DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.450e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2278 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	9739780	2R_9739780_SNP [dm3] 2R_13852275_SNP [dm6]	A	G	8.819e^-7	0.654	SYNONYMOUS_CODING CG30485 DOWNSTREAM CG6543
3L	2551434	3L_2551434_SNP [dm3] 3L_2551434_SNP [dm6]	C	T	1.825e^-6	0.654	INTRON Spn
X	18372916	X_18372916_INS [dm3] X_18478883_INS [dm6]	A	AATACGGA	1.987e^-6	0.654	INTRON CG32547
2L	13555054	2L_13555054_SNP [dm3] 2L_13555054_SNP [dm6]	C	T	2.151e^-6	0.654	INTRON kuz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13555105	2L_13555105_SNP [dm3] 2L_13555105_SNP [dm6]	G	T	2.269e^-6	0.654	INTRON kuz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12308858	2L_12308858_SNP [dm3] 2L_12308858_SNP [dm6]	C	A	2.531e^-6	0.654	INTRON aret
3L	4161004	3L_4161004_SNP [dm3] 3L_4161004_SNP [dm6]	A	G	2.776e^-6	0.654	UPSTREAM nab DOWNSTREAM mas INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3L	2937743	3L_2937743_DEL [dm3] 3L_2937743_DEL [dm6]	TT	T	2.791e^-6	0.654	INTRON Shab
X	18372917	X_18372917_SNP [dm3] X_18478884_SNP [dm6]	G	A	4.033e^-6	0.719	INTRON CG32547
2L	1242374	2L_1242374_SNP [dm3] 2L_1242374_SNP [dm6]	C	A	4.451e^-6	0.719	UTR_3_PRIME CG5397 DOWNSTREAM CG5397	TF binding site mE1_TFBS_chinmo
3R	13045121	3R_13045121_SNP [dm3] 3R_17219399_SNP [dm6]	A	C	4.745e^-6	0.719	NON_SYNONYMOUS_CODING CG31262
2L	9971425	2L_9971425_SNP [dm3] 2L_9971425_SNP [dm6]	A	G	4.798e^-6	0.719	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12308835	2L_12308835_SNP [dm3] 2L_12308835_SNP [dm6]	C	T	4.980e^-6	0.719	INTRON aret
X	7651622	X_7651622_SNP [dm3] X_7757589_SNP [dm6]	G	A	5.482e^-6	0.735	INTERGENIC
2R	9736894	2R_9736894_SNP [dm3] 2R_13849389_SNP [dm6]	A	G	5.977e^-6	0.735	NON_SYNONYMOUS_CODING CG30484 UPSTREAM CG30485
X	5512856	X_5512856_SNP [dm3] X_5618823_SNP [dm6]	A	T	6.271e^-6	0.735	UPSTREAM RhoGAP5A DOWNSTREAM Mlc-c INTERGENIC
2R	16787070	2R_16787070_SNP [dm3] 2R_20899565_SNP [dm6]	A	G	7.379e^-6	0.743	DOWNSTREAM CR43160 INTRON otp	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3R	10939401	3R_10939401_INS [dm3] 3R_15113679_INS [dm6]	T	AC	7.408e^-6	0.743	INTRON CG42788
3L	2538015	3L_2538015_SNP [dm3] 3L_2538015_SNP [dm6]	G	C	7.973e^-6	0.743	INTRON Spn
3L	3927640	3L_3927640_SNP [dm3] 3L_3927640_SNP [dm6]	G	T	8.364e^-6	0.743	INTRON Eip63F-1
2L	11366751	2L_11366751_SNP [dm3] 2L_11366751_SNP [dm6]	G	C	8.572e^-6	0.743	SYNONYMOUS_CODING salr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14540344	2R_14540344_SNP [dm3] 2R_18652839_SNP [dm6]	A	G	1.061e^-5	0.743	UPSTREAM SP2637 INTRON SP2637	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	22122057	X_22122057_SNP [dm3] X_22720221_SNP [dm6]	C	T	1.070e^-5	0.743	INTRON CR44997	transposable element FlyBase
2R	9745655	2R_9745655_SNP [dm3] 2R_13858150_SNP [dm6]	T	C	1.097e^-5	0.743	SYNONYMOUS_CODING tum UPSTREAM Uba3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12546780	2L_12546780_SNP [dm3] 2L_12546780_SNP [dm6]	G	A	1.210e^-5	0.743	UPSTREAM bun INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	16754115	2R_16754115_SNP [dm3] 2R_20866610_SNP [dm6]	C	A	1.253e^-5	0.743	NON_SYNONYMOUS_CODING CG15227
X	18372918	X_18372918_SNP [dm3] X_18478885_SNP [dm6]	C	T	1.289e^-5	0.743	INTRON CG32547
X	5989440	X_5989440_SNP [dm3] X_6095407_SNP [dm6]	A	T	1.367e^-5	0.743	INTRON Nep1
X	5230114	X_5230114_SNP [dm3] X_5336081_SNP [dm6]	G	A	1.401e^-5	0.743	INTERGENIC
2L	12546775	2L_12546775_SNP [dm3] 2L_12546775_SNP [dm6]	C	T	1.422e^-5	0.743	UPSTREAM bun INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	16373113	X_16373113_SNP [dm3] X_16479080_SNP [dm6]	C	T	1.461e^-5	0.743	INTRON para
3L	18626499	3L_18626499_SNP [dm3] 3L_18633399_SNP [dm6]	T	A	1.515e^-5	0.743	INTRON MYPT-75D
3L	2078460	3L_2078460_SNP [dm3] 3L_2078460_SNP [dm6]	G	T	1.568e^-5	0.743	INTRON sls
X	12424758	X_12424758_DEL [dm3] X_12530725_DEL [dm6]	TGG	T	1.679e^-5	0.743	INTRON CG43921
3R	14490477	3R_14490477_SNP [dm3] 3R_18664755_SNP [dm6]	A	C	1.727e^-5	0.743	SYNONYMOUS_CODING Gos28 UPSTREAM CG31231	TF binding site mE1_TFBS_cad
2R	11254390	2R_11254390_SNP [dm3] 2R_15366885_SNP [dm6]	C	T	1.816e^-5	0.743	SYNONYMOUS_CODING unc-5	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	1600531	3L_1600531_SNP [dm3] 3L_1600531_SNP [dm6]	T	C	1.908e^-5	0.743	UTR_3_PRIME CG13917 DOWNSTREAM CG12104 & 1 other
3R	14490030	3R_14490030_SNP [dm3] 3R_18664308_SNP [dm6]	T	A	1.935e^-5	0.743	UPSTREAM Cpsf73 INTRON Gos28	TF binding site BDTNP1_TFBS_dl
3R	14486461	3R_14486461_SNP [dm3] 3R_18660739_SNP [dm6]	C	T	1.959e^-5	0.743	SYNONYMOUS_CODING CstF-64 DOWNSTREAM Cpsf73	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	2364257	3R_2364257_SNP [dm3] 3R_6538535_SNP [dm6]	C	A	2.008e^-5	0.743	INTRON dpr11
2L	4053332	2L_4053332_SNP [dm3] 2L_4053332_SNP [dm6]	T	C	2.116e^-5	0.743	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2537982	3L_2537982_SNP [dm3] 3L_2537982_SNP [dm6]	A	T	2.143e^-5	0.743	INTRON Spn
X	5989374	X_5989374_SNP [dm3] X_6095341_SNP [dm6]	G	C	2.205e^-5	0.743	INTRON Nep1
2L	13118661	2L_13118661_SNP [dm3] 2L_13118661_SNP [dm6]	T	G	2.242e^-5	0.743	UPSTREAM CG43050 DOWNSTREAM CR44198 INTERGENIC
2R	11413959	2R_11413959_SNP [dm3] 2R_15526454_SNP [dm6]	T	C	2.281e^-5	0.743	SYNONYMOUS_CODING Khc-73	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	5989474	X_5989474_SNP [dm3] X_6095441_SNP [dm6]	T	C	2.391e^-5	0.743	INTRON Nep1
3R	16977130	3R_16977130_SNP [dm3] 3R_21151408_SNP [dm6]	G	A	2.401e^-5	0.743	INTRON SNF4Agamma
2R	17002331	2R_17002331_SNP [dm3] 2R_21114826_SNP [dm6]	G	A	2.463e^-5	0.743	INTRON ktub
3R	10923105	3R_10923105_SNP [dm3] 3R_15097383_SNP [dm6]	G	T	2.584e^-5	0.743	UTR_3_PRIME CG42788
2L	9514961	2L_9514961_SNP [dm3] 2L_9514961_SNP [dm6]	G	A	2.627e^-5	0.743	INTRON CG33298
X	13006683	X_13006683_SNP [dm3] X_13112650_SNP [dm6]	A	T	2.724e^-5	0.743	UPSTREAM CG43313 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	13045213	3R_13045213_SNP [dm3] 3R_17219491_SNP [dm6]	A	T	2.763e^-5	0.743	INTRON CG31262
3R	14487806	3R_14487806_SNP [dm3] 3R_18662084_SNP [dm6]	C	A	2.799e^-5	0.743	SYNONYMOUS_CODING Cpsf73 DOWNSTREAM CstF-64	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13118675	2L_13118675_SNP [dm3] 2L_13118675_SNP [dm6]	A	G	2.818e^-5	0.743	UPSTREAM CG43050 DOWNSTREAM CR44198 INTERGENIC
3L	3430790	3L_3430790_SNP [dm3] 3L_3430790_SNP [dm6]	C	G	2.861e^-5	0.743	INTRON eIF5B
X	22129957	X_22129957_SNP [dm3] X_22728121_SNP [dm6]	A	T	2.866e^-5	0.743	INTRON CR44997
2L	7204423	2L_7204423_SNP [dm3] 2L_7204423_SNP [dm6]	T	A	2.895e^-5	0.743	UPSTREAM CG4502 DOWNSTREAM CG13784 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA
X	22129779	X_22129779_MNP [dm3] X_22727943_MNP [dm6]	ACT	TGA	2.900e^-5	0.743	INTRON CR44997
2L	14975101	2L_14975101_SNP [dm3] 2L_14975101_SNP [dm6]	T	A	2.941e^-5	0.743	DOWNSTREAM mol & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14489801	3R_14489801_SNP [dm3] 3R_18664079_SNP [dm6]	G	A	2.943e^-5	0.743	UPSTREAM Cpsf73 INTRON Gos28	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	20605822	3R_20605822_SNP [dm3] 3R_24780100_SNP [dm6]	T	G	2.965e^-5	0.743	SYNONYMOUS_CODING CG42331	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	1040585	3L_1040585_SNP [dm3] 3L_1040585_SNP [dm6]	T	C	2.972e^-5	0.743	INTRON bab1	TF binding site mE1_TFBS_cad
X	18372873	X_18372873_SNP [dm3] X_18478840_SNP [dm6]	A	G	2.982e^-5	0.743	INTRON CG32547
X	22131002	X_22131002_SNP [dm3] X_22729166_SNP [dm6]	A	T	3.008e^-5	0.743	INTRON CR44997
2R	19301889	2R_19301889_SNP [dm3] 2R_23414366_SNP [dm6]	C	T	3.013e^-5	0.743	INTRON CG9812
3L	2180921	3L_2180921_SNP [dm3] 3L_2180921_SNP [dm6]	C	T	3.026e^-5	0.743	INTERGENIC
3R	21319760	3R_21319760_SNP [dm3] 3R_25494038_SNP [dm6]	G	T	3.047e^-5	0.743	NON_SYNONYMOUS_CODING CG33494 UPSTREAM CR44179 DOWNSTREAM CG5112
3R	14489814	3R_14489814_SNP [dm3] 3R_18664092_SNP [dm6]	G	C	3.096e^-5	0.743	UPSTREAM Cpsf73 INTRON Gos28	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	2927300	3L_2927300_SNP [dm3] 3L_2927300_SNP [dm6]	T	C	3.107e^-5	0.743	INTRON Shab
2R	7682981	2R_7682981_SNP [dm3] 2R_11795476_SNP [dm6]	T	A	3.114e^-5	0.743	INTRON ths	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	10420442	2R_10420442_SNP [dm3] 2R_14532937_SNP [dm6]	G	A	3.136e^-5	0.743	INTRON ttv
X	22131112	X_22131112_SNP [dm3] X_22729276_SNP [dm6]	A	T	3.140e^-5	0.743	INTRON CR44997	transposable element FlyBase
3R	18102984	3R_18102984_SNP [dm3] 3R_22277262_SNP [dm6]	T	A	3.155e^-5	0.743	INTRON SKIP
2R	14362307	2R_14362307_SNP [dm3] 2R_18474802_SNP [dm6]	C	T	3.303e^-5	0.743	INTRON CG30116
X	22132485	X_22132485_SNP [dm3] X_22730649_SNP [dm6]	T	C	3.307e^-5	0.743	INTRON CR44997	transposable element FlyBase
2R	9271220	2R_9271220_SNP [dm3] 2R_13383715_SNP [dm6]	G	C	3.372e^-5	0.743	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1944341	2L_1944341_SNP [dm3] 2L_1944341_SNP [dm6]	G	C	3.406e^-5	0.743	DOWNSTREAM CG7337 & 1 other INTERGENIC
2L	13555119	2L_13555119_SNP [dm3] 2L_13555119_SNP [dm6]	C	G	3.498e^-5	0.743	INTRON kuz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6804628	2L_6804628_SNP [dm3] 2L_6804628_SNP [dm6]	T	A	3.575e^-5	0.743	UTR_3_PRIME CG17375 DOWNSTREAM CG11236	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	3406491	3L_3406491_SNP [dm3] 3L_3406491_SNP [dm6]	G	T	3.618e^-5	0.743	INTRON sty
X	5989321	X_5989321_SNP [dm3] X_6095288_SNP [dm6]	A	G	3.704e^-5	0.743	INTRON Nep1
3L	13284028	3L_13284028_INS [dm3] 3L_13290928_INS [dm6]	T	TT	3.706e^-5	0.743	DOWNSTREAM CR43912 EXON CR43912
3R	14490540	3R_14490540_SNP [dm3] 3R_18664818_SNP [dm6]	A	G	3.732e^-5	0.743	SYNONYMOUS_CODING Gos28 UPSTREAM CG31231	TF binding site mE1_TFBS_cad
X	22129766	X_22129766_SNP [dm3] X_22727930_SNP [dm6]	G	A	3.742e^-5	0.743	INTRON CR44997
3L	2459015	3L_2459015_SNP [dm3] 3L_2459015_SNP [dm6]	A	T	3.789e^-5	0.743	INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3L	2180898	3L_2180898_SNP [dm3] 3L_2180898_SNP [dm6]	A	C	3.953e^-5	0.743	INTERGENIC
X	18372869	X_18372869_SNP [dm3] X_18478836_SNP [dm6]	C	T	4.008e^-5	0.743	INTRON CG32547
3L	7391027	3L_7391027_SNP [dm3] 3L_7397927_SNP [dm6]	A	G	4.067e^-5	0.743	SYNONYMOUS_CODING CG32379 UPSTREAM CG8562	TF binding site mE1_TFBS_cad
3L	2606558	3L_2606558_SNP [dm3] 3L_2606558_SNP [dm6]	C	T	4.068e^-5	0.743	INTRON Pxn
3R	14490075	3R_14490075_SNP [dm3] 3R_18664353_SNP [dm6]	T	A	4.070e^-5	0.743	UPSTREAM Cpsf73 INTRON Gos28
2R	16787160	2R_16787160_SNP [dm3] 2R_20899655_SNP [dm6]	C	T	4.103e^-5	0.743	INTRON otp	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3L	7390825	3L_7390825_SNP [dm3] 3L_7397725_SNP [dm6]	T	A	4.152e^-5	0.743	UPSTREAM CG8562 INTRON CG32379
2R	18982597	2R_18982597_SNP [dm3] 2R_23095074_SNP [dm6]	G	C	4.264e^-5	0.743	UPSTREAM CG9876 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	20617888	3L_20617888_SNP [dm3] 3L_20624788_SNP [dm6]	C	A	4.309e^-5	0.743	UPSTREAM CR44684 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	3406512	3L_3406512_SNP [dm3] 3L_3406512_SNP [dm6]	T	C	4.314e^-5	0.743	INTRON sty
X	13006718	X_13006718_SNP [dm3] X_13112685_SNP [dm6]	C	A	4.426e^-5	0.743	UPSTREAM CG43313 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	14490595	3R_14490595_SNP [dm3] 3R_18664873_SNP [dm6]	T	C	4.434e^-5	0.743	SYNONYMOUS_CODING Gos28 UPSTREAM CG31231	TF binding site mE1_TFBS_cad
2R	18964853	2R_18964853_SNP [dm3] 2R_23077330_SNP [dm6]	G	A	4.491e^-5	0.743	SYNONYMOUS_CODING Art7 DOWNSTREAM CG3085	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5230116	X_5230116_SNP [dm3] X_5336083_SNP [dm6]	T	C	4.529e^-5	0.743	INTERGENIC
2L	2309803	2L_2309803_SNP [dm3] 2L_2309803_SNP [dm6]	T	C	4.551e^-5	0.743	DOWNSTREAM CG16995 INTRON CG9967	TF binding site mE1_TFBS_chinmo
2R	10549216	2R_10549216_SNP [dm3] 2R_14661711_SNP [dm6]	C	A	4.567e^-5	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13556885	2L_13556885_INS [dm3] 2L_13556885_INS [dm6]	C	CTGCATATC	4.623e^-5	0.743	INTRON kuz
2L	15246607	2L_15246607_SNP [dm3] 2L_15246607_SNP [dm6]	A	T	4.707e^-5	0.743	UPSTREAM ZnT35C INTRON ZnT35C
3L	11009651	3L_11009651_SNP [dm3] 3L_11016551_SNP [dm6]	C	T	4.716e^-5	0.743	INTERGENIC
3R	10573381	3R_10573381_SNP [dm3] 3R_14747659_SNP [dm6]	T	A	4.724e^-5	0.743	UPSTREAM smp-30 INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2R	17977319	2R_17977319_SNP [dm3] 2R_22089814_SNP [dm6]	C	T	4.747e^-5	0.743	UTR_3_PRIME CG43393 DOWNSTREAM CG44163
3R	14488942	3R_14488942_SNP [dm3] 3R_18663220_SNP [dm6]	G	A	4.857e^-5	0.743	SYNONYMOUS_CODING Cpsf73 UPSTREAM Gos28	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2L	14975061	2L_14975061_SNP [dm3] 2L_14975061_SNP [dm6]	T	C	5.035e^-5	0.743	DOWNSTREAM mol & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3119101	2L_3119101_SNP [dm3] 2L_3119101_SNP [dm6]	C	A	5.040e^-5	0.743	INTRON toc
2R	19295991	2R_19295991_SNP [dm3] 2R_23408468_SNP [dm6]	C	G	5.045e^-5	0.743	INTERGENIC
2R	11408054	2R_11408054_DEL [dm3] 2R_15520549_DEL [dm6]	GACT	A	5.096e^-5	0.743	INTRON Khc-73
3L	2180505	3L_2180505_SNP [dm3] 3L_2180505_SNP [dm6]	G	A	5.133e^-5	0.743	INTERGENIC
X	12424599	X_12424599_SNP [dm3] X_12530566_SNP [dm6]	A	C	5.195e^-5	0.743	INTRON CG43921
3L	2339131	3L_2339131_SNP [dm3] 3L_2339131_SNP [dm6]	G	A	5.212e^-5	0.743	INTRON MsR1
2L	6804599	2L_6804599_SNP [dm3] 2L_6804599_SNP [dm6]	A	G	5.226e^-5	0.743	UTR_3_PRIME CG17375 DOWNSTREAM CG17375 & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	22132739	X_22132739_SNP [dm3] X_22730903_SNP [dm6]	A	G	5.245e^-5	0.743	INTRON CR44997	transposable element FlyBase
3R	14490058	3R_14490058_SNP [dm3] 3R_18664336_SNP [dm6]	C	T	5.306e^-5	0.743	UPSTREAM Cpsf73 INTRON Gos28
3L	11653929	3L_11653929_SNP [dm3] 3L_11660829_SNP [dm6]	A	G	5.312e^-5	0.743	INTRON CG32085
2L	13118650	2L_13118650_SNP [dm3] 2L_13118650_SNP [dm6]	A	G	5.362e^-5	0.743	UPSTREAM CG43050 DOWNSTREAM CR44198 INTERGENIC
3L	2606557	3L_2606557_SNP [dm3] 3L_2606557_SNP [dm6]	T	A	5.377e^-5	0.743	INTRON Pxn
2R	18368746	2R_18368746_SNP [dm3] 2R_22481241_SNP [dm6]	C	T	5.379e^-5	0.743	SYNONYMOUS_CODING CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	22064224	X_22064224_SNP [dm3] X_22662388_SNP [dm6]	G	T	5.452e^-5	0.743	INTRON CR44997
X	22129962	X_22129962_SNP [dm3] X_22728126_SNP [dm6]	G	C	5.526e^-5	0.743	INTRON CR44997
4	86435	4_86435_SNP [dm3] 4_65809_SNP [dm6]	T	G	5.549e^-5	0.743	UPSTREAM snoRNA:CD-24 DOWNSTREAM RpS3A INTRON RpS3A
2R	11407887	2R_11407887_SNP [dm3] 2R_15520382_SNP [dm6]	A	G	5.617e^-5	0.743	INTRON Khc-73
3L	2551391	3L_2551391_SNP [dm3] 3L_2551391_SNP [dm6]	T	C	5.637e^-5	0.743	INTRON Spn
3R	14490293	3R_14490293_SNP [dm3] 3R_18664571_SNP [dm6]	G	T	5.640e^-5	0.743	UPSTREAM CG31231 INTRON Gos28	TF binding site mE1_TFBS_cad
3R	11276045	3R_11276045_SNP [dm3] 3R_15450323_SNP [dm6]	G	A	5.690e^-5	0.743	INTRON AdamTS-A
3R	14490184	3R_14490184_INS [dm3] 3R_18664462_INS [dm6]	A	AA	5.712e^-5	0.743	UPSTREAM Cpsf73 & 1 other INTRON Gos28
2L	14998151	2L_14998151_SNP [dm3] 2L_14998151_SNP [dm6]	A	T	5.751e^-5	0.743	UPSTREAM mol INTERGENIC
2L	934761	2L_934761_SNP [dm3] 2L_934761_SNP [dm6]	T	G	5.778e^-5	0.743	INTRON CG4341	TF binding site mE1_TFBS_chinmo
3L	2581474	3L_2581474_SNP [dm3] 3L_2581474_SNP [dm6]	T	C	5.853e^-5	0.743	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	4399904	3L_4399904_SNP [dm3] 3L_4399904_SNP [dm6]	C	T	5.881e^-5	0.743	INTRON slow	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	2292315	2L_2292315_SNP [dm3] 2L_2292315_SNP [dm6]	A	G	5.887e^-5	0.743	INTERGENIC
2L	14997454	2L_14997454_SNP [dm3] 2L_14997454_SNP [dm6]	C	G	5.911e^-5	0.743	UTR_5_PRIME mol INTRON mol	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	2185750	3L_2185750_DEL [dm3] 3L_2185750_DEL [dm6]	AT	A	5.916e^-5	0.743	UPSTREAM CG13810 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	22129344	X_22129344_SNP [dm3] X_22727508_SNP [dm6]	A	T	5.943e^-5	0.743	INTRON CR44997
2R	11967553	2R_11967553_SNP [dm3] 2R_16080048_SNP [dm6]	A	T	6.081e^-5	0.743	INTERGENIC
2L	11774646	2L_11774646_SNP [dm3] 2L_11774646_SNP [dm6]	G	A	6.165e^-5	0.743	INTERGENIC
3L	2551931	3L_2551931_SNP [dm3] 3L_2551931_SNP [dm6]	T	C	6.232e^-5	0.743	INTRON Spn
X	7677347	X_7677347_SNP [dm3] X_7783314_SNP [dm6]	A	T	6.312e^-5	0.743	INTERGENIC
3R	14490260	3R_14490260_SNP [dm3] 3R_18664538_SNP [dm6]	C	G	6.373e^-5	0.743	UPSTREAM Cpsf73 & 1 other INTRON Gos28	TF binding site mE1_TFBS_cad
3R	14490268	3R_14490268_SNP [dm3] 3R_18664546_SNP [dm6]	A	G	6.383e^-5	0.743	UPSTREAM Cpsf73 & 1 other INTRON Gos28	TF binding site mE1_TFBS_cad
2L	13556761	2L_13556761_SNP [dm3] 2L_13556761_SNP [dm6]	C	A	6.405e^-5	0.743	INTRON kuz
X	22130809	X_22130809_SNP [dm3] X_22728973_SNP [dm6]	G	T	6.432e^-5	0.743	INTRON CR44997
2L	1944309	2L_1944309_SNP [dm3] 2L_1944309_SNP [dm6]	G	A	6.433e^-5	0.743	DOWNSTREAM CG7337 & 1 other INTERGENIC
2R	17121067	2R_17121067_SNP [dm3] 2R_21233562_SNP [dm6]	G	A	6.564e^-5	0.743	INTRON ASPP
2L	14910097	2L_14910097_SNP [dm3] 2L_14910097_SNP [dm6]	G	A	6.614e^-5	0.743	INTRON CG42313	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14975050	2L_14975050_SNP [dm3] 2L_14975050_SNP [dm6]	C	T	6.632e^-5	0.743	DOWNSTREAM mol & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20956500	X_20956500_SNP [dm3] X_21085473_SNP [dm6]	C	T	6.634e^-5	0.743	INTERGENIC
2R	18165081	2R_18165081_SNP [dm3] 2R_22277576_SNP [dm6]	C	T	6.808e^-5	0.743	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18626502	3L_18626502_SNP [dm3] 3L_18633402_SNP [dm6]	T	G	6.850e^-5	0.743	INTRON MYPT-75D
X	18365242	X_18365242_SNP [dm3] X_18471209_SNP [dm6]	C	T	6.868e^-5	0.743	INTRON CG32547
X	22133303	X_22133303_SNP [dm3] X_22731467_SNP [dm6]	G	C	6.871e^-5	0.743	INTRON CR44997
2R	12037323	2R_12037323_SNP [dm3] 2R_16149818_SNP [dm6]	T	A	6.912e^-5	0.743	UPSTREAM lbk & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
X	22110686	X_22110686_SNP [dm3] X_22708850_SNP [dm6]	C	G	6.920e^-5	0.743	INTRON CR44997	transposable element FlyBase
2R	7706054	2R_7706054_SNP [dm3] 2R_11818549_SNP [dm6]	A	G	6.940e^-5	0.743	INTERGENIC
3L	2606547	3L_2606547_SNP [dm3] 3L_2606547_SNP [dm6]	T	A	7.067e^-5	0.743	INTRON Pxn
X	13006752	X_13006752_SNP [dm3] X_13112719_SNP [dm6]	G	A	7.091e^-5	0.743	UPSTREAM CG43313 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	21095184	3R_21095184_SNP [dm3] 3R_25269462_SNP [dm6]	A	G	7.100e^-5	0.743	UPSTREAM CG11889 & 1 other DOWNSTREAM CR43310 INTRON CR45214 EXON CR13656	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5457733	2L_5457733_SNP [dm3] 2L_5457733_SNP [dm6]	A	G	7.178e^-5	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
2R	15708693	2R_15708693_INS [dm3] 2R_19821188_INS [dm6]	T	TG	7.230e^-5	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
X	7676622	X_7676622_SNP [dm3] X_7782589_SNP [dm6]	A	C	7.270e^-5	0.743	INTERGENIC
2R	17979117	2R_17979117_INS [dm3] 2R_22091612_INS [dm6]	T	TAT	7.277e^-5	0.743	UTR_3_PRIME CG11073 UPSTREAM CG43393 & 1 other	TF binding site mE1_TFBS_chinmo
X	2479008	X_2479008_SNP [dm3] X_2584975_SNP [dm6]	A	C	7.285e^-5	0.743	INTRON CG13760	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	22131870	X_22131870_SNP [dm3] X_22730034_SNP [dm6]	C	A	7.294e^-5	0.743	INTRON CR44997	transposable element FlyBase
2R	17110807	2R_17110807_SNP [dm3] 2R_21223302_SNP [dm6]	G	T	7.314e^-5	0.743	INTRON ASPP
3L	2480008	3L_2480008_SNP [dm3] 3L_2480008_SNP [dm6]	A	G	7.475e^-5	0.743	INTRON CG45186	TF binding site BDTNP1_TFBS_twi
X	13005944	X_13005944_DEL [dm3] X_13111911_DEL [dm6]	CCTGTTC	C	7.505e^-5	0.743	UTR_5_PRIME CG43313	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	14489079	3R_14489079_SNP [dm3] 3R_18663357_SNP [dm6]	C	T	7.513e^-5	0.743	UPSTREAM Gos28 INTRON Cpsf73	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2L	4053326	2L_4053326_SNP [dm3] 2L_4053326_SNP [dm6]	A	T	7.517e^-5	0.743	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2346986	3R_2346986_SNP [dm3] 3R_6521264_SNP [dm6]	C	A	7.598e^-5	0.743	INTERGENIC
X	22124045	X_22124045_SNP [dm3] X_22722209_SNP [dm6]	C	T	7.654e^-5	0.743	INTRON CR44997
X	21037681	X_21037681_SNP [dm3] X_21166654_SNP [dm6]	T	C	7.657e^-5	0.743	INTERGENIC
X	22131297	X_22131297_SNP [dm3] X_22729461_SNP [dm6]	C	T	7.662e^-5	0.743	INTRON CR44997	transposable element FlyBase
X	22132423	X_22132423_SNP [dm3] X_22730587_SNP [dm6]	G	C	7.684e^-5	0.743	INTRON CR44997	transposable element FlyBase
3R	21091841	3R_21091841_SNP [dm3] 3R_25266119_SNP [dm6]	G	A	7.686e^-5	0.743	UPSTREAM Aats-gln DOWNSTREAM CR45214 INTRON RIOK2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7390099	3L_7390099_SNP [dm3] 3L_7396999_SNP [dm6]	T	C	7.690e^-5	0.743	SYNONYMOUS_CODING CG32379 DOWNSTREAM CG8563
3L	1933611	3L_1933611_SNP [dm3] 3L_1933611_SNP [dm6]	A	C	7.694e^-5	0.743	DOWNSTREAM CG5687 & 1 other INTERGENIC
3L	3881455	3L_3881455_SNP [dm3] 3L_3881455_SNP [dm6]	G	A	7.709e^-5	0.743	INTERGENIC
X	18372846	X_18372846_SNP [dm3] X_18478813_SNP [dm6]	C	T	7.709e^-5	0.743	INTRON CG32547
2R	10817256	2R_10817256_SNP [dm3] 2R_14929751_SNP [dm6]	C	A	7.770e^-5	0.743	UTR_3_PRIME CG10253 DOWNSTREAM CG10253
3L	2180902	3L_2180902_SNP [dm3] 3L_2180902_SNP [dm6]	A	G	7.788e^-5	0.743	INTERGENIC
X	22130607	X_22130607_SNP [dm3] X_22728771_SNP [dm6]	T	G	7.855e^-5	0.743	INTRON CR44997
2L	1240104	2L_1240104_SNP [dm3] 2L_1240104_SNP [dm6]	C	T	7.881e^-5	0.743	SYNONYMOUS_CODING CG5397	TF binding site mE1_TFBS_chinmo
2R	15675352	2R_15675352_DEL [dm3] 2R_19787847_DEL [dm6]	CTTCAA	T	7.913e^-5	0.743	EXON CR45231
X	22130600	X_22130600_SNP [dm3] X_22728764_SNP [dm6]	C	T	7.991e^-5	0.743	INTRON CR44997
3R	14486329	3R_14486329_SNP [dm3] 3R_18660607_SNP [dm6]	A	C	7.995e^-5	0.743	SYNONYMOUS_CODING CstF-64 DOWNSTREAM Cpsf73	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	14997688	2L_14997688_SNP [dm3] 2L_14997688_SNP [dm6]	C	T	8.043e^-5	0.743	UPSTREAM mol INTERGENIC	TF binding site mE1_TFBS_Trl
X	22129343	X_22129343_SNP [dm3] X_22727507_SNP [dm6]	T	A	8.044e^-5	0.743	INTRON CR44997
2L	2111337	2L_2111337_SNP [dm3] 2L_2111337_SNP [dm6]	C	T	8.046e^-5	0.743	INTERGENIC
2L	14975079	2L_14975079_SNP [dm3] 2L_14975079_SNP [dm6]	C	G	8.109e^-5	0.743	DOWNSTREAM mol & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14490281	3R_14490281_DEL [dm3] 3R_18664559_DEL [dm6]	TTCTATA	T	8.207e^-5	0.743	UPSTREAM CG31231 INTRON Gos28	TF binding site mE1_TFBS_cad
2L	10815986	2L_10815986_SNP [dm3] 2L_10815986_SNP [dm6]	C	T	8.209e^-5	0.743	INTRON Nos
3L	20455867	3L_20455867_SNP [dm3] 3L_20462767_SNP [dm6]	A	G	8.226e^-5	0.743	DOWNSTREAM mag INTRON CG5195
3R	14490179	3R_14490179_SNP [dm3] 3R_18664457_SNP [dm6]	T	C	8.232e^-5	0.743	UPSTREAM Cpsf73 & 1 other INTRON Gos28
3L	12415376	3L_12415376_SNP [dm3] 3L_12422276_SNP [dm6]	A	G	8.258e^-5	0.743	DOWNSTREAM toe INTERGENIC
2L	14975074	2L_14975074_SNP [dm3] 2L_14975074_SNP [dm6]	A	T	8.296e^-5	0.743	DOWNSTREAM mol & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23893015	3R_23893015_INS [dm3] 3R_28067293_INS [dm6]	G	GGAATGATTATTATG...	8.420e^-5	0.743	INTRON CG34362
2R	14661605	2R_14661605_INS [dm3] 2R_18774100_INS [dm6]	A	ACACA	8.470e^-5	0.743	UTR_3_PRIME Mctp
X	22130708	X_22130708_SNP [dm3] X_22728872_SNP [dm6]	G	A	8.491e^-5	0.743	INTRON CR44997
X	20234088	X_20234088_DEL [dm3] X_20363061_DEL [dm6]	ACACAATAATAAATGTATA...	A	8.545e^-5	0.743	INTERGENIC
X	22122549	X_22122549_SNP [dm3] X_22720713_SNP [dm6]	G	T	8.568e^-5	0.743	INTRON CR44997	transposable element FlyBase
2R	7423388	2R_7423388_SNP [dm3] 2R_11535883_SNP [dm6]	A	G	8.649e^-5	0.743	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	2479552	3L_2479552_SNP [dm3] 3L_2479552_SNP [dm6]	A	T	8.662e^-5	0.743	INTRON CG45186
2L	14997519	2L_14997519_SNP [dm3] 2L_14997519_SNP [dm6]	A	T	8.964e^-5	0.743	UTR_5_PRIME mol	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	4199534	2L_4199534_SNP [dm3] 2L_4199534_SNP [dm6]	A	G	8.967e^-5	0.743	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	6544835	X_6544835_DEL [dm3] X_6650802_DEL [dm6]	GGAAAG	G	9.026e^-5	0.743	UTR_3_PRIME pigs	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	24305099	3R_24305099_DEL [dm3] 3R_28479377_DEL [dm6]	TGT	A	9.069e^-5	0.743	INTERGENIC
2R	8845207	2R_8845207_SNP [dm3] 2R_12957702_SNP [dm6]	A	G	9.126e^-5	0.743	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	22133392	X_22133392_SNP [dm3] X_22731556_SNP [dm6]	A	C	9.132e^-5	0.743	INTRON CR44997
3R	13045083	3R_13045083_SNP [dm3] 3R_17219361_SNP [dm6]	C	T	9.145e^-5	0.743	SYNONYMOUS_CODING CG31262
X	13706931	X_13706931_SNP [dm3] X_13812898_SNP [dm6]	C	A	9.219e^-5	0.743	DOWNSTREAM Clic & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
X	22130977	X_22130977_SNP [dm3] X_22729141_SNP [dm6]	A	G	9.221e^-5	0.743	INTRON CR44997
X	2422728	X_2422728_SNP [dm3] X_2528695_SNP [dm6]	G	A	9.261e^-5	0.743	INTRON trol	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	22151297	X_22151297_INS [dm3] X_22749461_INS [dm6]	T	AGTA	9.270e^-5	0.743	INTRON CR44997
X	13006645	X_13006645_SNP [dm3] X_13112612_SNP [dm6]	A	G	9.272e^-5	0.743	UPSTREAM CG43313 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	13439961	2R_13439961_SNP [dm3] 2R_17552456_SNP [dm6]	G	T	9.306e^-5	0.743	NON_SYNONYMOUS_CODING MESR4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10631736	3L_10631736_SNP [dm3] 3L_10638636_SNP [dm6]	C	A	9.329e^-5	0.743	SYNONYMOUS_CODING CG8009 UPSTREAM E_z_	TF binding site BDTNP1_TFBS_Med
2L	12308444	2L_12308444_SNP [dm3] 2L_12308444_SNP [dm6]	G	A	9.380e^-5	0.743	INTRON aret
2L	3668284	2L_3668284_SNP [dm3] 2L_3668284_SNP [dm6]	T	A	9.382e^-5	0.743	SYNONYMOUS_CODING Sfp24Ba DOWNSTREAM CG42463 & 1 other INTRON CG34340
2L	5562262	2L_5562262_SNP [dm3] 2L_5562262_SNP [dm6]	C	A	9.393e^-5	0.743	SYNONYMOUS_CODING GluRIIB	TF binding site mE1_TFBS_cad
X	6136376	X_6136376_SNP [dm3] X_6242343_SNP [dm6]	T	C	9.404e^-5	0.743	INTRON Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	10631716	3L_10631716_SNP [dm3] 3L_10638616_SNP [dm6]	C	T	9.406e^-5	0.743	SYNONYMOUS_CODING CG8009 UPSTREAM E_z_	TF binding site BDTNP1_TFBS_Med
2L	2686003	2L_2686003_SNP [dm3] 2L_2686003_SNP [dm6]	G	A	9.408e^-5	0.743	INTRON CG31690
X	7130552	X_7130552_SNP [dm3] X_7236519_SNP [dm6]	C	A	9.435e^-5	0.743	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	22129415	X_22129415_SNP [dm3] X_22727579_SNP [dm6]	T	C	9.456e^-5	0.743	INTRON CR44997
X	20956436	X_20956436_SNP [dm3] X_21085409_SNP [dm6]	G	T	9.561e^-5	0.743	INTERGENIC
3L	3750441	3L_3750441_SNP [dm3] 3L_3750441_SNP [dm6]	G	A	9.589e^-5	0.743	INTRON CG32264
2R	4950824	2R_4950824_SNP [dm3] 2R_9063319_SNP [dm6]	A	C	9.643e^-5	0.743	INTRON ana	regulatory region REDfly_CRMs
X	22123227	X_22123227_SNP [dm3] X_22721391_SNP [dm6]	C	A	9.768e^-5	0.743	INTRON CR44997	transposable element FlyBase
3R	21124232	3R_21124232_SNP [dm3] 3R_25298510_SNP [dm6]	G	C	9.768e^-5	0.743	NON_SYNONYMOUS_CODING CG31288 UPSTREAM CG31097
3R	14490174	3R_14490174_SNP [dm3] 3R_18664452_SNP [dm6]	G	T	9.827e^-5	0.743	UPSTREAM Cpsf73 & 1 other INTRON Gos28
2R	6680143	2R_6680143_SNP [dm3] 2R_10792638_SNP [dm6]	A	G	9.877e^-5	0.743	INTRON CG33144 & 1 other
2R	18066047	2R_18066047_SNP [dm3] 2R_22178542_SNP [dm6]	A	G	9.886e^-5	0.743	INTRON CG11170
3L	788529	3L_788529_INS [dm3] 3L_788529_INS [dm6]	A	AA	9.887e^-5	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	14490227	3R_14490227_SNP [dm3] 3R_18664505_SNP [dm6]	G	T	9.907e^-5	0.743	UPSTREAM Cpsf73 & 1 other INTRON Gos28	TF binding site mE1_TFBS_cad
2L	13108667	2L_13108667_SNP [dm3] 2L_13108667_SNP [dm6]	T	C	9.930e^-5	0.743	INTRON CG5142
X	22129416	X_22129416_SNP [dm3] X_22727580_SNP [dm6]	T	A	1.006e^-4	0.743	INTRON CR44997
2L	14975064	2L_14975064_SNP [dm3] 2L_14975064_SNP [dm6]	G	T	1.017e^-4	0.743	DOWNSTREAM mol & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13556563	2L_13556563_SNP [dm3] 2L_13556563_SNP [dm6]	T	C	1.017e^-4	0.743	INTRON kuz
2L	16303078	2L_16303078_SNP [dm3] 2L_16303078_SNP [dm6]	G	T	1.019e^-4	0.743	UPSTREAM c_2_M & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	4306703	3L_4306703_SNP [dm3] 3L_4306703_SNP [dm6]	C	T	1.026e^-4	0.743	INTRON dyl
2L	8791320	2L_8791320_SNP [dm3] 2L_8791320_SNP [dm6]	T	C	1.026e^-4	0.743	INTERGENIC
X	22129293	X_22129293_SNP [dm3] X_22727457_SNP [dm6]	T	G	1.031e^-4	0.743	INTRON CR44997	transposable element FlyBase
3L	10526622	3L_10526622_SNP [dm3] 3L_10533522_SNP [dm6]	T	C	1.031e^-4	0.743	INTRON A2bp1
2L	14109887	2L_14109887_SNP [dm3] 2L_14109887_SNP [dm6]	C	T	1.034e^-4	0.743	NON_SYNONYMOUS_CODING CG31769 UPSTREAM CG15293
3L	2079085	3L_2079085_SNP [dm3] 3L_2079085_SNP [dm6]	C	A	1.036e^-4	0.743	INTRON sls
