DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.141e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_P	0.09711

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_P	4.9177	0.0855

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2030 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	2180717	3L_2180717_SNP [dm3] 3L_2180717_SNP [dm6]	G	A	1.150e^-8	0.012	INTERGENIC
3L	2180921	3L_2180921_SNP [dm3] 3L_2180921_SNP [dm6]	C	T	1.737e^-8	0.012	INTERGENIC
3L	2180898	3L_2180898_SNP [dm3] 3L_2180898_SNP [dm6]	A	C	1.843e^-8	0.012	INTERGENIC
3L	2480008	3L_2480008_SNP [dm3] 3L_2480008_SNP [dm6]	A	G	3.873e^-8	0.016	INTRON CG45186	TF binding site BDTNP1_TFBS_twi
2R	9739780	2R_9739780_SNP [dm3] 2R_13852275_SNP [dm6]	A	G	4.687e^-8	0.016	SYNONYMOUS_CODING CG30485 DOWNSTREAM CG6543
3L	2180902	3L_2180902_SNP [dm3] 3L_2180902_SNP [dm6]	A	G	5.255e^-8	0.016	INTERGENIC
3L	2180910	3L_2180910_SNP [dm3] 3L_2180910_SNP [dm6]	T	A	2.453e^-7	0.064	INTERGENIC
3L	2180505	3L_2180505_SNP [dm3] 3L_2180505_SNP [dm6]	G	A	2.735e^-7	0.064	INTERGENIC
3L	1591261	3L_1591261_SNP [dm3] 3L_1591261_SNP [dm6]	G	T	3.187e^-7	0.066	INTRON CG13917
3L	2181328	3L_2181328_SNP [dm3] 3L_2181328_SNP [dm6]	G	T	4.324e^-7	0.081	INTERGENIC
2R	18779392	2R_18779392_SNP [dm3] 2R_22891869_SNP [dm6]	A	G	5.782e^-7	0.099	INTRON MED23
2L	6804599	2L_6804599_SNP [dm3] 2L_6804599_SNP [dm6]	A	G	6.528e^-7	0.102	UTR_3_PRIME CG17375 DOWNSTREAM CG17375 & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	9737128	2R_9737128_DEL [dm3] 2R_13849623_DEL [dm6]	TGA	T	9.507e^-7	0.137	FRAME_SHIFT CG30484 UPSTREAM CG30485
3L	2480098	3L_2480098_SNP [dm3] 3L_2480098_SNP [dm6]	G	T	1.982e^-6	0.266	INTRON CG45186	TF binding site BDTNP1_TFBS_twi
3L	2480196	3L_2480196_SNP [dm3] 3L_2480196_SNP [dm6]	C	T	2.223e^-6	0.278	INTRON CG45186	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9971425	2L_9971425_SNP [dm3] 2L_9971425_SNP [dm6]	A	G	2.669e^-6	0.313	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18779081	2R_18779081_SNP [dm3] 2R_22891558_SNP [dm6]	C	T	3.883e^-6	0.396	SYNONYMOUS_CODING MED23	TF binding site mE1_TFBS_cad
2L	6804628	2L_6804628_SNP [dm3] 2L_6804628_SNP [dm6]	T	A	4.299e^-6	0.396	UTR_3_PRIME CG17375 DOWNSTREAM CG11236	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	5410101	X_5410101_SNP [dm3] X_5516068_SNP [dm6]	C	T	4.435e^-6	0.396	UPSTREAM CG12730 DOWNSTREAM CR45518 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	11299613	2R_11299613_SNP [dm3] 2R_15412108_SNP [dm6]	C	T	4.437e^-6	0.396	INTRON CG43729
2R	1369138	2R_1369138_SNP [dm3] 2R_5481633_SNP [dm6]	C	T	4.590e^-6	0.396	INTRON CG30440	transposable element FlyBase
2R	11299604	2R_11299604_SNP [dm3] 2R_15412099_SNP [dm6]	G	A	4.640e^-6	0.396	INTRON CG43729
2L	9584906	2L_9584906_SNP [dm3] 2L_9584906_SNP [dm6]	T	G	5.884e^-6	0.48	EXON CR43621	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	7391364	3L_7391364_SNP [dm3] 3L_7398264_SNP [dm6]	G	A	6.984e^-6	0.546	UPSTREAM CG8562 DOWNSTREAM CG32379 INTERGENIC	TF binding site mE1_TFBS_cad
2R	9739333	2R_9739333_SNP [dm3] 2R_13851828_SNP [dm6]	A	T	8.196e^-6	0.564	SYNONYMOUS_CODING CG30485
3R	1348683	3R_1348683_SNP [dm3] 3R_5522961_SNP [dm6]	G	A	8.240e^-6	0.564	INTRON Nmdar1 & 1 other EXON CR43845	TF binding site mE1_TFBS_cad
X	12979482	X_12979482_SNP [dm3] X_13085449_SNP [dm6]	G	A	8.242e^-6	0.564	INTRON hep
3L	2480321	3L_2480321_SNP [dm3] 3L_2480321_SNP [dm6]	G	A	8.419e^-6	0.564	INTRON CG45186	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2480238	3L_2480238_SNP [dm3] 3L_2480238_SNP [dm6]	A	C	9.039e^-6	0.585	INTRON CG45186	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24305099	3R_24305099_DEL [dm3] 3R_28479377_DEL [dm6]	TGT	A	9.641e^-6	0.603	INTERGENIC
3R	24294624	3R_24294624_SNP [dm3] 3R_28468902_SNP [dm6]	C	T	1.144e^-5	0.665	INTRON beat-VI
3R	24258906	3R_24258906_SNP [dm3] 3R_28433184_SNP [dm6]	G	A	1.176e^-5	0.665	INTRON beat-VI
2R	16813817	2R_16813817_SNP [dm3] 2R_20926312_SNP [dm6]	C	T	1.258e^-5	0.665	INTRON Rx
2R	9742901	2R_9742901_SNP [dm3] 2R_13855396_SNP [dm6]	T	C	1.275e^-5	0.665	SYNONYMOUS_CODING CG6553 DOWNSTREAM tum EXON CR44367
3L	12417471	3L_12417471_SNP [dm3] 3L_12424371_SNP [dm6]	T	A	1.289e^-5	0.665	INTRON toe	TF binding site mE1_TFBS_cad
X	12424599	X_12424599_SNP [dm3] X_12530566_SNP [dm6]	A	C	1.299e^-5	0.665	INTRON CG43921
X	16373113	X_16373113_SNP [dm3] X_16479080_SNP [dm6]	C	T	1.312e^-5	0.665	INTRON para
3R	24268846	3R_24268846_SNP [dm3] 3R_28443124_SNP [dm6]	T	C	1.430e^-5	0.701	INTRON beat-VI
2L	6804369	2L_6804369_SNP [dm3] 2L_6804369_SNP [dm6]	T	G	1.476e^-5	0.701	UTR_3_PRIME CG11236 & 1 other DOWNSTREAM CG17375	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2382771	3L_2382771_SNP [dm3] 3L_2382771_SNP [dm6]	C	T	1.495e^-5	0.701	INTRON CG45186	TF binding site mE1_TFBS_sens
2R	3656170	2R_3656170_SNP [dm3] 2R_7768665_SNP [dm6]	G	A	1.587e^-5	0.726	INTRON CG30497 & 1 other
2L	1024594	2L_1024594_SNP [dm3] 2L_1024594_SNP [dm6]	T	C	1.633e^-5	0.729	INTRON IA-2
2R	18964853	2R_18964853_SNP [dm3] 2R_23077330_SNP [dm6]	G	A	1.718e^-5	0.732	SYNONYMOUS_CODING Art7 DOWNSTREAM CG3085	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1029693	2L_1029693_SNP [dm3] 2L_1029693_SNP [dm6]	A	C	1.725e^-5	0.732	INTRON IA-2
2L	5538563	2L_5538563_SNP [dm3] 2L_5538563_SNP [dm6]	G	A	1.759e^-5	0.732	SYNONYMOUS_CODING CG14015 DOWNSTREAM Hel25E	TF binding site mE1_TFBS_chinmo
X	20232036	X_20232036_SNP [dm3] X_20361009_SNP [dm6]	T	A	1.795e^-5	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
X	8806039	X_8806039_SNP [dm3] X_8912006_SNP [dm6]	T	C	1.854e^-5	0.737	UPSTREAM rdgA INTRON rdgA
2L	6804615	2L_6804615_SNP [dm3] 2L_6804615_SNP [dm6]	A	C	2.064e^-5	0.737	UTR_3_PRIME CG17375 DOWNSTREAM CG17375 & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	2839229	3L_2839229_SNP [dm3] 3L_2839229_SNP [dm6]	T	A	2.095e^-5	0.737	INTRON CG43444	TF binding site BDTNP1_TFBS_dl
3R	7963558	3R_7963558_SNP [dm3] 3R_12137836_SNP [dm6]	T	G	2.117e^-5	0.737	DOWNSTREAM dpr15 INTERGENIC
2R	9738643	2R_9738643_SNP [dm3] 2R_13851138_SNP [dm6]	G	A	2.120e^-5	0.737	SYNONYMOUS_CODING CG30485	TF binding site mE1_TFBS_HSA
2L	5538967	2L_5538967_SNP [dm3] 2L_5538967_SNP [dm6]	T	G	2.120e^-5	0.737	SYNONYMOUS_CODING CG14015 DOWNSTREAM Hel25E	TF binding site mE1_TFBS_chinmo
2R	9738596	2R_9738596_SNP [dm3] 2R_13851091_SNP [dm6]	C	T	2.122e^-5	0.737	NON_SYNONYMOUS_CODING CG30485	TF binding site mE1_TFBS_HSA
2R	9739360	2R_9739360_SNP [dm3] 2R_13851855_SNP [dm6]	G	A	2.122e^-5	0.737	SYNONYMOUS_CODING CG30485
X	20234088	X_20234088_DEL [dm3] X_20363061_DEL [dm6]	ACACAATAATAAATGTATA...	A	2.210e^-5	0.742	INTERGENIC
2L	1024665	2L_1024665_SNP [dm3] 2L_1024665_SNP [dm6]	C	G	2.251e^-5	0.742	INTRON IA-2
2R	9739396	2R_9739396_SNP [dm3] 2R_13851891_SNP [dm6]	C	A	2.321e^-5	0.742	SYNONYMOUS_CODING CG30485
2L	9124521	2L_9124521_SNP [dm3] 2L_9124521_SNP [dm6]	T	A	2.371e^-5	0.742	DOWNSTREAM CR44615 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13336466	2L_13336466_SNP [dm3] 2L_13336466_SNP [dm6]	C	G	2.452e^-5	0.742	INTERGENIC	TF binding site mE1_TFBS_cad
2R	18000927	2R_18000927_SNP [dm3] 2R_22113422_SNP [dm6]	C	G	2.523e^-5	0.742	UPSTREAM CG30280 & 1 other INTRON Vrp1
2L	2721456	2L_2721456_SNP [dm3] 2L_2721456_SNP [dm6]	C	T	2.528e^-5	0.742	INTERGENIC
2L	8312006	2L_8312006_SNP [dm3] 2L_8312006_SNP [dm6]	C	A	2.543e^-5	0.742	UPSTREAM CG7810 INTRON CG7806	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	24304860	3R_24304860_SNP [dm3] 3R_28479138_SNP [dm6]	C	T	2.565e^-5	0.742	INTERGENIC
3R	24258918	3R_24258918_SNP [dm3] 3R_28433196_SNP [dm6]	G	A	2.611e^-5	0.742	INTRON beat-VI
2R	9738046	2R_9738046_SNP [dm3] 2R_13850541_SNP [dm6]	G	A	2.628e^-5	0.742	SYNONYMOUS_CODING CG30485 DOWNSTREAM CG30484
3R	24305365	3R_24305365_SNP [dm3] 3R_28479643_SNP [dm6]	G	C	2.729e^-5	0.742	INTERGENIC
2L	1024679	2L_1024679_SNP [dm3] 2L_1024679_SNP [dm6]	A	T	2.818e^-5	0.742	INTRON IA-2
3L	4485154	3L_4485154_DEL [dm3] 3L_4485154_DEL [dm6]	AC	A	2.826e^-5	0.742	DOWNSTREAM CG13722 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
2R	9737639	2R_9737639_SNP [dm3] 2R_13850134_SNP [dm6]	G	T	2.859e^-5	0.742	NON_SYNONYMOUS_CODING CG30485 DOWNSTREAM CG30484
2R	9749338	2R_9749338_SNP [dm3] 2R_13861833_SNP [dm6]	G	T	2.905e^-5	0.742	SYNONYMOUS_CODING CG16935 UPSTREAM CG13344	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_ttk
3R	1325269	3R_1325269_SNP [dm3] 3R_5499547_SNP [dm6]	C	A	2.914e^-5	0.742	UPSTREAM CG31547 INTRON CG31547
X	12424758	X_12424758_DEL [dm3] X_12530725_DEL [dm6]	TGG	T	2.948e^-5	0.742	INTRON CG43921
2L	1024601	2L_1024601_SNP [dm3] 2L_1024601_SNP [dm6]	G	C	2.953e^-5	0.742	INTRON IA-2
X	2264538	X_2264538_SNP [dm3] X_2370505_SNP [dm6]	G	A	2.962e^-5	0.742	NON_SYNONYMOUS_CODING PsGEF UTR_3_PRIME PsGEF	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	2264574	X_2264574_SNP [dm3] X_2370541_SNP [dm6]	G	A	2.975e^-5	0.742	NON_SYNONYMOUS_CODING PsGEF UTR_3_PRIME PsGEF	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9738660	2R_9738660_SNP [dm3] 2R_13851155_SNP [dm6]	A	T	3.033e^-5	0.742	NON_SYNONYMOUS_CODING CG30485	TF binding site mE1_TFBS_HSA
2L	10536112	2L_10536112_SNP [dm3] 2L_10536112_SNP [dm6]	T	C	3.046e^-5	0.742	SYNONYMOUS_CODING CG18302
2R	9745022	2R_9745022_SNP [dm3] 2R_13857517_SNP [dm6]	A	C	3.086e^-5	0.742	SYNONYMOUS_CODING tum	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9738462	2R_9738462_SNP [dm3] 2R_13850957_SNP [dm6]	C	T	3.170e^-5	0.753	NON_SYNONYMOUS_CODING CG30485
3R	2222027	3R_2222027_SNP [dm3] 3R_6396305_SNP [dm6]	C	T	3.238e^-5	0.759	INTRON Dmtn
X	14589175	X_14589175_SNP [dm3] X_14695142_SNP [dm6]	T	G	3.330e^-5	0.767	INTRON NetB
3R	24253132	3R_24253132_SNP [dm3] 3R_28427410_SNP [dm6]	G	A	3.395e^-5	0.767	INTRON beat-VI
2L	9287029	2L_9287029_SNP [dm3] 2L_9287029_SNP [dm6]	T	C	3.432e^-5	0.767	INTRON Ggamma30A
3L	1139314	3L_1139314_SNP [dm3] 3L_1139314_SNP [dm6]	A	T	3.468e^-5	0.767	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	24253795	3R_24253795_SNP [dm3] 3R_28428073_SNP [dm6]	A	T	3.478e^-5	0.767	INTRON beat-VI
2L	11930045	2L_11930045_SNP [dm3] 2L_11930045_SNP [dm6]	C	T	3.515e^-5	0.767	INTERGENIC
3L	441069	3L_441069_SNP [dm3] 3L_441069_SNP [dm6]	A	C	3.608e^-5	0.778	UTR_5_PRIME klar INTRON klar	TF binding site mE1_TFBS_bab1 mE1_TFBS_Trl
2L	13108667	2L_13108667_SNP [dm3] 2L_13108667_SNP [dm6]	T	C	3.670e^-5	0.781	INTRON CG5142
3R	24304857	3R_24304857_SNP [dm3] 3R_28479135_SNP [dm6]	A	G	3.706e^-5	0.781	INTERGENIC
3R	11030744	3R_11030744_SNP [dm3] 3R_15205022_SNP [dm6]	G	C	3.855e^-5	0.803	INTRON Spn88Ea
X	17686695	X_17686695_SNP [dm3] X_17792662_SNP [dm6]	C	G	4.020e^-5	0.816	INTRON OdsH
3L	20617586	3L_20617586_SNP [dm3] 3L_20624486_SNP [dm6]	C	T	4.038e^-5	0.816	EXON CR44684	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12682158	2R_12682158_SNP [dm3] 2R_16794653_SNP [dm6]	G	A	4.047e^-5	0.816	SYNONYMOUS_CODING CG15615
3L	2013370	3L_2013370_SNP [dm3] 3L_2013370_SNP [dm6]	G	A	4.151e^-5	0.828	INTERGENIC
X	3320795	X_3320795_SNP [dm3] X_3426762_SNP [dm6]	A	G	4.205e^-5	0.83	DOWNSTREAM tRNA:CR32493 INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	6860664	2L_6860664_SNP [dm3] 2L_6860664_SNP [dm6]	C	T	4.282e^-5	0.831	SYNONYMOUS_CODING l_2_k09022 DOWNSTREAM Nha1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1024627	2L_1024627_SNP [dm3] 2L_1024627_SNP [dm6]	T	A	4.298e^-5	0.831	INTRON IA-2
2L	4199891	2L_4199891_SNP [dm3] 2L_4199891_SNP [dm6]	C	T	4.341e^-5	0.831	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	12041639	2R_12041639_INS [dm3] 2R_16154134_INS [dm6]	A	AA	4.414e^-5	0.834	INTRON lbk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2843989	2L_2843989_SNP [dm3] 2L_2843989_SNP [dm6]	T	C	4.588e^-5	0.834	SYNONYMOUS_CODING CG18558 DOWNSTREAM CG18557	TF binding site mE1_TFBS_cad
2R	11299467	2R_11299467_SNP [dm3] 2R_15411962_SNP [dm6]	T	C	4.630e^-5	0.834	INTRON CG43729
2L	11937433	2L_11937433_SNP [dm3] 2L_11937433_SNP [dm6]	A	C	4.742e^-5	0.834	NON_SYNONYMOUS_CODING Or33b UPSTREAM Or33c
3L	4099245	3L_4099245_SNP [dm3] 3L_4099245_SNP [dm6]	A	T	4.807e^-5	0.834	INTRON CG14995	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2L	6472425	2L_6472425_SNP [dm3] 2L_6472425_SNP [dm6]	A	T	4.860e^-5	0.834	UPSTREAM mmy INTRON mmy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24253800	3R_24253800_SNP [dm3] 3R_28428078_SNP [dm6]	C	T	4.861e^-5	0.834	INTRON beat-VI
2L	8306110	2L_8306110_SNP [dm3] 2L_8306110_SNP [dm6]	T	C	4.889e^-5	0.834	SYNONYMOUS_CODING CG7840 DOWNSTREAM Scgalpha & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2185130	3L_2185130_SNP [dm3] 3L_2185130_SNP [dm6]	G	C	4.890e^-5	0.834	UPSTREAM CG13810 INTERGENIC
3L	7402630	3L_7402630_SNP [dm3] 3L_7409530_SNP [dm6]	C	T	4.967e^-5	0.834	INTRON CR44525 EXON CR44525
2R	13382917	2R_13382917_SNP [dm3] 2R_17495412_SNP [dm6]	C	T	5.068e^-5	0.834	SYNONYMOUS_CODING CG30103	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6237439	2L_6237439_SNP [dm3] 2L_6237439_SNP [dm6]	T	A	5.110e^-5	0.834	INTERGENIC
2R	9755036	2R_9755036_SNP [dm3] 2R_13867531_SNP [dm6]	T	A	5.111e^-5	0.834	INTRON shot
2R	3795250	2R_3795250_SNP [dm3] 2R_7907745_SNP [dm6]	A	G	5.246e^-5	0.834	INTRON CG30377
2L	1024736	2L_1024736_SNP [dm3] 2L_1024736_SNP [dm6]	A	T	5.331e^-5	0.834	INTRON IA-2
3R	1282648	3R_1282648_SNP [dm3] 3R_5456926_SNP [dm6]	T	C	5.335e^-5	0.834	UTR_3_PRIME CG14669
2L	4199960	2L_4199960_SNP [dm3] 2L_4199960_SNP [dm6]	G	A	5.392e^-5	0.834	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6389829	3L_6389829_SNP [dm3] 3L_6396729_SNP [dm6]	A	T	5.407e^-5	0.834	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	1417642	3L_1417642_SNP [dm3] 3L_1417642_SNP [dm6]	C	T	5.418e^-5	0.834	SYNONYMOUS_CODING FucTD INTRON Ptp61F	TF binding site mE1_TFBS_chinmo
2L	6860649	2L_6860649_SNP [dm3] 2L_6860649_SNP [dm6]	A	G	5.431e^-5	0.834	SYNONYMOUS_CODING l_2_k09022 DOWNSTREAM Nha1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9738599	2R_9738599_SNP [dm3] 2R_13851094_SNP [dm6]	T	A	5.432e^-5	0.834	NON_SYNONYMOUS_CODING CG30485	TF binding site mE1_TFBS_HSA
2R	17933915	2R_17933915_SNP [dm3] 2R_22046410_SNP [dm6]	C	A	5.467e^-5	0.834	INTERGENIC
3L	7963025	3L_7963025_SNP [dm3] 3L_7969925_SNP [dm6]	A	C	5.687e^-5	0.834	UPSTREAM RNaseX25 INTERGENIC	TF binding site mE1_TFBS_inv
2L	8311963	2L_8311963_SNP [dm3] 2L_8311963_SNP [dm6]	T	C	5.730e^-5	0.834	UPSTREAM CG7810 INTRON CG7806	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	16291477	3R_16291477_SNP [dm3] 3R_20465755_SNP [dm6]	T	G	5.736e^-5	0.834	INTRON Gfrl
2L	1024651	2L_1024651_SNP [dm3] 2L_1024651_SNP [dm6]	G	T	5.755e^-5	0.834	INTRON IA-2
3R	24258924	3R_24258924_SNP [dm3] 3R_28433202_SNP [dm6]	C	T	5.778e^-5	0.834	INTRON beat-VI
3L	2180082	3L_2180082_SNP [dm3] 3L_2180082_SNP [dm6]	A	G	5.788e^-5	0.834	INTERGENIC
3L	13246220	3L_13246220_SNP [dm3] 3L_13253120_SNP [dm6]	C	G	5.794e^-5	0.834	INTRON caps	TF binding site mE1_TFBS_inv
3R	26643073	3R_26643073_SNP [dm3] 3R_30817351_SNP [dm6]	T	G	5.802e^-5	0.834	UPSTREAM cindr INTRON cindr	TF binding site mE1_TFBS_cad
X	13871056	X_13871056_SNP [dm3] X_13977023_SNP [dm6]	T	C	5.970e^-5	0.834	INTRON mamo
3L	5054994	3L_5054994_DEL [dm3] 3L_5054994_DEL [dm6]	GCTGTTGACTTCATTTGTTA...	G	6.024e^-5	0.834	INTRON Con
2R	19974982	2R_19974982_SNP [dm3] 2R_24087459_SNP [dm6]	C	T	6.056e^-5	0.834	INTRON snama	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	2184080	3L_2184080_SNP [dm3] 3L_2184080_SNP [dm6]	A	G	6.072e^-5	0.834	INTERGENIC
2L	9124590	2L_9124590_SNP [dm3] 2L_9124590_SNP [dm6]	G	T	6.076e^-5	0.834	DOWNSTREAM CR44615 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23909971	3R_23909971_DEL [dm3] 3R_28084249_DEL [dm6]	GACTATGCTACCCG...	G	6.085e^-5	0.834	INTRON CG34362
3L	7963028	3L_7963028_SNP [dm3] 3L_7969928_SNP [dm6]	A	T	6.135e^-5	0.834	UPSTREAM RNaseX25 INTERGENIC	TF binding site mE1_TFBS_inv
X	1882603	X_1882603_SNP [dm3] X_1988570_SNP [dm6]	G	T	6.147e^-5	0.834	INTRON Hr4	TF binding site mE1_TFBS_Trl
X	5038665	X_5038665_SNP [dm3] X_5144632_SNP [dm6]	T	C	6.156e^-5	0.834	INTRON rg & 1 other
3L	6392603	3L_6392603_SNP [dm3] 3L_6399503_SNP [dm6]	A	C	6.161e^-5	0.834	INTERGENIC	TF binding site BDTNP1_TFBS_z
2L	16477281	2L_16477281_SNP [dm3] 2L_16477281_SNP [dm6]	A	G	6.182e^-5	0.834	INTRON dac	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	4099244	3L_4099244_SNP [dm3] 3L_4099244_SNP [dm6]	C	A	6.223e^-5	0.834	INTRON CG14995	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3R	23892522	3R_23892522_SNP [dm3] 3R_28066800_SNP [dm6]	C	T	6.439e^-5	0.857	INTRON CG34362
2L	6859205	2L_6859205_SNP [dm3] 2L_6859205_SNP [dm6]	T	A	6.593e^-5	0.857	SYNONYMOUS_CODING l_2_k09022	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	9452389	2L_9452389_SNP [dm3] 2L_9452389_SNP [dm6]	T	G	6.621e^-5	0.857	INTRON numb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
2R	19301889	2R_19301889_SNP [dm3] 2R_23414366_SNP [dm6]	C	T	6.625e^-5	0.857	INTRON CG9812
3L	5054993	3L_5054993_SNP [dm3] 3L_5054993_SNP [dm6]	G	T	6.626e^-5	0.857	INTRON Con
2L	12556065	2L_12556065_SNP [dm3] 2L_12556065_SNP [dm6]	G	T	6.764e^-5	0.863	INTERGENIC
2L	1024487	2L_1024487_SNP [dm3] 2L_1024487_SNP [dm6]	A	G	6.790e^-5	0.863	INTRON IA-2	insulator Insulator_Class_II.mE01
2R	11299449	2R_11299449_SNP [dm3] 2R_15411944_SNP [dm6]	T	A	6.806e^-5	0.863	INTRON CG43729
3R	1313869	3R_1313869_SNP [dm3] 3R_5488147_SNP [dm6]	G	A	6.890e^-5	0.864	SYNONYMOUS_CODING CG31550 UTR_3_PRIME CG31550	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10939556	3R_10939556_SNP [dm3] 3R_15113834_SNP [dm6]	T	A	6.920e^-5	0.864	INTRON CG42788
X	15170953	X_15170953_SNP [dm3] X_15276920_SNP [dm6]	C	G	6.958e^-5	0.864	INTERGENIC
2R	9462409	2R_9462409_DEL [dm3] 2R_13574904_DEL [dm6]	GGG	G	7.010e^-5	0.864	UPSTREAM CR44365 & 1 other INTERGENIC
3R	24304785	3R_24304785_SNP [dm3] 3R_28479063_SNP [dm6]	G	A	7.045e^-5	0.864	INTERGENIC
2L	10936883	2L_10936883_SNP [dm3] 2L_10936883_SNP [dm6]	C	A	7.092e^-5	0.864	UPSTREAM CG14072 INTRON dpr2 & 1 other
2R	19973965	2R_19973965_SNP [dm3] 2R_24086442_SNP [dm6]	T	C	7.212e^-5	0.865	UPSTREAM snama DOWNSTREAM CG16786 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
X	14589207	X_14589207_SNP [dm3] X_14695174_SNP [dm6]	T	C	7.268e^-5	0.865	INTRON NetB
2L	13943212	2L_13943212_SNP [dm3] 2L_13943212_SNP [dm6]	G	A	7.293e^-5	0.865	INTRON Ance-3
3R	24253924	3R_24253924_SNP [dm3] 3R_28428202_SNP [dm6]	C	T	7.324e^-5	0.865	INTRON beat-VI
2L	10936928	2L_10936928_SNP [dm3] 2L_10936928_SNP [dm6]	A	C	7.346e^-5	0.865	UPSTREAM CG14072 INTRON dpr2 & 1 other
X	17686698	X_17686698_SNP [dm3] X_17792665_SNP [dm6]	G	A	7.417e^-5	0.865	INTRON OdsH
3L	4099237	3L_4099237_SNP [dm3] 3L_4099237_SNP [dm6]	T	C	7.521e^-5	0.865	INTRON CG14995	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3L	7399148	3L_7399148_INS [dm3] 3L_7406048_INS [dm6]	G	GAGGATG	7.528e^-5	0.865	UPSTREAM pncr015:3L INTERGENIC
3L	6392617	3L_6392617_SNP [dm3] 3L_6399517_SNP [dm6]	G	A	7.554e^-5	0.865	INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	1310236	3R_1310236_SNP [dm3] 3R_5484514_SNP [dm6]	C	T	7.634e^-5	0.865	NON_SYNONYMOUS_CODING Hcs UPSTREAM ksr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_ttk
X	18987154	X_18987154_SNP [dm3] X_19093121_SNP [dm6]	G	T	7.675e^-5	0.865	INTERGENIC
2L	3354194	2L_3354194_SNP [dm3] 2L_3354194_SNP [dm6]	A	C	7.730e^-5	0.865	UTR_5_PRIME E23 INTRON E23
2R	8432275	2R_8432275_SNP [dm3] 2R_12544770_SNP [dm6]	A	C	7.743e^-5	0.865	UPSTREAM CG33752 INTRON fra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1310233	3R_1310233_SNP [dm3] 3R_5484511_SNP [dm6]	A	G	7.819e^-5	0.865	NON_SYNONYMOUS_CODING Hcs UPSTREAM ksr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_ttk
2R	1369052	2R_1369052_SNP [dm3] 2R_5481547_SNP [dm6]	A	C	7.904e^-5	0.865	INTRON CG30440	transposable element FlyBase
3L	6392417	3L_6392417_SNP [dm3] 3L_6399317_SNP [dm6]	C	G	7.949e^-5	0.865	INTERGENIC	TF binding site BDTNP1_TFBS_z
2L	4669815	2L_4669815_SNP [dm3] 2L_4669815_SNP [dm6]	C	T	8.041e^-5	0.865	INTERGENIC
3R	24253793	3R_24253793_SNP [dm3] 3R_28428071_SNP [dm6]	G	C	8.053e^-5	0.865	INTRON beat-VI
3L	1141603	3L_1141603_SNP [dm3] 3L_1141603_SNP [dm6]	T	A	8.155e^-5	0.865	UTR_3_PRIME bab2
3L	1141672	3L_1141672_DEL [dm3] 3L_1141672_DEL [dm6]	GTGTGTTTTACG...	G	8.155e^-5	0.865	UTR_3_PRIME bab2
2L	8311191	2L_8311191_SNP [dm3] 2L_8311191_SNP [dm6]	A	G	8.184e^-5	0.865	UTR_5_PRIME CG7810 UPSTREAM CG7806	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2R	9747579	2R_9747579_SNP [dm3] 2R_13860074_SNP [dm6]	C	T	8.195e^-5	0.865	SYNONYMOUS_CODING Uba3 DOWNSTREAM CG16935	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12546780	2L_12546780_SNP [dm3] 2L_12546780_SNP [dm6]	G	A	8.224e^-5	0.865	UPSTREAM bun INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	11030691	3R_11030691_DEL [dm3] 3R_15204969_DEL [dm6]	AGAATTGTTGTAAACAATCA...	T	8.254e^-5	0.865	INTRON Spn88Ea
2L	5537586	2L_5537586_SNP [dm3] 2L_5537586_SNP [dm6]	C	T	8.350e^-5	0.865	SYNONYMOUS_CODING CG14015 UPSTREAM tomb	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	9773887	X_9773887_SNP [dm3] X_9879854_SNP [dm6]	G	T	8.420e^-5	0.865	UPSTREAM CG9686 DOWNSTREAM CG1468 INTERGENIC
2R	11299424	2R_11299424_SNP [dm3] 2R_15411919_SNP [dm6]	C	G	8.424e^-5	0.865	INTRON CG43729
2R	17933917	2R_17933917_SNP [dm3] 2R_22046412_SNP [dm6]	A	G	8.444e^-5	0.865	INTERGENIC
3R	1261944	3R_1261944_SNP [dm3] 3R_5436222_SNP [dm6]	A	C	8.450e^-5	0.865	INTRON CG14669
2L	12250832	2L_12250832_SNP [dm3] 2L_12250832_SNP [dm6]	C	T	8.533e^-5	0.865	INTRON aret
3R	1310253	3R_1310253_SNP [dm3] 3R_5484531_SNP [dm6]	G	A	8.608e^-5	0.865	SYNONYMOUS_CODING Hcs UPSTREAM ksr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_ttk
3L	2339131	3L_2339131_SNP [dm3] 3L_2339131_SNP [dm6]	G	A	8.674e^-5	0.865	INTRON MsR1
3L	2180062	3L_2180062_SNP [dm3] 3L_2180062_SNP [dm6]	G	C	8.735e^-5	0.865	INTERGENIC
3L	1141699	3L_1141699_INS [dm3] 3L_1141699_INS [dm6]	T	TTTTTT	8.824e^-5	0.865	UTR_3_PRIME bab2
3L	2186719	3L_2186719_SNP [dm3] 3L_2186719_SNP [dm6]	C	T	8.841e^-5	0.865	SYNONYMOUS_CODING CG13810	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21173466	3R_21173466_SNP [dm3] 3R_25347744_SNP [dm6]	C	G	8.849e^-5	0.865	SYNONYMOUS_CODING Fur1 UPSTREAM tobi
2R	16025734	2R_16025734_SNP [dm3] 2R_20138229_SNP [dm6]	G	C	8.856e^-5	0.865	DOWNSTREAM CR44635 EXON CR44636
3R	20376518	3R_20376518_SNP [dm3] 3R_24550796_SNP [dm6]	G	C	8.866e^-5	0.865	INTRON Esyt2
2L	8311892	2L_8311892_SNP [dm3] 2L_8311892_SNP [dm6]	G	A	8.943e^-5	0.865	SYNONYMOUS_CODING CG7806 UPSTREAM CG7810	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	7479364	3L_7479364_SNP [dm3] 3L_7486264_SNP [dm6]	T	C	8.948e^-5	0.865	SYNONYMOUS_CODING mthl6
X	5196879	X_5196879_SNP [dm3] X_5302846_SNP [dm6]	G	A	9.031e^-5	0.865	UTR_3_PRIME CG42749 DOWNSTREAM CG3323 INTRON CG42749
2R	19974844	2R_19974844_SNP [dm3] 2R_24087321_SNP [dm6]	A	T	9.038e^-5	0.865	INTRON snama	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	21173469	3R_21173469_SNP [dm3] 3R_25347747_SNP [dm6]	A	G	9.218e^-5	0.873	SYNONYMOUS_CODING Fur1 UPSTREAM tobi
2L	1024608	2L_1024608_SNP [dm3] 2L_1024608_SNP [dm6]	C	T	9.234e^-5	0.873	INTRON IA-2
3L	2538015	3L_2538015_SNP [dm3] 3L_2538015_SNP [dm6]	G	C	9.435e^-5	0.873	INTRON Spn
3L	2184795	3L_2184795_SNP [dm3] 3L_2184795_SNP [dm6]	A	T	9.437e^-5	0.873	INTERGENIC
3L	10636950	3L_10636950_SNP [dm3] 3L_10643850_SNP [dm6]	A	G	9.491e^-5	0.873	NON_SYNONYMOUS_CODING CG14153 DOWNSTREAM CG14154 INTRON CG32066
3L	21980985	3L_21980985_SNP [dm3] 3L_21987885_SNP [dm6]	A	G	9.542e^-5	0.873	DOWNSTREAM Act79B INTERGENIC
3L	10631716	3L_10631716_SNP [dm3] 3L_10638616_SNP [dm6]	C	T	9.547e^-5	0.873	SYNONYMOUS_CODING CG8009 UPSTREAM E_z_	TF binding site BDTNP1_TFBS_Med
3L	4712218	3L_4712218_SNP [dm3] 3L_4712218_SNP [dm6]	G	T	9.651e^-5	0.873	INTRON RhoGEF64C
2L	2292315	2L_2292315_SNP [dm3] 2L_2292315_SNP [dm6]	A	G	9.660e^-5	0.873	INTERGENIC
X	9739881	X_9739881_SNP [dm3] X_9845848_SNP [dm6]	C	T	9.683e^-5	0.873	INTRON CG32698
2R	9742426	2R_9742426_SNP [dm3] 2R_13854921_SNP [dm6]	A	T	9.756e^-5	0.873	UPSTREAM CG6543 INTRON CG6553 EXON CR44367
3L	7397251	3L_7397251_INS [dm3] 3L_7404151_INS [dm6]	A	AT	9.797e^-5	0.873	UTR_5_PRIME CG8560 UPSTREAM CG8560
