DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.522e^-8)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_Mo	6.0845	0.0477

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1865 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	16665002	2R_16665002_SNP [dm3] 2R_20777497_SNP [dm6]	G	A	1.052e^-7	0.197	NON_SYNONYMOUS_CODING CG43710 DOWNSTREAM CG43711
2R	16664864	2R_16664864_SNP [dm3] 2R_20777359_SNP [dm6]	G	A	1.605e^-6	0.889	NON_SYNONYMOUS_CODING CG43710 UPSTREAM CG43709 DOWNSTREAM CG43711
3R	25019909	3R_25019909_SNP [dm3] 3R_29194187_SNP [dm6]	A	G	3.024e^-6	0.889	INTRON CG14509
3R	10927978	3R_10927978_SNP [dm3] 3R_15102256_SNP [dm6]	C	G	3.384e^-6	0.889	INTRON CG42788
3L	15660911	3L_15660911_SNP [dm3] 3L_15667811_SNP [dm6]	C	A	3.450e^-6	0.889	INTERGENIC
3R	13345288	3R_13345288_SNP [dm3] 3R_17519566_SNP [dm6]	G	A	3.510e^-6	0.889	UPSTREAM CR44349 INTERGENIC
3R	13045083	3R_13045083_SNP [dm3] 3R_17219361_SNP [dm6]	C	T	3.595e^-6	0.889	SYNONYMOUS_CODING CG31262
X	5599519	X_5599519_SNP [dm3] X_5705486_SNP [dm6]	A	T	3.790e^-6	0.889	INTRON CG4096	TF binding site mE1_TFBS_HSA mE1_TFBS_run
3R	13345176	3R_13345176_SNP [dm3] 3R_17519454_SNP [dm6]	A	C	5.511e^-6	0.929	UPSTREAM CR44349 INTERGENIC
3L	4337857	3L_4337857_SNP [dm3] 3L_4337857_SNP [dm6]	A	G	5.648e^-6	0.929	INTRON Cip4
3R	14679036	3R_14679036_SNP [dm3] 3R_18853314_SNP [dm6]	A	C	6.064e^-6	0.929	INTERGENIC
X	5746480	X_5746480_SNP [dm3] X_5852447_SNP [dm6]	A	G	7.612e^-6	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11939564	2L_11939564_SNP [dm3] 2L_11939564_SNP [dm6]	G	A	8.218e^-6	0.929	DOWNSTREAM Or33c INTERGENIC
2L	6844325	2L_6844325_SNP [dm3] 2L_6844325_SNP [dm6]	A	G	9.363e^-6	0.929	INTERGENIC
3R	13045071	3R_13045071_SNP [dm3] 3R_17219349_SNP [dm6]	G	A	9.583e^-6	0.929	SYNONYMOUS_CODING CG31262
3R	16302386	3R_16302386_SNP [dm3] 3R_20476664_SNP [dm6]	C	G	9.655e^-6	0.929	INTRON Gfrl
3R	9900608	3R_9900608_SNP [dm3] 3R_14074886_SNP [dm6]	A	G	1.114e^-5	0.929	INTRON foxo
2R	2495968	2R_2495968_DEL [dm3] 2R_6608463_DEL [dm6]	CCACATACGCAAAC...	C	1.122e^-5	0.929	INTRON jing	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11948886	2R_11948886_SNP [dm3] 2R_16061381_SNP [dm6]	T	C	1.281e^-5	0.929	DOWNSTREAM CG8405 INTERGENIC
3L	5782179	3L_5782179_SNP [dm3] 3L_5789079_SNP [dm6]	A	C	1.300e^-5	0.929	DOWNSTREAM Bre1 INTERGENIC
2R	10568729	2R_10568729_SNP [dm3] 2R_14681224_SNP [dm6]	A	G	1.349e^-5	0.929	INTRON mspo
2L	11789804	2L_11789804_SNP [dm3] 2L_11789804_SNP [dm6]	A	G	1.460e^-5	0.929	UPSTREAM CG14932 DOWNSTREAM CG14931 INTERGENIC
3L	16722891	3L_16722891_SNP [dm3] 3L_16729791_SNP [dm6]	C	T	1.509e^-5	0.929	INTRON Dbp73D	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14943930	3L_14943930_SNP [dm3] 3L_14950830_SNP [dm6]	A	G	1.560e^-5	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13345180	3R_13345180_SNP [dm3] 3R_17519458_SNP [dm6]	T	C	1.631e^-5	0.929	UPSTREAM CR44349 INTERGENIC
3R	16307019	3R_16307019_SNP [dm3] 3R_20481297_SNP [dm6]	A	G	1.781e^-5	0.929	UTR_5_PRIME Gfrl INTRON Gfrl
X	3320777	X_3320777_SNP [dm3] X_3426744_SNP [dm6]	C	G	1.796e^-5	0.929	DOWNSTREAM tRNA:CR32493 INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl
X	5599341	X_5599341_SNP [dm3] X_5705308_SNP [dm6]	T	C	1.853e^-5	0.929	INTRON CG4096	TF binding site mE1_TFBS_HSA mE1_TFBS_run
3R	25019888	3R_25019888_SNP [dm3] 3R_29194166_SNP [dm6]	T	G	2.075e^-5	0.929	INTRON CG14509
X	8349240	X_8349240_SNP [dm3] X_8455207_SNP [dm6]	C	T	2.088e^-5	0.929	UPSTREAM org-1 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17721049	3L_17721049_SNP [dm3] 3L_17727949_SNP [dm6]	A	G	2.110e^-5	0.929	SYNONYMOUS_CODING CG6052 INTRON Ccn	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	18681169	3R_18681169_SNP [dm3] 3R_22855447_SNP [dm6]	T	A	2.137e^-5	0.929	INTERGENIC
2L	11789798	2L_11789798_SNP [dm3] 2L_11789798_SNP [dm6]	A	G	2.210e^-5	0.929	UPSTREAM CG14932 DOWNSTREAM CG14931 INTERGENIC
X	12319601	X_12319601_SNP [dm3] X_12425568_SNP [dm6]	A	G	2.231e^-5	0.929	INTERGENIC
3L	4337733	3L_4337733_INS [dm3] 3L_4337733_INS [dm6]	A	GG	2.493e^-5	0.929	INTRON Cip4
3R	17828710	3R_17828710_SNP [dm3] 3R_22002988_SNP [dm6]	A	C	2.545e^-5	0.929	INTRON Eip93F
2L	14590330	2L_14590330_SNP [dm3] 2L_14590330_SNP [dm6]	T	C	2.551e^-5	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15385404	3L_15385404_SNP [dm3] 3L_15392304_SNP [dm6]	A	T	3.015e^-5	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14415764	2L_14415764_SNP [dm3] 2L_14415764_SNP [dm6]	G	A	3.143e^-5	0.929	DOWNSTREAM Pburs INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	21742611	3R_21742611_SNP [dm3] 3R_25916889_SNP [dm6]	A	T	3.218e^-5	0.929	NON_SYNONYMOUS_CODING CG42235 INTRON CG42235
3R	14042424	3R_14042424_SNP [dm3] 3R_18216702_SNP [dm6]	A	G	3.296e^-5	0.929	INTRON CG14314	TF binding site mE1_TFBS_cad
3L	16722875	3L_16722875_SNP [dm3] 3L_16729775_SNP [dm6]	G	T	3.304e^-5	0.929	SPLICE_SITE_REGION Dbp73D SYNONYMOUS_CODING Dbp73D	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17720959	3L_17720959_SNP [dm3] 3L_17727859_SNP [dm6]	A	G	3.330e^-5	0.929	SYNONYMOUS_CODING CG6052 INTRON Ccn	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	13373610	X_13373610_SNP [dm3] X_13479577_SNP [dm6]	A	C	3.428e^-5	0.929	INTRON Neto
2L	19224096	2L_19224096_SNP [dm3] 2L_19224096_SNP [dm6]	C	T	3.460e^-5	0.929	INTERGENIC
3L	1276160	3L_1276160_SNP [dm3] 3L_1276160_SNP [dm6]	A	G	3.490e^-5	0.929	UTR_5_PRIME CG32333	TF binding site mE1_TFBS_Trl
X	19178888	X_19178888_SNP [dm3] X_19284855_SNP [dm6]	G	A	3.628e^-5	0.929	UPSTREAM CG8034 INTRON CG8034	TF binding site mE1_TFBS_chinmo
X	19178898	X_19178898_SNP [dm3] X_19284865_SNP [dm6]	G	A	3.628e^-5	0.929	UPSTREAM CG8034 INTRON CG8034	TF binding site mE1_TFBS_chinmo
X	19178925	X_19178925_INS [dm3] X_19284892_INS [dm6]	A	ATCGACACTA	3.628e^-5	0.929	UPSTREAM CG8034 INTRON CG8034	TF binding site mE1_TFBS_chinmo
3L	11184232	3L_11184232_SNP [dm3] 3L_11191132_SNP [dm6]	T	C	3.661e^-5	0.929	INTRON GlcAT-P
3L	15660667	3L_15660667_SNP [dm3] 3L_15667567_SNP [dm6]	G	A	3.713e^-5	0.929	INTERGENIC
X	20472553	X_20472553_SNP [dm3] X_20601526_SNP [dm6]	A	G	3.740e^-5	0.929	INTRON RunxA
2L	21355857	2L_21355857_SNP [dm3] 2L_21355857_SNP [dm6]	C	T	3.836e^-5	0.929	INTRON Tsp39D
3L	17163163	3L_17163163_SNP [dm3] 3L_17170063_SNP [dm6]	A	T	3.895e^-5	0.929	INTRON Rbp6
3R	13345303	3R_13345303_SNP [dm3] 3R_17519581_SNP [dm6]	G	C	3.931e^-5	0.929	UPSTREAM CR44349 INTERGENIC
X	19178936	X_19178936_SNP [dm3] X_19284903_SNP [dm6]	C	T	3.968e^-5	0.929	UPSTREAM CG8034 INTRON CG8034
3R	11270162	3R_11270162_SNP [dm3] 3R_15444440_SNP [dm6]	G	A	4.023e^-5	0.929	SYNONYMOUS_CODING AdamTS-A	TF binding site mE1_TFBS_cad
2L	19799210	2L_19799210_SNP [dm3] 2L_19799210_SNP [dm6]	A	T	4.243e^-5	0.929	INTRON sick
X	17561219	X_17561219_SNP [dm3] X_17667186_SNP [dm6]	T	C	4.400e^-5	0.929	SYNONYMOUS_CODING beta-Spec	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	3259139	2R_3259139_SNP [dm3] 2R_7371634_SNP [dm6]	C	G	4.436e^-5	0.929	INTRON Dscam1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	19869083	2L_19869083_SNP [dm3] 2L_19869083_SNP [dm6]	C	T	4.510e^-5	0.929	INTRON sick	TF binding site BDTNP1_TFBS_da mE1_TFBS_D mE1_TFBS_HSA
3R	9904999	3R_9904999_SNP [dm3] 3R_14079277_SNP [dm6]	A	T	4.896e^-5	0.929	INTRON foxo	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	21708549	3R_21708549_SNP [dm3] 3R_25882827_SNP [dm6]	T	A	4.935e^-5	0.929	INTRON SppL	TF binding site BDTNP1_TFBS_dl
X	10815196	X_10815196_SNP [dm3] X_10921163_SNP [dm6]	G	T	4.939e^-5	0.929	UTR_3_PRIME CG43901	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14590313	2L_14590313_SNP [dm3] 2L_14590313_SNP [dm6]	T	A	5.018e^-5	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12677017	3L_12677017_SNP [dm3] 3L_12683917_SNP [dm6]	T	A	5.029e^-5	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10102597	3L_10102597_SNP [dm3] 3L_10109497_SNP [dm6]	C	A	5.127e^-5	0.929	INTRON dpr6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2L	1444778	2L_1444778_SNP [dm3] 2L_1444778_SNP [dm6]	G	T	5.165e^-5	0.929	DOWNSTREAM CG43402 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2167567	3R_2167567_SNP [dm3] 3R_6341845_SNP [dm6]	T	C	5.176e^-5	0.929	UPSTREAM CG17917 DOWNSTREAM Osi20 INTERGENIC
3L	16723588	3L_16723588_SNP [dm3] 3L_16730488_SNP [dm6]	A	C	5.195e^-5	0.929	NON_SYNONYMOUS_CODING Dbp73D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	2169358	3L_2169358_DEL [dm3] 3L_2169358_DEL [dm6]	TT	T	5.225e^-5	0.929	UPSTREAM CG15879 DOWNSTREAM CG5704 INTERGENIC
3R	13045227	3R_13045227_SNP [dm3] 3R_17219505_SNP [dm6]	C	T	5.249e^-5	0.929	INTRON CG31262
2L	2048038	2L_2048038_SNP [dm3] 2L_2048038_SNP [dm6]	A	G	5.282e^-5	0.929	UTR_3_PRIME Kebab DOWNSTREAM Kebab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5291760	2R_5291760_SNP [dm3] 2R_9404255_SNP [dm6]	T	C	5.379e^-5	0.929	INTRON wun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	11089930	3R_11089930_SNP [dm3] 3R_15264208_SNP [dm6]	A	C	5.522e^-5	0.929	UPSTREAM Su_var_3-9 & 1 other INTRON Set	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
X	15154121	X_15154121_SNP [dm3] X_15260088_SNP [dm6]	C	A	5.552e^-5	0.929	INTERGENIC
X	2831578	X_2831578_SNP [dm3] X_2937545_SNP [dm6]	G	A	5.816e^-5	0.929	NON_SYNONYMOUS_CODING CG3598 INTRON kirre	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16977130	3R_16977130_SNP [dm3] 3R_21151408_SNP [dm6]	G	A	5.889e^-5	0.929	INTRON SNF4Agamma
2L	19799209	2L_19799209_SNP [dm3] 2L_19799209_SNP [dm6]	A	T	5.894e^-5	0.929	INTRON sick
2L	14590987	2L_14590987_SNP [dm3] 2L_14590987_SNP [dm6]	T	A	5.995e^-5	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19225415	2L_19225415_SNP [dm3] 2L_19225415_SNP [dm6]	A	C	6.151e^-5	0.929	INTERGENIC
3L	15609564	3L_15609564_INS [dm3] 3L_15616464_INS [dm6]	A	AA	6.196e^-5	0.929	INTRON comm3
3R	2048107	3R_2048107_SNP [dm3] 3R_6222385_SNP [dm6]	C	A	6.239e^-5	0.929	UPSTREAM Osi4 INTERGENIC	TF binding site mE1_TFBS_cad
2L	17663805	2L_17663805_SNP [dm3] 2L_17663805_SNP [dm6]	G	A	6.311e^-5	0.929	INTRON CadN
2L	14590323	2L_14590323_MNP [dm3] 2L_14590323_MNP [dm6]	CAAGT	TTTCA	6.314e^-5	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2180898	3L_2180898_SNP [dm3] 3L_2180898_SNP [dm6]	A	C	6.339e^-5	0.929	INTERGENIC
2L	7183468	2L_7183468_SNP [dm3] 2L_7183468_SNP [dm6]	A	C	6.415e^-5	0.929	INTRON CG4495	TF binding site BDTNP1_TFBS_twi
2L	12088471	2L_12088471_SNP [dm3] 2L_12088471_SNP [dm6]	C	T	6.499e^-5	0.929	DOWNSTREAM CR44593 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
X	10814890	X_10814890_SNP [dm3] X_10920857_SNP [dm6]	A	T	6.513e^-5	0.929	UTR_3_PRIME CG43901	TF binding site BDTNP1_TFBS_dl
2L	10500558	2L_10500558_SNP [dm3] 2L_10500558_SNP [dm6]	C	T	6.572e^-5	0.929	INTRON Myo31DF
X	12404884	X_12404884_SNP [dm3] X_12510851_SNP [dm6]	A	C	6.583e^-5	0.929	INTRON CG2556
3R	13345207	3R_13345207_SNP [dm3] 3R_17519485_SNP [dm6]	C	A	6.606e^-5	0.929	UPSTREAM CR44349 INTERGENIC
3L	2757914	3L_2757914_SNP [dm3] 3L_2757914_SNP [dm6]	T	A	6.636e^-5	0.929	INTRON Mrtf	TF binding site BDTNP1_TFBS_twi
2R	10571811	2R_10571811_SNP [dm3] 2R_14684306_SNP [dm6]	G	T	6.638e^-5	0.929	SYNONYMOUS_CODING mspo
3L	14578925	3L_14578925_SNP [dm3] 3L_14585825_SNP [dm6]	G	A	6.644e^-5	0.929	INTRON HGTX	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	9914252	3R_9914252_SNP [dm3] 3R_14088530_SNP [dm6]	G	A	6.798e^-5	0.929	UPSTREAM Npc2b DOWNSTREAM foxo INTERGENIC	TF binding site mE1_TFBS_bab1
X	19178930	X_19178930_SNP [dm3] X_19284897_SNP [dm6]	C	A	6.921e^-5	0.929	UPSTREAM CG8034 INTRON CG8034
3L	2698458	3L_2698458_SNP [dm3] 3L_2698458_SNP [dm6]	G	A	6.958e^-5	0.929	INTRON Fife
3R	2136550	3R_2136550_SNP [dm3] 3R_6310828_SNP [dm6]	G	A	7.023e^-5	0.929	NON_SYNONYMOUS_CODING CG31560 UPSTREAM Osi17	TF binding site mE1_TFBS_HSA
3L	15660545	3L_15660545_SNP [dm3] 3L_15667445_SNP [dm6]	A	C	7.108e^-5	0.929	INTERGENIC
2R	13055838	2R_13055838_SNP [dm3] 2R_17168333_SNP [dm6]	C	T	7.245e^-5	0.929	INTERGENIC
2L	11361146	2L_11361146_SNP [dm3] 2L_11361146_SNP [dm6]	C	T	7.259e^-5	0.929	INTRON salr	regulatory region REDfly_CRMs
3R	16291477	3R_16291477_SNP [dm3] 3R_20465755_SNP [dm6]	T	G	7.260e^-5	0.929	INTRON Gfrl
3R	14051625	3R_14051625_SNP [dm3] 3R_18225903_SNP [dm6]	G	T	7.304e^-5	0.929	SPLICE_SITE_REGION CG7168 UTR_5_PRIME CG7168 UPSTREAM Mdh2 DOWNSTREAM CG7993	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	14943970	3L_14943970_SNP [dm3] 3L_14950870_SNP [dm6]	A	G	7.400e^-5	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	10740245	3L_10740245_SNP [dm3] 3L_10747145_SNP [dm6]	A	T	7.464e^-5	0.929	INTERGENIC
X	13234024	X_13234024_INS [dm3] X_13339991_INS [dm6]	A	AA	7.487e^-5	0.929	UTR_3_PRIME CG15747
X	3798177	X_3798177_SNP [dm3] X_3904144_SNP [dm6]	G	C	7.600e^-5	0.929	NON_SYNONYMOUS_CODING CG42541
3L	5884425	3L_5884425_SNP [dm3] 3L_5891325_SNP [dm6]	A	G	7.601e^-5	0.929	INTERGENIC
2L	2045958	2L_2045958_SNP [dm3] 2L_2045958_SNP [dm6]	A	G	7.605e^-5	0.929	SYNONYMOUS_CODING Kebab UPSTREAM CR45298	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2833704	3L_2833704_SNP [dm3] 3L_2833704_SNP [dm6]	T	A	7.620e^-5	0.929	INTRON CG43444
3R	11265250	3R_11265250_SNP [dm3] 3R_15439528_SNP [dm6]	G	A	7.780e^-5	0.929	UPSTREAM Act88F INTERGENIC	regulatory region REDfly_CRMs
3L	10102540	3L_10102540_SNP [dm3] 3L_10109440_SNP [dm6]	T	A	7.797e^-5	0.929	INTRON dpr6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3R	7962194	3R_7962194_SNP [dm3] 3R_12136472_SNP [dm6]	A	G	7.871e^-5	0.929	INTERGENIC
2L	19801201	2L_19801201_SNP [dm3] 2L_19801201_SNP [dm6]	A	C	8.002e^-5	0.929	INTRON sick
3R	17828725	3R_17828725_SNP [dm3] 3R_22003003_SNP [dm6]	T	A	8.109e^-5	0.929	INTRON Eip93F
3R	14721238	3R_14721238_SNP [dm3] 3R_18895516_SNP [dm6]	T	A	8.241e^-5	0.929	INTERGENIC
X	20232360	X_20232360_INS [dm3] X_20361333_INS [dm6]	AA	TTTG	8.296e^-5	0.929	INTERGENIC
X	6008355	X_6008355_SNP [dm3] X_6114322_SNP [dm6]	A	G	8.349e^-5	0.929	SYNONYMOUS_CODING Ca-alpha1T	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	10815015	X_10815015_SNP [dm3] X_10920982_SNP [dm6]	A	T	8.411e^-5	0.929	UTR_3_PRIME CG43901	TF binding site BDTNP1_TFBS_dl
3L	14944013	3L_14944013_DEL [dm3] 3L_14950913_DEL [dm6]	AA	A	8.499e^-5	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	9686142	2R_9686142_SNP [dm3] 2R_13798637_SNP [dm6]	G	A	8.608e^-5	0.929	INTRON Cpr50Cb
2L	14590314	2L_14590314_SNP [dm3] 2L_14590314_SNP [dm6]	G	C	8.696e^-5	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25019916	3R_25019916_SNP [dm3] 3R_29194194_SNP [dm6]	T	C	8.985e^-5	0.929	INTRON CG14509
2L	19856052	2L_19856052_SNP [dm3] 2L_19856052_SNP [dm6]	C	A	9.006e^-5	0.929	INTRON sick
2L	14189445	2L_14189445_SNP [dm3] 2L_14189445_SNP [dm6]	A	C	9.032e^-5	0.929	INTRON Dyrk2
3R	14813559	3R_14813559_SNP [dm3] 3R_18987837_SNP [dm6]	C	T	9.184e^-5	0.929	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	11089295	3R_11089295_SNP [dm3] 3R_15263573_SNP [dm6]	C	T	9.519e^-5	0.929	START_GAINED Set UTR_5_PRIME Set UPSTREAM eIF-2gamma & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2L	15024972	2L_15024972_SNP [dm3] 2L_15024972_SNP [dm6]	A	G	9.554e^-5	0.929	INTRON GABA-B-R1
3R	25019935	3R_25019935_SNP [dm3] 3R_29194213_SNP [dm6]	T	C	9.667e^-5	0.929	INTRON CG14509
X	13035758	X_13035758_SNP [dm3] X_13141725_SNP [dm6]	T	G	9.678e^-5	0.929	INTRON CG32645
3L	5782180	3L_5782180_SNP [dm3] 3L_5789080_SNP [dm6]	C	A	9.697e^-5	0.929	DOWNSTREAM Bre1 INTERGENIC
3R	13363712	3R_13363712_SNP [dm3] 3R_17537990_SNP [dm6]	C	T	9.717e^-5	0.929	NON_SYNONYMOUS_CODING l_3_07882 DOWNSTREAM P5cr-2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18871780	2R_18871780_SNP [dm3] 2R_22984257_SNP [dm6]	A	G	9.737e^-5	0.929	SYNONYMOUS_CODING CG32834 DOWNSTREAM CG32833 & 1 other	TF binding site mE1_TFBS_cad
3L	15385802	3L_15385802_SNP [dm3] 3L_15392702_SNP [dm6]	T	G	9.740e^-5	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	2047724	2L_2047724_SNP [dm3] 2L_2047724_SNP [dm6]	C	T	9.777e^-5	0.929	UTR_3_PRIME Kebab	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20259065	3R_20259065_SNP [dm3] 3R_24433343_SNP [dm6]	T	C	9.818e^-5	0.929	INTRON nAChRalpha1
2L	12157051	2L_12157051_SNP [dm3] 2L_12157051_SNP [dm6]	T	A	9.857e^-5	0.929	INTRON CG31760
2L	2111337	2L_2111337_SNP [dm3] 2L_2111337_SNP [dm6]	C	T	9.926e^-5	0.929	INTERGENIC
3L	7463018	3L_7463018_SNP [dm3] 3L_7469918_SNP [dm6]	G	A	9.993e^-5	0.929	SYNONYMOUS_CODING CG8543
2L	12724301	2L_12724301_SNP [dm3] 2L_12724301_SNP [dm6]	G	A	1.009e^-4	0.929	SYNONYMOUS_CODING MRP	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15459539	3L_15459539_SNP [dm3] 3L_15466439_SNP [dm6]	G	C	1.018e^-4	0.929	INTERGENIC
3L	10102550	3L_10102550_SNP [dm3] 3L_10109450_SNP [dm6]	A	T	1.023e^-4	0.929	INTRON dpr6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
X	19120963	X_19120963_INS [dm3] X_19226930_INS [dm6]	A	AT	1.024e^-4	0.929	INTRON CG7884	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13680417	2L_13680417_SNP [dm3] 2L_13680417_SNP [dm6]	G	A	1.026e^-4	0.929	INTRON CG31814	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18311795	2R_18311795_SNP [dm3] 2R_22424290_SNP [dm6]	G	A	1.034e^-4	0.929	INTRON rad50
3R	14678214	3R_14678214_DEL [dm3] 3R_18852492_DEL [dm6]	CCTGCAGTCCGCC...	C	1.042e^-4	0.929	UPSTREAM CG31226 INTERGENIC
3L	15385362	3L_15385362_SNP [dm3] 3L_15392262_SNP [dm6]	G	A	1.042e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10929604	2L_10929604_SNP [dm3] 2L_10929604_SNP [dm6]	G	C	1.043e^-4	0.929	INTRON dpr2
3L	12179629	3L_12179629_SNP [dm3] 3L_12186529_SNP [dm6]	A	T	1.044e^-4	0.929	SPLICE_SITE_REGION CG6910 INTRON CG6910	TF binding site mE1_TFBS_cad
3L	12179631	3L_12179631_SNP [dm3] 3L_12186531_SNP [dm6]	C	T	1.044e^-4	0.929	SPLICE_SITE_REGION CG6910 INTRON CG6910	TF binding site mE1_TFBS_cad
3R	11089925	3R_11089925_SNP [dm3] 3R_15264203_SNP [dm6]	A	T	1.044e^-4	0.929	UPSTREAM Su_var_3-9 & 1 other INTRON Set	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3L	5910537	3L_5910537_SNP [dm3] 3L_5917437_SNP [dm6]	A	G	1.047e^-4	0.929	UTR_3_PRIME CG13288 UPSTREAM CR45167 DOWNSTREAM CG10483
3R	6430641	3R_6430641_SNP [dm3] 3R_10604919_SNP [dm6]	G	A	1.049e^-4	0.929	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	13378824	X_13378824_SNP [dm3] X_13484791_SNP [dm6]	T	C	1.055e^-4	0.929	INTRON Neto	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	6004774	X_6004774_SNP [dm3] X_6110741_SNP [dm6]	G	T	1.058e^-4	0.929	INTRON Ca-alpha1T	TF binding site BDTNP1_TFBS_dl
3L	3996913	3L_3996913_SNP [dm3] 3L_3996913_SNP [dm6]	G	A	1.065e^-4	0.929	INTERGENIC
3L	18365698	3L_18365698_SNP [dm3] 3L_18372598_SNP [dm6]	T	C	1.066e^-4	0.929	INTERGENIC
X	12319595	X_12319595_SNP [dm3] X_12425562_SNP [dm6]	C	T	1.066e^-4	0.929	INTERGENIC
3L	13848846	3L_13848846_SNP [dm3] 3L_13855746_SNP [dm6]	C	T	1.072e^-4	0.929	SPLICE_SITE_REGION Hml INTRON Hml
3L	10102556	3L_10102556_SNP [dm3] 3L_10109456_SNP [dm6]	T	C	1.073e^-4	0.929	INTRON dpr6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3R	13345492	3R_13345492_SNP [dm3] 3R_17519770_SNP [dm6]	C	T	1.078e^-4	0.929	UPSTREAM CR44349 INTERGENIC
2R	3492549	2R_3492549_SNP [dm3] 2R_7605044_SNP [dm6]	C	A	1.083e^-4	0.929	INTRON CG1358	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1944341	2L_1944341_SNP [dm3] 2L_1944341_SNP [dm6]	G	C	1.087e^-4	0.929	DOWNSTREAM CG7337 & 1 other INTERGENIC
X	14419620	X_14419620_SNP [dm3] X_14525587_SNP [dm6]	A	G	1.092e^-4	0.929	INTERGENIC
3R	14678110	3R_14678110_SNP [dm3] 3R_18852388_SNP [dm6]	G	A	1.107e^-4	0.929	UPSTREAM CG31226 INTERGENIC
X	12378559	X_12378559_SNP [dm3] X_12484526_SNP [dm6]	A	C	1.117e^-4	0.929	INTERGENIC
3L	12306067	3L_12306067_SNP [dm3] 3L_12312967_SNP [dm6]	G	T	1.118e^-4	0.929	INTERGENIC
3L	5206043	3L_5206043_INS [dm3] 3L_5212943_INS [dm6]	T	AAG	1.123e^-4	0.929	INTRON shep	TF binding site mE1_TFBS_HSA
3R	16049081	3R_16049081_INS [dm3] 3R_20223359_INS [dm6]	A	AA	1.134e^-4	0.929	INTRON Nlg4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13825153	X_13825153_SNP [dm3] X_13931120_SNP [dm6]	T	A	1.142e^-4	0.929	INTRON mamo
2L	14590339	2L_14590339_SNP [dm3] 2L_14590339_SNP [dm6]	A	T	1.148e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9018344	2L_9018344_SNP [dm3] 2L_9018344_SNP [dm6]	C	T	1.152e^-4	0.929	INTERGENIC
3R	13389796	3R_13389796_SNP [dm3] 3R_17564074_SNP [dm6]	C	T	1.159e^-4	0.929	INTRON Hmx
3L	14374994	3L_14374994_SNP [dm3] 3L_14381894_SNP [dm6]	T	C	1.164e^-4	0.929	UPSTREAM CG43120 INTERGENIC
2L	14595796	2L_14595796_SNP [dm3] 2L_14595796_SNP [dm6]	A	G	1.172e^-4	0.929	INTERGENIC
X	5601081	X_5601081_SNP [dm3] X_5707048_SNP [dm6]	C	T	1.173e^-4	0.929	SYNONYMOUS_CODING CG4096	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15662193	3L_15662193_SNP [dm3] 3L_15669093_SNP [dm6]	A	G	1.173e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	14042320	3R_14042320_SNP [dm3] 3R_18216598_SNP [dm6]	T	A	1.183e^-4	0.929	SYNONYMOUS_CODING CG14314	TF binding site mE1_TFBS_cad
3R	15823091	3R_15823091_SNP [dm3] 3R_19997369_SNP [dm6]	A	T	1.188e^-4	0.929	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24487288	3R_24487288_SNP [dm3] 3R_28661566_SNP [dm6]	G	C	1.194e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1971780	3L_1971780_SNP [dm3] 3L_1971780_SNP [dm6]	G	T	1.195e^-4	0.929	UTR_5_PRIME CG1139 UPSTREAM CG11815
X	10814875	X_10814875_SNP [dm3] X_10920842_SNP [dm6]	C	T	1.195e^-4	0.929	UTR_3_PRIME CG43901	TF binding site BDTNP1_TFBS_dl
X	16776395	X_16776395_SNP [dm3] X_16882362_SNP [dm6]	A	G	1.198e^-4	0.929	NON_SYNONYMOUS_CODING CG4872 DOWNSTREAM CG9104	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13284028	3L_13284028_INS [dm3] 3L_13290928_INS [dm6]	T	TT	1.200e^-4	0.929	DOWNSTREAM CR43912 EXON CR43912
2L	7916455	2L_7916455_SNP [dm3] 2L_7916455_SNP [dm6]	T	A	1.202e^-4	0.929	INTRON Snoo
2R	10034531	2R_10034531_DEL [dm3] 2R_14147026_DEL [dm6]	TT	T	1.210e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	12069047	2R_12069047_INS [dm3] 2R_16181542_INS [dm6]	T	TA	1.210e^-4	0.929	UTR_5_PRIME Lis-1 INTRON Lis-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14721239	3R_14721239_SNP [dm3] 3R_18895517_SNP [dm6]	C	T	1.239e^-4	0.929	INTERGENIC
3L	9332296	3L_9332296_SNP [dm3] 3L_9339196_SNP [dm6]	T	C	1.241e^-4	0.929	DOWNSTREAM PGRP-LA INTRON PGRP-LC
2L	14590308	2L_14590308_MNP [dm3] 2L_14590308_MNP [dm6]	TCGG	ATTA	1.254e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24807531	3R_24807531_SNP [dm3] 3R_28981809_SNP [dm6]	C	G	1.255e^-4	0.929	INTERGENIC
X	13234033	X_13234033_SNP [dm3] X_13340000_SNP [dm6]	A	G	1.260e^-4	0.929	UTR_3_PRIME CG15747
2L	1442696	2L_1442696_SNP [dm3] 2L_1442696_SNP [dm6]	C	G	1.263e^-4	0.929	UTR_5_PRIME CG43402 UPSTREAM CG43402
3R	14370769	3R_14370769_SNP [dm3] 3R_18545047_SNP [dm6]	C	T	1.289e^-4	0.929	INTRON fru	TF binding site BDTNP1_TFBS_dl
2L	21823485	2L_21823485_SNP [dm3] 2L_21823485_SNP [dm6]	T	G	1.299e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_cad
3L	834070	3L_834070_SNP [dm3] 3L_834070_SNP [dm6]	T	C	1.305e^-4	0.929	UPSTREAM CG42553 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	10628858	3L_10628858_SNP [dm3] 3L_10635758_SNP [dm6]	G	A	1.307e^-4	0.929	SYNONYMOUS_CODING E_z_
2L	11421174	2L_11421174_SNP [dm3] 2L_11421174_SNP [dm6]	G	A	1.308e^-4	0.929	INTERGENIC
X	19248752	X_19248752_SNP [dm3] X_19354719_SNP [dm6]	T	C	1.314e^-4	0.929	INTRON kek5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11937175	2L_11937175_SNP [dm3] 2L_11937175_SNP [dm6]	G	A	1.334e^-4	0.929	NON_SYNONYMOUS_CODING Or33b UPSTREAM Or33c
3L	13492047	3L_13492047_SNP [dm3] 3L_13498947_SNP [dm6]	G	T	1.338e^-4	0.929	INTRON Tgi
X	10814748	X_10814748_SNP [dm3] X_10920715_SNP [dm6]	T	C	1.343e^-4	0.929	UTR_3_PRIME CG43901	TF binding site BDTNP1_TFBS_dl
3L	12599305	3L_12599305_SNP [dm3] 3L_12606205_SNP [dm6]	T	C	1.353e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	2180921	3L_2180921_SNP [dm3] 3L_2180921_SNP [dm6]	C	T	1.357e^-4	0.929	INTERGENIC
3R	13345157	3R_13345157_SNP [dm3] 3R_17519435_SNP [dm6]	C	A	1.357e^-4	0.929	UPSTREAM CR44349 INTERGENIC
2L	15087604	2L_15087604_SNP [dm3] 2L_15087604_SNP [dm6]	C	T	1.363e^-4	0.929	SYNONYMOUS_CODING CG15270
3R	13045121	3R_13045121_SNP [dm3] 3R_17219399_SNP [dm6]	A	C	1.365e^-4	0.929	NON_SYNONYMOUS_CODING CG31262
X	5599481	X_5599481_SNP [dm3] X_5705448_SNP [dm6]	T	A	1.367e^-4	0.929	INTRON CG4096	TF binding site mE1_TFBS_HSA mE1_TFBS_run
3R	5718331	3R_5718331_SNP [dm3] 3R_9892609_SNP [dm6]	A	G	1.384e^-4	0.929	INTRON Glut4EF
3L	9331838	3L_9331838_SNP [dm3] 3L_9338738_SNP [dm6]	C	T	1.388e^-4	0.929	UPSTREAM PGRP-LC DOWNSTREAM PGRP-LA INTERGENIC
2R	1920914	2R_1920914_SNP [dm3] 2R_6033409_SNP [dm6]	C	A	1.393e^-4	0.929	INTRON SCAP	TF binding site BDTNP1_TFBS_dl
X	15645604	X_15645604_SNP [dm3] X_15751571_SNP [dm6]	A	T	1.396e^-4	0.929	UTR_3_PRIME CG8239 DOWNSTREAM Graf & 1 other
2R	9448644	2R_9448644_SNP [dm3] 2R_13561139_SNP [dm6]	G	C	1.407e^-4	0.929	DOWNSTREAM CG13334 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
X	15154154	X_15154154_SNP [dm3] X_15260121_SNP [dm6]	G	C	1.408e^-4	0.929	INTERGENIC
X	16609430	X_16609430_SNP [dm3] X_16715397_SNP [dm6]	A	T	1.411e^-4	0.929	INTRON CG34325
2L	11774646	2L_11774646_SNP [dm3] 2L_11774646_SNP [dm6]	G	A	1.411e^-4	0.929	INTERGENIC
2R	837772	2R_837772_SNP [dm3] 2R_4950267_SNP [dm6]	T	G	1.412e^-4	0.929	INTRON Ir41a
3L	15385309	3L_15385309_SNP [dm3] 3L_15392209_SNP [dm6]	G	T	1.413e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9095372	3R_9095372_SNP [dm3] 3R_13269650_SNP [dm6]	A	T	1.415e^-4	0.929	SYNONYMOUS_CODING CG8449 UTR_3_PRIME Su_var_3-7 DOWNSTREAM Su_var_3-7
3L	15385294	3L_15385294_SNP [dm3] 3L_15392194_SNP [dm6]	C	T	1.417e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11421196	2L_11421196_SNP [dm3] 2L_11421196_SNP [dm6]	T	C	1.418e^-4	0.929	INTERGENIC
3L	14944017	3L_14944017_SNP [dm3] 3L_14950917_SNP [dm6]	C	G	1.424e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	19322182	3R_19322182_SNP [dm3] 3R_23496460_SNP [dm6]	G	A	1.425e^-4	0.929	INTERGENIC
2L	11409903	2L_11409903_SNP [dm3] 2L_11409903_SNP [dm6]	T	C	1.431e^-4	0.929	INTERGENIC	regulatory region REDfly_CRMs
X	3030133	X_3030133_INS [dm3] X_3136100_INS [dm6]	T	TTTTCTGAACATTC...	1.438e^-4	0.929	INTRON N	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	11789862	2L_11789862_SNP [dm3] 2L_11789862_SNP [dm6]	T	A	1.451e^-4	0.929	UPSTREAM CG14932 DOWNSTREAM CG14931 INTERGENIC
2L	4273700	2L_4273700_SNP [dm3] 2L_4273700_SNP [dm6]	T	A	1.452e^-4	0.929	INTERGENIC
2L	11817040	2L_11817040_SNP [dm3] 2L_11817040_SNP [dm6]	A	T	1.455e^-4	0.929	INTRON Pde1c	TF binding site mE1_TFBS_cad
X	9560892	X_9560892_SNP [dm3] X_9666859_SNP [dm6]	A	G	1.461e^-4	0.929	UTR_3_PRIME nej
X	8349251	X_8349251_SNP [dm3] X_8455218_SNP [dm6]	C	T	1.473e^-4	0.929	UPSTREAM org-1 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11789881	2L_11789881_SNP [dm3] 2L_11789881_SNP [dm6]	T	A	1.474e^-4	0.929	UPSTREAM CG14932 DOWNSTREAM CG14931 INTERGENIC
3L	1276344	3L_1276344_SNP [dm3] 3L_1276344_SNP [dm6]	G	C	1.476e^-4	0.929	INTRON CG32333
2L	12101455	2L_12101455_SNP [dm3] 2L_12101455_SNP [dm6]	A	G	1.484e^-4	0.929	DOWNSTREAM Ced-12 INTRON Patsas
3L	13746322	3L_13746322_SNP [dm3] 3L_13753222_SNP [dm6]	A	G	1.489e^-4	0.929	INTRON bru-3
2L	4458921	2L_4458921_SNP [dm3] 2L_4458921_SNP [dm6]	G	T	1.491e^-4	0.929	UTR_3_PRIME mRpL27 UPSTREAM RpL27A & 1 other DOWNSTREAM mRpL27	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	2061490	3L_2061490_SNP [dm3] 3L_2061490_SNP [dm6]	C	G	1.511e^-4	0.929	NON_SYNONYMOUS_CODING sls INTRON sls
3L	21902964	3L_21902964_SNP [dm3] 3L_21909864_SNP [dm6]	T	G	1.512e^-4	0.929	INTRON mub	TF binding site mE1_TFBS_HSA
2L	16756776	2L_16756776_SNP [dm3] 2L_16756776_SNP [dm6]	T	C	1.512e^-4	0.929	INTRON yellow-b
3L	14352480	3L_14352480_SNP [dm3] 3L_14359380_SNP [dm6]	C	T	1.521e^-4	0.929	INTRON fz	TF binding site mE1_TFBS_HSA
2L	17664090	2L_17664090_SNP [dm3] 2L_17664090_SNP [dm6]	T	C	1.532e^-4	0.929	SYNONYMOUS_CODING CadN