X	5512760	X_5512760_SNP [dm3] X_5618727_SNP [dm6]	C	T	1.037e^-4	0.743	UTR_5_PRIME RhoGAP5A DOWNSTREAM Mlc-c	TF binding site mE1_TFBS_chinmo
2L	2317838	2L_2317838_SNP [dm3] 2L_2317838_SNP [dm6]	C	G	1.041e^-4	0.743	INTRON CG9967 & 1 other
X	13006640	X_13006640_SNP [dm3] X_13112607_SNP [dm6]	C	A	1.041e^-4	0.743	UPSTREAM CG43313 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	22135974	X_22135974_SNP [dm3] X_22734138_SNP [dm6]	G	T	1.051e^-4	0.743	INTRON CR44997
3L	2537423	3L_2537423_DEL [dm3] 3L_2537423_DEL [dm6]	AGGAGCGACCAAAATCGAGA...	A	1.054e^-4	0.743	UPSTREAM Spn INTRON Spn	TF binding site mE1_TFBS_Trl
X	22129292	X_22129292_SNP [dm3] X_22727456_SNP [dm6]	C	T	1.056e^-4	0.743	INTRON CR44997	transposable element FlyBase
3R	23847429	3R_23847429_SNP [dm3] 3R_28021707_SNP [dm6]	T	A	1.058e^-4	0.743	INTERGENIC
3L	2922403	3L_2922403_SNP [dm3] 3L_2922403_SNP [dm6]	C	T	1.070e^-4	0.743	INTRON Shab
3R	14490295	3R_14490295_DEL [dm3] 3R_18664573_DEL [dm6]	AGGATTTCATTT...	A	1.080e^-4	0.743	UPSTREAM CG31231 INTRON Gos28	TF binding site mE1_TFBS_cad
X	22144038	X_22144038_SNP [dm3] X_22742202_SNP [dm6]	A	G	1.083e^-4	0.743	INTRON CR44997	transposable element FlyBase
2R	19122347	2R_19122347_SNP [dm3] 2R_23234824_SNP [dm6]	G	C	1.084e^-4	0.743	DOWNSTREAM CG3092 INTERGENIC
3L	6366588	3L_6366588_SNP [dm3] 3L_6373488_SNP [dm6]	C	T	1.094e^-4	0.743	INTERGENIC
2R	13083997	2R_13083997_SNP [dm3] 2R_17196492_SNP [dm6]	T	C	1.097e^-4	0.743	SYNONYMOUS_CODING CG10950
3R	19147730	3R_19147730_SNP [dm3] 3R_23322008_SNP [dm6]	G	A	1.098e^-4	0.743	INTRON pnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18779392	2R_18779392_SNP [dm3] 2R_22891869_SNP [dm6]	A	G	1.104e^-4	0.743	INTRON MED23
3L	1110621	3L_1110621_DEL [dm3] 3L_1110621_DEL [dm6]	GCAG	G	1.106e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	4515020	3L_4515020_SNP [dm3] 3L_4515020_SNP [dm6]	C	A	1.108e^-4	0.743	SYNONYMOUS_CODING Tie	TF binding site mE1_TFBS_chinmo
3R	10137715	3R_10137715_SNP [dm3] 3R_14311993_SNP [dm6]	G	A	1.110e^-4	0.743	INTRON CG31321	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	13592868	3L_13592868_SNP [dm3] 3L_13599768_SNP [dm6]	C	G	1.115e^-4	0.743	INTRON bru-3 EXON CR45120
3L	719251	3L_719251_DEL [dm3] 3L_719251_DEL [dm6]	GTTGTTGGG	G	1.121e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	3406515	3L_3406515_SNP [dm3] 3L_3406515_SNP [dm6]	T	G	1.122e^-4	0.743	INTRON sty
3L	1110661	3L_1110661_SNP [dm3] 3L_1110661_SNP [dm6]	C	G	1.128e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	4046325	2L_4046325_SNP [dm3] 2L_4046325_SNP [dm6]	T	C	1.135e^-4	0.743	INTRON ed	TF binding site mE1_TFBS_HSA
2R	7710377	2R_7710377_SNP [dm3] 2R_11822872_SNP [dm6]	G	A	1.136e^-4	0.743	INTERGENIC
2L	10564704	2L_10564704_SNP [dm3] 2L_10564704_SNP [dm6]	C	A	1.143e^-4	0.743	INTRON Trim9
3L	2078739	3L_2078739_SNP [dm3] 3L_2078739_SNP [dm6]	C	A	1.149e^-4	0.743	INTRON sls
3R	14488178	3R_14488178_SNP [dm3] 3R_18662456_SNP [dm6]	A	G	1.165e^-4	0.743	SYNONYMOUS_CODING Cpsf73	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	12924359	2L_12924359_SNP [dm3] 2L_12924359_SNP [dm6]	G	C	1.170e^-4	0.743	NON_SYNONYMOUS_CODING ACXA UTR_3_PRIME ACXA
2L	6197508	2L_6197508_SNP [dm3] 2L_6197508_SNP [dm6]	T	C	1.175e^-4	0.743	INTRON CG34380	TF binding site BDTNP1_TFBS_da
X	22123047	X_22123047_SNP [dm3] X_22721211_SNP [dm6]	C	A	1.177e^-4	0.743	INTRON CR44997	transposable element FlyBase
3R	14168356	3R_14168356_DEL [dm3] 3R_18342634_DEL [dm6]	AAATAGTTCACTGATTA...	A	1.180e^-4	0.743	INTRON CG15803
X	22132680	X_22132680_SNP [dm3] X_22730844_SNP [dm6]	A	G	1.183e^-4	0.743	INTRON CR44997	transposable element FlyBase
3L	5741402	3L_5741402_SNP [dm3] 3L_5748302_SNP [dm6]	T	C	1.189e^-4	0.743	UTR_3_PRIME sif
X	12319601	X_12319601_SNP [dm3] X_12425568_SNP [dm6]	A	G	1.191e^-4	0.743	INTERGENIC
X	22121941	X_22121941_SNP [dm3] X_22720105_SNP [dm6]	T	C	1.197e^-4	0.743	INTRON CR44997	transposable element FlyBase
3R	23932923	3R_23932923_SNP [dm3] 3R_28107201_SNP [dm6]	C	A	1.203e^-4	0.743	INTERGENIC	TF binding site mE1_TFBS_eve
2R	16272089	2R_16272089_SNP [dm3] 2R_20384584_SNP [dm6]	C	T	1.206e^-4	0.743	INTERGENIC
2L	3692367	2L_3692367_SNP [dm3] 2L_3692367_SNP [dm6]	A	G	1.211e^-4	0.743	DOWNSTREAM CG3513 & 2 others INTRON CG16704
3R	14490280	3R_14490280_SNP [dm3] 3R_18664558_SNP [dm6]	T	G	1.214e^-4	0.743	UPSTREAM CG31231 INTRON Gos28	TF binding site mE1_TFBS_cad
2R	15708720	2R_15708720_SNP [dm3] 2R_19821215_SNP [dm6]	G	C	1.214e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2L	14222485	2L_14222485_SNP [dm3] 2L_14222485_SNP [dm6]	C	A	1.216e^-4	0.743	INTRON Dyrk2
3R	21119153	3R_21119153_SNP [dm3] 3R_25293431_SNP [dm6]	T	G	1.217e^-4	0.743	UPSTREAM CG31098 DOWNSTREAM CG31102 INTERGENIC
2L	7250232	2L_7250232_SNP [dm3] 2L_7250232_SNP [dm6]	G	A	1.225e^-4	0.743	UPSTREAM Ndae1 DOWNSTREAM CG13786 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	5989263	X_5989263_SNP [dm3] X_6095230_SNP [dm6]	T	C	1.227e^-4	0.743	INTRON Nep1
X	16885211	X_16885211_SNP [dm3] X_16991178_SNP [dm6]	A	G	1.230e^-4	0.743	INTRON CG45002	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	8417780	2R_8417780_SNP [dm3] 2R_12530275_SNP [dm6]	T	C	1.239e^-4	0.743	INTRON fra	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2180717	3L_2180717_SNP [dm3] 3L_2180717_SNP [dm6]	G	A	1.240e^-4	0.743	INTERGENIC
X	20956244	X_20956244_SNP [dm3] X_21085217_SNP [dm6]	A	T	1.244e^-4	0.743	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	14596252	3L_14596252_SNP [dm3] 3L_14603152_SNP [dm6]	T	G	1.251e^-4	0.743	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	16025465	2R_16025465_SNP [dm3] 2R_20137960_SNP [dm6]	T	C	1.259e^-4	0.743	UPSTREAM CR44634 DOWNSTREAM CR44635 EXON CR44636
3R	21977680	3R_21977680_SNP [dm3] 3R_26151958_SNP [dm6]	C	A	1.269e^-4	0.743	INTERGENIC
2L	6221824	2L_6221824_SNP [dm3] 2L_6221824_SNP [dm6]	G	C	1.274e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10735183	2R_10735183_SNP [dm3] 2R_14847678_SNP [dm6]	C	A	1.276e^-4	0.743	SYNONYMOUS_CODING CG10209 DOWNSTREAM SMC2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3L	14596098	3L_14596098_SNP [dm3] 3L_14602998_SNP [dm6]	T	G	1.278e^-4	0.743	INTERGENIC	TF binding site mE1_TFBS_Kr
X	22133397	X_22133397_SNP [dm3] X_22731561_SNP [dm6]	G	A	1.282e^-4	0.743	INTRON CR44997
2L	14222492	2L_14222492_SNP [dm3] 2L_14222492_SNP [dm6]	G	A	1.283e^-4	0.743	INTRON Dyrk2
3L	14310608	3L_14310608_SNP [dm3] 3L_14317508_SNP [dm6]	G	A	1.293e^-4	0.743	INTRON fz
2L	2309555	2L_2309555_SNP [dm3] 2L_2309555_SNP [dm6]	C	T	1.294e^-4	0.743	SYNONYMOUS_CODING CG9967 DOWNSTREAM CG16995	TF binding site mE1_TFBS_chinmo
2R	4484333	2R_4484333_SNP [dm3] 2R_8596828_SNP [dm6]	A	T	1.295e^-4	0.743	DOWNSTREAM CG8735 INTERGENIC
2R	14540002	2R_14540002_SNP [dm3] 2R_18652497_SNP [dm6]	T	A	1.296e^-4	0.743	INTRON SP2637	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	1241151	2L_1241151_SNP [dm3] 2L_1241151_SNP [dm6]	A	C	1.297e^-4	0.743	NON_SYNONYMOUS_CODING CG5397	TF binding site mE1_TFBS_chinmo
2L	7372112	2L_7372112_INS [dm3] 2L_7372112_INS [dm6]	G	GT	1.300e^-4	0.743	INTRON Wnt10	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	18061647	3L_18061647_SNP [dm3] 3L_18068547_SNP [dm6]	C	G	1.302e^-4	0.743	DOWNSTREAM CG44006 INTERGENIC
X	2479016	X_2479016_SNP [dm3] X_2584983_SNP [dm6]	T	A	1.303e^-4	0.743	UPSTREAM wds INTRON CG13760	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	5261077	2L_5261077_SNP [dm3] 2L_5261077_SNP [dm6]	A	G	1.304e^-4	0.743	INTRON tkv
3L	18138873	3L_18138873_SNP [dm3] 3L_18145773_SNP [dm6]	G	T	1.313e^-4	0.743	DOWNSTREAM gk INTERGENIC
3L	1110677	3L_1110677_SNP [dm3] 3L_1110677_SNP [dm6]	G	A	1.317e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	14539801	2R_14539801_SNP [dm3] 2R_18652296_SNP [dm6]	A	G	1.323e^-4	0.743	INTRON SP2637	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	13618840	X_13618840_SNP [dm3] X_13724807_SNP [dm6]	A	G	1.329e^-4	0.743	SYNONYMOUS_CODING mus101	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	15170953	X_15170953_SNP [dm3] X_15276920_SNP [dm6]	C	G	1.331e^-4	0.743	INTERGENIC
2R	19425782	2R_19425782_SNP [dm3] 2R_23538259_SNP [dm6]	T	C	1.334e^-4	0.743	UTR_5_PRIME bw DOWNSTREAM ppk3	TF binding site mE1_TFBS_chinmo
X	22117826	X_22117826_SNP [dm3] X_22715990_SNP [dm6]	T	C	1.339e^-4	0.743	INTRON CR44997
X	22124626	X_22124626_SNP [dm3] X_22722790_SNP [dm6]	T	C	1.339e^-4	0.743	INTRON CR44997	transposable element FlyBase
X	5038665	X_5038665_SNP [dm3] X_5144632_SNP [dm6]	T	C	1.342e^-4	0.743	INTRON rg & 1 other
3L	2186719	3L_2186719_SNP [dm3] 3L_2186719_SNP [dm6]	C	T	1.343e^-4	0.743	SYNONYMOUS_CODING CG13810	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16789936	2R_16789936_SNP [dm3] 2R_20902431_SNP [dm6]	A	G	1.347e^-4	0.743	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	13229501	2L_13229501_SNP [dm3] 2L_13229501_SNP [dm6]	T	G	1.347e^-4	0.743	UPSTREAM CG16815 DOWNSTREAM CG16813 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
2R	6028954	2R_6028954_SNP [dm3] 2R_10141449_SNP [dm6]	C	A	1.357e^-4	0.743	SYNONYMOUS_CODING Or46a UPSTREAM CR43467 & 1 other INTRON Or46a EXON CR43467	TF binding site mE1_TFBS_sens
2R	17110151	2R_17110151_SNP [dm3] 2R_21222646_SNP [dm6]	C	A	1.363e^-4	0.743	INTRON ASPP	TF binding site mE1_TFBS_cad
2L	14907685	2L_14907685_DEL [dm3] 2L_14907685_DEL [dm6]	CTAAACATTTAACTTC...	C	1.364e^-4	0.743	UTR_3_PRIME CG42313
3R	24311379	3R_24311379_SNP [dm3] 3R_28485657_SNP [dm6]	G	A	1.365e^-4	0.743	NON_SYNONYMOUS_CODING CG1894
3R	14489999	3R_14489999_SNP [dm3] 3R_18664277_SNP [dm6]	T	C	1.372e^-4	0.743	UPSTREAM Cpsf73 INTRON Gos28	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	9747162	2R_9747162_SNP [dm3] 2R_13859657_SNP [dm6]	A	C	1.374e^-4	0.743	SYNONYMOUS_CODING Uba3 UPSTREAM tum DOWNSTREAM CG16935	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6725056	3L_6725056_SNP [dm3] 3L_6731956_SNP [dm6]	C	G	1.377e^-4	0.743	SYNONYMOUS_CODING dikar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1040276	3L_1040276_SNP [dm3] 3L_1040276_SNP [dm6]	C	T	1.381e^-4	0.743	INTRON bab1	TF binding site mE1_TFBS_cad
2R	10332403	2R_10332403_SNP [dm3] 2R_14444898_SNP [dm6]	G	T	1.388e^-4	0.743	INTRON Oaz
X	8679638	X_8679638_SNP [dm3] X_8785605_SNP [dm6]	A	C	1.391e^-4	0.743	UPSTREAM Lim1 INTRON Lim1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
3R	14486560	3R_14486560_SNP [dm3] 3R_18660838_SNP [dm6]	C	T	1.393e^-4	0.743	SYNONYMOUS_CODING CstF-64 DOWNSTREAM Cpsf73	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	5017579	2L_5017579_SNP [dm3] 2L_5017579_SNP [dm6]	T	G	1.394e^-4	0.743	SYNONYMOUS_CODING vkg	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17109593	2R_17109593_SNP [dm3] 2R_21222088_SNP [dm6]	G	C	1.397e^-4	0.743	INTRON ASPP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17110012	2R_17110012_SNP [dm3] 2R_21222507_SNP [dm6]	A	C	1.397e^-4	0.743	INTRON ASPP	TF binding site mE1_TFBS_cad
X	22124349	X_22124349_SNP [dm3] X_22722513_SNP [dm6]	G	A	1.398e^-4	0.743	INTRON CR44997	transposable element FlyBase
X	22122014	X_22122014_SNP [dm3] X_22720178_SNP [dm6]	C	A	1.401e^-4	0.743	INTRON CR44997	transposable element FlyBase
3L	7402251	3L_7402251_SNP [dm3] 3L_7409151_SNP [dm6]	C	T	1.403e^-4	0.743	EXON CR44525
2L	9517421	2L_9517421_SNP [dm3] 2L_9517421_SNP [dm6]	C	T	1.406e^-4	0.743	SYNONYMOUS_CODING CG33298
2L	11937947	2L_11937947_SNP [dm3] 2L_11937947_SNP [dm6]	G	T	1.408e^-4	0.743	UPSTREAM Or33c DOWNSTREAM Or33b INTERGENIC	TF binding site mE1_TFBS_cad
3R	26006780	3R_26006780_SNP [dm3] 3R_30181058_SNP [dm6]	T	A	1.410e^-4	0.743	UTR_3_PRIME Bet5 DOWNSTREAM CG15530
3L	13723103	3L_13723103_SNP [dm3] 3L_13730003_SNP [dm6]	A	G	1.415e^-4	0.743	INTRON bru-3
2R	6685148	2R_6685148_DEL [dm3] 2R_10797643_DEL [dm6]	TTG	CA	1.416e^-4	0.743	INTRON CG33144
2R	6685153	2R_6685153_MNP [dm3] 2R_10797648_MNP [dm6]	CATT	TTCA	1.416e^-4	0.743	INTRON CG33144
3L	2181328	3L_2181328_SNP [dm3] 3L_2181328_SNP [dm6]	G	T	1.417e^-4	0.743	INTERGENIC
X	22134311	X_22134311_SNP [dm3] X_22732475_SNP [dm6]	T	A	1.417e^-4	0.743	INTRON CR44997
3L	10632317	3L_10632317_SNP [dm3] 3L_10639217_SNP [dm6]	G	A	1.420e^-4	0.743	NON_SYNONYMOUS_CODING CG8009 SPLICE_SITE_REGION CG8009 UPSTREAM CG18628
X	20409863	X_20409863_SNP [dm3] X_20538836_SNP [dm6]	C	G	1.421e^-4	0.743	INTRON RunxB
2L	12156186	2L_12156186_SNP [dm3] 2L_12156186_SNP [dm6]	T	A	1.429e^-4	0.743	INTRON CG31760
X	20956381	X_20956381_SNP [dm3] X_21085354_SNP [dm6]	A	T	1.435e^-4	0.743	INTERGENIC
2L	2111329	2L_2111329_INS [dm3] 2L_2111329_INS [dm6]	A	AA	1.439e^-4	0.743	INTERGENIC
2R	8887836	2R_8887836_SNP [dm3] 2R_13000331_SNP [dm6]	C	T	1.445e^-4	0.743	SYNONYMOUS_CODING Su_z_2
2L	14997486	2L_14997486_SNP [dm3] 2L_14997486_SNP [dm6]	T	A	1.446e^-4	0.743	UTR_5_PRIME mol INTRON mol	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	14646737	3L_14646737_SNP [dm3] 3L_14653637_SNP [dm6]	G	T	1.450e^-4	0.743	INTRON dlp
3R	24304860	3R_24304860_SNP [dm3] 3R_28479138_SNP [dm6]	C	T	1.453e^-4	0.743	INTERGENIC
2L	6859205	2L_6859205_SNP [dm3] 2L_6859205_SNP [dm6]	T	A	1.461e^-4	0.743	SYNONYMOUS_CODING l_2_k09022	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	22134443	X_22134443_SNP [dm3] X_22732607_SNP [dm6]	C	T	1.466e^-4	0.743	INTRON CR44997
3L	12433131	3L_12433131_SNP [dm3] 3L_12440031_SNP [dm6]	C	T	1.467e^-4	0.743	INTERGENIC
3R	18151295	3R_18151295_SNP [dm3] 3R_22325573_SNP [dm6]	G	C	1.469e^-4	0.743	INTERGENIC
2L	13535302	2L_13535302_INS [dm3] 2L_13535302_INS [dm6]	T	CTTTTCA	1.470e^-4	0.743	UTR_3_PRIME CG15638 INTRON B4
3L	1610365	3L_1610365_SNP [dm3] 3L_1610365_SNP [dm6]	G	C	1.471e^-4	0.743	DOWNSTREAM CG12105 INTRON CG33791 & 1 other
3R	24290900	3R_24290900_SNP [dm3] 3R_28465178_SNP [dm6]	C	T	1.478e^-4	0.743	INTRON beat-VI
X	10481738	X_10481738_SNP [dm3] X_10587705_SNP [dm6]	C	T	1.480e^-4	0.743	INTERGENIC
3R	3793726	3R_3793726_SNP [dm3] 3R_7968004_SNP [dm6]	T	C	1.483e^-4	0.743	UPSTREAM dsx INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	4046346	2L_4046346_SNP [dm3] 2L_4046346_SNP [dm6]	C	A	1.485e^-4	0.743	INTRON ed	TF binding site mE1_TFBS_HSA
3L	2606394	3L_2606394_SNP [dm3] 3L_2606394_SNP [dm6]	C	T	1.488e^-4	0.743	INTRON Pxn
3L	14646727	3L_14646727_SNP [dm3] 3L_14653627_SNP [dm6]	C	G	1.496e^-4	0.743	INTRON dlp
3L	4009347	3L_4009347_SNP [dm3] 3L_4009347_SNP [dm6]	C	T	1.497e^-4	0.743	INTERGENIC
2L	4199960	2L_4199960_SNP [dm3] 2L_4199960_SNP [dm6]	G	A	1.497e^-4	0.743	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17109779	2R_17109779_SNP [dm3] 2R_21222274_SNP [dm6]	A	G	1.500e^-4	0.743	INTRON ASPP	TF binding site mE1_TFBS_cad
2R	11693161	2R_11693161_SNP [dm3] 2R_15805656_SNP [dm6]	C	T	1.502e^-4	0.743	INTRON tun & 1 other
3L	12408673	3L_12408673_SNP [dm3] 3L_12415573_SNP [dm6]	G	A	1.502e^-4	0.743	SYNONYMOUS_CODING ArfGAP1 UPSTREAM CG32103	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	14975048	2L_14975048_SNP [dm3] 2L_14975048_SNP [dm6]	T	C	1.505e^-4	0.743	DOWNSTREAM mol & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17172776	2R_17172776_SNP [dm3] 2R_21285271_SNP [dm6]	T	C	1.511e^-4	0.743	UTR_3_PRIME MFS16 & 1 other
3R	8117003	3R_8117003_SNP [dm3] 3R_12291281_SNP [dm6]	C	T	1.520e^-4	0.743	INTRON svp	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	4046250	2L_4046250_SNP [dm3] 2L_4046250_SNP [dm6]	G	A	1.526e^-4	0.743	INTRON ed	TF binding site mE1_TFBS_HSA
2R	9509721	2R_9509721_SNP [dm3] 2R_13622216_SNP [dm6]	A	T	1.527e^-4	0.743	UPSTREAM fas INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3L	8557715	3L_8557715_SNP [dm3] 3L_8564615_SNP [dm6]	C	T	1.528e^-4	0.743	SYNONYMOUS_CODING rhea UTR_3_PRIME rhea	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	2479005	X_2479005_SNP [dm3] X_2584972_SNP [dm6]	G	A	1.538e^-4	0.743	INTRON CG13760	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	1626985	X_1626985_SNP [dm3] X_1732952_SNP [dm6]	C	T	1.541e^-4	0.743	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	5950498	2R_5950498_SNP [dm3] 2R_10062993_SNP [dm6]	A	G	1.542e^-4	0.743	SYNONYMOUS_CODING magu DOWNSTREAM CG2292
2L	15212876	2L_15212876_SNP [dm3] 2L_15212876_SNP [dm6]	T	C	1.544e^-4	0.743	INTERGENIC
2L	13119620	2L_13119620_SNP [dm3] 2L_13119620_SNP [dm6]	G	A	1.552e^-4	0.743	UPSTREAM CR44198 INTRON CG43050	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	11863373	3L_11863373_SNP [dm3] 3L_11870273_SNP [dm6]	G	T	1.557e^-4	0.743	DOWNSTREAM CG5906 INTRON CG44837	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7390953	3L_7390953_SNP [dm3] 3L_7397853_SNP [dm6]	G	T	1.562e^-4	0.743	NON_SYNONYMOUS_CODING CG32379 UPSTREAM CG8562	TF binding site mE1_TFBS_cad
3R	21188207	3R_21188207_SNP [dm3] 3R_25362485_SNP [dm6]	G	T	1.564e^-4	0.743	INTRON Fur1
X	7129488	X_7129488_DEL [dm3] X_7235455_DEL [dm6]	ATT	A	1.568e^-4	0.743	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
X	7129491	X_7129491_DEL [dm3] X_7235458_DEL [dm6]	GA	G	1.568e^-4	0.743	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	2156107	3L_2156107_SNP [dm3] 3L_2156107_SNP [dm6]	T	A	1.569e^-4	0.743	INTRON CG15822
2R	16471467	2R_16471467_SNP [dm3] 2R_20583962_SNP [dm6]	A	G	1.572e^-4	0.743	UPSTREAM qsm & 2 others DOWNSTREAM mir-312 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
2L	9946592	2L_9946592_SNP [dm3] 2L_9946592_SNP [dm6]	G	A	1.572e^-4	0.743	INTRON CG5853	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	14013879	2L_14013879_DEL [dm3] 2L_14013879_DEL [dm6]	TAT	T	1.575e^-4	0.743	UTR_5_PRIME bgm INTRON bgm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	13556467	2L_13556467_SNP [dm3] 2L_13556467_SNP [dm6]	C	A	1.576e^-4	0.743	INTRON kuz
2L	9061993	2L_9061993_SNP [dm3] 2L_9061993_SNP [dm6]	T	C	1.579e^-4	0.743	INTRON CG31708	TF binding site BDTNP1_TFBS_twi
3R	22721243	3R_22721243_SNP [dm3] 3R_26895521_SNP [dm6]	T	A	1.587e^-4	0.743	INTRON T48	regulatory region REDfly_CRMs
3L	10491723	3L_10491723_SNP [dm3] 3L_10498623_SNP [dm6]	G	A	1.589e^-4	0.743	INTRON A2bp1
X	22126115	X_22126115_SNP [dm3] X_22724279_SNP [dm6]	C	T	1.589e^-4	0.743	INTRON CR44997	transposable element FlyBase
X	1625864	X_1625864_SNP [dm3] X_1731831_SNP [dm6]	A	T	1.596e^-4	0.744	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	22136366	X_22136366_DEL [dm3] X_22734530_DEL [dm6]	CAACAAACCTTATTC...	C	1.599e^-4	0.744	INTRON CR44997
2R	16787178	2R_16787178_SNP [dm3] 2R_20899673_SNP [dm6]	T	G	1.610e^-4	0.747	INTRON otp	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2L	17109459	2L_17109459_SNP [dm3] 2L_17109459_SNP [dm6]	C	G	1.617e^-4	0.747	INTERGENIC
3L	1095657	3L_1095657_SNP [dm3] 3L_1095657_SNP [dm6]	G	C	1.618e^-4	0.747	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11275596	3L_11275596_SNP [dm3] 3L_11282496_SNP [dm6]	A	C	1.623e^-4	0.747	INTERGENIC
X	21266542	X_21266542_SNP [dm3] X_21395515_SNP [dm6]	T	A	1.625e^-4	0.747	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9365991	2R_9365991_INS [dm3] 2R_13478486_INS [dm6]	A	AGGAAAT	1.636e^-4	0.75	DOWNSTREAM CG43192 INTRON arr
3R	14490069	3R_14490069_SNP [dm3] 3R_18664347_SNP [dm6]	G	A	1.650e^-4	0.755	UPSTREAM Cpsf73 INTRON Gos28
2R	10040230	2R_10040230_SNP [dm3] 2R_14152725_SNP [dm6]	A	G	1.660e^-4	0.755	UPSTREAM pea & 1 other INTRON Rcd1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
X	22130812	X_22130812_SNP [dm3] X_22728976_SNP [dm6]	C	T	1.665e^-4	0.755	INTRON CR44997
2L	4046351	2L_4046351_SNP [dm3] 2L_4046351_SNP [dm6]	T	G	1.666e^-4	0.755	INTRON ed	TF binding site mE1_TFBS_HSA
2L	1238386	2L_1238386_SNP [dm3] 2L_1238386_SNP [dm6]	C	T	1.670e^-4	0.755	INTERGENIC
X	22122763	X_22122763_SNP [dm3] X_22720927_SNP [dm6]	C	T	1.682e^-4	0.755	INTRON CR44997	transposable element FlyBase
3L	10631766	3L_10631766_SNP [dm3] 3L_10638666_SNP [dm6]	T	C	1.685e^-4	0.755	SYNONYMOUS_CODING CG8009 UPSTREAM E_z_	TF binding site BDTNP1_TFBS_Med
2L	5342705	2L_5342705_SNP [dm3] 2L_5342705_SNP [dm6]	T	A	1.688e^-4	0.755	UPSTREAM CG12512 INTERGENIC
2R	14658612	2R_14658612_SNP [dm3] 2R_18771107_SNP [dm6]	A	G	1.689e^-4	0.755	UPSTREAM Mctp DOWNSTREAM tRNA:CR30229 INTRON Mctp
3L	2389413	3L_2389413_SNP [dm3] 3L_2389413_SNP [dm6]	T	C	1.704e^-4	0.755	SYNONYMOUS_CODING CG42787 DOWNSTREAM CG32299 & 1 other INTRON CG45186
3L	14477918	3L_14477918_SNP [dm3] 3L_14484818_SNP [dm6]	T	A	1.706e^-4	0.755	INTRON bbg
2L	3779268	2L_3779268_SNP [dm3] 2L_3779268_SNP [dm6]	T	C	1.714e^-4	0.755	START_GAINED bowl UTR_5_PRIME bowl INTRON bowl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	22130814	X_22130814_INS [dm3] X_22728978_INS [dm6]	A	ATTTTCTGTTTACTACATG...	1.717e^-4	0.755	INTRON CR44997
3L	2399422	3L_2399422_SNP [dm3] 3L_2399422_SNP [dm6]	A	G	1.718e^-4	0.755	INTRON CG45186
3R	8105875	3R_8105875_SNP [dm3] 3R_12280153_SNP [dm6]	A	G	1.724e^-4	0.755	UPSTREAM svp INTRON svp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	14669864	3L_14669864_SNP [dm3] 3L_14676764_SNP [dm6]	T	C	1.734e^-4	0.755	INTRON ome & 1 other
3R	11481412	3R_11481412_SNP [dm3] 3R_15655690_SNP [dm6]	A	C	1.734e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	22124619	X_22124619_SNP [dm3] X_22722783_SNP [dm6]	A	G	1.745e^-4	0.755	INTRON CR44997	transposable element FlyBase
2R	17124091	2R_17124091_INS [dm3] 2R_21236586_INS [dm6]	C	CGC	1.754e^-4	0.755	INTRON ASPP	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16711573	2R_16711573_SNP [dm3] 2R_20824068_SNP [dm6]	T	C	1.763e^-4	0.755	SYNONYMOUS_CODING insc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	22121902	X_22121902_SNP [dm3] X_22720066_SNP [dm6]	G	A	1.766e^-4	0.755	INTRON CR44997	transposable element FlyBase
3L	10632238	3L_10632238_SNP [dm3] 3L_10639138_SNP [dm6]	T	A	1.774e^-4	0.755	UPSTREAM CG18628 INTRON CG8009
2R	2581842	2R_2581842_SNP [dm3] 2R_6694337_SNP [dm6]	G	A	1.781e^-4	0.755	NON_SYNONYMOUS_CODING CG3270 DOWNSTREAM Mob4	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19128212	2R_19128212_SNP [dm3] 2R_23240689_SNP [dm6]	G	A	1.782e^-4	0.755	INTERGENIC
2L	15401488	2L_15401488_SNP [dm3] 2L_15401488_SNP [dm6]	C	A	1.783e^-4	0.755	UPSTREAM CR45374 INTERGENIC
3R	16951737	3R_16951737_SNP [dm3] 3R_21126015_SNP [dm6]	G	A	1.788e^-4	0.755	INTRON slmb	TF binding site BDTNP1_TFBS_dl
3L	1933598	3L_1933598_SNP [dm3] 3L_1933598_SNP [dm6]	A	T	1.792e^-4	0.755	UTR_3_PRIME Dbx DOWNSTREAM CG5687
2R	18779081	2R_18779081_SNP [dm3] 2R_22891558_SNP [dm6]	C	T	1.793e^-4	0.755	SYNONYMOUS_CODING MED23	TF binding site mE1_TFBS_cad
X	5830530	X_5830530_SNP [dm3] X_5936497_SNP [dm6]	G	T	1.795e^-4	0.755	INTRON CG3726
2R	15708222	2R_15708222_SNP [dm3] 2R_19820717_SNP [dm6]	A	G	1.801e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_Kr
3L	14596244	3L_14596244_SNP [dm3] 3L_14603144_SNP [dm6]	T	A	1.801e^-4	0.755	INTERGENIC	TF binding site mE1_TFBS_Kr
X	22125022	X_22125022_SNP [dm3] X_22723186_SNP [dm6]	C	A	1.811e^-4	0.755	INTRON CR44997	transposable element FlyBase
2R	19680686	2R_19680686_INS [dm3] 2R_23793163_INS [dm6]	A	AATTTTTAAATGA...	1.813e^-4	0.755	INTRON CG9850
3R	25368425	3R_25368425_SNP [dm3] 3R_29542703_SNP [dm6]	A	C	1.821e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13119010	2L_13119010_SNP [dm3] 2L_13119010_SNP [dm6]	A	G	1.821e^-4	0.755	UPSTREAM CG43050 EXON CR44198
2L	4045352	2L_4045352_SNP [dm3] 2L_4045352_SNP [dm6]	G	A	1.823e^-4	0.755	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	22138996	X_22138996_SNP [dm3] X_22737160_SNP [dm6]	A	C	1.835e^-4	0.755	INTRON CR44997
2L	3118256	2L_3118256_SNP [dm3] 2L_3118256_SNP [dm6]	A	T	1.836e^-4	0.755	INTRON toc
2L	14907896	2L_14907896_SNP [dm3] 2L_14907896_SNP [dm6]	T	C	1.838e^-4	0.755	UTR_3_PRIME CG42313
2L	6804369	2L_6804369_SNP [dm3] 2L_6804369_SNP [dm6]	T	G	1.844e^-4	0.755	UTR_3_PRIME CG11236 & 1 other DOWNSTREAM CG17375	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	16130004	X_16130004_SNP [dm3] X_16235971_SNP [dm6]	G	C	1.847e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	2078751	3L_2078751_SNP [dm3] 3L_2078751_SNP [dm6]	G	A	1.849e^-4	0.755	INTRON sls
2L	11328204	2L_11328204_SNP [dm3] 2L_11328204_SNP [dm6]	T	A	1.852e^-4	0.755	INTERGENIC
2L	5255061	2L_5255061_SNP [dm3] 2L_5255061_SNP [dm6]	G	T	1.855e^-4	0.755	INTRON tkv
2R	10040372	2R_10040372_SNP [dm3] 2R_14152867_SNP [dm6]	G	A	1.859e^-4	0.755	SYNONYMOUS_CODING Rcd1 UPSTREAM pea & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Ubx
3L	14669853	3L_14669853_SNP [dm3] 3L_14676753_SNP [dm6]	T	A	1.866e^-4	0.755	INTRON ome & 1 other
2R	17111423	2R_17111423_SNP [dm3] 2R_21223918_SNP [dm6]	G	T	1.866e^-4	0.755	UPSTREAM ASPP INTRON ASPP
2R	14539815	2R_14539815_SNP [dm3] 2R_18652310_SNP [dm6]	G	C	1.867e^-4	0.755	INTRON SP2637	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	21909380	X_21909380_SNP [dm3] X_22507544_SNP [dm6]	G	A	1.878e^-4	0.755	UTR_3_PRIME l_1_G0196
X	13006165	X_13006165_SNP [dm3] X_13112132_SNP [dm6]	T	C	1.878e^-4	0.755	UTR_5_PRIME CG43313	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	1610588	3L_1610588_SNP [dm3] 3L_1610588_SNP [dm6]	T	A	1.880e^-4	0.755	DOWNSTREAM CG12105 INTRON CG33791 & 1 other
2R	9509723	2R_9509723_SNP [dm3] 2R_13622218_SNP [dm6]	A	T	1.886e^-4	0.755	UPSTREAM fas INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3R	14490270	3R_14490270_SNP [dm3] 3R_18664548_SNP [dm6]	A	T	1.891e^-4	0.755	UPSTREAM Cpsf73 & 1 other INTRON Gos28	TF binding site mE1_TFBS_cad
3L	2606555	3L_2606555_SNP [dm3] 3L_2606555_SNP [dm6]	C	T	1.906e^-4	0.755	INTRON Pxn
X	11894088	X_11894088_SNP [dm3] X_12000055_SNP [dm6]	C	G	1.908e^-4	0.755	INTRON fw
X	22131854	X_22131854_SNP [dm3] X_22730018_SNP [dm6]	A	T	1.910e^-4	0.755	INTRON CR44997	transposable element FlyBase
X	18051001	X_18051001_SNP [dm3] X_18156968_SNP [dm6]	A	C	1.914e^-4	0.755	INTRON Frq1
2L	8791523	2L_8791523_SNP [dm3] 2L_8791523_SNP [dm6]	G	A	1.916e^-4	0.755	INTERGENIC
X	22146570	X_22146570_SNP [dm3] X_22744734_SNP [dm6]	T	C	1.922e^-4	0.755	INTRON CR44997	transposable element FlyBase
X	22130822	X_22130822_SNP [dm3] X_22728986_SNP [dm6]	T	C	1.931e^-4	0.755	INTRON CR44997
X	17299219	X_17299219_SNP [dm3] X_17405186_SNP [dm6]	G	A	1.932e^-4	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19585917	X_19585917_SNP [dm3] X_19691884_SNP [dm6]	T	C	1.932e^-4	0.755	SYNONYMOUS_CODING Mer	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7249935	2L_7249935_SNP [dm3] 2L_7249935_SNP [dm6]	A	T	1.933e^-4	0.755	UPSTREAM Ndae1 DOWNSTREAM CG13786 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	14477931	3L_14477931_SNP [dm3] 3L_14484831_SNP [dm6]	T	G	1.934e^-4	0.755	INTRON bbg
2L	9438897	2L_9438897_SNP [dm3] 2L_9438897_SNP [dm6]	A	G	1.937e^-4	0.755	INTRON numb
X	22120976	X_22120976_SNP [dm3] X_22719140_SNP [dm6]	A	G	1.938e^-4	0.755	INTRON CR44997
2R	14092998	2R_14092998_SNP [dm3] 2R_18205493_SNP [dm6]	G	A	1.941e^-4	0.755	INTERGENIC
3L	6367933	3L_6367933_SNP [dm3] 3L_6374833_SNP [dm6]	G	A	1.948e^-4	0.755	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	1026105	2L_1026105_SNP [dm3] 2L_1026105_SNP [dm6]	A	G	1.950e^-4	0.755	UTR_3_PRIME CG4375 INTRON IA-2
3R	14490072	3R_14490072_SNP [dm3] 3R_18664350_SNP [dm6]	T	C	1.955e^-4	0.755	UPSTREAM Cpsf73 INTRON Gos28
2L	16238980	2L_16238980_SNP [dm3] 2L_16238980_SNP [dm6]	G	A	1.956e^-4	0.755	INTRON CG42817
2L	13556760	2L_13556760_SNP [dm3] 2L_13556760_SNP [dm6]	A	G	1.960e^-4	0.755	INTRON kuz
2L	3438942	2L_3438942_DEL [dm3] 2L_3438942_DEL [dm6]	TGTTAGCT	T	1.964e^-4	0.755	INTERGENIC
2L	4046374	2L_4046374_SNP [dm3] 2L_4046374_SNP [dm6]	G	A	1.965e^-4	0.755	INTRON ed	TF binding site mE1_TFBS_HSA
3R	2347175	3R_2347175_SNP [dm3] 3R_6521453_SNP [dm6]	G	A	1.968e^-4	0.755	INTERGENIC
2L	13556446	2L_13556446_SNP [dm3] 2L_13556446_SNP [dm6]	T	C	1.970e^-4	0.755	INTRON kuz
2R	12474693	2R_12474693_DEL [dm3] 2R_16587188_DEL [dm6]	AATA	A	1.976e^-4	0.755	UTR_3_PRIME CG8311 DOWNSTREAM RpLP2	TF binding site BDTNP1_TFBS_dl
3R	23847433	3R_23847433_DEL [dm3] 3R_28021711_DEL [dm6]	AGAAATAAAGT...	A	1.994e^-4	0.755	INTERGENIC
2R	17453438	2R_17453438_SNP [dm3] 2R_21565933_SNP [dm6]	A	T	2.000e^-4	0.755	INTRON CG10440
3R	24304857	3R_24304857_SNP [dm3] 3R_28479135_SNP [dm6]	A	G	2.003e^-4	0.755	INTERGENIC
2L	17131737	2L_17131737_SNP [dm3] 2L_17131737_SNP [dm6]	A	G	2.004e^-4	0.755	INTRON beat-IIIa & 1 other
3L	11863370	3L_11863370_SNP [dm3] 3L_11870270_SNP [dm6]	C	T	2.007e^-4	0.755	DOWNSTREAM CG5906 INTRON CG44837	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	17261411	2L_17261411_SNP [dm3] 2L_17261411_SNP [dm6]	G	T	2.008e^-4	0.755	UPSTREAM beat-IIIc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2833704	3L_2833704_SNP [dm3] 3L_2833704_SNP [dm6]	T	A	2.011e^-4	0.755	INTRON CG43444
3L	16751403	3L_16751403_SNP [dm3] 3L_16758303_SNP [dm6]	G	C	2.019e^-4	0.755	INTERGENIC
2L	4328212	2L_4328212_SNP [dm3] 2L_4328212_SNP [dm6]	T	C	2.020e^-4	0.755	INTRON CG16857
