	SYNONYMOUS_CODING Cubn	TF binding site mE1_TFBS_HSA
3R	18231449	3R_18231449_SNP [dm3] 3R_22405727_SNP [dm6]	G	A	2.338e^-4	0.835	UPSTREAM CG13855 DOWNSTREAM CG13856 INTERGENIC
2L	18356968	2L_18356968_SNP [dm3] 2L_18356968_SNP [dm6]	A	C	2.351e^-4	0.835	NON_SYNONYMOUS_CODING Acp36DE INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	7863792	X_7863792_SNP [dm3] X_7969759_SNP [dm6]	A	G	2.352e^-4	0.835	SPLICE_SITE_REGION sn UTR_5_PRIME sn INTRON sn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
2L	18315820	2L_18315820_SNP [dm3] 2L_18315820_SNP [dm6]	G	A	2.352e^-4	0.835	INTERGENIC
X	6933747	X_6933747_DEL [dm3] X_7039714_DEL [dm6]	ATCACGCAC	A	2.353e^-4	0.835	UPSTREAM CG14427 INTRON CG12541	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13352536	3L_13352536_SNP [dm3] 3L_13359436_SNP [dm6]	A	T	2.354e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6864316	2R_6864316_SNP [dm3] 2R_10976811_SNP [dm6]	G	C	2.355e^-4	0.835	INTERGENIC
2R	5697831	2R_5697831_SNP [dm3] 2R_9810326_SNP [dm6]	G	A	2.357e^-4	0.835	DOWNSTREAM CG1648 INTERGENIC	TF binding site mE1_TFBS_bab1
2L	5383352	2L_5383352_SNP [dm3] 2L_5383352_SNP [dm6]	T	A	2.359e^-4	0.835	INTERGENIC
X	7651622	X_7651622_SNP [dm3] X_7757589_SNP [dm6]	G	A	2.360e^-4	0.835	INTERGENIC
2L	18347439	2L_18347439_SNP [dm3] 2L_18347439_SNP [dm6]	C	T	2.361e^-4	0.835	INTRON Fas3
X	16648214	X_16648214_SNP [dm3] X_16754181_SNP [dm6]	A	C	2.366e^-4	0.835	SYNONYMOUS_CODING if	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6631950	2R_6631950_SNP [dm3] 2R_10744445_SNP [dm6]	G	A	2.368e^-4	0.835	INTRON CG33144
2L	3119608	2L_3119608_SNP [dm3] 2L_3119608_SNP [dm6]	C	T	2.374e^-4	0.835	INTRON toc
3R	9543513	3R_9543513_SNP [dm3] 3R_13717791_SNP [dm6]	A	G	2.374e^-4	0.835	SYNONYMOUS_CODING CG9602 INTRON CG34383	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	20305993	X_20305993_SNP [dm3] X_20434966_SNP [dm6]	G	T	2.381e^-4	0.835	INTRON CG1695
X	6933740	X_6933740_SNP [dm3] X_7039707_SNP [dm6]	C	T	2.390e^-4	0.835	UPSTREAM CG14427 INTRON CG12541	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14908758	X_14908758_SNP [dm3] X_15014725_SNP [dm6]	A	C	2.393e^-4	0.835	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
3L	3020306	3L_3020306_DEL [dm3] 3L_3020306_DEL [dm6]	CTTATTAACCCA...	C	2.395e^-4	0.835	INTERGENIC
X	13705833	X_13705833_SNP [dm3] X_13811800_SNP [dm6]	A	C	2.406e^-4	0.835	SYNONYMOUS_CODING CG11095 DOWNSTREAM inaE	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	9816564	2R_9816564_SNP [dm3] 2R_13929059_SNP [dm6]	T	C	2.411e^-4	0.835	INTRON shot
3R	8105859	3R_8105859_SNP [dm3] 3R_12280137_SNP [dm6]	T	A	2.413e^-4	0.835	UPSTREAM svp INTRON svp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	8943529	2R_8943529_SNP [dm3] 2R_13056024_SNP [dm6]	A	G	2.425e^-4	0.835	UTR_3_PRIME Drl-2 DOWNSTREAM Drl-2
3R	20328654	3R_20328654_SNP [dm3] 3R_24502932_SNP [dm6]	T	A	2.425e^-4	0.835	INTERGENIC	TF binding site mE1_TFBS_inv
3R	13042255	3R_13042255_SNP [dm3] 3R_17216533_SNP [dm6]	T	C	2.427e^-4	0.835	DOWNSTREAM CG31262 INTERGENIC
3R	22832507	3R_22832507_SNP [dm3] 3R_27006785_SNP [dm6]	G	T	2.428e^-4	0.835	SYNONYMOUS_CODING CG6295 INTRON RYa-R	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	13188298	X_13188298_SNP [dm3] X_13294265_SNP [dm6]	C	A	2.428e^-4	0.835	UTR_3_PRIME CG15744 DOWNSTREAM CG1764
3L	2577159	3L_2577159_SNP [dm3] 3L_2577159_SNP [dm6]	T	C	2.437e^-4	0.835	INTRON msn	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6784186	2R_6784186_SNP [dm3] 2R_10896681_SNP [dm6]	C	A	2.438e^-4	0.835	DOWNSTREAM CG7712 INTRON CG12942	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	18322393	2L_18322393_SNP [dm3] 2L_18322393_SNP [dm6]	G	A	2.449e^-4	0.835	INTRON Fas3
2R	11710693	2R_11710693_SNP [dm3] 2R_15823188_SNP [dm6]	A	T	2.457e^-4	0.835	INTRON tun	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16802481	3L_16802481_SNP [dm3] 3L_16809381_SNP [dm6]	G	C	2.462e^-4	0.835	DOWNSTREAM CG13024 INTRON nudC
3L	2199564	3L_2199564_DEL [dm3] 3L_2199564_DEL [dm6]	CCA	C	2.468e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13311758	3L_13311758_SNP [dm3] 3L_13318658_SNP [dm6]	T	G	2.473e^-4	0.835	INTERGENIC
3L	22223230	3L_22223230_SNP [dm3] 3L_22230130_SNP [dm6]	A	C	2.475e^-4	0.835	INTRON olf413	TF binding site mE1_TFBS_cad
2L	6108560	2L_6108560_SNP [dm3] 2L_6108560_SNP [dm6]	T	A	2.480e^-4	0.835	INTRON stai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	435056	3R_435056_SNP [dm3] 3R_4609334_SNP [dm6]	A	G	2.483e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	8134364	3L_8134364_SNP [dm3] 3L_8141264_SNP [dm6]	A	G	2.485e^-4	0.835	SYNONYMOUS_CODING mus301 DOWNSTREAM CG13676	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7668944	X_7668944_SNP [dm3] X_7774911_SNP [dm6]	T	A	2.498e^-4	0.835	INTERGENIC
3L	453654	3L_453654_DEL [dm3] 3L_453654_DEL [dm6]	GGAG	G	2.503e^-4	0.835	INTRON klar
2L	18502202	2L_18502202_SNP [dm3] 2L_18502202_SNP [dm6]	A	C	2.509e^-4	0.835	INTRON kon	TF binding site BDTNP1_TFBS_prd
2L	15377746	2L_15377746_SNP [dm3] 2L_15377746_SNP [dm6]	A	G	2.516e^-4	0.835	INTERGENIC
3R	16862934	3R_16862934_SNP [dm3] 3R_21037212_SNP [dm6]	A	C	2.541e^-4	0.835	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad
2L	5562511	2L_5562511_SNP [dm3] 2L_5562511_SNP [dm6]	T	G	2.544e^-4	0.835	SYNONYMOUS_CODING GluRIIB	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13399546	3L_13399546_SNP [dm3] 3L_13406446_SNP [dm6]	G	A	2.550e^-4	0.835	INTERGENIC
2L	10715285	2L_10715285_SNP [dm3] 2L_10715285_SNP [dm6]	A	G	2.551e^-4	0.835	INTERGENIC
X	16995751	X_16995751_DEL [dm3] X_17101718_DEL [dm6]	TGATTGTTCTGC...	T	2.551e^-4	0.835	UPSTREAM CG4991 INTRON CG4991
3L	10896881	3L_10896881_SNP [dm3] 3L_10903781_SNP [dm6]	A	C	2.558e^-4	0.835	INTERGENIC
3L	3108410	3L_3108410_SNP [dm3] 3L_3108410_SNP [dm6]	A	C	2.561e^-4	0.835	INTERGENIC
2L	761477	2L_761477_SNP [dm3] 2L_761477_SNP [dm6]	A	T	2.564e^-4	0.835	UTR_3_PRIME GABA-B-R3
2R	15530041	2R_15530041_SNP [dm3] 2R_19642536_SNP [dm6]	A	G	2.567e^-4	0.835	UPSTREAM CG15124 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2L	6108545	2L_6108545_SNP [dm3] 2L_6108545_SNP [dm6]	A	T	2.582e^-4	0.835	INTRON stai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	7861331	X_7861331_INS [dm3] X_7967298_INS [dm6]	A	AA	2.582e^-4	0.835	INTRON sn & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
2R	9606129	2R_9606129_SNP [dm3] 2R_13718624_SNP [dm6]	T	A	2.585e^-4	0.835	INTRON fas	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	3476731	2R_3476731_INS [dm3] 2R_7589226_INS [dm6]	C	CCC	2.592e^-4	0.835	UPSTREAM scra INTRON CG1360	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	15884804	2L_15884804_SNP [dm3] 2L_15884804_SNP [dm6]	T	G	2.597e^-4	0.835	INTERGENIC
X	8678895	X_8678895_SNP [dm3] X_8784862_SNP [dm6]	C	T	2.603e^-4	0.835	INTRON Lim1
2L	16818459	2L_16818459_SNP [dm3] 2L_16818459_SNP [dm6]	C	T	2.606e^-4	0.835	INTRON CG13280 & 1 other	TF binding site mE1_TFBS_cnc
2L	16818463	2L_16818463_SNP [dm3] 2L_16818463_SNP [dm6]	T	C	2.606e^-4	0.835	INTRON CG13280 & 1 other	TF binding site mE1_TFBS_cnc
2L	16818480	2L_16818480_SNP [dm3] 2L_16818480_SNP [dm6]	C	T	2.606e^-4	0.835	INTRON CG13280 & 1 other	TF binding site mE1_TFBS_cnc
