DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.568e^-6)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2121 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	8128550	3R_8128550_SNP [dm3] 3R_12302828_SNP [dm6]	T	C	1.652e^-7	0.31	DOWNSTREAM svp INTERGENIC	TF binding site mE1_TFBS_inv
3L	16513351	3L_16513351_SNP [dm3] 3L_16520251_SNP [dm6]	A	T	1.416e^-6	0.685	NON_SYNONYMOUS_CODING CG43373
2R	19299817	2R_19299817_SNP [dm3] 2R_23412294_SNP [dm6]	A	T	1.467e^-6	0.685	DOWNSTREAM CG9812 INTERGENIC
2R	13059213	2R_13059213_SNP [dm3] 2R_17171708_SNP [dm6]	C	T	1.495e^-6	0.685	INTERGENIC
2L	14229302	2L_14229302_SNP [dm3] 2L_14229302_SNP [dm6]	T	C	1.827e^-6	0.685	INTRON Dyrk2	TF binding site BDTNP1_TFBS_twi
2L	14189445	2L_14189445_SNP [dm3] 2L_14189445_SNP [dm6]	A	C	3.800e^-6	0.824	INTRON Dyrk2
3R	2078773	3R_2078773_SNP [dm3] 3R_6253051_SNP [dm6]	A	G	3.983e^-6	0.824	INTERGENIC
3L	15712055	3L_15712055_SNP [dm3] 3L_15718955_SNP [dm6]	A	C	4.430e^-6	0.824	INTRON CG42570
2L	11447080	2L_11447080_SNP [dm3] 2L_11447080_SNP [dm6]	A	G	4.609e^-6	0.824	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	2527559	3L_2527559_SNP [dm3] 3L_2527559_SNP [dm6]	T	A	5.036e^-6	0.824	UPSTREAM CG32295 INTRON Spn
3L	11851748	3L_11851748_SNP [dm3] 3L_11858648_SNP [dm6]	A	G	8.215e^-6	0.824	INTRON CG44837
2R	17295831	2R_17295831_SNP [dm3] 2R_21408326_SNP [dm6]	A	T	9.436e^-6	0.824	INTRON Sdc
3L	2180898	3L_2180898_SNP [dm3] 3L_2180898_SNP [dm6]	A	C	9.655e^-6	0.824	INTERGENIC
2L	7895345	2L_7895345_SNP [dm3] 2L_7895345_SNP [dm6]	A	G	1.060e^-5	0.824	SYNONYMOUS_CODING Snoo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11462465	3R_11462465_DEL [dm3] 3R_15636743_DEL [dm6]	TGA	T	1.101e^-5	0.824	UPSTREAM CG43336 DOWNSTREAM CG43335 INTERGENIC
3L	21967948	3L_21967948_SNP [dm3] 3L_21974848_SNP [dm6]	T	C	1.109e^-5	0.824	INTRON CG7470
2R	1010456	2R_1010456_SNP [dm3] 2R_5122951_SNP [dm6]	T	G	1.139e^-5	0.824	UPSTREAM gus INTRON gus	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3R	11462478	3R_11462478_DEL [dm3] 3R_15636756_DEL [dm6]	AAAACCAA	C	1.158e^-5	0.824	UPSTREAM CG43336 DOWNSTREAM CG43335 INTERGENIC
3R	14051625	3R_14051625_SNP [dm3] 3R_18225903_SNP [dm6]	G	T	1.159e^-5	0.824	SPLICE_SITE_REGION CG7168 UTR_5_PRIME CG7168 UPSTREAM Mdh2 DOWNSTREAM CG7993	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	14138085	2R_14138085_SNP [dm3] 2R_18250580_SNP [dm6]	C	G	1.192e^-5	0.824	INTERGENIC	TF binding site mE1_TFBS_cad
3L	16512951	3L_16512951_SNP [dm3] 3L_16519851_SNP [dm6]	C	T	1.235e^-5	0.824	INTRON CG43373
2R	1010541	2R_1010541_SNP [dm3] 2R_5123036_SNP [dm6]	T	A	1.259e^-5	0.824	UPSTREAM gus INTRON gus	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_zfh1
3R	2048107	3R_2048107_SNP [dm3] 3R_6222385_SNP [dm6]	C	A	1.293e^-5	0.824	UPSTREAM Osi4 INTERGENIC	TF binding site mE1_TFBS_cad
2L	3750808	2L_3750808_SNP [dm3] 2L_3750808_SNP [dm6]	C	T	1.296e^-5	0.824	NON_SYNONYMOUS_CODING CG10019
2L	11446994	2L_11446994_SNP [dm3] 2L_11446994_SNP [dm6]	G	T	1.354e^-5	0.824	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	10011636	2L_10011636_SNP [dm3] 2L_10011636_SNP [dm6]	G	C	1.361e^-5	0.824	SYNONYMOUS_CODING Trp1
3R	25095068	3R_25095068_SNP [dm3] 3R_29269346_SNP [dm6]	G	C	1.363e^-5	0.824	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	11447052	2L_11447052_SNP [dm3] 2L_11447052_SNP [dm6]	T	C	1.454e^-5	0.824	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	910429	2R_910429_SNP [dm3] 2R_5022924_SNP [dm6]	A	T	1.457e^-5	0.824	DOWNSTREAM Ir41a INTERGENIC	transposable element FlyBase
X	18890885	X_18890885_SNP [dm3] X_18996852_SNP [dm6]	C	A	1.489e^-5	0.824	INTRON CG43759	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16723655	3L_16723655_SNP [dm3] 3L_16730555_SNP [dm6]	C	T	1.513e^-5	0.824	SYNONYMOUS_CODING Dbp73D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19301229	2R_19301229_SNP [dm3] 2R_23413706_SNP [dm6]	C	G	1.594e^-5	0.824	NON_SYNONYMOUS_CODING CG9812 INTRON CG9812
2L	20025356	2L_20025356_SNP [dm3] 2L_20025356_SNP [dm6]	C	T	1.608e^-5	0.824	SYNONYMOUS_CODING CG10659
X	14861037	X_14861037_SNP [dm3] X_14967004_SNP [dm6]	G	T	1.668e^-5	0.824	INTRON eag
3L	3935799	3L_3935799_SNP [dm3] 3L_3935799_SNP [dm6]	T	C	1.689e^-5	0.824	UPSTREAM Eip63F-1 DOWNSTREAM CG10866 EXON Eip63F-2
2R	1010473	2R_1010473_SNP [dm3] 2R_5122968_SNP [dm6]	G	T	1.718e^-5	0.824	UPSTREAM gus INTRON gus	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
2R	14469945	2R_14469945_SNP [dm3] 2R_18582440_SNP [dm6]	T	C	1.729e^-5	0.824	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	2528240	3L_2528240_SNP [dm3] 3L_2528240_SNP [dm6]	T	C	1.783e^-5	0.824	INTRON Spn
2L	11428393	2L_11428393_SNP [dm3] 2L_11428393_SNP [dm6]	G	C	1.818e^-5	0.824	INTERGENIC
2R	1006777	2R_1006777_SNP [dm3] 2R_5119272_SNP [dm6]	A	T	1.823e^-5	0.824	INTRON gus
2L	4273735	2L_4273735_SNP [dm3] 2L_4273735_SNP [dm6]	T	A	1.841e^-5	0.824	INTERGENIC
2L	14340920	2L_14340920_SNP [dm3] 2L_14340920_SNP [dm6]	A	G	1.852e^-5	0.824	DOWNSTREAM CG15286 INTRON CG33090
3R	8128532	3R_8128532_SNP [dm3] 3R_12302810_SNP [dm6]	T	G	1.889e^-5	0.824	DOWNSTREAM svp INTERGENIC	TF binding site mE1_TFBS_inv
2R	910378	2R_910378_INS [dm3] 2R_5022873_INS [dm6]	T	TTT	1.975e^-5	0.842	DOWNSTREAM Ir41a INTERGENIC	transposable element FlyBase
3L	2527553	3L_2527553_SNP [dm3] 3L_2527553_SNP [dm6]	C	A	2.081e^-5	0.856	UPSTREAM CG32295 INTRON Spn
2L	4273700	2L_4273700_SNP [dm3] 2L_4273700_SNP [dm6]	T	A	2.131e^-5	0.856	INTERGENIC
X	16596944	X_16596944_SNP [dm3] X_16702911_SNP [dm6]	G	T	2.159e^-5	0.856	UTR_3_PRIME CG9673 UPSTREAM spheroide INTRON CG4678
2L	2790870	2L_2790870_SNP [dm3] 2L_2790870_SNP [dm6]	T	C	2.261e^-5	0.856	INTRON Syt1
2L	11447089	2L_11447089_SNP [dm3] 2L_11447089_SNP [dm6]	A	G	2.344e^-5	0.856	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	18342152	X_18342152_SNP [dm3] X_18448119_SNP [dm6]	G	A	2.458e^-5	0.856	INTRON CG32547
2R	1007471	2R_1007471_SNP [dm3] 2R_5119966_SNP [dm6]	T	C	2.475e^-5	0.856	INTRON gus
3R	2136550	3R_2136550_SNP [dm3] 3R_6310828_SNP [dm6]	G	A	2.486e^-5	0.856	NON_SYNONYMOUS_CODING CG31560 UPSTREAM Osi17	TF binding site mE1_TFBS_HSA
3R	16291477	3R_16291477_SNP [dm3] 3R_20465755_SNP [dm6]	T	G	2.599e^-5	0.856	INTRON Gfrl
3L	2529145	3L_2529145_SNP [dm3] 3L_2529145_SNP [dm6]	C	T	2.650e^-5	0.856	INTRON Spn
3L	12879726	3L_12879726_SNP [dm3] 3L_12886626_SNP [dm6]	C	T	2.661e^-5	0.856	SYNONYMOUS_CODING CG14120	TF binding site mE1_TFBS_sens
3L	9049484	3L_9049484_SNP [dm3] 3L_9056384_SNP [dm6]	A	C	2.735e^-5	0.856	INTRON Argk	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	2180921	3L_2180921_SNP [dm3] 3L_2180921_SNP [dm6]	C	T	2.738e^-5	0.856	INTERGENIC
2L	14251502	2L_14251502_SNP [dm3] 2L_14251502_SNP [dm6]	G	T	2.739e^-5	0.856	INTERGENIC
2R	1006689	2R_1006689_SNP [dm3] 2R_5119184_SNP [dm6]	T	A	2.796e^-5	0.856	INTRON gus
3R	18820775	3R_18820775_SNP [dm3] 3R_22995053_SNP [dm6]	G	A	2.830e^-5	0.856	INTRON Nha2
2L	3341783	2L_3341783_SNP [dm3] 2L_3341783_SNP [dm6]	T	C	2.894e^-5	0.856	INTRON E23
3L	5026929	3L_5026929_SNP [dm3] 3L_5026929_SNP [dm6]	G	A	2.911e^-5	0.856	INTRON Con
X	22065432	X_22065432_SNP [dm3] X_22663596_SNP [dm6]	T	G	3.059e^-5	0.856	INTRON CR44997
2L	7891779	2L_7891779_DEL [dm3] 2L_7891779_DEL [dm6]	TTA	T	3.090e^-5	0.856	UTR_3_PRIME Snoo DOWNSTREAM Snoo
X	14859579	X_14859579_SNP [dm3] X_14965546_SNP [dm6]	C	A	3.160e^-5	0.856	INTRON eag
2L	11476949	2L_11476949_INS [dm3] 2L_11476949_INS [dm6]	A	AATAC	3.179e^-5	0.856	INTERGENIC
2R	14085626	2R_14085626_SNP [dm3] 2R_18198121_SNP [dm6]	T	G	3.203e^-5	0.856	INTERGENIC
X	20232036	X_20232036_SNP [dm3] X_20361009_SNP [dm6]	T	A	3.249e^-5	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
3L	1417945	3L_1417945_SNP [dm3] 3L_1417945_SNP [dm6]	C	T	3.267e^-5	0.856	DOWNSTREAM FucTD INTRON Ptp61F	TF binding site mE1_TFBS_chinmo
2R	995096	2R_995096_SNP [dm3] 2R_5107591_SNP [dm6]	A	G	3.310e^-5	0.856	INTERGENIC	transposable element FlyBase
2R	19973965	2R_19973965_SNP [dm3] 2R_24086442_SNP [dm6]	T	C	3.329e^-5	0.856	UPSTREAM snama DOWNSTREAM CG16786 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2L	2045958	2L_2045958_SNP [dm3] 2L_2045958_SNP [dm6]	A	G	3.465e^-5	0.856	SYNONYMOUS_CODING Kebab UPSTREAM CR45298	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6933289	3L_6933289_SNP [dm3] 3L_6940189_SNP [dm6]	C	G	3.489e^-5	0.856	UPSTREAM CR45412 INTERGENIC
3R	10927978	3R_10927978_SNP [dm3] 3R_15102256_SNP [dm6]	C	G	3.512e^-5	0.856	INTRON CG42788
X	20761101	X_20761101_SNP [dm3] X_20890074_SNP [dm6]	T	A	3.667e^-5	0.856	INTRON shakB
3L	15385404	3L_15385404_SNP [dm3] 3L_15392304_SNP [dm6]	A	T	3.674e^-5	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	1006769	2R_1006769_SNP [dm3] 2R_5119264_SNP [dm6]	A	G	3.718e^-5	0.856	INTRON gus
2R	14469955	2R_14469955_SNP [dm3] 2R_18582450_SNP [dm6]	T	C	3.753e^-5	0.856	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	2111337	2L_2111337_SNP [dm3] 2L_2111337_SNP [dm6]	C	T	3.760e^-5	0.856	INTERGENIC
2L	16772839	2L_16772839_SNP [dm3] 2L_16772839_SNP [dm6]	A	G	3.766e^-5	0.856	INTRON Mhc	TF binding site BDTNP1_TFBS_twi
2R	11604223	2R_11604223_SNP [dm3] 2R_15716718_SNP [dm6]	T	G	3.774e^-5	0.856	INTERGENIC
2R	14126516	2R_14126516_SNP [dm3] 2R_18239011_SNP [dm6]	G	A	3.817e^-5	0.856	INTERGENIC	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
2R	19973832	2R_19973832_SNP [dm3] 2R_24086309_SNP [dm6]	C	T	3.915e^-5	0.856	UPSTREAM snama DOWNSTREAM CG16786 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2L	9018373	2L_9018373_SNP [dm3] 2L_9018373_SNP [dm6]	C	T	3.920e^-5	0.856	INTERGENIC
2L	11447115	2L_11447115_SNP [dm3] 2L_11447115_SNP [dm6]	A	G	3.937e^-5	0.856	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	16612197	2R_16612197_SNP [dm3] 2R_20724692_SNP [dm6]	A	G	4.004e^-5	0.856	INTRON dpr	TF binding site mE1_TFBS_sbb
2R	1006694	2R_1006694_SNP [dm3] 2R_5119189_SNP [dm6]	A	C	4.123e^-5	0.856	INTRON gus
3R	15193355	3R_15193355_SNP [dm3] 3R_19367633_SNP [dm6]	A	T	4.125e^-5	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	8631631	X_8631631_SNP [dm3] X_8737598_SNP [dm6]	C	T	4.246e^-5	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
3L	12474217	3L_12474217_SNP [dm3] 3L_12481117_SNP [dm6]	T	G	4.262e^-5	0.856	INTRON CG10663
2L	11446823	2L_11446823_SNP [dm3] 2L_11446823_SNP [dm6]	A	G	4.296e^-5	0.856	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	12859653	3L_12859653_SNP [dm3] 3L_12866553_SNP [dm6]	C	A	4.444e^-5	0.856	INTERGENIC
3R	25354138	3R_25354138_SNP [dm3] 3R_29528416_SNP [dm6]	C	T	4.455e^-5	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	2790365	2L_2790365_DEL [dm3] 2L_2790365_DEL [dm6]	TATCGTT	T	4.577e^-5	0.856	INTRON Syt1
X	15645604	X_15645604_SNP [dm3] X_15751571_SNP [dm6]	A	T	4.579e^-5	0.856	UTR_3_PRIME CG8239 DOWNSTREAM Graf & 1 other
2R	2606667	2R_2606667_SNP [dm3] 2R_6719162_SNP [dm6]	C	T	4.595e^-5	0.856	SYNONYMOUS_CODING Zip42C.2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	14380805	X_14380805_SNP [dm3] X_14486772_SNP [dm6]	A	G	4.602e^-5	0.856	INTERGENIC
2L	7887198	2L_7887198_SNP [dm3] 2L_7887198_SNP [dm6]	G	A	4.639e^-5	0.856	UTR_5_PRIME CG7102 DOWNSTREAM Spn28Da	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	7895339	2L_7895339_SNP [dm3] 2L_7895339_SNP [dm6]	A	G	4.776e^-5	0.856	SYNONYMOUS_CODING Snoo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2528059	3L_2528059_SNP [dm3] 3L_2528059_SNP [dm6]	A	G	4.836e^-5	0.856	INTRON Spn
2R	16610851	2R_16610851_SNP [dm3] 2R_20723346_SNP [dm6]	A	G	4.858e^-5	0.856	DOWNSTREAM CR44660 INTRON dpr
2R	10868635	2R_10868635_SNP [dm3] 2R_14981130_SNP [dm6]	T	C	4.924e^-5	0.856	UPSTREAM pcs DOWNSTREAM ckn INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Ubx
2L	9346905	2L_9346905_SNP [dm3] 2L_9346905_SNP [dm6]	T	C	4.976e^-5	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	3310804	3L_3310804_SNP [dm3] 3L_3310804_SNP [dm6]	T	C	4.982e^-5	0.856	SYNONYMOUS_CODING ZnT63C
2R	19973961	2R_19973961_SNP [dm3] 2R_24086438_SNP [dm6]	A	C	5.001e^-5	0.856	UPSTREAM snama DOWNSTREAM CG16786 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3R	8128600	3R_8128600_SNP [dm3] 3R_12302878_SNP [dm6]	A	T	5.026e^-5	0.856	DOWNSTREAM svp INTERGENIC	TF binding site mE1_TFBS_inv
2R	948371	2R_948371_SNP [dm3] 2R_5060866_SNP [dm6]	T	C	5.057e^-5	0.856	INTERGENIC	transposable element FlyBase
2L	8791320	2L_8791320_SNP [dm3] 2L_8791320_SNP [dm6]	T	C	5.129e^-5	0.856	INTERGENIC
X	8716329	X_8716329_SNP [dm3] X_8822296_SNP [dm6]	G	A	5.152e^-5	0.856	INTERGENIC
2R	19974009	2R_19974009_SNP [dm3] 2R_24086486_SNP [dm6]	T	A	5.175e^-5	0.856	UPSTREAM snama DOWNSTREAM CG16786 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3L	3102567	3L_3102567_SNP [dm3] 3L_3102567_SNP [dm6]	G	A	5.228e^-5	0.856	INTRON Cht7
3R	18823631	3R_18823631_SNP [dm3] 3R_22997909_SNP [dm6]	C	A	5.523e^-5	0.856	DOWNSTREAM CR43454 INTRON Nha2
2R	9225140	2R_9225140_DEL [dm3] 2R_13337635_DEL [dm6]	AA	G	5.589e^-5	0.856	INTRON CR44206	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	20356036	X_20356036_SNP [dm3] X_20485009_SNP [dm6]	A	C	5.809e^-5	0.856	INTRON RhoGAP19D
X	8631644	X_8631644_SNP [dm3] X_8737611_SNP [dm6]	G	C	5.862e^-5	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
2L	11446995	2L_11446995_SNP [dm3] 2L_11446995_SNP [dm6]	G	A	5.913e^-5	0.856	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	11953758	X_11953758_SNP [dm3] X_12059725_SNP [dm6]	T	C	5.915e^-5	0.856	UPSTREAM Muc11A INTRON CR43960 & 1 other
3L	8000899	3L_8000899_SNP [dm3] 3L_8007799_SNP [dm6]	A	C	5.982e^-5	0.856	INTRON nmo
2R	1007292	2R_1007292_SNP [dm3] 2R_5119787_SNP [dm6]	C	T	5.983e^-5	0.856	INTRON gus
2R	17357265	2R_17357265_SNP [dm3] 2R_21469760_SNP [dm6]	A	T	6.004e^-5	0.856	INTRON Sdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2180902	3L_2180902_SNP [dm3] 3L_2180902_SNP [dm6]	A	G	6.097e^-5	0.856	INTERGENIC
2L	9971425	2L_9971425_SNP [dm3] 2L_9971425_SNP [dm6]	A	G	6.117e^-5	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2697354	X_2697354_SNP [dm3] X_2803321_SNP [dm6]	C	A	6.130e^-5	0.856	INTRON kirre
3R	14707432	3R_14707432_SNP [dm3] 3R_18881710_SNP [dm6]	A	C	6.142e^-5	0.856	INTERGENIC
3L	21782916	3L_21782916_SNP [dm3] 3L_21789816_SNP [dm6]	G	A	6.172e^-5	0.856	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4191571	2L_4191571_SNP [dm3] 2L_4191571_SNP [dm6]	A	G	6.194e^-5	0.856	INTRON CG3714
3L	7987893	3L_7987893_SNP [dm3] 3L_7994793_SNP [dm6]	T	A	6.296e^-5	0.856	INTRON nmo
2L	14249711	2L_14249711_SNP [dm3] 2L_14249711_SNP [dm6]	C	T	6.299e^-5	0.856	INTERGENIC
2L	19361146	2L_19361146_INS [dm3] 2L_19361146_INS [dm6]	C	CT	6.308e^-5	0.856	INTRON dnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_disco
2L	14930097	2L_14930097_SNP [dm3] 2L_14930097_SNP [dm6]	C	T	6.347e^-5	0.856	SYNONYMOUS_CODING CG3491 INTRON CG42313
3R	14909472	3R_14909472_SNP [dm3] 3R_19083750_SNP [dm6]	G	A	6.526e^-5	0.856	INTRON cdi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3763150	2R_3763150_SNP [dm3] 2R_7875645_SNP [dm6]	T	C	6.561e^-5	0.856	INTRON Dgk
2L	4191570	2L_4191570_SNP [dm3] 2L_4191570_SNP [dm6]	C	T	6.568e^-5	0.856	INTRON CG3714
2R	2634681	2R_2634681_SNP [dm3] 2R_6747176_SNP [dm6]	G	A	6.605e^-5	0.856	INTRON CG3267
3L	9049515	3L_9049515_SNP [dm3] 3L_9056415_SNP [dm6]	G	A	6.622e^-5	0.856	INTRON Argk	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	12372813	X_12372813_SNP [dm3] X_12478780_SNP [dm6]	A	T	6.695e^-5	0.856	DOWNSTREAM CG42258 INTERGENIC
3R	16302386	3R_16302386_SNP [dm3] 3R_20476664_SNP [dm6]	C	G	6.733e^-5	0.856	INTRON Gfrl
2R	11299467	2R_11299467_SNP [dm3] 2R_15411962_SNP [dm6]	T	C	6.742e^-5	0.856	INTRON CG43729
2R	14085614	2R_14085614_SNP [dm3] 2R_18198109_SNP [dm6]	A	T	6.879e^-5	0.856	INTERGENIC
2L	14249656	2L_14249656_SNP [dm3] 2L_14249656_SNP [dm6]	A	T	6.895e^-5	0.856	INTERGENIC
3R	11906553	3R_11906553_SNP [dm3] 3R_16080831_SNP [dm6]	A	G	6.944e^-5	0.856	UTR_5_PRIME CG32855 INTRON Mhcl	TF binding site mE1_TFBS_chinmo
3L	899943	3L_899943_SNP [dm3] 3L_899943_SNP [dm6]	T	G	7.021e^-5	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	21070253	X_21070253_SNP [dm3] X_21199226_SNP [dm6]	C	G	7.151e^-5	0.856	INTERGENIC
X	20232034	X_20232034_SNP [dm3] X_20361007_SNP [dm6]	A	T	7.170e^-5	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
3L	1578636	3L_1578636_SNP [dm3] 3L_1578636_SNP [dm6]	T	A	7.171e^-5	0.856	INTRON CG13917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_jumu
2L	19224983	2L_19224983_SNP [dm3] 2L_19224983_SNP [dm6]	A	T	7.228e^-5	0.856	INTERGENIC
3L	2525213	3L_2525213_SNP [dm3] 3L_2525213_SNP [dm6]	A	T	7.257e^-5	0.856	SYNONYMOUS_CODING Spn DOWNSTREAM CG32295	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv
3R	14051713	3R_14051713_SNP [dm3] 3R_18225991_SNP [dm6]	T	C	7.381e^-5	0.856	START_GAINED CG7168 UTR_5_PRIME CG7168 UPSTREAM Mdh2	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	16308179	3L_16308179_SNP [dm3] 3L_16315079_SNP [dm6]	A	G	7.400e^-5	0.856	UTR_3_PRIME CG13062	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14469993	2R_14469993_SNP [dm3] 2R_18582488_SNP [dm6]	G	C	7.429e^-5	0.856	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3L	2525441	3L_2525441_SNP [dm3] 3L_2525441_SNP [dm6]	C	G	7.461e^-5	0.856	SYNONYMOUS_CODING Spn DOWNSTREAM CG32295	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	11065758	3L_11065758_SNP [dm3] 3L_11072658_SNP [dm6]	A	G	7.477e^-5	0.856	NON_SYNONYMOUS_CODING Mocs1 UTR_3_PRIME Mocs1 DOWNSTREAM l_3_01239	TF binding site mE1_TFBS_sens
2L	2045969	2L_2045969_SNP [dm3] 2L_2045969_SNP [dm6]	A	G	7.487e^-5	0.856	NON_SYNONYMOUS_CODING Kebab UPSTREAM CR45298	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3341891	2L_3341891_SNP [dm3] 2L_3341891_SNP [dm6]	T	C	7.518e^-5	0.856	INTRON E23
3L	13761327	3L_13761327_DEL [dm3] 3L_13768227_DEL [dm6]	GGGACAGGACACTGTGCTCT...	G	7.523e^-5	0.856	INTRON bru-3
2L	19364748	2L_19364748_SNP [dm3] 2L_19364748_SNP [dm6]	C	G	7.533e^-5	0.856	INTRON CG13086
2L	9300926	2L_9300926_SNP [dm3] 2L_9300926_SNP [dm6]	C	G	7.537e^-5	0.856	UTR_3_PRIME Ggamma30A
2L	7894708	2L_7894708_SNP [dm3] 2L_7894708_SNP [dm6]	T	C	7.559e^-5	0.856	NON_SYNONYMOUS_CODING Snoo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6933240	3L_6933240_SNP [dm3] 3L_6940140_SNP [dm6]	T	C	7.563e^-5	0.856	UPSTREAM CR45412 INTERGENIC
3R	2167567	3R_2167567_SNP [dm3] 3R_6341845_SNP [dm6]	T	C	7.579e^-5	0.856	UPSTREAM CG17917 DOWNSTREAM Osi20 INTERGENIC
X	21901986	X_21901986_INS [dm3] X_22500150_INS [dm6]	C	CTTCC	7.639e^-5	0.856	INTRON l_1_G0196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7523973	2L_7523973_SNP [dm3] 2L_7523973_SNP [dm6]	G	A	7.752e^-5	0.856	INTRON RapGAP1
2L	2689901	2L_2689901_SNP [dm3] 2L_2689901_SNP [dm6]	G	A	7.765e^-5	0.856	INTRON CG31690
3L	18812954	3L_18812954_SNP [dm3] 3L_18819854_SNP [dm6]	C	A	7.782e^-5	0.856	UTR_5_PRIME CG14073	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	11446822	2L_11446822_SNP [dm3] 2L_11446822_SNP [dm6]	C	G	7.784e^-5	0.856	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	11462476	3R_11462476_SNP [dm3] 3R_15636754_SNP [dm6]	T	A	7.802e^-5	0.856	UPSTREAM CG43336 DOWNSTREAM CG43335 INTERGENIC
3R	25907513	3R_25907513_SNP [dm3] 3R_30081791_SNP [dm6]	A	G	7.889e^-5	0.856	INTRON sima
2R	16410933	2R_16410933_SNP [dm3] 2R_20523428_SNP [dm6]	C	A	8.014e^-5	0.856	INTERGENIC
2R	11298386	2R_11298386_SNP [dm3] 2R_15410881_SNP [dm6]	A	T	8.052e^-5	0.856	INTRON CG43729
3L	834070	3L_834070_SNP [dm3] 3L_834070_SNP [dm6]	T	C	8.069e^-5	0.856	UPSTREAM CG42553 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9014905	2L_9014905_SNP [dm3] 2L_9014905_SNP [dm6]	G	A	8.086e^-5	0.856	UPSTREAM Rcd-1r DOWNSTREAM CG13102 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9090899	2L_9090899_SNP [dm3] 2L_9090899_SNP [dm6]	A	G	8.197e^-5	0.856	INTERGENIC
3R	10124319	3R_10124319_SNP [dm3] 3R_14298597_SNP [dm6]	A	T	8.210e^-5	0.856	UTR_5_PRIME CG12207 UPSTREAM CG12207 INTRON CG12207	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	4636283	3L_4636283_SNP [dm3] 3L_4636283_SNP [dm6]	T	A	8.268e^-5	0.856	DOWNSTREAM axo INTRON axo
3L	2858642	3L_2858642_SNP [dm3] 3L_2858642_SNP [dm6]	A	G	8.315e^-5	0.856	INTRON CG43444
3L	2698458	3L_2698458_SNP [dm3] 3L_2698458_SNP [dm6]	G	A	8.392e^-5	0.856	INTRON Fife
2L	10033565	2L_10033565_SNP [dm3] 2L_10033565_SNP [dm6]	G	A	8.514e^-5	0.856	INTRON obst-B
2R	19974286	2R_19974286_SNP [dm3] 2R_24086763_SNP [dm6]	T	C	8.642e^-5	0.856	UTR_5_PRIME snama DOWNSTREAM CG16786 INTRON snama	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
X	15791028	X_15791028_SNP [dm3] X_15896995_SNP [dm6]	G	A	8.751e^-5	0.856	INTRON shi
2L	14249689	2L_14249689_SNP [dm3] 2L_14249689_SNP [dm6]	G	T	8.785e^-5	0.856	INTERGENIC
2L	9871921	2L_9871921_SNP [dm3] 2L_9871921_SNP [dm6]	C	A	8.789e^-5	0.856	INTRON nAChRalpha6
2L	17430527	2L_17430527_SNP [dm3] 2L_17430527_SNP [dm6]	C	A	8.843e^-5	0.856	DOWNSTREAM CR44409 INTRON Dif
2L	9018344	2L_9018344_SNP [dm3] 2L_9018344_SNP [dm6]	C	T	8.846e^-5	0.856	INTERGENIC
2R	17467641	2R_17467641_SNP [dm3] 2R_21580136_SNP [dm6]	G	T	8.896e^-5	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25095102	3R_25095102_SNP [dm3] 3R_29269380_SNP [dm6]	C	A	8.916e^-5	0.856	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	2180717	3L_2180717_SNP [dm3] 3L_2180717_SNP [dm6]	G	A	8.985e^-5	0.856	INTERGENIC
3R	11462455	3R_11462455_INS [dm3] 3R_15636733_INS [dm6]	G	GG	8.997e^-5	0.856	UPSTREAM CG43336 DOWNSTREAM CG43335 INTERGENIC
3L	21783222	3L_21783222_SNP [dm3] 3L_21790122_SNP [dm6]	C	T	9.024e^-5	0.856	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
2L	19098790	2L_19098790_SNP [dm3] 2L_19098790_SNP [dm6]	C	T	9.026e^-5	0.856	INTRON Lim3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13056878	2R_13056878_SNP [dm3] 2R_17169373_SNP [dm6]	G	A	9.029e^-5	0.856	INTERGENIC
X	15011269	X_15011269_SNP [dm3] X_15117236_SNP [dm6]	C	T	9.030e^-5	0.856	UPSTREAM Cyp4s3 INTERGENIC
2L	7886298	2L_7886298_SNP [dm3] 2L_7886298_SNP [dm6]	T	G	9.034e^-5	0.856	UPSTREAM SmE DOWNSTREAM CG34132 INTRON CG7102	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	19190980	3L_19190980_SNP [dm3] 3L_19197880_SNP [dm6]	C	T	9.041e^-5	0.856	INTRON fz2
X	3659036	X_3659036_INS [dm3] X_3765003_INS [dm6]	A	AATTCATTGCTAA...	9.256e^-5	0.856	INTRON tlk
2L	14229524	2L_14229524_SNP [dm3] 2L_14229524_SNP [dm6]	G	C	9.276e^-5	0.856	SPLICE_SITE_REGION Dyrk2 UTR_5_PRIME Dyrk2 INTRON Dyrk2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8000897	3L_8000897_SNP [dm3] 3L_8007797_SNP [dm6]	G	A	9.352e^-5	0.856	INTRON nmo
X	4480129	X_4480129_SNP [dm3] X_4586096_SNP [dm6]	G	T	9.431e^-5	0.856	INTRON CR32773
3L	2528374	3L_2528374_SNP [dm3] 3L_2528374_SNP [dm6]	T	C	9.516e^-5	0.856	INTRON Spn
2R	14085604	2R_14085604_SNP [dm3] 2R_18198099_SNP [dm6]	A	T	9.517e^-5	0.856	INTERGENIC
2R	14085607	2R_14085607_SNP [dm3] 2R_18198102_SNP [dm6]	A	G	9.517e^-5	0.856	INTERGENIC
2L	7886502	2L_7886502_SNP [dm3] 2L_7886502_SNP [dm6]	A	G	9.671e^-5	0.856	DOWNSTREAM CG34132 INTRON CG7102	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	5416671	2L_5416671_SNP [dm3] 2L_5416671_SNP [dm6]	G	A	9.735e^-5	0.856	DOWNSTREAM H15 INTERGENIC	TF binding site mE1_TFBS_Kr
2L	14249515	2L_14249515_SNP [dm3] 2L_14249515_SNP [dm6]	C	G	9.754e^-5	0.856	INTERGENIC
2R	10891768	2R_10891768_SNP [dm3] 2R_15004263_SNP [dm6]	C	A	9.930e^-5	0.856	INTERGENIC
3R	10335351	3R_10335351_SNP [dm3] 3R_14509629_SNP [dm6]	A	G	1.000e^-4	0.856	UTR_3_PRIME HtrA2 DOWNSTREAM HtrA2 & 1 other	TF binding site mE1_TFBS_inv
X	18373999	X_18373999_DEL [dm3] X_18479966_DEL [dm6]	ATCGATTCT	A	1.009e^-4	0.856	UPSTREAM CR45714 & 1 other DOWNSTREAM Hayan INTERGENIC	TF binding site mE1_TFBS_HSA
2L	19912411	2L_19912411_SNP [dm3] 2L_19912411_SNP [dm6]	C	A	1.017e^-4	0.856	UPSTREAM CR43097 & 1 other DOWNSTREAM Victoria INTRON sick
2R	989613	2R_989613_SNP [dm3] 2R_5102108_SNP [dm6]	A	C	1.017e^-4	0.856	INTERGENIC	transposable element FlyBase
2L	14340936	2L_14340936_SNP [dm3] 2L_14340936_SNP [dm6]	A	C	1.026e^-4	0.856	DOWNSTREAM CG15286 INTRON CG33090
X	21903057	X_21903057_SNP [dm3] X_22501221_SNP [dm6]	G	A	1.029e^-4	0.856	SYNONYMOUS_CODING l_1_G0196 INTRON l_1_G0196	TF binding site mE1_TFBS_sens
X	6593870	X_6593870_INS [dm3] X_6699837_INS [dm6]	C	CC	1.049e^-4	0.856	UTR_5_PRIME CG14441 INTRON CG14441	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	2844571	2L_2844571_DEL [dm3] 2L_2844571_DEL [dm6]	AGTACGATTAAAATCCAA...	A	1.051e^-4	0.856	UPSTREAM CG18558 DOWNSTREAM CG18557 INTERGENIC	TF binding site mE1_TFBS_cad
2L	2045950	2L_2045950_SNP [dm3] 2L_2045950_SNP [dm6]	T	G	1.054e^-4	0.856	NON_SYNONYMOUS_CODING Kebab UPSTREAM CR45298	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	11934822	3L_11934822_SNP [dm3] 3L_11941722_SNP [dm6]	C	A	1.059e^-4	0.856	UPSTREAM Rpt4R INTERGENIC
3L	21783292	3L_21783292_SNP [dm3] 3L_21790192_SNP [dm6]	T	C	1.060e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
2L	6844325	2L_6844325_SNP [dm3] 2L_6844325_SNP [dm6]	A	G	1.067e^-4	0.856	INTERGENIC
2R	16410596	2R_16410596_DEL [dm3] 2R_20523091_DEL [dm6]	ATGGAGTGATGTCTGAGCCA...	A	1.071e^-4	0.856	INTERGENIC
2L	9035291	2L_9035291_DEL [dm3] 2L_9035291_DEL [dm6]	AGTAA	A	1.081e^-4	0.856	INTERGENIC
X	18890912	X_18890912_SNP [dm3] X_18996879_SNP [dm6]	C	G	1.083e^-4	0.856	INTRON CG43759	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3311014	3L_3311014_SNP [dm3] 3L_3311014_SNP [dm6]	A	T	1.087e^-4	0.856	INTRON ZnT63C
3L	4012139	3L_4012139_SNP [dm3] 3L_4012139_SNP [dm6]	A	T	1.103e^-4	0.856	INTERGENIC
2R	17140024	2R_17140024_SNP [dm3] 2R_21252519_SNP [dm6]	G	T	1.114e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	11308218	3R_11308218_SNP [dm3] 3R_15482496_SNP [dm6]	A	C	1.116e^-4	0.856	UPSTREAM Rh6 INTRON CG14870	TF binding site mE1_TFBS_chinmo
3R	8128513	3R_8128513_SNP [dm3] 3R_12302791_SNP [dm6]	T	C	1.119e^-4	0.856	DOWNSTREAM svp INTERGENIC	TF binding site mE1_TFBS_inv
2L	7887356	2L_7887356_SNP [dm3] 2L_7887356_SNP [dm6]	T	C	1.130e^-4	0.856	UTR_5_PRIME CG7102 DOWNSTREAM Spn28Da	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	9473028	2L_9473028_SNP [dm3] 2L_9473028_SNP [dm6]	C	A	1.131e^-4	0.856	INTERGENIC
2R	1006797	2R_1006797_SNP [dm3] 2R_5119292_SNP [dm6]	T	A	1.138e^-4	0.856	INTRON gus
3R	18226697	3R_18226697_SNP [dm3] 3R_22400975_SNP [dm6]	T	G	1.145e^-4	0.856	INTERGENIC
2R	19218745	2R_19218745_SNP [dm3] 2R_23331222_SNP [dm6]	G	A	1.145e^-4	0.856	INTERGENIC
2L	796722	2L_796722_SNP [dm3] 2L_796722_SNP [dm6]	A	G	1.148e^-4	0.856	INTERGENIC
3L	8775360	3L_8775360_SNP [dm3] 3L_8782260_SNP [dm6]	T	C	1.154e^-4	0.856	INTRON Fhos
3L	2287709	3L_2287709_SNP [dm3] 3L_2287709_SNP [dm6]	C	T	1.169e^-4	0.856	INTRON MsR2
2L	10502556	2L_10502556_SNP [dm3] 2L_10502556_SNP [dm6]	A	G	1.176e^-4	0.856	INTRON Myo31DF
2L	17428429	2L_17428429_SNP [dm3] 2L_17428429_SNP [dm6]	C	T	1.189e^-4	0.856	UPSTREAM Dif INTRON Dif
3L	1457179	3L_1457179_SNP [dm3] 3L_1457179_SNP [dm6]	G	T	1.190e^-4	0.856	INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	10638711	3L_10638711_SNP [dm3] 3L_10645611_SNP [dm6]	G	A	1.205e^-4	0.856	DOWNSTREAM CG14153 INTRON CG32066
3L	510353	3L_510353_SNP [dm3] 3L_510353_SNP [dm6]	G	A	1.206e^-4	0.856	INTRON klar
3L	15504449	3L_15504449_SNP [dm3] 3L_15511349_SNP [dm6]	A	C	1.223e^-4	0.856	UPSTREAM Eip71CD DOWNSTREAM gdl-ORF39 & 1 other INTRON Eip71CD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	9440861	2L_9440861_SNP [dm3] 2L_9440861_SNP [dm6]	A	C	1.227e^-4	0.856	UPSTREAM CG33723 INTRON numb
3R	14009997	3R_14009997_SNP [dm3] 3R_18184275_SNP [dm6]	A	G	1.230e^-4	0.856	SYNONYMOUS_CODING CG7208 UPSTREAM cdm	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14568998	2L_14568998_SNP [dm3] 2L_14568998_SNP [dm6]	G	A	1.231e^-4	0.856	INTERGENIC
3R	18823601	3R_18823601_SNP [dm3] 3R_22997879_SNP [dm6]	A	C	1.241e^-4	0.856	DOWNSTREAM CR43454 INTRON Nha2
2R	17016515	2R_17016515_SNP [dm3] 2R_21129010_SNP [dm6]	C	T	1.243e^-4	0.856	UPSTREAM CG4050 DOWNSTREAM Magi INTRON mago	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	6933271	3L_6933271_SNP [dm3] 3L_6940171_SNP [dm6]	A	C	1.243e^-4	0.856	UPSTREAM CR45412 INTERGENIC