2R	2504688	2R_2504688_SNP [dm3] 2R_6617183_SNP [dm6]	G	A	1.544e^-4	0.929	SYNONYMOUS_CODING jing	TF binding site mE1_TFBS_cad
3R	9900445	3R_9900445_SNP [dm3] 3R_14074723_SNP [dm6]	A	C	1.544e^-4	0.929	INTRON foxo
3L	17161312	3L_17161312_SNP [dm3] 3L_17168212_SNP [dm6]	A	G	1.550e^-4	0.929	DOWNSTREAM CR43433 INTRON Rbp6
3R	25582774	3R_25582774_SNP [dm3] 3R_29757052_SNP [dm6]	A	G	1.557e^-4	0.929	INTRON CR44953
3R	13347908	3R_13347908_SNP [dm3] 3R_17522186_SNP [dm6]	A	G	1.562e^-4	0.929	INTERGENIC
3R	10914133	3R_10914133_SNP [dm3] 3R_15088411_SNP [dm6]	C	A	1.580e^-4	0.929	INTRON CG6966
X	16609875	X_16609875_SNP [dm3] X_16715842_SNP [dm6]	C	T	1.580e^-4	0.929	INTRON CG34325
2R	17400380	2R_17400380_SNP [dm3] 2R_21512875_SNP [dm6]	T	C	1.590e^-4	0.929	DOWNSTREAM MESK2 INTRON MESK2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	20706410	2L_20706410_SNP [dm3] 2L_20706410_SNP [dm6]	T	G	1.591e^-4	0.929	INTRON Hr38
2R	839876	2R_839876_SNP [dm3] 2R_4952371_SNP [dm6]	G	A	1.598e^-4	0.929	INTRON Ir41a	transposable element FlyBase
2L	16756774	2L_16756774_SNP [dm3] 2L_16756774_SNP [dm6]	A	G	1.601e^-4	0.929	INTRON yellow-b
3R	18279979	3R_18279979_SNP [dm3] 3R_22454257_SNP [dm6]	T	C	1.607e^-4	0.929	INTRON CG34376	TF binding site mE1_TFBS_cad
2L	3394174	2L_3394174_SNP [dm3] 2L_3394174_SNP [dm6]	T	A	1.613e^-4	0.929	INTERGENIC
2L	9018373	2L_9018373_SNP [dm3] 2L_9018373_SNP [dm6]	C	T	1.620e^-4	0.929	INTERGENIC
3L	5984139	3L_5984139_SNP [dm3] 3L_5991039_SNP [dm6]	T	G	1.627e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	15111816	X_15111816_SNP [dm3] X_15217783_SNP [dm6]	A	G	1.627e^-4	0.929	INTERGENIC
2L	19801194	2L_19801194_SNP [dm3] 2L_19801194_SNP [dm6]	G	A	1.635e^-4	0.929	INTRON sick
3L	13491576	3L_13491576_SNP [dm3] 3L_13498476_SNP [dm6]	T	G	1.640e^-4	0.929	INTRON Tgi
3R	26111881	3R_26111881_SNP [dm3] 3R_30286159_SNP [dm6]	A	G	1.641e^-4	0.929	INTRON hdc
3L	12456837	3L_12456837_SNP [dm3] 3L_12463737_SNP [dm6]	T	C	1.641e^-4	0.929	SYNONYMOUS_CODING eyg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14635035	X_14635035_SNP [dm3] X_14741002_SNP [dm6]	G	A	1.666e^-4	0.929	INTRON NetB	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4916894	3R_4916894_SNP [dm3] 3R_9091172_SNP [dm6]	G	A	1.684e^-4	0.929	INTRON pum
2L	14982334	2L_14982334_SNP [dm3] 2L_14982334_SNP [dm6]	A	T	1.691e^-4	0.929	INTRON mol
3R	14041245	3R_14041245_DEL [dm3] 3R_18215523_DEL [dm6]	CAGA	C	1.691e^-4	0.929	UPSTREAM CG14314 DOWNSTREAM CG7985 INTERGENIC
2L	19754591	2L_19754591_SNP [dm3] 2L_19754591_SNP [dm6]	C	G	1.696e^-4	0.929	INTRON CG10631	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	11180298	2L_11180298_SNP [dm3] 2L_11180298_SNP [dm6]	A	C	1.696e^-4	0.929	UTR_3_PRIME CG4788 DOWNSTREAM CG4788 INTRON Ca-beta
3L	18377792	3L_18377792_SNP [dm3] 3L_18384692_SNP [dm6]	A	G	1.701e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_inv
3R	24766241	3R_24766241_SNP [dm3] 3R_28940519_SNP [dm6]	C	T	1.704e^-4	0.929	INTRON CG14521	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1791137	2L_1791137_SNP [dm3] 2L_1791137_SNP [dm6]	A	G	1.710e^-4	0.929	SYNONYMOUS_CODING Gr22c UPSTREAM Gr22d DOWNSTREAM Gr22b
2L	10502556	2L_10502556_SNP [dm3] 2L_10502556_SNP [dm6]	A	G	1.717e^-4	0.929	INTRON Myo31DF
3L	15385393	3L_15385393_SNP [dm3] 3L_15392293_SNP [dm6]	T	C	1.729e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2056605	2L_2056605_SNP [dm3] 2L_2056605_SNP [dm6]	C	G	1.750e^-4	0.929	INTRON Or22c
2L	19860756	2L_19860756_SNP [dm3] 2L_19860756_SNP [dm6]	C	T	1.774e^-4	0.929	INTRON sick	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	21926351	3L_21926351_SNP [dm3] 3L_21933251_SNP [dm6]	C	T	1.776e^-4	0.929	DOWNSTREAM mub INTERGENIC
X	18393110	X_18393110_SNP [dm3] X_18499077_SNP [dm6]	G	A	1.778e^-4	0.929	INTRON GalNAc-T2	TF binding site BDTNP1_TFBS_dl
2R	3259137	2R_3259137_SNP [dm3] 2R_7371632_SNP [dm6]	T	A	1.779e^-4	0.929	INTRON Dscam1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	18745985	2R_18745985_SNP [dm3] 2R_22858462_SNP [dm6]	C	G	1.786e^-4	0.929	INTRON inaD
2R	14020531	2R_14020531_SNP [dm3] 2R_18133026_SNP [dm6]	G	A	1.786e^-4	0.929	SYNONYMOUS_CODING Hsf	TF binding site BDTNP1_TFBS_dl
X	15111724	X_15111724_SNP [dm3] X_15217691_SNP [dm6]	C	T	1.801e^-4	0.929	INTERGENIC
2L	19224106	2L_19224106_SNP [dm3] 2L_19224106_SNP [dm6]	G	A	1.807e^-4	0.929	INTERGENIC
3R	18275457	3R_18275457_SNP [dm3] 3R_22449735_SNP [dm6]	G	C	1.809e^-4	0.929	INTRON CG34376	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
X	5599627	X_5599627_SNP [dm3] X_5705594_SNP [dm6]	C	T	1.811e^-4	0.929	INTRON CG4096	TF binding site mE1_TFBS_run
X	13378709	X_13378709_SNP [dm3] X_13484676_SNP [dm6]	A	G	1.815e^-4	0.929	INTRON Neto	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	21356013	2L_21356013_SNP [dm3] 2L_21356013_SNP [dm6]	A	T	1.816e^-4	0.929	INTRON Tsp39D
2R	9880383	2R_9880383_SNP [dm3] 2R_13992878_SNP [dm6]	A	T	1.820e^-4	0.929	INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	11939433	2L_11939433_SNP [dm3] 2L_11939433_SNP [dm6]	C	T	1.830e^-4	0.929	DOWNSTREAM Or33c INTERGENIC
X	3434547	X_3434547_SNP [dm3] X_3540514_SNP [dm6]	T	G	1.834e^-4	0.929	INTRON CG32791
3L	15387303	3L_15387303_SNP [dm3] 3L_15394203_SNP [dm6]	C	T	1.842e^-4	0.929	INTERGENIC
2L	5582399	2L_5582399_SNP [dm3] 2L_5582399_SNP [dm6]	C	A	1.849e^-4	0.929	INTERGENIC
X	18406653	X_18406653_SNP [dm3] X_18512620_SNP [dm6]	C	G	1.851e^-4	0.929	UPSTREAM Ggt-1 DOWNSTREAM CG6470 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7951629	3L_7951629_SNP [dm3] 3L_7958529_SNP [dm6]	C	A	1.852e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8128550	3R_8128550_SNP [dm3] 3R_12302828_SNP [dm6]	T	C	1.852e^-4	0.929	DOWNSTREAM svp INTERGENIC	TF binding site mE1_TFBS_inv
3R	11265027	3R_11265027_SNP [dm3] 3R_15439305_SNP [dm6]	A	T	1.856e^-4	0.929	UPSTREAM Act88F INTERGENIC	regulatory region REDfly_CRMs
X	12319596	X_12319596_SNP [dm3] X_12425563_SNP [dm6]	T	C	1.858e^-4	0.929	INTERGENIC
3R	16305473	3R_16305473_SNP [dm3] 3R_20479751_SNP [dm6]	T	C	1.861e^-4	0.929	INTRON Gfrl
3L	2180902	3L_2180902_SNP [dm3] 3L_2180902_SNP [dm6]	A	G	1.870e^-4	0.929	INTERGENIC
2R	8366755	2R_8366755_SNP [dm3] 2R_12479250_SNP [dm6]	A	G	1.881e^-4	0.929	INTRON Dh44-R2	TF binding site mE1_TFBS_chinmo
2L	19801191	2L_19801191_SNP [dm3] 2L_19801191_SNP [dm6]	A	G	1.890e^-4	0.929	INTRON sick
X	16609804	X_16609804_DEL [dm3] X_16715771_DEL [dm6]	ATGTA	A	1.893e^-4	0.929	INTRON CG34325
X	18406692	X_18406692_INS [dm3] X_18512659_INS [dm6]	T	TTGATATT	1.894e^-4	0.929	UPSTREAM Ggt-1 DOWNSTREAM CG6470 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3517555	2R_3517555_SNP [dm3] 2R_7630050_SNP [dm6]	T	C	1.905e^-4	0.929	INTRON CG43340	TF binding site mE1_TFBS_cad
2R	3259134	2R_3259134_SNP [dm3] 2R_7371629_SNP [dm6]	T	C	1.910e^-4	0.929	INTRON Dscam1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	12101449	2L_12101449_SNP [dm3] 2L_12101449_SNP [dm6]	C	T	1.915e^-4	0.929	DOWNSTREAM Ced-12 INTRON Patsas
3L	18368589	3L_18368589_SNP [dm3] 3L_18375489_SNP [dm6]	C	A	1.917e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	6872890	3L_6872890_SNP [dm3] 3L_6879790_SNP [dm6]	C	T	1.923e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11427600	2L_11427600_SNP [dm3] 2L_11427600_SNP [dm6]	A	T	1.935e^-4	0.929	INTERGENIC
X	14797734	X_14797734_SNP [dm3] X_14903701_SNP [dm6]	G	A	1.947e^-4	0.929	INTRON Flo2 & 1 other
3L	1710188	3L_1710188_SNP [dm3] 3L_1710188_SNP [dm6]	G	A	1.950e^-4	0.929	INTRON CG7991	TF binding site mE1_TFBS_chinmo
2L	4459472	2L_4459472_SNP [dm3] 2L_4459472_SNP [dm6]	G	T	1.953e^-4	0.929	UPSTREAM CG15435 INTRON mRpL27	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	14579091	2L_14579091_SNP [dm3] 2L_14579091_SNP [dm6]	G	A	1.964e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20240447	X_20240447_SNP [dm3] X_20369420_SNP [dm6]	T	G	1.978e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	11230896	3L_11230896_SNP [dm3] 3L_11237796_SNP [dm6]	A	C	1.978e^-4	0.929	UPSTREAM CR44718 DOWNSTREAM CR44719 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16503927	3L_16503927_SNP [dm3] 3L_16510827_SNP [dm6]	T	A	1.982e^-4	0.929	INTRON CG43373
3L	11634250	3L_11634250_SNP [dm3] 3L_11641150_SNP [dm6]	T	C	1.988e^-4	0.929	SYNONYMOUS_CODING CG32091	TF binding site mE1_TFBS_chinmo
3R	13001009	3R_13001009_SNP [dm3] 3R_17175287_SNP [dm6]	T	G	1.991e^-4	0.929	INTRON Mur89F
X	17039023	X_17039023_SNP [dm3] X_17144990_SNP [dm6]	A	C	1.993e^-4	0.929	UPSTREAM snoRNA:Psi28S-1192d & 4 others DOWNSTREAM snoRNA:Psi18S-1854c & 4 others INTRON RpS5a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12404897	X_12404897_SNP [dm3] X_12510864_SNP [dm6]	G	A	2.003e^-4	0.929	INTRON CG2556
3R	26180982	3R_26180982_SNP [dm3] 3R_30355260_SNP [dm6]	G	T	2.009e^-4	0.929	INTRON hdc
3R	2287353	3R_2287353_DEL [dm3] 3R_6461631_DEL [dm6]	ACTTAATGCCTAACAACAAC...	A	2.015e^-4	0.929	INTERGENIC
3L	17028470	3L_17028470_SNP [dm3] 3L_17035370_SNP [dm6]	G	A	2.017e^-4	0.929	UPSTREAM beg INTERGENIC
2R	11305369	2R_11305369_SNP [dm3] 2R_15417864_SNP [dm6]	C	T	2.019e^-4	0.929	INTRON CG43729
2L	9354864	2L_9354864_SNP [dm3] 2L_9354864_SNP [dm6]	C	T	2.023e^-4	0.929	INTERGENIC
3R	14499107	3R_14499107_SNP [dm3] 3R_18673385_SNP [dm6]	C	T	2.040e^-4	0.929	SYNONYMOUS_CODING CG7702	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17564872	2R_17564872_SNP [dm3] 2R_21677367_SNP [dm6]	C	A	2.049e^-4	0.929	INTRON CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18884460	2L_18884460_SNP [dm3] 2L_18884460_SNP [dm6]	T	A	2.058e^-4	0.929	INTERGENIC
3L	1276046	3L_1276046_SNP [dm3] 3L_1276046_SNP [dm6]	C	G	2.060e^-4	0.929	UTR_5_PRIME CG32333	TF binding site mE1_TFBS_Trl
2L	14590321	2L_14590321_SNP [dm3] 2L_14590321_SNP [dm6]	G	T	2.065e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15662294	3L_15662294_SNP [dm3] 3L_15669194_SNP [dm6]	T	G	2.068e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	12179611	3L_12179611_SNP [dm3] 3L_12186511_SNP [dm6]	T	C	2.074e^-4	0.929	INTRON CG6910	TF binding site mE1_TFBS_cad
3L	12781529	3L_12781529_SNP [dm3] 3L_12788429_SNP [dm6]	T	G	2.087e^-4	0.929	INTRON Atg1	TF binding site mE1_TFBS_Trl
X	19996776	X_19996776_SNP [dm3] X_20102743_SNP [dm6]	C	G	2.089e^-4	0.929	INTERGENIC	transposable element FlyBase
3L	6978874	3L_6978874_SNP [dm3] 3L_6985774_SNP [dm6]	T	G	2.092e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12179583	3L_12179583_SNP [dm3] 3L_12186483_SNP [dm6]	C	A	2.107e^-4	0.929	INTRON CG6910	TF binding site mE1_TFBS_cad
3R	27134851	3R_27134851_SNP [dm3] 3R_31309129_SNP [dm6]	A	C	2.116e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12676953	3L_12676953_SNP [dm3] 3L_12683853_SNP [dm6]	A	G	2.117e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22135781	3R_22135781_SNP [dm3] 3R_26310059_SNP [dm6]	T	C	2.119e^-4	0.929	INTERGENIC
3R	11265025	3R_11265025_SNP [dm3] 3R_15439303_SNP [dm6]	A	G	2.127e^-4	0.929	UPSTREAM Act88F INTERGENIC	regulatory region REDfly_CRMs
2R	15893168	2R_15893168_SNP [dm3] 2R_20005663_SNP [dm6]	T	G	2.137e^-4	0.929	UPSTREAM CG16898 INTERGENIC
3L	22012805	3L_22012805_DEL [dm3] 3L_22019705_DEL [dm6]	CCC	C	2.141e^-4	0.929	INTERGENIC
2R	995096	2R_995096_SNP [dm3] 2R_5107591_SNP [dm6]	A	G	2.150e^-4	0.929	INTERGENIC	transposable element FlyBase
X	11066735	X_11066735_SNP [dm3] X_11172702_SNP [dm6]	T	A	2.162e^-4	0.929	INTERGENIC
2R	19174527	2R_19174527_SNP [dm3] 2R_23287004_SNP [dm6]	A	G	2.194e^-4	0.929	INTERGENIC
3L	15712055	3L_15712055_SNP [dm3] 3L_15718955_SNP [dm6]	A	C	2.213e^-4	0.929	INTRON CG42570
3R	10913525	3R_10913525_SNP [dm3] 3R_15087803_SNP [dm6]	A	T	2.218e^-4	0.929	INTRON CG6966
3L	1416319	3L_1416319_SNP [dm3] 3L_1416319_SNP [dm6]	G	A	2.220e^-4	0.929	UTR_5_PRIME FucTD INTRON Ptp61F	TF binding site mE1_TFBS_chinmo
2R	4477146	2R_4477146_SNP [dm3] 2R_8589641_SNP [dm6]	G	C	2.222e^-4	0.929	UPSTREAM CG14752 INTERGENIC	TF binding site mE1_TFBS_cad
3R	10557012	3R_10557012_SNP [dm3] 3R_14731290_SNP [dm6]	A	G	2.225e^-4	0.929	UTR_5_PRIME CG7530 UPSTREAM CG7530 INTRON CG7530	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	18368599	3L_18368599_SNP [dm3] 3L_18375499_SNP [dm6]	A	T	2.231e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	4274365	2L_4274365_SNP [dm3] 2L_4274365_SNP [dm6]	C	G	2.239e^-4	0.929	INTERGENIC
3R	13001011	3R_13001011_SNP [dm3] 3R_17175289_SNP [dm6]	C	T	2.242e^-4	0.929	INTRON Mur89F
3L	1422919	3L_1422919_SNP [dm3] 3L_1422919_SNP [dm6]	G	A	2.244e^-4	0.929	SYNONYMOUS_CODING CG9173 INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	7398509	2R_7398509_SNP [dm3] 2R_11511004_SNP [dm6]	T	C	2.244e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_prd mE1_TFBS_HSA
X	18692963	X_18692963_SNP [dm3] X_18798930_SNP [dm6]	C	G	2.277e^-4	0.929	INTRON Pk17E	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12012634	X_12012634_SNP [dm3] X_12118601_SNP [dm6]	T	C	2.280e^-4	0.929	INTRON Ten-a
2L	14594311	2L_14594311_SNP [dm3] 2L_14594311_SNP [dm6]	C	A	2.289e^-4	0.929	INTERGENIC
3L	12164182	3L_12164182_SNP [dm3] 3L_12171082_SNP [dm6]	G	C	2.294e^-4	0.929	INTRON Rh7
X	13122361	X_13122361_SNP [dm3] X_13228328_SNP [dm6]	C	A	2.298e^-4	0.929	INTRON mew	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8681263	3L_8681263_SNP [dm3] 3L_8688163_SNP [dm6]	C	T	2.298e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1006777	2R_1006777_SNP [dm3] 2R_5119272_SNP [dm6]	A	T	2.303e^-4	0.929	INTRON gus
3L	2553330	3L_2553330_SNP [dm3] 3L_2553330_SNP [dm6]	T	C	2.309e^-4	0.929	INTRON Spn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3L	5782669	3L_5782669_SNP [dm3] 3L_5789569_SNP [dm6]	G	T	2.314e^-4	0.929	DOWNSTREAM Bre1 INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	15860204	X_15860204_SNP [dm3] X_15966171_SNP [dm6]	G	C	2.325e^-4	0.929	UPSTREAM mir-927 INTRON mmd
X	13378725	X_13378725_SNP [dm3] X_13484692_SNP [dm6]	G	A	2.325e^-4	0.929	INTRON Neto	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	1207770	2L_1207770_SNP [dm3] 2L_1207770_SNP [dm6]	C	A	2.329e^-4	0.929	INTERGENIC
2L	17559276	2L_17559276_SNP [dm3] 2L_17559276_SNP [dm6]	G	A	2.332e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	20761101	X_20761101_SNP [dm3] X_20890074_SNP [dm6]	T	A	2.350e^-4	0.929	INTRON shakB
3R	20911818	3R_20911818_SNP [dm3] 3R_25086096_SNP [dm6]	C	T	2.351e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18368540	3L_18368540_SNP [dm3] 3L_18375440_SNP [dm6]	T	A	2.352e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	15111700	X_15111700_SNP [dm3] X_15217667_SNP [dm6]	T	A	2.366e^-4	0.929	INTERGENIC
3R	20724248	3R_20724248_SNP [dm3] 3R_24898526_SNP [dm6]	G	A	2.371e^-4	0.929	SYNONYMOUS_CODING CG13643 DOWNSTREAM CG11069	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9471694	3L_9471694_SNP [dm3] 3L_9478594_SNP [dm6]	A	G	2.376e^-4	0.929	SYNONYMOUS_CODING Jarid2
3L	21846833	3L_21846833_SNP [dm3] 3L_21853733_SNP [dm6]	A	T	2.382e^-4	0.929	DOWNSTREAM tRNA:CR32449 INTRON mub
2L	14590957	2L_14590957_SNP [dm3] 2L_14590957_SNP [dm6]	T	A	2.387e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2181052	3L_2181052_INS [dm3] 3L_2181052_INS [dm6]	A	AAATA	2.392e^-4	0.929	INTERGENIC
2L	13646440	2L_13646440_SNP [dm3] 2L_13646440_SNP [dm6]	T	A	2.394e^-4	0.929	INTERGENIC
3R	24922046	3R_24922046_SNP [dm3] 3R_29096324_SNP [dm6]	T	C	2.406e^-4	0.929	INTRON CG11873 EXON CR45030
X	3320827	X_3320827_SNP [dm3] X_3426794_SNP [dm6]	A	T	2.407e^-4	0.929	DOWNSTREAM tRNA:CR32493 INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl
X	13207185	X_13207185_SNP [dm3] X_13313152_SNP [dm6]	A	G	2.421e^-4	0.929	INTRON IP3K2
2R	10034643	2R_10034643_SNP [dm3] 2R_14147138_SNP [dm6]	A	T	2.430e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	17061558	X_17061558_SNP [dm3] X_17167525_SNP [dm6]	C	A	2.440e^-4	0.929	INTRON baz	transposable element FlyBase
2L	14982281	2L_14982281_SNP [dm3] 2L_14982281_SNP [dm6]	C	T	2.442e^-4	0.929	INTRON mol
3L	2180910	3L_2180910_SNP [dm3] 3L_2180910_SNP [dm6]	T	A	2.446e^-4	0.929	INTERGENIC
3L	18376146	3L_18376146_SNP [dm3] 3L_18383046_SNP [dm6]	G	T	2.447e^-4	0.929	INTERGENIC
X	3491025	X_3491025_SNP [dm3] X_3596992_SNP [dm6]	A	G	2.454e^-4	0.929	INTRON AstA-R1
2L	9033489	2L_9033489_DEL [dm3] 2L_9033489_DEL [dm6]	AC	A	2.464e^-4	0.929	INTERGENIC
X	6004594	X_6004594_SNP [dm3] X_6110561_SNP [dm6]	G	T	2.469e^-4	0.929	INTRON Ca-alpha1T	TF binding site BDTNP1_TFBS_dl
2L	19801713	2L_19801713_SNP [dm3] 2L_19801713_SNP [dm6]	T	C	2.469e^-4	0.929	INTRON sick
3L	2180717	3L_2180717_SNP [dm3] 3L_2180717_SNP [dm6]	G	A	2.482e^-4	0.929	INTERGENIC
X	17457312	X_17457312_SNP [dm3] X_17563279_SNP [dm6]	A	C	2.484e^-4	0.929	INTERGENIC
3R	23292335	3R_23292335_SNP [dm3] 3R_27466613_SNP [dm6]	C	A	2.486e^-4	0.929	SYNONYMOUS_CODING CG13978	TF binding site mE1_TFBS_inv
3L	7462542	3L_7462542_SNP [dm3] 3L_7469442_SNP [dm6]	C	A	2.493e^-4	0.929	DOWNSTREAM CG8543 & 3 others INTERGENIC
3L	16743490	3L_16743490_INS [dm3] 3L_16750390_INS [dm6]	G	GT	2.500e^-4	0.929	INTERGENIC
2L	9032860	2L_9032860_DEL [dm3] 2L_9032860_DEL [dm6]	AA	A	2.502e^-4	0.929	INTERGENIC
2L	10242398	2L_10242398_DEL [dm3] 2L_10242398_DEL [dm6]	ACAAGAG	A	2.505e^-4	0.929	UPSTREAM CR44995 DOWNSTREAM chico & 1 other INTERGENIC
2L	4459476	2L_4459476_SNP [dm3] 2L_4459476_SNP [dm6]	G	A	2.506e^-4	0.929	UPSTREAM CG15435 INTRON mRpL27	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	9560882	X_9560882_SNP [dm3] X_9666849_SNP [dm6]	T	G	2.508e^-4	0.929	UTR_3_PRIME nej
2R	10814609	2R_10814609_SNP [dm3] 2R_14927104_SNP [dm6]	A	T	2.514e^-4	0.929	INTRON CG10249	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15387634	3L_15387634_SNP [dm3] 3L_15394534_SNP [dm6]	G	A	2.514e^-4	0.929	INTERGENIC
2R	14020579	2R_14020579_SNP [dm3] 2R_18133074_SNP [dm6]	G	A	2.520e^-4	0.929	SYNONYMOUS_CODING Hsf	TF binding site BDTNP1_TFBS_dl
3L	15662022	3L_15662022_SNP [dm3] 3L_15668922_SNP [dm6]	G	C	2.521e^-4	0.929	INTERGENIC
3L	21926342	3L_21926342_SNP [dm3] 3L_21933242_SNP [dm6]	C	T	2.521e^-4	0.929	DOWNSTREAM mub INTERGENIC
X	13821955	X_13821955_SNP [dm3] X_13927922_SNP [dm6]	C	T	2.525e^-4	0.929	INTRON mamo
3R	26235369	3R_26235369_SNP [dm3] 3R_30409647_SNP [dm6]	A	T	2.527e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5026929	3L_5026929_SNP [dm3] 3L_5026929_SNP [dm6]	G	A	2.531e^-4	0.929	INTRON Con
3R	5117384	3R_5117384_SNP [dm3] 3R_9291662_SNP [dm6]	C	A	2.532e^-4	0.929	INTERGENIC
3R	9095366	3R_9095366_SNP [dm3] 3R_13269644_SNP [dm6]	G	A	2.536e^-4	0.929	SYNONYMOUS_CODING CG8449 UTR_3_PRIME Su_var_3-7 DOWNSTREAM Su_var_3-7
2L	14652655	2L_14652655_SNP [dm3] 2L_14652655_SNP [dm6]	G	A	2.540e^-4	0.929	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15661698	3L_15661698_SNP [dm3] 3L_15668598_SNP [dm6]	T	A	2.553e^-4	0.929	INTERGENIC
X	7316111	X_7316111_SNP [dm3] X_7422078_SNP [dm6]	C	T	2.554e^-4	0.929	UTR_3_PRIME CG9657 DOWNSTREAM CG9657
3R	16977044	3R_16977044_SNP [dm3] 3R_21151322_SNP [dm6]	T	C	2.554e^-4	0.929	INTRON SNF4Agamma
2L	9884195	2L_9884195_SNP [dm3] 2L_9884195_SNP [dm6]	C	T	2.558e^-4	0.929	INTRON nAChRalpha6
2R	19377232	2R_19377232_SNP [dm3] 2R_23489709_SNP [dm6]	C	A	2.567e^-4	0.929	INTRON CG43795
X	2831529	X_2831529_SNP [dm3] X_2937496_SNP [dm6]	C	G	2.569e^-4	0.929	NON_SYNONYMOUS_CODING CG3598 INTRON kirre	TF binding site mE1_TFBS_chinmo
2R	16724972	2R_16724972_SNP [dm3] 2R_20837467_SNP [dm6]	A	C	2.570e^-4	0.929	UPSTREAM CR44667 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	13371260	3L_13371260_SNP [dm3] 3L_13378160_SNP [dm6]	G	A	2.574e^-4	0.929	UPSTREAM SNCF INTRON CG14111	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1276109	3L_1276109_SNP [dm3] 3L_1276109_SNP [dm6]	T	C	2.576e^-4	0.929	UTR_5_PRIME CG32333	TF binding site mE1_TFBS_Trl
X	19178986	X_19178986_SNP [dm3] X_19284953_SNP [dm6]	G	T	2.579e^-4	0.929	UPSTREAM CG8034 INTRON CG8034
X	10614728	X_10614728_SNP [dm3] X_10720695_SNP [dm6]	C	A	2.580e^-4	0.929	INTRON CG32676
2L	7916476	2L_7916476_SNP [dm3] 2L_7916476_SNP [dm6]	A	T	2.588e^-4	0.929	INTRON Snoo
X	10913365	X_10913365_SNP [dm3] X_11019332_SNP [dm6]	G	C	2.590e^-4	0.929	INTRON CG42339
3R	23304261	3R_23304261_SNP [dm3] 3R_27478539_SNP [dm6]	T	G	2.592e^-4	0.929	UPSTREAM Cyp6a18 INTERGENIC
3L	11479202	3L_11479202_SNP [dm3] 3L_11486102_SNP [dm6]	T	G	2.604e^-4	0.929	INTERGENIC
X	2479008	X_2479008_SNP [dm3] X_2584975_SNP [dm6]	A	C	2.608e^-4	0.929	INTRON CG13760	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	14595117	2L_14595117_SNP [dm3] 2L_14595117_SNP [dm6]	T	C	2.616e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11737189	2R_11737189_SNP [dm3] 2R_15849684_SNP [dm6]	T	G	2.619e^-4	0.929	SPLICE_SITE_REGION tun INTRON tun
3L	2078460	3L_2078460_SNP [dm3] 3L_2078460_SNP [dm6]	G	T	2.623e^-4	0.929	INTRON sls
2L	19998017	2L_19998017_SNP [dm3] 2L_19998017_SNP [dm6]	A	G	2.632e^-4	0.929	INTRON CG43861
2R	12696472	2R_12696472_SNP [dm3] 2R_16808967_SNP [dm6]	T	A	2.633e^-4	0.929	INTERGENIC
2R	10877054	2R_10877054_SNP [dm3] 2R_14989549_SNP [dm6]	T	G	2.634e^-4	0.929	SPLICE_SITE_REGION pcs INTRON pcs & 1 other
2L	5338671	2L_5338671_SNP [dm3] 2L_5338671_SNP [dm6]	G	A	2.646e^-4	0.929	UPSTREAM fusl DOWNSTREAM CG12512 INTERGENIC
2R	19128212	2R_19128212_SNP [dm3] 2R_23240689_SNP [dm6]	G	A	2.649e^-4	0.929	INTERGENIC
3L	3684950	3L_3684950_SNP [dm3] 3L_3684950_SNP [dm6]	G	T	2.650e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15160870	2L_15160870_SNP [dm3] 2L_15160870_SNP [dm6]	C	T	2.650e^-4	0.929	UPSTREAM CR44771 EXON CR44770
2R	10877048	2R_10877048_DEL [dm3] 2R_14989543_DEL [dm6]	TCTTC	T	2.652e^-4	0.929	SPLICE_SITE_REGION pcs INTRON pcs & 1 other
2R	14020464	2R_14020464_SNP [dm3] 2R_18132959_SNP [dm6]	T	A	2.660e^-4	0.929	INTRON Hsf	TF binding site BDTNP1_TFBS_dl
2L	14415728	2L_14415728_SNP [dm3] 2L_14415728_SNP [dm6]	A	C	2.662e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	19229676	2L_19229676_SNP [dm3] 2L_19229676_SNP [dm6]	C	A	2.670e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Kr
X	16596944	X_16596944_SNP [dm3] X_16702911_SNP [dm6]	G	T	2.681e^-4	0.929	UTR_3_PRIME CG9673 UPSTREAM spheroide INTRON CG4678
3R	13045110	3R_13045110_SNP [dm3] 3R_17219388_SNP [dm6]	C	A	2.681e^-4	0.929	SYNONYMOUS_CODING CG31262
3R	13347864	3R_13347864_SNP [dm3] 3R_17522142_SNP [dm6]	A	T	2.682e^-4	0.929	INTERGENIC
2L	1445097	2L_1445097_SNP [dm3] 2L_1445097_SNP [dm6]	T	C	2.685e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	11466815	3R_11466815_SNP [dm3] 3R_15641093_SNP [dm6]	G	C	2.698e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	10111874	2L_10111874_SNP [dm3] 2L_10111874_SNP [dm6]	G	T	2.709e^-4	0.929	INTRON CG44153 & 1 other
2L	5547808	2L_5547808_SNP [dm3] 2L_5547808_SNP [dm6]	C	G	2.713e^-4	0.929	SPLICE_SITE_REGION Oscillin UTR_5_PRIME Oscillin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	13378891	X_13378891_SNP [dm3] X_13484858_SNP [dm6]	G	C	2.716e^-4	0.929	INTRON Neto	TF binding site mE1_TFBS_sbb
3R	11093788	3R_11093788_SNP [dm3] 3R_15268066_SNP [dm6]	T	C	2.720e^-4	0.929	NON_SYNONYMOUS_CODING CG14864 UPSTREAM Zip88E	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	18932738	X_18932738_SNP [dm3] X_19038705_SNP [dm6]	A	C	2.723e^-4	0.929	INTERGENIC
2L	21347369	2L_21347369_INS [dm3] 2L_21347369_INS [dm6]	T	TTTCGATT	2.723e^-4	0.929	INTRON Tsp39D
X	6006729	X_6006729_SNP [dm3] X_6112696_SNP [dm6]	T	C	2.734e^-4	0.929	SYNONYMOUS_CODING Ca-alpha1T	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13848825	3L_13848825_SNP [dm3] 3L_13855725_SNP [dm6]	T	A	2.749e^-4	0.929	INTRON Hml
3R	25074433	3R_25074433_DEL [dm3] 3R_29248711_DEL [dm6]	CTGA	C	2.751e^-4	0.929	UTR_5_PRIME SP1029 INTRON SP1029
3L	12068536	3L_12068536_SNP [dm3] 3L_12075436_SNP [dm6]	T	C	2.751e^-4	0.929	INTRON Sema-5c
3L	13288693	3L_13288693_SNP [dm3] 3L_13295593_SNP [dm6]	T	C	2.752e^-4	0.929	DOWNSTREAM Sfp70A4 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20557214	2L_20557214_SNP [dm3] 2L_20557214_SNP [dm6]	G	A	2.759e^-4	0.929	INTERGENIC
3L	12620324	3L_12620324_SNP [dm3] 3L_12627224_SNP [dm6]	C	T	2.759e^-4	0.929	UPSTREAM CR32111 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	5718374	3R_5718374_INS [dm3] 3R_9892652_INS [dm6]	T	TT	2.761e^-4	0.929	INTRON Glut4EF
X	16609445	X_16609445_DEL [dm3] X_16715412_DEL [dm6]	ATCCATACA	A	2.772e^-4	0.929	INTRON CG34325
2L	18894528	2L_18894528_SNP [dm3] 2L_18894528_SNP [dm6]	A	T	2.780e^-4	0.929	EXON CR44737	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
2L	2044648	2L_2044648_SNP [dm3] 2L_2044648_SNP [dm6]	C	T	2.781e^-4	0.929	UPSTREAM Kebab DOWNSTREAM Su_dx_ EXON CR45298	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	10928904	2L_10928904_SNP [dm3] 2L_10928904_SNP [dm6]	C	T	2.792e^-4	0.929	INTRON dpr2
X	5405601	X_5405601_SNP [dm3] X_5511568_SNP [dm6]	T	C	2.796e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA
2L	11428386	2L_11428386_SNP [dm3] 2L_11428386_SNP [dm6]	T	C	2.806e^-4	0.929	INTERGENIC
2L	12101353	2L_12101353_SNP [dm3] 2L_12101353_SNP [dm6]	A	G	2.807e^-4	0.929	SYNONYMOUS_CODING Patsas DOWNSTREAM Ced-12
2R	3763150	2R_3763150_SNP [dm3] 2R_7875645_SNP [dm6]	T	C	2.811e^-4	0.929	INTRON Dgk
3L	13761327	3L_13761327_DEL [dm3] 3L_13768227_DEL [dm6]	GGGACAGGACACTGTGCTCT...	G	2.811e^-4	0.929	INTRON bru-3
3L	2591611	3L_2591611_SNP [dm3] 3L_2591611_SNP [dm6]	G	A	2.813e^-4	0.929	SPLICE_SITE_REGION dos UTR_5_PRIME dos INTRON dos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8312126	2L_8312126_SNP [dm3] 2L_8312126_SNP [dm6]	T	A	2.813e^-4	0.929	UPSTREAM CG7810 INTRON CG7806	TF binding site mE1_TFBS_HSA
2L	8312132	2L_8312132_SNP [dm3] 2L_8312132_SNP [dm6]	G	C	2.813e^-4	0.929	UPSTREAM CG7810 INTRON CG7806	TF binding site mE1_TFBS_HSA
3L	15662435	3L_15662435_SNP [dm3] 3L_15669335_SNP [dm6]	A	T	2.818e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	19613287	2R_19613287_SNP [dm3] 2R_23725764_SNP [dm6]	A	G	2.827e^-4	0.929	INTRON Sesn
2L	11447080	2L_11447080_SNP [dm3] 2L_11447080_SNP [dm6]	A	G	2.832e^-4	0.929	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	16609892	X_16609892_SNP [dm3] X_16715859_SNP [dm6]	A	G	2.847e^-4	0.929	INTRON CG34325
2L	10586991	2L_10586991_SNP [dm3] 2L_10586991_SNP [dm6]	A	G	2.849e^-4	0.929	INTRON Trim9	TF binding site mE1_TFBS_chinmo
2L	16465046	2L_16465046_SNP [dm3] 2L_16465046_SNP [dm6]	G	A	2.851e^-4	0.929	INTERGENIC	regulatory region REDfly_CRMs
2L	20854350	2L_20854350_SNP [dm3] 2L_20854350_SNP [dm6]	T	C	2.866e^-4	0.929	INTRON twit
3R	13389785	3R_13389785_SNP [dm3] 3R_17564063_SNP [dm6]	C	T	2.867e^-4	0.929	INTRON Hmx
3R	10417663	3R_10417663_SNP [dm3] 3R_14591941_SNP [dm6]	G	C	2.871e^-4	0.929	UTR_5_PRIME stumps INTRON stumps	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	15661686	3L_15661686_SNP [dm3] 3L_15668586_SNP [dm6]	T	G	2.874e^-4	0.929	INTERGENIC
2L	14605729	2L_14605729_SNP [dm3] 2L_14605729_SNP [dm6]	A	G	2.889e^-4	0.929	INTRON osp
2L	9018478	2L_9018478_SNP [dm3] 2L_9018478_SNP [dm6]	T	C	2.894e^-4	0.929	INTERGENIC
2R	14469945	2R_14469945_SNP [dm3] 2R_18582440_SNP [dm6]	T	C	2.895e^-4	0.929	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	1417945	3L_1417945_SNP [dm3] 3L_1417945_SNP [dm6]	C	T	2.897e^-4	0.929	DOWNSTREAM FucTD INTRON Ptp61F	TF binding site mE1_TFBS_chinmo
3R	14153324	3R_14153324_SNP [dm3] 3R_18327602_SNP [dm6]	T	A	2.906e^-4	0.929	INTRON CG31235
2L	1884631	2L_1884631_INS [dm3] 2L_1884631_INS [dm6]	T	TGAAGAT	2.908e^-4	0.929	UTR_5_PRIME CG7337 UPSTREAM CG15358	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	14591301	2L_14591301_SNP [dm3] 2L_14591301_SNP [dm6]	T	A	2.924e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3L	5206119	3L_5206119_SNP [dm3] 3L_5213019_SNP [dm6]	T	C	2.927e^-4	0.929	INTRON shep	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	21603814	3L_21603814_DEL [dm3] 3L_21610714_DEL [dm6]	GAG	G	2.930e^-4	0.929	INTRON TfAP-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17189135	2L_17189135_SNP [dm3] 2L_17189135_SNP [dm6]	T	G	2.931e^-4	0.929	UTR_3_PRIME beat-IIIc DOWNSTREAM beat-IIIc