2L	16818490	2L_16818490_SNP [dm3] 2L_16818490_SNP [dm6]	T	A	2.606e^-4	0.835	INTRON CG13280 & 1 other	TF binding site mE1_TFBS_cnc
X	7424456	X_7424456_SNP [dm3] X_7530423_SNP [dm6]	T	A	2.633e^-4	0.835	INTRON CG32719	regulatory region REDfly_CRMs
X	5806703	X_5806703_SNP [dm3] X_5912670_SNP [dm6]	A	G	2.639e^-4	0.835	SYNONYMOUS_CODING CG12236 DOWNSTREAM CG12236 & 1 other
3R	9405396	3R_9405396_SNP [dm3] 3R_13579674_SNP [dm6]	C	T	2.643e^-4	0.835	INTERGENIC
2R	9782579	2R_9782579_SNP [dm3] 2R_13895074_SNP [dm6]	G	A	2.652e^-4	0.835	INTRON shot
X	15755542	X_15755542_SNP [dm3] X_15861509_SNP [dm6]	C	T	2.652e^-4	0.835	INTRON Gbeta13F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	3329237	2L_3329237_SNP [dm3] 2L_3329237_SNP [dm6]	T	C	2.659e^-4	0.835	SYNONYMOUS_CODING CG33282
2L	18309842	2L_18309842_SNP [dm3] 2L_18309842_SNP [dm6]	A	T	2.659e^-4	0.835	UPSTREAM CR44695 & 1 other EXON CR44694
X	5957129	X_5957129_SNP [dm3] X_6063096_SNP [dm6]	C	T	2.660e^-4	0.835	SYNONYMOUS_CODING CG5921 INTRON CG5921
3L	7811503	3L_7811503_SNP [dm3] 3L_7818403_SNP [dm6]	G	T	2.664e^-4	0.835	INTRON Pdp1
X	5448578	X_5448578_SNP [dm3] X_5554545_SNP [dm6]	T	C	2.667e^-4	0.835	INTRON Vsx2
2R	16717327	2R_16717327_SNP [dm3] 2R_20829822_SNP [dm6]	T	C	2.668e^-4	0.835	SYNONYMOUS_CODING sktl INTRON insc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	16011162	2L_16011162_SNP [dm3] 2L_16011162_SNP [dm6]	A	T	2.669e^-4	0.835	INTRON beat-Ic
2L	757578	2L_757578_SNP [dm3] 2L_757578_SNP [dm6]	A	T	2.673e^-4	0.835	DOWNSTREAM GABA-B-R3 INTRON GABA-B-R3
3L	13386237	3L_13386237_SNP [dm3] 3L_13393137_SNP [dm6]	G	T	2.674e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
X	18997956	X_18997956_SNP [dm3] X_19103923_SNP [dm6]	A	C	2.681e^-4	0.835	INTERGENIC
2L	18309729	2L_18309729_SNP [dm3] 2L_18309729_SNP [dm6]	A	T	2.686e^-4	0.835	UPSTREAM CR44695 & 1 other EXON CR44694
2R	11882961	2R_11882961_SNP [dm3] 2R_15995456_SNP [dm6]	T	A	2.686e^-4	0.835	SYNONYMOUS_CODING ATPCL	TF binding site mE1_TFBS_chinmo
3L	8008118	3L_8008118_SNP [dm3] 3L_8015018_SNP [dm6]	G	C	2.687e^-4	0.835	INTRON nmo
3R	8174946	3R_8174946_SNP [dm3] 3R_12349224_SNP [dm6]	T	C	2.691e^-4	0.835	SYNONYMOUS_CODING CG10038
X	4606510	X_4606510_SNP [dm3] X_4712477_SNP [dm6]	A	C	2.694e^-4	0.835	INTRON Proc-R
X	7799084	X_7799084_SNP [dm3] X_7905051_SNP [dm6]	T	G	2.697e^-4	0.835	UTR_3_PRIME dpr14 DOWNSTREAM dpr14
3L	14191123	3L_14191123_DEL [dm3] 3L_14198023_DEL [dm6]	AATAAATAAA	A	2.705e^-4	0.835	INTRON nuf
2L	16290791	2L_16290791_SNP [dm3] 2L_16290791_SNP [dm6]	A	T	2.706e^-4	0.835	UTR_3_PRIME pkaap UPSTREAM CG17329
3L	3120307	3L_3120307_SNP [dm3] 3L_3120307_SNP [dm6]	A	G	2.708e^-4	0.835	SYNONYMOUS_CODING prominin-like
X	16658956	X_16658956_SNP [dm3] X_16764923_SNP [dm6]	G	C	2.713e^-4	0.835	INTRON if
3R	15658975	3R_15658975_SNP [dm3] 3R_19833253_SNP [dm6]	G	T	2.713e^-4	0.835	INTRON bnl
3L	16907918	3L_16907918_SNP [dm3] 3L_16914818_SNP [dm6]	A	T	2.713e^-4	0.835	INTRON Lmpt
3L	12219209	3L_12219209_SNP [dm3] 3L_12226109_SNP [dm6]	C	A	2.720e^-4	0.835	INTRON app
X	3287612	X_3287612_SNP [dm3] X_3393579_SNP [dm6]	T	G	2.722e^-4	0.835	INTRON CR44999 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8761897	3L_8761897_SNP [dm3] 3L_8768797_SNP [dm6]	G	A	2.728e^-4	0.835	INTRON Fhos
X	6933730	X_6933730_SNP [dm3] X_7039697_SNP [dm6]	T	C	2.730e^-4	0.835	UPSTREAM CG14427 INTRON CG12541	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23002933	3R_23002933_SNP [dm3] 3R_27177211_SNP [dm6]	G	A	2.730e^-4	0.835	SYNONYMOUS_CODING Ser	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14626824	2R_14626824_SNP [dm3] 2R_18739319_SNP [dm6]	A	G	2.730e^-4	0.835	DOWNSTREAM CG33998 INTRON Hs3st-A EXON CR30121
3L	4739349	3L_4739349_SNP [dm3] 3L_4739349_SNP [dm6]	G	A	2.734e^-4	0.835	INTRON RhoGEF64C
3L	13257938	3L_13257938_DEL [dm3] 3L_13264838_DEL [dm6]	TTAAATGTAATCAAGTGTTT...	T	2.740e^-4	0.835	INTRON caps
2R	7829096	2R_7829096_SNP [dm3] 2R_11941591_SNP [dm6]	G	A	2.741e^-4	0.835	INTRON CG13188
3L	16005005	3L_16005005_SNP [dm3] 3L_16011905_SNP [dm6]	A	G	2.744e^-4	0.835	UPSTREAM mib1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	8545411	2R_8545411_SNP [dm3] 2R_12657906_SNP [dm6]	A	T	2.747e^-4	0.835	SYNONYMOUS_CODING CG8646	TF binding site mE1_TFBS_cad
3L	8011382	3L_8011382_SNP [dm3] 3L_8018282_SNP [dm6]	T	A	2.748e^-4	0.835	INTRON nmo
2R	7138122	2R_7138122_SNP [dm3] 2R_11250617_SNP [dm6]	A	T	2.759e^-4	0.835	SYNONYMOUS_CODING Or47a DOWNSTREAM CG43112
3L	2095240	3L_2095240_SNP [dm3] 3L_2095240_SNP [dm6]	T	G	2.767e^-4	0.835	NON_SYNONYMOUS_CODING sls
2L	16011911	2L_16011911_SNP [dm3] 2L_16011911_SNP [dm6]	A	G	2.775e^-4	0.835	INTRON beat-Ic
2L	4812448	2L_4812448_SNP [dm3] 2L_4812448_SNP [dm6]	G	A	2.776e^-4	0.835	UPSTREAM CR45297 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
X	13187524	X_13187524_SNP [dm3] X_13293491_SNP [dm6]	C	T	2.788e^-4	0.835	SYNONYMOUS_CODING CG15744 DOWNSTREAM CG1764
2L	12577657	2L_12577657_DEL [dm3] 2L_12577657_DEL [dm6]	GAAACAATG	G	2.789e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	21408287	3L_21408287_DEL [dm3] 3L_21415187_DEL [dm6]	GGTCATTTTTTGGGTTTCGT...	T	2.797e^-4	0.835	INTRON rgn
3L	11846199	3L_11846199_DEL [dm3] 3L_11853099_DEL [dm6]	AA	A	2.798e^-4	0.835	INTRON CG44837
X	2611364	X_2611364_SNP [dm3] X_2717331_SNP [dm6]	G	A	2.805e^-4	0.835	UTR_3_PRIME CG2694 DOWNSTREAM CG2701
3L	13131438	3L_13131438_SNP [dm3] 3L_13138338_SNP [dm6]	C	T	2.807e^-4	0.835	INTERGENIC
3R	11964660	3R_11964660_SNP [dm3] 3R_16138938_SNP [dm6]	C	T	2.811e^-4	0.835	INTRON Sb
2L	3119645	2L_3119645_SNP [dm3] 2L_3119645_SNP [dm6]	C	T	2.812e^-4	0.835	INTRON toc
3R	23299833	3R_23299833_SNP [dm3] 3R_27474111_SNP [dm6]	A	G	2.819e^-4	0.835	INTERGENIC
2R	12851310	2R_12851310_SNP [dm3] 2R_16963805_SNP [dm6]	G	A	2.819e^-4	0.835	UPSTREAM CR44376 INTERGENIC
2R	10144429	2R_10144429_SNP [dm3] 2R_14256924_SNP [dm6]	T	G	2.823e^-4	0.835	SYNONYMOUS_CODING CG8531 UPSTREAM Hsc70-5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2R	20565709	2R_20565709_SNP [dm3] 2R_24678186_SNP [dm6]	C	A	2.835e^-4	0.835	INTRON Mmp1	TF binding site mE1_TFBS_HSA
2L	3224658	2L_3224658_SNP [dm3] 2L_3224658_SNP [dm6]	G	A	2.838e^-4	0.835	INTERGENIC
2L	18345905	2L_18345905_SNP [dm3] 2L_18345905_SNP [dm6]	G	A	2.847e^-4	0.835	INTRON Fas3
3L	5801395	3L_5801395_SNP [dm3] 3L_5808295_SNP [dm6]	A	G	2.849e^-4	0.835	INTRON S6k	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3R	8174823	3R_8174823_SNP [dm3] 3R_12349101_SNP [dm6]	T	C	2.854e^-4	0.835	SYNONYMOUS_CODING CG10038
2L	3287391	2L_3287391_SNP [dm3] 2L_3287391_SNP [dm6]	C	A	2.861e^-4	0.835	UPSTREAM CR44485 INTERGENIC
2R	11390114	2R_11390114_SNP [dm3] 2R_15502609_SNP [dm6]	T	G	2.872e^-4	0.835	NON_SYNONYMOUS_CODING Ir52b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	760829	2L_760829_SNP [dm3] 2L_760829_SNP [dm6]	G	C	2.880e^-4	0.835	SYNONYMOUS_CODING GABA-B-R3 UTR_3_PRIME GABA-B-R3	TF binding site mE1_TFBS_chinmo
3L	13261157	3L_13261157_SNP [dm3] 3L_13268057_SNP [dm6]	G	A	2.880e^-4	0.835	INTRON caps
2R	9816578	2R_9816578_DEL [dm3] 2R_13929073_DEL [dm6]	AA	A	2.890e^-4	0.835	INTRON shot
2L	16011108	2L_16011108_SNP [dm3] 2L_16011108_SNP [dm6]	T	G	2.890e^-4	0.835	INTRON beat-Ic