2L	2309150	2L_2309150_SNP [dm3] 2L_2309150_SNP [dm6]	A	G	2.021e^-4	0.755	SYNONYMOUS_CODING CG9967 DOWNSTREAM CG16995	TF binding site mE1_TFBS_chinmo
3L	2180910	3L_2180910_SNP [dm3] 3L_2180910_SNP [dm6]	T	A	2.034e^-4	0.755	INTERGENIC
3L	2552131	3L_2552131_SNP [dm3] 3L_2552131_SNP [dm6]	C	G	2.037e^-4	0.755	INTRON Spn
2R	9348261	2R_9348261_DEL [dm3] 2R_13460756_DEL [dm6]	GTACA	G	2.045e^-4	0.755	INTRON arr	TF binding site mE1_TFBS_chinmo
3R	11526637	3R_11526637_SNP [dm3] 3R_15700915_SNP [dm6]	C	A	2.052e^-4	0.755	INTERGENIC
X	22130619	X_22130619_SNP [dm3] X_22728783_SNP [dm6]	C	T	2.052e^-4	0.755	INTRON CR44997
3R	22025752	3R_22025752_SNP [dm3] 3R_26200030_SNP [dm6]	G	A	2.054e^-4	0.755	INTRON CR44320	TF binding site BDTNP1_TFBS_twi
3L	19979299	3L_19979299_SNP [dm3] 3L_19986199_SNP [dm6]	A	G	2.056e^-4	0.755	SYNONYMOUS_CODING schuy UPSTREAM hale
2L	13118852	2L_13118852_SNP [dm3] 2L_13118852_SNP [dm6]	G	C	2.065e^-4	0.755	UPSTREAM CG43050 DOWNSTREAM CR44198 INTERGENIC
2L	7373235	2L_7373235_SNP [dm3] 2L_7373235_SNP [dm6]	C	T	2.066e^-4	0.755	INTRON Wnt10	TF binding site mE1_TFBS_cad
X	8679631	X_8679631_SNP [dm3] X_8785598_SNP [dm6]	T	C	2.067e^-4	0.755	UPSTREAM Lim1 INTRON Lim1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
2R	7681769	2R_7681769_SNP [dm3] 2R_11794264_SNP [dm6]	G	C	2.071e^-4	0.755	INTRON ths	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	20908402	3L_20908402_SNP [dm3] 3L_20915302_SNP [dm6]	C	A	2.075e^-4	0.755	INTERGENIC
2R	6591874	2R_6591874_SNP [dm3] 2R_10704369_SNP [dm6]	G	A	2.076e^-4	0.755	INTRON stan
2L	14906498	2L_14906498_SNP [dm3] 2L_14906498_SNP [dm6]	A	G	2.077e^-4	0.755	DOWNSTREAM CG42313 INTERGENIC
X	20231103	X_20231103_SNP [dm3] X_20360076_SNP [dm6]	A	C	2.079e^-4	0.755	INTERGENIC
2L	7357648	2L_7357648_SNP [dm3] 2L_7357648_SNP [dm6]	C	G	2.079e^-4	0.755	INTERGENIC
3L	6368077	3L_6368077_SNP [dm3] 3L_6374977_SNP [dm6]	C	T	2.080e^-4	0.755	INTERGENIC
3R	14489857	3R_14489857_DEL [dm3] 3R_18664135_DEL [dm6]	CCTTATTTATTTATTAAGCA...	C	2.085e^-4	0.755	UPSTREAM Cpsf73 INTRON Gos28	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	21321573	3R_21321573_INS [dm3] 3R_25495851_INS [dm6]	T	TGTATAAATT	2.087e^-4	0.755	UPSTREAM CG33494 DOWNSTREAM CR44948 INTERGENIC
X	2397510	X_2397510_SNP [dm3] X_2503477_SNP [dm6]	G	T	2.089e^-4	0.755	INTRON trol
3L	1338234	3L_1338234_SNP [dm3] 3L_1338234_SNP [dm6]	G	C	2.092e^-4	0.755	SYNONYMOUS_CODING l_3_02640	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	14903890	2L_14903890_DEL [dm3] 2L_14903890_DEL [dm6]	AA	A	2.096e^-4	0.755	INTERGENIC
3L	13371260	3L_13371260_SNP [dm3] 3L_13378160_SNP [dm6]	G	A	2.097e^-4	0.755	UPSTREAM SNCF INTRON CG14111	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	22130807	X_22130807_INS [dm3] X_22728971_INS [dm6]	C	CT	2.102e^-4	0.755	INTRON CR44997
2L	2264980	2L_2264980_SNP [dm3] 2L_2264980_SNP [dm6]	G	A	2.105e^-4	0.755	NON_SYNONYMOUS_CODING CG34049 DOWNSTREAM CG4270
3L	2479543	3L_2479543_SNP [dm3] 3L_2479543_SNP [dm6]	G	A	2.106e^-4	0.755	INTRON CG45186
2R	17104630	2R_17104630_SNP [dm3] 2R_21217125_SNP [dm6]	T	A	2.106e^-4	0.755	NON_SYNONYMOUS_CODING CG15661 DOWNSTREAM ASPP
2R	10791688	2R_10791688_SNP [dm3] 2R_14904183_SNP [dm6]	G	A	2.121e^-4	0.758	SYNONYMOUS_CODING CG10249 UPSTREAM CG10249	TF binding site mE1_TFBS_chinmo
3L	15868332	3L_15868332_SNP [dm3] 3L_15875232_SNP [dm6]	G	A	2.123e^-4	0.758	DOWNSTREAM CR44051 INTRON pHCl
2L	5878835	2L_5878835_DEL [dm3] 2L_5878835_DEL [dm6]	CGC	C	2.128e^-4	0.758	INTRON rau	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	16750980	2L_16750980_SNP [dm3] 2L_16750980_SNP [dm6]	C	T	2.134e^-4	0.758	UTR_3_PRIME CG17912	TF binding site mE1_TFBS_HSA
2L	1240063	2L_1240063_SNP [dm3] 2L_1240063_SNP [dm6]	G	A	2.134e^-4	0.758	UTR_5_PRIME CG5397
2L	5220447	2L_5220447_SNP [dm3] 2L_5220447_SNP [dm6]	T	C	2.151e^-4	0.763	SYNONYMOUS_CODING tkv	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	9092324	3L_9092324_SNP [dm3] 3L_9099224_SNP [dm6]	C	A	2.156e^-4	0.763	UTR_3_PRIME bol
2R	15675351	2R_15675351_INS [dm3] 2R_19787846_INS [dm6]	C	CT	2.161e^-4	0.764	EXON CR45231
3R	13045071	3R_13045071_SNP [dm3] 3R_17219349_SNP [dm6]	G	A	2.168e^-4	0.765	SYNONYMOUS_CODING CG31262
3R	15190180	3R_15190180_SNP [dm3] 3R_19364458_SNP [dm6]	C	G	2.190e^-4	0.766	INTERGENIC
3R	2324799	3R_2324799_SNP [dm3] 3R_6499077_SNP [dm6]	T	C	2.194e^-4	0.766	INTERGENIC
2L	11934789	2L_11934789_SNP [dm3] 2L_11934789_SNP [dm6]	A	G	2.196e^-4	0.766	SYNONYMOUS_CODING Or33a
2L	13556773	2L_13556773_SNP [dm3] 2L_13556773_SNP [dm6]	A	T	2.197e^-4	0.766	INTRON kuz
3L	2479933	3L_2479933_SNP [dm3] 3L_2479933_SNP [dm6]	A	G	2.198e^-4	0.766	INTRON CG45186	TF binding site BDTNP1_TFBS_twi
2L	13118662	2L_13118662_SNP [dm3] 2L_13118662_SNP [dm6]	G	T	2.201e^-4	0.766	UPSTREAM CG43050 DOWNSTREAM CR44198 INTERGENIC
3L	13266691	3L_13266691_SNP [dm3] 3L_13273591_SNP [dm6]	G	T	2.205e^-4	0.766	INTRON caps
3L	7012284	3L_7012284_SNP [dm3] 3L_7019184_SNP [dm6]	G	T	2.207e^-4	0.766	INTRON Mp
2R	17110148	2R_17110148_SNP [dm3] 2R_21222643_SNP [dm6]	G	A	2.218e^-4	0.767	INTRON ASPP	TF binding site mE1_TFBS_cad
2L	1029693	2L_1029693_SNP [dm3] 2L_1029693_SNP [dm6]	A	C	2.219e^-4	0.767	INTRON IA-2
2R	7710390	2R_7710390_SNP [dm3] 2R_11822885_SNP [dm6]	G	T	2.219e^-4	0.767	INTERGENIC
2L	12547129	2L_12547129_SNP [dm3] 2L_12547129_SNP [dm6]	G	A	2.227e^-4	0.767	UPSTREAM bun INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	18987322	2R_18987322_SNP [dm3] 2R_23099799_SNP [dm6]	A	G	2.229e^-4	0.767	DOWNSTREAM RpL37b INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	19298282	2R_19298282_SNP [dm3] 2R_23410759_SNP [dm6]	T	C	2.237e^-4	0.768	INTERGENIC
X	10431347	X_10431347_SNP [dm3] X_10537314_SNP [dm6]	T	A	2.240e^-4	0.768	INTRON spri	TF binding site mE1_TFBS_inv
X	22120589	X_22120589_SNP [dm3] X_22718753_SNP [dm6]	T	A	2.249e^-4	0.769	INTRON CR44997
2L	16238982	2L_16238982_SNP [dm3] 2L_16238982_SNP [dm6]	C	A	2.255e^-4	0.769	INTRON CG42817
X	22133352	X_22133352_SNP [dm3] X_22731516_SNP [dm6]	G	T	2.268e^-4	0.769	INTRON CR44997
X	22124348	X_22124348_SNP [dm3] X_22722512_SNP [dm6]	G	T	2.268e^-4	0.769	INTRON CR44997	transposable element FlyBase
3L	12413531	3L_12413531_SNP [dm3] 3L_12420431_SNP [dm6]	C	T	2.269e^-4	0.769	INTERGENIC
2R	16890458	2R_16890458_SNP [dm3] 2R_21002953_SNP [dm6]	G	A	2.271e^-4	0.769	SYNONYMOUS_CODING CG10543	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17550788	2L_17550788_SNP [dm3] 2L_17550788_SNP [dm6]	A	T	2.272e^-4	0.769	INTERGENIC
2L	9253255	2L_9253255_SNP [dm3] 2L_9253255_SNP [dm6]	A	G	2.278e^-4	0.769	UPSTREAM borr DOWNSTREAM lectin-30A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	14669690	3R_14669690_INS [dm3] 3R_18843968_INS [dm6]	T	TGG	2.279e^-4	0.769	INTRON CG18208
3R	10940261	3R_10940261_SNP [dm3] 3R_15114539_SNP [dm6]	T	A	2.284e^-4	0.769	INTRON CG42788
3L	7391364	3L_7391364_SNP [dm3] 3L_7398264_SNP [dm6]	G	A	2.291e^-4	0.769	UPSTREAM CG8562 DOWNSTREAM CG32379 INTERGENIC	TF binding site mE1_TFBS_cad
2R	14539792	2R_14539792_SNP [dm3] 2R_18652287_SNP [dm6]	A	G	2.295e^-4	0.769	INTRON SP2637	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	10040111	2R_10040111_SNP [dm3] 2R_14152606_SNP [dm6]	T	G	2.300e^-4	0.769	UTR_5_PRIME Rcd1 UPSTREAM pea INTRON Rcd1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	4488749	3L_4488749_SNP [dm3] 3L_4488749_SNP [dm6]	T	C	2.305e^-4	0.769	INTRON CG13722
2L	9285463	2L_9285463_SNP [dm3] 2L_9285463_SNP [dm6]	A	T	2.308e^-4	0.769	INTRON Ggamma30A
2R	13467311	2R_13467311_SNP [dm3] 2R_17579806_SNP [dm6]	C	T	2.321e^-4	0.769	SYNONYMOUS_CODING Dcr-2	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	12576084	2L_12576084_SNP [dm3] 2L_12576084_SNP [dm6]	C	T	2.322e^-4	0.769	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20222802	2L_20222802_SNP [dm3] 2L_20222802_SNP [dm6]	A	T	2.322e^-4	0.769	INTERGENIC	transposable element FlyBase
2L	16781180	2L_16781180_INS [dm3] 2L_16781180_INS [dm6]	C	CG	2.331e^-4	0.769	INTRON Mhc
2L	11934846	2L_11934846_SNP [dm3] 2L_11934846_SNP [dm6]	T	C	2.349e^-4	0.769	SYNONYMOUS_CODING Or33a
2R	19301635	2R_19301635_SNP [dm3] 2R_23414112_SNP [dm6]	C	T	2.350e^-4	0.769	INTRON CG9812
3R	14488808	3R_14488808_SNP [dm3] 3R_18663086_SNP [dm6]	A	G	2.351e^-4	0.769	SYNONYMOUS_CODING Cpsf73 UPSTREAM Gos28	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3L	4160829	3L_4160829_SNP [dm3] 3L_4160829_SNP [dm6]	T	A	2.352e^-4	0.769	UTR_5_PRIME nab DOWNSTREAM mas	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3L	3551153	3L_3551153_SNP [dm3] 3L_3551153_SNP [dm6]	A	C	2.360e^-4	0.769	INTRON Eip63E
X	22131619	X_22131619_SNP [dm3] X_22729783_SNP [dm6]	T	C	2.362e^-4	0.769	INTRON CR44997	transposable element FlyBase
2R	7683014	2R_7683014_SNP [dm3] 2R_11795509_SNP [dm6]	C	G	2.372e^-4	0.769	INTRON ths	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	5503317	3R_5503317_SNP [dm3] 3R_9677595_SNP [dm6]	T	A	2.373e^-4	0.769	NON_SYNONYMOUS_CODING CG8358 UPSTREAM CG16817	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3L	2479544	3L_2479544_SNP [dm3] 3L_2479544_SNP [dm6]	C	T	2.378e^-4	0.769	INTRON CG45186
2L	6804615	2L_6804615_SNP [dm3] 2L_6804615_SNP [dm6]	A	C	2.381e^-4	0.769	UTR_3_PRIME CG17375 DOWNSTREAM CG17375 & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	1677679	2L_1677679_SNP [dm3] 2L_1677679_SNP [dm6]	G	A	2.385e^-4	0.769	INTRON chinmo
2R	8875882	2R_8875882_SNP [dm3] 2R_12988377_SNP [dm6]	G	T	2.389e^-4	0.769	INTERGENIC
X	22123959	X_22123959_SNP [dm3] X_22722123_SNP [dm6]	C	T	2.394e^-4	0.769	INTRON CR44997
2R	10583639	2R_10583639_SNP [dm3] 2R_14696134_SNP [dm6]	C	T	2.394e^-4	0.769	INTRON mspo
3L	1612872	3L_1612872_SNP [dm3] 3L_1612872_SNP [dm6]	A	G	2.412e^-4	0.769	NON_SYNONYMOUS_CODING CG12105 INTRON CG33791 & 1 other	TF binding site mE1_TFBS_chinmo
3R	20605804	3R_20605804_SNP [dm3] 3R_24780082_SNP [dm6]	C	T	2.413e^-4	0.769	SYNONYMOUS_CODING CG42331	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	9453815	2R_9453815_DEL [dm3] 2R_13566310_DEL [dm6]	GCTATTTTTCAATCTATATT...	G	2.413e^-4	0.769	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	9135634	2L_9135634_SNP [dm3] 2L_9135634_SNP [dm6]	C	A	2.421e^-4	0.769	INTRON CG32982
3L	17673285	3L_17673285_SNP [dm3] 3L_17680185_SNP [dm6]	T	A	2.422e^-4	0.769	INTRON CG34251
3L	18602417	3L_18602417_SNP [dm3] 3L_18609317_SNP [dm6]	T	A	2.422e^-4	0.769	UPSTREAM CG32201 INTRON CG4174 & 2 others
3L	9357333	3L_9357333_SNP [dm3] 3L_9364233_SNP [dm6]	C	A	2.425e^-4	0.769	UPSTREAM CG4447 INTRON Klp67A	TF binding site mE1_TFBS_HSA
2L	11518633	2L_11518633_SNP [dm3] 2L_11518633_SNP [dm6]	T	A	2.427e^-4	0.769	NON_SYNONYMOUS_CODING CG4970	TF binding site mE1_TFBS_sens
2R	8414344	2R_8414344_DEL [dm3] 2R_12526839_DEL [dm6]	ATCGAAGCGT	A	2.430e^-4	0.769	INTERGENIC	transposable element FlyBase
2R	3517555	2R_3517555_SNP [dm3] 2R_7630050_SNP [dm6]	T	C	2.434e^-4	0.769	INTRON CG43340	TF binding site mE1_TFBS_cad
3L	11478954	3L_11478954_SNP [dm3] 3L_11485854_SNP [dm6]	A	G	2.437e^-4	0.769	INTERGENIC
3L	3406503	3L_3406503_SNP [dm3] 3L_3406503_SNP [dm6]	A	T	2.440e^-4	0.769	INTRON sty
2L	10643576	2L_10643576_SNP [dm3] 2L_10643576_SNP [dm6]	A	T	2.442e^-4	0.769	UPSTREAM CG18284 DOWNSTREAM CG31872 INTERGENIC
3L	14477835	3L_14477835_SNP [dm3] 3L_14484735_SNP [dm6]	A	T	2.447e^-4	0.769	INTRON bbg
2R	16890288	2R_16890288_SNP [dm3] 2R_21002783_SNP [dm6]	A	G	2.452e^-4	0.769	NON_SYNONYMOUS_CODING CG10543	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1548258	2L_1548258_SNP [dm3] 2L_1548258_SNP [dm6]	G	A	2.454e^-4	0.769	INTERGENIC
X	13006669	X_13006669_SNP [dm3] X_13112636_SNP [dm6]	T	C	2.466e^-4	0.769	UPSTREAM CG43313 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	22132050	X_22132050_SNP [dm3] X_22730214_SNP [dm6]	T	C	2.468e^-4	0.769	INTRON CR44997	transposable element FlyBase
2R	19296677	2R_19296677_SNP [dm3] 2R_23409154_SNP [dm6]	A	G	2.473e^-4	0.769	INTERGENIC
X	22144037	X_22144037_SNP [dm3] X_22742201_SNP [dm6]	C	A	2.474e^-4	0.769	INTRON CR44997	transposable element FlyBase
3R	24305365	3R_24305365_SNP [dm3] 3R_28479643_SNP [dm6]	G	C	2.477e^-4	0.769	INTERGENIC
3L	7058208	3L_7058208_SNP [dm3] 3L_7065108_SNP [dm6]	G	C	2.477e^-4	0.769	INTRON CG8641
X	22144031	X_22144031_SNP [dm3] X_22742195_SNP [dm6]	C	A	2.479e^-4	0.769	INTRON CR44997	transposable element FlyBase
X	15169026	X_15169026_SNP [dm3] X_15274993_SNP [dm6]	A	T	2.480e^-4	0.769	INTERGENIC
X	5989421	X_5989421_SNP [dm3] X_6095388_SNP [dm6]	T	C	2.482e^-4	0.769	INTRON Nep1
2L	14908031	2L_14908031_SNP [dm3] 2L_14908031_SNP [dm6]	T	G	2.483e^-4	0.769	UTR_3_PRIME CG42313
2L	2465309	2L_2465309_SNP [dm3] 2L_2465309_SNP [dm6]	A	T	2.497e^-4	0.77	INTERGENIC	enhancer FlyBase
2L	3329237	2L_3329237_SNP [dm3] 2L_3329237_SNP [dm6]	T	C	2.500e^-4	0.77	SYNONYMOUS_CODING CG33282
3L	7401727	3L_7401727_SNP [dm3] 3L_7408627_SNP [dm6]	A	T	2.509e^-4	0.77	EXON CR44525
3R	8105872	3R_8105872_SNP [dm3] 3R_12280150_SNP [dm6]	G	A	2.510e^-4	0.77	UPSTREAM svp INTRON svp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	22136220	X_22136220_SNP [dm3] X_22734384_SNP [dm6]	T	C	2.518e^-4	0.77	INTRON CR44997
3L	834070	3L_834070_SNP [dm3] 3L_834070_SNP [dm6]	T	C	2.523e^-4	0.77	UPSTREAM CG42553 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	2689901	2L_2689901_SNP [dm3] 2L_2689901_SNP [dm6]	G	A	2.525e^-4	0.77	INTRON CG31690
3L	7983924	3L_7983924_SNP [dm3] 3L_7990824_SNP [dm6]	G	C	2.525e^-4	0.77	INTRON nmo
3R	16951738	3R_16951738_SNP [dm3] 3R_21126016_SNP [dm6]	A	T	2.527e^-4	0.77	INTRON slmb	TF binding site BDTNP1_TFBS_dl
2R	11403245	2R_11403245_DEL [dm3] 2R_15515740_DEL [dm6]	CC	C	2.532e^-4	0.77	DOWNSTREAM Khc-73 & 1 other INTERGENIC
3L	14596119	3L_14596119_SNP [dm3] 3L_14603019_SNP [dm6]	A	G	2.532e^-4	0.77	INTERGENIC	TF binding site mE1_TFBS_Kr
X	22130013	X_22130013_SNP [dm3] X_22728177_SNP [dm6]	G	A	2.543e^-4	0.77	INTRON CR44997	transposable element FlyBase
2R	8418593	2R_8418593_SNP [dm3] 2R_12531088_SNP [dm6]	G	A	2.547e^-4	0.77	INTRON fra	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	755691	2L_755691_SNP [dm3] 2L_755691_SNP [dm6]	C	A	2.550e^-4	0.77	NON_SYNONYMOUS_CODING GABA-B-R3 INTRON GABA-B-R3
2L	11319615	2L_11319615_SNP [dm3] 2L_11319615_SNP [dm6]	T	C	2.552e^-4	0.77	DOWNSTREAM CR44583 INTERGENIC
3L	4485154	3L_4485154_DEL [dm3] 3L_4485154_DEL [dm6]	AC	A	2.557e^-4	0.77	DOWNSTREAM CG13722 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
2L	4046185	2L_4046185_SNP [dm3] 2L_4046185_SNP [dm6]	A	G	2.559e^-4	0.77	INTRON ed	TF binding site mE1_TFBS_HSA
2R	11412856	2R_11412856_SNP [dm3] 2R_15525351_SNP [dm6]	G	A	2.568e^-4	0.772	INTRON Khc-73
2L	14100089	2L_14100089_SNP [dm3] 2L_14100089_SNP [dm6]	T	C	2.573e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8875906	2R_8875906_SNP [dm3] 2R_12988401_SNP [dm6]	A	G	2.575e^-4	0.772	INTERGENIC
X	2264538	X_2264538_SNP [dm3] X_2370505_SNP [dm6]	G	A	2.586e^-4	0.773	NON_SYNONYMOUS_CODING PsGEF UTR_3_PRIME PsGEF	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1551606	3L_1551606_SNP [dm3] 3L_1551606_SNP [dm6]	C	T	2.587e^-4	0.773	SYNONYMOUS_CODING Cct1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14911899	2L_14911899_SNP [dm3] 2L_14911899_SNP [dm6]	T	A	2.606e^-4	0.776	INTRON CG42313
X	2264574	X_2264574_SNP [dm3] X_2370541_SNP [dm6]	G	A	2.612e^-4	0.776	NON_SYNONYMOUS_CODING PsGEF UTR_3_PRIME PsGEF	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18051467	2R_18051467_SNP [dm3] 2R_22163962_SNP [dm6]	G	A	2.617e^-4	0.776	SYNONYMOUS_CODING CG34206 INTRON a
X	5989284	X_5989284_SNP [dm3] X_6095251_SNP [dm6]	G	C	2.624e^-4	0.776	INTRON Nep1
2L	4046197	2L_4046197_SNP [dm3] 2L_4046197_SNP [dm6]	G	A	2.627e^-4	0.776	INTRON ed	TF binding site mE1_TFBS_HSA
2R	10737872	2R_10737872_SNP [dm3] 2R_14850367_SNP [dm6]	A	T	2.635e^-4	0.776	INTRON SMC2
2R	16890629	2R_16890629_SNP [dm3] 2R_21003124_SNP [dm6]	G	A	2.636e^-4	0.776	SYNONYMOUS_CODING CG10543	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15829696	3R_15829696_SNP [dm3] 3R_20003974_SNP [dm6]	G	A	2.640e^-4	0.776	INTRON Hs6st	TF binding site mE1_TFBS_zfh1
3L	5071322	3L_5071322_SNP [dm3] 3L_5071322_SNP [dm6]	C	G	2.643e^-4	0.776	INTRON Con
2L	11930045	2L_11930045_SNP [dm3] 2L_11930045_SNP [dm6]	C	T	2.648e^-4	0.776	INTERGENIC
3R	21321410	3R_21321410_DEL [dm3] 3R_25495688_DEL [dm6]	AAGAGATTAA	A	2.648e^-4	0.776	UPSTREAM CG33494 DOWNSTREAM CR44948 INTERGENIC	transposable element FlyBase
3R	21095783	3R_21095783_SNP [dm3] 3R_25270061_SNP [dm6]	T	C	2.649e^-4	0.776	UPSTREAM CG11889 & 2 others DOWNSTREAM CR13656 INTERGENIC
2R	14362317	2R_14362317_SNP [dm3] 2R_18474812_SNP [dm6]	T	G	2.653e^-4	0.776	INTRON CG30116
2L	16921207	2L_16921207_SNP [dm3] 2L_16921207_SNP [dm6]	C	T	2.663e^-4	0.777	INTERGENIC
X	22131503	X_22131503_DEL [dm3] X_22729667_DEL [dm6]	ATGCTACA	A	2.665e^-4	0.777	INTRON CR44997	transposable element FlyBase
2L	9528774	2L_9528774_SNP [dm3] 2L_9528774_SNP [dm6]	C	G	2.672e^-4	0.777	NON_SYNONYMOUS_CODING CG31883 INTRON Oatp30B
2R	11412488	2R_11412488_SNP [dm3] 2R_15524983_SNP [dm6]	G	A	2.690e^-4	0.777	INTRON Khc-73
2R	14539830	2R_14539830_DEL [dm3] 2R_18652325_DEL [dm6]	ACCTCGG	A	2.693e^-4	0.777	INTRON SP2637	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	1920759	2L_1920759_SNP [dm3] 2L_1920759_SNP [dm6]	C	T	2.696e^-4	0.777	INTRON CG7337
2L	7273777	2L_7273777_SNP [dm3] 2L_7273777_SNP [dm6]	T	G	2.697e^-4	0.777	INTRON Wnt4	TF binding site mE1_TFBS_HSA
3L	265632	3L_265632_SNP [dm3] 3L_265632_SNP [dm6]	G	T	2.700e^-4	0.777	NON_SYNONYMOUS_CODING CG34263 UTR_3_PRIME mRpL17 DOWNSTREAM mRpL17	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	22135410	X_22135410_SNP [dm3] X_22733574_SNP [dm6]	A	G	2.701e^-4	0.777	INTRON CR44997
2L	16303088	2L_16303088_SNP [dm3] 2L_16303088_SNP [dm6]	T	C	2.704e^-4	0.777	UPSTREAM c_2_M & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	10336598	2R_10336598_SNP [dm3] 2R_14449093_SNP [dm6]	T	A	2.705e^-4	0.777	INTRON Oaz	TF binding site mE1_TFBS_Trl
2L	1264446	2L_1264446_SNP [dm3] 2L_1264446_SNP [dm6]	T	C	2.723e^-4	0.777	INTRON robo3	TF binding site BDTNP1_TFBS_dl
3L	13464370	3L_13464370_SNP [dm3] 3L_13471270_SNP [dm6]	A	T	2.724e^-4	0.777	INTRON CG10089
X	5230024	X_5230024_SNP [dm3] X_5335991_SNP [dm6]	C	T	2.726e^-4	0.777	INTERGENIC
2L	6329837	2L_6329837_SNP [dm3] 2L_6329837_SNP [dm6]	G	A	2.727e^-4	0.777	INTRON PDZ-GEF	TF binding site mE1_TFBS_cad
3R	13045107	3R_13045107_SNP [dm3] 3R_17219385_SNP [dm6]	G	T	2.729e^-4	0.777	SYNONYMOUS_CODING CG31262
X	22134949	X_22134949_SNP [dm3] X_22733113_SNP [dm6]	T	C	2.736e^-4	0.777	INTRON CR44997
X	18025427	X_18025427_INS [dm3] X_18131394_INS [dm6]	A	AT	2.740e^-4	0.777	UTR_3_PRIME ari-1 DOWNSTREAM ari-1	transposable element FlyBase
3L	18592821	3L_18592821_SNP [dm3] 3L_18599721_SNP [dm6]	C	T	2.741e^-4	0.777	DOWNSTREAM CG13380 & 1 other INTERGENIC
3R	5199046	3R_5199046_SNP [dm3] 3R_9373324_SNP [dm6]	A	T	2.741e^-4	0.777	SPLICE_SITE_REGION FER INTRON FER
3L	2747100	3L_2747100_SNP [dm3] 3L_2747100_SNP [dm6]	G	T	2.744e^-4	0.777	INTRON Mrtf
2R	11400687	2R_11400687_SNP [dm3] 2R_15513182_SNP [dm6]	A	G	2.758e^-4	0.779	UPSTREAM GalNAc-T1 INTRON GalNAc-T1
X	22134138	X_22134138_SNP [dm3] X_22732302_SNP [dm6]	G	T	2.772e^-4	0.779	INTRON CR44997	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	8417564	2R_8417564_SNP [dm3] 2R_12530059_SNP [dm6]	A	C	2.775e^-4	0.779	INTRON fra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	778029	3L_778029_SNP [dm3] 3L_778029_SNP [dm6]	A	T	2.776e^-4	0.779	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	21462836	X_21462836_SNP [dm3] X_21591809_SNP [dm6]	G	A	2.778e^-4	0.779	INTERGENIC
3L	777025	3L_777025_SNP [dm3] 3L_777025_SNP [dm6]	A	G	2.779e^-4	0.779	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13045110	3R_13045110_SNP [dm3] 3R_17219388_SNP [dm6]	C	A	2.781e^-4	0.779	SYNONYMOUS_CODING CG31262
X	14813868	X_14813868_SNP [dm3] X_14919835_SNP [dm6]	A	G	2.782e^-4	0.779	SYNONYMOUS_CODING CG9503 INTRON Flo2	TF binding site mE1_TFBS_sens
2L	13325872	2L_13325872_SNP [dm3] 2L_13325872_SNP [dm6]	A	G	2.795e^-4	0.78	INTRON CG43778
3L	2551680	3L_2551680_SNP [dm3] 3L_2551680_SNP [dm6]	A	T	2.802e^-4	0.78	INTRON Spn
2L	9134470	2L_9134470_SNP [dm3] 2L_9134470_SNP [dm6]	A	G	2.809e^-4	0.78	INTRON CG32982
2L	3758494	2L_3758494_SNP [dm3] 2L_3758494_SNP [dm6]	G	T	2.813e^-4	0.78	INTRON CG43707
X	22136439	X_22136439_SNP [dm3] X_22734603_SNP [dm6]	G	T	2.813e^-4	0.78	INTRON CR44997
2L	14911908	2L_14911908_SNP [dm3] 2L_14911908_SNP [dm6]	C	T	2.820e^-4	0.78	INTRON CG42313
2L	13118641	2L_13118641_SNP [dm3] 2L_13118641_SNP [dm6]	A	G	2.821e^-4	0.78	UPSTREAM CG43050 DOWNSTREAM CR44198 INTERGENIC
2L	14998075	2L_14998075_SNP [dm3] 2L_14998075_SNP [dm6]	C	T	2.823e^-4	0.78	UPSTREAM mol INTERGENIC
3R	14448626	3R_14448626_SNP [dm3] 3R_18622904_SNP [dm6]	A	G	2.828e^-4	0.78	INTRON qin	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	17579490	X_17579490_SNP [dm3] X_17685457_SNP [dm6]	A	C	2.834e^-4	0.78	INTRON chas
2L	9253529	2L_9253529_SNP [dm3] 2L_9253529_SNP [dm6]	C	A	2.836e^-4	0.78	UPSTREAM borr DOWNSTREAM lectin-30A INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19487941	2R_19487941_SNP [dm3] 2R_23600418_SNP [dm6]	T	A	2.837e^-4	0.78	UPSTREAM CG42560 DOWNSTREAM apt & 2 others INTRON CG42559 & 1 other
X	5512535	X_5512535_SNP [dm3] X_5618502_SNP [dm6]	G	C	2.841e^-4	0.78	DOWNSTREAM Mlc-c INTRON RhoGAP5A	TF binding site mE1_TFBS_chinmo
2R	11391523	2R_11391523_SNP [dm3] 2R_15504018_SNP [dm6]	G	T	2.846e^-4	0.78	UPSTREAM Ir52c DOWNSTREAM Ir52b INTERGENIC
3R	8112425	3R_8112425_SNP [dm3] 3R_12286703_SNP [dm6]	T	C	2.847e^-4	0.78	INTRON svp
2L	13535295	2L_13535295_SNP [dm3] 2L_13535295_SNP [dm6]	A	G	2.861e^-4	0.782	UTR_3_PRIME CG15638 INTRON B4
3R	25074555	3R_25074555_SNP [dm3] 3R_29248833_SNP [dm6]	C	T	2.864e^-4	0.782	UTR_5_PRIME SP1029 INTRON SP1029
X	7126346	X_7126346_SNP [dm3] X_7232313_SNP [dm6]	T	A	2.878e^-4	0.782	INTRON CR44357 & 1 other	TF binding site mE1_TFBS_chinmo
3L	16719710	3L_16719710_SNP [dm3] 3L_16726610_SNP [dm6]	C	G	2.881e^-4	0.782	SYNONYMOUS_CODING PGRP-SB2 UPSTREAM CG13026 DOWNSTREAM PGRP-SB1	TF binding site mE1_TFBS_inv
2L	11148822	2L_11148822_SNP [dm3] 2L_11148822_SNP [dm6]	A	G	2.885e^-4	0.782	SYNONYMOUS_CODING Gyc32E	TF binding site BDTNP1_TFBS_prd
2L	7359354	2L_7359354_SNP [dm3] 2L_7359354_SNP [dm6]	G	A	2.885e^-4	0.782	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7715384	2R_7715384_SNP [dm3] 2R_11827879_SNP [dm6]	C	T	2.896e^-4	0.782	SYNONYMOUS_CODING Sobp DOWNSTREAM CG13192	TF binding site mE1_TFBS_cad
X	21448187	X_21448187_DEL [dm3] X_21577160_DEL [dm6]	AAACA	TTT	2.898e^-4	0.782	INTERGENIC
3L	7390694	3L_7390694_SNP [dm3] 3L_7397594_SNP [dm6]	G	A	2.902e^-4	0.782	UPSTREAM CG8562 INTRON CG32379
X	22134961	X_22134961_SNP [dm3] X_22733125_SNP [dm6]	A	G	2.905e^-4	0.782	INTRON CR44997
3L	12414317	3L_12414317_INS [dm3] 3L_12421217_INS [dm6]	A	AA	2.907e^-4	0.782	INTERGENIC
3L	2552113	3L_2552113_SNP [dm3] 3L_2552113_SNP [dm6]	T	C	2.911e^-4	0.782	INTRON Spn
3R	27035164	3R_27035164_DEL [dm3] 3R_31209442_DEL [dm6]	AAA	A	2.913e^-4	0.782	INTRON chp
3R	14489888	3R_14489888_SNP [dm3] 3R_18664166_SNP [dm6]	C	T	2.917e^-4	0.782	UPSTREAM Cpsf73 INTRON Gos28	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	16711423	2R_16711423_SNP [dm3] 2R_20823918_SNP [dm6]	A	G	2.927e^-4	0.782	SYNONYMOUS_CODING insc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	10608696	2R_10608696_SNP [dm3] 2R_14721191_SNP [dm6]	G	A	2.927e^-4	0.782	INTERGENIC
2R	9509724	2R_9509724_SNP [dm3] 2R_13622219_SNP [dm6]	T	C	2.932e^-4	0.782	UPSTREAM fas INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2R	11410350	2R_11410350_SNP [dm3] 2R_15522845_SNP [dm6]	T	C	2.934e^-4	0.782	INTRON Khc-73	TF binding site mE1_TFBS_cad
2R	11001584	2R_11001584_SNP [dm3] 2R_15114079_SNP [dm6]	A	T	2.937e^-4	0.782	INTERGENIC	TF binding site mE1_TFBS_bab1
X	22130115	X_22130115_SNP [dm3] X_22728279_SNP [dm6]	C	G	2.938e^-4	0.782	INTRON CR44997	transposable element FlyBase
2L	12924417	2L_12924417_SNP [dm3] 2L_12924417_SNP [dm6]	T	C	2.944e^-4	0.782	SYNONYMOUS_CODING ACXA UTR_3_PRIME ACXA
3L	11863383	3L_11863383_SNP [dm3] 3L_11870283_SNP [dm6]	C	T	2.948e^-4	0.782	DOWNSTREAM CG5906 INTRON CG44837	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	14906546	2L_14906546_SNP [dm3] 2L_14906546_SNP [dm6]	C	T	2.952e^-4	0.782	DOWNSTREAM CG42313 INTERGENIC
3R	23935393	3R_23935393_SNP [dm3] 3R_28109671_SNP [dm6]	A	C	2.958e^-4	0.782	INTERGENIC
3L	8606638	3L_8606638_SNP [dm3] 3L_8613538_SNP [dm6]	T	A	2.962e^-4	0.782	INTRON CG6282
3L	12959645	3L_12959645_DEL [dm3] 3L_12966545_DEL [dm6]	TAC	T	2.968e^-4	0.782	UPSTREAM Or69a INTRON Or69a
X	7861331	X_7861331_INS [dm3] X_7967298_INS [dm6]	A	AA	2.969e^-4	0.782	INTRON sn & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
3L	12911055	3L_12911055_SNP [dm3] 3L_12917955_SNP [dm6]	T	C	2.975e^-4	0.782	INTERGENIC
3L	2480321	3L_2480321_SNP [dm3] 3L_2480321_SNP [dm6]	G	A	2.978e^-4	0.782	INTRON CG45186	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16224294	2L_16224294_SNP [dm3] 2L_16224294_SNP [dm6]	A	T	3.000e^-4	0.782	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	14909632	2L_14909632_SNP [dm3] 2L_14909632_SNP [dm6]	C	G	3.003e^-4	0.782	INTRON CG42313
3R	14489896	3R_14489896_SNP [dm3] 3R_18664174_SNP [dm6]	T	A	3.004e^-4	0.782	UPSTREAM Cpsf73 INTRON Gos28	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	10481709	X_10481709_SNP [dm3] X_10587676_SNP [dm6]	C	T	3.012e^-4	0.782	INTERGENIC
3R	7963558	3R_7963558_SNP [dm3] 3R_12137836_SNP [dm6]	T	G	3.014e^-4	0.782	DOWNSTREAM dpr15 INTERGENIC
X	22123698	X_22123698_SNP [dm3] X_22721862_SNP [dm6]	T	C	3.014e^-4	0.782	INTRON CR44997
3L	7390631	3L_7390631_SNP [dm3] 3L_7397531_SNP [dm6]	G	A	3.016e^-4	0.782	UPSTREAM CG8562 INTRON CG32379
3R	3787739	3R_3787739_SNP [dm3] 3R_7962017_SNP [dm6]	C	A	3.020e^-4	0.782	INTRON dsx
3L	762577	3L_762577_SNP [dm3] 3L_762577_SNP [dm6]	G	C	3.024e^-4	0.782	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	11518619	2L_11518619_SNP [dm3] 2L_11518619_SNP [dm6]	G	C	3.026e^-4	0.782	NON_SYNONYMOUS_CODING CG4970	TF binding site mE1_TFBS_sens
2L	5345672	2L_5345672_DEL [dm3] 2L_5345672_DEL [dm6]	TAGTA	T	3.041e^-4	0.782	UPSTREAM nompC INTERGENIC
2R	15675326	2R_15675326_SNP [dm3] 2R_19787821_SNP [dm6]	A	G	3.047e^-4	0.782	EXON CR45231
3L	9332296	3L_9332296_SNP [dm3] 3L_9339196_SNP [dm6]	T	C	3.048e^-4	0.782	DOWNSTREAM PGRP-LA INTRON PGRP-LC
2R	11407722	2R_11407722_SNP [dm3] 2R_15520217_SNP [dm6]	C	T	3.049e^-4	0.782	NON_SYNONYMOUS_CODING Khc-73
3R	24304785	3R_24304785_SNP [dm3] 3R_28479063_SNP [dm6]	G	A	3.052e^-4	0.782	INTERGENIC
2L	4045405	2L_4045405_SNP [dm3] 2L_4045405_SNP [dm6]	G	A	3.053e^-4	0.782	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7357636	2L_7357636_SNP [dm3] 2L_7357636_SNP [dm6]	A	C	3.063e^-4	0.782	INTERGENIC
3R	23822623	3R_23822623_SNP [dm3] 3R_27996901_SNP [dm6]	A	C	3.066e^-4	0.782	INTERGENIC
3L	7390973	3L_7390973_SNP [dm3] 3L_7397873_SNP [dm6]	T	C	3.069e^-4	0.782	SYNONYMOUS_CODING CG32379 UPSTREAM CG8562	TF binding site mE1_TFBS_cad
X	22145830	X_22145830_SNP [dm3] X_22743994_SNP [dm6]	A	C	3.082e^-4	0.782	INTRON CR44997
3L	10630897	3L_10630897_SNP [dm3] 3L_10637797_SNP [dm6]	C	A	3.090e^-4	0.782	UTR_5_PRIME E_z_ UPSTREAM CG8009	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24118529	3R_24118529_SNP [dm3] 3R_28292807_SNP [dm6]	C	T	3.096e^-4	0.782	UTR_5_PRIME Mst98Cb DOWNSTREAM Mst98Ca	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	21739611	3L_21739611_SNP [dm3] 3L_21746511_SNP [dm6]	A	G	3.100e^-4	0.782	UTR_3_PRIME Syn1
2L	13334714	2L_13334714_SNP [dm3] 2L_13334714_SNP [dm6]	C	A	3.103e^-4	0.782	INTERGENIC
3R	13906118	3R_13906118_SNP [dm3] 3R_18080396_SNP [dm6]	C	T	3.110e^-4	0.782	UPSTREAM CG14317 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23335105	3R_23335105_SNP [dm3] 3R_27509383_SNP [dm6]	G	C	3.112e^-4	0.782	INTERGENIC
3R	18289856	3R_18289856_SNP [dm3] 3R_22464134_SNP [dm6]	T	G	3.113e^-4	0.782	UTR_3_PRIME AP-2mu UPSTREAM CG7054 INTRON AP-2mu	TF binding site mE1_TFBS_cad
2L	14908595	2L_14908595_SNP [dm3] 2L_14908595_SNP [dm6]	G	A	3.116e^-4	0.782	SYNONYMOUS_CODING CG42313	TF binding site mE1_TFBS_chinmo
2L	13556855	2L_13556855_SNP [dm3] 2L_13556855_SNP [dm6]	T	C	3.132e^-4	0.782	INTRON kuz
3R	13061220	3R_13061220_SNP [dm3] 3R_17235498_SNP [dm6]	G	A	3.137e^-4	0.782	INTRON beat-IIb
3R	6362772	3R_6362772_SNP [dm3] 3R_10537050_SNP [dm6]	C	G	3.144e^-4	0.782	INTRON hth	TF binding site BDTNP1_TFBS_dl
3R	2623663	3R_2623663_SNP [dm3] 3R_6797941_SNP [dm6]	G	T	3.148e^-4	0.782	INTRON Dfd	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc
2R	14539824	2R_14539824_SNP [dm3] 2R_18652319_SNP [dm6]	T	A	3.152e^-4	0.782	INTRON SP2637	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	12102044	2L_12102044_SNP [dm3] 2L_12102044_SNP [dm6]	C	T	3.174e^-4	0.782	SYNONYMOUS_CODING Patsas	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	13619016	X_13619016_SNP [dm3] X_13724983_SNP [dm6]	G	C	3.177e^-4	0.782	NON_SYNONYMOUS_CODING mus101	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	2479864	3L_2479864_SNP [dm3] 3L_2479864_SNP [dm6]	G	A	3.189e^-4	0.782	INTRON CG45186	TF binding site BDTNP1_TFBS_twi
3R	19400052	3R_19400052_SNP [dm3] 3R_23574330_SNP [dm6]	C	T	3.189e^-4	0.782	SYNONYMOUS_CODING beat-IV	TF binding site mE1_TFBS_chinmo
X	21498412	X_21498412_SNP [dm3] X_21627385_SNP [dm6]	A	C	3.197e^-4	0.782	INTRON DIP1	transposable element FlyBase
2R	18485620	2R_18485620_SNP [dm3] 2R_22598115_SNP [dm6]	T	A	3.200e^-4	0.782	UTR_5_PRIME CG4269 UPSTREAM CR45328	TF binding site mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA
3L	10892119	3L_10892119_SNP [dm3] 3L_10899019_SNP [dm6]	T	G	3.204e^-4	0.782	UTR_5_PRIME Aps UPSTREAM Aps	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	15257134	X_15257134_SNP [dm3] X_15363101_SNP [dm6]	T	C	3.205e^-4	0.782	INTRON acj6
3L	12428280	3L_12428280_SNP [dm3] 3L_12435180_SNP [dm6]	C	T	3.213e^-4	0.782	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z
2L	13556442	2L_13556442_DEL [dm3] 2L_13556442_DEL [dm6]	TT	T	3.217e^-4	0.782	INTRON kuz
2R	8418692	2R_8418692_SNP [dm3] 2R_12531187_SNP [dm6]	T	G	3.224e^-4	0.782	INTRON fra	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	9509726	2R_9509726_SNP [dm3] 2R_13622221_SNP [dm6]	T	A	3.236e^-4	0.782	UPSTREAM fas INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3R	26594208	3R_26594208_SNP [dm3] 3R_30768486_SNP [dm6]	G	C	3.238e^-4	0.782	INTRON zfh1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	9673845	2L_9673845_SNP [dm3] 2L_9673845_SNP [dm6]	C	T	3.240e^-4	0.782	INTERGENIC
2R	19172586	2R_19172586_SNP [dm3] 2R_23285063_SNP [dm6]	A	G	3.247e^-4	0.782	UTR_3_PRIME CG13541 UPSTREAM CG3124	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13536546	2R_13536546_SNP [dm3] 2R_17649041_SNP [dm6]	G	T	3.250e^-4	0.782	INTRON CCHa1-R	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5230155	X_5230155_INS [dm3] X_5336122_INS [dm6]	T	TAT	3.252e^-4	0.782	INTERGENIC
3R	10910295	3R_10910295_SNP [dm3] 3R_15084573_SNP [dm6]	C	A	3.259e^-4	0.782	INTRON CG6966
2R	11413827	2R_11413827_SNP [dm3] 2R_15526322_SNP [dm6]	G	A	3.268e^-4	0.782	SYNONYMOUS_CODING Khc-73	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6725002	3L_6725002_SNP [dm3] 3L_6731902_SNP [dm6]	G	A	3.271e^-4	0.782	SYNONYMOUS_CODING dikar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7012271	3L_7012271_SNP [dm3] 3L_7019171_SNP [dm6]	G	C	3.273e^-4	0.782	INTRON Mp
3R	13729791	3R_13729791_SNP [dm3] 3R_17904069_SNP [dm6]	A	G	3.279e^-4	0.782	INTRON Rim
X	22131747	X_22131747_SNP [dm3] X_22729911_SNP [dm6]	A	G	3.281e^-4	0.782	INTRON CR44997	transposable element FlyBase
3R	21118020	3R_21118020_SNP [dm3] 3R_25292298_SNP [dm6]	C	A	3.282e^-4	0.782	SYNONYMOUS_CODING CG31098 DOWNSTREAM CG11893	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7250237	2L_7250237_SNP [dm3] 2L_7250237_SNP [dm6]	G	A	3.290e^-4	0.782	UPSTREAM Ndae1 DOWNSTREAM CG13786 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14477842	3L_14477842_DEL [dm3] 3L_14484742_DEL [dm6]	TAAG	T	3.292e^-4	0.782	INTRON bbg
X	7329536	X_7329536_SNP [dm3] X_7435503_SNP [dm6]	T	C	3.292e^-4	0.782	INTERGENIC
X	20956293	X_20956293_SNP [dm3] X_21085266_SNP [dm6]	T	C	3.295e^-4	0.782	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	25707523	3R_25707523_SNP [dm3] 3R_29881801_SNP [dm6]	G	A	3.297e^-4	0.782	INTRON CG31038
3R	2364835	3R_2364835_SNP [dm3] 3R_6539113_SNP [dm6]	G	A	3.309e^-4	0.782	INTRON dpr11
X	9290305	X_9290305_SNP [dm3] X_9396272_SNP [dm6]	A	G	3.310e^-4	0.782	INTRON mgl
2R	8417633	2R_8417633_SNP [dm3] 2R_12530128_SNP [dm6]	G	T	3.314e^-4	0.782	INTRON fra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16711885	2R_16711885_SNP [dm3] 2R_20824380_SNP [dm6]	T	C	3.316e^-4	0.782	SYNONYMOUS_CODING insc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13556769	2L_13556769_SNP [dm3] 2L_13556769_SNP [dm6]	C	T	3.317e^-4	0.782	INTRON kuz
2L	2721456	2L_2721456_SNP [dm3] 2L_2721456_SNP [dm6]	C	T	3.318e^-4	0.782	INTERGENIC
3L	3488838	3L_3488838_SNP [dm3] 3L_3488838_SNP [dm6]	G	T	3.332e^-4	0.782	INTRON CG42324
3R	13906063	3R_13906063_SNP [dm3] 3R_18080341_SNP [dm6]	T	C	3.333e^-4	0.782	UPSTREAM CG14317 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9453906	2R_9453906_SNP [dm3] 2R_13566401_SNP [dm6]	C	G	3.334e^-4	0.782	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	22135899	X_22135899_SNP [dm3] X_22734063_SNP [dm6]	G	A	3.335e^-4	0.782	INTRON CR44997
X	5512883	X_5512883_SNP [dm3] X_5618850_SNP [dm6]	G	A	3.337e^-4	0.782	UPSTREAM RhoGAP5A DOWNSTREAM Mlc-c INTERGENIC
2R	16665497	2R_16665497_DEL [dm3] 2R_20777992_DEL [dm6]	TT	T	3.338e^-4	0.782	UPSTREAM CG43710 DOWNSTREAM CG43711 INTERGENIC
2L	8965841	2L_8965841_SNP [dm3] 2L_8965841_SNP [dm6]	A	G	3.339e^-4	0.782	NON_SYNONYMOUS_CODING CG32984
2L	10041223	2L_10041223_SNP [dm3] 2L_10041223_SNP [dm6]	A	G	3.342e^-4	0.782	INTERGENIC
2L	2843989	2L_2843989_SNP [dm3] 2L_2843989_SNP [dm6]	T	C	3.347e^-4	0.782	SYNONYMOUS_CODING CG18558 DOWNSTREAM CG18557	TF binding site mE1_TFBS_cad
2L	11770706	2L_11770706_SNP [dm3] 2L_11770706_SNP [dm6]	A	G	3.349e^-4	0.782	INTERGENIC
2R	19899780	2R_19899780_SNP [dm3] 2R_24012257_SNP [dm6]	G	T	3.351e^-4	0.782	UPSTREAM Unc-89 INTRON Unc-89	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2633875	3L_2633875_SNP [dm3] 3L_2633875_SNP [dm6]	G	A	3.353e^-4	0.782	INTRON MEP-1 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	11413872	2R_11413872_SNP [dm3] 2R_15526367_SNP [dm6]	G	T	3.354e^-4	0.782	SYNONYMOUS_CODING Khc-73	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13820867	2L_13820867_SNP [dm3] 2L_13820867_SNP [dm6]	A	G	3.360e^-4	0.782	UPSTREAM b INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	20241832	X_20241832_DEL [dm3] X_20370805_DEL [dm6]	CACC	GG	3.362e^-4	0.782	INTERGENIC
3L	1591261	3L_1591261_SNP [dm3] 3L_1591261_SNP [dm6]	G	T	3.362e^-4	0.782	INTRON CG13917
3L	4013168	3L_4013168_SNP [dm3] 3L_4013168_SNP [dm6]	T	C	3.363e^-4	0.782	INTERGENIC
2R	19622448	2R_19622448_INS [dm3] 2R_23734925_INS [dm6]	T	TGTT	3.367e^-4	0.782	UTR_3_PRIME egl UPSTREAM mir-4979 DOWNSTREAM Sesn
2R	16471777	2R_16471777_SNP [dm3] 2R_20584272_SNP [dm6]	A	T	3.373e^-4	0.782	UPSTREAM qsm & 4 others DOWNSTREAM mir-2498 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
2L	10676974	2L_10676974_DEL [dm3] 2L_10676974_DEL [dm6]	GCG	G	3.381e^-4	0.782	UPSTREAM CG17104 INTERGENIC
2R	19899758	2R_19899758_SNP [dm3] 2R_24012235_SNP [dm6]	A	G	3.384e^-4	0.782	UPSTREAM Unc-89 INTRON Unc-89	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	20473703	X_20473703_SNP [dm3] X_20602676_SNP [dm6]	G	T	3.386e^-4	0.782	INTRON RunxA
2L	14302550	2L_14302550_SNP [dm3] 2L_14302550_SNP [dm6]	A	T	3.386e^-4	0.782	INTRON wb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	2222027	3R_2222027_SNP [dm3] 3R_6396305_SNP [dm6]	C	T	3.390e^-4	0.782	INTRON Dmtn
2R	3656170	2R_3656170_SNP [dm3] 2R_7768665_SNP [dm6]	G	A	3.396e^-4	0.782	INTRON CG30497 & 1 other
2L	1147451	2L_1147451_SNP [dm3] 2L_1147451_SNP [dm6]	C	T	3.397e^-4	0.782	UPSTREAM CG4749 DOWNSTREAM MFS3 INTERGENIC
2L	17550802	2L_17550802_SNP [dm3] 2L_17550802_SNP [dm6]	G	A	3.400e^-4	0.782	INTERGENIC
2L	3354194	2L_3354194_SNP [dm3] 2L_3354194_SNP [dm6]	A	C	3.402e^-4	0.782	UTR_5_PRIME E23 INTRON E23
2L	9253430	2L_9253430_SNP [dm3] 2L_9253430_SNP [dm6]	T	A	3.404e^-4	0.782	UPSTREAM borr DOWNSTREAM lectin-30A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	6544834	X_6544834_SNP [dm3] X_6650801_SNP [dm6]	A	T	3.416e^-4	0.782	UTR_3_PRIME pigs	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	16242131	2R_16242131_SNP [dm3] 2R_20354626_SNP [dm6]	G	T	3.419e^-4	0.782	NON_SYNONYMOUS_CODING CG11192	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11410898	2R_11410898_SNP [dm3] 2R_15523393_SNP [dm6]	G	A	3.419e^-4	0.782	SYNONYMOUS_CODING Khc-73	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	11413908	2R_11413908_SNP [dm3] 2R_15526403_SNP [dm6]	C	A	3.419e^-4	0.782	SYNONYMOUS_CODING Khc-73	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6536449	2L_6536449_DEL [dm3] 2L_6536449_DEL [dm6]	TAT	T	3.422e^-4	0.782	UPSTREAM eya INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	12007530	2L_12007530_SNP [dm3] 2L_12007530_SNP [dm6]	T	C	3.425e^-4	0.782	UPSTREAM Rh5 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	14492314	X_14492314_SNP [dm3] X_14598281_SNP [dm6]	C	A	3.430e^-4	0.782	INTRON CG9413
X	22120216	X_22120216_SNP [dm3] X_22718380_SNP [dm6]	C	T	3.436e^-4	0.782	INTRON CR44997
X	16779492	X_16779492_SNP [dm3] X_16885459_SNP [dm6]	A	G	3.441e^-4	0.782	SYNONYMOUS_CODING Rcp DOWNSTREAM CG9099
2L	9248027	2L_9248027_SNP [dm3] 2L_9248027_SNP [dm6]	G	A	3.444e^-4	0.782	UTR_3_PRIME tai DOWNSTREAM tai
2R	4591498	2R_4591498_SNP [dm3] 2R_8703993_SNP [dm6]	A	C	3.451e^-4	0.782	SYNONYMOUS_CODING CG12376
X	7329519	X_7329519_SNP [dm3] X_7435486_SNP [dm6]	A	G	3.457e^-4	0.782	INTERGENIC
2R	10583650	2R_10583650_SNP [dm3] 2R_14696145_SNP [dm6]	T	A	3.463e^-4	0.782	INTRON mspo
3L	18636236	3L_18636236_SNP [dm3] 3L_18643136_SNP [dm6]	T	C	3.463e^-4	0.782	INTRON MYPT-75D
2L	14189445	2L_14189445_SNP [dm3] 2L_14189445_SNP [dm6]	A	C	3.470e^-4	0.782	INTRON Dyrk2
3L	13139838	3L_13139838_SNP [dm3] 3L_13146738_SNP [dm6]	G	A	3.472e^-4	0.782	INTERGENIC
3L	8437934	3L_8437934_INS [dm3] 3L_8444834_INS [dm6]	T	TTCCCCAAGCT...	3.475e^-4	0.782	INTRON CG6983	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4201634	2L_4201634_SNP [dm3] 2L_4201634_SNP [dm6]	C	T	3.481e^-4	0.782	SYNONYMOUS_CODING ft
2R	16890290	2R_16890290_SNP [dm3] 2R_21002785_SNP [dm6]	C	G	3.484e^-4	0.782	NON_SYNONYMOUS_CODING CG10543	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9286020	3L_9286020_SNP [dm3] 3L_9292920_SNP [dm6]	C	T	3.493e^-4	0.782	INTERGENIC
2R	17100006	2R_17100006_SNP [dm3] 2R_21212501_SNP [dm6]	C	T	3.504e^-4	0.782	DOWNSTREAM CG4302 INTRON CG44245
3L	17146307	3L_17146307_SNP [dm3] 3L_17153207_SNP [dm6]	G	A	3.504e^-4	0.782	INTRON Rbp6
2R	19480149	2R_19480149_SNP [dm3] 2R_23592626_SNP [dm6]	G	A	3.504e^-4	0.782	INTRON apt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6366617	3L_6366617_SNP [dm3] 3L_6373517_SNP [dm6]	T	A	3.505e^-4	0.782	INTERGENIC
2L	6780081	2L_6780081_SNP [dm3] 2L_6780081_SNP [dm6]	T	C	3.505e^-4	0.782	SYNONYMOUS_CODING nrv1
X	2479024	X_2479024_SNP [dm3] X_2584991_SNP [dm6]	T	A	3.506e^-4	0.782	SPLICE_SITE_REGION CG13760 UPSTREAM wds INTRON CG13760	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4200187	2L_4200187_SNP [dm3] 2L_4200187_SNP [dm6]	C	T	3.506e^-4	0.782	NON_SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1009846	3L_1009846_DEL [dm3] 3L_1009846_DEL [dm6]	GGGTCTAATAAAATACACA...	G	3.508e^-4	0.782	INTRON trio
3L	12405671	3L_12405671_SNP [dm3] 3L_12412571_SNP [dm6]	T	C	3.509e^-4	0.782	INTRON CG32103
3L	2757632	3L_2757632_SNP [dm3] 3L_2757632_SNP [dm6]	C	T	3.510e^-4	0.782	INTRON Mrtf
2L	9253428	2L_9253428_INS [dm3] 2L_9253428_INS [dm6]	G	CACGACATAAAAACAAAAA...	3.519e^-4	0.782	UPSTREAM borr DOWNSTREAM lectin-30A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	14539813	2R_14539813_SNP [dm3] 2R_18652308_SNP [dm6]	C	T	3.520e^-4	0.782	INTRON SP2637	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	15674519	2R_15674519_SNP [dm3] 2R_19787014_SNP [dm6]	C	T	3.521e^-4	0.782	EXON CR45231
X	22122743	X_22122743_SNP [dm3] X_22720907_SNP [dm6]	T	G	3.525e^-4	0.782	INTRON CR44997	transposable element FlyBase
2R	8875880	2R_8875880_SNP [dm3] 2R_12988375_SNP [dm6]	T	C	3.545e^-4	0.782	INTERGENIC
3R	25095068	3R_25095068_SNP [dm3] 3R_29269346_SNP [dm6]	G	C	3.550e^-4	0.782	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	1264466	2L_1264466_SNP [dm3] 2L_1264466_SNP [dm6]	T	C	3.555e^-4	0.782	INTRON robo3	TF binding site BDTNP1_TFBS_dl
2L	17262203	2L_17262203_SNP [dm3] 2L_17262203_SNP [dm6]	G	A	3.562e^-4	0.782	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16302818	2L_16302818_SNP [dm3] 2L_16302818_SNP [dm6]	C	A	3.566e^-4	0.782	UTR_5_PRIME CG5869 UPSTREAM c_2_M	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA
X	15499373	X_15499373_SNP [dm3] X_15605340_SNP [dm6]	T	C	3.566e^-4	0.782	SYNONYMOUS_CODING sog	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6367464	3L_6367464_SNP [dm3] 3L_6374364_SNP [dm6]	T	C	3.567e^-4	0.782	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	13045210	3R_13045210_SNP [dm3] 3R_17219488_SNP [dm6]	T	A	3.570e^-4	0.782	INTRON CG31262
2R	13136697	2R_13136697_SNP [dm3] 2R_17249192_SNP [dm6]	G	T	3.573e^-4	0.782	INTRON mbl
3R	23935392	3R_23935392_SNP [dm3] 3R_28109670_SNP [dm6]	C	T	3.576e^-4	0.782	INTERGENIC
3L	12240374	3L_12240374_SNP [dm3] 3L_12247274_SNP [dm6]	T	C	3.581e^-4	0.782	INTRON app
X	20956029	X_20956029_SNP [dm3] X_21085002_SNP [dm6]	A	G	3.585e^-4	0.782	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	14997717	2L_14997717_SNP [dm3] 2L_14997717_SNP [dm6]	A	G	3.586e^-4	0.782	UPSTREAM mol INTERGENIC	TF binding site mE1_TFBS_Trl
3L	7402630	3L_7402630_SNP [dm3] 3L_7409530_SNP [dm6]	C	T	3.589e^-4	0.782	INTRON CR44525 EXON CR44525
3L	22881793	3L_22881793_SNP [dm3] 3L_22888693_SNP [dm6]	C	A	3.591e^-4	0.782	UPSTREAM slif INTRON slif	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	548357	2L_548357_SNP [dm3] 2L_548357_SNP [dm6]	A	G	3.592e^-4	0.782	INTRON Ets21C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13592911	3L_13592911_SNP [dm3] 3L_13599811_SNP [dm6]	A	C	3.596e^-4	0.782	INTRON bru-3 EXON CR45120
2R	19203065	2R_19203065_SNP [dm3] 2R_23315542_SNP [dm6]	A	C	3.603e^-4	0.783	INTERGENIC
X	22132026	X_22132026_SNP [dm3] X_22730190_SNP [dm6]	C	T	3.620e^-4	0.783	INTRON CR44997	transposable element FlyBase
3L	16693602	3L_16693602_SNP [dm3] 3L_16700502_SNP [dm6]	C	T	3.620e^-4	0.783	INTRON Lasp & 1 other
3L	2382641	3L_2382641_SNP [dm3] 3L_2382641_SNP [dm6]	A	T	3.623e^-4	0.783	INTRON CG45186	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11526657	3R_11526657_SNP [dm3] 3R_15700935_SNP [dm6]	G	A	3.625e^-4	0.783	INTERGENIC
2L	7353984	2L_7353984_SNP [dm3] 2L_7353984_SNP [dm6]	G	A	3.630e^-4	0.783	INTERGENIC
2L	9135912	2L_9135912_SNP [dm3] 2L_9135912_SNP [dm6]	G	T	3.632e^-4	0.783	INTRON CG32982
2L	2399333	2L_2399333_SNP [dm3] 2L_2399333_SNP [dm6]	T	A	3.637e^-4	0.783	UPSTREAM VGlut INTRON VGlut
3L	10491743	3L_10491743_SNP [dm3] 3L_10498643_SNP [dm6]	G	T	3.649e^-4	0.783	INTRON A2bp1
3R	21017758	3R_21017758_SNP [dm3] 3R_25192036_SNP [dm6]	G	A	3.649e^-4	0.783	NON_SYNONYMOUS_CODING dan UTR_3_PRIME dan INTRON lobo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15530077	2R_15530077_SNP [dm3] 2R_19642572_SNP [dm6]	C	T	3.650e^-4	0.783	UPSTREAM CG15124 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_run
X	14815897	X_14815897_SNP [dm3] X_14921864_SNP [dm6]	C	T	3.652e^-4	0.783	INTRON Flo2 & 1 other
X	14815898	X_14815898_SNP [dm3] X_14921865_SNP [dm6]	T	C	3.652e^-4	0.783	INTRON Flo2 & 1 other
2R	16793430	2R_16793430_SNP [dm3] 2R_20905925_SNP [dm6]	A	G	3.657e^-4	0.783	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	20942903	3R_20942903_SNP [dm3] 3R_25117181_SNP [dm6]	A	T	3.673e^-4	0.783	DOWNSTREAM CG31510 INTRON CG31108
2L	8386013	2L_8386013_SNP [dm3] 2L_8386013_SNP [dm6]	T	A	3.676e^-4	0.783	UPSTREAM CG13384 INTRON CG13384	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2422774	X_2422774_SNP [dm3] X_2528741_SNP [dm6]	C	A	3.677e^-4	0.783	INTRON trol	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23923140	3R_23923140_SNP [dm3] 3R_28097418_SNP [dm6]	G	T	3.678e^-4	0.783	INTERGENIC
3R	23923142	3R_23923142_SNP [dm3] 3R_28097420_SNP [dm6]	T	C	3.678e^-4	0.783	INTERGENIC
3R	14910846	3R_14910846_SNP [dm3] 3R_19085124_SNP [dm6]	A	G	3.697e^-4	0.784	INTRON cdi
3R	18093374	3R_18093374_SNP [dm3] 3R_22267652_SNP [dm6]	C	T	3.723e^-4	0.784	INTRON SKIP
2R	9737128	2R_9737128_DEL [dm3] 2R_13849623_DEL [dm6]	TGA	T	3.734e^-4	0.784	FRAME_SHIFT CG30484 UPSTREAM CG30485
2R	8535464	2R_8535464_SNP [dm3] 2R_12647959_SNP [dm6]	C	G	3.735e^-4	0.784	UTR_5_PRIME CG8785
3L	2545557	3L_2545557_SNP [dm3] 3L_2545557_SNP [dm6]	A	G	3.751e^-4	0.784	INTRON Spn
X	22138215	X_22138215_SNP [dm3] X_22736379_SNP [dm6]	G	T	3.754e^-4	0.784	INTRON CR44997
3L	1417642	3L_1417642_SNP [dm3] 3L_1417642_SNP [dm6]	C	T	3.756e^-4	0.784	SYNONYMOUS_CODING FucTD INTRON Ptp61F	TF binding site mE1_TFBS_chinmo
2L	9854184	2L_9854184_SNP [dm3] 2L_9854184_SNP [dm6]	A	G	3.765e^-4	0.784	INTRON nAChRalpha6
2R	6571006	2R_6571006_SNP [dm3] 2R_10683501_SNP [dm6]	A	T	3.770e^-4	0.784	INTRON stan	TF binding site BDTNP1_TFBS_dl
3L	4515331	3L_4515331_SNP [dm3] 3L_4515331_SNP [dm6]	T	G	3.773e^-4	0.784	INTRON Tie	TF binding site mE1_TFBS_chinmo
3R	23637504	3R_23637504_SNP [dm3] 3R_27811782_SNP [dm6]	A	C	3.787e^-4	0.784	INTRON CG34353
2L	10021016	2L_10021016_SNP [dm3] 2L_10021016_SNP [dm6]	T	C	3.790e^-4	0.784	INTERGENIC
X	22132122	X_22132122_SNP [dm3] X_22730286_SNP [dm6]	T	C	3.790e^-4	0.784	INTRON CR44997	transposable element FlyBase
3R	21188187	3R_21188187_SNP [dm3] 3R_25362465_SNP [dm6]	A	T	3.792e^-4	0.784	INTRON Fur1
X	21037612	X_21037612_SNP [dm3] X_21166585_SNP [dm6]	C	T	3.804e^-4	0.784	INTERGENIC
3L	6366591	3L_6366591_SNP [dm3] 3L_6373491_SNP [dm6]	G	A	3.805e^-4	0.784	INTERGENIC
2L	4307497	2L_4307497_SNP [dm3] 2L_4307497_SNP [dm6]	T	A	3.807e^-4	0.784	INTRON tutl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3119210	2L_3119210_SNP [dm3] 2L_3119210_SNP [dm6]	A	C	3.812e^-4	0.784	INTRON toc
3L	772028	3L_772028_SNP [dm3] 3L_772028_SNP [dm6]	G	T	3.813e^-4	0.784	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13284002	3L_13284002_DEL [dm3] 3L_13290902_DEL [dm6]	CC	C	3.816e^-4	0.784	DOWNSTREAM CR43912 EXON CR43912
2L	5296186	2L_5296186_SNP [dm3] 2L_5296186_SNP [dm6]	C	T	3.817e^-4	0.784	INTRON vri
3L	775717	3L_775717_SNP [dm3] 3L_775717_SNP [dm6]	T	A	3.821e^-4	0.784	INTERGENIC	TF binding site mE1_TFBS_inv mE1_TFBS_Kr
2R	11412577	2R_11412577_SNP [dm3] 2R_15525072_SNP [dm6]	C	T	3.822e^-4	0.784	SYNONYMOUS_CODING Khc-73
2R	18894536	2R_18894536_SNP [dm3] 2R_23007013_SNP [dm6]	T	C	3.823e^-4	0.784	INTRON twi	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	17450524	X_17450524_MNP [dm3] X_17556491_MNP [dm6]	AAA	TTG	3.823e^-4	0.784	INTRON CG43658
3R	23335112	3R_23335112_SNP [dm3] 3R_27509390_SNP [dm6]	G	A	3.827e^-4	0.784	INTERGENIC
3R	18154526	3R_18154526_INS [dm3] 3R_22328804_INS [dm6]	T	TGAAGGCCTG	3.828e^-4	0.784	UPSTREAM CG7080 INTERGENIC
2L	6108543	2L_6108543_SNP [dm3] 2L_6108543_SNP [dm6]	T	G	3.830e^-4	0.784	INTRON stai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	13556180	2L_13556180_SNP [dm3] 2L_13556180_SNP [dm6]	T	C	3.830e^-4	0.784	INTRON kuz
X	7331220	X_7331220_SNP [dm3] X_7437187_SNP [dm6]	C	A	3.832e^-4	0.784	INTERGENIC
2L	9244821	2L_9244821_SNP [dm3] 2L_9244821_SNP [dm6]	C	T	3.834e^-4	0.784	INTRON tai
2L	7196077	2L_7196077_SNP [dm3] 2L_7196077_SNP [dm6]	G	A	3.834e^-4	0.784	INTRON CG4502
3L	7399158	3L_7399158_MNP [dm3] 3L_7406058_MNP [dm6]	TCCCA	ATTGG	3.840e^-4	0.784	UPSTREAM pncr015:3L INTERGENIC
3R	20605807	3R_20605807_SNP [dm3] 3R_24780085_SNP [dm6]	T	C	3.840e^-4	0.784	SYNONYMOUS_CODING CG42331	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	9473397	2L_9473397_SNP [dm3] 2L_9473397_SNP [dm6]	G	A	3.842e^-4	0.784	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	15645604	X_15645604_SNP [dm3] X_15751571_SNP [dm6]	A	T	3.843e^-4	0.784	UTR_3_PRIME CG8239 DOWNSTREAM Graf & 1 other
2L	10536112	2L_10536112_SNP [dm3] 2L_10536112_SNP [dm6]	T	C	3.850e^-4	0.784	SYNONYMOUS_CODING CG18302
2L	9516604	2L_9516604_SNP [dm3] 2L_9516604_SNP [dm6]	G	A	3.854e^-4	0.784	NON_SYNONYMOUS_CODING CG33298
2L	12308771	2L_12308771_DEL [dm3] 2L_12308771_DEL [dm6]	GATG	G	3.854e^-4	0.784	INTRON aret
2L	5220875	2L_5220875_SNP [dm3] 2L_5220875_SNP [dm6]	G	T	3.867e^-4	0.784	SYNONYMOUS_CODING tkv	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14658648	2R_14658648_INS [dm3] 2R_18771143_INS [dm6]	C	TCTTGT	3.869e^-4	0.784	UPSTREAM Mctp DOWNSTREAM tRNA:CR30229 INTRON Mctp
3R	20356682	3R_20356682_SNP [dm3] 3R_24530960_SNP [dm6]	C	G	3.871e^-4	0.784	UPSTREAM CG13623 INTRON ana1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7206497	2R_7206497_DEL [dm3] 2R_11318992_DEL [dm6]	GGT	A	3.872e^-4	0.784	UPSTREAM nompA DOWNSTREAM Or47b INTERGENIC
3R	11481374	3R_11481374_SNP [dm3] 3R_15655652_SNP [dm6]	T	C	3.873e^-4	0.784	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	17673316	3L_17673316_SNP [dm3] 3L_17680216_SNP [dm6]	A	T	3.875e^-4	0.784	INTRON CG34251
3R	21126986	3R_21126986_SNP [dm3] 3R_25301264_SNP [dm6]	C	G	3.876e^-4	0.784	NON_SYNONYMOUS_CODING CG13659
3R	14487466	3R_14487466_SNP [dm3] 3R_18661744_SNP [dm6]	A	G	3.884e^-4	0.785	SYNONYMOUS_CODING Cpsf73 DOWNSTREAM CstF-64	TF binding site mE1_TFBS_cad
3R	14458924	3R_14458924_SNP [dm3] 3R_18633202_SNP [dm6]	T	C	3.886e^-4	0.785	INTRON qin & 1 other
2L	1060556	2L_1060556_SNP [dm3] 2L_1060556_SNP [dm6]	C	T	3.892e^-4	0.785	INTRON S
2R	16950743	2R_16950743_SNP [dm3] 2R_21063238_SNP [dm6]	T	C	3.898e^-4	0.785	UTR_3_PRIME Cht12 DOWNSTREAM Cht8	TF binding site mE1_TFBS_chinmo
X	22063444	X_22063444_SNP [dm3] X_22661608_SNP [dm6]	A	T	3.899e^-4	0.785	INTRON CR44997
3L	3367780	3L_3367780_SNP [dm3] 3L_3367780_SNP [dm6]	A	T	3.903e^-4	0.785	UTR_3_PRIME kst
3R	23079461	3R_23079461_SNP [dm3] 3R_27253739_SNP [dm6]	T	C	3.917e^-4	0.787	UPSTREAM pll INTRON TfIIA-L	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21119113	3R_21119113_SNP [dm3] 3R_25293391_SNP [dm6]	G	A	3.921e^-4	0.787	UPSTREAM CG31098 DOWNSTREAM CG31102 INTERGENIC
3R	20942892	3R_20942892_SNP [dm3] 3R_25117170_SNP [dm6]	A	G	3.927e^-4	0.787	DOWNSTREAM CG31510 INTRON CG31108
2L	11948704	2L_11948704_SNP [dm3] 2L_11948704_SNP [dm6]	C	A	3.941e^-4	0.789	UTR_3_PRIME CG16964 DOWNSTREAM CG16964	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	16693587	3L_16693587_SNP [dm3] 3L_16700487_SNP [dm6]	A	G	3.983e^-4	0.791	INTRON Lasp & 1 other
2R	11414004	2R_11414004_SNP [dm3] 2R_15526499_SNP [dm6]	G	A	3.988e^-4	0.791	SYNONYMOUS_CODING Khc-73	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2479557	3L_2479557_SNP [dm3] 3L_2479557_SNP [dm6]	T	A	3.990e^-4	0.791	INTRON CG45186
3L	7998576	3L_7998576_SNP [dm3] 3L_8005476_SNP [dm6]	G	T	3.991e^-4	0.791	INTRON nmo	TF binding site BDTNP1_TFBS_dl
2R	17025665	2R_17025665_DEL [dm3] 2R_21138160_DEL [dm6]	TA	T	3.992e^-4	0.791	INTRON Magi	TF binding site mE1_TFBS_chinmo
2L	12576058	2L_12576058_SNP [dm3] 2L_12576058_SNP [dm6]	C	A	3.993e^-4	0.791	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11421186	2L_11421186_SNP [dm3] 2L_11421186_SNP [dm6]	C	A	3.994e^-4	0.791	INTERGENIC
2R	9746850	2R_9746850_SNP [dm3] 2R_13859345_SNP [dm6]	T	C	3.995e^-4	0.791	SYNONYMOUS_CODING Uba3 UPSTREAM tum	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	21120727	3R_21120727_SNP [dm3] 3R_25295005_SNP [dm6]	A	C	3.999e^-4	0.791	INTRON CG31102
2R	14658650	2R_14658650_SNP [dm3] 2R_18771145_SNP [dm6]	A	T	4.004e^-4	0.791	UPSTREAM Mctp DOWNSTREAM tRNA:CR30229 INTRON Mctp
3L	2382771	3L_2382771_SNP [dm3] 3L_2382771_SNP [dm6]	C	T	4.007e^-4	0.791	INTRON CG45186	TF binding site mE1_TFBS_sens
2L	684633	2L_684633_SNP [dm3] 2L_684633_SNP [dm6]	A	C	4.009e^-4	0.791	INTRON ds
X	3306157	X_3306157_SNP [dm3] X_3412124_SNP [dm6]	A	G	4.010e^-4	0.791	INTRON CR44999 & 1 other
3R	23380607	3R_23380607_SNP [dm3] 3R_27554885_SNP [dm6]	T	C	4.011e^-4	0.791	INTRON Klp98A
2L	16303084	2L_16303084_SNP [dm3] 2L_16303084_SNP [dm6]	T	A	4.013e^-4	0.791	UPSTREAM c_2_M & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	776866	3L_776866_SNP [dm3] 3L_776866_SNP [dm6]	A	C	4.017e^-4	0.791	INTERGENIC
X	8679588	X_8679588_SNP [dm3] X_8785555_SNP [dm6]	T	C	4.037e^-4	0.792	UPSTREAM Lim1 INTRON Lim1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
2R	11407272	2R_11407272_SNP [dm3] 2R_15519767_SNP [dm6]	T	G	4.040e^-4	0.792	NON_SYNONYMOUS_CODING Khc-73
3L	1095870	3L_1095870_SNP [dm3] 3L_1095870_SNP [dm6]	C	T	4.043e^-4	0.792	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13597238	2R_13597238_SNP [dm3] 2R_17709733_SNP [dm6]	A	G	4.044e^-4	0.792	UPSTREAM CG6424 INTRON CG6424
3L	20617586	3L_20617586_SNP [dm3] 3L_20624486_SNP [dm6]	C	T	4.047e^-4	0.792	EXON CR44684	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9747207	2R_9747207_SNP [dm3] 2R_13859702_SNP [dm6]	C	T	4.048e^-4	0.792	SYNONYMOUS_CODING Uba3 DOWNSTREAM CG16935	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	14959829	2L_14959829_INS [dm3] 2L_14959829_INS [dm6]	A	ACA	4.055e^-4	0.792	INTRON CG42313
3R	7972855	3R_7972855_SNP [dm3] 3R_12147133_SNP [dm6]	C	T	4.069e^-4	0.794	INTRON dpr15
3R	23892522	3R_23892522_SNP [dm3] 3R_28066800_SNP [dm6]	C	T	4.073e^-4	0.794	INTRON CG34362
X	20240447	X_20240447_SNP [dm3] X_20369420_SNP [dm6]	T	G	4.082e^-4	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	19478467	3R_19478467_SNP [dm3] 3R_23652745_SNP [dm6]	C	T	4.083e^-4	0.794	INTRON CG31145
3R	16291477	3R_16291477_SNP [dm3] 3R_20465755_SNP [dm6]	T	G	4.092e^-4	0.795	INTRON Gfrl
X	8679667	X_8679667_DEL [dm3] X_8785634_DEL [dm6]	TTTT	T	4.102e^-4	0.795	UPSTREAM Lim1 INTRON Lim1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
3R	18289888	3R_18289888_SNP [dm3] 3R_22464166_SNP [dm6]	C	G	4.103e^-4	0.795	UTR_3_PRIME AP-2mu UPSTREAM CG7054 INTRON AP-2mu	TF binding site mE1_TFBS_cad
3L	7012273	3L_7012273_SNP [dm3] 3L_7019173_SNP [dm6]	A	G	4.104e^-4	0.795	INTRON Mp
2L	9264759	2L_9264759_SNP [dm3] 2L_9264759_SNP [dm6]	A	G	4.106e^-4	0.795	INTRON Ggamma30A
2R	20533863	2R_20533863_SNP [dm3] 2R_24646340_SNP [dm6]	G	A	4.117e^-4	0.796	INTERGENIC
2R	14990628	2R_14990628_SNP [dm3] 2R_19103123_SNP [dm6]	A	G	4.125e^-4	0.797	INTRON 5-HT1A
X	22063980	X_22063980_SNP [dm3] X_22662144_SNP [dm6]	G	A	4.136e^-4	0.798	INTRON CR44997
X	22124520	X_22124520_SNP [dm3] X_22722684_SNP [dm6]	C	G	4.140e^-4	0.798	INTRON CR44997	transposable element FlyBase
3L	19087963	3L_19087963_SNP [dm3] 3L_19094863_SNP [dm6]	A	G	4.158e^-4	0.798	DOWNSTREAM CG11577 & 1 other INTERGENIC
X	22115454	X_22115454_SNP [dm3] X_22713618_SNP [dm6]	C	A	4.164e^-4	0.798	INTRON CR44997	transposable element FlyBase
3R	24116977	3R_24116977_SNP [dm3] 3R_28291255_SNP [dm6]	G	T	4.168e^-4	0.798	UPSTREAM Mst98Ca INTERGENIC
2L	10536228	2L_10536228_SNP [dm3] 2L_10536228_SNP [dm6]	C	T	4.184e^-4	0.798	SYNONYMOUS_CODING CG18302
X	16779743	X_16779743_SNP [dm3] X_16885710_SNP [dm6]	A	G	4.188e^-4	0.798	SYNONYMOUS_CODING CG9099 UTR_3_PRIME Rcp INTRON Rcp
2L	13536062	2L_13536062_SNP [dm3] 2L_13536062_SNP [dm6]	T	C	4.193e^-4	0.798	UPSTREAM CG15638 INTRON B4
3L	777034	3L_777034_SNP [dm3] 3L_777034_SNP [dm6]	C	G	4.198e^-4	0.798	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2458571	3L_2458571_SNP [dm3] 3L_2458571_SNP [dm6]	G	A	4.200e^-4	0.798	INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15017785	2L_15017785_SNP [dm3] 2L_15017785_SNP [dm6]	A	C	4.202e^-4	0.798	INTRON GABA-B-R1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12488516	2R_12488516_SNP [dm3] 2R_16601011_SNP [dm6]	A	T	4.203e^-4	0.798	DOWNSTREAM CG5089 INTRON CG8303
2R	7716931	2R_7716931_SNP [dm3] 2R_11829426_SNP [dm6]	A	T	4.206e^-4	0.798	INTRON Sobp
2L	4590527	2L_4590527_SNP [dm3] 2L_4590527_SNP [dm6]	C	T	4.209e^-4	0.798	INTRON dp
X	22132786	X_22132786_SNP [dm3] X_22730950_SNP [dm6]	A	G	4.210e^-4	0.798	INTRON CR44997	transposable element FlyBase
2L	13264241	2L_13264241_SNP [dm3] 2L_13264241_SNP [dm6]	A	G	4.220e^-4	0.798	DOWNSTREAM CG31848 INTRON CG44085
2R	9334599	2R_9334599_SNP [dm3] 2R_13447094_SNP [dm6]	A	G	4.221e^-4	0.798	UPSTREAM CG30062 INTRON cnn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	11931324	3L_11931324_SNP [dm3] 3L_11938224_SNP [dm6]	C	A	4.223e^-4	0.798	SYNONYMOUS_CODING CG44837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12334826	2R_12334826_SNP [dm3] 2R_16447321_SNP [dm6]	C	T	4.223e^-4	0.798	SYNONYMOUS_CODING CG15925
X	20412615	X_20412615_SNP [dm3] X_20541588_SNP [dm6]	T	G	4.225e^-4	0.798	INTRON RunxB
2R	14348152	2R_14348152_SNP [dm3] 2R_18460647_SNP [dm6]	G	T	4.233e^-4	0.798	SPLICE_SITE_REGION CG30116 INTRON CG30116	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12153364	2R_12153364_SNP [dm3] 2R_16265859_SNP [dm6]	G	A	4.235e^-4	0.798	SPLICE_SITE_REGION csul INTRON csul