2L	10242390	2L_10242390_SNP [dm3] 2L_10242390_SNP [dm6]	A	G	2.940e^-4	0.929	UPSTREAM CR44995 DOWNSTREAM chico & 1 other INTERGENIC
2L	14998061	2L_14998061_SNP [dm3] 2L_14998061_SNP [dm6]	G	T	2.946e^-4	0.929	UPSTREAM mol INTERGENIC
3L	2472062	3L_2472062_SNP [dm3] 3L_2472062_SNP [dm6]	G	T	2.951e^-4	0.929	INTRON CG45186
2L	11421154	2L_11421154_SNP [dm3] 2L_11421154_SNP [dm6]	G	C	2.954e^-4	0.929	INTERGENIC
3L	2954139	3L_2954139_SNP [dm3] 3L_2954139_SNP [dm6]	G	T	2.963e^-4	0.929	DOWNSTREAM Shab INTRON Shab
2R	17140024	2R_17140024_SNP [dm3] 2R_21252519_SNP [dm6]	G	T	2.965e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	16483763	2R_16483763_INS [dm3] 2R_20596258_INS [dm6]	T	TCTCTCACT	2.967e^-4	0.929	INTRON bl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	19239472	2L_19239472_SNP [dm3] 2L_19239472_SNP [dm6]	C	T	2.970e^-4	0.929	INTERGENIC
3L	7574940	3L_7574940_SNP [dm3] 3L_7581840_SNP [dm6]	C	T	2.971e^-4	0.929	INTERGENIC
2R	12598936	2R_12598936_SNP [dm3] 2R_16711431_SNP [dm6]	T	C	2.974e^-4	0.929	INTRON CG30463
X	16609889	X_16609889_SNP [dm3] X_16715856_SNP [dm6]	C	T	2.976e^-4	0.929	INTRON CG34325
3L	11633923	3L_11633923_SNP [dm3] 3L_11640823_SNP [dm6]	T	C	2.977e^-4	0.929	SYNONYMOUS_CODING CG32091
3R	13045107	3R_13045107_SNP [dm3] 3R_17219385_SNP [dm6]	G	T	2.993e^-4	0.929	SYNONYMOUS_CODING CG31262
2R	14020493	2R_14020493_SNP [dm3] 2R_18132988_SNP [dm6]	T	C	3.001e^-4	0.929	INTRON Hsf	TF binding site BDTNP1_TFBS_dl
3R	13045213	3R_13045213_SNP [dm3] 3R_17219491_SNP [dm6]	A	T	3.019e^-4	0.929	INTRON CG31262
2L	14652616	2L_14652616_SNP [dm3] 2L_14652616_SNP [dm6]	T	A	3.020e^-4	0.929	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13928731	3L_13928731_SNP [dm3] 3L_13935631_SNP [dm6]	A	G	3.024e^-4	0.929	DOWNSTREAM Gl INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	16767928	3R_16767928_SNP [dm3] 3R_20942206_SNP [dm6]	C	T	3.047e^-4	0.929	INTRON CG31191
3L	1727905	3L_1727905_SNP [dm3] 3L_1727905_SNP [dm6]	G	C	3.052e^-4	0.929	INTRON drpr	TF binding site BDTNP1_TFBS_twi
3R	11297056	3R_11297056_SNP [dm3] 3R_15471334_SNP [dm6]	C	T	3.053e^-4	0.929	INTRON AdamTS-A
3L	1276138	3L_1276138_SNP [dm3] 3L_1276138_SNP [dm6]	G	A	3.064e^-4	0.929	UTR_5_PRIME CG32333	TF binding site mE1_TFBS_Trl
2L	11007941	2L_11007941_SNP [dm3] 2L_11007941_SNP [dm6]	G	A	3.067e^-4	0.929	SYNONYMOUS_CODING Nup154	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5830189	X_5830189_SNP [dm3] X_5936156_SNP [dm6]	A	T	3.073e^-4	0.929	INTRON CG3726
3L	21980293	3L_21980293_DEL [dm3] 3L_21987193_DEL [dm6]	TCGAACCCAAGT...	T	3.077e^-4	0.929	DOWNSTREAM Act79B INTERGENIC
2L	13646447	2L_13646447_SNP [dm3] 2L_13646447_SNP [dm6]	T	A	3.086e^-4	0.929	INTERGENIC
X	2479121	X_2479121_SNP [dm3] X_2585088_SNP [dm6]	A	G	3.090e^-4	0.929	SYNONYMOUS_CODING CG13760 UPSTREAM wds	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	1006694	2R_1006694_SNP [dm3] 2R_5119189_SNP [dm6]	A	C	3.100e^-4	0.929	INTRON gus
X	19996751	X_19996751_SNP [dm3] X_20102718_SNP [dm6]	A	G	3.100e^-4	0.929	INTERGENIC	transposable element FlyBase
X	12319611	X_12319611_SNP [dm3] X_12425578_SNP [dm6]	T	G	3.102e^-4	0.929	INTERGENIC
X	19178939	X_19178939_SNP [dm3] X_19284906_SNP [dm6]	A	T	3.106e^-4	0.929	UPSTREAM CG8034 INTRON CG8034
2R	14020495	2R_14020495_SNP [dm3] 2R_18132990_SNP [dm6]	T	C	3.112e^-4	0.929	INTRON Hsf	TF binding site BDTNP1_TFBS_dl
3L	14764381	3L_14764381_SNP [dm3] 3L_14771281_SNP [dm6]	A	G	3.113e^-4	0.929	SYNONYMOUS_CODING mop	TF binding site mE1_TFBS_cad
3R	14153362	3R_14153362_SNP [dm3] 3R_18327640_SNP [dm6]	A	C	3.117e^-4	0.929	INTRON CG31235
2L	14475336	2L_14475336_SNP [dm3] 2L_14475336_SNP [dm6]	A	G	3.118e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	25054968	3R_25054968_SNP [dm3] 3R_29229246_SNP [dm6]	A	C	3.125e^-4	0.929	UTR_5_PRIME CG15817	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	20764335	2L_20764335_SNP [dm3] 2L_20764335_SNP [dm6]	C	T	3.131e^-4	0.929	SYNONYMOUS_CODING dia	TF binding site mE1_TFBS_sens
2R	12351531	2R_12351531_SNP [dm3] 2R_16464026_SNP [dm6]	G	A	3.132e^-4	0.929	INTERGENIC
3L	5218189	3L_5218189_DEL [dm3] 3L_5225089_DEL [dm6]	AATTTGAATCAAA...	A	3.132e^-4	0.929	INTRON shep
2L	17434753	2L_17434753_SNP [dm3] 2L_17434753_SNP [dm6]	C	A	3.134e^-4	0.929	INTRON CG5043
X	16609903	X_16609903_SNP [dm3] X_16715870_SNP [dm6]	C	T	3.135e^-4	0.929	INTRON CG34325
3L	16163071	3L_16163071_SNP [dm3] 3L_16169971_SNP [dm6]	C	T	3.144e^-4	0.929	SYNONYMOUS_CODING CG33796 DOWNSTREAM CG33795
3L	3430287	3L_3430287_SNP [dm3] 3L_3430287_SNP [dm6]	C	T	3.147e^-4	0.929	INTRON eIF5B
3R	14370596	3R_14370596_SNP [dm3] 3R_18544874_SNP [dm6]	C	A	3.152e^-4	0.929	INTRON fru
3R	11041157	3R_11041157_SNP [dm3] 3R_15215435_SNP [dm6]	A	G	3.153e^-4	0.929	SYNONYMOUS_CODING SIDL DOWNSTREAM CG4210	TF binding site mE1_TFBS_cad
3R	22824670	3R_22824670_SNP [dm3] 3R_26998948_SNP [dm6]	C	T	3.159e^-4	0.929	UPSTREAM CG31077 INTRON RYa-R
X	18393061	X_18393061_SNP [dm3] X_18499028_SNP [dm6]	C	G	3.160e^-4	0.929	INTRON GalNAc-T2	TF binding site BDTNP1_TFBS_dl
2L	15024930	2L_15024930_SNP [dm3] 2L_15024930_SNP [dm6]	C	T	3.171e^-4	0.929	INTRON GABA-B-R1
2R	1010644	2R_1010644_SNP [dm3] 2R_5123139_SNP [dm6]	G	A	3.174e^-4	0.929	UPSTREAM gus INTRON gus	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_zfh1
3R	4520400	3R_4520400_SNP [dm3] 3R_8694678_SNP [dm6]	T	C	3.176e^-4	0.929	UPSTREAM hb INTRON hb	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	17279747	2L_17279747_SNP [dm3] 2L_17279747_SNP [dm6]	C	T	3.179e^-4	0.929	UPSTREAM CR45729 INTERGENIC
2R	14020597	2R_14020597_SNP [dm3] 2R_18133092_SNP [dm6]	T	A	3.189e^-4	0.929	SYNONYMOUS_CODING Hsf	TF binding site BDTNP1_TFBS_dl
X	15111825	X_15111825_SNP [dm3] X_15217792_SNP [dm6]	A	T	3.189e^-4	0.929	INTERGENIC
2L	20609745	2L_20609745_SNP [dm3] 2L_20609745_SNP [dm6]	T	C	3.195e^-4	0.929	INTRON CR44909
2L	14410157	2L_14410157_SNP [dm3] 2L_14410157_SNP [dm6]	G	C	3.207e^-4	0.929	UPSTREAM elB DOWNSTREAM CR44733 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
2R	19174502	2R_19174502_SNP [dm3] 2R_23286979_SNP [dm6]	G	C	3.214e^-4	0.929	INTERGENIC
3R	22487942	3R_22487942_SNP [dm3] 3R_26662220_SNP [dm6]	C	T	3.216e^-4	0.929	SYNONYMOUS_CODING beat-VII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24495250	3R_24495250_SNP [dm3] 3R_28669528_SNP [dm6]	G	A	3.216e^-4	0.929	NON_SYNONYMOUS_CODING CG33346
3L	22024365	3L_22024365_SNP [dm3] 3L_22031265_SNP [dm6]	T	C	3.219e^-4	0.929	DOWNSTREAM CR44687 INTERGENIC
3L	5717539	3L_5717539_SNP [dm3] 3L_5724439_SNP [dm6]	G	T	3.225e^-4	0.929	INTRON sif
3L	6805585	3L_6805585_SNP [dm3] 3L_6812485_SNP [dm6]	T	A	3.225e^-4	0.929	INTERGENIC
3L	16723655	3L_16723655_SNP [dm3] 3L_16730555_SNP [dm6]	C	T	3.227e^-4	0.929	SYNONYMOUS_CODING Dbp73D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	869889	2R_869889_SNP [dm3] 2R_4982384_SNP [dm6]	G	A	3.231e^-4	0.929	INTRON Ir41a	TF binding site mE1_TFBS_cad transposable element FlyBase
X	9560807	X_9560807_INS [dm3] X_9666774_INS [dm6]	T	TT	3.232e^-4	0.929	UTR_3_PRIME nej
2R	9631897	2R_9631897_SNP [dm3] 2R_13744392_SNP [dm6]	C	T	3.234e^-4	0.929	INTRON fas
2R	13800951	2R_13800951_SNP [dm3] 2R_17913446_SNP [dm6]	G	A	3.237e^-4	0.929	INTRON Elk
3L	4984828	3L_4984828_SNP [dm3] 3L_4984828_SNP [dm6]	A	T	3.237e^-4	0.929	INTRON Con
3L	1296539	3L_1296539_SNP [dm3] 3L_1296539_SNP [dm6]	T	C	3.241e^-4	0.929	SYNONYMOUS_CODING Rabex-5 DOWNSTREAM CG32333	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15018736	3R_15018736_SNP [dm3] 3R_19193014_SNP [dm6]	T	A	3.241e^-4	0.929	INTRON CG31475
2L	13894650	2L_13894650_SNP [dm3] 2L_13894650_SNP [dm6]	C	T	3.245e^-4	0.929	INTRON CenG1A	TF binding site mE1_TFBS_cad
X	10895319	X_10895319_INS [dm3] X_11001286_INS [dm6]	A	AA	3.274e^-4	0.929	INTRON CG42339
X	5599352	X_5599352_SNP [dm3] X_5705319_SNP [dm6]	C	A	3.280e^-4	0.929	INTRON CG4096	TF binding site mE1_TFBS_HSA mE1_TFBS_run
3R	14803947	3R_14803947_SNP [dm3] 3R_18978225_SNP [dm6]	C	T	3.287e^-4	0.929	DOWNSTREAM CG12269 & 2 others INTERGENIC
X	5606903	X_5606903_SNP [dm3] X_5712870_SNP [dm6]	A	G	3.291e^-4	0.929	INTRON CG33080
X	17562466	X_17562466_SNP [dm3] X_17668433_SNP [dm6]	T	C	3.296e^-4	0.929	DOWNSTREAM CG12990 INTRON beta-Spec
3L	3684951	3L_3684951_SNP [dm3] 3L_3684951_SNP [dm6]	C	T	3.301e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16609443	X_16609443_SNP [dm3] X_16715410_SNP [dm6]	C	A	3.303e^-4	0.929	INTRON CG34325
2R	10294709	2R_10294709_SNP [dm3] 2R_14407204_SNP [dm6]	A	G	3.307e^-4	0.929	INTERGENIC
3L	1462304	3L_1462304_SNP [dm3] 3L_1462304_SNP [dm6]	G	A	3.307e^-4	0.929	INTRON Ptp61F & 1 other	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15033787	2R_15033787_SNP [dm3] 2R_19146282_SNP [dm6]	C	T	3.320e^-4	0.929	DOWNSTREAM CR43399 INTRON ena	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	15059878	2L_15059878_SNP [dm3] 2L_15059878_SNP [dm6]	C	T	3.321e^-4	0.929	SYNONYMOUS_CODING TfIIS DOWNSTREAM CG33679	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19862007	2L_19862007_SNP [dm3] 2L_19862007_SNP [dm6]	G	C	3.323e^-4	0.929	INTRON sick
2R	2583495	2R_2583495_SNP [dm3] 2R_6695990_SNP [dm6]	C	G	3.325e^-4	0.929	SYNONYMOUS_CODING Mob4 UPSTREAM Rab2 DOWNSTREAM CG3270	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	1022401	2R_1022401_SNP [dm3] 2R_5134896_SNP [dm6]	G	A	3.327e^-4	0.929	INTERGENIC	transposable element FlyBase
3L	12179506	3L_12179506_SNP [dm3] 3L_12186406_SNP [dm6]	G	A	3.328e^-4	0.929	INTRON CG6910
2L	8320389	2L_8320389_SNP [dm3] 2L_8320389_SNP [dm6]	T	C	3.336e^-4	0.929	UTR_5_PRIME CG7787 UPSTREAM mtsh DOWNSTREAM CG7781	TF binding site mE1_TFBS_h mE1_TFBS_HSA
2L	19823595	2L_19823595_SNP [dm3] 2L_19823595_SNP [dm6]	G	C	3.344e^-4	0.929	INTRON sick	TF binding site mE1_TFBS_inv
3L	13758605	3L_13758605_SNP [dm3] 3L_13765505_SNP [dm6]	A	G	3.356e^-4	0.929	INTRON bru-3
X	17458147	X_17458147_SNP [dm3] X_17564114_SNP [dm6]	G	A	3.363e^-4	0.929	INTERGENIC
2L	15024951	2L_15024951_SNP [dm3] 2L_15024951_SNP [dm6]	A	G	3.369e^-4	0.929	INTRON GABA-B-R1
3R	14803971	3R_14803971_SNP [dm3] 3R_18978249_SNP [dm6]	C	T	3.375e^-4	0.929	DOWNSTREAM CG12269 & 2 others INTERGENIC
3L	3684231	3L_3684231_SNP [dm3] 3L_3684231_SNP [dm6]	C	A	3.377e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	21823392	2L_21823392_SNP [dm3] 2L_21823392_SNP [dm6]	C	T	3.382e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_cad
X	13234044	X_13234044_SNP [dm3] X_13340011_SNP [dm6]	G	A	3.386e^-4	0.929	UTR_3_PRIME CG15747
2L	13680409	2L_13680409_SNP [dm3] 2L_13680409_SNP [dm6]	A	C	3.388e^-4	0.929	INTRON CG31814	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17295831	2R_17295831_SNP [dm3] 2R_21408326_SNP [dm6]	A	T	3.389e^-4	0.929	INTRON Sdc
2L	5547809	2L_5547809_SNP [dm3] 2L_5547809_SNP [dm6]	T	C	3.398e^-4	0.929	SPLICE_SITE_REGION Oscillin UTR_5_PRIME Oscillin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	9686527	2R_9686527_SNP [dm3] 2R_13799022_SNP [dm6]	A	G	3.399e^-4	0.929	INTRON Cpr50Cb
X	8619938	X_8619938_SNP [dm3] X_8725905_SNP [dm6]	C	T	3.404e^-4	0.929	DOWNSTREAM CR43297 INTERGENIC
3L	21760186	3L_21760186_SNP [dm3] 3L_21767086_SNP [dm6]	A	G	3.405e^-4	0.929	UPSTREAM CG42689 INTRON Syn1
X	19121028	X_19121028_SNP [dm3] X_19226995_SNP [dm6]	C	A	3.408e^-4	0.929	INTRON CG7884	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12886663	3L_12886663_SNP [dm3] 3L_12893563_SNP [dm6]	C	T	3.411e^-4	0.929	SYNONYMOUS_CODING CG14118	TF binding site mE1_TFBS_chinmo
3L	16229894	3L_16229894_SNP [dm3] 3L_16236794_SNP [dm6]	A	G	3.415e^-4	0.929	UTR_3_PRIME l_3_72Dp UPSTREAM l_3_72Dr
2L	14454941	2L_14454941_SNP [dm3] 2L_14454941_SNP [dm6]	G	T	3.417e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3R	22554323	3R_22554323_SNP [dm3] 3R_26728601_SNP [dm6]	T	C	3.418e^-4	0.929	UPSTREAM CG14245 INTRON CG14246	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7341897	3L_7341897_SNP [dm3] 3L_7348797_SNP [dm6]	C	T	3.418e^-4	0.929	UPSTREAM Srp19 INTRON qm	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	11982807	X_11982807_SNP [dm3] X_12088774_SNP [dm6]	C	A	3.419e^-4	0.929	INTRON CR43960 & 1 other
3R	11265094	3R_11265094_SNP [dm3] 3R_15439372_SNP [dm6]	T	A	3.419e^-4	0.929	UPSTREAM Act88F INTERGENIC	regulatory region REDfly_CRMs
3R	18902040	3R_18902040_SNP [dm3] 3R_23076318_SNP [dm6]	G	C	3.421e^-4	0.929	INTRON CG13830
2L	5582478	2L_5582478_SNP [dm3] 2L_5582478_SNP [dm6]	T	G	3.424e^-4	0.929	INTERGENIC
2L	14454945	2L_14454945_DEL [dm3] 2L_14454945_DEL [dm6]	AA	A	3.427e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2R	11025391	2R_11025391_SNP [dm3] 2R_15137886_SNP [dm6]	C	G	3.427e^-4	0.929	INTRON chn
2R	13179202	2R_13179202_SNP [dm3] 2R_17291697_SNP [dm6]	C	T	3.429e^-4	0.929	INTRON mbl
X	3897800	X_3897800_SNP [dm3] X_4003767_SNP [dm6]	G	A	3.429e^-4	0.929	INTERGENIC
3R	6500792	3R_6500792_SNP [dm3] 3R_10675070_SNP [dm6]	G	T	3.430e^-4	0.929	DOWNSTREAM CG6465 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
3R	19064326	3R_19064326_SNP [dm3] 3R_23238604_SNP [dm6]	G	C	3.443e^-4	0.929	INTRON CG4467	TF binding site mE1_TFBS_Trl
3R	9914271	3R_9914271_SNP [dm3] 3R_14088549_SNP [dm6]	C	A	3.456e^-4	0.929	UPSTREAM Npc2b DOWNSTREAM foxo INTERGENIC	TF binding site mE1_TFBS_bab1
X	12378555	X_12378555_SNP [dm3] X_12484522_SNP [dm6]	G	A	3.461e^-4	0.929	INTERGENIC
3R	27134850	3R_27134850_SNP [dm3] 3R_31309128_SNP [dm6]	C	A	3.468e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14679041	3R_14679041_SNP [dm3] 3R_18853319_SNP [dm6]	A	T	3.468e^-4	0.929	INTERGENIC
3L	21807061	3L_21807061_SNP [dm3] 3L_21813961_SNP [dm6]	C	G	3.470e^-4	0.929	UPSTREAM CG43895 INTRON eg	transposable element FlyBase
3L	11633538	3L_11633538_SNP [dm3] 3L_11640438_SNP [dm6]	A	T	3.474e^-4	0.929	INTRON CG32091
2R	10034463	2R_10034463_INS [dm3] 2R_14146958_INS [dm6]	G	TA	3.477e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	22016996	3L_22016996_DEL [dm3] 3L_22023896_DEL [dm6]	TTTTCTAATCCCACT...	T	3.479e^-4	0.929	INTERGENIC
2R	17139078	2R_17139078_SNP [dm3] 2R_21251573_SNP [dm6]	T	C	3.482e^-4	0.929	UPSTREAM ASPP INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	6715065	2L_6715065_SNP [dm3] 2L_6715065_SNP [dm6]	A	G	3.487e^-4	0.929	UTR_5_PRIME AkhR INTRON AkhR
3L	17941167	3L_17941167_SNP [dm3] 3L_17948067_SNP [dm6]	A	G	3.491e^-4	0.929	UPSTREAM CR45393 INTERGENIC
3L	15385302	3L_15385302_SNP [dm3] 3L_15392202_SNP [dm6]	A	T	3.500e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15154162	X_15154162_SNP [dm3] X_15260129_SNP [dm6]	T	A	3.514e^-4	0.929	INTERGENIC
2L	11917845	2L_11917845_SNP [dm3] 2L_11917845_SNP [dm6]	G	A	3.517e^-4	0.929	INTRON Pde1c
2R	2509253	2R_2509253_SNP [dm3] 2R_6621748_SNP [dm6]	C	T	3.525e^-4	0.929	UTR_3_PRIME jing	TF binding site mE1_TFBS_HSA
3R	3723276	3R_3723276_SNP [dm3] 3R_7897554_SNP [dm6]	T	C	3.530e^-4	0.929	INTRON mRpS9 & 1 other
X	13234234	X_13234234_DEL [dm3] X_13340201_DEL [dm6]	TTG	CA	3.532e^-4	0.929	UTR_3_PRIME CG15747
3L	834113	3L_834113_SNP [dm3] 3L_834113_SNP [dm6]	C	T	3.537e^-4	0.929	UTR_5_PRIME CG42553 UPSTREAM snoRNA:Psi18S-1086 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9354866	2L_9354866_SNP [dm3] 2L_9354866_SNP [dm6]	T	C	3.542e^-4	0.929	INTERGENIC
2R	11025407	2R_11025407_SNP [dm3] 2R_15137902_SNP [dm6]	G	A	3.544e^-4	0.929	INTRON chn
2R	12394213	2R_12394213_SNP [dm3] 2R_16506708_SNP [dm6]	T	C	3.547e^-4	0.929	INTRON Sema-2a
3R	18526020	3R_18526020_INS [dm3] 3R_22700298_INS [dm6]	A	AA	3.551e^-4	0.929	UTR_3_PRIME Cyp6d4 DOWNSTREAM CCAP
2L	2292315	2L_2292315_SNP [dm3] 2L_2292315_SNP [dm6]	A	G	3.554e^-4	0.929	INTERGENIC
2R	11604223	2R_11604223_SNP [dm3] 2R_15716718_SNP [dm6]	T	G	3.558e^-4	0.929	INTERGENIC
X	20578993	X_20578993_SNP [dm3] X_20707966_SNP [dm6]	A	G	3.563e^-4	0.929	INTERGENIC	regulatory region REDfly_CRMs
3R	18216859	3R_18216859_SNP [dm3] 3R_22391137_SNP [dm6]	A	C	3.563e^-4	0.929	INTRON CG7059	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	13894637	2L_13894637_SNP [dm3] 2L_13894637_SNP [dm6]	A	T	3.567e^-4	0.929	INTRON CenG1A	TF binding site mE1_TFBS_cad
3L	296943	3L_296943_SNP [dm3] 3L_296943_SNP [dm6]	A	C	3.569e^-4	0.929	UPSTREAM RhoGEF3 INTRON RhoGEF3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	11739786	X_11739786_SNP [dm3] X_11845753_SNP [dm6]	C	T	3.577e^-4	0.929	SYNONYMOUS_CODING CG15740	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2L	9030268	2L_9030268_SNP [dm3] 2L_9030268_SNP [dm6]	T	A	3.578e^-4	0.929	INTRON CG9582 & 1 other
2R	7812848	2R_7812848_SNP [dm3] 2R_11925343_SNP [dm6]	A	G	3.579e^-4	0.929	INTERGENIC
3R	4046954	3R_4046954_SNP [dm3] 3R_8221232_SNP [dm6]	G	A	3.580e^-4	0.929	SYNONYMOUS_CODING CG18249	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19299817	2R_19299817_SNP [dm3] 2R_23412294_SNP [dm6]	A	T	3.589e^-4	0.929	DOWNSTREAM CG9812 INTERGENIC
2L	11421208	2L_11421208_SNP [dm3] 2L_11421208_SNP [dm6]	C	A	3.600e^-4	0.929	INTERGENIC
3R	13347169	3R_13347169_DEL [dm3] 3R_17521447_DEL [dm6]	TT	T	3.619e^-4	0.929	INTERGENIC
2R	2606580	2R_2606580_SNP [dm3] 2R_6719075_SNP [dm6]	G	C	3.626e^-4	0.929	SYNONYMOUS_CODING Zip42C.2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10877025	2R_10877025_SNP [dm3] 2R_14989520_SNP [dm6]	T	A	3.634e^-4	0.929	INTRON pcs & 1 other
3R	14829944	3R_14829944_SNP [dm3] 3R_19004222_SNP [dm6]	C	A	3.635e^-4	0.929	INTRON gukh	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11113923	3R_11113923_SNP [dm3] 3R_15288201_SNP [dm6]	A	G	3.636e^-4	0.929	UTR_5_PRIME Tm1 INTRON Tm1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	9028093	2L_9028093_SNP [dm3] 2L_9028093_SNP [dm6]	C	T	3.642e^-4	0.929	INTRON CG9582 & 1 other
3R	23642762	3R_23642762_SNP [dm3] 3R_27817040_SNP [dm6]	A	G	3.645e^-4	0.929	INTRON CG34353
3L	12474157	3L_12474157_SNP [dm3] 3L_12481057_SNP [dm6]	G	A	3.650e^-4	0.929	INTRON CG10663
3R	25225558	3R_25225558_SNP [dm3] 3R_29399836_SNP [dm6]	T	A	3.661e^-4	0.929	INTRON Ptp99A
2L	12156186	2L_12156186_SNP [dm3] 2L_12156186_SNP [dm6]	T	A	3.661e^-4	0.929	INTRON CG31760
2L	14575543	2L_14575543_SNP [dm3] 2L_14575543_SNP [dm6]	T	C	3.663e^-4	0.929	UPSTREAM CR44856 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	12292920	3R_12292920_SNP [dm3] 3R_16467198_SNP [dm6]	C	T	3.675e^-4	0.929	NON_SYNONYMOUS_CODING CG42232	TF binding site mE1_TFBS_cad
2R	14020463	2R_14020463_SNP [dm3] 2R_18132958_SNP [dm6]	T	G	3.690e^-4	0.929	INTRON Hsf	TF binding site BDTNP1_TFBS_dl
3R	20940082	3R_20940082_SNP [dm3] 3R_25114360_SNP [dm6]	C	A	3.693e^-4	0.929	SYNONYMOUS_CODING CG31108
2R	15892925	2R_15892925_SNP [dm3] 2R_20005420_SNP [dm6]	T	G	3.699e^-4	0.929	UPSTREAM CG16898 INTERGENIC
3L	15724141	3L_15724141_SNP [dm3] 3L_15731041_SNP [dm6]	T	G	3.700e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	15051507	2R_15051507_SNP [dm3] 2R_19164002_SNP [dm6]	T	C	3.702e^-4	0.929	UPSTREAM CG10737 DOWNSTREAM ena INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	14454955	2L_14454955_SNP [dm3] 2L_14454955_SNP [dm6]	A	T	3.707e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3L	14941923	3L_14941923_SNP [dm3] 3L_14948823_SNP [dm6]	A	T	3.707e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	14469993	2R_14469993_SNP [dm3] 2R_18582488_SNP [dm6]	G	C	3.725e^-4	0.929	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2L	13680342	2L_13680342_SNP [dm3] 2L_13680342_SNP [dm6]	A	G	3.726e^-4	0.929	INTRON CG31814	TF binding site BDTNP1_TFBS_twi
X	8262461	X_8262461_SNP [dm3] X_8368428_SNP [dm6]	C	G	3.729e^-4	0.929	INTERGENIC
3L	8693347	3L_8693347_SNP [dm3] 3L_8700247_SNP [dm6]	C	A	3.736e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3R	13389078	3R_13389078_SNP [dm3] 3R_17563356_SNP [dm6]	G	T	3.739e^-4	0.929	INTRON Hmx
3L	15660555	3L_15660555_SNP [dm3] 3L_15667455_SNP [dm6]	T	C	3.742e^-4	0.929	INTERGENIC
3L	15385299	3L_15385299_SNP [dm3] 3L_15392199_SNP [dm6]	T	C	3.743e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10742567	3L_10742567_SNP [dm3] 3L_10749467_SNP [dm6]	T	A	3.744e^-4	0.929	INTERGENIC
3L	12474217	3L_12474217_SNP [dm3] 3L_12481117_SNP [dm6]	T	G	3.750e^-4	0.929	INTRON CG10663
2R	13800933	2R_13800933_SNP [dm3] 2R_17913428_SNP [dm6]	G	C	3.753e^-4	0.929	INTRON Elk
3R	2132569	3R_2132569_SNP [dm3] 3R_6306847_SNP [dm6]	G	T	3.758e^-4	0.929	DOWNSTREAM CG31556 & 1 other INTERGENIC
3L	17161290	3L_17161290_SNP [dm3] 3L_17168190_SNP [dm6]	A	T	3.759e^-4	0.929	DOWNSTREAM CR43433 INTRON Rbp6
2L	9028253	2L_9028253_SNP [dm3] 2L_9028253_SNP [dm6]	G	T	3.763e^-4	0.929	INTRON CG9582 & 1 other
2L	2439159	2L_2439159_SNP [dm3] 2L_2439159_SNP [dm6]	T	C	3.774e^-4	0.929	INTRON dpp	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2L	17680443	2L_17680443_SNP [dm3] 2L_17680443_SNP [dm6]	A	T	3.788e^-4	0.929	INTRON CadN
2L	15348502	2L_15348502_INS [dm3] 2L_15348502_INS [dm6]	C	CCTGGCCATAAT...	3.794e^-4	0.929	INTERGENIC
3L	13926727	3L_13926727_SNP [dm3] 3L_13933627_SNP [dm6]	C	T	3.795e^-4	0.929	SYNONYMOUS_CODING Gl	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2R	995100	2R_995100_SNP [dm3] 2R_5107595_SNP [dm6]	C	T	3.810e^-4	0.929	INTERGENIC	transposable element FlyBase
2R	840616	2R_840616_SNP [dm3] 2R_4953111_SNP [dm6]	A	G	3.823e^-4	0.929	INTRON Ir41a	transposable element FlyBase
3R	13389766	3R_13389766_SNP [dm3] 3R_17564044_SNP [dm6]	T	C	3.823e^-4	0.929	INTRON Hmx
2R	14241833	2R_14241833_SNP [dm3] 2R_18354328_SNP [dm6]	C	A	3.827e^-4	0.929	INTRON sbb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	14671922	2L_14671922_SNP [dm3] 2L_14671922_SNP [dm6]	T	G	3.830e^-4	0.929	INTRON osp
3R	25225117	3R_25225117_SNP [dm3] 3R_29399395_SNP [dm6]	A	G	3.831e^-4	0.929	INTRON Ptp99A
3L	5782663	3L_5782663_SNP [dm3] 3L_5789563_SNP [dm6]	C	T	3.831e^-4	0.929	DOWNSTREAM Bre1 INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	5782670	3L_5782670_SNP [dm3] 3L_5789570_SNP [dm6]	T	A	3.831e^-4	0.929	DOWNSTREAM Bre1 INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	12378534	X_12378534_SNP [dm3] X_12484501_SNP [dm6]	G	T	3.834e^-4	0.929	INTERGENIC
2L	14410156	2L_14410156_SNP [dm3] 2L_14410156_SNP [dm6]	A	C	3.851e^-4	0.929	UPSTREAM elB DOWNSTREAM CR44733 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
2L	13680416	2L_13680416_SNP [dm3] 2L_13680416_SNP [dm6]	T	A	3.858e^-4	0.929	INTRON CG31814	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14020461	2R_14020461_INS [dm3] 2R_18132956_INS [dm6]	T	TGAAAGG	3.859e^-4	0.929	INTRON Hsf	TF binding site BDTNP1_TFBS_dl
3L	19448094	3L_19448094_SNP [dm3] 3L_19454994_SNP [dm6]	C	A	3.865e^-4	0.929	EXON CR45434	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	12006388	X_12006388_SNP [dm3] X_12112355_SNP [dm6]	T	C	3.867e^-4	0.929	SYNONYMOUS_CODING CG2750 INTRON CR43960 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	20306890	3R_20306890_SNP [dm3] 3R_24481168_SNP [dm6]	T	C	3.867e^-4	0.929	INTERGENIC
3L	6578317	3L_6578317_DEL [dm3] 3L_6585217_DEL [dm6]	CT	C	3.879e^-4	0.929	INTRON CG18769 & 1 other
2R	3488509	2R_3488509_SNP [dm3] 2R_7601004_SNP [dm6]	C	A	3.908e^-4	0.929	INTRON CG1358	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	11307025	2R_11307025_SNP [dm3] 2R_15419520_SNP [dm6]	G	A	3.918e^-4	0.929	SYNONYMOUS_CODING CG43729
3L	12959333	3L_12959333_SNP [dm3] 3L_12966233_SNP [dm6]	A	G	3.926e^-4	0.929	UPSTREAM Or69a INTRON Or69a
2L	20644011	2L_20644011_SNP [dm3] 2L_20644011_SNP [dm6]	A	G	3.945e^-4	0.929	SYNONYMOUS_CODING phr6-4 UPSTREAM CG17470	TF binding site mE1_TFBS_chinmo
3R	14677678	3R_14677678_DEL [dm3] 3R_18851956_DEL [dm6]	TTATT	T	3.945e^-4	0.929	UPSTREAM CR45633 & 1 other INTERGENIC
2L	7916466	2L_7916466_SNP [dm3] 2L_7916466_SNP [dm6]	C	T	3.948e^-4	0.929	INTRON Snoo
2R	13915111	2R_13915111_SNP [dm3] 2R_18027606_SNP [dm6]	G	T	3.954e^-4	0.929	INTERGENIC
2R	14921401	2R_14921401_SNP [dm3] 2R_19033896_SNP [dm6]	C	T	3.967e^-4	0.929	INTERGENIC
3L	7574926	3L_7574926_SNP [dm3] 3L_7581826_SNP [dm6]	A	G	3.967e^-4	0.929	INTERGENIC
X	15111838	X_15111838_SNP [dm3] X_15217805_SNP [dm6]	A	G	3.972e^-4	0.929	INTERGENIC
3L	14352430	3L_14352430_SNP [dm3] 3L_14359330_SNP [dm6]	G	T	3.981e^-4	0.929	INTRON fz	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	14410147	2L_14410147_SNP [dm3] 2L_14410147_SNP [dm6]	G	T	3.992e^-4	0.929	UPSTREAM elB DOWNSTREAM CR44733 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
3R	17081049	3R_17081049_SNP [dm3] 3R_21255327_SNP [dm6]	T	C	4.020e^-4	0.929	INTRON ETHR
3R	2228909	3R_2228909_SNP [dm3] 3R_6403187_SNP [dm6]	A	G	4.024e^-4	0.929	INTRON Dmtn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14805060	3R_14805060_SNP [dm3] 3R_18979338_SNP [dm6]	A	T	4.024e^-4	0.929	SYNONYMOUS_CODING Smu1 UPSTREAM CG12269	TF binding site mE1_TFBS_sens
3R	11901903	3R_11901903_SNP [dm3] 3R_16076181_SNP [dm6]	C	T	4.026e^-4	0.929	UPSTREAM Mhcl INTRON Mhcl
3L	3685486	3L_3685486_SNP [dm3] 3L_3685486_SNP [dm6]	C	G	4.036e^-4	0.929	INTERGENIC
3L	16398213	3L_16398213_SNP [dm3] 3L_16405113_SNP [dm6]	G	A	4.039e^-4	0.929	UTR_3_PRIME fax
3L	12429681	3L_12429681_SNP [dm3] 3L_12436581_SNP [dm6]	C	T	4.040e^-4	0.929	INTERGENIC
2R	1017672	2R_1017672_SNP [dm3] 2R_5130167_SNP [dm6]	A	G	4.043e^-4	0.929	DOWNSTREAM CR43256 INTERGENIC
3L	9578638	3L_9578638_SNP [dm3] 3L_9585538_SNP [dm6]	A	T	4.057e^-4	0.929	INTRON CG42673
3L	8833986	3L_8833986_SNP [dm3] 3L_8840886_SNP [dm6]	G	T	4.057e^-4	0.929	INTRON dally	TF binding site mE1_TFBS_HSA
3R	17687404	3R_17687404_INS [dm3] 3R_21861682_INS [dm6]	G	GG	4.058e^-4	0.929	UPSTREAM CR45644 EXON CR45645	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	20230765	2L_20230765_SNP [dm3] 2L_20230765_SNP [dm6]	A	G	4.059e^-4	0.929	INTERGENIC
3L	15389977	3L_15389977_SNP [dm3] 3L_15396877_SNP [dm6]	C	T	4.091e^-4	0.929	INTERGENIC
3L	17261033	3L_17261033_SNP [dm3] 3L_17267933_SNP [dm6]	T	C	4.099e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	20546239	2L_20546239_SNP [dm3] 2L_20546239_SNP [dm6]	A	G	4.105e^-4	0.929	INTERGENIC
X	15154178	X_15154178_SNP [dm3] X_15260145_SNP [dm6]	T	A	4.109e^-4	0.929	INTERGENIC
2R	12474766	2R_12474766_SNP [dm3] 2R_16587261_SNP [dm6]	A	G	4.118e^-4	0.929	UTR_3_PRIME CG8311 DOWNSTREAM RpLP2	TF binding site mE1_TFBS_cad
3R	14335886	3R_14335886_SNP [dm3] 3R_18510164_SNP [dm6]	T	C	4.121e^-4	0.929	INTRON fru
3R	9765103	3R_9765103_SNP [dm3] 3R_13939381_SNP [dm6]	T	A	4.126e^-4	0.929	INTERGENIC
2R	10034642	2R_10034642_SNP [dm3] 2R_14147137_SNP [dm6]	C	G	4.132e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	12380968	X_12380968_SNP [dm3] X_12486935_SNP [dm6]	G	T	4.139e^-4	0.929	UPSTREAM Cpr11A INTERGENIC
X	8423941	X_8423941_SNP [dm3] X_8529908_SNP [dm6]	C	T	4.140e^-4	0.929	UPSTREAM PIP82 INTRON Nrg	TF binding site BDTNP1_TFBS_dl
3L	8060108	3L_8060108_SNP [dm3] 3L_8067008_SNP [dm6]	T	A	4.141e^-4	0.929	UPSTREAM tRNA:CR32362 INTRON Ect4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	12676939	3L_12676939_SNP [dm3] 3L_12683839_SNP [dm6]	G	A	4.142e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1010652	2R_1010652_SNP [dm3] 2R_5123147_SNP [dm6]	G	A	4.143e^-4	0.929	UPSTREAM gus INTRON gus	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_zfh1
2L	13226608	2L_13226608_SNP [dm3] 2L_13226608_SNP [dm6]	A	C	4.145e^-4	0.929	UPSTREAM CG16813 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D
2L	9018619	2L_9018619_SNP [dm3] 2L_9018619_SNP [dm6]	C	T	4.147e^-4	0.929	INTERGENIC
3R	19080368	3R_19080368_SNP [dm3] 3R_23254646_SNP [dm6]	A	C	4.153e^-4	0.929	UTR_3_PRIME EloA DOWNSTREAM wda
X	16792303	X_16792303_INS [dm3] X_16898270_INS [dm6]	T	TT	4.154e^-4	0.929	INTERGENIC
3R	26191173	3R_26191173_SNP [dm3] 3R_30365451_SNP [dm6]	C	T	4.155e^-4	0.929	UTR_3_PRIME hdc
3R	18525992	3R_18525992_SNP [dm3] 3R_22700270_SNP [dm6]	C	T	4.163e^-4	0.929	UTR_3_PRIME Cyp6d4 DOWNSTREAM CCAP
3L	8208991	3L_8208991_SNP [dm3] 3L_8215891_SNP [dm6]	A	G	4.163e^-4	0.929	UTR_3_PRIME CG8012
2R	11021497	2R_11021497_SNP [dm3] 2R_15133992_SNP [dm6]	T	A	4.165e^-4	0.929	INTRON chn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	25271771	3R_25271771_SNP [dm3] 3R_29446049_SNP [dm6]	C	G	4.166e^-4	0.929	INTRON Ptp99A
3R	25121497	3R_25121497_SNP [dm3] 3R_29295775_SNP [dm6]	G	A	4.168e^-4	0.929	UTR_3_PRIME CG14506