3L	14697914	3L_14697914_SNP [dm3] 3L_14704814_SNP [dm6]	G	A	2.899e^-4	0.835	UPSTREAM CG13476 INTRON ome
2L	16303138	2L_16303138_SNP [dm3] 2L_16303138_SNP [dm6]	C	A	2.902e^-4	0.835	UPSTREAM c_2_M & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	16790169	2L_16790169_SNP [dm3] 2L_16790169_SNP [dm6]	A	T	2.906e^-4	0.835	INTRON Cyt-b5-r
3R	21210202	3R_21210202_SNP [dm3] 3R_25384480_SNP [dm6]	G	T	2.908e^-4	0.835	SYNONYMOUS_CODING CG31437 DOWNSTREAM Fur1 INTRON Fur1
2L	21794643	2L_21794643_SNP [dm3] 2L_21794643_SNP [dm6]	G	A	2.909e^-4	0.835	INTRON CG31612	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	15388873	X_15388873_SNP [dm3] X_15494840_SNP [dm6]	T	C	2.916e^-4	0.835	INTRON Gmap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9750490	2R_9750490_SNP [dm3] 2R_13862985_SNP [dm6]	C	T	2.917e^-4	0.835	SYNONYMOUS_CODING CG13344 UPSTREAM CG16935	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	7131032	X_7131032_SNP [dm3] X_7236999_SNP [dm6]	T	C	2.920e^-4	0.835	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13355666	2R_13355666_SNP [dm3] 2R_17468161_SNP [dm6]	C	T	2.920e^-4	0.835	SYNONYMOUS_CODING Tes	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5252463	3L_5252463_SNP [dm3] 3L_5259363_SNP [dm6]	A	T	2.923e^-4	0.835	INTRON shep
X	7424506	X_7424506_DEL [dm3] X_7530473_DEL [dm6]	AA	A	2.924e^-4	0.835	INTRON CG32719	regulatory region REDfly_CRMs
3L	8837902	3L_8837902_SNP [dm3] 3L_8844802_SNP [dm6]	G	T	2.929e^-4	0.835	INTRON dally
2R	11898373	2R_11898373_SNP [dm3] 2R_16010868_SNP [dm6]	G	A	2.931e^-4	0.835	SYNONYMOUS_CODING CG8388 UPSTREAM CG8389 INTRON CG8389	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	16011337	2L_16011337_SNP [dm3] 2L_16011337_SNP [dm6]	T	C	2.935e^-4	0.835	INTRON beat-Ic
3R	13018566	3R_13018566_SNP [dm3] 3R_17192844_SNP [dm6]	A	G	2.939e^-4	0.835	INTRON Mur89F	TF binding site mE1_TFBS_chinmo
X	4373126	X_4373126_SNP [dm3] X_4479093_SNP [dm6]	C	A	2.945e^-4	0.835	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3R	362463	3R_362463_SNP [dm3] 3R_4536741_SNP [dm6]	G	C	2.945e^-4	0.835	INTRON CG34357
2L	18343930	2L_18343930_SNP [dm3] 2L_18343930_SNP [dm6]	C	T	2.961e^-4	0.835	INTRON Fas3
3L	16684611	3L_16684611_SNP [dm3] 3L_16691511_SNP [dm6]	C	T	2.992e^-4	0.835	INTRON Lasp & 2 others	TF binding site mE1_TFBS_HSA
2L	4817725	2L_4817725_SNP [dm3] 2L_4817725_SNP [dm6]	G	A	2.992e^-4	0.835	SYNONYMOUS_CODING CG3225 DOWNSTREAM mir-4910	TF binding site BDTNP1_TFBS_Med mE1_TFBS_sens
3L	14541567	3L_14541567_SNP [dm3] 3L_14548467_SNP [dm6]	A	G	2.994e^-4	0.835	INTRON CG9238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	16303745	2L_16303745_SNP [dm3] 2L_16303745_SNP [dm6]	T	C	3.012e^-4	0.835	UPSTREAM CG5869 INTRON c_2_M
2R	4090553	2R_4090553_INS [dm3] 2R_8203048_INS [dm6]	A	AGA	3.014e^-4	0.835	INTRON LRP1
2R	11710559	2R_11710559_SNP [dm3] 2R_15823054_SNP [dm6]	C	A	3.014e^-4	0.835	INTRON tun	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8011384	3L_8011384_SNP [dm3] 3L_8018284_SNP [dm6]	A	T	3.019e^-4	0.835	INTRON nmo
3L	16802656	3L_16802656_DEL [dm3] 3L_16809556_DEL [dm6]	TTCTTGC	G	3.020e^-4	0.835	DOWNSTREAM CG13024 INTRON nudC
3R	25407484	3R_25407484_SNP [dm3] 3R_29581762_SNP [dm6]	T	C	3.029e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	15328899	3R_15328899_SNP [dm3] 3R_19503177_SNP [dm6]	T	C	3.030e^-4	0.835	UPSTREAM Dys INTRON Dys	TF binding site mE1_TFBS_Trl
2L	5415403	2L_5415403_SNP [dm3] 2L_5415403_SNP [dm6]	C	T	3.033e^-4	0.835	SYNONYMOUS_CODING H15	TF binding site mE1_TFBS_cad
2R	6794926	2R_6794926_SNP [dm3] 2R_10907421_SNP [dm6]	T	A	3.035e^-4	0.835	INTERGENIC
2R	908226	2R_908226_SNP [dm3] 2R_5020721_SNP [dm6]	C	T	3.036e^-4	0.835	SYNONYMOUS_CODING Ir41a
2L	18356390	2L_18356390_SNP [dm3] 2L_18356390_SNP [dm6]	C	T	3.042e^-4	0.835	SYNONYMOUS_CODING Acp36DE INTRON Fas3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3L	12269982	3L_12269982_SNP [dm3] 3L_12276882_SNP [dm6]	A	C	3.047e^-4	0.835	UPSTREAM CG10426 INTRON CG4300	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	1086102	2L_1086102_SNP [dm3] 2L_1086102_SNP [dm6]	A	G	3.061e^-4	0.835	DOWNSTREAM Atg4a INTRON CG4629	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	18317088	2L_18317088_SNP [dm3] 2L_18317088_SNP [dm6]	C	T	3.062e^-4	0.835	INTERGENIC
2L	759658	2L_759658_SNP [dm3] 2L_759658_SNP [dm6]	G	A	3.065e^-4	0.835	INTRON GABA-B-R3
2L	4203502	2L_4203502_SNP [dm3] 2L_4203502_SNP [dm6]	G	C	3.073e^-4	0.835	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_sens
2L	4470626	2L_4470626_SNP [dm3] 2L_4470626_SNP [dm6]	G	C	3.075e^-4	0.835	INTRON ine	TF binding site mE1_TFBS_cad
2L	3881728	2L_3881728_SNP [dm3] 2L_3881728_SNP [dm6]	A	T	3.079e^-4	0.835	INTRON capu
3R	11510678	3R_11510678_SNP [dm3] 3R_15684956_SNP [dm6]	T	C	3.082e^-4	0.835	INTRON pxb
3R	488993	3R_488993_SNP [dm3] 3R_4663271_SNP [dm6]	C	T	3.086e^-4	0.835	INTRON CG43427	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	10330973	X_10330973_SNP [dm3] X_10436940_SNP [dm6]	C	G	3.087e^-4	0.835	INTRON CG32683
3R	12516171	3R_12516171_SNP [dm3] 3R_16690449_SNP [dm6]	G	T	3.094e^-4	0.835	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	18157340	3R_18157340_SNP [dm3] 3R_22331618_SNP [dm6]	T	G	3.097e^-4	0.835	UPSTREAM CG13862 INTRON CG33721	TF binding site mE1_TFBS_inv
3L	450468	3L_450468_SNP [dm3] 3L_450468_SNP [dm6]	G	T	3.098e^-4	0.835	INTRON klar
3L	19421688	3L_19421688_SNP [dm3] 3L_19428588_SNP [dm6]	A	G	3.106e^-4	0.835	INTERGENIC
3R	12486718	3R_12486718_SNP [dm3] 3R_16660996_SNP [dm6]	C	T	3.108e^-4	0.835	INTRON Ubx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	457024	3L_457024_SNP [dm3] 3L_457024_SNP [dm6]	G	A	3.110e^-4	0.835	INTRON klar	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_sens
X	5529206	X_5529206_SNP [dm3] X_5635173_SNP [dm6]	A	C	3.113e^-4	0.835	INTRON CG42492
2R	13368460	2R_13368460_SNP [dm3] 2R_17480955_SNP [dm6]	A	G	3.113e^-4	0.835	UTR_3_PRIME CG43110 INTRON veil	TF binding site mE1_TFBS_cad
3L	2094525	3L_2094525_SNP [dm3] 3L_2094525_SNP [dm6]	C	T	3.118e^-4	0.835	INTRON sls
3L	12945165	3L_12945165_SNP [dm3] 3L_12952065_SNP [dm6]	C	T	3.137e^-4	0.835	DOWNSTREAM CG10752 INTERGENIC
3R	7636263	3R_7636263_SNP [dm3] 3R_11810541_SNP [dm6]	C	T	3.140e^-4	0.835	UTR_5_PRIME ClC-a	TF binding site mE1_TFBS_cad
X	9833859	X_9833859_SNP [dm3] X_9939826_SNP [dm6]	C	T	3.145e^-4	0.835	INTERGENIC
3L	21340142	3L_21340142_INS [dm3] 3L_21347042_INS [dm6]	T	TT	3.146e^-4	0.835	UTR_5_PRIME ebd2 INTRON CG32436 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3R	15585221	3R_15585221_SNP [dm3] 3R_19759499_SNP [dm6]	A	G	3.148e^-4	0.835	INTRON GluClalpha
3R	3492801	3R_3492801_SNP [dm3] 3R_7667079_SNP [dm6]	C	A	3.154e^-4	0.835	INTRON Nlg1
3R	11520964	3R_11520964_SNP [dm3] 3R_15695242_SNP [dm6]	C	A	3.156e^-4	0.835	UTR_5_PRIME CG5399
2R	7835732	2R_7835732_SNP [dm3] 2R_11948227_SNP [dm6]	T	C	3.157e^-4	0.835	INTRON CG13188
X	6752613	X_6752613_SNP [dm3] X_6858580_SNP [dm6]	T	C	3.160e^-4	0.835	INTRON CG14434	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	9752330	2R_9752330_SNP [dm3] 2R_13864825_SNP [dm6]	T	C	3.174e^-4	0.835	UTR_3_PRIME shot DOWNSTREAM CG13344
2R	12851311	2R_12851311_SNP [dm3] 2R_16963806_SNP [dm6]	C	A	3.175e^-4	0.835	UPSTREAM CR44376 INTERGENIC