3R	23464504	3R_23464504_SNP [dm3] 3R_27638782_SNP [dm6]	A	C	1.249e^-4	0.856	UTR_3_PRIME Mtl	TF binding site mE1_TFBS_cad
3L	15019598	3L_15019598_SNP [dm3] 3L_15026498_SNP [dm6]	G	C	1.251e^-4	0.856	INTRON Sytbeta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	19301889	2R_19301889_SNP [dm3] 2R_23414366_SNP [dm6]	C	T	1.258e^-4	0.856	INTRON CG9812
2L	9509979	2L_9509979_SNP [dm3] 2L_9509979_SNP [dm6]	G	T	1.262e^-4	0.856	INTRON CG33298
3L	12556687	3L_12556687_SNP [dm3] 3L_12563587_SNP [dm6]	T	C	1.265e^-4	0.856	INTRON sowah
X	2267760	X_2267760_SNP [dm3] X_2373727_SNP [dm6]	A	G	1.268e^-4	0.856	SYNONYMOUS_CODING PsGEF UTR_3_PRIME PsGEF	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	20240447	X_20240447_SNP [dm3] X_20369420_SNP [dm6]	T	G	1.275e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	24118529	3R_24118529_SNP [dm3] 3R_28292807_SNP [dm6]	C	T	1.281e^-4	0.856	UTR_5_PRIME Mst98Cb DOWNSTREAM Mst98Ca	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	983332	2R_983332_SNP [dm3] 2R_5095827_SNP [dm6]	T	C	1.284e^-4	0.856	DOWNSTREAM CG3107 INTERGENIC	TF binding site mE1_TFBS_cad transposable element FlyBase
X	5819165	X_5819165_SNP [dm3] X_5925132_SNP [dm6]	T	C	1.284e^-4	0.856	INTRON CG3726
2L	3791514	2L_3791514_SNP [dm3] 2L_3791514_SNP [dm6]	A	T	1.286e^-4	0.856	INTRON CG3921
3L	2868508	3L_2868508_SNP [dm3] 3L_2868508_SNP [dm6]	C	T	1.287e^-4	0.856	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26079189	3R_26079189_SNP [dm3] 3R_30253467_SNP [dm6]	T	C	1.287e^-4	0.856	DOWNSTREAM CG9682 INTRON CG18404
2R	991217	2R_991217_SNP [dm3] 2R_5103712_SNP [dm6]	C	A	1.290e^-4	0.856	INTERGENIC	transposable element FlyBase
2R	2634555	2R_2634555_SNP [dm3] 2R_6747050_SNP [dm6]	A	G	1.294e^-4	0.856	DOWNSTREAM phtf INTRON CG3267
3L	2529006	3L_2529006_INS [dm3] 3L_2529006_INS [dm6]	A	TG	1.295e^-4	0.856	INTRON Spn
2R	12474766	2R_12474766_SNP [dm3] 2R_16587261_SNP [dm6]	A	G	1.298e^-4	0.856	UTR_3_PRIME CG8311 DOWNSTREAM RpLP2	TF binding site mE1_TFBS_cad
2R	11299449	2R_11299449_SNP [dm3] 2R_15411944_SNP [dm6]	T	A	1.302e^-4	0.856	INTRON CG43729
3L	21791412	3L_21791412_SNP [dm3] 3L_21798312_SNP [dm6]	G	T	1.302e^-4	0.856	INTERGENIC
3L	9357338	3L_9357338_SNP [dm3] 3L_9364238_SNP [dm6]	T	C	1.305e^-4	0.856	UPSTREAM CG4447 INTRON Klp67A	TF binding site mE1_TFBS_HSA
3L	2858594	3L_2858594_DEL [dm3] 3L_2858594_DEL [dm6]	ATA	A	1.306e^-4	0.856	INTRON CG43444	insulator Insulator_Class_II.mE01
3R	11327661	3R_11327661_SNP [dm3] 3R_15501939_SNP [dm6]	C	T	1.324e^-4	0.856	INTERGENIC
X	7698883	X_7698883_SNP [dm3] X_7804850_SNP [dm6]	T	C	1.328e^-4	0.856	INTERGENIC
3L	1330665	3L_1330665_SNP [dm3] 3L_1330665_SNP [dm6]	A	G	1.332e^-4	0.856	INTRON mtacp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	2835555	2L_2835555_SNP [dm3] 2L_2835555_SNP [dm6]	G	C	1.333e^-4	0.856	SPLICE_SITE_REGION CG3119 DOWNSTREAM CG3119 INTRON CG3119
2R	1627772	2R_1627772_DEL [dm3] 2R_5740267_DEL [dm6]	AA	T	1.335e^-4	0.856	INTERGENIC	regulatory region REDfly_CRMs transposable element FlyBase
3L	18002492	3L_18002492_SNP [dm3] 3L_18009392_SNP [dm6]	G	A	1.336e^-4	0.856	INTRON Eip75B
2L	20109911	2L_20109911_SNP [dm3] 2L_20109911_SNP [dm6]	G	T	1.339e^-4	0.856	INTERGENIC
2L	5461968	2L_5461968_SNP [dm3] 2L_5461968_SNP [dm6]	T	A	1.339e^-4	0.856	SYNONYMOUS_CODING mid	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	11693161	2R_11693161_SNP [dm3] 2R_15805656_SNP [dm6]	C	T	1.340e^-4	0.856	INTRON tun & 1 other
3L	12474157	3L_12474157_SNP [dm3] 3L_12481057_SNP [dm6]	G	A	1.356e^-4	0.856	INTRON CG10663
2R	990180	2R_990180_SNP [dm3] 2R_5102675_SNP [dm6]	A	G	1.360e^-4	0.856	INTERGENIC	transposable element FlyBase
3R	18151295	3R_18151295_SNP [dm3] 3R_22325573_SNP [dm6]	G	C	1.364e^-4	0.856	INTERGENIC
2L	8810869	2L_8810869_SNP [dm3] 2L_8810869_SNP [dm6]	C	T	1.365e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4365702	2L_4365702_SNP [dm3] 2L_4365702_SNP [dm6]	A	G	1.366e^-4	0.856	INTRON Traf4	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3L	13924582	3L_13924582_SNP [dm3] 3L_13931482_SNP [dm6]	T	G	1.368e^-4	0.856	INTRON Gl
X	15645582	X_15645582_SNP [dm3] X_15751549_SNP [dm6]	G	T	1.374e^-4	0.856	UTR_3_PRIME CG8239 DOWNSTREAM Graf & 1 other
2R	9225127	2R_9225127_SNP [dm3] 2R_13337622_SNP [dm6]	C	A	1.379e^-4	0.856	INTRON CR44206	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7074636	2R_7074636_SNP [dm3] 2R_11187131_SNP [dm6]	C	G	1.386e^-4	0.856	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	4459622	3R_4459622_SNP [dm3] 3R_8633900_SNP [dm6]	G	A	1.389e^-4	0.856	DOWNSTREAM Or85e INTERGENIC
X	2831529	X_2831529_SNP [dm3] X_2937496_SNP [dm6]	C	G	1.391e^-4	0.856	NON_SYNONYMOUS_CODING CG3598 INTRON kirre	TF binding site mE1_TFBS_chinmo
2L	8289770	2L_8289770_SNP [dm3] 2L_8289770_SNP [dm6]	A	G	1.398e^-4	0.856	UPSTREAM tRNA:K5:29A INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	20232064	X_20232064_SNP [dm3] X_20361037_SNP [dm6]	A	C	1.399e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
2L	14906597	2L_14906597_SNP [dm3] 2L_14906597_SNP [dm6]	C	T	1.401e^-4	0.856	DOWNSTREAM CG42313 INTERGENIC
2R	980539	2R_980539_SNP [dm3] 2R_5093034_SNP [dm6]	A	G	1.407e^-4	0.856	SYNONYMOUS_CODING CG3107	TF binding site BDTNP1_TFBS_twi
2R	12535360	2R_12535360_SNP [dm3] 2R_16647855_SNP [dm6]	C	T	1.408e^-4	0.856	SYNONYMOUS_CODING gprs UTR_3_PRIME gprs INTRON gprs	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14249583	2L_14249583_SNP [dm3] 2L_14249583_SNP [dm6]	G	C	1.412e^-4	0.856	INTERGENIC
3L	5717539	3L_5717539_SNP [dm3] 3L_5724439_SNP [dm6]	G	T	1.415e^-4	0.856	INTRON sif
2R	12541811	2R_12541811_SNP [dm3] 2R_16654306_SNP [dm6]	C	T	1.416e^-4	0.856	NON_SYNONYMOUS_CODING Nach INTRON Nach
2L	18511404	2L_18511404_SNP [dm3] 2L_18511404_SNP [dm6]	C	T	1.416e^-4	0.856	INTRON CG10178
2L	9286266	2L_9286266_SNP [dm3] 2L_9286266_SNP [dm6]	A	G	1.423e^-4	0.856	INTRON Ggamma30A
3R	11462542	3R_11462542_SNP [dm3] 3R_15636820_SNP [dm6]	T	A	1.432e^-4	0.856	UPSTREAM CG43336 DOWNSTREAM CG43335 INTERGENIC
3L	10913062	3L_10913062_SNP [dm3] 3L_10919962_SNP [dm6]	A	G	1.440e^-4	0.856	INTERGENIC
2L	7886372	2L_7886372_SNP [dm3] 2L_7886372_SNP [dm6]	C	T	1.444e^-4	0.856	SYNONYMOUS_CODING CG7102 UPSTREAM SmE DOWNSTREAM CG34132	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	13059207	2R_13059207_SNP [dm3] 2R_17171702_SNP [dm6]	G	T	1.465e^-4	0.856	INTERGENIC
3R	14707357	3R_14707357_SNP [dm3] 3R_18881635_SNP [dm6]	T	G	1.466e^-4	0.856	INTERGENIC
2R	2713544	2R_2713544_SNP [dm3] 2R_6826039_SNP [dm6]	C	A	1.468e^-4	0.856	INTERGENIC
2R	992073	2R_992073_SNP [dm3] 2R_5104568_SNP [dm6]	A	T	1.473e^-4	0.856	INTERGENIC	transposable element FlyBase
X	18374009	X_18374009_INS [dm3] X_18479976_INS [dm6]	A	AAATTTCCCA	1.474e^-4	0.856	UPSTREAM CR45714 & 1 other DOWNSTREAM Hayan INTERGENIC	TF binding site mE1_TFBS_HSA
2R	11450156	2R_11450156_SNP [dm3] 2R_15562651_SNP [dm6]	A	C	1.477e^-4	0.856	DOWNSTREAM CG8195 & 1 other INTERGENIC
3L	2529709	3L_2529709_SNP [dm3] 3L_2529709_SNP [dm6]	C	T	1.479e^-4	0.856	INTRON Spn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	9033489	2L_9033489_DEL [dm3] 2L_9033489_DEL [dm6]	AC	A	1.486e^-4	0.856	INTERGENIC
3L	12083690	3L_12083690_SNP [dm3] 3L_12090590_SNP [dm6]	C	T	1.489e^-4	0.856	INTERGENIC
X	21272992	X_21272992_SNP [dm3] X_21401965_SNP [dm6]	G	A	1.492e^-4	0.856	DOWNSTREAM CG1678 INTERGENIC
X	15160709	X_15160709_SNP [dm3] X_15266676_SNP [dm6]	T	C	1.502e^-4	0.856	INTERGENIC
3R	24724210	3R_24724210_SNP [dm3] 3R_28898488_SNP [dm6]	G	T	1.504e^-4	0.856	INTRON Doa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19447188	2R_19447188_SNP [dm3] 2R_23559665_SNP [dm6]	G	C	1.504e^-4	0.856	SYNONYMOUS_CODING ItgalphaPS5 UPSTREAM Pi3K59F	TF binding site mE1_TFBS_sens
3R	24730098	3R_24730098_SNP [dm3] 3R_28904376_SNP [dm6]	T	A	1.515e^-4	0.856	INTRON Doa
3R	24807531	3R_24807531_SNP [dm3] 3R_28981809_SNP [dm6]	C	G	1.515e^-4	0.856	INTERGENIC
3L	2833704	3L_2833704_SNP [dm3] 3L_2833704_SNP [dm6]	T	A	1.516e^-4	0.856	INTRON CG43444
3R	14707388	3R_14707388_SNP [dm3] 3R_18881666_SNP [dm6]	T	A	1.517e^-4	0.856	INTERGENIC
2L	2936802	2L_2936802_SNP [dm3] 2L_2936802_SNP [dm6]	A	C	1.519e^-4	0.856	INTRON lilli	TF binding site BDTNP1_TFBS_dl
2L	796723	2L_796723_SNP [dm3] 2L_796723_SNP [dm6]	A	C	1.520e^-4	0.856	INTERGENIC
3L	16042014	3L_16042014_SNP [dm3] 3L_16048914_SNP [dm6]	A	G	1.521e^-4	0.856	UPSTREAM CR43951 INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6639549	3L_6639549_SNP [dm3] 3L_6646449_SNP [dm6]	G	A	1.522e^-4	0.856	INTERGENIC
2L	20429483	2L_20429483_SNP [dm3] 2L_20429483_SNP [dm6]	C	T	1.523e^-4	0.856	INTRON CG31688	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	3098687	3L_3098687_SNP [dm3] 3L_3098687_SNP [dm6]	G	A	1.523e^-4	0.856	INTRON Cht7
2L	19224962	2L_19224962_SNP [dm3] 2L_19224962_SNP [dm6]	C	A	1.525e^-4	0.856	INTERGENIC
2R	14470260	2R_14470260_SNP [dm3] 2R_18582755_SNP [dm6]	T	C	1.537e^-4	0.856	UTR_5_PRIME GEFmeso INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	19974064	2R_19974064_SNP [dm3] 2R_24086541_SNP [dm6]	A	T	1.543e^-4	0.856	UPSTREAM snama DOWNSTREAM CG16786 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	2581842	2R_2581842_SNP [dm3] 2R_6694337_SNP [dm6]	G	A	1.551e^-4	0.856	NON_SYNONYMOUS_CODING CG3270 DOWNSTREAM Mob4	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	995100	2R_995100_SNP [dm3] 2R_5107595_SNP [dm6]	C	T	1.553e^-4	0.856	INTERGENIC	transposable element FlyBase
2R	17489501	2R_17489501_SNP [dm3] 2R_21601996_SNP [dm6]	T	C	1.556e^-4	0.856	INTERGENIC
3R	18823747	3R_18823747_SNP [dm3] 3R_22998025_SNP [dm6]	A	T	1.558e^-4	0.856	DOWNSTREAM CR43454 INTRON Nha2
3R	11926882	3R_11926882_SNP [dm3] 3R_16101160_SNP [dm6]	G	A	1.562e^-4	0.856	NON_SYNONYMOUS_CODING Akt1 UTR_5_PRIME Akt1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_sens
2L	17434753	2L_17434753_SNP [dm3] 2L_17434753_SNP [dm6]	C	A	1.564e^-4	0.856	INTRON CG5043
3R	10982135	3R_10982135_SNP [dm3] 3R_15156413_SNP [dm6]	G	A	1.569e^-4	0.856	INTRON Gyc88E
2L	7884832	2L_7884832_SNP [dm3] 2L_7884832_SNP [dm6]	A	G	1.575e^-4	0.856	UPSTREAM CG34132 DOWNSTREAM SmE INTRON CG7102	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	11329627	3L_11329627_SNP [dm3] 3L_11336527_SNP [dm6]	T	C	1.576e^-4	0.856	INTERGENIC
3L	1122172	3L_1122172_SNP [dm3] 3L_1122172_SNP [dm6]	C	T	1.578e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3342442	2L_3342442_SNP [dm3] 2L_3342442_SNP [dm6]	G	A	1.586e^-4	0.856	INTRON E23
2L	11428394	2L_11428394_SNP [dm3] 2L_11428394_SNP [dm6]	T	C	1.591e^-4	0.856	INTERGENIC
2R	11341457	2R_11341457_SNP [dm3] 2R_15453952_SNP [dm6]	G	A	1.594e^-4	0.856	INTRON CG43729
3L	5784658	3L_5784658_SNP [dm3] 3L_5791558_SNP [dm6]	A	G	1.595e^-4	0.856	SYNONYMOUS_CODING Bre1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19857212	2L_19857212_SNP [dm3] 2L_19857212_SNP [dm6]	C	G	1.596e^-4	0.856	INTRON sick
3L	11329859	3L_11329859_SNP [dm3] 3L_11336759_SNP [dm6]	G	T	1.597e^-4	0.856	INTERGENIC
2L	20084226	2L_20084226_SNP [dm3] 2L_20084226_SNP [dm6]	C	T	1.597e^-4	0.856	INTRON neb & 1 other	TF binding site BDTNP1_TFBS_dl
2L	10928278	2L_10928278_INS [dm3] 2L_10928278_INS [dm6]	A	ATTAATT	1.599e^-4	0.856	INTRON dpr2
2L	19857203	2L_19857203_SNP [dm3] 2L_19857203_SNP [dm6]	A	G	1.600e^-4	0.856	INTRON sick
X	3049592	X_3049592_SNP [dm3] X_3155559_SNP [dm6]	A	C	1.602e^-4	0.856	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna
2L	10128922	2L_10128922_SNP [dm3] 2L_10128922_SNP [dm6]	G	A	1.612e^-4	0.856	INTRON CG44153
2L	3605138	2L_3605138_SNP [dm3] 2L_3605138_SNP [dm6]	C	G	1.616e^-4	0.856	SYNONYMOUS_CODING odd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	13056923	2R_13056923_SNP [dm3] 2R_17169418_SNP [dm6]	T	C	1.628e^-4	0.856	INTERGENIC
3L	19109579	3L_19109579_SNP [dm3] 3L_19116479_SNP [dm6]	C	A	1.638e^-4	0.856	INTRON CG14082
2L	9531861	2L_9531861_SNP [dm3] 2L_9531861_SNP [dm6]	C	G	1.643e^-4	0.856	INTRON Oatp30B
2R	19826130	2R_19826130_SNP [dm3] 2R_23938607_SNP [dm6]	T	A	1.644e^-4	0.856	INTRON CG3735	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15760911	2L_15760911_SNP [dm3] 2L_15760911_SNP [dm6]	T	C	1.654e^-4	0.856	INTRON Gli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
2L	8289764	2L_8289764_SNP [dm3] 2L_8289764_SNP [dm6]	T	C	1.655e^-4	0.856	UPSTREAM tRNA:K5:29A INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	11597225	2L_11597225_SNP [dm3] 2L_11597225_SNP [dm6]	C	A	1.665e^-4	0.856	INTRON kek2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	12083703	3L_12083703_SNP [dm3] 3L_12090603_SNP [dm6]	C	T	1.666e^-4	0.856	INTERGENIC
2L	3244987	2L_3244987_SNP [dm3] 2L_3244987_SNP [dm6]	T	A	1.666e^-4	0.856	INTERGENIC
X	21272970	X_21272970_SNP [dm3] X_21401943_SNP [dm6]	C	A	1.668e^-4	0.856	DOWNSTREAM CG1678 INTERGENIC
X	5830143	X_5830143_SNP [dm3] X_5936110_SNP [dm6]	T	A	1.672e^-4	0.856	INTRON CG3726
2L	9261211	2L_9261211_SNP [dm3] 2L_9261211_SNP [dm6]	G	A	1.673e^-4	0.856	DOWNSTREAM CR45262 INTRON Ggamma30A
2L	9262563	2L_9262563_SNP [dm3] 2L_9262563_SNP [dm6]	A	G	1.674e^-4	0.856	INTRON Ggamma30A EXON CR45262
3R	20470666	3R_20470666_SNP [dm3] 3R_24644944_SNP [dm6]	A	C	1.679e^-4	0.856	SYNONYMOUS_CODING puf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8791341	2L_8791341_SNP [dm3] 2L_8791341_SNP [dm6]	T	C	1.680e^-4	0.856	INTERGENIC
2L	10913932	2L_10913932_SNP [dm3] 2L_10913932_SNP [dm6]	G	T	1.690e^-4	0.856	INTERGENIC
2R	8658551	2R_8658551_SNP [dm3] 2R_12771046_SNP [dm6]	T	G	1.691e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	19857187	2L_19857187_SNP [dm3] 2L_19857187_SNP [dm6]	A	G	1.691e^-4	0.856	INTRON sick
2R	1001515	2R_1001515_SNP [dm3] 2R_5114010_SNP [dm6]	A	C	1.692e^-4	0.856	INTERGENIC	transposable element FlyBase
3L	4984828	3L_4984828_SNP [dm3] 3L_4984828_SNP [dm6]	A	T	1.693e^-4	0.856	INTRON Con
3R	11462688	3R_11462688_SNP [dm3] 3R_15636966_SNP [dm6]	A	T	1.697e^-4	0.856	UPSTREAM CG43336 DOWNSTREAM CG43335 INTERGENIC
2R	19973971	2R_19973971_SNP [dm3] 2R_24086448_SNP [dm6]	G	A	1.698e^-4	0.856	UPSTREAM snama DOWNSTREAM CG16786 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3R	18823649	3R_18823649_SNP [dm3] 3R_22997927_SNP [dm6]	G	T	1.701e^-4	0.856	DOWNSTREAM CR43454 INTRON Nha2
2L	19867272	2L_19867272_SNP [dm3] 2L_19867272_SNP [dm6]	T	A	1.708e^-4	0.856	INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	19622448	2R_19622448_INS [dm3] 2R_23734925_INS [dm6]	T	TGTT	1.711e^-4	0.856	UTR_3_PRIME egl UPSTREAM mir-4979 DOWNSTREAM Sesn
2L	13048272	2L_13048272_SNP [dm3] 2L_13048272_SNP [dm6]	A	G	1.712e^-4	0.856	INTRON CG9932
2L	3819440	2L_3819440_SNP [dm3] 2L_3819440_SNP [dm6]	G	T	1.724e^-4	0.856	DOWNSTREAM CR44077 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12088471	2L_12088471_SNP [dm3] 2L_12088471_SNP [dm6]	C	T	1.728e^-4	0.856	DOWNSTREAM CR44593 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3L	16042018	3L_16042018_SNP [dm3] 3L_16048918_SNP [dm6]	C	T	1.736e^-4	0.856	UPSTREAM CR43951 INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19190975	3L_19190975_SNP [dm3] 3L_19197875_SNP [dm6]	A	C	1.743e^-4	0.856	INTRON fz2
2R	17611683	2R_17611683_SNP [dm3] 2R_21724178_SNP [dm6]	A	T	1.744e^-4	0.856	DOWNSTREAM LBR INTERGENIC
3R	10192223	3R_10192223_SNP [dm3] 3R_14366501_SNP [dm6]	G	T	1.751e^-4	0.856	INTRON NK7.1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc
3R	24495240	3R_24495240_SNP [dm3] 3R_28669518_SNP [dm6]	T	C	1.756e^-4	0.856	SYNONYMOUS_CODING CG33346
3L	833027	3L_833027_INS [dm3] 3L_833027_INS [dm6]	G	AA	1.763e^-4	0.856	UPSTREAM snoRNA:Psi28S-3308 DOWNSTREAM snoRNA:Psi18S-1086 INTRON CG13900	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	6758472	3L_6758472_SNP [dm3] 3L_6765372_SNP [dm6]	C	T	1.763e^-4	0.856	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12496556	X_12496556_DEL [dm3] X_12602523_DEL [dm6]	TGAAGAATGTGCTT...	T	1.764e^-4	0.856	INTRON Sec16	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	9035324	2L_9035324_SNP [dm3] 2L_9035324_SNP [dm6]	G	T	1.770e^-4	0.856	INTERGENIC
2R	13056937	2R_13056937_SNP [dm3] 2R_17169432_SNP [dm6]	C	T	1.771e^-4	0.856	INTERGENIC
2L	3346461	2L_3346461_SNP [dm3] 2L_3346461_SNP [dm6]	A	G	1.771e^-4	0.856	INTRON E23
2L	19817655	2L_19817655_SNP [dm3] 2L_19817655_SNP [dm6]	A	G	1.777e^-4	0.856	INTRON sick	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	11371575	X_11371575_INS [dm3] X_11477542_INS [dm6]	G	GAG	1.781e^-4	0.856	UTR_5_PRIME Cyp4g15
2R	2590093	2R_2590093_SNP [dm3] 2R_6702588_SNP [dm6]	C	T	1.791e^-4	0.856	SYNONYMOUS_CODING CG3409 UTR_3_PRIME CG45092	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2562470	2L_2562470_SNP [dm3] 2L_2562470_SNP [dm6]	T	C	1.796e^-4	0.856	DOWNSTREAM Cyp309a1 INTERGENIC
2L	7894538	2L_7894538_SNP [dm3] 2L_7894538_SNP [dm6]	G	A	1.807e^-4	0.856	SYNONYMOUS_CODING Snoo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11884010	3L_11884010_SNP [dm3] 3L_11890910_SNP [dm6]	A	G	1.809e^-4	0.856	INTRON CG44837
X	15645581	X_15645581_SNP [dm3] X_15751548_SNP [dm6]	T	G	1.824e^-4	0.856	UTR_3_PRIME CG8239 DOWNSTREAM Graf & 1 other
2R	13062830	2R_13062830_SNP [dm3] 2R_17175325_SNP [dm6]	G	A	1.826e^-4	0.856	INTERGENIC
3R	7929402	3R_7929402_SNP [dm3] 3R_12103680_SNP [dm6]	C	T	1.827e^-4	0.856	INTRON dpr17
2L	9440826	2L_9440826_SNP [dm3] 2L_9440826_SNP [dm6]	G	A	1.838e^-4	0.856	UPSTREAM CG33723 INTRON numb
X	5942441	X_5942441_SNP [dm3] X_6048408_SNP [dm6]	G	C	1.841e^-4	0.856	SYNONYMOUS_CODING CG5937	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10628858	3L_10628858_SNP [dm3] 3L_10635758_SNP [dm6]	G	A	1.846e^-4	0.856	SYNONYMOUS_CODING E_z_
2L	20109762	2L_20109762_INS [dm3] 2L_20109762_INS [dm6]	C	CCTGTGTACCT...	1.847e^-4	0.856	INTERGENIC	transposable element FlyBase
3R	10980948	3R_10980948_SNP [dm3] 3R_15155226_SNP [dm6]	C	T	1.848e^-4	0.856	INTRON Gyc88E
2R	19973994	2R_19973994_SNP [dm3] 2R_24086471_SNP [dm6]	A	G	1.851e^-4	0.856	UPSTREAM snama DOWNSTREAM CG16786 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
X	18884392	X_18884392_INS [dm3] X_18990359_INS [dm6]	T	TACACAT	1.854e^-4	0.856	INTRON CG43759	TF binding site mE1_TFBS_cad
2L	3694971	2L_3694971_SNP [dm3] 2L_3694971_SNP [dm6]	C	T	1.860e^-4	0.856	UTR_5_PRIME CG43165 UPSTREAM CR43364 DOWNSTREAM CG16713
2R	19199461	2R_19199461_SNP [dm3] 2R_23311938_SNP [dm6]	G	A	1.870e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	2689878	2L_2689878_INS [dm3] 2L_2689878_INS [dm6]	C	CTCAAGTCCCA...	1.876e^-4	0.856	INTRON CG31690
3R	1713121	3R_1713121_SNP [dm3] 3R_5887399_SNP [dm6]	A	G	1.877e^-4	0.856	INTRON CG34113
2L	14998036	2L_14998036_SNP [dm3] 2L_14998036_SNP [dm6]	T	C	1.890e^-4	0.856	UPSTREAM mol INTERGENIC
X	15283036	X_15283036_SNP [dm3] X_15389003_SNP [dm6]	C	T	1.894e^-4	0.856	UTR_3_PRIME Cngl
X	22065716	X_22065716_SNP [dm3] X_22663880_SNP [dm6]	T	A	1.897e^-4	0.856	INTRON CR44997
2L	11428386	2L_11428386_SNP [dm3] 2L_11428386_SNP [dm6]	T	C	1.899e^-4	0.856	INTERGENIC
3L	1069079	3L_1069079_SNP [dm3] 3L_1069079_SNP [dm6]	T	C	1.916e^-4	0.856	INTRON bab1
2L	12250889	2L_12250889_SNP [dm3] 2L_12250889_SNP [dm6]	G	A	1.917e^-4	0.856	INTRON aret
2L	14252811	2L_14252811_SNP [dm3] 2L_14252811_SNP [dm6]	C	A	1.926e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	2046067	2L_2046067_SNP [dm3] 2L_2046067_SNP [dm6]	A	T	1.927e^-4	0.856	SPLICE_SITE_ACCEPTOR Kebab NON_SYNONYMOUS_CODING Kebab SPLICE_SITE_REGION Kebab UPSTREAM CR45298 INTRON Kebab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9189922	2L_9189922_SNP [dm3] 2L_9189922_SNP [dm6]	C	T	1.929e^-4	0.856	INTRON tai	TF binding site mE1_TFBS_HSA
X	20351745	X_20351745_SNP [dm3] X_20480718_SNP [dm6]	G	A	1.938e^-4	0.856	INTRON RhoGAP19D	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	9095366	3R_9095366_SNP [dm3] 3R_13269644_SNP [dm6]	G	A	1.940e^-4	0.856	SYNONYMOUS_CODING CG8449 UTR_3_PRIME Su_var_3-7 DOWNSTREAM Su_var_3-7
3L	10189559	3L_10189559_SNP [dm3] 3L_10196459_SNP [dm6]	T	G	1.948e^-4	0.856	INTRON ect	TF binding site mE1_TFBS_chinmo
2L	11428404	2L_11428404_SNP [dm3] 2L_11428404_SNP [dm6]	C	A	1.957e^-4	0.856	INTERGENIC
2L	3396911	2L_3396911_SNP [dm3] 2L_3396911_SNP [dm6]	G	A	1.960e^-4	0.856	DOWNSTREAM CR44792 INTERGENIC
X	18890831	X_18890831_SNP [dm3] X_18996798_SNP [dm6]	G	C	1.962e^-4	0.856	INTRON CG43759	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19301628	2R_19301628_SNP [dm3] 2R_23414105_SNP [dm6]	G	A	1.963e^-4	0.856	INTRON CG9812
3R	18102984	3R_18102984_SNP [dm3] 3R_22277262_SNP [dm6]	T	A	1.974e^-4	0.856	INTRON SKIP
2L	11930045	2L_11930045_SNP [dm3] 2L_11930045_SNP [dm6]	C	T	1.981e^-4	0.856	INTERGENIC
2L	8121966	2L_8121966_SNP [dm3] 2L_8121966_SNP [dm6]	G	T	1.985e^-4	0.856	SYNONYMOUS_CODING mon2	TF binding site mE1_TFBS_cad
3R	11906476	3R_11906476_SNP [dm3] 3R_16080754_SNP [dm6]	C	T	1.985e^-4	0.856	NON_SYNONYMOUS_CODING CG32855 INTRON Mhcl	TF binding site mE1_TFBS_chinmo
X	17039023	X_17039023_SNP [dm3] X_17144990_SNP [dm6]	A	C	1.992e^-4	0.856	UPSTREAM snoRNA:Psi28S-1192d & 4 others DOWNSTREAM snoRNA:Psi18S-1854c & 4 others INTRON RpS5a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15898794	3L_15898794_SNP [dm3] 3L_15905694_SNP [dm6]	T	G	2.010e^-4	0.856	INTRON sff	TF binding site BDTNP1_TFBS_sna
2L	5666632	2L_5666632_SNP [dm3] 2L_5666632_SNP [dm6]	A	G	2.013e^-4	0.856	INTRON Hsp60C
3L	15388211	3L_15388211_SNP [dm3] 3L_15395111_SNP [dm6]	T	C	2.017e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	4012141	3L_4012141_SNP [dm3] 3L_4012141_SNP [dm6]	G	C	2.019e^-4	0.856	INTERGENIC
X	20933782	X_20933782_SNP [dm3] X_21062755_SNP [dm6]	C	T	2.022e^-4	0.856	UTR_3_PRIME CG32512 INTRON bves
3R	14701352	3R_14701352_SNP [dm3] 3R_18875630_SNP [dm6]	T	C	2.023e^-4	0.856	UTR_5_PRIME CG14298 UPSTREAM CG14298
X	2280734	X_2280734_SNP [dm3] X_2386701_SNP [dm6]	C	T	2.031e^-4	0.856	INTRON PsGEF	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19424480	X_19424480_SNP [dm3] X_19530447_SNP [dm6]	A	T	2.035e^-4	0.856	UTR_3_PRIME CoRest DOWNSTREAM CoRest & 1 other
2R	19973827	2R_19973827_SNP [dm3] 2R_24086304_SNP [dm6]	C	T	2.041e^-4	0.856	UPSTREAM snama DOWNSTREAM CG16786 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3R	17935365	3R_17935365_SNP [dm3] 3R_22109643_SNP [dm6]	A	T	2.046e^-4	0.856	INTRON CG5778	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	994936	2R_994936_SNP [dm3] 2R_5107431_SNP [dm6]	C	T	2.050e^-4	0.856	INTERGENIC	transposable element FlyBase
X	18040071	X_18040071_SNP [dm3] X_18146038_SNP [dm6]	A	G	2.063e^-4	0.856	INTERGENIC
3R	24495250	3R_24495250_SNP [dm3] 3R_28669528_SNP [dm6]	G	A	2.063e^-4	0.856	NON_SYNONYMOUS_CODING CG33346
3L	15235615	3L_15235615_SNP [dm3] 3L_15242515_SNP [dm6]	G	A	2.063e^-4	0.856	UTR_3_PRIME Tollo	TF binding site mE1_TFBS_HSA
3R	24268116	3R_24268116_SNP [dm3] 3R_28442394_SNP [dm6]	C	T	2.069e^-4	0.856	INTRON beat-VI
2L	14252803	2L_14252803_SNP [dm3] 2L_14252803_SNP [dm6]	G	C	2.076e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	904912	2R_904912_SNP [dm3] 2R_5017407_SNP [dm6]	G	A	2.077e^-4	0.856	INTRON Ir41a	TF binding site mE1_TFBS_cad
3L	2529014	3L_2529014_SNP [dm3] 3L_2529014_SNP [dm6]	G	C	2.079e^-4	0.856	INTRON Spn
3L	10638726	3L_10638726_SNP [dm3] 3L_10645626_SNP [dm6]	A	T	2.091e^-4	0.856	INTRON CG32066
3L	17739751	3L_17739751_SNP [dm3] 3L_17746651_SNP [dm6]	A	T	2.109e^-4	0.856	SYNONYMOUS_CODING CG6034 INTRON Ccn	TF binding site mE1_TFBS_sens
3L	3853698	3L_3853698_SNP [dm3] 3L_3853698_SNP [dm6]	A	G	2.114e^-4	0.856	INTRON Awh
2L	8650197	2L_8650197_SNP [dm3] 2L_8650197_SNP [dm6]	C	T	2.116e^-4	0.856	INTRON Sema-1a
2R	14350503	2R_14350503_SNP [dm3] 2R_18462998_SNP [dm6]	T	C	2.116e^-4	0.856	INTRON CG30116
3R	18273676	3R_18273676_SNP [dm3] 3R_22447954_SNP [dm6]	G	A	2.119e^-4	0.856	UPSTREAM CG34376 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2R	985904	2R_985904_SNP [dm3] 2R_5098399_SNP [dm6]	C	G	2.125e^-4	0.856	INTERGENIC	transposable element FlyBase
3R	20480761	3R_20480761_SNP [dm3] 3R_24655039_SNP [dm6]	C	T	2.130e^-4	0.856	UPSTREAM CG6695 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
X	15011430	X_15011430_SNP [dm3] X_15117397_SNP [dm6]	A	T	2.134e^-4	0.856	UPSTREAM Cyp4s3 INTERGENIC
3L	12397735	3L_12397735_SNP [dm3] 3L_12404635_SNP [dm6]	G	A	2.139e^-4	0.856	NON_SYNONYMOUS_CODING CG32103	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19626102	2R_19626102_SNP [dm3] 2R_23738579_SNP [dm6]	G	A	2.140e^-4	0.856	INTRON egl	TF binding site mE1_TFBS_chinmo
3L	2532551	3L_2532551_SNP [dm3] 3L_2532551_SNP [dm6]	T	C	2.140e^-4	0.856	INTRON Spn
2R	10884236	2R_10884236_SNP [dm3] 2R_14996731_SNP [dm6]	T	A	2.144e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	3607629	2L_3607629_SNP [dm3] 2L_3607629_SNP [dm6]	A	T	2.145e^-4	0.856	UPSTREAM odd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
3L	4012147	3L_4012147_SNP [dm3] 3L_4012147_SNP [dm6]	C	G	2.148e^-4	0.856	INTERGENIC
2R	14350597	2R_14350597_SNP [dm3] 2R_18463092_SNP [dm6]	C	T	2.151e^-4	0.856	INTRON CG30116
2L	19239472	2L_19239472_SNP [dm3] 2L_19239472_SNP [dm6]	C	T	2.152e^-4	0.856	INTERGENIC
3L	3684231	3L_3684231_SNP [dm3] 3L_3684231_SNP [dm6]	C	A	2.158e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6938971	3L_6938971_SNP [dm3] 3L_6945871_SNP [dm6]	A	T	2.158e^-4	0.856	INTRON tow	TF binding site mE1_TFBS_Kr
2L	6019083	2L_6019083_SNP [dm3] 2L_6019083_SNP [dm6]	A	T	2.158e^-4	0.856	NON_SYNONYMOUS_CODING H2.0	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_sens
3L	18890877	3L_18890877_SNP [dm3] 3L_18897777_SNP [dm6]	T	C	2.159e^-4	0.856	INTRON CG3902
2R	11298399	2R_11298399_SNP [dm3] 2R_15410894_SNP [dm6]	C	T	2.163e^-4	0.856	INTRON CG43729
2R	935930	2R_935930_SNP [dm3] 2R_5048425_SNP [dm6]	A	C	2.165e^-4	0.856	INTERGENIC	transposable element FlyBase
3L	15711997	3L_15711997_SNP [dm3] 3L_15718897_SNP [dm6]	T	C	2.174e^-4	0.856	SYNONYMOUS_CODING CG42570
3L	9411842	3L_9411842_SNP [dm3] 3L_9418742_SNP [dm6]	G	T	2.175e^-4	0.856	INTRON CG3967	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	792263	2L_792263_SNP [dm3] 2L_792263_SNP [dm6]	G	A	2.179e^-4	0.856	INTERGENIC
3R	12188260	3R_12188260_SNP [dm3] 3R_16362538_SNP [dm6]	A	C	2.182e^-4	0.856	INTRON CG14880
2L	13811810	2L_13811810_SNP [dm3] 2L_13811810_SNP [dm6]	T	G	2.208e^-4	0.856	UPSTREAM adat DOWNSTREAM CG16888 INTRON CG16865	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
2R	8658581	2R_8658581_SNP [dm3] 2R_12771076_SNP [dm6]	A	T	2.210e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	10868545	2R_10868545_SNP [dm3] 2R_14981040_SNP [dm6]	G	C	2.219e^-4	0.856	UPSTREAM pcs DOWNSTREAM ckn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Ubx
3L	3684951	3L_3684951_SNP [dm3] 3L_3684951_SNP [dm6]	C	T	2.220e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	13122361	X_13122361_SNP [dm3] X_13228328_SNP [dm6]	C	A	2.221e^-4	0.856	INTRON mew	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	7682784	X_7682784_SNP [dm3] X_7788751_SNP [dm6]	G	A	2.237e^-4	0.856	INTERGENIC
3L	10633325	3L_10633325_SNP [dm3] 3L_10640225_SNP [dm6]	T	A	2.238e^-4	0.856	DOWNSTREAM CG32066 & 2 others INTERGENIC
2R	19297860	2R_19297860_SNP [dm3] 2R_23410337_SNP [dm6]	C	T	2.250e^-4	0.856	INTERGENIC
2L	14249639	2L_14249639_SNP [dm3] 2L_14249639_SNP [dm6]	A	G	2.254e^-4	0.856	INTERGENIC
3L	12474178	3L_12474178_SNP [dm3] 3L_12481078_SNP [dm6]	G	A	2.268e^-4	0.856	INTRON CG10663
3R	15093201	3R_15093201_DEL [dm3] 3R_19267479_DEL [dm6]	AATACTGTTA	A	2.272e^-4	0.856	INTERGENIC
2L	6194482	2L_6194482_SNP [dm3] 2L_6194482_SNP [dm6]	C	T	2.287e^-4	0.856	INTRON CG34380	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19364725	2L_19364725_SNP [dm3] 2L_19364725_SNP [dm6]	T	A	2.291e^-4	0.856	INTRON CG13086
X	21903522	X_21903522_SNP [dm3] X_22501686_SNP [dm6]	G	C	2.300e^-4	0.856	NON_SYNONYMOUS_CODING l_1_G0196 INTRON l_1_G0196	TF binding site mE1_TFBS_sens
3R	14051804	3R_14051804_SNP [dm3] 3R_18226082_SNP [dm6]	A	G	2.301e^-4	0.856	UTR_5_PRIME CG7168 UPSTREAM Mdh2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	2048038	2L_2048038_SNP [dm3] 2L_2048038_SNP [dm6]	A	G	2.305e^-4	0.856	UTR_3_PRIME Kebab DOWNSTREAM Kebab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15504442	3L_15504442_DEL [dm3] 3L_15511342_DEL [dm6]	AAATA	A	2.305e^-4	0.856	UPSTREAM Eip71CD DOWNSTREAM gdl-ORF39 & 1 other INTRON Eip71CD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	21093842	X_21093842_SNP [dm3] X_21222815_SNP [dm6]	A	G	2.306e^-4	0.856	INTRON CG32521	TF binding site mE1_TFBS_chinmo