2R	19295991	2R_19295991_SNP [dm3] 2R_23408468_SNP [dm6]	C	G	9.826e^-5	0.873	INTERGENIC
X	18365242	X_18365242_SNP [dm3] X_18471209_SNP [dm6]	C	T	9.952e^-5	0.873	INTRON CG32547
3L	2149091	3L_2149091_SNP [dm3] 3L_2149091_SNP [dm6]	G	T	9.973e^-5	0.873	INTRON zormin
3R	13278988	3R_13278988_SNP [dm3] 3R_17453266_SNP [dm6]	T	C	9.990e^-5	0.873	INTERGENIC
2R	7392761	2R_7392761_SNP [dm3] 2R_11505256_SNP [dm6]	A	C	1.004e^-4	0.873	INTRON inv
3R	1310551	3R_1310551_SNP [dm3] 3R_5484829_SNP [dm6]	T	A	1.004e^-4	0.873	SYNONYMOUS_CODING Hcs UPSTREAM ksr & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_ttk
X	20224179	X_20224179_DEL [dm3] X_20353152_DEL [dm6]	TGGCTG	T	1.005e^-4	0.873	INTERGENIC
2L	4197760	2L_4197760_SNP [dm3] 2L_4197760_SNP [dm6]	C	T	1.009e^-4	0.873	UPSTREAM CG3714 DOWNSTREAM ft INTRON CG3714	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	5230114	X_5230114_SNP [dm3] X_5336081_SNP [dm6]	G	A	1.014e^-4	0.873	INTERGENIC
2L	10936922	2L_10936922_SNP [dm3] 2L_10936922_SNP [dm6]	A	G	1.020e^-4	0.873	UPSTREAM CG14072 INTRON dpr2 & 1 other
X	5230116	X_5230116_SNP [dm3] X_5336083_SNP [dm6]	T	C	1.022e^-4	0.873	INTERGENIC
2R	16028530	2R_16028530_SNP [dm3] 2R_20141025_SNP [dm6]	A	G	1.024e^-4	0.873	INTERGENIC
2L	10457748	2L_10457748_SNP [dm3] 2L_10457748_SNP [dm6]	G	A	1.051e^-4	0.888	START_GAINED LM408 UTR_5_PRIME LM408 UPSTREAM CG5322	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	16085083	X_16085083_SNP [dm3] X_16191050_SNP [dm6]	T	A	1.055e^-4	0.888	DOWNSTREAM mir-985 INTERGENIC
X	9775514	X_9775514_SNP [dm3] X_9881481_SNP [dm6]	T	G	1.059e^-4	0.888	UPSTREAM CG9689 DOWNSTREAM CG9686 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	493660	3L_493660_SNP [dm3] 3L_493660_SNP [dm6]	G	C	1.066e^-4	0.888	INTRON klar
2L	9286266	2L_9286266_SNP [dm3] 2L_9286266_SNP [dm6]	A	G	1.067e^-4	0.888	INTRON Ggamma30A
3L	7390694	3L_7390694_SNP [dm3] 3L_7397594_SNP [dm6]	G	A	1.070e^-4	0.888	UPSTREAM CG8562 INTRON CG32379
X	20232034	X_20232034_SNP [dm3] X_20361007_SNP [dm6]	A	T	1.075e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
2R	16254295	2R_16254295_SNP [dm3] 2R_20366790_SNP [dm6]	G	A	1.090e^-4	0.897	INTERGENIC
3R	24290900	3R_24290900_SNP [dm3] 3R_28465178_SNP [dm6]	C	T	1.103e^-4	0.903	INTRON beat-VI
3L	2184905	3L_2184905_SNP [dm3] 3L_2184905_SNP [dm6]	G	A	1.121e^-4	0.903	INTERGENIC
3R	24344637	3R_24344637_SNP [dm3] 3R_28518915_SNP [dm6]	T	C	1.125e^-4	0.903	DOWNSTREAM CG31051 INTRON Dhc98D	TF binding site mE1_TFBS_chinmo
3L	665324	3L_665324_SNP [dm3] 3L_665324_SNP [dm6]	T	C	1.125e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_sens
3L	525686	3L_525686_DEL [dm3] 3L_525686_DEL [dm6]	CC	C	1.125e^-4	0.903	INTRON klar
3R	24253351	3R_24253351_SNP [dm3] 3R_28427629_SNP [dm6]	A	C	1.129e^-4	0.903	INTRON beat-VI
3L	5044494	3L_5044494_SNP [dm3] 3L_5044494_SNP [dm6]	G	A	1.141e^-4	0.903	INTRON Con
2R	17161945	2R_17161945_SNP [dm3] 2R_21274440_SNP [dm6]	A	G	1.152e^-4	0.903	INTRON Rgk3
3R	650842	3R_650842_SNP [dm3] 3R_4825120_SNP [dm6]	T	C	1.154e^-4	0.903	INTERGENIC
2R	19297519	2R_19297519_SNP [dm3] 2R_23409996_SNP [dm6]	C	T	1.160e^-4	0.903	INTERGENIC
2R	9745877	2R_9745877_SNP [dm3] 2R_13858372_SNP [dm6]	C	A	1.168e^-4	0.903	UPSTREAM Uba3 INTRON tum	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9746609	2R_9746609_SNP [dm3] 2R_13859104_SNP [dm6]	C	T	1.173e^-4	0.903	NON_SYNONYMOUS_CODING Uba3 UPSTREAM tum	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	1138203	3L_1138203_SNP [dm3] 3L_1138203_SNP [dm6]	A	T	1.176e^-4	0.903	INTERGENIC
2R	15534695	2R_15534695_SNP [dm3] 2R_19647190_SNP [dm6]	G	A	1.180e^-4	0.903	SYNONYMOUS_CODING CG15905	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	5951498	2R_5951498_SNP [dm3] 2R_10063993_SNP [dm6]	G	A	1.189e^-4	0.903	SYNONYMOUS_CODING CG2292 DOWNSTREAM magu
3L	11698510	3L_11698510_SNP [dm3] 3L_11705410_SNP [dm6]	C	G	1.190e^-4	0.903	INTRON CG11658
3L	4099236	3L_4099236_SNP [dm3] 3L_4099236_SNP [dm6]	C	A	1.193e^-4	0.903	INTRON CG14995	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2L	1025674	2L_1025674_SNP [dm3] 2L_1025674_SNP [dm6]	C	G	1.200e^-4	0.903	DOWNSTREAM CG4375 INTRON IA-2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	20239955	X_20239955_SNP [dm3] X_20368928_SNP [dm6]	G	T	1.203e^-4	0.903	INTERGENIC
3R	19017358	3R_19017358_SNP [dm3] 3R_23191636_SNP [dm6]	A	G	1.209e^-4	0.903	UPSTREAM cnc INTRON cnc	TF binding site BDTNP1_TFBS_z
3R	10940261	3R_10940261_SNP [dm3] 3R_15114539_SNP [dm6]	T	A	1.210e^-4	0.903	INTRON CG42788
2L	9346905	2L_9346905_SNP [dm3] 2L_9346905_SNP [dm6]	T	C	1.210e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	1146605	3L_1146605_SNP [dm3] 3L_1146605_SNP [dm6]	T	C	1.214e^-4	0.903	INTRON bab2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6091248	2L_6091248_SNP [dm3] 2L_6091248_SNP [dm6]	A	T	1.214e^-4	0.903	UPSTREAM Kr-h1 & 1 other INTRON Kr-h1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3L	2185124	3L_2185124_SNP [dm3] 3L_2185124_SNP [dm6]	A	C	1.225e^-4	0.903	UPSTREAM CG13810 INTERGENIC
3L	6392540	3L_6392540_SNP [dm3] 3L_6399440_SNP [dm6]	A	G	1.229e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_z
3L	2902926	3L_2902926_SNP [dm3] 3L_2902926_SNP [dm6]	C	T	1.229e^-4	0.903	INTRON Shab
2L	7059391	2L_7059391_SNP [dm3] 2L_7059391_SNP [dm6]	A	G	1.232e^-4	0.903	UTR_3_PRIME CG31907 DOWNSTREAM Mnn1 INTRON Mnn1	TF binding site mE1_TFBS_cad
3L	2480231	3L_2480231_SNP [dm3] 3L_2480231_SNP [dm6]	A	G	1.242e^-4	0.903	INTRON CG45186	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12342521	X_12342521_SNP [dm3] X_12448488_SNP [dm6]	C	G	1.247e^-4	0.903	INTRON Pkcdelta
3R	18611868	3R_18611868_SNP [dm3] 3R_22786146_SNP [dm6]	T	G	1.253e^-4	0.903	INTRON CG7029	TF binding site mE1_TFBS_HSA
3R	20376516	3R_20376516_SNP [dm3] 3R_24550794_SNP [dm6]	T	C	1.267e^-4	0.903	INTRON Esyt2
2L	12546775	2L_12546775_SNP [dm3] 2L_12546775_SNP [dm6]	C	T	1.270e^-4	0.903	UPSTREAM bun INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	2849894	2L_2849894_SNP [dm3] 2L_2849894_SNP [dm6]	C	T	1.277e^-4	0.903	SYNONYMOUS_CODING CG3104 DOWNSTREAM CG2983	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5885750	3L_5885750_DEL [dm3] 3L_5892650_DEL [dm6]	AAG	A	1.278e^-4	0.903	INTERGENIC
2R	6676113	2R_6676113_SNP [dm3] 2R_10788608_SNP [dm6]	A	T	1.280e^-4	0.903	INTRON CG33144
3R	20376633	3R_20376633_SNP [dm3] 3R_24550911_SNP [dm6]	G	T	1.281e^-4	0.903	INTRON Esyt2
3L	9733509	3L_9733509_SNP [dm3] 3L_9740409_SNP [dm6]	T	C	1.283e^-4	0.903	UPSTREAM CG42268 & 1 other INTRON CG42268
3L	1140886	3L_1140886_SNP [dm3] 3L_1140886_SNP [dm6]	A	T	1.296e^-4	0.903	UTR_3_PRIME bab2	TF binding site BDTNP1_TFBS_twi
2R	11055454	2R_11055454_SNP [dm3] 2R_15167949_SNP [dm6]	A	G	1.306e^-4	0.903	INTRON igl
3L	7390459	3L_7390459_SNP [dm3] 3L_7397359_SNP [dm6]	A	G	1.311e^-4	0.903	UPSTREAM CG8562 INTRON CG32379
3R	1306351	3R_1306351_SNP [dm3] 3R_5480629_SNP [dm6]	C	T	1.313e^-4	0.903	UTR_3_PRIME ksr INTRON Hcs	TF binding site mE1_TFBS_chinmo
3L	3471542	3L_3471542_SNP [dm3] 3L_3471542_SNP [dm6]	C	A	1.316e^-4	0.903	UPSTREAM CG14971 & 1 other DOWNSTREAM CG32267 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1025414	2L_1025414_SNP [dm3] 2L_1025414_SNP [dm6]	C	T	1.320e^-4	0.903	DOWNSTREAM CG4375 INTRON IA-2	TF binding site mE1_TFBS_chinmo
2L	1024692	2L_1024692_SNP [dm3] 2L_1024692_SNP [dm6]	C	G	1.323e^-4	0.903	INTRON IA-2
2R	9161684	2R_9161684_DEL [dm3] 2R_13274179_DEL [dm6]	CCATTTTCC	C	1.325e^-4	0.903	INTRON Dh31-R	TF binding site mE1_TFBS_cad
2L	6091244	2L_6091244_SNP [dm3] 2L_6091244_SNP [dm6]	C	G	1.333e^-4	0.903	UPSTREAM Kr-h1 & 1 other INTRON Kr-h1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
X	13236699	X_13236699_SNP [dm3] X_13342666_SNP [dm6]	C	A	1.348e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14080562	2L_14080562_SNP [dm3] 2L_14080562_SNP [dm6]	A	G	1.354e^-4	0.903	SYNONYMOUS_CODING nAChRalpha5
3L	10636949	3L_10636949_SNP [dm3] 3L_10643849_SNP [dm6]	C	A	1.363e^-4	0.903	NON_SYNONYMOUS_CODING CG14153 DOWNSTREAM CG14154 INTRON CG32066
2L	9985157	2L_9985157_SNP [dm3] 2L_9985157_SNP [dm6]	C	T	1.372e^-4	0.903	UPSTREAM CR13130 INTRON bib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12276081	2L_12276081_SNP [dm3] 2L_12276081_SNP [dm6]	G	T	1.378e^-4	0.903	INTRON aret
2R	16007384	2R_16007384_SNP [dm3] 2R_20119879_SNP [dm6]	C	G	1.384e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	1626966	2L_1626966_SNP [dm3] 2L_1626966_SNP [dm6]	C	T	1.384e^-4	0.903	UPSTREAM CR44603 INTERGENIC
3L	7143122	3L_7143122_SNP [dm3] 3L_7150022_SNP [dm6]	T	A	1.395e^-4	0.903	INTRON corn	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	7217041	3L_7217041_SNP [dm3] 3L_7223941_SNP [dm6]	A	C	1.395e^-4	0.903	DOWNSTREAM CR45410 INTERGENIC
2L	2812173	2L_2812173_SNP [dm3] 2L_2812173_SNP [dm6]	G	A	1.402e^-4	0.903	UTR_3_PRIME daw UPSTREAM CG2964 DOWNSTREAM daw	TF binding site mE1_TFBS_bab1
X	1625864	X_1625864_SNP [dm3] X_1731831_SNP [dm6]	A	T	1.403e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15212876	2L_15212876_SNP [dm3] 2L_15212876_SNP [dm6]	T	C	1.414e^-4	0.903	INTERGENIC
2L	1944309	2L_1944309_SNP [dm3] 2L_1944309_SNP [dm6]	G	A	1.425e^-4	0.903	DOWNSTREAM CG7337 & 1 other INTERGENIC
3L	13295300	3L_13295300_SNP [dm3] 3L_13302200_SNP [dm6]	T	G	1.429e^-4	0.903	UPSTREAM CR43911 DOWNSTREAM CR44557 & 1 other INTERGENIC
3R	1310455	3R_1310455_SNP [dm3] 3R_5484733_SNP [dm6]	G	A	1.438e^-4	0.903	SYNONYMOUS_CODING Hcs UPSTREAM ksr & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_ttk
2R	14115524	2R_14115524_SNP [dm3] 2R_18228019_SNP [dm6]	C	A	1.444e^-4	0.903	EXON CR45310 & 1 other
X	4671711	X_4671711_DEL [dm3] X_4777678_DEL [dm6]	TGT	T	1.449e^-4	0.903	UPSTREAM CG2871 INTERGENIC
2R	1010541	2R_1010541_SNP [dm3] 2R_5123036_SNP [dm6]	T	A	1.453e^-4	0.903	UPSTREAM gus INTRON gus	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_zfh1
3R	24253746	3R_24253746_SNP [dm3] 3R_28428024_SNP [dm6]	A	C	1.454e^-4	0.903	INTRON beat-VI
2R	8971512	2R_8971512_SNP [dm3] 2R_13084007_SNP [dm6]	G	C	1.463e^-4	0.903	INTERGENIC
3L	7402251	3L_7402251_SNP [dm3] 3L_7409151_SNP [dm6]	C	T	1.478e^-4	0.903	EXON CR44525
3L	6935082	3L_6935082_SNP [dm3] 3L_6941982_SNP [dm6]	T	G	1.484e^-4	0.903	UPSTREAM tow INTERGENIC
X	20402654	X_20402654_SNP [dm3] X_20531627_SNP [dm6]	G	A	1.485e^-4	0.903	INTERGENIC
3L	4099676	3L_4099676_SNP [dm3] 3L_4099676_SNP [dm6]	A	T	1.502e^-4	0.903	INTRON CG14995	TF binding site mE1_TFBS_inv
2L	8312105	2L_8312105_SNP [dm3] 2L_8312105_SNP [dm6]	A	G	1.503e^-4	0.903	UPSTREAM CG7810 INTRON CG7806	TF binding site mE1_TFBS_HSA
3R	75323	3R_75323_SNP [dm3] 3R_4249601_SNP [dm6]	T	G	1.512e^-4	0.903	NON_SYNONYMOUS_CODING TwdlG
3R	10859894	3R_10859894_SNP [dm3] 3R_15034172_SNP [dm6]	C	G	1.515e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	13017729	X_13017729_SNP [dm3] X_13123696_SNP [dm6]	T	G	1.516e^-4	0.903	DOWNSTREAM CG42237 INTRON CG32638	TF binding site BDTNP1_TFBS_twi
2L	4303669	2L_4303669_SNP [dm3] 2L_4303669_SNP [dm6]	C	T	1.517e^-4	0.903	INTRON tutl
3R	1310433	3R_1310433_SNP [dm3] 3R_5484711_SNP [dm6]	A	C	1.518e^-4	0.903	UPSTREAM ksr & 1 other INTRON Hcs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_ttk
2R	16931917	2R_16931917_SNP [dm3] 2R_21044412_SNP [dm6]	T	G	1.524e^-4	0.903	INTERGENIC
2R	9745523	2R_9745523_SNP [dm3] 2R_13858018_SNP [dm6]	A	G	1.537e^-4	0.903	SYNONYMOUS_CODING tum UPSTREAM Uba3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	17686601	X_17686601_SNP [dm3] X_17792568_SNP [dm6]	G	T	1.541e^-4	0.903	INTRON OdsH
2L	1024480	2L_1024480_SNP [dm3] 2L_1024480_SNP [dm6]	C	A	1.543e^-4	0.903	INTRON IA-2	insulator Insulator_Class_II.mE01
X	9738533	X_9738533_DEL [dm3] X_9844500_DEL [dm6]	GGCAGG	G	1.550e^-4	0.903	INTRON CG32698
3L	1141712	3L_1141712_SNP [dm3] 3L_1141712_SNP [dm6]	C	G	1.551e^-4	0.903	UTR_3_PRIME bab2
2R	9509721	2R_9509721_SNP [dm3] 2R_13622216_SNP [dm6]	A	T	1.553e^-4	0.903	UPSTREAM fas INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2L	11409903	2L_11409903_SNP [dm3] 2L_11409903_SNP [dm6]	T	C	1.563e^-4	0.903	INTERGENIC	regulatory region REDfly_CRMs
3L	11698508	3L_11698508_SNP [dm3] 3L_11705408_SNP [dm6]	A	T	1.565e^-4	0.903	INTRON CG11658
3L	11698516	3L_11698516_SNP [dm3] 3L_11705416_SNP [dm6]	T	A	1.565e^-4	0.903	INTRON CG11658
3L	5958698	3L_5958698_SNP [dm3] 3L_5965598_SNP [dm6]	T	A	1.568e^-4	0.903	INTERGENIC
2R	3220085	2R_3220085_DEL [dm3] 2R_7332580_DEL [dm6]	AA	A	1.570e^-4	0.903	INTRON CR45129 & 1 other
2L	14302550	2L_14302550_SNP [dm3] 2L_14302550_SNP [dm6]	A	T	1.589e^-4	0.903	INTRON wb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10632238	3L_10632238_SNP [dm3] 3L_10639138_SNP [dm6]	T	A	1.595e^-4	0.903	UPSTREAM CG18628 INTRON CG8009
2R	5192115	2R_5192115_SNP [dm3] 2R_9304610_SNP [dm6]	G	A	1.595e^-4	0.903	INTRON Myd88
2R	5192118	2R_5192118_SNP [dm3] 2R_9304613_SNP [dm6]	T	G	1.595e^-4	0.903	INTRON Myd88
2L	10936927	2L_10936927_SNP [dm3] 2L_10936927_SNP [dm6]	C	A	1.596e^-4	0.903	UPSTREAM CG14072 INTRON dpr2 & 1 other
2L	9396849	2L_9396849_SNP [dm3] 2L_9396849_SNP [dm6]	A	C	1.603e^-4	0.903	DOWNSTREAM CG4438 INTRON Shawl
2R	11299456	2R_11299456_SNP [dm3] 2R_15411951_SNP [dm6]	A	G	1.604e^-4	0.903	INTRON CG43729
3R	21005858	3R_21005858_SNP [dm3] 3R_25180136_SNP [dm6]	C	T	1.608e^-4	0.903	INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1024598	2L_1024598_SNP [dm3] 2L_1024598_SNP [dm6]	T	G	1.619e^-4	0.903	INTRON IA-2
3L	14059759	3L_14059759_SNP [dm3] 3L_14066659_SNP [dm6]	C	T	1.622e^-4	0.903	SYNONYMOUS_CODING CG32138	TF binding site mE1_TFBS_cad
3R	22402423	3R_22402423_DEL [dm3] 3R_26576701_DEL [dm6]	AGAGTTAATGAA...	A	1.623e^-4	0.903	UTR_3_PRIME scrib INTRON scrib
3L	13295292	3L_13295292_SNP [dm3] 3L_13302192_SNP [dm6]	A	T	1.624e^-4	0.903	UPSTREAM CR43911 DOWNSTREAM CR44557 & 1 other INTERGENIC
3R	18457901	3R_18457901_SNP [dm3] 3R_22632179_SNP [dm6]	C	T	1.629e^-4	0.903	INTRON loco	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	17124092	2R_17124092_INS [dm3] 2R_21236587_INS [dm6]	A	ACA	1.631e^-4	0.903	INTRON ASPP	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21740791	3R_21740791_SNP [dm3] 3R_25915069_SNP [dm6]	G	T	1.634e^-4	0.903	SPLICE_SITE_REGION CG42235 DOWNSTREAM CG42235 INTRON CG42235
X	16343280	X_16343280_SNP [dm3] X_16449247_SNP [dm6]	A	C	1.641e^-4	0.903	UTR_5_PRIME Rbp2 UPSTREAM CG34015 INTRON Rbp2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	5196857	X_5196857_SNP [dm3] X_5302824_SNP [dm6]	T	G	1.657e^-4	0.903	UTR_3_PRIME CG42749 DOWNSTREAM CG3323 INTRON CG42749
X	5230155	X_5230155_INS [dm3] X_5336122_INS [dm6]	T	TAT	1.658e^-4	0.903	INTERGENIC
2R	19973961	2R_19973961_SNP [dm3] 2R_24086438_SNP [dm6]	A	C	1.662e^-4	0.903	UPSTREAM snama DOWNSTREAM CG16786 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
X	8087676	X_8087676_DEL [dm3] X_8193643_DEL [dm6]	GTACA	G	1.690e^-4	0.903	INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	8026385	2L_8026385_SNP [dm3] 2L_8026385_SNP [dm6]	G	T	1.691e^-4	0.903	NON_SYNONYMOUS_CODING Tg DOWNSTREAM CG7367
2L	8306194	2L_8306194_SNP [dm3] 2L_8306194_SNP [dm6]	G	C	1.718e^-4	0.903	SYNONYMOUS_CODING CG7840 DOWNSTREAM Scgalpha & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2723299	2L_2723299_SNP [dm3] 2L_2723299_SNP [dm6]	T	A	1.724e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_inv
3L	1276109	3L_1276109_SNP [dm3] 3L_1276109_SNP [dm6]	T	C	1.735e^-4	0.903	UTR_5_PRIME CG32333	TF binding site mE1_TFBS_Trl
2R	9802146	2R_9802146_SNP [dm3] 2R_13914641_SNP [dm6]	A	G	1.737e^-4	0.903	INTRON shot
2L	8309113	2L_8309113_SNP [dm3] 2L_8309113_SNP [dm6]	G	C	1.742e^-4	0.903	SYNONYMOUS_CODING CG7818 UPSTREAM Ostgamma DOWNSTREAM CG7810	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	17686606	X_17686606_SNP [dm3] X_17792573_SNP [dm6]	A	C	1.745e^-4	0.903	INTRON OdsH
3R	1317223	3R_1317223_SNP [dm3] 3R_5491501_SNP [dm6]	A	G	1.746e^-4	0.903	INTRON CG31547	TF binding site mE1_TFBS_cad
X	17686762	X_17686762_SNP [dm3] X_17792729_SNP [dm6]	C	G	1.760e^-4	0.903	INTRON OdsH
3L	2185430	3L_2185430_SNP [dm3] 3L_2185430_SNP [dm6]	C	A	1.771e^-4	0.903	UPSTREAM CG13810 INTERGENIC
3L	1140569	3L_1140569_SNP [dm3] 3L_1140569_SNP [dm6]	A	C	1.771e^-4	0.903	UTR_3_PRIME bab2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5230024	X_5230024_SNP [dm3] X_5335991_SNP [dm6]	C	T	1.786e^-4	0.903	INTERGENIC
2R	16813547	2R_16813547_SNP [dm3] 2R_20926042_SNP [dm6]	T	G	1.793e^-4	0.903	INTRON Rx
X	17686608	X_17686608_SNP [dm3] X_17792575_SNP [dm6]	C	A	1.793e^-4	0.903	INTRON OdsH
3L	2552113	3L_2552113_SNP [dm3] 3L_2552113_SNP [dm6]	T	C	1.794e^-4	0.903	INTRON Spn
2R	18568036	2R_18568036_SNP [dm3] 2R_22680531_SNP [dm6]	G	C	1.794e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2R	9735077	2R_9735077_SNP [dm3] 2R_13847572_SNP [dm6]	G	A	1.798e^-4	0.903	SYNONYMOUS_CODING CG30484
2L	14080706	2L_14080706_SNP [dm3] 2L_14080706_SNP [dm6]	G	C	1.800e^-4	0.903	SYNONYMOUS_CODING nAChRalpha5
2R	13633375	2R_13633375_SNP [dm3] 2R_17745870_SNP [dm6]	A	G	1.801e^-4	0.903	UTR_3_PRIME sub & 1 other
2L	7975474	2L_7975474_SNP [dm3] 2L_7975474_SNP [dm6]	A	G	1.804e^-4	0.903	SYNONYMOUS_CODING Snoo	TF binding site mE1_TFBS_sens
3R	24253747	3R_24253747_SNP [dm3] 3R_28428025_SNP [dm6]	A	C	1.815e^-4	0.903	INTRON beat-VI
3L	5466620	3L_5466620_SNP [dm3] 3L_5473520_SNP [dm6]	G	A	1.817e^-4	0.903	INTERGENIC
X	6416332	X_6416332_SNP [dm3] X_6522299_SNP [dm6]	C	T	1.836e^-4	0.903	INTRON CG42340
2R	8640467	2R_8640467_SNP [dm3] 2R_12752962_SNP [dm6]	C	T	1.838e^-4	0.903	UPSTREAM mos DOWNSTREAM Taz INTERGENIC
2L	9907242	2L_9907242_SNP [dm3] 2L_9907242_SNP [dm6]	A	G	1.858e^-4	0.903	UTR_5_PRIME CG13124	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9739859	X_9739859_SNP [dm3] X_9845826_SNP [dm6]	G	T	1.863e^-4	0.903	INTRON CG32698
2R	6675855	2R_6675855_SNP [dm3] 2R_10788350_SNP [dm6]	C	T	1.870e^-4	0.903	INTRON CG33144
2L	9374999	2L_9374999_SNP [dm3] 2L_9374999_SNP [dm6]	C	T	1.880e^-4	0.903	DOWNSTREAM CR43865 INTRON Shawl
3L	3471562	3L_3471562_SNP [dm3] 3L_3471562_SNP [dm6]	T	A	1.880e^-4	0.903	UTR_3_PRIME CG32267 UPSTREAM CG14971 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4716510	3R_4716510_SNP [dm3] 3R_8890788_SNP [dm6]	T	A	1.889e^-4	0.903	INTRON pyd
2R	9736241	2R_9736241_SNP [dm3] 2R_13848736_SNP [dm6]	C	T	1.890e^-4	0.903	SYNONYMOUS_CODING CG30484
2L	1025367	2L_1025367_SNP [dm3] 2L_1025367_SNP [dm6]	T	C	1.892e^-4	0.903	DOWNSTREAM CG4375 INTRON IA-2	TF binding site mE1_TFBS_chinmo
2L	9971974	2L_9971974_SNP [dm3] 2L_9971974_SNP [dm6]	T	C	1.893e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	12265768	3L_12265768_SNP [dm3] 3L_12272668_SNP [dm6]	G	A	1.894e^-4	0.903	SYNONYMOUS_CODING CG4300	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20233777	X_20233777_SNP [dm3] X_20362750_SNP [dm6]	T	C	1.895e^-4	0.903	INTERGENIC
3L	4099684	3L_4099684_INS [dm3] 3L_4099684_INS [dm6]	A	ACTTTATACTTTCCCGACTT...	1.901e^-4	0.903	INTRON CG14995	TF binding site mE1_TFBS_inv
X	5117380	X_5117380_DEL [dm3] X_5223347_DEL [dm6]	TA	T	1.903e^-4	0.903	INTRON CG15465 & 1 other
2L	2309803	2L_2309803_SNP [dm3] 2L_2309803_SNP [dm6]	T	C	1.904e^-4	0.903	DOWNSTREAM CG16995 INTRON CG9967	TF binding site mE1_TFBS_chinmo
3L	2680927	3L_2680927_SNP [dm3] 3L_2680927_SNP [dm6]	T	G	1.913e^-4	0.903	INTRON Fife
2L	1041339	2L_1041339_SNP [dm3] 2L_1041339_SNP [dm6]	C	G	1.913e^-4	0.903	INTRON IA-2
2L	2850485	2L_2850485_SNP [dm3] 2L_2850485_SNP [dm6]	G	A	1.922e^-4	0.903	SYNONYMOUS_CODING CG3104	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	1416569	2R_1416569_SNP [dm3] 2R_5529064_SNP [dm6]	G	A	1.930e^-4	0.903	INTRON CG30438
3L	7998576	3L_7998576_SNP [dm3] 3L_8005476_SNP [dm6]	G	T	1.933e^-4	0.903	INTRON nmo	TF binding site BDTNP1_TFBS_dl
2L	15089005	2L_15089005_SNP [dm3] 2L_15089005_SNP [dm6]	C	T	1.948e^-4	0.903	INTRON CG15270
3L	7217056	3L_7217056_SNP [dm3] 3L_7223956_SNP [dm6]	G	A	1.956e^-4	0.903	DOWNSTREAM CR45410 INTERGENIC
2L	9147130	2L_9147130_SNP [dm3] 2L_9147130_SNP [dm6]	T	A	1.980e^-4	0.903	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	1326994	3R_1326994_INS [dm3] 3R_5501272_INS [dm6]	A	AAAAATTAAAAAA...	1.984e^-4	0.903	INTRON CG31547
2R	9747768	2R_9747768_SNP [dm3] 2R_13860263_SNP [dm6]	A	C	1.990e^-4	0.903	SYNONYMOUS_CODING Uba3 DOWNSTREAM CG16935	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10936939	2L_10936939_SNP [dm3] 2L_10936939_SNP [dm6]	G	T	1.992e^-4	0.903	UPSTREAM CG14072 INTRON dpr2 & 1 other
2L	1025391	2L_1025391_SNP [dm3] 2L_1025391_SNP [dm6]	G	C	1.994e^-4	0.903	DOWNSTREAM CG4375 INTRON IA-2	TF binding site mE1_TFBS_chinmo
3R	10859897	3R_10859897_SNP [dm3] 3R_15034175_SNP [dm6]	A	G	1.997e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8823969	2R_8823969_DEL [dm3] 2R_12936464_DEL [dm6]	TTTAT	T	2.002e^-4	0.903	UTR_5_PRIME CG13322 UPSTREAM Sans	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	18457942	3R_18457942_DEL [dm3] 3R_22632220_DEL [dm6]	GG	T	2.002e^-4	0.903	INTRON loco	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	1315181	3R_1315181_SNP [dm3] 3R_5489459_SNP [dm6]	C	A	2.006e^-4	0.903	UTR_3_PRIME CG31550 DOWNSTREAM CG31547
3L	11653929	3L_11653929_SNP [dm3] 3L_11660829_SNP [dm6]	A	G	2.015e^-4	0.903	INTRON CG32085
X	9775819	X_9775819_SNP [dm3] X_9881786_SNP [dm6]	C	T	2.020e^-4	0.903	UPSTREAM CG9689 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	8311377	2L_8311377_SNP [dm3] 2L_8311377_SNP [dm6]	G	T	2.027e^-4	0.903	UPSTREAM CG7806 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3R	26586274	3R_26586274_SNP [dm3] 3R_30760552_SNP [dm6]	G	A	2.042e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	16430574	X_16430574_SNP [dm3] X_16536541_SNP [dm6]	A	T	2.052e^-4	0.903	INTERGENIC
2L	11771838	2L_11771838_SNP [dm3] 2L_11771838_SNP [dm6]	A	C	2.067e^-4	0.903	INTERGENIC
2L	5538701	2L_5538701_SNP [dm3] 2L_5538701_SNP [dm6]	T	G	2.073e^-4	0.903	DOWNSTREAM Hel25E INTRON CG14015	TF binding site mE1_TFBS_chinmo
2L	12546798	2L_12546798_SNP [dm3] 2L_12546798_SNP [dm6]	C	A	2.079e^-4	0.903	UPSTREAM bun INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	24305696	3R_24305696_SNP [dm3] 3R_28479974_SNP [dm6]	T	C	2.081e^-4	0.903	INTERGENIC
3L	10671831	3L_10671831_SNP [dm3] 3L_10678731_SNP [dm6]	G	A	2.084e^-4	0.903	INTRON simj	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	18302437	2R_18302437_SNP [dm3] 2R_22414932_SNP [dm6]	G	T	2.091e^-4	0.903	SYNONYMOUS_CODING qkr58E-1 UPSTREAM qkr58E-2 DOWNSTREAM CR45152	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9746272	2R_9746272_DEL [dm3] 2R_13858767_DEL [dm6]	TAGAGAT	T	2.107e^-4	0.903	UPSTREAM Uba3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	19280502	2R_19280502_SNP [dm3] 2R_23392979_SNP [dm6]	A	C	2.109e^-4	0.903	SPLICE_SITE_DONOR CG3530 INTRON CG3530	TF binding site mE1_TFBS_chinmo
2L	8312126	2L_8312126_SNP [dm3] 2L_8312126_SNP [dm6]	T	A	2.113e^-4	0.903	UPSTREAM CG7810 INTRON CG7806	TF binding site mE1_TFBS_HSA
2L	8312132	2L_8312132_SNP [dm3] 2L_8312132_SNP [dm6]	G	C	2.113e^-4	0.903	UPSTREAM CG7810 INTRON CG7806	TF binding site mE1_TFBS_HSA
3R	22402456	3R_22402456_SNP [dm3] 3R_26576734_SNP [dm6]	C	A	2.114e^-4	0.903	UTR_3_PRIME scrib INTRON scrib
3L	18626499	3L_18626499_SNP [dm3] 3L_18633399_SNP [dm6]	T	A	2.115e^-4	0.903	INTRON MYPT-75D
3R	2109570	3R_2109570_SNP [dm3] 3R_6283848_SNP [dm6]	T	A	2.120e^-4	0.903	DOWNSTREAM CG15597 INTERGENIC
2L	9473028	2L_9473028_SNP [dm3] 2L_9473028_SNP [dm6]	C	A	2.127e^-4	0.903	INTERGENIC
2R	19321519	2R_19321519_SNP [dm3] 2R_23433996_SNP [dm6]	G	A	2.128e^-4	0.903	UPSTREAM CG9815 INTERGENIC
2R	9123187	2R_9123187_SNP [dm3] 2R_13235682_SNP [dm6]	G	C	2.132e^-4	0.903	UPSTREAM CG4676 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	9833391	2L_9833391_SNP [dm3] 2L_9833391_SNP [dm6]	T	C	2.138e^-4	0.903	INTRON nAChRalpha6
2L	8310665	2L_8310665_SNP [dm3] 2L_8310665_SNP [dm6]	C	T	2.145e^-4	0.903	SYNONYMOUS_CODING CG7810 UPSTREAM CG7806 DOWNSTREAM CG7818	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	8520254	2R_8520254_SNP [dm3] 2R_12632749_SNP [dm6]	A	G	2.148e^-4	0.903	UPSTREAM muskelin & 1 other INTRON CG33792	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
3L	2887933	3L_2887933_SNP [dm3] 3L_2887933_SNP [dm6]	A	T	2.157e^-4	0.903	INTRON spz5
3L	22850443	3L_22850443_SNP [dm3] 3L_22857343_SNP [dm6]	A	C	2.162e^-4	0.903	INTERGENIC