2L	3971666	2L_3971666_INS [dm3] 2L_3971666_INS [dm6]	T	TT	3.176e^-4	0.835	INTRON fred
2R	10680880	2R_10680880_SNP [dm3] 2R_14793375_SNP [dm6]	T	A	3.179e^-4	0.835	INTRON kn	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	26576194	3R_26576194_SNP [dm3] 3R_30750472_SNP [dm6]	C	T	3.187e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15388876	X_15388876_SNP [dm3] X_15494843_SNP [dm6]	C	T	3.189e^-4	0.835	INTRON Gmap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15548958	3R_15548958_SNP [dm3] 3R_19723236_SNP [dm6]	G	A	3.193e^-4	0.835	INTERGENIC
3R	11698290	3R_11698290_SNP [dm3] 3R_15872568_SNP [dm6]	A	C	3.195e^-4	0.835	INTRON CG31183
3L	7117790	3L_7117790_SNP [dm3] 3L_7124690_SNP [dm6]	C	T	3.201e^-4	0.835	NON_SYNONYMOUS_CODING msl-3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	22140036	3L_22140036_SNP [dm3] 3L_22146936_SNP [dm6]	G	A	3.203e^-4	0.835	INTRON olf413
2L	15608366	2L_15608366_SNP [dm3] 2L_15608366_SNP [dm6]	G	A	3.209e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	12680868	2R_12680868_SNP [dm3] 2R_16793363_SNP [dm6]	G	A	3.210e^-4	0.835	NON_SYNONYMOUS_CODING CG15615 DOWNSTREAM CG5522 & 1 other
2L	18362410	2L_18362410_DEL [dm3] 2L_18362410_DEL [dm6]	GGCCATG	G	3.212e^-4	0.835	INTRON Fas3
3R	13060071	3R_13060071_INS [dm3] 3R_17234349_INS [dm6]	T	TTT	3.212e^-4	0.835	INTRON beat-IIb
3R	13018521	3R_13018521_SNP [dm3] 3R_17192799_SNP [dm6]	A	T	3.212e^-4	0.835	INTRON Mur89F	TF binding site mE1_TFBS_chinmo
3L	5830080	3L_5830080_INS [dm3] 3L_5836980_INS [dm6]	C	CTAGTCACTAGC...	3.219e^-4	0.835	INTRON vn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	2820915	X_2820915_SNP [dm3] X_2926882_SNP [dm6]	G	A	3.219e^-4	0.835	INTRON kirre & 1 other
2L	15138171	2L_15138171_SNP [dm3] 2L_15138171_SNP [dm6]	G	A	3.221e^-4	0.835	INTERGENIC
3R	13762880	3R_13762880_SNP [dm3] 3R_17937158_SNP [dm6]	G	C	3.224e^-4	0.835	INTRON cpo
3R	22715363	3R_22715363_SNP [dm3] 3R_26889641_SNP [dm6]	A	G	3.232e^-4	0.835	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3R	25474949	3R_25474949_SNP [dm3] 3R_29649227_SNP [dm6]	T	C	3.235e^-4	0.835	INTRON Dop1R2
X	5030118	X_5030118_SNP [dm3] X_5136085_SNP [dm6]	T	C	3.237e^-4	0.835	INTRON rg & 1 other
3L	2093162	3L_2093162_SNP [dm3] 3L_2093162_SNP [dm6]	C	T	3.238e^-4	0.835	INTRON sls
3L	8559458	3L_8559458_SNP [dm3] 3L_8566358_SNP [dm6]	G	T	3.242e^-4	0.835	SYNONYMOUS_CODING rhea UTR_3_PRIME rhea	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	7636264	3R_7636264_SNP [dm3] 3R_11810542_SNP [dm6]	T	A	3.256e^-4	0.835	START_GAINED ClC-a UTR_5_PRIME ClC-a	TF binding site mE1_TFBS_cad
3R	15520634	3R_15520634_SNP [dm3] 3R_19694912_SNP [dm6]	T	C	3.259e^-4	0.835	INTRON Naam
2L	18323728	2L_18323728_SNP [dm3] 2L_18323728_SNP [dm6]	C	T	3.280e^-4	0.835	INTRON Fas3
2L	2603342	2L_2603342_SNP [dm3] 2L_2603342_SNP [dm6]	C	T	3.280e^-4	0.835	INTERGENIC
2R	18592229	2R_18592229_SNP [dm3] 2R_22704724_SNP [dm6]	T	C	3.282e^-4	0.835	SYNONYMOUS_CODING Obp58b UPSTREAM CG30259 DOWNSTREAM Obp59a
X	2606787	X_2606787_SNP [dm3] X_2712754_SNP [dm6]	T	C	3.283e^-4	0.835	NON_SYNONYMOUS_CODING CG2685	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12087886	3L_12087886_SNP [dm3] 3L_12094786_SNP [dm6]	A	G	3.294e^-4	0.835	INTERGENIC
X	7602531	X_7602531_SNP [dm3] X_7708498_SNP [dm6]	A	T	3.299e^-4	0.835	INTRON CHES-1-like & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	8356963	3L_8356963_SNP [dm3] 3L_8363863_SNP [dm6]	A	G	3.299e^-4	0.835	INTERGENIC
3R	13018532	3R_13018532_SNP [dm3] 3R_17192810_SNP [dm6]	T	C	3.302e^-4	0.835	INTRON Mur89F	TF binding site mE1_TFBS_chinmo
2L	13913403	2L_13913403_SNP [dm3] 2L_13913403_SNP [dm6]	A	T	3.303e^-4	0.835	DOWNSTREAM Acyp INTERGENIC	TF binding site mE1_TFBS_cad
3R	18231415	3R_18231415_SNP [dm3] 3R_22405693_SNP [dm6]	G	A	3.322e^-4	0.835	UPSTREAM CG13855 DOWNSTREAM CG13856 INTERGENIC
2R	6820493	2R_6820493_INS [dm3] 2R_10932988_INS [dm6]	A	GC	3.324e^-4	0.835	INTERGENIC
X	11598817	X_11598817_SNP [dm3] X_11704784_SNP [dm6]	T	C	3.331e^-4	0.835	DOWNSTREAM PhKgamma INTRON CG2444	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	14043506	X_14043506_INS [dm3] X_14149473_INS [dm6]	A	AA	3.336e^-4	0.835	INTERGENIC
2R	2416508	2R_2416508_SNP [dm3] 2R_6529003_SNP [dm6]	T	C	3.340e^-4	0.835	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad
X	9522175	X_9522175_SNP [dm3] X_9628142_SNP [dm6]	C	T	3.341e^-4	0.835	UTR_3_PRIME l_1_G0232 DOWNSTREAM l_1_G0232
X	18751197	X_18751197_SNP [dm3] X_18857164_SNP [dm6]	C	T	3.350e^-4	0.835	SYNONYMOUS_CODING CG7322
3R	14490477	3R_14490477_SNP [dm3] 3R_18664755_SNP [dm6]	A	C	3.352e^-4	0.835	SYNONYMOUS_CODING Gos28 UPSTREAM CG31231	TF binding site mE1_TFBS_cad
2L	7068585	2L_7068585_SNP [dm3] 2L_7068585_SNP [dm6]	G	A	3.354e^-4	0.835	NON_SYNONYMOUS_CODING CG11289 DOWNSTREAM Pvf2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2095404	3L_2095404_SNP [dm3] 3L_2095404_SNP [dm6]	C	T	3.359e^-4	0.835	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	8941247	2R_8941247_SNP [dm3] 2R_13053742_SNP [dm6]	C	T	3.370e^-4	0.835	INTERGENIC
2R	13804488	2R_13804488_SNP [dm3] 2R_17916983_SNP [dm6]	T	A	3.373e^-4	0.835	INTRON Elk
3R	23258398	3R_23258398_SNP [dm3] 3R_27432676_SNP [dm6]	A	C	3.374e^-4	0.835	INTRON side
3R	15519811	3R_15519811_SNP [dm3] 3R_19694089_SNP [dm6]	T	G	3.390e^-4	0.835	INTRON Naam
3L	18058937	3L_18058937_SNP [dm3] 3L_18065837_SNP [dm6]	G	A	3.396e^-4	0.835	INTERGENIC
2L	16798087	2L_16798087_SNP [dm3] 2L_16798087_SNP [dm6]	C	T	3.398e^-4	0.835	SYNONYMOUS_CODING Ugt36Bb UPSTREAM Ugt36Bc
2R	11709407	2R_11709407_SNP [dm3] 2R_15821902_SNP [dm6]	T	A	3.406e^-4	0.835	UPSTREAM CG33465 INTRON tun	TF binding site mE1_TFBS_bab1
3R	18231485	3R_18231485_SNP [dm3] 3R_22405763_SNP [dm6]	T	A	3.408e^-4	0.835	UPSTREAM CG13855 DOWNSTREAM CG13856 INTERGENIC
3L	9511589	3L_9511589_SNP [dm3] 3L_9518489_SNP [dm6]	A	C	3.411e^-4	0.835	INTRON CG33700
3L	12059035	3L_12059035_SNP [dm3] 3L_12065935_SNP [dm6]	T	G	3.411e^-4	0.835	INTERGENIC
2R	6632433	2R_6632433_SNP [dm3] 2R_10744928_SNP [dm6]	C	G	3.414e^-4	0.835	INTRON CG33144
3L	8825539	3L_8825539_SNP [dm3] 3L_8832439_SNP [dm6]	T	C	3.417e^-4	0.835	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1657987	3L_1657987_SNP [dm3] 3L_1657987_SNP [dm6]	G	A	3.418e^-4	0.835	SYNONYMOUS_CODING CG7971
X	4998863	X_4998863_SNP [dm3] X_5104830_SNP [dm6]	G	T	3.426e^-4	0.835	INTRON rg & 1 other
2R	4193325	2R_4193325_SNP [dm3] 2R_8305820_SNP [dm6]	G	A	3.427e^-4	0.835	DOWNSTREAM CR44447 INTERGENIC
2L	18323754	2L_18323754_SNP [dm3] 2L_18323754_SNP [dm6]	T	C	3.429e^-4	0.835	INTRON Fas3
2L	18347138	2L_18347138_SNP [dm3] 2L_18347138_SNP [dm6]	A	G	3.440e^-4	0.835	INTRON Fas3
X	13185802	X_13185802_SNP [dm3] X_13291769_SNP [dm6]	A	G	3.456e^-4	0.835	SYNONYMOUS_CODING CG15744	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8268156	3L_8268156_SNP [dm3] 3L_8275056_SNP [dm6]	G	A	3.458e^-4	0.835	INTRON Dscam4
3R	2516478	3R_2516478_SNP [dm3] 3R_6690756_SNP [dm6]	A	G	3.462e^-4	0.835	UPSTREAM Ccp84Af DOWNSTREAM Ccp84Ae INTERGENIC
2R	17941632	2R_17941632_SNP [dm3] 2R_22054127_SNP [dm6]	T	G	3.463e^-4	0.835	INTERGENIC
3L	15874239	3L_15874239_SNP [dm3] 3L_15881139_SNP [dm6]	A	C	3.469e^-4	0.835	INTRON pHCl