2R	18568036	2R_18568036_SNP [dm3] 2R_22680531_SNP [dm6]	G	C	4.235e^-4	0.798	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3R	23847447	3R_23847447_SNP [dm3] 3R_28021725_SNP [dm6]	T	G	4.236e^-4	0.798	INTERGENIC
3L	17673302	3L_17673302_SNP [dm3] 3L_17680202_SNP [dm6]	A	G	4.243e^-4	0.798	INTRON CG34251
3L	15991042	3L_15991042_SNP [dm3] 3L_15997942_SNP [dm6]	T	G	4.267e^-4	0.798	INTRON CG5830
3L	12404547	3L_12404547_SNP [dm3] 3L_12411447_SNP [dm6]	G	A	4.275e^-4	0.798	INTRON CG32103
X	13706953	X_13706953_DEL [dm3] X_13812920_DEL [dm6]	TCTTTGATAAGGCTTATC...	T	4.286e^-4	0.798	DOWNSTREAM Clic & 1 other INTERGENIC
2R	9335787	2R_9335787_SNP [dm3] 2R_13448282_SNP [dm6]	C	T	4.291e^-4	0.798	INTRON cnn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=9.906e^-5)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.006365

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	8.0846	0.0176

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2181 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	22122057	X_22122057_SNP [dm3] X_22720221_SNP [dm6]	C	T	3.557e^-7	0.372	INTRON CR44997	transposable element FlyBase
2L	11774646	2L_11774646_SNP [dm3] 2L_11774646_SNP [dm6]	G	A	3.965e^-7	0.372	INTERGENIC
X	7651622	X_7651622_SNP [dm3] X_7757589_SNP [dm6]	G	A	1.602e^-6	0.516	INTERGENIC
2L	9971425	2L_9971425_SNP [dm3] 2L_9971425_SNP [dm6]	A	G	2.041e^-6	0.516	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	22130809	X_22130809_SNP [dm3] X_22728973_SNP [dm6]	G	T	2.044e^-6	0.516	INTRON CR44997
X	22121902	X_22121902_SNP [dm3] X_22720066_SNP [dm6]	G	A	2.568e^-6	0.516	INTRON CR44997	transposable element FlyBase
3L	2880956	3L_2880956_SNP [dm3] 3L_2880956_SNP [dm6]	A	T	2.818e^-6	0.516	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	22132050	X_22132050_SNP [dm3] X_22730214_SNP [dm6]	T	C	3.369e^-6	0.516	INTRON CR44997	transposable element FlyBase
3L	1610365	3L_1610365_SNP [dm3] 3L_1610365_SNP [dm6]	G	C	3.516e^-6	0.516	DOWNSTREAM CG12105 INTRON CG33791 & 1 other
X	22122014	X_22122014_SNP [dm3] X_22720178_SNP [dm6]	C	A	3.557e^-6	0.516	INTRON CR44997	transposable element FlyBase
X	22124045	X_22124045_SNP [dm3] X_22722209_SNP [dm6]	C	T	3.752e^-6	0.516	INTRON CR44997
X	18372916	X_18372916_INS [dm3] X_18478883_INS [dm6]	A	AATACGGA	4.993e^-6	0.516	INTRON CG32547
X	22123959	X_22123959_SNP [dm3] X_22722123_SNP [dm6]	C	T	5.794e^-6	0.516	INTRON CR44997
X	22123227	X_22123227_SNP [dm3] X_22721391_SNP [dm6]	C	A	6.348e^-6	0.516	INTRON CR44997	transposable element FlyBase
X	22121941	X_22121941_SNP [dm3] X_22720105_SNP [dm6]	T	C	6.658e^-6	0.516	INTRON CR44997	transposable element FlyBase
X	22124619	X_22124619_SNP [dm3] X_22722783_SNP [dm6]	A	G	6.807e^-6	0.516	INTRON CR44997	transposable element FlyBase
X	22124626	X_22124626_SNP [dm3] X_22722790_SNP [dm6]	T	C	6.860e^-6	0.516	INTRON CR44997	transposable element FlyBase
2R	9490098	2R_9490098_SNP [dm3] 2R_13602593_SNP [dm6]	T	C	7.378e^-6	0.516	INTERGENIC
X	22132026	X_22132026_SNP [dm3] X_22730190_SNP [dm6]	C	T	7.878e^-6	0.516	INTRON CR44997	transposable element FlyBase
2L	12547157	2L_12547157_SNP [dm3] 2L_12547157_SNP [dm6]	G	A	8.815e^-6	0.516	UPSTREAM bun INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
2L	1242374	2L_1242374_SNP [dm3] 2L_1242374_SNP [dm6]	C	A	8.830e^-6	0.516	UTR_3_PRIME CG5397 DOWNSTREAM CG5397	TF binding site mE1_TFBS_chinmo
2R	13134494	2R_13134494_SNP [dm3] 2R_17246989_SNP [dm6]	C	T	8.918e^-6	0.516	SYNONYMOUS_CODING CG12699 UPSTREAM CG18469 INTRON mbl
3L	2581474	3L_2581474_SNP [dm3] 3L_2581474_SNP [dm6]	T	C	9.615e^-6	0.516	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	22124348	X_22124348_SNP [dm3] X_22722512_SNP [dm6]	G	T	9.634e^-6	0.516	INTRON CR44997	transposable element FlyBase
X	22130812	X_22130812_SNP [dm3] X_22728976_SNP [dm6]	C	T	9.842e^-6	0.516	INTRON CR44997
X	18372917	X_18372917_SNP [dm3] X_18478884_SNP [dm6]	G	A	9.969e^-6	0.516	INTRON CG32547
X	22122743	X_22122743_SNP [dm3] X_22720907_SNP [dm6]	T	G	1.021e^-5	0.516	INTRON CR44997	transposable element FlyBase
X	22122763	X_22122763_SNP [dm3] X_22720927_SNP [dm6]	C	T	1.032e^-5	0.516	INTRON CR44997	transposable element FlyBase
X	22131747	X_22131747_SNP [dm3] X_22729911_SNP [dm6]	A	G	1.056e^-5	0.516	INTRON CR44997	transposable element FlyBase
X	22132485	X_22132485_SNP [dm3] X_22730649_SNP [dm6]	T	C	1.074e^-5	0.516	INTRON CR44997	transposable element FlyBase
X	22132122	X_22132122_SNP [dm3] X_22730286_SNP [dm6]	T	C	1.083e^-5	0.516	INTRON CR44997	transposable element FlyBase
X	22130814	X_22130814_INS [dm3] X_22728978_INS [dm6]	A	ATTTTCTGTTTACTACATG...	1.148e^-5	0.516	INTRON CR44997
2L	12942609	2L_12942609_SNP [dm3] 2L_12942609_SNP [dm6]	T	A	1.168e^-5	0.516	INTERGENIC
X	22129766	X_22129766_SNP [dm3] X_22727930_SNP [dm6]	G	A	1.188e^-5	0.516	INTRON CR44997
X	22130807	X_22130807_INS [dm3] X_22728971_INS [dm6]	C	CT	1.201e^-5	0.516	INTRON CR44997
X	22122549	X_22122549_SNP [dm3] X_22720713_SNP [dm6]	G	T	1.221e^-5	0.516	INTRON CR44997	transposable element FlyBase
X	22124349	X_22124349_SNP [dm3] X_22722513_SNP [dm6]	G	A	1.300e^-5	0.516	INTRON CR44997	transposable element FlyBase
3R	14485879	3R_14485879_SNP [dm3] 3R_18660157_SNP [dm6]	G	T	1.302e^-5	0.516	SYNONYMOUS_CODING CstF-64 UPSTREAM CG31224 DOWNSTREAM Cpsf73	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	22116836	X_22116836_SNP [dm3] X_22715000_SNP [dm6]	C	G	1.323e^-5	0.516	INTRON CR44997
2R	13828774	2R_13828774_SNP [dm3] 2R_17941269_SNP [dm6]	T	C	1.363e^-5	0.516	INTERGENIC
X	22132048	X_22132048_SNP [dm3] X_22730212_SNP [dm6]	G	T	1.398e^-5	0.516	INTRON CR44997	transposable element FlyBase
2L	12547145	2L_12547145_SNP [dm3] 2L_12547145_SNP [dm6]	A	G	1.421e^-5	0.516	UPSTREAM bun INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	22123972	X_22123972_SNP [dm3] X_22722136_SNP [dm6]	G	C	1.462e^-5	0.516	INTRON CR44997
X	22131835	X_22131835_SNP [dm3] X_22729999_SNP [dm6]	T	A	1.497e^-5	0.516	INTRON CR44997	transposable element FlyBase
X	22132100	X_22132100_SNP [dm3] X_22730264_SNP [dm6]	C	A	1.500e^-5	0.516	INTRON CR44997	transposable element FlyBase
X	22123876	X_22123876_SNP [dm3] X_22722040_SNP [dm6]	T	G	1.509e^-5	0.516	INTRON CR44997
X	3041992	X_3041992_SNP [dm3] X_3147959_SNP [dm6]	C	A	1.509e^-5	0.516	INTRON N	TF binding site BDTNP1_TFBS_dl
3R	24412641	3R_24412641_SNP [dm3] 3R_28586919_SNP [dm6]	C	T	1.522e^-5	0.516	EXON MRE23	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	22124422	X_22124422_SNP [dm3] X_22722586_SNP [dm6]	T	C	1.536e^-5	0.516	INTRON CR44997	transposable element FlyBase
3L	2078460	3L_2078460_SNP [dm3] 3L_2078460_SNP [dm6]	G	T	1.542e^-5	0.516	INTRON sls
2L	12546775	2L_12546775_SNP [dm3] 2L_12546775_SNP [dm6]	C	T	1.551e^-5	0.516	UPSTREAM bun INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	18151295	3R_18151295_SNP [dm3] 3R_22325573_SNP [dm6]	G	C	1.579e^-5	0.516	INTERGENIC
X	3041991	X_3041991_SNP [dm3] X_3147958_SNP [dm6]	A	C	1.580e^-5	0.516	INTRON N	TF binding site BDTNP1_TFBS_dl
X	22129957	X_22129957_SNP [dm3] X_22728121_SNP [dm6]	A	T	1.580e^-5	0.516	INTRON CR44997
X	22129521	X_22129521_SNP [dm3] X_22727685_SNP [dm6]	C	A	1.620e^-5	0.516	INTRON CR44997
X	22120976	X_22120976_SNP [dm3] X_22719140_SNP [dm6]	A	G	1.641e^-5	0.516	INTRON CR44997
2L	12547152	2L_12547152_SNP [dm3] 2L_12547152_SNP [dm6]	G	A	1.682e^-5	0.516	UPSTREAM bun INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
2L	12547129	2L_12547129_SNP [dm3] 2L_12547129_SNP [dm6]	G	A	1.689e^-5	0.516	UPSTREAM bun INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	22129779	X_22129779_MNP [dm3] X_22727943_MNP [dm6]	ACT	TGA	1.756e^-5	0.516	INTRON CR44997
X	22132128	X_22132128_SNP [dm3] X_22730292_SNP [dm6]	G	T	1.785e^-5	0.516	INTRON CR44997	transposable element FlyBase
X	22124583	X_22124583_SNP [dm3] X_22722747_SNP [dm6]	C	T	1.789e^-5	0.516	INTRON CR44997	transposable element FlyBase
X	22131713	X_22131713_SNP [dm3] X_22729877_SNP [dm6]	A	G	1.876e^-5	0.516	INTRON CR44997	transposable element FlyBase
X	22129963	X_22129963_SNP [dm3] X_22728127_SNP [dm6]	A	C	1.881e^-5	0.516	INTRON CR44997
3R	14194852	3R_14194852_DEL [dm3] 3R_18369130_DEL [dm6]	AA	A	1.894e^-5	0.516	UTR_3_PRIME gl INTRON gl
3R	14486329	3R_14486329_SNP [dm3] 3R_18660607_SNP [dm6]	A	C	1.902e^-5	0.516	SYNONYMOUS_CODING CstF-64 DOWNSTREAM Cpsf73	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	12547150	2L_12547150_SNP [dm3] 2L_12547150_SNP [dm6]	C	T	2.005e^-5	0.516	UPSTREAM bun INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
X	22119622	X_22119622_SNP [dm3] X_22717786_SNP [dm6]	T	C	2.044e^-5	0.516	INTRON CR44997
X	22132139	X_22132139_SNP [dm3] X_22730303_SNP [dm6]	C	A	2.050e^-5	0.516	INTRON CR44997	transposable element FlyBase
2L	2001893	2L_2001893_SNP [dm3] 2L_2001893_SNP [dm6]	A	G	2.058e^-5	0.516	INTRON CG33543 EXON CR43464
X	22132786	X_22132786_SNP [dm3] X_22730950_SNP [dm6]	A	G	2.060e^-5	0.516	INTRON CR44997	transposable element FlyBase
X	22131112	X_22131112_SNP [dm3] X_22729276_SNP [dm6]	A	T	2.129e^-5	0.516	INTRON CR44997	transposable element FlyBase
X	22129907	X_22129907_INS [dm3] X_22728071_INS [dm6]	G	GTACGGTTAAG...	2.137e^-5	0.516	INTRON CR44997
2R	9124635	2R_9124635_SNP [dm3] 2R_13237130_SNP [dm6]	C	T	2.137e^-5	0.516	DOWNSTREAM CG4679 & 1 other INTERGENIC
X	1616708	X_1616708_SNP [dm3] X_1722675_SNP [dm6]	G	T	2.156e^-5	0.516	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	6425481	2R_6425481_SNP [dm3] 2R_10537976_SNP [dm6]	C	G	2.174e^-5	0.516	UPSTREAM snoRNA:lola-c & 1 other INTRON lola	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	22132087	X_22132087_SNP [dm3] X_22730251_SNP [dm6]	T	C	2.189e^-5	0.516	INTRON CR44997	transposable element FlyBase
2L	7766763	2L_7766763_SNP [dm3] 2L_7766763_SNP [dm6]	G	A	2.212e^-5	0.516	UPSTREAM CG7191 DOWNSTREAM CG7196 INTERGENIC
2L	11961309	2L_11961309_SNP [dm3] 2L_11961309_SNP [dm6]	T	G	2.227e^-5	0.516	INTRON CR43314 EXON CR43314
X	18372918	X_18372918_SNP [dm3] X_18478885_SNP [dm6]	C	T	2.242e^-5	0.516	INTRON CG32547
3L	10651926	3L_10651926_SNP [dm3] 3L_10658826_SNP [dm6]	T	A	2.388e^-5	0.516	INTRON CG32066	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	5981894	2R_5981894_SNP [dm3] 2R_10094389_SNP [dm6]	A	C	2.389e^-5	0.516	SYNONYMOUS_CODING CG2269	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	22124235	X_22124235_SNP [dm3] X_22722399_SNP [dm6]	T	A	2.390e^-5	0.516	INTRON CR44997	transposable element FlyBase
X	22130607	X_22130607_SNP [dm3] X_22728771_SNP [dm6]	T	G	2.410e^-5	0.516	INTRON CR44997
3R	18158999	3R_18158999_SNP [dm3] 3R_22333277_SNP [dm6]	C	T	2.434e^-5	0.516	NON_SYNONYMOUS_CODING CG5391 DOWNSTREAM CG13862 & 1 other
X	22128205	X_22128205_INS [dm3] X_22726369_INS [dm6]	G	GCTG	2.467e^-5	0.516	INTRON CR44997	transposable element FlyBase
X	22131151	X_22131151_SNP [dm3] X_22729315_SNP [dm6]	G	T	2.479e^-5	0.516	INTRON CR44997	transposable element FlyBase
2L	12546799	2L_12546799_SNP [dm3] 2L_12546799_SNP [dm6]	A	G	2.513e^-5	0.516	UPSTREAM bun INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	4340935	2L_4340935_SNP [dm3] 2L_4340935_SNP [dm6]	C	T	2.521e^-5	0.516	INTRON Atet
3R	10939401	3R_10939401_INS [dm3] 3R_15113679_INS [dm6]	T	AC	2.531e^-5	0.516	INTRON CG42788
2L	12546809	2L_12546809_SNP [dm3] 2L_12546809_SNP [dm6]	G	A	2.533e^-5	0.516	UPSTREAM bun INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2078739	3L_2078739_SNP [dm3] 3L_2078739_SNP [dm6]	C	A	2.538e^-5	0.516	INTRON sls
2L	12547139	2L_12547139_SNP [dm3] 2L_12547139_SNP [dm6]	T	C	2.609e^-5	0.516	UPSTREAM bun INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	22113199	X_22113199_SNP [dm3] X_22711363_SNP [dm6]	T	G	2.610e^-5	0.516	INTRON CR44997	transposable element FlyBase
X	22131085	X_22131085_SNP [dm3] X_22729249_SNP [dm6]	A	G	2.617e^-5	0.516	INTRON CR44997	transposable element FlyBase
X	22132423	X_22132423_SNP [dm3] X_22730587_SNP [dm6]	G	C	2.622e^-5	0.516	INTRON CR44997	transposable element FlyBase
X	22124753	X_22124753_SNP [dm3] X_22722917_SNP [dm6]	G	C	2.643e^-5	0.516	INTRON CR44997	transposable element FlyBase
2L	9946592	2L_9946592_SNP [dm3] 2L_9946592_SNP [dm6]	G	A	2.693e^-5	0.518	INTRON CG5853	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	22129970	X_22129970_SNP [dm3] X_22728134_SNP [dm6]	A	G	2.719e^-5	0.518	INTRON CR44997
X	22132663	X_22132663_SNP [dm3] X_22730827_SNP [dm6]	T	C	2.810e^-5	0.518	INTRON CR44997	transposable element FlyBase
X	22117826	X_22117826_SNP [dm3] X_22715990_SNP [dm6]	T	C	2.811e^-5	0.518	INTRON CR44997
X	22116509	X_22116509_SNP [dm3] X_22714673_SNP [dm6]	G	A	2.838e^-5	0.518	INTRON CR44997	transposable element FlyBase
3R	14486461	3R_14486461_SNP [dm3] 3R_18660739_SNP [dm6]	C	T	2.854e^-5	0.518	SYNONYMOUS_CODING CstF-64 DOWNSTREAM Cpsf73	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	19333222	2L_19333222_SNP [dm3] 2L_19333222_SNP [dm6]	A	G	2.874e^-5	0.518	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	22129962	X_22129962_SNP [dm3] X_22728126_SNP [dm6]	G	C	2.874e^-5	0.518	INTRON CR44997
2L	12546805	2L_12546805_SNP [dm3] 2L_12546805_SNP [dm6]	T	C	2.924e^-5	0.518	UPSTREAM bun INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16229363	2L_16229363_SNP [dm3] 2L_16229363_SNP [dm6]	T	G	2.930e^-5	0.518	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12547190	2L_12547190_SNP [dm3] 2L_12547190_SNP [dm6]	T	C	3.042e^-5	0.53	UPSTREAM bun INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
X	22133254	X_22133254_DEL [dm3] X_22731418_DEL [dm6]	GATGG	G	3.068e^-5	0.53	INTRON CR44997
X	22131957	X_22131957_DEL [dm3] X_22730121_DEL [dm6]	GCAGGAT	G	3.104e^-5	0.53	INTRON CR44997	transposable element FlyBase
2R	10034463	2R_10034463_INS [dm3] 2R_14146958_INS [dm6]	G	TA	3.110e^-5	0.53	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	22124520	X_22124520_SNP [dm3] X_22722684_SNP [dm6]	C	G	3.179e^-5	0.535	INTRON CR44997	transposable element FlyBase
X	22120396	X_22120396_INS [dm3] X_22718560_INS [dm6]	T	TCGGT	3.248e^-5	0.535	INTRON CR44997
X	22123698	X_22123698_SNP [dm3] X_22721862_SNP [dm6]	T	C	3.322e^-5	0.535	INTRON CR44997
2L	10744561	2L_10744561_SNP [dm3] 2L_10744561_SNP [dm6]	T	C	3.401e^-5	0.535	UTR_3_PRIME CG17124 UPSTREAM CG6729 DOWNSTREAM CG17124
X	22132957	X_22132957_SNP [dm3] X_22731121_SNP [dm6]	T	C	3.405e^-5	0.535	INTRON CR44997	transposable element FlyBase
X	3320777	X_3320777_SNP [dm3] X_3426744_SNP [dm6]	C	G	3.410e^-5	0.535	DOWNSTREAM tRNA:CR32493 INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl
X	22128079	X_22128079_DEL [dm3] X_22726243_DEL [dm6]	GGAACATAAGTGAAAAGTTT...	TGAG	3.438e^-5	0.535	INTRON CR44997	transposable element FlyBase
X	22128181	X_22128181_SNP [dm3] X_22726345_SNP [dm6]	T	G	3.489e^-5	0.535	INTRON CR44997	transposable element FlyBase
X	22115454	X_22115454_SNP [dm3] X_22713618_SNP [dm6]	C	A	3.491e^-5	0.535	INTRON CR44997	transposable element FlyBase
X	22120555	X_22120555_SNP [dm3] X_22718719_SNP [dm6]	A	G	3.528e^-5	0.535	INTRON CR44997
3L	788529	3L_788529_INS [dm3] 3L_788529_INS [dm6]	A	AA	3.528e^-5	0.535	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	22124643	X_22124643_SNP [dm3] X_22722807_SNP [dm6]	A	G	3.528e^-5	0.535	INTRON CR44997	transposable element FlyBase
3R	13955423	3R_13955423_SNP [dm3] 3R_18129701_SNP [dm6]	C	T	3.562e^-5	0.535	INTRON sr	TF binding site mE1_TFBS_inv
3L	5368752	3L_5368752_SNP [dm3] 3L_5375652_SNP [dm6]	A	T	3.632e^-5	0.535	INTERGENIC
X	22132259	X_22132259_SNP [dm3] X_22730423_SNP [dm6]	G	A	3.639e^-5	0.535	INTRON CR44997	transposable element FlyBase
2R	15274354	2R_15274354_SNP [dm3] 2R_19386849_SNP [dm6]	C	T	3.653e^-5	0.535	NON_SYNONYMOUS_CODING CG10081 SPLICE_SITE_REGION CG10081
X	15031584	X_15031584_SNP [dm3] X_15137551_SNP [dm6]	T	G	3.655e^-5	0.535	DOWNSTREAM RpL37a & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	22132127	X_22132127_SNP [dm3] X_22730291_SNP [dm6]	G	T	3.681e^-5	0.535	INTRON CR44997	transposable element FlyBase
X	22129894	X_22129894_SNP [dm3] X_22728058_SNP [dm6]	A	T	3.716e^-5	0.535	INTRON CR44997
3L	13592868	3L_13592868_SNP [dm3] 3L_13599768_SNP [dm6]	C	G	3.724e^-5	0.535	INTRON bru-3 EXON CR45120
X	22123596	X_22123596_SNP [dm3] X_22721760_SNP [dm6]	C	T	3.792e^-5	0.535	INTRON CR44997
3R	18521713	3R_18521713_SNP [dm3] 3R_22695991_SNP [dm6]	G	T	3.848e^-5	0.535	SYNONYMOUS_CODING cd	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18157915	3R_18157915_SNP [dm3] 3R_22332193_SNP [dm6]	G	T	3.849e^-5	0.535	NON_SYNONYMOUS_CODING CG13862 DOWNSTREAM CG33721 & 1 other	TF binding site mE1_TFBS_inv
X	22110686	X_22110686_SNP [dm3] X_22708850_SNP [dm6]	C	G	3.880e^-5	0.535	INTRON CR44997	transposable element FlyBase
X	22123047	X_22123047_SNP [dm3] X_22721211_SNP [dm6]	C	A	3.891e^-5	0.535	INTRON CR44997	transposable element FlyBase
X	22123161	X_22123161_SNP [dm3] X_22721325_SNP [dm6]	C	A	3.940e^-5	0.535	INTRON CR44997	transposable element FlyBase
2L	12546780	2L_12546780_SNP [dm3] 2L_12546780_SNP [dm6]	G	A	3.946e^-5	0.535	UPSTREAM bun INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	22117419	X_22117419_SNP [dm3] X_22715583_SNP [dm6]	A	C	3.953e^-5	0.535	INTRON CR44997
X	22115238	X_22115238_SNP [dm3] X_22713402_SNP [dm6]	A	T	3.966e^-5	0.535	INTRON CR44997	transposable element FlyBase
X	22128271	X_22128271_SNP [dm3] X_22726435_SNP [dm6]	G	A	3.997e^-5	0.535	INTRON CR44997	transposable element FlyBase
3R	18102984	3R_18102984_SNP [dm3] 3R_22277262_SNP [dm6]	T	A	4.058e^-5	0.537	INTRON SKIP
X	22130600	X_22130600_SNP [dm3] X_22728764_SNP [dm6]	C	T	4.113e^-5	0.537	INTRON CR44997
X	22129895	X_22129895_SNP [dm3] X_22728059_SNP [dm6]	A	T	4.119e^-5	0.537	INTRON CR44997
X	22110500	X_22110500_SNP [dm3] X_22708664_SNP [dm6]	A	G	4.146e^-5	0.537	INTRON CR44997
X	22104035	X_22104035_SNP [dm3] X_22702199_SNP [dm6]	T	G	4.148e^-5	0.537	INTRON CR44997	transposable element FlyBase
X	22123619	X_22123619_SNP [dm3] X_22721783_SNP [dm6]	C	T	4.252e^-5	0.541	INTRON CR44997
X	22107323	X_22107323_SNP [dm3] X_22705487_SNP [dm6]	T	C	4.253e^-5	0.541	INTRON CR44997	transposable element FlyBase
X	1624673	X_1624673_SNP [dm3] X_1730640_SNP [dm6]	A	T	4.325e^-5	0.541	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
X	22132287	X_22132287_SNP [dm3] X_22730451_SNP [dm6]	G	T	4.325e^-5	0.541	INTRON CR44997	transposable element FlyBase
2R	11391523	2R_11391523_SNP [dm3] 2R_15504018_SNP [dm6]	G	T	4.328e^-5	0.541	UPSTREAM Ir52c DOWNSTREAM Ir52b INTERGENIC
X	22123306	X_22123306_SNP [dm3] X_22721470_SNP [dm6]	C	G	4.445e^-5	0.552	INTRON CR44997	transposable element FlyBase
3R	14194794	3R_14194794_SNP [dm3] 3R_18369072_SNP [dm6]	T	C	4.519e^-5	0.553	UTR_3_PRIME gl INTRON gl
X	22120589	X_22120589_SNP [dm3] X_22718753_SNP [dm6]	T	A	4.536e^-5	0.553	INTRON CR44997
3L	8600782	3L_8600782_SNP [dm3] 3L_8607682_SNP [dm6]	G	A	4.542e^-5	0.553	INTRON CG6282
X	22133620	X_22133620_SNP [dm3] X_22731784_SNP [dm6]	G	A	4.592e^-5	0.553	INTRON CR44997
2L	18415713	2L_18415713_SNP [dm3] 2L_18415713_SNP [dm6]	T	G	4.629e^-5	0.553	INTERGENIC
2R	16609297	2R_16609297_SNP [dm3] 2R_20721792_SNP [dm6]	G	A	4.661e^-5	0.553	UPSTREAM CR44660 INTRON dpr
2L	1619448	2L_1619448_SNP [dm3] 2L_1619448_SNP [dm6]	T	C	4.663e^-5	0.553	EXON CR44603
3R	18289856	3R_18289856_SNP [dm3] 3R_22464134_SNP [dm6]	T	G	4.711e^-5	0.553	UTR_3_PRIME AP-2mu UPSTREAM CG7054 INTRON AP-2mu	TF binding site mE1_TFBS_cad
X	22131088	X_22131088_SNP [dm3] X_22729252_SNP [dm6]	C	T	4.735e^-5	0.553	INTRON CR44997	transposable element FlyBase
2R	4484333	2R_4484333_SNP [dm3] 2R_8596828_SNP [dm6]	A	T	4.773e^-5	0.553	DOWNSTREAM CG8735 INTERGENIC
X	22131870	X_22131870_SNP [dm3] X_22730034_SNP [dm6]	C	A	4.774e^-5	0.553	INTRON CR44997	transposable element FlyBase
3R	11551544	3R_11551544_SNP [dm3] 3R_15725822_SNP [dm6]	C	T	4.819e^-5	0.555	INTERGENIC
3R	14490477	3R_14490477_SNP [dm3] 3R_18664755_SNP [dm6]	A	C	4.872e^-5	0.557	SYNONYMOUS_CODING Gos28 UPSTREAM CG31231	TF binding site mE1_TFBS_cad
X	22123190	X_22123190_SNP [dm3] X_22721354_SNP [dm6]	T	C	4.935e^-5	0.561	INTRON CR44997	transposable element FlyBase
X	22128168	X_22128168_SNP [dm3] X_22726332_SNP [dm6]	A	T	5.029e^-5	0.561	INTRON CR44997	transposable element FlyBase
X	22131619	X_22131619_SNP [dm3] X_22729783_SNP [dm6]	T	C	5.066e^-5	0.561	INTRON CR44997	transposable element FlyBase
X	22133303	X_22133303_SNP [dm3] X_22731467_SNP [dm6]	G	C	5.098e^-5	0.561	INTRON CR44997
X	22133281	X_22133281_SNP [dm3] X_22731445_SNP [dm6]	A	G	5.123e^-5	0.561	INTRON CR44997
X	22132739	X_22132739_SNP [dm3] X_22730903_SNP [dm6]	A	G	5.126e^-5	0.561	INTRON CR44997	transposable element FlyBase
X	22132680	X_22132680_SNP [dm3] X_22730844_SNP [dm6]	A	G	5.199e^-5	0.561	INTRON CR44997	transposable element FlyBase
3R	4379507	3R_4379507_SNP [dm3] 3R_8553785_SNP [dm6]	G	T	5.230e^-5	0.561	NON_SYNONYMOUS_CODING Or85d
X	22130619	X_22130619_SNP [dm3] X_22728783_SNP [dm6]	C	T	5.273e^-5	0.561	INTRON CR44997
2L	658216	2L_658216_SNP [dm3] 2L_658216_SNP [dm6]	C	A	5.299e^-5	0.561	INTRON ds
X	22128281	X_22128281_SNP [dm3] X_22726445_SNP [dm6]	G	A	5.316e^-5	0.561	INTRON CR44997	transposable element FlyBase
2R	11997172	2R_11997172_SNP [dm3] 2R_16109667_SNP [dm6]	A	G	5.324e^-5	0.561	SYNONYMOUS_CODING Ric UPSTREAM Asph	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	13955844	3R_13955844_SNP [dm3] 3R_18130122_SNP [dm6]	T	A	5.377e^-5	0.561	INTRON sr	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	22110237	X_22110237_SNP [dm3] X_22708401_SNP [dm6]	C	T	5.385e^-5	0.561	INTRON CR44997
2R	6524835	2R_6524835_SNP [dm3] 2R_10637330_SNP [dm6]	G	A	5.392e^-5	0.561	INTRON CG11883
3R	10573381	3R_10573381_SNP [dm3] 3R_14747659_SNP [dm6]	T	A	5.419e^-5	0.561	UPSTREAM smp-30 INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
X	22110619	X_22110619_SNP [dm3] X_22708783_SNP [dm6]	A	G	5.424e^-5	0.561	INTRON CR44997
X	22131297	X_22131297_SNP [dm3] X_22729461_SNP [dm6]	C	T	5.440e^-5	0.561	INTRON CR44997	transposable element FlyBase
X	22120444	X_22120444_INS [dm3] X_22718608_INS [dm6]	T	TGAAATAATATTGGCCACTC...	5.554e^-5	0.569	INTRON CR44997
X	22131854	X_22131854_SNP [dm3] X_22730018_SNP [dm6]	A	T	5.597e^-5	0.57	INTRON CR44997	transposable element FlyBase
X	22113098	X_22113098_SNP [dm3] X_22711262_SNP [dm6]	A	G	5.626e^-5	0.57	INTRON CR44997	transposable element FlyBase
3L	13284028	3L_13284028_INS [dm3] 3L_13290928_INS [dm6]	T	TT	5.680e^-5	0.573	DOWNSTREAM CR43912 EXON CR43912
2R	11397361	2R_11397361_INS [dm3] 2R_15509856_INS [dm6]	G	GG	5.723e^-5	0.574	INTERGENIC
X	14685772	X_14685772_SNP [dm3] X_14791739_SNP [dm6]	G	A	5.825e^-5	0.58	SYNONYMOUS_CODING rut INTRON rut	TF binding site mE1_TFBS_chinmo
2L	12546798	2L_12546798_SNP [dm3] 2L_12546798_SNP [dm6]	C	A	5.866e^-5	0.58	UPSTREAM bun INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	22128218	X_22128218_SNP [dm3] X_22726382_SNP [dm6]	G	T	5.875e^-5	0.58	INTRON CR44997	transposable element FlyBase
3R	14490540	3R_14490540_SNP [dm3] 3R_18664818_SNP [dm6]	A	G	5.998e^-5	0.586	SYNONYMOUS_CODING Gos28 UPSTREAM CG31231	TF binding site mE1_TFBS_cad
3R	23193230	3R_23193230_SNP [dm3] 3R_27367508_SNP [dm6]	T	G	6.022e^-5	0.586	INTRON CG42534 EXON CR43476	TF binding site mE1_TFBS_chinmo
X	22118467	X_22118467_SNP [dm3] X_22716631_SNP [dm6]	A	C	6.025e^-5	0.586	INTRON CR44997
X	22132812	X_22132812_SNP [dm3] X_22730976_SNP [dm6]	C	T	6.090e^-5	0.586	INTRON CR44997	transposable element FlyBase
2L	658193	2L_658193_SNP [dm3] 2L_658193_SNP [dm6]	T	C	6.091e^-5	0.586	INTRON ds
X	22131157	X_22131157_SNP [dm3] X_22729321_SNP [dm6]	A	G	6.131e^-5	0.587	INTRON CR44997	transposable element FlyBase
2L	11583856	2L_11583856_SNP [dm3] 2L_11583856_SNP [dm6]	T	C	6.223e^-5	0.591	INTRON kek2
X	22113355	X_22113355_SNP [dm3] X_22711519_SNP [dm6]	A	G	6.268e^-5	0.591	INTRON CR44997	transposable element FlyBase
X	22107118	X_22107118_SNP [dm3] X_22705282_SNP [dm6]	A	G	6.310e^-5	0.591	INTRON CR44997	transposable element FlyBase
X	22134311	X_22134311_SNP [dm3] X_22732475_SNP [dm6]	T	A	6.326e^-5	0.591	INTRON CR44997
X	22130977	X_22130977_SNP [dm3] X_22729141_SNP [dm6]	A	G	6.337e^-5	0.591	INTRON CR44997
X	22113191	X_22113191_SNP [dm3] X_22711355_SNP [dm6]	T	A	6.417e^-5	0.596	INTRON CR44997	transposable element FlyBase
X	22114845	X_22114845_SNP [dm3] X_22713009_SNP [dm6]	G	A	6.525e^-5	0.598	INTRON CR44997
X	22111260	X_22111260_SNP [dm3] X_22709424_SNP [dm6]	C	A	6.584e^-5	0.598	INTRON CR44997	transposable element FlyBase
2L	13208880	2L_13208880_DEL [dm3] 2L_13208880_DEL [dm6]	TT	T	6.587e^-5	0.598	INTRON Pect
X	22106189	X_22106189_SNP [dm3] X_22704353_SNP [dm6]	C	G	6.631e^-5	0.598	INTRON CR44997	transposable element FlyBase
2R	9116319	2R_9116319_SNP [dm3] 2R_13228814_SNP [dm6]	T	G	6.656e^-5	0.598	NON_SYNONYMOUS_CODING Pex13 DOWNSTREAM Dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	22131002	X_22131002_SNP [dm3] X_22729166_SNP [dm6]	A	T	6.664e^-5	0.598	INTRON CR44997
X	22120613	X_22120613_SNP [dm3] X_22718777_SNP [dm6]	T	C	6.693e^-5	0.598	INTRON CR44997
X	22115549	X_22115549_SNP [dm3] X_22713713_SNP [dm6]	C	T	6.693e^-5	0.598	INTRON CR44997	transposable element FlyBase
2L	14109887	2L_14109887_SNP [dm3] 2L_14109887_SNP [dm6]	C	T	6.806e^-5	0.605	NON_SYNONYMOUS_CODING CG31769 UPSTREAM CG15293
3R	7921735	3R_7921735_SNP [dm3] 3R_12096013_SNP [dm6]	C	T	6.859e^-5	0.607	UTR_5_PRIME dpr17 INTRON dpr17
X	22130964	X_22130964_SNP [dm3] X_22729128_SNP [dm6]	A	C	6.949e^-5	0.612	INTRON CR44997
X	22115056	X_22115056_SNP [dm3] X_22713220_SNP [dm6]	C	T	6.999e^-5	0.613	INTRON CR44997
X	22130013	X_22130013_SNP [dm3] X_22728177_SNP [dm6]	G	A	7.056e^-5	0.614	INTRON CR44997	transposable element FlyBase
3L	761298	3L_761298_SNP [dm3] 3L_761298_SNP [dm6]	T	C	7.086e^-5	0.614	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	17977319	2R_17977319_SNP [dm3] 2R_22089814_SNP [dm6]	C	T	7.108e^-5	0.614	UTR_3_PRIME CG43393 DOWNSTREAM CG44163
X	22123308	X_22123308_DEL [dm3] X_22721472_DEL [dm6]	CACACCCCCCA...	C	7.178e^-5	0.615	INTRON CR44997	transposable element FlyBase
X	22130822	X_22130822_SNP [dm3] X_22728986_SNP [dm6]	T	C	7.219e^-5	0.615	INTRON CR44997
2R	7719160	2R_7719160_SNP [dm3] 2R_11831655_SNP [dm6]	T	A	7.264e^-5	0.615	INTRON Sobp	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	761297	3L_761297_SNP [dm3] 3L_761297_SNP [dm6]	T	C	7.309e^-5	0.615	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	1600531	3L_1600531_SNP [dm3] 3L_1600531_SNP [dm6]	T	C	7.429e^-5	0.615	UTR_3_PRIME CG13917 DOWNSTREAM CG12104 & 1 other
2L	17131737	2L_17131737_SNP [dm3] 2L_17131737_SNP [dm6]	A	G	7.473e^-5	0.615	INTRON beat-IIIa & 1 other
2R	14661605	2R_14661605_INS [dm3] 2R_18774100_INS [dm6]	A	ACACA	7.493e^-5	0.615	UTR_3_PRIME Mctp
3R	24480194	3R_24480194_SNP [dm3] 3R_28654472_SNP [dm6]	A	G	7.538e^-5	0.615	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
X	22133268	X_22133268_SNP [dm3] X_22731432_SNP [dm6]	T	C	7.560e^-5	0.615	INTRON CR44997
2R	14591165	2R_14591165_SNP [dm3] 2R_18703660_SNP [dm6]	A	G	7.578e^-5	0.615	SYNONYMOUS_CODING Sik3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4264266	2L_4264266_SNP [dm3] 2L_4264266_SNP [dm6]	A	C	7.592e^-5	0.615	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	12231269	2L_12231269_INS [dm3] 2L_12231269_INS [dm6]	T	TGT	7.649e^-5	0.615	INTRON aret
X	22135974	X_22135974_SNP [dm3] X_22734138_SNP [dm6]	G	T	7.662e^-5	0.615	INTRON CR44997
2L	17103739	2L_17103739_SNP [dm3] 2L_17103739_SNP [dm6]	C	G	7.664e^-5	0.615	INTERGENIC
X	22120341	X_22120341_SNP [dm3] X_22718505_SNP [dm6]	G	A	7.730e^-5	0.615	INTRON CR44997
X	22110618	X_22110618_SNP [dm3] X_22708782_SNP [dm6]	A	G	7.739e^-5	0.615	INTRON CR44997
3R	18154274	3R_18154274_SNP [dm3] 3R_22328552_SNP [dm6]	A	G	7.754e^-5	0.615	UPSTREAM CG7080 INTERGENIC
X	22126661	X_22126661_DEL [dm3] X_22724825_DEL [dm6]	CCA	GT	7.760e^-5	0.615	INTRON CR44997
X	22132861	X_22132861_SNP [dm3] X_22731025_SNP [dm6]	C	A	7.764e^-5	0.615	INTRON CR44997	transposable element FlyBase
3R	18148552	3R_18148552_SNP [dm3] 3R_22322830_SNP [dm6]	A	G	7.864e^-5	0.615	INTRON CG34377
2L	4264334	2L_4264334_SNP [dm3] 2L_4264334_SNP [dm6]	T	A	7.907e^-5	0.615	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	4264337	2L_4264337_SNP [dm3] 2L_4264337_SNP [dm6]	A	C	7.907e^-5	0.615	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	22110501	X_22110501_SNP [dm3] X_22708665_SNP [dm6]	T	G	7.996e^-5	0.615	INTRON CR44997
3L	777025	3L_777025_SNP [dm3] 3L_777025_SNP [dm6]	A	G	8.051e^-5	0.615	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	22120216	X_22120216_SNP [dm3] X_22718380_SNP [dm6]	C	T	8.097e^-5	0.615	INTRON CR44997
X	22133461	X_22133461_SNP [dm3] X_22731625_SNP [dm6]	C	A	8.109e^-5	0.615	INTRON CR44997