3L	7464158	3L_7464158_SNP [dm3] 3L_7471058_SNP [dm6]	A	T	4.175e^-4	0.929	UPSTREAM CG8543 & 1 other INTERGENIC
2R	14020487	2R_14020487_SNP [dm3] 2R_18132982_SNP [dm6]	C	T	4.176e^-4	0.929	INTRON Hsf	TF binding site BDTNP1_TFBS_dl
3L	14024685	3L_14024685_SNP [dm3] 3L_14031585_SNP [dm6]	C	T	4.178e^-4	0.929	UTR_5_PRIME endos & 1 other UPSTREAM CG6650 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1275434	3L_1275434_SNP [dm3] 3L_1275434_SNP [dm6]	A	T	4.180e^-4	0.929	UPSTREAM CG32333 DOWNSTREAM CG9134 INTERGENIC	TF binding site mE1_TFBS_Trl
X	13234240	X_13234240_SNP [dm3] X_13340207_SNP [dm6]	A	G	4.197e^-4	0.929	UTR_3_PRIME CG15747
3L	16163524	3L_16163524_SNP [dm3] 3L_16170424_SNP [dm6]	T	A	4.200e^-4	0.929	UPSTREAM CG33796 DOWNSTREAM CG33795 INTERGENIC
3R	20941901	3R_20941901_SNP [dm3] 3R_25116179_SNP [dm6]	G	A	4.213e^-4	0.929	INTRON CG31108
2R	20321776	2R_20321776_SNP [dm3] 2R_24434253_SNP [dm6]	A	G	4.217e^-4	0.929	INTERGENIC
2L	9018831	2L_9018831_SNP [dm3] 2L_9018831_SNP [dm6]	A	C	4.220e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	5717633	3L_5717633_SNP [dm3] 3L_5724533_SNP [dm6]	A	G	4.224e^-4	0.929	INTRON sif
2R	2449715	2R_2449715_SNP [dm3] 2R_6562210_SNP [dm6]	C	A	4.230e^-4	0.929	INTRON jing
X	3434430	X_3434430_SNP [dm3] X_3540397_SNP [dm6]	A	G	4.236e^-4	0.929	INTRON CG32791
2R	10294730	2R_10294730_SNP [dm3] 2R_14407225_SNP [dm6]	A	G	4.256e^-4	0.929	INTERGENIC
3R	11092874	3R_11092874_SNP [dm3] 3R_15267152_SNP [dm6]	T	C	4.268e^-4	0.929	SYNONYMOUS_CODING CG14864 DOWNSTREAM Oscp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5599357	X_5599357_SNP [dm3] X_5705324_SNP [dm6]	T	C	4.272e^-4	0.929	INTRON CG4096	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2R	14921415	2R_14921415_SNP [dm3] 2R_19033910_SNP [dm6]	T	C	4.281e^-4	0.929	INTERGENIC
X	2479024	X_2479024_SNP [dm3] X_2584991_SNP [dm6]	T	A	4.281e^-4	0.929	SPLICE_SITE_REGION CG13760 UPSTREAM wds INTRON CG13760	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15773176	3R_15773176_SNP [dm3] 3R_19947454_SNP [dm6]	C	A	4.282e^-4	0.929	UPSTREAM CG4783 INTRON Hs6st
3L	18368355	3L_18368355_SNP [dm3] 3L_18375255_SNP [dm6]	G	A	4.286e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	8584746	3L_8584746_SNP [dm3] 3L_8591646_SNP [dm6]	C	A	4.287e^-4	0.929	NON_SYNONYMOUS_CODING CG43078 INTRON CG43078	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13475939	3L_13475939_SNP [dm3] 3L_13482839_SNP [dm6]	A	G	4.290e^-4	0.929	UTR_3_PRIME stv DOWNSTREAM Abp1
2L	14595185	2L_14595185_SNP [dm3] 2L_14595185_SNP [dm6]	T	A	4.305e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14775438	3L_14775438_SNP [dm3] 3L_14782338_SNP [dm6]	C	A	4.314e^-4	0.929	INTRON bmm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	20230716	2L_20230716_SNP [dm3] 2L_20230716_SNP [dm6]	A	G	4.319e^-4	0.929	INTERGENIC
3R	10963512	3R_10963512_SNP [dm3] 3R_15137790_SNP [dm6]	C	G	4.323e^-4	0.929	NON_SYNONYMOUS_CODING CG3984 UPSTREAM CG6912 EXON CR45600	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	15389922	3L_15389922_SNP [dm3] 3L_15396822_SNP [dm6]	C	T	4.332e^-4	0.929	INTERGENIC
X	18937601	X_18937601_SNP [dm3] X_19043568_SNP [dm6]	G	C	4.336e^-4	0.929	INTERGENIC
2R	16738641	2R_16738641_SNP [dm3] 2R_20851136_SNP [dm6]	T	G	4.338e^-4	0.929	SYNONYMOUS_CODING CG9993	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	7435185	2R_7435185_SNP [dm3] 2R_11547680_SNP [dm6]	A	G	4.341e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi
X	13355349	X_13355349_SNP [dm3] X_13461316_SNP [dm6]	C	A	4.342e^-4	0.929	INTRON Neto
X	16792348	X_16792348_SNP [dm3] X_16898315_SNP [dm6]	T	A	4.351e^-4	0.929	INTERGENIC
3R	21706866	3R_21706866_SNP [dm3] 3R_25881144_SNP [dm6]	T	G	4.357e^-4	0.929	UTR_5_PRIME Tsp96F UPSTREAM SppL	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	8548719	3L_8548719_SNP [dm3] 3L_8555619_SNP [dm6]	G	T	4.366e^-4	0.929	INTRON rhea
2L	215060	2L_215060_SNP [dm3] 2L_215060_SNP [dm6]	C	T	4.372e^-4	0.929	SYNONYMOUS_CODING kis	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	14410100	2L_14410100_SNP [dm3] 2L_14410100_SNP [dm6]	C	A	4.374e^-4	0.929	UPSTREAM elB DOWNSTREAM CR44733 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
3R	22580735	3R_22580735_SNP [dm3] 3R_26755013_SNP [dm6]	A	T	4.376e^-4	0.929	INTERGENIC
3R	14153381	3R_14153381_SNP [dm3] 3R_18327659_SNP [dm6]	C	T	4.376e^-4	0.929	INTRON CG31235
3L	13848765	3L_13848765_SNP [dm3] 3L_13855665_SNP [dm6]	G	T	4.379e^-4	0.929	SYNONYMOUS_CODING Hml
2R	16665069	2R_16665069_SNP [dm3] 2R_20777564_SNP [dm6]	A	T	4.385e^-4	0.929	SYNONYMOUS_CODING CG43710 DOWNSTREAM CG43711
2L	9074562	2L_9074562_DEL [dm3] 2L_9074562_DEL [dm6]	TGCCCGAT	T	4.392e^-4	0.929	INTERGENIC
3L	12429662	3L_12429662_SNP [dm3] 3L_12436562_SNP [dm6]	C	A	4.392e^-4	0.929	INTERGENIC
3R	13328995	3R_13328995_SNP [dm3] 3R_17503273_SNP [dm6]	G	C	4.397e^-4	0.929	INTRON Dscam3
3L	15235615	3L_15235615_SNP [dm3] 3L_15242515_SNP [dm6]	G	A	4.401e^-4	0.929	UTR_3_PRIME Tollo	TF binding site mE1_TFBS_HSA
2L	6717522	2L_6717522_SNP [dm3] 2L_6717522_SNP [dm6]	A	G	4.405e^-4	0.929	UPSTREAM Aatf INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2L	15090827	2L_15090827_SNP [dm3] 2L_15090827_SNP [dm6]	T	G	4.413e^-4	0.929	INTRON CG15270
2R	16344496	2R_16344496_SNP [dm3] 2R_20456991_SNP [dm6]	T	G	4.415e^-4	0.929	INTRON CG12484	TF binding site mE1_TFBS_inv
3R	11092637	3R_11092637_SNP [dm3] 3R_15266915_SNP [dm6]	T	A	4.418e^-4	0.929	SYNONYMOUS_CODING CG14864 DOWNSTREAM Oscp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24487292	3R_24487292_DEL [dm3] 3R_28661570_DEL [dm6]	CC	C	4.419e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	13379030	3R_13379030_INS [dm3] 3R_17553308_INS [dm6]	C	CC	4.420e^-4	0.929	INTERGENIC
3R	14721233	3R_14721233_SNP [dm3] 3R_18895511_SNP [dm6]	G	A	4.426e^-4	0.929	INTERGENIC
2L	14906597	2L_14906597_SNP [dm3] 2L_14906597_SNP [dm6]	C	T	4.429e^-4	0.929	DOWNSTREAM CG42313 INTERGENIC
3R	26187087	3R_26187087_SNP [dm3] 3R_30361365_SNP [dm6]	A	G	4.429e^-4	0.929	SYNONYMOUS_CODING hdc UTR_3_PRIME hdc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11733968	2R_11733968_SNP [dm3] 2R_15846463_SNP [dm6]	C	T	4.431e^-4	0.929	INTRON tun & 1 other
X	13234042	X_13234042_SNP [dm3] X_13340009_SNP [dm6]	G	A	4.433e^-4	0.929	UTR_3_PRIME CG15747
3L	14024389	3L_14024389_INS [dm3] 3L_14031289_INS [dm6]	A	AA	4.434e^-4	0.929	UPSTREAM CG6650 INTRON endos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19903329	2L_19903329_SNP [dm3] 2L_19903329_SNP [dm6]	A	C	4.435e^-4	0.929	INTRON sick
2R	10167059	2R_10167059_SNP [dm3] 2R_14279554_SNP [dm6]	C	T	4.438e^-4	0.929	UTR_5_PRIME Ih
3L	21926343	3L_21926343_SNP [dm3] 3L_21933243_SNP [dm6]	T	A	4.443e^-4	0.929	DOWNSTREAM mub INTERGENIC
2R	18681945	2R_18681945_SNP [dm3] 2R_22794440_SNP [dm6]	A	C	4.445e^-4	0.929	INTRON CG42260
2R	11025386	2R_11025386_SNP [dm3] 2R_15137881_SNP [dm6]	G	A	4.448e^-4	0.929	INTRON chn
X	5869088	X_5869088_SNP [dm3] X_5975055_SNP [dm6]	A	G	4.451e^-4	0.929	INTRON Grip
3L	8602933	3L_8602933_SNP [dm3] 3L_8609833_SNP [dm6]	T	C	4.457e^-4	0.929	UTR_5_PRIME CG6282	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7574927	3L_7574927_SNP [dm3] 3L_7581827_SNP [dm6]	T	A	4.463e^-4	0.929	INTERGENIC
X	5599353	X_5599353_SNP [dm3] X_5705320_SNP [dm6]	G	A	4.478e^-4	0.929	INTRON CG4096	TF binding site mE1_TFBS_HSA mE1_TFBS_run
3L	662745	3L_662745_SNP [dm3] 3L_662745_SNP [dm6]	A	G	4.481e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
2L	12641376	2L_12641376_SNP [dm3] 2L_12641376_SNP [dm6]	C	T	4.492e^-4	0.929	INTRON Ref2
X	3418311	X_3418311_SNP [dm3] X_3524278_SNP [dm6]	G	T	4.500e^-4	0.929	INTRON CG32791
X	13378724	X_13378724_SNP [dm3] X_13484691_SNP [dm6]	T	G	4.503e^-4	0.929	INTRON Neto	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	832953	3L_832953_SNP [dm3] 3L_832953_SNP [dm6]	C	T	4.508e^-4	0.929	UTR_5_PRIME CG13900 UPSTREAM snoRNA:Psi18S-110 & 1 other DOWNSTREAM snoRNA:Psi18S-1086	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2R	5250626	2R_5250626_SNP [dm3] 2R_9363121_SNP [dm6]	A	C	4.516e^-4	0.929	UPSTREAM CG12158 INTRON CG13954
2L	11409861	2L_11409861_SNP [dm3] 2L_11409861_SNP [dm6]	A	T	4.516e^-4	0.929	INTERGENIC	regulatory region REDfly_CRMs
2R	15051516	2R_15051516_DEL [dm3] 2R_19164011_DEL [dm6]	AA	A	4.523e^-4	0.929	UPSTREAM CG10737 DOWNSTREAM ena INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	17457977	X_17457977_SNP [dm3] X_17563944_SNP [dm6]	C	G	4.527e^-4	0.929	INTERGENIC
3R	13348287	3R_13348287_SNP [dm3] 3R_17522565_SNP [dm6]	G	T	4.528e^-4	0.929	INTERGENIC
3R	13032388	3R_13032388_SNP [dm3] 3R_17206666_SNP [dm6]	G	T	4.534e^-4	0.929	INTERGENIC
X	11823941	X_11823941_SNP [dm3] X_11929908_SNP [dm6]	A	T	4.536e^-4	0.929	SPLICE_SITE_REGION CG10362 INTRON CG10362
X	11823946	X_11823946_SNP [dm3] X_11929913_SNP [dm6]	A	T	4.536e^-4	0.929	INTRON CG10362
X	3432628	X_3432628_SNP [dm3] X_3538595_SNP [dm6]	A	T	4.538e^-4	0.929	INTRON CG32791
3R	23736927	3R_23736927_SNP [dm3] 3R_27911205_SNP [dm6]	C	A	4.543e^-4	0.929	INTERGENIC
2R	9686512	2R_9686512_SNP [dm3] 2R_13799007_SNP [dm6]	C	T	4.544e^-4	0.929	INTRON Cpr50Cb
2L	493982	2L_493982_SNP [dm3] 2L_493982_SNP [dm6]	T	A	4.549e^-4	0.929	INTRON ush
3L	12429646	3L_12429646_SNP [dm3] 3L_12436546_SNP [dm6]	A	G	4.560e^-4	0.929	INTERGENIC
X	15111831	X_15111831_SNP [dm3] X_15217798_SNP [dm6]	T	C	4.568e^-4	0.929	INTERGENIC
3R	11484879	3R_11484879_SNP [dm3] 3R_15659157_SNP [dm6]	T	C	4.570e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	7464159	3L_7464159_SNP [dm3] 3L_7471059_SNP [dm6]	C	T	4.585e^-4	0.929	UPSTREAM CG8543 & 1 other INTERGENIC
X	16405215	X_16405215_SNP [dm3] X_16511182_SNP [dm6]	A	T	4.588e^-4	0.929	INTRON para
3R	14051713	3R_14051713_SNP [dm3] 3R_18225991_SNP [dm6]	T	C	4.593e^-4	0.929	START_GAINED CG7168 UTR_5_PRIME CG7168 UPSTREAM Mdh2	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	11303967	3R_11303967_SNP [dm3] 3R_15478245_SNP [dm6]	G	T	4.595e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4199534	2L_4199534_SNP [dm3] 2L_4199534_SNP [dm6]	A	G	4.608e^-4	0.929	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	2759156	3L_2759156_SNP [dm3] 3L_2759156_SNP [dm6]	T	C	4.621e^-4	0.929	INTRON Mrtf
3L	1578636	3L_1578636_SNP [dm3] 3L_1578636_SNP [dm6]	T	A	4.628e^-4	0.929	INTRON CG13917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_jumu
3L	10036132	3L_10036132_SNP [dm3] 3L_10043032_SNP [dm6]	T	C	4.635e^-4	0.929	INTRON dpr6
2L	14410185	2L_14410185_INS [dm3] 2L_14410185_INS [dm6]	C	TTTCACTTAGATT...	4.645e^-4	0.929	UPSTREAM elB DOWNSTREAM CR44733 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
3L	6108352	3L_6108352_SNP [dm3] 3L_6115252_SNP [dm6]	A	C	4.652e^-4	0.929	INTRON Ets65A	TF binding site mE1_TFBS_Kr
X	16188366	X_16188366_SNP [dm3] X_16294333_SNP [dm6]	C	A	4.653e^-4	0.929	DOWNSTREAM caz INTRON CG9911
2L	3463123	2L_3463123_SNP [dm3] 2L_3463123_SNP [dm6]	C	A	4.655e^-4	0.929	UTR_3_PRIME msl-2 DOWNSTREAM mir-4971
3L	5367425	3L_5367425_SNP [dm3] 3L_5374325_SNP [dm6]	C	T	4.664e^-4	0.929	INTERGENIC
2L	7721539	2L_7721539_SNP [dm3] 2L_7721539_SNP [dm6]	G	C	4.664e^-4	0.929	NON_SYNONYMOUS_CODING CG13794
X	19240011	X_19240011_SNP [dm3] X_19345978_SNP [dm6]	A	G	4.670e^-4	0.929	INTRON nAChRalpha7
2L	9075133	2L_9075133_SNP [dm3] 2L_9075133_SNP [dm6]	C	T	4.678e^-4	0.929	INTERGENIC
3R	14677979	3R_14677979_SNP [dm3] 3R_18852257_SNP [dm6]	C	T	4.680e^-4	0.929	UPSTREAM CG31226 INTERGENIC
3L	9332300	3L_9332300_SNP [dm3] 3L_9339200_SNP [dm6]	A	T	4.691e^-4	0.929	DOWNSTREAM PGRP-LA INTRON PGRP-LC
2R	8287921	2R_8287921_SNP [dm3] 2R_12400416_SNP [dm6]	A	G	4.692e^-4	0.929	INTERGENIC
3R	1327782	3R_1327782_SNP [dm3] 3R_5502060_SNP [dm6]	C	T	4.700e^-4	0.929	SYNONYMOUS_CODING CG31547	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13377664	3R_13377664_SNP [dm3] 3R_17551942_SNP [dm6]	T	G	4.704e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22402423	3R_22402423_DEL [dm3] 3R_26576701_DEL [dm6]	AGAGTTAATGAA...	A	4.708e^-4	0.929	UTR_3_PRIME scrib INTRON scrib
X	5599984	X_5599984_SNP [dm3] X_5705951_SNP [dm6]	T	C	4.712e^-4	0.929	INTRON CG4096
2L	2111329	2L_2111329_INS [dm3] 2L_2111329_INS [dm6]	A	AA	4.719e^-4	0.929	INTERGENIC
2L	14593966	2L_14593966_SNP [dm3] 2L_14593966_SNP [dm6]	A	T	4.734e^-4	0.929	INTERGENIC
2L	20854349	2L_20854349_SNP [dm3] 2L_20854349_SNP [dm6]	T	C	4.737e^-4	0.929	INTRON twit
2L	14590487	2L_14590487_SNP [dm3] 2L_14590487_SNP [dm6]	T	C	4.741e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11230920	3L_11230920_SNP [dm3] 3L_11237820_SNP [dm6]	A	C	4.743e^-4	0.929	UPSTREAM CR44718 DOWNSTREAM CR44719 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	13234686	X_13234686_SNP [dm3] X_13340653_SNP [dm6]	A	G	4.743e^-4	0.929	UTR_3_PRIME CG15747
3R	13348290	3R_13348290_SNP [dm3] 3R_17522568_SNP [dm6]	C	T	4.746e^-4	0.929	INTERGENIC
2L	13266403	2L_13266403_SNP [dm3] 2L_13266403_SNP [dm6]	G	A	4.755e^-4	0.929	UPSTREAM CG44085 & 1 other INTRON CG44085	TF binding site BDTNP1_TFBS_dl
3R	20241513	3R_20241513_SNP [dm3] 3R_24415791_SNP [dm6]	G	A	4.757e^-4	0.929	INTRON nAChRalpha1
2L	9076854	2L_9076854_SNP [dm3] 2L_9076854_SNP [dm6]	A	C	4.758e^-4	0.929	UPSTREAM CG12439 INTERGENIC
2L	12225387	2L_12225387_SNP [dm3] 2L_12225387_SNP [dm6]	G	A	4.760e^-4	0.929	INTRON aret
2R	4484333	2R_4484333_SNP [dm3] 2R_8596828_SNP [dm6]	A	T	4.768e^-4	0.929	DOWNSTREAM CG8735 INTERGENIC
X	11824022	X_11824022_INS [dm3] X_11929989_INS [dm6]	T	TTC	4.784e^-4	0.929	INTRON CG10362
3L	11479196	3L_11479196_SNP [dm3] 3L_11486096_SNP [dm6]	C	A	4.789e^-4	0.929	INTERGENIC
2L	14410181	2L_14410181_SNP [dm3] 2L_14410181_SNP [dm6]	C	T	4.790e^-4	0.929	UPSTREAM elB DOWNSTREAM CR44733 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
2R	1001566	2R_1001566_SNP [dm3] 2R_5114061_SNP [dm6]	T	C	4.800e^-4	0.929	INTERGENIC	transposable element FlyBase
3L	18368354	3L_18368354_SNP [dm3] 3L_18375254_SNP [dm6]	T	A	4.816e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_HSA
X	5038674	X_5038674_SNP [dm3] X_5144641_SNP [dm6]	A	G	4.817e^-4	0.929	INTRON rg & 1 other
X	20579493	X_20579493_SNP [dm3] X_20708466_SNP [dm6]	C	A	4.821e^-4	0.929	INTERGENIC	regulatory region REDfly_CRMs
3R	15628971	3R_15628971_SNP [dm3] 3R_19803249_SNP [dm6]	T	C	4.822e^-4	0.929	DOWNSTREAM tRNA:CR31471 INTRON bnl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	6208645	2L_6208645_SNP [dm3] 2L_6208645_SNP [dm6]	C	G	4.824e^-4	0.929	NON_SYNONYMOUS_CODING CG34380 UTR_3_PRIME CG34380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12429679	3L_12429679_SNP [dm3] 3L_12436579_SNP [dm6]	C	T	4.824e^-4	0.929	INTERGENIC
2L	14391209	2L_14391209_SNP [dm3] 2L_14391209_SNP [dm6]	G	A	4.832e^-4	0.929	SYNONYMOUS_CODING elB	TF binding site mE1_TFBS_chinmo
3R	15630112	3R_15630112_SNP [dm3] 3R_19804390_SNP [dm6]	G	A	4.836e^-4	0.929	INTRON bnl	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16723883	2R_16723883_SNP [dm3] 2R_20836378_SNP [dm6]	C	T	4.841e^-4	0.929	UPSTREAM insc & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	10020268	2R_10020268_INS [dm3] 2R_14132763_INS [dm6]	A	ACTA	4.860e^-4	0.929	INTRON Prosap	TF binding site mE1_TFBS_inv
3L	11291432	3L_11291432_SNP [dm3] 3L_11298332_SNP [dm6]	G	C	4.866e^-4	0.929	INTERGENIC	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	15717138	3L_15717138_SNP [dm3] 3L_15724038_SNP [dm6]	C	A	4.867e^-4	0.929	INTRON comm
2L	14606006	2L_14606006_SNP [dm3] 2L_14606006_SNP [dm6]	C	A	4.869e^-4	0.929	INTRON osp
2L	9491149	2L_9491149_SNP [dm3] 2L_9491149_SNP [dm6]	A	C	4.871e^-4	0.929	DOWNSTREAM Gdi INTERGENIC
2R	19336724	2R_19336724_SNP [dm3] 2R_23449201_SNP [dm6]	C	A	4.874e^-4	0.929	INTRON CG43795
2L	2123059	2L_2123059_SNP [dm3] 2L_2123059_SNP [dm6]	A	G	4.878e^-4	0.929	INTERGENIC
3R	11095870	3R_11095870_SNP [dm3] 3R_15270148_SNP [dm6]	T	C	4.881e^-4	0.929	DOWNSTREAM Cp190 INTRON Zip88E	TF binding site mE1_TFBS_HSA
3R	10966319	3R_10966319_SNP [dm3] 3R_15140597_SNP [dm6]	T	C	4.888e^-4	0.929	SYNONYMOUS_CODING CG3987 UPSTREAM CR45600
X	19228832	X_19228832_SNP [dm3] X_19334799_SNP [dm6]	A	G	4.900e^-4	0.929	INTRON nAChRalpha7
3R	18526040	3R_18526040_INS [dm3] 3R_22700318_INS [dm6]	T	TGCTT	4.914e^-4	0.929	DOWNSTREAM CCAP & 1 other INTERGENIC
3L	804165	3L_804165_SNP [dm3] 3L_804165_SNP [dm6]	T	A	4.920e^-4	0.929	UPSTREAM CG13898 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	16723205	3L_16723205_SNP [dm3] 3L_16730105_SNP [dm6]	T	C	4.922e^-4	0.929	SYNONYMOUS_CODING Dbp73D	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
X	16428031	X_16428031_DEL [dm3] X_16533998_DEL [dm6]	TC	T	4.930e^-4	0.929	UPSTREAM para INTERGENIC
2L	14575541	2L_14575541_SNP [dm3] 2L_14575541_SNP [dm6]	G	C	4.934e^-4	0.929	UPSTREAM CR44856 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	11421197	2L_11421197_SNP [dm3] 2L_11421197_SNP [dm6]	A	C	4.935e^-4	0.929	INTERGENIC
2L	12090785	2L_12090785_SNP [dm3] 2L_12090785_SNP [dm6]	T	G	4.941e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3R	22755930	3R_22755930_SNP [dm3] 3R_26930208_SNP [dm6]	T	A	4.946e^-4	0.929	INTRON sda
X	5599347	X_5599347_SNP [dm3] X_5705314_SNP [dm6]	A	T	4.948e^-4	0.929	INTRON CG4096	TF binding site mE1_TFBS_HSA mE1_TFBS_run
3R	23126269	3R_23126269_SNP [dm3] 3R_27300547_SNP [dm6]	C	A	4.953e^-4	0.929	INTRON CG3339
2L	9017981	2L_9017981_SNP [dm3] 2L_9017981_SNP [dm6]	C	G	4.962e^-4	0.929	INTERGENIC
3L	16511661	3L_16511661_SNP [dm3] 3L_16518561_SNP [dm6]	G	A	4.965e^-4	0.929	NON_SYNONYMOUS_CODING CG43373
3L	17038219	3L_17038219_SNP [dm3] 3L_17045119_SNP [dm6]	T	A	4.967e^-4	0.929	UPSTREAM CG14057 & 1 other DOWNSTREAM Papst2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	6451000	3R_6451000_SNP [dm3] 3R_10625278_SNP [dm6]	C	G	4.969e^-4	0.929	INTRON hth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	9354861	2L_9354861_SNP [dm3] 2L_9354861_SNP [dm6]	C	T	4.979e^-4	0.929	INTERGENIC
2R	13985940	2R_13985940_SNP [dm3] 2R_18098435_SNP [dm6]	T	C	4.984e^-4	0.929	SYNONYMOUS_CODING CG5098
3L	12179585	3L_12179585_SNP [dm3] 3L_12186485_SNP [dm6]	A	T	5.002e^-4	0.929	INTRON CG6910	TF binding site mE1_TFBS_cad
2L	14604808	2L_14604808_SNP [dm3] 2L_14604808_SNP [dm6]	A	G	5.005e^-4	0.929	SYNONYMOUS_CODING osp	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	10949100	3R_10949100_SNP [dm3] 3R_15123378_SNP [dm6]	A	T	5.011e^-4	0.929	INTRON CG42788
3L	14374986	3L_14374986_SNP [dm3] 3L_14381886_SNP [dm6]	T	C	5.018e^-4	0.929	UPSTREAM CG43120 INTERGENIC
3L	13492413	3L_13492413_DEL [dm3] 3L_13499313_DEL [dm6]	TCGTTTTCGTCT...	T	5.019e^-4	0.929	INTRON Tgi	TF binding site mE1_TFBS_chinmo
3R	9914188	3R_9914188_SNP [dm3] 3R_14088466_SNP [dm6]	T	C	5.020e^-4	0.929	DOWNSTREAM foxo INTERGENIC	TF binding site mE1_TFBS_bab1
3R	8134508	3R_8134508_SNP [dm3] 3R_12308786_SNP [dm6]	T	C	5.029e^-4	0.929	INTERGENIC
2L	15909577	2L_15909577_DEL [dm3] 2L_15909577_DEL [dm6]	TT	T	5.030e^-4	0.929	INTRON beat-Ib
3R	11041721	3R_11041721_SNP [dm3] 3R_15215999_SNP [dm6]	G	T	5.030e^-4	0.929	SYNONYMOUS_CODING SIDL	TF binding site mE1_TFBS_cad
2R	17000534	2R_17000534_SNP [dm3] 2R_21113029_SNP [dm6]	T	A	5.043e^-4	0.929	INTRON ktub
2L	9042591	2L_9042591_SNP [dm3] 2L_9042591_SNP [dm6]	A	T	5.050e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	11634069	3R_11634069_SNP [dm3] 3R_15808347_SNP [dm6]	A	G	5.054e^-4	0.929	INTRON alpha-Man-IIb
3L	19974754	3L_19974754_SNP [dm3] 3L_19981654_SNP [dm6]	A	G	5.058e^-4	0.929	UPSTREAM CG17732 INTERGENIC
3R	13537300	3R_13537300_SNP [dm3] 3R_17711578_SNP [dm6]	G	C	5.065e^-4	0.929	INTRON osa	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	15024954	2L_15024954_SNP [dm3] 2L_15024954_SNP [dm6]	T	C	5.071e^-4	0.929	INTRON GABA-B-R1
2L	2036517	2L_2036517_SNP [dm3] 2L_2036517_SNP [dm6]	T	A	5.074e^-4	0.929	NON_SYNONYMOUS_CODING lectin-22C UPSTREAM CG42296
3L	12854618	3L_12854618_SNP [dm3] 3L_12861518_SNP [dm6]	G	A	5.080e^-4	0.929	UPSTREAM CG32107 DOWNSTREAM CG10943 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	16724471	3L_16724471_SNP [dm3] 3L_16731371_SNP [dm6]	T	G	5.084e^-4	0.929	UPSTREAM Dbp73D INTERGENIC	TF binding site mE1_TFBS_HSA
2L	19224346	2L_19224346_SNP [dm3] 2L_19224346_SNP [dm6]	A	G	5.090e^-4	0.929	INTERGENIC
2L	10242469	2L_10242469_SNP [dm3] 2L_10242469_SNP [dm6]	C	A	5.092e^-4	0.929	UPSTREAM CR44995 DOWNSTREAM chico & 1 other INTERGENIC
2L	14595774	2L_14595774_SNP [dm3] 2L_14595774_SNP [dm6]	A	T	5.093e^-4	0.929	INTERGENIC
X	12424758	X_12424758_DEL [dm3] X_12530725_DEL [dm6]	TGG	T	5.094e^-4	0.929	INTRON CG43921
3R	11265066	3R_11265066_SNP [dm3] 3R_15439344_SNP [dm6]	T	C	5.105e^-4	0.929	UPSTREAM Act88F INTERGENIC	regulatory region REDfly_CRMs
3L	12429280	3L_12429280_SNP [dm3] 3L_12436180_SNP [dm6]	A	C	5.107e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	9463582	X_9463582_SNP [dm3] X_9569549_SNP [dm6]	G	C	5.114e^-4	0.929	SYNONYMOUS_CODING Cubn	TF binding site mE1_TFBS_chinmo
2L	19840707	2L_19840707_SNP [dm3] 2L_19840707_SNP [dm6]	T	C	5.114e^-4	0.929	INTRON sick
2L	19286479	2L_19286479_SNP [dm3] 2L_19286479_SNP [dm6]	A	G	5.120e^-4	0.929	INTERGENIC
3L	17038156	3L_17038156_SNP [dm3] 3L_17045056_SNP [dm6]	A	G	5.122e^-4	0.929	UPSTREAM CG14057 DOWNSTREAM Papst2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	14677775	3R_14677775_SNP [dm3] 3R_18852053_SNP [dm6]	A	T	5.124e^-4	0.929	UPSTREAM CR45633 & 1 other INTERGENIC
3R	23643015	3R_23643015_SNP [dm3] 3R_27817293_SNP [dm6]	G	T	5.125e^-4	0.929	INTRON CG34353	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11618710	3R_11618710_SNP [dm3] 3R_15792988_SNP [dm6]	G	T	5.128e^-4	0.929	UPSTREAM c_3_G & 1 other INTRON Acyp2	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_Ubx
2L	8312105	2L_8312105_SNP [dm3] 2L_8312105_SNP [dm6]	A	G	5.135e^-4	0.929	UPSTREAM CG7810 INTRON CG7806	TF binding site mE1_TFBS_HSA
2R	1032452	2R_1032452_SNP [dm3] 2R_5144947_SNP [dm6]	A	G	5.135e^-4	0.929	INTRON Atf6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17550438	3R_17550438_SNP [dm3] 3R_21724716_SNP [dm6]	T	C	5.139e^-4	0.929	INTERGENIC
3L	7462560	3L_7462560_SNP [dm3] 3L_7469460_SNP [dm6]	C	G	5.140e^-4	0.929	DOWNSTREAM CG8543 & 3 others INTERGENIC
2R	8366637	2R_8366637_SNP [dm3] 2R_12479132_SNP [dm6]	A	C	5.146e^-4	0.929	INTRON Dh44-R2	TF binding site mE1_TFBS_chinmo
3L	22124649	3L_22124649_SNP [dm3] 3L_22131549_SNP [dm6]	C	A	5.149e^-4	0.929	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	8000897	3L_8000897_SNP [dm3] 3L_8007797_SNP [dm6]	G	A	5.156e^-4	0.929	INTRON nmo
2R	12900698	2R_12900698_SNP [dm3] 2R_17013193_SNP [dm6]	C	A	5.161e^-4	0.929	INTRON Ehbp1
3R	19392014	3R_19392014_SNP [dm3] 3R_23566292_SNP [dm6]	G	A	5.170e^-4	0.929	INTRON beat-IV
3L	22223570	3L_22223570_SNP [dm3] 3L_22230470_SNP [dm6]	A	C	5.170e^-4	0.929	INTRON olf413
3L	12959454	3L_12959454_SNP [dm3] 3L_12966354_SNP [dm6]	C	T	5.174e^-4	0.929	UPSTREAM Or69a INTRON Or69a
3R	25052238	3R_25052238_SNP [dm3] 3R_29226516_SNP [dm6]	G	A	5.185e^-4	0.929	SYNONYMOUS_CODING CG14507 DOWNSTREAM Brd8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	994936	2R_994936_SNP [dm3] 2R_5107431_SNP [dm6]	C	T	5.186e^-4	0.929	INTERGENIC	transposable element FlyBase
3L	3038614	3L_3038614_SNP [dm3] 3L_3038614_SNP [dm6]	G	A	5.186e^-4	0.929	INTRON CG2162	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17161367	3L_17161367_SNP [dm3] 3L_17168267_SNP [dm6]	T	C	5.190e^-4	0.929	DOWNSTREAM CR43433 INTRON Rbp6
X	2479154	X_2479154_SNP [dm3] X_2585121_SNP [dm6]	A	T	5.192e^-4	0.929	SYNONYMOUS_CODING CG13760 UPSTREAM wds	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	5600012	X_5600012_SNP [dm3] X_5705979_SNP [dm6]	A	C	5.197e^-4	0.929	INTRON CG4096
3L	16716558	3L_16716558_SNP [dm3] 3L_16723458_SNP [dm6]	C	T	5.201e^-4	0.929	SYNONYMOUS_CODING Dab UTR_3_PRIME Dab	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14020491	2R_14020491_INS [dm3] 2R_18132986_INS [dm6]	G	GCAC	5.207e^-4	0.929	INTRON Hsf	TF binding site BDTNP1_TFBS_dl
3L	21926271	3L_21926271_SNP [dm3] 3L_21933171_SNP [dm6]	C	T	5.214e^-4	0.929	DOWNSTREAM mub INTERGENIC
3L	16290115	3L_16290115_SNP [dm3] 3L_16297015_SNP [dm6]	T	G	5.216e^-4	0.929	INTERGENIC
2R	1032492	2R_1032492_DEL [dm3] 2R_5144987_DEL [dm6]	TTCTGCTTTAGAATCA...	T	5.219e^-4	0.929	INTRON Atf6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8247529	2R_8247529_SNP [dm3] 2R_12360024_SNP [dm6]	G	A	5.229e^-4	0.929	SYNONYMOUS_CODING CG30043 DOWNSTREAM CG30049	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	21864585	2L_21864585_SNP [dm3] 2L_21864585_SNP [dm6]	C	T	5.230e^-4	0.929	DOWNSTREAM CR44918 INTRON CR44917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3R	6451007	3R_6451007_SNP [dm3] 3R_10625285_SNP [dm6]	T	G	5.246e^-4	0.929	INTRON hth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	13348749	3R_13348749_SNP [dm3] 3R_17523027_SNP [dm6]	C	G	5.248e^-4	0.929	INTERGENIC
3L	17757268	3L_17757268_SNP [dm3] 3L_17764168_SNP [dm6]	A	C	5.256e^-4	0.929	UPSTREAM Adgf-A & 1 other INTERGENIC	TF binding site mE1_TFBS_Trl
2L	493949	2L_493949_SNP [dm3] 2L_493949_SNP [dm6]	G	A	5.260e^-4	0.929	INTRON ush
3R	2240813	3R_2240813_SNP [dm3] 3R_6415091_SNP [dm6]	T	A	5.263e^-4	0.929	INTRON gpp
3L	13849053	3L_13849053_SNP [dm3] 3L_13855953_SNP [dm6]	T	C	5.267e^-4	0.929	SYNONYMOUS_CODING Hml
3L	832920	3L_832920_SNP [dm3] 3L_832920_SNP [dm6]	G	T	5.276e^-4	0.929	SYNONYMOUS_CODING CG13900 UPSTREAM snoRNA:Psi18S-110 & 1 other DOWNSTREAM snoRNA:Psi18S-1086	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	15580733	3R_15580733_SNP [dm3] 3R_19755011_SNP [dm6]	C	A	5.277e^-4	0.929	INTRON GluClalpha
3L	15750714	3L_15750714_SNP [dm3] 3L_15757614_SNP [dm6]	G	T	5.284e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13234239	X_13234239_SNP [dm3] X_13340206_SNP [dm6]	C	T	5.288e^-4	0.929	UTR_3_PRIME CG15747
3L	10629171	3L_10629171_SNP [dm3] 3L_10636071_SNP [dm6]	G	A	5.297e^-4	0.929	SYNONYMOUS_CODING E_z_
3R	24245473	3R_24245473_SNP [dm3] 3R_28419751_SNP [dm6]	A	G	5.305e^-4	0.929	INTRON beat-VI
3R	13045297	3R_13045297_SNP [dm3] 3R_17219575_SNP [dm6]	G	C	5.309e^-4	0.929	INTRON CG31262
X	13234072	X_13234072_SNP [dm3] X_13340039_SNP [dm6]	T	C	5.310e^-4	0.929	UTR_3_PRIME CG15747
2R	18746444	2R_18746444_DEL [dm3] 2R_22858921_DEL [dm6]	CATAC	G	5.312e^-4	0.929	UPSTREAM inaD INTERGENIC
X	20356036	X_20356036_SNP [dm3] X_20485009_SNP [dm6]	A	C	5.324e^-4	0.929	INTRON RhoGAP19D
2L	17839654	2L_17839654_SNP [dm3] 2L_17839654_SNP [dm6]	T	C	5.332e^-4	0.929	INTRON CadN2
2L	8121966	2L_8121966_SNP [dm3] 2L_8121966_SNP [dm6]	G	T	5.341e^-4	0.929	SYNONYMOUS_CODING mon2	TF binding site mE1_TFBS_cad
2L	2439094	2L_2439094_SNP [dm3] 2L_2439094_SNP [dm6]	G	A	5.343e^-4	0.929	INTRON dpp	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	21880056	3L_21880056_DEL [dm3] 3L_21886956_DEL [dm6]	TATTTAGGCAAAT...	T	5.344e^-4	0.929	INTRON mub EXON CR43878	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	12403770	X_12403770_SNP [dm3] X_12509737_SNP [dm6]	A	C	5.345e^-4	0.929	INTRON CG2556
3L	1727907	3L_1727907_SNP [dm3] 3L_1727907_SNP [dm6]	T	C	5.350e^-4	0.929	INTRON drpr	TF binding site BDTNP1_TFBS_twi
3L	6933240	3L_6933240_SNP [dm3] 3L_6940140_SNP [dm6]	T	C	5.353e^-4	0.929	UPSTREAM CR45412 INTERGENIC
2L	1714084	2L_1714084_SNP [dm3] 2L_1714084_SNP [dm6]	C	T	5.354e^-4	0.929	SYNONYMOUS_CODING frtz	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	4327660	X_4327660_SNP [dm3] X_4433627_SNP [dm6]	T	C	5.355e^-4	0.929	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs
X	17562505	X_17562505_SNP [dm3] X_17668472_SNP [dm6]	A	T	5.358e^-4	0.929	DOWNSTREAM CG12990 INTRON beta-Spec
2R	16241500	2R_16241500_SNP [dm3] 2R_20353995_SNP [dm6]	T	A	5.359e^-4	0.929	DOWNSTREAM CG11192 INTERGENIC
3L	9698505	3L_9698505_SNP [dm3] 3L_9705405_SNP [dm6]	C	T	5.359e^-4	0.929	NON_SYNONYMOUS_CODING CG16711	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6561552	2R_6561552_SNP [dm3] 2R_10674047_SNP [dm6]	G	T	5.360e^-4	0.929	INTRON stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11852139	2L_11852139_SNP [dm3] 2L_11852139_SNP [dm6]	T	G	5.368e^-4	0.929	NON_SYNONYMOUS_CODING Mal-B2 INTRON Pde1c