3L	12382911	3L_12382911_SNP [dm3] 3L_12389811_SNP [dm6]	A	C	3.472e^-4	0.835	INTRON Ncc69
3R	20683428	3R_20683428_SNP [dm3] 3R_24857706_SNP [dm6]	T	C	3.474e^-4	0.835	SYNONYMOUS_CODING ppk22 UPSTREAM CG10899
3L	20262589	3L_20262589_SNP [dm3] 3L_20269489_SNP [dm6]	T	G	3.475e^-4	0.835	NON_SYNONYMOUS_CODING gogo DOWNSTREAM CG32228	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24673764	3R_24673764_SNP [dm3] 3R_28848042_SNP [dm6]	T	A	3.479e^-4	0.835	INTRON spg
X	13302845	X_13302845_SNP [dm3] X_13408812_SNP [dm6]	A	T	3.484e^-4	0.835	DOWNSTREAM CG1998 INTRON GstT4
2L	5623562	2L_5623562_SNP [dm3] 2L_5623562_SNP [dm6]	T	G	3.490e^-4	0.835	NON_SYNONYMOUS_CODING Cyp6a16	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3522608	3L_3522608_SNP [dm3] 3L_3522608_SNP [dm6]	A	C	3.497e^-4	0.835	DOWNSTREAM CR45043 INTRON Eip63E
2R	9710773	2R_9710773_SNP [dm3] 2R_13823268_SNP [dm6]	G	C	3.500e^-4	0.835	INTRON fl_2_d	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25446208	3R_25446208_SNP [dm3] 3R_29620486_SNP [dm6]	T	C	3.502e^-4	0.835	SYNONYMOUS_CODING CG1907	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	16011228	2L_16011228_SNP [dm3] 2L_16011228_SNP [dm6]	T	C	3.503e^-4	0.835	INTRON beat-Ic
3R	21120993	3R_21120993_SNP [dm3] 3R_25295271_SNP [dm6]	A	T	3.506e^-4	0.835	NON_SYNONYMOUS_CODING CG31102 DOWNSTREAM CG31097
X	15082505	X_15082505_SNP [dm3] X_15188472_SNP [dm6]	A	C	3.520e^-4	0.835	UTR_3_PRIME CG43737
X	20039057	X_20039057_SNP [dm3] X_20145024_SNP [dm6]	A	G	3.520e^-4	0.835	INTERGENIC
3R	14366909	3R_14366909_SNP [dm3] 3R_18541187_SNP [dm6]	G	C	3.524e^-4	0.835	INTRON fru
2L	16755136	2L_16755136_SNP [dm3] 2L_16755136_SNP [dm6]	C	A	3.540e^-4	0.835	INTRON yellow-b
3R	22571775	3R_22571775_SNP [dm3] 3R_26746053_SNP [dm6]	T	A	3.543e^-4	0.835	INTERGENIC
3R	13289877	3R_13289877_SNP [dm3] 3R_17464155_SNP [dm6]	T	G	3.544e^-4	0.835	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	12523846	3L_12523846_SNP [dm3] 3L_12530746_SNP [dm6]	G	A	3.554e^-4	0.835	UTR_3_PRIME Tsf2 UPSTREAM nst	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21119538	3R_21119538_SNP [dm3] 3R_25293816_SNP [dm6]	A	G	3.556e^-4	0.835	SYNONYMOUS_CODING CG31102 UPSTREAM CG31098
2L	5069498	2L_5069498_SNP [dm3] 2L_5069498_SNP [dm6]	A	C	3.558e^-4	0.835	DOWNSTREAM mir-2495 & 1 other INTRON qtc
3R	15390563	3R_15390563_SNP [dm3] 3R_19564841_SNP [dm6]	A	G	3.559e^-4	0.835	INTRON Dys
3L	2097711	3L_2097711_SNP [dm3] 3L_2097711_SNP [dm6]	C	T	3.560e^-4	0.835	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	18602148	3R_18602148_INS [dm3] 3R_22776426_INS [dm6]	C	GAA	3.562e^-4	0.835	DOWNSTREAM Usp12-46 INTRON CG7029	TF binding site mE1_TFBS_cad
2R	3477413	2R_3477413_SNP [dm3] 2R_7589908_SNP [dm6]	A	C	3.563e^-4	0.835	UPSTREAM scra INTRON CG1360	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	16553404	X_16553404_SNP [dm3] X_16659371_SNP [dm6]	G	A	3.569e^-4	0.835	SYNONYMOUS_CODING r	TF binding site mE1_TFBS_chinmo
X	11554153	X_11554153_SNP [dm3] X_11660120_SNP [dm6]	C	T	3.573e^-4	0.835	INTRON Ptp10D
2R	4193206	2R_4193206_SNP [dm3] 2R_8305701_SNP [dm6]	T	C	3.579e^-4	0.835	DOWNSTREAM CR44447 INTERGENIC
3L	16802473	3L_16802473_INS [dm3] 3L_16809373_INS [dm6]	T	TGTGGT	3.580e^-4	0.835	DOWNSTREAM CG13024 INTRON nudC
3R	25336896	3R_25336896_SNP [dm3] 3R_29511174_SNP [dm6]	T	C	3.585e^-4	0.835	INTERGENIC
3R	21411101	3R_21411101_SNP [dm3] 3R_25585379_SNP [dm6]	T	C	3.589e^-4	0.835	INTRON msi
2L	18502203	2L_18502203_SNP [dm3] 2L_18502203_SNP [dm6]	C	A	3.594e^-4	0.835	INTRON kon	TF binding site BDTNP1_TFBS_prd
3L	12555413	3L_12555413_SNP [dm3] 3L_12562313_SNP [dm6]	T	A	3.595e^-4	0.835	INTRON sowah
3R	20284463	3R_20284463_SNP [dm3] 3R_24458741_SNP [dm6]	T	G	3.600e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	12087843	3L_12087843_SNP [dm3] 3L_12094743_SNP [dm6]	C	T	3.603e^-4	0.835	INTERGENIC
3L	15467136	3L_15467136_SNP [dm3] 3L_15474036_SNP [dm6]	C	T	3.605e^-4	0.835	UTR_5_PRIME CG7804
3R	472625	3R_472625_SNP [dm3] 3R_4646903_SNP [dm6]	C	A	3.606e^-4	0.835	SYNONYMOUS_CODING rpk EXON CR44155	TF binding site mE1_TFBS_sens
2R	15572385	2R_15572385_SNP [dm3] 2R_19684880_SNP [dm6]	G	A	3.606e^-4	0.835	UPSTREAM CR44505 DOWNSTREAM CG15128 INTERGENIC
3L	14184848	3L_14184848_SNP [dm3] 3L_14191748_SNP [dm6]	C	A	3.608e^-4	0.835	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	1128215	3L_1128215_SNP [dm3] 3L_1128215_SNP [dm6]	A	T	3.608e^-4	0.835	INTERGENIC	regulatory region REDfly_CRMs
3L	14514162	3L_14514162_SNP [dm3] 3L_14521062_SNP [dm6]	T	C	3.612e^-4	0.835	INTRON bbg & 1 other
3R	15583706	3R_15583706_SNP [dm3] 3R_19757984_SNP [dm6]	C	T	3.614e^-4	0.835	INTRON GluClalpha
X	837915	X_837915_SNP [dm3] X_943882_SNP [dm6]	G	A	3.630e^-4	0.835	NON_SYNONYMOUS_CODING CG3703 DOWNSTREAM mus81	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	9833887	X_9833887_SNP [dm3] X_9939854_SNP [dm6]	A	G	3.640e^-4	0.835	INTERGENIC
2R	20564533	2R_20564533_SNP [dm3] 2R_24677010_SNP [dm6]	G	A	3.644e^-4	0.835	INTRON Mmp1
2R	13645680	2R_13645680_SNP [dm3] 2R_17758175_SNP [dm6]	G	A	3.649e^-4	0.835	SYNONYMOUS_CODING HLH54F	TF binding site BDTNP1_TFBS_twi
X	20306144	X_20306144_INS [dm3] X_20435117_INS [dm6]	T	TTCATTTT	3.651e^-4	0.835	INTRON CG1695
3R	13042221	3R_13042221_SNP [dm3] 3R_17216499_SNP [dm6]	T	G	3.658e^-4	0.835	DOWNSTREAM CG31262 INTERGENIC
X	21837539	X_21837539_SNP [dm3] X_22435704_SNP [dm6]	C	A	3.658e^-4	0.835	INTERGENIC
2R	2417651	2R_2417651_SNP [dm3] 2R_6530146_SNP [dm6]	A	T	3.659e^-4	0.835	INTRON jing	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	5886744	2L_5886744_SNP [dm3] 2L_5886744_SNP [dm6]	A	G	3.663e^-4	0.835	DOWNSTREAM CR44577 & 1 other INTERGENIC
2L	16011158	2L_16011158_SNP [dm3] 2L_16011158_SNP [dm6]	A	T	3.664e^-4	0.835	INTRON beat-Ic
2L	8660055	2L_8660055_SNP [dm3] 2L_8660055_SNP [dm6]	A	G	3.666e^-4	0.835	INTRON Sema-1a
3R	7974457	3R_7974457_SNP [dm3] 3R_12148735_SNP [dm6]	A	G	3.675e^-4	0.835	INTRON dpr15
3L	11839451	3L_11839451_SNP [dm3] 3L_11846351_SNP [dm6]	T	G	3.676e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20320968	X_20320968_SNP [dm3] X_20449941_SNP [dm6]	C	A	3.677e^-4	0.835	UTR_5_PRIME CG32506
2R	19034632	2R_19034632_SNP [dm3] 2R_23147109_SNP [dm6]	T	C	3.677e^-4	0.835	INTERGENIC
3R	11527566	3R_11527566_SNP [dm3] 3R_15701844_SNP [dm6]	G	C	3.679e^-4	0.835	INTERGENIC
3R	11498996	3R_11498996_SNP [dm3] 3R_15673274_SNP [dm6]	C	G	3.682e^-4	0.835	INTRON pxb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5600852	2L_5600852_SNP [dm3] 2L_5600852_SNP [dm6]	G	T	3.683e^-4	0.835	DOWNSTREAM CG14010 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	14348130	3L_14348130_SNP [dm3] 3L_14355030_SNP [dm6]	C	A	3.685e^-4	0.835	INTRON fz	TF binding site BDTNP1_TFBS_twi
3L	7887306	3L_7887306_SNP [dm3] 3L_7894206_SNP [dm6]	C	T	3.691e^-4	0.835	SYNONYMOUS_CODING CG32365 UPSTREAM eIF4E-5	TF binding site mE1_TFBS_cad
3L	17124472	3L_17124472_SNP [dm3] 3L_17131372_SNP [dm6]	A	G	3.695e^-4	0.835	INTRON Rbp6
3R	13928171	3R_13928171_SNP [dm3] 3R_18102449_SNP [dm6]	G	A	3.695e^-4	0.835	INTRON sr
3R	21107274	3R_21107274_SNP [dm3] 3R_25281552_SNP [dm6]	G	C	3.702e^-4	0.835	UTR_5_PRIME CG11892 UPSTREAM CG11892
3L	8837897	3L_8837897_SNP [dm3] 3L_8844797_SNP [dm6]	T	G	3.704e^-4	0.835	INTRON dally