3R	21126986	3R_21126986_SNP [dm3] 3R_25301264_SNP [dm6]	C	G	8.131e^-5	0.615	NON_SYNONYMOUS_CODING CG13659
X	22128290	X_22128290_SNP [dm3] X_22726454_SNP [dm6]	T	A	8.144e^-5	0.615	INTRON CR44997	transposable element FlyBase
3R	7851477	3R_7851477_SNP [dm3] 3R_12025755_SNP [dm6]	T	G	8.151e^-5	0.615	INTERGENIC
X	22105656	X_22105656_SNP [dm3] X_22703820_SNP [dm6]	T	G	8.176e^-5	0.615	INTRON CR44997	transposable element FlyBase
2R	17172776	2R_17172776_SNP [dm3] 2R_21285271_SNP [dm6]	T	C	8.192e^-5	0.615	UTR_3_PRIME MFS16 & 1 other
X	15170953	X_15170953_SNP [dm3] X_15276920_SNP [dm6]	C	G	8.223e^-5	0.615	INTERGENIC
X	19617952	X_19617952_SNP [dm3] X_19723919_SNP [dm6]	C	T	8.271e^-5	0.615	INTRON CG12531
X	18372873	X_18372873_SNP [dm3] X_18478840_SNP [dm6]	A	G	8.286e^-5	0.615	INTRON CG32547
X	22123025	X_22123025_SNP [dm3] X_22721189_SNP [dm6]	T	A	8.346e^-5	0.615	INTRON CR44997	transposable element FlyBase
2L	1870525	2L_1870525_SNP [dm3] 2L_1870525_SNP [dm6]	T	C	8.352e^-5	0.615	NON_SYNONYMOUS_CODING CG7295 INTRON CG31663
3R	18686658	3R_18686658_SNP [dm3] 3R_22860936_SNP [dm6]	T	A	8.355e^-5	0.615	INTERGENIC
3R	20956891	3R_20956891_SNP [dm3] 3R_25131169_SNP [dm6]	A	G	8.371e^-5	0.615	UPSTREAM Bili DOWNSTREAM Clbn INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14194763	3R_14194763_SNP [dm3] 3R_18369041_SNP [dm6]	T	A	8.421e^-5	0.615	UTR_3_PRIME gl INTRON gl
3R	10836713	3R_10836713_SNP [dm3] 3R_15010991_SNP [dm6]	T	A	8.435e^-5	0.615	INTERGENIC
2R	10817256	2R_10817256_SNP [dm3] 2R_14929751_SNP [dm6]	C	A	8.460e^-5	0.615	UTR_3_PRIME CG10253 DOWNSTREAM CG10253
2L	2465309	2L_2465309_SNP [dm3] 2L_2465309_SNP [dm6]	A	T	8.565e^-5	0.618	INTERGENIC	enhancer FlyBase
X	22130708	X_22130708_SNP [dm3] X_22728872_SNP [dm6]	G	A	8.566e^-5	0.618	INTRON CR44997
2L	17128629	2L_17128629_SNP [dm3] 2L_17128629_SNP [dm6]	T	C	8.653e^-5	0.618	INTERGENIC
X	22107136	X_22107136_SNP [dm3] X_22705300_SNP [dm6]	C	A	8.663e^-5	0.618	INTRON CR44997	transposable element FlyBase
X	18372869	X_18372869_SNP [dm3] X_18478836_SNP [dm6]	C	T	8.665e^-5	0.618	INTRON CG32547
2R	18779392	2R_18779392_SNP [dm3] 2R_22891869_SNP [dm6]	A	G	8.718e^-5	0.619	INTRON MED23
2R	8845207	2R_8845207_SNP [dm3] 2R_12957702_SNP [dm6]	A	G	8.790e^-5	0.622	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10034531	2R_10034531_DEL [dm3] 2R_14147026_DEL [dm6]	TT	T	8.817e^-5	0.622	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	22129293	X_22129293_SNP [dm3] X_22727457_SNP [dm6]	T	G	8.854e^-5	0.622	INTRON CR44997	transposable element FlyBase
X	19300183	X_19300183_INS [dm3] X_19406150_INS [dm6]	A	AA	8.952e^-5	0.624	INTRON kek5
X	22130115	X_22130115_SNP [dm3] X_22728279_SNP [dm6]	C	G	9.000e^-5	0.624	INTRON CR44997	transposable element FlyBase
3L	777034	3L_777034_SNP [dm3] 3L_777034_SNP [dm6]	C	G	9.001e^-5	0.624	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	22107583	X_22107583_SNP [dm3] X_22705747_SNP [dm6]	G	C	9.017e^-5	0.624	INTRON CR44997
X	22110445	X_22110445_SNP [dm3] X_22708609_SNP [dm6]	G	C	9.183e^-5	0.63	INTRON CR44997
3R	25074555	3R_25074555_SNP [dm3] 3R_29248833_SNP [dm6]	C	T	9.205e^-5	0.63	UTR_5_PRIME SP1029 INTRON SP1029
2R	16471777	2R_16471777_SNP [dm3] 2R_20584272_SNP [dm6]	A	T	9.261e^-5	0.63	UPSTREAM qsm & 4 others DOWNSTREAM mir-2498 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
X	22114246	X_22114246_SNP [dm3] X_22712410_SNP [dm6]	A	G	9.291e^-5	0.63	INTRON CR44997	transposable element FlyBase
2R	7708013	2R_7708013_SNP [dm3] 2R_11820508_SNP [dm6]	T	C	9.302e^-5	0.63	INTERGENIC
X	272716	X_272716_SNP [dm3] X_378683_SNP [dm6]	C	T	9.354e^-5	0.63	INTRON CG32816	regulatory region REDfly_CRMs
2L	12429705	2L_12429705_SNP [dm3] 2L_12429705_SNP [dm6]	T	C	9.367e^-5	0.63	SYNONYMOUS_CODING CG6388 DOWNSTREAM CG5435	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	9929648	2L_9929648_SNP [dm3] 2L_9929648_SNP [dm6]	C	T	9.386e^-5	0.63	UPSTREAM CG42367 INTRON CG42366	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10652042	3L_10652042_SNP [dm3] 3L_10658942_SNP [dm6]	G	C	9.409e^-5	0.63	INTRON CG32066	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	22110457	X_22110457_SNP [dm3] X_22708621_SNP [dm6]	T	C	9.561e^-5	0.633	INTRON CR44997
3L	2741003	3L_2741003_SNP [dm3] 3L_2741003_SNP [dm6]	C	G	9.571e^-5	0.633	DOWNSTREAM Acp62F INTRON Mrtf
X	18372846	X_18372846_SNP [dm3] X_18478813_SNP [dm6]	C	T	9.594e^-5	0.633	INTRON CG32547
X	22129198	X_22129198_SNP [dm3] X_22727362_SNP [dm6]	G	A	9.634e^-5	0.633	INTRON CR44997	transposable element FlyBase
X	22129292	X_22129292_SNP [dm3] X_22727456_SNP [dm6]	C	T	9.648e^-5	0.633	INTRON CR44997	transposable element FlyBase
3R	18289888	3R_18289888_SNP [dm3] 3R_22464166_SNP [dm6]	C	G	9.660e^-5	0.633	UTR_3_PRIME AP-2mu UPSTREAM CG7054 INTRON AP-2mu	TF binding site mE1_TFBS_cad
3R	23823023	3R_23823023_SNP [dm3] 3R_27997301_SNP [dm6]	C	A	9.767e^-5	0.633	INTERGENIC
2R	16185383	2R_16185383_SNP [dm3] 2R_20297878_SNP [dm6]	T	G	9.794e^-5	0.633	INTERGENIC
3R	22025752	3R_22025752_SNP [dm3] 3R_26200030_SNP [dm6]	G	A	9.806e^-5	0.633	INTRON CR44320	TF binding site BDTNP1_TFBS_twi
X	22107332	X_22107332_SNP [dm3] X_22705496_SNP [dm6]	G	T	9.885e^-5	0.633	INTRON CR44997	transposable element FlyBase
2L	4035769	2L_4035769_SNP [dm3] 2L_4035769_SNP [dm6]	C	T	9.886e^-5	0.633	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
X	22105707	X_22105707_SNP [dm3] X_22703871_SNP [dm6]	C	T	9.924e^-5	0.633	INTRON CR44997	transposable element FlyBase
3L	3494380	3L_3494380_SNP [dm3] 3L_3494380_SNP [dm6]	C	A	9.948e^-5	0.633	INTRON CG42324	TF binding site mE1_TFBS_inv
3L	5741402	3L_5741402_SNP [dm3] 3L_5748302_SNP [dm6]	T	C	9.952e^-5	0.633	UTR_3_PRIME sif
2L	9286725	2L_9286725_SNP [dm3] 2L_9286725_SNP [dm6]	G	A	1.001e^-4	0.633	INTRON Ggamma30A
2R	10631455	2R_10631455_SNP [dm3] 2R_14743950_SNP [dm6]	T	C	1.003e^-4	0.633	SYNONYMOUS_CODING CG12858	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	22106275	X_22106275_SNP [dm3] X_22704439_SNP [dm6]	C	T	1.005e^-4	0.633	INTRON CR44997	transposable element FlyBase
X	22120025	X_22120025_SNP [dm3] X_22718189_SNP [dm6]	G	C	1.005e^-4	0.633	INTRON CR44997
2R	17771839	2R_17771839_DEL [dm3] 2R_21884334_DEL [dm6]	GT	G	1.008e^-4	0.633	INTRON Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10034388	2R_10034388_SNP [dm3] 2R_14146883_SNP [dm6]	A	C	1.018e^-4	0.635	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	14349511	3L_14349511_SNP [dm3] 3L_14356411_SNP [dm6]	A	C	1.019e^-4	0.635	INTRON fz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	22125022	X_22125022_SNP [dm3] X_22723186_SNP [dm6]	C	A	1.041e^-4	0.645	INTRON CR44997	transposable element FlyBase
2L	12576084	2L_12576084_SNP [dm3] 2L_12576084_SNP [dm6]	C	T	1.044e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	22107039	X_22107039_SNP [dm3] X_22705203_SNP [dm6]	A	T	1.047e^-4	0.645	INTRON CR44997	transposable element FlyBase
2R	15480854	2R_15480854_SNP [dm3] 2R_19593349_SNP [dm6]	G	A	1.054e^-4	0.645	UPSTREAM CG16716 INTRON sm
X	22120318	X_22120318_SNP [dm3] X_22718482_SNP [dm6]	A	G	1.055e^-4	0.645	INTRON CR44997
2R	9408355	2R_9408355_SNP [dm3] 2R_13520850_SNP [dm6]	G	A	1.058e^-4	0.645	UPSTREAM CG13331 INTRON Vmat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10184059	2L_10184059_SNP [dm3] 2L_10184059_SNP [dm6]	C	A	1.060e^-4	0.645	INTRON Sur
X	22115204	X_22115204_SNP [dm3] X_22713368_SNP [dm6]	G	T	1.064e^-4	0.646	INTRON CR44997	transposable element FlyBase
3R	16726497	3R_16726497_SNP [dm3] 3R_20900775_SNP [dm6]	G	A	1.080e^-4	0.651	INTERGENIC
3R	16726516	3R_16726516_SNP [dm3] 3R_20900794_SNP [dm6]	C	T	1.080e^-4	0.651	INTERGENIC
X	22107307	X_22107307_SNP [dm3] X_22705471_SNP [dm6]	T	C	1.098e^-4	0.659	INTRON CR44997	transposable element FlyBase
X	22111245	X_22111245_SNP [dm3] X_22709409_SNP [dm6]	G	C	1.101e^-4	0.659	INTRON CR44997	transposable element FlyBase
3L	2991464	3L_2991464_SNP [dm3] 3L_2991464_SNP [dm6]	C	T	1.105e^-4	0.659	INTERGENIC
2R	10034637	2R_10034637_SNP [dm3] 2R_14147132_SNP [dm6]	G	C	1.107e^-4	0.659	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	4483695	3R_4483695_SNP [dm3] 3R_8657973_SNP [dm6]	T	G	1.113e^-4	0.66	INTRON bel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	14349487	3L_14349487_SNP [dm3] 3L_14356387_SNP [dm6]	A	G	1.139e^-4	0.666	INTRON fz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	777794	3L_777794_SNP [dm3] 3L_777794_SNP [dm6]	A	G	1.143e^-4	0.666	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	22129344	X_22129344_SNP [dm3] X_22727508_SNP [dm6]	A	T	1.145e^-4	0.666	INTRON CR44997
3R	22128682	3R_22128682_SNP [dm3] 3R_26302960_SNP [dm6]	T	C	1.151e^-4	0.666	INTERGENIC
3R	18159725	3R_18159725_SNP [dm3] 3R_22334003_SNP [dm6]	G	A	1.152e^-4	0.666	UTR_5_PRIME CG5391 DOWNSTREAM CG5388
X	22124697	X_22124697_SNP [dm3] X_22722861_SNP [dm6]	G	A	1.157e^-4	0.666	INTRON CR44997	transposable element FlyBase
2L	11421186	2L_11421186_SNP [dm3] 2L_11421186_SNP [dm6]	C	A	1.163e^-4	0.666	INTERGENIC
2L	12576058	2L_12576058_SNP [dm3] 2L_12576058_SNP [dm6]	C	A	1.169e^-4	0.666	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	22132693	X_22132693_SNP [dm3] X_22730857_SNP [dm6]	C	A	1.171e^-4	0.666	INTRON CR44997	transposable element FlyBase
X	22126115	X_22126115_SNP [dm3] X_22724279_SNP [dm6]	C	T	1.183e^-4	0.666	INTRON CR44997	transposable element FlyBase
2R	11306749	2R_11306749_SNP [dm3] 2R_15419244_SNP [dm6]	C	A	1.183e^-4	0.666	INTRON CG43729
3R	18157545	3R_18157545_SNP [dm3] 3R_22331823_SNP [dm6]	T	G	1.183e^-4	0.666	UPSTREAM CG13862 DOWNSTREAM CG33721 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	22123373	X_22123373_SNP [dm3] X_22721537_SNP [dm6]	A	T	1.189e^-4	0.666	INTRON CR44997	transposable element FlyBase
X	19300186	X_19300186_SNP [dm3] X_19406153_SNP [dm6]	A	G	1.196e^-4	0.666	INTRON kek5
2L	6765599	2L_6765599_SNP [dm3] 2L_6765599_SNP [dm6]	T	A	1.199e^-4	0.666	NON_SYNONYMOUS_CODING CG11321
X	22151297	X_22151297_INS [dm3] X_22749461_INS [dm6]	T	AGTA	1.206e^-4	0.666	INTRON CR44997
3R	18102687	3R_18102687_SNP [dm3] 3R_22276965_SNP [dm6]	G	T	1.206e^-4	0.666	INTRON SKIP
2R	10633921	2R_10633921_SNP [dm3] 2R_14746416_SNP [dm6]	C	T	1.209e^-4	0.666	UTR_3_PRIME Dro UPSTREAM AttA DOWNSTREAM Dro
3L	2609146	3L_2609146_SNP [dm3] 3L_2609146_SNP [dm6]	C	T	1.211e^-4	0.666	DOWNSTREAM Pxn INTRON Pxn
X	22114964	X_22114964_SNP [dm3] X_22713128_SNP [dm6]	A	T	1.214e^-4	0.666	INTRON CR44997
X	9301551	X_9301551_SNP [dm3] X_9407518_SNP [dm6]	A	T	1.222e^-4	0.666	INTRON mgl
X	22124903	X_22124903_SNP [dm3] X_22723067_SNP [dm6]	G	A	1.224e^-4	0.666	INTRON CR44997	transposable element FlyBase
3R	10837310	3R_10837310_SNP [dm3] 3R_15011588_SNP [dm6]	G	A	1.225e^-4	0.666	INTERGENIC
3R	16795267	3R_16795267_SNP [dm3] 3R_20969545_SNP [dm6]	A	T	1.227e^-4	0.666	INTRON Atpalpha
X	22144038	X_22144038_SNP [dm3] X_22742202_SNP [dm6]	A	G	1.227e^-4	0.666	INTRON CR44997	transposable element FlyBase
2R	13682478	2R_13682478_SNP [dm3] 2R_17794973_SNP [dm6]	C	A	1.227e^-4	0.666	INTRON Dhit	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	995096	2R_995096_SNP [dm3] 2R_5107591_SNP [dm6]	A	G	1.227e^-4	0.666	INTERGENIC	transposable element FlyBase
3L	834070	3L_834070_SNP [dm3] 3L_834070_SNP [dm6]	T	C	1.231e^-4	0.666	UPSTREAM CG42553 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	17938424	2L_17938424_SNP [dm3] 2L_17938424_SNP [dm6]	G	A	1.233e^-4	0.666	DOWNSTREAM CR44399 INTERGENIC
3L	8437934	3L_8437934_INS [dm3] 3L_8444834_INS [dm6]	T	TTCCCCAAGCT...	1.236e^-4	0.666	INTRON CG6983	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	22123034	X_22123034_SNP [dm3] X_22721198_SNP [dm6]	C	T	1.239e^-4	0.666	INTRON CR44997	transposable element FlyBase
2L	5017579	2L_5017579_SNP [dm3] 2L_5017579_SNP [dm6]	T	G	1.240e^-4	0.666	SYNONYMOUS_CODING vkg	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18161192	3R_18161192_SNP [dm3] 3R_22335470_SNP [dm6]	G	T	1.246e^-4	0.666	INTRON CG5388
3L	6538264	3L_6538264_SNP [dm3] 3L_6545164_SNP [dm6]	A	G	1.249e^-4	0.666	SYNONYMOUS_CODING sfl	TF binding site mE1_TFBS_sens
2L	14080562	2L_14080562_SNP [dm3] 2L_14080562_SNP [dm6]	A	G	1.251e^-4	0.666	SYNONYMOUS_CODING nAChRalpha5
2R	9124588	2R_9124588_SNP [dm3] 2R_13237083_SNP [dm6]	T	G	1.257e^-4	0.666	DOWNSTREAM CG4679 & 1 other INTERGENIC
X	22107273	X_22107273_SNP [dm3] X_22705437_SNP [dm6]	A	G	1.257e^-4	0.666	INTRON CR44997	transposable element FlyBase
X	22133352	X_22133352_SNP [dm3] X_22731516_SNP [dm6]	G	T	1.258e^-4	0.666	INTRON CR44997
X	22134138	X_22134138_SNP [dm3] X_22732302_SNP [dm6]	G	T	1.260e^-4	0.666	INTRON CR44997	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	22107085	X_22107085_SNP [dm3] X_22705249_SNP [dm6]	A	T	1.265e^-4	0.666	INTRON CR44997	transposable element FlyBase
X	22115680	X_22115680_SNP [dm3] X_22713844_SNP [dm6]	A	G	1.271e^-4	0.667	INTRON CR44997
X	22114606	X_22114606_SNP [dm3] X_22712770_SNP [dm6]	A	C	1.272e^-4	0.667	INTRON CR44997
3L	3430790	3L_3430790_SNP [dm3] 3L_3430790_SNP [dm6]	C	G	1.288e^-4	0.668	INTRON eIF5B
X	18372759	X_18372759_SNP [dm3] X_18478726_SNP [dm6]	G	A	1.295e^-4	0.668	INTRON CG32547
3R	7316245	3R_7316245_INS [dm3] 3R_11490523_INS [dm6]	A	ATTAT	1.296e^-4	0.668	INTERGENIC
2L	12429606	2L_12429606_SNP [dm3] 2L_12429606_SNP [dm6]	G	C	1.296e^-4	0.668	SYNONYMOUS_CODING CG6388 DOWNSTREAM CG5435	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	22134443	X_22134443_SNP [dm3] X_22732607_SNP [dm6]	C	T	1.298e^-4	0.668	INTRON CR44997
2L	4340835	2L_4340835_DEL [dm3] 2L_4340835_DEL [dm6]	CCCACACG	C	1.299e^-4	0.668	INTRON Atet
X	22133459	X_22133459_SNP [dm3] X_22731623_SNP [dm6]	A	G	1.300e^-4	0.668	INTRON CR44997
X	22064224	X_22064224_SNP [dm3] X_22662388_SNP [dm6]	G	T	1.308e^-4	0.669	INTRON CR44997
3R	16726496	3R_16726496_SNP [dm3] 3R_20900774_SNP [dm6]	C	T	1.311e^-4	0.669	INTERGENIC
2L	9253255	2L_9253255_SNP [dm3] 2L_9253255_SNP [dm6]	A	G	1.312e^-4	0.669	UPSTREAM borr DOWNSTREAM lectin-30A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	14310608	3L_14310608_SNP [dm3] 3L_14317508_SNP [dm6]	G	A	1.324e^-4	0.669	INTRON fz
2L	12942792	2L_12942792_SNP [dm3] 2L_12942792_SNP [dm6]	A	T	1.331e^-4	0.669	INTERGENIC
3L	5470428	3L_5470428_SNP [dm3] 3L_5477328_SNP [dm6]	G	A	1.333e^-4	0.669	INTERGENIC	TF binding site mE1_TFBS_HSA
X	22118374	X_22118374_SNP [dm3] X_22716538_SNP [dm6]	T	C	1.333e^-4	0.669	INTRON CR44997
3R	10923105	3R_10923105_SNP [dm3] 3R_15097383_SNP [dm6]	G	T	1.339e^-4	0.669	UTR_3_PRIME CG42788
X	22112959	X_22112959_SNP [dm3] X_22711123_SNP [dm6]	A	T	1.348e^-4	0.669	INTRON CR44997	transposable element FlyBase
3L	14669864	3L_14669864_SNP [dm3] 3L_14676764_SNP [dm6]	T	C	1.349e^-4	0.669	INTRON ome & 1 other
3L	14669853	3L_14669853_SNP [dm3] 3L_14676753_SNP [dm6]	T	A	1.351e^-4	0.669	INTRON ome & 1 other
3L	3365043	3L_3365043_SNP [dm3] 3L_3365043_SNP [dm6]	G	A	1.354e^-4	0.669	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	22133454	X_22133454_SNP [dm3] X_22731618_SNP [dm6]	C	T	1.355e^-4	0.669	INTRON CR44997
3L	2079085	3L_2079085_SNP [dm3] 3L_2079085_SNP [dm6]	C	A	1.360e^-4	0.669	INTRON sls
X	22134949	X_22134949_SNP [dm3] X_22733113_SNP [dm6]	T	C	1.371e^-4	0.669	INTRON CR44997
X	22129415	X_22129415_SNP [dm3] X_22727579_SNP [dm6]	T	C	1.372e^-4	0.669	INTRON CR44997
2R	10913626	2R_10913626_SNP [dm3] 2R_15026121_SNP [dm6]	C	A	1.374e^-4	0.669	DOWNSTREAM CR45256 INTRON hbs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	22111442	X_22111442_SNP [dm3] X_22709606_SNP [dm6]	G	A	1.380e^-4	0.669	INTRON CR44997	transposable element FlyBase
2R	10736594	2R_10736594_SNP [dm3] 2R_14849089_SNP [dm6]	C	G	1.380e^-4	0.669	SYNONYMOUS_CODING SMC2 UPSTREAM CG10209	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	22129196	X_22129196_SNP [dm3] X_22727360_SNP [dm6]	T	C	1.386e^-4	0.669	INTRON CR44997	transposable element FlyBase
3L	5470430	3L_5470430_SNP [dm3] 3L_5477330_SNP [dm6]	C	T	1.393e^-4	0.669	INTERGENIC	TF binding site mE1_TFBS_HSA
X	22107047	X_22107047_SNP [dm3] X_22705211_SNP [dm6]	C	T	1.397e^-4	0.669	INTRON CR44997	transposable element FlyBase
X	22129416	X_22129416_SNP [dm3] X_22727580_SNP [dm6]	T	A	1.398e^-4	0.669	INTRON CR44997
2L	2111337	2L_2111337_SNP [dm3] 2L_2111337_SNP [dm6]	C	T	1.402e^-4	0.669	INTERGENIC
2L	4264255	2L_4264255_SNP [dm3] 2L_4264255_SNP [dm6]	G	A	1.403e^-4	0.669	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	8138794	3L_8138794_SNP [dm3] 3L_8145694_SNP [dm6]	T	A	1.403e^-4	0.669	INTRON CG13676
3L	9701465	3L_9701465_SNP [dm3] 3L_9708365_SNP [dm6]	G	T	1.403e^-4	0.669	NON_SYNONYMOUS_CODING CG16711	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10634973	2R_10634973_SNP [dm3] 2R_14747468_SNP [dm6]	C	A	1.407e^-4	0.669	SYNONYMOUS_CODING AttA DOWNSTREAM Dro
2R	17543863	2R_17543863_SNP [dm3] 2R_21656358_SNP [dm6]	T	C	1.415e^-4	0.669	INTRON CG10082 EXON CR43786	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18295322	3R_18295322_SNP [dm3] 3R_22469600_SNP [dm6]	C	T	1.426e^-4	0.669	START_GAINED Nrx-1 UTR_5_PRIME Nrx-1 INTRON Nrx-1
3R	16726331	3R_16726331_SNP [dm3] 3R_20900609_SNP [dm6]	T	C	1.426e^-4	0.669	INTERGENIC
3R	18956816	3R_18956816_SNP [dm3] 3R_23131094_SNP [dm6]	C	T	1.428e^-4	0.669	INTRON hh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2111329	2L_2111329_INS [dm3] 2L_2111329_INS [dm6]	A	AA	1.428e^-4	0.669	INTERGENIC
X	22110529	X_22110529_SNP [dm3] X_22708693_SNP [dm6]	T	A	1.432e^-4	0.669	INTRON CR44997
2L	4788250	2L_4788250_SNP [dm3] 2L_4788250_SNP [dm6]	T	C	1.433e^-4	0.669	INTRON CG15630
3R	18157561	3R_18157561_SNP [dm3] 3R_22331839_SNP [dm6]	A	C	1.435e^-4	0.669	UPSTREAM CG13862 DOWNSTREAM CG33721 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	7126836	X_7126836_SNP [dm3] X_7232803_SNP [dm6]	A	G	1.442e^-4	0.669	INTRON CR44357 & 1 other	TF binding site mE1_TFBS_chinmo
X	7129488	X_7129488_DEL [dm3] X_7235455_DEL [dm6]	ATT	A	1.444e^-4	0.669	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
X	7129491	X_7129491_DEL [dm3] X_7235458_DEL [dm6]	GA	G	1.444e^-4	0.669	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	17771837	2R_17771837_SNP [dm3] 2R_21884332_SNP [dm6]	T	A	1.445e^-4	0.669	INTRON Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7126863	X_7126863_SNP [dm3] X_7232830_SNP [dm6]	C	G	1.453e^-4	0.671	INTRON CR44357 & 1 other	TF binding site mE1_TFBS_chinmo
X	22107333	X_22107333_SNP [dm3] X_22705497_SNP [dm6]	G	A	1.470e^-4	0.671	INTRON CR44997	transposable element FlyBase
X	9664745	X_9664745_SNP [dm3] X_9770712_SNP [dm6]	C	T	1.472e^-4	0.671	INTERGENIC
X	22113411	X_22113411_SNP [dm3] X_22711575_SNP [dm6]	T	C	1.472e^-4	0.671	INTRON CR44997	transposable element FlyBase
3R	10836683	3R_10836683_SNP [dm3] 3R_15010961_SNP [dm6]	A	C	1.473e^-4	0.671	INTERGENIC
X	22105864	X_22105864_SNP [dm3] X_22704028_SNP [dm6]	A	C	1.474e^-4	0.671	INTRON CR44997	transposable element FlyBase
X	1616364	X_1616364_SNP [dm3] X_1722331_SNP [dm6]	C	G	1.478e^-4	0.671	INTERGENIC
X	22107574	X_22107574_SNP [dm3] X_22705738_SNP [dm6]	A	T	1.479e^-4	0.671	INTRON CR44997	transposable element FlyBase
3R	18159564	3R_18159564_SNP [dm3] 3R_22333842_SNP [dm6]	T	A	1.483e^-4	0.671	DOWNSTREAM CG5388 INTRON CG5391
X	22120607	X_22120607_DEL [dm3] X_22718771_DEL [dm6]	TT	T	1.485e^-4	0.671	INTRON CR44997
3R	26647139	3R_26647139_SNP [dm3] 3R_30821417_SNP [dm6]	G	T	1.494e^-4	0.672	INTRON cindr	TF binding site BDTNP1_TFBS_z
2L	17330285	2L_17330285_SNP [dm3] 2L_17330285_SNP [dm6]	A	T	1.500e^-4	0.672	INTERGENIC
3L	12056149	3L_12056149_SNP [dm3] 3L_12063049_SNP [dm6]	T	A	1.502e^-4	0.672	INTRON rols	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	15401307	2R_15401307_SNP [dm3] 2R_19513802_SNP [dm6]	G	T	1.503e^-4	0.672	UPSTREAM Ir56d INTERGENIC
2R	4487682	2R_4487682_SNP [dm3] 2R_8600177_SNP [dm6]	G	A	1.508e^-4	0.672	UPSTREAM rgr & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2R	6496740	2R_6496740_INS [dm3] 2R_10609235_INS [dm6]	A	TT	1.508e^-4	0.672	INTRON psq
2L	5455372	2L_5455372_SNP [dm3] 2L_5455372_SNP [dm6]	T	C	1.528e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4941857	2L_4941857_SNP [dm3] 2L_4941857_SNP [dm6]	A	G	1.534e^-4	0.68	UPSTREAM CG14044 DOWNSTREAM Sgs1 INTERGENIC
X	19617955	X_19617955_SNP [dm3] X_19723922_SNP [dm6]	C	A	1.543e^-4	0.683	INTRON CG12531
X	22105861	X_22105861_SNP [dm3] X_22704025_SNP [dm6]	T	C	1.556e^-4	0.684	INTRON CR44997	transposable element FlyBase
2L	16750980	2L_16750980_SNP [dm3] 2L_16750980_SNP [dm6]	C	T	1.556e^-4	0.684	UTR_3_PRIME CG17912	TF binding site mE1_TFBS_HSA
3L	2550345	3L_2550345_SNP [dm3] 3L_2550345_SNP [dm6]	G	A	1.556e^-4	0.684	INTRON Spn
2L	4340871	2L_4340871_SNP [dm3] 2L_4340871_SNP [dm6]	A	G	1.561e^-4	0.684	INTRON Atet
3R	18156805	3R_18156805_SNP [dm3] 3R_22331083_SNP [dm6]	A	G	1.565e^-4	0.684	SYNONYMOUS_CODING CG33721 UPSTREAM CG13862 DOWNSTREAM CG7080
3L	851478	3L_851478_SNP [dm3] 3L_851478_SNP [dm6]	C	A	1.591e^-4	0.694	NON_SYNONYMOUS_CODING CG13890 DOWNSTREAM CG13889	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	18405953	X_18405953_SNP [dm3] X_18511920_SNP [dm6]	C	T	1.598e^-4	0.695	DOWNSTREAM CG6470 INTRON Ggt-1	TF binding site BDTNP1_TFBS_dl
2L	14975101	2L_14975101_SNP [dm3] 2L_14975101_SNP [dm6]	T	A	1.602e^-4	0.695	DOWNSTREAM mol & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6613039	3L_6613039_SNP [dm3] 3L_6619939_SNP [dm6]	G	A	1.611e^-4	0.695	DOWNSTREAM CG8398 INTERGENIC
3L	13322647	3L_13322647_INS [dm3] 3L_13329547_INS [dm6]	T	TT	1.613e^-4	0.695	UTR_3_PRIME CG14113
3L	15819400	3L_15819400_SNP [dm3] 3L_15826300_SNP [dm6]	A	T	1.618e^-4	0.695	UTR_5_PRIME Dcp2 UPSTREAM dbo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	1215911	3L_1215911_SNP [dm3] 3L_1215911_SNP [dm6]	G	A	1.626e^-4	0.695	INTRON mwh	TF binding site mE1_TFBS_inv
X	22110263	X_22110263_SNP [dm3] X_22708427_SNP [dm6]	G	T	1.632e^-4	0.695	INTRON CR44997
X	7329536	X_7329536_SNP [dm3] X_7435503_SNP [dm6]	T	C	1.632e^-4	0.695	INTERGENIC
2L	9255152	2L_9255152_SNP [dm3] 2L_9255152_SNP [dm6]	T	G	1.635e^-4	0.695	UPSTREAM lectin-30A INTERGENIC
X	7329519	X_7329519_SNP [dm3] X_7435486_SNP [dm6]	A	G	1.645e^-4	0.695	INTERGENIC
2L	6765532	2L_6765532_SNP [dm3] 2L_6765532_SNP [dm6]	G	A	1.645e^-4	0.695	NON_SYNONYMOUS_CODING CG11321
2L	9929657	2L_9929657_SNP [dm3] 2L_9929657_SNP [dm6]	C	A	1.646e^-4	0.695	UPSTREAM CG42367 INTRON CG42366	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13941314	3R_13941314_SNP [dm3] 3R_18115592_SNP [dm6]	G	A	1.652e^-4	0.695	INTRON sr
X	7130552	X_7130552_SNP [dm3] X_7236519_SNP [dm6]	C	A	1.653e^-4	0.695	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2347866	X_2347866_SNP [dm3] X_2453833_SNP [dm6]	T	G	1.659e^-4	0.695	INTRON boi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6613109	3L_6613109_INS [dm3] 3L_6620009_INS [dm6]	T	TTTATTATTTATTATTATTT...	1.668e^-4	0.695	DOWNSTREAM CG8398 INTERGENIC
3R	15191335	3R_15191335_SNP [dm3] 3R_19365613_SNP [dm6]	G	T	1.670e^-4	0.695	INTERGENIC
X	5230155	X_5230155_INS [dm3] X_5336122_INS [dm6]	T	TAT	1.671e^-4	0.695	INTERGENIC
2R	10632511	2R_10632511_SNP [dm3] 2R_14745006_SNP [dm6]	C	G	1.672e^-4	0.695	UPSTREAM Dro INTRON CG12858
X	22107686	X_22107686_SNP [dm3] X_22705850_SNP [dm6]	T	G	1.673e^-4	0.695	INTRON CR44997
X	22133244	X_22133244_SNP [dm3] X_22731408_SNP [dm6]	T	A	1.676e^-4	0.695	INTRON CR44997
2L	10011711	2L_10011711_SNP [dm3] 2L_10011711_SNP [dm6]	C	A	1.676e^-4	0.695	SYNONYMOUS_CODING Trp1
3R	1821530	3R_1821530_SNP [dm3] 3R_5995808_SNP [dm6]	T	C	1.680e^-4	0.695	EXON CR44928
3L	5401050	3L_5401050_SNP [dm3] 3L_5407950_SNP [dm6]	A	G	1.683e^-4	0.695	INTERGENIC
X	22126595	X_22126595_SNP [dm3] X_22724759_SNP [dm6]	A	G	1.688e^-4	0.696	INTRON CR44997
X	3320827	X_3320827_SNP [dm3] X_3426794_SNP [dm6]	A	T	1.691e^-4	0.696	DOWNSTREAM tRNA:CR32493 INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl
X	22123717	X_22123717_SNP [dm3] X_22721881_SNP [dm6]	G	A	1.702e^-4	0.699	INTRON CR44997
2L	9243226	2L_9243226_SNP [dm3] 2L_9243226_SNP [dm6]	G	A	1.713e^-4	0.7	INTRON tai	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2399333	2L_2399333_SNP [dm3] 2L_2399333_SNP [dm6]	T	A	1.715e^-4	0.7	UPSTREAM VGlut INTRON VGlut
3L	8419496	3L_8419496_SNP [dm3] 3L_8426396_SNP [dm6]	C	A	1.716e^-4	0.7	INTRON Cbl
3R	18157029	3R_18157029_SNP [dm3] 3R_22331307_SNP [dm6]	A	G	1.725e^-4	0.701	SYNONYMOUS_CODING CG33721 UPSTREAM CG13862 DOWNSTREAM CG7080
2L	7454017	2L_7454017_SNP [dm3] 2L_7454017_SNP [dm6]	A	G	1.728e^-4	0.701	SYNONYMOUS_CODING Gr28a DOWNSTREAM Gr28b
2R	16787070	2R_16787070_SNP [dm3] 2R_20899565_SNP [dm6]	A	G	1.730e^-4	0.701	DOWNSTREAM CR43160 INTRON otp	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3R	22122966	3R_22122966_SNP [dm3] 3R_26297244_SNP [dm6]	C	T	1.739e^-4	0.701	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2R	10833199	2R_10833199_SNP [dm3] 2R_14945694_SNP [dm6]	C	T	1.740e^-4	0.701	UTR_3_PRIME aPKC DOWNSTREAM aPKC INTRON aPKC
2R	17771824	2R_17771824_SNP [dm3] 2R_21884319_SNP [dm6]	A	G	1.740e^-4	0.701	INTRON Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3041932	X_3041932_SNP [dm3] X_3147899_SNP [dm6]	C	A	1.747e^-4	0.702	INTRON N	TF binding site BDTNP1_TFBS_dl
X	22124880	X_22124880_SNP [dm3] X_22723044_SNP [dm6]	C	G	1.764e^-4	0.702	INTRON CR44997	transposable element FlyBase
X	20473703	X_20473703_SNP [dm3] X_20602676_SNP [dm6]	G	T	1.765e^-4	0.702	INTRON RunxA
X	22124951	X_22124951_INS [dm3] X_22723115_INS [dm6]	A	AG	1.770e^-4	0.702	INTRON CR44997	transposable element FlyBase
2R	19677212	2R_19677212_DEL [dm3] 2R_23789689_DEL [dm6]	GCAATATCTACCTTTATCGC...	G	1.773e^-4	0.702	DOWNSTREAM CG15800 INTRON CG9850
2R	10026039	2R_10026039_SNP [dm3] 2R_14138534_SNP [dm6]	G	T	1.775e^-4	0.702	INTRON Prosap
3L	7277250	3L_7277250_INS [dm3] 3L_7284150_INS [dm6]	A	AAG	1.783e^-4	0.702	INTRON unc-13-4A
X	22105868	X_22105868_SNP [dm3] X_22704032_SNP [dm6]	T	G	1.783e^-4	0.702	INTRON CR44997	transposable element FlyBase
X	22115552	X_22115552_SNP [dm3] X_22713716_SNP [dm6]	C	T	1.784e^-4	0.702	INTRON CR44997	transposable element FlyBase
X	22133392	X_22133392_SNP [dm3] X_22731556_SNP [dm6]	A	C	1.790e^-4	0.702	INTRON CR44997
3R	10836681	3R_10836681_SNP [dm3] 3R_15010959_SNP [dm6]	A	T	1.794e^-4	0.702	INTERGENIC
3R	10836720	3R_10836720_SNP [dm3] 3R_15010998_SNP [dm6]	T	G	1.794e^-4	0.702	INTERGENIC
X	12704253	X_12704253_SNP [dm3] X_12810220_SNP [dm6]	A	C	1.799e^-4	0.702	INTRON Pde9
3R	26191841	3R_26191841_DEL [dm3] 3R_30366119_DEL [dm6]	CCATC	C	1.806e^-4	0.702	UTR_3_PRIME hdc
2R	11369347	2R_11369347_SNP [dm3] 2R_15481842_SNP [dm6]	C	A	1.808e^-4	0.702	INTRON CG8180	TF binding site BDTNP1_TFBS_dl
2L	9509979	2L_9509979_SNP [dm3] 2L_9509979_SNP [dm6]	G	T	1.809e^-4	0.702	INTRON CG33298
3R	18154526	3R_18154526_INS [dm3] 3R_22328804_INS [dm6]	T	TGAAGGCCTG	1.809e^-4	0.702	UPSTREAM CG7080 INTERGENIC
2L	9826048	2L_9826048_SNP [dm3] 2L_9826048_SNP [dm6]	G	T	1.818e^-4	0.702	INTRON nAChRalpha6
2R	10583650	2R_10583650_SNP [dm3] 2R_14696145_SNP [dm6]	T	A	1.826e^-4	0.702	INTRON mspo
3R	10837321	3R_10837321_SNP [dm3] 3R_15011599_SNP [dm6]	G	C	1.828e^-4	0.702	INTERGENIC
X	22129343	X_22129343_SNP [dm3] X_22727507_SNP [dm6]	T	A	1.829e^-4	0.702	INTRON CR44997
2L	9253529	2L_9253529_SNP [dm3] 2L_9253529_SNP [dm6]	C	A	1.832e^-4	0.702	UPSTREAM borr DOWNSTREAM lectin-30A INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	13311774	3L_13311774_SNP [dm3] 3L_13318674_SNP [dm6]	T	C	1.833e^-4	0.702	INTERGENIC
3L	17220479	3L_17220479_SNP [dm3] 3L_17227379_SNP [dm6]	A	G	1.842e^-4	0.702	INTRON Rbp6
3R	25312065	3R_25312065_SNP [dm3] 3R_29486343_SNP [dm6]	G	T	1.843e^-4	0.702	UTR_3_PRIME Ptp99A DOWNSTREAM CG2321 INTRON CG2321
X	22129194	X_22129194_SNP [dm3] X_22727358_SNP [dm6]	T	C	1.846e^-4	0.702	INTRON CR44997	transposable element FlyBase
X	22107703	X_22107703_SNP [dm3] X_22705867_SNP [dm6]	G	C	1.846e^-4	0.702	INTRON CR44997
3R	25498622	3R_25498622_SNP [dm3] 3R_29672900_SNP [dm6]	A	G	1.856e^-4	0.704	NON_SYNONYMOUS_CODING ppk19 DOWNSTREAM Obp99a	TF binding site mE1_TFBS_sens
3L	13284002	3L_13284002_DEL [dm3] 3L_13290902_DEL [dm6]	CC	C	1.858e^-4	0.704	DOWNSTREAM CR43912 EXON CR43912
X	22115201	X_22115201_SNP [dm3] X_22713365_SNP [dm6]	A	G	1.865e^-4	0.704	INTRON CR44997	transposable element FlyBase
2L	6765494	2L_6765494_SNP [dm3] 2L_6765494_SNP [dm6]	T	C	1.869e^-4	0.704	SYNONYMOUS_CODING CG11321
X	22128153	X_22128153_SNP [dm3] X_22726317_SNP [dm6]	C	A	1.872e^-4	0.704	INTRON CR44997	transposable element FlyBase
3L	1131780	3L_1131780_SNP [dm3] 3L_1131780_SNP [dm6]	A	C	1.874e^-4	0.704	INTERGENIC	regulatory region REDfly_CRMs
X	22132750	X_22132750_SNP [dm3] X_22730914_SNP [dm6]	A	T	1.878e^-4	0.704	INTRON CR44997	transposable element FlyBase
X	22136439	X_22136439_SNP [dm3] X_22734603_SNP [dm6]	G	T	1.880e^-4	0.704	INTRON CR44997