2L	19326301	2L_19326301_SNP [dm3] 2L_19326301_SNP [dm6]	T	C	5.369e^-4	0.929	DOWNSTREAM CR45700 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	12429648	3L_12429648_SNP [dm3] 3L_12436548_SNP [dm6]	C	T	5.371e^-4	0.929	INTERGENIC
3R	23304280	3R_23304280_SNP [dm3] 3R_27478558_SNP [dm6]	T	A	5.373e^-4	0.929	UPSTREAM Cyp6a18 INTERGENIC
2R	11021533	2R_11021533_SNP [dm3] 2R_15134028_SNP [dm6]	T	C	5.376e^-4	0.929	INTRON chn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	19179014	X_19179014_SNP [dm3] X_19284981_SNP [dm6]	G	A	5.385e^-4	0.929	UPSTREAM CG8034 INTRON CG8034
3R	13042415	3R_13042415_SNP [dm3] 3R_17216693_SNP [dm6]	A	G	5.394e^-4	0.929	DOWNSTREAM CG31262 INTERGENIC
2R	9736472	2R_9736472_SNP [dm3] 2R_13848967_SNP [dm6]	T	C	5.396e^-4	0.929	SYNONYMOUS_CODING CG30484 UPSTREAM CG30485
2L	10090725	2L_10090725_SNP [dm3] 2L_10090725_SNP [dm6]	G	A	5.402e^-4	0.929	DOWNSTREAM CG13133 INTRON CG44153
3L	2299578	3L_2299578_SNP [dm3] 3L_2299578_SNP [dm6]	A	G	5.407e^-4	0.929	INTRON MsR2
2L	20777669	2L_20777669_SNP [dm3] 2L_20777669_SNP [dm6]	T	C	5.408e^-4	0.929	INTRON cad	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	6806397	3L_6806397_SNP [dm3] 3L_6813297_SNP [dm6]	G	T	5.408e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna
2L	14907685	2L_14907685_DEL [dm3] 2L_14907685_DEL [dm6]	CTAAACATTTAACTTC...	C	5.415e^-4	0.929	UTR_3_PRIME CG42313
3R	24245494	3R_24245494_SNP [dm3] 3R_28419772_SNP [dm6]	C	G	5.416e^-4	0.929	INTRON beat-VI
X	15739284	X_15739284_SNP [dm3] X_15845251_SNP [dm6]	T	C	5.417e^-4	0.929	INTRON CG8578	TF binding site BDTNP1_TFBS_dl
3R	20461052	3R_20461052_SNP [dm3] 3R_24635330_SNP [dm6]	C	A	5.420e^-4	0.929	UTR_3_PRIME puf UPSTREAM CG43222 DOWNSTREAM atl
3R	11094838	3R_11094838_SNP [dm3] 3R_15269116_SNP [dm6]	T	A	5.424e^-4	0.929	SYNONYMOUS_CODING Zip88E UPSTREAM CG14864	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	10293291	2R_10293291_SNP [dm3] 2R_14405786_SNP [dm6]	G	A	5.427e^-4	0.929	INTERGENIC
2R	8963703	2R_8963703_DEL [dm3] 2R_13076198_DEL [dm6]	TGGCGAATAAACA...	T	5.427e^-4	0.929	INTRON Drl-2
3R	11560961	3R_11560961_SNP [dm3] 3R_15735239_SNP [dm6]	C	T	5.432e^-4	0.929	INTERGENIC
2L	12756220	2L_12756220_SNP [dm3] 2L_12756220_SNP [dm6]	G	T	5.443e^-4	0.929	INTERGENIC

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.775e^-5)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1737 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	12088471	2L_12088471_SNP [dm3] 2L_12088471_SNP [dm6]	C	T	7.392e^-7	0.699	DOWNSTREAM CR44593 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
X	3320777	X_3320777_SNP [dm3] X_3426744_SNP [dm6]	C	G	1.184e^-6	0.699	DOWNSTREAM tRNA:CR32493 INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	4589702	2L_4589702_SNP [dm3] 2L_4589702_SNP [dm6]	G	A	1.373e^-6	0.699	INTRON dp
2L	14454945	2L_14454945_DEL [dm3] 2L_14454945_DEL [dm6]	AA	A	1.565e^-6	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2L	11774646	2L_11774646_SNP [dm3] 2L_11774646_SNP [dm6]	G	A	1.945e^-6	0.699	INTERGENIC
3L	2362793	3L_2362793_SNP [dm3] 3L_2362793_SNP [dm6]	C	A	2.638e^-6	0.699	DOWNSTREAM CG13801 INTERGENIC
2L	14454941	2L_14454941_SNP [dm3] 2L_14454941_SNP [dm6]	G	T	3.041e^-6	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3L	2362796	3L_2362796_SNP [dm3] 3L_2362796_SNP [dm6]	T	A	3.537e^-6	0.699	DOWNSTREAM CG13801 INTERGENIC
X	14797734	X_14797734_SNP [dm3] X_14903701_SNP [dm6]	G	A	3.656e^-6	0.699	INTRON Flo2 & 1 other
2L	14454955	2L_14454955_SNP [dm3] 2L_14454955_SNP [dm6]	A	T	3.729e^-6	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2L	9842951	2L_9842951_SNP [dm3] 2L_9842951_SNP [dm6]	C	T	7.774e^-6	1	INTRON nAChRalpha6
X	9463582	X_9463582_SNP [dm3] X_9569549_SNP [dm6]	G	C	7.876e^-6	1	SYNONYMOUS_CODING Cubn	TF binding site mE1_TFBS_chinmo
3R	14146261	3R_14146261_SNP [dm3] 3R_18320539_SNP [dm6]	C	T	8.035e^-6	1	INTRON CG31235
X	10814748	X_10814748_SNP [dm3] X_10920715_SNP [dm6]	T	C	8.824e^-6	1	UTR_3_PRIME CG43901	TF binding site BDTNP1_TFBS_dl
3R	10034648	3R_10034648_SNP [dm3] 3R_14208926_SNP [dm6]	C	T	8.990e^-6	1	INTRON Dop1R1
3R	2174486	3R_2174486_SNP [dm3] 3R_6348764_SNP [dm6]	C	T	9.412e^-6	1	UPSTREAM Hr83 INTERGENIC
2L	14606006	2L_14606006_SNP [dm3] 2L_14606006_SNP [dm6]	C	A	1.150e^-5	1	INTRON osp
3L	2529215	3L_2529215_SNP [dm3] 3L_2529215_SNP [dm6]	G	A	1.269e^-5	1	INTRON Spn	TF binding site mE1_TFBS_HSA
3L	19171274	3L_19171274_INS [dm3] 3L_19178174_INS [dm6]	C	CC	1.271e^-5	1	INTRON fz2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	11634069	3R_11634069_SNP [dm3] 3R_15808347_SNP [dm6]	A	G	1.338e^-5	1	INTRON alpha-Man-IIb
2L	14605729	2L_14605729_SNP [dm3] 2L_14605729_SNP [dm6]	A	G	1.505e^-5	1	INTRON osp
3R	19011785	3R_19011785_SNP [dm3] 3R_23186063_SNP [dm6]	T	A	1.506e^-5	1	UTR_3_PRIME cnc DOWNSTREAM cnc & 1 other
3L	12429281	3L_12429281_SNP [dm3] 3L_12436181_SNP [dm6]	A	T	1.602e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	17949245	3R_17949245_INS [dm3] 3R_22123523_INS [dm6]	T	TTCT	1.644e^-5	1	INTRON CG42390
3L	2529145	3L_2529145_SNP [dm3] 3L_2529145_SNP [dm6]	C	T	1.790e^-5	1	INTRON Spn
2L	1445097	2L_1445097_SNP [dm3] 2L_1445097_SNP [dm6]	T	C	1.809e^-5	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	6034988	3R_6034988_SNP [dm3] 3R_10209266_SNP [dm6]	G	A	1.899e^-5	1	INTRON Syn & 1 other
3L	12429280	3L_12429280_SNP [dm3] 3L_12436180_SNP [dm6]	A	C	1.908e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	14595117	2L_14595117_SNP [dm3] 2L_14595117_SNP [dm6]	T	C	1.908e^-5	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24573844	3R_24573844_SNP [dm3] 3R_28748122_SNP [dm6]	A	G	1.951e^-5	1	DOWNSTREAM CG10000 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12441004	3L_12441004_SNP [dm3] 3L_12447904_SNP [dm6]	A	G	2.188e^-5	1	INTERGENIC
2R	17140024	2R_17140024_SNP [dm3] 2R_21252519_SNP [dm6]	G	T	2.226e^-5	1	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	14473529	3R_14473529_SNP [dm3] 3R_18647807_SNP [dm6]	T	A	2.262e^-5	1	NON_SYNONYMOUS_CODING qin	TF binding site mE1_TFBS_sens
3L	12640038	3L_12640038_SNP [dm3] 3L_12646938_SNP [dm6]	C	G	2.354e^-5	1	EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2R	19527465	2R_19527465_SNP [dm3] 2R_23639942_SNP [dm6]	G	A	2.368e^-5	1	UPSTREAM CR45153 INTRON retn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6034796	3R_6034796_SNP [dm3] 3R_10209074_SNP [dm6]	C	T	2.426e^-5	1	INTRON Syn & 1 other
2L	1432126	2L_1432126_SNP [dm3] 2L_1432126_SNP [dm6]	T	A	2.557e^-5	1	UPSTREAM snRNA:U3:22A INTERGENIC	TF binding site mE1_TFBS_cad
3R	23794728	3R_23794728_SNP [dm3] 3R_27969006_SNP [dm6]	T	C	2.608e^-5	1	SYNONYMOUS_CODING betaTub97EF	TF binding site mE1_TFBS_cad
2L	6844325	2L_6844325_SNP [dm3] 2L_6844325_SNP [dm6]	A	G	2.643e^-5	1	INTERGENIC
3R	10731268	3R_10731268_SNP [dm3] 3R_14905546_SNP [dm6]	C	G	2.676e^-5	1	INTERGENIC
3R	18782269	3R_18782269_SNP [dm3] 3R_22956547_SNP [dm6]	T	C	2.950e^-5	1	INTRON klg
3L	15723370	3L_15723370_SNP [dm3] 3L_15730270_SNP [dm6]	G	A	2.994e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	17723076	3R_17723076_SNP [dm3] 3R_21897354_SNP [dm6]	A	G	3.004e^-5	1	INTRON CG6678
3R	17949272	3R_17949272_SNP [dm3] 3R_22123550_SNP [dm6]	A	T	3.086e^-5	1	INTRON CG42390
3L	10387054	3L_10387054_SNP [dm3] 3L_10393954_SNP [dm6]	T	C	3.086e^-5	1	INTERGENIC
X	16188354	X_16188354_SNP [dm3] X_16294321_SNP [dm6]	A	G	3.122e^-5	1	SPLICE_SITE_REGION CG9911 DOWNSTREAM caz INTRON CG9911
2L	1444778	2L_1444778_SNP [dm3] 2L_1444778_SNP [dm6]	G	T	3.195e^-5	1	DOWNSTREAM CG43402 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7766763	2L_7766763_SNP [dm3] 2L_7766763_SNP [dm6]	G	A	3.248e^-5	1	UPSTREAM CG7191 DOWNSTREAM CG7196 INTERGENIC
3L	16545311	3L_16545311_SNP [dm3] 3L_16552211_SNP [dm6]	T	C	3.368e^-5	1	INTERGENIC
3L	12429123	3L_12429123_SNP [dm3] 3L_12436023_SNP [dm6]	A	G	3.383e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	15713923	3L_15713923_SNP [dm3] 3L_15720823_SNP [dm6]	T	C	3.439e^-5	1	DOWNSTREAM CG42570 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	8440660	3L_8440660_SNP [dm3] 3L_8447560_SNP [dm6]	G	A	3.461e^-5	1	INTRON CG6983
2L	12088430	2L_12088430_SNP [dm3] 2L_12088430_SNP [dm6]	C	T	3.520e^-5	1	DOWNSTREAM CR44593 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8833986	3L_8833986_SNP [dm3] 3L_8840886_SNP [dm6]	G	T	3.530e^-5	1	INTRON dally	TF binding site mE1_TFBS_HSA
3R	17949259	3R_17949259_SNP [dm3] 3R_22123537_SNP [dm6]	A	T	3.713e^-5	1	INTRON CG42390
X	2347866	X_2347866_SNP [dm3] X_2453833_SNP [dm6]	T	G	3.764e^-5	1	INTRON boi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14595511	2L_14595511_SNP [dm3] 2L_14595511_SNP [dm6]	A	G	3.906e^-5	1	INTERGENIC
2L	16872003	2L_16872003_SNP [dm3] 2L_16872003_SNP [dm6]	C	G	3.912e^-5	1	INTRON CR31781
2L	10205365	2L_10205365_SNP [dm3] 2L_10205365_SNP [dm6]	A	T	3.935e^-5	1	UTR_3_PRIME CG5734	TF binding site mE1_TFBS_cad
3L	5141468	3L_5141468_SNP [dm3] 3L_5148368_SNP [dm6]	C	T	4.107e^-5	1	SYNONYMOUS_CODING Aats-ala-m	TF binding site mE1_TFBS_chinmo
3L	13970341	3L_13970341_SNP [dm3] 3L_13977241_SNP [dm6]	C	T	4.145e^-5	1	SYNONYMOUS_CODING Hsc70-1 DOWNSTREAM CG17364	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	10033565	2L_10033565_SNP [dm3] 2L_10033565_SNP [dm6]	G	A	4.362e^-5	1	INTRON obst-B
3L	3684231	3L_3684231_SNP [dm3] 3L_3684231_SNP [dm6]	C	A	4.371e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12766285	2R_12766285_SNP [dm3] 2R_16878780_SNP [dm6]	T	A	4.403e^-5	1	INTRON CG8910
3R	17949288	3R_17949288_SNP [dm3] 3R_22123566_SNP [dm6]	C	T	4.428e^-5	1	INTRON CG42390
2R	14048104	2R_14048104_SNP [dm3] 2R_18160599_SNP [dm6]	G	A	4.503e^-5	1	UPSTREAM CG10915 DOWNSTREAM CG10914 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
X	8034308	X_8034308_SNP [dm3] X_8140275_SNP [dm6]	T	C	4.586e^-5	1	SYNONYMOUS_CODING Smox	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	12034055	2R_12034055_SNP [dm3] 2R_16146550_SNP [dm6]	G	A	4.729e^-5	1	SYNONYMOUS_CODING Ext2 DOWNSTREAM Aats-cys
3L	19180157	3L_19180157_SNP [dm3] 3L_19187057_SNP [dm6]	A	T	4.875e^-5	1	INTRON fz2
X	3798177	X_3798177_SNP [dm3] X_3904144_SNP [dm6]	G	C	4.880e^-5	1	NON_SYNONYMOUS_CODING CG42541
X	18388007	X_18388007_SNP [dm3] X_18493974_SNP [dm6]	T	C	4.932e^-5	1	NON_SYNONYMOUS_CODING CG15043 UPSTREAM CR45627
3L	18677341	3L_18677341_SNP [dm3] 3L_18684241_SNP [dm6]	T	G	5.027e^-5	1	UPSTREAM Chmp1 DOWNSTREAM Cyp12c1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	2528080	3L_2528080_SNP [dm3] 3L_2528080_SNP [dm6]	G	A	5.051e^-5	1	INTRON Spn
3L	2757914	3L_2757914_SNP [dm3] 3L_2757914_SNP [dm6]	T	A	5.055e^-5	1	INTRON Mrtf	TF binding site BDTNP1_TFBS_twi
3L	16722891	3L_16722891_SNP [dm3] 3L_16729791_SNP [dm6]	C	T	5.103e^-5	1	INTRON Dbp73D	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18177874	3R_18177874_SNP [dm3] 3R_22352152_SNP [dm6]	C	A	5.160e^-5	1	UPSTREAM rdhB INTRON rdhB
3R	2136550	3R_2136550_SNP [dm3] 3R_6310828_SNP [dm6]	G	A	5.223e^-5	1	NON_SYNONYMOUS_CODING CG31560 UPSTREAM Osi17	TF binding site mE1_TFBS_HSA
X	15416998	X_15416998_SNP [dm3] X_15522965_SNP [dm6]	A	T	5.333e^-5	1	UPSTREAM Ac13E INTRON Ac13E
2R	12607418	2R_12607418_SNP [dm3] 2R_16719913_SNP [dm6]	A	T	5.529e^-5	1	INTRON CG30463
3L	2529228	3L_2529228_SNP [dm3] 3L_2529228_SNP [dm6]	A	G	5.616e^-5	1	INTRON Spn	TF binding site mE1_TFBS_HSA
X	14169111	X_14169111_SNP [dm3] X_14275078_SNP [dm6]	T	A	5.646e^-5	1	INTRON na
3R	10731267	3R_10731267_SNP [dm3] 3R_14905545_SNP [dm6]	C	T	5.651e^-5	1	INTERGENIC
3R	11297056	3R_11297056_SNP [dm3] 3R_15471334_SNP [dm6]	C	T	5.710e^-5	1	INTRON AdamTS-A
2L	9030268	2L_9030268_SNP [dm3] 2L_9030268_SNP [dm6]	T	A	5.715e^-5	1	INTRON CG9582 & 1 other
3R	20334502	3R_20334502_SNP [dm3] 3R_24508780_SNP [dm6]	A	C	5.722e^-5	1	DOWNSTREAM nAChRbeta2 INTERGENIC
3R	4048038	3R_4048038_SNP [dm3] 3R_8222316_SNP [dm6]	A	G	5.805e^-5	1	DOWNSTREAM CG18249 INTERGENIC
2R	837772	2R_837772_SNP [dm3] 2R_4950267_SNP [dm6]	T	G	5.912e^-5	1	INTRON Ir41a
3R	13809375	3R_13809375_SNP [dm3] 3R_17983653_SNP [dm6]	G	T	5.989e^-5	1	INTRON cpo
2R	951364	2R_951364_SNP [dm3] 2R_5063859_SNP [dm6]	A	G	6.079e^-5	1	INTERGENIC
3R	504594	3R_504594_SNP [dm3] 3R_4678872_SNP [dm6]	C	T	6.094e^-5	1	INTRON CG43427	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	22901386	3L_22901386_SNP [dm3] 3L_22908286_SNP [dm6]	A	C	6.170e^-5	1	INTERGENIC
2L	14354182	2L_14354182_SNP [dm3] 2L_14354182_SNP [dm6]	C	T	6.472e^-5	1	SYNONYMOUS_CODING l_2_34Fd UPSTREAM Rab14	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	8810411	X_8810411_SNP [dm3] X_8916378_SNP [dm6]	T	A	6.745e^-5	1	INTRON rdgA
X	7746109	X_7746109_SNP [dm3] X_7852076_SNP [dm6]	G	A	6.844e^-5	1	DOWNSTREAM CG10920 INTERGENIC
2L	15284156	2L_15284156_SNP [dm3] 2L_15284156_SNP [dm6]	A	G	6.846e^-5	1	UPSTREAM CG15263 INTERGENIC
3R	6034999	3R_6034999_SNP [dm3] 3R_10209277_SNP [dm6]	T	C	6.847e^-5	1	INTRON Syn & 1 other
2R	11286523	2R_11286523_SNP [dm3] 2R_15399018_SNP [dm6]	A	C	6.868e^-5	1	INTERGENIC
X	3320827	X_3320827_SNP [dm3] X_3426794_SNP [dm6]	A	T	6.988e^-5	1	DOWNSTREAM tRNA:CR32493 INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	14680184	3L_14680184_SNP [dm3] 3L_14687084_SNP [dm6]	A	T	6.999e^-5	1	INTRON ome
2L	17042976	2L_17042976_SNP [dm3] 2L_17042976_SNP [dm6]	C	G	7.019e^-5	1	INTRON CR43802 EXON CR43802
2R	13055838	2R_13055838_SNP [dm3] 2R_17168333_SNP [dm6]	C	T	7.082e^-5	1	INTERGENIC
3R	22005029	3R_22005029_INS [dm3] 3R_26179307_INS [dm6]	A	AA	7.205e^-5	1	INTRON CG31323
2R	14459867	2R_14459867_INS [dm3] 2R_18572362_INS [dm6]	T	TACAACTTGCGGCTT...	7.424e^-5	1	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1088367	3L_1088367_SNP [dm3] 3L_1088367_SNP [dm6]	C	T	7.496e^-5	1	INTRON bab1
3R	24366421	3R_24366421_SNP [dm3] 3R_28540699_SNP [dm6]	A	G	7.578e^-5	1	UPSTREAM Ppn INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2529194	3L_2529194_SNP [dm3] 3L_2529194_SNP [dm6]	T	C	7.688e^-5	1	INTRON Spn	TF binding site mE1_TFBS_HSA
3R	20334518	3R_20334518_SNP [dm3] 3R_24508796_SNP [dm6]	C	A	7.707e^-5	1	DOWNSTREAM nAChRbeta2 INTERGENIC
3R	3723276	3R_3723276_SNP [dm3] 3R_7897554_SNP [dm6]	T	C	7.722e^-5	1	INTRON mRpS9 & 1 other
2L	12088449	2L_12088449_SNP [dm3] 2L_12088449_SNP [dm6]	T	G	7.826e^-5	1	DOWNSTREAM CR44593 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2L	16466405	2L_16466405_SNP [dm3] 2L_16466405_SNP [dm6]	C	A	7.894e^-5	1	DOWNSTREAM dac INTERGENIC	regulatory region REDfly_CRMs
2R	2636488	2R_2636488_SNP [dm3] 2R_6748983_SNP [dm6]	A	T	7.973e^-5	1	UPSTREAM Eb1 DOWNSTREAM CG3267 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h
3L	18911883	3L_18911883_SNP [dm3] 3L_18918783_SNP [dm6]	C	T	8.018e^-5	1	SYNONYMOUS_CODING CG6839 DOWNSTREAM CG18223	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13993957	3L_13993957_SNP [dm3] 3L_14000857_SNP [dm6]	G	A	8.062e^-5	1	SYNONYMOUS_CODING CG8783	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14048141	2R_14048141_SNP [dm3] 2R_18160636_SNP [dm6]	C	T	8.111e^-5	1	UPSTREAM CG10915 DOWNSTREAM CG10914 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	13219275	2R_13219275_SNP [dm3] 2R_17331770_SNP [dm6]	T	A	8.274e^-5	1	INTRON mbl	TF binding site BDTNP1_TFBS_prd
3L	21603814	3L_21603814_DEL [dm3] 3L_21610714_DEL [dm6]	GAG	G	8.294e^-5	1	INTRON TfAP-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18681169	3R_18681169_SNP [dm3] 3R_22855447_SNP [dm6]	T	A	8.343e^-5	1	INTERGENIC
2L	9029758	2L_9029758_SNP [dm3] 2L_9029758_SNP [dm6]	G	A	8.492e^-5	1	INTRON CG9582 & 1 other
2R	10563294	2R_10563294_SNP [dm3] 2R_14675789_SNP [dm6]	G	A	8.513e^-5	1	NON_SYNONYMOUS_CODING CG30480 UTR_5_PRIME CG30479 UPSTREAM CG30479 INTRON mspo	TF binding site mE1_TFBS_sens
2L	14606306	2L_14606306_SNP [dm3] 2L_14606306_SNP [dm6]	A	C	8.579e^-5	1	INTRON osp
3L	2529140	3L_2529140_SNP [dm3] 3L_2529140_SNP [dm6]	A	T	8.649e^-5	1	INTRON Spn
3L	17268129	3L_17268129_SNP [dm3] 3L_17275029_SNP [dm6]	A	G	8.733e^-5	1	DOWNSTREAM CR45436 INTERGENIC
3R	2228909	3R_2228909_SNP [dm3] 3R_6403187_SNP [dm6]	A	G	8.842e^-5	1	INTRON Dmtn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14048370	2R_14048370_SNP [dm3] 2R_18160865_SNP [dm6]	T	C	8.866e^-5	1	UTR_5_PRIME CG10915 DOWNSTREAM CG10914	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	16722875	3L_16722875_SNP [dm3] 3L_16729775_SNP [dm6]	G	T	8.870e^-5	1	SPLICE_SITE_REGION Dbp73D SYNONYMOUS_CODING Dbp73D	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	17723077	3R_17723077_SNP [dm3] 3R_21897355_SNP [dm6]	G	A	8.906e^-5	1	INTRON CG6678
3L	2528059	3L_2528059_SNP [dm3] 3L_2528059_SNP [dm6]	A	G	9.023e^-5	1	INTRON Spn
2R	16176361	2R_16176361_SNP [dm3] 2R_20288856_SNP [dm6]	T	C	9.078e^-5	1	UTR_3_PRIME Cpr56F UPSTREAM CkIIbeta2 DOWNSTREAM CG34199	TF binding site mE1_TFBS_chinmo
2L	14602016	2L_14602016_SNP [dm3] 2L_14602016_SNP [dm6]	G	T	9.086e^-5	1	INTRON osp
3L	8208991	3L_8208991_SNP [dm3] 3L_8215891_SNP [dm6]	A	G	9.132e^-5	1	UTR_3_PRIME CG8012
3L	2529200	3L_2529200_SNP [dm3] 3L_2529200_SNP [dm6]	G	T	9.140e^-5	1	INTRON Spn	TF binding site mE1_TFBS_HSA
2L	20670436	2L_20670436_SNP [dm3] 2L_20670436_SNP [dm6]	G	A	9.264e^-5	1	INTRON CG31678
3L	12429198	3L_12429198_SNP [dm3] 3L_12436098_SNP [dm6]	T	C	9.348e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	14595796	2L_14595796_SNP [dm3] 2L_14595796_SNP [dm6]	A	G	9.444e^-5	1	INTERGENIC
3L	18653057	3L_18653057_SNP [dm3] 3L_18659957_SNP [dm6]	C	T	9.468e^-5	1	INTRON MYPT-75D
3R	10442039	3R_10442039_SNP [dm3] 3R_14616317_SNP [dm6]	A	G	9.480e^-5	1	INTRON CG14853
2R	11948886	2R_11948886_SNP [dm3] 2R_16061381_SNP [dm6]	T	C	9.486e^-5	1	DOWNSTREAM CG8405 INTERGENIC
3R	13913033	3R_13913033_SNP [dm3] 3R_18087311_SNP [dm6]	C	A	9.530e^-5	1	INTERGENIC
X	16188366	X_16188366_SNP [dm3] X_16294333_SNP [dm6]	C	A	9.610e^-5	1	DOWNSTREAM caz INTRON CG9911
2R	839876	2R_839876_SNP [dm3] 2R_4952371_SNP [dm6]	G	A	9.675e^-5	1	INTRON Ir41a	transposable element FlyBase
3L	13746322	3L_13746322_SNP [dm3] 3L_13753222_SNP [dm6]	A	G	9.745e^-5	1	INTRON bru-3
3R	15089738	3R_15089738_SNP [dm3] 3R_19264016_SNP [dm6]	G	T	9.894e^-5	1	INTERGENIC
3R	24934834	3R_24934834_SNP [dm3] 3R_29109112_SNP [dm6]	A	T	9.930e^-5	1	UTR_3_PRIME alpha-Man-Ib DOWNSTREAM CG11873
3L	3643690	3L_3643690_DEL [dm3] 3L_3643690_DEL [dm6]	AT	A	9.932e^-5	1	INTRON dar1
3L	3278229	3L_3278229_SNP [dm3] 3L_3278229_SNP [dm6]	G	A	1.006e^-4	1	INTERGENIC
2R	10034531	2R_10034531_DEL [dm3] 2R_14147026_DEL [dm6]	TT	T	1.007e^-4	1	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	17042977	2L_17042977_SNP [dm3] 2L_17042977_SNP [dm6]	T	A	1.025e^-4	1	INTRON CR43802 EXON CR43802
3L	13974154	3L_13974154_SNP [dm3] 3L_13981054_SNP [dm6]	G	T	1.030e^-4	1	DOWNSTREAM CG17364 INTRON CG17364
3L	19185382	3L_19185382_SNP [dm3] 3L_19192282_SNP [dm6]	A	T	1.032e^-4	1	INTRON fz2
3L	6956147	3L_6956147_SNP [dm3] 3L_6963047_SNP [dm6]	G	T	1.056e^-4	1	INTRON sgl	TF binding site BDTNP1_TFBS_dl
3R	11264361	3R_11264361_SNP [dm3] 3R_15438639_SNP [dm6]	T	A	1.059e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	14352430	3L_14352430_SNP [dm3] 3L_14359330_SNP [dm6]	G	T	1.061e^-4	1	INTRON fz	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	3022471	3L_3022471_SNP [dm3] 3L_3022471_SNP [dm6]	T	C	1.072e^-4	1	INTERGENIC
2L	14604928	2L_14604928_SNP [dm3] 2L_14604928_SNP [dm6]	T	C	1.072e^-4	1	SYNONYMOUS_CODING osp	TF binding site mE1_TFBS_chinmo
2L	17393039	2L_17393039_SNP [dm3] 2L_17393039_SNP [dm6]	G	T	1.074e^-4	1	INTRON CLIP-190
X	8809979	X_8809979_SNP [dm3] X_8915946_SNP [dm6]	C	G	1.080e^-4	1	INTRON rdgA
3L	11184232	3L_11184232_SNP [dm3] 3L_11191132_SNP [dm6]	T	C	1.084e^-4	1	INTRON GlcAT-P
3R	12013572	3R_12013572_SNP [dm3] 3R_16187850_SNP [dm6]	C	T	1.089e^-4	1	UPSTREAM Bin1 INTRON sra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	12607354	2R_12607354_SNP [dm3] 2R_16719849_SNP [dm6]	C	A	1.091e^-4	1	INTRON CG30463
3R	26335000	3R_26335000_SNP [dm3] 3R_30509278_SNP [dm6]	A	T	1.093e^-4	1	SYNONYMOUS_CODING CG34041 DOWNSTREAM CG34041 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	6583496	3L_6583496_SNP [dm3] 3L_6590396_SNP [dm6]	T	C	1.102e^-4	1	UPSTREAM jv INTRON CG18769
3R	6034785	3R_6034785_SNP [dm3] 3R_10209063_SNP [dm6]	C	A	1.103e^-4	1	INTRON Syn & 1 other
2L	10074325	2L_10074325_SNP [dm3] 2L_10074325_SNP [dm6]	A	G	1.111e^-4	1	INTRON CG44153
3L	3595350	3L_3595350_SNP [dm3] 3L_3595350_SNP [dm6]	A	G	1.119e^-4	1	INTRON Eip63E
3L	14579388	3L_14579388_SNP [dm3] 3L_14586288_SNP [dm6]	A	G	1.121e^-4	1	INTRON HGTX	TF binding site mE1_TFBS_cad
2L	14611728	2L_14611728_DEL [dm3] 2L_14611728_DEL [dm6]	AA	A	1.131e^-4	1	INTRON osp	regulatory region REDfly_CRMs
2L	5384303	2L_5384303_SNP [dm3] 2L_5384303_SNP [dm6]	A	G	1.133e^-4	1	INTERGENIC
X	14169386	X_14169386_SNP [dm3] X_14275353_SNP [dm6]	T	C	1.137e^-4	1	SYNONYMOUS_CODING na
2R	4484333	2R_4484333_SNP [dm3] 2R_8596828_SNP [dm6]	A	T	1.148e^-4	1	DOWNSTREAM CG8735 INTERGENIC
X	15416974	X_15416974_SNP [dm3] X_15522941_SNP [dm6]	A	T	1.148e^-4	1	UPSTREAM Ac13E INTRON Ac13E
3R	17522688	3R_17522688_SNP [dm3] 3R_21696966_SNP [dm6]	G	A	1.150e^-4	1	INTRON CG31176
2L	9018344	2L_9018344_SNP [dm3] 2L_9018344_SNP [dm6]	C	T	1.152e^-4	1	INTERGENIC
2R	17530503	2R_17530503_SNP [dm3] 2R_21642998_SNP [dm6]	C	G	1.154e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15139298	3L_15139298_SNP [dm3] 3L_15146198_SNP [dm6]	T	C	1.156e^-4	1	UTR_3_PRIME Pex3 UPSTREAM FucTA DOWNSTREAM Pex3
3L	2287575	3L_2287575_SNP [dm3] 3L_2287575_SNP [dm6]	A	T	1.162e^-4	1	INTRON MsR2
X	2329572	X_2329572_SNP [dm3] X_2435539_SNP [dm6]	A	G	1.163e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9033489	2L_9033489_DEL [dm3] 2L_9033489_DEL [dm6]	AC	A	1.188e^-4	1	INTERGENIC
3R	11265066	3R_11265066_SNP [dm3] 3R_15439344_SNP [dm6]	T	C	1.191e^-4	1	UPSTREAM Act88F INTERGENIC	regulatory region REDfly_CRMs
3R	11498606	3R_11498606_SNP [dm3] 3R_15672884_SNP [dm6]	A	G	1.195e^-4	1	INTRON pxb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_sens
2L	17155949	2L_17155949_SNP [dm3] 2L_17155949_SNP [dm6]	A	C	1.202e^-4	1	INTRON beat-IIIa & 1 other	TF binding site mE1_TFBS_inv
3R	13807237	3R_13807237_SNP [dm3] 3R_17981515_SNP [dm6]	T	A	1.222e^-4	1	INTRON cpo
2L	9027985	2L_9027985_SNP [dm3] 2L_9027985_SNP [dm6]	G	T	1.239e^-4	1	INTRON CG9582 & 1 other
2L	17393100	2L_17393100_SNP [dm3] 2L_17393100_SNP [dm6]	T	G	1.239e^-4	1	INTRON CLIP-190
2R	14490527	2R_14490527_SNP [dm3] 2R_18603022_SNP [dm6]	C	T	1.254e^-4	1	INTRON GEFmeso
3R	13345288	3R_13345288_SNP [dm3] 3R_17519566_SNP [dm6]	G	A	1.286e^-4	1	UPSTREAM CR44349 INTERGENIC
X	2408446	X_2408446_SNP [dm3] X_2514413_SNP [dm6]	T	C	1.288e^-4	1	INTRON trol
2L	14471870	2L_14471870_SNP [dm3] 2L_14471870_SNP [dm6]	C	T	1.296e^-4	1	INTERGENIC
2R	6750769	2R_6750769_SNP [dm3] 2R_10863264_SNP [dm6]	A	G	1.307e^-4	1	INTRON CG30015
3L	19182840	3L_19182840_SNP [dm3] 3L_19189740_SNP [dm6]	A	G	1.314e^-4	1	INTRON fz2
2L	14595774	2L_14595774_SNP [dm3] 2L_14595774_SNP [dm6]	A	T	1.314e^-4	1	INTERGENIC
2L	1432486	2L_1432486_SNP [dm3] 2L_1432486_SNP [dm6]	G	A	1.317e^-4	1	UPSTREAM snRNA:U3:22A INTERGENIC
3R	6034732	3R_6034732_SNP [dm3] 3R_10209010_SNP [dm6]	C	T	1.332e^-4	1	INTRON Syn & 1 other
3L	17720959	3L_17720959_SNP [dm3] 3L_17727859_SNP [dm6]	A	G	1.332e^-4	1	SYNONYMOUS_CODING CG6052 INTRON Ccn	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	16188368	X_16188368_SNP [dm3] X_16294335_SNP [dm6]	A	T	1.339e^-4	1	DOWNSTREAM caz INTRON CG9911
2R	13134494	2R_13134494_SNP [dm3] 2R_17246989_SNP [dm6]	C	T	1.346e^-4	1	SYNONYMOUS_CODING CG12699 UPSTREAM CG18469 INTRON mbl
X	10005753	X_10005753_SNP [dm3] X_10111720_SNP [dm6]	C	T	1.347e^-4	1	INTRON RhoU
X	14169112	X_14169112_SNP [dm3] X_14275079_SNP [dm6]	T	C	1.353e^-4	1	INTRON na
2R	6820028	2R_6820028_SNP [dm3] 2R_10932523_SNP [dm6]	T	G	1.358e^-4	1	INTERGENIC
2L	1213298	2L_1213298_SNP [dm3] 2L_1213298_SNP [dm6]	A	G	1.370e^-4	1	INTERGENIC
2L	14602232	2L_14602232_SNP [dm3] 2L_14602232_SNP [dm6]	A	G	1.371e^-4	1	SYNONYMOUS_CODING osp
3L	10694897	3L_10694897_SNP [dm3] 3L_10701797_SNP [dm6]	T	A	1.371e^-4	1	INTERGENIC
3L	12429187	3L_12429187_SNP [dm3] 3L_12436087_SNP [dm6]	G	A	1.378e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	1444875	2L_1444875_SNP [dm3] 2L_1444875_SNP [dm6]	A	T	1.382e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3418795	3R_3418795_SNP [dm3] 3R_7593073_SNP [dm6]	T	G	1.386e^-4	1	INTRON CG34127
2L	14579091	2L_14579091_SNP [dm3] 2L_14579091_SNP [dm6]	G	A	1.387e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12303907	X_12303907_SNP [dm3] X_12409874_SNP [dm6]	T	A	1.394e^-4	1	DOWNSTREAM CG2574 INTERGENIC
3R	24928898	3R_24928898_SNP [dm3] 3R_29103176_SNP [dm6]	A	G	1.398e^-4	1	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16482398	3R_16482398_SNP [dm3] 3R_20656676_SNP [dm6]	G	T	1.408e^-4	1	UTR_5_PRIME Nep4 INTRON Nep4	TF binding site mE1_TFBS_chinmo
2L	5023105	2L_5023105_SNP [dm3] 2L_5023105_SNP [dm6]	T	G	1.416e^-4	1	INTRON vkg
3R	11264386	3R_11264386_SNP [dm3] 3R_15438664_SNP [dm6]	G	A	1.428e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	11053834	3L_11053834_SNP [dm3] 3L_11060734_SNP [dm6]	A	G	1.429e^-4	1	UPSTREAM Blos2 INTRON CG6321
3L	9557671	3L_9557671_SNP [dm3] 3L_9564571_SNP [dm6]	T	G	1.434e^-4	1	INTRON CG42673
2R	11021497	2R_11021497_SNP [dm3] 2R_15133992_SNP [dm6]	T	A	1.435e^-4	1	INTRON chn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	8147734	3L_8147734_SNP [dm3] 3L_8154634_SNP [dm6]	T	A	1.443e^-4	1	DOWNSTREAM CG42445 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	10875676	2R_10875676_SNP [dm3] 2R_14988171_SNP [dm6]	G	A	1.450e^-4	1	SYNONYMOUS_CODING CG7639 INTRON pcs	TF binding site BDTNP1_TFBS_twi
X	10280178	X_10280178_SNP [dm3] X_10386145_SNP [dm6]	A	G	1.450e^-4	1	UTR_5_PRIME flw UPSTREAM Psf3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14569275	2L_14569275_SNP [dm3] 2L_14569275_SNP [dm6]	A	G	1.452e^-4	1	INTERGENIC
2R	19334046	2R_19334046_SNP [dm3] 2R_23446523_SNP [dm6]	A	T	1.455e^-4	1	INTRON CG43795
3R	17949334	3R_17949334_DEL [dm3] 3R_22123612_DEL [dm6]	TT	T	1.455e^-4	1	INTRON CG42390
2L	14593964	2L_14593964_SNP [dm3] 2L_14593964_SNP [dm6]	A	T	1.456e^-4	1	INTERGENIC
3L	3278123	3L_3278123_SNP [dm3] 3L_3278123_SNP [dm6]	C	A	1.468e^-4	1	INTERGENIC
3L	2529239	3L_2529239_SNP [dm3] 3L_2529239_SNP [dm6]	C	T	1.470e^-4	1	INTRON Spn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2501159	X_2501159_SNP [dm3] X_2607126_SNP [dm6]	G	A	1.484e^-4	1	SYNONYMOUS_CODING Bzd DOWNSTREAM Zw10	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	8657686	2L_8657686_SNP [dm3] 2L_8657686_SNP [dm6]	G	A	1.485e^-4	1	INTRON Sema-1a
3R	22146926	3R_22146926_SNP [dm3] 3R_26321204_SNP [dm6]	T	A	1.501e^-4	1	INTRON CG33970	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	1442696	2L_1442696_SNP [dm3] 2L_1442696_SNP [dm6]	C	G	1.503e^-4	1	UTR_5_PRIME CG43402 UPSTREAM CG43402
3L	11586769	3L_11586769_SNP [dm3] 3L_11593669_SNP [dm6]	G	T	1.504e^-4	1	UPSTREAM CR45442 & 1 other EXON CR45671 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	13974155	3L_13974155_SNP [dm3] 3L_13981055_SNP [dm6]	C	G	1.545e^-4	1	DOWNSTREAM CG17364 INTRON CG17364
2L	7726744	2L_7726744_SNP [dm3] 2L_7726744_SNP [dm6]	G	A	1.546e^-4	1	UPSTREAM CG13795 DOWNSTREAM CG13796 INTERGENIC
3R	11419116	3R_11419116_SNP [dm3] 3R_15593394_SNP [dm6]	C	T	1.567e^-4	1	INTERGENIC
2L	12688802	2L_12688802_DEL [dm3] 2L_12688802_DEL [dm6]	AGGACATACA	A	1.571e^-4	1	INTERGENIC
3R	18781909	3R_18781909_SNP [dm3] 3R_22956187_SNP [dm6]	G	A	1.571e^-4	1	INTRON klg
2R	10037119	2R_10037119_SNP [dm3] 2R_14149614_SNP [dm6]	T	C	1.579e^-4	1	NON_SYNONYMOUS_CODING Rcd1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6198539	2L_6198539_SNP [dm3] 2L_6198539_SNP [dm6]	T	A	1.582e^-4	1	INTRON CG34380
3R	13345180	3R_13345180_SNP [dm3] 3R_17519458_SNP [dm6]	T	C	1.588e^-4	1	UPSTREAM CR44349 INTERGENIC
3R	18832015	3R_18832015_SNP [dm3] 3R_23006293_SNP [dm6]	A	T	1.595e^-4	1	INTRON CG34375