2L	5302612	2L_5302612_SNP [dm3] 2L_5302612_SNP [dm6]	A	T	3.709e^-4	0.835	INTRON vri
2R	16741637	2R_16741637_SNP [dm3] 2R_20854132_SNP [dm6]	C	A	3.745e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	12852127	3L_12852127_SNP [dm3] 3L_12859027_SNP [dm6]	C	T	3.745e^-4	0.835	SYNONYMOUS_CODING CG32107
2L	18306007	2L_18306007_SNP [dm3] 2L_18306007_SNP [dm6]	T	G	3.758e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12555373	3L_12555373_SNP [dm3] 3L_12562273_SNP [dm6]	A	T	3.759e^-4	0.835	INTRON sowah
2R	6637345	2R_6637345_SNP [dm3] 2R_10749840_SNP [dm6]	C	T	3.766e^-4	0.835	INTRON CG33144
3L	8838742	3L_8838742_SNP [dm3] 3L_8845642_SNP [dm6]	G	T	3.769e^-4	0.835	INTRON dally
3L	12053404	3L_12053404_SNP [dm3] 3L_12060304_SNP [dm6]	T	A	3.771e^-4	0.835	INTRON rols	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	6938683	2L_6938683_SNP [dm3] 2L_6938683_SNP [dm6]	C	G	3.778e^-4	0.835	SYNONYMOUS_CODING CG18304	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	12579666	2L_12579666_SNP [dm3] 2L_12579666_SNP [dm6]	T	A	3.782e^-4	0.835	INTERGENIC	TF binding site mE1_TFBS_Kr
X	6656678	X_6656678_SNP [dm3] X_6762645_SNP [dm6]	G	A	3.782e^-4	0.835	SYNONYMOUS_CODING CG14438
2R	7828824	2R_7828824_SNP [dm3] 2R_11941319_SNP [dm6]	C	T	3.784e^-4	0.835	INTRON CG13188
2L	6938209	2L_6938209_SNP [dm3] 2L_6938209_SNP [dm6]	C	T	3.788e^-4	0.835	SYNONYMOUS_CODING CG18304	TF binding site mE1_TFBS_chinmo
X	15292412	X_15292412_SNP [dm3] X_15398379_SNP [dm6]	A	G	3.790e^-4	0.835	INTRON Cngl
3R	21458473	3R_21458473_SNP [dm3] 3R_25632751_SNP [dm6]	C	G	3.793e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	15659016	3R_15659016_SNP [dm3] 3R_19833294_SNP [dm6]	A	C	3.793e^-4	0.835	INTRON bnl
X	12943423	X_12943423_SNP [dm3] X_13049390_SNP [dm6]	T	C	3.799e^-4	0.835	INTRON rad
2R	20400426	2R_20400426_SNP [dm3] 2R_24512903_SNP [dm6]	C	T	3.802e^-4	0.835	SYNONYMOUS_CODING Letm1	TF binding site mE1_TFBS_cad
3R	23053915	3R_23053915_SNP [dm3] 3R_27228193_SNP [dm6]	G	A	3.807e^-4	0.835	SYNONYMOUS_CODING CG42813 DOWNSTREAM CG42814	TF binding site mE1_TFBS_cad
2L	18323812	2L_18323812_SNP [dm3] 2L_18323812_SNP [dm6]	G	A	3.815e^-4	0.835	INTRON Fas3
3R	15659004	3R_15659004_SNP [dm3] 3R_19833282_SNP [dm6]	C	T	3.820e^-4	0.835	INTRON bnl
X	20851174	X_20851174_SNP [dm3] X_20980147_SNP [dm6]	G	A	3.822e^-4	0.835	INTERGENIC
3L	16656871	3L_16656871_SNP [dm3] 3L_16663771_SNP [dm6]	A	G	3.823e^-4	0.835	INTRON Galphaf	TF binding site mE1_TFBS_cad
3R	10583891	3R_10583891_SNP [dm3] 3R_14758169_SNP [dm6]	T	C	3.830e^-4	0.835	INTRON jvl
2R	11710813	2R_11710813_SNP [dm3] 2R_15823308_SNP [dm6]	C	T	3.831e^-4	0.835	INTRON tun	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	16011270	2L_16011270_SNP [dm3] 2L_16011270_SNP [dm6]	G	A	3.842e^-4	0.835	INTRON beat-Ic
2L	4463869	2L_4463869_SNP [dm3] 2L_4463869_SNP [dm6]	T	C	3.851e^-4	0.835	SYNONYMOUS_CODING CG15436 UPSTREAM CG15443	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2R	14800038	2R_14800038_SNP [dm3] 2R_18912533_SNP [dm6]	A	G	3.874e^-4	0.835	UPSTREAM Vha100-3 INTRON sano
2L	584236	2L_584236_SNP [dm3] 2L_584236_SNP [dm6]	C	T	3.876e^-4	0.835	SYNONYMOUS_CODING Gsc
2R	20905872	2R_20905872_SNP [dm3] 2R_25018349_SNP [dm6]	C	A	3.877e^-4	0.835	INTRON uzip	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3034251	2R_3034251_SNP [dm3] 2R_7146746_SNP [dm6]	G	A	3.881e^-4	0.835	UPSTREAM Spn43Aa INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	16677755	2R_16677755_SNP [dm3] 2R_20790250_SNP [dm6]	T	C	3.903e^-4	0.835	UTR_3_PRIME CG43677 UPSTREAM CG43667
3R	23329043	3R_23329043_SNP [dm3] 3R_27503321_SNP [dm6]	G	T	3.907e^-4	0.835	UPSTREAM CG5402 INTERGENIC
X	20849696	X_20849696_SNP [dm3] X_20978669_SNP [dm6]	C	G	3.922e^-4	0.835	UTR_3_PRIME CG44426
3L	7415483	3L_7415483_SNP [dm3] 3L_7422383_SNP [dm6]	T	A	3.924e^-4	0.835	INTERGENIC
X	7424521	X_7424521_SNP [dm3] X_7530488_SNP [dm6]	A	T	3.947e^-4	0.835	INTRON CG32719	regulatory region REDfly_CRMs
3R	13330332	3R_13330332_SNP [dm3] 3R_17504610_SNP [dm6]	C	G	3.953e^-4	0.835	INTRON Dscam3
2L	7443607	2L_7443607_SNP [dm3] 2L_7443607_SNP [dm6]	C	G	3.959e^-4	0.835	UTR_5_PRIME CG5973
3R	13789861	3R_13789861_SNP [dm3] 3R_17964139_SNP [dm6]	C	A	3.959e^-4	0.835	INTRON cpo
2R	9606146	2R_9606146_SNP [dm3] 2R_13718641_SNP [dm6]	T	C	3.961e^-4	0.835	INTRON fas	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	10715298	2L_10715298_SNP [dm3] 2L_10715298_SNP [dm6]	A	T	3.961e^-4	0.835	INTERGENIC
2L	18300679	2L_18300679_SNP [dm3] 2L_18300679_SNP [dm6]	C	T	3.969e^-4	0.835	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1277351	2L_1277351_SNP [dm3] 2L_1277351_SNP [dm6]	C	A	3.970e^-4	0.835	INTRON robo3
2R	6642044	2R_6642044_SNP [dm3] 2R_10754539_SNP [dm6]	C	G	3.971e^-4	0.835	INTRON CG33144
X	13237998	X_13237998_SNP [dm3] X_13343965_SNP [dm6]	A	C	3.973e^-4	0.835	DOWNSTREAM CR45708 INTERGENIC
3R	16565040	3R_16565040_SNP [dm3] 3R_20739318_SNP [dm6]	C	T	3.978e^-4	0.835	UPSTREAM CG17267 & 1 other DOWNSTREAM cdc2c INTERGENIC
3L	12472039	3L_12472039_SNP [dm3] 3L_12478939_SNP [dm6]	G	A	3.982e^-4	0.835	INTRON CG10663
3L	12217127	3L_12217127_SNP [dm3] 3L_12224027_SNP [dm6]	T	C	3.986e^-4	0.835	INTRON app
3L	13464370	3L_13464370_SNP [dm3] 3L_13471270_SNP [dm6]	A	T	3.990e^-4	0.835	INTRON CG10089
2L	3976459	2L_3976459_SNP [dm3] 2L_3976459_SNP [dm6]	T	A	3.999e^-4	0.835	INTRON fred
2L	18506698	2L_18506698_SNP [dm3] 2L_18506698_SNP [dm6]	G	C	4.007e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7018100	X_7018100_SNP [dm3] X_7124067_SNP [dm6]	C	T	4.010e^-4	0.835	INTERGENIC
2R	11710708	2R_11710708_SNP [dm3] 2R_15823203_SNP [dm6]	T	C	4.011e^-4	0.835	INTRON tun	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	20907082	2R_20907082_SNP [dm3] 2R_25019559_SNP [dm6]	T	C	4.037e^-4	0.835	INTRON uzip
2L	6108536	2L_6108536_SNP [dm3] 2L_6108536_SNP [dm6]	A	G	4.037e^-4	0.835	INTRON stai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	7120559	2L_7120559_SNP [dm3] 2L_7120559_SNP [dm6]	C	T	4.038e^-4	0.835	INTRON Pvf3
3L	16802468	3L_16802468_SNP [dm3] 3L_16809368_SNP [dm6]	G	A	4.039e^-4	0.835	DOWNSTREAM CG13024 INTRON nudC
X	3926189	X_3926189_SNP [dm3] X_4032156_SNP [dm6]	T	C	4.041e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19039683	2R_19039683_SNP [dm3] 2R_23152160_SNP [dm6]	G	C	4.041e^-4	0.835	UPSTREAM CG43207 INTERGENIC
3L	18146535	3L_18146535_SNP [dm3] 3L_18153435_SNP [dm6]	C	T	4.046e^-4	0.835	UTR_3_PRIME CG7330
2L	16101133	2L_16101133_SNP [dm3] 2L_16101133_SNP [dm6]	T	G	4.052e^-4	0.835	INTERGENIC
2L	5806488	2L_5806488_SNP [dm3] 2L_5806488_SNP [dm6]	A	T	4.054e^-4	0.835	INTRON CG11034
X	8384919	X_8384919_SNP [dm3] X_8490886_SNP [dm6]	A	G	4.058e^-4	0.835	UPSTREAM CG33181 INTRON CG33181	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9090348	2R_9090348_SNP [dm3] 2R_13202843_SNP [dm6]	T	A	4.061e^-4	0.835	UTR_3_PRIME lat & 1 other DOWNSTREAM Aats-val	TF binding site mE1_TFBS_cad
3L	9728641	3L_9728641_SNP [dm3] 3L_9735541_SNP [dm6]	A	T	4.073e^-4	0.835	INTRON CG42268
3L	10635503	3L_10635503_SNP [dm3] 3L_10642403_SNP [dm6]	G	A	4.078e^-4	0.835	SYNONYMOUS_CODING CG14154 INTRON CG32066