2L	12119423	2L_12119423_SNP [dm3] 2L_12119423_SNP [dm6]	G	T	2.167e^-4	0.903	INTRON CG17211
2L	1879831	2L_1879831_SNP [dm3] 2L_1879831_SNP [dm6]	T	A	2.169e^-4	0.903	INTRON CG31663
2R	19825921	2R_19825921_SNP [dm3] 2R_23938398_SNP [dm6]	C	T	2.173e^-4	0.903	NON_SYNONYMOUS_CODING CG3735	TF binding site mE1_TFBS_sens
2L	8771221	2L_8771221_SNP [dm3] 2L_8771221_SNP [dm6]	A	T	2.175e^-4	0.903	SYNONYMOUS_CODING CG9465
2L	11771841	2L_11771841_SNP [dm3] 2L_11771841_SNP [dm6]	C	T	2.178e^-4	0.903	INTERGENIC
3R	20207885	3R_20207885_SNP [dm3] 3R_24382163_SNP [dm6]	G	A	2.186e^-4	0.903	DOWNSTREAM CG17780 INTERGENIC
X	5117379	X_5117379_SNP [dm3] X_5223346_SNP [dm6]	T	A	2.203e^-4	0.903	INTRON CG15465 & 1 other
2L	5535035	2L_5535035_SNP [dm3] 2L_5535035_SNP [dm6]	A	G	2.203e^-4	0.903	DOWNSTREAM tomb INTRON Cap-D3
X	20233908	X_20233908_SNP [dm3] X_20362881_SNP [dm6]	G	T	2.203e^-4	0.903	INTERGENIC
3L	4712298	3L_4712298_SNP [dm3] 3L_4712298_SNP [dm6]	C	G	2.205e^-4	0.903	INTRON RhoGEF64C
3R	19180812	3R_19180812_SNP [dm3] 3R_23355090_SNP [dm6]	A	T	2.219e^-4	0.903	UTR_3_PRIME DNApol-epsilon DOWNSTREAM ATPsyn-Cf6	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8303854	2R_8303854_DEL [dm3] 2R_12416349_DEL [dm6]	GCTGCTG	G	2.219e^-4	0.903	UTR_5_PRIME CG13157
3L	3670900	3L_3670900_SNP [dm3] 3L_3670900_SNP [dm6]	A	G	2.222e^-4	0.903	INTERGENIC
2L	9971988	2L_9971988_SNP [dm3] 2L_9971988_SNP [dm6]	G	C	2.225e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	24107138	3R_24107138_SNP [dm3] 3R_28281416_SNP [dm6]	A	G	2.226e^-4	0.903	INTERGENIC
2R	16028531	2R_16028531_SNP [dm3] 2R_20141026_SNP [dm6]	A	C	2.239e^-4	0.903	INTERGENIC
3R	1315321	3R_1315321_SNP [dm3] 3R_5489599_SNP [dm6]	C	A	2.246e^-4	0.903	UTR_3_PRIME CG31547 DOWNSTREAM CG31550	TF binding site mE1_TFBS_cad
2R	14837376	2R_14837376_SNP [dm3] 2R_18949871_SNP [dm6]	T	C	2.268e^-4	0.903	INTRON sano	TF binding site BDTNP1_TFBS_twi
2R	8520256	2R_8520256_SNP [dm3] 2R_12632751_SNP [dm6]	A	T	2.276e^-4	0.903	UPSTREAM muskelin & 1 other INTRON CG33792	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
2L	7540127	2L_7540127_SNP [dm3] 2L_7540127_SNP [dm6]	C	T	2.278e^-4	0.903	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13577721	2R_13577721_SNP [dm3] 2R_17690216_SNP [dm6]	C	G	2.284e^-4	0.903	UTR_3_PRIME HPS4 DOWNSTREAM swi2
3R	20984176	3R_20984176_SNP [dm3] 3R_25158454_SNP [dm6]	C	T	2.288e^-4	0.903	INTERGENIC
2R	19973994	2R_19973994_SNP [dm3] 2R_24086471_SNP [dm6]	A	G	2.296e^-4	0.903	UPSTREAM snama DOWNSTREAM CG16786 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3L	4712192	3L_4712192_SNP [dm3] 3L_4712192_SNP [dm6]	A	T	2.298e^-4	0.903	INTRON RhoGEF64C
3R	1251616	3R_1251616_SNP [dm3] 3R_5425894_SNP [dm6]	G	A	2.299e^-4	0.903	SYNONYMOUS_CODING CG12147 INTRON CG14669	TF binding site mE1_TFBS_cad
2L	2721896	2L_2721896_SNP [dm3] 2L_2721896_SNP [dm6]	A	G	2.301e^-4	0.903	INTERGENIC
3R	2350642	3R_2350642_SNP [dm3] 3R_6524920_SNP [dm6]	T	C	2.313e^-4	0.903	INTERGENIC
X	8747003	X_8747003_SNP [dm3] X_8852970_SNP [dm6]	T	G	2.318e^-4	0.903	UPSTREAM CG12075 INTRON CG12075
3R	12926193	3R_12926193_INS [dm3] 3R_17100471_INS [dm6]	T	TT	2.322e^-4	0.903	INTRON cher
2R	10423541	2R_10423541_SNP [dm3] 2R_14536036_SNP [dm6]	C	T	2.322e^-4	0.903	INTRON ttv
X	8772284	X_8772284_SNP [dm3] X_8878251_SNP [dm6]	G	T	2.327e^-4	0.903	INTRON Moe
2R	8520177	2R_8520177_SNP [dm3] 2R_12632672_SNP [dm6]	C	T	2.349e^-4	0.903	UPSTREAM CG33792 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
2R	8520263	2R_8520263_SNP [dm3] 2R_12632758_SNP [dm6]	C	T	2.355e^-4	0.903	UPSTREAM muskelin & 1 other INTRON CG33792	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
3R	23955006	3R_23955006_SNP [dm3] 3R_28129284_SNP [dm6]	C	A	2.355e^-4	0.903	INTERGENIC
2R	11397361	2R_11397361_INS [dm3] 2R_15509856_INS [dm6]	G	GG	2.366e^-4	0.903	INTERGENIC
3L	1933598	3L_1933598_SNP [dm3] 3L_1933598_SNP [dm6]	A	T	2.366e^-4	0.903	UTR_3_PRIME Dbx DOWNSTREAM CG5687
3L	2750793	3L_2750793_SNP [dm3] 3L_2750793_SNP [dm6]	A	C	2.367e^-4	0.903	INTRON Mrtf
2R	18301876	2R_18301876_SNP [dm3] 2R_22414371_SNP [dm6]	T	G	2.373e^-4	0.903	INTRON qkr58E-1	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_sens
3L	3406512	3L_3406512_SNP [dm3] 3L_3406512_SNP [dm6]	T	C	2.377e^-4	0.903	INTRON sty
X	9775515	X_9775515_SNP [dm3] X_9881482_SNP [dm6]	G	A	2.381e^-4	0.903	UPSTREAM CG9689 DOWNSTREAM CG9686 INTERGENIC	TF binding site mE1_TFBS_Trl
X	9775519	X_9775519_SNP [dm3] X_9881486_SNP [dm6]	A	C	2.381e^-4	0.903	UPSTREAM CG9689 DOWNSTREAM CG9686 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	1095657	3L_1095657_SNP [dm3] 3L_1095657_SNP [dm6]	G	C	2.387e^-4	0.903	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16367894	2R_16367894_SNP [dm3] 2R_20480389_SNP [dm6]	C	T	2.388e^-4	0.903	INTERGENIC
X	5540804	X_5540804_SNP [dm3] X_5646771_SNP [dm6]	T	G	2.397e^-4	0.903	INTRON CG42492
2L	12547129	2L_12547129_SNP [dm3] 2L_12547129_SNP [dm6]	G	A	2.398e^-4	0.903	UPSTREAM bun INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	2383030	3L_2383030_SNP [dm3] 3L_2383030_SNP [dm6]	T	G	2.411e^-4	0.903	INTRON CG45186
2L	8026682	2L_8026682_SNP [dm3] 2L_8026682_SNP [dm6]	G	A	2.413e^-4	0.903	SYNONYMOUS_CODING Tg DOWNSTREAM CG7367
2L	10897950	2L_10897950_SNP [dm3] 2L_10897950_SNP [dm6]	A	G	2.417e^-4	0.903	INTERGENIC
3L	1439384	3L_1439384_DEL [dm3] 3L_1439384_DEL [dm6]	CT	A	2.420e^-4	0.903	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da
3R	1058346	3R_1058346_SNP [dm3] 3R_5232624_SNP [dm6]	T	G	2.421e^-4	0.903	UTR_5_PRIME Mms19 UPSTREAM Kat60	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	13168019	2R_13168019_SNP [dm3] 2R_17280514_SNP [dm6]	A	G	2.425e^-4	0.903	INTRON mbl
2R	19974009	2R_19974009_SNP [dm3] 2R_24086486_SNP [dm6]	T	A	2.427e^-4	0.903	UPSTREAM snama DOWNSTREAM CG16786 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2L	9122860	2L_9122860_SNP [dm3] 2L_9122860_SNP [dm6]	G	T	2.428e^-4	0.903	UPSTREAM CR44616 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10420442	2R_10420442_SNP [dm3] 2R_14532937_SNP [dm6]	G	A	2.429e^-4	0.903	INTRON ttv
X	17538622	X_17538622_SNP [dm3] X_17644589_SNP [dm6]	A	T	2.432e^-4	0.903	INTRON RhoGAPp190
X	9775511	X_9775511_SNP [dm3] X_9881478_SNP [dm6]	C	T	2.436e^-4	0.903	UPSTREAM CG9689 DOWNSTREAM CG9686 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	16477287	2L_16477287_SNP [dm3] 2L_16477287_SNP [dm6]	A	T	2.440e^-4	0.903	INTRON dac	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	8030452	3L_8030452_SNP [dm3] 3L_8037352_SNP [dm6]	C	T	2.444e^-4	0.903	INTRON nmo	TF binding site mE1_TFBS_inv
2R	19974286	2R_19974286_SNP [dm3] 2R_24086763_SNP [dm6]	T	C	2.445e^-4	0.903	UTR_5_PRIME snama DOWNSTREAM CG16786 INTRON snama	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	12681969	2R_12681969_SNP [dm3] 2R_16794464_SNP [dm6]	A	G	2.447e^-4	0.903	SYNONYMOUS_CODING CG15615
2R	9746850	2R_9746850_SNP [dm3] 2R_13859345_SNP [dm6]	T	C	2.460e^-4	0.903	SYNONYMOUS_CODING Uba3 UPSTREAM tum	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12417431	3L_12417431_SNP [dm3] 3L_12424331_SNP [dm6]	C	T	2.460e^-4	0.903	INTRON toe
2R	16083816	2R_16083816_SNP [dm3] 2R_20196311_SNP [dm6]	G	A	2.469e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11049115	2R_11049115_SNP [dm3] 2R_15161610_SNP [dm6]	A	G	2.480e^-4	0.903	INTRON igl
2R	11299352	2R_11299352_SNP [dm3] 2R_15411847_SNP [dm6]	G	A	2.483e^-4	0.903	INTRON CG43729
3L	7398542	3L_7398542_SNP [dm3] 3L_7405442_SNP [dm6]	C	A	2.485e^-4	0.903	UPSTREAM pncr015:3L INTERGENIC
2R	1010456	2R_1010456_SNP [dm3] 2R_5122951_SNP [dm6]	T	G	2.486e^-4	0.903	UPSTREAM gus INTRON gus	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2R	12682364	2R_12682364_SNP [dm3] 2R_16794859_SNP [dm6]	C	A	2.487e^-4	0.903	INTRON CG15615
2R	17876070	2R_17876070_SNP [dm3] 2R_21988565_SNP [dm6]	T	C	2.489e^-4	0.903	SYNONYMOUS_CODING CG34370	TF binding site mE1_TFBS_cad
2R	12681996	2R_12681996_SNP [dm3] 2R_16794491_SNP [dm6]	G	A	2.489e^-4	0.903	SYNONYMOUS_CODING CG15615
3L	5408850	3L_5408850_SNP [dm3] 3L_5415750_SNP [dm6]	G	A	2.492e^-4	0.903	INTERGENIC
2R	9734094	2R_9734094_MNP [dm3] 2R_13846589_MNP [dm6]	TTGGTAA	AATCACT	2.492e^-4	0.903	UPSTREAM Syngr INTRON CG30484	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18925280	X_18925280_SNP [dm3] X_19031247_SNP [dm6]	A	T	2.498e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9747033	2R_9747033_SNP [dm3] 2R_13859528_SNP [dm6]	C	T	2.503e^-4	0.903	SYNONYMOUS_CODING Uba3 UPSTREAM tum DOWNSTREAM CG16935	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	8622163	3L_8622163_SNP [dm3] 3L_8629063_SNP [dm6]	T	A	2.505e^-4	0.903	INTRON Zasp66	TF binding site BDTNP1_TFBS_da
2L	9392814	2L_9392814_SNP [dm3] 2L_9392814_SNP [dm6]	C	T	2.506e^-4	0.903	INTRON Shawl
X	3973368	X_3973368_SNP [dm3] X_4079335_SNP [dm6]	A	T	2.512e^-4	0.903	INTRON CG43689	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2698275	X_2698275_SNP [dm3] X_2804242_SNP [dm6]	C	T	2.519e^-4	0.903	INTRON kirre
3L	12408673	3L_12408673_SNP [dm3] 3L_12415573_SNP [dm6]	G	A	2.527e^-4	0.903	SYNONYMOUS_CODING ArfGAP1 UPSTREAM CG32103	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	7827429	2R_7827429_SNP [dm3] 2R_11939924_SNP [dm6]	T	A	2.534e^-4	0.903	UTR_5_PRIME CG13188
3R	14448626	3R_14448626_SNP [dm3] 3R_18622904_SNP [dm6]	A	G	2.549e^-4	0.903	INTRON qin	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	4199948	2L_4199948_SNP [dm3] 2L_4199948_SNP [dm6]	G	T	2.556e^-4	0.903	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7399158	3L_7399158_MNP [dm3] 3L_7406058_MNP [dm6]	TCCCA	ATTGG	2.560e^-4	0.903	UPSTREAM pncr015:3L INTERGENIC
3R	24107165	3R_24107165_SNP [dm3] 3R_28281443_SNP [dm6]	A	T	2.566e^-4	0.903	INTERGENIC
X	9775487	X_9775487_SNP [dm3] X_9881454_SNP [dm6]	A	G	2.579e^-4	0.903	UPSTREAM CG9689 DOWNSTREAM CG9686 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	20209017	3R_20209017_SNP [dm3] 3R_24383295_SNP [dm6]	A	T	2.590e^-4	0.903	UTR_3_PRIME CG17780
2L	8312641	2L_8312641_SNP [dm3] 2L_8312641_SNP [dm6]	A	G	2.590e^-4	0.903	SYNONYMOUS_CODING CG7806
3L	4099177	3L_4099177_DEL [dm3] 3L_4099177_DEL [dm6]	CACTACTCCAC...	C	2.592e^-4	0.903	INTRON CG14995	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3R	24311379	3R_24311379_SNP [dm3] 3R_28485657_SNP [dm6]	G	A	2.602e^-4	0.903	NON_SYNONYMOUS_CODING CG1894
2R	9734430	2R_9734430_SNP [dm3] 2R_13846925_SNP [dm6]	A	G	2.612e^-4	0.903	NON_SYNONYMOUS_CODING CG30484 UPSTREAM Syngr	TF binding site BDTNP1_TFBS_dl
2L	10799354	2L_10799354_SNP [dm3] 2L_10799354_SNP [dm6]	C	A	2.615e^-4	0.903	INTRON CG31869
2R	9745328	2R_9745328_SNP [dm3] 2R_13857823_SNP [dm6]	C	G	2.616e^-4	0.903	SYNONYMOUS_CODING tum	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2480035	3L_2480035_SNP [dm3] 3L_2480035_SNP [dm6]	A	G	2.620e^-4	0.903	INTRON CG45186	TF binding site BDTNP1_TFBS_twi
2L	17549116	2L_17549116_SNP [dm3] 2L_17549116_SNP [dm6]	T	C	2.628e^-4	0.903	INTERGENIC
2L	12546805	2L_12546805_SNP [dm3] 2L_12546805_SNP [dm6]	T	C	2.636e^-4	0.903	UPSTREAM bun INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4633263	3L_4633263_SNP [dm3] 3L_4633263_SNP [dm6]	G	T	2.637e^-4	0.903	INTRON axo
3L	5533712	3L_5533712_INS [dm3] 3L_5540612_INS [dm6]	T	TA	2.649e^-4	0.903	SPLICE_SITE_REGION CG10625 INTRON CG10625
X	21475617	X_21475617_SNP [dm3] X_21604590_SNP [dm6]	A	G	2.651e^-4	0.903	SPLICE_SITE_REGION CG14476 UTR_5_PRIME CG14476
3L	4099494	3L_4099494_SNP [dm3] 3L_4099494_SNP [dm6]	T	A	2.658e^-4	0.903	INTRON CG14995	TF binding site mE1_TFBS_inv
3L	2185750	3L_2185750_DEL [dm3] 3L_2185750_DEL [dm6]	AT	A	2.663e^-4	0.903	UPSTREAM CG13810 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	1142211	3L_1142211_SNP [dm3] 3L_1142211_SNP [dm6]	G	A	2.678e^-4	0.903	SYNONYMOUS_CODING bab2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
X	9777592	X_9777592_SNP [dm3] X_9883559_SNP [dm6]	C	G	2.680e^-4	0.903	UTR_3_PRIME CG9689 UPSTREAM CG9691 DOWNSTREAM CG9689
2L	10745416	2L_10745416_SNP [dm3] 2L_10745416_SNP [dm6]	C	G	2.685e^-4	0.903	UTR_3_PRIME CG17124
3R	1251806	3R_1251806_SNP [dm3] 3R_5426084_SNP [dm6]	C	A	2.689e^-4	0.903	NON_SYNONYMOUS_CODING CG12147 INTRON CG14669	TF binding site mE1_TFBS_cad
3L	5992650	3L_5992650_SNP [dm3] 3L_5999550_SNP [dm6]	T	A	2.691e^-4	0.903	INTRON PVRAP
3R	21523107	3R_21523107_SNP [dm3] 3R_25697385_SNP [dm6]	C	T	2.691e^-4	0.903	INTERGENIC
2L	1879935	2L_1879935_SNP [dm3] 2L_1879935_SNP [dm6]	A	G	2.700e^-4	0.903	INTRON CG31663
2L	9446947	2L_9446947_SNP [dm3] 2L_9446947_SNP [dm6]	C	T	2.701e^-4	0.903	INTRON numb	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
3L	2418210	3L_2418210_INS [dm3] 3L_2418210_INS [dm6]	A	AA	2.705e^-4	0.903	UTR_5_PRIME CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2698225	X_2698225_SNP [dm3] X_2804192_SNP [dm6]	T	A	2.708e^-4	0.903	INTRON kirre
2L	5020256	2L_5020256_SNP [dm3] 2L_5020256_SNP [dm6]	A	G	2.721e^-4	0.903	INTRON vkg	TF binding site BDTNP1_TFBS_twi
2L	9849131	2L_9849131_SNP [dm3] 2L_9849131_SNP [dm6]	A	G	2.735e^-4	0.903	DOWNSTREAM CR43766 INTRON nAChRalpha6
3L	17832501	3L_17832501_SNP [dm3] 3L_17839401_SNP [dm6]	A	T	2.741e^-4	0.903	UTR_3_PRIME Grd DOWNSTREAM CG5577
3L	2320517	3L_2320517_SNP [dm3] 3L_2320517_SNP [dm6]	T	C	2.751e^-4	0.903	UPSTREAM CR45426 INTERGENIC
3R	10939401	3R_10939401_INS [dm3] 3R_15113679_INS [dm6]	T	AC	2.762e^-4	0.903	INTRON CG42788
3L	5466637	3L_5466637_SNP [dm3] 3L_5473537_SNP [dm6]	A	G	2.763e^-4	0.903	INTERGENIC
2R	17171840	2R_17171840_SNP [dm3] 2R_21284335_SNP [dm6]	G	A	2.768e^-4	0.903	DOWNSTREAM CG10505 INTRON MFS16	TF binding site mE1_TFBS_cad
3R	21523134	3R_21523134_SNP [dm3] 3R_25697412_SNP [dm6]	T	C	2.772e^-4	0.903	INTERGENIC
X	14988589	X_14988589_SNP [dm3] X_15094556_SNP [dm6]	C	G	2.773e^-4	0.903	SYNONYMOUS_CODING Rab3-GEF DOWNSTREAM CG9072	TF binding site mE1_TFBS_chinmo
2L	9576761	2L_9576761_SNP [dm3] 2L_9576761_SNP [dm6]	G	A	2.777e^-4	0.903	START_GAINED Mtpalpha UTR_5_PRIME Mtpalpha	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
2L	12942609	2L_12942609_SNP [dm3] 2L_12942609_SNP [dm6]	T	A	2.781e^-4	0.903	INTERGENIC
2L	13362476	2L_13362476_INS [dm3] 2L_13362476_INS [dm6]	C	CC	2.803e^-4	0.903	UPSTREAM CG9377 DOWNSTREAM Nnp-1 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	8791320	2L_8791320_SNP [dm3] 2L_8791320_SNP [dm6]	T	C	2.810e^-4	0.903	INTERGENIC
2L	2852366	2L_2852366_SNP [dm3] 2L_2852366_SNP [dm6]	A	G	2.811e^-4	0.903	INTRON CG3104
X	8901606	X_8901606_DEL [dm3] X_9007573_DEL [dm6]	AG	C	2.811e^-4	0.903	INTRON rdgA & 1 other
3L	12415376	3L_12415376_SNP [dm3] 3L_12422276_SNP [dm6]	A	G	2.813e^-4	0.903	DOWNSTREAM toe INTERGENIC
X	9670277	X_9670277_SNP [dm3] X_9776244_SNP [dm6]	C	T	2.820e^-4	0.903	INTERGENIC
X	20225834	X_20225834_SNP [dm3] X_20354807_SNP [dm6]	G	T	2.820e^-4	0.903	INTERGENIC
X	13236649	X_13236649_SNP [dm3] X_13342616_SNP [dm6]	T	G	2.820e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15442112	2L_15442112_SNP [dm3] 2L_15442112_SNP [dm6]	G	T	2.821e^-4	0.903	EXON CR44862	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	13942327	2L_13942327_SNP [dm3] 2L_13942327_SNP [dm6]	T	G	2.822e^-4	0.903	INTRON Ance-3
3L	2750832	3L_2750832_SNP [dm3] 3L_2750832_SNP [dm6]	T	A	2.829e^-4	0.903	INTRON Mrtf
2R	7706054	2R_7706054_SNP [dm3] 2R_11818549_SNP [dm6]	A	G	2.831e^-4	0.903	INTERGENIC
X	20442335	X_20442335_SNP [dm3] X_20571308_SNP [dm6]	G	A	2.832e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	14492314	X_14492314_SNP [dm3] X_14598281_SNP [dm6]	C	A	2.832e^-4	0.903	INTRON CG9413
2L	12308858	2L_12308858_SNP [dm3] 2L_12308858_SNP [dm6]	C	A	2.836e^-4	0.903	INTRON aret
3L	11686900	3L_11686900_SNP [dm3] 3L_11693800_SNP [dm6]	C	G	2.836e^-4	0.903	DOWNSTREAM CG11652 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7687742	2R_7687742_SNP [dm3] 2R_11800237_SNP [dm6]	C	G	2.854e^-4	0.903	INTRON ths	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1015953	2L_1015953_SNP [dm3] 2L_1015953_SNP [dm6]	A	G	2.854e^-4	0.903	INTRON IA-2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5429032	X_5429032_SNP [dm3] X_5534999_SNP [dm6]	G	C	2.864e^-4	0.903	INTRON Vsx2
3L	12353743	3L_12353743_SNP [dm3] 3L_12360643_SNP [dm6]	C	A	2.872e^-4	0.903	INTERGENIC
X	18970753	X_18970753_INS [dm3] X_19076720_INS [dm6]	C	CC	2.882e^-4	0.903	UPSTREAM CG7406 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	10560790	3L_10560790_SNP [dm3] 3L_10567690_SNP [dm6]	A	T	2.887e^-4	0.903	INTRON A2bp1
2L	10018734	2L_10018734_SNP [dm3] 2L_10018734_SNP [dm6]	G	C	2.889e^-4	0.903	INTERGENIC
2R	990180	2R_990180_SNP [dm3] 2R_5102675_SNP [dm6]	A	G	2.897e^-4	0.903	INTERGENIC	transposable element FlyBase
2R	2731662	2R_2731662_SNP [dm3] 2R_6844157_SNP [dm6]	A	T	2.900e^-4	0.903	INTERGENIC
2L	10235080	2L_10235080_SNP [dm3] 2L_10235080_SNP [dm6]	G	A	2.902e^-4	0.903	SYNONYMOUS_CODING mthl15 UTR_3_PRIME mthl15 DOWNSTREAM eEF1delta
3L	12414538	3L_12414538_SNP [dm3] 3L_12421438_SNP [dm6]	G	A	2.918e^-4	0.903	INTERGENIC
2L	1024810	2L_1024810_SNP [dm3] 2L_1024810_SNP [dm6]	C	G	2.923e^-4	0.903	INTRON IA-2
X	14037717	X_14037717_SNP [dm3] X_14143684_SNP [dm6]	G	T	2.926e^-4	0.903	INTERGENIC
3R	1264414	3R_1264414_SNP [dm3] 3R_5438692_SNP [dm6]	T	G	2.928e^-4	0.903	INTRON CG14669	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
3R	21245780	3R_21245780_SNP [dm3] 3R_25420058_SNP [dm6]	T	C	2.931e^-4	0.903	INTRON Fur1	TF binding site mE1_TFBS_sens
2R	9105422	2R_9105422_SNP [dm3] 2R_13217917_SNP [dm6]	T	C	2.935e^-4	0.903	NON_SYNONYMOUS_CODING CG4630	TF binding site mE1_TFBS_cad
3L	4488749	3L_4488749_SNP [dm3] 3L_4488749_SNP [dm6]	T	C	2.935e^-4	0.903	INTRON CG13722
3L	10631736	3L_10631736_SNP [dm3] 3L_10638636_SNP [dm6]	C	A	2.943e^-4	0.903	SYNONYMOUS_CODING CG8009 UPSTREAM E_z_	TF binding site BDTNP1_TFBS_Med
3L	12414528	3L_12414528_SNP [dm3] 3L_12421428_SNP [dm6]	C	A	2.943e^-4	0.903	INTERGENIC
2L	21979204	2L_21979204_SNP [dm3] 2L_21979204_SNP [dm6]	T	A	2.963e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12031560	2L_12031560_SNP [dm3] 2L_12031560_SNP [dm6]	C	G	2.964e^-4	0.903	INTRON dmGlut	TF binding site mE1_TFBS_cad
3L	2750760	3L_2750760_SNP [dm3] 3L_2750760_SNP [dm6]	G	A	2.975e^-4	0.903	INTRON Mrtf
2L	1024753	2L_1024753_SNP [dm3] 2L_1024753_SNP [dm6]	T	C	2.976e^-4	0.903	INTRON IA-2
X	8830715	X_8830715_SNP [dm3] X_8936682_SNP [dm6]	G	A	2.976e^-4	0.903	INTRON rdgA
X	2698245	X_2698245_SNP [dm3] X_2804212_SNP [dm6]	G	A	2.976e^-4	0.903	INTRON kirre
2L	2723281	2L_2723281_SNP [dm3] 2L_2723281_SNP [dm6]	G	A	2.985e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_inv
2L	2723283	2L_2723283_SNP [dm3] 2L_2723283_SNP [dm6]	T	G	2.985e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_inv
2L	19938534	2L_19938534_SNP [dm3] 2L_19938534_SNP [dm6]	A	G	2.998e^-4	0.903	INTRON sick	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3R	1051364	3R_1051364_SNP [dm3] 3R_5225642_SNP [dm6]	G	C	3.004e^-4	0.903	UPSTREAM Vps37B DOWNSTREAM CG14664 INTERGENIC
2R	14114134	2R_14114134_SNP [dm3] 2R_18226629_SNP [dm6]	G	T	3.007e^-4	0.903	UPSTREAM CR45310 DOWNSTREAM CR45311 INTERGENIC
3L	20617888	3L_20617888_SNP [dm3] 3L_20624788_SNP [dm6]	C	A	3.010e^-4	0.903	UPSTREAM CR44684 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
X	20392179	X_20392179_SNP [dm3] X_20521152_SNP [dm6]	T	G	3.012e^-4	0.903	INTRON Tak1
2L	13124593	2L_13124593_SNP [dm3] 2L_13124593_SNP [dm6]	G	T	3.017e^-4	0.903	INTERGENIC
X	17690382	X_17690382_SNP [dm3] X_17796349_SNP [dm6]	G	A	3.018e^-4	0.903	INTRON OdsH
2L	1025723	2L_1025723_SNP [dm3] 2L_1025723_SNP [dm6]	T	C	3.026e^-4	0.903	DOWNSTREAM CG4375 INTRON IA-2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1024525	2L_1024525_SNP [dm3] 2L_1024525_SNP [dm6]	T	C	3.032e^-4	0.903	INTRON IA-2
2R	9734434	2R_9734434_SNP [dm3] 2R_13846929_SNP [dm6]	T	A	3.033e^-4	0.903	NON_SYNONYMOUS_CODING CG30484 UPSTREAM Syngr	TF binding site BDTNP1_TFBS_dl
X	14589146	X_14589146_SNP [dm3] X_14695113_SNP [dm6]	C	T	3.034e^-4	0.903	INTRON NetB
X	14589147	X_14589147_SNP [dm3] X_14695114_SNP [dm6]	G	A	3.043e^-4	0.903	INTRON NetB
3L	663121	3L_663121_SNP [dm3] 3L_663121_SNP [dm6]	T	C	3.044e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
2R	8520198	2R_8520198_SNP [dm3] 2R_12632693_SNP [dm6]	C	A	3.051e^-4	0.903	NON_SYNONYMOUS_CODING CG33792 UPSTREAM muskelin & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
2L	6218551	2L_6218551_INS [dm3] 2L_6218551_INS [dm6]	T	TCACT	3.059e^-4	0.903	INTERGENIC
2R	16812379	2R_16812379_SNP [dm3] 2R_20924874_SNP [dm6]	C	T	3.062e^-4	0.903	INTRON Rx
2L	1890626	2L_1890626_SNP [dm3] 2L_1890626_SNP [dm6]	A	G	3.077e^-4	0.903	INTRON CG7337
3L	3209688	3L_3209688_SNP [dm3] 3L_3209688_SNP [dm6]	T	C	3.077e^-4	0.903	SYNONYMOUS_CODING gry UPSTREAM CG32270 & 1 other	TF binding site mE1_TFBS_chinmo
3L	2551434	3L_2551434_SNP [dm3] 3L_2551434_SNP [dm6]	C	T	3.088e^-4	0.903	INTRON Spn
2L	9396919	2L_9396919_SNP [dm3] 2L_9396919_SNP [dm6]	C	A	3.096e^-4	0.903	DOWNSTREAM CG4438 INTRON Shawl
3L	10631766	3L_10631766_SNP [dm3] 3L_10638666_SNP [dm6]	T	C	3.098e^-4	0.903	SYNONYMOUS_CODING CG8009 UPSTREAM E_z_	TF binding site BDTNP1_TFBS_Med
2L	5537773	2L_5537773_SNP [dm3] 2L_5537773_SNP [dm6]	G	A	3.106e^-4	0.903	INTRON CG14015	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	2722747	2L_2722747_SNP [dm3] 2L_2722747_SNP [dm6]	G	A	3.108e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	2850138	3L_2850138_SNP [dm3] 3L_2850138_SNP [dm6]	G	C	3.112e^-4	0.903	INTRON CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	10564704	2L_10564704_SNP [dm3] 2L_10564704_SNP [dm6]	C	A	3.112e^-4	0.903	INTRON Trim9
2R	16694216	2R_16694216_DEL [dm3] 2R_20806711_DEL [dm6]	CCTGC	C	3.117e^-4	0.903	INTERGENIC
2R	16914839	2R_16914839_SNP [dm3] 2R_21027334_SNP [dm6]	C	T	3.126e^-4	0.903	INTERGENIC
2R	7401147	2R_7401147_SNP [dm3] 2R_11513642_SNP [dm6]	C	T	3.143e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	11974619	2L_11974619_SNP [dm3] 2L_11974619_SNP [dm6]	T	A	3.151e^-4	0.903	INTERGENIC
2R	13136697	2R_13136697_SNP [dm3] 2R_17249192_SNP [dm6]	G	T	3.152e^-4	0.903	INTRON mbl
3L	7217047	3L_7217047_SNP [dm3] 3L_7223947_SNP [dm6]	G	T	3.155e^-4	0.903	DOWNSTREAM CR45410 INTERGENIC
2L	8366896	2L_8366896_DEL [dm3] 2L_8366896_DEL [dm6]	AA	A	3.155e^-4	0.903	INTRON Pp2A-29B	TF binding site BDTNP1_TFBS_dl
2L	6860382	2L_6860382_SNP [dm3] 2L_6860382_SNP [dm6]	T	C	3.161e^-4	0.903	SYNONYMOUS_CODING l_2_k09022 DOWNSTREAM Nha1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1472821	2L_1472821_SNP [dm3] 2L_1472821_SNP [dm6]	T	A	3.168e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	9141086	2L_9141086_SNP [dm3] 2L_9141086_SNP [dm6]	T	A	3.168e^-4	0.903	INTRON CG32982
2L	8312263	2L_8312263_SNP [dm3] 2L_8312263_SNP [dm6]	A	G	3.173e^-4	0.903	INTRON CG7806
2L	12317470	2L_12317470_SNP [dm3] 2L_12317470_SNP [dm6]	T	C	3.174e^-4	0.903	UPSTREAM CR45283 INTERGENIC
2R	8414178	2R_8414178_SNP [dm3] 2R_12526673_SNP [dm6]	T	A	3.176e^-4	0.903	INTERGENIC
3L	2551391	3L_2551391_SNP [dm3] 3L_2551391_SNP [dm6]	T	C	3.183e^-4	0.903	INTRON Spn
2L	14531158	2L_14531158_DEL [dm3] 2L_14531158_DEL [dm6]	AGGGA	A	3.188e^-4	0.903	UPSTREAM tRNA:G3:35Bd & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25660226	3R_25660226_SNP [dm3] 3R_29834504_SNP [dm6]	G	A	3.189e^-4	0.903	SYNONYMOUS_CODING Atg16 UPSTREAM Atg16	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4633396	3L_4633396_SNP [dm3] 3L_4633396_SNP [dm6]	A	C	3.203e^-4	0.903	INTRON axo
2L	8309095	2L_8309095_SNP [dm3] 2L_8309095_SNP [dm6]	T	A	3.213e^-4	0.903	SYNONYMOUS_CODING CG7818 UPSTREAM Ostgamma DOWNSTREAM CG7810	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	4201529	2L_4201529_SNP [dm3] 2L_4201529_SNP [dm6]	T	C	3.219e^-4	0.903	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_inv mE1_TFBS_sens
X	16343064	X_16343064_SNP [dm3] X_16449031_SNP [dm6]	G	T	3.221e^-4	0.903	UPSTREAM Rbp2 & 1 other INTRON Rbp2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	18193172	2R_18193172_SNP [dm3] 2R_22305667_SNP [dm6]	G	A	3.223e^-4	0.903	INTRON wdp
3R	4467820	3R_4467820_SNP [dm3] 3R_8642098_SNP [dm6]	A	T	3.229e^-4	0.903	DOWNSTREAM tRNA:Y1:85Ae & 2 others INTERGENIC
2L	13124585	2L_13124585_SNP [dm3] 2L_13124585_SNP [dm6]	C	T	3.230e^-4	0.903	INTERGENIC