3L	15717750	3L_15717750_SNP [dm3] 3L_15724650_SNP [dm6]	C	T	1.606e^-4	1	INTRON comm
2L	11428399	2L_11428399_MNP [dm3] 2L_11428399_MNP [dm6]	CGT	TAG	1.610e^-4	1	INTERGENIC
3R	15784198	3R_15784198_DEL [dm3] 3R_19958476_DEL [dm6]	TT	T	1.610e^-4	1	INTRON Hs6st
2L	12163724	2L_12163724_SNP [dm3] 2L_12163724_SNP [dm6]	C	A	1.628e^-4	1	UPSTREAM ZnT33D INTRON CG31760
2L	20824968	2L_20824968_SNP [dm3] 2L_20824968_SNP [dm6]	G	C	1.641e^-4	1	UPSTREAM CG9331 INTRON CG9331	TF binding site mE1_TFBS_Trl
2L	13910977	2L_13910977_SNP [dm3] 2L_13910977_SNP [dm6]	T	C	1.642e^-4	1	SYNONYMOUS_CODING Ance-2	TF binding site mE1_TFBS_cad
2R	16254962	2R_16254962_SNP [dm3] 2R_20367457_SNP [dm6]	C	A	1.643e^-4	1	INTERGENIC
2L	13895935	2L_13895935_SNP [dm3] 2L_13895935_SNP [dm6]	T	C	1.651e^-4	1	SYNONYMOUS_CODING CenG1A	TF binding site mE1_TFBS_cad
2R	13991090	2R_13991090_SNP [dm3] 2R_18103585_SNP [dm6]	T	C	1.656e^-4	1	SYNONYMOUS_CODING CG5756 INTRON CG5756	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	6867886	2L_6867886_SNP [dm3] 2L_6867886_SNP [dm6]	A	T	1.664e^-4	1	INTRON Nha1
3L	22522241	3L_22522241_SNP [dm3] 3L_22529141_SNP [dm6]	T	C	1.665e^-4	1	INTERGENIC
2R	14333570	2R_14333570_SNP [dm3] 2R_18446065_SNP [dm6]	A	G	1.666e^-4	1	UPSTREAM CG5189 & 1 other DOWNSTREAM slim INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	14609693	2L_14609693_SNP [dm3] 2L_14609693_SNP [dm6]	G	C	1.670e^-4	1	INTRON osp
2L	14604985	2L_14604985_SNP [dm3] 2L_14604985_SNP [dm6]	A	G	1.680e^-4	1	SYNONYMOUS_CODING osp	TF binding site mE1_TFBS_chinmo
3L	3927253	3L_3927253_SNP [dm3] 3L_3927253_SNP [dm6]	A	G	1.684e^-4	1	INTRON Eip63F-1
3L	6956230	3L_6956230_SNP [dm3] 3L_6963130_SNP [dm6]	G	A	1.685e^-4	1	INTRON sgl	TF binding site BDTNP1_TFBS_dl
3R	17966261	3R_17966261_SNP [dm3] 3R_22140539_SNP [dm6]	T	A	1.697e^-4	1	INTRON SKIP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11944561	2L_11944561_SNP [dm3] 2L_11944561_SNP [dm6]	C	A	1.704e^-4	1	INTRON Cry
2L	14598831	2L_14598831_SNP [dm3] 2L_14598831_SNP [dm6]	G	A	1.713e^-4	1	UPSTREAM tRNA:P:35Ba & 1 other DOWNSTREAM osp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12886663	3L_12886663_SNP [dm3] 3L_12893563_SNP [dm6]	C	T	1.720e^-4	1	SYNONYMOUS_CODING CG14118	TF binding site mE1_TFBS_chinmo
2L	14340844	2L_14340844_INS [dm3] 2L_14340844_INS [dm6]	A	ACAAACAAA	1.726e^-4	1	DOWNSTREAM CG15286 INTRON CG33090
X	9539991	X_9539991_DEL [dm3] X_9645958_DEL [dm6]	GATT	CGG	1.735e^-4	1	UPSTREAM l_1_G0232 INTRON l_1_G0232	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15443422	2R_15443422_DEL [dm3] 2R_19555917_DEL [dm6]	TT	T	1.739e^-4	1	INTRON sm	TF binding site mE1_TFBS_inv
2R	13219236	2R_13219236_SNP [dm3] 2R_17331731_SNP [dm6]	G	C	1.740e^-4	1	INTRON mbl	TF binding site BDTNP1_TFBS_prd
3L	21902964	3L_21902964_SNP [dm3] 3L_21909864_SNP [dm6]	T	G	1.747e^-4	1	INTRON mub	TF binding site mE1_TFBS_HSA
3R	23201564	3R_23201564_SNP [dm3] 3R_27375842_SNP [dm6]	G	T	1.747e^-4	1	UTR_3_PRIME side
2L	9388323	2L_9388323_SNP [dm3] 2L_9388323_SNP [dm6]	G	A	1.762e^-4	1	INTRON Shawl & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2323129	3L_2323129_SNP [dm3] 3L_2323129_SNP [dm6]	C	A	1.771e^-4	1	INTRON MsR1
2L	17261411	2L_17261411_SNP [dm3] 2L_17261411_SNP [dm6]	G	T	1.789e^-4	1	UPSTREAM beat-IIIc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14400834	X_14400834_INS [dm3] X_14506801_INS [dm6]	A	ATGGCCA	1.789e^-4	1	INTERGENIC
3L	2529261	3L_2529261_SNP [dm3] 3L_2529261_SNP [dm6]	C	A	1.789e^-4	1	INTRON Spn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5017396	2L_5017396_SNP [dm3] 2L_5017396_SNP [dm6]	A	T	1.792e^-4	1	SYNONYMOUS_CODING vkg	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23647653	3R_23647653_SNP [dm3] 3R_27821931_SNP [dm6]	T	G	1.800e^-4	1	INTRON CG34353
3L	18719414	3L_18719414_SNP [dm3] 3L_18726314_SNP [dm6]	G	T	1.806e^-4	1	INTERGENIC
2L	14063758	2L_14063758_SNP [dm3] 2L_14063758_SNP [dm6]	A	T	1.813e^-4	1	INTRON nAChRalpha5
3R	11270162	3R_11270162_SNP [dm3] 3R_15444440_SNP [dm6]	G	A	1.818e^-4	1	SYNONYMOUS_CODING AdamTS-A	TF binding site mE1_TFBS_cad
3L	14352480	3L_14352480_SNP [dm3] 3L_14359380_SNP [dm6]	C	T	1.826e^-4	1	INTRON fz	TF binding site mE1_TFBS_HSA
2L	10207910	2L_10207910_SNP [dm3] 2L_10207910_SNP [dm6]	T	A	1.831e^-4	1	UPSTREAM CG5734 & 1 other INTRON CG5731
3L	19212516	3L_19212516_SNP [dm3] 3L_19219416_SNP [dm6]	T	A	1.836e^-4	1	INTRON fz2
3R	23225583	3R_23225583_SNP [dm3] 3R_27399861_SNP [dm6]	G	A	1.839e^-4	1	INTRON side	TF binding site mE1_TFBS_chinmo
X	11753772	X_11753772_SNP [dm3] X_11859739_SNP [dm6]	T	C	1.845e^-4	1	INTRON ATP7	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc
2L	9014482	2L_9014482_SNP [dm3] 2L_9014482_SNP [dm6]	T	C	1.845e^-4	1	UPSTREAM Rcd-1r DOWNSTREAM CG13102 INTERGENIC
2L	17334106	2L_17334106_SNP [dm3] 2L_17334106_SNP [dm6]	T	C	1.847e^-4	1	INTERGENIC
3L	12429662	3L_12429662_SNP [dm3] 3L_12436562_SNP [dm6]	C	A	1.850e^-4	1	INTERGENIC
2L	14454829	2L_14454829_SNP [dm3] 2L_14454829_SNP [dm6]	T	A	1.851e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2537982	3L_2537982_SNP [dm3] 3L_2537982_SNP [dm6]	A	T	1.852e^-4	1	INTRON Spn
3L	19180493	3L_19180493_SNP [dm3] 3L_19187393_SNP [dm6]	A	C	1.854e^-4	1	INTRON fz2
3R	18832113	3R_18832113_SNP [dm3] 3R_23006391_SNP [dm6]	C	T	1.866e^-4	1	INTRON CG34375
3R	24933598	3R_24933598_SNP [dm3] 3R_29107876_SNP [dm6]	A	G	1.872e^-4	1	UTR_3_PRIME CG11873
3R	11327661	3R_11327661_SNP [dm3] 3R_15501939_SNP [dm6]	C	T	1.881e^-4	1	INTERGENIC
2R	20315869	2R_20315869_SNP [dm3] 2R_24428346_SNP [dm6]	T	C	1.890e^-4	1	START_GAINED prom UTR_5_PRIME prom
3R	18669044	3R_18669044_SNP [dm3] 3R_22843322_SNP [dm6]	A	T	1.897e^-4	1	DOWNSTREAM CG4704 INTERGENIC
2R	13219254	2R_13219254_DEL [dm3] 2R_17331749_DEL [dm6]	ATTTGTTTTCTTACAGGG...	A	1.906e^-4	1	INTRON mbl	TF binding site BDTNP1_TFBS_prd
2R	13219290	2R_13219290_SNP [dm3] 2R_17331785_SNP [dm6]	G	A	1.906e^-4	1	INTRON mbl	TF binding site BDTNP1_TFBS_prd
3R	18151295	3R_18151295_SNP [dm3] 3R_22325573_SNP [dm6]	G	C	1.911e^-4	1	INTERGENIC
2L	1343934	2L_1343934_SNP [dm3] 2L_1343934_SNP [dm6]	C	T	1.929e^-4	1	SYNONYMOUS_CODING CG33922 UPSTREAM Cdlc2
3R	10030960	3R_10030960_DEL [dm3] 3R_14205238_DEL [dm6]	GCGG	G	1.951e^-4	1	INTRON Dop1R1
X	14797012	X_14797012_SNP [dm3] X_14902979_SNP [dm6]	T	C	1.959e^-4	1	INTRON Flo2 & 1 other
3R	11265094	3R_11265094_SNP [dm3] 3R_15439372_SNP [dm6]	T	A	1.963e^-4	1	UPSTREAM Act88F INTERGENIC	regulatory region REDfly_CRMs
X	8378510	X_8378510_SNP [dm3] X_8484477_SNP [dm6]	T	A	1.966e^-4	1	UPSTREAM CG33223 DOWNSTREAM otu EXON CR43834
3R	13345157	3R_13345157_SNP [dm3] 3R_17519435_SNP [dm6]	C	A	1.972e^-4	1	UPSTREAM CR44349 INTERGENIC
3L	17101896	3L_17101896_SNP [dm3] 3L_17108796_SNP [dm6]	G	C	1.973e^-4	1	INTRON Rbp6
3L	22329941	3L_22329941_SNP [dm3] 3L_22336841_SNP [dm6]	T	C	1.974e^-4	1	INTRON Ten-m
2L	14462244	2L_14462244_SNP [dm3] 2L_14462244_SNP [dm6]	T	A	1.975e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	2229285	3R_2229285_SNP [dm3] 3R_6403563_SNP [dm6]	A	C	1.976e^-4	1	INTRON Dmtn	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3R	23315789	3R_23315789_SNP [dm3] 3R_27490067_SNP [dm6]	A	C	1.977e^-4	1	DOWNSTREAM Gr98a INTERGENIC
3R	11496032	3R_11496032_SNP [dm3] 3R_15670310_SNP [dm6]	A	G	1.989e^-4	1	INTRON pxb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	19171697	3L_19171697_SNP [dm3] 3L_19178597_SNP [dm6]	G	A	1.996e^-4	1	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	5265642	3L_5265642_SNP [dm3] 3L_5272542_SNP [dm6]	T	G	1.999e^-4	1	UTR_5_PRIME shep INTRON shep
3R	22761028	3R_22761028_SNP [dm3] 3R_26935306_SNP [dm6]	T	G	2.006e^-4	1	INTRON sda
2L	9773356	2L_9773356_SNP [dm3] 2L_9773356_SNP [dm6]	G	T	2.013e^-4	1	UPSTREAM ppk16 INTRON ppk11
3R	26335024	3R_26335024_SNP [dm3] 3R_30509302_SNP [dm6]	T	C	2.019e^-4	1	SYNONYMOUS_CODING CG34041 DOWNSTREAM CG34041 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7577021	2L_7577021_SNP [dm3] 2L_7577021_SNP [dm6]	C	T	2.021e^-4	1	UPSTREAM RapGAP1 INTRON RapGAP1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2R	933187	2R_933187_SNP [dm3] 2R_5045682_SNP [dm6]	A	T	2.029e^-4	1	INTERGENIC
2L	14593246	2L_14593246_SNP [dm3] 2L_14593246_SNP [dm6]	C	G	2.046e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14984408	2L_14984408_SNP [dm3] 2L_14984408_SNP [dm6]	A	G	2.047e^-4	1	INTRON mol
3R	17918822	3R_17918822_SNP [dm3] 3R_22093100_SNP [dm6]	T	C	2.054e^-4	1	INTRON CG5778
2L	2048038	2L_2048038_SNP [dm3] 2L_2048038_SNP [dm6]	A	G	2.059e^-4	1	UTR_3_PRIME Kebab DOWNSTREAM Kebab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9997055	3R_9997055_DEL [dm3] 3R_14171333_DEL [dm6]	GGGTG	G	2.068e^-4	1	UTR_3_PRIME Dop1R1
2L	4441352	2L_4441352_SNP [dm3] 2L_4441352_SNP [dm6]	C	T	2.068e^-4	1	UPSTREAM CG15431 & 1 other DOWNSTREAM Sfp24F INTERGENIC	TF binding site mE1_TFBS_Trl
2L	10033561	2L_10033561_SNP [dm3] 2L_10033561_SNP [dm6]	C	G	2.072e^-4	1	INTRON obst-B
2L	993253	2L_993253_SNP [dm3] 2L_993253_SNP [dm6]	C	T	2.076e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1676421	3L_1676421_SNP [dm3] 3L_1676421_SNP [dm6]	T	C	2.085e^-4	1	INTRON CG7991
2L	1453707	2L_1453707_SNP [dm3] 2L_1453707_SNP [dm6]	C	A	2.086e^-4	1	INTERGENIC
3R	12013678	3R_12013678_INS [dm3] 3R_16187956_INS [dm6]	A	AA	2.103e^-4	1	INTRON sra	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18832035	3R_18832035_SNP [dm3] 3R_23006313_SNP [dm6]	C	A	2.103e^-4	1	INTRON CG34375
3R	10442012	3R_10442012_SNP [dm3] 3R_14616290_SNP [dm6]	T	G	2.116e^-4	1	INTRON CG14853
3L	8244349	3L_8244349_SNP [dm3] 3L_8251249_SNP [dm6]	C	T	2.129e^-4	1	INTRON Dscam4
3R	18526040	3R_18526040_INS [dm3] 3R_22700318_INS [dm6]	T	TGCTT	2.135e^-4	1	DOWNSTREAM CCAP & 1 other INTERGENIC
2L	13966805	2L_13966805_SNP [dm3] 2L_13966805_SNP [dm6]	C	G	2.135e^-4	1	SYNONYMOUS_CODING NimB2 DOWNSTREAM NimB3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17618557	3L_17618557_SNP [dm3] 3L_17625457_SNP [dm6]	G	A	2.137e^-4	1	INTRON CG7510	TF binding site mE1_TFBS_inv
2R	17139078	2R_17139078_SNP [dm3] 2R_21251573_SNP [dm6]	T	C	2.139e^-4	1	UPSTREAM ASPP INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	8254565	2R_8254565_SNP [dm3] 2R_12367060_SNP [dm6]	C	A	2.147e^-4	1	UPSTREAM CG33012 DOWNSTREAM CR33013 INTERGENIC
2L	14598936	2L_14598936_SNP [dm3] 2L_14598936_SNP [dm6]	G	A	2.147e^-4	1	UPSTREAM tRNA:P:35Bc DOWNSTREAM osp & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8371128	2L_8371128_SNP [dm3] 2L_8371128_SNP [dm6]	T	C	2.155e^-4	1	UTR_5_PRIME CG17292 UPSTREAM CR45341 INTRON CG17292
3L	18440771	3L_18440771_SNP [dm3] 3L_18447671_SNP [dm6]	C	G	2.158e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	10442328	3R_10442328_SNP [dm3] 3R_14616606_SNP [dm6]	G	A	2.181e^-4	1	INTRON CG14853
X	15416903	X_15416903_SNP [dm3] X_15522870_SNP [dm6]	C	T	2.192e^-4	1	UPSTREAM Ac13E INTRON Ac13E
2L	17393233	2L_17393233_SNP [dm3] 2L_17393233_SNP [dm6]	G	A	2.204e^-4	1	INTRON CLIP-190
2L	10222167	2L_10222167_SNP [dm3] 2L_10222167_SNP [dm6]	T	G	2.209e^-4	1	UPSTREAM Npc1a & 1 other INTRON Prosalpha6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
3R	13045227	3R_13045227_SNP [dm3] 3R_17219505_SNP [dm6]	C	T	2.211e^-4	1	INTRON CG31262
3R	11265025	3R_11265025_SNP [dm3] 3R_15439303_SNP [dm6]	A	G	2.228e^-4	1	UPSTREAM Act88F INTERGENIC	regulatory region REDfly_CRMs
3R	11265027	3R_11265027_SNP [dm3] 3R_15439305_SNP [dm6]	A	T	2.235e^-4	1	UPSTREAM Act88F INTERGENIC	regulatory region REDfly_CRMs
3L	2529135	3L_2529135_SNP [dm3] 3L_2529135_SNP [dm6]	G	A	2.236e^-4	1	INTRON Spn
3R	17966205	3R_17966205_SNP [dm3] 3R_22140483_SNP [dm6]	G	A	2.256e^-4	1	INTRON SKIP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6402330	X_6402330_INS [dm3] X_6508297_INS [dm6]	T	TGCCGATGCCGAT...	2.265e^-4	1	INTRON CG42340
3R	22003648	3R_22003648_SNP [dm3] 3R_26177926_SNP [dm6]	G	A	2.270e^-4	1	INTRON CG31323
3R	10036498	3R_10036498_SNP [dm3] 3R_14210776_SNP [dm6]	C	T	2.275e^-4	1	INTRON Dop1R1
2R	13944868	2R_13944868_SNP [dm3] 2R_18057363_SNP [dm6]	G	T	2.276e^-4	1	UPSTREAM CG10912 DOWNSTREAM CR45314 INTERGENIC	TF binding site mE1_TFBS_cad
3L	3687421	3L_3687421_SNP [dm3] 3L_3687421_SNP [dm6]	A	G	2.278e^-4	1	INTERGENIC
2L	1444856	2L_1444856_SNP [dm3] 2L_1444856_SNP [dm6]	G	C	2.280e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9148681	3L_9148681_SNP [dm3] 3L_9155581_SNP [dm6]	G	A	2.288e^-4	1	INTRON Rdl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15697586	3L_15697586_INS [dm3] 3L_15704486_INS [dm6]	A	AGAA	2.293e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8244521	3L_8244521_SNP [dm3] 3L_8251421_SNP [dm6]	A	G	2.294e^-4	1	INTRON Dscam4
2L	11361146	2L_11361146_SNP [dm3] 2L_11361146_SNP [dm6]	C	T	2.296e^-4	1	INTRON salr	regulatory region REDfly_CRMs
3L	15760850	3L_15760850_SNP [dm3] 3L_15767750_SNP [dm6]	G	A	2.298e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	4484358	2R_4484358_SNP [dm3] 2R_8596853_SNP [dm6]	G	A	2.300e^-4	1	DOWNSTREAM CG8735 INTERGENIC
2L	14604070	2L_14604070_SNP [dm3] 2L_14604070_SNP [dm6]	A	G	2.302e^-4	1	SYNONYMOUS_CODING osp	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13219288	2R_13219288_SNP [dm3] 2R_17331783_SNP [dm6]	G	T	2.311e^-4	1	INTRON mbl	TF binding site BDTNP1_TFBS_prd
2L	10221175	2L_10221175_SNP [dm3] 2L_10221175_SNP [dm6]	T	C	2.329e^-4	1	UTR_5_PRIME Npc1a UPSTREAM Prosalpha6 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	3796645	X_3796645_SNP [dm3] X_3902612_SNP [dm6]	G	A	2.335e^-4	1	INTRON CG42541
2L	20826999	2L_20826999_SNP [dm3] 2L_20826999_SNP [dm6]	C	T	2.352e^-4	1	INTRON CG9331
3L	12429614	3L_12429614_SNP [dm3] 3L_12436514_SNP [dm6]	A	G	2.352e^-4	1	INTERGENIC
X	3520800	X_3520800_SNP [dm3] X_3626767_SNP [dm6]	T	G	2.356e^-4	1	INTRON AstA-R1
3L	11054043	3L_11054043_DEL [dm3] 3L_11060943_DEL [dm6]	GG	G	2.359e^-4	1	UPSTREAM Blos2 INTRON CG6321
2L	9942129	2L_9942129_SNP [dm3] 2L_9942129_SNP [dm6]	T	C	2.360e^-4	1	UTR_3_PRIME CG4619 INTRON CG5853	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5746480	X_5746480_SNP [dm3] X_5852447_SNP [dm6]	A	G	2.365e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18166159	3R_18166159_SNP [dm3] 3R_22340437_SNP [dm6]	T	A	2.371e^-4	1	UPSTREAM CG5388 DOWNSTREAM CG5386 INTERGENIC
3L	18207558	3L_18207558_SNP [dm3] 3L_18214458_SNP [dm6]	A	G	2.373e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	18525992	3R_18525992_SNP [dm3] 3R_22700270_SNP [dm6]	C	T	2.376e^-4	1	UTR_3_PRIME Cyp6d4 DOWNSTREAM CCAP
3L	3278139	3L_3278139_SNP [dm3] 3L_3278139_SNP [dm6]	G	A	2.386e^-4	1	INTERGENIC
3L	15625560	3L_15625560_SNP [dm3] 3L_15632460_SNP [dm6]	T	C	2.398e^-4	1	UTR_5_PRIME comm3 INTRON comm3
3R	13521494	3R_13521494_SNP [dm3] 3R_17695772_SNP [dm6]	T	C	2.402e^-4	1	INTRON osa
3R	3417685	3R_3417685_SNP [dm3] 3R_7591963_SNP [dm6]	G	A	2.409e^-4	1	INTRON CG34127
2L	13895956	2L_13895956_SNP [dm3] 2L_13895956_SNP [dm6]	A	G	2.412e^-4	1	SYNONYMOUS_CODING CenG1A	TF binding site mE1_TFBS_cad
2L	14001743	2L_14001743_SNP [dm3] 2L_14001743_SNP [dm6]	G	A	2.413e^-4	1	UPSTREAM rk INTERGENIC
2L	14457306	2L_14457306_SNP [dm3] 2L_14457306_SNP [dm6]	G	A	2.416e^-4	1	EXON CR44730	TF binding site mE1_TFBS_cad
3R	21404898	3R_21404898_SNP [dm3] 3R_25579176_SNP [dm6]	G	A	2.417e^-4	1	INTRON msi
2R	12670105	2R_12670105_SNP [dm3] 2R_16782600_SNP [dm6]	C	T	2.418e^-4	1	SYNONYMOUS_CODING resilin	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16580631	2R_16580631_SNP [dm3] 2R_20693126_SNP [dm6]	G	T	2.418e^-4	1	SYNONYMOUS_CODING CG13438 DOWNSTREAM CR44659
3R	26235369	3R_26235369_SNP [dm3] 3R_30409647_SNP [dm6]	A	T	2.422e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15305669	3L_15305669_SNP [dm3] 3L_15312569_SNP [dm6]	G	T	2.424e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	20332580	3R_20332580_SNP [dm3] 3R_24506858_SNP [dm6]	A	T	2.426e^-4	1	INTERGENIC
3R	17966313	3R_17966313_SNP [dm3] 3R_22140591_SNP [dm6]	G	T	2.433e^-4	1	INTRON SKIP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	7193520	2L_7193520_SNP [dm3] 2L_7193520_SNP [dm6]	C	G	2.435e^-4	1	INTRON CG4497	TF binding site BDTNP1_TFBS_dl
3L	15676878	3L_15676878_SNP [dm3] 3L_15683778_SNP [dm6]	C	T	2.452e^-4	1	UPSTREAM pgant8 & 1 other INTERGENIC
3L	19212525	3L_19212525_SNP [dm3] 3L_19219425_SNP [dm6]	A	T	2.454e^-4	1	INTRON fz2
2L	14603599	2L_14603599_SNP [dm3] 2L_14603599_SNP [dm6]	G	C	2.456e^-4	1	SYNONYMOUS_CODING osp	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
2L	12225387	2L_12225387_SNP [dm3] 2L_12225387_SNP [dm6]	G	A	2.456e^-4	1	INTRON aret
3L	15713920	3L_15713920_SNP [dm3] 3L_15720820_SNP [dm6]	C	T	2.460e^-4	1	DOWNSTREAM CG42570 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	12429646	3L_12429646_SNP [dm3] 3L_12436546_SNP [dm6]	A	G	2.471e^-4	1	INTERGENIC
2L	12116099	2L_12116099_SNP [dm3] 2L_12116099_SNP [dm6]	G	T	2.472e^-4	1	INTRON CG17211
3R	20199114	3R_20199114_SNP [dm3] 3R_24373392_SNP [dm6]	T	G	2.474e^-4	1	UPSTREAM CG17782 DOWNSTREAM CG17781 INTERGENIC
2R	16184868	2R_16184868_SNP [dm3] 2R_20297363_SNP [dm6]	T	C	2.483e^-4	1	INTERGENIC
2L	11939409	2L_11939409_SNP [dm3] 2L_11939409_SNP [dm6]	A	G	2.498e^-4	1	DOWNSTREAM Or33c INTERGENIC
2L	3618018	2L_3618018_SNP [dm3] 2L_3618018_SNP [dm6]	C	G	2.499e^-4	1	DOWNSTREAM CR44310 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	14643943	3L_14643943_SNP [dm3] 3L_14650843_SNP [dm6]	C	G	2.504e^-4	1	INTRON dlp	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	11209254	2L_11209254_SNP [dm3] 2L_11209254_SNP [dm6]	A	C	2.509e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE
3R	13648641	3R_13648641_SNP [dm3] 3R_17822919_SNP [dm6]	T	C	2.512e^-4	1	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4336078	X_4336078_SNP [dm3] X_4442045_SNP [dm6]	A	G	2.517e^-4	1	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs
3L	12602500	3L_12602500_DEL [dm3] 3L_12609400_DEL [dm6]	GAAC	G	2.531e^-4	1	UPSTREAM caup INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	23606197	3R_23606197_INS [dm3] 3R_27780475_INS [dm6]	A	AA	2.532e^-4	1	INTRON CG34353
2R	16409391	2R_16409391_SNP [dm3] 2R_20521886_SNP [dm6]	A	C	2.535e^-4	1	INTERGENIC
3R	15403318	3R_15403318_SNP [dm3] 3R_19577596_SNP [dm6]	T	G	2.537e^-4	1	INTRON Dys
2L	9886885	2L_9886885_SNP [dm3] 2L_9886885_SNP [dm6]	A	G	2.539e^-4	1	UPSTREAM CR44701 & 1 other INTERGENIC
2L	9239176	2L_9239176_SNP [dm3] 2L_9239176_SNP [dm6]	A	T	2.542e^-4	1	SYNONYMOUS_CODING tai	TF binding site mE1_TFBS_cad
X	9184283	X_9184283_SNP [dm3] X_9290250_SNP [dm6]	C	A	2.544e^-4	1	INTRON lz	TF binding site mE1_TFBS_Kr
X	16188372	X_16188372_SNP [dm3] X_16294339_SNP [dm6]	C	T	2.550e^-4	1	DOWNSTREAM caz INTRON CG9911
X	12381376	X_12381376_SNP [dm3] X_12487343_SNP [dm6]	T	G	2.555e^-4	1	INTRON Cpr11A
3L	7584418	3L_7584418_SNP [dm3] 3L_7591318_SNP [dm6]	T	C	2.558e^-4	1	UPSTREAM CG7716 INTERGENIC
3R	10731275	3R_10731275_SNP [dm3] 3R_14905553_SNP [dm6]	A	T	2.560e^-4	1	INTERGENIC
3L	17605562	3L_17605562_SNP [dm3] 3L_17612462_SNP [dm6]	G	A	2.574e^-4	1	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	4332544	2L_4332544_SNP [dm3] 2L_4332544_SNP [dm6]	A	G	2.578e^-4	1	DOWNSTREAM CG16857 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Trl
X	3247070	X_3247070_SNP [dm3] X_3353037_SNP [dm6]	T	C	2.579e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
3L	19185476	3L_19185476_SNP [dm3] 3L_19192376_SNP [dm6]	G	A	2.587e^-4	1	INTRON fz2
2L	9509979	2L_9509979_SNP [dm3] 2L_9509979_SNP [dm6]	G	T	2.589e^-4	1	INTRON CG33298
2L	294816	2L_294816_SNP [dm3] 2L_294816_SNP [dm6]	G	C	2.590e^-4	1	UPSTREAM Hop & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17393083	2L_17393083_SNP [dm3] 2L_17393083_SNP [dm6]	A	C	2.590e^-4	1	INTRON CLIP-190
2R	16580664	2R_16580664_SNP [dm3] 2R_20693159_SNP [dm6]	C	T	2.598e^-4	1	SYNONYMOUS_CODING CG13438 DOWNSTREAM CR44659
3L	2737307	3L_2737307_SNP [dm3] 3L_2737307_SNP [dm6]	T	A	2.603e^-4	1	INTRON Mrtf
3L	18413236	3L_18413236_SNP [dm3] 3L_18420136_SNP [dm6]	A	G	2.609e^-4	1	INTERGENIC
2L	13970508	2L_13970508_SNP [dm3] 2L_13970508_SNP [dm6]	C	T	2.620e^-4	1	UTR_5_PRIME NimB5 UPSTREAM NimB4
2L	5023300	2L_5023300_SNP [dm3] 2L_5023300_SNP [dm6]	A	G	2.622e^-4	1	INTRON vkg
2L	10011711	2L_10011711_SNP [dm3] 2L_10011711_SNP [dm6]	C	A	2.625e^-4	1	SYNONYMOUS_CODING Trp1
2R	11266741	2R_11266741_SNP [dm3] 2R_15379236_SNP [dm6]	T	A	2.626e^-4	1	INTRON dup	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	2734927	3L_2734927_SNP [dm3] 3L_2734927_SNP [dm6]	A	T	2.628e^-4	1	UPSTREAM Mrtf INTRON Mrtf
X	12734921	X_12734921_INS [dm3] X_12840888_INS [dm6]	A	AGCCA	2.629e^-4	1	INTRON Pde9
X	12734929	X_12734929_SNP [dm3] X_12840896_SNP [dm6]	C	G	2.629e^-4	1	INTRON Pde9
2L	14341663	2L_14341663_SNP [dm3] 2L_14341663_SNP [dm6]	T	C	2.633e^-4	1	UPSTREAM CG33090 INTRON CG33090	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6034843	3R_6034843_DEL [dm3] 3R_10209121_DEL [dm6]	TTACT	T	2.633e^-4	1	INTRON Syn & 1 other
3R	11497107	3R_11497107_SNP [dm3] 3R_15671385_SNP [dm6]	C	G	2.633e^-4	1	INTRON pxb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9018831	2L_9018831_SNP [dm3] 2L_9018831_SNP [dm6]	A	C	2.640e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	10034463	2R_10034463_INS [dm3] 2R_14146958_INS [dm6]	G	TA	2.643e^-4	1	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	12811127	3R_12811127_SNP [dm3] 3R_16985405_SNP [dm6]	A	C	2.664e^-4	1	INTRON CG18622
3L	2150167	3L_2150167_DEL [dm3] 3L_2150167_DEL [dm6]	GAGTG	G	2.666e^-4	1	UTR_5_PRIME zormin
X	17628292	X_17628292_INS [dm3] X_17734259_INS [dm6]	G	GG	2.667e^-4	1	INTRON CG42684	TF binding site BDTNP1_TFBS_dl
2R	5980114	2R_5980114_SNP [dm3] 2R_10092609_SNP [dm6]	C	A	2.697e^-4	1	INTRON CG2269
2L	13487368	2L_13487368_SNP [dm3] 2L_13487368_SNP [dm6]	G	T	2.704e^-4	1	INTRON CG42784
2L	968990	2L_968990_SNP [dm3] 2L_968990_SNP [dm6]	C	A	2.706e^-4	1	INTERGENIC
3R	24020490	3R_24020490_SNP [dm3] 3R_28194768_SNP [dm6]	C	T	2.725e^-4	1	INTRON CG34354
3R	18151213	3R_18151213_SNP [dm3] 3R_22325491_SNP [dm6]	G	C	2.725e^-4	1	INTERGENIC
X	16596944	X_16596944_SNP [dm3] X_16702911_SNP [dm6]	G	T	2.737e^-4	1	UTR_3_PRIME CG9673 UPSTREAM spheroide INTRON CG4678
3R	20911818	3R_20911818_SNP [dm3] 3R_25086096_SNP [dm6]	C	T	2.741e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11452677	2R_11452677_SNP [dm3] 2R_15565172_SNP [dm6]	G	A	2.742e^-4	1	INTRON CG8195	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
2R	11734065	2R_11734065_SNP [dm3] 2R_15846560_SNP [dm6]	T	A	2.744e^-4	1	INTRON tun & 1 other
3L	2737308	3L_2737308_SNP [dm3] 3L_2737308_SNP [dm6]	A	T	2.762e^-4	1	INTRON Mrtf
3R	10731293	3R_10731293_SNP [dm3] 3R_14905571_SNP [dm6]	G	T	2.774e^-4	1	INTERGENIC
2R	13608227	2R_13608227_SNP [dm3] 2R_17720722_SNP [dm6]	G	C	2.790e^-4	1	INTERGENIC
X	14167553	X_14167553_SNP [dm3] X_14273520_SNP [dm6]	C	T	2.795e^-4	1	INTRON na
X	13920881	X_13920881_DEL [dm3] X_14026848_DEL [dm6]	GG	G	2.796e^-4	1	INTERGENIC
3R	10084841	3R_10084841_SNP [dm3] 3R_14259119_SNP [dm6]	A	G	2.796e^-4	1	SYNONYMOUS_CODING Aats-met
3L	14008005	3L_14008005_SNP [dm3] 3L_14014905_SNP [dm6]	T	A	2.797e^-4	1	SYNONYMOUS_CODING upSET	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	11787624	2R_11787624_SNP [dm3] 2R_15900119_SNP [dm6]	G	C	2.800e^-4	1	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	20063967	3L_20063967_SNP [dm3] 3L_20070867_SNP [dm6]	A	G	2.804e^-4	1	INTRON sNPF-R
3L	20063973	3L_20063973_SNP [dm3] 3L_20070873_SNP [dm6]	C	T	2.804e^-4	1	INTRON sNPF-R
3R	15137443	3R_15137443_SNP [dm3] 3R_19311721_SNP [dm6]	G	T	2.812e^-4	1	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	7228088	2L_7228088_SNP [dm3] 2L_7228088_SNP [dm6]	C	A	2.815e^-4	1	NON_SYNONYMOUS_CODING CG43799 INTRON Ndae1
3R	3464241	3R_3464241_SNP [dm3] 3R_7638519_SNP [dm6]	C	G	2.822e^-4	1	INTRON CG34127
3L	12429681	3L_12429681_SNP [dm3] 3L_12436581_SNP [dm6]	C	T	2.824e^-4	1	INTERGENIC
2R	13640325	2R_13640325_SNP [dm3] 2R_17752820_SNP [dm6]	C	A	2.826e^-4	1	SYNONYMOUS_CODING CG5002 DOWNSTREAM CG6385	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	4329531	X_4329531_SNP [dm3] X_4435498_SNP [dm6]	T	G	2.877e^-4	1	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
3L	22505053	3L_22505053_SNP [dm3] 3L_22511953_SNP [dm6]	T	A	2.879e^-4	1	DOWNSTREAM CR45429 INTERGENIC	transposable element FlyBase
3R	11265083	3R_11265083_SNP [dm3] 3R_15439361_SNP [dm6]	A	G	2.881e^-4	1	UPSTREAM Act88F INTERGENIC	regulatory region REDfly_CRMs
2L	22028653	2L_22028653_SNP [dm3] 2L_22028653_SNP [dm6]	T	A	2.885e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5141974	3L_5141974_SNP [dm3] 3L_5148874_SNP [dm6]	G	A	2.892e^-4	1	SYNONYMOUS_CODING Aats-ala-m DOWNSTREAM Gen	TF binding site mE1_TFBS_chinmo
3R	17522710	3R_17522710_SNP [dm3] 3R_21696988_SNP [dm6]	A	T	2.893e^-4	1	INTRON CG31176
3R	24284716	3R_24284716_SNP [dm3] 3R_28458994_SNP [dm6]	A	G	2.904e^-4	1	INTRON beat-VI
2R	11021533	2R_11021533_SNP [dm3] 2R_15134028_SNP [dm6]	T	C	2.917e^-4	1	INTRON chn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	14042424	3R_14042424_SNP [dm3] 3R_18216702_SNP [dm6]	A	G	2.922e^-4	1	INTRON CG14314	TF binding site mE1_TFBS_cad
3R	17522722	3R_17522722_SNP [dm3] 3R_21697000_SNP [dm6]	G	A	2.926e^-4	1	INTRON CG31176
X	4251996	X_4251996_SNP [dm3] X_4357963_SNP [dm6]	T	A	2.930e^-4	1	INTRON norpA
2R	1442814	2R_1442814_SNP [dm3] 2R_5555309_SNP [dm6]	C	T	2.944e^-4	1	INTERGENIC
2L	6110714	2L_6110714_SNP [dm3] 2L_6110714_SNP [dm6]	C	A	2.960e^-4	1	INTRON stai
3L	4797713	3L_4797713_SNP [dm3] 3L_4797713_SNP [dm6]	C	G	2.970e^-4	1	INTERGENIC
2L	17337872	2L_17337872_SNP [dm3] 2L_17337872_SNP [dm6]	C	A	2.974e^-4	1	INTERGENIC
X	9184281	X_9184281_SNP [dm3] X_9290248_SNP [dm6]	C	T	2.981e^-4	1	INTRON lz	TF binding site mE1_TFBS_Kr
X	9540012	X_9540012_SNP [dm3] X_9645979_SNP [dm6]	C	T	2.981e^-4	1	UPSTREAM l_1_G0232 INTRON l_1_G0232	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20476162	X_20476162_SNP [dm3] X_20605135_SNP [dm6]	C	T	2.984e^-4	1	INTRON RunxA
3R	9819227	3R_9819227_SNP [dm3] 3R_13993505_SNP [dm6]	C	T	2.986e^-4	1	INTRON rdx
2L	4333058	2L_4333058_SNP [dm3] 2L_4333058_SNP [dm6]	G	C	2.991e^-4	1	UPSTREAM Atet INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3R	16492428	3R_16492428_SNP [dm3] 3R_20666706_SNP [dm6]	C	T	3.029e^-4	1	INTERGENIC
2R	4589005	2R_4589005_SNP [dm3] 2R_8701500_SNP [dm6]	C	G	3.033e^-4	1	NON_SYNONYMOUS_CODING CG8584 UPSTREAM CG12376
2L	2392212	2L_2392212_SNP [dm3] 2L_2392212_SNP [dm6]	A	T	3.034e^-4	1	INTRON VGlut
X	6533850	X_6533850_SNP [dm3] X_6639817_SNP [dm6]	G	A	3.035e^-4	1	INTRON pigs
3R	12013634	3R_12013634_SNP [dm3] 3R_16187912_SNP [dm6]	C	T	3.041e^-4	1	INTRON sra	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9471251	2L_9471251_SNP [dm3] 2L_9471251_SNP [dm6]	T	A	3.058e^-4	1	DOWNSTREAM CR43769 INTERGENIC
3R	11498667	3R_11498667_SNP [dm3] 3R_15672945_SNP [dm6]	A	G	3.066e^-4	1	INTRON pxb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sbb
3R	4161737	3R_4161737_SNP [dm3] 3R_8336015_SNP [dm6]	G	A	3.071e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	2606988	2R_2606988_SNP [dm3] 2R_6719483_SNP [dm6]	G	A	3.072e^-4	1	SYNONYMOUS_CODING Zip42C.2	TF binding site mE1_TFBS_cad
2R	2636978	2R_2636978_DEL [dm3] 2R_6749473_DEL [dm6]	CTC	C	3.075e^-4	1	UPSTREAM Eb1 DOWNSTREAM CG3267 INTRON Eb1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12429648	3L_12429648_SNP [dm3] 3L_12436548_SNP [dm6]	C	T	3.095e^-4	1	INTERGENIC
3R	11110466	3R_11110466_SNP [dm3] 3R_15284744_SNP [dm6]	T	C	3.113e^-4	1	SYNONYMOUS_CODING Tm1
3R	18525998	3R_18525998_SNP [dm3] 3R_22700276_SNP [dm6]	A	T	3.117e^-4	1	UTR_3_PRIME Cyp6d4 DOWNSTREAM CCAP
2R	13609020	2R_13609020_SNP [dm3] 2R_17721515_SNP [dm6]	G	A	3.120e^-4	1	UPSTREAM CG10934 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	11466815	3R_11466815_SNP [dm3] 3R_15641093_SNP [dm6]	G	C	3.121e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	15697646	3L_15697646_SNP [dm3] 3L_15704546_SNP [dm6]	G	A	3.123e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	15697660	3L_15697660_SNP [dm3] 3L_15704560_SNP [dm6]	A	G	3.123e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	2734932	3L_2734932_SNP [dm3] 3L_2734932_SNP [dm6]	C	T	3.132e^-4	1	UPSTREAM Mrtf INTRON Mrtf