3R	12102888	3R_12102888_SNP [dm3] 3R_16277166_SNP [dm6]	T	A	4.082e^-4	0.835	INTRON gish	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17652424	2R_17652424_SNP [dm3] 2R_21764919_SNP [dm6]	C	A	4.083e^-4	0.835	UPSTREAM CR43983 & 1 other DOWNSTREAM CR43984 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	13269811	3L_13269811_SNP [dm3] 3L_13276711_SNP [dm6]	C	T	4.084e^-4	0.835	SYNONYMOUS_CODING caps	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20095153	3R_20095153_SNP [dm3] 3R_24269431_SNP [dm6]	C	T	4.085e^-4	0.835	INTRON jar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	23480955	3R_23480955_SNP [dm3] 3R_27655233_SNP [dm6]	C	T	4.096e^-4	0.835	INTRON tau
3R	20585296	3R_20585296_SNP [dm3] 3R_24759574_SNP [dm6]	C	A	4.099e^-4	0.835	DOWNSTREAM AstA INTRON asp	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5261077	2L_5261077_SNP [dm3] 2L_5261077_SNP [dm6]	A	G	4.106e^-4	0.835	INTRON tkv
3L	5801575	3L_5801575_SNP [dm3] 3L_5808475_SNP [dm6]	G	T	4.108e^-4	0.835	INTRON S6k	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	9233443	2R_9233443_SNP [dm3] 2R_13345938_SNP [dm6]	A	C	4.111e^-4	0.835	INTRON CR44206
X	4348488	X_4348488_SNP [dm3] X_4454455_SNP [dm6]	A	G	4.118e^-4	0.835	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14107751	3R_14107751_SNP [dm3] 3R_18282029_SNP [dm6]	A	G	4.126e^-4	0.835	UTR_3_PRIME eIF-1A DOWNSTREAM CG14312
2R	12625242	2R_12625242_SNP [dm3] 2R_16737737_SNP [dm6]	A	G	4.126e^-4	0.835	SYNONYMOUS_CODING CG43104 UPSTREAM CR44464	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	12625244	2R_12625244_SNP [dm3] 2R_16737739_SNP [dm6]	G	A	4.126e^-4	0.835	NON_SYNONYMOUS_CODING CG43104 UPSTREAM CR44464	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6893980	3L_6893980_SNP [dm3] 3L_6900880_SNP [dm6]	A	G	4.128e^-4	0.835	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	19049545	3R_19049545_SNP [dm3] 3R_23223823_SNP [dm6]	C	T	4.157e^-4	0.835	INTRON cnc
3R	21312834	3R_21312834_SNP [dm3] 3R_25487112_SNP [dm6]	C	T	4.158e^-4	0.835	SYNONYMOUS_CODING Dhap-at	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6246394	2R_6246394_SNP [dm3] 2R_10358889_SNP [dm6]	G	C	4.159e^-4	0.835	INTRON CG42732
X	12179937	X_12179937_SNP [dm3] X_12285904_SNP [dm6]	A	C	4.163e^-4	0.835	SYNONYMOUS_CODING Ten-a	TF binding site mE1_TFBS_chinmo
2R	12681714	2R_12681714_SNP [dm3] 2R_16794209_SNP [dm6]	T	G	4.165e^-4	0.835	INTRON CG15615
3R	13790224	3R_13790224_SNP [dm3] 3R_17964502_SNP [dm6]	T	C	4.167e^-4	0.835	INTRON cpo
3L	7415345	3L_7415345_SNP [dm3] 3L_7422245_SNP [dm6]	A	G	4.173e^-4	0.835	INTERGENIC
3R	23888943	3R_23888943_SNP [dm3] 3R_28063221_SNP [dm6]	C	T	4.178e^-4	0.835	INTRON CG34362
2L	16011147	2L_16011147_SNP [dm3] 2L_16011147_SNP [dm6]	A	T	4.180e^-4	0.835	INTRON beat-Ic
3L	2480088	3L_2480088_SNP [dm3] 3L_2480088_SNP [dm6]	A	G	4.189e^-4	0.835	INTRON CG45186	TF binding site BDTNP1_TFBS_twi
3R	10575486	3R_10575486_SNP [dm3] 3R_14749764_SNP [dm6]	A	T	4.192e^-4	0.835	UPSTREAM smp-30 INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2R	12680885	2R_12680885_SNP [dm3] 2R_16793380_SNP [dm6]	A	G	4.204e^-4	0.835	SYNONYMOUS_CODING CG15615 DOWNSTREAM CG5522 & 1 other
2R	9150805	2R_9150805_SNP [dm3] 2R_13263300_SNP [dm6]	G	A	4.212e^-4	0.835	INTRON CG42319
3L	761297	3L_761297_SNP [dm3] 3L_761297_SNP [dm6]	T	C	4.213e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	7807516	2L_7807516_SNP [dm3] 2L_7807516_SNP [dm6]	A	G	4.225e^-4	0.835	INTRON cdc14
3R	20223039	3R_20223039_SNP [dm3] 3R_24397317_SNP [dm6]	G	T	4.226e^-4	0.835	UTR_3_PRIME nAChRalpha1
3R	25420476	3R_25420476_SNP [dm3] 3R_29594754_SNP [dm6]	T	G	4.235e^-4	0.835	INTRON alph
2L	1098990	2L_1098990_SNP [dm3] 2L_1098990_SNP [dm6]	G	T	4.241e^-4	0.835	INTRON CG4629
3R	24683428	3R_24683428_SNP [dm3] 3R_28857706_SNP [dm6]	T	C	4.244e^-4	0.835	INTRON spg & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	17886846	2L_17886846_DEL [dm3] 2L_17886846_DEL [dm6]	AAGAGAAGA	A	4.250e^-4	0.835	INTERGENIC
2L	12966507	2L_12966507_SNP [dm3] 2L_12966507_SNP [dm6]	G	C	4.262e^-4	0.835	UPSTREAM CG16800 INTERGENIC
2L	3856033	2L_3856033_SNP [dm3] 2L_3856033_SNP [dm6]	C	A	4.264e^-4	0.835	DOWNSTREAM CR45450 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	6820496	2R_6820496_INS [dm3] 2R_10932991_INS [dm6]	A	AGTGACGAAGCACAC...	4.267e^-4	0.835	INTERGENIC
3L	3522607	3L_3522607_SNP [dm3] 3L_3522607_SNP [dm6]	C	A	4.269e^-4	0.835	DOWNSTREAM CR45043 INTRON Eip63E
2R	18770210	2R_18770210_SNP [dm3] 2R_22882687_SNP [dm6]	C	T	4.285e^-4	0.835	UTR_5_PRIME CG3501 DOWNSTREAM CG3499	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	1800071	3R_1800071_SNP [dm3] 3R_5974349_SNP [dm6]	C	T	4.291e^-4	0.835	INTRON Obp83a
2R	9315715	2R_9315715_SNP [dm3] 2R_13428210_SNP [dm6]	G	A	4.292e^-4	0.835	INTRON CG42321
2L	19120337	2L_19120337_SNP [dm3] 2L_19120337_SNP [dm6]	T	C	4.301e^-4	0.835	UPSTREAM Ddc INTERGENIC	regulatory region REDfly_CRMs
2R	11967274	2R_11967274_SNP [dm3] 2R_16079769_SNP [dm6]	C	A	4.306e^-4	0.835	UPSTREAM CR43415 INTERGENIC
2L	1875901	2L_1875901_SNP [dm3] 2L_1875901_SNP [dm6]	C	T	4.311e^-4	0.835	INTRON CG31663
2R	7539766	2R_7539766_SNP [dm3] 2R_11652261_SNP [dm6]	A	G	4.318e^-4	0.835	SYNONYMOUS_CODING CG34228 UPSTREAM CG9003 & 1 other DOWNSTREAM tRNA:CR30254 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	1145979	2L_1145979_SNP [dm3] 2L_1145979_SNP [dm6]	G	C	4.322e^-4	0.835	SYNONYMOUS_CODING MFS3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5302611	2L_5302611_SNP [dm3] 2L_5302611_SNP [dm6]	T	C	4.326e^-4	0.835	INTRON vri
X	13187416	X_13187416_SNP [dm3] X_13293383_SNP [dm6]	G	A	4.336e^-4	0.835	SYNONYMOUS_CODING CG15744
3L	2094176	3L_2094176_SNP [dm3] 3L_2094176_SNP [dm6]	T	C	4.341e^-4	0.835	SYNONYMOUS_CODING sls
3L	20244293	3L_20244293_SNP [dm3] 3L_20251193_SNP [dm6]	T	C	4.349e^-4	0.835	INTRON rdgC
3L	18217373	3L_18217373_SNP [dm3] 3L_18224273_SNP [dm6]	C	A	4.350e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	18739928	3R_18739928_SNP [dm3] 3R_22914206_SNP [dm6]	G	T	4.352e^-4	0.835	INTRON klg
2R	2418422	2R_2418422_SNP [dm3] 2R_6530917_SNP [dm6]	A	G	4.358e^-4	0.835	INTRON jing	TF binding site mE1_TFBS_cad
3R	3483086	3R_3483086_SNP [dm3] 3R_7657364_SNP [dm6]	G	A	4.363e^-4	0.835	UPSTREAM Nlg1 INTERGENIC
3L	3446949	3L_3446949_SNP [dm3] 3L_3446949_SNP [dm6]	A	G	4.363e^-4	0.835	INTRON eIF5B
2R	11710680	2R_11710680_SNP [dm3] 2R_15823175_SNP [dm6]	G	T	4.364e^-4	0.835	INTRON tun	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21119260	3R_21119260_SNP [dm3] 3R_25293538_SNP [dm6]	T	C	4.365e^-4	0.835	UTR_3_PRIME CG31102 UPSTREAM CG31098
3R	880883	3R_880883_SNP [dm3] 3R_5055161_SNP [dm6]	T	C	4.366e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13082296	3L_13082296_SNP [dm3] 3L_13089196_SNP [dm6]	G	A	4.374e^-4	0.835	SYNONYMOUS_CODING CG11251 DOWNSTREAM CR45749	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2879040	3L_2879040_SNP [dm3] 3L_2879040_SNP [dm6]	A	T	4.379e^-4	0.835	UTR_5_PRIME CG43444	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_sens
3L	17259464	3L_17259464_SNP [dm3] 3L_17266364_SNP [dm6]	C	T	4.380e^-4	0.835	INTERGENIC
2L	8082254	2L_8082254_SNP [dm3] 2L_8082254_SNP [dm6]	T	A	4.387e^-4	0.835	UPSTREAM CR45257 INTRON Mcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2R	19501338	2R_19501338_SNP [dm3] 2R_23613815_SNP [dm6]	G	C	4.388e^-4	0.835	INTRON CG17664 & 1 other