3L	1141862	3L_1141862_SNP [dm3] 3L_1141862_SNP [dm6]	C	A	3.232e^-4	0.903	UTR_3_PRIME bab2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	17832437	3L_17832437_SNP [dm3] 3L_17839337_SNP [dm6]	C	A	3.234e^-4	0.903	UTR_3_PRIME Grd DOWNSTREAM CG5577
2L	9135912	2L_9135912_SNP [dm3] 2L_9135912_SNP [dm6]	G	T	3.238e^-4	0.903	INTRON CG32982
3L	18548241	3L_18548241_SNP [dm3] 3L_18555141_SNP [dm6]	T	G	3.239e^-4	0.903	INTERGENIC
2L	14860316	2L_14860316_SNP [dm3] 2L_14860316_SNP [dm6]	A	T	3.248e^-4	0.903	INTERGENIC
2L	13941369	2L_13941369_SNP [dm3] 2L_13941369_SNP [dm6]	A	G	3.252e^-4	0.903	INTRON Ance-3
3R	21210312	3R_21210312_SNP [dm3] 3R_25384590_SNP [dm6]	T	A	3.260e^-4	0.903	UTR_3_PRIME CG31437 DOWNSTREAM Fur1 INTRON Fur1
3L	5960875	3L_5960875_SNP [dm3] 3L_5967775_SNP [dm6]	G	T	3.261e^-4	0.903	UTR_3_PRIME CG10479	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	1145487	2L_1145487_SNP [dm3] 2L_1145487_SNP [dm6]	C	T	3.268e^-4	0.903	SYNONYMOUS_CODING MFS3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9509726	2R_9509726_SNP [dm3] 2R_13622221_SNP [dm6]	T	A	3.268e^-4	0.903	UPSTREAM fas INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2L	6329837	2L_6329837_SNP [dm3] 2L_6329837_SNP [dm6]	G	A	3.269e^-4	0.903	INTRON PDZ-GEF	TF binding site mE1_TFBS_cad
2R	9738483	2R_9738483_SNP [dm3] 2R_13850978_SNP [dm6]	A	G	3.275e^-4	0.903	NON_SYNONYMOUS_CODING CG30485
2L	9851853	2L_9851853_SNP [dm3] 2L_9851853_SNP [dm6]	T	A	3.277e^-4	0.903	INTRON nAChRalpha6
2R	16362089	2R_16362089_DEL [dm3] 2R_20474584_DEL [dm6]	TT	T	3.280e^-4	0.903	INTRON CG12484
3R	18793430	3R_18793430_SNP [dm3] 3R_22967708_SNP [dm6]	A	C	3.283e^-4	0.903	UTR_3_PRIME Tpl94D	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	24454854	3R_24454854_INS [dm3] 3R_28629132_INS [dm6]	A	ATCTCA	3.290e^-4	0.903	INTRON CG10011
2R	8414177	2R_8414177_SNP [dm3] 2R_12526672_SNP [dm6]	G	C	3.290e^-4	0.903	INTERGENIC
3L	5466544	3L_5466544_SNP [dm3] 3L_5473444_SNP [dm6]	A	T	3.301e^-4	0.903	INTERGENIC
3L	3029123	3L_3029123_SNP [dm3] 3L_3029123_SNP [dm6]	T	C	3.305e^-4	0.903	INTERGENIC
3L	3406515	3L_3406515_SNP [dm3] 3L_3406515_SNP [dm6]	T	G	3.311e^-4	0.903	INTRON sty
2R	9749734	2R_9749734_SNP [dm3] 2R_13862229_SNP [dm6]	C	T	3.314e^-4	0.903	NON_SYNONYMOUS_CODING CG13344 UPSTREAM CG16935	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2R	9746422	2R_9746422_SNP [dm3] 2R_13858917_SNP [dm6]	C	T	3.320e^-4	0.903	UPSTREAM Uba3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	8414184	2R_8414184_SNP [dm3] 2R_12526679_SNP [dm6]	A	C	3.324e^-4	0.903	INTERGENIC
X	8871130	X_8871130_INS [dm3] X_8977097_INS [dm6]	A	AAA	3.333e^-4	0.903	DOWNSTREAM CR43836 INTRON rdgA & 1 other
2L	9279483	2L_9279483_SNP [dm3] 2L_9279483_SNP [dm6]	A	G	3.341e^-4	0.903	INTRON Ggamma30A
2L	8324477	2L_8324477_SNP [dm3] 2L_8324477_SNP [dm6]	C	A	3.345e^-4	0.903	INTRON CG7781
2R	19299817	2R_19299817_SNP [dm3] 2R_23412294_SNP [dm6]	A	T	3.345e^-4	0.903	DOWNSTREAM CG9812 INTERGENIC
2L	10936941	2L_10936941_SNP [dm3] 2L_10936941_SNP [dm6]	A	G	3.348e^-4	0.903	UPSTREAM CG14072 INTRON dpr2 & 1 other
X	14990849	X_14990849_SNP [dm3] X_15096816_SNP [dm6]	A	T	3.349e^-4	0.903	UPSTREAM CG9072 INTRON Rab3-GEF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8800815	2L_8800815_SNP [dm3] 2L_8800815_SNP [dm6]	C	T	3.360e^-4	0.903	INTERGENIC
3L	3670926	3L_3670926_SNP [dm3] 3L_3670926_SNP [dm6]	C	T	3.361e^-4	0.903	INTERGENIC
X	11875288	X_11875288_SNP [dm3] X_11981255_SNP [dm6]	A	T	3.366e^-4	0.903	UPSTREAM cac INTRON cac	TF binding site mE1_TFBS_HSA
3L	1332284	3L_1332284_DEL [dm3] 3L_1332284_DEL [dm6]	TAT	T	3.370e^-4	0.903	UTR_3_PRIME msd1 DOWNSTREAM msd5 & 2 others
3R	24502441	3R_24502441_SNP [dm3] 3R_28676719_SNP [dm6]	C	G	3.378e^-4	0.903	INTRON CG9990
2R	1085203	2R_1085203_DEL [dm3] 2R_5197698_DEL [dm6]	TT	T	3.390e^-4	0.903	INTRON Nipped-A
2R	1085206	2R_1085206_SNP [dm3] 2R_5197701_SNP [dm6]	T	A	3.390e^-4	0.903	INTRON Nipped-A
2R	8414163	2R_8414163_SNP [dm3] 2R_12526658_SNP [dm6]	G	C	3.395e^-4	0.903	INTERGENIC
3R	24306392	3R_24306392_SNP [dm3] 3R_28480670_SNP [dm6]	T	C	3.398e^-4	0.903	INTERGENIC
3R	10939546	3R_10939546_SNP [dm3] 3R_15113824_SNP [dm6]	C	G	3.419e^-4	0.903	INTRON CG42788
3L	9286020	3L_9286020_SNP [dm3] 3L_9292920_SNP [dm6]	C	T	3.421e^-4	0.903	INTERGENIC
3R	24266236	3R_24266236_SNP [dm3] 3R_28440514_SNP [dm6]	A	C	3.424e^-4	0.903	INTRON beat-VI
2L	9147081	2L_9147081_SNP [dm3] 2L_9147081_SNP [dm6]	G	T	3.434e^-4	0.903	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12440875	2L_12440875_SNP [dm3] 2L_12440875_SNP [dm6]	C	T	3.434e^-4	0.903	UTR_3_PRIME Elf DOWNSTREAM Oatp33Ea & 1 other
2L	2812216	2L_2812216_SNP [dm3] 2L_2812216_SNP [dm6]	G	C	3.435e^-4	0.903	UTR_3_PRIME daw UPSTREAM CG2964 DOWNSTREAM daw	TF binding site mE1_TFBS_bab1
X	12069424	X_12069424_SNP [dm3] X_12175391_SNP [dm6]	G	A	3.435e^-4	0.903	INTRON Ten-a
3L	2479864	3L_2479864_SNP [dm3] 3L_2479864_SNP [dm6]	G	A	3.435e^-4	0.903	INTRON CG45186	TF binding site BDTNP1_TFBS_twi
3R	1314322	3R_1314322_SNP [dm3] 3R_5488600_SNP [dm6]	T	C	3.438e^-4	0.903	SYNONYMOUS_CODING CG31550 UTR_3_PRIME CG31550 DOWNSTREAM CG31547
3R	18605620	3R_18605620_SNP [dm3] 3R_22779898_SNP [dm6]	C	T	3.441e^-4	0.903	UPSTREAM CR43654 INTRON CG7029 EXON CR43654	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	1010473	2R_1010473_SNP [dm3] 2R_5122968_SNP [dm6]	G	T	3.446e^-4	0.903	UPSTREAM gus INTRON gus	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
2L	15307486	2L_15307486_SNP [dm3] 2L_15307486_SNP [dm6]	G	A	3.446e^-4	0.903	INTERGENIC
3R	24306605	3R_24306605_SNP [dm3] 3R_28480883_SNP [dm6]	C	A	3.448e^-4	0.903	INTERGENIC
2L	1965013	2L_1965013_DEL [dm3] 2L_1965013_DEL [dm6]	CCGAA	C	3.450e^-4	0.903	UPSTREAM tRNA:CR31942 INTRON erm	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3960527	X_3960527_SNP [dm3] X_4066494_SNP [dm6]	G	T	3.457e^-4	0.903	INTERGENIC
3L	3846884	3L_3846884_DEL [dm3] 3L_3846884_DEL [dm6]	CTATT	G	3.463e^-4	0.903	INTRON Awh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
3L	4712244	3L_4712244_SNP [dm3] 3L_4712244_SNP [dm6]	A	T	3.472e^-4	0.903	INTRON RhoGEF64C
2R	4484333	2R_4484333_SNP [dm3] 2R_8596828_SNP [dm6]	A	T	3.473e^-4	0.903	DOWNSTREAM CG8735 INTERGENIC
2R	5192070	2R_5192070_SNP [dm3] 2R_9304565_SNP [dm6]	C	T	3.482e^-4	0.903	INTRON Myd88
2L	12579652	2L_12579652_SNP [dm3] 2L_12579652_SNP [dm6]	T	C	3.485e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	2182594	3L_2182594_SNP [dm3] 3L_2182594_SNP [dm6]	A	G	3.487e^-4	0.903	INTERGENIC
3L	7332133	3L_7332133_SNP [dm3] 3L_7339033_SNP [dm6]	A	G	3.492e^-4	0.903	UTR_5_PRIME eco UPSTREAM lark & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	10589020	X_10589020_SNP [dm3] X_10694987_SNP [dm6]	A	G	3.495e^-4	0.903	INTRON X11Lbeta
2L	9576780	2L_9576780_SNP [dm3] 2L_9576780_SNP [dm6]	C	T	3.499e^-4	0.903	UPSTREAM Mtpalpha INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
3L	2921401	3L_2921401_SNP [dm3] 3L_2921401_SNP [dm6]	A	G	3.500e^-4	0.903	INTRON Shab
3R	8215096	3R_8215096_SNP [dm3] 3R_12389374_SNP [dm6]	T	G	3.500e^-4	0.903	DOWNSTREAM CG33098 INTRON CG34402
2L	2723319	2L_2723319_SNP [dm3] 2L_2723319_SNP [dm6]	C	T	3.502e^-4	0.903	INTERGENIC
3R	1056095	3R_1056095_SNP [dm3] 3R_5230373_SNP [dm6]	T	G	3.509e^-4	0.903	SYNONYMOUS_CODING Kat60	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	7901174	X_7901174_SNP [dm3] X_8007141_SNP [dm6]	G	C	3.509e^-4	0.903	INTRON Tbh	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	11299555	2R_11299555_SNP [dm3] 2R_15412050_SNP [dm6]	A	G	3.513e^-4	0.903	INTRON CG43729
X	4682635	X_4682635_SNP [dm3] X_4788602_SNP [dm6]	A	G	3.519e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	16665497	2R_16665497_DEL [dm3] 2R_20777992_DEL [dm6]	TT	T	3.527e^-4	0.903	UPSTREAM CG43710 DOWNSTREAM CG43711 INTERGENIC
3L	5958686	3L_5958686_SNP [dm3] 3L_5965586_SNP [dm6]	T	G	3.531e^-4	0.903	INTERGENIC
2R	17820800	2R_17820800_SNP [dm3] 2R_21933295_SNP [dm6]	T	A	3.540e^-4	0.903	INTRON Fili
2L	14222485	2L_14222485_SNP [dm3] 2L_14222485_SNP [dm6]	C	A	3.545e^-4	0.903	INTRON Dyrk2
3R	24107211	3R_24107211_SNP [dm3] 3R_28281489_SNP [dm6]	A	T	3.552e^-4	0.903	INTERGENIC
X	20834370	X_20834370_SNP [dm3] X_20963343_SNP [dm6]	G	A	3.552e^-4	0.903	SYNONYMOUS_CODING Ser6
2R	11299565	2R_11299565_SNP [dm3] 2R_15412060_SNP [dm6]	T	A	3.556e^-4	0.903	INTRON CG43729
X	12939489	X_12939489_SNP [dm3] X_13045456_SNP [dm6]	A	C	3.560e^-4	0.903	INTRON rad
2L	5244841	2L_5244841_SNP [dm3] 2L_5244841_SNP [dm6]	A	T	3.564e^-4	0.903	UPSTREAM tkv DOWNSTREAM CR14033 INTRON tkv
3L	1334340	3L_1334340_SNP [dm3] 3L_1334340_SNP [dm6]	A	T	3.571e^-4	0.903	SYNONYMOUS_CODING CG2211 UPSTREAM l_3_02640	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	9167498	2L_9167498_SNP [dm3] 2L_9167498_SNP [dm6]	A	G	3.572e^-4	0.903	UPSTREAM CG9586 INTRON tai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	8669368	2R_8669368_SNP [dm3] 2R_12781863_SNP [dm6]	A	T	3.573e^-4	0.903	INTRON sca	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	9739371	2R_9739371_SNP [dm3] 2R_13851866_SNP [dm6]	T	G	3.575e^-4	0.903	NON_SYNONYMOUS_CODING CG30485
2R	9739374	2R_9739374_SNP [dm3] 2R_13851869_SNP [dm6]	G	A	3.575e^-4	0.903	NON_SYNONYMOUS_CODING CG30485
3L	4099309	3L_4099309_DEL [dm3] 3L_4099309_DEL [dm6]	GCAGACTTCTAT...	G	3.587e^-4	0.903	INTRON CG14995	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2L	6860406	2L_6860406_SNP [dm3] 2L_6860406_SNP [dm6]	A	G	3.588e^-4	0.903	SYNONYMOUS_CODING l_2_k09022 DOWNSTREAM Nha1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17933836	2R_17933836_SNP [dm3] 2R_22046331_SNP [dm6]	T	A	3.591e^-4	0.903	INTERGENIC
3R	13293317	3R_13293317_SNP [dm3] 3R_17467595_SNP [dm6]	G	A	3.592e^-4	0.903	INTERGENIC
2R	9754853	2R_9754853_SNP [dm3] 2R_13867348_SNP [dm6]	C	A	3.595e^-4	0.903	INTRON shot
3R	1311123	3R_1311123_SNP [dm3] 3R_5485401_SNP [dm6]	G	T	3.596e^-4	0.903	UPSTREAM CG31550 DOWNSTREAM Hcs INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	20884373	2L_20884373_INS [dm3] 2L_20884373_INS [dm6]	A	ATTCCACTTACAACA...	3.597e^-4	0.903	INTRON sky & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	1043529	3R_1043529_SNP [dm3] 3R_5217807_SNP [dm6]	T	A	3.611e^-4	0.903	UTR_3_PRIME Prosbeta2R2 UPSTREAM cno	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3L	1334850	3L_1334850_SNP [dm3] 3L_1334850_SNP [dm6]	C	A	3.612e^-4	0.903	START_GAINED CG2211 UTR_5_PRIME CG2211 UPSTREAM l_3_02640 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7217040	3L_7217040_SNP [dm3] 3L_7223940_SNP [dm6]	G	T	3.614e^-4	0.903	DOWNSTREAM CR45410 INTERGENIC
3R	24253695	3R_24253695_SNP [dm3] 3R_28427973_SNP [dm6]	A	G	3.614e^-4	0.903	INTRON beat-VI
2R	13168030	2R_13168030_SNP [dm3] 2R_17280525_SNP [dm6]	T	C	3.622e^-4	0.903	INTRON mbl
2L	12284412	2L_12284412_DEL [dm3] 2L_12284412_DEL [dm6]	CCTCAAACGAAAAC...	C	3.624e^-4	0.903	INTRON aret
3R	15879016	3R_15879016_SNP [dm3] 3R_20053294_SNP [dm6]	A	C	3.624e^-4	0.903	INTRON CG17193	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sbb
2R	9742835	2R_9742835_SNP [dm3] 2R_13855330_SNP [dm6]	T	C	3.629e^-4	0.903	SYNONYMOUS_CODING CG6553 UPSTREAM CG6543 DOWNSTREAM tum EXON CR44367
2L	10797002	2L_10797002_SNP [dm3] 2L_10797002_SNP [dm6]	A	G	3.632e^-4	0.903	INTRON CG31869
2L	8234191	2L_8234191_SNP [dm3] 2L_8234191_SNP [dm6]	A	G	3.633e^-4	0.903	INTRON Pvr
3R	19840908	3R_19840908_SNP [dm3] 3R_24015186_SNP [dm6]	G	C	3.644e^-4	0.903	INTRON KrT95D
2L	8791523	2L_8791523_SNP [dm3] 2L_8791523_SNP [dm6]	G	A	3.645e^-4	0.903	INTERGENIC
3L	5140873	3L_5140873_SNP [dm3] 3L_5147773_SNP [dm6]	G	C	3.655e^-4	0.903	NON_SYNONYMOUS_CODING Aats-ala-m	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2404849	3L_2404849_SNP [dm3] 3L_2404849_SNP [dm6]	T	G	3.656e^-4	0.903	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_sens
2R	11299576	2R_11299576_MNP [dm3] 2R_15412071_MNP [dm6]	AAT	TCG	3.659e^-4	0.903	INTRON CG43729
2L	6237528	2L_6237528_SNP [dm3] 2L_6237528_SNP [dm6]	C	T	3.662e^-4	0.903	INTERGENIC
2R	1007471	2R_1007471_SNP [dm3] 2R_5119966_SNP [dm6]	T	C	3.670e^-4	0.903	INTRON gus
3R	923617	3R_923617_SNP [dm3] 3R_5097895_SNP [dm6]	T	C	3.673e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8412059	2R_8412059_SNP [dm3] 2R_12524554_SNP [dm6]	C	T	3.684e^-4	0.903	INTERGENIC
X	18657372	X_18657372_SNP [dm3] X_18763339_SNP [dm6]	G	A	3.689e^-4	0.903	INTERGENIC
2R	10549216	2R_10549216_SNP [dm3] 2R_14661711_SNP [dm6]	C	A	3.706e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24326207	3R_24326207_SNP [dm3] 3R_28500485_SNP [dm6]	T	C	3.711e^-4	0.903	INTRON Dhc98D
3L	5960786	3L_5960786_SNP [dm3] 3L_5967686_SNP [dm6]	G	A	3.715e^-4	0.903	UTR_3_PRIME CG10479	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2L	8350819	2L_8350819_SNP [dm3] 2L_8350819_SNP [dm6]	C	A	3.715e^-4	0.903	UTR_3_PRIME CG7778 DOWNSTREAM CG7778	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2L	14222492	2L_14222492_SNP [dm3] 2L_14222492_SNP [dm6]	G	A	3.718e^-4	0.903	INTRON Dyrk2
3R	5988341	3R_5988341_SNP [dm3] 3R_10162619_SNP [dm6]	A	T	3.718e^-4	0.903	INTRON Best1
2L	7068653	2L_7068653_SNP [dm3] 2L_7068653_SNP [dm6]	G	A	3.726e^-4	0.903	DOWNSTREAM Pvf2 INTRON CG11289	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20239937	X_20239937_SNP [dm3] X_20368910_SNP [dm6]	G	T	3.731e^-4	0.903	INTERGENIC
2L	6236620	2L_6236620_SNP [dm3] 2L_6236620_SNP [dm6]	G	C	3.740e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
3L	4852921	3L_4852921_SNP [dm3] 3L_4852921_SNP [dm6]	C	G	3.757e^-4	0.903	UPSTREAM CG32237 INTERGENIC
X	21363416	X_21363416_SNP [dm3] X_21492389_SNP [dm6]	A	G	3.760e^-4	0.903	INTERGENIC
3R	11030804	3R_11030804_SNP [dm3] 3R_15205082_SNP [dm6]	C	T	3.776e^-4	0.903	INTRON Spn88Ea
2L	12647577	2L_12647577_SNP [dm3] 2L_12647577_SNP [dm6]	T	A	3.777e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	3457104	X_3457104_SNP [dm3] X_3563071_SNP [dm6]	T	C	3.787e^-4	0.903	INTRON CG32791 & 1 other
2L	19398679	2L_19398679_SNP [dm3] 2L_19398679_SNP [dm6]	T	A	3.788e^-4	0.903	UPSTREAM CG17544 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17022312	2R_17022312_SNP [dm3] 2R_21134807_SNP [dm6]	C	T	3.790e^-4	0.903	INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13642786	2R_13642786_SNP [dm3] 2R_17755281_SNP [dm6]	G	A	3.792e^-4	0.903	SYNONYMOUS_CODING CG6385	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19617170	2R_19617170_SNP [dm3] 2R_23729647_SNP [dm6]	C	T	3.794e^-4	0.903	INTRON Sesn
3L	11698492	3L_11698492_SNP [dm3] 3L_11705392_SNP [dm6]	C	G	3.796e^-4	0.903	INTRON CG11658
3L	22249222	3L_22249222_SNP [dm3] 3L_22256122_SNP [dm6]	C	A	3.809e^-4	0.903	INTERGENIC
2L	14080532	2L_14080532_SNP [dm3] 2L_14080532_SNP [dm6]	C	A	3.811e^-4	0.903	SPLICE_SITE_REGION nAChRalpha5 INTRON nAChRalpha5
3L	8030342	3L_8030342_SNP [dm3] 3L_8037242_SNP [dm6]	A	T	3.811e^-4	0.903	INTRON nmo	TF binding site mE1_TFBS_inv
2L	9136442	2L_9136442_SNP [dm3] 2L_9136442_SNP [dm6]	A	T	3.813e^-4	0.903	INTRON CG32982
3R	1293243	3R_1293243_SNP [dm3] 3R_5467521_SNP [dm6]	T	A	3.821e^-4	0.903	UPSTREAM CG12162 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
X	14589130	X_14589130_SNP [dm3] X_14695097_SNP [dm6]	A	T	3.829e^-4	0.903	INTRON NetB
3R	15829696	3R_15829696_SNP [dm3] 3R_20003974_SNP [dm6]	G	A	3.842e^-4	0.903	INTRON Hs6st	TF binding site mE1_TFBS_zfh1
3L	5958691	3L_5958691_SNP [dm3] 3L_5965591_SNP [dm6]	C	A	3.842e^-4	0.903	INTERGENIC
3L	2180936	3L_2180936_SNP [dm3] 3L_2180936_SNP [dm6]	G	T	3.845e^-4	0.903	INTERGENIC
2R	9742816	2R_9742816_SNP [dm3] 2R_13855311_SNP [dm6]	C	T	3.850e^-4	0.903	NON_SYNONYMOUS_CODING CG6553 UPSTREAM CG6543 DOWNSTREAM tum EXON CR44367
2L	1455155	2L_1455155_SNP [dm3] 2L_1455155_SNP [dm6]	A	C	3.851e^-4	0.903	INTERGENIC
2L	14530367	2L_14530367_SNP [dm3] 2L_14530367_SNP [dm6]	C	A	3.861e^-4	0.903	DOWNSTREAM tRNA:G3:35Bd & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	16812340	2R_16812340_SNP [dm3] 2R_20924835_SNP [dm6]	G	T	3.863e^-4	0.903	INTRON Rx
2R	6678411	2R_6678411_SNP [dm3] 2R_10790906_SNP [dm6]	G	T	3.865e^-4	0.903	UPSTREAM mthl13 INTRON CG33144
X	5115520	X_5115520_SNP [dm3] X_5221487_SNP [dm6]	T	A	3.872e^-4	0.903	INTRON CG15465 & 1 other
2L	14002639	2L_14002639_SNP [dm3] 2L_14002639_SNP [dm6]	G	T	3.873e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_sbb
2R	13786495	2R_13786495_SNP [dm3] 2R_17898990_SNP [dm6]	C	G	3.879e^-4	0.903	INTRON Elk	TF binding site BDTNP1_TFBS_twi
2L	3341756	2L_3341756_SNP [dm3] 2L_3341756_SNP [dm6]	A	G	3.892e^-4	0.903	INTRON E23
2R	14323580	2R_14323580_SNP [dm3] 2R_18436075_SNP [dm6]	T	G	3.896e^-4	0.903	INTRON CG30118	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16789936	2R_16789936_SNP [dm3] 2R_20902431_SNP [dm6]	A	G	3.906e^-4	0.903	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	14378908	X_14378908_SNP [dm3] X_14484875_SNP [dm6]	T	G	3.915e^-4	0.903	INTERGENIC
2L	11185661	2L_11185661_SNP [dm3] 2L_11185661_SNP [dm6]	G	A	3.920e^-4	0.903	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	20939007	2L_20939007_SNP [dm3] 2L_20939007_SNP [dm6]	C	T	3.930e^-4	0.903	INTERGENIC
2L	19398681	2L_19398681_SNP [dm3] 2L_19398681_SNP [dm6]	G	A	3.940e^-4	0.903	UPSTREAM CG17544 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	23954900	3R_23954900_SNP [dm3] 3R_28129178_SNP [dm6]	C	T	3.943e^-4	0.903	INTERGENIC
3L	2839205	3L_2839205_SNP [dm3] 3L_2839205_SNP [dm6]	A	C	3.956e^-4	0.903	INTRON CG43444	TF binding site BDTNP1_TFBS_dl
2L	936062	2L_936062_SNP [dm3] 2L_936062_SNP [dm6]	G	A	3.957e^-4	0.903	INTRON CG4341	TF binding site mE1_TFBS_Trl
X	10191969	X_10191969_SNP [dm3] X_10297936_SNP [dm6]	G	A	3.960e^-4	0.903	INTRON alpha-Man-I
2L	1296737	2L_1296737_SNP [dm3] 2L_1296737_SNP [dm6]	T	A	3.961e^-4	0.903	DOWNSTREAM robo3 INTERGENIC
2R	8640392	2R_8640392_SNP [dm3] 2R_12752887_SNP [dm6]	A	G	3.962e^-4	0.903	SYNONYMOUS_CODING mos DOWNSTREAM Taz
2L	8366946	2L_8366946_SNP [dm3] 2L_8366946_SNP [dm6]	G	A	3.966e^-4	0.903	INTRON Pp2A-29B	TF binding site BDTNP1_TFBS_dl
3R	10912972	3R_10912972_SNP [dm3] 3R_15087250_SNP [dm6]	A	G	3.969e^-4	0.903	INTRON CG6966
2R	16926785	2R_16926785_SNP [dm3] 2R_21039280_SNP [dm6]	A	G	3.969e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5309445	2R_5309445_SNP [dm3] 2R_9421940_SNP [dm6]	G	A	3.975e^-4	0.903	DOWNSTREAM CG13955 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	11423094	2L_11423094_SNP [dm3] 2L_11423094_SNP [dm6]	G	T	3.991e^-4	0.903	INTERGENIC
2R	13642783	2R_13642783_SNP [dm3] 2R_17755278_SNP [dm6]	T	G	3.992e^-4	0.903	SYNONYMOUS_CODING CG6385	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	2473319	X_2473319_SNP [dm3] X_2579286_SNP [dm6]	T	G	3.992e^-4	0.903	UTR_3_PRIME Vha36-3 DOWNSTREAM Pdfr
2R	19973832	2R_19973832_SNP [dm3] 2R_24086309_SNP [dm6]	C	T	3.993e^-4	0.903	UPSTREAM snama DOWNSTREAM CG16786 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2L	8309098	2L_8309098_SNP [dm3] 2L_8309098_SNP [dm6]	T	A	3.996e^-4	0.903	SYNONYMOUS_CODING CG7818 UPSTREAM Ostgamma DOWNSTREAM CG7810	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	4053332	2L_4053332_SNP [dm3] 2L_4053332_SNP [dm6]	T	C	4.001e^-4	0.903	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2937743	3L_2937743_DEL [dm3] 3L_2937743_DEL [dm6]	TT	T	4.006e^-4	0.903	INTRON Shab
3R	23592774	3R_23592774_SNP [dm3] 3R_27767052_SNP [dm6]	T	C	4.019e^-4	0.903	DOWNSTREAM CG34353 INTERGENIC
2L	10851226	2L_10851226_SNP [dm3] 2L_10851226_SNP [dm6]	T	A	4.024e^-4	0.903	UPSTREAM porin INTRON CG43129	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	9775536	X_9775536_SNP [dm3] X_9881503_SNP [dm6]	C	T	4.029e^-4	0.903	UPSTREAM CG9689 DOWNSTREAM CG9686 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	9440565	2R_9440565_SNP [dm3] 2R_13553060_SNP [dm6]	C	A	4.040e^-4	0.903	SYNONYMOUS_CODING CG33156 UPSTREAM CG33156
3L	2942122	3L_2942122_SNP [dm3] 3L_2942122_SNP [dm6]	T	C	4.045e^-4	0.903	INTRON Shab
3L	6610855	3L_6610855_SNP [dm3] 3L_6617755_SNP [dm6]	T	A	4.049e^-4	0.903	INTRON CG8398
2R	19298282	2R_19298282_SNP [dm3] 2R_23410759_SNP [dm6]	T	C	4.051e^-4	0.903	INTERGENIC
2L	14189445	2L_14189445_SNP [dm3] 2L_14189445_SNP [dm6]	A	C	4.052e^-4	0.903	INTRON Dyrk2
3R	1051580	3R_1051580_SNP [dm3] 3R_5225858_SNP [dm6]	T	C	4.057e^-4	0.903	UPSTREAM Vps37B DOWNSTREAM CG14664 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	20913389	3R_20913389_SNP [dm3] 3R_25087667_SNP [dm6]	A	C	4.061e^-4	0.903	INTERGENIC
X	14589222	X_14589222_SNP [dm3] X_14695189_SNP [dm6]	C	A	4.070e^-4	0.903	INTRON NetB
3L	1040585	3L_1040585_SNP [dm3] 3L_1040585_SNP [dm6]	T	C	4.074e^-4	0.903	INTRON bab1	TF binding site mE1_TFBS_cad
2L	20402446	2L_20402446_SNP [dm3] 2L_20402446_SNP [dm6]	G	T	4.087e^-4	0.903	INTRON CG10947
2L	12547145	2L_12547145_SNP [dm3] 2L_12547145_SNP [dm6]	A	G	4.095e^-4	0.903	UPSTREAM bun INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	10465771	2L_10465771_DEL [dm3] 2L_10465771_DEL [dm6]	TT	T	4.101e^-4	0.903	INTRON RluA-1
X	4744932	X_4744932_SNP [dm3] X_4850899_SNP [dm6]	T	G	4.122e^-4	0.903	INTRON CG42594
3R	19081941	3R_19081941_SNP [dm3] 3R_23256219_SNP [dm6]	A	G	4.124e^-4	0.903	SYNONYMOUS_CODING wda	TF binding site mE1_TFBS_cad
2R	19297529	2R_19297529_SNP [dm3] 2R_23410006_SNP [dm6]	A	G	4.128e^-4	0.903	INTERGENIC
X	20239847	X_20239847_SNP [dm3] X_20368820_SNP [dm6]	T	C	4.129e^-4	0.903	INTERGENIC
2L	15273175	2L_15273175_SNP [dm3] 2L_15273175_SNP [dm6]	T	C	4.129e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	12181531	2L_12181531_INS [dm3] 2L_12181531_INS [dm6]	A	AA	4.139e^-4	0.903	INTRON aret
2L	5537595	2L_5537595_SNP [dm3] 2L_5537595_SNP [dm6]	G	A	4.140e^-4	0.903	SYNONYMOUS_CODING CG14015 UPSTREAM tomb	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	2479416	3L_2479416_SNP [dm3] 3L_2479416_SNP [dm6]	A	G	4.143e^-4	0.903	UPSTREAM Cyp4d20 INTRON CG45186
3L	7389328	3L_7389328_SNP [dm3] 3L_7396228_SNP [dm6]	T	C	4.151e^-4	0.903	UPSTREAM CG32379 DOWNSTREAM CG8563 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	9286249	2L_9286249_SNP [dm3] 2L_9286249_SNP [dm6]	A	G	4.154e^-4	0.903	INTRON Ggamma30A
2L	9286443	2L_9286443_SNP [dm3] 2L_9286443_SNP [dm6]	T	A	4.154e^-4	0.903	INTRON Ggamma30A
2L	9286456	2L_9286456_SNP [dm3] 2L_9286456_SNP [dm6]	A	C	4.154e^-4	0.903	INTRON Ggamma30A
2L	9286460	2L_9286460_SNP [dm3] 2L_9286460_SNP [dm6]	C	A	4.154e^-4	0.903	INTRON Ggamma30A
2L	9286576	2L_9286576_SNP [dm3] 2L_9286576_SNP [dm6]	T	C	4.154e^-4	0.903	INTRON Ggamma30A
2L	9286618	2L_9286618_SNP [dm3] 2L_9286618_SNP [dm6]	A	T	4.154e^-4	0.903	INTRON Ggamma30A
2R	17125348	2R_17125348_SNP [dm3] 2R_21237843_SNP [dm6]	G	A	4.179e^-4	0.903	INTRON ASPP
2L	9399312	2L_9399312_SNP [dm3] 2L_9399312_SNP [dm6]	C	A	4.197e^-4	0.903	INTRON Shawl
X	20233770	X_20233770_SNP [dm3] X_20362743_SNP [dm6]	T	A	4.197e^-4	0.903	INTERGENIC
3L	2184890	3L_2184890_SNP [dm3] 3L_2184890_SNP [dm6]	A	T	4.200e^-4	0.903	INTERGENIC
2L	8784718	2L_8784718_SNP [dm3] 2L_8784718_SNP [dm6]	G	C	4.204e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	7717927	2L_7717927_SNP [dm3] 2L_7717927_SNP [dm6]	T	C	4.206e^-4	0.903	SYNONYMOUS_CODING CG13793
3L	5958701	3L_5958701_SNP [dm3] 3L_5965601_SNP [dm6]	A	T	4.207e^-4	0.903	INTERGENIC
2R	19299680	2R_19299680_SNP [dm3] 2R_23412157_SNP [dm6]	C	T	4.208e^-4	0.903	DOWNSTREAM CG9812 INTERGENIC
3R	19180494	3R_19180494_SNP [dm3] 3R_23354772_SNP [dm6]	T	C	4.210e^-4	0.903	DOWNSTREAM ATPsyn-Cf6 INTRON DNApol-epsilon	TF binding site mE1_TFBS_chinmo
2L	20474784	2L_20474784_SNP [dm3] 2L_20474784_SNP [dm6]	G	T	4.217e^-4	0.903	INTRON CR44980
3L	2479401	3L_2479401_SNP [dm3] 3L_2479401_SNP [dm6]	G	A	4.246e^-4	0.903	UPSTREAM Cyp4d20 INTRON CG45186
3R	24284578	3R_24284578_SNP [dm3] 3R_28458856_SNP [dm6]	G	C	4.251e^-4	0.903	INTRON beat-VI
3R	24287187	3R_24287187_SNP [dm3] 3R_28461465_SNP [dm6]	C	T	4.251e^-4	0.903	INTRON beat-VI
2R	12128459	2R_12128459_INS [dm3] 2R_16240954_INS [dm6]	T	TT	4.251e^-4	0.903	UTR_3_PRIME CG15708 UPSTREAM krimp
3R	10561170	3R_10561170_SNP [dm3] 3R_14735448_SNP [dm6]	T	C	4.253e^-4	0.903	INTRON eff	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	10457726	2L_10457726_SNP [dm3] 2L_10457726_SNP [dm6]	C	T	4.268e^-4	0.903	UTR_5_PRIME LM408 UPSTREAM CG5322	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	983450	3R_983450_SNP [dm3] 3R_5157728_SNP [dm6]	G	T	4.274e^-4	0.903	INTRON dpr16
2L	10897953	2L_10897953_INS [dm3] 2L_10897953_INS [dm6]	T	TT	4.276e^-4	0.903	INTERGENIC