2L	17466026	2L_17466026_SNP [dm3] 2L_17466026_SNP [dm6]	G	A	2.315e^-4	0.856	INTRON BicD	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
3L	4012042	3L_4012042_SNP [dm3] 3L_4012042_SNP [dm6]	A	T	2.320e^-4	0.856	INTERGENIC
2L	7895439	2L_7895439_SNP [dm3] 2L_7895439_SNP [dm6]	G	A	2.345e^-4	0.856	NON_SYNONYMOUS_CODING Snoo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3605094	2L_3605094_SNP [dm3] 2L_3605094_SNP [dm6]	G	A	2.347e^-4	0.856	NON_SYNONYMOUS_CODING odd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	9287029	2L_9287029_SNP [dm3] 2L_9287029_SNP [dm6]	T	C	2.347e^-4	0.856	INTRON Ggamma30A
X	22065719	X_22065719_INS [dm3] X_22663883_INS [dm6]	G	GTG	2.361e^-4	0.856	INTRON CR44997
2R	3824500	2R_3824500_SNP [dm3] 2R_7936995_SNP [dm6]	T	A	2.365e^-4	0.856	SYNONYMOUS_CODING CG8728 DOWNSTREAM drosha	TF binding site mE1_TFBS_chinmo
X	4292919	X_4292919_SNP [dm3] X_4398886_SNP [dm6]	C	T	2.368e^-4	0.856	INTRON CR32773
3R	14707478	3R_14707478_SNP [dm3] 3R_18881756_SNP [dm6]	C	T	2.386e^-4	0.856	INTERGENIC
3L	1120019	3L_1120019_SNP [dm3] 3L_1120019_SNP [dm6]	G	T	2.395e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_cad
2L	17466061	2L_17466061_SNP [dm3] 2L_17466061_SNP [dm6]	A	T	2.398e^-4	0.856	INTRON BicD	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
2L	11939564	2L_11939564_SNP [dm3] 2L_11939564_SNP [dm6]	G	A	2.400e^-4	0.856	DOWNSTREAM Or33c INTERGENIC
3L	2320109	3L_2320109_SNP [dm3] 3L_2320109_SNP [dm6]	C	T	2.402e^-4	0.856	UPSTREAM CR45426 INTERGENIC
X	16561556	X_16561556_SNP [dm3] X_16667523_SNP [dm6]	A	G	2.402e^-4	0.856	SYNONYMOUS_CODING r	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9095372	3R_9095372_SNP [dm3] 3R_13269650_SNP [dm6]	A	T	2.406e^-4	0.856	SYNONYMOUS_CODING CG8449 UTR_3_PRIME Su_var_3-7 DOWNSTREAM Su_var_3-7
2R	17960542	2R_17960542_SNP [dm3] 2R_22073037_SNP [dm6]	A	G	2.409e^-4	0.856	SYNONYMOUS_CODING CG11474 DOWNSTREAM CG2921
3R	11327556	3R_11327556_SNP [dm3] 3R_15501834_SNP [dm6]	A	T	2.410e^-4	0.856	INTERGENIC
2L	12625972	2L_12625972_SNP [dm3] 2L_12625972_SNP [dm6]	G	A	2.412e^-4	0.856	NON_SYNONYMOUS_CODING nub INTRON Ref2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16723588	3L_16723588_SNP [dm3] 3L_16730488_SNP [dm6]	A	C	2.422e^-4	0.856	NON_SYNONYMOUS_CODING Dbp73D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	2287595	3L_2287595_SNP [dm3] 3L_2287595_SNP [dm6]	C	T	2.433e^-4	0.856	INTRON MsR2
3L	2299416	3L_2299416_SNP [dm3] 3L_2299416_SNP [dm6]	G	C	2.435e^-4	0.856	INTRON MsR2	TF binding site mE1_TFBS_cad
2L	14565545	2L_14565545_SNP [dm3] 2L_14565545_SNP [dm6]	G	T	2.436e^-4	0.856	INTERGENIC
3L	18815613	3L_18815613_SNP [dm3] 3L_18822513_SNP [dm6]	A	T	2.438e^-4	0.856	UPSTREAM Cat DOWNSTREAM HipHop INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	7444482	X_7444482_SNP [dm3] X_7550449_SNP [dm6]	G	A	2.439e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5782179	3L_5782179_SNP [dm3] 3L_5789079_SNP [dm6]	A	C	2.448e^-4	0.856	DOWNSTREAM Bre1 INTERGENIC
3R	9765103	3R_9765103_SNP [dm3] 3R_13939381_SNP [dm6]	T	A	2.452e^-4	0.856	INTERGENIC
3R	19697594	3R_19697594_SNP [dm3] 3R_23871872_SNP [dm6]	A	G	2.457e^-4	0.856	INTRON Pli
2L	2850485	2L_2850485_SNP [dm3] 2L_2850485_SNP [dm6]	G	A	2.459e^-4	0.856	SYNONYMOUS_CODING CG3104	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14085437	2R_14085437_SNP [dm3] 2R_18197932_SNP [dm6]	A	G	2.462e^-4	0.856	INTERGENIC
2L	9253255	2L_9253255_SNP [dm3] 2L_9253255_SNP [dm6]	A	G	2.468e^-4	0.856	UPSTREAM borr DOWNSTREAM lectin-30A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	7894558	2L_7894558_SNP [dm3] 2L_7894558_SNP [dm6]	G	A	2.471e^-4	0.856	SYNONYMOUS_CODING Snoo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4212122	2L_4212122_SNP [dm3] 2L_4212122_SNP [dm6]	C	T	2.472e^-4	0.856	INTRON ft	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3341507	2L_3341507_SNP [dm3] 2L_3341507_SNP [dm6]	G	T	2.477e^-4	0.856	INTRON E23
3L	7998576	3L_7998576_SNP [dm3] 3L_8005476_SNP [dm6]	G	T	2.484e^-4	0.856	INTRON nmo	TF binding site BDTNP1_TFBS_dl
3R	13550724	3R_13550724_SNP [dm3] 3R_17725002_SNP [dm6]	C	A	2.495e^-4	0.856	UTR_5_PRIME Atg8b UPSTREAM Lgr1
2L	15024930	2L_15024930_SNP [dm3] 2L_15024930_SNP [dm6]	C	T	2.495e^-4	0.856	INTRON GABA-B-R1
3L	2180910	3L_2180910_SNP [dm3] 3L_2180910_SNP [dm6]	T	A	2.498e^-4	0.856	INTERGENIC
3R	11308239	3R_11308239_SNP [dm3] 3R_15482517_SNP [dm6]	A	C	2.499e^-4	0.856	SYNONYMOUS_CODING CG14870 UPSTREAM Rh6	TF binding site mE1_TFBS_chinmo
2L	13909216	2L_13909216_SNP [dm3] 2L_13909216_SNP [dm6]	G	T	2.503e^-4	0.856	UPSTREAM Ance-2 DOWNSTREAM Ance INTERGENIC
3L	10636730	3L_10636730_SNP [dm3] 3L_10643630_SNP [dm6]	G	A	2.509e^-4	0.856	DOWNSTREAM CG14154 INTRON CG32066 & 1 other
3L	665306	3L_665306_INS [dm3] 3L_665306_INS [dm6]	A	AGCTGCTTG	2.510e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_sens
2R	11299352	2R_11299352_SNP [dm3] 2R_15411847_SNP [dm6]	G	A	2.515e^-4	0.856	INTRON CG43729
2L	14997717	2L_14997717_SNP [dm3] 2L_14997717_SNP [dm6]	A	G	2.520e^-4	0.856	UPSTREAM mol INTERGENIC	TF binding site mE1_TFBS_Trl
2L	7895243	2L_7895243_SNP [dm3] 2L_7895243_SNP [dm6]	G	A	2.524e^-4	0.856	SYNONYMOUS_CODING Snoo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1919880	3L_1919880_SNP [dm3] 3L_1919880_SNP [dm6]	A	G	2.529e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	9035355	2L_9035355_SNP [dm3] 2L_9035355_SNP [dm6]	T	A	2.532e^-4	0.856	INTERGENIC
3L	12879529	3L_12879529_SNP [dm3] 3L_12886429_SNP [dm6]	A	C	2.542e^-4	0.856	NON_SYNONYMOUS_CODING CG14120	TF binding site mE1_TFBS_sens
3L	13744202	3L_13744202_SNP [dm3] 3L_13751102_SNP [dm6]	T	C	2.546e^-4	0.856	INTRON bru-3
2L	9348100	2L_9348100_SNP [dm3] 2L_9348100_SNP [dm6]	A	G	2.547e^-4	0.856	DOWNSTREAM CR44802 INTERGENIC
X	19505480	X_19505480_SNP [dm3] X_19611447_SNP [dm6]	T	A	2.552e^-4	0.856	UPSTREAM Tyler & 1 other DOWNSTREAM CG14207 INTERGENIC
2L	4589702	2L_4589702_SNP [dm3] 2L_4589702_SNP [dm6]	G	A	2.554e^-4	0.856	INTRON dp
2R	8669121	2R_8669121_SNP [dm3] 2R_12781616_SNP [dm6]	A	C	2.558e^-4	0.856	INTRON sca	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	2544390	3L_2544390_SNP [dm3] 3L_2544390_SNP [dm6]	C	A	2.561e^-4	0.856	INTRON Spn
2R	7074632	2R_7074632_SNP [dm3] 2R_11187127_SNP [dm6]	T	G	2.563e^-4	0.856	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	10912648	3L_10912648_SNP [dm3] 3L_10919548_SNP [dm6]	A	T	2.567e^-4	0.856	INTERGENIC
X	5230405	X_5230405_SNP [dm3] X_5336372_SNP [dm6]	T	G	2.590e^-4	0.856	INTERGENIC
2R	12493305	2R_12493305_SNP [dm3] 2R_16605800_SNP [dm6]	A	C	2.596e^-4	0.856	INTERGENIC
2R	952507	2R_952507_SNP [dm3] 2R_5065002_SNP [dm6]	G	A	2.598e^-4	0.856	DOWNSTREAM TpnC41C INTERGENIC
2L	8799999	2L_8799999_SNP [dm3] 2L_8799999_SNP [dm6]	C	T	2.600e^-4	0.856	INTERGENIC
2R	14126005	2R_14126005_SNP [dm3] 2R_18238500_SNP [dm6]	G	A	2.607e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_inv
2L	9018831	2L_9018831_SNP [dm3] 2L_9018831_SNP [dm6]	A	C	2.607e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	18730271	2L_18730271_SNP [dm3] 2L_18730271_SNP [dm6]	C	T	2.609e^-4	0.856	INTRON CG10348
3L	6942666	3L_6942666_SNP [dm3] 3L_6949566_SNP [dm6]	A	G	2.613e^-4	0.856	UTR_3_PRIME CG10077 DOWNSTREAM tow
2L	5635304	2L_5635304_SNP [dm3] 2L_5635304_SNP [dm6]	A	C	2.616e^-4	0.856	INTRON CG31646	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	7894886	2L_7894886_SNP [dm3] 2L_7894886_SNP [dm6]	C	T	2.637e^-4	0.856	SYNONYMOUS_CODING Snoo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3675512	3L_3675512_SNP [dm3] 3L_3675512_SNP [dm6]	A	C	2.644e^-4	0.856	INTERGENIC
X	13122990	X_13122990_SNP [dm3] X_13228957_SNP [dm6]	A	C	2.647e^-4	0.856	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
X	13123133	X_13123133_SNP [dm3] X_13229100_SNP [dm6]	A	G	2.648e^-4	0.856	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	2528080	3L_2528080_SNP [dm3] 3L_2528080_SNP [dm6]	G	A	2.655e^-4	0.856	INTRON Spn
2L	13810340	2L_13810340_SNP [dm3] 2L_13810340_SNP [dm6]	C	T	2.656e^-4	0.856	NON_SYNONYMOUS_CODING adat DOWNSTREAM CAH1	TF binding site mE1_TFBS_sens
2L	3791493	2L_3791493_SNP [dm3] 2L_3791493_SNP [dm6]	T	G	2.658e^-4	0.856	INTRON CG3921
3R	25777437	3R_25777437_DEL [dm3] 3R_29951715_DEL [dm6]	GG	G	2.660e^-4	0.856	INTRON TkR99D	TF binding site mE1_TFBS_chinmo
3L	3675546	3L_3675546_SNP [dm3] 3L_3675546_SNP [dm6]	A	G	2.660e^-4	0.856	INTERGENIC
2L	13811628	2L_13811628_SNP [dm3] 2L_13811628_SNP [dm6]	G	A	2.660e^-4	0.856	UTR_5_PRIME CG16865 UPSTREAM adat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	16019715	X_16019715_SNP [dm3] X_16125682_SNP [dm6]	T	C	2.676e^-4	0.856	INTRON disco-r
X	10087356	X_10087356_SNP [dm3] X_10193323_SNP [dm6]	T	C	2.676e^-4	0.856	UTR_3_PRIME CG43902 INTRON CR44894
3L	10633345	3L_10633345_SNP [dm3] 3L_10640245_SNP [dm6]	G	T	2.678e^-4	0.856	DOWNSTREAM CG32066 & 2 others INTERGENIC
3L	15662294	3L_15662294_SNP [dm3] 3L_15669194_SNP [dm6]	T	G	2.679e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	20557214	2L_20557214_SNP [dm3] 2L_20557214_SNP [dm6]	G	A	2.690e^-4	0.856	INTERGENIC
X	13673567	X_13673567_SNP [dm3] X_13779534_SNP [dm6]	C	A	2.695e^-4	0.856	DOWNSTREAM CtsB1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14707459	3R_14707459_INS [dm3] 3R_18881737_INS [dm6]	G	GGAACTCTT	2.696e^-4	0.856	INTERGENIC
2L	4191536	2L_4191536_SNP [dm3] 2L_4191536_SNP [dm6]	G	A	2.711e^-4	0.856	INTRON CG3714
3R	17420295	3R_17420295_SNP [dm3] 3R_21594573_SNP [dm6]	C	G	2.713e^-4	0.856	INTRON InR EXON CR43653	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5725150	2L_5725150_SNP [dm3] 2L_5725150_SNP [dm6]	A	G	2.719e^-4	0.856	UTR_5_PRIME CG11030	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	9213841	2L_9213841_SNP [dm3] 2L_9213841_SNP [dm6]	A	G	2.723e^-4	0.856	INTRON tai
3R	18824029	3R_18824029_SNP [dm3] 3R_22998307_SNP [dm6]	A	G	2.726e^-4	0.856	UTR_5_PRIME Nha2 DOWNSTREAM CR43454
X	3320777	X_3320777_SNP [dm3] X_3426744_SNP [dm6]	C	G	2.732e^-4	0.856	DOWNSTREAM tRNA:CR32493 INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	2757914	3L_2757914_SNP [dm3] 3L_2757914_SNP [dm6]	T	A	2.734e^-4	0.856	INTRON Mrtf	TF binding site BDTNP1_TFBS_twi
3L	19190825	3L_19190825_SNP [dm3] 3L_19197725_SNP [dm6]	G	A	2.736e^-4	0.856	INTRON fz2	TF binding site mE1_TFBS_inv
2R	13056980	2R_13056980_SNP [dm3] 2R_17169475_SNP [dm6]	T	C	2.740e^-4	0.856	INTERGENIC
X	13123106	X_13123106_DEL [dm3] X_13229073_DEL [dm6]	TACAT	T	2.752e^-4	0.856	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	3973368	X_3973368_SNP [dm3] X_4079335_SNP [dm6]	A	T	2.763e^-4	0.856	INTRON CG43689	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19443891	2R_19443891_SNP [dm3] 2R_23556368_SNP [dm6]	G	A	2.766e^-4	0.856	UPSTREAM ItgalphaPS5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6938459	3L_6938459_SNP [dm3] 3L_6945359_SNP [dm6]	C	A	2.767e^-4	0.856	INTRON tow	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	3014204	3L_3014204_SNP [dm3] 3L_3014204_SNP [dm6]	A	T	2.769e^-4	0.856	DOWNSTREAM CG32488 INTERGENIC
3R	12526438	3R_12526438_SNP [dm3] 3R_16700716_SNP [dm6]	T	G	2.772e^-4	0.856	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3L	3684950	3L_3684950_SNP [dm3] 3L_3684950_SNP [dm6]	G	T	2.781e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7112031	2R_7112031_SNP [dm3] 2R_11224526_SNP [dm6]	T	C	2.785e^-4	0.856	INTRON CG7737	TF binding site mE1_TFBS_cad
2L	20778101	2L_20778101_SNP [dm3] 2L_20778101_SNP [dm6]	A	T	2.791e^-4	0.856	INTRON cad	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5117817	2L_5117817_SNP [dm3] 2L_5117817_SNP [dm6]	A	T	2.797e^-4	0.856	INTRON Msp300
3L	834113	3L_834113_SNP [dm3] 3L_834113_SNP [dm6]	C	T	2.812e^-4	0.856	UTR_5_PRIME CG42553 UPSTREAM snoRNA:Psi18S-1086 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3R	2174486	3R_2174486_SNP [dm3] 3R_6348764_SNP [dm6]	C	T	2.828e^-4	0.856	UPSTREAM Hr83 INTERGENIC
2L	10033561	2L_10033561_SNP [dm3] 2L_10033561_SNP [dm6]	C	G	2.828e^-4	0.856	INTRON obst-B
3R	23308674	3R_23308674_SNP [dm3] 3R_27482952_SNP [dm6]	G	A	2.828e^-4	0.856	DOWNSTREAM Cyp6a18 INTERGENIC
2L	7975693	2L_7975693_SNP [dm3] 2L_7975693_SNP [dm6]	G	A	2.829e^-4	0.856	SYNONYMOUS_CODING Snoo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	14997454	2L_14997454_SNP [dm3] 2L_14997454_SNP [dm6]	C	G	2.830e^-4	0.856	UTR_5_PRIME mol INTRON mol	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	3853697	3L_3853697_SNP [dm3] 3L_3853697_SNP [dm6]	A	T	2.832e^-4	0.856	INTRON Awh
3L	1046221	3L_1046221_SNP [dm3] 3L_1046221_SNP [dm6]	T	A	2.835e^-4	0.856	INTRON bab1
3L	6938431	3L_6938431_SNP [dm3] 3L_6945331_SNP [dm6]	A	T	2.836e^-4	0.856	INTRON tow	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	8128601	3R_8128601_SNP [dm3] 3R_12302879_SNP [dm6]	C	A	2.847e^-4	0.856	DOWNSTREAM svp INTERGENIC	TF binding site mE1_TFBS_inv
2R	986790	2R_986790_SNP [dm3] 2R_5099285_SNP [dm6]	T	A	2.853e^-4	0.856	INTERGENIC	transposable element FlyBase
2R	990522	2R_990522_SNP [dm3] 2R_5103017_SNP [dm6]	G	C	2.853e^-4	0.856	INTERGENIC	transposable element FlyBase
3L	22000079	3L_22000079_SNP [dm3] 3L_22006979_SNP [dm6]	A	T	2.860e^-4	0.856	INTERGENIC
2L	9014607	2L_9014607_SNP [dm3] 2L_9014607_SNP [dm6]	T	C	2.862e^-4	0.856	UPSTREAM Rcd-1r DOWNSTREAM CG13102 INTERGENIC
2L	1907678	2L_1907678_SNP [dm3] 2L_1907678_SNP [dm6]	G	A	2.864e^-4	0.856	INTRON CG7337
2R	8892517	2R_8892517_SNP [dm3] 2R_13005012_SNP [dm6]	T	C	2.864e^-4	0.856	INTRON Su_z_2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	832955	3L_832955_SNP [dm3] 3L_832955_SNP [dm6]	C	A	2.869e^-4	0.856	START_GAINED CG13900 UTR_5_PRIME CG13900 UPSTREAM snoRNA:Psi18S-110 & 1 other DOWNSTREAM snoRNA:Psi18S-1086	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	1095870	3L_1095870_SNP [dm3] 3L_1095870_SNP [dm6]	C	T	2.871e^-4	0.856	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9739780	2R_9739780_SNP [dm3] 2R_13852275_SNP [dm6]	A	G	2.873e^-4	0.856	SYNONYMOUS_CODING CG30485 DOWNSTREAM CG6543
2R	992560	2R_992560_SNP [dm3] 2R_5105055_SNP [dm6]	T	A	2.877e^-4	0.856	INTERGENIC	transposable element FlyBase
3R	26218354	3R_26218354_SNP [dm3] 3R_30392632_SNP [dm6]	A	T	2.879e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6859205	2L_6859205_SNP [dm3] 2L_6859205_SNP [dm6]	T	A	2.882e^-4	0.856	SYNONYMOUS_CODING l_2_k09022	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	930295	2R_930295_SNP [dm3] 2R_5042790_SNP [dm6]	T	C	2.885e^-4	0.856	INTERGENIC	transposable element FlyBase
2R	8669015	2R_8669015_SNP [dm3] 2R_12781510_SNP [dm6]	A	G	2.885e^-4	0.856	INTRON sca	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	952567	2R_952567_SNP [dm3] 2R_5065062_SNP [dm6]	T	G	2.888e^-4	0.856	DOWNSTREAM TpnC41C INTERGENIC
3R	10981584	3R_10981584_SNP [dm3] 3R_15155862_SNP [dm6]	C	G	2.897e^-4	0.856	INTRON Gyc88E
X	13378891	X_13378891_SNP [dm3] X_13484858_SNP [dm6]	G	C	2.914e^-4	0.856	INTRON Neto	TF binding site mE1_TFBS_sbb
2L	3489673	2L_3489673_SNP [dm3] 2L_3489673_SNP [dm6]	G	A	2.916e^-4	0.856	INTRON CG15414
X	21904818	X_21904818_INS [dm3] X_22502982_INS [dm6]	T	TCATTTGATTT...	2.918e^-4	0.856	INTRON l_1_G0196
3R	21889122	3R_21889122_SNP [dm3] 3R_26063400_SNP [dm6]	C	G	2.924e^-4	0.856	UPSTREAM CG14551 INTERGENIC
3R	11270162	3R_11270162_SNP [dm3] 3R_15444440_SNP [dm6]	G	A	2.928e^-4	0.856	SYNONYMOUS_CODING AdamTS-A	TF binding site mE1_TFBS_cad
2L	9018478	2L_9018478_SNP [dm3] 2L_9018478_SNP [dm6]	T	C	2.928e^-4	0.856	INTERGENIC
X	12383597	X_12383597_SNP [dm3] X_12489564_SNP [dm6]	T	A	2.930e^-4	0.856	UPSTREAM Lsp1alpha DOWNSTREAM Cpr11A INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	4354771	3L_4354771_SNP [dm3] 3L_4354771_SNP [dm6]	C	A	2.939e^-4	0.856	INTRON Cip4
3L	17592382	3L_17592382_SNP [dm3] 3L_17599282_SNP [dm6]	T	G	2.943e^-4	0.856	UTR_5_PRIME Eip74EF
3L	12083493	3L_12083493_SNP [dm3] 3L_12090393_SNP [dm6]	A	T	2.946e^-4	0.856	INTERGENIC
X	4440920	X_4440920_SNP [dm3] X_4546887_SNP [dm6]	A	G	2.951e^-4	0.856	INTRON CR32773 & 1 other	TF binding site mE1_TFBS_inv
3L	17592383	3L_17592383_SNP [dm3] 3L_17599283_SNP [dm6]	T	A	2.966e^-4	0.856	UTR_5_PRIME Eip74EF
2R	8992311	2R_8992311_SNP [dm3] 2R_13104806_SNP [dm6]	T	A	2.972e^-4	0.856	NON_SYNONYMOUS_CODING CG44341
2L	10074325	2L_10074325_SNP [dm3] 2L_10074325_SNP [dm6]	A	G	2.972e^-4	0.856	INTRON CG44153
3R	24548436	3R_24548436_SNP [dm3] 3R_28722714_SNP [dm6]	T	C	2.982e^-4	0.856	INTRON htt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	17432208	X_17432208_SNP [dm3] X_17538175_SNP [dm6]	A	T	2.983e^-4	0.856	INTRON CG43658
2R	7074478	2R_7074478_SNP [dm3] 2R_11186973_SNP [dm6]	T	G	2.984e^-4	0.856	INTRON shn
X	21902258	X_21902258_SNP [dm3] X_22500422_SNP [dm6]	A	T	2.989e^-4	0.856	INTRON l_1_G0196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14051553	3R_14051553_SNP [dm3] 3R_18225831_SNP [dm6]	A	C	2.994e^-4	0.856	SPLICE_SITE_REGION CG7168 UTR_5_PRIME CG7168 UPSTREAM Mdh2 DOWNSTREAM CG7993	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21888662	3R_21888662_SNP [dm3] 3R_26062940_SNP [dm6]	T	A	2.995e^-4	0.856	UTR_5_PRIME CG14551 UPSTREAM CG14551
2R	1032492	2R_1032492_DEL [dm3] 2R_5144987_DEL [dm6]	TTCTGCTTTAGAATCA...	T	2.996e^-4	0.856	INTRON Atf6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	986126	2R_986126_SNP [dm3] 2R_5098621_SNP [dm6]	C	G	3.004e^-4	0.856	INTERGENIC
2R	988067	2R_988067_SNP [dm3] 2R_5100562_SNP [dm6]	G	A	3.014e^-4	0.856	INTERGENIC	transposable element FlyBase
3R	26079351	3R_26079351_SNP [dm3] 3R_30253629_SNP [dm6]	C	A	3.018e^-4	0.856	DOWNSTREAM CG9682 INTRON CG18404
2L	2111329	2L_2111329_INS [dm3] 2L_2111329_INS [dm6]	A	AA	3.018e^-4	0.856	INTERGENIC
X	9561289	X_9561289_DEL [dm3] X_9667256_DEL [dm6]	TCT	T	3.026e^-4	0.856	UTR_3_PRIME nej
2R	2636647	2R_2636647_SNP [dm3] 2R_6749142_SNP [dm6]	G	T	3.028e^-4	0.856	UPSTREAM Eb1 DOWNSTREAM CG3267 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_Trl
3L	12149711	3L_12149711_SNP [dm3] 3L_12156611_SNP [dm6]	A	G	3.039e^-4	0.856	UTR_3_PRIME Nrx-IV DOWNSTREAM CG9760
3R	24495255	3R_24495255_SNP [dm3] 3R_28669533_SNP [dm6]	G	A	3.048e^-4	0.856	SYNONYMOUS_CODING CG33346
X	9560892	X_9560892_SNP [dm3] X_9666859_SNP [dm6]	A	G	3.049e^-4	0.856	UTR_3_PRIME nej
3R	24727548	3R_24727548_SNP [dm3] 3R_28901826_SNP [dm6]	A	G	3.050e^-4	0.856	UPSTREAM Doa INTRON Doa	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7887409	2L_7887409_SNP [dm3] 2L_7887409_SNP [dm6]	A	G	3.055e^-4	0.856	UTR_5_PRIME CG7102 DOWNSTREAM Spn28Da	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	3457720	X_3457720_SNP [dm3] X_3563687_SNP [dm6]	T	C	3.068e^-4	0.856	INTRON CG32791 & 1 other
3L	1578645	3L_1578645_SNP [dm3] 3L_1578645_SNP [dm6]	G	A	3.071e^-4	0.856	INTRON CG13917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_jumu
3L	12544378	3L_12544378_SNP [dm3] 3L_12551278_SNP [dm6]	T	A	3.072e^-4	0.856	INTRON sowah	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	19505479	X_19505479_SNP [dm3] X_19611446_SNP [dm6]	T	A	3.072e^-4	0.856	UPSTREAM Tyler & 1 other DOWNSTREAM CG14207 INTERGENIC
2R	976909	2R_976909_DEL [dm3] 2R_5089404_DEL [dm6]	AACTA	A	3.073e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18823459	3R_18823459_SNP [dm3] 3R_22997737_SNP [dm6]	G	T	3.076e^-4	0.856	SYNONYMOUS_CODING Nha2 EXON CR43454
2L	10076464	2L_10076464_SNP [dm3] 2L_10076464_SNP [dm6]	A	C	3.076e^-4	0.856	INTRON CG44153
3L	832953	3L_832953_SNP [dm3] 3L_832953_SNP [dm6]	C	T	3.081e^-4	0.856	UTR_5_PRIME CG13900 UPSTREAM snoRNA:Psi18S-110 & 1 other DOWNSTREAM snoRNA:Psi18S-1086	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2L	4296537	2L_4296537_SNP [dm3] 2L_4296537_SNP [dm6]	G	A	3.085e^-4	0.856	INTRON tutl
3R	25095017	3R_25095017_SNP [dm3] 3R_29269295_SNP [dm6]	A	G	3.091e^-4	0.856	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	4576588	3L_4576588_SNP [dm3] 3L_4576588_SNP [dm6]	T	A	3.103e^-4	0.856	INTRON CG42540
3R	12525445	3R_12525445_SNP [dm3] 3R_16699723_SNP [dm6]	G	A	3.109e^-4	0.856	INTRON Ubx	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	11998661	2R_11998661_SNP [dm3] 2R_16111156_SNP [dm6]	A	C	3.121e^-4	0.856	INTRON Asph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10616448	3L_10616448_SNP [dm3] 3L_10623348_SNP [dm6]	G	A	3.122e^-4	0.856	SYNONYMOUS_CODING CG42521
3L	13924600	3L_13924600_SNP [dm3] 3L_13931500_SNP [dm6]	T	C	3.126e^-4	0.856	INTRON Gl
3R	24491929	3R_24491929_SNP [dm3] 3R_28666207_SNP [dm6]	A	C	3.134e^-4	0.856	INTERGENIC
3L	1847192	3L_1847192_SNP [dm3] 3L_1847192_SNP [dm6]	T	C	3.142e^-4	0.856	INTERGENIC
2L	2721456	2L_2721456_SNP [dm3] 2L_2721456_SNP [dm6]	C	T	3.143e^-4	0.856	INTERGENIC
3R	12537809	3R_12537809_DEL [dm3] 3R_16712087_DEL [dm6]	CTCTGTTGGCGTC...	C	3.145e^-4	0.856	INTRON Ubx
2R	8669368	2R_8669368_SNP [dm3] 2R_12781863_SNP [dm6]	A	T	3.145e^-4	0.856	INTRON sca	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	9025807	2L_9025807_SNP [dm3] 2L_9025807_SNP [dm6]	C	T	3.151e^-4	0.856	UPSTREAM CG9582 INTRON CG9582 EXON CR44352
2L	1149764	2L_1149764_SNP [dm3] 2L_1149764_SNP [dm6]	T	C	3.165e^-4	0.856	SYNONYMOUS_CODING Tfb4 DOWNSTREAM CG4749	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2302071	3L_2302071_SNP [dm3] 3L_2302071_SNP [dm6]	C	T	3.166e^-4	0.856	INTERGENIC
3L	5782180	3L_5782180_SNP [dm3] 3L_5789080_SNP [dm6]	C	A	3.177e^-4	0.856	DOWNSTREAM Bre1 INTERGENIC
2L	7895222	2L_7895222_SNP [dm3] 2L_7895222_SNP [dm6]	A	G	3.179e^-4	0.856	SYNONYMOUS_CODING Snoo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10892423	3L_10892423_SNP [dm3] 3L_10899323_SNP [dm6]	T	G	3.181e^-4	0.856	UPSTREAM Aps INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	16024475	2R_16024475_SNP [dm3] 2R_20136970_SNP [dm6]	C	T	3.183e^-4	0.856	UPSTREAM CR44635 & 1 other EXON CR44634
3R	14707601	3R_14707601_SNP [dm3] 3R_18881879_SNP [dm6]	A	G	3.184e^-4	0.856	INTERGENIC
X	14799722	X_14799722_SNP [dm3] X_14905689_SNP [dm6]	A	G	3.185e^-4	0.856	UPSTREAM CG9512 DOWNSTREAM CG9509 INTRON Flo2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19434356	2R_19434356_SNP [dm3] 2R_23546833_SNP [dm6]	A	G	3.185e^-4	0.856	INTRON wmd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	11308253	3R_11308253_SNP [dm3] 3R_15482531_SNP [dm6]	C	G	3.187e^-4	0.856	NON_SYNONYMOUS_CODING CG14870 UPSTREAM Rh6	TF binding site mE1_TFBS_chinmo
2R	7430295	2R_7430295_SNP [dm3] 2R_11542790_SNP [dm6]	C	T	3.188e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9472895	2L_9472895_SNP [dm3] 2L_9472895_SNP [dm6]	G	T	3.196e^-4	0.856	INTERGENIC
3R	25019909	3R_25019909_SNP [dm3] 3R_29194187_SNP [dm6]	A	G	3.197e^-4	0.856	INTRON CG14509
2L	14964856	2L_14964856_SNP [dm3] 2L_14964856_SNP [dm6]	A	C	3.235e^-4	0.856	INTRON CG42313
3L	1102263	3L_1102263_SNP [dm3] 3L_1102263_SNP [dm6]	C	T	3.238e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	5620678	2L_5620678_SNP [dm3] 2L_5620678_SNP [dm6]	G	T	3.246e^-4	0.856	UTR_3_PRIME Cyp6a16 UPSTREAM CR44796 DOWNSTREAM Cyp6a16
2L	13119010	2L_13119010_SNP [dm3] 2L_13119010_SNP [dm6]	A	G	3.249e^-4	0.856	UPSTREAM CG43050 EXON CR44198
2L	4078350	2L_4078350_INS [dm3] 2L_4078350_INS [dm6]	T	TTGT	3.254e^-4	0.856	INTRON ed
2L	7975474	2L_7975474_SNP [dm3] 2L_7975474_SNP [dm6]	A	G	3.263e^-4	0.856	SYNONYMOUS_CODING Snoo	TF binding site mE1_TFBS_sens
3R	15084653	3R_15084653_SNP [dm3] 3R_19258931_SNP [dm6]	G	C	3.265e^-4	0.856	SYNONYMOUS_CODING CG14280	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	4012117	3L_4012117_SNP [dm3] 3L_4012117_SNP [dm6]	C	T	3.272e^-4	0.856	INTERGENIC
2L	9035277	2L_9035277_SNP [dm3] 2L_9035277_SNP [dm6]	G	T	3.274e^-4	0.856	INTERGENIC
3R	18101284	3R_18101284_SNP [dm3] 3R_22275562_SNP [dm6]	T	G	3.277e^-4	0.856	INTRON SKIP	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	14983671	2L_14983671_INS [dm3] 2L_14983671_INS [dm6]	T	TAATTTATTTTTTTA...	3.286e^-4	0.856	INTRON mol
2L	14998052	2L_14998052_SNP [dm3] 2L_14998052_SNP [dm6]	A	C	3.288e^-4	0.856	UPSTREAM mol INTERGENIC
3L	12306067	3L_12306067_SNP [dm3] 3L_12312967_SNP [dm6]	G	T	3.291e^-4	0.856	INTERGENIC
X	21269231	X_21269231_SNP [dm3] X_21398204_SNP [dm6]	A	C	3.293e^-4	0.856	UPSTREAM lcs INTERGENIC
3L	8602933	3L_8602933_SNP [dm3] 3L_8609833_SNP [dm6]	T	C	3.293e^-4	0.856	UTR_5_PRIME CG6282	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	19505497	X_19505497_SNP [dm3] X_19611464_SNP [dm6]	A	G	3.301e^-4	0.856	UPSTREAM Tyler & 1 other DOWNSTREAM CG14207 INTERGENIC	TF binding site mE1_TFBS_cad
2L	17962009	2L_17962009_SNP [dm3] 2L_17962009_SNP [dm6]	T	G	3.303e^-4	0.856	DOWNSTREAM btv INTERGENIC
3R	11022815	3R_11022815_SNP [dm3] 3R_15197093_SNP [dm6]	G	A	3.307e^-4	0.856	UTR_5_PRIME CG42542 UPSTREAM CG6752 INTRON CG42542	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Ubx
2L	12515781	2L_12515781_SNP [dm3] 2L_12515781_SNP [dm6]	A	C	3.308e^-4	0.856	INTRON bun
2R	11391523	2R_11391523_SNP [dm3] 2R_15504018_SNP [dm6]	G	T	3.309e^-4	0.856	UPSTREAM Ir52c DOWNSTREAM Ir52b INTERGENIC
3L	4012099	3L_4012099_SNP [dm3] 3L_4012099_SNP [dm6]	G	C	3.322e^-4	0.856	INTERGENIC
2R	1001179	2R_1001179_SNP [dm3] 2R_5113674_SNP [dm6]	A	C	3.324e^-4	0.856	INTERGENIC
X	22067684	X_22067684_DEL [dm3] X_22665848_DEL [dm6]	TAGGAGCCAAGAGTCACTTT...	T	3.324e^-4	0.856	INTRON CR44997
3L	2288881	3L_2288881_SNP [dm3] 3L_2288881_SNP [dm6]	T	C	3.324e^-4	0.856	INTRON MsR2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	11693082	2R_11693082_SNP [dm3] 2R_15805577_SNP [dm6]	G	A	3.328e^-4	0.856	INTRON tun & 1 other
2L	3395107	2L_3395107_SNP [dm3] 2L_3395107_SNP [dm6]	C	T	3.331e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_inv
2L	7892212	2L_7892212_SNP [dm3] 2L_7892212_SNP [dm6]	A	G	3.352e^-4	0.856	UTR_3_PRIME Snoo DOWNSTREAM Snoo
3R	4459651	3R_4459651_SNP [dm3] 3R_8633929_SNP [dm6]	A	C	3.355e^-4	0.856	DOWNSTREAM Or85e INTERGENIC
2L	11730074	2L_11730074_SNP [dm3] 2L_11730074_SNP [dm6]	T	C	3.356e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_inv
2R	11737189	2R_11737189_SNP [dm3] 2R_15849684_SNP [dm6]	T	G	3.358e^-4	0.856	SPLICE_SITE_REGION tun INTRON tun
2R	11998659	2R_11998659_SNP [dm3] 2R_16111154_SNP [dm6]	T	C	3.360e^-4	0.856	INTRON Asph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9081403	2R_9081403_SNP [dm3] 2R_13193898_SNP [dm6]	C	T	3.361e^-4	0.856	INTRON Kdm4B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	4365169	2L_4365169_SNP [dm3] 2L_4365169_SNP [dm6]	G	C	3.367e^-4	0.856	UPSTREAM CR45363 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2L	3280581	2L_3280581_SNP [dm3] 2L_3280581_SNP [dm6]	C	T	3.367e^-4	0.856	UPSTREAM CG3332 INTERGENIC
2R	1001566	2R_1001566_SNP [dm3] 2R_5114061_SNP [dm6]	T	C	3.370e^-4	0.856	INTERGENIC	transposable element FlyBase
2L	20546239	2L_20546239_SNP [dm3] 2L_20546239_SNP [dm6]	A	G	3.371e^-4	0.856	INTERGENIC
2L	9033156	2L_9033156_DEL [dm3] 2L_9033156_DEL [dm6]	TC	T	3.383e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	988685	2R_988685_SNP [dm3] 2R_5101180_SNP [dm6]	A	T	3.384e^-4	0.856	INTERGENIC	transposable element FlyBase
2R	2608520	2R_2608520_SNP [dm3] 2R_6721015_SNP [dm6]	G	A	3.393e^-4	0.856	DOWNSTREAM l_2_01289 INTERGENIC
2R	2716614	2R_2716614_SNP [dm3] 2R_6829109_SNP [dm6]	G	A	3.394e^-4	0.856	INTRON CG15236	TF binding site mE1_TFBS_chinmo
2L	19219511	2L_19219511_SNP [dm3] 2L_19219511_SNP [dm6]	T	G	3.394e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2R	996342	2R_996342_SNP [dm3] 2R_5108837_SNP [dm6]	A	T	3.395e^-4	0.856	INTERGENIC
2L	8791523	2L_8791523_SNP [dm3] 2L_8791523_SNP [dm6]	G	A	3.397e^-4	0.856	INTERGENIC
3R	14551418	3R_14551418_SNP [dm3] 3R_18725696_SNP [dm6]	G	T	3.400e^-4	0.856	NON_SYNONYMOUS_CODING CG7714 INTRON Cha	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1032475	2R_1032475_MNP [dm3] 2R_5144970_MNP [dm6]	GCTG	AAAT	3.413e^-4	0.856	INTRON Atf6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14085575	2R_14085575_SNP [dm3] 2R_18198070_SNP [dm6]	T	A	3.420e^-4	0.856	INTERGENIC