2R	13494413	2R_13494413_SNP [dm3] 2R_17606908_SNP [dm6]	C	G	4.390e^-4	0.835	SYNONYMOUS_CODING CG10936
X	15965837	X_15965837_SNP [dm3] X_16071804_SNP [dm6]	T	G	4.391e^-4	0.835	SYNONYMOUS_CODING Nipsnap
2R	9150639	2R_9150639_DEL [dm3] 2R_13263134_DEL [dm6]	GTG	G	4.403e^-4	0.835	INTRON CG42319
X	7852612	X_7852612_SNP [dm3] X_7958579_SNP [dm6]	A	G	4.407e^-4	0.835	UPSTREAM CR45620 INTRON sws	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	4753708	2L_4753708_SNP [dm3] 2L_4753708_SNP [dm6]	A	G	4.411e^-4	0.835	INTRON CG15630
2L	18356955	2L_18356955_SNP [dm3] 2L_18356955_SNP [dm6]	C	T	4.416e^-4	0.835	NON_SYNONYMOUS_CODING Acp36DE INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	18621444	2R_18621444_SNP [dm3] 2R_22733939_SNP [dm6]	C	T	4.417e^-4	0.835	SYNONYMOUS_CODING jbug
2L	10491369	2L_10491369_SNP [dm3] 2L_10491369_SNP [dm6]	C	T	4.425e^-4	0.835	UTR_5_PRIME CG13144 DOWNSTREAM CG6144 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5268172	2L_5268172_SNP [dm3] 2L_5268172_SNP [dm6]	C	T	4.429e^-4	0.835	SYNONYMOUS_CODING Cyp4ac2 UPSTREAM Cyp4ac3 INTRON tkv
X	6107646	X_6107646_SNP [dm3] X_6213613_SNP [dm6]	T	G	4.431e^-4	0.835	INTERGENIC
X	21462734	X_21462734_SNP [dm3] X_21591707_SNP [dm6]	T	C	4.434e^-4	0.835	INTERGENIC
2R	7539804	2R_7539804_SNP [dm3] 2R_11652299_SNP [dm6]	A	C	4.440e^-4	0.835	UTR_3_PRIME CG34228 UPSTREAM CG9003 & 1 other DOWNSTREAM tRNA:CR30254 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	5054018	3R_5054018_SNP [dm3] 3R_9228296_SNP [dm6]	G	A	4.447e^-4	0.835	INTRON pum & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	11613857	3L_11613857_SNP [dm3] 3L_11620757_SNP [dm6]	C	T	4.452e^-4	0.835	UPSTREAM Muc68Ca INTRON CG6084
3R	21119615	3R_21119615_SNP [dm3] 3R_25293893_SNP [dm6]	T	A	4.463e^-4	0.835	UPSTREAM CG31098 INTRON CG31102
X	7602661	X_7602661_DEL [dm3] X_7708628_DEL [dm6]	AT	A	4.469e^-4	0.835	DOWNSTREAM CR43287 INTRON CHES-1-like	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	12594631	X_12594631_SNP [dm3] X_12700598_SNP [dm6]	C	G	4.481e^-4	0.835	INTRON Smr
3L	8011573	3L_8011573_SNP [dm3] 3L_8018473_SNP [dm6]	G	A	4.483e^-4	0.835	INTRON nmo
2L	755537	2L_755537_DEL [dm3] 2L_755537_DEL [dm6]	ATTTATTTGCCTGGC...	A	4.485e^-4	0.835	INTRON GABA-B-R3
2R	13290832	2R_13290832_SNP [dm3] 2R_17403327_SNP [dm6]	G	C	4.488e^-4	0.835	INTRON Sip1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	18231344	3R_18231344_SNP [dm3] 3R_22405622_SNP [dm6]	A	T	4.489e^-4	0.835	UPSTREAM CG13855 DOWNSTREAM CG13856 INTERGENIC
2R	14850687	2R_14850687_SNP [dm3] 2R_18963182_SNP [dm6]	A	T	4.494e^-4	0.835	INTERGENIC
3R	21364694	3R_21364694_SNP [dm3] 3R_25538972_SNP [dm6]	A	C	4.495e^-4	0.835	INTRON msi
2L	12274097	2L_12274097_SNP [dm3] 2L_12274097_SNP [dm6]	C	T	4.496e^-4	0.835	INTRON aret
X	8385101	X_8385101_SNP [dm3] X_8491068_SNP [dm6]	A	T	4.498e^-4	0.835	UPSTREAM CG33181 INTRON CG33181	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9281607	2R_9281607_SNP [dm3] 2R_13394102_SNP [dm6]	G	A	4.498e^-4	0.835	UPSTREAM CG43691 DOWNSTREAM CG4744 INTRON AttC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6938707	2L_6938707_SNP [dm3] 2L_6938707_SNP [dm6]	A	G	4.504e^-4	0.835	SYNONYMOUS_CODING CG18304	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	8678824	X_8678824_SNP [dm3] X_8784791_SNP [dm6]	T	C	4.505e^-4	0.835	INTRON Lim1
3L	9815324	3L_9815324_SNP [dm3] 3L_9822224_SNP [dm6]	T	G	4.511e^-4	0.835	INTRON CG43897
X	20849978	X_20849978_SNP [dm3] X_20978951_SNP [dm6]	T	C	4.525e^-4	0.835	DOWNSTREAM CG44426 INTERGENIC
2L	3120896	2L_3120896_SNP [dm3] 2L_3120896_SNP [dm6]	C	T	4.526e^-4	0.835	INTRON toc
X	5154001	X_5154001_SNP [dm3] X_5259968_SNP [dm6]	G	A	4.532e^-4	0.835	INTERGENIC
2R	6862368	2R_6862368_SNP [dm3] 2R_10974863_SNP [dm6]	A	C	4.535e^-4	0.835	INTERGENIC
3L	8378242	3L_8378242_SNP [dm3] 3L_8385142_SNP [dm6]	T	C	4.538e^-4	0.835	INTRON ImpE1
X	5199392	X_5199392_SNP [dm3] X_5305359_SNP [dm6]	C	G	4.546e^-4	0.835	SYNONYMOUS_CODING CG3323 DOWNSTREAM CG17764 INTRON CG42749
3R	7937404	3R_7937404_SNP [dm3] 3R_12111682_SNP [dm6]	C	T	4.551e^-4	0.835	DOWNSTREAM dpr17 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8837909	3L_8837909_SNP [dm3] 3L_8844809_SNP [dm6]	C	A	4.552e^-4	0.835	INTRON dally
2L	610019	2L_610019_SNP [dm3] 2L_610019_SNP [dm6]	C	T	4.556e^-4	0.835	UPSTREAM CR43649 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	913540	3L_913540_SNP [dm3] 3L_913540_SNP [dm6]	G	A	4.559e^-4	0.835	UPSTREAM Glut1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21123356	3R_21123356_SNP [dm3] 3R_25297634_SNP [dm6]	A	T	4.560e^-4	0.835	SYNONYMOUS_CODING CG31097 DOWNSTREAM CG31288	TF binding site mE1_TFBS_sens
2L	16806903	2L_16806903_SNP [dm3] 2L_16806903_SNP [dm6]	T	C	4.568e^-4	0.835	UPSTREAM CG13272 INTRON CG13280 & 1 other
2L	6938314	2L_6938314_SNP [dm3] 2L_6938314_SNP [dm6]	G	A	4.577e^-4	0.835	SYNONYMOUS_CODING CG18304	TF binding site mE1_TFBS_chinmo
3L	14180865	3L_14180865_SNP [dm3] 3L_14187765_SNP [dm6]	T	C	4.579e^-4	0.835	SYNONYMOUS_CODING nan
X	1061028	X_1061028_SNP [dm3] X_1166995_SNP [dm6]	C	T	4.580e^-4	0.835	INTERGENIC
3L	7889319	3L_7889319_SNP [dm3] 3L_7896219_SNP [dm6]	G	A	4.580e^-4	0.835	UTR_3_PRIME pbl DOWNSTREAM eIF4E-5
3L	8762686	3L_8762686_SNP [dm3] 3L_8769586_SNP [dm6]	A	G	4.581e^-4	0.835	INTRON Fhos
2L	14865229	2L_14865229_SNP [dm3] 2L_14865229_SNP [dm6]	G	C	4.582e^-4	0.835	INTERGENIC
3L	4701240	3L_4701240_SNP [dm3] 3L_4701240_SNP [dm6]	A	G	4.585e^-4	0.835	INTRON RhoGEF64C
3L	23444144	3L_23444144_SNP [dm3] 3L_23451044_SNP [dm6]	T	A	4.590e^-4	0.835	INTERGENIC
2L	7085799	2L_7085799_SNP [dm3] 2L_7085799_SNP [dm6]	A	C	4.596e^-4	0.835	INTERGENIC
2L	3971677	2L_3971677_SNP [dm3] 2L_3971677_SNP [dm6]	T	A	4.596e^-4	0.835	INTRON fred
X	20364947	X_20364947_SNP [dm3] X_20493920_SNP [dm6]	G	T	4.614e^-4	0.835	INTRON RhoGAP19D
X	12179916	X_12179916_SNP [dm3] X_12285883_SNP [dm6]	C	T	4.619e^-4	0.835	SYNONYMOUS_CODING Ten-a	TF binding site mE1_TFBS_chinmo
3L	2480032	3L_2480032_SNP [dm3] 3L_2480032_SNP [dm6]	G	A	4.620e^-4	0.835	INTRON CG45186	TF binding site BDTNP1_TFBS_twi
2R	7476171	2R_7476171_DEL [dm3] 2R_11588666_DEL [dm6]	TATG	T	4.628e^-4	0.835	UPSTREAM snoRNA:Psi28S-1936 INTRON tou	TF binding site mE1_TFBS_cad
X	6933324	X_6933324_SNP [dm3] X_7039291_SNP [dm6]	C	G	4.629e^-4	0.835	INTRON CG12541	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	6034843	3R_6034843_DEL [dm3] 3R_10209121_DEL [dm6]	TTACT	T	4.640e^-4	0.835	INTRON Syn & 1 other
2L	10842701	2L_10842701_INS [dm3] 2L_10842701_INS [dm6]	G	GCGG	4.640e^-4	0.835	UPSTREAM CG6700 DOWNSTREAM CG17139 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21210243	3R_21210243_SNP [dm3] 3R_25384521_SNP [dm6]	A	G	4.642e^-4	0.835	NON_SYNONYMOUS_CODING CG31437 DOWNSTREAM Fur1 INTRON Fur1
2L	16302818	2L_16302818_SNP [dm3] 2L_16302818_SNP [dm6]	C	A	4.646e^-4	0.835	UTR_5_PRIME CG5869 UPSTREAM c_2_M	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA
3L	12444087	3L_12444087_DEL [dm3] 3L_12450987_DEL [dm6]	TACATATATCT...	T	4.646e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

mn_AlcoholTolerance phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results