2L	17541336	2L_17541336_SNP [dm3] 2L_17541336_SNP [dm6]	C	G	4.284e^-4	0.903	UPSTREAM CR43304 INTERGENIC
2L	9454848	2L_9454848_SNP [dm3] 2L_9454848_SNP [dm6]	T	C	4.293e^-4	0.903	INTRON numb	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2270689	3L_2270689_SNP [dm3] 3L_2270689_SNP [dm6]	G	A	4.294e^-4	0.903	DOWNSTREAM CG32302 INTRON yellow-g	TF binding site mE1_TFBS_HSA
2R	19010021	2R_19010021_SNP [dm3] 2R_23122498_SNP [dm6]	G	A	4.300e^-4	0.903	INTERGENIC
2L	14410100	2L_14410100_SNP [dm3] 2L_14410100_SNP [dm6]	C	A	4.301e^-4	0.903	UPSTREAM elB DOWNSTREAM CR44733 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
3R	24272437	3R_24272437_SNP [dm3] 3R_28446715_SNP [dm6]	C	A	4.303e^-4	0.903	INTRON beat-VI
3R	24265097	3R_24265097_SNP [dm3] 3R_28439375_SNP [dm6]	C	T	4.305e^-4	0.903	INTRON beat-VI
3L	13761327	3L_13761327_DEL [dm3] 3L_13768227_DEL [dm6]	GGGACAGGACACTGTGCTCT...	G	4.306e^-4	0.903	INTRON bru-3
3L	4633398	3L_4633398_SNP [dm3] 3L_4633398_SNP [dm6]	G	A	4.311e^-4	0.903	INTRON axo
X	5576325	X_5576325_SNP [dm3] X_5682292_SNP [dm6]	C	T	4.315e^-4	0.903	UPSTREAM CR44958 & 1 other INTRON Gr5a	TF binding site mE1_TFBS_cad
3R	2116859	3R_2116859_SNP [dm3] 3R_6291137_SNP [dm6]	C	T	4.316e^-4	0.903	UPSTREAM Osi13 INTERGENIC
3L	1332448	3L_1332448_SNP [dm3] 3L_1332448_SNP [dm6]	G	C	4.321e^-4	0.903	SYNONYMOUS_CODING msd5 DOWNSTREAM mtacp1 & 2 others
2L	8801415	2L_8801415_DEL [dm3] 2L_8801415_DEL [dm6]	CTAAGTGGTGGAGAACTA...	T	4.325e^-4	0.903	INTERGENIC
2R	15731360	2R_15731360_SNP [dm3] 2R_19843855_SNP [dm6]	G	A	4.326e^-4	0.903	UPSTREAM CG44569 INTERGENIC	TF binding site mE1_TFBS_Kr
3L	2407888	3L_2407888_SNP [dm3] 3L_2407888_SNP [dm6]	A	G	4.329e^-4	0.903	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1024538	2L_1024538_SNP [dm3] 2L_1024538_SNP [dm6]	T	C	4.333e^-4	0.903	INTRON IA-2
2R	18485620	2R_18485620_SNP [dm3] 2R_22598115_SNP [dm6]	T	A	4.334e^-4	0.903	UTR_5_PRIME CG4269 UPSTREAM CR45328	TF binding site mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA
3L	1095870	3L_1095870_SNP [dm3] 3L_1095870_SNP [dm6]	C	T	4.335e^-4	0.903	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	448300	3L_448300_DEL [dm3] 3L_448300_DEL [dm6]	CC	C	4.337e^-4	0.903	UPSTREAM klar INTRON klar	TF binding site mE1_TFBS_cad
2L	1024475	2L_1024475_SNP [dm3] 2L_1024475_SNP [dm6]	T	G	4.350e^-4	0.903	INTRON IA-2
2R	1381332	2R_1381332_SNP [dm3] 2R_5493827_SNP [dm6]	T	C	4.353e^-4	0.903	INTRON CG30440
2R	9090348	2R_9090348_SNP [dm3] 2R_13202843_SNP [dm6]	T	A	4.359e^-4	0.903	UTR_3_PRIME lat & 1 other DOWNSTREAM Aats-val	TF binding site mE1_TFBS_cad
3L	12408100	3L_12408100_SNP [dm3] 3L_12415000_SNP [dm6]	A	G	4.360e^-4	0.903	UPSTREAM CG32103 DOWNSTREAM ArfGAP1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
2L	11937947	2L_11937947_SNP [dm3] 2L_11937947_SNP [dm6]	G	T	4.361e^-4	0.903	UPSTREAM Or33c DOWNSTREAM Or33b INTERGENIC	TF binding site mE1_TFBS_cad
3L	2551680	3L_2551680_SNP [dm3] 3L_2551680_SNP [dm6]	A	T	4.367e^-4	0.903	INTRON Spn
2R	1528352	2R_1528352_SNP [dm3] 2R_5640847_SNP [dm6]	A	G	4.369e^-4	0.903	DOWNSTREAM CG11665 INTERGENIC	TF binding site mE1_TFBS_sens
X	20240447	X_20240447_SNP [dm3] X_20369420_SNP [dm6]	T	G	4.372e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	10459501	2L_10459501_SNP [dm3] 2L_10459501_SNP [dm6]	C	A	4.376e^-4	0.903	NON_SYNONYMOUS_CODING LM408 INTRON LM408
2L	12546712	2L_12546712_SNP [dm3] 2L_12546712_SNP [dm6]	T	A	4.380e^-4	0.903	UPSTREAM bun INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2887932	3L_2887932_SNP [dm3] 3L_2887932_SNP [dm6]	C	T	4.381e^-4	0.903	INTRON spz5
3L	11571673	3L_11571673_SNP [dm3] 3L_11578573_SNP [dm6]	T	C	4.409e^-4	0.903	UTR_5_PRIME CG33270
3L	99453	3L_99453_SNP [dm3] 3L_99453_SNP [dm6]	A	G	4.417e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_zfh1
X	19137300	X_19137300_SNP [dm3] X_19243267_SNP [dm6]	G	T	4.429e^-4	0.903	UPSTREAM CG7889 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	7301326	2R_7301326_SNP [dm3] 2R_11413821_SNP [dm6]	A	G	4.435e^-4	0.903	UPSTREAM CG7763 INTRON Drip
3R	19772856	3R_19772856_SNP [dm3] 3R_23947134_SNP [dm6]	C	G	4.436e^-4	0.903	INTRON CG12268
2L	6472410	2L_6472410_SNP [dm3] 2L_6472410_SNP [dm6]	A	T	4.436e^-4	0.903	UPSTREAM mmy INTRON mmy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20953167	3R_20953167_SNP [dm3] 3R_25127445_SNP [dm6]	G	T	4.438e^-4	0.903	UPSTREAM Clbn & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14708619	3L_14708619_SNP [dm3] 3L_14715519_SNP [dm6]	T	G	4.443e^-4	0.903	INTRON ome
3R	8215093	3R_8215093_SNP [dm3] 3R_12389371_SNP [dm6]	C	A	4.445e^-4	0.903	DOWNSTREAM CG33098 INTRON CG34402
2L	6195679	2L_6195679_SNP [dm3] 2L_6195679_SNP [dm6]	A	T	4.449e^-4	0.903	INTRON CG34380	TF binding site mE1_TFBS_chinmo
3R	24426733	3R_24426733_SNP [dm3] 3R_28601011_SNP [dm6]	C	T	4.454e^-4	0.903	SYNONYMOUS_CODING Hrb98DE UPSTREAM snoRNA:Psi28S-3405a & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_sens
3L	12414425	3L_12414425_SNP [dm3] 3L_12421325_SNP [dm6]	C	G	4.460e^-4	0.903	INTERGENIC
X	8772287	X_8772287_DEL [dm3] X_8878254_DEL [dm6]	TTTTTCTC	T	4.460e^-4	0.903	INTRON Moe
2L	4699810	2L_4699810_SNP [dm3] 2L_4699810_SNP [dm6]	G	A	4.464e^-4	0.903	INTRON CG34351
2L	10936869	2L_10936869_SNP [dm3] 2L_10936869_SNP [dm6]	T	A	4.466e^-4	0.903	UPSTREAM CG14072 INTRON dpr2 & 1 other
3R	1380934	3R_1380934_SNP [dm3] 3R_5555212_SNP [dm6]	C	T	4.467e^-4	0.903	SYNONYMOUS_CODING Snm1 UPSTREAM Pcmt
3R	24285387	3R_24285387_SNP [dm3] 3R_28459665_SNP [dm6]	G	A	4.471e^-4	0.903	INTRON beat-VI
3L	3670746	3L_3670746_SNP [dm3] 3L_3670746_SNP [dm6]	A	T	4.488e^-4	0.903	INTERGENIC
2R	9111874	2R_9111874_SNP [dm3] 2R_13224369_SNP [dm6]	C	T	4.488e^-4	0.903	UPSTREAM Dp INTRON Dp EXON CR43918	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	24276578	3R_24276578_DEL [dm3] 3R_28450856_DEL [dm6]	CACTTAGTGCTGG...	A	4.494e^-4	0.903	INTRON beat-VI	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	989613	2R_989613_SNP [dm3] 2R_5102108_SNP [dm6]	A	C	4.495e^-4	0.903	INTERGENIC	transposable element FlyBase
2R	5338552	2R_5338552_SNP [dm3] 2R_9451047_SNP [dm6]	A	T	4.509e^-4	0.903	INTRON Camta
2L	12093071	2L_12093071_SNP [dm3] 2L_12093071_SNP [dm6]	A	G	4.512e^-4	0.903	UPSTREAM CR44594 & 1 other INTRON Pex19	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	8897449	2R_8897449_DEL [dm3] 2R_13009944_DEL [dm6]	ATTACGCTATCGAATTGCAT...	A	4.514e^-4	0.903	INTERGENIC
3R	14448610	3R_14448610_SNP [dm3] 3R_18622888_SNP [dm6]	A	C	4.515e^-4	0.903	INTRON qin	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	24278346	3R_24278346_SNP [dm3] 3R_28452624_SNP [dm6]	C	T	4.520e^-4	0.903	INTRON beat-VI
X	12939511	X_12939511_SNP [dm3] X_13045478_SNP [dm6]	A	T	4.524e^-4	0.903	INTRON rad
3R	19291839	3R_19291839_SNP [dm3] 3R_23466117_SNP [dm6]	A	G	4.527e^-4	0.903	INTRON CG4374
3L	4732885	3L_4732885_SNP [dm3] 3L_4732885_SNP [dm6]	G	A	4.534e^-4	0.903	UTR_5_PRIME RhoGEF64C
2R	9829174	2R_9829174_SNP [dm3] 2R_13941669_SNP [dm6]	G	A	4.536e^-4	0.903	DOWNSTREAM DJ-1alpha INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12250861	2L_12250861_SNP [dm3] 2L_12250861_SNP [dm6]	G	A	4.539e^-4	0.903	INTRON aret
3L	7203550	3L_7203550_SNP [dm3] 3L_7210450_SNP [dm6]	C	A	4.540e^-4	0.903	INTERGENIC
2L	13945077	2L_13945077_SNP [dm3] 2L_13945077_SNP [dm6]	A	T	4.546e^-4	0.903	UTR_3_PRIME CG16884 INTRON Ance-3	TF binding site mE1_TFBS_cad
2R	18438635	2R_18438635_SNP [dm3] 2R_22551130_SNP [dm6]	A	G	4.549e^-4	0.903	SYNONYMOUS_CODING CG6018 INTRON px	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	18889567	X_18889567_SNP [dm3] X_18995534_SNP [dm6]	T	C	4.552e^-4	0.903	INTRON CG43759
2L	9286522	2L_9286522_SNP [dm3] 2L_9286522_SNP [dm6]	G	A	4.557e^-4	0.903	INTRON Ggamma30A
2L	12164510	2L_12164510_SNP [dm3] 2L_12164510_SNP [dm6]	T	G	4.566e^-4	0.903	NON_SYNONYMOUS_CODING ZnT33D INTRON CG31760
3L	7962977	3L_7962977_SNP [dm3] 3L_7969877_SNP [dm6]	C	A	4.572e^-4	0.903	UPSTREAM RNaseX25 INTERGENIC	TF binding site mE1_TFBS_inv
3R	1310388	3R_1310388_DEL [dm3] 3R_5484666_DEL [dm6]	TTA	C	4.573e^-4	0.903	SPLICE_SITE_REGION Hcs UPSTREAM ksr & 1 other INTRON Hcs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_ttk
3R	24217156	3R_24217156_SNP [dm3] 3R_28391434_SNP [dm6]	C	T	4.573e^-4	0.903	INTERGENIC
3R	21176880	3R_21176880_SNP [dm3] 3R_25351158_SNP [dm6]	C	T	4.577e^-4	0.903	UTR_3_PRIME Fur1 DOWNSTREAM Fur1 INTRON Fur1	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	24316968	3R_24316968_SNP [dm3] 3R_28491246_SNP [dm6]	A	T	4.578e^-4	0.903	UPSTREAM Dhc98D INTRON Dhc98D
X	8818341	X_8818341_SNP [dm3] X_8924308_SNP [dm6]	C	T	4.579e^-4	0.903	SYNONYMOUS_CODING CG43255 UPSTREAM CG12661 & 1 other INTRON rdgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	23844549	3R_23844549_SNP [dm3] 3R_28018827_SNP [dm6]	C	T	4.583e^-4	0.903	INTERGENIC
2L	19398711	2L_19398711_SNP [dm3] 2L_19398711_SNP [dm6]	T	A	4.594e^-4	0.903	UPSTREAM CG17544 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	3406491	3L_3406491_SNP [dm3] 3L_3406491_SNP [dm6]	G	T	4.594e^-4	0.903	INTRON sty
2R	1528744	2R_1528744_SNP [dm3] 2R_5641239_SNP [dm6]	A	G	4.595e^-4	0.903	UTR_3_PRIME CG11665 DOWNSTREAM CG11665
3L	7401727	3L_7401727_SNP [dm3] 3L_7408627_SNP [dm6]	A	T	4.597e^-4	0.903	EXON CR44525
3R	22723082	3R_22723082_SNP [dm3] 3R_26897360_SNP [dm6]	C	T	4.610e^-4	0.903	INTRON T48	regulatory region REDfly_CRMs
2R	19973971	2R_19973971_SNP [dm3] 2R_24086448_SNP [dm6]	G	A	4.611e^-4	0.903	UPSTREAM snama DOWNSTREAM CG16786 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3L	20587062	3L_20587062_SNP [dm3] 3L_20593962_SNP [dm6]	T	C	4.618e^-4	0.903	INTERGENIC
3L	11391456	3L_11391456_SNP [dm3] 3L_11398356_SNP [dm6]	T	C	4.630e^-4	0.903	DOWNSTREAM CG44362 INTERGENIC
X	20224178	X_20224178_SNP [dm3] X_20353151_SNP [dm6]	A	C	4.634e^-4	0.903	INTERGENIC
2R	7401153	2R_7401153_SNP [dm3] 2R_11513648_SNP [dm6]	C	A	4.635e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2R	19049212	2R_19049212_SNP [dm3] 2R_23161689_SNP [dm6]	C	A	4.638e^-4	0.903	SYNONYMOUS_CODING CG9899
2R	17933908	2R_17933908_SNP [dm3] 2R_22046403_SNP [dm6]	T	C	4.642e^-4	0.903	INTERGENIC
2R	7022555	2R_7022555_SNP [dm3] 2R_11135050_SNP [dm6]	C	G	4.643e^-4	0.903	UPSTREAM BBS4 INTERGENIC
2L	5902815	2L_5902815_SNP [dm3] 2L_5902815_SNP [dm6]	C	T	4.647e^-4	0.903	DOWNSTREAM CG9021 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	2422728	X_2422728_SNP [dm3] X_2528695_SNP [dm6]	G	A	4.653e^-4	0.903	INTRON trol	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9829187	2R_9829187_SNP [dm3] 2R_13941682_SNP [dm6]	C	G	4.654e^-4	0.903	DOWNSTREAM DJ-1alpha INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	19303323	2R_19303323_SNP [dm3] 2R_23415800_SNP [dm6]	C	T	4.659e^-4	0.903	UPSTREAM CG30411 INTRON CG9812	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
X	13639417	X_13639417_SNP [dm3] X_13745384_SNP [dm6]	A	G	4.665e^-4	0.903	UPSTREAM Grip91 DOWNSTREAM Pdcd4 EXON CR42861	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
X	16678180	X_16678180_SNP [dm3] X_16784147_SNP [dm6]	G	T	4.671e^-4	0.903	NON_SYNONYMOUS_CODING mRpL22 UPSTREAM if DOWNSTREAM CG9609	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	9105396	2R_9105396_SNP [dm3] 2R_13217891_SNP [dm6]	T	G	4.676e^-4	0.903	SYNONYMOUS_CODING CG4630	TF binding site mE1_TFBS_cad
2L	20034971	2L_20034971_SNP [dm3] 2L_20034971_SNP [dm6]	A	G	4.677e^-4	0.903	INTRON sNPF
2L	13938499	2L_13938499_SNP [dm3] 2L_13938499_SNP [dm6]	T	G	4.686e^-4	0.903	INTRON Ance-3
2R	9746262	2R_9746262_SNP [dm3] 2R_13858757_SNP [dm6]	T	A	4.689e^-4	0.903	UPSTREAM Uba3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	20236536	X_20236536_SNP [dm3] X_20365509_SNP [dm6]	A	G	4.694e^-4	0.903	INTERGENIC
2R	974598	2R_974598_SNP [dm3] 2R_5087093_SNP [dm6]	C	T	4.694e^-4	0.903	INTERGENIC
2L	15089022	2L_15089022_SNP [dm3] 2L_15089022_SNP [dm6]	G	T	4.696e^-4	0.903	INTRON CG15270
2R	19384507	2R_19384507_SNP [dm3] 2R_23496984_SNP [dm6]	C	T	4.699e^-4	0.903	INTERGENIC
2R	6148889	2R_6148889_SNP [dm3] 2R_10261384_SNP [dm6]	T	C	4.703e^-4	0.903	DOWNSTREAM CG12911 EXON CR30009
X	8902722	X_8902722_SNP [dm3] X_9008689_SNP [dm6]	G	A	4.705e^-4	0.903	INTRON rdgA & 1 other
2L	1024532	2L_1024532_SNP [dm3] 2L_1024532_SNP [dm6]	A	G	4.709e^-4	0.903	INTRON IA-2
3R	24281080	3R_24281080_SNP [dm3] 3R_28455358_SNP [dm6]	A	T	4.711e^-4	0.903	INTRON beat-VI
3L	4099234	3L_4099234_SNP [dm3] 3L_4099234_SNP [dm6]	C	G	4.711e^-4	0.903	INTRON CG14995	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3L	2181388	3L_2181388_SNP [dm3] 3L_2181388_SNP [dm6]	C	T	4.717e^-4	0.903	INTERGENIC
2L	438167	2L_438167_SNP [dm3] 2L_438167_SNP [dm6]	T	G	4.718e^-4	0.903	INTRON ex
2L	1890618	2L_1890618_SNP [dm3] 2L_1890618_SNP [dm6]	C	G	4.722e^-4	0.903	INTRON CG7337
X	20235864	X_20235864_SNP [dm3] X_20364837_SNP [dm6]	C	T	4.726e^-4	0.903	INTERGENIC
2L	10865225	2L_10865225_DEL [dm3] 2L_10865225_DEL [dm6]	GTTAGG	G	4.749e^-4	0.903	UPSTREAM CR43807 INTERGENIC
3L	12405671	3L_12405671_SNP [dm3] 3L_12412571_SNP [dm6]	T	C	4.751e^-4	0.903	INTRON CG32103
2R	9509724	2R_9509724_SNP [dm3] 2R_13622219_SNP [dm6]	T	C	4.753e^-4	0.903	UPSTREAM fas INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3L	1334569	3L_1334569_SNP [dm3] 3L_1334569_SNP [dm6]	A	C	4.755e^-4	0.903	UTR_5_PRIME CG2211 UPSTREAM l_3_02640	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14303761	3R_14303761_DEL [dm3] 3R_18478039_DEL [dm6]	TGCAGAT	T	4.757e^-4	0.903	INTRON fru
3R	24107144	3R_24107144_SNP [dm3] 3R_28281422_SNP [dm6]	T	A	4.758e^-4	0.903	INTERGENIC
3R	24107149	3R_24107149_SNP [dm3] 3R_28281427_SNP [dm6]	T	A	4.758e^-4	0.903	INTERGENIC
3R	11030770	3R_11030770_SNP [dm3] 3R_15205048_SNP [dm6]	G	A	4.760e^-4	0.903	INTRON Spn88Ea
X	6416275	X_6416275_SNP [dm3] X_6522242_SNP [dm6]	C	G	4.771e^-4	0.903	INTRON CG42340
3L	2180083	3L_2180083_SNP [dm3] 3L_2180083_SNP [dm6]	A	C	4.785e^-4	0.903	INTERGENIC
3R	21175514	3R_21175514_SNP [dm3] 3R_25349792_SNP [dm6]	A	C	4.797e^-4	0.903	UTR_3_PRIME Fur1 INTRON Fur1
3L	12414380	3L_12414380_SNP [dm3] 3L_12421280_SNP [dm6]	A	G	4.798e^-4	0.903	INTERGENIC
3L	12414525	3L_12414525_INS [dm3] 3L_12421425_INS [dm6]	T	CAATAGATAGATA...	4.807e^-4	0.903	INTERGENIC
X	20402671	X_20402671_SNP [dm3] X_20531644_SNP [dm6]	T	C	4.827e^-4	0.903	INTERGENIC
3L	4712345	3L_4712345_SNP [dm3] 3L_4712345_SNP [dm6]	C	A	4.827e^-4	0.903	INTRON RhoGEF64C
X	17538627	X_17538627_SNP [dm3] X_17644594_SNP [dm6]	A	G	4.828e^-4	0.903	INTRON RhoGAPp190
2R	5338521	2R_5338521_INS [dm3] 2R_9451016_INS [dm6]	T	TCATACCTCTTAT...	4.828e^-4	0.903	INTRON Camta
2R	5338528	2R_5338528_SNP [dm3] 2R_9451023_SNP [dm6]	C	T	4.828e^-4	0.903	INTRON Camta
X	21446174	X_21446174_SNP [dm3] X_21575147_SNP [dm6]	A	T	4.833e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA
3L	4099530	3L_4099530_DEL [dm3] 3L_4099530_DEL [dm6]	ACCC	A	4.836e^-4	0.903	INTRON CG14995	TF binding site mE1_TFBS_inv
3L	3029119	3L_3029119_SNP [dm3] 3L_3029119_SNP [dm6]	A	G	4.837e^-4	0.903	INTERGENIC
3L	4633431	3L_4633431_SNP [dm3] 3L_4633431_SNP [dm6]	C	A	4.842e^-4	0.903	INTRON axo
2L	810366	2L_810366_SNP [dm3] 2L_810366_SNP [dm6]	G	T	4.845e^-4	0.903	UPSTREAM Nnf1b INTERGENIC
2L	7068659	2L_7068659_SNP [dm3] 2L_7068659_SNP [dm6]	G	C	4.848e^-4	0.903	DOWNSTREAM Pvf2 INTRON CG11289	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9135634	2L_9135634_SNP [dm3] 2L_9135634_SNP [dm6]	C	A	4.852e^-4	0.903	INTRON CG32982
2L	4202550	2L_4202550_SNP [dm3] 2L_4202550_SNP [dm6]	G	A	4.852e^-4	0.903	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	11408932	2R_11408932_SNP [dm3] 2R_15521427_SNP [dm6]	T	G	4.856e^-4	0.903	INTRON Khc-73
3L	2479423	3L_2479423_SNP [dm3] 3L_2479423_SNP [dm6]	C	A	4.860e^-4	0.903	UPSTREAM Cyp4d20 INTRON CG45186
3L	1384388	3L_1384388_SNP [dm3] 3L_1384388_SNP [dm6]	T	A	4.860e^-4	0.903	INTRON Ptp61F & 1 other
2L	12727146	2L_12727146_SNP [dm3] 2L_12727146_SNP [dm6]	G	C	4.872e^-4	0.903	INTRON MRP
2L	7068656	2L_7068656_SNP [dm3] 2L_7068656_SNP [dm6]	G	C	4.872e^-4	0.903	DOWNSTREAM Pvf2 INTRON CG11289	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6472409	2L_6472409_SNP [dm3] 2L_6472409_SNP [dm6]	T	A	4.873e^-4	0.903	UPSTREAM mmy INTRON mmy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21318127	3R_21318127_SNP [dm3] 3R_25492405_SNP [dm6]	A	T	4.875e^-4	0.903	NON_SYNONYMOUS_CODING CG5112 EXON CR44179	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12740672	3L_12740672_SNP [dm3] 3L_12747572_SNP [dm6]	T	C	4.875e^-4	0.903	SYNONYMOUS_CODING Klc DOWNSTREAM CG32109
3R	24252511	3R_24252511_SNP [dm3] 3R_28426789_SNP [dm6]	T	C	4.883e^-4	0.903	INTRON beat-VI
2R	18454060	2R_18454060_SNP [dm3] 2R_22566555_SNP [dm6]	G	A	4.886e^-4	0.903	SYNONYMOUS_CODING dnr1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7216994	3L_7216994_SNP [dm3] 3L_7223894_SNP [dm6]	G	A	4.887e^-4	0.903	DOWNSTREAM CR45410 EXON CR45410
X	7677045	X_7677045_SNP [dm3] X_7783012_SNP [dm6]	G	A	4.893e^-4	0.903	INTERGENIC
2L	14908122	2L_14908122_SNP [dm3] 2L_14908122_SNP [dm6]	G	T	4.894e^-4	0.903	UTR_3_PRIME CG42313
2L	18679000	2L_18679000_SNP [dm3] 2L_18679000_SNP [dm6]	A	T	4.895e^-4	0.903	SYNONYMOUS_CODING CG31751 DOWNSTREAM tos
2L	9452598	2L_9452598_SNP [dm3] 2L_9452598_SNP [dm6]	C	A	4.898e^-4	0.903	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	10676736	2L_10676736_SNP [dm3] 2L_10676736_SNP [dm6]	T	A	4.900e^-4	0.903	UPSTREAM CG17104 INTERGENIC
X	20684373	X_20684373_SNP [dm3] X_20813346_SNP [dm6]	C	T	4.909e^-4	0.903	INTRON shakB

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.611e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1809 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	24253132	3R_24253132_SNP [dm3] 3R_28427410_SNP [dm6]	G	A	4.916e^-7	0.811	INTRON beat-VI
2R	2606667	2R_2606667_SNP [dm3] 2R_6719162_SNP [dm6]	C	T	9.512e^-7	0.811	SYNONYMOUS_CODING Zip42C.2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7217041	3L_7217041_SNP [dm3] 3L_7223941_SNP [dm6]	A	C	1.793e^-6	0.811	DOWNSTREAM CR45410 INTERGENIC
2L	9971425	2L_9971425_SNP [dm3] 2L_9971425_SNP [dm6]	A	G	2.040e^-6	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14486329	3R_14486329_SNP [dm3] 3R_18660607_SNP [dm6]	A	C	2.374e^-6	0.811	SYNONYMOUS_CODING CstF-64 DOWNSTREAM Cpsf73	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	24294624	3R_24294624_SNP [dm3] 3R_28468902_SNP [dm6]	C	T	2.593e^-6	0.811	INTRON beat-VI
2L	2721456	2L_2721456_SNP [dm3] 2L_2721456_SNP [dm6]	C	T	5.875e^-6	0.993	INTERGENIC
2L	8310665	2L_8310665_SNP [dm3] 2L_8310665_SNP [dm6]	C	T	6.034e^-6	0.993	SYNONYMOUS_CODING CG7810 UPSTREAM CG7806 DOWNSTREAM CG7818	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3R	24268846	3R_24268846_SNP [dm3] 3R_28443124_SNP [dm6]	T	C	6.752e^-6	0.993	INTRON beat-VI
3L	7217040	3L_7217040_SNP [dm3] 3L_7223940_SNP [dm6]	G	T	8.116e^-6	0.993	DOWNSTREAM CR45410 INTERGENIC
2R	15387465	2R_15387465_SNP [dm3] 2R_19499960_SNP [dm6]	C	T	8.433e^-6	0.993	SYNONYMOUS_CODING CG15120 DOWNSTREAM CG16926
2L	10457748	2L_10457748_SNP [dm3] 2L_10457748_SNP [dm6]	G	A	1.101e^-5	0.993	START_GAINED LM408 UTR_5_PRIME LM408 UPSTREAM CG5322	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	9666727	X_9666727_SNP [dm3] X_9772694_SNP [dm6]	T	C	1.119e^-5	0.993	INTERGENIC
2L	1024601	2L_1024601_SNP [dm3] 2L_1024601_SNP [dm6]	G	C	1.141e^-5	0.993	INTRON IA-2
2R	2606874	2R_2606874_SNP [dm3] 2R_6719369_SNP [dm6]	A	G	1.146e^-5	0.993	SYNONYMOUS_CODING Zip42C.2	TF binding site mE1_TFBS_cad
2L	12231269	2L_12231269_INS [dm3] 2L_12231269_INS [dm6]	T	TGT	1.202e^-5	0.993	INTRON aret
2L	11422612	2L_11422612_SNP [dm3] 2L_11422612_SNP [dm6]	T	G	1.227e^-5	0.993	INTERGENIC
2R	15401307	2R_15401307_SNP [dm3] 2R_19513802_SNP [dm6]	G	T	1.295e^-5	0.993	UPSTREAM Ir56d INTERGENIC
3L	3029119	3L_3029119_SNP [dm3] 3L_3029119_SNP [dm6]	A	G	1.313e^-5	0.993	INTERGENIC
2R	15401298	2R_15401298_SNP [dm3] 2R_19513793_SNP [dm6]	A	C	1.322e^-5	0.993	UPSTREAM Ir56d INTERGENIC
3L	3029123	3L_3029123_SNP [dm3] 3L_3029123_SNP [dm6]	T	C	1.327e^-5	0.993	INTERGENIC
2L	1025674	2L_1025674_SNP [dm3] 2L_1025674_SNP [dm6]	C	G	1.370e^-5	0.993	DOWNSTREAM CG4375 INTRON IA-2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6794167	3L_6794167_SNP [dm3] 3L_6801067_SNP [dm6]	C	T	1.450e^-5	0.993	INTERGENIC
2L	6804599	2L_6804599_SNP [dm3] 2L_6804599_SNP [dm6]	A	G	1.524e^-5	0.993	UTR_3_PRIME CG17375 DOWNSTREAM CG17375 & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	18430856	3R_18430856_SNP [dm3] 3R_22605134_SNP [dm6]	A	C	1.546e^-5	0.993	INTRON Efa6
2L	13821617	2L_13821617_SNP [dm3] 2L_13821617_SNP [dm6]	C	A	1.559e^-5	0.993	SYNONYMOUS_CODING b	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20376518	3R_20376518_SNP [dm3] 3R_24550796_SNP [dm6]	G	C	1.628e^-5	0.993	INTRON Esyt2
3R	20376516	3R_20376516_SNP [dm3] 3R_24550794_SNP [dm6]	T	C	1.633e^-5	0.993	INTRON Esyt2
2L	11185694	2L_11185694_SNP [dm3] 2L_11185694_SNP [dm6]	C	T	1.664e^-5	0.993	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	1591261	3L_1591261_SNP [dm3] 3L_1591261_SNP [dm6]	G	T	1.742e^-5	0.993	INTRON CG13917
X	22063980	X_22063980_SNP [dm3] X_22662144_SNP [dm6]	G	A	1.905e^-5	0.993	INTRON CR44997
2L	1024594	2L_1024594_SNP [dm3] 2L_1024594_SNP [dm6]	T	C	1.957e^-5	0.993	INTRON IA-2
2L	10561460	2L_10561460_SNP [dm3] 2L_10561460_SNP [dm6]	T	C	2.063e^-5	0.993	INTRON Trim9
3R	20209017	3R_20209017_SNP [dm3] 3R_24383295_SNP [dm6]	A	T	2.159e^-5	0.993	UTR_3_PRIME CG17780
2L	7975282	2L_7975282_SNP [dm3] 2L_7975282_SNP [dm6]	C	G	2.234e^-5	0.993	SYNONYMOUS_CODING Snoo
2L	7975101	2L_7975101_SNP [dm3] 2L_7975101_SNP [dm6]	A	G	2.292e^-5	0.993	INTRON Snoo
2L	12942609	2L_12942609_SNP [dm3] 2L_12942609_SNP [dm6]	T	A	2.374e^-5	0.993	INTERGENIC
3L	13906607	3L_13906607_SNP [dm3] 3L_13913507_SNP [dm6]	T	C	2.411e^-5	0.993	INTRON Rgl
3L	5067745	3L_5067745_SNP [dm3] 3L_5067745_SNP [dm6]	T	A	2.431e^-5	0.993	INTRON Con
X	22064154	X_22064154_SNP [dm3] X_22662318_SNP [dm6]	C	T	2.606e^-5	0.993	INTRON CR44997
3L	11656382	3L_11656382_SNP [dm3] 3L_11663282_SNP [dm6]	A	C	2.719e^-5	0.993	INTRON CG32085
X	22063864	X_22063864_DEL [dm3] X_22662028_DEL [dm6]	TCAGCACCGAAACTCTGTTC...	T	2.900e^-5	0.993	INTRON CR44997
X	3456949	X_3456949_SNP [dm3] X_3562916_SNP [dm6]	T	C	2.936e^-5	0.993	INTRON CG32791 & 1 other
3R	16291477	3R_16291477_SNP [dm3] 3R_20465755_SNP [dm6]	T	G	3.128e^-5	0.993	INTRON Gfrl
3L	2480231	3L_2480231_SNP [dm3] 3L_2480231_SNP [dm6]	A	G	3.148e^-5	0.993	INTRON CG45186	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1778303	2R_1778303_SNP [dm3] 2R_5890798_SNP [dm6]	A	T	3.158e^-5	0.993	INTERGENIC
2L	1024736	2L_1024736_SNP [dm3] 2L_1024736_SNP [dm6]	A	T	3.167e^-5	0.993	INTRON IA-2
2L	11583856	2L_11583856_SNP [dm3] 2L_11583856_SNP [dm6]	T	C	3.185e^-5	0.993	INTRON kek2
X	8818341	X_8818341_SNP [dm3] X_8924308_SNP [dm6]	C	T	3.290e^-5	0.993	SYNONYMOUS_CODING CG43255 UPSTREAM CG12661 & 1 other INTRON rdgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	1024608	2L_1024608_SNP [dm3] 2L_1024608_SNP [dm6]	C	T	3.421e^-5	0.993	INTRON IA-2
2L	10380385	2L_10380385_SNP [dm3] 2L_10380385_SNP [dm6]	T	C	3.436e^-5	0.993	SYNONYMOUS_CODING gny DOWNSTREAM dpr19	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	18430838	3R_18430838_SNP [dm3] 3R_22605116_SNP [dm6]	C	A	3.504e^-5	0.993	INTRON Efa6
3L	7998576	3L_7998576_SNP [dm3] 3L_8005476_SNP [dm6]	G	T	3.537e^-5	0.993	INTRON nmo	TF binding site BDTNP1_TFBS_dl
2L	9307436	2L_9307436_SNP [dm3] 2L_9307436_SNP [dm6]	C	A	3.574e^-5	0.993	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18611868	3R_18611868_SNP [dm3] 3R_22786146_SNP [dm6]	T	G	3.634e^-5	0.993	INTRON CG7029	TF binding site mE1_TFBS_HSA
3L	2186719	3L_2186719_SNP [dm3] 3L_2186719_SNP [dm6]	C	T	3.642e^-5	0.993	SYNONYMOUS_CODING CG13810	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5067756	3L_5067756_SNP [dm3] 3L_5067756_SNP [dm6]	G	T	3.648e^-5	0.993	INTRON Con
3R	24252511	3R_24252511_SNP [dm3] 3R_28426789_SNP [dm6]	T	C	3.667e^-5	0.993	INTRON beat-VI
2L	9833391	2L_9833391_SNP [dm3] 2L_9833391_SNP [dm6]	T	C	3.671e^-5	0.993	INTRON nAChRalpha6
X	9666497	X_9666497_SNP [dm3] X_9772464_SNP [dm6]	A	G	3.737e^-5	0.993	INTERGENIC
2L	14080562	2L_14080562_SNP [dm3] 2L_14080562_SNP [dm6]	A	G	3.744e^-5	0.993	SYNONYMOUS_CODING nAChRalpha5