2L	19225545	2L_19225545_SNP [dm3] 2L_19225545_SNP [dm6]	T	A	3.420e^-4	0.856	INTERGENIC
3L	2529215	3L_2529215_SNP [dm3] 3L_2529215_SNP [dm6]	G	A	3.429e^-4	0.856	INTRON Spn	TF binding site mE1_TFBS_HSA
3R	23642762	3R_23642762_SNP [dm3] 3R_27817040_SNP [dm6]	A	G	3.430e^-4	0.856	INTRON CG34353
X	6284090	X_6284090_SNP [dm3] X_6390057_SNP [dm6]	C	A	3.431e^-4	0.856	INTERGENIC
3L	2522576	3L_2522576_INS [dm3] 3L_2522576_INS [dm6]	C	CAG	3.434e^-4	0.856	INTRON Spn
2L	5256032	2L_5256032_DEL [dm3] 2L_5256032_DEL [dm6]	TGTTTAAT	T	3.439e^-4	0.856	INTRON tkv	TF binding site mE1_TFBS_cad
3L	2374212	3L_2374212_SNP [dm3] 3L_2374212_SNP [dm6]	G	A	3.460e^-4	0.856	SYNONYMOUS_CODING CG9004 UPSTREAM mRpL23	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	994942	2R_994942_SNP [dm3] 2R_5107437_SNP [dm6]	G	T	3.467e^-4	0.856	INTERGENIC	transposable element FlyBase
3R	20403687	3R_20403687_SNP [dm3] 3R_24577965_SNP [dm6]	C	A	3.470e^-4	0.856	UPSTREAM CG13624 INTRON CG13624
2R	10872630	2R_10872630_SNP [dm3] 2R_14985125_SNP [dm6]	A	T	3.470e^-4	0.856	UPSTREAM tRNA:CR30241 INTRON pcs
3L	1095657	3L_1095657_SNP [dm3] 3L_1095657_SNP [dm6]	G	C	3.472e^-4	0.856	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	17015478	3L_17015478_SNP [dm3] 3L_17022378_SNP [dm6]	C	T	3.483e^-4	0.856	SYNONYMOUS_CODING CG6652 DOWNSTREAM a10	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5052401	X_5052401_SNP [dm3] X_5158368_SNP [dm6]	A	T	3.487e^-4	0.856	INTRON rg & 1 other
X	12424758	X_12424758_DEL [dm3] X_12530725_DEL [dm6]	TGG	T	3.492e^-4	0.856	INTRON CG43921
2R	11341764	2R_11341764_SNP [dm3] 2R_15454259_SNP [dm6]	G	A	3.498e^-4	0.856	INTRON CG43729
2L	9396919	2L_9396919_SNP [dm3] 2L_9396919_SNP [dm6]	C	A	3.500e^-4	0.856	DOWNSTREAM CG4438 INTRON Shawl
3L	18086591	3L_18086591_SNP [dm3] 3L_18093491_SNP [dm6]	A	G	3.508e^-4	0.856	INTRON CG13698
3R	5502526	3R_5502526_SNP [dm3] 3R_9676804_SNP [dm6]	G	A	3.512e^-4	0.856	SYNONYMOUS_CODING CG8358	TF binding site mE1_TFBS_sens
2L	3773677	2L_3773677_SNP [dm3] 2L_3773677_SNP [dm6]	C	G	3.515e^-4	0.856	INTRON bowl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	16369807	3R_16369807_SNP [dm3] 3R_20544085_SNP [dm6]	T	A	3.522e^-4	0.856	INTRON Stat92E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9081410	2R_9081410_SNP [dm3] 2R_13193905_SNP [dm6]	G	A	3.523e^-4	0.856	INTRON Kdm4B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11076975	3L_11076975_SNP [dm3] 3L_11083875_SNP [dm6]	T	G	3.535e^-4	0.856	INTRON JIL-1	TF binding site BDTNP1_TFBS_dl
2R	14670585	2R_14670585_DEL [dm3] 2R_18783080_DEL [dm6]	CA	C	3.536e^-4	0.856	UPSTREAM CG15080 INTERGENIC
2L	11073602	2L_11073602_SNP [dm3] 2L_11073602_SNP [dm6]	T	C	3.547e^-4	0.856	DOWNSTREAM CR45725 INTERGENIC
2R	1022401	2R_1022401_SNP [dm3] 2R_5134896_SNP [dm6]	G	A	3.548e^-4	0.856	INTERGENIC	transposable element FlyBase
3L	2868383	3L_2868383_SNP [dm3] 3L_2868383_SNP [dm6]	A	C	3.553e^-4	0.856	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	17585428	3L_17585428_SNP [dm3] 3L_17592328_SNP [dm6]	A	G	3.571e^-4	0.856	INTRON Eip74EF
2R	11683405	2R_11683405_SNP [dm3] 2R_15795900_SNP [dm6]	C	T	3.572e^-4	0.856	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24724330	3R_24724330_SNP [dm3] 3R_28898608_SNP [dm6]	C	A	3.573e^-4	0.856	INTRON Doa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15933188	3L_15933188_SNP [dm3] 3L_15940088_SNP [dm6]	A	G	3.580e^-4	0.856	INTRON Pka-C3
3R	1331531	3R_1331531_INS [dm3] 3R_5505809_INS [dm6]	A	ATGCCTTATTCAGAAATACC...	3.597e^-4	0.856	INTERGENIC
3L	10638691	3L_10638691_SNP [dm3] 3L_10645591_SNP [dm6]	A	T	3.601e^-4	0.856	DOWNSTREAM CG14153 INTRON CG32066
2L	2562471	2L_2562471_SNP [dm3] 2L_2562471_SNP [dm6]	C	T	3.605e^-4	0.856	DOWNSTREAM Cyp309a1 INTERGENIC
2L	14415764	2L_14415764_SNP [dm3] 2L_14415764_SNP [dm6]	G	A	3.615e^-4	0.856	DOWNSTREAM Pburs INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	12493726	2R_12493726_SNP [dm3] 2R_16606221_SNP [dm6]	A	C	3.616e^-4	0.856	INTERGENIC
2R	16611177	2R_16611177_SNP [dm3] 2R_20723672_SNP [dm6]	G	A	3.624e^-4	0.856	DOWNSTREAM CR44660 INTRON dpr
X	20472553	X_20472553_SNP [dm3] X_20601526_SNP [dm6]	A	G	3.629e^-4	0.856	INTRON RunxA
2R	9927276	2R_9927276_SNP [dm3] 2R_14039771_SNP [dm6]	T	C	3.631e^-4	0.856	SYNONYMOUS_CODING mam	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8068225	3L_8068225_SNP [dm3] 3L_8075125_SNP [dm6]	C	T	3.632e^-4	0.856	INTRON Ect4
3R	22819736	3R_22819736_SNP [dm3] 3R_26994014_SNP [dm6]	A	T	3.644e^-4	0.856	UPSTREAM TwdlC INTERGENIC
3R	11462967	3R_11462967_SNP [dm3] 3R_15637245_SNP [dm6]	T	C	3.645e^-4	0.856	SYNONYMOUS_CODING CG43336 DOWNSTREAM CG43335
2L	294234	2L_294234_SNP [dm3] 2L_294234_SNP [dm6]	G	A	3.646e^-4	0.856	SYNONYMOUS_CODING U2af38 UPSTREAM Hop	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	19445017	2R_19445017_SNP [dm3] 2R_23557494_SNP [dm6]	C	A	3.648e^-4	0.856	NON_SYNONYMOUS_CODING ItgalphaPS5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	14930172	2L_14930172_SNP [dm3] 2L_14930172_SNP [dm6]	G	A	3.649e^-4	0.856	SYNONYMOUS_CODING CG3491 INTRON CG42313
3L	832920	3L_832920_SNP [dm3] 3L_832920_SNP [dm6]	G	T	3.653e^-4	0.856	SYNONYMOUS_CODING CG13900 UPSTREAM snoRNA:Psi18S-110 & 1 other DOWNSTREAM snoRNA:Psi18S-1086	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2L	5885739	2L_5885739_SNP [dm3] 2L_5885739_SNP [dm6]	T	A	3.654e^-4	0.856	UPSTREAM Sfp26Ac & 1 other DOWNSTREAM CG43185 INTERGENIC
2L	9618580	2L_9618580_SNP [dm3] 2L_9618580_SNP [dm6]	A	G	3.662e^-4	0.856	INTRON GlcAT-S
2L	14993174	2L_14993174_SNP [dm3] 2L_14993174_SNP [dm6]	A	C	3.666e^-4	0.856	INTRON mol
2R	8992272	2R_8992272_SNP [dm3] 2R_13104767_SNP [dm6]	C	T	3.668e^-4	0.856	SYNONYMOUS_CODING CG44341
X	10008268	X_10008268_SNP [dm3] X_10114235_SNP [dm6]	C	A	3.671e^-4	0.856	DOWNSTREAM CR44894 INTRON RhoU	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14229539	2L_14229539_SNP [dm3] 2L_14229539_SNP [dm6]	G	A	3.684e^-4	0.856	SPLICE_SITE_REGION Dyrk2 INTRON Dyrk2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9014606	2L_9014606_SNP [dm3] 2L_9014606_SNP [dm6]	T	C	3.686e^-4	0.856	UPSTREAM Rcd-1r DOWNSTREAM CG13102 INTERGENIC
3L	10820658	3L_10820658_SNP [dm3] 3L_10827558_SNP [dm6]	A	T	3.686e^-4	0.856	INTERGENIC
2L	9035256	2L_9035256_SNP [dm3] 2L_9035256_SNP [dm6]	A	G	3.688e^-4	0.856	INTERGENIC
2L	7887974	2L_7887974_SNP [dm3] 2L_7887974_SNP [dm6]	G	T	3.691e^-4	0.856	UPSTREAM CG7102 INTRON Spn28Da	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	4351439	3L_4351439_SNP [dm3] 3L_4351439_SNP [dm6]	G	T	3.701e^-4	0.856	INTRON Cip4
2L	20084242	2L_20084242_SNP [dm3] 2L_20084242_SNP [dm6]	A	C	3.704e^-4	0.856	INTRON neb & 1 other	TF binding site BDTNP1_TFBS_dl
3L	5344684	3L_5344684_SNP [dm3] 3L_5351584_SNP [dm6]	C	G	3.710e^-4	0.856	UPSTREAM lama INTRON lama
2R	1068442	2R_1068442_SNP [dm3] 2R_5180937_SNP [dm6]	C	T	3.717e^-4	0.856	SYNONYMOUS_CODING Nipped-A
2L	9261249	2L_9261249_SNP [dm3] 2L_9261249_SNP [dm6]	A	G	3.718e^-4	0.856	DOWNSTREAM CR45262 INTRON Ggamma30A
3R	1524660	3R_1524660_SNP [dm3] 3R_5698938_SNP [dm6]	C	G	3.729e^-4	0.856	INTRON plx
2R	1031710	2R_1031710_SNP [dm3] 2R_5144205_SNP [dm6]	A	T	3.737e^-4	0.856	UPSTREAM Atf6 INTERGENIC	transposable element FlyBase
2R	13055838	2R_13055838_SNP [dm3] 2R_17168333_SNP [dm6]	C	T	3.742e^-4	0.856	INTERGENIC
X	2831578	X_2831578_SNP [dm3] X_2937545_SNP [dm6]	G	A	3.744e^-4	0.856	NON_SYNONYMOUS_CODING CG3598 INTRON kirre	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12377159	3L_12377159_SNP [dm3] 3L_12384059_SNP [dm6]	A	C	3.749e^-4	0.856	INTRON Ncc69
3L	772028	3L_772028_SNP [dm3] 3L_772028_SNP [dm6]	G	T	3.753e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14707269	3R_14707269_SNP [dm3] 3R_18881547_SNP [dm6]	C	T	3.765e^-4	0.856	INTERGENIC
2L	3229384	2L_3229384_SNP [dm3] 2L_3229384_SNP [dm6]	G	C	3.767e^-4	0.856	INTERGENIC
3L	14213910	3L_14213910_SNP [dm3] 3L_14220810_SNP [dm6]	T	G	3.771e^-4	0.856	UPSTREAM nuf INTRON nuf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	21963433	3L_21963433_SNP [dm3] 3L_21970333_SNP [dm6]	A	G	3.771e^-4	0.856	DOWNSTREAM CS-2 INTERGENIC
2R	998294	2R_998294_SNP [dm3] 2R_5110789_SNP [dm6]	A	T	3.773e^-4	0.856	INTERGENIC
2L	11939433	2L_11939433_SNP [dm3] 2L_11939433_SNP [dm6]	C	T	3.781e^-4	0.856	DOWNSTREAM Or33c INTERGENIC
2L	9261227	2L_9261227_SNP [dm3] 2L_9261227_SNP [dm6]	T	C	3.787e^-4	0.856	DOWNSTREAM CR45262 INTRON Ggamma30A
2L	16183859	2L_16183859_DEL [dm3] 2L_16183859_DEL [dm6]	TT	T	3.788e^-4	0.856	INTRON Ca-alpha1D
X	12601401	X_12601401_SNP [dm3] X_12707368_SNP [dm6]	A	G	3.801e^-4	0.856	NON_SYNONYMOUS_CODING CG15725 INTRON Smr	TF binding site BDTNP1_TFBS_dl
3R	17937066	3R_17937066_SNP [dm3] 3R_22111344_SNP [dm6]	A	G	3.807e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	11164096	2R_11164096_SNP [dm3] 2R_15276591_SNP [dm6]	A	T	3.813e^-4	0.856	INTRON Trpm
2R	19413585	2R_19413585_SNP [dm3] 2R_23526062_SNP [dm6]	C	A	3.825e^-4	0.856	INTRON mi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	25777431	3R_25777431_SNP [dm3] 3R_29951709_SNP [dm6]	A	T	3.834e^-4	0.856	INTRON TkR99D	TF binding site mE1_TFBS_chinmo
2R	15718630	2R_15718630_SNP [dm3] 2R_19831125_SNP [dm6]	A	G	3.838e^-4	0.856	SYNONYMOUS_CODING Toll-7	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	4354852	3L_4354852_SNP [dm3] 3L_4354852_SNP [dm6]	C	T	3.841e^-4	0.856	INTRON Cip4
3R	13045121	3R_13045121_SNP [dm3] 3R_17219399_SNP [dm6]	A	C	3.843e^-4	0.856	NON_SYNONYMOUS_CODING CG31262
3L	17367555	3L_17367555_SNP [dm3] 3L_17374455_SNP [dm6]	C	T	3.844e^-4	0.856	INTRON Cad74A
2R	2721010	2R_2721010_SNP [dm3] 2R_6833505_SNP [dm6]	A	G	3.852e^-4	0.856	INTRON CG15236	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14569275	2L_14569275_SNP [dm3] 2L_14569275_SNP [dm6]	A	G	3.853e^-4	0.856	INTERGENIC
2L	14077319	2L_14077319_SNP [dm3] 2L_14077319_SNP [dm6]	A	T	3.858e^-4	0.856	INTRON nAChRalpha5
X	16019718	X_16019718_SNP [dm3] X_16125685_SNP [dm6]	A	T	3.862e^-4	0.856	INTRON disco-r
3R	24495252	3R_24495252_SNP [dm3] 3R_28669530_SNP [dm6]	C	T	3.867e^-4	0.856	SYNONYMOUS_CODING CG33346
3L	13640255	3L_13640255_SNP [dm3] 3L_13647155_SNP [dm6]	C	T	3.870e^-4	0.856	INTRON bru-3
X	19505483	X_19505483_SNP [dm3] X_19611450_SNP [dm6]	C	G	3.872e^-4	0.856	UPSTREAM Tyler & 1 other DOWNSTREAM CG14207 INTERGENIC
3L	834109	3L_834109_SNP [dm3] 3L_834109_SNP [dm6]	T	C	3.884e^-4	0.856	UTR_5_PRIME CG42553 UPSTREAM snoRNA:Psi18S-1086 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2L	18333734	2L_18333734_SNP [dm3] 2L_18333734_SNP [dm6]	T	G	3.888e^-4	0.856	INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
2L	19857392	2L_19857392_SNP [dm3] 2L_19857392_SNP [dm6]	G	A	3.892e^-4	0.856	INTRON sick
2L	2725333	2L_2725333_SNP [dm3] 2L_2725333_SNP [dm6]	A	G	3.893e^-4	0.856	UPSTREAM CG31689 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	17025363	3L_17025363_SNP [dm3] 3L_17032263_SNP [dm6]	A	G	3.893e^-4	0.856	UPSTREAM Ilp8 DOWNSTREAM CR43250 EXON CR45756	TF binding site mE1_TFBS_Trl
3L	18809463	3L_18809463_SNP [dm3] 3L_18816363_SNP [dm6]	C	T	3.904e^-4	0.856	INTRON CG14073
3R	14051952	3R_14051952_SNP [dm3] 3R_18226230_SNP [dm6]	C	A	3.905e^-4	0.856	UPSTREAM Mdh2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	7474290	2R_7474290_SNP [dm3] 2R_11586785_SNP [dm6]	G	T	3.910e^-4	0.856	SYNONYMOUS_CODING tou	TF binding site mE1_TFBS_sens
2L	14998151	2L_14998151_SNP [dm3] 2L_14998151_SNP [dm6]	A	T	3.914e^-4	0.856	UPSTREAM mol INTERGENIC
X	17432192	X_17432192_SNP [dm3] X_17538159_SNP [dm6]	A	C	3.914e^-4	0.856	INTRON CG43658
X	22065492	X_22065492_SNP [dm3] X_22663656_SNP [dm6]	T	C	3.924e^-4	0.856	INTRON CR44997
2R	8846940	2R_8846940_SNP [dm3] 2R_12959435_SNP [dm6]	T	G	3.925e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3R	10275840	3R_10275840_SNP [dm3] 3R_14450118_SNP [dm6]	T	C	3.929e^-4	0.856	INTRON cv-c
2L	19286479	2L_19286479_SNP [dm3] 2L_19286479_SNP [dm6]	A	G	3.933e^-4	0.856	INTERGENIC
3R	23792302	3R_23792302_SNP [dm3] 3R_27966580_SNP [dm6]	A	G	3.935e^-4	0.856	SYNONYMOUS_CODING CG4849 DOWNSTREAM betaTub97EF	TF binding site mE1_TFBS_cad
3R	14028538	3R_14028538_SNP [dm3] 3R_18202816_SNP [dm6]	G	A	3.944e^-4	0.856	INTRON CG7985
3L	1399091	3L_1399091_SNP [dm3] 3L_1399091_SNP [dm6]	T	C	3.945e^-4	0.856	DOWNSTREAM tRNA:E4:62Ac & 1 other INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_sens
X	13684021	X_13684021_SNP [dm3] X_13789988_SNP [dm6]	A	C	3.952e^-4	0.856	DOWNSTREAM CG10993 INTRON inaE
X	12731548	X_12731548_SNP [dm3] X_12837515_SNP [dm6]	A	T	3.952e^-4	0.856	INTRON Pde9	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7975684	2L_7975684_SNP [dm3] 2L_7975684_SNP [dm6]	A	G	3.958e^-4	0.856	SYNONYMOUS_CODING Snoo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7101023	2L_7101023_SNP [dm3] 2L_7101023_SNP [dm6]	A	G	3.958e^-4	0.856	INTRON Pvf3
2R	991200	2R_991200_SNP [dm3] 2R_5103695_SNP [dm6]	C	T	3.964e^-4	0.856	INTERGENIC	transposable element FlyBase
2L	17428453	2L_17428453_SNP [dm3] 2L_17428453_SNP [dm6]	G	A	3.971e^-4	0.856	UPSTREAM Dif INTRON Dif
3L	12474238	3L_12474238_SNP [dm3] 3L_12481138_SNP [dm6]	A	G	3.986e^-4	0.856	INTRON CG10663
3L	15321669	3L_15321669_SNP [dm3] 3L_15328569_SNP [dm6]	C	T	3.988e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_Trl
X	7699120	X_7699120_SNP [dm3] X_7805087_SNP [dm6]	T	A	3.995e^-4	0.856	INTERGENIC
3R	22663867	3R_22663867_SNP [dm3] 3R_26838145_SNP [dm6]	T	C	4.002e^-4	0.856	SYNONYMOUS_CODING Tl
3L	16726688	3L_16726688_SNP [dm3] 3L_16733588_SNP [dm6]	A	T	4.004e^-4	0.856	UTR_5_PRIME CG9701
2R	11166732	2R_11166732_SNP [dm3] 2R_15279227_SNP [dm6]	T	A	4.007e^-4	0.856	INTRON Trpm
2L	18736326	2L_18736326_SNP [dm3] 2L_18736326_SNP [dm6]	A	T	4.022e^-4	0.856	DOWNSTREAM CR44769 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5973155	3L_5973155_SNP [dm3] 3L_5980055_SNP [dm6]	A	G	4.037e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3484859	3L_3484859_DEL [dm3] 3L_3484859_DEL [dm6]	TAT	T	4.040e^-4	0.856	UPSTREAM CG43074 & 1 other INTRON CG42324
2L	11939409	2L_11939409_SNP [dm3] 2L_11939409_SNP [dm6]	A	G	4.051e^-4	0.856	DOWNSTREAM Or33c INTERGENIC
2L	9446947	2L_9446947_SNP [dm3] 2L_9446947_SNP [dm6]	C	T	4.064e^-4	0.856	INTRON numb	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2R	992625	2R_992625_SNP [dm3] 2R_5105120_SNP [dm6]	C	T	4.065e^-4	0.856	INTERGENIC	transposable element FlyBase
3L	16759510	3L_16759510_SNP [dm3] 3L_16766410_SNP [dm6]	G	C	4.069e^-4	0.856	UTR_5_PRIME Nrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14565548	2L_14565548_SNP [dm3] 2L_14565548_SNP [dm6]	T	A	4.075e^-4	0.856	INTERGENIC
3L	15662193	3L_15662193_SNP [dm3] 3L_15669093_SNP [dm6]	A	G	4.077e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	12404884	X_12404884_SNP [dm3] X_12510851_SNP [dm6]	A	C	4.080e^-4	0.856	INTRON CG2556
3R	10984369	3R_10984369_SNP [dm3] 3R_15158647_SNP [dm6]	G	A	4.084e^-4	0.856	INTRON Gyc88E
2R	15718627	2R_15718627_SNP [dm3] 2R_19831122_SNP [dm6]	T	C	4.084e^-4	0.856	SYNONYMOUS_CODING Toll-7	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	3749937	2L_3749937_SNP [dm3] 2L_3749937_SNP [dm6]	G	A	4.095e^-4	0.856	INTRON CG10019
3L	11076973	3L_11076973_INS [dm3] 3L_11083873_INS [dm6]	A	AA	4.095e^-4	0.856	INTRON JIL-1	TF binding site BDTNP1_TFBS_dl
2L	14250962	2L_14250962_SNP [dm3] 2L_14250962_SNP [dm6]	A	C	4.100e^-4	0.856	INTERGENIC
2L	9639735	2L_9639735_SNP [dm3] 2L_9639735_SNP [dm6]	A	C	4.101e^-4	0.856	INTRON Apoltp
2R	17611680	2R_17611680_SNP [dm3] 2R_21724175_SNP [dm6]	T	C	4.111e^-4	0.856	DOWNSTREAM LBR INTERGENIC
X	18531201	X_18531201_SNP [dm3] X_18637168_SNP [dm6]	C	T	4.112e^-4	0.856	INTRON Rip11
3L	13956017	3L_13956017_SNP [dm3] 3L_13962917_SNP [dm6]	G	A	4.117e^-4	0.856	SYNONYMOUS_CODING Meics DOWNSTREAM CG32137
2L	6197508	2L_6197508_SNP [dm3] 2L_6197508_SNP [dm6]	T	C	4.130e^-4	0.856	INTRON CG34380	TF binding site BDTNP1_TFBS_da
3L	18438836	3L_18438836_SNP [dm3] 3L_18445736_SNP [dm6]	T	A	4.138e^-4	0.856	INTERGENIC
3L	2299578	3L_2299578_SNP [dm3] 3L_2299578_SNP [dm6]	A	G	4.141e^-4	0.856	INTRON MsR2
3L	14636422	3L_14636422_SNP [dm3] 3L_14643322_SNP [dm6]	A	G	4.147e^-4	0.856	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	11939434	2L_11939434_SNP [dm3] 2L_11939434_SNP [dm6]	A	G	4.149e^-4	0.856	DOWNSTREAM Or33c INTERGENIC
2L	5535035	2L_5535035_SNP [dm3] 2L_5535035_SNP [dm6]	A	G	4.153e^-4	0.856	DOWNSTREAM tomb INTRON Cap-D3
3R	23967111	3R_23967111_SNP [dm3] 3R_28141389_SNP [dm6]	T	C	4.157e^-4	0.856	INTERGENIC
2L	2689850	2L_2689850_SNP [dm3] 2L_2689850_SNP [dm6]	A	G	4.164e^-4	0.856	INTRON CG31690
2R	19443878	2R_19443878_SNP [dm3] 2R_23556355_SNP [dm6]	G	A	4.165e^-4	0.856	UPSTREAM ItgalphaPS5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13045083	3R_13045083_SNP [dm3] 3R_17219361_SNP [dm6]	C	T	4.174e^-4	0.856	SYNONYMOUS_CODING CG31262
3R	10980925	3R_10980925_SNP [dm3] 3R_15155203_SNP [dm6]	C	T	4.176e^-4	0.856	INTRON Gyc88E
2L	19233466	2L_19233466_SNP [dm3] 2L_19233466_SNP [dm6]	A	T	4.179e^-4	0.856	INTERGENIC
2L	3749946	2L_3749946_SNP [dm3] 2L_3749946_SNP [dm6]	C	T	4.183e^-4	0.856	INTRON CG10019
3L	2528811	3L_2528811_SNP [dm3] 3L_2528811_SNP [dm6]	T	C	4.188e^-4	0.856	INTRON Spn
3R	22144573	3R_22144573_SNP [dm3] 3R_26318851_SNP [dm6]	A	T	4.193e^-4	0.856	UTR_5_PRIME CG33970
2L	10171629	2L_10171629_SNP [dm3] 2L_10171629_SNP [dm6]	G	A	4.193e^-4	0.856	INTRON CG44153
3R	19340661	3R_19340661_SNP [dm3] 3R_23514939_SNP [dm6]	C	A	4.200e^-4	0.856	NON_SYNONYMOUS_CODING Irk2	TF binding site mE1_TFBS_sens
2L	9374999	2L_9374999_SNP [dm3] 2L_9374999_SNP [dm6]	C	T	4.206e^-4	0.856	DOWNSTREAM CR43865 INTRON Shawl
2L	2056605	2L_2056605_SNP [dm3] 2L_2056605_SNP [dm6]	C	G	4.214e^-4	0.856	INTRON Or22c
X	8262461	X_8262461_SNP [dm3] X_8368428_SNP [dm6]	C	G	4.215e^-4	0.856	INTERGENIC
2L	7927182	2L_7927182_SNP [dm3] 2L_7927182_SNP [dm6]	A	T	4.218e^-4	0.856	INTRON Snoo
3L	10189553	3L_10189553_SNP [dm3] 3L_10196453_SNP [dm6]	G	A	4.229e^-4	0.856	INTRON ect	TF binding site mE1_TFBS_chinmo
2L	10928273	2L_10928273_INS [dm3] 2L_10928273_INS [dm6]	A	ATATATTAACGGTT...	4.231e^-4	0.856	INTRON dpr2
2L	14916876	2L_14916876_SNP [dm3] 2L_14916876_SNP [dm6]	C	T	4.234e^-4	0.856	INTRON CG42313
X	3320827	X_3320827_SNP [dm3] X_3426794_SNP [dm6]	A	T	4.235e^-4	0.856	DOWNSTREAM tRNA:CR32493 INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	6108631	2L_6108631_SNP [dm3] 2L_6108631_SNP [dm6]	G	T	4.240e^-4	0.856	INTRON stai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	14028542	3R_14028542_SNP [dm3] 3R_18202820_SNP [dm6]	G	C	4.243e^-4	0.856	INTRON CG7985
X	8776699	X_8776699_INS [dm3] X_8882666_INS [dm6]	C	CAAAC	4.246e^-4	0.856	INTRON Moe
X	2686824	X_2686824_DEL [dm3] X_2792791_DEL [dm6]	AA	A	4.252e^-4	0.856	INTRON kirre & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1440162	2L_1440162_SNP [dm3] 2L_1440162_SNP [dm6]	T	G	4.254e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	1032463	2R_1032463_DEL [dm3] 2R_5144958_DEL [dm6]	GT	G	4.255e^-4	0.856	INTRON Atf6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10092872	3R_10092872_SNP [dm3] 3R_14267150_SNP [dm6]	T	C	4.256e^-4	0.856	SYNONYMOUS_CODING trx	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9820352	3R_9820352_SNP [dm3] 3R_13994630_SNP [dm6]	T	C	4.258e^-4	0.856	INTRON rdx
2L	14565549	2L_14565549_SNP [dm3] 2L_14565549_SNP [dm6]	A	G	4.261e^-4	0.856	INTERGENIC
X	8515992	X_8515992_SNP [dm3] X_8621959_SNP [dm6]	G	A	4.265e^-4	0.856	INTERGENIC
2R	10884207	2R_10884207_SNP [dm3] 2R_14996702_SNP [dm6]	G	A	4.271e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_inv
2R	13056976	2R_13056976_SNP [dm3] 2R_17169471_SNP [dm6]	A	T	4.277e^-4	0.856	INTERGENIC
2R	10691532	2R_10691532_SNP [dm3] 2R_14804027_SNP [dm6]	A	G	4.279e^-4	0.856	INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15462908	3L_15462908_SNP [dm3] 3L_15469808_SNP [dm6]	G	C	4.283e^-4	0.856	INTERGENIC
2R	19308751	2R_19308751_SNP [dm3] 2R_23421228_SNP [dm6]	A	C	4.287e^-4	0.856	DOWNSTREAM CG9815 INTERGENIC
2L	11428399	2L_11428399_MNP [dm3] 2L_11428399_MNP [dm6]	CGT	TAG	4.288e^-4	0.856	INTERGENIC
2R	1032480	2R_1032480_SNP [dm3] 2R_5144975_SNP [dm6]	C	G	4.289e^-4	0.856	INTRON Atf6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14998061	2L_14998061_SNP [dm3] 2L_14998061_SNP [dm6]	G	T	4.291e^-4	0.856	UPSTREAM mol INTERGENIC
2L	14250283	2L_14250283_SNP [dm3] 2L_14250283_SNP [dm6]	G	A	4.293e^-4	0.856	INTERGENIC
X	5198881	X_5198881_SNP [dm3] X_5304848_SNP [dm6]	T	G	4.296e^-4	0.856	SYNONYMOUS_CODING CG3323 INTRON CG42749
2L	9075133	2L_9075133_SNP [dm3] 2L_9075133_SNP [dm6]	C	T	4.296e^-4	0.856	INTERGENIC
3R	25547228	3R_25547228_SNP [dm3] 3R_29721506_SNP [dm6]	C	T	4.301e^-4	0.856	INTRON CG15506	TF binding site mE1_TFBS_chinmo
3L	18002488	3L_18002488_INS [dm3] 3L_18009388_INS [dm6]	T	TTGCCA	4.305e^-4	0.856	INTRON Eip75B
3R	11090280	3R_11090280_SNP [dm3] 3R_15264558_SNP [dm6]	G	A	4.305e^-4	0.856	INTRON Set	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2R	19300165	2R_19300165_SNP [dm3] 2R_23412642_SNP [dm6]	T	C	4.307e^-4	0.856	UTR_3_PRIME CG9812
2R	19300168	2R_19300168_SNP [dm3] 2R_23412645_SNP [dm6]	A	G	4.307e^-4	0.856	UTR_3_PRIME CG9812
3R	9987097	3R_9987097_SNP [dm3] 3R_14161375_SNP [dm6]	C	A	4.317e^-4	0.856	INTERGENIC
2R	7074659	2R_7074659_SNP [dm3] 2R_11187154_SNP [dm6]	A	T	4.319e^-4	0.856	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2221533	3L_2221533_SNP [dm3] 3L_2221533_SNP [dm6]	G	C	4.319e^-4	0.856	INTERGENIC
2L	2936791	2L_2936791_SNP [dm3] 2L_2936791_SNP [dm6]	C	A	4.331e^-4	0.856	INTRON lilli	TF binding site BDTNP1_TFBS_dl
2L	9028253	2L_9028253_SNP [dm3] 2L_9028253_SNP [dm6]	G	T	4.338e^-4	0.856	INTRON CG9582 & 1 other
2R	1032489	2R_1032489_SNP [dm3] 2R_5144984_SNP [dm6]	T	A	4.340e^-4	0.856	INTRON Atf6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20854350	2L_20854350_SNP [dm3] 2L_20854350_SNP [dm6]	T	C	4.341e^-4	0.856	INTRON twit
2R	13537180	2R_13537180_SNP [dm3] 2R_17649675_SNP [dm6]	T	C	4.346e^-4	0.856	INTRON CCHa1-R	TF binding site mE1_TFBS_HSA
3L	16737105	3L_16737105_SNP [dm3] 3L_16744005_SNP [dm6]	A	G	4.349e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	14572141	2R_14572141_SNP [dm3] 2R_18684636_SNP [dm6]	C	T	4.351e^-4	0.856	SYNONYMOUS_CODING CG44433 UPSTREAM CG44434 & 1 other
3L	15321323	3L_15321323_SNP [dm3] 3L_15328223_SNP [dm6]	A	T	4.355e^-4	0.856	INTERGENIC
3R	1891889	3R_1891889_SNP [dm3] 3R_6066167_SNP [dm6]	T	C	4.371e^-4	0.856	INTERGENIC
3R	1325160	3R_1325160_SNP [dm3] 3R_5499438_SNP [dm6]	A	G	4.375e^-4	0.856	UPSTREAM CG31547 INTRON CG31547
2R	19443925	2R_19443925_SNP [dm3] 2R_23556402_SNP [dm6]	T	G	4.382e^-4	0.856	UPSTREAM ItgalphaPS5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	11479133	2R_11479133_SNP [dm3] 2R_15591628_SNP [dm6]	C	G	4.399e^-4	0.856	INTERGENIC
3R	6323512	3R_6323512_SNP [dm3] 3R_10497790_SNP [dm6]	T	C	4.400e^-4	0.856	INTERGENIC
2L	5964574	2L_5964574_SNP [dm3] 2L_5964574_SNP [dm6]	C	T	4.401e^-4	0.856	UPSTREAM psd DOWNSTREAM CG13992 INTRON psd	TF binding site mE1_TFBS_cad
3L	18698775	3L_18698775_SNP [dm3] 3L_18705675_SNP [dm6]	C	T	4.410e^-4	0.856	INTERGENIC
3R	22419365	3R_22419365_SNP [dm3] 3R_26593643_SNP [dm6]	T	C	4.416e^-4	0.856	INTRON scrib
2L	12200215	2L_12200215_SNP [dm3] 2L_12200215_SNP [dm6]	T	C	4.417e^-4	0.856	INTRON aret
2R	7594806	2R_7594806_SNP [dm3] 2R_11707301_SNP [dm6]	A	T	4.420e^-4	0.856	INTERGENIC
3R	25675409	3R_25675409_SNP [dm3] 3R_29849687_SNP [dm6]	T	C	4.423e^-4	0.856	SYNONYMOUS_CODING Cad99C	TF binding site mE1_TFBS_cad
3R	12035964	3R_12035964_SNP [dm3] 3R_16210242_SNP [dm6]	G	A	4.424e^-4	0.856	UPSTREAM CR45638 DOWNSTREAM CR45637 INTERGENIC
3R	13045071	3R_13045071_SNP [dm3] 3R_17219349_SNP [dm6]	G	A	4.430e^-4	0.856	SYNONYMOUS_CODING CG31262
2R	10691533	2R_10691533_SNP [dm3] 2R_14804028_SNP [dm6]	G	A	4.430e^-4	0.856	INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	17220546	3L_17220546_SNP [dm3] 3L_17227446_SNP [dm6]	C	T	4.431e^-4	0.856	INTRON Rbp6
3L	6971294	3L_6971294_SNP [dm3] 3L_6978194_SNP [dm6]	T	G	4.433e^-4	0.856	INTRON Galphai EXON CR32385	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	4634276	3R_4634276_SNP [dm3] 3R_8808554_SNP [dm6]	G	C	4.435e^-4	0.856	UTR_3_PRIME CG9837 DOWNSTREAM hng2 & 1 other	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3L	16338553	3L_16338553_SNP [dm3] 3L_16345453_SNP [dm6]	T	C	4.437e^-4	0.856	UPSTREAM CG33257 DOWNSTREAM CG4998 INTERGENIC
2R	10884203	2R_10884203_MNP [dm3] 2R_14996698_MNP [dm6]	AGA	GCT	4.439e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_inv
X	13261746	X_13261746_SNP [dm3] X_13367713_SNP [dm6]	C	T	4.440e^-4	0.856	UTR_3_PRIME Syt12 UPSTREAM dmrt11E
2L	7895453	2L_7895453_SNP [dm3] 2L_7895453_SNP [dm6]	A	G	4.449e^-4	0.856	SYNONYMOUS_CODING Snoo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4012057	3L_4012057_SNP [dm3] 3L_4012057_SNP [dm6]	A	C	4.455e^-4	0.856	INTERGENIC
3R	26190126	3R_26190126_SNP [dm3] 3R_30364404_SNP [dm6]	G	A	4.457e^-4	0.856	UTR_3_PRIME hdc
2L	9261275	2L_9261275_SNP [dm3] 2L_9261275_SNP [dm6]	C	T	4.459e^-4	0.856	DOWNSTREAM CR45262 INTRON Ggamma30A
2L	5535005	2L_5535005_SNP [dm3] 2L_5535005_SNP [dm6]	T	A	4.467e^-4	0.856	DOWNSTREAM tomb INTRON Cap-D3
3R	21186972	3R_21186972_SNP [dm3] 3R_25361250_SNP [dm6]	G	T	4.474e^-4	0.856	INTRON Fur1
2R	14160812	2R_14160812_SNP [dm3] 2R_18273307_SNP [dm6]	G	A	4.479e^-4	0.856	INTERGENIC
X	10120771	X_10120771_SNP [dm3] X_10226738_SNP [dm6]	T	G	4.484e^-4	0.856	UTR_5_PRIME CG34408 INTRON CG34408	TF binding site BDTNP1_TFBS_twi
3L	2529118	3L_2529118_SNP [dm3] 3L_2529118_SNP [dm6]	A	G	4.492e^-4	0.856	INTRON Spn
X	9733762	X_9733762_SNP [dm3] X_9839729_SNP [dm6]	C	G	4.505e^-4	0.856	INTRON CG32698
2R	20033980	2R_20033980_SNP [dm3] 2R_24146457_SNP [dm6]	T	C	4.516e^-4	0.856	UPSTREAM Dat INTRON Dat
2R	10337960	2R_10337960_SNP [dm3] 2R_14450455_SNP [dm6]	C	A	4.517e^-4	0.856	INTRON Oaz	TF binding site mE1_TFBS_cad
3R	13488916	3R_13488916_SNP [dm3] 3R_17663194_SNP [dm6]	A	C	4.526e^-4	0.856	NON_SYNONYMOUS_CODING CG14322
2R	19445157	2R_19445157_SNP [dm3] 2R_23557634_SNP [dm6]	A	C	4.535e^-4	0.856	NON_SYNONYMOUS_CODING ItgalphaPS5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	13045213	3R_13045213_SNP [dm3] 3R_17219491_SNP [dm6]	A	T	4.546e^-4	0.856	INTRON CG31262
2R	8640392	2R_8640392_SNP [dm3] 2R_12752887_SNP [dm6]	A	G	4.554e^-4	0.856	SYNONYMOUS_CODING mos DOWNSTREAM Taz
2R	11307025	2R_11307025_SNP [dm3] 2R_15419520_SNP [dm6]	G	A	4.558e^-4	0.856	SYNONYMOUS_CODING CG43729
2R	5123248	2R_5123248_SNP [dm3] 2R_9235743_SNP [dm6]	A	G	4.561e^-4	0.856	INTRON hig	TF binding site mE1_TFBS_chinmo
2L	1907680	2L_1907680_SNP [dm3] 2L_1907680_SNP [dm6]	G	A	4.580e^-4	0.856	INTRON CG7337
3R	11997303	3R_11997303_SNP [dm3] 3R_16171581_SNP [dm6]	A	T	4.582e^-4	0.856	UTR_3_PRIME CG6006 UPSTREAM CG8925 DOWNSTREAM CG6006
X	10209434	X_10209434_SNP [dm3] X_10315401_SNP [dm6]	C	G	4.583e^-4	0.856	INTRON alpha-Man-I
3L	7463018	3L_7463018_SNP [dm3] 3L_7469918_SNP [dm6]	G	A	4.594e^-4	0.856	SYNONYMOUS_CODING CG8543
3L	7456856	3L_7456856_SNP [dm3] 3L_7463756_SNP [dm6]	G	C	4.596e^-4	0.856	INTERGENIC
2R	17016544	2R_17016544_SNP [dm3] 2R_21129039_SNP [dm6]	G	A	4.598e^-4	0.856	SYNONYMOUS_CODING mago UPSTREAM CG4050 DOWNSTREAM Magi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	10948931	3R_10948931_SNP [dm3] 3R_15123209_SNP [dm6]	G	C	4.602e^-4	0.856	INTRON CG42788
2L	19225415	2L_19225415_SNP [dm3] 2L_19225415_SNP [dm6]	A	C	4.608e^-4	0.856	INTERGENIC
3L	6805585	3L_6805585_SNP [dm3] 3L_6812485_SNP [dm6]	T	A	4.612e^-4	0.856	INTERGENIC
3L	14314805	3L_14314805_SNP [dm3] 3L_14321705_SNP [dm6]	A	G	4.621e^-4	0.856	DOWNSTREAM CR45025 INTRON fz	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	10642466	3L_10642466_SNP [dm3] 3L_10649366_SNP [dm6]	A	T	4.627e^-4	0.856	INTRON CG32066
3L	6938972	3L_6938972_SNP [dm3] 3L_6945872_SNP [dm6]	T	C	4.629e^-4	0.856	INTRON tow	TF binding site mE1_TFBS_Kr
2L	4366833	2L_4366833_SNP [dm3] 2L_4366833_SNP [dm6]	A	G	4.629e^-4	0.856	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	20049387	2R_20049387_SNP [dm3] 2R_24161864_SNP [dm6]	A	C	4.629e^-4	0.856	UPSTREAM CG3328 DOWNSTREAM spag INTERGENIC