2R	14456671	2R_14456671_DEL [dm3] 2R_18569166_DEL [dm6]	TTTGGCA	T	3.132e^-4	1	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6557938	3L_6557938_SNP [dm3] 3L_6564838_SNP [dm6]	A	T	3.135e^-4	1	NON_SYNONYMOUS_CODING jv INTRON CG18769	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
2L	20845330	2L_20845330_SNP [dm3] 2L_20845330_SNP [dm6]	T	C	3.149e^-4	1	INTRON CG31676
3L	7583248	3L_7583248_SNP [dm3] 3L_7590148_SNP [dm6]	T	A	3.150e^-4	1	SYNONYMOUS_CODING CG7716
3L	13208899	3L_13208899_SNP [dm3] 3L_13215799_SNP [dm6]	G	C	3.154e^-4	1	UPSTREAM CR43914 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9022152	2L_9022152_SNP [dm3] 2L_9022152_SNP [dm6]	C	A	3.165e^-4	1	INTERGENIC
3L	22961644	3L_22961644_DEL [dm3] 3L_22968544_DEL [dm6]	TT	T	3.166e^-4	1	INTERGENIC
X	6640114	X_6640114_SNP [dm3] X_6746081_SNP [dm6]	T	C	3.193e^-4	1	DOWNSTREAM CR44964 EXON CR44895
2L	14600388	2L_14600388_SNP [dm3] 2L_14600388_SNP [dm6]	T	C	3.198e^-4	1	UTR_3_PRIME osp UPSTREAM tRNA:P:35Bb DOWNSTREAM tRNA:P:35Bc	TF binding site mE1_TFBS_HSA
2R	1060551	2R_1060551_SNP [dm3] 2R_5173046_SNP [dm6]	C	G	3.212e^-4	1	INTERGENIC
2R	11963044	2R_11963044_SNP [dm3] 2R_16075539_SNP [dm6]	T	A	3.212e^-4	1	INTERGENIC
X	6008355	X_6008355_SNP [dm3] X_6114322_SNP [dm6]	A	G	3.218e^-4	1	SYNONYMOUS_CODING Ca-alpha1T	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5461968	2L_5461968_SNP [dm3] 2L_5461968_SNP [dm6]	T	A	3.220e^-4	1	SYNONYMOUS_CODING mid	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	13919795	2L_13919795_SNP [dm3] 2L_13919795_SNP [dm6]	C	A	3.229e^-4	1	DOWNSTREAM CG16886 INTRON Ance-3
3L	15680324	3L_15680324_SNP [dm3] 3L_15687224_SNP [dm6]	A	G	3.231e^-4	1	DOWNSTREAM pgant8 INTRON CG34452
3R	10084880	3R_10084880_SNP [dm3] 3R_14259158_SNP [dm6]	C	A	3.236e^-4	1	SYNONYMOUS_CODING Aats-met
3L	18309913	3L_18309913_SNP [dm3] 3L_18316813_SNP [dm6]	C	A	3.239e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	24245473	3R_24245473_SNP [dm3] 3R_28419751_SNP [dm6]	A	G	3.242e^-4	1	INTRON beat-VI
2R	17937857	2R_17937857_SNP [dm3] 2R_22050352_SNP [dm6]	T	C	3.242e^-4	1	INTERGENIC
2L	1444217	2L_1444217_SNP [dm3] 2L_1444217_SNP [dm6]	A	C	3.243e^-4	1	DOWNSTREAM CG43402 INTERGENIC
X	17324744	X_17324744_SNP [dm3] X_17430711_SNP [dm6]	C	T	3.244e^-4	1	INTRON CG12994
2L	1451733	2L_1451733_SNP [dm3] 2L_1451733_SNP [dm6]	C	T	3.244e^-4	1	INTERGENIC
2R	16665002	2R_16665002_SNP [dm3] 2R_20777497_SNP [dm6]	G	A	3.245e^-4	1	NON_SYNONYMOUS_CODING CG43710 DOWNSTREAM CG43711
3R	13913027	3R_13913027_SNP [dm3] 3R_18087305_SNP [dm6]	G	A	3.253e^-4	1	INTERGENIC
3R	13913031	3R_13913031_SNP [dm3] 3R_18087309_SNP [dm6]	T	C	3.253e^-4	1	INTERGENIC
3L	21739730	3L_21739730_SNP [dm3] 3L_21746630_SNP [dm6]	A	G	3.293e^-4	1	INTRON Syn1
3L	5870302	3L_5870302_SNP [dm3] 3L_5877202_SNP [dm6]	C	T	3.309e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14189445	2L_14189445_SNP [dm3] 2L_14189445_SNP [dm6]	A	C	3.312e^-4	1	INTRON Dyrk2
3L	2759156	3L_2759156_SNP [dm3] 3L_2759156_SNP [dm6]	T	C	3.312e^-4	1	INTRON Mrtf
3L	2833704	3L_2833704_SNP [dm3] 3L_2833704_SNP [dm6]	T	A	3.315e^-4	1	INTRON CG43444
3L	12429679	3L_12429679_SNP [dm3] 3L_12436579_SNP [dm6]	C	T	3.330e^-4	1	INTERGENIC
3L	24036407	3L_24036407_SNP [dm3] 3L_24043307_SNP [dm6]	C	T	3.331e^-4	1	INTERGENIC
3L	14680165	3L_14680165_SNP [dm3] 3L_14687065_SNP [dm6]	C	G	3.333e^-4	1	INTRON ome
2R	16624012	2R_16624012_SNP [dm3] 2R_20736507_SNP [dm6]	C	T	3.341e^-4	1	INTRON dpr
3R	10442030	3R_10442030_SNP [dm3] 3R_14616308_SNP [dm6]	T	A	3.343e^-4	1	INTRON CG14853
2L	2147510	2L_2147510_INS [dm3] 2L_2147510_INS [dm6]	A	AACTGA	3.351e^-4	1	UPSTREAM CG7261 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	15139295	3L_15139295_SNP [dm3] 3L_15146195_SNP [dm6]	T	A	3.355e^-4	1	UTR_3_PRIME Pex3 UPSTREAM FucTA DOWNSTREAM Pex3
2R	13158500	2R_13158500_SNP [dm3] 2R_17270995_SNP [dm6]	C	A	3.358e^-4	1	INTRON mbl
2L	9025807	2L_9025807_SNP [dm3] 2L_9025807_SNP [dm6]	C	T	3.365e^-4	1	UPSTREAM CG9582 INTRON CG9582 EXON CR44352
3R	18148552	3R_18148552_SNP [dm3] 3R_22322830_SNP [dm6]	A	G	3.366e^-4	1	INTRON CG34377
2R	14696326	2R_14696326_SNP [dm3] 2R_18808821_SNP [dm6]	A	G	3.370e^-4	1	INTRON CG15096	TF binding site mE1_TFBS_chinmo
2R	11021119	2R_11021119_SNP [dm3] 2R_15133614_SNP [dm6]	A	G	3.370e^-4	1	INTRON chn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3R	10053835	3R_10053835_SNP [dm3] 3R_14228113_SNP [dm6]	A	T	3.373e^-4	1	UTR_3_PRIME CG9624
3L	4797697	3L_4797697_SNP [dm3] 3L_4797697_SNP [dm6]	T	G	3.381e^-4	1	INTERGENIC
3L	12429649	3L_12429649_SNP [dm3] 3L_12436549_SNP [dm6]	T	A	3.388e^-4	1	INTERGENIC
2L	4441396	2L_4441396_SNP [dm3] 2L_4441396_SNP [dm6]	C	T	3.400e^-4	1	UPSTREAM CG15431 & 1 other DOWNSTREAM Sfp24F INTERGENIC	TF binding site mE1_TFBS_Trl
2L	1353789	2L_1353789_SNP [dm3] 2L_1353789_SNP [dm6]	G	A	3.400e^-4	1	SYNONYMOUS_CODING CG5561 UPSTREAM CG5556 DOWNSTREAM CG31924
2R	15136597	2R_15136597_SNP [dm3] 2R_19249092_SNP [dm6]	A	G	3.402e^-4	1	UPSTREAM wbl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_Trl
2R	2634681	2R_2634681_SNP [dm3] 2R_6747176_SNP [dm6]	G	A	3.412e^-4	1	INTRON CG3267
3L	15712065	3L_15712065_SNP [dm3] 3L_15718965_SNP [dm6]	C	T	3.413e^-4	1	INTRON CG42570
3L	19185491	3L_19185491_SNP [dm3] 3L_19192391_SNP [dm6]	T	C	3.422e^-4	1	INTRON fz2
2R	1060559	2R_1060559_SNP [dm3] 2R_5173054_SNP [dm6]	C	A	3.441e^-4	1	INTERGENIC
3L	15674241	3L_15674241_SNP [dm3] 3L_15681141_SNP [dm6]	A	C	3.442e^-4	1	NON_SYNONYMOUS_CODING CG7304 DOWNSTREAM CG7579
2L	11939564	2L_11939564_SNP [dm3] 2L_11939564_SNP [dm6]	G	A	3.442e^-4	1	DOWNSTREAM Or33c INTERGENIC
3L	2529139	3L_2529139_SNP [dm3] 3L_2529139_SNP [dm6]	G	A	3.449e^-4	1	INTRON Spn
2R	9223712	2R_9223712_SNP [dm3] 2R_13336207_SNP [dm6]	T	A	3.450e^-4	1	INTRON CR44206	TF binding site BDTNP1_TFBS_twi
3R	13648596	3R_13648596_SNP [dm3] 3R_17822874_SNP [dm6]	T	A	3.458e^-4	1	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1453982	X_1453982_DEL [dm3] X_1559949_DEL [dm6]	TTT	T	3.460e^-4	1	INTRON Mur2B
3R	11327556	3R_11327556_SNP [dm3] 3R_15501834_SNP [dm6]	A	T	3.463e^-4	1	INTERGENIC
2L	14592037	2L_14592037_SNP [dm3] 2L_14592037_SNP [dm6]	C	T	3.463e^-4	1	INTERGENIC
2L	11917845	2L_11917845_SNP [dm3] 2L_11917845_SNP [dm6]	G	A	3.476e^-4	1	INTRON Pde1c
3L	13915432	3L_13915432_SNP [dm3] 3L_13922332_SNP [dm6]	T	C	3.483e^-4	1	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	12381091	X_12381091_SNP [dm3] X_12487058_SNP [dm6]	A	T	3.488e^-4	1	UTR_5_PRIME Cpr11A
2L	20470514	2L_20470514_SNP [dm3] 2L_20470514_SNP [dm6]	T	C	3.489e^-4	1	INTRON CR44980
X	15353617	X_15353617_SNP [dm3] X_15459584_SNP [dm6]	G	A	3.489e^-4	1	INTRON shtd	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2636647	2R_2636647_SNP [dm3] 2R_6749142_SNP [dm6]	G	T	3.503e^-4	1	UPSTREAM Eb1 DOWNSTREAM CG3267 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_Trl
3R	23304261	3R_23304261_SNP [dm3] 3R_27478539_SNP [dm6]	T	G	3.504e^-4	1	UPSTREAM Cyp6a18 INTERGENIC
X	6640250	X_6640250_DEL [dm3] X_6746217_DEL [dm6]	CTAC	C	3.515e^-4	1	DOWNSTREAM CR44964 EXON CR44895
2R	6752781	2R_6752781_SNP [dm3] 2R_10865276_SNP [dm6]	G	A	3.515e^-4	1	INTRON CG30015	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	1453925	X_1453925_SNP [dm3] X_1559892_SNP [dm6]	A	G	3.515e^-4	1	INTRON Mur2B
3L	10387299	3L_10387299_INS [dm3] 3L_10394199_INS [dm6]	A	AAAGGCGTGGC...	3.517e^-4	1	INTERGENIC
3R	18157545	3R_18157545_SNP [dm3] 3R_22331823_SNP [dm6]	T	G	3.520e^-4	1	UPSTREAM CG13862 DOWNSTREAM CG33721 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	12670210	2R_12670210_SNP [dm3] 2R_16782705_SNP [dm6]	T	G	3.523e^-4	1	SYNONYMOUS_CODING resilin UPSTREAM CG5522	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	11032675	2L_11032675_SNP [dm3] 2L_11032675_SNP [dm6]	C	A	3.526e^-4	1	INTRON Samuel
3L	16784415	3L_16784415_SNP [dm3] 3L_16791315_SNP [dm6]	C	A	3.533e^-4	1	NON_SYNONYMOUS_CODING CG9674 UTR_3_PRIME CG9674
2L	11094125	2L_11094125_SNP [dm3] 2L_11094125_SNP [dm6]	G	A	3.556e^-4	1	NON_SYNONYMOUS_CODING CG4705	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14611786	2L_14611786_SNP [dm3] 2L_14611786_SNP [dm6]	T	A	3.576e^-4	1	INTRON osp	regulatory region REDfly_CRMs
3R	16305473	3R_16305473_SNP [dm3] 3R_20479751_SNP [dm6]	T	C	3.580e^-4	1	INTRON Gfrl
2L	8175470	2L_8175470_SNP [dm3] 2L_8175470_SNP [dm6]	T	C	3.581e^-4	1	INTRON Piezo
3L	13956017	3L_13956017_SNP [dm3] 3L_13962917_SNP [dm6]	G	A	3.602e^-4	1	SYNONYMOUS_CODING Meics DOWNSTREAM CG32137
2R	14048842	2R_14048842_SNP [dm3] 2R_18161337_SNP [dm6]	C	T	3.606e^-4	1	SYNONYMOUS_CODING CG10915	TF binding site mE1_TFBS_sens
2L	14598826	2L_14598826_SNP [dm3] 2L_14598826_SNP [dm6]	G	A	3.612e^-4	1	UPSTREAM tRNA:P:35Ba & 1 other DOWNSTREAM osp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	1455392	X_1455392_SNP [dm3] X_1561359_SNP [dm6]	C	T	3.612e^-4	1	INTRON Mur2B
3R	10219286	3R_10219286_SNP [dm3] 3R_14393564_SNP [dm6]	G	A	3.615e^-4	1	SYNONYMOUS_CODING cv-c
3R	13648604	3R_13648604_SNP [dm3] 3R_17822882_SNP [dm6]	A	G	3.618e^-4	1	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1001566	2R_1001566_SNP [dm3] 2R_5114061_SNP [dm6]	T	C	3.620e^-4	1	INTERGENIC	transposable element FlyBase
2L	14614040	2L_14614040_SNP [dm3] 2L_14614040_SNP [dm6]	C	T	3.631e^-4	1	DOWNSTREAM CR43411 INTRON osp	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	1954704	2L_1954704_SNP [dm3] 2L_1954704_SNP [dm6]	G	C	3.636e^-4	1	UPSTREAM erm INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	1299969	3L_1299969_SNP [dm3] 3L_1299969_SNP [dm6]	G	T	3.639e^-4	1	UTR_3_PRIME scf DOWNSTREAM Rac1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16703359	2R_16703359_SNP [dm3] 2R_20815854_SNP [dm6]	C	T	3.658e^-4	1	INTERGENIC
2L	13667357	2L_13667357_SNP [dm3] 2L_13667357_SNP [dm6]	C	A	3.670e^-4	1	INTRON CG18507
3L	20064337	3L_20064337_SNP [dm3] 3L_20071237_SNP [dm6]	T	C	3.673e^-4	1	INTRON sNPF-R
3L	21768982	3L_21768982_SNP [dm3] 3L_21775882_SNP [dm6]	T	A	3.680e^-4	1	INTRON CG42689 & 1 other
2R	13219285	2R_13219285_SNP [dm3] 2R_17331780_SNP [dm6]	C	G	3.682e^-4	1	INTRON mbl	TF binding site BDTNP1_TFBS_prd
3R	18526017	3R_18526017_SNP [dm3] 3R_22700295_SNP [dm6]	T	A	3.686e^-4	1	UTR_3_PRIME Cyp6d4 DOWNSTREAM CCAP
2L	294915	2L_294915_SNP [dm3] 2L_294915_SNP [dm6]	T	C	3.695e^-4	1	UPSTREAM Hop & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	7523863	3R_7523863_SNP [dm3] 3R_11698141_SNP [dm6]	G	A	3.704e^-4	1	UTR_3_PRIME CG14717 DOWNSTREAM CG14717	TF binding site BDTNP1_TFBS_da
3R	7523914	3R_7523914_SNP [dm3] 3R_11698192_SNP [dm6]	G	A	3.704e^-4	1	UTR_3_PRIME CG14717 DOWNSTREAM CG14717	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	7298855	3L_7298855_SNP [dm3] 3L_7305755_SNP [dm6]	G	C	3.710e^-4	1	INTRON unc-13-4A
2R	910429	2R_910429_SNP [dm3] 2R_5022924_SNP [dm6]	A	T	3.712e^-4	1	DOWNSTREAM Ir41a INTERGENIC	transposable element FlyBase
3L	16508678	3L_16508678_SNP [dm3] 3L_16515578_SNP [dm6]	G	A	3.716e^-4	1	INTRON CG43373	insulator Insulator_Class_II.mE01
2L	11937644	2L_11937644_SNP [dm3] 2L_11937644_SNP [dm6]	G	T	3.736e^-4	1	UPSTREAM Or33c DOWNSTREAM Or33b INTERGENIC
3R	16049081	3R_16049081_INS [dm3] 3R_20223359_INS [dm6]	A	AA	3.746e^-4	1	INTRON Nlg4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8184482	2L_8184482_SNP [dm3] 2L_8184482_SNP [dm6]	T	G	3.754e^-4	1	INTRON Piezo
2L	6197955	2L_6197955_SNP [dm3] 2L_6197955_SNP [dm6]	T	G	3.755e^-4	1	INTRON CG34380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19183040	3L_19183040_SNP [dm3] 3L_19189940_SNP [dm6]	G	T	3.755e^-4	1	INTRON fz2	TF binding site BDTNP1_TFBS_da
X	8349240	X_8349240_SNP [dm3] X_8455207_SNP [dm6]	C	T	3.760e^-4	1	UPSTREAM org-1 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14797002	X_14797002_SNP [dm3] X_14902969_SNP [dm6]	C	G	3.775e^-4	1	INTRON Flo2 & 1 other
2R	840616	2R_840616_SNP [dm3] 2R_4953111_SNP [dm6]	A	G	3.777e^-4	1	INTRON Ir41a	transposable element FlyBase
3R	24265856	3R_24265856_SNP [dm3] 3R_28440134_SNP [dm6]	A	C	3.787e^-4	1	INTRON beat-VI
3R	24265858	3R_24265858_SNP [dm3] 3R_28440136_SNP [dm6]	A	C	3.787e^-4	1	INTRON beat-VI
3L	14678239	3L_14678239_SNP [dm3] 3L_14685139_SNP [dm6]	G	A	3.795e^-4	1	SYNONYMOUS_CODING CG5048 INTRON ome
3R	20370898	3R_20370898_SNP [dm3] 3R_24545176_SNP [dm6]	A	G	3.797e^-4	1	INTRON Esyt2	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	11251899	3R_11251899_SNP [dm3] 3R_15426177_SNP [dm6]	G	A	3.798e^-4	1	INTRON CG6118
2L	17155947	2L_17155947_SNP [dm3] 2L_17155947_SNP [dm6]	T	A	3.820e^-4	1	INTRON beat-IIIa & 1 other	TF binding site mE1_TFBS_inv
2L	10033645	2L_10033645_SNP [dm3] 2L_10033645_SNP [dm6]	A	G	3.835e^-4	1	INTRON obst-B	TF binding site mE1_TFBS_HSA transposable element FlyBase
2L	10033649	2L_10033649_SNP [dm3] 2L_10033649_SNP [dm6]	T	G	3.835e^-4	1	INTRON obst-B	TF binding site mE1_TFBS_HSA transposable element FlyBase
3L	7574926	3L_7574926_SNP [dm3] 3L_7581826_SNP [dm6]	A	G	3.840e^-4	1	INTERGENIC
2L	9391981	2L_9391981_SNP [dm3] 2L_9391981_SNP [dm6]	A	T	3.843e^-4	1	DOWNSTREAM Aldh INTRON Shawl
3R	10219064	3R_10219064_SNP [dm3] 3R_14393342_SNP [dm6]	G	A	3.847e^-4	1	SYNONYMOUS_CODING cv-c
2L	7399969	2L_7399969_SNP [dm3] 2L_7399969_SNP [dm6]	T	C	3.848e^-4	1	DOWNSTREAM CR44079 INTERGENIC
3R	15711541	3R_15711541_SNP [dm3] 3R_19885819_SNP [dm6]	G	A	3.849e^-4	1	UTR_3_PRIME Pk92B DOWNSTREAM ninaE
3R	2783885	3R_2783885_SNP [dm3] 3R_6958163_SNP [dm6]	A	G	3.851e^-4	1	INTRON Antp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16755596	2L_16755596_SNP [dm3] 2L_16755596_SNP [dm6]	C	T	3.851e^-4	1	INTRON yellow-b
3L	10387432	3L_10387432_SNP [dm3] 3L_10394332_SNP [dm6]	A	T	3.860e^-4	1	INTERGENIC
3R	24577409	3R_24577409_SNP [dm3] 3R_28751687_SNP [dm6]	C	A	3.862e^-4	1	UPSTREAM CG10000 INTERGENIC
3R	10695984	3R_10695984_SNP [dm3] 3R_14870262_SNP [dm6]	G	A	3.868e^-4	1	INTRON btsz
3R	25527144	3R_25527144_SNP [dm3] 3R_29701422_SNP [dm6]	C	A	3.870e^-4	1	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_twi
3R	24265714	3R_24265714_SNP [dm3] 3R_28439992_SNP [dm6]	A	G	3.871e^-4	1	INTRON beat-VI
3R	24265720	3R_24265720_SNP [dm3] 3R_28439998_SNP [dm6]	C	T	3.871e^-4	1	INTRON beat-VI
3R	24265859	3R_24265859_DEL [dm3] 3R_28440137_DEL [dm6]	TA	T	3.871e^-4	1	INTRON beat-VI
X	9184279	X_9184279_SNP [dm3] X_9290246_SNP [dm6]	C	T	3.873e^-4	1	INTRON lz	TF binding site mE1_TFBS_Kr
2R	13181419	2R_13181419_SNP [dm3] 2R_17293914_SNP [dm6]	A	C	3.874e^-4	1	INTRON mbl
X	17039023	X_17039023_SNP [dm3] X_17144990_SNP [dm6]	A	C	3.875e^-4	1	UPSTREAM snoRNA:Psi28S-1192d & 4 others DOWNSTREAM snoRNA:Psi18S-1854c & 4 others INTRON RpS5a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7621908	2L_7621908_SNP [dm3] 2L_7621908_SNP [dm6]	C	G	3.910e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3L	2374138	3L_2374138_SNP [dm3] 3L_2374138_SNP [dm6]	A	G	3.913e^-4	1	NON_SYNONYMOUS_CODING CG9004 UPSTREAM mRpL23	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
X	14162063	X_14162063_SNP [dm3] X_14268030_SNP [dm6]	T	C	3.919e^-4	1	SYNONYMOUS_CODING na	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	4589607	2L_4589607_SNP [dm3] 2L_4589607_SNP [dm6]	C	T	3.926e^-4	1	INTRON dp
2L	2122016	2L_2122016_SNP [dm3] 2L_2122016_SNP [dm6]	T	C	3.926e^-4	1	INTERGENIC
3L	3595354	3L_3595354_SNP [dm3] 3L_3595354_SNP [dm6]	A	C	3.928e^-4	1	INTRON Eip63E
X	6118767	X_6118767_SNP [dm3] X_6224734_SNP [dm6]	A	C	3.932e^-4	1	UTR_5_PRIME sqh UPSTREAM sqh & 1 other INTRON sqh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	18525995	3R_18525995_SNP [dm3] 3R_22700273_SNP [dm6]	T	C	3.940e^-4	1	UTR_3_PRIME Cyp6d4 DOWNSTREAM CCAP
3R	18852335	3R_18852335_SNP [dm3] 3R_23026613_SNP [dm6]	A	G	3.943e^-4	1	UTR_5_PRIME lmd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	1444855	2L_1444855_SNP [dm3] 2L_1444855_SNP [dm6]	A	C	3.945e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20306890	3R_20306890_SNP [dm3] 3R_24481168_SNP [dm6]	T	C	3.967e^-4	1	INTERGENIC
2R	19085324	2R_19085324_SNP [dm3] 2R_23197801_SNP [dm6]	G	C	3.969e^-4	1	INTRON CG34371
2R	11733979	2R_11733979_SNP [dm3] 2R_15846474_SNP [dm6]	G	A	3.978e^-4	1	INTRON tun & 1 other
2R	17561194	2R_17561194_SNP [dm3] 2R_21673689_SNP [dm6]	G	C	3.986e^-4	1	DOWNSTREAM CG15676 INTERGENIC
3L	3687455	3L_3687455_SNP [dm3] 3L_3687455_SNP [dm6]	G	A	3.988e^-4	1	INTERGENIC
2R	10866938	2R_10866938_SNP [dm3] 2R_14979433_SNP [dm6]	A	G	3.990e^-4	1	SYNONYMOUS_CODING ckn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
3R	13345176	3R_13345176_SNP [dm3] 3R_17519454_SNP [dm6]	A	C	3.992e^-4	1	UPSTREAM CR44349 INTERGENIC
2R	12142118	2R_12142118_SNP [dm3] 2R_16254613_SNP [dm6]	G	C	3.994e^-4	1	NON_SYNONYMOUS_CODING CngA
X	1453996	X_1453996_SNP [dm3] X_1559963_SNP [dm6]	T	A	3.995e^-4	1	INTRON Mur2B
3L	8147201	3L_8147201_SNP [dm3] 3L_8154101_SNP [dm6]	A	T	3.999e^-4	1	DOWNSTREAM CG42445 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24891864	3R_24891864_INS [dm3] 3R_29066142_INS [dm6]	A	GTTT	4.027e^-4	1	INTRON CG11873	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	2538015	3L_2538015_SNP [dm3] 3L_2538015_SNP [dm6]	G	C	4.032e^-4	1	INTRON Spn
X	18186159	X_18186159_SNP [dm3] X_18292126_SNP [dm6]	G	A	4.033e^-4	1	UPSTREAM CR15061 INTERGENIC
2L	9350610	2L_9350610_SNP [dm3] 2L_9350610_SNP [dm6]	G	C	4.033e^-4	1	SYNONYMOUS_CODING CG13110 DOWNSTREAM CG43350
2R	954990	2R_954990_SNP [dm3] 2R_5067485_SNP [dm6]	A	G	4.039e^-4	1	INTRON TpnC41C
3L	5141391	3L_5141391_SNP [dm3] 3L_5148291_SNP [dm6]	C	T	4.042e^-4	1	NON_SYNONYMOUS_CODING Aats-ala-m	TF binding site mE1_TFBS_chinmo
X	12833599	X_12833599_SNP [dm3] X_12939566_SNP [dm6]	T	G	4.044e^-4	1	INTRON fne	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	599191	2R_599191_SNP [dm3] 2R_4711686_SNP [dm6]	A	T	4.049e^-4	1	INTRON Nipped-B
3L	17139926	3L_17139926_INS [dm3] 3L_17146826_INS [dm6]	T	TATATAT	4.051e^-4	1	INTRON Rbp6
X	6640130	X_6640130_SNP [dm3] X_6746097_SNP [dm6]	T	G	4.057e^-4	1	DOWNSTREAM CR44964 EXON CR44895
3R	20331824	3R_20331824_SNP [dm3] 3R_24506102_SNP [dm6]	C	A	4.068e^-4	1	INTERGENIC
3L	4799068	3L_4799068_SNP [dm3] 3L_4799068_SNP [dm6]	C	A	4.083e^-4	1	UPSTREAM CR45740 INTERGENIC
3L	13464324	3L_13464324_SNP [dm3] 3L_13471224_SNP [dm6]	C	A	4.086e^-4	1	INTRON CG10089
2L	6197945	2L_6197945_SNP [dm3] 2L_6197945_SNP [dm6]	T	G	4.086e^-4	1	INTRON CG34380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2017453	2L_2017453_SNP [dm3] 2L_2017453_SNP [dm6]	A	G	4.090e^-4	1	UPSTREAM CG4238 INTRON CG4238
2L	16473679	2L_16473679_SNP [dm3] 2L_16473679_SNP [dm6]	C	G	4.097e^-4	1	INTRON dac
3L	15677591	3L_15677591_SNP [dm3] 3L_15684491_SNP [dm6]	T	C	4.106e^-4	1	INTRON pgant8
2R	13219274	2R_13219274_SNP [dm3] 2R_17331769_SNP [dm6]	A	G	4.107e^-4	1	INTRON mbl	TF binding site BDTNP1_TFBS_prd
3L	17721049	3L_17721049_SNP [dm3] 3L_17727949_SNP [dm6]	A	G	4.108e^-4	1	SYNONYMOUS_CODING CG6052 INTRON Ccn	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	7611930	3L_7611930_SNP [dm3] 3L_7618830_SNP [dm6]	G	A	4.120e^-4	1	INTRON CG33275
3R	10250977	3R_10250977_SNP [dm3] 3R_14425255_SNP [dm6]	A	G	4.128e^-4	1	INTRON cv-c
2L	14595948	2L_14595948_SNP [dm3] 2L_14595948_SNP [dm6]	A	C	4.130e^-4	1	INTERGENIC
2L	2241897	2L_2241897_SNP [dm3] 2L_2241897_SNP [dm6]	T	A	4.132e^-4	1	UPSTREAM CG4267 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	900505	2R_900505_SNP [dm3] 2R_5013000_SNP [dm6]	A	G	4.133e^-4	1	INTRON Ir41a	transposable element FlyBase
3R	13363712	3R_13363712_SNP [dm3] 3R_17537990_SNP [dm6]	C	T	4.139e^-4	1	NON_SYNONYMOUS_CODING l_3_07882 DOWNSTREAM P5cr-2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18833160	3R_18833160_SNP [dm3] 3R_23007438_SNP [dm6]	G	A	4.141e^-4	1	INTRON CG34375
2L	11427600	2L_11427600_SNP [dm3] 2L_11427600_SNP [dm6]	A	T	4.141e^-4	1	INTERGENIC
2R	528311	2R_528311_SNP [dm3] 2R_4640806_SNP [dm6]	T	C	4.142e^-4	1	INTERGENIC	transposable element FlyBase
2R	13985940	2R_13985940_SNP [dm3] 2R_18098435_SNP [dm6]	T	C	4.143e^-4	1	SYNONYMOUS_CODING CG5098
2R	10569670	2R_10569670_SNP [dm3] 2R_14682165_SNP [dm6]	T	C	4.146e^-4	1	INTRON mspo
3L	7591863	3L_7591863_INS [dm3] 3L_7598763_INS [dm6]	A	AATAAAAA	4.146e^-4	1	INTRON CG33275	TF binding site mE1_TFBS_inv
2L	2081486	2L_2081486_SNP [dm3] 2L_2081486_SNP [dm6]	G	A	4.148e^-4	1	UPSTREAM CR44808 DOWNSTREAM CG12674 INTRON dpr3
X	3396415	X_3396415_DEL [dm3] X_3502382_DEL [dm6]	CC	C	4.165e^-4	1	INTRON CR44999 & 1 other
3R	25857936	3R_25857936_DEL [dm3] 3R_30032214_DEL [dm6]	CATAGTTAAACTTTCTTTAG...	C	4.171e^-4	1	INTRON Axn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	12478440	3L_12478440_SNP [dm3] 3L_12485340_SNP [dm6]	A	G	4.177e^-4	1	UPSTREAM CG33725 & 1 other INTRON CG33725	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14680667	3L_14680667_SNP [dm3] 3L_14687567_SNP [dm6]	A	T	4.183e^-4	1	INTRON ome
3R	25808904	3R_25808904_SNP [dm3] 3R_29983182_SNP [dm6]	T	A	4.186e^-4	1	UPSTREAM CG7896 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	7988659	X_7988659_SNP [dm3] X_8094626_SNP [dm6]	T	A	4.213e^-4	1	UTR_3_PRIME CG2258 UPSTREAM Ubc-E2H	TF binding site mE1_TFBS_HSA
3L	14678788	3L_14678788_SNP [dm3] 3L_14685688_SNP [dm6]	C	T	4.220e^-4	1	UTR_3_PRIME CG5048 INTRON ome
3R	25808911	3R_25808911_SNP [dm3] 3R_29983189_SNP [dm6]	A	C	4.220e^-4	1	UPSTREAM CG7896 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	3687470	3L_3687470_SNP [dm3] 3L_3687470_SNP [dm6]	A	T	4.245e^-4	1	INTERGENIC
3L	22522264	3L_22522264_SNP [dm3] 3L_22529164_SNP [dm6]	C	T	4.245e^-4	1	INTERGENIC
3R	4162069	3R_4162069_SNP [dm3] 3R_8336347_SNP [dm6]	T	G	4.246e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	19229719	3L_19229719_SNP [dm3] 3L_19236619_SNP [dm6]	C	T	4.253e^-4	1	SYNONYMOUS_CODING CG33647
3R	17966174	3R_17966174_SNP [dm3] 3R_22140452_SNP [dm6]	A	C	4.259e^-4	1	INTRON SKIP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10422912	3L_10422912_SNP [dm3] 3L_10429812_SNP [dm6]	A	G	4.267e^-4	1	UTR_3_PRIME Ir67b
2L	7227696	2L_7227696_SNP [dm3] 2L_7227696_SNP [dm6]	A	T	4.281e^-4	1	UPSTREAM CG43799 INTRON Ndae1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	10207864	2L_10207864_SNP [dm3] 2L_10207864_SNP [dm6]	C	T	4.284e^-4	1	SPLICE_SITE_REGION CG5731 UPSTREAM CG5734 & 1 other INTRON CG5731
2R	2636649	2R_2636649_SNP [dm3] 2R_6749144_SNP [dm6]	A	T	4.289e^-4	1	UPSTREAM Eb1 DOWNSTREAM CG3267 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_Trl
3L	16863688	3L_16863688_SNP [dm3] 3L_16870588_SNP [dm6]	C	T	4.292e^-4	1	INTRON Lmpt
2R	12411482	2R_12411482_SNP [dm3] 2R_16523977_SNP [dm6]	A	T	4.293e^-4	1	INTRON Sema-2a
2L	6814092	2L_6814092_SNP [dm3] 2L_6814092_SNP [dm6]	C	A	4.294e^-4	1	DOWNSTREAM CR44081 INTERGENIC
3L	1371490	3L_1371490_SNP [dm3] 3L_1371490_SNP [dm6]	T	G	4.305e^-4	1	INTRON Ptp61F & 1 other
3L	902848	3L_902848_SNP [dm3] 3L_902848_SNP [dm6]	C	G	4.308e^-4	1	UPSTREAM CG13905 INTERGENIC	TF binding site mE1_TFBS_sens
3L	15139292	3L_15139292_SNP [dm3] 3L_15146192_SNP [dm6]	G	A	4.308e^-4	1	UTR_3_PRIME Pex3 UPSTREAM FucTA DOWNSTREAM Pex3
2L	11094957	2L_11094957_SNP [dm3] 2L_11094957_SNP [dm6]	A	T	4.310e^-4	1	UTR_3_PRIME CG4705 DOWNSTREAM Ge-1
3L	10387255	3L_10387255_SNP [dm3] 3L_10394155_SNP [dm6]	C	G	4.310e^-4	1	INTERGENIC
3L	9316068	3L_9316068_SNP [dm3] 3L_9322968_SNP [dm6]	T	A	4.310e^-4	1	INTERGENIC
3L	12662156	3L_12662156_SNP [dm3] 3L_12669056_SNP [dm6]	A	G	4.310e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14677983	3L_14677983_SNP [dm3] 3L_14684883_SNP [dm6]	T	C	4.326e^-4	1	UTR_5_PRIME CG5048 INTRON ome
3L	1581831	3L_1581831_INS [dm3] 3L_1581831_INS [dm6]	A	ACATA	4.330e^-4	1	INTRON CG13917
3L	7578767	3L_7578767_SNP [dm3] 3L_7585667_SNP [dm6]	C	G	4.332e^-4	1	SYNONYMOUS_CODING CG14838	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	12013601	3R_12013601_SNP [dm3] 3R_16187879_SNP [dm6]	A	C	4.338e^-4	1	UPSTREAM Bin1 INTRON sra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	10913947	3R_10913947_SNP [dm3] 3R_15088225_SNP [dm6]	C	T	4.339e^-4	1	INTRON CG6966
2L	14603752	2L_14603752_SNP [dm3] 2L_14603752_SNP [dm6]	G	A	4.344e^-4	1	SYNONYMOUS_CODING osp	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14042320	3R_14042320_SNP [dm3] 3R_18216598_SNP [dm6]	T	A	4.345e^-4	1	SYNONYMOUS_CODING CG14314	TF binding site mE1_TFBS_cad
3L	16723655	3L_16723655_SNP [dm3] 3L_16730555_SNP [dm6]	C	T	4.355e^-4	1	SYNONYMOUS_CODING Dbp73D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19598783	2L_19598783_SNP [dm3] 2L_19598783_SNP [dm6]	C	T	4.359e^-4	1	INTRON Lar
3R	26617801	3R_26617801_SNP [dm3] 3R_30792079_SNP [dm6]	G	A	4.365e^-4	1	SYNONYMOUS_CODING wts UPSTREAM mir-1013	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10563368	2R_10563368_SNP [dm3] 2R_14675863_SNP [dm6]	A	G	4.369e^-4	1	SYNONYMOUS_CODING CG30480 UTR_5_PRIME CG30479 UPSTREAM CG30479 INTRON mspo	TF binding site mE1_TFBS_sens
3L	4445634	3L_4445634_SNP [dm3] 3L_4445634_SNP [dm6]	G	A	4.375e^-4	1	UPSTREAM CG12607 DOWNSTREAM CR45739 INTERGENIC
3R	18526020	3R_18526020_INS [dm3] 3R_22700298_INS [dm6]	A	AA	4.390e^-4	1	UTR_3_PRIME Cyp6d4 DOWNSTREAM CCAP
X	12303935	X_12303935_SNP [dm3] X_12409902_SNP [dm6]	A	C	4.392e^-4	1	DOWNSTREAM CG2574 INTERGENIC
2L	8176871	2L_8176871_SNP [dm3] 2L_8176871_SNP [dm6]	G	T	4.395e^-4	1	SPLICE_SITE_REGION Piezo INTRON Piezo
3R	20271639	3R_20271639_SNP [dm3] 3R_24445917_SNP [dm6]	C	T	4.399e^-4	1	INTRON nAChRalpha1
2L	14483962	2L_14483962_SNP [dm3] 2L_14483962_SNP [dm6]	G	A	4.409e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10422928	3L_10422928_DEL [dm3] 3L_10429828_DEL [dm6]	AA	A	4.409e^-4	1	UTR_3_PRIME Ir67b
3L	13546003	3L_13546003_SNP [dm3] 3L_13552903_SNP [dm6]	G	A	4.428e^-4	1	INTRON bru-3
3R	18163851	3R_18163851_SNP [dm3] 3R_22338129_SNP [dm6]	C	A	4.431e^-4	1	INTRON CG5388
3R	10223284	3R_10223284_SNP [dm3] 3R_14397562_SNP [dm6]	A	T	4.438e^-4	1	INTRON cv-c
3L	14680169	3L_14680169_SNP [dm3] 3L_14687069_SNP [dm6]	C	A	4.440e^-4	1	INTRON ome
3L	13732771	3L_13732771_SNP [dm3] 3L_13739671_SNP [dm6]	A	G	4.440e^-4	1	INTRON bru-3
3R	22582111	3R_22582111_SNP [dm3] 3R_26756389_SNP [dm6]	G	T	4.443e^-4	1	DOWNSTREAM CR45562 INTERGENIC
2R	12074534	2R_12074534_SNP [dm3] 2R_16187029_SNP [dm6]	C	T	4.443e^-4	1	NON_SYNONYMOUS_CODING clu UPSTREAM CG8441 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12074657	2R_12074657_SNP [dm3] 2R_16187152_SNP [dm6]	C	T	4.456e^-4	1	UPSTREAM CG8441 & 1 other INTRON clu	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10875874	2R_10875874_SNP [dm3] 2R_14988369_SNP [dm6]	A	G	4.468e^-4	1	SYNONYMOUS_CODING CG7639 INTRON pcs
X	3324626	X_3324626_SNP [dm3] X_3430593_SNP [dm6]	G	T	4.480e^-4	1	INTRON CR44999 & 1 other
X	10610111	X_10610111_SNP [dm3] X_10716078_SNP [dm6]	G	A	4.483e^-4	1	SYNONYMOUS_CODING CG32676	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	15643815	X_15643815_SNP [dm3] X_15749782_SNP [dm6]	G	A	4.484e^-4	1	DOWNSTREAM Tcp-1zeta INTRON CG8239
3R	14523221	3R_14523221_SNP [dm3] 3R_18697499_SNP [dm6]	G	A	4.487e^-4	1	INTERGENIC
2L	7572507	2L_7572507_SNP [dm3] 2L_7572507_SNP [dm6]	A	G	4.492e^-4	1	INTRON RapGAP1
3R	16307019	3R_16307019_SNP [dm3] 3R_20481297_SNP [dm6]	A	G	4.493e^-4	1	UTR_5_PRIME Gfrl INTRON Gfrl
X	12380426	X_12380426_SNP [dm3] X_12486393_SNP [dm6]	C	T	4.495e^-4	1	UPSTREAM Cpr11A INTERGENIC
2L	7746376	2L_7746376_INS [dm3] 2L_7746376_INS [dm6]	C	CA	4.497e^-4	1	UPSTREAM CG7211 INTERGENIC
3R	2330549	3R_2330549_SNP [dm3] 3R_6504827_SNP [dm6]	G	A	4.510e^-4	1	INTERGENIC
3L	7574927	3L_7574927_SNP [dm3] 3L_7581827_SNP [dm6]	T	A	4.516e^-4	1	INTERGENIC
3L	17458394	3L_17458394_SNP [dm3] 3L_17465294_SNP [dm6]	A	G	4.516e^-4	1	UPSTREAM CG7603 INTERGENIC
2R	14490433	2R_14490433_SNP [dm3] 2R_18602928_SNP [dm6]	G	A	4.522e^-4	1	INTRON GEFmeso
2R	5153712	2R_5153712_SNP [dm3] 2R_9266207_SNP [dm6]	G	T	4.526e^-4	1	INTRON Pkn