X	16772196	X_16772196_SNP [dm3] X_16878163_SNP [dm6]	G	A	3.754e^-5	0.993	INTERGENIC
2R	9739780	2R_9739780_SNP [dm3] 2R_13852275_SNP [dm6]	A	G	3.755e^-5	0.993	SYNONYMOUS_CODING CG30485 DOWNSTREAM CG6543
3L	5067754	3L_5067754_SNP [dm3] 3L_5067754_SNP [dm6]	T	G	3.807e^-5	0.993	INTRON Con
2L	934761	2L_934761_SNP [dm3] 2L_934761_SNP [dm6]	T	G	3.817e^-5	0.993	INTRON CG4341	TF binding site mE1_TFBS_chinmo
2R	15401328	2R_15401328_SNP [dm3] 2R_19513823_SNP [dm6]	C	A	3.992e^-5	0.993	UPSTREAM Ir56d INTERGENIC
3L	10347575	3L_10347575_SNP [dm3] 3L_10354475_SNP [dm6]	C	A	4.033e^-5	0.993	INTRON CR44327	TF binding site BDTNP1_TFBS_twi
3R	12547594	3R_12547594_SNP [dm3] 3R_16721872_SNP [dm6]	C	G	4.094e^-5	0.993	INTRON Ubx	TF binding site BDTNP1_TFBS_da
3R	18430837	3R_18430837_SNP [dm3] 3R_22605115_SNP [dm6]	T	C	4.146e^-5	0.993	INTRON Efa6
3L	7217047	3L_7217047_SNP [dm3] 3L_7223947_SNP [dm6]	G	T	4.221e^-5	0.993	DOWNSTREAM CR45410 INTERGENIC
3R	23747836	3R_23747836_SNP [dm3] 3R_27922114_SNP [dm6]	C	T	4.278e^-5	0.993	SYNONYMOUS_CODING BCAS2 UPSTREAM RpL4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	21511209	3R_21511209_SNP [dm3] 3R_25685487_SNP [dm6]	C	T	4.287e^-5	0.993	SYNONYMOUS_CODING CLS UPSTREAM RpL27	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	11961309	2L_11961309_SNP [dm3] 2L_11961309_SNP [dm6]	T	G	4.311e^-5	0.993	INTRON CR43314 EXON CR43314
2L	1024487	2L_1024487_SNP [dm3] 2L_1024487_SNP [dm6]	A	G	4.345e^-5	0.993	INTRON IA-2	insulator Insulator_Class_II.mE01
2R	7836694	2R_7836694_SNP [dm3] 2R_11949189_SNP [dm6]	G	C	4.447e^-5	0.993	INTRON CG13188
2L	9168266	2L_9168266_SNP [dm3] 2L_9168266_SNP [dm6]	A	G	4.519e^-5	0.993	INTRON tai	TF binding site BDTNP1_TFBS_dl
2L	960794	2L_960794_SNP [dm3] 2L_960794_SNP [dm6]	A	G	4.576e^-5	0.993	INTERGENIC
3L	5067683	3L_5067683_SNP [dm3] 3L_5067683_SNP [dm6]	G	A	4.641e^-5	0.993	INTRON Con
2L	7452411	2L_7452411_SNP [dm3] 2L_7452411_SNP [dm6]	T	A	4.645e^-5	0.993	DOWNSTREAM Gr28a INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
2R	10817256	2R_10817256_SNP [dm3] 2R_14929751_SNP [dm6]	C	A	4.750e^-5	0.993	UTR_3_PRIME CG10253 DOWNSTREAM CG10253
X	9666667	X_9666667_SNP [dm3] X_9772634_SNP [dm6]	A	C	4.969e^-5	0.993	INTERGENIC
3R	14194794	3R_14194794_SNP [dm3] 3R_18369072_SNP [dm6]	T	C	4.976e^-5	0.993	UTR_3_PRIME gl INTRON gl
3L	7217043	3L_7217043_SNP [dm3] 3L_7223943_SNP [dm6]	C	A	5.043e^-5	0.993	DOWNSTREAM CR45410 INTERGENIC
3L	10347731	3L_10347731_SNP [dm3] 3L_10354631_SNP [dm6]	A	T	5.068e^-5	0.993	INTRON CR44327	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2480238	3L_2480238_SNP [dm3] 3L_2480238_SNP [dm6]	A	C	5.072e^-5	0.993	INTRON CG45186	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11185661	2L_11185661_SNP [dm3] 2L_11185661_SNP [dm6]	G	A	5.108e^-5	0.993	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	1035436	2L_1035436_SNP [dm3] 2L_1035436_SNP [dm6]	C	T	5.146e^-5	0.993	UPSTREAM IA-2 INTRON IA-2
3R	7963558	3R_7963558_SNP [dm3] 3R_12137836_SNP [dm6]	T	G	5.170e^-5	0.993	DOWNSTREAM dpr15 INTERGENIC
3R	19924656	3R_19924656_SNP [dm3] 3R_24098934_SNP [dm6]	T	C	5.213e^-5	0.993	INTRON 4EHP
3L	3406512	3L_3406512_SNP [dm3] 3L_3406512_SNP [dm6]	T	C	5.219e^-5	0.993	INTRON sty
2L	6576609	2L_6576609_SNP [dm3] 2L_6576609_SNP [dm6]	G	C	5.228e^-5	0.993	INTRON CG11319
2L	1024665	2L_1024665_SNP [dm3] 2L_1024665_SNP [dm6]	C	G	5.272e^-5	0.993	INTRON IA-2
3L	5067767	3L_5067767_SNP [dm3] 3L_5067767_SNP [dm6]	T	C	5.341e^-5	0.993	INTRON Con
2L	12284314	2L_12284314_SNP [dm3] 2L_12284314_SNP [dm6]	C	T	5.428e^-5	0.993	INTRON aret
3R	21509607	3R_21509607_SNP [dm3] 3R_25683885_SNP [dm6]	G	A	5.431e^-5	0.993	UTR_3_PRIME RpL27 DOWNSTREAM RpL27 & 1 other
2L	3664670	2L_3664670_SNP [dm3] 2L_3664670_SNP [dm6]	T	A	5.575e^-5	0.993	INTRON CG34340
2R	11299613	2R_11299613_SNP [dm3] 2R_15412108_SNP [dm6]	C	T	5.641e^-5	0.993	INTRON CG43729
3L	1439384	3L_1439384_DEL [dm3] 3L_1439384_DEL [dm6]	CT	A	5.685e^-5	0.993	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da
X	9666505	X_9666505_SNP [dm3] X_9772472_SNP [dm6]	A	T	5.849e^-5	0.993	INTERGENIC
3L	12377159	3L_12377159_SNP [dm3] 3L_12384059_SNP [dm6]	A	C	5.858e^-5	0.993	INTRON Ncc69
2L	11748547	2L_11748547_SNP [dm3] 2L_11748547_SNP [dm6]	T	G	6.046e^-5	0.993	INTERGENIC
3L	15904103	3L_15904103_SNP [dm3] 3L_15911003_SNP [dm6]	A	G	6.179e^-5	0.993	INTRON sff
X	22064878	X_22064878_SNP [dm3] X_22663042_SNP [dm6]	A	G	6.216e^-5	0.993	INTRON CR44997
2L	9811187	2L_9811187_SNP [dm3] 2L_9811187_SNP [dm6]	G	T	6.423e^-5	0.993	INTRON nAChRalpha6
2L	1025391	2L_1025391_SNP [dm3] 2L_1025391_SNP [dm6]	G	C	6.587e^-5	0.993	DOWNSTREAM CG4375 INTRON IA-2	TF binding site mE1_TFBS_chinmo
3L	1593996	3L_1593996_SNP [dm3] 3L_1593996_SNP [dm6]	T	C	6.838e^-5	0.993	SYNONYMOUS_CODING CG13917	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens mE1_TFBS_Trl
X	9666904	X_9666904_SNP [dm3] X_9772871_SNP [dm6]	T	G	6.892e^-5	0.993	INTERGENIC
3L	2181328	3L_2181328_SNP [dm3] 3L_2181328_SNP [dm6]	G	T	6.925e^-5	0.993	INTERGENIC
2L	7716340	2L_7716340_SNP [dm3] 2L_7716340_SNP [dm6]	G	A	6.993e^-5	0.993	DOWNSTREAM CG13793 INTRON CG33296
2L	13939077	2L_13939077_SNP [dm3] 2L_13939077_SNP [dm6]	T	G	7.003e^-5	0.993	INTRON Ance-3
X	11527082	X_11527082_SNP [dm3] X_11633049_SNP [dm6]	T	C	7.051e^-5	0.993	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10011711	2L_10011711_SNP [dm3] 2L_10011711_SNP [dm6]	C	A	7.219e^-5	0.993	SYNONYMOUS_CODING Trp1
X	9666557	X_9666557_SNP [dm3] X_9772524_SNP [dm6]	G	C	7.262e^-5	0.993	INTERGENIC
3L	7739748	3L_7739748_SNP [dm3] 3L_7746648_SNP [dm6]	T	C	7.304e^-5	0.993	UPSTREAM CG13685 INTRON CG32373
X	18374009	X_18374009_INS [dm3] X_18479976_INS [dm6]	A	AAATTTCCCA	7.372e^-5	0.993	UPSTREAM CR45714 & 1 other DOWNSTREAM Hayan INTERGENIC	TF binding site mE1_TFBS_HSA
2L	12234618	2L_12234618_SNP [dm3] 2L_12234618_SNP [dm6]	T	C	7.447e^-5	0.993	INTRON aret
2R	11299604	2R_11299604_SNP [dm3] 2R_15412099_SNP [dm6]	G	A	7.478e^-5	0.993	INTRON CG43729
3L	18890877	3L_18890877_SNP [dm3] 3L_18897777_SNP [dm6]	T	C	7.513e^-5	0.993	INTRON CG3902
2R	9742901	2R_9742901_SNP [dm3] 2R_13855396_SNP [dm6]	T	C	7.572e^-5	0.993	SYNONYMOUS_CODING CG6553 DOWNSTREAM tum EXON CR44367
3L	10347606	3L_10347606_SNP [dm3] 3L_10354506_SNP [dm6]	C	G	7.581e^-5	0.993	INTRON CR44327	TF binding site BDTNP1_TFBS_twi
3R	14485879	3R_14485879_SNP [dm3] 3R_18660157_SNP [dm6]	G	T	7.618e^-5	0.993	SYNONYMOUS_CODING CstF-64 UPSTREAM CG31224 DOWNSTREAM Cpsf73	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	3041992	X_3041992_SNP [dm3] X_3147959_SNP [dm6]	C	A	7.704e^-5	0.993	INTRON N	TF binding site BDTNP1_TFBS_dl
2L	8026682	2L_8026682_SNP [dm3] 2L_8026682_SNP [dm6]	G	A	7.730e^-5	0.993	SYNONYMOUS_CODING Tg DOWNSTREAM CG7367
3L	3406503	3L_3406503_SNP [dm3] 3L_3406503_SNP [dm6]	A	T	7.735e^-5	0.993	INTRON sty
3L	2480008	3L_2480008_SNP [dm3] 3L_2480008_SNP [dm6]	A	G	7.746e^-5	0.993	INTRON CG45186	TF binding site BDTNP1_TFBS_twi
X	22064224	X_22064224_SNP [dm3] X_22662388_SNP [dm6]	G	T	7.985e^-5	0.993	INTRON CR44997
3R	18430820	3R_18430820_SNP [dm3] 3R_22605098_SNP [dm6]	G	A	8.060e^-5	0.993	SPLICE_SITE_REGION Efa6 INTRON Efa6
3L	1334971	3L_1334971_SNP [dm3] 3L_1334971_SNP [dm6]	T	A	8.122e^-5	0.993	SPLICE_SITE_REGION CG2211 UTR_5_PRIME CG2211 & 1 other UPSTREAM CG2211	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1334340	3L_1334340_SNP [dm3] 3L_1334340_SNP [dm6]	A	T	8.224e^-5	0.993	SYNONYMOUS_CODING CG2211 UPSTREAM l_3_02640	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	7217056	3L_7217056_SNP [dm3] 3L_7223956_SNP [dm6]	G	A	8.238e^-5	0.993	DOWNSTREAM CR45410 INTERGENIC
2L	14410100	2L_14410100_SNP [dm3] 2L_14410100_SNP [dm6]	C	A	8.488e^-5	0.993	UPSTREAM elB DOWNSTREAM CR44733 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
2L	9871932	2L_9871932_SNP [dm3] 2L_9871932_SNP [dm6]	G	T	8.527e^-5	0.993	INTRON nAChRalpha6
3L	5950979	3L_5950979_SNP [dm3] 3L_5957879_SNP [dm6]	A	C	8.552e^-5	0.993	INTERGENIC
X	9666527	X_9666527_SNP [dm3] X_9772494_SNP [dm6]	A	T	8.603e^-5	0.993	INTERGENIC
3L	1610365	3L_1610365_SNP [dm3] 3L_1610365_SNP [dm6]	G	C	8.630e^-5	0.993	DOWNSTREAM CG12105 INTRON CG33791 & 1 other
3L	5203483	3L_5203483_SNP [dm3] 3L_5210383_SNP [dm6]	T	G	8.691e^-5	0.993	INTRON shep
3R	14194726	3R_14194726_SNP [dm3] 3R_18369004_SNP [dm6]	G	A	8.692e^-5	0.993	UTR_3_PRIME gl INTRON gl
3L	12812433	3L_12812433_SNP [dm3] 3L_12819333_SNP [dm6]	A	G	8.771e^-5	0.993	NON_SYNONYMOUS_CODING CG42588	TF binding site mE1_TFBS_sens
2R	5981894	2R_5981894_SNP [dm3] 2R_10094389_SNP [dm6]	A	C	8.892e^-5	0.993	SYNONYMOUS_CODING CG2269	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14194763	3R_14194763_SNP [dm3] 3R_18369041_SNP [dm6]	T	A	9.034e^-5	0.993	UTR_3_PRIME gl INTRON gl
3R	9896415	3R_9896415_INS [dm3] 3R_14070693_INS [dm6]	A	AATTCA	9.080e^-5	0.993	INTRON foxo
X	3041991	X_3041991_SNP [dm3] X_3147958_SNP [dm6]	A	C	9.146e^-5	0.993	INTRON N	TF binding site BDTNP1_TFBS_dl
2L	13124585	2L_13124585_SNP [dm3] 2L_13124585_SNP [dm6]	C	T	9.189e^-5	0.993	INTERGENIC
2R	13151323	2R_13151323_SNP [dm3] 2R_17263818_SNP [dm6]	C	G	9.200e^-5	0.993	INTRON mbl	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2L	11209551	2L_11209551_SNP [dm3] 2L_11209551_SNP [dm6]	A	T	9.263e^-5	0.993	INTERGENIC
3R	16689852	3R_16689852_SNP [dm3] 3R_20864130_SNP [dm6]	A	T	9.298e^-5	0.993	INTRON CG3822	TF binding site mE1_TFBS_chinmo
2R	7062975	2R_7062975_SNP [dm3] 2R_11175470_SNP [dm6]	T	C	9.300e^-5	0.993	INTRON shn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	5281993	3L_5281993_INS [dm3] 3L_5288893_INS [dm6]	T	TT	9.348e^-5	0.993	INTERGENIC
X	9666830	X_9666830_SNP [dm3] X_9772797_SNP [dm6]	G	A	9.406e^-5	0.993	INTERGENIC
3L	2603070	3L_2603070_SNP [dm3] 3L_2603070_SNP [dm6]	G	A	9.641e^-5	0.993	SYNONYMOUS_CODING Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2480236	3L_2480236_SNP [dm3] 3L_2480236_SNP [dm6]	G	A	9.650e^-5	0.993	INTRON CG45186	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19010021	2R_19010021_SNP [dm3] 2R_23122498_SNP [dm6]	G	A	9.692e^-5	0.993	INTERGENIC
3L	22453868	3L_22453868_SNP [dm3] 3L_22460768_SNP [dm6]	T	G	9.718e^-5	0.993	UTR_5_PRIME laza	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	22063957	X_22063957_SNP [dm3] X_22662121_SNP [dm6]	G	A	9.766e^-5	0.993	INTRON CR44997
2R	11459146	2R_11459146_SNP [dm3] 2R_15571641_SNP [dm6]	A	C	9.770e^-5	0.993	UPSTREAM Cdk5 INTRON CG30466	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
X	8796962	X_8796962_SNP [dm3] X_8902929_SNP [dm6]	A	T	9.897e^-5	0.993	INTRON Rbm13
3L	13037829	3L_13037829_SNP [dm3] 3L_13044729_SNP [dm6]	C	T	9.933e^-5	0.993	UTR_5_PRIME Syx13 DOWNSTREAM RpS4 INTRON Syx13	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9871921	2L_9871921_SNP [dm3] 2L_9871921_SNP [dm6]	C	A	1.007e^-4	0.993	INTRON nAChRalpha6
3L	2603097	3L_2603097_SNP [dm3] 3L_2603097_SNP [dm6]	C	T	1.016e^-4	0.993	SYNONYMOUS_CODING Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	15170953	X_15170953_SNP [dm3] X_15276920_SNP [dm6]	C	G	1.019e^-4	0.993	INTERGENIC
3R	11030691	3R_11030691_DEL [dm3] 3R_15204969_DEL [dm6]	AGAATTGTTGTAAACAATCA...	T	1.024e^-4	0.993	INTRON Spn88Ea
2L	13145686	2L_13145686_SNP [dm3] 2L_13145686_SNP [dm6]	T	C	1.026e^-4	0.993	UPSTREAM CR44199 INTERGENIC	TF binding site mE1_TFBS_inv
2R	11391523	2R_11391523_SNP [dm3] 2R_15504018_SNP [dm6]	G	T	1.029e^-4	0.993	UPSTREAM Ir52c DOWNSTREAM Ir52b INTERGENIC
3R	14486461	3R_14486461_SNP [dm3] 3R_18660739_SNP [dm6]	C	T	1.030e^-4	0.993	SYNONYMOUS_CODING CstF-64 DOWNSTREAM Cpsf73	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	1024627	2L_1024627_SNP [dm3] 2L_1024627_SNP [dm6]	T	A	1.045e^-4	0.993	INTRON IA-2
3L	7963028	3L_7963028_SNP [dm3] 3L_7969928_SNP [dm6]	A	T	1.046e^-4	0.993	UPSTREAM RNaseX25 INTERGENIC	TF binding site mE1_TFBS_inv
X	22063917	X_22063917_SNP [dm3] X_22662081_SNP [dm6]	C	T	1.048e^-4	0.993	INTRON CR44997
X	8796944	X_8796944_SNP [dm3] X_8902911_SNP [dm6]	T	A	1.049e^-4	0.993	INTRON Rbm13
2L	20418313	2L_20418313_INS [dm3] 2L_20418313_INS [dm6]	G	GCCTTAATT	1.051e^-4	0.993	UPSTREAM snoRNA:Psi18S-525a & 6 others INTRON Arpc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl mE1_TFBS_zfh1
2R	17016691	2R_17016691_SNP [dm3] 2R_21129186_SNP [dm6]	G	A	1.053e^-4	0.993	SYNONYMOUS_CODING mago UPSTREAM CG4050 DOWNSTREAM Magi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	15093370	2R_15093370_DEL [dm3] 2R_19205865_DEL [dm6]	GTTCGAAGGACTTGCATG...	C	1.053e^-4	0.993	INTRON hppy
2L	9307435	2L_9307435_SNP [dm3] 2L_9307435_SNP [dm6]	C	A	1.061e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	9666820	X_9666820_SNP [dm3] X_9772787_SNP [dm6]	T	G	1.063e^-4	0.993	INTERGENIC
3L	1645835	3L_1645835_SNP [dm3] 3L_1645835_SNP [dm6]	G	A	1.066e^-4	0.993	SYNONYMOUS_CODING CG13919 UPSTREAM alphaCOP DOWNSTREAM CG17249	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11459227	2R_11459227_SNP [dm3] 2R_15571722_SNP [dm6]	G	A	1.067e^-4	0.993	NON_SYNONYMOUS_CODING CG30466 UPSTREAM Cdk5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk
2L	9553683	2L_9553683_SNP [dm3] 2L_9553683_SNP [dm6]	T	C	1.081e^-4	0.993	SYNONYMOUS_CODING jp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8001638	3L_8001638_SNP [dm3] 3L_8008538_SNP [dm6]	A	T	1.087e^-4	0.993	INTRON nmo
2L	16567044	2L_16567044_SNP [dm3] 2L_16567044_SNP [dm6]	G	A	1.088e^-4	0.993	INTRON CG42389
3L	7511718	3L_7511718_SNP [dm3] 3L_7518618_SNP [dm6]	A	G	1.091e^-4	0.993	UPSTREAM ltl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	12942792	2L_12942792_SNP [dm3] 2L_12942792_SNP [dm6]	A	T	1.092e^-4	0.993	INTERGENIC
2L	9326688	2L_9326688_SNP [dm3] 2L_9326688_SNP [dm6]	A	G	1.092e^-4	0.993	UPSTREAM CR45457 EXON CR45456	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	16373113	X_16373113_SNP [dm3] X_16479080_SNP [dm6]	C	T	1.109e^-4	0.993	INTRON para
2R	4591107	2R_4591107_SNP [dm3] 2R_8703602_SNP [dm6]	C	T	1.110e^-4	0.993	SPLICE_SITE_REGION CG12376 INTRON CG12376
3R	14646162	3R_14646162_SNP [dm3] 3R_18820440_SNP [dm6]	A	T	1.110e^-4	0.993	INTRON CG18208
2R	10814590	2R_10814590_SNP [dm3] 2R_14927085_SNP [dm6]	G	T	1.112e^-4	0.993	INTRON CG10249	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9890663	3R_9890663_SNP [dm3] 3R_14064941_SNP [dm6]	T	G	1.112e^-4	0.993	INTRON foxo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	18430891	3R_18430891_SNP [dm3] 3R_22605169_SNP [dm6]	C	T	1.126e^-4	0.993	SYNONYMOUS_CODING Efa6
3L	1593999	3L_1593999_SNP [dm3] 3L_1593999_SNP [dm6]	C	T	1.126e^-4	0.993	SYNONYMOUS_CODING CG13917	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens mE1_TFBS_Trl
3L	5067297	3L_5067297_SNP [dm3] 3L_5067297_SNP [dm6]	C	T	1.130e^-4	0.993	INTRON Con
2L	11930045	2L_11930045_SNP [dm3] 2L_11930045_SNP [dm6]	C	T	1.136e^-4	0.993	INTERGENIC
3L	3406491	3L_3406491_SNP [dm3] 3L_3406491_SNP [dm6]	G	T	1.137e^-4	0.993	INTRON sty
2L	2315178	2L_2315178_SNP [dm3] 2L_2315178_SNP [dm6]	A	G	1.156e^-4	0.993	INTRON CG9967 & 1 other
3R	9961266	3R_9961266_SNP [dm3] 3R_14135544_SNP [dm6]	T	C	1.172e^-4	0.993	INTERGENIC
3R	12940048	3R_12940048_SNP [dm3] 3R_17114326_SNP [dm6]	T	A	1.176e^-4	0.993	INTRON cher
3L	22249129	3L_22249129_SNP [dm3] 3L_22256029_SNP [dm6]	G	T	1.176e^-4	0.993	INTERGENIC
2R	9124635	2R_9124635_SNP [dm3] 2R_13237130_SNP [dm6]	C	T	1.177e^-4	0.993	DOWNSTREAM CG4679 & 1 other INTERGENIC
3L	4732885	3L_4732885_SNP [dm3] 3L_4732885_SNP [dm6]	G	A	1.179e^-4	0.993	UTR_5_PRIME RhoGEF64C
3R	21518589	3R_21518589_SNP [dm3] 3R_25692867_SNP [dm6]	T	A	1.183e^-4	0.993	INTERGENIC
3R	21518591	3R_21518591_SNP [dm3] 3R_25692869_SNP [dm6]	G	A	1.183e^-4	0.993	INTERGENIC
3R	21518593	3R_21518593_MNP [dm3] 3R_25692871_MNP [dm6]	CCA	ATT	1.183e^-4	0.993	INTERGENIC
3R	21518607	3R_21518607_DEL [dm3] 3R_25692885_DEL [dm6]	AT	A	1.183e^-4	0.993	INTERGENIC
3R	21518614	3R_21518614_MNP [dm3] 3R_25692892_MNP [dm6]	TAAGT	ACTAC	1.183e^-4	0.993	INTERGENIC
3L	12812517	3L_12812517_SNP [dm3] 3L_12819417_SNP [dm6]	C	G	1.184e^-4	0.993	NON_SYNONYMOUS_CODING CG42588
X	8922365	X_8922365_INS [dm3] X_9028332_INS [dm6]	A	ACA	1.186e^-4	0.993	UTR_3_PRIME rdgA DOWNSTREAM rdgA INTRON CR43836
2L	8771221	2L_8771221_SNP [dm3] 2L_8771221_SNP [dm6]	A	T	1.190e^-4	0.993	SYNONYMOUS_CODING CG9465
2L	12727146	2L_12727146_SNP [dm3] 2L_12727146_SNP [dm6]	G	C	1.195e^-4	0.993	INTRON MRP
2L	2315201	2L_2315201_SNP [dm3] 2L_2315201_SNP [dm6]	G	C	1.203e^-4	0.993	INTRON CG9967 & 1 other
2L	8312006	2L_8312006_SNP [dm3] 2L_8312006_SNP [dm6]	C	A	1.204e^-4	0.993	UPSTREAM CG7810 INTRON CG7806	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	11524193	2R_11524193_SNP [dm3] 2R_15636688_SNP [dm6]	A	C	1.205e^-4	0.993	INTRON CG42524
3R	2048107	3R_2048107_SNP [dm3] 3R_6222385_SNP [dm6]	C	A	1.213e^-4	0.993	UPSTREAM Osi4 INTERGENIC	TF binding site mE1_TFBS_cad
3R	20703442	3R_20703442_SNP [dm3] 3R_24877720_SNP [dm6]	C	A	1.215e^-4	0.993	NON_SYNONYMOUS_CODING CG31381 INTRON CG11089	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	11421313	3R_11421313_SNP [dm3] 3R_15595591_SNP [dm6]	A	T	1.217e^-4	0.993	INTERGENIC
3L	9781587	3L_9781587_SNP [dm3] 3L_9788487_SNP [dm6]	A	G	1.221e^-4	0.993	UTR_3_PRIME Zasp67
2L	13124593	2L_13124593_SNP [dm3] 2L_13124593_SNP [dm6]	G	T	1.222e^-4	0.993	INTERGENIC
3R	18430912	3R_18430912_SNP [dm3] 3R_22605190_SNP [dm6]	G	A	1.222e^-4	0.993	SYNONYMOUS_CODING Efa6
3L	1334850	3L_1334850_SNP [dm3] 3L_1334850_SNP [dm6]	C	A	1.232e^-4	0.993	START_GAINED CG2211 UTR_5_PRIME CG2211 UPSTREAM l_3_02640 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1332284	3L_1332284_DEL [dm3] 3L_1332284_DEL [dm6]	TAT	T	1.240e^-4	0.993	UTR_3_PRIME msd1 DOWNSTREAM msd5 & 2 others
2R	5981837	2R_5981837_SNP [dm3] 2R_10094332_SNP [dm6]	G	A	1.250e^-4	0.993	SYNONYMOUS_CODING CG2269	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8634326	3L_8634326_SNP [dm3] 3L_8641226_SNP [dm6]	C	T	1.255e^-4	0.993	INTRON Cpr66D
2R	2606988	2R_2606988_SNP [dm3] 2R_6719483_SNP [dm6]	G	A	1.256e^-4	0.993	SYNONYMOUS_CODING Zip42C.2	TF binding site mE1_TFBS_cad
3R	14194833	3R_14194833_SNP [dm3] 3R_18369111_SNP [dm6]	A	G	1.256e^-4	0.993	UTR_3_PRIME gl INTRON gl
X	17343578	X_17343578_SNP [dm3] X_17449545_SNP [dm6]	A	C	1.268e^-4	0.993	NON_SYNONYMOUS_CODING CG8568 UPSTREAM p-cup
3L	17180481	3L_17180481_SNP [dm3] 3L_17187381_SNP [dm6]	C	T	1.268e^-4	0.993	INTRON Rbp6
3R	20207885	3R_20207885_SNP [dm3] 3R_24382163_SNP [dm6]	G	A	1.268e^-4	0.993	DOWNSTREAM CG17780 INTERGENIC
X	18173809	X_18173809_SNP [dm3] X_18279776_SNP [dm6]	T	C	1.272e^-4	0.993	SYNONYMOUS_CODING upd3	TF binding site mE1_TFBS_chinmo
3R	6272334	3R_6272334_SNP [dm3] 3R_10446612_SNP [dm6]	C	T	1.274e^-4	0.993	INTERGENIC
2L	824935	2L_824935_SNP [dm3] 2L_824935_SNP [dm6]	T	C	1.276e^-4	0.993	NON_SYNONYMOUS_CODING CG3862 DOWNSTREAM CG3662	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
3L	7309920	3L_7309920_SNP [dm3] 3L_7316820_SNP [dm6]	T	A	1.282e^-4	0.993	INTERGENIC
2L	15017785	2L_15017785_SNP [dm3] 2L_15017785_SNP [dm6]	A	C	1.283e^-4	0.993	INTRON GABA-B-R1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	992345	2L_992345_SNP [dm3] 2L_992345_SNP [dm6]	G	C	1.284e^-4	0.993	INTERGENIC
2L	1024679	2L_1024679_SNP [dm3] 2L_1024679_SNP [dm6]	A	T	1.284e^-4	0.993	INTRON IA-2
3R	20257370	3R_20257370_DEL [dm3] 3R_24431648_DEL [dm6]	GAACGTCTTTTTTCACATTC...	G	1.288e^-4	0.993	INTRON nAChRalpha1
3R	21518606	3R_21518606_SNP [dm3] 3R_25692884_SNP [dm6]	C	T	1.290e^-4	0.993	INTERGENIC
2R	974598	2R_974598_SNP [dm3] 2R_5087093_SNP [dm6]	C	T	1.291e^-4	0.993	INTERGENIC
2L	9584906	2L_9584906_SNP [dm3] 2L_9584906_SNP [dm6]	T	G	1.295e^-4	0.993	EXON CR43621	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	19233514	2L_19233514_SNP [dm3] 2L_19233514_SNP [dm6]	A	G	1.299e^-4	0.993	INTERGENIC
2R	12827534	2R_12827534_SNP [dm3] 2R_16940029_SNP [dm6]	C	T	1.305e^-4	0.993	INTRON Pkc53E
3L	11400050	3L_11400050_INS [dm3] 3L_11406950_INS [dm6]	C	CC	1.306e^-4	0.993	DOWNSTREAM CR44363 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	840916	2L_840916_INS [dm3] 2L_840916_INS [dm6]	A	AA	1.313e^-4	0.993	INTRON drongo
2L	12429705	2L_12429705_SNP [dm3] 2L_12429705_SNP [dm6]	T	C	1.319e^-4	0.993	SYNONYMOUS_CODING CG6388 DOWNSTREAM CG5435	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	20884373	2L_20884373_INS [dm3] 2L_20884373_INS [dm6]	A	ATTCCACTTACAACA...	1.320e^-4	0.993	INTRON sky & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	977258	2R_977258_SNP [dm3] 2R_5089753_SNP [dm6]	G	C	1.325e^-4	0.993	UPSTREAM CG3107 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk
X	5038665	X_5038665_SNP [dm3] X_5144632_SNP [dm6]	T	C	1.330e^-4	0.993	INTRON rg & 1 other
2L	13124590	2L_13124590_SNP [dm3] 2L_13124590_SNP [dm6]	T	G	1.335e^-4	0.993	INTERGENIC
3L	1615816	3L_1615816_SNP [dm3] 3L_1615816_SNP [dm6]	A	T	1.350e^-4	0.993	UPSTREAM CG12105 INTRON CG33791 & 1 other
2L	5017579	2L_5017579_SNP [dm3] 2L_5017579_SNP [dm6]	T	G	1.355e^-4	0.993	SYNONYMOUS_CODING vkg	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	9666723	X_9666723_SNP [dm3] X_9772690_SNP [dm6]	T	C	1.355e^-4	0.993	INTERGENIC
X	10343164	X_10343164_DEL [dm3] X_10449131_DEL [dm6]	TTCGCAT	T	1.357e^-4	0.993	INTRON CG32683
2L	14129154	2L_14129154_SNP [dm3] 2L_14129154_SNP [dm6]	T	C	1.358e^-4	0.993	INTERGENIC
2L	6459334	2L_6459334_SNP [dm3] 2L_6459334_SNP [dm6]	A	G	1.359e^-4	0.993	UTR_3_PRIME CG16947 DOWNSTREAM frj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad
3R	21511031	3R_21511031_SNP [dm3] 3R_25685309_SNP [dm6]	G	T	1.359e^-4	0.993	UTR_3_PRIME CLS UPSTREAM RpL27	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	17635578	2R_17635578_SNP [dm3] 2R_21748073_SNP [dm6]	C	T	1.370e^-4	0.993	INTERGENIC
2R	11399653	2R_11399653_SNP [dm3] 2R_15512148_SNP [dm6]	C	T	1.379e^-4	0.993	SYNONYMOUS_CODING GalNAc-T1
3R	21510713	3R_21510713_SNP [dm3] 3R_25684991_SNP [dm6]	T	A	1.396e^-4	0.993	UTR_5_PRIME RpL27 DOWNSTREAM CLS INTRON RpL27	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	2315248	2L_2315248_SNP [dm3] 2L_2315248_SNP [dm6]	T	C	1.411e^-4	0.993	INTRON CG9967 & 1 other
2R	8550310	2R_8550310_SNP [dm3] 2R_12662805_SNP [dm6]	A	C	1.413e^-4	0.993	UPSTREAM nemy INTRON nemy
2L	17938424	2L_17938424_SNP [dm3] 2L_17938424_SNP [dm6]	G	A	1.420e^-4	0.993	DOWNSTREAM CR44399 INTERGENIC
3L	1190231	3L_1190231_SNP [dm3] 3L_1190231_SNP [dm6]	C	T	1.424e^-4	0.993	SYNONYMOUS_CODING CG13912 DOWNSTREAM Trh	TF binding site mE1_TFBS_cad
3R	11006950	3R_11006950_SNP [dm3] 3R_15181228_SNP [dm6]	A	C	1.439e^-4	0.993	UPSTREAM Mf INTRON Gyc88E & 1 other
2L	1024651	2L_1024651_SNP [dm3] 2L_1024651_SNP [dm6]	G	T	1.447e^-4	0.993	INTRON IA-2
3L	3029030	3L_3029030_SNP [dm3] 3L_3029030_SNP [dm6]	A	G	1.453e^-4	0.993	INTERGENIC
2L	13172342	2L_13172342_SNP [dm3] 2L_13172342_SNP [dm6]	G	A	1.453e^-4	0.993	SYNONYMOUS_CODING Sfmbt
3R	11421171	3R_11421171_SNP [dm3] 3R_15595449_SNP [dm6]	T	G	1.459e^-4	0.993	INTERGENIC
2L	12166691	2L_12166691_SNP [dm3] 2L_12166691_SNP [dm6]	T	C	1.459e^-4	0.993	UTR_3_PRIME ZnT33D INTRON CG31760
X	9560807	X_9560807_INS [dm3] X_9666774_INS [dm6]	T	TT	1.474e^-4	0.993	UTR_3_PRIME nej
3L	5470428	3L_5470428_SNP [dm3] 3L_5477328_SNP [dm6]	G	A	1.474e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	4484333	2R_4484333_SNP [dm3] 2R_8596828_SNP [dm6]	A	T	1.477e^-4	0.993	DOWNSTREAM CG8735 INTERGENIC
3L	5192929	3L_5192929_SNP [dm3] 3L_5199829_SNP [dm6]	G	T	1.478e^-4	0.993	INTRON shep
2L	13334656	2L_13334656_DEL [dm3] 2L_13334656_DEL [dm6]	AAACCGAACAATT...	A	1.486e^-4	0.993	INTERGENIC
3L	18163979	3L_18163979_SNP [dm3] 3L_18170879_SNP [dm6]	T	A	1.495e^-4	0.993	INTRON W
3L	2858594	3L_2858594_DEL [dm3] 3L_2858594_DEL [dm6]	ATA	A	1.495e^-4	0.993	INTRON CG43444	insulator Insulator_Class_II.mE01
X	8871130	X_8871130_INS [dm3] X_8977097_INS [dm6]	A	AAA	1.501e^-4	0.993	DOWNSTREAM CR43836 INTRON rdgA & 1 other
3L	1612872	3L_1612872_SNP [dm3] 3L_1612872_SNP [dm6]	A	G	1.503e^-4	0.993	NON_SYNONYMOUS_CODING CG12105 INTRON CG33791 & 1 other	TF binding site mE1_TFBS_chinmo
X	10343184	X_10343184_SNP [dm3] X_10449151_SNP [dm6]	C	T	1.510e^-4	0.993	INTRON CG32683
2R	7836666	2R_7836666_DEL [dm3] 2R_11949161_DEL [dm6]	ATATGATGAA	A	1.513e^-4	0.993	INTRON CG13188