2L	10014175	2L_10014175_SNP [dm3] 2L_10014175_SNP [dm6]	C	T	4.633e^-4	0.856	NON_SYNONYMOUS_CODING CG13131
2R	13540749	2R_13540749_SNP [dm3] 2R_17653244_SNP [dm6]	T	A	4.636e^-4	0.856	INTRON CCHa1-R
2L	20545337	2L_20545337_SNP [dm3] 2L_20545337_SNP [dm6]	T	C	4.644e^-4	0.856	INTERGENIC
2L	17308093	2L_17308093_SNP [dm3] 2L_17308093_SNP [dm6]	A	T	4.646e^-4	0.856	INTERGENIC
3R	14547394	3R_14547394_SNP [dm3] 3R_18721672_SNP [dm6]	C	T	4.651e^-4	0.856	DOWNSTREAM CG34283 INTRON Cha
2L	14340890	2L_14340890_SNP [dm3] 2L_14340890_SNP [dm6]	A	T	4.654e^-4	0.856	DOWNSTREAM CG15286 INTRON CG33090
3R	16699779	3R_16699779_SNP [dm3] 3R_20874057_SNP [dm6]	C	T	4.657e^-4	0.856	DOWNSTREAM TotC INTRON TotB
2L	5552507	2L_5552507_SNP [dm3] 2L_5552507_SNP [dm6]	G	A	4.659e^-4	0.856	SYNONYMOUS_CODING CG18269 DOWNSTREAM CG14013	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	5112244	2L_5112244_SNP [dm3] 2L_5112244_SNP [dm6]	C	A	4.662e^-4	0.856	INTRON Msp300
X	4292937	X_4292937_SNP [dm3] X_4398904_SNP [dm6]	G	A	4.666e^-4	0.856	INTRON CR32773
2L	14565546	2L_14565546_SNP [dm3] 2L_14565546_SNP [dm6]	A	G	4.668e^-4	0.856	INTERGENIC
2R	19298992	2R_19298992_SNP [dm3] 2R_23411469_SNP [dm6]	A	G	4.673e^-4	0.856	DOWNSTREAM CG9812 INTERGENIC
2L	12546805	2L_12546805_SNP [dm3] 2L_12546805_SNP [dm6]	T	C	4.673e^-4	0.856	UPSTREAM bun INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5143547	3L_5143547_SNP [dm3] 3L_5150447_SNP [dm6]	C	T	4.675e^-4	0.856	NON_SYNONYMOUS_CODING Gen DOWNSTREAM Aats-ala-m	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9187829	2L_9187829_SNP [dm3] 2L_9187829_SNP [dm6]	G	T	4.690e^-4	0.856	INTRON tai
2L	12508768	2L_12508768_SNP [dm3] 2L_12508768_SNP [dm6]	A	G	4.694e^-4	0.856	DOWNSTREAM snoRNA:CG43051-a & 1 other INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	2264785	3L_2264785_SNP [dm3] 3L_2264785_SNP [dm6]	G	A	4.696e^-4	0.856	SYNONYMOUS_CODING ecd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17941167	3L_17941167_SNP [dm3] 3L_17948067_SNP [dm6]	A	G	4.697e^-4	0.856	UPSTREAM CR45393 INTERGENIC
2L	14393222	2L_14393222_SNP [dm3] 2L_14393222_SNP [dm6]	T	C	4.698e^-4	0.856	INTRON elB	TF binding site mE1_TFBS_inv
3L	967586	3L_967586_SNP [dm3] 3L_967586_SNP [dm6]	C	T	4.699e^-4	0.856	INTRON Glut1
2L	5537595	2L_5537595_SNP [dm3] 2L_5537595_SNP [dm6]	G	A	4.700e^-4	0.856	SYNONYMOUS_CODING CG14015 UPSTREAM tomb	TF binding site mE1_TFBS_HSA mE1_TFBS_inv

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.258e^-6)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1645 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	5973155	3L_5973155_SNP [dm3] 3L_5980055_SNP [dm6]	A	G	9.994e^-8	0.187	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	11774646	2L_11774646_SNP [dm3] 2L_11774646_SNP [dm6]	G	A	8.324e^-7	0.606	INTERGENIC
X	14797734	X_14797734_SNP [dm3] X_14903701_SNP [dm6]	G	A	9.686e^-7	0.606	INTRON Flo2 & 1 other
2R	19299817	2R_19299817_SNP [dm3] 2R_23412294_SNP [dm6]	A	T	1.444e^-6	0.677	DOWNSTREAM CG9812 INTERGENIC
3L	3684231	3L_3684231_SNP [dm3] 3L_3684231_SNP [dm6]	C	A	1.977e^-6	0.742	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16308179	3L_16308179_SNP [dm3] 3L_16315079_SNP [dm6]	A	G	2.788e^-6	0.872	UTR_3_PRIME CG13062	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12088471	2L_12088471_SNP [dm3] 2L_12088471_SNP [dm6]	C	T	8.002e^-6	1	DOWNSTREAM CR44593 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3R	10219064	3R_10219064_SNP [dm3] 3R_14393342_SNP [dm6]	G	A	8.942e^-6	1	SYNONYMOUS_CODING cv-c
3R	5649760	3R_5649760_SNP [dm3] 3R_9824038_SNP [dm6]	T	C	1.246e^-5	1	UPSTREAM CG34302 DOWNSTREAM CR42858 INTERGENIC	TF binding site mE1_TFBS_cad
3R	16305473	3R_16305473_SNP [dm3] 3R_20479751_SNP [dm6]	T	C	1.448e^-5	1	INTRON Gfrl
3L	3684207	3L_3684207_SNP [dm3] 3L_3684207_SNP [dm6]	G	T	1.523e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10442328	3R_10442328_SNP [dm3] 3R_14616606_SNP [dm6]	G	A	1.697e^-5	1	INTRON CG14853
3L	2362796	3L_2362796_SNP [dm3] 3L_2362796_SNP [dm6]	T	A	1.758e^-5	1	DOWNSTREAM CG13801 INTERGENIC
3L	9051755	3L_9051755_SNP [dm3] 3L_9058655_SNP [dm6]	T	G	1.862e^-5	1	INTRON Argk	TF binding site mE1_TFBS_Trl
3L	20153010	3L_20153010_SNP [dm3] 3L_20159910_SNP [dm6]	T	C	2.046e^-5	1	INTRON CG42674
2L	2056605	2L_2056605_SNP [dm3] 2L_2056605_SNP [dm6]	C	G	2.087e^-5	1	INTRON Or22c
2R	16083156	2R_16083156_DEL [dm3] 2R_20195651_DEL [dm6]	CC	C	2.110e^-5	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7128927	3L_7128927_SNP [dm3] 3L_7135827_SNP [dm6]	G	A	2.152e^-5	1	INTRON melt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	19226376	3R_19226376_SNP [dm3] 3R_23400654_SNP [dm6]	G	T	2.200e^-5	1	UPSTREAM CR44323 INTERGENIC
3R	17455886	3R_17455886_SNP [dm3] 3R_21630164_SNP [dm6]	T	G	2.254e^-5	1	INTRON E2f	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	8810869	2L_8810869_SNP [dm3] 2L_8810869_SNP [dm6]	C	T	2.499e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12013678	3R_12013678_INS [dm3] 3R_16187956_INS [dm6]	A	AA	2.756e^-5	1	INTRON sra	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10851092	3R_10851092_SNP [dm3] 3R_15025370_SNP [dm6]	C	A	2.832e^-5	1	INTERGENIC
X	1929395	X_1929395_SNP [dm3] X_2035362_SNP [dm6]	A	G	2.836e^-5	1	UTR_5_PRIME Actn INTRON Actn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	10221175	2L_10221175_SNP [dm3] 2L_10221175_SNP [dm6]	T	C	2.973e^-5	1	UTR_5_PRIME Npc1a UPSTREAM Prosalpha6 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	2362793	3L_2362793_SNP [dm3] 3L_2362793_SNP [dm6]	C	A	3.190e^-5	1	DOWNSTREAM CG13801 INTERGENIC
3R	10851117	3R_10851117_SNP [dm3] 3R_15025395_SNP [dm6]	A	G	3.191e^-5	1	INTERGENIC
3R	16302386	3R_16302386_SNP [dm3] 3R_20476664_SNP [dm6]	C	G	3.514e^-5	1	INTRON Gfrl
2R	10034531	2R_10034531_DEL [dm3] 2R_14147026_DEL [dm6]	TT	T	3.622e^-5	1	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	22003399	2L_22003399_INS [dm3] 2L_22003399_INS [dm6]	G	GGGAGTTTCTGTTTTTTTAA...	3.647e^-5	1	INTERGENIC
2R	14532339	2R_14532339_SNP [dm3] 2R_18644834_SNP [dm6]	G	T	3.693e^-5	1	INTRON SP2637	TF binding site BDTNP1_TFBS_da
3L	9051774	3L_9051774_SNP [dm3] 3L_9058674_SNP [dm6]	T	A	3.760e^-5	1	INTRON Argk	TF binding site mE1_TFBS_Trl
2L	5023105	2L_5023105_SNP [dm3] 2L_5023105_SNP [dm6]	T	G	3.829e^-5	1	INTRON vkg
3R	5649837	3R_5649837_SNP [dm3] 3R_9824115_SNP [dm6]	G	C	3.832e^-5	1	UPSTREAM CG34302 DOWNSTREAM CR42858 INTERGENIC	TF binding site mE1_TFBS_cad
X	2947529	X_2947529_SNP [dm3] X_3053496_SNP [dm6]	A	C	3.887e^-5	1	INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	8541067	X_8541067_SNP [dm3] X_8647034_SNP [dm6]	C	T	3.970e^-5	1	INTRON oc
2L	14930097	2L_14930097_SNP [dm3] 2L_14930097_SNP [dm6]	C	T	3.985e^-5	1	SYNONYMOUS_CODING CG3491 INTRON CG42313
3R	18166159	3R_18166159_SNP [dm3] 3R_22340437_SNP [dm6]	T	A	4.014e^-5	1	UPSTREAM CG5388 DOWNSTREAM CG5386 INTERGENIC
X	4998002	X_4998002_SNP [dm3] X_5103969_SNP [dm6]	A	C	4.215e^-5	1	INTRON rg & 1 other
2L	968990	2L_968990_SNP [dm3] 2L_968990_SNP [dm6]	C	A	4.229e^-5	1	INTERGENIC
3R	10250977	3R_10250977_SNP [dm3] 3R_14425255_SNP [dm6]	A	G	4.292e^-5	1	INTRON cv-c
X	3320777	X_3320777_SNP [dm3] X_3426744_SNP [dm6]	C	G	4.337e^-5	1	DOWNSTREAM tRNA:CR32493 INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	14138085	2R_14138085_SNP [dm3] 2R_18250580_SNP [dm6]	C	G	4.451e^-5	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	10870269	2L_10870269_SNP [dm3] 2L_10870269_SNP [dm6]	T	C	4.491e^-5	1	SYNONYMOUS_CODING CG12517 UPSTREAM CR45453	TF binding site mE1_TFBS_inv
3L	13936559	3L_13936559_SNP [dm3] 3L_13943459_SNP [dm6]	T	C	4.574e^-5	1	INTRON CG32137
X	2947559	X_2947559_SNP [dm3] X_3053526_SNP [dm6]	G	T	4.604e^-5	1	INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	15139298	3L_15139298_SNP [dm3] 3L_15146198_SNP [dm6]	T	C	4.941e^-5	1	UTR_3_PRIME Pex3 UPSTREAM FucTA DOWNSTREAM Pex3
3L	7128217	3L_7128217_SNP [dm3] 3L_7135117_SNP [dm6]	A	T	5.044e^-5	1	UTR_5_PRIME melt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	4374308	3R_4374308_SNP [dm3] 3R_8548586_SNP [dm6]	A	T	5.049e^-5	1	INTERGENIC
2L	11955590	2L_11955590_SNP [dm3] 2L_11955590_SNP [dm6]	T	C	5.070e^-5	1	DOWNSTREAM CR43314 EXON CR43314	TF binding site mE1_TFBS_cnc
2R	11815557	2R_11815557_SNP [dm3] 2R_15928052_SNP [dm6]	T	G	5.097e^-5	1	UTR_5_PRIME bdg INTRON bdg
X	18430710	X_18430710_SNP [dm3] X_18536677_SNP [dm6]	C	T	5.099e^-5	1	INTRON Bx
3L	15713426	3L_15713426_SNP [dm3] 3L_15720326_SNP [dm6]	G	A	5.230e^-5	1	DOWNSTREAM CG42570 INTERGENIC
2R	19304610	2R_19304610_SNP [dm3] 2R_23417087_SNP [dm6]	T	C	5.308e^-5	1	UTR_3_PRIME CG30411 INTRON CG9812	TF binding site mE1_TFBS_HSA
2R	11492698	2R_11492698_SNP [dm3] 2R_15605193_SNP [dm6]	T	A	5.379e^-5	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	7658780	3L_7658780_SNP [dm3] 3L_7665680_SNP [dm6]	G	A	5.508e^-5	1	SYNONYMOUS_CODING CG44195 UTR_3_PRIME Ank2 INTRON CG32373 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	12078160	2L_12078160_SNP [dm3] 2L_12078160_SNP [dm6]	T	C	5.512e^-5	1	DOWNSTREAM CG14947 INTERGENIC	regulatory region REDfly_CRMs
3R	17550438	3R_17550438_SNP [dm3] 3R_21724716_SNP [dm6]	T	C	5.571e^-5	1	INTERGENIC
2L	22002879	2L_22002879_INS [dm3] 2L_22002879_INS [dm6]	A	AGTTTCCTTGCCCACTATTA...	5.616e^-5	1	INTERGENIC	transposable element FlyBase
2R	10034463	2R_10034463_INS [dm3] 2R_14146958_INS [dm6]	G	TA	5.620e^-5	1	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	8681380	3L_8681380_SNP [dm3] 3L_8688280_SNP [dm6]	C	T	5.629e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9587906	3R_9587906_SNP [dm3] 3R_13762184_SNP [dm6]	A	G	5.657e^-5	1	UTR_3_PRIME CG34383 DOWNSTREAM CG34383 INTRON CG34383
3R	23026604	3R_23026604_SNP [dm3] 3R_27200882_SNP [dm6]	G	A	5.794e^-5	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da
3L	8601639	3L_8601639_SNP [dm3] 3L_8608539_SNP [dm6]	A	G	5.867e^-5	1	UTR_5_PRIME CG6282 INTRON CG6282
X	2601043	X_2601043_SNP [dm3] X_2707010_SNP [dm6]	G	A	5.980e^-5	1	SYNONYMOUS_CODING CG2680 DOWNSTREAM eIF2B-beta	TF binding site mE1_TFBS_cad
3R	16307019	3R_16307019_SNP [dm3] 3R_20481297_SNP [dm6]	A	G	6.043e^-5	1	UTR_5_PRIME Gfrl INTRON Gfrl
3L	15625560	3L_15625560_SNP [dm3] 3L_15632460_SNP [dm6]	T	C	6.134e^-5	1	UTR_5_PRIME comm3 INTRON comm3
3L	2833704	3L_2833704_SNP [dm3] 3L_2833704_SNP [dm6]	T	A	6.169e^-5	1	INTRON CG43444
3R	17522722	3R_17522722_SNP [dm3] 3R_21697000_SNP [dm6]	G	A	6.296e^-5	1	INTRON CG31176
2L	9886885	2L_9886885_SNP [dm3] 2L_9886885_SNP [dm6]	A	G	6.461e^-5	1	UPSTREAM CR44701 & 1 other INTERGENIC
2R	17016375	2R_17016375_SNP [dm3] 2R_21128870_SNP [dm6]	A	G	6.490e^-5	1	SYNONYMOUS_CODING mago UPSTREAM CG4050 DOWNSTREAM Magi	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	12013601	3R_12013601_SNP [dm3] 3R_16187879_SNP [dm6]	A	C	6.594e^-5	1	UPSTREAM Bin1 INTRON sra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	11328454	3L_11328454_SNP [dm3] 3L_11335354_SNP [dm6]	A	T	6.614e^-5	1	INTERGENIC
3R	17632541	3R_17632541_SNP [dm3] 3R_21806819_SNP [dm6]	T	C	6.713e^-5	1	INTRON CASK
2R	19301229	2R_19301229_SNP [dm3] 2R_23413706_SNP [dm6]	C	G	6.717e^-5	1	NON_SYNONYMOUS_CODING CG9812 INTRON CG9812
3L	8440660	3L_8440660_SNP [dm3] 3L_8447560_SNP [dm6]	G	A	6.759e^-5	1	INTRON CG6983
3R	17867761	3R_17867761_SNP [dm3] 3R_22042039_SNP [dm6]	C	T	6.766e^-5	1	UPSTREAM how INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
3R	14146261	3R_14146261_SNP [dm3] 3R_18320539_SNP [dm6]	C	T	6.821e^-5	1	INTRON CG31235
3R	18163808	3R_18163808_SNP [dm3] 3R_22338086_SNP [dm6]	C	A	6.828e^-5	1	INTRON CG5388
2L	20025356	2L_20025356_SNP [dm3] 2L_20025356_SNP [dm6]	C	T	6.844e^-5	1	SYNONYMOUS_CODING CG10659
2L	4589702	2L_4589702_SNP [dm3] 2L_4589702_SNP [dm6]	G	A	6.847e^-5	1	INTRON dp
2L	15348502	2L_15348502_INS [dm3] 2L_15348502_INS [dm6]	C	CCTGGCCATAAT...	6.911e^-5	1	INTERGENIC
3R	12013572	3R_12013572_SNP [dm3] 3R_16187850_SNP [dm6]	C	T	6.942e^-5	1	UPSTREAM Bin1 INTRON sra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	15139295	3L_15139295_SNP [dm3] 3L_15146195_SNP [dm6]	T	A	7.131e^-5	1	UTR_3_PRIME Pex3 UPSTREAM FucTA DOWNSTREAM Pex3
3L	15139292	3L_15139292_SNP [dm3] 3L_15146192_SNP [dm6]	G	A	7.141e^-5	1	UTR_3_PRIME Pex3 UPSTREAM FucTA DOWNSTREAM Pex3
X	3615217	X_3615217_INS [dm3] X_3721184_INS [dm6]	A	AA	7.358e^-5	1	INTRON tlk	TF binding site BDTNP1_TFBS_dl
3L	5807122	3L_5807122_INS [dm3] 3L_5814022_INS [dm6]	A	AA	7.379e^-5	1	UTR_3_PRIME vn UPSTREAM mad2 INTRON vn	TF binding site mE1_TFBS_HSA
3R	18157029	3R_18157029_SNP [dm3] 3R_22331307_SNP [dm6]	A	G	7.482e^-5	1	SYNONYMOUS_CODING CG33721 UPSTREAM CG13862 DOWNSTREAM CG7080
3L	2363001	3L_2363001_SNP [dm3] 3L_2363001_SNP [dm6]	G	A	7.495e^-5	1	DOWNSTREAM CG13801 INTERGENIC
3L	7581646	3L_7581646_SNP [dm3] 3L_7588546_SNP [dm6]	A	G	7.604e^-5	1	DOWNSTREAM CG7716 INTERGENIC
3R	11421184	3R_11421184_SNP [dm3] 3R_15595462_SNP [dm6]	A	G	7.854e^-5	1	INTERGENIC
2L	15276638	2L_15276638_SNP [dm3] 2L_15276638_SNP [dm6]	A	C	7.875e^-5	1	INTERGENIC
2R	14469993	2R_14469993_SNP [dm3] 2R_18582488_SNP [dm6]	G	C	7.890e^-5	1	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
X	2949185	X_2949185_SNP [dm3] X_3055152_SNP [dm6]	C	T	7.900e^-5	1	INTRON kirre
2R	17016378	2R_17016378_SNP [dm3] 2R_21128873_SNP [dm6]	A	G	7.907e^-5	1	SYNONYMOUS_CODING mago UPSTREAM CG4050 DOWNSTREAM Magi	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	11298601	3R_11298601_SNP [dm3] 3R_15472879_SNP [dm6]	G	T	7.990e^-5	1	INTRON AdamTS-A	TF binding site mE1_TFBS_zfh1
3R	24268116	3R_24268116_SNP [dm3] 3R_28442394_SNP [dm6]	C	T	8.094e^-5	1	INTRON beat-VI
2R	11381826	2R_11381826_SNP [dm3] 2R_15494321_SNP [dm6]	C	A	8.117e^-5	1	INTRON CG12964
2L	9841717	2L_9841717_SNP [dm3] 2L_9841717_SNP [dm6]	T	A	8.188e^-5	1	INTRON nAChRalpha6
2L	7617932	2L_7617932_SNP [dm3] 2L_7617932_SNP [dm6]	G	A	8.201e^-5	1	INTERGENIC
X	2947565	X_2947565_SNP [dm3] X_3053532_SNP [dm6]	C	G	8.377e^-5	1	INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	17522710	3R_17522710_SNP [dm3] 3R_21696988_SNP [dm6]	A	T	8.391e^-5	1	INTRON CG31176
3R	24269856	3R_24269856_SNP [dm3] 3R_28444134_SNP [dm6]	C	A	8.395e^-5	1	INTRON beat-VI
2R	16611358	2R_16611358_SNP [dm3] 2R_20723853_SNP [dm6]	T	C	8.442e^-5	1	DOWNSTREAM CR44660 INTRON dpr
X	2947494	X_2947494_SNP [dm3] X_3053461_SNP [dm6]	G	T	8.501e^-5	1	INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	4374307	3R_4374307_SNP [dm3] 3R_8548585_SNP [dm6]	C	A	8.509e^-5	1	INTERGENIC
3R	18156805	3R_18156805_SNP [dm3] 3R_22331083_SNP [dm6]	A	G	8.529e^-5	1	SYNONYMOUS_CODING CG33721 UPSTREAM CG13862 DOWNSTREAM CG7080
3R	12013545	3R_12013545_SNP [dm3] 3R_16187823_SNP [dm6]	A	G	8.642e^-5	1	UPSTREAM Bin1 INTRON sra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	14631653	3L_14631653_SNP [dm3] 3L_14638553_SNP [dm6]	G	A	8.649e^-5	1	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	2606667	2R_2606667_SNP [dm3] 2R_6719162_SNP [dm6]	C	T	8.654e^-5	1	SYNONYMOUS_CODING Zip42C.2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	13555439	3L_13555439_SNP [dm3] 3L_13562339_SNP [dm6]	G	C	8.756e^-5	1	INTRON bru-3	TF binding site mE1_TFBS_chinmo
3L	1167031	3L_1167031_SNP [dm3] 3L_1167031_SNP [dm6]	A	T	8.768e^-5	1	INTRON bab2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	7658776	3L_7658776_SNP [dm3] 3L_7665676_SNP [dm6]	G	T	9.060e^-5	1	NON_SYNONYMOUS_CODING CG44195 UTR_3_PRIME Ank2 INTRON CG32373 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	7658786	3L_7658786_SNP [dm3] 3L_7665686_SNP [dm6]	A	G	9.060e^-5	1	SYNONYMOUS_CODING CG44195 UTR_3_PRIME Ank2 INTRON CG32373 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	18163851	3R_18163851_SNP [dm3] 3R_22338129_SNP [dm6]	C	A	9.123e^-5	1	INTRON CG5388
X	2947519	X_2947519_SNP [dm3] X_3053486_SNP [dm6]	C	T	9.295e^-5	1	INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	4459472	2L_4459472_SNP [dm3] 2L_4459472_SNP [dm6]	G	T	9.335e^-5	1	UPSTREAM CG15435 INTRON mRpL27	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	13568314	2L_13568314_SNP [dm3] 2L_13568314_SNP [dm6]	A	G	9.348e^-5	1	INTRON kuz
2L	5770184	2L_5770184_SNP [dm3] 2L_5770184_SNP [dm6]	T	C	9.508e^-5	1	SYNONYMOUS_CODING CG9171 INTRON CR31912	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16722875	3L_16722875_SNP [dm3] 3L_16729775_SNP [dm6]	G	T	9.518e^-5	1	SPLICE_SITE_REGION Dbp73D SYNONYMOUS_CODING Dbp73D	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19569424	3L_19569424_SNP [dm3] 3L_19576324_SNP [dm6]	T	A	9.527e^-5	1	INTRON Shal
3R	24263158	3R_24263158_SNP [dm3] 3R_28437436_SNP [dm6]	T	C	9.550e^-5	1	INTRON beat-VI
2R	18477580	2R_18477580_SNP [dm3] 2R_22590075_SNP [dm6]	T	G	9.732e^-5	1	INTRON dnr1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	3914997	X_3914997_SNP [dm3] X_4020964_SNP [dm6]	T	C	9.759e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	9584462	3L_9584462_SNP [dm3] 3L_9591362_SNP [dm6]	A	T	9.800e^-5	1	INTRON CG42673
3L	7574461	3L_7574461_SNP [dm3] 3L_7581361_SNP [dm6]	A	G	9.996e^-5	1	INTERGENIC
3L	7581647	3L_7581647_SNP [dm3] 3L_7588547_SNP [dm6]	T	C	1.008e^-4	1	DOWNSTREAM CG7716 INTERGENIC
3L	11593099	3L_11593099_SNP [dm3] 3L_11599999_SNP [dm6]	G	T	1.009e^-4	1	UPSTREAM CG14137 INTRON CG7368
3L	4799068	3L_4799068_SNP [dm3] 3L_4799068_SNP [dm6]	C	A	1.029e^-4	1	UPSTREAM CR45740 INTERGENIC
2R	17572974	2R_17572974_SNP [dm3] 2R_21685469_SNP [dm6]	C	G	1.039e^-4	1	DOWNSTREAM CG30263 & 1 other INTRON CG10306	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	17572980	2R_17572980_SNP [dm3] 2R_21685475_SNP [dm6]	T	G	1.039e^-4	1	DOWNSTREAM CG30263 & 1 other INTRON CG10306	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	4330090	2L_4330090_SNP [dm3] 2L_4330090_SNP [dm6]	A	C	1.054e^-4	1	INTRON CG16857
X	2947538	X_2947538_SNP [dm3] X_3053505_SNP [dm6]	A	C	1.057e^-4	1	INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	18151295	3R_18151295_SNP [dm3] 3R_22325573_SNP [dm6]	G	C	1.060e^-4	1	INTERGENIC
X	2949169	X_2949169_SNP [dm3] X_3055136_SNP [dm6]	C	T	1.070e^-4	1	INTRON kirre
2L	294234	2L_294234_SNP [dm3] 2L_294234_SNP [dm6]	G	A	1.074e^-4	1	SYNONYMOUS_CODING U2af38 UPSTREAM Hop	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	19559915	3L_19559915_INS [dm3] 3L_19566815_INS [dm6]	T	TT	1.080e^-4	1	DOWNSTREAM Shal INTERGENIC
2L	1201811	2L_1201811_DEL [dm3] 2L_1201811_DEL [dm6]	GGGATGATA	G	1.084e^-4	1	DOWNSTREAM CG5011 INTERGENIC	TF binding site mE1_TFBS_cad
2L	14340844	2L_14340844_INS [dm3] 2L_14340844_INS [dm6]	A	ACAAACAAA	1.093e^-4	1	DOWNSTREAM CG15286 INTRON CG33090
2R	17575877	2R_17575877_SNP [dm3] 2R_21688372_SNP [dm6]	T	A	1.094e^-4	1	NON_SYNONYMOUS_CODING CG30285 UPSTREAM Tbp & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15139262	3L_15139262_SNP [dm3] 3L_15146162_SNP [dm6]	A	C	1.101e^-4	1	UTR_3_PRIME Pex3 UPSTREAM FucTA DOWNSTREAM Pex3
2R	13055838	2R_13055838_SNP [dm3] 2R_17168333_SNP [dm6]	C	T	1.113e^-4	1	INTERGENIC
3R	11497107	3R_11497107_SNP [dm3] 3R_15671385_SNP [dm6]	C	G	1.122e^-4	1	INTRON pxb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	19300165	2R_19300165_SNP [dm3] 2R_23412642_SNP [dm6]	T	C	1.126e^-4	1	UTR_3_PRIME CG9812
2R	19300168	2R_19300168_SNP [dm3] 2R_23412645_SNP [dm6]	A	G	1.126e^-4	1	UTR_3_PRIME CG9812
2R	11506470	2R_11506470_SNP [dm3] 2R_15618965_SNP [dm6]	A	G	1.130e^-4	1	INTRON CG42524
3R	17522729	3R_17522729_SNP [dm3] 3R_21697007_SNP [dm6]	A	C	1.133e^-4	1	INTRON CG31176
2L	5687843	2L_5687843_SNP [dm3] 2L_5687843_SNP [dm6]	T	C	1.140e^-4	1	INTERGENIC
3R	12013634	3R_12013634_SNP [dm3] 3R_16187912_SNP [dm6]	C	T	1.148e^-4	1	INTRON sra	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12387713	2L_12387713_SNP [dm3] 2L_12387713_SNP [dm6]	C	A	1.148e^-4	1	INTRON bru-2
3L	4725831	3L_4725831_SNP [dm3] 3L_4725831_SNP [dm6]	A	G	1.149e^-4	1	INTRON RhoGEF64C	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	17027139	3L_17027139_SNP [dm3] 3L_17034039_SNP [dm6]	T	A	1.150e^-4	1	UPSTREAM CR43250 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	13021134	3R_13021134_SNP [dm3] 3R_17195412_SNP [dm6]	A	C	1.166e^-4	1	INTRON Mur89F
3R	13372488	3R_13372488_SNP [dm3] 3R_17546766_SNP [dm6]	C	T	1.166e^-4	1	UPSTREAM Prx3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24928898	3R_24928898_SNP [dm3] 3R_29103176_SNP [dm6]	A	G	1.180e^-4	1	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11822429	2L_11822429_SNP [dm3] 2L_11822429_SNP [dm6]	T	G	1.182e^-4	1	UPSTREAM Pde1c INTRON Pde1c
2L	1749711	2L_1749711_SNP [dm3] 2L_1749711_SNP [dm6]	G	C	1.182e^-4	1	DOWNSTREAM CG17712 INTRON CG17646
X	3320827	X_3320827_SNP [dm3] X_3426794_SNP [dm6]	A	T	1.183e^-4	1	DOWNSTREAM tRNA:CR32493 INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	12250889	2L_12250889_SNP [dm3] 2L_12250889_SNP [dm6]	G	A	1.186e^-4	1	INTRON aret
3R	10419810	3R_10419810_SNP [dm3] 3R_14594088_SNP [dm6]	T	C	1.190e^-4	1	INTRON stumps
2L	7631243	2L_7631243_DEL [dm3] 2L_7631243_DEL [dm6]	CCTATGTTG	C	1.193e^-4	1	INTERGENIC
2L	10215899	2L_10215899_SNP [dm3] 2L_10215899_SNP [dm6]	G	A	1.195e^-4	1	SYNONYMOUS_CODING Npc1a	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	17633778	3L_17633778_SNP [dm3] 3L_17640678_SNP [dm6]	T	C	1.199e^-4	1	INTRON Pep
3R	17723076	3R_17723076_SNP [dm3] 3R_21897354_SNP [dm6]	A	G	1.200e^-4	1	INTRON CG6678
3R	25487817	3R_25487817_SNP [dm3] 3R_29662095_SNP [dm6]	G	T	1.204e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15139677	3L_15139677_SNP [dm3] 3L_15146577_SNP [dm6]	C	A	1.214e^-4	1	UPSTREAM FucTA DOWNSTREAM Pex3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11948886	2R_11948886_SNP [dm3] 2R_16061381_SNP [dm6]	T	C	1.218e^-4	1	DOWNSTREAM CG8405 INTERGENIC
2L	10074325	2L_10074325_SNP [dm3] 2L_10074325_SNP [dm6]	A	G	1.222e^-4	1	INTRON CG44153
3L	18653057	3L_18653057_SNP [dm3] 3L_18659957_SNP [dm6]	C	T	1.223e^-4	1	INTRON MYPT-75D
3L	1400388	3L_1400388_INS [dm3] 3L_1400388_INS [dm6]	G	GG	1.224e^-4	1	SPLICE_SITE_REGION CG32320 INTRON Ptp61F & 1 other
2L	5461968	2L_5461968_SNP [dm3] 2L_5461968_SNP [dm6]	T	A	1.227e^-4	1	SYNONYMOUS_CODING mid	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	7128557	3L_7128557_SNP [dm3] 3L_7135457_SNP [dm6]	T	C	1.233e^-4	1	INTRON melt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	4459476	2L_4459476_SNP [dm3] 2L_4459476_SNP [dm6]	G	A	1.241e^-4	1	UPSTREAM CG15435 INTRON mRpL27	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	16722891	3L_16722891_SNP [dm3] 3L_16729791_SNP [dm6]	C	T	1.250e^-4	1	INTRON Dbp73D	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	15645604	X_15645604_SNP [dm3] X_15751571_SNP [dm6]	A	T	1.264e^-4	1	UTR_3_PRIME CG8239 DOWNSTREAM Graf & 1 other
3L	18100385	3L_18100385_SNP [dm3] 3L_18107285_SNP [dm6]	A	G	1.279e^-4	1	SYNONYMOUS_CODING mRpS26 DOWNSTREAM CG5147	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11421319	3R_11421319_INS [dm3] 3R_15595597_INS [dm6]	T	TCATATT	1.282e^-4	1	INTERGENIC
3R	25934254	3R_25934254_SNP [dm3] 3R_30108532_SNP [dm6]	A	G	1.285e^-4	1	INTRON sima	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	18157545	3R_18157545_SNP [dm3] 3R_22331823_SNP [dm6]	T	G	1.297e^-4	1	UPSTREAM CG13862 DOWNSTREAM CG33721 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	18151213	3R_18151213_SNP [dm3] 3R_22325491_SNP [dm6]	G	C	1.312e^-4	1	INTERGENIC
3R	4806554	3R_4806554_SNP [dm3] 3R_8980832_SNP [dm6]	C	G	1.313e^-4	1	UPSTREAM CAHbeta INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	17038080	2L_17038080_SNP [dm3] 2L_17038080_SNP [dm6]	A	C	1.315e^-4	1	INTERGENIC
3L	11197495	3L_11197495_SNP [dm3] 3L_11204395_SNP [dm6]	T	C	1.329e^-4	1	INTRON Plod
3L	11593221	3L_11593221_SNP [dm3] 3L_11600121_SNP [dm6]	G	T	1.337e^-4	1	UPSTREAM CG14137 INTRON CG7368
X	12145814	X_12145814_INS [dm3] X_12251781_INS [dm6]	G	GGGATTG	1.344e^-4	1	INTRON Ten-a	TF binding site mE1_TFBS_inv
X	3620037	X_3620037_INS [dm3] X_3726004_INS [dm6]	T	TGTAT	1.346e^-4	1	INTRON tlk	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	1201821	2L_1201821_INS [dm3] 2L_1201821_INS [dm6]	A	ACAAA	1.348e^-4	1	DOWNSTREAM CG5011 INTERGENIC	TF binding site mE1_TFBS_cad
3R	25095068	3R_25095068_SNP [dm3] 3R_29269346_SNP [dm6]	G	C	1.357e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	9842951	2L_9842951_SNP [dm3] 2L_9842951_SNP [dm6]	C	T	1.361e^-4	1	INTRON nAChRalpha6
3R	21708549	3R_21708549_SNP [dm3] 3R_25882827_SNP [dm6]	T	A	1.380e^-4	1	INTRON SppL	TF binding site BDTNP1_TFBS_dl
3L	21628229	3L_21628229_SNP [dm3] 3L_21635129_SNP [dm6]	T	C	1.386e^-4	1	UPSTREAM ORMDL & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	6485575	3L_6485575_SNP [dm3] 3L_6492475_SNP [dm6]	A	G	1.390e^-4	1	SYNONYMOUS_CODING CG10144	TF binding site mE1_TFBS_sens
3R	5307373	3R_5307373_SNP [dm3] 3R_9481651_SNP [dm6]	G	A	1.398e^-4	1	INTRON CG16779
3R	11421123	3R_11421123_SNP [dm3] 3R_15595401_SNP [dm6]	G	T	1.400e^-4	1	INTERGENIC
2L	5112244	2L_5112244_SNP [dm3] 2L_5112244_SNP [dm6]	C	A	1.406e^-4	1	INTRON Msp300
3R	10012825	3R_10012825_SNP [dm3] 3R_14187103_SNP [dm6]	C	T	1.413e^-4	1	INTRON Dop1R1
3L	15139351	3L_15139351_SNP [dm3] 3L_15146251_SNP [dm6]	T	A	1.416e^-4	1	UTR_3_PRIME Pex3 UPSTREAM FucTA DOWNSTREAM Pex3	TF binding site BDTNP1_TFBS_dl
2R	14193546	2R_14193546_SNP [dm3] 2R_18306041_SNP [dm6]	A	C	1.422e^-4	1	UTR_5_PRIME sbb INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3R	2136550	3R_2136550_SNP [dm3] 3R_6310828_SNP [dm6]	G	A	1.434e^-4	1	NON_SYNONYMOUS_CODING CG31560 UPSTREAM Osi17	TF binding site mE1_TFBS_HSA
3R	4810104	3R_4810104_SNP [dm3] 3R_8984382_SNP [dm6]	A	T	1.439e^-4	1	UPSTREAM CG11970 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2R	12010039	2R_12010039_SNP [dm3] 2R_16122534_SNP [dm6]	C	T	1.441e^-4	1	SYNONYMOUS_CODING Jhe UPSTREAM CG30095
2L	8492854	2L_8492854_SNP [dm3] 2L_8492854_SNP [dm6]	C	A	1.449e^-4	1	INTRON Dh31
3R	24934834	3R_24934834_SNP [dm3] 3R_29109112_SNP [dm6]	A	T	1.466e^-4	1	UTR_3_PRIME alpha-Man-Ib DOWNSTREAM CG11873
X	2947586	X_2947586_DEL [dm3] X_3053553_DEL [dm6]	TTGTATCT	T	1.476e^-4	1	INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	14971530	2R_14971530_SNP [dm3] 2R_19084025_SNP [dm6]	A	T	1.492e^-4	1	INTRON 5-HT1A
2R	10034388	2R_10034388_SNP [dm3] 2R_14146883_SNP [dm6]	A	C	1.496e^-4	1	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	7854863	3R_7854863_SNP [dm3] 3R_12029141_SNP [dm6]	T	A	1.499e^-4	1	UTR_5_PRIME CG42505 UTR_3_PRIME CG42504 & 1 other INTRON CG31358
2L	22003454	2L_22003454_SNP [dm3] 2L_22003454_SNP [dm6]	G	T	1.503e^-4	1	INTERGENIC
2L	15348562	2L_15348562_SNP [dm3] 2L_15348562_SNP [dm6]	A	T	1.510e^-4	1	INTERGENIC
3L	8833986	3L_8833986_SNP [dm3] 3L_8840886_SNP [dm6]	G	T	1.529e^-4	1	INTRON dally	TF binding site mE1_TFBS_HSA
2L	11955530	2L_11955530_SNP [dm3] 2L_11955530_SNP [dm6]	T	A	1.535e^-4	1	DOWNSTREAM CR43314 EXON CR43314	TF binding site mE1_TFBS_cnc
3L	764717	3L_764717_DEL [dm3] 3L_764717_DEL [dm6]	GG	G	1.544e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	14546160	3R_14546160_SNP [dm3] 3R_18720438_SNP [dm6]	C	T	1.545e^-4	1	INTRON Cha
3R	25899317	3R_25899317_SNP [dm3] 3R_30073595_SNP [dm6]	C	T	1.552e^-4	1	INTRON sima	TF binding site mE1_TFBS_chinmo
2L	8807181	2L_8807181_SNP [dm3] 2L_8807181_SNP [dm6]	G	A	1.554e^-4	1	INTERGENIC
3L	22217203	3L_22217203_SNP [dm3] 3L_22224103_SNP [dm6]	C	G	1.580e^-4	1	INTRON olf413	TF binding site BDTNP1_TFBS_dl
2L	5582344	2L_5582344_SNP [dm3] 2L_5582344_SNP [dm6]	A	C	1.582e^-4	1	INTERGENIC
2L	5690708	2L_5690708_SNP [dm3] 2L_5690708_SNP [dm6]	T	C	1.594e^-4	1	DOWNSTREAM CR44820 INTRON CR44819 EXON CR44820
3L	11328655	3L_11328655_SNP [dm3] 3L_11335555_SNP [dm6]	G	A	1.601e^-4	1	INTERGENIC
3R	23481119	3R_23481119_SNP [dm3] 3R_27655397_SNP [dm6]	A	G	1.607e^-4	1	INTRON tau
2R	17806419	2R_17806419_SNP [dm3] 2R_21918914_SNP [dm6]	T	C	1.608e^-4	1	INTRON Fili
3L	16726688	3L_16726688_SNP [dm3] 3L_16733588_SNP [dm6]	A	T	1.635e^-4	1	UTR_5_PRIME CG9701
3R	24724210	3R_24724210_SNP [dm3] 3R_28898488_SNP [dm6]	G	T	1.648e^-4	1	INTRON Doa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11009651	3L_11009651_SNP [dm3] 3L_11016551_SNP [dm6]	C	T	1.654e^-4	1	INTERGENIC
2R	17016387	2R_17016387_SNP [dm3] 2R_21128882_SNP [dm6]	A	G	1.654e^-4	1	SYNONYMOUS_CODING mago UPSTREAM CG4050 DOWNSTREAM Magi	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	25228857	3R_25228857_SNP [dm3] 3R_29403135_SNP [dm6]	G	C	1.659e^-4	1	INTRON Ptp99A