3R	14042293	3R_14042293_SNP [dm3] 3R_18216571_SNP [dm6]	T	G	1.888e^-4	0.704	SYNONYMOUS_CODING CG14314	TF binding site mE1_TFBS_cad
X	7008664	X_7008664_SNP [dm3] X_7114631_SNP [dm6]	C	G	1.894e^-4	0.704	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	18430856	3R_18430856_SNP [dm3] 3R_22605134_SNP [dm6]	A	C	1.898e^-4	0.704	INTRON Efa6
X	22129210	X_22129210_SNP [dm3] X_22727374_SNP [dm6]	A	G	1.900e^-4	0.704	INTRON CR44997	transposable element FlyBase
3L	13322595	3L_13322595_SNP [dm3] 3L_13329495_SNP [dm6]	A	C	1.906e^-4	0.704	NON_SYNONYMOUS_CODING CG14113
2R	17544137	2R_17544137_SNP [dm3] 2R_21656632_SNP [dm6]	T	C	1.906e^-4	0.704	SYNONYMOUS_CODING CG10082 EXON CR43786	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	22133397	X_22133397_SNP [dm3] X_22731561_SNP [dm6]	G	A	1.907e^-4	0.704	INTRON CR44997
3L	12941492	3L_12941492_SNP [dm3] 3L_12948392_SNP [dm6]	G	T	1.910e^-4	0.704	INTERGENIC	TF binding site mE1_TFBS_inv
2R	16890288	2R_16890288_SNP [dm3] 2R_21002783_SNP [dm6]	A	G	1.921e^-4	0.705	NON_SYNONYMOUS_CODING CG10543	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1570774	3L_1570774_DEL [dm3] 3L_1570774_DEL [dm6]	TGTAGGT	T	1.922e^-4	0.705	INTRON CG12004	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	1110621	3L_1110621_DEL [dm3] 3L_1110621_DEL [dm6]	GCAG	G	1.932e^-4	0.707	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	4941847	2L_4941847_SNP [dm3] 2L_4941847_SNP [dm6]	T	C	1.947e^-4	0.707	UPSTREAM CG14044 DOWNSTREAM Sgs1 INTERGENIC
2R	19172586	2R_19172586_SNP [dm3] 2R_23285063_SNP [dm6]	A	G	1.956e^-4	0.707	UTR_3_PRIME CG13541 UPSTREAM CG3124	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8989513	2L_8989513_SNP [dm3] 2L_8989513_SNP [dm6]	G	C	1.958e^-4	0.707	UTR_5_PRIME rost UPSTREAM rost
2R	15203787	2R_15203787_SNP [dm3] 2R_19316282_SNP [dm6]	T	A	1.965e^-4	0.707	INTRON Rgk1
3R	907147	3R_907147_SNP [dm3] 3R_5081425_SNP [dm6]	T	C	1.967e^-4	0.707	UTR_3_PRIME corto
2L	8176819	2L_8176819_SNP [dm3] 2L_8176819_SNP [dm6]	A	T	1.969e^-4	0.707	INTRON Piezo
2L	8176820	2L_8176820_SNP [dm3] 2L_8176820_SNP [dm6]	C	T	1.969e^-4	0.707	INTRON Piezo
3R	5684127	3R_5684127_INS [dm3] 3R_9858405_INS [dm6]	A	ACTGATCGTGTAA...	1.976e^-4	0.707	INTRON Teh1
2L	12546712	2L_12546712_SNP [dm3] 2L_12546712_SNP [dm6]	T	A	1.993e^-4	0.707	UPSTREAM bun INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5389199	2L_5389199_SNP [dm3] 2L_5389199_SNP [dm6]	G	A	1.993e^-4	0.707	DOWNSTREAM CR44745 INTERGENIC
X	22107475	X_22107475_SNP [dm3] X_22705639_SNP [dm6]	C	T	1.995e^-4	0.707	INTRON CR44997	transposable element FlyBase
3L	16759510	3L_16759510_SNP [dm3] 3L_16766410_SNP [dm6]	G	C	1.996e^-4	0.707	UTR_5_PRIME Nrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	22134961	X_22134961_SNP [dm3] X_22733125_SNP [dm6]	A	G	1.996e^-4	0.707	INTRON CR44997
3R	13941340	3R_13941340_SNP [dm3] 3R_18115618_SNP [dm6]	G	T	1.998e^-4	0.707	INTRON sr
3L	1110661	3L_1110661_SNP [dm3] 3L_1110661_SNP [dm6]	C	G	2.001e^-4	0.707	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	7663187	2L_7663187_SNP [dm3] 2L_7663187_SNP [dm6]	A	G	2.001e^-4	0.707	INTRON Slob
X	22107322	X_22107322_SNP [dm3] X_22705486_SNP [dm6]	G	T	2.002e^-4	0.707	INTRON CR44997	transposable element FlyBase
3L	18386947	3L_18386947_SNP [dm3] 3L_18393847_SNP [dm6]	G	A	2.002e^-4	0.707	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	4116835	X_4116835_SNP [dm3] X_4222802_SNP [dm6]	G	C	2.008e^-4	0.707	SYNONYMOUS_CODING CG15570
X	22118760	X_22118760_SNP [dm3] X_22716924_SNP [dm6]	A	G	2.009e^-4	0.707	INTRON CR44997
3L	14670091	3L_14670091_SNP [dm3] 3L_14676991_SNP [dm6]	A	T	2.011e^-4	0.707	INTRON ome & 1 other
X	22110934	X_22110934_SNP [dm3] X_22709098_SNP [dm6]	G	A	2.012e^-4	0.707	INTRON CR44997	transposable element FlyBase
2L	15032334	2L_15032334_SNP [dm3] 2L_15032334_SNP [dm6]	G	A	2.015e^-4	0.707	UPSTREAM CG31832 INTRON GABA-B-R1
2L	12308858	2L_12308858_SNP [dm3] 2L_12308858_SNP [dm6]	C	A	2.026e^-4	0.707	INTRON aret
3L	16979014	3L_16979014_SNP [dm3] 3L_16985914_SNP [dm6]	G	A	2.027e^-4	0.707	UPSTREAM Exn INTRON Exn	TF binding site mE1_TFBS_bab1 mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3R	7882340	3R_7882340_DEL [dm3] 3R_12056618_DEL [dm6]	GGCACGCCAATCT...	G	2.029e^-4	0.707	INTERGENIC
2L	435086	2L_435086_SNP [dm3] 2L_435086_SNP [dm6]	T	G	2.038e^-4	0.707	INTRON ex
X	12410589	X_12410589_SNP [dm3] X_12516556_SNP [dm6]	T	A	2.044e^-4	0.707	UTR_3_PRIME CG2556 DOWNSTREAM CG43921
X	4291755	X_4291755_SNP [dm3] X_4397722_SNP [dm6]	G	A	2.046e^-4	0.707	INTRON CR32773
2R	11397227	2R_11397227_SNP [dm3] 2R_15509722_SNP [dm6]	A	G	2.051e^-4	0.707	INTERGENIC
3R	1821529	3R_1821529_SNP [dm3] 3R_5995807_SNP [dm6]	G	T	2.053e^-4	0.707	EXON CR44928
2L	11255396	2L_11255396_SNP [dm3] 2L_11255396_SNP [dm6]	C	A	2.060e^-4	0.707	INTRON ab	TF binding site mE1_TFBS_cad
2R	10614047	2R_10614047_SNP [dm3] 2R_14726542_SNP [dm6]	A	G	2.064e^-4	0.707	INTERGENIC
X	22105858	X_22105858_SNP [dm3] X_22704022_SNP [dm6]	A	T	2.066e^-4	0.707	INTRON CR44997	transposable element FlyBase
2L	9985240	2L_9985240_INS [dm3] 2L_9985240_INS [dm6]	C	CGAAAACTTAACATTTACAA...	2.077e^-4	0.707	UPSTREAM CR13130 INTRON bib	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12445863	X_12445863_INS [dm3] X_12551830_INS [dm6]	T	TTTT	2.085e^-4	0.707	INTRON CG43921
2R	10630091	2R_10630091_SNP [dm3] 2R_14742586_SNP [dm6]	A	G	2.087e^-4	0.707	SYNONYMOUS_CODING CG12858
X	11341078	X_11341078_SNP [dm3] X_11447045_SNP [dm6]	G	A	2.092e^-4	0.707	INTRON Evi5	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
2L	13229501	2L_13229501_SNP [dm3] 2L_13229501_SNP [dm6]	T	G	2.093e^-4	0.707	UPSTREAM CG16815 DOWNSTREAM CG16813 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
2L	10389122	2L_10389122_SNP [dm3] 2L_10389122_SNP [dm6]	T	C	2.104e^-4	0.707	INTRON da	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	22135410	X_22135410_SNP [dm3] X_22733574_SNP [dm6]	A	G	2.104e^-4	0.707	INTRON CR44997
2L	12444935	2L_12444935_MNP [dm3] 2L_12444935_MNP [dm6]	AAG	TGT	2.107e^-4	0.707	INTRON Oatp33Ea	TF binding site BDTNP1_TFBS_da
2R	602938	2R_602938_INS [dm3] 2R_4715433_INS [dm6]	A	ATTTAAGCGA	2.109e^-4	0.707	INTRON Nipped-B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA transposable element FlyBase
3R	18430912	3R_18430912_SNP [dm3] 3R_22605190_SNP [dm6]	G	A	2.112e^-4	0.707	SYNONYMOUS_CODING Efa6
2R	11380943	2R_11380943_SNP [dm3] 2R_15493438_SNP [dm6]	C	T	2.115e^-4	0.707	INTRON CG12964
2R	3517555	2R_3517555_SNP [dm3] 2R_7630050_SNP [dm6]	T	C	2.115e^-4	0.707	INTRON CG43340	TF binding site mE1_TFBS_cad
3L	19793165	3L_19793165_SNP [dm3] 3L_19800065_SNP [dm6]	G	T	2.118e^-4	0.707	NON_SYNONYMOUS_CODING CG14102 INTRON Ir76a
2L	4340828	2L_4340828_DEL [dm3] 2L_4340828_DEL [dm6]	TG	A	2.119e^-4	0.707	INTRON Atet
2R	9888434	2R_9888434_SNP [dm3] 2R_14000929_SNP [dm6]	G	A	2.124e^-4	0.707	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	11306728	2R_11306728_SNP [dm3] 2R_15419223_SNP [dm6]	T	C	2.124e^-4	0.707	INTRON CG43729
2L	5450228	2L_5450228_SNP [dm3] 2L_5450228_SNP [dm6]	C	A	2.127e^-4	0.707	INTERGENIC
2R	7710377	2R_7710377_SNP [dm3] 2R_11822872_SNP [dm6]	G	A	2.129e^-4	0.707	INTERGENIC
2R	6369187	2R_6369187_SNP [dm3] 2R_10481682_SNP [dm6]	A	T	2.132e^-4	0.707	UTR_3_PRIME CG17765 DOWNSTREAM lola & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
2R	17771766	2R_17771766_SNP [dm3] 2R_21884261_SNP [dm6]	G	A	2.136e^-4	0.707	INTRON Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
X	22110476	X_22110476_SNP [dm3] X_22708640_SNP [dm6]	A	G	2.147e^-4	0.707	INTRON CR44997
3R	18163808	3R_18163808_SNP [dm3] 3R_22338086_SNP [dm6]	C	A	2.147e^-4	0.707	INTRON CG5388
3R	16794912	3R_16794912_SNP [dm3] 3R_20969190_SNP [dm6]	C	T	2.149e^-4	0.707	INTRON Atpalpha
3L	13627269	3L_13627269_SNP [dm3] 3L_13634169_SNP [dm6]	A	G	2.155e^-4	0.707	INTRON bru-3
3L	1570772	3L_1570772_SNP [dm3] 3L_1570772_SNP [dm6]	T	C	2.155e^-4	0.707	INTRON CG12004	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	22112922	X_22112922_SNP [dm3] X_22711086_SNP [dm6]	G	A	2.159e^-4	0.707	INTRON CR44997	transposable element FlyBase
3L	2757914	3L_2757914_SNP [dm3] 3L_2757914_SNP [dm6]	T	A	2.170e^-4	0.707	INTRON Mrtf	TF binding site BDTNP1_TFBS_twi
X	22105859	X_22105859_SNP [dm3] X_22704023_SNP [dm6]	A	G	2.170e^-4	0.707	INTRON CR44997	transposable element FlyBase
X	1625862	X_1625862_SNP [dm3] X_1731829_SNP [dm6]	C	T	2.173e^-4	0.707	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4340869	2L_4340869_SNP [dm3] 2L_4340869_SNP [dm6]	G	A	2.174e^-4	0.707	INTRON Atet
X	22128750	X_22128750_SNP [dm3] X_22726914_SNP [dm6]	A	T	2.177e^-4	0.707	INTRON CR44997	transposable element FlyBase
2L	934761	2L_934761_SNP [dm3] 2L_934761_SNP [dm6]	T	G	2.177e^-4	0.707	INTRON CG4341	TF binding site mE1_TFBS_chinmo
2R	17771759	2R_17771759_DEL [dm3] 2R_21884254_DEL [dm6]	AAT	A	2.192e^-4	0.708	INTRON Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
2R	14704154	2R_14704154_SNP [dm3] 2R_18816649_SNP [dm6]	A	G	2.202e^-4	0.708	UPSTREAM CG15096 INTERGENIC
X	7331220	X_7331220_SNP [dm3] X_7437187_SNP [dm6]	C	A	2.203e^-4	0.708	INTERGENIC
2L	5389202	2L_5389202_SNP [dm3] 2L_5389202_SNP [dm6]	G	T	2.204e^-4	0.708	DOWNSTREAM CR44745 INTERGENIC
3R	7316220	3R_7316220_SNP [dm3] 3R_11490498_SNP [dm6]	A	G	2.206e^-4	0.708	INTERGENIC
X	22129172	X_22129172_SNP [dm3] X_22727336_SNP [dm6]	G	A	2.209e^-4	0.708	INTRON CR44997	transposable element FlyBase
X	22111927	X_22111927_SNP [dm3] X_22710091_SNP [dm6]	C	A	2.215e^-4	0.708	INTRON CR44997	transposable element FlyBase
3L	13915432	3L_13915432_SNP [dm3] 3L_13922332_SNP [dm6]	T	C	2.218e^-4	0.708	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	16726205	3R_16726205_SNP [dm3] 3R_20900483_SNP [dm6]	T	C	2.224e^-4	0.708	INTERGENIC
2L	1029693	2L_1029693_SNP [dm3] 2L_1029693_SNP [dm6]	A	C	2.225e^-4	0.708	INTRON IA-2
X	22107244	X_22107244_SNP [dm3] X_22705408_SNP [dm6]	G	A	2.225e^-4	0.708	INTRON CR44997	transposable element FlyBase
2R	11400424	2R_11400424_SNP [dm3] 2R_15512919_SNP [dm6]	A	C	2.228e^-4	0.708	UPSTREAM GalNAc-T1 INTRON GalNAc-T1
2L	12943082	2L_12943082_SNP [dm3] 2L_12943082_SNP [dm6]	C	T	2.231e^-4	0.708	INTERGENIC
3R	14829446	3R_14829446_SNP [dm3] 3R_19003724_SNP [dm6]	C	A	2.247e^-4	0.709	INTRON gukh	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	22126593	X_22126593_SNP [dm3] X_22724757_SNP [dm6]	T	A	2.252e^-4	0.709	INTRON CR44997
3L	760091	3L_760091_SNP [dm3] 3L_760091_SNP [dm6]	G	A	2.254e^-4	0.709	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
X	22126632	X_22126632_SNP [dm3] X_22724796_SNP [dm6]	G	T	2.260e^-4	0.709	INTRON CR44997
X	22113064	X_22113064_SNP [dm3] X_22711228_SNP [dm6]	C	A	2.268e^-4	0.709	INTRON CR44997	transposable element FlyBase
X	12445231	X_12445231_SNP [dm3] X_12551198_SNP [dm6]	A	C	2.269e^-4	0.709	INTRON CG43921
2R	10106096	2R_10106096_SNP [dm3] 2R_14218591_SNP [dm6]	C	A	2.270e^-4	0.709	INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
3R	13322193	3R_13322193_SNP [dm3] 3R_17496471_SNP [dm6]	C	T	2.270e^-4	0.709	INTRON Dscam3
2R	10106093	2R_10106093_SNP [dm3] 2R_14218588_SNP [dm6]	T	A	2.272e^-4	0.709	INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
2L	14100089	2L_14100089_SNP [dm3] 2L_14100089_SNP [dm6]	T	C	2.278e^-4	0.709	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17180483	3L_17180483_SNP [dm3] 3L_17187383_SNP [dm6]	C	T	2.280e^-4	0.709	INTRON Rbp6
2L	9399312	2L_9399312_SNP [dm3] 2L_9399312_SNP [dm6]	C	A	2.281e^-4	0.709	INTRON Shawl
X	22063864	X_22063864_DEL [dm3] X_22662028_DEL [dm6]	TCAGCACCGAAACTCTGTTC...	T	2.285e^-4	0.709	INTRON CR44997
3R	12547594	3R_12547594_SNP [dm3] 3R_16721872_SNP [dm6]	C	G	2.288e^-4	0.709	INTRON Ubx	TF binding site BDTNP1_TFBS_da
X	22115575	X_22115575_SNP [dm3] X_22713739_SNP [dm6]	C	T	2.308e^-4	0.71	INTRON CR44997	transposable element FlyBase
2R	19076329	2R_19076329_DEL [dm3] 2R_23188806_DEL [dm6]	AA	A	2.309e^-4	0.71	INTRON CG34371	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	3255981	X_3255981_SNP [dm3] X_3361948_SNP [dm6]	C	T	2.310e^-4	0.71	INTERGENIC
X	22063980	X_22063980_SNP [dm3] X_22662144_SNP [dm6]	G	A	2.311e^-4	0.71	INTRON CR44997
X	22129223	X_22129223_SNP [dm3] X_22727387_SNP [dm6]	C	A	2.314e^-4	0.71	INTRON CR44997	transposable element FlyBase
2R	14540002	2R_14540002_SNP [dm3] 2R_18652497_SNP [dm6]	T	A	2.322e^-4	0.71	INTRON SP2637	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	12381091	X_12381091_SNP [dm3] X_12487058_SNP [dm6]	A	T	2.323e^-4	0.71	UTR_5_PRIME Cpr11A
3L	13736656	3L_13736656_SNP [dm3] 3L_13743556_SNP [dm6]	G	T	2.324e^-4	0.71	INTRON bru-3
X	9664813	X_9664813_SNP [dm3] X_9770780_SNP [dm6]	G	A	2.325e^-4	0.71	INTERGENIC
2R	4542448	2R_4542448_SNP [dm3] 2R_8654943_SNP [dm6]	C	G	2.333e^-4	0.711	INTRON ptc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9253428	2L_9253428_INS [dm3] 2L_9253428_INS [dm6]	G	CACGACATAAAAACAAAAA...	2.338e^-4	0.711	UPSTREAM borr DOWNSTREAM lectin-30A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	14486560	3R_14486560_SNP [dm3] 3R_18660838_SNP [dm6]	C	T	2.344e^-4	0.711	SYNONYMOUS_CODING CstF-64 DOWNSTREAM Cpsf73	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	21871455	2L_21871455_SNP [dm3] 2L_21871455_SNP [dm6]	C	G	2.345e^-4	0.711	UPSTREAM CR44920 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10583637	2R_10583637_SNP [dm3] 2R_14696132_SNP [dm6]	T	C	2.346e^-4	0.711	INTRON mspo
2L	9286767	2L_9286767_SNP [dm3] 2L_9286767_SNP [dm6]	C	A	2.353e^-4	0.712	INTRON Ggamma30A
2L	1918401	2L_1918401_SNP [dm3] 2L_1918401_SNP [dm6]	G	A	2.357e^-4	0.712	INTRON CG7337
3L	15992159	3L_15992159_SNP [dm3] 3L_15999059_SNP [dm6]	A	G	2.373e^-4	0.716	INTRON CG5830
3R	16726450	3R_16726450_DEL [dm3] 3R_20900728_DEL [dm6]	AAAGGA	A	2.381e^-4	0.716	INTERGENIC
X	9664711	X_9664711_SNP [dm3] X_9770678_SNP [dm6]	C	G	2.385e^-4	0.716	INTERGENIC
2R	12488516	2R_12488516_SNP [dm3] 2R_16601011_SNP [dm6]	A	T	2.388e^-4	0.716	DOWNSTREAM CG5089 INTRON CG8303
3L	10631736	3L_10631736_SNP [dm3] 3L_10638636_SNP [dm6]	C	A	2.389e^-4	0.716	SYNONYMOUS_CODING CG8009 UPSTREAM E_z_	TF binding site BDTNP1_TFBS_Med
2L	11877561	2L_11877561_SNP [dm3] 2L_11877561_SNP [dm6]	T	A	2.393e^-4	0.716	UPSTREAM Pde1c INTRON Pde1c	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	21872767	2L_21872767_SNP [dm3] 2L_21872767_SNP [dm6]	C	G	2.399e^-4	0.716	INTERGENIC
X	22126501	X_22126501_SNP [dm3] X_22724665_SNP [dm6]	G	A	2.403e^-4	0.716	INTRON CR44997
2R	10420442	2R_10420442_SNP [dm3] 2R_14532937_SNP [dm6]	G	A	2.407e^-4	0.716	INTRON ttv
3L	12058930	3L_12058930_SNP [dm3] 3L_12065830_SNP [dm6]	T	C	2.410e^-4	0.716	UPSTREAM rols INTERGENIC
2R	8282277	2R_8282277_SNP [dm3] 2R_12394772_SNP [dm6]	C	A	2.413e^-4	0.716	UPSTREAM CG30048 INTRON Or49a
2L	7748254	2L_7748254_SNP [dm3] 2L_7748254_SNP [dm6]	G	A	2.425e^-4	0.717	DOWNSTREAM CG7211 INTERGENIC
2L	9253430	2L_9253430_SNP [dm3] 2L_9253430_SNP [dm6]	T	A	2.431e^-4	0.717	UPSTREAM borr DOWNSTREAM lectin-30A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	4290628	3L_4290628_SNP [dm3] 3L_4290628_SNP [dm6]	G	A	2.432e^-4	0.717	SYNONYMOUS_CODING Hexo1 DOWNSTREAM CG15012	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	20522845	X_20522845_SNP [dm3] X_20651818_SNP [dm6]	A	T	2.434e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	25234856	3R_25234856_SNP [dm3] 3R_29409134_SNP [dm6]	A	C	2.436e^-4	0.717	INTRON Ptp99A
3R	2079300	3R_2079300_SNP [dm3] 3R_6253578_SNP [dm6]	C	T	2.438e^-4	0.717	INTERGENIC
X	22122855	X_22122855_SNP [dm3] X_22721019_SNP [dm6]	C	T	2.446e^-4	0.718	INTRON CR44997	transposable element FlyBase
3L	9910129	3L_9910129_SNP [dm3] 3L_9917029_SNP [dm6]	G	A	2.449e^-4	0.718	INTRON CG34356
2L	19377247	2L_19377247_SNP [dm3] 2L_19377247_SNP [dm6]	C	A	2.456e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	11421174	2L_11421174_SNP [dm3] 2L_11421174_SNP [dm6]	G	A	2.458e^-4	0.718	INTERGENIC
X	5365959	X_5365959_SNP [dm3] X_5471926_SNP [dm6]	T	C	2.468e^-4	0.72	INTRON SPR
X	22105854	X_22105854_DEL [dm3] X_22704018_DEL [dm6]	TTA	T	2.482e^-4	0.722	INTRON CR44997	transposable element FlyBase
3L	1570771	3L_1570771_SNP [dm3] 3L_1570771_SNP [dm6]	A	C	2.484e^-4	0.722	INTRON CG12004	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	25807406	3R_25807406_SNP [dm3] 3R_29981684_SNP [dm6]	T	C	2.495e^-4	0.722	INTERGENIC
2L	2134502	2L_2134502_SNP [dm3] 2L_2134502_SNP [dm6]	C	T	2.496e^-4	0.722	SYNONYMOUS_CODING GlyP	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	3620037	X_3620037_INS [dm3] X_3726004_INS [dm6]	T	TGTAT	2.497e^-4	0.722	INTRON tlk	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	10981569	2R_10981569_SNP [dm3] 2R_15094064_SNP [dm6]	G	T	2.499e^-4	0.722	INTERGENIC
2L	4340852	2L_4340852_SNP [dm3] 2L_4340852_SNP [dm6]	G	A	2.501e^-4	0.722	INTRON Atet
2L	2315178	2L_2315178_SNP [dm3] 2L_2315178_SNP [dm6]	A	G	2.506e^-4	0.722	INTRON CG9967 & 1 other
2L	3773677	2L_3773677_SNP [dm3] 2L_3773677_SNP [dm6]	C	G	2.522e^-4	0.722	INTRON bowl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	14658650	2R_14658650_SNP [dm3] 2R_18771145_SNP [dm6]	A	T	2.523e^-4	0.722	UPSTREAM Mctp DOWNSTREAM tRNA:CR30229 INTRON Mctp
2L	14975061	2L_14975061_SNP [dm3] 2L_14975061_SNP [dm6]	T	C	2.524e^-4	0.722	DOWNSTREAM mol & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2581554	3L_2581554_SNP [dm3] 3L_2581554_SNP [dm6]	G	C	2.525e^-4	0.722	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	2315201	2L_2315201_SNP [dm3] 2L_2315201_SNP [dm6]	G	C	2.532e^-4	0.722	INTRON CG9967 & 1 other
2R	15401298	2R_15401298_SNP [dm3] 2R_19513793_SNP [dm6]	A	C	2.534e^-4	0.722	UPSTREAM Ir56d INTERGENIC
2L	11234848	2L_11234848_SNP [dm3] 2L_11234848_SNP [dm6]	A	T	2.536e^-4	0.722	UPSTREAM ab INTRON ab EXON snoRNA:Me18S-G642
2L	4200187	2L_4200187_SNP [dm3] 2L_4200187_SNP [dm6]	C	T	2.538e^-4	0.722	NON_SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	5591696	2L_5591696_SNP [dm3] 2L_5591696_SNP [dm6]	A	G	2.545e^-4	0.723	INTERGENIC
3L	3874200	3L_3874200_SNP [dm3] 3L_3874200_SNP [dm6]	G	A	2.548e^-4	0.723	INTERGENIC	TF binding site mE1_TFBS_cad
2R	17771795	2R_17771795_SNP [dm3] 2R_21884290_SNP [dm6]	G	A	2.558e^-4	0.723	INTRON Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17584829	2R_17584829_DEL [dm3] 2R_21697324_DEL [dm6]	TTA	T	2.572e^-4	0.723	UPSTREAM CngB DOWNSTREAM HmgZ INTERGENIC
3R	16726251	3R_16726251_SNP [dm3] 3R_20900529_SNP [dm6]	T	A	2.574e^-4	0.723	INTERGENIC
2R	17586441	2R_17586441_SNP [dm3] 2R_21698936_SNP [dm6]	A	C	2.576e^-4	0.723	INTRON HmgZ
X	22115351	X_22115351_SNP [dm3] X_22713515_SNP [dm6]	C	A	2.576e^-4	0.723	INTRON CR44997	transposable element FlyBase
X	22096303	X_22096303_SNP [dm3] X_22694467_SNP [dm6]	T	A	2.582e^-4	0.723	INTRON CR44997
3L	16979285	3L_16979285_SNP [dm3] 3L_16986185_SNP [dm6]	C	G	2.585e^-4	0.723	UPSTREAM Exn INTRON Exn	TF binding site mE1_TFBS_bab1 mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3R	2335277	3R_2335277_DEL [dm3] 3R_6509555_DEL [dm6]	TCCGTCCC	T	2.586e^-4	0.723	INTERGENIC
3R	22011247	3R_22011247_SNP [dm3] 3R_26185525_SNP [dm6]	G	A	2.586e^-4	0.723	UTR_5_PRIME CG31086 UTR_3_PRIME CG31323 UPSTREAM CG31086 DOWNSTREAM CG31323
X	8282413	X_8282413_SNP [dm3] X_8388380_SNP [dm6]	G	A	2.588e^-4	0.723	SYNONYMOUS_CODING CG1387	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17054282	2L_17054282_SNP [dm3] 2L_17054282_SNP [dm6]	A	T	2.590e^-4	0.723	INTERGENIC
2L	9488531	2L_9488531_SNP [dm3] 2L_9488531_SNP [dm6]	G	C	2.595e^-4	0.723	INTERGENIC
X	22106866	X_22106866_SNP [dm3] X_22705030_SNP [dm6]	A	G	2.603e^-4	0.724	INTRON CR44997	transposable element FlyBase
3R	7310579	3R_7310579_SNP [dm3] 3R_11484857_SNP [dm6]	G	C	2.607e^-4	0.724	INTERGENIC
3L	3496718	3L_3496718_SNP [dm3] 3L_3496718_SNP [dm6]	G	T	2.616e^-4	0.725	INTRON CG42324
2R	11398845	2R_11398845_SNP [dm3] 2R_15511340_SNP [dm6]	G	C	2.618e^-4	0.725	UPSTREAM GalNAc-T1 INTERGENIC
2R	10583639	2R_10583639_SNP [dm3] 2R_14696134_SNP [dm6]	C	T	2.631e^-4	0.727	INTRON mspo
2L	9584906	2L_9584906_SNP [dm3] 2L_9584906_SNP [dm6]	T	G	2.641e^-4	0.727	EXON CR43621	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	5039161	2L_5039161_SNP [dm3] 2L_5039161_SNP [dm6]	G	A	2.642e^-4	0.727	SYNONYMOUS_CODING SP555 UTR_3_PRIME CG14042 DOWNSTREAM CG14042	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	2397510	X_2397510_SNP [dm3] X_2503477_SNP [dm6]	G	T	2.642e^-4	0.727	INTRON trol
3R	16977130	3R_16977130_SNP [dm3] 3R_21151408_SNP [dm6]	G	A	2.644e^-4	0.727	INTRON SNF4Agamma
3L	780426	3L_780426_SNP [dm3] 3L_780426_SNP [dm6]	C	A	2.651e^-4	0.728	INTERGENIC
2L	8981613	2L_8981613_SNP [dm3] 2L_8981613_SNP [dm6]	T	G	2.653e^-4	0.728	DOWNSTREAM CG18662 INTRON CG13101
3R	25368425	3R_25368425_SNP [dm3] 3R_29542703_SNP [dm6]	A	C	2.661e^-4	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19764943	3R_19764943_SNP [dm3] 3R_23939221_SNP [dm6]	G	A	2.662e^-4	0.728	UPSTREAM Gdh INTRON Gdh
3R	18483105	3R_18483105_SNP [dm3] 3R_22657383_SNP [dm6]	G	T	2.666e^-4	0.728	INTRON CG45058
X	3620032	X_3620032_MNP [dm3] X_3725999_MNP [dm6]	GGT	TAA	2.675e^-4	0.729	INTRON tlk	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	7313945	3R_7313945_SNP [dm3] 3R_11488223_SNP [dm6]	C	A	2.683e^-4	0.729	DOWNSTREAM CR45581 INTERGENIC
2L	17355145	2L_17355145_INS [dm3] 2L_17355145_INS [dm6]	A	AA	2.685e^-4	0.729	UPSTREAM CR43239 EXON CR44345
2L	3264956	2L_3264956_SNP [dm3] 2L_3264956_SNP [dm6]	T	C	2.685e^-4	0.729	EXON CR45706
2R	10634726	2R_10634726_SNP [dm3] 2R_14747221_SNP [dm6]	C	A	2.689e^-4	0.729	UPSTREAM AttA DOWNSTREAM Dro INTERGENIC	regulatory region REDfly_CRMs
X	22113127	X_22113127_SNP [dm3] X_22711291_SNP [dm6]	G	A	2.694e^-4	0.729	INTRON CR44997	transposable element FlyBase
2L	2686003	2L_2686003_SNP [dm3] 2L_2686003_SNP [dm6]	G	A	2.696e^-4	0.729	INTRON CG31690
2R	9117365	2R_9117365_SNP [dm3] 2R_13229860_SNP [dm6]	T	C	2.709e^-4	0.729	SYNONYMOUS_CODING Pex13 UPSTREAM fsd	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	14019559	3L_14019559_SNP [dm3] 3L_14026459_SNP [dm6]	T	C	2.712e^-4	0.729	SYNONYMOUS_CODING ptip	TF binding site mE1_TFBS_chinmo
3L	16631269	3L_16631269_SNP [dm3] 3L_16638169_SNP [dm6]	T	G	2.722e^-4	0.729	INTRON Abl
X	22105842	X_22105842_SNP [dm3] X_22704006_SNP [dm6]	G	C	2.749e^-4	0.729	INTRON CR44997	transposable element FlyBase
2R	11398544	2R_11398544_SNP [dm3] 2R_15511039_SNP [dm6]	G	A	2.754e^-4	0.729	UPSTREAM GalNAc-T1 INTERGENIC
2L	9833391	2L_9833391_SNP [dm3] 2L_9833391_SNP [dm6]	T	C	2.755e^-4	0.729	INTRON nAChRalpha6
2L	741064	2L_741064_SNP [dm3] 2L_741064_SNP [dm6]	A	G	2.758e^-4	0.729	UTR_5_PRIME Eaat2 INTRON Eaat2
3R	14652073	3R_14652073_DEL [dm3] 3R_18826351_DEL [dm6]	CG	C	2.759e^-4	0.729	INTRON CG18208
2L	4340831	2L_4340831_DEL [dm3] 2L_4340831_DEL [dm6]	AC	A	2.761e^-4	0.729	INTRON Atet
2L	4340845	2L_4340845_SNP [dm3] 2L_4340845_SNP [dm6]	T	A	2.761e^-4	0.729	INTRON Atet
2R	9524349	2R_9524349_SNP [dm3] 2R_13636844_SNP [dm6]	C	A	2.762e^-4	0.729	INTRON fas
2L	937197	2L_937197_SNP [dm3] 2L_937197_SNP [dm6]	C	A	2.763e^-4	0.729	INTRON CG4341	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24294624	3R_24294624_SNP [dm3] 3R_28468902_SNP [dm6]	C	T	2.765e^-4	0.729	INTRON beat-VI
X	5230114	X_5230114_SNP [dm3] X_5336081_SNP [dm6]	G	A	2.768e^-4	0.729	INTERGENIC
3L	2096565	3L_2096565_SNP [dm3] 3L_2096565_SNP [dm6]	C	T	2.770e^-4	0.729	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	22105871	X_22105871_SNP [dm3] X_22704035_SNP [dm6]	C	A	2.771e^-4	0.729	INTRON CR44997	transposable element FlyBase
2R	8905424	2R_8905424_SNP [dm3] 2R_13017919_SNP [dm6]	A	G	2.777e^-4	0.729	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	5389286	2L_5389286_SNP [dm3] 2L_5389286_SNP [dm6]	A	T	2.787e^-4	0.729	DOWNSTREAM CR44745 INTERGENIC
2R	10421840	2R_10421840_SNP [dm3] 2R_14534335_SNP [dm6]	T	G	2.788e^-4	0.729	INTRON ttv
2R	16471782	2R_16471782_SNP [dm3] 2R_20584277_SNP [dm6]	G	T	2.790e^-4	0.729	UPSTREAM qsm & 4 others DOWNSTREAM mir-2498 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
2L	14135638	2L_14135638_SNP [dm3] 2L_14135638_SNP [dm6]	A	T	2.797e^-4	0.729	INTRON CG17341
3L	9701598	3L_9701598_SNP [dm3] 3L_9708498_SNP [dm6]	T	C	2.797e^-4	0.729	INTRON CG16711	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16691025	3L_16691025_SNP [dm3] 3L_16697925_SNP [dm6]	G	A	2.798e^-4	0.729	DOWNSTREAM CR45179 INTRON Lasp & 1 other
3R	24253132	3R_24253132_SNP [dm3] 3R_28427410_SNP [dm6]	G	A	2.799e^-4	0.729	INTRON beat-VI
2L	6804599	2L_6804599_SNP [dm3] 2L_6804599_SNP [dm6]	A	G	2.801e^-4	0.729	UTR_3_PRIME CG17375 DOWNSTREAM CG17375 & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	2364257	3R_2364257_SNP [dm3] 3R_6538535_SNP [dm6]	C	A	2.813e^-4	0.729	INTRON dpr11
3R	7003923	3R_7003923_SNP [dm3] 3R_11178201_SNP [dm6]	A	G	2.815e^-4	0.729	DOWNSTREAM Ugt86Dh INTERGENIC
3R	16726435	3R_16726435_INS [dm3] 3R_20900713_INS [dm6]	A	AG	2.823e^-4	0.729	INTERGENIC
3R	16978006	3R_16978006_DEL [dm3] 3R_21152284_DEL [dm6]	GC	T	2.823e^-4	0.729	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	14489814	3R_14489814_SNP [dm3] 3R_18664092_SNP [dm6]	G	C	2.827e^-4	0.729	UPSTREAM Cpsf73 INTRON Gos28	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	2182058	2L_2182058_SNP [dm3] 2L_2182058_SNP [dm6]	T	A	2.836e^-4	0.729	EXON CR43751	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	22113644	X_22113644_SNP [dm3] X_22711808_SNP [dm6]	A	G	2.836e^-4	0.729	INTRON CR44997
2R	17543727	2R_17543727_SNP [dm3] 2R_21656222_SNP [dm6]	A	G	2.845e^-4	0.729	SYNONYMOUS_CODING CG10082 DOWNSTREAM CR43786	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12992294	X_12992294_SNP [dm3] X_13098261_SNP [dm6]	A	G	2.847e^-4	0.729	SYNONYMOUS_CODING CG43313	TF binding site mE1_TFBS_cad
2L	5389328	2L_5389328_SNP [dm3] 2L_5389328_SNP [dm6]	T	C	2.848e^-4	0.729	DOWNSTREAM CR44745 INTERGENIC
3R	20773818	3R_20773818_SNP [dm3] 3R_24948096_SNP [dm6]	G	C	2.854e^-4	0.729	SYNONYMOUS_CODING CG13646 DOWNSTREAM Nmnat	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6765538	2L_6765538_SNP [dm3] 2L_6765538_SNP [dm6]	T	A	2.856e^-4	0.729	NON_SYNONYMOUS_CODING CG11321
3L	14670113	3L_14670113_SNP [dm3] 3L_14677013_SNP [dm6]	G	T	2.862e^-4	0.729	INTRON ome & 1 other
2L	4022281	2L_4022281_SNP [dm3] 2L_4022281_SNP [dm6]	A	T	2.866e^-4	0.729	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	16555528	2R_16555528_SNP [dm3] 2R_20668023_SNP [dm6]	A	T	2.870e^-4	0.729	UTR_3_PRIME exu UPSTREAM Fem-1 DOWNSTREAM exu	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3R	12259247	3R_12259247_SNP [dm3] 3R_16433525_SNP [dm6]	G	T	2.874e^-4	0.729	DOWNSTREAM CG31279 INTRON CG17565	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	16794909	3R_16794909_SNP [dm3] 3R_20969187_SNP [dm6]	A	T	2.879e^-4	0.729	INTRON Atpalpha
2L	17327282	2L_17327282_SNP [dm3] 2L_17327282_SNP [dm6]	G	T	2.880e^-4	0.729	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
3R	18161269	3R_18161269_SNP [dm3] 3R_22335547_SNP [dm6]	G	T	2.880e^-4	0.729	INTRON CG5388
2R	14764248	2R_14764248_SNP [dm3] 2R_18876743_SNP [dm6]	T	C	2.881e^-4	0.729	INTERGENIC
X	9664740	X_9664740_DEL [dm3] X_9770707_DEL [dm6]	TAAC	T	2.881e^-4	0.729	INTERGENIC
X	3620036	X_3620036_SNP [dm3] X_3726003_SNP [dm6]	G	A	2.881e^-4	0.729	INTRON tlk	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	22144031	X_22144031_SNP [dm3] X_22742195_SNP [dm6]	C	A	2.887e^-4	0.729	INTRON CR44997	transposable element FlyBase
2L	755305	2L_755305_SNP [dm3] 2L_755305_SNP [dm6]	C	A	2.899e^-4	0.729	INTRON GABA-B-R3
3R	5657766	3R_5657766_SNP [dm3] 3R_9832044_SNP [dm6]	A	C	2.904e^-4	0.729	INTRON Teh1
3R	21124232	3R_21124232_SNP [dm3] 3R_25298510_SNP [dm6]	G	C	2.905e^-4	0.729	NON_SYNONYMOUS_CODING CG31288 UPSTREAM CG31097
2R	18779081	2R_18779081_SNP [dm3] 2R_22891558_SNP [dm6]	C	T	2.905e^-4	0.729	SYNONYMOUS_CODING MED23	TF binding site mE1_TFBS_cad
X	22146570	X_22146570_SNP [dm3] X_22744734_SNP [dm6]	T	C	2.912e^-4	0.729	INTRON CR44997	transposable element FlyBase
2R	11403245	2R_11403245_DEL [dm3] 2R_15515740_DEL [dm6]	CC	C	2.920e^-4	0.729	DOWNSTREAM Khc-73 & 1 other INTERGENIC
3L	16189642	3L_16189642_SNP [dm3] 3L_16196542_SNP [dm6]	T	A	2.921e^-4	0.729	EXON CR45437
2L	7588154	2L_7588154_SNP [dm3] 2L_7588154_SNP [dm6]	G	T	2.922e^-4	0.729	INTERGENIC