2L	1025460	2L_1025460_SNP [dm3] 2L_1025460_SNP [dm6]	T	C	1.520e^-4	0.993	DOWNSTREAM CG4375 INTRON IA-2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12166577	2L_12166577_SNP [dm3] 2L_12166577_SNP [dm6]	C	G	1.522e^-4	0.993	SYNONYMOUS_CODING ZnT33D UTR_3_PRIME ZnT33D INTRON CG31760
X	11527071	X_11527071_SNP [dm3] X_11633038_SNP [dm6]	C	A	1.522e^-4	0.993	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11774646	2L_11774646_SNP [dm3] 2L_11774646_SNP [dm6]	G	A	1.524e^-4	0.993	INTERGENIC
3R	10987232	3R_10987232_SNP [dm3] 3R_15161510_SNP [dm6]	T	C	1.532e^-4	0.993	INTRON Gyc88E	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3L	5950491	3L_5950491_SNP [dm3] 3L_5957391_SNP [dm6]	T	C	1.536e^-4	0.993	INTERGENIC
X	9666274	X_9666274_SNP [dm3] X_9772241_SNP [dm6]	T	C	1.546e^-4	0.993	INTERGENIC
X	8627764	X_8627764_SNP [dm3] X_8733731_SNP [dm6]	G	A	1.548e^-4	0.993	INTERGENIC
2R	9888434	2R_9888434_SNP [dm3] 2R_14000929_SNP [dm6]	G	A	1.554e^-4	0.993	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	12478836	2L_12478836_SNP [dm3] 2L_12478836_SNP [dm6]	G	A	1.559e^-4	0.993	INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_HSA
2R	9765546	2R_9765546_SNP [dm3] 2R_13878041_SNP [dm6]	A	T	1.560e^-4	0.993	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14424548	2L_14424548_SNP [dm3] 2L_14424548_SNP [dm6]	G	A	1.563e^-4	0.993	SYNONYMOUS_CODING Cpr35B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10937682	3R_10937682_SNP [dm3] 3R_15111960_SNP [dm6]	T	C	1.586e^-4	0.993	NON_SYNONYMOUS_CODING CG42788	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	11391456	3L_11391456_SNP [dm3] 3L_11398356_SNP [dm6]	T	C	1.595e^-4	0.993	DOWNSTREAM CG44362 INTERGENIC
3R	6265316	3R_6265316_SNP [dm3] 3R_10439594_SNP [dm6]	T	C	1.603e^-4	0.993	INTERGENIC
3L	291584	3L_291584_SNP [dm3] 3L_291584_SNP [dm6]	C	A	1.614e^-4	0.993	INTRON RhoGEF3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2L	2315230	2L_2315230_SNP [dm3] 2L_2315230_SNP [dm6]	T	C	1.624e^-4	0.993	INTRON CG9967 & 1 other
2R	9737128	2R_9737128_DEL [dm3] 2R_13849623_DEL [dm6]	TGA	T	1.624e^-4	0.993	FRAME_SHIFT CG30484 UPSTREAM CG30485
3R	21924663	3R_21924663_SNP [dm3] 3R_26098941_SNP [dm6]	T	C	1.627e^-4	0.993	UPSTREAM dys INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2858307	3L_2858307_SNP [dm3] 3L_2858307_SNP [dm6]	T	A	1.628e^-4	0.993	INTRON CG43444
2L	21977855	2L_21977855_SNP [dm3] 2L_21977855_SNP [dm6]	A	T	1.628e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5848413	3L_5848413_SNP [dm3] 3L_5855313_SNP [dm6]	A	C	1.649e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	14079260	2L_14079260_SNP [dm3] 2L_14079260_SNP [dm6]	C	T	1.652e^-4	0.993	INTRON nAChRalpha5
2R	995096	2R_995096_SNP [dm3] 2R_5107591_SNP [dm6]	A	G	1.657e^-4	0.993	INTERGENIC	transposable element FlyBase
2R	11299467	2R_11299467_SNP [dm3] 2R_15411962_SNP [dm6]	T	C	1.665e^-4	0.993	INTRON CG43729
2L	12119423	2L_12119423_SNP [dm3] 2L_12119423_SNP [dm6]	G	T	1.684e^-4	0.993	INTRON CG17211
3R	20257649	3R_20257649_SNP [dm3] 3R_24431927_SNP [dm6]	A	G	1.694e^-4	0.993	INTRON nAChRalpha1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	1332448	3L_1332448_SNP [dm3] 3L_1332448_SNP [dm6]	G	C	1.697e^-4	0.993	SYNONYMOUS_CODING msd5 DOWNSTREAM mtacp1 & 2 others
2L	22198207	2L_22198207_SNP [dm3] 2L_22198207_SNP [dm6]	C	A	1.704e^-4	0.993	UPSTREAM Ir40a INTRON Ir40a
2L	810366	2L_810366_SNP [dm3] 2L_810366_SNP [dm6]	G	T	1.704e^-4	0.993	UPSTREAM Nnf1b INTERGENIC
3L	5470430	3L_5470430_SNP [dm3] 3L_5477330_SNP [dm6]	C	T	1.709e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	1611813	3L_1611813_SNP [dm3] 3L_1611813_SNP [dm6]	G	T	1.710e^-4	0.993	NON_SYNONYMOUS_CODING CG12105 INTRON CG33791 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11185647	2L_11185647_SNP [dm3] 2L_11185647_SNP [dm6]	G	T	1.717e^-4	0.993	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	976181	2R_976181_SNP [dm3] 2R_5088676_SNP [dm6]	G	T	1.726e^-4	0.993	INTERGENIC	transposable element FlyBase
X	8796987	X_8796987_SNP [dm3] X_8902954_SNP [dm6]	T	A	1.746e^-4	0.993	INTRON Rbm13
2R	19384507	2R_19384507_SNP [dm3] 2R_23496984_SNP [dm6]	C	T	1.749e^-4	0.993	INTERGENIC
3L	5203430	3L_5203430_DEL [dm3] 3L_5210330_DEL [dm6]	AA	A	1.753e^-4	0.993	INTRON shep
X	9666807	X_9666807_SNP [dm3] X_9772774_SNP [dm6]	A	C	1.761e^-4	0.993	INTERGENIC
2L	1451144	2L_1451144_SNP [dm3] 2L_1451144_SNP [dm6]	T	C	1.761e^-4	0.993	INTERGENIC
3R	1821529	3R_1821529_SNP [dm3] 3R_5995807_SNP [dm6]	G	T	1.763e^-4	0.993	EXON CR44928
2R	4902684	2R_4902684_SNP [dm3] 2R_9015179_SNP [dm6]	A	C	1.766e^-4	0.993	INTRON CG13744
2R	19001600	2R_19001600_SNP [dm3] 2R_23114077_SNP [dm6]	A	C	1.767e^-4	0.993	INTRON CR44782	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19001607	2R_19001607_SNP [dm3] 2R_23114084_SNP [dm6]	A	G	1.767e^-4	0.993	INTRON CR44782	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13940105	2L_13940105_SNP [dm3] 2L_13940105_SNP [dm6]	T	A	1.768e^-4	0.993	INTRON Ance-3
2L	936062	2L_936062_SNP [dm3] 2L_936062_SNP [dm6]	G	A	1.769e^-4	0.993	INTRON CG4341	TF binding site mE1_TFBS_Trl
3R	24253351	3R_24253351_SNP [dm3] 3R_28427629_SNP [dm6]	A	C	1.771e^-4	0.993	INTRON beat-VI
3R	20256867	3R_20256867_SNP [dm3] 3R_24431145_SNP [dm6]	C	A	1.772e^-4	0.993	INTRON nAChRalpha1
2L	12250859	2L_12250859_SNP [dm3] 2L_12250859_SNP [dm6]	G	A	1.773e^-4	0.993	INTRON aret
X	9038205	X_9038205_SNP [dm3] X_9144172_SNP [dm6]	T	A	1.787e^-4	0.993	NON_SYNONYMOUS_CODING CG7065	TF binding site mE1_TFBS_chinmo
3R	20703517	3R_20703517_SNP [dm3] 3R_24877795_SNP [dm6]	C	G	1.788e^-4	0.993	NON_SYNONYMOUS_CODING CG31381 INTRON CG11089	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	1029693	2L_1029693_SNP [dm3] 2L_1029693_SNP [dm6]	A	C	1.788e^-4	0.993	INTRON IA-2
2L	665521	2L_665521_SNP [dm3] 2L_665521_SNP [dm6]	A	T	1.790e^-4	0.993	INTRON ds	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	11378774	3R_11378774_SNP [dm3] 3R_15553052_SNP [dm6]	T	G	1.791e^-4	0.993	UPSTREAM CG18516 INTERGENIC
X	20488016	X_20488016_SNP [dm3] X_20616989_SNP [dm6]	A	C	1.794e^-4	0.993	INTRON RunxA
2R	9271220	2R_9271220_SNP [dm3] 2R_13383715_SNP [dm6]	G	C	1.801e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12813281	3L_12813281_SNP [dm3] 3L_12820181_SNP [dm6]	A	G	1.805e^-4	0.993	SYNONYMOUS_CODING CG42588
2L	11185814	2L_11185814_SNP [dm3] 2L_11185814_SNP [dm6]	G	C	1.816e^-4	0.993	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	12547704	3R_12547704_SNP [dm3] 3R_16721982_SNP [dm6]	A	G	1.840e^-4	0.993	INTRON Ubx	TF binding site BDTNP1_TFBS_da
2L	15307592	2L_15307592_SNP [dm3] 2L_15307592_SNP [dm6]	A	T	1.840e^-4	0.993	INTERGENIC
2L	9510168	2L_9510168_SNP [dm3] 2L_9510168_SNP [dm6]	A	G	1.842e^-4	0.993	INTRON CG33298
2R	4902688	2R_4902688_SNP [dm3] 2R_9015183_SNP [dm6]	C	T	1.871e^-4	0.993	INTRON CG13744
2L	11251281	2L_11251281_SNP [dm3] 2L_11251281_SNP [dm6]	T	A	1.884e^-4	0.993	INTRON ab	TF binding site BDTNP1_TFBS_twi
2R	13828774	2R_13828774_SNP [dm3] 2R_17941269_SNP [dm6]	T	C	1.893e^-4	0.993	INTERGENIC
2R	9762915	2R_9762915_SNP [dm3] 2R_13875410_SNP [dm6]	G	C	1.895e^-4	0.993	SYNONYMOUS_CODING shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10464626	2L_10464626_SNP [dm3] 2L_10464626_SNP [dm6]	A	G	1.910e^-4	0.993	SYNONYMOUS_CODING RluA-1 UTR_3_PRIME RluA-1
2L	20461498	2L_20461498_SNP [dm3] 2L_20461498_SNP [dm6]	C	A	1.911e^-4	0.993	NON_SYNONYMOUS_CODING Cdc23 DOWNSTREAM CG2493	TF binding site mE1_TFBS_cad
2R	3517555	2R_3517555_SNP [dm3] 2R_7630050_SNP [dm6]	T	C	1.914e^-4	0.993	INTRON CG43340	TF binding site mE1_TFBS_cad
2L	9326726	2L_9326726_SNP [dm3] 2L_9326726_SNP [dm6]	C	A	1.920e^-4	0.993	UPSTREAM CR45457 DOWNSTREAM CR45456 INTERGENIC	TF binding site mE1_TFBS_HSA
X	8818305	X_8818305_SNP [dm3] X_8924272_SNP [dm6]	A	G	1.926e^-4	0.993	SYNONYMOUS_CODING CG43255 UPSTREAM CG12661 & 1 other INTRON rdgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	7217031	3L_7217031_SNP [dm3] 3L_7223931_SNP [dm6]	G	A	1.932e^-4	0.993	DOWNSTREAM CR45410 INTERGENIC
2L	3723093	2L_3723093_SNP [dm3] 2L_3723093_SNP [dm6]	C	T	1.932e^-4	0.993	SYNONYMOUS_CODING Shaw	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	2329572	X_2329572_SNP [dm3] X_2435539_SNP [dm6]	A	G	1.936e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13788555	2R_13788555_MNP [dm3] 2R_17901050_MNP [dm6]	GATTGA	TCAATC	1.937e^-4	0.993	INTRON Elk
2L	1024692	2L_1024692_SNP [dm3] 2L_1024692_SNP [dm6]	C	G	1.939e^-4	0.993	INTRON IA-2
3L	4478638	3L_4478638_SNP [dm3] 3L_4478638_SNP [dm6]	C	T	1.941e^-4	0.993	INTERGENIC
2R	13974652	2R_13974652_INS [dm3] 2R_18087147_INS [dm6]	A	AA	1.944e^-4	0.993	INTRON CG34386
2L	1026105	2L_1026105_SNP [dm3] 2L_1026105_SNP [dm6]	A	G	1.951e^-4	0.993	UTR_3_PRIME CG4375 INTRON IA-2
3L	7963025	3L_7963025_SNP [dm3] 3L_7969925_SNP [dm6]	A	C	1.952e^-4	0.993	UPSTREAM RNaseX25 INTERGENIC	TF binding site mE1_TFBS_inv
2R	19303323	2R_19303323_SNP [dm3] 2R_23415800_SNP [dm6]	C	T	1.963e^-4	0.993	UPSTREAM CG30411 INTRON CG9812	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2L	1015953	2L_1015953_SNP [dm3] 2L_1015953_SNP [dm6]	A	G	1.963e^-4	0.993	INTRON IA-2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10806591	2L_10806591_SNP [dm3] 2L_10806591_SNP [dm6]	A	G	1.978e^-4	0.993	SYNONYMOUS_CODING Nos UTR_3_PRIME Nos	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13764237	2R_13764237_SNP [dm3] 2R_17876732_SNP [dm6]	C	A	1.990e^-4	0.993	DOWNSTREAM CG30325 INTRON Elk
3L	3406515	3L_3406515_SNP [dm3] 3L_3406515_SNP [dm6]	T	G	2.000e^-4	0.993	INTRON sty
2L	16470991	2L_16470991_SNP [dm3] 2L_16470991_SNP [dm6]	T	C	2.002e^-4	0.993	INTRON dac	regulatory region REDfly_CRMs
2L	15307486	2L_15307486_SNP [dm3] 2L_15307486_SNP [dm6]	G	A	2.004e^-4	0.993	INTERGENIC
3R	19081941	3R_19081941_SNP [dm3] 3R_23256219_SNP [dm6]	A	G	2.015e^-4	0.993	SYNONYMOUS_CODING wda	TF binding site mE1_TFBS_cad
3L	2609146	3L_2609146_SNP [dm3] 3L_2609146_SNP [dm6]	C	T	2.017e^-4	0.993	DOWNSTREAM Pxn INTRON Pxn
3R	10987207	3R_10987207_SNP [dm3] 3R_15161485_SNP [dm6]	A	T	2.030e^-4	0.993	INTRON Gyc88E	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	11398497	2R_11398497_SNP [dm3] 2R_15510992_SNP [dm6]	T	C	2.035e^-4	0.993	UPSTREAM GalNAc-T1 INTERGENIC
3R	21518599	3R_21518599_SNP [dm3] 3R_25692877_SNP [dm6]	T	G	2.040e^-4	0.993	INTERGENIC
3L	2479423	3L_2479423_SNP [dm3] 3L_2479423_SNP [dm6]	C	A	2.041e^-4	0.993	UPSTREAM Cyp4d20 INTRON CG45186
2L	4199960	2L_4199960_SNP [dm3] 2L_4199960_SNP [dm6]	G	A	2.045e^-4	0.993	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19233508	2L_19233508_SNP [dm3] 2L_19233508_SNP [dm6]	G	A	2.061e^-4	0.993	INTERGENIC
3L	2479416	3L_2479416_SNP [dm3] 3L_2479416_SNP [dm6]	A	G	2.063e^-4	0.993	UPSTREAM Cyp4d20 INTRON CG45186
2L	2001893	2L_2001893_SNP [dm3] 2L_2001893_SNP [dm6]	A	G	2.067e^-4	0.993	INTRON CG33543 EXON CR43464
3L	1781622	3L_1781622_SNP [dm3] 3L_1781622_SNP [dm6]	G	A	2.068e^-4	0.993	SYNONYMOUS_CODING alpha-Spec	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	22063444	X_22063444_SNP [dm3] X_22661608_SNP [dm6]	A	T	2.069e^-4	0.993	INTRON CR44997
2L	995434	2L_995434_SNP [dm3] 2L_995434_SNP [dm6]	A	G	2.081e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	995436	2L_995436_SNP [dm3] 2L_995436_SNP [dm6]	C	T	2.081e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	18158999	3R_18158999_SNP [dm3] 3R_22333277_SNP [dm6]	C	T	2.085e^-4	0.993	NON_SYNONYMOUS_CODING CG5391 DOWNSTREAM CG13862 & 1 other
2L	12166706	2L_12166706_SNP [dm3] 2L_12166706_SNP [dm6]	T	C	2.089e^-4	0.993	DOWNSTREAM ZnT33D INTRON CG31760
2L	10171579	2L_10171579_SNP [dm3] 2L_10171579_SNP [dm6]	C	T	2.091e^-4	0.993	INTRON CG44153
2R	11303900	2R_11303900_SNP [dm3] 2R_15416395_SNP [dm6]	A	G	2.100e^-4	0.993	NON_SYNONYMOUS_CODING CG43729 INTRON CG43729	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7684841	2L_7684841_SNP [dm3] 2L_7684841_SNP [dm6]	T	C	2.104e^-4	0.993	DOWNSTREAM Myo28B1 INTRON Myo28B1 & 1 other
2R	7836688	2R_7836688_SNP [dm3] 2R_11949183_SNP [dm6]	C	T	2.106e^-4	0.993	INTRON CG13188
2L	7710549	2L_7710549_SNP [dm3] 2L_7710549_SNP [dm6]	T	C	2.112e^-4	0.993	UTR_3_PRIME Tep3 UPSTREAM Ntl & 2 others	TF binding site mE1_TFBS_cad
2L	15307459	2L_15307459_DEL [dm3] 2L_15307459_DEL [dm6]	AA	A	2.113e^-4	0.993	INTERGENIC
2L	468431	2L_468431_SNP [dm3] 2L_468431_SNP [dm6]	T	C	2.115e^-4	0.993	INTRON CG4297
3L	2757632	3L_2757632_SNP [dm3] 3L_2757632_SNP [dm6]	C	T	2.130e^-4	0.993	INTRON Mrtf
X	9302488	X_9302488_SNP [dm3] X_9408455_SNP [dm6]	T	A	2.134e^-4	0.993	INTRON mgl
X	8876544	X_8876544_SNP [dm3] X_8982511_SNP [dm6]	A	G	2.139e^-4	0.993	INTRON rdgA & 1 other
2L	8289764	2L_8289764_SNP [dm3] 2L_8289764_SNP [dm6]	T	C	2.148e^-4	0.993	UPSTREAM tRNA:K5:29A INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	10913932	2L_10913932_SNP [dm3] 2L_10913932_SNP [dm6]	G	T	2.154e^-4	0.993	INTERGENIC
2R	9124588	2R_9124588_SNP [dm3] 2R_13237083_SNP [dm6]	T	G	2.154e^-4	0.993	DOWNSTREAM CG4679 & 1 other INTERGENIC
3L	8634214	3L_8634214_SNP [dm3] 3L_8641114_SNP [dm6]	C	T	2.156e^-4	0.993	INTRON Cpr66D
2L	440369	2L_440369_SNP [dm3] 2L_440369_SNP [dm6]	T	C	2.159e^-4	0.993	DOWNSTREAM CR43717 INTRON ex
X	11527074	X_11527074_SNP [dm3] X_11633041_SNP [dm6]	C	A	2.161e^-4	0.993	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6927456	2R_6927456_SNP [dm3] 2R_11039951_SNP [dm6]	T	A	2.167e^-4	0.993	INTRON luna
X	9560958	X_9560958_SNP [dm3] X_9666925_SNP [dm6]	C	T	2.186e^-4	0.993	UTR_3_PRIME nej
2R	17134017	2R_17134017_SNP [dm3] 2R_21246512_SNP [dm6]	T	A	2.197e^-4	0.993	INTRON ASPP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	10936928	2L_10936928_SNP [dm3] 2L_10936928_SNP [dm6]	A	C	2.199e^-4	0.993	UPSTREAM CG14072 INTRON dpr2 & 1 other
2R	13151643	2R_13151643_SNP [dm3] 2R_17264138_SNP [dm6]	T	C	2.206e^-4	0.993	INTRON mbl	TF binding site mE1_TFBS_Trl
2L	11409903	2L_11409903_SNP [dm3] 2L_11409903_SNP [dm6]	T	C	2.233e^-4	0.993	INTERGENIC	regulatory region REDfly_CRMs
3R	19364521	3R_19364521_SNP [dm3] 3R_23538799_SNP [dm6]	C	A	2.267e^-4	0.993	START_GAINED CG10168 UTR_5_PRIME CG10168
3L	15395710	3L_15395710_SNP [dm3] 3L_15402610_SNP [dm6]	T	G	2.271e^-4	0.993	INTERGENIC
2R	10034463	2R_10034463_INS [dm3] 2R_14146958_INS [dm6]	G	TA	2.278e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	10673694	2R_10673694_SNP [dm3] 2R_14786189_SNP [dm6]	T	A	2.283e^-4	0.993	INTRON kn
3L	12802499	3L_12802499_SNP [dm3] 3L_12809399_SNP [dm6]	G	A	2.289e^-4	0.993	NON_SYNONYMOUS_CODING CG32110 INTRON Sap130	TF binding site mE1_TFBS_cad
3L	5203515	3L_5203515_SNP [dm3] 3L_5210415_SNP [dm6]	A	G	2.298e^-4	0.993	INTRON shep
2L	1093914	2L_1093914_SNP [dm3] 2L_1093914_SNP [dm6]	A	T	2.300e^-4	0.993	INTRON CG4629
2R	780620	2R_780620_DEL [dm3] 2R_4893115_DEL [dm6]	GTAAGA	G	2.303e^-4	0.993	INTERGENIC	transposable element FlyBase
3L	12615001	3L_12615001_SNP [dm3] 3L_12621901_SNP [dm6]	T	C	2.304e^-4	0.993	DOWNSTREAM caup INTERGENIC
2L	1025414	2L_1025414_SNP [dm3] 2L_1025414_SNP [dm6]	C	T	2.309e^-4	0.993	DOWNSTREAM CG4375 INTRON IA-2	TF binding site mE1_TFBS_chinmo
2L	3489673	2L_3489673_SNP [dm3] 2L_3489673_SNP [dm6]	G	A	2.310e^-4	0.993	INTRON CG15414
X	8681508	X_8681508_SNP [dm3] X_8787475_SNP [dm6]	C	G	2.315e^-4	0.993	INTRON Lim1
2R	15401191	2R_15401191_SNP [dm3] 2R_19513686_SNP [dm6]	T	G	2.322e^-4	0.993	UPSTREAM Ir56d INTERGENIC
2R	4474996	2R_4474996_SNP [dm3] 2R_8587491_SNP [dm6]	G	A	2.334e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	4902606	2R_4902606_SNP [dm3] 2R_9015101_SNP [dm6]	G	T	2.334e^-4	0.993	INTRON CG13744
X	3320777	X_3320777_SNP [dm3] X_3426744_SNP [dm6]	C	G	2.335e^-4	0.993	DOWNSTREAM tRNA:CR32493 INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	11006948	3R_11006948_SNP [dm3] 3R_15181226_SNP [dm6]	A	G	2.338e^-4	0.993	UPSTREAM Mf INTRON Gyc88E & 1 other
2L	14997717	2L_14997717_SNP [dm3] 2L_14997717_SNP [dm6]	A	G	2.342e^-4	0.993	UPSTREAM mol INTERGENIC	TF binding site mE1_TFBS_Trl
3L	18701053	3L_18701053_INS [dm3] 3L_18707953_INS [dm6]	A	AAC	2.346e^-4	0.993	EXON CR44674
2L	6687361	2L_6687361_SNP [dm3] 2L_6687361_SNP [dm6]	A	G	2.346e^-4	0.993	SYNONYMOUS_CODING Tsp UPSTREAM CG11327	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	20257394	3R_20257394_DEL [dm3] 3R_24431672_DEL [dm6]	AATGTT	A	2.358e^-4	0.993	INTRON nAChRalpha1
2L	8311541	2L_8311541_SNP [dm3] 2L_8311541_SNP [dm6]	A	G	2.371e^-4	0.993	UTR_5_PRIME CG7806 UPSTREAM CG7810	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	12250861	2L_12250861_SNP [dm3] 2L_12250861_SNP [dm6]	G	A	2.395e^-4	0.993	INTRON aret
2L	9326808	2L_9326808_SNP [dm3] 2L_9326808_SNP [dm6]	G	T	2.399e^-4	0.993	UPSTREAM CR45457 & 1 other DOWNSTREAM CR45456 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	979340	2R_979340_SNP [dm3] 2R_5091835_SNP [dm6]	C	A	2.406e^-4	0.993	UPSTREAM CG3107 INTRON CG3107	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	3029118	3L_3029118_SNP [dm3] 3L_3029118_SNP [dm6]	C	A	2.406e^-4	0.993	INTERGENIC
2L	1870525	2L_1870525_SNP [dm3] 2L_1870525_SNP [dm6]	T	C	2.412e^-4	0.993	NON_SYNONYMOUS_CODING CG7295 INTRON CG31663
X	8282413	X_8282413_SNP [dm3] X_8388380_SNP [dm6]	G	A	2.412e^-4	0.993	SYNONYMOUS_CODING CG1387	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9473397	2L_9473397_SNP [dm3] 2L_9473397_SNP [dm6]	G	A	2.415e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	10496022	3R_10496022_SNP [dm3] 3R_14670300_SNP [dm6]	A	T	2.416e^-4	0.993	SYNONYMOUS_CODING Meltrin	TF binding site mE1_TFBS_cad
2L	9326753	2L_9326753_SNP [dm3] 2L_9326753_SNP [dm6]	C	T	2.427e^-4	0.993	UPSTREAM CR45457 & 1 other DOWNSTREAM CR45456 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	7684828	2L_7684828_INS [dm3] 2L_7684828_INS [dm6]	C	ATACTTACCACACTT...	2.428e^-4	0.993	DOWNSTREAM Myo28B1 INTRON Myo28B1 & 1 other
3L	827055	3L_827055_SNP [dm3] 3L_827055_SNP [dm6]	A	G	2.444e^-4	0.993	DOWNSTREAM snoRNA:Me28S-C788b & 3 others INTRON CG13900 & 1 other
2L	2292315	2L_2292315_SNP [dm3] 2L_2292315_SNP [dm6]	A	G	2.461e^-4	0.993	INTERGENIC
3R	14194852	3R_14194852_DEL [dm3] 3R_18369130_DEL [dm6]	AA	A	2.465e^-4	0.993	UTR_3_PRIME gl INTRON gl
X	8186991	X_8186991_SNP [dm3] X_8292958_SNP [dm6]	G	A	2.466e^-4	0.993	INTRON nAChRalpha3
2R	12175292	2R_12175292_SNP [dm3] 2R_16287787_SNP [dm6]	A	G	2.467e^-4	0.993	SYNONYMOUS_CODING CG30324 DOWNSTREAM CG30099 & 1 other	TF binding site mE1_TFBS_cad
3R	1261944	3R_1261944_SNP [dm3] 3R_5436222_SNP [dm6]	A	C	2.472e^-4	0.993	INTRON CG14669
3L	3518118	3L_3518118_SNP [dm3] 3L_3518118_SNP [dm6]	T	A	2.474e^-4	0.993	INTRON Eip63E
3L	4306703	3L_4306703_SNP [dm3] 3L_4306703_SNP [dm6]	C	T	2.483e^-4	0.993	INTRON dyl
2R	5384599	2R_5384599_SNP [dm3] 2R_9497094_SNP [dm6]	A	G	2.496e^-4	0.993	INTRON Wnt2	TF binding site mE1_TFBS_chinmo
2R	5384608	2R_5384608_SNP [dm3] 2R_9497103_SNP [dm6]	C	T	2.496e^-4	0.993	INTRON Wnt2	TF binding site mE1_TFBS_chinmo
2R	5384633	2R_5384633_SNP [dm3] 2R_9497128_SNP [dm6]	T	C	2.496e^-4	0.993	INTRON Wnt2	TF binding site mE1_TFBS_chinmo
X	9666509	X_9666509_SNP [dm3] X_9772476_SNP [dm6]	G	A	2.496e^-4	0.993	INTERGENIC
3R	24266236	3R_24266236_SNP [dm3] 3R_28440514_SNP [dm6]	A	C	2.510e^-4	0.993	INTRON beat-VI
3L	11399958	3L_11399958_SNP [dm3] 3L_11406858_SNP [dm6]	C	A	2.512e^-4	0.993	DOWNSTREAM CR44363 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3R	23965476	3R_23965476_SNP [dm3] 3R_28139754_SNP [dm6]	C	T	2.516e^-4	0.993	INTERGENIC
2R	2633374	2R_2633374_SNP [dm3] 2R_6745869_SNP [dm6]	C	A	2.520e^-4	0.993	UTR_3_PRIME phtf UPSTREAM CG3267	TF binding site BDTNP1_TFBS_twi
3R	14646178	3R_14646178_SNP [dm3] 3R_18820456_SNP [dm6]	C	T	2.524e^-4	0.993	INTRON CG18208
3R	24466802	3R_24466802_SNP [dm3] 3R_28641080_SNP [dm6]	T	C	2.531e^-4	0.993	DOWNSTREAM CG14062 INTERGENIC	TF binding site mE1_TFBS_cad
3L	10906520	3L_10906520_SNP [dm3] 3L_10913420_SNP [dm6]	C	T	2.537e^-4	0.993	INTERGENIC
X	22065711	X_22065711_SNP [dm3] X_22663875_SNP [dm6]	A	G	2.545e^-4	0.993	INTRON CR44997
2R	6276930	2R_6276930_DEL [dm3] 2R_10389425_DEL [dm6]	TG	T	2.559e^-4	0.993	INTRON CG42732
3R	24733554	3R_24733554_SNP [dm3] 3R_28907832_SNP [dm6]	G	A	2.561e^-4	0.993	SYNONYMOUS_CODING Doa INTRON Doa	TF binding site mE1_TFBS_chinmo
2L	12156186	2L_12156186_SNP [dm3] 2L_12156186_SNP [dm6]	T	A	2.566e^-4	0.993	INTRON CG31760
X	9666895	X_9666895_SNP [dm3] X_9772862_SNP [dm6]	T	C	2.569e^-4	0.993	INTERGENIC
2L	8311377	2L_8311377_SNP [dm3] 2L_8311377_SNP [dm6]	G	T	2.592e^-4	0.993	UPSTREAM CG7806 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2L	10011099	2L_10011099_SNP [dm3] 2L_10011099_SNP [dm6]	G	A	2.593e^-4	0.993	SYNONYMOUS_CODING Trp1
X	9666284	X_9666284_SNP [dm3] X_9772251_SNP [dm6]	G	A	2.593e^-4	0.993	INTERGENIC
3L	5957094	3L_5957094_SNP [dm3] 3L_5963994_SNP [dm6]	C	T	2.594e^-4	0.993	INTERGENIC
3L	3772709	3L_3772709_SNP [dm3] 3L_3772709_SNP [dm6]	T	C	2.601e^-4	0.993	INTRON CG32264
3L	3687432	3L_3687432_INS [dm3] 3L_3687432_INS [dm6]	T	TTAATCTGTT	2.602e^-4	0.993	INTERGENIC
X	4237185	X_4237185_INS [dm3] X_4343152_INS [dm6]	T	TT	2.620e^-4	0.993	INTRON norpA
3R	9896432	3R_9896432_SNP [dm3] 3R_14070710_SNP [dm6]	T	G	2.624e^-4	0.993	INTRON foxo
3L	2479401	3L_2479401_SNP [dm3] 3L_2479401_SNP [dm6]	G	A	2.624e^-4	0.993	UPSTREAM Cyp4d20 INTRON CG45186
2L	1024515	2L_1024515_SNP [dm3] 2L_1024515_SNP [dm6]	A	G	2.626e^-4	0.993	INTRON IA-2
2L	10457726	2L_10457726_SNP [dm3] 2L_10457726_SNP [dm6]	C	T	2.631e^-4	0.993	UTR_5_PRIME LM408 UPSTREAM CG5322	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	8922994	X_8922994_SNP [dm3] X_9028961_SNP [dm6]	A	C	2.648e^-4	0.993	UTR_3_PRIME rdgA INTRON CR43836
2R	11397347	2R_11397347_SNP [dm3] 2R_15509842_SNP [dm6]	G	A	2.649e^-4	0.993	INTERGENIC
2R	13788787	2R_13788787_SNP [dm3] 2R_17901282_SNP [dm6]	C	T	2.651e^-4	0.993	INTRON Elk
2R	4542448	2R_4542448_SNP [dm3] 2R_8654943_SNP [dm6]	C	G	2.656e^-4	0.993	INTRON ptc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4199891	2L_4199891_SNP [dm3] 2L_4199891_SNP [dm6]	C	T	2.661e^-4	0.993	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	780619	2R_780619_SNP [dm3] 2R_4893114_SNP [dm6]	G	C	2.669e^-4	0.993	INTERGENIC	transposable element FlyBase
2L	19233529	2L_19233529_SNP [dm3] 2L_19233529_SNP [dm6]	A	G	2.678e^-4	0.993	INTERGENIC
3R	26649828	3R_26649828_SNP [dm3] 3R_30824106_SNP [dm6]	G	A	2.689e^-4	0.993	INTRON cindr	TF binding site mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA
3R	21517686	3R_21517686_DEL [dm3] 3R_25691964_DEL [dm6]	CAGCG	T	2.692e^-4	0.993	INTERGENIC
2L	9949069	2L_9949069_SNP [dm3] 2L_9949069_SNP [dm6]	G	A	2.710e^-4	0.993	INTERGENIC
2L	435086	2L_435086_SNP [dm3] 2L_435086_SNP [dm6]	T	G	2.715e^-4	0.993	INTRON ex
2L	436697	2L_436697_SNP [dm3] 2L_436697_SNP [dm6]	T	C	2.721e^-4	0.993	INTRON ex
2R	14659105	2R_14659105_SNP [dm3] 2R_18771600_SNP [dm6]	G	C	2.724e^-4	0.993	NON_SYNONYMOUS_CODING Mctp INTRON Mctp
X	8679667	X_8679667_DEL [dm3] X_8785634_DEL [dm6]	TTTT	T	2.734e^-4	0.993	UPSTREAM Lim1 INTRON Lim1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
2L	13145688	2L_13145688_SNP [dm3] 2L_13145688_SNP [dm6]	T	A	2.735e^-4	0.993	UPSTREAM CR44199 INTERGENIC	TF binding site mE1_TFBS_inv
3R	9891307	3R_9891307_SNP [dm3] 3R_14065585_SNP [dm6]	A	G	2.742e^-4	0.993	INTRON foxo
3R	14652073	3R_14652073_DEL [dm3] 3R_18826351_DEL [dm6]	CG	C	2.751e^-4	0.993	INTRON CG18208
2R	11397361	2R_11397361_INS [dm3] 2R_15509856_INS [dm6]	G	GG	2.756e^-4	0.993	INTERGENIC
2L	11185824	2L_11185824_SNP [dm3] 2L_11185824_SNP [dm6]	C	T	2.757e^-4	0.993	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	5199046	3R_5199046_SNP [dm3] 3R_9373324_SNP [dm6]	A	T	2.758e^-4	0.993	SPLICE_SITE_REGION FER INTRON FER
3L	2551434	3L_2551434_SNP [dm3] 3L_2551434_SNP [dm6]	C	T	2.758e^-4	0.993	INTRON Spn
2L	12281801	2L_12281801_SNP [dm3] 2L_12281801_SNP [dm6]	C	T	2.765e^-4	0.993	INTRON aret
2L	13775857	2L_13775857_SNP [dm3] 2L_13775857_SNP [dm6]	A	C	2.766e^-4	0.993	INTRON CG9008
X	20442335	X_20442335_SNP [dm3] X_20571308_SNP [dm6]	G	A	2.770e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	18368399	X_18368399_DEL [dm3] X_18474366_DEL [dm6]	CACACACTTTCGGGCGAATC...	C	2.796e^-4	0.993	INTRON CG32547
2L	1030844	2L_1030844_SNP [dm3] 2L_1030844_SNP [dm6]	C	T	2.817e^-4	0.993	INTRON IA-2
2R	12827443	2R_12827443_DEL [dm3] 2R_16939938_DEL [dm6]	GTGTGTG	G	2.821e^-4	0.993	DOWNSTREAM CG43789 INTRON Pkc53E
2R	9524349	2R_9524349_SNP [dm3] 2R_13636844_SNP [dm6]	C	A	2.839e^-4	0.993	INTRON fas