2R	13181419	2R_13181419_SNP [dm3] 2R_17293914_SNP [dm6]	A	C	1.663e^-4	1	INTRON mbl
3R	25487865	3R_25487865_SNP [dm3] 3R_29662143_SNP [dm6]	C	T	1.677e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9841712	2L_9841712_SNP [dm3] 2L_9841712_SNP [dm6]	C	T	1.677e^-4	1	INTRON nAChRalpha6
2R	17806417	2R_17806417_SNP [dm3] 2R_21918912_SNP [dm6]	G	A	1.681e^-4	1	INTRON Fili
3L	2702885	3L_2702885_SNP [dm3] 3L_2702885_SNP [dm6]	A	G	1.692e^-4	1	INTRON Fife
2R	14490740	2R_14490740_SNP [dm3] 2R_18603235_SNP [dm6]	T	G	1.700e^-4	1	INTRON GEFmeso	TF binding site mE1_TFBS_HSA
2R	14193545	2R_14193545_SNP [dm3] 2R_18306040_SNP [dm6]	A	G	1.717e^-4	1	UTR_5_PRIME sbb INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2R	18066762	2R_18066762_SNP [dm3] 2R_22179257_SNP [dm6]	C	T	1.717e^-4	1	UPSTREAM CG11170 & 1 other INTRON CG11170	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	18159725	3R_18159725_SNP [dm3] 3R_22334003_SNP [dm6]	G	A	1.731e^-4	1	UTR_5_PRIME CG5391 DOWNSTREAM CG5388
2L	16359031	2L_16359031_SNP [dm3] 2L_16359031_SNP [dm6]	T	C	1.737e^-4	1	INTERGENIC
3R	24578264	3R_24578264_SNP [dm3] 3R_28752542_SNP [dm6]	T	G	1.744e^-4	1	UPSTREAM CG10000 INTERGENIC
3R	11496671	3R_11496671_SNP [dm3] 3R_15670949_SNP [dm6]	G	A	1.751e^-4	1	INTRON pxb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2111329	2L_2111329_INS [dm3] 2L_2111329_INS [dm6]	A	AA	1.756e^-4	1	INTERGENIC
3R	13551535	3R_13551535_SNP [dm3] 3R_17725813_SNP [dm6]	C	T	1.764e^-4	1	UTR_5_PRIME Lgr1 UPSTREAM Atg8b	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	5638574	2L_5638574_SNP [dm3] 2L_5638574_SNP [dm6]	A	G	1.766e^-4	1	INTRON CG31646
3R	22853138	3R_22853138_SNP [dm3] 3R_27027416_SNP [dm6]	G	T	1.768e^-4	1	INTRON RYa-R
3L	21967948	3L_21967948_SNP [dm3] 3L_21974848_SNP [dm6]	T	C	1.798e^-4	1	INTRON CG7470
3R	24730098	3R_24730098_SNP [dm3] 3R_28904376_SNP [dm6]	T	A	1.801e^-4	1	INTRON Doa
2L	10043927	2L_10043927_INS [dm3] 2L_10043927_INS [dm6]	A	ATTCTACCA	1.812e^-4	1	INTERGENIC
3R	22722583	3R_22722583_SNP [dm3] 3R_26896861_SNP [dm6]	G	A	1.814e^-4	1	INTRON T48	regulatory region REDfly_CRMs
3R	18148335	3R_18148335_SNP [dm3] 3R_22322613_SNP [dm6]	C	T	1.826e^-4	1	INTRON CG34377
2R	17572986	2R_17572986_SNP [dm3] 2R_21685481_SNP [dm6]	T	A	1.832e^-4	1	DOWNSTREAM CG30263 & 1 other INTRON CG10306	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	7631221	2L_7631221_SNP [dm3] 2L_7631221_SNP [dm6]	T	G	1.834e^-4	1	INTERGENIC
2L	4330106	2L_4330106_SNP [dm3] 2L_4330106_SNP [dm6]	A	T	1.836e^-4	1	INTRON CG16857
2R	15702172	2R_15702172_SNP [dm3] 2R_19814667_SNP [dm6]	A	G	1.844e^-4	1	UPSTREAM Obp56h INTERGENIC	regulatory region REDfly_CRMs
3R	18159564	3R_18159564_SNP [dm3] 3R_22333842_SNP [dm6]	T	A	1.844e^-4	1	DOWNSTREAM CG5388 INTRON CG5391
X	9510691	X_9510691_SNP [dm3] X_9616658_SNP [dm6]	C	T	1.846e^-4	1	INTRON CG42797
2L	2307072	2L_2307072_SNP [dm3] 2L_2307072_SNP [dm6]	G	C	1.850e^-4	1	UPSTREAM CG16995 INTERGENIC
3R	26617801	3R_26617801_SNP [dm3] 3R_30792079_SNP [dm6]	G	A	1.867e^-4	1	SYNONYMOUS_CODING wts UPSTREAM mir-1013	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22853096	3R_22853096_SNP [dm3] 3R_27027374_SNP [dm6]	A	C	1.873e^-4	1	INTRON RYa-R
3L	13204650	3L_13204650_SNP [dm3] 3L_13211550_SNP [dm6]	T	A	1.874e^-4	1	UPSTREAM tRNA:CR32128 & 1 other DOWNSTREAM tRNA:CR32129 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14340571	2L_14340571_SNP [dm3] 2L_14340571_SNP [dm6]	C	T	1.881e^-4	1	DOWNSTREAM CG15286 INTRON CG33090
X	3359611	X_3359611_SNP [dm3] X_3465578_SNP [dm6]	T	C	1.882e^-4	1	DOWNSTREAM CG12206 INTRON CR44999	transposable element FlyBase
2L	11588833	2L_11588833_SNP [dm3] 2L_11588833_SNP [dm6]	G	A	1.883e^-4	1	INTRON kek2 EXON CR44496
2L	7533934	2L_7533934_SNP [dm3] 2L_7533934_SNP [dm6]	C	G	1.890e^-4	1	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	2949201	X_2949201_SNP [dm3] X_3055168_SNP [dm6]	A	T	1.895e^-4	1	INTRON kirre
2R	19119570	2R_19119570_SNP [dm3] 2R_23232047_SNP [dm6]	T	G	1.906e^-4	1	UPSTREAM CG3092 INTERGENIC	TF binding site mE1_TFBS_cnc
3R	9920700	3R_9920700_SNP [dm3] 3R_14094978_SNP [dm6]	A	T	1.909e^-4	1	INTRON CCHa1
3L	12601510	3L_12601510_SNP [dm3] 3L_12608410_SNP [dm6]	G	A	1.920e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15711997	3L_15711997_SNP [dm3] 3L_15718897_SNP [dm6]	T	C	1.928e^-4	1	SYNONYMOUS_CODING CG42570
2L	2147510	2L_2147510_INS [dm3] 2L_2147510_INS [dm6]	A	AACTGA	1.930e^-4	1	UPSTREAM CG7261 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	18148552	3R_18148552_SNP [dm3] 3R_22322830_SNP [dm6]	A	G	1.946e^-4	1	INTRON CG34377
3R	18154274	3R_18154274_SNP [dm3] 3R_22328552_SNP [dm6]	A	G	1.952e^-4	1	UPSTREAM CG7080 INTERGENIC
2L	13568320	2L_13568320_SNP [dm3] 2L_13568320_SNP [dm6]	T	C	1.961e^-4	1	INTRON kuz
X	2949168	X_2949168_SNP [dm3] X_3055135_SNP [dm6]	A	C	1.976e^-4	1	INTRON kirre
X	12833599	X_12833599_SNP [dm3] X_12939566_SNP [dm6]	T	G	1.976e^-4	1	INTRON fne	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	5745575	2L_5745575_DEL [dm3] 2L_5745575_DEL [dm6]	GGCGGCA	G	1.988e^-4	1	UPSTREAM CG11029 INTRON CG11030
X	12303907	X_12303907_SNP [dm3] X_12409874_SNP [dm6]	T	A	1.992e^-4	1	DOWNSTREAM CG2574 INTERGENIC
3L	18080652	3L_18080652_SNP [dm3] 3L_18087552_SNP [dm6]	C	T	1.992e^-4	1	UPSTREAM CR32194 & 1 other DOWNSTREAM CG13698 INTERGENIC
3L	10422033	3L_10422033_SNP [dm3] 3L_10428933_SNP [dm6]	T	A	1.994e^-4	1	DOWNSTREAM Ir67b INTERGENIC
2L	15348561	2L_15348561_SNP [dm3] 2L_15348561_SNP [dm6]	T	G	1.998e^-4	1	INTERGENIC
2L	4330130	2L_4330130_SNP [dm3] 2L_4330130_SNP [dm6]	C	A	2.001e^-4	1	INTRON CG16857
3R	18161192	3R_18161192_SNP [dm3] 3R_22335470_SNP [dm6]	G	T	2.013e^-4	1	INTRON CG5388
2R	16678483	2R_16678483_SNP [dm3] 2R_20790978_SNP [dm6]	G	A	2.033e^-4	1	SYNONYMOUS_CODING CG43677 UPSTREAM CG43667 DOWNSTREAM CG43668
2L	14326851	2L_14326851_SNP [dm3] 2L_14326851_SNP [dm6]	T	G	2.034e^-4	1	SYNONYMOUS_CODING wb DOWNSTREAM wb
X	3615291	X_3615291_SNP [dm3] X_3721258_SNP [dm6]	A	G	2.044e^-4	1	INTRON tlk	TF binding site BDTNP1_TFBS_dl
2L	1156477	2L_1156477_SNP [dm3] 2L_1156477_SNP [dm6]	C	A	2.059e^-4	1	UPSTREAM capt INTRON capt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens mE1_TFBS_Trl
3R	7832474	3R_7832474_SNP [dm3] 3R_12006752_SNP [dm6]	C	T	2.062e^-4	1	DOWNSTREAM KLHL18 INTERGENIC
X	12496556	X_12496556_DEL [dm3] X_12602523_DEL [dm6]	TGAAGAATGTGCTT...	T	2.069e^-4	1	INTRON Sec16	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	19301628	2R_19301628_SNP [dm3] 2R_23414105_SNP [dm6]	G	A	2.069e^-4	1	INTRON CG9812
X	17155874	X_17155874_SNP [dm3] X_17261841_SNP [dm6]	A	T	2.070e^-4	1	UPSTREAM f INTRON f
2L	7927202	2L_7927202_SNP [dm3] 2L_7927202_SNP [dm6]	A	G	2.073e^-4	1	INTRON Snoo
X	14846272	X_14846272_DEL [dm3] X_14952239_DEL [dm6]	TT	T	2.091e^-4	1	UPSTREAM pdgy DOWNSTREAM CR44831 INTRON pdgy	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	5504195	3L_5504195_SNP [dm3] 3L_5511095_SNP [dm6]	A	G	2.093e^-4	1	UPSTREAM CG34342 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	11421314	3R_11421314_DEL [dm3] 3R_15595592_DEL [dm6]	AACC	A	2.098e^-4	1	INTERGENIC
3L	16142867	3L_16142867_SNP [dm3] 3L_16149767_SNP [dm6]	A	G	2.106e^-4	1	UPSTREAM CG5151 INTRON CG5151	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2292315	2L_2292315_SNP [dm3] 2L_2292315_SNP [dm6]	A	G	2.107e^-4	1	INTERGENIC
2L	10205365	2L_10205365_SNP [dm3] 2L_10205365_SNP [dm6]	A	T	2.107e^-4	1	UTR_3_PRIME CG5734	TF binding site mE1_TFBS_cad
2R	19409881	2R_19409881_SNP [dm3] 2R_23522358_SNP [dm6]	C	G	2.113e^-4	1	INTRON RabX1	TF binding site BDTNP1_TFBS_dl
2R	10866938	2R_10866938_SNP [dm3] 2R_14979433_SNP [dm6]	A	G	2.115e^-4	1	SYNONYMOUS_CODING ckn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
2L	12372915	2L_12372915_SNP [dm3] 2L_12372915_SNP [dm6]	T	G	2.133e^-4	1	INTRON bru-2
2R	18593208	2R_18593208_SNP [dm3] 2R_22705703_SNP [dm6]	C	T	2.140e^-4	1	DOWNSTREAM Obp58c & 1 other INTERGENIC
2R	10945389	2R_10945389_SNP [dm3] 2R_15057884_SNP [dm6]	A	C	2.144e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	9636452	X_9636452_SNP [dm3] X_9742419_SNP [dm6]	T	C	2.179e^-4	1	INTRON Sp1
2R	17016682	2R_17016682_SNP [dm3] 2R_21129177_SNP [dm6]	C	T	2.181e^-4	1	SYNONYMOUS_CODING mago UPSTREAM CG4050 DOWNSTREAM Magi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	9055718	3L_9055718_SNP [dm3] 3L_9062618_SNP [dm6]	G	A	2.183e^-4	1	INTRON Argk
2R	5981837	2R_5981837_SNP [dm3] 2R_10094332_SNP [dm6]	G	A	2.184e^-4	1	SYNONYMOUS_CODING CG2269	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	17522688	3R_17522688_SNP [dm3] 3R_21696966_SNP [dm6]	G	A	2.189e^-4	1	INTRON CG31176
2R	15601013	2R_15601013_SNP [dm3] 2R_19713508_SNP [dm6]	A	T	2.190e^-4	1	UPSTREAM CR44509 & 1 other DOWNSTREAM Obp56e INTRON Obp56f
3L	16431551	3L_16431551_SNP [dm3] 3L_16438451_SNP [dm6]	A	G	2.194e^-4	1	INTRON CG33158 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13992112	3L_13992112_SNP [dm3] 3L_13999012_SNP [dm6]	C	T	2.197e^-4	1	SYNONYMOUS_CODING CG17359 DOWNSTREAM CG17361 & 1 other	TF binding site mE1_TFBS_sens
2L	15348474	2L_15348474_SNP [dm3] 2L_15348474_SNP [dm6]	T	G	2.201e^-4	1	INTERGENIC
3L	7658811	3L_7658811_SNP [dm3] 3L_7665711_SNP [dm6]	C	T	2.204e^-4	1	NON_SYNONYMOUS_CODING CG44195 UTR_3_PRIME Ank2 INTRON CG32373 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	24495726	3R_24495726_SNP [dm3] 3R_28670004_SNP [dm6]	C	T	2.215e^-4	1	SYNONYMOUS_CODING CG33346 UPSTREAM CG9989
3L	4725662	3L_4725662_DEL [dm3] 3L_4725662_DEL [dm6]	TTAATATAAT	T	2.223e^-4	1	INTRON RhoGEF64C	TF binding site mE1_TFBS_HSA
3L	18080618	3L_18080618_SNP [dm3] 3L_18087518_SNP [dm6]	A	T	2.224e^-4	1	UPSTREAM CR32194 & 1 other DOWNSTREAM CG13698 INTERGENIC
3R	18151449	3R_18151449_SNP [dm3] 3R_22325727_SNP [dm6]	G	T	2.230e^-4	1	INTERGENIC
2R	14471190	2R_14471190_SNP [dm3] 2R_18583685_SNP [dm6]	C	T	2.231e^-4	1	UPSTREAM GEFmeso INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	5265642	3L_5265642_SNP [dm3] 3L_5272542_SNP [dm6]	T	G	2.239e^-4	1	UTR_5_PRIME shep INTRON shep
2R	9523338	2R_9523338_SNP [dm3] 2R_13635833_SNP [dm6]	G	A	2.244e^-4	1	INTRON fas
2L	9240010	2L_9240010_SNP [dm3] 2L_9240010_SNP [dm6]	C	T	2.255e^-4	1	SYNONYMOUS_CODING tai	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17140024	2R_17140024_SNP [dm3] 2R_21252519_SNP [dm6]	G	T	2.261e^-4	1	INTERGENIC	TF binding site mE1_TFBS_bab1
3L	10614234	3L_10614234_SNP [dm3] 3L_10621134_SNP [dm6]	C	T	2.261e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	21895115	X_21895115_SNP [dm3] X_22493279_SNP [dm6]	T	C	2.268e^-4	1	INTRON l_1_G0196
3L	13307729	3L_13307729_SNP [dm3] 3L_13314629_SNP [dm6]	C	G	2.276e^-4	1	INTERGENIC
X	3615272	X_3615272_SNP [dm3] X_3721239_SNP [dm6]	T	C	2.278e^-4	1	INTRON tlk	TF binding site BDTNP1_TFBS_dl
2R	11286523	2R_11286523_SNP [dm3] 2R_15399018_SNP [dm6]	A	C	2.278e^-4	1	INTERGENIC
3R	17949245	3R_17949245_INS [dm3] 3R_22123523_INS [dm6]	T	TTCT	2.287e^-4	1	INTRON CG42390
3R	17632668	3R_17632668_SNP [dm3] 3R_21806946_SNP [dm6]	T	C	2.301e^-4	1	INTRON CASK
X	12225147	X_12225147_SNP [dm3] X_12331114_SNP [dm6]	A	T	2.310e^-4	1	SYNONYMOUS_CODING Ten-a	TF binding site mE1_TFBS_chinmo
X	2347866	X_2347866_SNP [dm3] X_2453833_SNP [dm6]	T	G	2.317e^-4	1	INTRON boi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17760484	2L_17760484_SNP [dm3] 2L_17760484_SNP [dm6]	T	C	2.320e^-4	1	INTRON CadN
X	3365854	X_3365854_DEL [dm3] X_3471821_DEL [dm6]	CAAAC	C	2.337e^-4	1	INTRON CR44999 & 1 other
3R	19413423	3R_19413423_SNP [dm3] 3R_23587701_SNP [dm6]	G	A	2.342e^-4	1	SYNONYMOUS_CODING CG10182
2L	968988	2L_968988_INS [dm3] 2L_968988_INS [dm6]	A	AT	2.347e^-4	1	INTERGENIC
3R	20663237	3R_20663237_SNP [dm3] 3R_24837515_SNP [dm6]	T	C	2.353e^-4	1	INTRON sosie
3L	7581960	3L_7581960_SNP [dm3] 3L_7588860_SNP [dm6]	A	G	2.361e^-4	1	SYNONYMOUS_CODING CG7716
3L	6616698	3L_6616698_SNP [dm3] 3L_6623598_SNP [dm6]	G	A	2.375e^-4	1	UPSTREAM GluRIA INTERGENIC	TF binding site mE1_TFBS_Trl
X	20751403	X_20751403_SNP [dm3] X_20880376_SNP [dm6]	A	G	2.383e^-4	1	INTRON shakB	transposable element FlyBase
3R	11634069	3R_11634069_SNP [dm3] 3R_15808347_SNP [dm6]	A	G	2.384e^-4	1	INTRON alpha-Man-IIb
3R	7836671	3R_7836671_SNP [dm3] 3R_12010949_SNP [dm6]	A	G	2.391e^-4	1	NON_SYNONYMOUS_CODING GCC185 UPSTREAM KLHL18	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	17931320	3R_17931320_SNP [dm3] 3R_22105598_SNP [dm6]	A	T	2.399e^-4	1	DOWNSTREAM CG13407 INTRON CG5778
3L	1923242	3L_1923242_SNP [dm3] 3L_1923242_SNP [dm6]	C	A	2.413e^-4	1	INTRON Dbx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9601975	X_9601975_DEL [dm3] X_9707942_DEL [dm6]	CC	C	2.423e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cnc
3R	14429995	3R_14429995_SNP [dm3] 3R_18604273_SNP [dm6]	G	T	2.428e^-4	1	INTRON qin & 1 other
3L	7128656	3L_7128656_SNP [dm3] 3L_7135556_SNP [dm6]	A	T	2.432e^-4	1	INTRON melt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	18403991	2L_18403991_DEL [dm3] 2L_18403991_DEL [dm6]	GGGAAACTGG	G	2.432e^-4	1	EXON CR44487
2R	16086924	2R_16086924_SNP [dm3] 2R_20199419_SNP [dm6]	T	G	2.439e^-4	1	INTERGENIC
2L	292759	2L_292759_SNP [dm3] 2L_292759_SNP [dm6]	A	G	2.447e^-4	1	SYNONYMOUS_CODING CG11562 UPSTREAM CG3625 DOWNSTREAM U2af38	TF binding site mE1_TFBS_sens
2L	17186236	2L_17186236_SNP [dm3] 2L_17186236_SNP [dm6]	A	T	2.459e^-4	1	INTERGENIC
2L	9234363	2L_9234363_SNP [dm3] 2L_9234363_SNP [dm6]	A	G	2.462e^-4	1	SYNONYMOUS_CODING tai	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	12720351	X_12720351_INS [dm3] X_12826318_INS [dm6]	C	CGCCCCTGGATTTCTAGAGC...	2.464e^-4	1	INTRON Pde9
2L	10220660	2L_10220660_SNP [dm3] 2L_10220660_SNP [dm6]	G	A	2.470e^-4	1	UTR_5_PRIME Npc1a UPSTREAM Prosalpha6 INTRON Npc1a	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	15818157	2L_15818157_SNP [dm3] 2L_15818157_SNP [dm6]	G	T	2.472e^-4	1	INTERGENIC
2L	14563051	2L_14563051_SNP [dm3] 2L_14563051_SNP [dm6]	C	T	2.490e^-4	1	UTR_3_PRIME CG3473 DOWNSTREAM CG3473	TF binding site mE1_TFBS_sens
3R	24730049	3R_24730049_SNP [dm3] 3R_28904327_SNP [dm6]	A	T	2.490e^-4	1	INTRON Doa
3L	7578746	3L_7578746_SNP [dm3] 3L_7585646_SNP [dm6]	C	G	2.501e^-4	1	SYNONYMOUS_CODING CG14838	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1314974	2L_1314974_SNP [dm3] 2L_1314974_SNP [dm6]	A	T	2.501e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	12379598	X_12379598_SNP [dm3] X_12485565_SNP [dm6]	A	T	2.520e^-4	1	INTERGENIC
3R	4925223	3R_4925223_DEL [dm3] 3R_9099501_DEL [dm6]	AAATATGGTTTTAAACTCT...	A	2.521e^-4	1	INTRON pum
3R	7766736	3R_7766736_SNP [dm3] 3R_11941014_SNP [dm6]	A	C	2.532e^-4	1	INTRON Cad87A
2L	15818184	2L_15818184_SNP [dm3] 2L_15818184_SNP [dm6]	A	T	2.533e^-4	1	INTERGENIC
2L	5459892	2L_5459892_SNP [dm3] 2L_5459892_SNP [dm6]	C	T	2.535e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	20663014	3R_20663014_SNP [dm3] 3R_24837292_SNP [dm6]	A	T	2.545e^-4	1	INTRON sosie
3L	5992650	3L_5992650_SNP [dm3] 3L_5999550_SNP [dm6]	T	A	2.562e^-4	1	INTRON PVRAP
2L	7927190	2L_7927190_DEL [dm3] 2L_7927190_DEL [dm6]	TG	A	2.570e^-4	1	INTRON Snoo
X	2881856	X_2881856_SNP [dm3] X_2987823_SNP [dm6]	T	C	2.572e^-4	1	INTRON kirre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3618018	2L_3618018_SNP [dm3] 2L_3618018_SNP [dm6]	C	G	2.573e^-4	1	DOWNSTREAM CR44310 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	12854601	3L_12854601_SNP [dm3] 3L_12861501_SNP [dm6]	T	A	2.576e^-4	1	UPSTREAM CG32107 DOWNSTREAM CG10943 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	10422181	3L_10422181_SNP [dm3] 3L_10429081_SNP [dm6]	C	A	2.577e^-4	1	DOWNSTREAM Ir67b INTERGENIC
X	10814748	X_10814748_SNP [dm3] X_10920715_SNP [dm6]	T	C	2.578e^-4	1	UTR_3_PRIME CG43901	TF binding site BDTNP1_TFBS_dl
3R	19358636	3R_19358636_SNP [dm3] 3R_23532914_SNP [dm6]	T	C	2.580e^-4	1	DOWNSTREAM CG10170 INTERGENIC
3R	23201564	3R_23201564_SNP [dm3] 3R_27375842_SNP [dm6]	G	T	2.597e^-4	1	UTR_3_PRIME side
2L	1033533	2L_1033533_SNP [dm3] 2L_1033533_SNP [dm6]	G	C	2.599e^-4	1	INTRON IA-2
2R	19410464	2R_19410464_SNP [dm3] 2R_23522941_SNP [dm6]	G	T	2.628e^-4	1	UPSTREAM mi INTRON RabX1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	7575956	2L_7575956_SNP [dm3] 2L_7575956_SNP [dm6]	C	G	2.629e^-4	1	UTR_5_PRIME RapGAP1 INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12964594	2R_12964594_SNP [dm3] 2R_17077089_SNP [dm6]	T	A	2.630e^-4	1	UPSTREAM CG30460 INTRON CG30460
X	9676404	X_9676404_SNP [dm3] X_9782371_SNP [dm6]	C	G	2.632e^-4	1	UPSTREAM CG32698 DOWNSTREAM CG1354 INTERGENIC
3L	17813443	3L_17813443_SNP [dm3] 3L_17820343_SNP [dm6]	A	G	2.667e^-4	1	UPSTREAM Ir75b DOWNSTREAM Ir75c INTERGENIC
2L	10011711	2L_10011711_SNP [dm3] 2L_10011711_SNP [dm6]	C	A	2.668e^-4	1	SYNONYMOUS_CODING Trp1
3R	25790091	3R_25790091_SNP [dm3] 3R_29964369_SNP [dm6]	C	T	2.669e^-4	1	INTRON TkR99D
2L	995897	2L_995897_SNP [dm3] 2L_995897_SNP [dm6]	A	G	2.670e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	18157915	3R_18157915_SNP [dm3] 3R_22332193_SNP [dm6]	G	T	2.671e^-4	1	NON_SYNONYMOUS_CODING CG13862 DOWNSTREAM CG33721 & 1 other	TF binding site mE1_TFBS_inv
3L	5367374	3L_5367374_DEL [dm3] 3L_5374274_DEL [dm6]	CGGAAAACC	C	2.671e^-4	1	INTERGENIC
2R	13179202	2R_13179202_SNP [dm3] 2R_17291697_SNP [dm6]	C	T	2.686e^-4	1	INTRON mbl
3L	7100881	3L_7100881_INS [dm3] 3L_7107781_INS [dm6]	C	CC	2.692e^-4	1	INTRON form3	TF binding site mE1_TFBS_inv
2L	7927200	2L_7927200_SNP [dm3] 2L_7927200_SNP [dm6]	T	C	2.705e^-4	1	INTRON Snoo
X	12380426	X_12380426_SNP [dm3] X_12486393_SNP [dm6]	C	T	2.713e^-4	1	UPSTREAM Cpr11A INTERGENIC
2L	4330099	2L_4330099_DEL [dm3] 2L_4330099_DEL [dm6]	AA	A	2.730e^-4	1	INTRON CG16857
3R	18824653	3R_18824653_DEL [dm3] 3R_22998931_DEL [dm6]	GG	G	2.731e^-4	1	UPSTREAM Nha2 INTERGENIC
3L	9316765	3L_9316765_SNP [dm3] 3L_9323665_SNP [dm6]	A	T	2.731e^-4	1	INTERGENIC
2L	5238833	2L_5238833_SNP [dm3] 2L_5238833_SNP [dm6]	C	T	2.733e^-4	1	INTRON tkv	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
2R	17016515	2R_17016515_SNP [dm3] 2R_21129010_SNP [dm6]	C	T	2.735e^-4	1	UPSTREAM CG4050 DOWNSTREAM Magi INTRON mago	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	21278876	3L_21278876_SNP [dm3] 3L_21285776_SNP [dm6]	T	G	2.747e^-4	1	UPSTREAM pzg & 1 other INTRON CG12974	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	24578784	3R_24578784_SNP [dm3] 3R_28753062_SNP [dm6]	G	A	2.756e^-4	1	INTERGENIC
2L	3756098	2L_3756098_DEL [dm3] 2L_3756098_DEL [dm6]	AATT	A	2.756e^-4	1	INTERGENIC
2L	7927182	2L_7927182_SNP [dm3] 2L_7927182_SNP [dm6]	A	T	2.762e^-4	1	INTRON Snoo
2L	11032675	2L_11032675_SNP [dm3] 2L_11032675_SNP [dm6]	C	A	2.778e^-4	1	INTRON Samuel
3R	21595040	3R_21595040_SNP [dm3] 3R_25769318_SNP [dm6]	A	G	2.791e^-4	1	INTERGENIC
3R	10442012	3R_10442012_SNP [dm3] 3R_14616290_SNP [dm6]	T	G	2.793e^-4	1	INTRON CG14853
2R	17907509	2R_17907509_SNP [dm3] 2R_22020004_SNP [dm6]	T	C	2.799e^-4	1	INTRON CG34370
X	21902449	X_21902449_SNP [dm3] X_22500613_SNP [dm6]	G	A	2.806e^-4	1	INTRON l_1_G0196	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2615755	3L_2615755_SNP [dm3] 3L_2615755_SNP [dm6]	G	A	2.808e^-4	1	INTRON Pxn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18186713	3R_18186713_SNP [dm3] 3R_22360991_SNP [dm6]	G	T	2.814e^-4	1	SYNONYMOUS_CODING PSR UTR_3_PRIME PSR DOWNSTREAM Sar1	TF binding site mE1_TFBS_chinmo
2R	19297860	2R_19297860_SNP [dm3] 2R_23410337_SNP [dm6]	C	T	2.826e^-4	1	INTERGENIC
X	6520360	X_6520360_SNP [dm3] X_6626327_SNP [dm6]	T	A	2.835e^-4	1	INTRON pigs
3L	18677341	3L_18677341_SNP [dm3] 3L_18684241_SNP [dm6]	T	G	2.836e^-4	1	UPSTREAM Chmp1 DOWNSTREAM Cyp12c1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	4893888	3R_4893888_SNP [dm3] 3R_9068166_SNP [dm6]	T	A	2.841e^-4	1	UTR_3_PRIME pum	TF binding site mE1_TFBS_D
3R	11345877	3R_11345877_SNP [dm3] 3R_15520155_SNP [dm6]	T	C	2.848e^-4	1	INTERGENIC
X	15096156	X_15096156_SNP [dm3] X_15202123_SNP [dm6]	G	A	2.856e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
2L	4267642	2L_4267642_SNP [dm3] 2L_4267642_SNP [dm6]	C	T	2.874e^-4	1	INTERGENIC
3R	10030960	3R_10030960_DEL [dm3] 3R_14205238_DEL [dm6]	GCGG	G	2.878e^-4	1	INTRON Dop1R1
2R	2633374	2R_2633374_SNP [dm3] 2R_6745869_SNP [dm6]	C	A	2.878e^-4	1	UTR_3_PRIME phtf UPSTREAM CG3267	TF binding site BDTNP1_TFBS_twi
2R	18039710	2R_18039710_SNP [dm3] 2R_22152205_SNP [dm6]	G	T	2.880e^-4	1	INTRON a
2L	17176174	2L_17176174_SNP [dm3] 2L_17176174_SNP [dm6]	A	C	2.880e^-4	1	UPSTREAM Gr36a INTRON CR44394
2R	17016019	2R_17016019_SNP [dm3] 2R_21128514_SNP [dm6]	T	G	2.882e^-4	1	UPSTREAM mago & 1 other DOWNSTREAM Magi INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11266741	2R_11266741_SNP [dm3] 2R_15379236_SNP [dm6]	T	A	2.886e^-4	1	INTRON dup	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	11421171	3R_11421171_SNP [dm3] 3R_15595449_SNP [dm6]	T	G	2.898e^-4	1	INTERGENIC
2L	1442859	2L_1442859_SNP [dm3] 2L_1442859_SNP [dm6]	G	A	2.899e^-4	1	NON_SYNONYMOUS_CODING CG43402
2R	14506213	2R_14506213_SNP [dm3] 2R_18618708_SNP [dm6]	T	G	2.899e^-4	1	UPSTREAM CG5493 DOWNSTREAM CG5327 INTRON CG5493	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	5712847	2L_5712847_SNP [dm3] 2L_5712847_SNP [dm6]	C	T	2.901e^-4	1	SYNONYMOUS_CODING CG7236	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19340262	2R_19340262_SNP [dm3] 2R_23452739_SNP [dm6]	T	C	2.902e^-4	1	INTRON CG43795
2R	8639568	2R_8639568_SNP [dm3] 2R_12752063_SNP [dm6]	C	T	2.913e^-4	1	SYNONYMOUS_CODING mos DOWNSTREAM CG42663 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3755941	2L_3755941_INS [dm3] 2L_3755941_INS [dm6]	C	CT	2.914e^-4	1	INTERGENIC
3L	15140119	3L_15140119_SNP [dm3] 3L_15147019_SNP [dm6]	C	T	2.915e^-4	1	UPSTREAM FucTA DOWNSTREAM Pex3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	1400394	3L_1400394_SNP [dm3] 3L_1400394_SNP [dm6]	A	G	2.929e^-4	1	INTRON Ptp61F & 1 other
2R	18303080	2R_18303080_SNP [dm3] 2R_22415575_SNP [dm6]	C	A	2.930e^-4	1	UTR_5_PRIME qkr58E-2 UPSTREAM qkr58E-2 & 1 other DOWNSTREAM CR45152	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3L	4985113	3L_4985113_SNP [dm3] 3L_4985113_SNP [dm6]	A	G	2.937e^-4	1	INTRON Con
2R	18869658	2R_18869658_SNP [dm3] 2R_22982135_SNP [dm6]	A	G	2.941e^-4	1	DOWNSTREAM CG32834 INTERGENIC
2L	5117876	2L_5117876_SNP [dm3] 2L_5117876_SNP [dm6]	C	T	2.949e^-4	1	INTRON Msp300
2R	13179432	2R_13179432_SNP [dm3] 2R_17291927_SNP [dm6]	G	C	2.961e^-4	1	INTRON mbl
2L	10937240	2L_10937240_INS [dm3] 2L_10937240_INS [dm6]	G	GTACTACATATGT...	2.963e^-4	1	SPLICE_SITE_REGION CG14072 UPSTREAM CG14072 INTRON dpr2 & 1 other
2R	13052882	2R_13052882_SNP [dm3] 2R_17165377_SNP [dm6]	C	T	2.963e^-4	1	UTR_3_PRIME CG10953 DOWNSTREAM CG10953
3L	18603953	3L_18603953_SNP [dm3] 3L_18610853_SNP [dm6]	G	T	2.964e^-4	1	NON_SYNONYMOUS_CODING CG32201 INTRON CG4174 & 1 other
2L	1432126	2L_1432126_SNP [dm3] 2L_1432126_SNP [dm6]	T	A	2.983e^-4	1	UPSTREAM snRNA:U3:22A INTERGENIC	TF binding site mE1_TFBS_cad
3L	2544390	3L_2544390_SNP [dm3] 3L_2544390_SNP [dm6]	C	A	2.983e^-4	1	INTRON Spn
3R	18151581	3R_18151581_SNP [dm3] 3R_22325859_SNP [dm6]	A	G	2.984e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	12379236	X_12379236_SNP [dm3] X_12485203_SNP [dm6]	A	C	2.984e^-4	1	INTERGENIC
X	14039339	X_14039339_SNP [dm3] X_14145306_SNP [dm6]	C	T	2.997e^-4	1	INTERGENIC
2R	18104636	2R_18104636_SNP [dm3] 2R_22217131_SNP [dm6]	T	C	2.997e^-4	1	UTR_3_PRIME ari-2 DOWNSTREAM CG30278	TF binding site BDTNP1_TFBS_z
2R	19299599	2R_19299599_SNP [dm3] 2R_23412076_SNP [dm6]	G	C	3.008e^-4	1	DOWNSTREAM CG9812 INTERGENIC
2R	17487334	2R_17487334_SNP [dm3] 2R_21599829_SNP [dm6]	G	T	3.010e^-4	1	INTERGENIC
3L	2528240	3L_2528240_SNP [dm3] 3L_2528240_SNP [dm6]	T	C	3.014e^-4	1	INTRON Spn
2L	1944484	2L_1944484_SNP [dm3] 2L_1944484_SNP [dm6]	G	T	3.016e^-4	1	DOWNSTREAM CG7337 & 1 other INTERGENIC
3L	19563314	3L_19563314_SNP [dm3] 3L_19570214_SNP [dm6]	G	T	3.022e^-4	1	INTRON Shal	TF binding site mE1_TFBS_cad
2R	12543038	2R_12543038_SNP [dm3] 2R_16655533_SNP [dm6]	T	C	3.034e^-4	1	UTR_3_PRIME Picot UPSTREAM Nach
2R	12481224	2R_12481224_DEL [dm3] 2R_16593719_DEL [dm6]	GATCCA	G	3.039e^-4	1	INTRON CG8306	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	17521705	3R_17521705_SNP [dm3] 3R_21695983_SNP [dm6]	T	C	3.039e^-4	1	INTRON CG31176
3R	10003948	3R_10003948_SNP [dm3] 3R_14178226_SNP [dm6]	G	A	3.045e^-4	1	SYNONYMOUS_CODING Dop1R1
2L	14930172	2L_14930172_SNP [dm3] 2L_14930172_SNP [dm6]	G	A	3.060e^-4	1	SYNONYMOUS_CODING CG3491 INTRON CG42313
3L	17830164	3L_17830164_SNP [dm3] 3L_17837064_SNP [dm6]	A	T	3.060e^-4	1	INTRON Grd	TF binding site BDTNP1_TFBS_da
2L	7369728	2L_7369728_SNP [dm3] 2L_7369728_SNP [dm6]	G	T	3.065e^-4	1	INTRON Wnt10 EXON CR44063
X	21894778	X_21894778_SNP [dm3] X_22492942_SNP [dm6]	A	C	3.075e^-4	1	INTRON l_1_G0196	transposable element FlyBase
3R	15135377	3R_15135377_SNP [dm3] 3R_19309655_SNP [dm6]	C	G	3.081e^-4	1	INTRON Dl
2L	9881399	2L_9881399_SNP [dm3] 2L_9881399_SNP [dm6]	T	C	3.104e^-4	1	INTRON nAChRalpha6
2L	6110714	2L_6110714_SNP [dm3] 2L_6110714_SNP [dm6]	C	A	3.105e^-4	1	INTRON stai
2R	10868635	2R_10868635_SNP [dm3] 2R_14981130_SNP [dm6]	T	C	3.119e^-4	1	UPSTREAM pcs DOWNSTREAM ckn INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Ubx
3R	10192223	3R_10192223_SNP [dm3] 3R_14366501_SNP [dm6]	G	T	3.122e^-4	1	INTRON NK7.1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc
2R	19119464	2R_19119464_SNP [dm3] 2R_23231941_SNP [dm6]	G	A	3.145e^-4	1	UPSTREAM CG3092 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_cnc
X	10710362	X_10710362_SNP [dm3] X_10816329_SNP [dm6]	A	G	3.152e^-4	1	UPSTREAM Imp INTRON Imp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_HSA
X	8274306	X_8274306_SNP [dm3] X_8380273_SNP [dm6]	G	A	3.156e^-4	1	INTERGENIC
X	6454387	X_6454387_SNP [dm3] X_6560354_SNP [dm6]	T	C	3.156e^-4	1	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_inv
X	20751410	X_20751410_SNP [dm3] X_20880383_SNP [dm6]	A	C	3.159e^-4	1	INTRON shakB	transposable element FlyBase
3L	4012210	3L_4012210_SNP [dm3] 3L_4012210_SNP [dm6]	T	A	3.164e^-4	1	INTERGENIC
2R	18845495	2R_18845495_SNP [dm3] 2R_22957972_SNP [dm6]	C	T	3.166e^-4	1	UPSTREAM CR44780 INTERGENIC
2L	14998061	2L_14998061_SNP [dm3] 2L_14998061_SNP [dm6]	G	T	3.174e^-4	1	UPSTREAM mol INTERGENIC
3L	4576588	3L_4576588_SNP [dm3] 3L_4576588_SNP [dm6]	T	A	3.177e^-4	1	INTRON CG42540
2L	1033537	2L_1033537_INS [dm3] 2L_1033537_INS [dm6]	A	ATCG	3.191e^-4	1	INTRON IA-2
X	15555167	X_15555167_SNP [dm3] X_15661134_SNP [dm6]	T	A	3.208e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13072483	2R_13072483_SNP [dm3] 2R_17184978_SNP [dm6]	C	T	3.211e^-4	1	UPSTREAM CR44387 INTERGENIC
3L	7574927	3L_7574927_SNP [dm3] 3L_7581827_SNP [dm6]	T	A	3.214e^-4	1	INTERGENIC
X	15555153	X_15555153_SNP [dm3] X_15661120_SNP [dm6]	T	A	3.225e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	3374402	X_3374402_DEL [dm3] X_3480369_DEL [dm6]	AA	A	3.230e^-4	1	INTRON CR44999 & 1 other	TF binding site mE1_TFBS_cad
2L	11944561	2L_11944561_SNP [dm3] 2L_11944561_SNP [dm6]	C	A	3.233e^-4	1	INTRON Cry
2L	15348613	2L_15348613_SNP [dm3] 2L_15348613_SNP [dm6]	A	T	3.234e^-4	1	INTERGENIC
3L	15660911	3L_15660911_SNP [dm3] 3L_15667811_SNP [dm6]	C	A	3.238e^-4	1	INTERGENIC
2L	11296201	2L_11296201_SNP [dm3] 2L_11296201_SNP [dm6]	G	A	3.250e^-4	1	INTERGENIC
2R	17815829	2R_17815829_SNP [dm3] 2R_21928324_SNP [dm6]	C	T	3.252e^-4	1	INTRON Fili
3L	2781185	3L_2781185_SNP [dm3] 3L_2781185_SNP [dm6]	A	T	3.256e^-4	1	DOWNSTREAM Atg2 INTRON mRpS35	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_ttk
X	6523876	X_6523876_SNP [dm3] X_6629843_SNP [dm6]	A	T	3.263e^-4	1	INTRON pigs
2L	14457306	2L_14457306_SNP [dm3] 2L_14457306_SNP [dm6]	G	A	3.267e^-4	1	EXON CR44730	TF binding site mE1_TFBS_cad
X	5151087	X_5151087_INS [dm3] X_5257054_INS [dm6]	A	ATCTA	3.272e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3244783	2L_3244783_SNP [dm3] 2L_3244783_SNP [dm6]	C	T	3.287e^-4	1	INTERGENIC