2R	11385223	2R_11385223_DEL [dm3] 2R_15497718_DEL [dm6]	ATAC	T	2.930e^-4	0.729	UPSTREAM CG12964 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	11385228	2R_11385228_SNP [dm3] 2R_15497723_SNP [dm6]	T	G	2.930e^-4	0.729	UPSTREAM CG12964 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	15171972	2R_15171972_SNP [dm3] 2R_19284467_SNP [dm6]	T	A	2.937e^-4	0.729	UPSTREAM CG11906 DOWNSTREAM CG10476 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12444952	2L_12444952_SNP [dm3] 2L_12444952_SNP [dm6]	G	A	2.937e^-4	0.729	INTRON Oatp33Ea	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	21977855	2L_21977855_SNP [dm3] 2L_21977855_SNP [dm6]	A	T	2.940e^-4	0.729	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	22137603	X_22137603_SNP [dm3] X_22735767_SNP [dm6]	A	G	2.943e^-4	0.729	INTRON CR44997	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12228658	2L_12228658_INS [dm3] 2L_12228658_INS [dm6]	A	AAA	2.944e^-4	0.729	INTRON aret
2L	10676974	2L_10676974_DEL [dm3] 2L_10676974_DEL [dm6]	GCG	G	2.960e^-4	0.729	UPSTREAM CG17104 INTERGENIC
X	9664720	X_9664720_SNP [dm3] X_9770687_SNP [dm6]	C	T	2.961e^-4	0.729	INTERGENIC
3R	7003891	3R_7003891_INS [dm3] 3R_11178169_INS [dm6]	AC	TGTTTT	2.967e^-4	0.729	DOWNSTREAM Ugt86Dh INTERGENIC
3R	19081941	3R_19081941_SNP [dm3] 3R_23256219_SNP [dm6]	A	G	2.971e^-4	0.729	SYNONYMOUS_CODING wda	TF binding site mE1_TFBS_cad
3R	19567615	3R_19567615_SNP [dm3] 3R_23741893_SNP [dm6]	C	T	2.972e^-4	0.729	INTRON Hmgcr
3R	10287060	3R_10287060_SNP [dm3] 3R_14461338_SNP [dm6]	T	A	2.972e^-4	0.729	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc
X	22110342	X_22110342_SNP [dm3] X_22708506_SNP [dm6]	T	C	2.972e^-4	0.729	INTRON CR44997
3R	6009157	3R_6009157_SNP [dm3] 3R_10183435_SNP [dm6]	T	C	2.973e^-4	0.729	INTRON CG12814
3L	2610387	3L_2610387_SNP [dm3] 3L_2610387_SNP [dm6]	A	G	2.985e^-4	0.729	UTR_3_PRIME Pxn INTRON Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12615001	3L_12615001_SNP [dm3] 3L_12621901_SNP [dm6]	T	C	2.985e^-4	0.729	DOWNSTREAM caup INTERGENIC
2R	16431081	2R_16431081_SNP [dm3] 2R_20543576_SNP [dm6]	A	G	2.986e^-4	0.729	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	22110492	X_22110492_SNP [dm3] X_22708656_SNP [dm6]	G	A	2.992e^-4	0.73	INTRON CR44997
2L	12361678	2L_12361678_SNP [dm3] 2L_12361678_SNP [dm6]	G	A	3.004e^-4	0.732	INTRON bru-2
3L	8030452	3L_8030452_SNP [dm3] 3L_8037352_SNP [dm6]	C	T	3.014e^-4	0.733	INTRON nmo	TF binding site mE1_TFBS_inv
2L	9634243	2L_9634243_SNP [dm3] 2L_9634243_SNP [dm6]	G	A	3.018e^-4	0.733	UTR_5_PRIME Apoltp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	17180481	3L_17180481_SNP [dm3] 3L_17187381_SNP [dm6]	C	T	3.026e^-4	0.733	INTRON Rbp6
X	22111867	X_22111867_INS [dm3] X_22710031_INS [dm6]	A	TACTCCTGGAGGCTCTGAGC...	3.033e^-4	0.733	INTRON CR44997	transposable element FlyBase
X	22111870	X_22111870_SNP [dm3] X_22710034_SNP [dm6]	A	C	3.033e^-4	0.733	INTRON CR44997	transposable element FlyBase
2L	10724842	2L_10724842_SNP [dm3] 2L_10724842_SNP [dm6]	A	C	3.034e^-4	0.733	UPSTREAM CG6431 INTRON CG6431
3R	3311732	3R_3311732_DEL [dm3] 3R_7486010_DEL [dm6]	ATTTACCA	A	3.036e^-4	0.733	DOWNSTREAM alpha-Est10 INTERGENIC
X	22115438	X_22115438_SNP [dm3] X_22713602_SNP [dm6]	C	G	3.043e^-4	0.734	INTRON CR44997	transposable element FlyBase
3L	998450	3L_998450_SNP [dm3] 3L_998450_SNP [dm6]	A	C	3.055e^-4	0.736	SYNONYMOUS_CODING trio	TF binding site mE1_TFBS_HSA
3L	8536677	3L_8536677_SNP [dm3] 3L_8543577_SNP [dm6]	T	C	3.105e^-4	0.746	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	12941351	2L_12941351_SNP [dm3] 2L_12941351_SNP [dm6]	C	G	3.109e^-4	0.746	INTERGENIC
X	22125001	X_22125001_SNP [dm3] X_22723165_SNP [dm6]	T	G	3.114e^-4	0.746	INTRON CR44997	transposable element FlyBase
2L	7814622	2L_7814622_SNP [dm3] 2L_7814622_SNP [dm6]	G	A	3.116e^-4	0.746	UTR_5_PRIME LanB1
3R	14490595	3R_14490595_SNP [dm3] 3R_18664873_SNP [dm6]	T	C	3.119e^-4	0.746	SYNONYMOUS_CODING Gos28 UPSTREAM CG31231	TF binding site mE1_TFBS_cad
2L	4267642	2L_4267642_SNP [dm3] 2L_4267642_SNP [dm6]	C	T	3.125e^-4	0.747	INTERGENIC
3R	20773816	3R_20773816_SNP [dm3] 3R_24948094_SNP [dm6]	G	A	3.137e^-4	0.749	NON_SYNONYMOUS_CODING CG13646 DOWNSTREAM Nmnat	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19567625	3R_19567625_SNP [dm3] 3R_23741903_SNP [dm6]	A	G	3.145e^-4	0.749	INTRON Hmgcr
X	266830	X_266830_SNP [dm3] X_372797_SNP [dm6]	T	A	3.153e^-4	0.749	INTRON CG32816	regulatory region REDfly_CRMs
X	22106210	X_22106210_SNP [dm3] X_22704374_SNP [dm6]	G	C	3.154e^-4	0.749	INTRON CR44997	transposable element FlyBase
X	2495949	X_2495949_SNP [dm3] X_2601916_SNP [dm6]	G	A	3.167e^-4	0.749	SYNONYMOUS_CODING Klp3A	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	20918887	2L_20918887_DEL [dm3] 2L_20918887_DEL [dm6]	CGTTT	C	3.169e^-4	0.749	UTR_5_PRIME sky & 1 other DOWNSTREAM Mtp	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	9253432	2L_9253432_SNP [dm3] 2L_9253432_SNP [dm6]	A	C	3.170e^-4	0.749	UPSTREAM borr DOWNSTREAM lectin-30A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	867362	3L_867362_SNP [dm3] 3L_867362_SNP [dm6]	A	G	3.170e^-4	0.749	INTRON CG12502
2L	3675945	2L_3675945_SNP [dm3] 2L_3675945_SNP [dm6]	C	T	3.172e^-4	0.749	INTRON CG34340
3L	14356590	3L_14356590_DEL [dm3] 3L_14363490_DEL [dm6]	ATGAAAGC	A	3.182e^-4	0.751	INTRON fz
X	22135717	X_22135717_SNP [dm3] X_22733881_SNP [dm6]	T	C	3.185e^-4	0.751	INTRON CR44997
3R	22031564	3R_22031564_SNP [dm3] 3R_26205842_SNP [dm6]	C	T	3.193e^-4	0.751	INTRON CR44320
3R	6265316	3R_6265316_SNP [dm3] 3R_10439594_SNP [dm6]	T	C	3.193e^-4	0.751	INTERGENIC
3L	10015658	3L_10015658_SNP [dm3] 3L_10022558_SNP [dm6]	G	A	3.207e^-4	0.752	INTRON dpr6
X	22118831	X_22118831_SNP [dm3] X_22716995_SNP [dm6]	A	C	3.213e^-4	0.752	INTRON CR44997
2L	12492449	2L_12492449_SNP [dm3] 2L_12492449_SNP [dm6]	G	T	3.216e^-4	0.752	UTR_5_PRIME bun INTRON bun
X	22125020	X_22125020_SNP [dm3] X_22723184_SNP [dm6]	A	G	3.225e^-4	0.752	INTRON CR44997	transposable element FlyBase
X	14022697	X_14022697_SNP [dm3] X_14128664_SNP [dm6]	T	C	3.226e^-4	0.752	INTERGENIC
3R	14771287	3R_14771287_SNP [dm3] 3R_18945565_SNP [dm6]	C	A	3.228e^-4	0.752	INTRON CG42613
2L	9243186	2L_9243186_SNP [dm3] 2L_9243186_SNP [dm6]	G	A	3.235e^-4	0.752	SPLICE_SITE_REGION tai INTRON tai	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2264785	3L_2264785_SNP [dm3] 3L_2264785_SNP [dm6]	G	A	3.236e^-4	0.752	SYNONYMOUS_CODING ecd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	9005859	X_9005859_SNP [dm3] X_9111826_SNP [dm6]	C	A	3.241e^-4	0.752	INTRON AP-1gamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	22124765	X_22124765_SNP [dm3] X_22722929_SNP [dm6]	A	G	3.243e^-4	0.752	INTRON CR44997	transposable element FlyBase
3L	1645311	3L_1645311_DEL [dm3] 3L_1645311_DEL [dm6]	CA	C	3.243e^-4	0.752	UPSTREAM CG13919 & 1 other DOWNSTREAM CG17249 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	990180	2R_990180_SNP [dm3] 2R_5102675_SNP [dm6]	A	G	3.249e^-4	0.752	INTERGENIC	transposable element FlyBase
3R	492181	3R_492181_SNP [dm3] 3R_4666459_SNP [dm6]	C	A	3.250e^-4	0.752	INTRON CG43427
3R	18293996	3R_18293996_SNP [dm3] 3R_22468274_SNP [dm6]	T	C	3.254e^-4	0.752	UPSTREAM Nrx-1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	7719829	2R_7719829_SNP [dm3] 2R_11832324_SNP [dm6]	C	T	3.259e^-4	0.752	INTRON Sobp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8385503	2L_8385503_SNP [dm3] 2L_8385503_SNP [dm6]	A	T	3.263e^-4	0.752	UPSTREAM CG13384 INTRON CG13384	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17124092	2R_17124092_INS [dm3] 2R_21236587_INS [dm6]	A	ACA	3.270e^-4	0.752	INTRON ASPP	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11397302	2R_11397302_INS [dm3] 2R_15509797_INS [dm6]	A	AA	3.276e^-4	0.752	INTERGENIC
X	22116424	X_22116424_SNP [dm3] X_22714588_SNP [dm6]	G	A	3.279e^-4	0.752	INTRON CR44997	transposable element FlyBase
3R	22130235	3R_22130235_SNP [dm3] 3R_26304513_SNP [dm6]	A	G	3.288e^-4	0.752	INTERGENIC
2L	13820867	2L_13820867_SNP [dm3] 2L_13820867_SNP [dm6]	A	G	3.299e^-4	0.752	UPSTREAM b INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	7315538	3R_7315538_SNP [dm3] 3R_11489816_SNP [dm6]	C	T	3.305e^-4	0.752	INTERGENIC
X	21909380	X_21909380_SNP [dm3] X_22507544_SNP [dm6]	G	A	3.315e^-4	0.752	UTR_3_PRIME l_1_G0196
2L	6459334	2L_6459334_SNP [dm3] 2L_6459334_SNP [dm6]	A	G	3.323e^-4	0.752	UTR_3_PRIME CG16947 DOWNSTREAM frj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad
3L	2881075	3L_2881075_SNP [dm3] 3L_2881075_SNP [dm6]	A	C	3.325e^-4	0.752	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9393432	2L_9393432_SNP [dm3] 2L_9393432_SNP [dm6]	T	C	3.327e^-4	0.752	INTRON Shawl
3L	1134655	3L_1134655_SNP [dm3] 3L_1134655_SNP [dm6]	T	C	3.328e^-4	0.752	INTERGENIC	regulatory region REDfly_CRMs
3L	834113	3L_834113_SNP [dm3] 3L_834113_SNP [dm6]	C	T	3.330e^-4	0.752	UTR_5_PRIME CG42553 UPSTREAM snoRNA:Psi18S-1086 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2L	17561663	2L_17561663_SNP [dm3] 2L_17561663_SNP [dm6]	C	A	3.340e^-4	0.752	INTERGENIC
X	22116694	X_22116694_SNP [dm3] X_22714858_SNP [dm6]	C	G	3.343e^-4	0.752	INTRON CR44997	transposable element FlyBase
X	21037681	X_21037681_SNP [dm3] X_21166654_SNP [dm6]	T	C	3.347e^-4	0.752	INTERGENIC
2L	9206190	2L_9206190_SNP [dm3] 2L_9206190_SNP [dm6]	A	G	3.353e^-4	0.752	INTRON tai	TF binding site BDTNP1_TFBS_dl
X	19715390	X_19715390_SNP [dm3] X_19821357_SNP [dm6]	T	C	3.355e^-4	0.752	INTERGENIC
2L	10724762	2L_10724762_SNP [dm3] 2L_10724762_SNP [dm6]	T	C	3.356e^-4	0.752	UPSTREAM CG6431 INTRON CG6431
3R	4465210	3R_4465210_SNP [dm3] 3R_8639488_SNP [dm6]	T	A	3.357e^-4	0.752	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	22819841	3R_22819841_DEL [dm3] 3R_26994119_DEL [dm6]	TTTCGTATTTCCCGTT...	T	3.359e^-4	0.752	UPSTREAM TwdlC INTERGENIC
2L	2315248	2L_2315248_SNP [dm3] 2L_2315248_SNP [dm6]	T	C	3.360e^-4	0.752	INTRON CG9967 & 1 other
3R	11423706	3R_11423706_SNP [dm3] 3R_15597984_SNP [dm6]	C	G	3.360e^-4	0.752	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	3358413	3L_3358413_SNP [dm3] 3L_3358413_SNP [dm6]	C	T	3.361e^-4	0.752	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
2R	6524846	2R_6524846_SNP [dm3] 2R_10637341_SNP [dm6]	G	C	3.368e^-4	0.752	INTRON CG11883
2L	7851086	2L_7851086_SNP [dm3] 2L_7851086_SNP [dm6]	C	T	3.384e^-4	0.752	INTRON CG14535
X	22110337	X_22110337_SNP [dm3] X_22708501_SNP [dm6]	T	A	3.389e^-4	0.752	INTRON CR44997
2L	4340920	2L_4340920_SNP [dm3] 2L_4340920_SNP [dm6]	G	A	3.394e^-4	0.752	INTRON Atet
3L	2538015	3L_2538015_SNP [dm3] 3L_2538015_SNP [dm6]	G	C	3.395e^-4	0.752	INTRON Spn
2L	5389190	2L_5389190_SNP [dm3] 2L_5389190_SNP [dm6]	A	T	3.398e^-4	0.752	DOWNSTREAM CR44745 INTERGENIC
3R	6661476	3R_6661476_SNP [dm3] 3R_10835754_SNP [dm6]	G	A	3.404e^-4	0.752	INTRON Cad86C
2R	10563294	2R_10563294_SNP [dm3] 2R_14675789_SNP [dm6]	G	A	3.404e^-4	0.752	NON_SYNONYMOUS_CODING CG30480 UTR_5_PRIME CG30479 UPSTREAM CG30479 INTRON mspo	TF binding site mE1_TFBS_sens
3L	3494379	3L_3494379_SNP [dm3] 3L_3494379_SNP [dm6]	C	A	3.415e^-4	0.752	INTRON CG42324	TF binding site mE1_TFBS_inv
X	4190954	X_4190954_SNP [dm3] X_4296921_SNP [dm6]	C	T	3.419e^-4	0.752	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7602968	3R_7602968_SNP [dm3] 3R_11777246_SNP [dm6]	G	A	3.429e^-4	0.752	INTRON l_3_neo38	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	22063917	X_22063917_SNP [dm3] X_22662081_SNP [dm6]	C	T	3.429e^-4	0.752	INTRON CR44997
2L	11029586	2L_11029586_SNP [dm3] 2L_11029586_SNP [dm6]	C	T	3.430e^-4	0.752	SYNONYMOUS_CODING Samuel UTR_3_PRIME Samuel	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19216172	2R_19216172_SNP [dm3] 2R_23328649_SNP [dm6]	T	A	3.432e^-4	0.752	DOWNSTREAM CG30413 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14669911	3L_14669911_SNP [dm3] 3L_14676811_SNP [dm6]	G	C	3.444e^-4	0.752	INTRON ome & 1 other
X	22135055	X_22135055_SNP [dm3] X_22733219_SNP [dm6]	G	A	3.446e^-4	0.752	INTRON CR44997
2L	9253421	2L_9253421_MNP [dm3] 2L_9253421_MNP [dm6]	CCC	GAA	3.449e^-4	0.752	UPSTREAM borr DOWNSTREAM lectin-30A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	1026105	2L_1026105_SNP [dm3] 2L_1026105_SNP [dm6]	A	G	3.449e^-4	0.752	UTR_3_PRIME CG4375 INTRON IA-2
X	22107492	X_22107492_SNP [dm3] X_22705656_SNP [dm6]	A	T	3.457e^-4	0.752	INTRON CR44997	transposable element FlyBase
X	22107520	X_22107520_SNP [dm3] X_22705684_SNP [dm6]	C	A	3.464e^-4	0.752	INTRON CR44997	transposable element FlyBase
3R	26649828	3R_26649828_SNP [dm3] 3R_30824106_SNP [dm6]	G	A	3.473e^-4	0.752	INTRON cindr	TF binding site mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA
X	22236820	X_22236820_SNP [dm3] X_22834984_SNP [dm6]	C	T	3.473e^-4	0.752	INTRON fog & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	18295304	3R_18295304_SNP [dm3] 3R_22469582_SNP [dm6]	G	A	3.474e^-4	0.752	UTR_5_PRIME Nrx-1 INTRON Nrx-1
3L	7217041	3L_7217041_SNP [dm3] 3L_7223941_SNP [dm6]	A	C	3.479e^-4	0.752	DOWNSTREAM CR45410 INTERGENIC
2L	3438942	2L_3438942_DEL [dm3] 2L_3438942_DEL [dm6]	TGTTAGCT	T	3.482e^-4	0.752	INTERGENIC
2L	1864849	2L_1864849_SNP [dm3] 2L_1864849_SNP [dm6]	C	T	3.487e^-4	0.752	INTRON CG31663
3R	14194726	3R_14194726_SNP [dm3] 3R_18369004_SNP [dm6]	G	A	3.489e^-4	0.752	UTR_3_PRIME gl INTRON gl
2L	15507237	2L_15507237_SNP [dm3] 2L_15507237_SNP [dm6]	C	G	3.489e^-4	0.752	INTERGENIC
X	18372879	X_18372879_INS [dm3] X_18478846_INS [dm6]	G	GA	3.493e^-4	0.752	INTRON CG32547
3L	8419500	3L_8419500_SNP [dm3] 3L_8426400_SNP [dm6]	T	G	3.493e^-4	0.752	SPLICE_SITE_REGION Cbl INTRON Cbl
X	22142512	X_22142512_SNP [dm3] X_22740676_SNP [dm6]	G	A	3.497e^-4	0.752	INTRON CR44997
2L	2001891	2L_2001891_SNP [dm3] 2L_2001891_SNP [dm6]	C	T	3.501e^-4	0.752	INTRON CG33543 EXON CR43464
3L	8440660	3L_8440660_SNP [dm3] 3L_8447560_SNP [dm6]	G	A	3.504e^-4	0.752	INTRON CG6983
3L	6324577	3L_6324577_SNP [dm3] 3L_6331477_SNP [dm6]	G	T	3.510e^-4	0.752	SYNONYMOUS_CODING CG13300	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	603662	2L_603662_SNP [dm3] 2L_603662_SNP [dm6]	T	G	3.512e^-4	0.752	UTR_3_PRIME CG13689 DOWNSTREAM CG13689
2L	11774503	2L_11774503_SNP [dm3] 2L_11774503_SNP [dm6]	C	T	3.512e^-4	0.752	INTERGENIC
3R	25074561	3R_25074561_SNP [dm3] 3R_29248839_SNP [dm6]	C	G	3.514e^-4	0.752	UTR_5_PRIME SP1029 INTRON SP1029
3L	2858594	3L_2858594_DEL [dm3] 3L_2858594_DEL [dm6]	ATA	A	3.518e^-4	0.752	INTRON CG43444	insulator Insulator_Class_II.mE01
3L	2759157	3L_2759157_SNP [dm3] 3L_2759157_SNP [dm6]	G	T	3.521e^-4	0.752	INTRON Mrtf
2L	12575996	2L_12575996_SNP [dm3] 2L_12575996_SNP [dm6]	C	A	3.531e^-4	0.752	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9487230	2R_9487230_SNP [dm3] 2R_13599725_SNP [dm6]	C	T	3.546e^-4	0.752	DOWNSTREAM S-Lap5 & 1 other INTERGENIC
2R	4484407	2R_4484407_SNP [dm3] 2R_8596902_SNP [dm6]	A	G	3.549e^-4	0.752	DOWNSTREAM CG8735 INTERGENIC
2R	9660961	2R_9660961_SNP [dm3] 2R_13773456_SNP [dm6]	A	C	3.551e^-4	0.752	INTRON Cpr50Ca	TF binding site mE1_TFBS_inv
3R	13847766	3R_13847766_SNP [dm3] 3R_18022044_SNP [dm6]	C	A	3.552e^-4	0.752	DOWNSTREAM DNaseII INTRON CG7785	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2L	6684126	2L_6684126_SNP [dm3] 2L_6684126_SNP [dm6]	A	C	3.555e^-4	0.752	UTR_5_PRIME Nhe3 UPSTREAM Nhe3 DOWNSTREAM CG11327	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Stat92E
X	16373113	X_16373113_SNP [dm3] X_16479080_SNP [dm6]	C	T	3.556e^-4	0.752	INTRON para
3R	22813954	3R_22813954_SNP [dm3] 3R_26988232_SNP [dm6]	T	C	3.556e^-4	0.752	UPSTREAM CG31075 DOWNSTREAM CG31076 INTRON CG31075
3R	10442039	3R_10442039_SNP [dm3] 3R_14616317_SNP [dm6]	A	G	3.557e^-4	0.752	INTRON CG14853
2L	6765821	2L_6765821_SNP [dm3] 2L_6765821_SNP [dm6]	T	C	3.565e^-4	0.752	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_cad
2L	12192325	2L_12192325_SNP [dm3] 2L_12192325_SNP [dm6]	A	T	3.568e^-4	0.752	INTRON aret
3L	17923595	3L_17923595_SNP [dm3] 3L_17930495_SNP [dm6]	C	A	3.570e^-4	0.752	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3L	6632043	3L_6632043_INS [dm3] 3L_6638943_INS [dm6]	A	ACA	3.570e^-4	0.752	INTERGENIC
2R	18162788	2R_18162788_SNP [dm3] 2R_22275283_SNP [dm6]	A	G	3.571e^-4	0.752	INTRON dve	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	16792967	X_16792967_SNP [dm3] X_16898934_SNP [dm6]	A	G	3.571e^-4	0.752	INTERGENIC
3L	16633968	3L_16633968_SNP [dm3] 3L_16640868_SNP [dm6]	G	A	3.579e^-4	0.753	INTRON Abl
3R	11249141	3R_11249141_SNP [dm3] 3R_15423419_SNP [dm6]	G	A	3.587e^-4	0.753	NON_SYNONYMOUS_CODING CG6118	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	22126563	X_22126563_SNP [dm3] X_22724727_SNP [dm6]	C	A	3.596e^-4	0.754	INTRON CR44997
2R	17584825	2R_17584825_INS [dm3] 2R_21697320_INS [dm6]	G	ATGTA	3.603e^-4	0.754	UPSTREAM CngB DOWNSTREAM HmgZ INTERGENIC
3R	18162284	3R_18162284_SNP [dm3] 3R_22336562_SNP [dm6]	T	C	3.613e^-4	0.754	DOWNSTREAM CG5388 INTRON CG5388	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2077675	3L_2077675_SNP [dm3] 3L_2077675_SNP [dm6]	C	T	3.615e^-4	0.754	NON_SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16471467	2R_16471467_SNP [dm3] 2R_20583962_SNP [dm6]	A	G	3.619e^-4	0.754	UPSTREAM qsm & 2 others DOWNSTREAM mir-312 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
2L	6765509	2L_6765509_SNP [dm3] 2L_6765509_SNP [dm6]	C	T	3.621e^-4	0.754	SYNONYMOUS_CODING CG11321
2L	2247418	2L_2247418_SNP [dm3] 2L_2247418_SNP [dm6]	T	C	3.626e^-4	0.754	DOWNSTREAM CR42859 INTERGENIC
3L	5207520	3L_5207520_SNP [dm3] 3L_5214420_SNP [dm6]	A	G	3.636e^-4	0.754	INTRON shep
3L	17923591	3L_17923591_SNP [dm3] 3L_17930491_SNP [dm6]	G	T	3.637e^-4	0.754	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3L	15440588	3L_15440588_INS [dm3] 3L_15447488_INS [dm6]	A	AGATA	3.638e^-4	0.754	INTERGENIC
X	6623812	X_6623812_SNP [dm3] X_6729779_SNP [dm6]	T	A	3.646e^-4	0.754	INTRON CG3168
2L	19326493	2L_19326493_SNP [dm3] 2L_19326493_SNP [dm6]	T	G	3.647e^-4	0.754	UPSTREAM CR45258 DOWNSTREAM CR45700 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	8743558	3R_8743558_SNP [dm3] 3R_12917836_SNP [dm6]	G	A	3.647e^-4	0.754	INTRON beat-Vb
3R	3961313	3R_3961313_SNP [dm3] 3R_8135591_SNP [dm6]	C	T	3.650e^-4	0.754	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
X	22111874	X_22111874_SNP [dm3] X_22710038_SNP [dm6]	G	A	3.654e^-4	0.754	INTRON CR44997	transposable element FlyBase
2L	11253228	2L_11253228_SNP [dm3] 2L_11253228_SNP [dm6]	C	T	3.655e^-4	0.754	INTRON ab
X	7126346	X_7126346_SNP [dm3] X_7232313_SNP [dm6]	T	A	3.660e^-4	0.754	INTRON CR44357 & 1 other	TF binding site mE1_TFBS_chinmo
X	22110471	X_22110471_SNP [dm3] X_22708635_SNP [dm6]	A	G	3.668e^-4	0.754	INTRON CR44997
2R	12372174	2R_12372174_SNP [dm3] 2R_16484669_SNP [dm6]	T	A	3.669e^-4	0.754	DOWNSTREAM CG15712 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5650972	3R_5650972_SNP [dm3] 3R_9825250_SNP [dm6]	T	C	3.669e^-4	0.754	UPSTREAM CR42858 DOWNSTREAM Teh1 INTERGENIC	TF binding site mE1_TFBS_cad
3L	2550337	3L_2550337_SNP [dm3] 3L_2550337_SNP [dm6]	T	A	3.674e^-4	0.754	INTRON Spn
2L	862947	2L_862947_SNP [dm3] 2L_862947_SNP [dm6]	T	G	3.678e^-4	0.754	SYNONYMOUS_CODING aru	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19719857	2R_19719857_SNP [dm3] 2R_23832334_SNP [dm6]	T	C	3.680e^-4	0.754	INTRON CG5549
X	7331771	X_7331771_SNP [dm3] X_7437738_SNP [dm6]	C	G	3.693e^-4	0.755	INTERGENIC
2R	3420212	2R_3420212_SNP [dm3] 2R_7532707_SNP [dm6]	G	A	3.704e^-4	0.756	UPSTREAM Cyt-b5 DOWNSTREAM CR44209 INTRON Drat	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11694641	2R_11694641_SNP [dm3] 2R_15807136_SNP [dm6]	A	G	3.710e^-4	0.756	INTRON tun & 1 other
3L	1106633	3L_1106633_SNP [dm3] 3L_1106633_SNP [dm6]	C	A	3.710e^-4	0.756	INTERGENIC
3L	8419499	3L_8419499_SNP [dm3] 3L_8426399_SNP [dm6]	A	C	3.715e^-4	0.757	SPLICE_SITE_REGION Cbl INTRON Cbl
2L	5389340	2L_5389340_SNP [dm3] 2L_5389340_SNP [dm6]	T	A	3.728e^-4	0.757	DOWNSTREAM CR44745 INTERGENIC
2L	2315230	2L_2315230_SNP [dm3] 2L_2315230_SNP [dm6]	T	C	3.734e^-4	0.757	INTRON CG9967 & 1 other
X	22115706	X_22115706_SNP [dm3] X_22713870_SNP [dm6]	A	C	3.748e^-4	0.757	INTRON CR44997
X	22133997	X_22133997_SNP [dm3] X_22732161_SNP [dm6]	T	C	3.748e^-4	0.757	INTRON CR44997	TF binding site mE1_TFBS_HSA
3L	15991042	3L_15991042_SNP [dm3] 3L_15997942_SNP [dm6]	T	G	3.750e^-4	0.757	INTRON CG5830
X	22105866	X_22105866_SNP [dm3] X_22704030_SNP [dm6]	T	C	3.752e^-4	0.757	INTRON CR44997	transposable element FlyBase
2R	3419835	2R_3419835_SNP [dm3] 2R_7532330_SNP [dm6]	C	T	3.753e^-4	0.757	DOWNSTREAM CR44209 INTRON Drat	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1645835	3L_1645835_SNP [dm3] 3L_1645835_SNP [dm6]	G	A	3.757e^-4	0.757	SYNONYMOUS_CODING CG13919 UPSTREAM alphaCOP DOWNSTREAM CG17249	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17585106	2R_17585106_SNP [dm3] 2R_21697601_SNP [dm6]	G	A	3.758e^-4	0.757	UTR_3_PRIME HmgZ UPSTREAM CngB DOWNSTREAM HmgZ
2L	13312323	2L_13312323_SNP [dm3] 2L_13312323_SNP [dm6]	A	C	3.758e^-4	0.757	INTRON CG43778
2R	8327481	2R_8327481_DEL [dm3] 2R_12439976_DEL [dm6]	AA	A	3.759e^-4	0.757	DOWNSTREAM CG30334 INTRON Dyb
X	14022685	X_14022685_SNP [dm3] X_14128652_SNP [dm6]	A	T	3.770e^-4	0.757	INTERGENIC
2L	925292	2L_925292_DEL [dm3] 2L_925292_DEL [dm6]	GGGGCTGTGC	G	3.772e^-4	0.757	INTRON CG4341
3R	2347175	3R_2347175_SNP [dm3] 3R_6521453_SNP [dm6]	G	A	3.774e^-4	0.757	INTERGENIC
X	14816550	X_14816550_SNP [dm3] X_14922517_SNP [dm6]	T	A	3.776e^-4	0.757	INTRON Flo2 & 1 other
X	22106502	X_22106502_SNP [dm3] X_22704666_SNP [dm6]	A	T	3.786e^-4	0.758	INTRON CR44997	transposable element FlyBase
3L	1647701	3L_1647701_SNP [dm3] 3L_1647701_SNP [dm6]	T	C	3.793e^-4	0.758	UPSTREAM Bro & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	11249122	3R_11249122_SNP [dm3] 3R_15423400_SNP [dm6]	T	G	3.796e^-4	0.758	SYNONYMOUS_CODING CG6118	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19360308	2L_19360308_SNP [dm3] 2L_19360308_SNP [dm6]	A	G	3.802e^-4	0.759	INTRON dnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	11491584	2R_11491584_SNP [dm3] 2R_15604079_SNP [dm6]	C	T	3.813e^-4	0.76	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	22136220	X_22136220_SNP [dm3] X_22734384_SNP [dm6]	T	C	3.838e^-4	0.761	INTRON CR44997
3R	25668292	3R_25668292_SNP [dm3] 3R_29842570_SNP [dm6]	G	A	3.839e^-4	0.761	INTRON Cad99C
X	22135899	X_22135899_SNP [dm3] X_22734063_SNP [dm6]	G	A	3.839e^-4	0.761	INTRON CR44997
X	22112907	X_22112907_SNP [dm3] X_22711071_SNP [dm6]	T	A	3.842e^-4	0.761	INTRON CR44997	transposable element FlyBase
2L	12547227	2L_12547227_SNP [dm3] 2L_12547227_SNP [dm6]	A	G	3.848e^-4	0.761	UPSTREAM bun INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
2L	7808232	2L_7808232_SNP [dm3] 2L_7808232_SNP [dm6]	G	T	3.864e^-4	0.761	INTRON cdc14	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	9635381	X_9635381_SNP [dm3] X_9741348_SNP [dm6]	A	T	3.864e^-4	0.761	INTRON Sp1
2L	17767428	2L_17767428_SNP [dm3] 2L_17767428_SNP [dm6]	A	G	3.866e^-4	0.761	INTRON CadN	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25234468	3R_25234468_SNP [dm3] 3R_29408746_SNP [dm6]	G	T	3.867e^-4	0.761	INTRON Ptp99A	TF binding site mE1_TFBS_inv
X	280398	X_280398_SNP [dm3] X_386365_SNP [dm6]	T	G	3.869e^-4	0.761	DOWNSTREAM CR44752 INTRON CG32816
2L	11867294	2L_11867294_SNP [dm3] 2L_11867294_SNP [dm6]	A	C	3.871e^-4	0.761	INTRON Pde1c
3L	2160456	3L_2160456_SNP [dm3] 3L_2160456_SNP [dm6]	A	T	3.872e^-4	0.761	SPLICE_SITE_REGION CG15822 INTRON CG15822
2L	12361567	2L_12361567_SNP [dm3] 2L_12361567_SNP [dm6]	C	A	3.872e^-4	0.761	INTRON bru-2	TF binding site BDTNP1_TFBS_twi
2L	14975050	2L_14975050_SNP [dm3] 2L_14975050_SNP [dm6]	C	T	3.881e^-4	0.761	DOWNSTREAM mol & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1647129	3L_1647129_SNP [dm3] 3L_1647129_SNP [dm6]	A	G	3.890e^-4	0.761	NON_SYNONYMOUS_CODING CG17249 UPSTREAM Bro	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	14637303	3L_14637303_SNP [dm3] 3L_14644203_SNP [dm6]	C	T	3.890e^-4	0.761	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	19079990	2R_19079990_SNP [dm3] 2R_23192467_SNP [dm6]	C	G	3.893e^-4	0.761	INTRON CG34371	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	22111433	X_22111433_INS [dm3] X_22709597_INS [dm6]	G	GAG	3.898e^-4	0.761	INTRON CR44997	transposable element FlyBase
X	12381376	X_12381376_SNP [dm3] X_12487343_SNP [dm6]	T	G	3.901e^-4	0.761	INTRON Cpr11A
2R	17845543	2R_17845543_SNP [dm3] 2R_21958038_SNP [dm6]	C	T	3.901e^-4	0.761	INTERGENIC
X	22136015	X_22136015_SNP [dm3] X_22734179_SNP [dm6]	T	A	3.906e^-4	0.762	INTRON CR44997
2R	17771822	2R_17771822_SNP [dm3] 2R_21884317_SNP [dm6]	A	T	3.910e^-4	0.762	INTRON Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21043446	X_21043446_DEL [dm3] X_21172419_DEL [dm6]	AT	A	3.921e^-4	0.762	INTERGENIC	transposable element FlyBase
3L	15896825	3L_15896825_SNP [dm3] 3L_15903725_SNP [dm6]	T	A	3.923e^-4	0.762	INTRON sff
X	11522718	X_11522718_DEL [dm3] X_11628685_DEL [dm6]	TT	A	3.924e^-4	0.762	INTRON Ptp10D
2L	5244841	2L_5244841_SNP [dm3] 2L_5244841_SNP [dm6]	A	T	3.927e^-4	0.762	UPSTREAM tkv DOWNSTREAM CR14033 INTRON tkv
X	18998866	X_18998866_INS [dm3] X_19104833_INS [dm6]	G	GGG	3.931e^-4	0.762	INTERGENIC
3R	11496671	3R_11496671_SNP [dm3] 3R_15670949_SNP [dm6]	G	A	3.940e^-4	0.762	INTRON pxb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8942553	2R_8942553_SNP [dm3] 2R_13055048_SNP [dm6]	A	C	3.943e^-4	0.762	DOWNSTREAM Drl-2 INTERGENIC
2R	10307630	2R_10307630_INS [dm3] 2R_14420125_INS [dm6]	G	GTTG	3.948e^-4	0.762	UPSTREAM CG17386 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	14658889	2R_14658889_SNP [dm3] 2R_18771384_SNP [dm6]	G	A	3.949e^-4	0.762	UPSTREAM Mctp INTRON Mctp
3L	3494443	3L_3494443_SNP [dm3] 3L_3494443_SNP [dm6]	G	T	3.963e^-4	0.762	INTRON CG42324	TF binding site mE1_TFBS_inv
2R	19240872	2R_19240872_SNP [dm3] 2R_23353349_SNP [dm6]	C	A	3.964e^-4	0.762	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	5441216	X_5441216_SNP [dm3] X_5547183_SNP [dm6]	C	T	3.964e^-4	0.762	INTRON Vsx2	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	18430837	3R_18430837_SNP [dm3] 3R_22605115_SNP [dm6]	T	C	3.972e^-4	0.762	INTRON Efa6
2L	8184449	2L_8184449_SNP [dm3] 2L_8184449_SNP [dm6]	A	T	3.972e^-4	0.762	INTRON Piezo
2R	8877347	2R_8877347_SNP [dm3] 2R_12989842_SNP [dm6]	G	T	3.976e^-4	0.762	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	834109	3L_834109_SNP [dm3] 3L_834109_SNP [dm6]	T	C	3.979e^-4	0.762	UTR_5_PRIME CG42553 UPSTREAM snoRNA:Psi18S-1086 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2R	19690202	2R_19690202_SNP [dm3] 2R_23802679_SNP [dm6]	G	T	3.985e^-4	0.763	UTR_3_PRIME CG30177
2R	6390112	2R_6390112_SNP [dm3] 2R_10502607_SNP [dm6]	C	T	4.001e^-4	0.765	INTRON lola
3R	19082185	3R_19082185_SNP [dm3] 3R_23256463_SNP [dm6]	C	T	4.012e^-4	0.766	INTRON wda	TF binding site mE1_TFBS_cad
X	5440946	X_5440946_SNP [dm3] X_5546913_SNP [dm6]	T	C	4.031e^-4	0.768	NON_SYNONYMOUS_CODING Vsx2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2145671	2L_2145671_SNP [dm3] 2L_2145671_SNP [dm6]	C	T	4.031e^-4	0.768	UTR_3_PRIME CG11723 UPSTREAM tho2	TF binding site BDTNP1_TFBS_dl
X	22138215	X_22138215_SNP [dm3] X_22736379_SNP [dm6]	G	T	4.032e^-4	0.768	INTRON CR44997
3R	10836834	3R_10836834_SNP [dm3] 3R_15011112_SNP [dm6]	C	A	4.037e^-4	0.768	INTERGENIC
3R	14489801	3R_14489801_SNP [dm3] 3R_18664079_SNP [dm6]	G	A	4.043e^-4	0.768	UPSTREAM Cpsf73 INTRON Gos28	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	9701578	3L_9701578_SNP [dm3] 3L_9708478_SNP [dm6]	G	T	4.051e^-4	0.769	INTRON CG16711	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17841647	2R_17841647_DEL [dm3] 2R_21954142_DEL [dm6]	TT	T	4.061e^-4	0.769	UPSTREAM CR43405 DOWNSTREAM CG13494 INTERGENIC
3L	14128291	3L_14128291_SNP [dm3] 3L_14135191_SNP [dm6]	T	G	4.061e^-4	0.769	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18321426	2R_18321426_SNP [dm3] 2R_22433921_SNP [dm6]	A	T	4.071e^-4	0.769	INTERGENIC
X	5230466	X_5230466_SNP [dm3] X_5336433_SNP [dm6]	A	G	4.072e^-4	0.769	INTERGENIC
2L	19384042	2L_19384042_SNP [dm3] 2L_19384042_SNP [dm6]	C	T	4.073e^-4	0.769	NON_SYNONYMOUS_CODING fon DOWNSTREAM CG17350	TF binding site mE1_TFBS_chinmo
2L	14112840	2L_14112840_SNP [dm3] 2L_14112840_SNP [dm6]	A	C	4.075e^-4	0.769	INTERGENIC
2L	4590794	2L_4590794_SNP [dm3] 2L_4590794_SNP [dm6]	G	C	4.084e^-4	0.77	INTRON dp
X	22112910	X_22112910_SNP [dm3] X_22711074_SNP [dm6]	T	G	4.089e^-4	0.77	INTRON CR44997	transposable element FlyBase
2L	2272988	2L_2272988_SNP [dm3] 2L_2272988_SNP [dm6]	C	T	4.095e^-4	0.77	INTRON CR43753
3R	10837258	3R_10837258_SNP [dm3] 3R_15011536_SNP [dm6]	T	C	4.101e^-4	0.77	INTERGENIC
3R	22021849	3R_22021849_SNP [dm3] 3R_26196127_SNP [dm6]	G	C	4.107e^-4	0.77	INTRON CR44320
2R	16890290	2R_16890290_SNP [dm3] 2R_21002785_SNP [dm6]	C	G	4.111e^-4	0.77	NON_SYNONYMOUS_CODING CG10543	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

mn_AlcoholSens_E2 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results