X	7584081	X_7584081_SNP [dm3] X_7690048_SNP [dm6]	A	C	4.530e^-4	1	INTRON CHES-1-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	11813852	2L_11813852_SNP [dm3] 2L_11813852_SNP [dm6]	G	T	4.535e^-4	1	UPSTREAM CycY DOWNSTREAM Pde1c INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	6750775	2R_6750775_SNP [dm3] 2R_10863270_SNP [dm6]	A	T	4.549e^-4	1	INTRON CG30015
3L	11197495	3L_11197495_SNP [dm3] 3L_11204395_SNP [dm6]	T	C	4.559e^-4	1	INTRON Plod
2L	7576820	2L_7576820_SNP [dm3] 2L_7576820_SNP [dm6]	T	A	4.570e^-4	1	UPSTREAM RapGAP1 INTRON RapGAP1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	305826	2L_305826_SNP [dm3] 2L_305826_SNP [dm6]	C	G	4.571e^-4	1	UPSTREAM Plc21C DOWNSTREAM Pi3K21B INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	4332182	2L_4332182_SNP [dm3] 2L_4332182_SNP [dm6]	G	A	4.572e^-4	1	DOWNSTREAM CG16857 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_Trl
3R	20328021	3R_20328021_SNP [dm3] 3R_24502299_SNP [dm6]	G	C	4.576e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
3L	5548945	3L_5548945_SNP [dm3] 3L_5555845_SNP [dm6]	G	T	4.580e^-4	1	INTERGENIC
3R	13388825	3R_13388825_SNP [dm3] 3R_17563103_SNP [dm6]	C	G	4.592e^-4	1	INTRON Hmx
2R	12586892	2R_12586892_SNP [dm3] 2R_16699387_SNP [dm6]	A	G	4.599e^-4	1	SYNONYMOUS_CODING CG30463
3R	15823091	3R_15823091_SNP [dm3] 3R_19997369_SNP [dm6]	A	T	4.599e^-4	1	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1913074	2L_1913074_DEL [dm3] 2L_1913074_DEL [dm6]	AAA	A	4.607e^-4	1	INTRON CG7337
2L	11939433	2L_11939433_SNP [dm3] 2L_11939433_SNP [dm6]	C	T	4.609e^-4	1	DOWNSTREAM Or33c INTERGENIC
X	3531232	X_3531232_SNP [dm3] X_3637199_SNP [dm6]	T	C	4.613e^-4	1	INTRON AstA-R1
3L	6956149	3L_6956149_SNP [dm3] 3L_6963049_SNP [dm6]	A	G	4.629e^-4	1	INTRON sgl	TF binding site BDTNP1_TFBS_dl
2L	6198187	2L_6198187_SNP [dm3] 2L_6198187_SNP [dm6]	A	G	4.631e^-4	1	INTRON CG34380	TF binding site BDTNP1_TFBS_twi
X	12380968	X_12380968_SNP [dm3] X_12486935_SNP [dm6]	G	T	4.631e^-4	1	UPSTREAM Cpr11A INTERGENIC
2L	1266627	2L_1266627_SNP [dm3] 2L_1266627_SNP [dm6]	T	C	4.634e^-4	1	INTRON robo3
3L	3875314	3L_3875314_SNP [dm3] 3L_3875314_SNP [dm6]	C	T	4.634e^-4	1	INTERGENIC
2L	7728381	2L_7728381_SNP [dm3] 2L_7728381_SNP [dm6]	G	A	4.637e^-4	1	SYNONYMOUS_CODING CG13796
2R	7735801	2R_7735801_SNP [dm3] 2R_11848296_SNP [dm6]	C	A	4.641e^-4	1	INTRON Sln
3L	21773608	3L_21773608_SNP [dm3] 3L_21780508_SNP [dm6]	G	A	4.642e^-4	1	INTERGENIC
3L	3655635	3L_3655635_SNP [dm3] 3L_3655635_SNP [dm6]	G	A	4.648e^-4	1	UPSTREAM CG10862 INTERGENIC
3L	7578851	3L_7578851_SNP [dm3] 3L_7585751_SNP [dm6]	T	C	4.660e^-4	1	SYNONYMOUS_CODING CG14838
3R	18157915	3R_18157915_SNP [dm3] 3R_22332193_SNP [dm6]	G	T	4.663e^-4	1	NON_SYNONYMOUS_CODING CG13862 DOWNSTREAM CG33721 & 1 other	TF binding site mE1_TFBS_inv
2R	12871802	2R_12871802_SNP [dm3] 2R_16984297_SNP [dm6]	G	A	4.675e^-4	1	UTR_5_PRIME Cbp53E
3L	15677592	3L_15677592_SNP [dm3] 3L_15684492_SNP [dm6]	A	T	4.685e^-4	1	INTRON pgant8
3L	3661670	3L_3661670_DEL [dm3] 3L_3661670_DEL [dm6]	TCCT	T	4.690e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13413998	3R_13413998_SNP [dm3] 3R_17588276_SNP [dm6]	T	C	4.693e^-4	1	INTERGENIC
3R	12688685	3R_12688685_SNP [dm3] 3R_16862963_SNP [dm6]	A	C	4.694e^-4	1	INTRON iab-8	TF binding site mE1_TFBS_cad
3L	16723588	3L_16723588_SNP [dm3] 3L_16730488_SNP [dm6]	A	C	4.697e^-4	1	NON_SYNONYMOUS_CODING Dbp73D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9050025	2L_9050025_SNP [dm3] 2L_9050025_SNP [dm6]	A	G	4.698e^-4	1	INTERGENIC
3L	4797773	3L_4797773_SNP [dm3] 3L_4797773_SNP [dm6]	G	A	4.707e^-4	1	INTERGENIC
3L	8602895	3L_8602895_DEL [dm3] 3L_8609795_DEL [dm6]	AA	A	4.728e^-4	1	UTR_5_PRIME CG6282	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	11496671	3R_11496671_SNP [dm3] 3R_15670949_SNP [dm6]	G	A	4.729e^-4	1	INTRON pxb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	6790421	X_6790421_INS [dm3] X_6896388_INS [dm6]	T	TG	4.734e^-4	1	INTERGENIC
2L	9028440	2L_9028440_SNP [dm3] 2L_9028440_SNP [dm6]	C	A	4.738e^-4	1	INTRON CG9582 & 1 other
X	3224667	X_3224667_SNP [dm3] X_3330634_SNP [dm6]	G	A	4.745e^-4	1	INTRON CR44886 & 1 other
2L	17700706	2L_17700706_SNP [dm3] 2L_17700706_SNP [dm6]	C	T	4.758e^-4	1	INTRON CadN
2R	15051507	2R_15051507_SNP [dm3] 2R_19164002_SNP [dm6]	T	C	4.758e^-4	1	UPSTREAM CG10737 DOWNSTREAM ena INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	17522729	3R_17522729_SNP [dm3] 3R_21697007_SNP [dm6]	A	C	4.765e^-4	1	INTRON CG31176
2L	9032331	2L_9032331_SNP [dm3] 2L_9032331_SNP [dm6]	G	T	4.769e^-4	1	UPSTREAM CG9582 & 1 other INTERGENIC
3R	16349733	3R_16349733_SNP [dm3] 3R_20524011_SNP [dm6]	G	A	4.775e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
2L	14609651	2L_14609651_SNP [dm3] 2L_14609651_SNP [dm6]	A	T	4.776e^-4	1	INTRON osp
2L	12225386	2L_12225386_SNP [dm3] 2L_12225386_SNP [dm6]	A	G	4.784e^-4	1	INTRON aret
X	2417282	X_2417282_SNP [dm3] X_2523249_SNP [dm6]	G	C	4.801e^-4	1	INTRON trol
3R	24927105	3R_24927105_SNP [dm3] 3R_29101383_SNP [dm6]	G	C	4.801e^-4	1	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11123258	3L_11123258_SNP [dm3] 3L_11130158_SNP [dm6]	T	C	4.802e^-4	1	SYNONYMOUS_CODING CG42575 UPSTREAM nol	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	2292315	2L_2292315_SNP [dm3] 2L_2292315_SNP [dm6]	A	G	4.809e^-4	1	INTERGENIC
3L	10697136	3L_10697136_DEL [dm3] 3L_10704036_DEL [dm6]	TT	T	4.809e^-4	1	INTERGENIC
X	14861387	X_14861387_SNP [dm3] X_14967354_SNP [dm6]	T	A	4.810e^-4	1	INTRON eag
3L	19174574	3L_19174574_SNP [dm3] 3L_19181474_SNP [dm6]	C	T	4.815e^-4	1	INTRON fz2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	15284489	2L_15284489_SNP [dm3] 2L_15284489_SNP [dm6]	A	T	4.816e^-4	1	UPSTREAM CG15263 INTERGENIC
3L	15713928	3L_15713928_SNP [dm3] 3L_15720828_SNP [dm6]	C	T	4.829e^-4	1	DOWNSTREAM CG42570 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	9389091	3L_9389091_DEL [dm3] 3L_9395991_DEL [dm6]	TT	T	4.836e^-4	1	INTRON CG4080	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14929788	2L_14929788_SNP [dm3] 2L_14929788_SNP [dm6]	C	A	4.839e^-4	1	SYNONYMOUS_CODING CG3491 INTRON CG42313
3R	22873334	3R_22873334_SNP [dm3] 3R_27047612_SNP [dm6]	A	T	4.845e^-4	1	INTRON RYa-R
3R	17932672	3R_17932672_SNP [dm3] 3R_22106950_SNP [dm6]	A	G	4.858e^-4	1	INTRON CG5778
X	9515514	X_9515514_SNP [dm3] X_9621481_SNP [dm6]	C	T	4.890e^-4	1	SYNONYMOUS_CODING CG42797	TF binding site mE1_TFBS_sens
2L	9508430	2L_9508430_SNP [dm3] 2L_9508430_SNP [dm6]	C	T	4.896e^-4	1	INTRON CG33298	TF binding site BDTNP1_TFBS_hb
2L	7193122	2L_7193122_SNP [dm3] 2L_7193122_SNP [dm6]	C	T	4.915e^-4	1	NON_SYNONYMOUS_CODING CG4497	TF binding site mE1_TFBS_sens
3L	3657004	3L_3657004_SNP [dm3] 3L_3657004_SNP [dm6]	A	T	4.934e^-4	1	INTERGENIC
X	1454038	X_1454038_SNP [dm3] X_1560005_SNP [dm6]	G	T	4.943e^-4	1	INTRON Mur2B
2L	14604841	2L_14604841_SNP [dm3] 2L_14604841_SNP [dm6]	T	C	4.954e^-4	1	SYNONYMOUS_CODING osp	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	15139351	3L_15139351_SNP [dm3] 3L_15146251_SNP [dm6]	T	A	4.954e^-4	1	UTR_3_PRIME Pex3 UPSTREAM FucTA DOWNSTREAM Pex3	TF binding site BDTNP1_TFBS_dl
2L	827618	2L_827618_INS [dm3] 2L_827618_INS [dm6]	A	ATTAGTCATGTTTTCAGGCA...	4.959e^-4	1	INTRON dock	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	5981894	2R_5981894_SNP [dm3] 2R_10094389_SNP [dm6]	A	C	4.964e^-4	1	SYNONYMOUS_CODING CG2269	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14510703	2R_14510703_SNP [dm3] 2R_18623198_SNP [dm6]	C	T	4.975e^-4	1	DOWNSTREAM CG5335 INTRON Atg7
2L	11939434	2L_11939434_SNP [dm3] 2L_11939434_SNP [dm6]	A	G	4.979e^-4	1	DOWNSTREAM Or33c INTERGENIC
2R	11021106	2R_11021106_SNP [dm3] 2R_15133601_SNP [dm6]	G	A	4.993e^-4	1	INTRON chn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	22248593	3L_22248593_SNP [dm3] 3L_22255493_SNP [dm6]	A	G	4.993e^-4	1	INTERGENIC
2L	10074329	2L_10074329_SNP [dm3] 2L_10074329_SNP [dm6]	T	C	4.994e^-4	1	INTRON CG44153
2L	11428393	2L_11428393_SNP [dm3] 2L_11428393_SNP [dm6]	G	C	4.994e^-4	1	INTERGENIC
2L	14637743	2L_14637743_SNP [dm3] 2L_14637743_SNP [dm6]	G	T	4.997e^-4	1	INTRON osp
3L	10387393	3L_10387393_INS [dm3] 3L_10394293_INS [dm6]	T	TG	5.004e^-4	1	INTERGENIC
3R	17966321	3R_17966321_SNP [dm3] 3R_22140599_SNP [dm6]	T	A	5.026e^-4	1	INTRON SKIP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	24766241	3R_24766241_SNP [dm3] 3R_28940519_SNP [dm6]	C	T	5.040e^-4	1	INTRON CG14521	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10387172	3L_10387172_SNP [dm3] 3L_10394072_SNP [dm6]	G	T	5.045e^-4	1	INTERGENIC
3L	15676416	3L_15676416_SNP [dm3] 3L_15683316_SNP [dm6]	T	A	5.058e^-4	1	UTR_5_PRIME CG7579 UPSTREAM pgant8
3L	14494784	3L_14494784_DEL [dm3] 3L_14501684_DEL [dm6]	ACTAGAAAGGTCAA...	A	5.061e^-4	1	INTRON bbg	TF binding site BDTNP1_TFBS_prd
3L	15623456	3L_15623456_SNP [dm3] 3L_15630356_SNP [dm6]	C	A	5.063e^-4	1	INTRON comm3
2R	11021395	2R_11021395_INS [dm3] 2R_15133890_INS [dm6]	C	CC	5.067e^-4	1	INTRON chn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	9022106	2L_9022106_SNP [dm3] 2L_9022106_SNP [dm6]	G	C	5.068e^-4	1	INTERGENIC
3R	25149296	3R_25149296_SNP [dm3] 3R_29323574_SNP [dm6]	G	A	5.073e^-4	1	INTERGENIC
3R	20370944	3R_20370944_DEL [dm3] 3R_24545222_DEL [dm6]	CGC	C	5.074e^-4	1	INTRON Esyt2	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	7492628	3R_7492628_SNP [dm3] 3R_11666906_SNP [dm6]	C	T	5.075e^-4	1	INTRON CG42327
3L	14643933	3L_14643933_SNP [dm3] 3L_14650833_SNP [dm6]	A	T	5.092e^-4	1	INTRON dlp	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cnc mE1_TFBS_HSA
2L	7227947	2L_7227947_SNP [dm3] 2L_7227947_SNP [dm6]	T	C	5.093e^-4	1	NON_SYNONYMOUS_CODING CG43799 INTRON Ndae1
3L	17370072	3L_17370072_INS [dm3] 3L_17376972_INS [dm6]	A	AA	5.099e^-4	1	INTRON Cad74A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	12228658	2L_12228658_INS [dm3] 2L_12228658_INS [dm6]	A	AAA	5.102e^-4	1	INTRON aret
3L	2363001	3L_2363001_SNP [dm3] 3L_2363001_SNP [dm6]	G	A	5.104e^-4	1	DOWNSTREAM CG13801 INTERGENIC
3L	3887777	3L_3887777_SNP [dm3] 3L_3887777_SNP [dm6]	C	T	5.110e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	993314	2L_993314_SNP [dm3] 2L_993314_SNP [dm6]	T	C	5.120e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	19330293	3R_19330293_SNP [dm3] 3R_23504571_SNP [dm6]	C	A	5.127e^-4	1	INTERGENIC
X	12799498	X_12799498_SNP [dm3] X_12905465_SNP [dm6]	C	A	5.130e^-4	1	INTRON CG4404	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	13083997	2R_13083997_SNP [dm3] 2R_17196492_SNP [dm6]	T	C	5.137e^-4	1	SYNONYMOUS_CODING CG10950
3L	8147459	3L_8147459_SNP [dm3] 3L_8154359_SNP [dm6]	T	G	5.148e^-4	1	DOWNSTREAM CG42445 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12078160	2L_12078160_SNP [dm3] 2L_12078160_SNP [dm6]	T	C	5.149e^-4	1	DOWNSTREAM CG14947 INTERGENIC	regulatory region REDfly_CRMs
3R	18159564	3R_18159564_SNP [dm3] 3R_22333842_SNP [dm6]	T	A	5.154e^-4	1	DOWNSTREAM CG5388 INTRON CG5391
3R	26332390	3R_26332390_SNP [dm3] 3R_30506668_SNP [dm6]	G	A	5.157e^-4	1	SYNONYMOUS_CODING CG15539 UPSTREAM mir-4908
2L	7500989	2L_7500989_SNP [dm3] 2L_7500989_SNP [dm6]	T	A	5.157e^-4	1	SYNONYMOUS_CODING RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	2544148	2L_2544148_SNP [dm3] 2L_2544148_SNP [dm6]	T	A	5.160e^-4	1	INTERGENIC
3L	7549854	3L_7549854_SNP [dm3] 3L_7556754_SNP [dm6]	T	G	5.166e^-4	1	NON_SYNONYMOUS_CODING CG14837	TF binding site mE1_TFBS_sens
2R	13052882	2R_13052882_SNP [dm3] 2R_17165377_SNP [dm6]	C	T	5.167e^-4	1	UTR_3_PRIME CG10953 DOWNSTREAM CG10953
3R	15136581	3R_15136581_SNP [dm3] 3R_19310859_SNP [dm6]	C	T	5.170e^-4	1	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	18405808	X_18405808_SNP [dm3] X_18511775_SNP [dm6]	C	A	5.170e^-4	1	INTRON Ggt-1
3R	16492424	3R_16492424_SNP [dm3] 3R_20666702_SNP [dm6]	G	A	5.172e^-4	1	INTERGENIC
2L	14595754	2L_14595754_SNP [dm3] 2L_14595754_SNP [dm6]	C	T	5.187e^-4	1	INTERGENIC
3L	5140670	3L_5140670_SNP [dm3] 3L_5147570_SNP [dm6]	T	C	5.213e^-4	1	SYNONYMOUS_CODING Aats-ala-m	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10445394	3L_10445394_SNP [dm3] 3L_10452294_SNP [dm6]	G	A	5.213e^-4	1	INTERGENIC
2R	12670509	2R_12670509_SNP [dm3] 2R_16783004_SNP [dm6]	C	A	5.214e^-4	1	UTR_3_PRIME resilin UPSTREAM CG5522	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14609393	2L_14609393_SNP [dm3] 2L_14609393_SNP [dm6]	A	G	5.215e^-4	1	INTRON osp
3L	22248852	3L_22248852_INS [dm3] 3L_22255752_INS [dm6]	G	GACTTAGTG	5.219e^-4	1	INTERGENIC
3L	17693685	3L_17693685_SNP [dm3] 3L_17700585_SNP [dm6]	G	A	5.220e^-4	1	INTRON Ccn
X	20476269	X_20476269_SNP [dm3] X_20605242_SNP [dm6]	C	T	5.225e^-4	1	INTRON RunxA
3L	15212959	3L_15212959_SNP [dm3] 3L_15219859_SNP [dm6]	A	T	5.228e^-4	1	INTERGENIC
3L	19166865	3L_19166865_DEL [dm3] 3L_19173765_DEL [dm6]	TTAAAGACATCCCATAACAG...	CAATGG	5.230e^-4	1	INTRON fz2
2L	13485548	2L_13485548_SNP [dm3] 2L_13485548_SNP [dm6]	A	G	5.231e^-4	1	INTRON CG42784
3R	3564604	3R_3564604_SNP [dm3] 3R_7738882_SNP [dm6]	T	G	5.235e^-4	1	DOWNSTREAM CG43254 INTERGENIC
3R	3741766	3R_3741766_SNP [dm3] 3R_7916044_SNP [dm6]	A	T	5.236e^-4	1	NON_SYNONYMOUS_CODING CG2678 UTR_3_PRIME CG2678 DOWNSTREAM CG10445
3L	2525441	3L_2525441_SNP [dm3] 3L_2525441_SNP [dm6]	C	G	5.239e^-4	1	SYNONYMOUS_CODING Spn DOWNSTREAM CG32295	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	19178939	X_19178939_SNP [dm3] X_19284906_SNP [dm6]	A	T	5.242e^-4	1	UPSTREAM CG8034 INTRON CG8034
3L	5218189	3L_5218189_DEL [dm3] 3L_5225089_DEL [dm6]	AATTTGAATCAAA...	A	5.243e^-4	1	INTRON shep
2L	2056605	2L_2056605_SNP [dm3] 2L_2056605_SNP [dm6]	C	G	5.259e^-4	1	INTRON Or22c
X	9076338	X_9076338_SNP [dm3] X_9182305_SNP [dm6]	C	A	5.268e^-4	1	UTR_3_PRIME mei-P26
3R	10003948	3R_10003948_SNP [dm3] 3R_14178226_SNP [dm6]	G	A	5.274e^-4	1	SYNONYMOUS_CODING Dop1R1
2L	11590906	2L_11590906_SNP [dm3] 2L_11590906_SNP [dm6]	T	G	5.291e^-4	1	DOWNSTREAM Acp33A INTRON kek2
3R	24374842	3R_24374842_SNP [dm3] 3R_28549120_SNP [dm6]	A	G	5.294e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21780347	3L_21780347_SNP [dm3] 3L_21787247_SNP [dm6]	G	T	5.295e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	14643915	3L_14643915_SNP [dm3] 3L_14650815_SNP [dm6]	A	G	5.295e^-4	1	INTRON dlp	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cnc mE1_TFBS_HSA
X	19522389	X_19522389_SNP [dm3] X_19628356_SNP [dm6]	G	A	5.296e^-4	1	NON_SYNONYMOUS_CODING e_y_3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7574940	3L_7574940_SNP [dm3] 3L_7581840_SNP [dm6]	C	T	5.296e^-4	1	INTERGENIC
3R	11498624	3R_11498624_DEL [dm3] 3R_15672902_DEL [dm6]	AA	A	5.313e^-4	1	INTRON pxb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_sens
2L	9826048	2L_9826048_SNP [dm3] 2L_9826048_SNP [dm6]	G	T	5.327e^-4	1	INTRON nAChRalpha6
2L	14471284	2L_14471284_SNP [dm3] 2L_14471284_SNP [dm6]	A	T	5.333e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	20845324	2L_20845324_INS [dm3] 2L_20845324_INS [dm6]	T	ATTC	5.340e^-4	1	INTRON CG31676
3R	16052696	3R_16052696_SNP [dm3] 3R_20226974_SNP [dm6]	C	T	5.346e^-4	1	INTRON Nlg4	TF binding site mE1_TFBS_cad
2R	14916065	2R_14916065_SNP [dm3] 2R_19028560_SNP [dm6]	T	A	5.347e^-4	1	INTRON 5-HT1B
2L	9032201	2L_9032201_SNP [dm3] 2L_9032201_SNP [dm6]	C	T	5.348e^-4	1	UPSTREAM CG9582 & 1 other INTERGENIC
3R	19988653	3R_19988653_SNP [dm3] 3R_24162931_SNP [dm6]	T	G	5.352e^-4	1	SYNONYMOUS_CODING mRpS24 UTR_3_PRIME CG6182	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	17247089	2L_17247089_SNP [dm3] 2L_17247089_SNP [dm6]	T	A	5.359e^-4	1	UPSTREAM CR44395 & 1 other INTRON beat-IIIc
2L	13894650	2L_13894650_SNP [dm3] 2L_13894650_SNP [dm6]	C	T	5.362e^-4	1	INTRON CenG1A	TF binding site mE1_TFBS_cad
3L	13744747	3L_13744747_SNP [dm3] 3L_13751647_SNP [dm6]	C	G	5.365e^-4	1	INTRON bru-3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	5203430	3L_5203430_DEL [dm3] 3L_5210330_DEL [dm6]	AA	A	5.380e^-4	1	INTRON shep
2L	17247154	2L_17247154_SNP [dm3] 2L_17247154_SNP [dm6]	T	C	5.386e^-4	1	UPSTREAM CR44395 & 1 other INTRON beat-IIIc
3L	15674093	3L_15674093_SNP [dm3] 3L_15680993_SNP [dm6]	T	C	5.395e^-4	1	SYNONYMOUS_CODING CG7304 DOWNSTREAM CG7579
3L	14626567	3L_14626567_SNP [dm3] 3L_14633467_SNP [dm6]	G	A	5.395e^-4	1	INTRON dlp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	14483854	2L_14483854_SNP [dm3] 2L_14483854_SNP [dm6]	C	G	5.398e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3L	7277250	3L_7277250_INS [dm3] 3L_7284150_INS [dm6]	A	AAG	5.400e^-4	1	INTRON unc-13-4A
X	3217218	X_3217218_SNP [dm3] X_3323185_SNP [dm6]	T	A	5.401e^-4	1	INTRON CR44886 & 1 other
2L	14455015	2L_14455015_SNP [dm3] 2L_14455015_SNP [dm6]	T	G	5.402e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3R	12674864	3R_12674864_SNP [dm3] 3R_16849142_SNP [dm6]	T	A	5.403e^-4	1	UPSTREAM iab-8 & 1 other INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	10174689	3R_10174689_INS [dm3] 3R_14348967_INS [dm6]	T	TGACT	5.404e^-4	1	INTRON NK7.1
3L	1872491	3L_1872491_SNP [dm3] 3L_1872491_SNP [dm6]	T	G	5.411e^-4	1	DOWNSTREAM CG13924 INTRON dre4	TF binding site mE1_TFBS_cad
2R	14085614	2R_14085614_SNP [dm3] 2R_18198109_SNP [dm6]	A	T	5.414e^-4	1	INTERGENIC
2L	14178794	2L_14178794_INS [dm3] 2L_14178794_INS [dm6]	A	AA	5.414e^-4	1	INTRON CG43333
3R	6041002	3R_6041002_SNP [dm3] 3R_10215280_SNP [dm6]	C	T	5.417e^-4	1	INTRON Syn	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1440162	2L_1440162_SNP [dm3] 2L_1440162_SNP [dm6]	T	G	5.421e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	19214394	3L_19214394_SNP [dm3] 3L_19221294_SNP [dm6]	A	G	5.427e^-4	1	INTRON fz2
X	13234686	X_13234686_SNP [dm3] X_13340653_SNP [dm6]	A	G	5.434e^-4	1	UTR_3_PRIME CG15747
3L	2323145	3L_2323145_SNP [dm3] 3L_2323145_SNP [dm6]	A	C	5.436e^-4	1	INTRON MsR1
3R	13537300	3R_13537300_SNP [dm3] 3R_17711578_SNP [dm6]	G	C	5.437e^-4	1	INTRON osa	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	7728390	2L_7728390_SNP [dm3] 2L_7728390_SNP [dm6]	A	G	5.440e^-4	1	SYNONYMOUS_CODING CG13796
2R	16857697	2R_16857697_SNP [dm3] 2R_20970192_SNP [dm6]	A	G	5.440e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	10012825	3R_10012825_SNP [dm3] 3R_14187103_SNP [dm6]	C	T	5.442e^-4	1	INTRON Dop1R1
2R	5742476	2R_5742476_SNP [dm3] 2R_9854971_SNP [dm6]	T	C	5.448e^-4	1	SYNONYMOUS_CODING CG1516	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13907715	3R_13907715_SNP [dm3] 3R_18081993_SNP [dm6]	A	G	5.452e^-4	1	SYNONYMOUS_CODING CG14317	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6956154	3L_6956154_SNP [dm3] 3L_6963054_SNP [dm6]	C	A	5.454e^-4	1	INTRON sgl	TF binding site BDTNP1_TFBS_dl
2L	1441337	2L_1441337_SNP [dm3] 2L_1441337_SNP [dm6]	T	G	5.461e^-4	1	INTERGENIC
3R	12688856	3R_12688856_SNP [dm3] 3R_16863134_SNP [dm6]	G	A	5.467e^-4	1	INTRON iab-8
3L	10387229	3L_10387229_SNP [dm3] 3L_10394129_SNP [dm6]	T	C	5.476e^-4	1	INTERGENIC
3L	8147719	3L_8147719_SNP [dm3] 3L_8154619_SNP [dm6]	C	T	5.476e^-4	1	DOWNSTREAM CG42445 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	17267776	3L_17267776_SNP [dm3] 3L_17274676_SNP [dm6]	G	C	5.478e^-4	1	DOWNSTREAM CR45436 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	18909224	3L_18909224_DEL [dm3] 3L_18916124_DEL [dm6]	TA	T	5.492e^-4	1	INTERGENIC
2R	17875152	2R_17875152_SNP [dm3] 2R_21987647_SNP [dm6]	C	T	5.504e^-4	1	UTR_3_PRIME CG34370 UPSTREAM CG30401
3R	27016671	3R_27016671_SNP [dm3] 3R_31190949_SNP [dm6]	G	A	5.523e^-4	1	INTRON mesh
3L	17585428	3L_17585428_SNP [dm3] 3L_17592328_SNP [dm6]	A	G	5.524e^-4	1	INTRON Eip74EF
2R	13219277	2R_13219277_DEL [dm3] 2R_17331772_DEL [dm6]	TCCTTTA	T	5.528e^-4	1	INTRON mbl	TF binding site BDTNP1_TFBS_prd
2R	14207795	2R_14207795_SNP [dm3] 2R_18320290_SNP [dm6]	C	T	5.531e^-4	1	INTRON sbb
3L	12523523	3L_12523523_SNP [dm3] 3L_12530423_SNP [dm6]	A	T	5.531e^-4	1	UPSTREAM nst DOWNSTREAM Tsf2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	16926148	2L_16926148_SNP [dm3] 2L_16926148_SNP [dm6]	T	C	5.532e^-4	1	INTERGENIC
3L	2748433	3L_2748433_SNP [dm3] 3L_2748433_SNP [dm6]	T	C	5.540e^-4	1	INTRON Mrtf
2L	827596	2L_827596_SNP [dm3] 2L_827596_SNP [dm6]	G	A	5.548e^-4	1	INTRON dock	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	10075826	X_10075826_SNP [dm3] X_10181793_SNP [dm6]	T	A	5.575e^-4	1	INTRON CG43902 & 1 other
3L	2737431	3L_2737431_SNP [dm3] 3L_2737431_SNP [dm6]	C	G	5.580e^-4	1	INTRON Mrtf
X	6006729	X_6006729_SNP [dm3] X_6112696_SNP [dm6]	T	C	5.585e^-4	1	SYNONYMOUS_CODING Ca-alpha1T	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7614710	3L_7614710_INS [dm3] 3L_7621610_INS [dm6]	G	GG	5.586e^-4	1	INTRON CG33275	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z
3R	24217156	3R_24217156_SNP [dm3] 3R_28391434_SNP [dm6]	C	T	5.590e^-4	1	INTERGENIC
2L	9842840	2L_9842840_SNP [dm3] 2L_9842840_SNP [dm6]	C	G	5.595e^-4	1	INTRON nAChRalpha6
3L	2750804	3L_2750804_DEL [dm3] 3L_2750804_DEL [dm6]	TCAAAATTCCC...	T	5.613e^-4	1	INTRON Mrtf
3R	24245896	3R_24245896_SNP [dm3] 3R_28420174_SNP [dm6]	T	C	5.614e^-4	1	INTRON beat-VI
3L	2374206	3L_2374206_SNP [dm3] 3L_2374206_SNP [dm6]	T	C	5.619e^-4	1	SYNONYMOUS_CODING CG9004 UPSTREAM mRpL23	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
X	19608050	X_19608050_DEL [dm3] X_19714017_DEL [dm6]	TT	T	5.624e^-4	1	UPSTREAM meso18E DOWNSTREAM CR44889 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	14142385	3R_14142385_SNP [dm3] 3R_18316663_SNP [dm6]	T	C	5.636e^-4	1	UTR_3_PRIME CG31235 DOWNSTREAM CG31235
2L	1432378	2L_1432378_SNP [dm3] 2L_1432378_SNP [dm6]	G	A	5.638e^-4	1	UPSTREAM snRNA:U3:22A INTERGENIC
3R	4048056	3R_4048056_SNP [dm3] 3R_8222334_SNP [dm6]	G	T	5.646e^-4	1	DOWNSTREAM CG18249 INTERGENIC
2R	14510696	2R_14510696_SNP [dm3] 2R_18623191_SNP [dm6]	T	C	5.651e^-4	1	DOWNSTREAM CG5335 INTRON Atg7
2L	14611575	2L_14611575_SNP [dm3] 2L_14611575_SNP [dm6]	A	G	5.658e^-4	1	INTRON osp	regulatory region REDfly_CRMs
X	12734895	X_12734895_SNP [dm3] X_12840862_SNP [dm6]	G	C	5.661e^-4	1	INTRON Pde9
3L	15676062	3L_15676062_SNP [dm3] 3L_15682962_SNP [dm6]	G	A	5.662e^-4	1	SYNONYMOUS_CODING CG7579 UPSTREAM pgant8	TF binding site mE1_TFBS_sens
3R	18159725	3R_18159725_SNP [dm3] 3R_22334003_SNP [dm6]	G	A	5.663e^-4	1	UTR_5_PRIME CG5391 DOWNSTREAM CG5388
3R	10051685	3R_10051685_SNP [dm3] 3R_14225963_SNP [dm6]	T	G	5.667e^-4	1	SYNONYMOUS_CODING CG9631	TF binding site mE1_TFBS_cad
2L	9141882	2L_9141882_SNP [dm3] 2L_9141882_SNP [dm6]	A	T	5.668e^-4	1	INTRON CG32982
2L	12088478	2L_12088478_SNP [dm3] 2L_12088478_SNP [dm6]	T	A	5.669e^-4	1	DOWNSTREAM CR44593 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3R	3797604	3R_3797604_SNP [dm3] 3R_7971882_SNP [dm6]	C	A	5.671e^-4	1	INTERGENIC
X	15353607	X_15353607_SNP [dm3] X_15459574_SNP [dm6]	A	G	5.671e^-4	1	INTRON shtd	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18147678	3R_18147678_SNP [dm3] 3R_22321956_SNP [dm6]	G	A	5.672e^-4	1	INTRON CG34377
2L	14465361	2L_14465361_SNP [dm3] 2L_14465361_SNP [dm6]	A	T	5.672e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	12225412	2L_12225412_SNP [dm3] 2L_12225412_SNP [dm6]	T	C	5.673e^-4	1	INTRON aret
3L	7464106	3L_7464106_SNP [dm3] 3L_7471006_SNP [dm6]	A	T	5.685e^-4	1	UPSTREAM CG8543 & 1 other INTERGENIC
2L	5425613	2L_5425613_SNP [dm3] 2L_5425613_SNP [dm6]	C	T	5.691e^-4	1	INTERGENIC
2R	16664864	2R_16664864_SNP [dm3] 2R_20777359_SNP [dm6]	G	A	5.694e^-4	1	NON_SYNONYMOUS_CODING CG43710 UPSTREAM CG43709 DOWNSTREAM CG43711
3L	10280267	3L_10280267_SNP [dm3] 3L_10287167_SNP [dm6]	C	T	5.697e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14982334	2L_14982334_SNP [dm3] 2L_14982334_SNP [dm6]	A	T	5.698e^-4	1	INTRON mol
2L	1629646	2L_1629646_SNP [dm3] 2L_1629646_SNP [dm6]	C	T	5.704e^-4	1	INTERGENIC
2R	5711987	2R_5711987_SNP [dm3] 2R_9824482_SNP [dm6]	A	T	5.706e^-4	1	INTRON dila	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	6639789	X_6639789_SNP [dm3] X_6745756_SNP [dm6]	C	A	5.716e^-4	1	DOWNSTREAM CR44964 INTRON CR44895
3L	2528240	3L_2528240_SNP [dm3] 3L_2528240_SNP [dm6]	T	C	5.725e^-4	1	INTRON Spn
2L	12689220	2L_12689220_SNP [dm3] 2L_12689220_SNP [dm6]	A	C	5.726e^-4	1	INTERGENIC
2L	14391209	2L_14391209_SNP [dm3] 2L_14391209_SNP [dm6]	G	A	5.728e^-4	1	SYNONYMOUS_CODING elB	TF binding site mE1_TFBS_chinmo
3L	19190762	3L_19190762_SNP [dm3] 3L_19197662_SNP [dm6]	C	G	5.730e^-4	1	INTRON fz2	TF binding site mE1_TFBS_inv
2R	6750754	2R_6750754_SNP [dm3] 2R_10863249_SNP [dm6]	G	A	5.737e^-4	1	INTRON CG30015
3R	11124169	3R_11124169_SNP [dm3] 3R_15298447_SNP [dm6]	G	A	5.750e^-4	1	DOWNSTREAM Tm1 INTRON Tm1
2L	4348861	2L_4348861_DEL [dm3] 2L_4348861_DEL [dm6]	TTGGG	T	5.755e^-4	1	UPSTREAM CR44699 DOWNSTREAM CR44697 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	12094842	2R_12094842_DEL [dm3] 2R_16207337_DEL [dm6]	AA	A	5.768e^-4	1	DOWNSTREAM tRNA:CR30237 INTRON mrj	TF binding site BDTNP1_TFBS_dl
3R	19690299	3R_19690299_SNP [dm3] 3R_23864577_SNP [dm6]	G	C	5.769e^-4	1	INTRON Pli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	14037261	3R_14037261_SNP [dm3] 3R_18211539_SNP [dm6]	C	A	5.787e^-4	1	INTRON CG7985
2R	2606874	2R_2606874_SNP [dm3] 2R_6719369_SNP [dm6]	A	G	5.789e^-4	1	SYNONYMOUS_CODING Zip42C.2	TF binding site mE1_TFBS_cad
3R	18151449	3R_18151449_SNP [dm3] 3R_22325727_SNP [dm6]	G	T	5.789e^-4	1	INTERGENIC
X	9184273	X_9184273_SNP [dm3] X_9290240_SNP [dm6]	C	A	5.789e^-4	1	INTRON lz	TF binding site mE1_TFBS_Kr
3R	19924397	3R_19924397_SNP [dm3] 3R_24098675_SNP [dm6]	A	T	5.790e^-4	1	INTRON 4EHP
2R	14490740	2R_14490740_SNP [dm3] 2R_18603235_SNP [dm6]	T	G	5.792e^-4	1	INTRON GEFmeso	TF binding site mE1_TFBS_HSA
3L	19180203	3L_19180203_SNP [dm3] 3L_19187103_SNP [dm6]	C	T	5.798e^-4	1	INTRON fz2
X	3217162	X_3217162_SNP [dm3] X_3323129_SNP [dm6]	A	T	5.804e^-4	1	INTRON CR44886 & 1 other
3R	20902679	3R_20902679_INS [dm3] 3R_25076957_INS [dm6]	A	AA	5.813e^-4	1	DOWNSTREAM CG11920 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12116132	2L_12116132_SNP [dm3] 2L_12116132_SNP [dm6]	C	T	5.814e^-4	1	INTRON CG17211
2L	6867885	2L_6867885_SNP [dm3] 2L_6867885_SNP [dm6]	C	T	5.816e^-4	1	INTRON Nha1
3R	12326564	3R_12326564_SNP [dm3] 3R_16500842_SNP [dm6]	T	C	5.819e^-4	1	SYNONYMOUS_CODING decay	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3R	6201960	3R_6201960_DEL [dm3] 3R_10376238_DEL [dm6]	ACATTTTTGTAGAAATGATT...	A	5.831e^-4	1	INTRON Rfx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	11159437	2R_11159437_SNP [dm3] 2R_15271932_SNP [dm6]	G	A	5.834e^-4	1	INTRON Trpm
2R	15051516	2R_15051516_DEL [dm3] 2R_19164011_DEL [dm6]	AA	A	5.834e^-4	1	UPSTREAM CG10737 DOWNSTREAM ena INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	8174716	2L_8174716_SNP [dm3] 2L_8174716_SNP [dm6]	G	A	5.843e^-4	1	INTRON Piezo	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	15773176	3R_15773176_SNP [dm3] 3R_19947454_SNP [dm6]	C	A	5.854e^-4	1	UPSTREAM CG4783 INTRON Hs6st
2L	10220159	2L_10220159_SNP [dm3] 2L_10220159_SNP [dm6]	A	G	5.855e^-4	1	UTR_5_PRIME Npc1a INTRON Npc1a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	11428386	2L_11428386_SNP [dm3] 2L_11428386_SNP [dm6]	T	C	5.865e^-4	1	INTERGENIC
3R	12013545	3R_12013545_SNP [dm3] 3R_16187823_SNP [dm6]	A	G	5.866e^-4	1	UPSTREAM Bin1 INTRON sra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	6276323	2L_6276323_SNP [dm3] 2L_6276323_SNP [dm6]	C	T	5.870e^-4	1	INTRON Ddr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14455290	2L_14455290_SNP [dm3] 2L_14455290_SNP [dm6]	G	T	5.871e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3R	6015387	3R_6015387_SNP [dm3] 3R_10189665_SNP [dm6]	G	A	5.883e^-4	1	UPSTREAM CG12814 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	4253737	X_4253737_SNP [dm3] X_4359704_SNP [dm6]	G	T	5.889e^-4	1	SYNONYMOUS_CODING norpA
3R	3569685	3R_3569685_SNP [dm3] 3R_7743963_SNP [dm6]	T	A	5.901e^-4	1	INTERGENIC
2R	14035534	2R_14035534_SNP [dm3] 2R_18148029_SNP [dm6]	G	A	5.905e^-4	1	UPSTREAM CG17680 DOWNSTREAM CG5742 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx

By genomic position
Variant impact
Gene name

se_AlcoholSens_E2 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results