2L	7537876	2L_7537876_SNP [dm3] 2L_7537876_SNP [dm6]	T	C	3.289e^-4	1	INTRON RapGAP1	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3R	20731788	3R_20731788_SNP [dm3] 3R_24906066_SNP [dm6]	G	T	3.290e^-4	1	UPSTREAM CG13643 INTERGENIC
3R	25487710	3R_25487710_SNP [dm3] 3R_29661988_SNP [dm6]	G	A	3.302e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7745897	3R_7745897_SNP [dm3] 3R_11920175_SNP [dm6]	G	T	3.315e^-4	1	INTRON Cad87A
2R	18066772	2R_18066772_SNP [dm3] 2R_22179267_SNP [dm6]	G	C	3.315e^-4	1	UPSTREAM CG11170 & 1 other INTRON CG11170	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_Trl
X	17686601	X_17686601_SNP [dm3] X_17792568_SNP [dm6]	G	T	3.330e^-4	1	INTRON OdsH
3R	19358630	3R_19358630_INS [dm3] 3R_23532908_INS [dm6]	A	AA	3.332e^-4	1	DOWNSTREAM CG10170 INTERGENIC
2R	17487486	2R_17487486_SNP [dm3] 2R_21599981_SNP [dm6]	G	A	3.333e^-4	1	INTERGENIC
2L	7523973	2L_7523973_SNP [dm3] 2L_7523973_SNP [dm6]	G	A	3.341e^-4	1	INTRON RapGAP1
3R	21028003	3R_21028003_SNP [dm3] 3R_25202281_SNP [dm6]	T	C	3.353e^-4	1	INTRON CG13654 & 1 other
3R	7851477	3R_7851477_SNP [dm3] 3R_12025755_SNP [dm6]	T	G	3.356e^-4	1	INTERGENIC
2L	22002843	2L_22002843_SNP [dm3] 2L_22002843_SNP [dm6]	T	G	3.360e^-4	1	INTERGENIC
3L	7305732	3L_7305732_SNP [dm3] 3L_7312632_SNP [dm6]	C	A	3.376e^-4	1	INTRON unc-13-4A
2R	19308751	2R_19308751_SNP [dm3] 2R_23421228_SNP [dm6]	A	C	3.380e^-4	1	DOWNSTREAM CG9815 INTERGENIC
3L	4725834	3L_4725834_SNP [dm3] 3L_4725834_SNP [dm6]	T	C	3.382e^-4	1	INTRON RhoGEF64C	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	21629923	3L_21629923_SNP [dm3] 3L_21636823_SNP [dm6]	T	C	3.388e^-4	1	UPSTREAM CG32444 DOWNSTREAM ORMDL INTERGENIC
3R	24637329	3R_24637329_SNP [dm3] 3R_28811607_SNP [dm6]	C	T	3.397e^-4	1	UPSTREAM CG1646 & 2 others INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	11328465	3L_11328465_SNP [dm3] 3L_11335365_SNP [dm6]	G	A	3.400e^-4	1	INTERGENIC
3R	10012472	3R_10012472_SNP [dm3] 3R_14186750_SNP [dm6]	A	T	3.402e^-4	1	INTRON Dop1R1
2R	17487485	2R_17487485_SNP [dm3] 2R_21599980_SNP [dm6]	C	G	3.403e^-4	1	INTERGENIC
2L	4457005	2L_4457005_INS [dm3] 2L_4457005_INS [dm6]	C	CATTT	3.414e^-4	1	UPSTREAM Gs1l DOWNSTREAM RpL27A & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	295068	2L_295068_SNP [dm3] 2L_295068_SNP [dm6]	G	A	3.414e^-4	1	UPSTREAM Hop & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	5203430	3L_5203430_DEL [dm3] 3L_5210330_DEL [dm6]	AA	A	3.414e^-4	1	INTRON shep
3L	18626499	3L_18626499_SNP [dm3] 3L_18633399_SNP [dm6]	T	A	3.417e^-4	1	INTRON MYPT-75D
2L	15818206	2L_15818206_SNP [dm3] 2L_15818206_SNP [dm6]	A	T	3.450e^-4	1	INTERGENIC
3R	18581411	3R_18581411_SNP [dm3] 3R_22755689_SNP [dm6]	T	G	3.456e^-4	1	INTRON Usp12-46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	7851745	3R_7851745_SNP [dm3] 3R_12026023_SNP [dm6]	A	G	3.458e^-4	1	INTERGENIC
3L	11328480	3L_11328480_SNP [dm3] 3L_11335380_SNP [dm6]	C	A	3.462e^-4	1	INTERGENIC
3L	7574940	3L_7574940_SNP [dm3] 3L_7581840_SNP [dm6]	C	T	3.465e^-4	1	INTERGENIC
2R	6243010	2R_6243010_MNP [dm3] 2R_10355505_MNP [dm6]	GAAG	TCGT	3.469e^-4	1	UTR_5_PRIME CG12902 UTR_3_PRIME CG43397 UPSTREAM CG12902 DOWNSTREAM CG42733 INTRON CG42732
3R	4888057	3R_4888057_SNP [dm3] 3R_9062335_SNP [dm6]	G	T	3.478e^-4	1	UTR_3_PRIME Kdm2 DOWNSTREAM beag	TF binding site mE1_TFBS_cad
3L	19173621	3L_19173621_SNP [dm3] 3L_19180521_SNP [dm6]	G	T	3.480e^-4	1	INTRON fz2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1417945	3L_1417945_SNP [dm3] 3L_1417945_SNP [dm6]	C	T	3.481e^-4	1	DOWNSTREAM FucTD INTRON Ptp61F	TF binding site mE1_TFBS_chinmo
X	7584011	X_7584011_SNP [dm3] X_7689978_SNP [dm6]	G	A	3.486e^-4	1	SYNONYMOUS_CODING CHES-1-like	TF binding site mE1_TFBS_chinmo mE1_TFBS_Trl
3R	13345180	3R_13345180_SNP [dm3] 3R_17519458_SNP [dm6]	T	C	3.487e^-4	1	UPSTREAM CR44349 INTERGENIC
2R	6536693	2R_6536693_SNP [dm3] 2R_10649188_SNP [dm6]	C	T	3.488e^-4	1	NON_SYNONYMOUS_CODING CG12934 DOWNSTREAM Elp2
3L	15607630	3L_15607630_SNP [dm3] 3L_15614530_SNP [dm6]	T	A	3.488e^-4	1	INTRON comm3
3R	19321297	3R_19321297_SNP [dm3] 3R_23495575_SNP [dm6]	A	G	3.489e^-4	1	INTERGENIC
3L	17601204	3L_17601204_SNP [dm3] 3L_17608104_SNP [dm6]	A	G	3.489e^-4	1	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	8803863	2L_8803863_SNP [dm3] 2L_8803863_SNP [dm6]	T	C	3.499e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17632571	3R_17632571_SNP [dm3] 3R_21806849_SNP [dm6]	A	G	3.503e^-4	1	INTRON CASK
2L	1178747	2L_1178747_DEL [dm3] 2L_1178747_DEL [dm6]	GATAGTATGCAAACGA...	G	3.520e^-4	1	INTRON CG4896	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7831464	3R_7831464_SNP [dm3] 3R_12005742_SNP [dm6]	C	T	3.528e^-4	1	UPSTREAM Tk INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13615941	3R_13615941_SNP [dm3] 3R_17790219_SNP [dm6]	A	T	3.536e^-4	1	INTRON CG43102
X	3620032	X_3620032_MNP [dm3] X_3725999_MNP [dm6]	GGT	TAA	3.538e^-4	1	INTRON tlk	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	12615445	2R_12615445_SNP [dm3] 2R_16727940_SNP [dm6]	T	G	3.542e^-4	1	INTRON CG30463
3L	9148681	3L_9148681_SNP [dm3] 3L_9155581_SNP [dm6]	G	A	3.546e^-4	1	INTRON Rdl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10220159	2L_10220159_SNP [dm3] 2L_10220159_SNP [dm6]	A	G	3.550e^-4	1	UTR_5_PRIME Npc1a INTRON Npc1a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	10034643	2R_10034643_SNP [dm3] 2R_14147138_SNP [dm6]	A	T	3.554e^-4	1	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	17813949	2R_17813949_SNP [dm3] 2R_21926444_SNP [dm6]	A	G	3.557e^-4	1	INTRON Fili
3R	10441998	3R_10441998_SNP [dm3] 3R_14616276_SNP [dm6]	A	T	3.572e^-4	1	INTRON CG14853
X	6123089	X_6123089_SNP [dm3] X_6229056_SNP [dm6]	C	T	3.583e^-4	1	SYNONYMOUS_CODING CG14446
2R	14193500	2R_14193500_SNP [dm3] 2R_18305995_SNP [dm6]	C	A	3.590e^-4	1	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3L	11328674	3L_11328674_SNP [dm3] 3L_11335574_SNP [dm6]	T	A	3.591e^-4	1	INTERGENIC
3L	8601637	3L_8601637_SNP [dm3] 3L_8608537_SNP [dm6]	T	C	3.594e^-4	1	UTR_5_PRIME CG6282 INTRON CG6282
2R	11815579	2R_11815579_DEL [dm3] 2R_15928074_DEL [dm6]	ATTGGCAA	A	3.600e^-4	1	UTR_5_PRIME bdg INTRON bdg
3R	6157652	3R_6157652_SNP [dm3] 3R_10331930_SNP [dm6]	G	A	3.620e^-4	1	SYNONYMOUS_CODING CG12818 UPSTREAM Bruce	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2R	11627109	2R_11627109_DEL [dm3] 2R_15739604_DEL [dm6]	TGAATCT	T	3.626e^-4	1	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	18824444	3R_18824444_SNP [dm3] 3R_22998722_SNP [dm6]	G	C	3.635e^-4	1	UPSTREAM Nha2 DOWNSTREAM CR43454 INTERGENIC
2L	15348568	2L_15348568_SNP [dm3] 2L_15348568_SNP [dm6]	A	T	3.637e^-4	1	INTERGENIC
X	4299421	X_4299421_SNP [dm3] X_4405388_SNP [dm6]	C	T	3.645e^-4	1	INTRON CR32773
3R	7832513	3R_7832513_SNP [dm3] 3R_12006791_SNP [dm6]	A	C	3.646e^-4	1	DOWNSTREAM KLHL18 INTERGENIC
3L	9316704	3L_9316704_DEL [dm3] 3L_9323604_DEL [dm6]	CATCAAGTGTACGAGTATAT...	C	3.650e^-4	1	INTERGENIC
3L	9316727	3L_9316727_DEL [dm3] 3L_9323627_DEL [dm6]	TCACA	T	3.650e^-4	1	INTERGENIC
2L	3613290	2L_3613290_SNP [dm3] 2L_3613290_SNP [dm6]	A	G	3.669e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	9601974	X_9601974_SNP [dm3] X_9707941_SNP [dm6]	C	G	3.675e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cnc
3R	17723077	3R_17723077_SNP [dm3] 3R_21897355_SNP [dm6]	G	A	3.678e^-4	1	INTRON CG6678
3R	7832503	3R_7832503_SNP [dm3] 3R_12006781_SNP [dm6]	C	T	3.678e^-4	1	DOWNSTREAM KLHL18 INTERGENIC
2R	2450677	2R_2450677_SNP [dm3] 2R_6563172_SNP [dm6]	T	G	3.691e^-4	1	INTRON jing	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5582399	2L_5582399_SNP [dm3] 2L_5582399_SNP [dm6]	C	A	3.700e^-4	1	INTERGENIC
3R	23794728	3R_23794728_SNP [dm3] 3R_27969006_SNP [dm6]	T	C	3.713e^-4	1	SYNONYMOUS_CODING betaTub97EF	TF binding site mE1_TFBS_cad
X	3610736	X_3610736_SNP [dm3] X_3716703_SNP [dm6]	T	A	3.723e^-4	1	INTRON Rala
X	2662762	X_2662762_SNP [dm3] X_2768729_SNP [dm6]	T	A	3.724e^-4	1	INTRON kirre
3R	20663270	3R_20663270_SNP [dm3] 3R_24837548_SNP [dm6]	G	A	3.726e^-4	1	INTRON sosie
2L	11579881	2L_11579881_SNP [dm3] 2L_11579881_SNP [dm6]	A	G	3.731e^-4	1	INTERGENIC
3R	13389796	3R_13389796_SNP [dm3] 3R_17564074_SNP [dm6]	C	T	3.741e^-4	1	INTRON Hmx
2R	14469945	2R_14469945_SNP [dm3] 2R_18582440_SNP [dm6]	T	C	3.756e^-4	1	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	24265714	3R_24265714_SNP [dm3] 3R_28439992_SNP [dm6]	A	G	3.765e^-4	1	INTRON beat-VI
3R	24265720	3R_24265720_SNP [dm3] 3R_28439998_SNP [dm6]	C	T	3.765e^-4	1	INTRON beat-VI
3R	24265859	3R_24265859_DEL [dm3] 3R_28440137_DEL [dm6]	TA	T	3.765e^-4	1	INTRON beat-VI
3R	17713458	3R_17713458_SNP [dm3] 3R_21887736_SNP [dm6]	A	C	3.766e^-4	1	UPSTREAM dnd INTRON CG6678
3R	17949272	3R_17949272_SNP [dm3] 3R_22123550_SNP [dm6]	A	T	3.770e^-4	1	INTRON CG42390
X	7583941	X_7583941_SNP [dm3] X_7689908_SNP [dm6]	G	A	3.783e^-4	1	NON_SYNONYMOUS_CODING CHES-1-like	TF binding site mE1_TFBS_chinmo
3R	18157561	3R_18157561_SNP [dm3] 3R_22331839_SNP [dm6]	A	C	3.787e^-4	1	UPSTREAM CG13862 DOWNSTREAM CG33721 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	17016026	2R_17016026_SNP [dm3] 2R_21128521_SNP [dm6]	T	A	3.789e^-4	1	UPSTREAM mago & 1 other DOWNSTREAM Magi INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	11298642	3R_11298642_SNP [dm3] 3R_15472920_SNP [dm6]	G	A	3.792e^-4	1	INTRON AdamTS-A	TF binding site mE1_TFBS_zfh1
2L	2097794	2L_2097794_SNP [dm3] 2L_2097794_SNP [dm6]	A	T	3.792e^-4	1	INTRON dpr3
3R	5656261	3R_5656261_SNP [dm3] 3R_9830539_SNP [dm6]	A	T	3.792e^-4	1	INTRON Teh1
3L	13863449	3L_13863449_SNP [dm3] 3L_13870349_SNP [dm6]	G	T	3.801e^-4	1	UTR_3_PRIME dysc
2R	11381827	2R_11381827_SNP [dm3] 2R_15494322_SNP [dm6]	A	T	3.803e^-4	1	INTRON CG12964
2R	13049516	2R_13049516_SNP [dm3] 2R_17162011_SNP [dm6]	C	G	3.808e^-4	1	INTERGENIC
X	2662747	X_2662747_SNP [dm3] X_2768714_SNP [dm6]	C	A	3.815e^-4	1	INTRON kirre
2R	12551935	2R_12551935_DEL [dm3] 2R_16664430_DEL [dm6]	ACCCATA	A	3.820e^-4	1	UPSTREAM Picot INTRON Picot	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15662294	3L_15662294_SNP [dm3] 3L_15669194_SNP [dm6]	T	G	3.823e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	24265708	3R_24265708_SNP [dm3] 3R_28439986_SNP [dm6]	C	T	3.826e^-4	1	INTRON beat-VI
3L	12640038	3L_12640038_SNP [dm3] 3L_12646938_SNP [dm6]	C	G	3.827e^-4	1	EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2081486	2L_2081486_SNP [dm3] 2L_2081486_SNP [dm6]	G	A	3.832e^-4	1	UPSTREAM CR44808 DOWNSTREAM CG12674 INTRON dpr3
3L	7584418	3L_7584418_SNP [dm3] 3L_7591318_SNP [dm6]	T	C	3.834e^-4	1	UPSTREAM CG7716 INTERGENIC
X	3613683	X_3613683_SNP [dm3] X_3719650_SNP [dm6]	G	C	3.850e^-4	1	UPSTREAM tlk & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3R	16690538	3R_16690538_SNP [dm3] 3R_20864816_SNP [dm6]	T	A	3.866e^-4	1	INTRON CG3822
X	15096120	X_15096120_SNP [dm3] X_15202087_SNP [dm6]	T	A	3.874e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
3L	9610953	3L_9610953_SNP [dm3] 3L_9617853_SNP [dm6]	T	C	3.875e^-4	1	SYNONYMOUS_CODING LanB2
X	10092080	X_10092080_SNP [dm3] X_10198047_SNP [dm6]	T	A	3.881e^-4	1	INTRON CR44894
2R	2634681	2R_2634681_SNP [dm3] 2R_6747176_SNP [dm6]	G	A	3.896e^-4	1	INTRON CG3267
X	21900812	X_21900812_SNP [dm3] X_22498976_SNP [dm6]	T	C	3.901e^-4	1	UTR_3_PRIME l_1_G0196 INTRON l_1_G0196	TF binding site BDTNP1_TFBS_dl
3R	4821560	3R_4821560_SNP [dm3] 3R_8995838_SNP [dm6]	A	T	3.910e^-4	1	NON_SYNONYMOUS_CODING CG31100 DOWNSTREAM CG11975
2L	6867886	2L_6867886_SNP [dm3] 2L_6867886_SNP [dm6]	A	T	3.912e^-4	1	INTRON Nha1
3R	12554020	3R_12554020_SNP [dm3] 3R_16728298_SNP [dm6]	C	T	3.913e^-4	1	INTRON Ubx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	19858669	X_19858669_SNP [dm3] X_19964636_SNP [dm6]	G	T	3.917e^-4	1	INTRON Nep3	TF binding site mE1_TFBS_chinmo
3R	4806578	3R_4806578_SNP [dm3] 3R_8980856_SNP [dm6]	C	A	3.940e^-4	1	UPSTREAM CAHbeta INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	3365846	X_3365846_SNP [dm3] X_3471813_SNP [dm6]	G	A	3.946e^-4	1	INTRON CR44999 & 1 other
3L	4004446	3L_4004446_INS [dm3] 3L_4004446_INS [dm6]	C	CTACCAAAAAC...	3.953e^-4	1	UTR_3_PRIME CG14985 INTRON CG14985
2L	12030671	2L_12030671_SNP [dm3] 2L_12030671_SNP [dm6]	C	G	3.956e^-4	1	INTRON dmGlut	TF binding site mE1_TFBS_cad
2R	12963523	2R_12963523_SNP [dm3] 2R_17076018_SNP [dm6]	C	A	3.958e^-4	1	NON_SYNONYMOUS_CODING CG30460 INTRON CG30460	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24077670	3R_24077670_DEL [dm3] 3R_28251948_DEL [dm6]	ATTTAGTCTCCCCA...	A	3.960e^-4	1	INTERGENIC
3R	26160548	3R_26160548_SNP [dm3] 3R_30334826_SNP [dm6]	T	C	3.965e^-4	1	INTRON hdc
3L	13980739	3L_13980739_SNP [dm3] 3L_13987639_SNP [dm6]	G	C	3.976e^-4	1	UPSTREAM CG9040 DOWNSTREAM CG17362 INTRON CG17364
3R	24265856	3R_24265856_SNP [dm3] 3R_28440134_SNP [dm6]	A	C	3.987e^-4	1	INTRON beat-VI
3R	24265858	3R_24265858_SNP [dm3] 3R_28440136_SNP [dm6]	A	C	3.987e^-4	1	INTRON beat-VI
2R	2450676	2R_2450676_SNP [dm3] 2R_6563171_SNP [dm6]	T	G	3.989e^-4	1	INTRON jing	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	11663589	X_11663589_SNP [dm3] X_11769556_SNP [dm6]	C	G	3.991e^-4	1	DOWNSTREAM dy & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	17712058	3R_17712058_SNP [dm3] 3R_21886336_SNP [dm6]	A	C	3.992e^-4	1	SYNONYMOUS_CODING dnd UPSTREAM CG17819 & 1 other
3R	18166133	3R_18166133_SNP [dm3] 3R_22340411_SNP [dm6]	A	G	3.994e^-4	1	UPSTREAM CG5388 DOWNSTREAM CG5386 INTERGENIC
3L	7574926	3L_7574926_SNP [dm3] 3L_7581826_SNP [dm6]	A	G	3.996e^-4	1	INTERGENIC
X	20751307	X_20751307_INS [dm3] X_20880280_INS [dm6]	G	GAGCGTTAGAGTTCGTGTGG...	4.001e^-4	1	INTRON shakB	transposable element FlyBase
2L	9578093	2L_9578093_SNP [dm3] 2L_9578093_SNP [dm6]	C	A	4.004e^-4	1	DOWNSTREAM CG31709 INTERGENIC	regulatory region REDfly_CRMs
2L	6814497	2L_6814497_SNP [dm3] 2L_6814497_SNP [dm6]	T	C	4.027e^-4	1	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	11421313	3R_11421313_SNP [dm3] 3R_15595591_SNP [dm6]	A	T	4.028e^-4	1	INTERGENIC
2L	3154560	2L_3154560_SNP [dm3] 2L_3154560_SNP [dm6]	T	A	4.035e^-4	1	INTRON Mad
3L	7576992	3L_7576992_SNP [dm3] 3L_7583892_SNP [dm6]	A	G	4.041e^-4	1	SYNONYMOUS_CODING CG14838
3R	19321245	3R_19321245_SNP [dm3] 3R_23495523_SNP [dm6]	G	A	4.042e^-4	1	INTERGENIC
3R	19321254	3R_19321254_SNP [dm3] 3R_23495532_SNP [dm6]	A	T	4.042e^-4	1	INTERGENIC
3L	7410585	3L_7410585_SNP [dm3] 3L_7417485_SNP [dm6]	A	T	4.042e^-4	1	INTERGENIC
3R	9930879	3R_9930879_SNP [dm3] 3R_14105157_SNP [dm6]	A	C	4.052e^-4	1	UTR_3_PRIME CG12402
3R	17949259	3R_17949259_SNP [dm3] 3R_22123537_SNP [dm6]	A	T	4.054e^-4	1	INTRON CG42390
3R	13389785	3R_13389785_SNP [dm3] 3R_17564063_SNP [dm6]	C	T	4.056e^-4	1	INTRON Hmx
X	6284090	X_6284090_SNP [dm3] X_6390057_SNP [dm6]	C	A	4.059e^-4	1	INTERGENIC
3R	20331108	3R_20331108_SNP [dm3] 3R_24505386_SNP [dm6]	G	A	4.068e^-4	1	INTERGENIC
2R	3763150	2R_3763150_SNP [dm3] 2R_7875645_SNP [dm6]	T	C	4.079e^-4	1	INTRON Dgk
2L	7577021	2L_7577021_SNP [dm3] 2L_7577021_SNP [dm6]	C	T	4.084e^-4	1	UPSTREAM RapGAP1 INTRON RapGAP1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3L	21587685	3L_21587685_SNP [dm3] 3L_21594585_SNP [dm6]	A	T	4.091e^-4	1	UPSTREAM CR43940 INTRON TfAP-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15348550	2L_15348550_SNP [dm3] 2L_15348550_SNP [dm6]	T	A	4.105e^-4	1	INTERGENIC
3L	772028	3L_772028_SNP [dm3] 3L_772028_SNP [dm6]	G	T	4.114e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19198106	2L_19198106_SNP [dm3] 2L_19198106_SNP [dm6]	C	T	4.115e^-4	1	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	22003388	2L_22003388_INS [dm3] 2L_22003388_INS [dm6]	T	TCTCTAA	4.122e^-4	1	INTERGENIC	transposable element FlyBase
3R	18102687	3R_18102687_SNP [dm3] 3R_22276965_SNP [dm6]	G	T	4.136e^-4	1	INTRON SKIP
2L	9846468	2L_9846468_SNP [dm3] 2L_9846468_SNP [dm6]	T	C	4.137e^-4	1	INTRON nAChRalpha6
3R	5649605	3R_5649605_SNP [dm3] 3R_9823883_SNP [dm6]	A	T	4.147e^-4	1	UPSTREAM CG34302 DOWNSTREAM CR42858 INTERGENIC
X	6455074	X_6455074_SNP [dm3] X_6561041_SNP [dm6]	T	C	4.148e^-4	1	NON_SYNONYMOUS_CODING CG34417
3L	1884746	3L_1884746_SNP [dm3] 3L_1884746_SNP [dm6]	C	A	4.153e^-4	1	NON_SYNONYMOUS_CODING Aprt UPSTREAM Tmhs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17723585	3R_17723585_SNP [dm3] 3R_21897863_SNP [dm6]	A	G	4.167e^-4	1	INTRON CG6678
3L	18080510	3L_18080510_SNP [dm3] 3L_18087410_SNP [dm6]	A	T	4.172e^-4	1	UPSTREAM CR32194 & 1 other INTERGENIC
3R	10034648	3R_10034648_SNP [dm3] 3R_14208926_SNP [dm6]	C	T	4.178e^-4	1	INTRON Dop1R1
X	3362094	X_3362094_SNP [dm3] X_3468061_SNP [dm6]	T	A	4.179e^-4	1	INTRON CR44999 & 1 other
2L	1601798	2L_1601798_SNP [dm3] 2L_1601798_SNP [dm6]	C	T	4.181e^-4	1	SYNONYMOUS_CODING haf INTRON CG31935	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	19667156	3L_19667156_SNP [dm3] 3L_19674056_SNP [dm6]	G	A	4.188e^-4	1	INTERGENIC
X	3326911	X_3326911_SNP [dm3] X_3432878_SNP [dm6]	C	T	4.197e^-4	1	INTRON CR44999 & 1 other
2L	14565545	2L_14565545_SNP [dm3] 2L_14565545_SNP [dm6]	G	T	4.198e^-4	1	INTERGENIC
3R	7857042	3R_7857042_SNP [dm3] 3R_12031320_SNP [dm6]	C	A	4.227e^-4	1	SYNONYMOUS_CODING CG31358 UTR_5_PRIME CG42504 & 1 other
2R	9125764	2R_9125764_SNP [dm3] 2R_13238259_SNP [dm6]	A	G	4.231e^-4	1	SYNONYMOUS_CODING CG4679	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2R	13181603	2R_13181603_SNP [dm3] 2R_17294098_SNP [dm6]	C	T	4.243e^-4	1	INTRON mbl
2R	12814569	2R_12814569_SNP [dm3] 2R_16927064_SNP [dm6]	C	T	4.250e^-4	1	INTRON Pkc53E
3R	1731959	3R_1731959_SNP [dm3] 3R_5906237_SNP [dm6]	A	C	4.254e^-4	1	INTRON CG34113
2L	12372916	2L_12372916_DEL [dm3] 2L_12372916_DEL [dm6]	TT	T	4.262e^-4	1	INTRON bru-2
2L	12372924	2L_12372924_DEL [dm3] 2L_12372924_DEL [dm6]	TCCAGC	A	4.262e^-4	1	INTRON bru-2
X	9177997	X_9177997_SNP [dm3] X_9283964_SNP [dm6]	C	T	4.266e^-4	1	UPSTREAM c11.1 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	8814607	2L_8814607_SNP [dm3] 2L_8814607_SNP [dm6]	A	G	4.273e^-4	1	INTERGENIC
3R	10441992	3R_10441992_SNP [dm3] 3R_14616270_SNP [dm6]	A	G	4.280e^-4	1	INTRON CG14853
X	4012957	X_4012957_SNP [dm3] X_4118924_SNP [dm6]	G	C	4.295e^-4	1	SYNONYMOUS_CODING tyf UTR_5_PRIME tyf UPSTREAM tyf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	19985258	2R_19985258_SNP [dm3] 2R_24097735_SNP [dm6]	C	T	4.301e^-4	1	INTRON gek	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	1735681	3R_1735681_SNP [dm3] 3R_5909959_SNP [dm6]	G	T	4.313e^-4	1	INTRON CG34113
3R	18156939	3R_18156939_SNP [dm3] 3R_22331217_SNP [dm6]	G	A	4.314e^-4	1	SYNONYMOUS_CODING CG33721 UPSTREAM CG13862 DOWNSTREAM CG7080
3R	9939064	3R_9939064_SNP [dm3] 3R_14113342_SNP [dm6]	A	G	4.326e^-4	1	SYNONYMOUS_CODING Kif19A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17042976	2L_17042976_SNP [dm3] 2L_17042976_SNP [dm6]	C	G	4.327e^-4	1	INTRON CR43802 EXON CR43802
2L	20670436	2L_20670436_SNP [dm3] 2L_20670436_SNP [dm6]	G	A	4.341e^-4	1	INTRON CG31678
2R	14085626	2R_14085626_SNP [dm3] 2R_18198121_SNP [dm6]	T	G	4.345e^-4	1	INTERGENIC
X	5819165	X_5819165_SNP [dm3] X_5925132_SNP [dm6]	T	C	4.351e^-4	1	INTRON CG3726
2L	9509979	2L_9509979_SNP [dm3] 2L_9509979_SNP [dm6]	G	T	4.354e^-4	1	INTRON CG33298
3R	17521703	3R_17521703_SNP [dm3] 3R_21695981_SNP [dm6]	G	A	4.362e^-4	1	INTRON CG31176
2L	5687155	2L_5687155_SNP [dm3] 2L_5687155_SNP [dm6]	T	C	4.375e^-4	1	INTERGENIC
2R	16678283	2R_16678283_SNP [dm3] 2R_20790778_SNP [dm6]	G	C	4.381e^-4	1	NON_SYNONYMOUS_CODING CG43677 UPSTREAM CG43667 DOWNSTREAM CG43668
2L	10039392	2L_10039392_SNP [dm3] 2L_10039392_SNP [dm6]	A	G	4.383e^-4	1	DOWNSTREAM obst-B INTERGENIC
X	1933401	X_1933401_SNP [dm3] X_2039368_SNP [dm6]	A	C	4.389e^-4	1	UTR_3_PRIME usp INTRON Actn	TF binding site mE1_TFBS_chinmo
X	12378547	X_12378547_SNP [dm3] X_12484514_SNP [dm6]	C	T	4.395e^-4	1	INTERGENIC
3R	1735850	3R_1735850_SNP [dm3] 3R_5910128_SNP [dm6]	C	T	4.403e^-4	1	INTRON CG34113
X	12380095	X_12380095_SNP [dm3] X_12486062_SNP [dm6]	A	T	4.405e^-4	1	UPSTREAM Cpr11A INTERGENIC
X	2948354	X_2948354_SNP [dm3] X_3054321_SNP [dm6]	T	C	4.418e^-4	1	INTRON kirre	TF binding site BDTNP1_TFBS_dl
3L	15660667	3L_15660667_SNP [dm3] 3L_15667567_SNP [dm6]	G	A	4.419e^-4	1	INTERGENIC
3R	4807098	3R_4807098_SNP [dm3] 3R_8981376_SNP [dm6]	C	A	4.431e^-4	1	INTRON CAHbeta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	17042977	2L_17042977_SNP [dm3] 2L_17042977_SNP [dm6]	T	A	4.435e^-4	1	INTRON CR43802 EXON CR43802
2L	5689778	2L_5689778_SNP [dm3] 2L_5689778_SNP [dm6]	C	A	4.442e^-4	1	UPSTREAM CR44819 DOWNSTREAM CR44820 INTERGENIC
3R	12013657	3R_12013657_SNP [dm3] 3R_16187935_SNP [dm6]	C	A	4.442e^-4	1	INTRON sra	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5687973	2L_5687973_SNP [dm3] 2L_5687973_SNP [dm6]	A	G	4.444e^-4	1	INTERGENIC
2L	10739491	2L_10739491_SNP [dm3] 2L_10739491_SNP [dm6]	C	G	4.464e^-4	1	NON_SYNONYMOUS_CODING CG12299	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18391659	2L_18391659_SNP [dm3] 2L_18391659_SNP [dm6]	T	A	4.468e^-4	1	DOWNSTREAM Fas3 INTRON Fas3
2R	11894528	2R_11894528_SNP [dm3] 2R_16007023_SNP [dm6]	A	G	4.476e^-4	1	SPLICE_SITE_REGION CG8386 SYNONYMOUS_CODING CG8386 DOWNSTREAM CG8370	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	5339462	X_5339462_SNP [dm3] X_5445429_SNP [dm6]	G	A	4.484e^-4	1	INTERGENIC
3R	25095120	3R_25095120_SNP [dm3] 3R_29269398_SNP [dm6]	A	T	4.485e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	5845863	X_5845863_SNP [dm3] X_5951830_SNP [dm6]	A	T	4.488e^-4	1	UPSTREAM CG6048 DOWNSTREAM CG32755 INTERGENIC
X	8004911	X_8004911_SNP [dm3] X_8110878_SNP [dm6]	G	A	4.489e^-4	1	INTRON Gclc
2L	10608118	2L_10608118_SNP [dm3] 2L_10608118_SNP [dm6]	A	G	4.498e^-4	1	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18845313	2R_18845313_SNP [dm3] 2R_22957790_SNP [dm6]	G	A	4.503e^-4	1	UPSTREAM CR44780 INTERGENIC
3L	11648152	3L_11648152_SNP [dm3] 3L_11655052_SNP [dm6]	G	A	4.511e^-4	1	INTRON CG32085
2L	9847840	2L_9847840_INS [dm3] 2L_9847840_INS [dm6]	A	AA	4.512e^-4	1	UPSTREAM CR43766 INTRON nAChRalpha6
X	3164473	X_3164473_DEL [dm3] X_3270440_DEL [dm6]	GT	A	4.516e^-4	1	INTRON dnc
2L	7018966	2L_7018966_SNP [dm3] 2L_7018966_SNP [dm6]	A	C	4.517e^-4	1	NON_SYNONYMOUS_CODING ade3	TF binding site mE1_TFBS_chinmo
2R	2638998	2R_2638998_SNP [dm3] 2R_6751493_SNP [dm6]	C	T	4.517e^-4	1	UPSTREAM Eb1 INTRON Eb1
3L	19185599	3L_19185599_SNP [dm3] 3L_19192499_SNP [dm6]	A	T	4.519e^-4	1	INTRON fz2
X	17155872	X_17155872_SNP [dm3] X_17261839_SNP [dm6]	G	C	4.524e^-4	1	UPSTREAM f INTRON f
2L	5689790	2L_5689790_SNP [dm3] 2L_5689790_SNP [dm6]	C	T	4.526e^-4	1	UPSTREAM CR44819 DOWNSTREAM CR44820 INTERGENIC
2R	8640861	2R_8640861_SNP [dm3] 2R_12753356_SNP [dm6]	G	T	4.531e^-4	1	UPSTREAM mos INTRON Taz	TF binding site mE1_TFBS_inv
3L	4890725	3L_4890725_SNP [dm3] 3L_4890725_SNP [dm6]	C	A	4.535e^-4	1	INTRON CG17150
3R	19413408	3R_19413408_SNP [dm3] 3R_23587686_SNP [dm6]	G	C	4.539e^-4	1	SYNONYMOUS_CODING CG10182
2L	7633445	2L_7633445_SNP [dm3] 2L_7633445_SNP [dm6]	G	A	4.548e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	2638442	2R_2638442_SNP [dm3] 2R_6750937_SNP [dm6]	T	G	4.550e^-4	1	UPSTREAM Eb1 INTRON Eb1	TF binding site BDTNP1_TFBS_z
2L	2017453	2L_2017453_SNP [dm3] 2L_2017453_SNP [dm6]	A	G	4.552e^-4	1	UPSTREAM CG4238 INTRON CG4238
X	2662763	X_2662763_SNP [dm3] X_2768730_SNP [dm6]	T	C	4.553e^-4	1	INTRON kirre
X	2662798	X_2662798_SNP [dm3] X_2768765_SNP [dm6]	A	G	4.562e^-4	1	INTRON kirre
X	6536985	X_6536985_DEL [dm3] X_6642952_DEL [dm6]	TAAGAT	G	4.564e^-4	1	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	2818754	3L_2818754_SNP [dm3] 3L_2818754_SNP [dm6]	A	T	4.576e^-4	1	INTRON CG43444
2L	10729692	2L_10729692_SNP [dm3] 2L_10729692_SNP [dm6]	C	G	4.576e^-4	1	SYNONYMOUS_CODING CG6443 UPSTREAM CG17118 DOWNSTREAM CG6431	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11328201	3L_11328201_SNP [dm3] 3L_11335101_SNP [dm6]	T	C	4.601e^-4	1	INTERGENIC
3R	10219286	3R_10219286_SNP [dm3] 3R_14393564_SNP [dm6]	G	A	4.607e^-4	1	SYNONYMOUS_CODING cv-c
2L	19874064	2L_19874064_SNP [dm3] 2L_19874064_SNP [dm6]	A	C	4.610e^-4	1	INTRON sick
X	21898877	X_21898877_SNP [dm3] X_22497041_SNP [dm6]	C	T	4.615e^-4	1	INTRON l_1_G0196
2L	14595796	2L_14595796_SNP [dm3] 2L_14595796_SNP [dm6]	A	G	4.616e^-4	1	INTERGENIC
3L	1710188	3L_1710188_SNP [dm3] 3L_1710188_SNP [dm6]	G	A	4.616e^-4	1	INTRON CG7991	TF binding site mE1_TFBS_chinmo
3L	11280249	3L_11280249_SNP [dm3] 3L_11287149_SNP [dm6]	G	T	4.616e^-4	1	DOWNSTREAM CG6175 INTERGENIC
3L	4412888	3L_4412888_SNP [dm3] 3L_4412888_SNP [dm6]	T	A	4.622e^-4	1	INTRON DOR
2L	4274182	2L_4274182_DEL [dm3] 2L_4274182_DEL [dm6]	TTTCCGAATTAAAAGAG...	T	4.622e^-4	1	INTERGENIC
X	16376049	X_16376049_SNP [dm3] X_16482016_SNP [dm6]	A	G	4.652e^-4	1	INTRON para
3L	18543961	3L_18543961_SNP [dm3] 3L_18550861_SNP [dm6]	C	T	4.654e^-4	1	INTERGENIC
3R	4925243	3R_4925243_INS [dm3] 3R_9099521_INS [dm6]	A	AG	4.673e^-4	1	INTRON pum
3R	4925245	3R_4925245_DEL [dm3] 3R_9099523_DEL [dm6]	GATTTCTTCA	G	4.673e^-4	1	INTRON pum
2L	15348546	2L_15348546_SNP [dm3] 2L_15348546_SNP [dm6]	C	G	4.677e^-4	1	INTERGENIC
X	7584081	X_7584081_SNP [dm3] X_7690048_SNP [dm6]	A	C	4.683e^-4	1	INTRON CHES-1-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	1458151	2L_1458151_SNP [dm3] 2L_1458151_SNP [dm6]	A	T	4.693e^-4	1	INTERGENIC	TF binding site mE1_TFBS_sens
2L	3755950	2L_3755950_SNP [dm3] 2L_3755950_SNP [dm6]	G	A	4.703e^-4	1	INTERGENIC
2L	1442856	2L_1442856_SNP [dm3] 2L_1442856_SNP [dm6]	T	C	4.714e^-4	1	SYNONYMOUS_CODING CG43402
X	8043161	X_8043161_SNP [dm3] X_8149128_SNP [dm6]	C	G	4.715e^-4	1	SYNONYMOUS_CODING CG10959 DOWNSTREAM CG15336	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	23212360	3R_23212360_SNP [dm3] 3R_27386638_SNP [dm6]	G	A	4.720e^-4	1	INTRON side
3L	11279979	3L_11279979_SNP [dm3] 3L_11286879_SNP [dm6]	G	C	4.725e^-4	1	INTERGENIC
2L	14565549	2L_14565549_SNP [dm3] 2L_14565549_SNP [dm6]	A	G	4.728e^-4	1	INTERGENIC
2L	7621908	2L_7621908_SNP [dm3] 2L_7621908_SNP [dm6]	C	G	4.742e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3L	5426470	3L_5426470_SNP [dm3] 3L_5433370_SNP [dm6]	C	T	4.747e^-4	1	SYNONYMOUS_CODING CG34391
3L	17606609	3L_17606609_SNP [dm3] 3L_17613509_SNP [dm6]	G	A	4.750e^-4	1	INTRON Eip74EF	TF binding site BDTNP1_TFBS_z
X	2662779	X_2662779_SNP [dm3] X_2768746_SNP [dm6]	G	A	4.751e^-4	1	INTRON kirre
3L	2363058	3L_2363058_SNP [dm3] 3L_2363058_SNP [dm6]	C	T	4.761e^-4	1	DOWNSTREAM CG13801 INTERGENIC
2L	17176230	2L_17176230_SNP [dm3] 2L_17176230_SNP [dm6]	A	G	4.770e^-4	1	UPSTREAM Gr36a EXON CR44394
2R	17817892	2R_17817892_SNP [dm3] 2R_21930387_SNP [dm6]	G	A	4.784e^-4	1	INTRON Fili
3R	13345157	3R_13345157_SNP [dm3] 3R_17519435_SNP [dm6]	C	A	4.786e^-4	1	UPSTREAM CR44349 INTERGENIC
2R	12481240	2R_12481240_SNP [dm3] 2R_16593735_SNP [dm6]	G	A	4.796e^-4	1	INTRON CG8306	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	16468924	2L_16468924_DEL [dm3] 2L_16468924_DEL [dm6]	AT	A	4.801e^-4	1	INTRON dac
X	21879097	X_21879097_SNP [dm3] X_22477261_SNP [dm6]	T	G	4.803e^-4	1	SYNONYMOUS_CODING CG12576
3R	20663169	3R_20663169_SNP [dm3] 3R_24837447_SNP [dm6]	C	G	4.811e^-4	1	INTRON sosie
3R	20331104	3R_20331104_SNP [dm3] 3R_24505382_SNP [dm6]	C	T	4.812e^-4	1	INTERGENIC
3L	14596259	3L_14596259_SNP [dm3] 3L_14603159_SNP [dm6]	G	T	4.816e^-4	1	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	20470514	2L_20470514_SNP [dm3] 2L_20470514_SNP [dm6]	T	C	4.823e^-4	1	INTRON CR44980
3R	17550461	3R_17550461_SNP [dm3] 3R_21724739_SNP [dm6]	C	A	4.825e^-4	1	INTERGENIC
2L	15189870	2L_15189870_SNP [dm3] 2L_15189870_SNP [dm6]	C	T	4.825e^-4	1	INTRON CG4168
2L	15348551	2L_15348551_INS [dm3] 2L_15348551_INS [dm6]	T	TATTA	4.831e^-4	1	INTERGENIC
X	8874691	X_8874691_SNP [dm3] X_8980658_SNP [dm6]	T	A	4.832e^-4	1	INTRON rdgA & 1 other
3R	18154143	3R_18154143_SNP [dm3] 3R_22328421_SNP [dm6]	C	T	4.833e^-4	1	UPSTREAM CG7080 INTERGENIC
2L	3550348	2L_3550348_SNP [dm3] 2L_3550348_SNP [dm6]	G	C	4.837e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	15203865	2R_15203865_SNP [dm3] 2R_19316360_SNP [dm6]	T	A	4.843e^-4	1	INTRON Rgk1
X	2809969	X_2809969_SNP [dm3] X_2915936_SNP [dm6]	G	C	4.845e^-4	1	INTRON kirre
3R	25094158	3R_25094158_SNP [dm3] 3R_29268436_SNP [dm6]	C	G	4.850e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
X	2628002	X_2628002_SNP [dm3] X_2733969_SNP [dm6]	G	A	4.882e^-4	1	SYNONYMOUS_CODING CG2712 DOWNSTREAM crm	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12497124	X_12497124_SNP [dm3] X_12603091_SNP [dm6]	T	C	4.884e^-4	1	SYNONYMOUS_CODING Sec16	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4889987	3R_4889987_SNP [dm3] 3R_9064265_SNP [dm6]	C	T	4.885e^-4	1	NON_SYNONYMOUS_CODING beag UPSTREAM Ada	TF binding site mE1_TFBS_sens
2L	9490372	2L_9490372_SNP [dm3] 2L_9490372_SNP [dm6]	A	G	4.887e^-4	1	DOWNSTREAM Gdi INTERGENIC
3R	14145709	3R_14145709_SNP [dm3] 3R_18319987_SNP [dm6]	A	C	4.887e^-4	1	INTRON CG31235
3R	12764097	3R_12764097_SNP [dm3] 3R_16938375_SNP [dm6]	C	T	4.891e^-4	1	INTRON Abd-B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	21899855	X_21899855_SNP [dm3] X_22498019_SNP [dm6]	C	G	4.904e^-4	1	SYNONYMOUS_CODING l_1_G0196	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	21899912	X_21899912_SNP [dm3] X_22498076_SNP [dm6]	T	A	4.905e^-4	1	SYNONYMOUS_CODING l_1_G0196	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1702115	3L_1702115_SNP [dm3] 3L_1702115_SNP [dm6]	A	C	4.914e^-4	1	INTRON CG7991 & 1 other
2R	2590093	2R_2590093_SNP [dm3] 2R_6702588_SNP [dm6]	C	T	4.917e^-4	1	SYNONYMOUS_CODING CG3409 UTR_3_PRIME CG45092	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	17625012	3L_17625012_SNP [dm3] 3L_17631912_SNP [dm6]	C	A	4.924e^-4	1	DOWNSTREAM CG7510 EXON CR44566
X	10978849	X_10978849_SNP [dm3] X_11084816_SNP [dm6]	T	C	4.931e^-4	1	INTRON sev
3L	2528059	3L_2528059_SNP [dm3] 3L_2528059_SNP [dm6]	A	G	4.936e^-4	1	INTRON Spn
2L	19874063	2L_19874063_SNP [dm3] 2L_19874063_SNP [dm6]	A	C	4.944e^-4	1	INTRON sick
2R	12543069	2R_12543069_SNP [dm3] 2R_16655564_SNP [dm6]	T	G	4.945e^-4	1	UTR_3_PRIME Picot UPSTREAM Nach	TF binding site mE1_TFBS_cad
3L	13915432	3L_13915432_SNP [dm3] 3L_13922332_SNP [dm6]	T	C	4.952e^-4	1	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	17528606	3R_17528606_SNP [dm3] 3R_21702884_SNP [dm6]	G	A	4.953e^-4	1	INTRON CG31176
X	4299427	X_4299427_SNP [dm3] X_4405394_SNP [dm6]	G	C	4.953e^-4	1	INTRON CR32773
3R	17949288	3R_17949288_SNP [dm3] 3R_22123566_SNP [dm6]	C	T	4.966e^-4	1	INTRON CG42390
3R	16703584	3R_16703584_SNP [dm3] 3R_20877862_SNP [dm6]	C	T	4.967e^-4	1	SYNONYMOUS_CODING TotZ DOWNSTREAM CR44048
3L	1025318	3L_1025318_SNP [dm3] 3L_1025318_SNP [dm6]	G	A	4.968e^-4	1	SYNONYMOUS_CODING trio	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	4877819	3R_4877819_SNP [dm3] 3R_9052097_SNP [dm6]	G	C	4.969e^-4	1	UTR_3_PRIME Mst85C UPSTREAM Kdm2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	7725858	2L_7725858_SNP [dm3] 2L_7725858_SNP [dm6]	C	A	4.972e^-4	1	INTRON CG13795
3L	21627806	3L_21627806_SNP [dm3] 3L_21634706_SNP [dm6]	T	C	4.973e^-4	1	UPSTREAM ORMDL & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	12014093	3R_12014093_SNP [dm3] 3R_16188371_SNP [dm6]	C	T	4.976e^-4	1	INTRON sra
3R	26200895	3R_26200895_SNP [dm3] 3R_30375173_SNP [dm6]	C	T	4.992e^-4	1	INTERGENIC
2L	13556563	2L_13556563_SNP [dm3] 2L_13556563_SNP [dm6]	T	C	4.993e^-4	1	INTRON kuz
2L	1201875	2L_1201875_SNP [dm3] 2L_1201875_SNP [dm6]	T	A	4.995e^-4	1	DOWNSTREAM CG5011 INTERGENIC
3R	23520770	3R_23520770_SNP [dm3] 3R_27695048_SNP [dm6]	C	A	5.001e^-4	1	UTR_3_PRIME Acp98AB UPSTREAM CG43320 DOWNSTREAM CG43319
3R	4817823	3R_4817823_SNP [dm3] 3R_8992101_SNP [dm6]	G	A	5.011e^-4	1	NON_SYNONYMOUS_CODING E_var_3-9	TF binding site BDTNP1_TFBS_Med mE1_TFBS_sens
3R	10547438	3R_10547438_SNP [dm3] 3R_14721716_SNP [dm6]	A	G	5.020e^-4	1	INTRON kibra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	13758979	2L_13758979_SNP [dm3] 2L_13758979_SNP [dm6]	C	A	5.031e^-4	1	INTRON TM9SF4
3R	10547405	3R_10547405_INS [dm3] 3R_14721683_INS [dm6]	T	TTAAAGT	5.032e^-4	1	INTRON kibra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	14039332	X_14039332_DEL [dm3] X_14145299_DEL [dm6]	GCCCAC	G	5.036e^-4	1	INTERGENIC
2R	8639688	2R_8639688_SNP [dm3] 2R_12752183_SNP [dm6]	T	A	5.039e^-4	1	SYNONYMOUS_CODING mos DOWNSTREAM CG42663 & 1 other	TF binding site mE1_TFBS_HSA
3L	5868018	3L_5868018_SNP [dm3] 3L_5874918_SNP [dm6]	A	G	5.050e^-4	1	NON_SYNONYMOUS_CODING CG18586
3L	4864280	3L_4864280_SNP [dm3] 3L_4864280_SNP [dm6]	G	A	5.074e^-4	1	NON_SYNONYMOUS_CODING CG17150 INTRON CG17150
2L	14565546	2L_14565546_SNP [dm3] 2L_14565546_SNP [dm6]	A	G	5.083e^-4	1	INTERGENIC
2R	14565553	2R_14565553_SNP [dm3] 2R_18678048_SNP [dm6]	C	T	5.083e^-4	1	DOWNSTREAM CG44434 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
X	15096173	X_15096173_SNP [dm3] X_15202140_SNP [dm6]	T	A	5.096e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
2R	18066754	2R_18066754_SNP [dm3] 2R_22179249_SNP [dm6]	A	C	5.099e^-4	1	UPSTREAM CG11170 & 1 other INTRON CG11170	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	13555366	3L_13555366_SNP [dm3] 3L_13562266_SNP [dm6]	T	C	5.120e^-4	1	INTRON bru-3	TF binding site mE1_TFBS_chinmo
2R	13056937	2R_13056937_SNP [dm3] 2R_17169432_SNP [dm6]	C	T	5.122e^-4	1	INTERGENIC
3R	3460729	3R_3460729_SNP [dm3] 3R_7635007_SNP [dm6]	G	A	5.130e^-4	1	INTRON CG34127
2L	9845119	2L_9845119_SNP [dm3] 2L_9845119_SNP [dm6]	G	A	5.133e^-4	1	INTRON nAChRalpha6
X	616267	X_616267_DEL [dm3] X_722234_DEL [dm6]	ACC	T	5.133e^-4	1	INTRON sdk
X	8523605	X_8523605_SNP [dm3] X_8629572_SNP [dm6]	C	T	5.141e^-4	1	DOWNSTREAM oc INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7362111	2L_7362111_SNP [dm3] 2L_7362111_SNP [dm6]	C	A	5.145e^-4	1	INTERGENIC	TF binding site mE1_TFBS_Kr
X	6523862	X_6523862_DEL [dm3] X_6629829_DEL [dm6]	AGTATAAAG	A	5.150e^-4	1	INTRON pigs
X	6523881	X_6523881_DEL [dm3] X_6629848_DEL [dm6]	AAACTGTATAACGATCTCTG...	A	5.150e^-4	1	INTRON pigs
2L	5582404	2L_5582404_SNP [dm3] 2L_5582404_SNP [dm6]	T	G	5.154e^-4	1	INTERGENIC
2R	16685397	2R_16685397_SNP [dm3] 2R_20797892_SNP [dm6]	G	T	5.158e^-4	1	INTERGENIC
X	9561289	X_9561289_DEL [dm3] X_9667256_DEL [dm6]	TCT	T	5.159e^-4	1	UTR_3_PRIME nej
X	21898929	X_21898929_SNP [dm3] X_22497093_SNP [dm6]	G	C	5.163e^-4	1	INTRON l_1_G0196
2L	2056622	2L_2056622_SNP [dm3] 2L_2056622_SNP [dm6]	G	A	5.164e^-4	1	INTRON Or22c
3R	4882865	3R_4882865_SNP [dm3] 3R_9057143_SNP [dm6]	A	C	5.170e^-4	1	INTRON Kdm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3R	11327446	3R_11327446_SNP [dm3] 3R_15501724_SNP [dm6]	T	C	5.175e^-4	1	INTERGENIC
3R	9095372	3R_9095372_SNP [dm3] 3R_13269650_SNP [dm6]	A	T	5.191e^-4	1	SYNONYMOUS_CODING CG8449 UTR_3_PRIME Su_var_3-7 DOWNSTREAM Su_var_3-7
3L	11275409	3L_11275409_SNP [dm3] 3L_11282309_SNP [dm6]	A	C	5.203e^-4	1	INTERGENIC
3R	13809375	3R_13809375_SNP [dm3] 3R_17983653_SNP [dm6]	G	T	5.209e^-4	1	INTRON cpo
3R	24480037	3R_24480037_SNP [dm3] 3R_28654315_SNP [dm6]	T	C	5.225e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	18296435	2L_18296435_SNP [dm3] 2L_18296435_SNP [dm6]	C	A	5.230e^-4	1	SYNONYMOUS_CODING CG5790	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	8920552	3R_8920552_SNP [dm3] 3R_13094830_SNP [dm6]	G	A	5.240e^-4	1	INTRON timeout
2L	13568336	2L_13568336_SNP [dm3] 2L_13568336_SNP [dm6]	C	A	5.246e^-4	1	INTRON kuz
3L	17977520	3L_17977520_SNP [dm3] 3L_17984420_SNP [dm6]	G	A	5.246e^-4	1	INTRON Eip75B
3L	4004368	3L_4004368_SNP [dm3] 3L_4004368_SNP [dm6]	T	C	5.264e^-4	1	INTRON CG14985
2L	17531627	2L_17531627_SNP [dm3] 2L_17531627_SNP [dm6]	G	A	5.264e^-4	1	SYNONYMOUS_CODING CG15145	TF binding site mE1_TFBS_cad
3R	25509306	3R_25509306_SNP [dm3] 3R_29683584_SNP [dm6]	T	A	5.266e^-4	1	SYNONYMOUS_CODING Gycalpha99B	TF binding site mE1_TFBS_cad
3L	4725891	3L_4725891_SNP [dm3] 3L_4725891_SNP [dm6]	A	C	5.304e^-4	1	INTRON RhoGEF64C	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	20241247	3R_20241247_SNP [dm3] 3R_24415525_SNP [dm6]	C	A	5.305e^-4	1	INTRON nAChRalpha1
3R	18166030	3R_18166030_SNP [dm3] 3R_22340308_SNP [dm6]	T	C	5.314e^-4	1	UPSTREAM CG5388 DOWNSTREAM CG5386 INTERGENIC
2R	19162264	2R_19162264_SNP [dm3] 2R_23274741_SNP [dm6]	C	T	5.318e^-4	1	UTR_5_PRIME ord UPSTREAM ord
3R	13013567	3R_13013567_SNP [dm3] 3R_17187845_SNP [dm6]	G	T	5.330e^-4	1	INTRON Mur89F
X	19178870	X_19178870_SNP [dm3] X_19284837_SNP [dm6]	C	G	5.375e^-4	1	UPSTREAM CG8034 INTRON CG8034	TF binding site mE1_TFBS_chinmo
2L	18282299	2L_18282299_DEL [dm3] 2L_18282299_DEL [dm6]	TGGTCATTCATATT...	T	5.393e^-4	1	INTERGENIC
2R	837772	2R_837772_SNP [dm3] 2R_4950267_SNP [dm6]	T	G	5.400e^-4	1	INTRON Ir41a
3R	14145708	3R_14145708_SNP [dm3] 3R_18319986_SNP [dm6]	C	A	5.402e^-4	1	INTRON CG31235
3L	19036239	3L_19036239_SNP [dm3] 3L_19043139_SNP [dm6]	T	A	5.408e^-4	1	INTRON nkd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	18153925	3R_18153925_SNP [dm3] 3R_22328203_SNP [dm6]	G	T	5.414e^-4	1	INTERGENIC
2L	19292100	2L_19292100_DEL [dm3] 2L_19292100_DEL [dm6]	GAGAAGTG	G	5.431e^-4	1	INTERGENIC
3R	18560301	3R_18560301_SNP [dm3] 3R_22734579_SNP [dm6]	A	T	5.444e^-4	1	SPLICE_SITE_REGION Dcr-1 UPSTREAM Takl2 INTRON Dcr-1	TF binding site mE1_TFBS_cad
3L	2544385	3L_2544385_INS [dm3] 3L_2544385_INS [dm6]	G	GG	5.445e^-4	1	INTRON Spn
3L	18255536	3L_18255536_MNP [dm3] 3L_18262436_MNP [dm6]	TCA	CAC	5.447e^-4	1	INTERGENIC
2L	9847456	2L_9847456_SNP [dm3] 2L_9847456_SNP [dm6]	A	G	5.468e^-4	1	UPSTREAM CR43766 INTRON nAChRalpha6
2R	12712526	2R_12712526_SNP [dm3] 2R_16825021_SNP [dm6]	C	G	5.482e^-4	1	UPSTREAM CG34459 INTRON CG34459
3R	17937363	3R_17937363_SNP [dm3] 3R_22111641_SNP [dm6]	G	C	5.489e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	17636192	3L_17636192_SNP [dm3] 3L_17643092_SNP [dm6]	C	T	5.491e^-4	1	INTRON Pep	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11505120	2R_11505120_SNP [dm3] 2R_15617615_SNP [dm6]	A	C	5.494e^-4	1	INTRON CG42524
X	2673305	X_2673305_SNP [dm3] X_2779272_SNP [dm6]	C	A	5.500e^-4	1	INTRON kirre
3R	19017788	3R_19017788_SNP [dm3] 3R_23192066_SNP [dm6]	T	G	5.500e^-4	1	SYNONYMOUS_CODING cnc UPSTREAM cnc	TF binding site BDTNP1_TFBS_z
X	8034308	X_8034308_SNP [dm3] X_8140275_SNP [dm6]	T	C	5.507e^-4	1	SYNONYMOUS_CODING Smox	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	10442039	3R_10442039_SNP [dm3] 3R_14616317_SNP [dm6]	A	G	5.516e^-4	1	INTRON CG14853
2R	14047827	2R_14047827_SNP [dm3] 2R_18160322_SNP [dm6]	A	C	5.520e^-4	1	UPSTREAM CG10915 DOWNSTREAM CG10914 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Ubx
3R	7766539	3R_7766539_SNP [dm3] 3R_11940817_SNP [dm6]	G	A	5.525e^-4	1	INTRON Cad87A
2R	12551933	2R_12551933_SNP [dm3] 2R_16664428_SNP [dm6]	A	G	5.530e^-4	1	UPSTREAM Picot INTRON Picot	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	4785755	3R_4785755_SNP [dm3] 3R_8960033_SNP [dm6]	A	G	5.541e^-4	1	INTRON CG11966
3L	10651926	3L_10651926_SNP [dm3] 3L_10658826_SNP [dm6]	T	A	5.544e^-4	1	INTRON CG32066	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	9841528	2L_9841528_DEL [dm3] 2L_9841528_DEL [dm6]	AA	A	5.544e^-4	1	INTRON nAChRalpha6
2L	5687786	2L_5687786_SNP [dm3] 2L_5687786_SNP [dm6]	G	T	5.545e^-4	1	INTERGENIC
3R	17632572	3R_17632572_SNP [dm3] 3R_21806850_SNP [dm6]	A	G	5.547e^-4	1	INTRON CASK
2L	11069611	2L_11069611_SNP [dm3] 2L_11069611_SNP [dm6]	G	T	5.550e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	12013890	3R_12013890_SNP [dm3] 3R_16188168_SNP [dm6]	T	A	5.553e^-4	1	INTRON sra
3L	12896925	3L_12896925_SNP [dm3] 3L_12903825_SNP [dm6]	G	T	5.555e^-4	1	UPSTREAM CG32117 INTERGENIC
X	8946346	X_8946346_SNP [dm3] X_9052313_SNP [dm6]	T	C	5.560e^-4	1	SYNONYMOUS_CODING CG42388	TF binding site mE1_TFBS_chinmo
3R	19340661	3R_19340661_SNP [dm3] 3R_23514939_SNP [dm6]	C	A	5.563e^-4	1	NON_SYNONYMOUS_CODING Irk2	TF binding site mE1_TFBS_sens
3L	336427	3L_336427_SNP [dm3] 3L_336427_SNP [dm6]	A	G	5.571e^-4	1	SYNONYMOUS_CODING mthl10 INTRON Ptpmeg	TF binding site mE1_TFBS_cad
3R	10547497	3R_10547497_SNP [dm3] 3R_14721775_SNP [dm6]	C	T	5.574e^-4	1	INTRON kibra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	12396039	2R_12396039_DEL [dm3] 2R_16508534_DEL [dm6]	AT	A	5.576e^-4	1	INTRON Sema-2a
2L	1156769	2L_1156769_SNP [dm3] 2L_1156769_SNP [dm6]	C	T	5.577e^-4	1	UPSTREAM capt INTRON capt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	14636422	3L_14636422_SNP [dm3] 3L_14643322_SNP [dm6]	A	G	5.584e^-4	1	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	4715234	X_4715234_SNP [dm3] X_4821201_SNP [dm6]	A	G	5.584e^-4	1	INTERGENIC
2R	948371	2R_948371_SNP [dm3] 2R_5060866_SNP [dm6]	T	C	5.594e^-4	1	INTERGENIC	transposable element FlyBase
3R	19358567	3R_19358567_SNP [dm3] 3R_23532845_SNP [dm6]	C	A	5.602e^-4	1	DOWNSTREAM CG10170 INTERGENIC
X	4294116	X_4294116_SNP [dm3] X_4400083_SNP [dm6]	C	A	5.603e^-4	1	INTRON CR32773
2L	827721	2L_827721_SNP [dm3] 2L_827721_SNP [dm6]	G	A	5.604e^-4	1	INTRON dock	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8784781	X_8784781_SNP [dm3] X_8890748_SNP [dm6]	C	G	5.607e^-4	1	INTRON Moe	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	8371128	2L_8371128_SNP [dm3] 2L_8371128_SNP [dm6]	T	C	5.610e^-4	1	UTR_5_PRIME CG17292 UPSTREAM CR45341 INTRON CG17292
X	20751301	X_20751301_INS [dm3] X_20880274_INS [dm6]	G	GTGGGCGTGACTGGTTCGGC...	5.612e^-4	1	INTRON shakB	transposable element FlyBase
2R	10034642	2R_10034642_SNP [dm3] 2R_14147137_SNP [dm6]	C	G	5.613e^-4	1	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	12163724	2L_12163724_SNP [dm3] 2L_12163724_SNP [dm6]	C	A	5.615e^-4	1	UPSTREAM ZnT33D INTRON CG31760
3R	13920349	3R_13920349_SNP [dm3] 3R_18094627_SNP [dm6]	A	G	5.618e^-4	1	INTRON sr
3R	21438874	3R_21438874_SNP [dm3] 3R_25613152_SNP [dm6]	A	T	5.623e^-4	1	UPSTREAM CG5079 INTRON Npl4
X	3610662	X_3610662_SNP [dm3] X_3716629_SNP [dm6]	G	A	5.624e^-4	1	UTR_5_PRIME Rala INTRON Rala
3L	8255122	3L_8255122_SNP [dm3] 3L_8262022_SNP [dm6]	C	T	5.626e^-4	1	INTRON Dscam4
2L	5538405	2L_5538405_SNP [dm3] 2L_5538405_SNP [dm6]	C	T	5.630e^-4	1	SYNONYMOUS_CODING CG14015 DOWNSTREAM Hel25E	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	10228218	X_10228218_INS [dm3] X_10334185_INS [dm6]	T	TGAT	5.646e^-4	1	INTRON CG43740	TF binding site BDTNP1_TFBS_twi
2R	2450765	2R_2450765_SNP [dm3] 2R_6563260_SNP [dm6]	G	A	5.651e^-4	1	INTRON jing	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	15645582	X_15645582_SNP [dm3] X_15751549_SNP [dm6]	G	T	5.658e^-4	1	UTR_3_PRIME CG8239 DOWNSTREAM Graf & 1 other
3R	17949334	3R_17949334_DEL [dm3] 3R_22123612_DEL [dm6]	TT	T	5.664e^-4	1	INTRON CG42390
3R	14005934	3R_14005934_SNP [dm3] 3R_18180212_SNP [dm6]	A	G	5.674e^-4	1	SYNONYMOUS_CODING cdm DOWNSTREAM PP2A-B'
2R	17394389	2R_17394389_SNP [dm3] 2R_21506884_SNP [dm6]	C	T	5.674e^-4	1	INTRON MESK2
3R	4878103	3R_4878103_SNP [dm3] 3R_9052381_SNP [dm6]	A	T	5.687e^-4	1	UPSTREAM Kdm2 DOWNSTREAM Mst85C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	8505253	2L_8505253_SNP [dm3] 2L_8505253_SNP [dm6]	A	G	5.696e^-4	1	INTRON Dh31
2L	7242317	2L_7242317_SNP [dm3] 2L_7242317_SNP [dm6]	C	T	5.712e^-4	1	INTRON Ndae1
X	3365604	X_3365604_SNP [dm3] X_3471571_SNP [dm6]	A	C	5.725e^-4	1	INTRON CR44999 & 1 other
X	9177862	X_9177862_SNP [dm3] X_9283829_SNP [dm6]	A	G	5.726e^-4	1	UPSTREAM c11.1 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	18150751	3R_18150751_SNP [dm3] 3R_22325029_SNP [dm6]	T	A	5.734e^-4	1	UPSTREAM CG34377 INTERGENIC
3R	19358632	3R_19358632_SNP [dm3] 3R_23532910_SNP [dm6]	T	C	5.734e^-4	1	DOWNSTREAM CG10170 INTERGENIC
2L	15348566	2L_15348566_SNP [dm3] 2L_15348566_SNP [dm6]	T	A	5.740e^-4	1	INTERGENIC
2R	12481282	2R_12481282_SNP [dm3] 2R_16593777_SNP [dm6]	A	G	5.749e^-4	1	INTRON CG8306	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	17016688	2R_17016688_SNP [dm3] 2R_21129183_SNP [dm6]	C	T	5.760e^-4	1	SYNONYMOUS_CODING mago UPSTREAM CG4050 DOWNSTREAM Magi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	13556667	2L_13556667_SNP [dm3] 2L_13556667_SNP [dm6]	T	G	5.767e^-4	1	INTRON kuz
2R	5981894	2R_5981894_SNP [dm3] 2R_10094389_SNP [dm6]	A	C	5.770e^-4	1	SYNONYMOUS_CODING CG2269	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8811049	2L_8811049_DEL [dm3] 2L_8811049_DEL [dm6]	CACA	C	5.771e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	8811054	2L_8811054_DEL [dm3] 2L_8811054_DEL [dm6]	AT	A	5.771e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	19304611	2R_19304611_SNP [dm3] 2R_23417088_SNP [dm6]	A	T	5.773e^-4	1	UTR_3_PRIME CG30411 INTRON CG9812	TF binding site mE1_TFBS_HSA
2L	15348564	2L_15348564_INS [dm3] 2L_15348564_INS [dm6]	T	TACAG	5.779e^-4	1	INTERGENIC
3L	13302824	3L_13302824_SNP [dm3] 3L_13309724_SNP [dm6]	A	T	5.780e^-4	1	INTERGENIC
3L	14631631	3L_14631631_SNP [dm3] 3L_14638531_SNP [dm6]	C	A	5.786e^-4	1	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9172163	3L_9172163_SNP [dm3] 3L_9179063_SNP [dm6]	C	T	5.786e^-4	1	INTRON Rdl
3R	18161269	3R_18161269_SNP [dm3] 3R_22335547_SNP [dm6]	G	T	5.789e^-4	1	INTRON CG5388
3L	15674241	3L_15674241_SNP [dm3] 3L_15681141_SNP [dm6]	A	C	5.805e^-4	1	NON_SYNONYMOUS_CODING CG7304 DOWNSTREAM CG7579
2L	10609084	2L_10609084_SNP [dm3] 2L_10609084_SNP [dm6]	C	T	5.808e^-4	1	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3R	24351806	3R_24351806_SNP [dm3] 3R_28526084_SNP [dm6]	G	T	5.817e^-4	1	INTRON Ppn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8441884	3L_8441884_SNP [dm3] 3L_8448784_SNP [dm6]	T	C	5.818e^-4	1	INTRON CG6983	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv
3L	10721385	3L_10721385_SNP [dm3] 3L_10728285_SNP [dm6]	C	A	5.819e^-4	1	INTERGENIC
X	21902441	X_21902441_INS [dm3] X_22500605_INS [dm6]	T	TATTTCAT	5.824e^-4	1	INTRON l_1_G0196	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8640500	2R_8640500_SNP [dm3] 2R_12752995_SNP [dm6]	T	C	5.825e^-4	1	UPSTREAM mos DOWNSTREAM Taz INTERGENIC
2L	4273352	2L_4273352_SNP [dm3] 2L_4273352_SNP [dm6]	G	T	5.825e^-4	1	INTERGENIC
3L	9051840	3L_9051840_SNP [dm3] 3L_9058740_SNP [dm6]	C	A	5.827e^-4	1	INTRON Argk	TF binding site mE1_TFBS_Trl
2L	298640	2L_298640_SNP [dm3] 2L_298640_SNP [dm6]	C	T	5.828e^-4	1	INTRON Pi3K21B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15280313	3L_15280313_SNP [dm3] 3L_15287213_SNP [dm6]	A	G	5.831e^-4	1	INTERGENIC
3L	7127288	3L_7127288_SNP [dm3] 3L_7134188_SNP [dm6]	C	T	5.835e^-4	1	UPSTREAM melt DOWNSTREAM Dbi INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	11690005	3R_11690005_SNP [dm3] 3R_15864283_SNP [dm6]	C	T	5.836e^-4	1	INTRON CG31183
2L	14457152	2L_14457152_MNP [dm3] 2L_14457152_MNP [dm6]	GTG	AGA	5.848e^-4	1	EXON CR44730	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	21627851	3L_21627851_SNP [dm3] 3L_21634751_SNP [dm6]	C	T	5.865e^-4	1	UPSTREAM ORMDL & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	18845026	2R_18845026_SNP [dm3] 2R_22957503_SNP [dm6]	G	A	5.870e^-4	1	UPSTREAM CR44780 INTERGENIC
X	21867693	X_21867693_SNP [dm3] X_22465857_SNP [dm6]	C	T	5.870e^-4	1	UPSTREAM CG14619 INTRON CG14619
2L	1944341	2L_1944341_SNP [dm3] 2L_1944341_SNP [dm6]	G	C	5.871e^-4	1	DOWNSTREAM CG7337 & 1 other INTERGENIC
3L	6955805	3L_6955805_SNP [dm3] 3L_6962705_SNP [dm6]	T	G	5.881e^-4	1	INTRON sgl
3R	12764148	3R_12764148_SNP [dm3] 3R_16938426_SNP [dm6]	C	T	5.883e^-4	1	INTRON Abd-B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	7632475	2L_7632475_DEL [dm3] 2L_7632475_DEL [dm6]	TT	T	5.902e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22873334	3R_22873334_SNP [dm3] 3R_27047612_SNP [dm6]	A	T	5.907e^-4	1	INTRON RYa-R
2R	10608720	2R_10608720_SNP [dm3] 2R_14721215_SNP [dm6]	C	G	5.908e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
2R	18477583	2R_18477583_SNP [dm3] 2R_22590078_SNP [dm6]	G	A	5.910e^-4	1	INTRON dnr1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	10351825	2L_10351825_SNP [dm3] 2L_10351825_SNP [dm6]	G	A	5.912e^-4	1	SYNONYMOUS_CODING CG34367
2L	17176017	2L_17176017_SNP [dm3] 2L_17176017_SNP [dm6]	T	G	5.916e^-4	1	UPSTREAM Gr36a EXON CR44394
X	19170585	X_19170585_SNP [dm3] X_19276552_SNP [dm6]	G	A	5.922e^-4	1	SYNONYMOUS_CODING CG32536 UPSTREAM CG32537 DOWNSTREAM CG8028
X	9510692	X_9510692_SNP [dm3] X_9616659_SNP [dm6]	C	A	5.924e^-4	1	INTRON CG42797
2R	17016799	2R_17016799_SNP [dm3] 2R_21129294_SNP [dm6]	T	C	5.929e^-4	1	UTR_3_PRIME mago UPSTREAM CG4050 DOWNSTREAM Magi	TF binding site BDTNP1_TFBS_dl
2L	4332544	2L_4332544_SNP [dm3] 2L_4332544_SNP [dm6]	A	G	5.935e^-4	1	DOWNSTREAM CG16857 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	13000242	3L_13000242_SNP [dm3] 3L_13007142_SNP [dm6]	T	C	5.940e^-4	1	SYNONYMOUS_CODING CG11263	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	1343934	2L_1343934_SNP [dm3] 2L_1343934_SNP [dm6]	C	T	5.942e^-4	1	SYNONYMOUS_CODING CG33922 UPSTREAM Cdlc2
3R	17536466	3R_17536466_SNP [dm3] 3R_21710744_SNP [dm6]	A	G	5.946e^-4	1	INTRON CG31176
2L	915308	2L_915308_SNP [dm3] 2L_915308_SNP [dm6]	T	C	5.956e^-4	1	INTRON GluRIIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22215811	3L_22215811_SNP [dm3] 3L_22222711_SNP [dm6]	C	G	5.973e^-4	1	INTRON olf413
3R	3569685	3R_3569685_SNP [dm3] 3R_7743963_SNP [dm6]	T	A	5.975e^-4	1	INTERGENIC
3R	22878937	3R_22878937_SNP [dm3] 3R_27053215_SNP [dm6]	G	T	5.975e^-4	1	INTRON RYa-R	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12570428	2L_12570428_SNP [dm3] 2L_12570428_SNP [dm6]	C	A	5.975e^-4	1	DOWNSTREAM CR44598 & 1 other INTERGENIC
2L	1606492	2L_1606492_SNP [dm3] 2L_1606492_SNP [dm6]	G	A	5.977e^-4	1	SYNONYMOUS_CODING haf INTRON CG31935
3R	10547388	3R_10547388_SNP [dm3] 3R_14721666_SNP [dm6]	A	T	5.978e^-4	1	INTRON kibra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	7376859	2L_7376859_SNP [dm3] 2L_7376859_SNP [dm6]	C	A	6.000e^-4	1	UPSTREAM ninaC INTRON Wnt10
3L	15119267	3L_15119267_INS [dm3] 3L_15126167_INS [dm6]	A	AG	6.001e^-4	1	UPSTREAM CG16959 INTRON Cep135	TF binding site BDTNP1_TFBS_Med
3R	20331038	3R_20331038_DEL [dm3] 3R_24505316_DEL [dm6]	TAGGAACGCAGCGAAAAATG...	T	6.005e^-4	1	INTERGENIC
X	16596944	X_16596944_SNP [dm3] X_16702911_SNP [dm6]	G	T	6.019e^-4	1	UTR_3_PRIME CG9673 UPSTREAM spheroide INTRON CG4678
3R	9587841	3R_9587841_SNP [dm3] 3R_13762119_SNP [dm6]	T	A	6.024e^-4	1	UTR_3_PRIME CG34383 DOWNSTREAM CG34383 INTRON CG34383
2L	21756295	2L_21756295_SNP [dm3] 2L_21756295_SNP [dm6]	A	T	6.031e^-4	1	INTRON step	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
X	8874855	X_8874855_INS [dm3] X_8980822_INS [dm6]	A	AC	6.044e^-4	1	INTRON rdgA & 1 other
3L	3122564	3L_3122564_SNP [dm3] 3L_3122564_SNP [dm6]	A	G	6.048e^-4	1	UPSTREAM tRNA:CR32273 INTRON prominin-like
3R	7763407	3R_7763407_SNP [dm3] 3R_11937685_SNP [dm6]	G	A	6.052e^-4	1	INTRON Cad87A
2L	14565548	2L_14565548_SNP [dm3] 2L_14565548_SNP [dm6]	T	A	6.054e^-4	1	INTERGENIC
X	16502441	X_16502441_SNP [dm3] X_16608408_SNP [dm6]	A	T	6.064e^-4	1	INTRON Nup153	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	16291477	3R_16291477_SNP [dm3] 3R_20465755_SNP [dm6]	T	G	6.065e^-4	1	INTRON Gfrl
2L	19205944	2L_19205944_SNP [dm3] 2L_19205944_SNP [dm6]	A	G	6.066e^-4	1	SYNONYMOUS_CODING drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	2672306	X_2672306_SNP [dm3] X_2778273_SNP [dm6]	G	T	6.067e^-4	1	INTRON kirre
3R	15824318	3R_15824318_SNP [dm3] 3R_19998596_SNP [dm6]	C	A	6.070e^-4	1	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	22003635	2L_22003635_SNP [dm3] 2L_22003635_SNP [dm6]	T	C	6.075e^-4	1	INTERGENIC
2R	14193503	2R_14193503_SNP [dm3] 2R_18305998_SNP [dm6]	G	A	6.087e^-4	1	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3R	12598570	3R_12598570_SNP [dm3] 3R_16772848_SNP [dm6]	T	C	6.093e^-4	1	INTRON bxd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	19308532	2R_19308532_SNP [dm3] 2R_23421009_SNP [dm6]	G	T	6.093e^-4	1	DOWNSTREAM CG9815 INTERGENIC
2R	17016595	2R_17016595_SNP [dm3] 2R_21129090_SNP [dm6]	G	C	6.098e^-4	1	SYNONYMOUS_CODING mago UPSTREAM CG4050 DOWNSTREAM Magi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	17039731	2L_17039731_SNP [dm3] 2L_17039731_SNP [dm6]	G	C	6.100e^-4	1	INTERGENIC
2L	4267520	2L_4267520_SNP [dm3] 2L_4267520_SNP [dm6]	T	A	6.101e^-4	1	INTERGENIC
3L	20171811	3L_20171811_SNP [dm3] 3L_20178711_SNP [dm6]	C	T	6.101e^-4	1	INTRON CG42674	TF binding site mE1_TFBS_inv
3L	14165617	3L_14165617_SNP [dm3] 3L_14172517_SNP [dm6]	T	A	6.106e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
3R	18160638	3R_18160638_SNP [dm3] 3R_22334916_SNP [dm6]	C	T	6.112e^-4	1	UTR_3_PRIME CG5388 UPSTREAM CG5391
3R	24263802	3R_24263802_SNP [dm3] 3R_28438080_SNP [dm6]	A	G	6.117e^-4	1	INTRON beat-VI
3L	4012212	3L_4012212_SNP [dm3] 3L_4012212_SNP [dm6]	A	G	6.123e^-4	1	INTERGENIC
3R	24263533	3R_24263533_SNP [dm3] 3R_28437811_SNP [dm6]	G	A	6.135e^-4	1	INTRON beat-VI
2L	7927233	2L_7927233_SNP [dm3] 2L_7927233_SNP [dm6]	C	A	6.144e^-4	1	INTRON Snoo
X	2949333	X_2949333_SNP [dm3] X_3055300_SNP [dm6]	G	C	6.153e^-4	1	INTRON kirre
3L	2525817	3L_2525817_SNP [dm3] 3L_2525817_SNP [dm6]	T	A	6.161e^-4	1	UTR_3_PRIME CG32295 INTRON Spn	TF binding site mE1_TFBS_HSA
3L	2525832	3L_2525832_SNP [dm3] 3L_2525832_SNP [dm6]	G	A	6.161e^-4	1	UTR_3_PRIME CG32295 INTRON Spn	TF binding site mE1_TFBS_HSA
3R	15093167	3R_15093167_SNP [dm3] 3R_19267445_SNP [dm6]	C	G	6.167e^-4	1	INTERGENIC
2L	18621368	2L_18621368_SNP [dm3] 2L_18621368_SNP [dm6]	C	T	6.173e^-4	1	INTRON MESR3	TF binding site mE1_TFBS_zfh1
2L	12643736	2L_12643736_SNP [dm3] 2L_12643736_SNP [dm6]	T	C	6.175e^-4	1	INTRON Ref2
3L	7456958	3L_7456958_SNP [dm3] 3L_7463858_SNP [dm6]	T	A	6.177e^-4	1	INTERGENIC
2L	19223430	2L_19223430_SNP [dm3] 2L_19223430_SNP [dm6]	G	T	6.182e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13711613	3L_13711613_SNP [dm3] 3L_13718513_SNP [dm6]	C	A	6.194e^-4	1	INTRON bru-3
3L	15265896	3L_15265896_SNP [dm3] 3L_15272796_SNP [dm6]	A	G	6.198e^-4	1	INTERGENIC
2L	14189445	2L_14189445_SNP [dm3] 2L_14189445_SNP [dm6]	A	C	6.198e^-4	1	INTRON Dyrk2
3R	14145724	3R_14145724_SNP [dm3] 3R_18320002_SNP [dm6]	A	C	6.206e^-4	1	INTRON CG31235
3R	20663172	3R_20663172_SNP [dm3] 3R_24837450_SNP [dm6]	A	C	6.207e^-4	1	INTRON sosie
X	9642416	X_9642416_SNP [dm3] X_9748383_SNP [dm6]	G	A	6.226e^-4	1	INTRON Sp1
2L	4456984	2L_4456984_SNP [dm3] 2L_4456984_SNP [dm6]	G	T	6.227e^-4	1	UPSTREAM Gs1l DOWNSTREAM RpL27A & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
X	8874768	X_8874768_SNP [dm3] X_8980735_SNP [dm6]	G	T	6.234e^-4	1	INTRON rdgA & 1 other
2L	7804151	2L_7804151_SNP [dm3] 2L_7804151_SNP [dm6]	G	T	6.248e^-4	1	UTR_3_PRIME cdc14 INTRON cdc14
3R	18179275	3R_18179275_SNP [dm3] 3R_22353553_SNP [dm6]	T	G	6.252e^-4	1	INTRON rdhB
3R	4150106	3R_4150106_SNP [dm3] 3R_8324384_SNP [dm6]	G	C	6.258e^-4	1	NON_SYNONYMOUS_CODING CG7443 INTRON Poxm
3L	2774782	3L_2774782_SNP [dm3] 3L_2774782_SNP [dm6]	C	T	6.263e^-4	1	SYNONYMOUS_CODING Atg2 UPSTREAM CG12093	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10547412	3R_10547412_SNP [dm3] 3R_14721690_SNP [dm6]	A	G	6.266e^-4	1	INTRON kibra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	2805283	3L_2805283_SNP [dm3] 3L_2805283_SNP [dm6]	C	G	6.274e^-4	1	INTRON CG43444
3R	17937434	3R_17937434_SNP [dm3] 3R_22111712_SNP [dm6]	G	A	6.280e^-4	1	INTERGENIC
3R	4854487	3R_4854487_SNP [dm3] 3R_9028765_SNP [dm6]	C	T	6.282e^-4	1	INTRON neur	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	12380968	X_12380968_SNP [dm3] X_12486935_SNP [dm6]	G	T	6.285e^-4	1	UPSTREAM Cpr11A INTERGENIC
3R	17536404	3R_17536404_SNP [dm3] 3R_21710682_SNP [dm6]	A	T	6.286e^-4	1	INTRON CG31176
3L	16503927	3L_16503927_SNP [dm3] 3L_16510827_SNP [dm6]	T	A	6.291e^-4	1	INTRON CG43373
3R	18158999	3R_18158999_SNP [dm3] 3R_22333277_SNP [dm6]	C	T	6.311e^-4	1	NON_SYNONYMOUS_CODING CG5391 DOWNSTREAM CG13862 & 1 other
2L	11849869	2L_11849869_DEL [dm3] 2L_11849869_DEL [dm6]	TTTTA	G	6.315e^-4	1	UPSTREAM Mal-B2 DOWNSTREAM Mal-B1 INTRON Pde1c
X	11563993	X_11563993_SNP [dm3] X_11669960_SNP [dm6]	A	C	6.315e^-4	1	INTRON Ptp10D
X	7584097	X_7584097_SNP [dm3] X_7690064_SNP [dm6]	A	T	6.321e^-4	1	INTRON CHES-1-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	5123656	3R_5123656_SNP [dm3] 3R_9297934_SNP [dm6]	A	G	6.322e^-4	1	INTRON CG8861
2L	964135	2L_964135_SNP [dm3] 2L_964135_SNP [dm6]	G	T	6.326e^-4	1	INTERGENIC
3L	11593274	3L_11593274_SNP [dm3] 3L_11600174_SNP [dm6]	A	G	6.327e^-4	1	UPSTREAM CG14137 INTRON CG7368

By genomic position
Variant impact
Gene name

se_AlcoholSens_E1 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results