3L	1040585	3L_1040585_SNP [dm3] 3L_1040585_SNP [dm6]	T	C	2.840e^-4	0.993	INTRON bab1	TF binding site mE1_TFBS_cad
2R	11398845	2R_11398845_SNP [dm3] 2R_15511340_SNP [dm6]	G	C	2.841e^-4	0.993	UPSTREAM GalNAc-T1 INTERGENIC
3L	605979	3L_605979_SNP [dm3] 3L_605979_SNP [dm6]	T	A	2.846e^-4	0.993	INTRON Reg-2	TF binding site BDTNP1_TFBS_dl
2R	18367765	2R_18367765_SNP [dm3] 2R_22480260_SNP [dm6]	C	G	2.848e^-4	0.993	SYNONYMOUS_CODING CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	2670248	2R_2670248_SNP [dm3] 2R_6782743_SNP [dm6]	A	T	2.849e^-4	0.993	INTRON Epac
2L	7663187	2L_7663187_SNP [dm3] 2L_7663187_SNP [dm6]	A	G	2.855e^-4	0.993	INTRON Slob
3R	20714513	3R_20714513_SNP [dm3] 3R_24888791_SNP [dm6]	A	G	2.868e^-4	0.993	INTRON CG31121	TF binding site mE1_TFBS_cad
X	12348575	X_12348575_SNP [dm3] X_12454542_SNP [dm6]	C	A	2.882e^-4	0.993	UPSTREAM CG15927 DOWNSTREAM Pkcdelta INTERGENIC
2R	1359251	2R_1359251_SNP [dm3] 2R_5471746_SNP [dm6]	G	C	2.884e^-4	0.993	INTRON CG30440	TF binding site mE1_TFBS_cad transposable element FlyBase
2R	7259856	2R_7259856_SNP [dm3] 2R_11372351_SNP [dm6]	C	T	2.887e^-4	0.993	INTERGENIC
2L	2292188	2L_2292188_SNP [dm3] 2L_2292188_SNP [dm6]	C	T	2.891e^-4	0.993	INTERGENIC
2L	437171	2L_437171_SNP [dm3] 2L_437171_SNP [dm6]	T	C	2.891e^-4	0.993	INTRON ex
3L	2634092	3L_2634092_SNP [dm3] 3L_2634092_SNP [dm6]	G	T	2.891e^-4	0.993	INTRON MEP-1 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	9896471	3R_9896471_SNP [dm3] 3R_14070749_SNP [dm6]	A	T	2.901e^-4	0.993	INTRON foxo
2L	9372911	2L_9372911_SNP [dm3] 2L_9372911_SNP [dm6]	C	T	2.906e^-4	0.993	UTR_3_PRIME Shawl DOWNSTREAM Shawl INTRON CR43865	TF binding site mE1_TFBS_cad
3L	3406500	3L_3406500_SNP [dm3] 3L_3406500_SNP [dm6]	A	G	2.912e^-4	0.993	INTRON sty
3L	2280814	3L_2280814_SNP [dm3] 3L_2280814_SNP [dm6]	A	G	2.935e^-4	0.993	INTERGENIC
2L	12546775	2L_12546775_SNP [dm3] 2L_12546775_SNP [dm6]	C	T	2.939e^-4	0.993	UPSTREAM bun INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	796723	2L_796723_SNP [dm3] 2L_796723_SNP [dm6]	A	C	2.948e^-4	0.993	INTERGENIC
3L	1336093	3L_1336093_SNP [dm3] 3L_1336093_SNP [dm6]	A	G	2.950e^-4	0.993	UPSTREAM CG2211 INTRON l_3_02640	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	435921	2L_435921_SNP [dm3] 2L_435921_SNP [dm6]	G	A	2.951e^-4	0.993	INTRON ex	TF binding site mE1_TFBS_chinmo
X	3438201	X_3438201_SNP [dm3] X_3544168_SNP [dm6]	G	T	2.955e^-4	0.993	INTRON CG32791
2L	9833411	2L_9833411_SNP [dm3] 2L_9833411_SNP [dm6]	C	A	2.963e^-4	0.993	INTRON nAChRalpha6
X	3320795	X_3320795_SNP [dm3] X_3426762_SNP [dm6]	A	G	2.981e^-4	0.993	DOWNSTREAM tRNA:CR32493 INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	17134018	2R_17134018_SNP [dm3] 2R_21246513_SNP [dm6]	G	A	2.990e^-4	0.993	INTRON ASPP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	11948704	2L_11948704_SNP [dm3] 2L_11948704_SNP [dm6]	C	A	3.002e^-4	0.993	UTR_3_PRIME CG16964 DOWNSTREAM CG16964	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	1600531	3L_1600531_SNP [dm3] 3L_1600531_SNP [dm6]	T	C	3.003e^-4	0.993	UTR_3_PRIME CG13917 DOWNSTREAM CG12104 & 1 other
2L	7302955	2L_7302955_SNP [dm3] 2L_7302955_SNP [dm6]	C	T	3.018e^-4	0.993	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	1417642	3L_1417642_SNP [dm3] 3L_1417642_SNP [dm6]	C	T	3.020e^-4	0.993	SYNONYMOUS_CODING FucTD INTRON Ptp61F	TF binding site mE1_TFBS_chinmo
3L	18674919	3L_18674919_SNP [dm3] 3L_18681819_SNP [dm6]	C	T	3.022e^-4	0.993	UTR_5_PRIME Sgf11 UPSTREAM CG32202	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12166316	2L_12166316_SNP [dm3] 2L_12166316_SNP [dm6]	G	A	3.023e^-4	0.993	SYNONYMOUS_CODING ZnT33D UTR_3_PRIME ZnT33D INTRON CG31760
3L	2480098	3L_2480098_SNP [dm3] 3L_2480098_SNP [dm6]	G	T	3.028e^-4	0.993	INTRON CG45186	TF binding site BDTNP1_TFBS_twi
3L	13246220	3L_13246220_SNP [dm3] 3L_13253120_SNP [dm6]	C	G	3.034e^-4	0.993	INTRON caps	TF binding site mE1_TFBS_inv
3L	7217016	3L_7217016_SNP [dm3] 3L_7223916_SNP [dm6]	T	G	3.039e^-4	0.993	DOWNSTREAM CR45410 INTERGENIC
2R	11299449	2R_11299449_SNP [dm3] 2R_15411944_SNP [dm6]	T	A	3.059e^-4	0.993	INTRON CG43729
2R	977433	2R_977433_DEL [dm3] 2R_5089928_DEL [dm6]	ATTACAAACATT...	A	3.070e^-4	0.993	UPSTREAM CG3107 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk
X	6414862	X_6414862_SNP [dm3] X_6520829_SNP [dm6]	A	G	3.073e^-4	0.993	INTRON CG42340
2R	9777027	2R_9777027_SNP [dm3] 2R_13889522_SNP [dm6]	A	G	3.073e^-4	0.993	SYNONYMOUS_CODING shot INTRON shot
3R	21518603	3R_21518603_SNP [dm3] 3R_25692881_SNP [dm6]	C	G	3.079e^-4	0.993	INTERGENIC
3L	4488749	3L_4488749_SNP [dm3] 3L_4488749_SNP [dm6]	T	C	3.098e^-4	0.993	INTRON CG13722
X	18203332	X_18203332_SNP [dm3] X_18309299_SNP [dm6]	G	T	3.101e^-4	0.993	UPSTREAM os INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	10099817	X_10099817_SNP [dm3] X_10205784_SNP [dm6]	A	T	3.108e^-4	0.993	UTR_3_PRIME CG15309 DOWNSTREAM CR32690 & 1 other INTRON CR44894
2L	10380475	2L_10380475_SNP [dm3] 2L_10380475_SNP [dm6]	C	T	3.109e^-4	0.993	SYNONYMOUS_CODING gny DOWNSTREAM dpr19	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2R	20028423	2R_20028423_SNP [dm3] 2R_24140900_SNP [dm6]	G	C	3.119e^-4	0.993	INTRON Dat
2R	4902601	2R_4902601_SNP [dm3] 2R_9015096_SNP [dm6]	G	A	3.138e^-4	0.993	INTRON CG13744
X	17686601	X_17686601_SNP [dm3] X_17792568_SNP [dm6]	G	T	3.140e^-4	0.993	INTRON OdsH
3L	4630919	3L_4630919_SNP [dm3] 3L_4630919_SNP [dm6]	G	C	3.141e^-4	0.993	INTRON axo
2L	2675942	2L_2675942_SNP [dm3] 2L_2675942_SNP [dm6]	G	T	3.146e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_cad
3L	2479410	3L_2479410_SNP [dm3] 3L_2479410_SNP [dm6]	A	G	3.154e^-4	0.993	UPSTREAM Cyp4d20 INTRON CG45186
2L	14080706	2L_14080706_SNP [dm3] 2L_14080706_SNP [dm6]	G	C	3.156e^-4	0.993	SYNONYMOUS_CODING nAChRalpha5
2L	12422920	2L_12422920_SNP [dm3] 2L_12422920_SNP [dm6]	A	G	3.164e^-4	0.993	INTRON vir-1	TF binding site BDTNP1_TFBS_z
2R	9121523	2R_9121523_SNP [dm3] 2R_13234018_SNP [dm6]	C	G	3.172e^-4	0.993	NON_SYNONYMOUS_CODING CG4670	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	7766763	2L_7766763_SNP [dm3] 2L_7766763_SNP [dm6]	G	A	3.177e^-4	0.993	UPSTREAM CG7191 DOWNSTREAM CG7196 INTERGENIC
X	8716329	X_8716329_SNP [dm3] X_8822296_SNP [dm6]	G	A	3.199e^-4	0.993	INTERGENIC
3L	11391433	3L_11391433_SNP [dm3] 3L_11398333_SNP [dm6]	A	T	3.200e^-4	0.993	DOWNSTREAM CG44362 INTERGENIC
2L	22033049	2L_22033049_SNP [dm3] 2L_22033049_SNP [dm6]	T	G	3.208e^-4	0.993	EXON CR45335	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	2177765	3L_2177765_SNP [dm3] 3L_2177765_SNP [dm6]	T	C	3.211e^-4	0.993	INTERGENIC
3R	19321297	3R_19321297_SNP [dm3] 3R_23495575_SNP [dm6]	A	G	3.216e^-4	0.993	INTERGENIC
2L	13334691	2L_13334691_SNP [dm3] 2L_13334691_SNP [dm6]	A	G	3.225e^-4	0.993	INTERGENIC
3R	11423704	3R_11423704_SNP [dm3] 3R_15597982_SNP [dm6]	G	T	3.228e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	14051494	2L_14051494_SNP [dm3] 2L_14051494_SNP [dm6]	C	T	3.233e^-4	0.993	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19611880	2L_19611880_SNP [dm3] 2L_19611880_SNP [dm6]	A	G	3.237e^-4	0.993	INTRON Lar
X	9666279	X_9666279_SNP [dm3] X_9772246_SNP [dm6]	C	T	3.243e^-4	0.993	INTERGENIC
3L	17049149	3L_17049149_SNP [dm3] 3L_17056049_SNP [dm6]	T	C	3.245e^-4	0.993	DOWNSTREAM rogdi INTRON CG7724
3R	24265097	3R_24265097_SNP [dm3] 3R_28439375_SNP [dm6]	C	T	3.245e^-4	0.993	INTRON beat-VI
2R	9755036	2R_9755036_SNP [dm3] 2R_13867531_SNP [dm6]	T	A	3.250e^-4	0.993	INTRON shot
2R	13151544	2R_13151544_SNP [dm3] 2R_17264039_SNP [dm6]	G	A	3.253e^-4	0.993	INTRON mbl	TF binding site mE1_TFBS_Trl
3L	16627913	3L_16627913_SNP [dm3] 3L_16634813_SNP [dm6]	G	A	3.266e^-4	0.993	INTRON Abl
3R	7066913	3R_7066913_SNP [dm3] 3R_11241191_SNP [dm6]	G	A	3.268e^-4	0.993	UTR_5_PRIME scpr-A UPSTREAM scpr-B
2R	14612216	2R_14612216_SNP [dm3] 2R_18724711_SNP [dm6]	T	C	3.269e^-4	0.993	INTRON Hs3st-A
X	9561289	X_9561289_DEL [dm3] X_9667256_DEL [dm6]	TCT	T	3.278e^-4	0.993	UTR_3_PRIME nej
2L	3633741	2L_3633741_SNP [dm3] 2L_3633741_SNP [dm6]	A	G	3.279e^-4	0.993	INTRON for	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	14988281	2R_14988281_SNP [dm3] 2R_19100776_SNP [dm6]	C	T	3.281e^-4	0.993	INTRON 5-HT1A
2R	5384618	2R_5384618_SNP [dm3] 2R_9497113_SNP [dm6]	A	C	3.293e^-4	0.993	INTRON Wnt2	TF binding site mE1_TFBS_chinmo
3R	23989160	3R_23989160_DEL [dm3] 3R_28163438_DEL [dm6]	TCTGGGGAAAGGCG...	C	3.295e^-4	0.993	INTRON CG34354
3L	2320517	3L_2320517_SNP [dm3] 3L_2320517_SNP [dm6]	T	C	3.305e^-4	0.993	UPSTREAM CR45426 INTERGENIC
2R	16471467	2R_16471467_SNP [dm3] 2R_20583962_SNP [dm6]	A	G	3.306e^-4	0.993	UPSTREAM qsm & 2 others DOWNSTREAM mir-312 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
3L	18675190	3L_18675190_SNP [dm3] 3L_18682090_SNP [dm6]	G	T	3.307e^-4	0.993	UPSTREAM CG32202 & 1 other DOWNSTREAM Chmp1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14451056	2R_14451056_SNP [dm3] 2R_18563551_SNP [dm6]	G	T	3.308e^-4	0.993	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11421314	3R_11421314_DEL [dm3] 3R_15595592_DEL [dm6]	AACC	A	3.309e^-4	0.993	INTERGENIC
2L	10806606	2L_10806606_SNP [dm3] 2L_10806606_SNP [dm6]	T	A	3.313e^-4	0.993	SYNONYMOUS_CODING Nos UTR_3_PRIME Nos	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2921488	3L_2921488_SNP [dm3] 3L_2921488_SNP [dm6]	T	C	3.322e^-4	0.993	INTRON Shab
3L	5423261	3L_5423261_SNP [dm3] 3L_5430161_SNP [dm6]	C	A	3.326e^-4	0.993	INTRON CG34391
X	9666282	X_9666282_SNP [dm3] X_9772249_SNP [dm6]	C	T	3.334e^-4	0.993	INTERGENIC
3L	16627830	3L_16627830_SNP [dm3] 3L_16634730_SNP [dm6]	C	T	3.350e^-4	0.993	INTRON Abl
3L	2377466	3L_2377466_SNP [dm3] 3L_2377466_SNP [dm6]	A	C	3.353e^-4	0.993	UTR_5_PRIME CG15877 UPSTREAM CG45186 DOWNSTREAM CG9004	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	9666898	X_9666898_SNP [dm3] X_9772865_SNP [dm6]	C	T	3.359e^-4	0.993	INTERGENIC
3L	7216994	3L_7216994_SNP [dm3] 3L_7223894_SNP [dm6]	G	A	3.362e^-4	0.993	DOWNSTREAM CR45410 EXON CR45410
3L	5872989	3L_5872989_SNP [dm3] 3L_5879889_SNP [dm6]	G	C	3.375e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4470733	2R_4470733_SNP [dm3] 2R_8583228_SNP [dm6]	C	G	3.379e^-4	0.993	INTRON CG42326
2L	11867294	2L_11867294_SNP [dm3] 2L_11867294_SNP [dm6]	A	C	3.383e^-4	0.993	INTRON Pde1c
3L	2480196	3L_2480196_SNP [dm3] 3L_2480196_SNP [dm6]	C	T	3.385e^-4	0.993	INTRON CG45186	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20909684	3R_20909684_SNP [dm3] 3R_25083962_SNP [dm6]	T	C	3.386e^-4	0.993	SYNONYMOUS_CODING fd96Ca	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	13698962	2L_13698962_SNP [dm3] 2L_13698962_SNP [dm6]	C	T	3.399e^-4	0.993	INTRON CG31814	TF binding site mE1_TFBS_sbb
2L	12930632	2L_12930632_INS [dm3] 2L_12930632_INS [dm6]	A	ACAATTGTA	3.404e^-4	0.993	UPSTREAM CR44183 DOWNSTREAM ACXE INTERGENIC
3L	1334719	3L_1334719_SNP [dm3] 3L_1334719_SNP [dm6]	C	T	3.424e^-4	0.993	UTR_5_PRIME CG2211 UPSTREAM l_3_02640 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	26041443	3R_26041443_SNP [dm3] 3R_30215721_SNP [dm6]	A	G	3.428e^-4	0.993	UPSTREAM CecC INTERGENIC
2L	9393432	2L_9393432_SNP [dm3] 2L_9393432_SNP [dm6]	T	C	3.435e^-4	0.993	INTRON Shawl
3R	20257362	3R_20257362_SNP [dm3] 3R_24431640_SNP [dm6]	A	G	3.441e^-4	0.993	INTRON nAChRalpha1
2L	9326713	2L_9326713_SNP [dm3] 2L_9326713_SNP [dm6]	C	A	3.445e^-4	0.993	UPSTREAM CR45457 EXON CR45456	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	4478417	3L_4478417_SNP [dm3] 3L_4478417_SNP [dm6]	T	A	3.445e^-4	0.993	INTERGENIC
2R	14661005	2R_14661005_SNP [dm3] 2R_18773500_SNP [dm6]	C	T	3.457e^-4	0.993	SYNONYMOUS_CODING Mctp
X	12445231	X_12445231_SNP [dm3] X_12551198_SNP [dm6]	A	C	3.457e^-4	0.993	INTRON CG43921
3L	4478183	3L_4478183_SNP [dm3] 3L_4478183_SNP [dm6]	A	G	3.458e^-4	0.993	INTERGENIC
2L	8311191	2L_8311191_SNP [dm3] 2L_8311191_SNP [dm6]	A	G	3.466e^-4	0.993	UTR_5_PRIME CG7810 UPSTREAM CG7806	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3L	2603103	3L_2603103_SNP [dm3] 3L_2603103_SNP [dm6]	C	T	3.481e^-4	0.993	SYNONYMOUS_CODING Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9399312	2L_9399312_SNP [dm3] 2L_9399312_SNP [dm6]	C	A	3.487e^-4	0.993	INTRON Shawl
3L	2610387	3L_2610387_SNP [dm3] 3L_2610387_SNP [dm6]	A	G	3.488e^-4	0.993	UTR_3_PRIME Pxn INTRON Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21925620	3R_21925620_SNP [dm3] 3R_26099898_SNP [dm6]	T	G	3.492e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	11581667	2L_11581667_SNP [dm3] 2L_11581667_SNP [dm6]	C	A	3.495e^-4	0.993	UPSTREAM kek2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	10789206	3L_10789206_SNP [dm3] 3L_10796106_SNP [dm6]	G	A	3.502e^-4	0.993	DOWNSTREAM CR44546 INTERGENIC
X	2292086	X_2292086_SNP [dm3] X_2398053_SNP [dm6]	A	G	3.504e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	17771839	2R_17771839_DEL [dm3] 2R_21884334_DEL [dm6]	GT	G	3.515e^-4	0.993	INTRON Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24660208	3R_24660208_SNP [dm3] 3R_28834486_SNP [dm6]	G	A	3.526e^-4	0.993	SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_chinmo
2L	1026127	2L_1026127_SNP [dm3] 2L_1026127_SNP [dm6]	C	A	3.535e^-4	0.993	UTR_3_PRIME CG4375 INTRON IA-2
2L	21976889	2L_21976889_SNP [dm3] 2L_21976889_SNP [dm6]	G	C	3.538e^-4	0.993	INTERGENIC
X	8990191	X_8990191_SNP [dm3] X_9096158_SNP [dm6]	G	A	3.542e^-4	0.993	INTRON CG7766
3L	2529286	3L_2529286_DEL [dm3] 3L_2529286_DEL [dm6]	AA	A	3.547e^-4	0.993	INTRON Spn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7710534	2L_7710534_SNP [dm3] 2L_7710534_SNP [dm6]	T	G	3.551e^-4	0.993	UTR_3_PRIME Tep3 UPSTREAM Ntl & 2 others	TF binding site mE1_TFBS_cad
2L	665520	2L_665520_SNP [dm3] 2L_665520_SNP [dm6]	G	A	3.556e^-4	0.993	INTRON ds	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	22402423	3R_22402423_DEL [dm3] 3R_26576701_DEL [dm6]	AGAGTTAATGAA...	A	3.556e^-4	0.993	UTR_3_PRIME scrib INTRON scrib
3L	10628637	3L_10628637_SNP [dm3] 3L_10635537_SNP [dm6]	A	G	3.559e^-4	0.993	SYNONYMOUS_CODING E_z_ DOWNSTREAM CG34001
3L	2230414	3L_2230414_SNP [dm3] 3L_2230414_SNP [dm6]	T	C	3.562e^-4	0.993	NON_SYNONYMOUS_CODING Oseg2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2529139	3L_2529139_SNP [dm3] 3L_2529139_SNP [dm6]	G	A	3.571e^-4	0.993	INTRON Spn
3R	24278346	3R_24278346_SNP [dm3] 3R_28452624_SNP [dm6]	C	T	3.572e^-4	0.993	INTRON beat-VI
3L	7406531	3L_7406531_SNP [dm3] 3L_7413431_SNP [dm6]	G	A	3.581e^-4	0.993	INTERGENIC
2R	11398500	2R_11398500_SNP [dm3] 2R_15510995_SNP [dm6]	A	G	3.586e^-4	0.993	UPSTREAM GalNAc-T1 INTERGENIC
3R	15013369	3R_15013369_SNP [dm3] 3R_19187647_SNP [dm6]	A	T	3.604e^-4	0.993	INTRON CG31475
2L	10084973	2L_10084973_DEL [dm3] 2L_10084973_DEL [dm6]	TCT	T	3.608e^-4	0.993	INTRON CG44153
2L	9553799	2L_9553799_SNP [dm3] 2L_9553799_SNP [dm6]	A	T	3.614e^-4	0.993	SPLICE_SITE_REGION jp INTRON jp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	23600643	3R_23600643_SNP [dm3] 3R_27774921_SNP [dm6]	G	A	3.615e^-4	0.993	INTRON CG34353
3R	7296069	3R_7296069_SNP [dm3] 3R_11470347_SNP [dm6]	C	A	3.625e^-4	0.993	INTERGENIC
3L	8964442	3L_8964442_SNP [dm3] 3L_8971342_SNP [dm6]	G	T	3.629e^-4	0.993	UTR_3_PRIME CG5026 DOWNSTREAM pix
2L	8289770	2L_8289770_SNP [dm3] 2L_8289770_SNP [dm6]	A	G	3.633e^-4	0.993	UPSTREAM tRNA:K5:29A INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	11030770	3R_11030770_SNP [dm3] 3R_15205048_SNP [dm6]	G	A	3.634e^-4	0.993	INTRON Spn88Ea
X	14492314	X_14492314_SNP [dm3] X_14598281_SNP [dm6]	C	A	3.635e^-4	0.993	INTRON CG9413
2L	6859205	2L_6859205_SNP [dm3] 2L_6859205_SNP [dm6]	T	A	3.636e^-4	0.993	SYNONYMOUS_CODING l_2_k09022	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	13646597	2L_13646597_DEL [dm3] 2L_13646597_DEL [dm6]	AC	A	3.642e^-4	0.993	INTERGENIC
3L	21773020	3L_21773020_SNP [dm3] 3L_21779920_SNP [dm6]	T	A	3.650e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	8412878	2L_8412878_SNP [dm3] 2L_8412878_SNP [dm6]	T	A	3.651e^-4	0.993	UTR_3_PRIME CG13398
3L	6464293	3L_6464293_SNP [dm3] 3L_6471193_SNP [dm6]	C	T	3.652e^-4	0.993	INTRON CG42747
2R	19425782	2R_19425782_SNP [dm3] 2R_23538259_SNP [dm6]	T	C	3.654e^-4	0.993	UTR_5_PRIME bw DOWNSTREAM ppk3	TF binding site mE1_TFBS_chinmo
3R	18157915	3R_18157915_SNP [dm3] 3R_22332193_SNP [dm6]	G	T	3.673e^-4	0.993	NON_SYNONYMOUS_CODING CG13862 DOWNSTREAM CG33721 & 1 other	TF binding site mE1_TFBS_inv
3R	16289871	3R_16289871_SNP [dm3] 3R_20464149_SNP [dm6]	A	C	3.674e^-4	0.993	INTRON Gfrl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	14661605	2R_14661605_INS [dm3] 2R_18774100_INS [dm6]	A	ACACA	3.677e^-4	0.993	UTR_3_PRIME Mctp
3L	2180898	3L_2180898_SNP [dm3] 3L_2180898_SNP [dm6]	A	C	3.678e^-4	0.993	INTERGENIC
X	21898238	X_21898238_SNP [dm3] X_22496402_SNP [dm6]	C	T	3.682e^-4	0.993	SYNONYMOUS_CODING l_1_G0196
3R	24284578	3R_24284578_SNP [dm3] 3R_28458856_SNP [dm6]	G	C	3.682e^-4	0.993	INTRON beat-VI
3R	24287187	3R_24287187_SNP [dm3] 3R_28461465_SNP [dm6]	C	T	3.682e^-4	0.993	INTRON beat-VI
2R	5384647	2R_5384647_SNP [dm3] 2R_9497142_SNP [dm6]	G	A	3.684e^-4	0.993	INTRON Wnt2	TF binding site mE1_TFBS_chinmo
2L	466537	2L_466537_SNP [dm3] 2L_466537_SNP [dm6]	C	T	3.687e^-4	0.993	INTRON CG4297
2L	11785804	2L_11785804_SNP [dm3] 2L_11785804_SNP [dm6]	A	G	3.699e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	26006780	3R_26006780_SNP [dm3] 3R_30181058_SNP [dm6]	T	A	3.702e^-4	0.993	UTR_3_PRIME Bet5 DOWNSTREAM CG15530
3R	25372527	3R_25372527_DEL [dm3] 3R_29546805_DEL [dm6]	AGTTCTGTTGAAAGCCAAAA...	A	3.702e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5848416	3L_5848416_SNP [dm3] 3L_5855316_SNP [dm6]	G	A	3.705e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	13334714	2L_13334714_SNP [dm3] 2L_13334714_SNP [dm6]	C	A	3.707e^-4	0.993	INTERGENIC
3L	2509566	3L_2509566_SNP [dm3] 3L_2509566_SNP [dm6]	C	T	3.707e^-4	0.993	INTRON Spn
3R	24272437	3R_24272437_SNP [dm3] 3R_28446715_SNP [dm6]	C	A	3.715e^-4	0.993	INTRON beat-VI
3L	2603169	3L_2603169_SNP [dm3] 3L_2603169_SNP [dm6]	C	T	3.717e^-4	0.993	SYNONYMOUS_CODING Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	2616076	2R_2616076_SNP [dm3] 2R_6728571_SNP [dm6]	A	G	3.721e^-4	0.993	INTRON l_2_01289
X	17686606	X_17686606_SNP [dm3] X_17792573_SNP [dm6]	A	C	3.722e^-4	0.993	INTRON OdsH
3R	24281080	3R_24281080_SNP [dm3] 3R_28455358_SNP [dm6]	A	T	3.727e^-4	0.993	INTRON beat-VI
2R	5384531	2R_5384531_SNP [dm3] 2R_9497026_SNP [dm6]	T	A	3.730e^-4	0.993	INTRON Wnt2	TF binding site mE1_TFBS_chinmo
2R	19640472	2R_19640472_SNP [dm3] 2R_23752949_SNP [dm6]	A	G	3.733e^-4	0.993	DOWNSTREAM CG9850 & 1 other INTRON CG5532	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	11299576	2R_11299576_MNP [dm3] 2R_15412071_MNP [dm6]	AAT	TCG	3.735e^-4	0.993	INTRON CG43729
3R	16290115	3R_16290115_SNP [dm3] 3R_20464393_SNP [dm6]	G	T	3.738e^-4	0.993	INTRON Gfrl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	13764594	2R_13764594_INS [dm3] 2R_17877089_INS [dm6]	G	GG	3.741e^-4	0.993	DOWNSTREAM CG30325 INTRON Elk
2R	977976	2R_977976_SNP [dm3] 2R_5090471_SNP [dm6]	G	A	3.746e^-4	0.993	UPSTREAM CG3107 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
X	7651622	X_7651622_SNP [dm3] X_7757589_SNP [dm6]	G	A	3.748e^-4	0.993	INTERGENIC
3L	11391457	3L_11391457_SNP [dm3] 3L_11398357_SNP [dm6]	T	A	3.751e^-4	0.993	DOWNSTREAM CG44362 INTERGENIC
3R	16895460	3R_16895460_SNP [dm3] 3R_21069738_SNP [dm6]	A	T	3.751e^-4	0.993	UTR_3_PRIME AnxB9 DOWNSTREAM r-l INTRON AnxB9	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
3R	24285387	3R_24285387_SNP [dm3] 3R_28459665_SNP [dm6]	G	A	3.753e^-4	0.993	INTRON beat-VI
3L	10038980	3L_10038980_SNP [dm3] 3L_10045880_SNP [dm6]	T	C	3.757e^-4	0.993	INTRON dpr6
3L	10039040	3L_10039040_SNP [dm3] 3L_10045940_SNP [dm6]	A	T	3.757e^-4	0.993	INTRON dpr6
3L	10039500	3L_10039500_SNP [dm3] 3L_10046400_SNP [dm6]	G	A	3.757e^-4	0.993	INTRON dpr6
3L	5140873	3L_5140873_SNP [dm3] 3L_5147773_SNP [dm6]	G	C	3.766e^-4	0.993	NON_SYNONYMOUS_CODING Aats-ala-m	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10039017	3L_10039017_SNP [dm3] 3L_10045917_SNP [dm6]	T	C	3.772e^-4	0.993	INTRON dpr6
2L	12469195	2L_12469195_SNP [dm3] 2L_12469195_SNP [dm6]	T	G	3.774e^-4	0.993	INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	3438185	X_3438185_SNP [dm3] X_3544152_SNP [dm6]	C	T	3.775e^-4	0.993	INTRON CG32791
2L	7138888	2L_7138888_SNP [dm3] 2L_7138888_SNP [dm6]	A	G	3.781e^-4	0.993	INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3R	11030744	3R_11030744_SNP [dm3] 3R_15205022_SNP [dm6]	G	C	3.790e^-4	0.993	INTRON Spn88Ea
2L	446480	2L_446480_SNP [dm3] 2L_446480_SNP [dm6]	G	A	3.804e^-4	0.993	SYNONYMOUS_CODING ex	TF binding site mE1_TFBS_chinmo
2R	20191365	2R_20191365_SNP [dm3] 2R_24303842_SNP [dm6]	C	T	3.807e^-4	0.993	INTERGENIC	regulatory region REDfly_CRMs
2R	19490937	2R_19490937_SNP [dm3] 2R_23603414_SNP [dm6]	T	G	3.812e^-4	0.993	SYNONYMOUS_CODING CG5398 UPSTREAM CG43209 DOWNSTREAM CG17664	TF binding site mE1_TFBS_chinmo
2L	12293350	2L_12293350_SNP [dm3] 2L_12293350_SNP [dm6]	G	A	3.818e^-4	0.993	INTRON aret	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4920903	3L_4920903_SNP [dm3] 3L_4920903_SNP [dm6]	T	G	3.827e^-4	0.993	DOWNSTREAM Rh50 INTERGENIC
X	4665721	X_4665721_SNP [dm3] X_4771688_SNP [dm6]	A	G	3.829e^-4	0.993	UPSTREAM Bteb2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2160456	3L_2160456_SNP [dm3] 3L_2160456_SNP [dm6]	A	T	3.848e^-4	0.993	SPLICE_SITE_REGION CG15822 INTRON CG15822
2L	1035584	2L_1035584_SNP [dm3] 2L_1035584_SNP [dm6]	T	G	3.849e^-4	0.993	INTRON IA-2
3R	8641198	3R_8641198_SNP [dm3] 3R_12815476_SNP [dm6]	A	G	3.849e^-4	0.993	INTRON CG31345
2R	10675262	2R_10675262_SNP [dm3] 2R_14787757_SNP [dm6]	T	C	3.850e^-4	0.993	INTRON kn
2L	13441663	2L_13441663_SNP [dm3] 2L_13441663_SNP [dm6]	C	T	3.851e^-4	0.993	INTRON CG42784 EXON CR45683
2L	14957311	2L_14957311_SNP [dm3] 2L_14957311_SNP [dm6]	A	G	3.856e^-4	0.993	INTRON CG42313
X	21471745	X_21471745_SNP [dm3] X_21600718_SNP [dm6]	A	G	3.869e^-4	0.993	UTR_3_PRIME CG14476	TF binding site mE1_TFBS_cad
3R	24276578	3R_24276578_DEL [dm3] 3R_28450856_DEL [dm6]	CACTTAGTGCTGG...	A	3.883e^-4	0.993	INTRON beat-VI	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	13477021	2L_13477021_SNP [dm3] 2L_13477021_SNP [dm6]	G	A	3.887e^-4	0.993	INTRON CG42784
3R	16289872	3R_16289872_SNP [dm3] 3R_20464150_SNP [dm6]	C	T	3.896e^-4	0.993	INTRON Gfrl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	2551391	3L_2551391_SNP [dm3] 3L_2551391_SNP [dm6]	T	C	3.908e^-4	0.993	INTRON Spn
2R	9405824	2R_9405824_SNP [dm3] 2R_13518319_SNP [dm6]	A	G	3.929e^-4	0.993	UTR_3_PRIME Vmat DOWNSTREAM CG13330 INTRON Vmat	TF binding site mE1_TFBS_cad
3L	2280267	3L_2280267_SNP [dm3] 3L_2280267_SNP [dm6]	C	A	3.953e^-4	0.993	INTERGENIC
3R	6511963	3R_6511963_SNP [dm3] 3R_10686241_SNP [dm6]	G	T	3.967e^-4	0.993	UPSTREAM Skeletor INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	20703453	3R_20703453_SNP [dm3] 3R_24877731_SNP [dm6]	A	C	3.968e^-4	0.993	NON_SYNONYMOUS_CODING CG31381 INTRON CG11089	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	5067686	3L_5067686_INS [dm3] 3L_5067686_INS [dm6]	G	GGG	3.970e^-4	0.993	INTRON Con
2R	6571006	2R_6571006_SNP [dm3] 2R_10683501_SNP [dm6]	A	T	3.973e^-4	0.993	INTRON stan	TF binding site BDTNP1_TFBS_dl
2R	15584321	2R_15584321_SNP [dm3] 2R_19696816_SNP [dm6]	T	G	3.977e^-4	0.993	UPSTREAM Obp56a EXON CR44506	regulatory region REDfly_CRMs
3L	10171648	3L_10171648_SNP [dm3] 3L_10178548_SNP [dm6]	G	C	3.986e^-4	0.993	INTRON dpr10
3L	14391884	3L_14391884_SNP [dm3] 3L_14398784_SNP [dm6]	C	A	3.988e^-4	0.993	INTERGENIC
3L	1620316	3L_1620316_SNP [dm3] 3L_1620316_SNP [dm6]	G	A	3.988e^-4	0.993	UTR_3_PRIME CG33230 INTRON ABCB7
X	22123698	X_22123698_SNP [dm3] X_22721862_SNP [dm6]	T	C	3.996e^-4	0.993	INTRON CR44997
2L	12166570	2L_12166570_SNP [dm3] 2L_12166570_SNP [dm6]	A	G	3.997e^-4	0.993	NON_SYNONYMOUS_CODING ZnT33D UTR_3_PRIME ZnT33D INTRON CG31760
3L	2881075	3L_2881075_SNP [dm3] 3L_2881075_SNP [dm6]	A	C	3.999e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	9874635	3R_9874635_SNP [dm3] 3R_14048913_SNP [dm6]	T	A	4.015e^-4	0.993	INTERGENIC
X	22116836	X_22116836_SNP [dm3] X_22715000_SNP [dm6]	C	G	4.019e^-4	0.993	INTRON CR44997
2L	10936922	2L_10936922_SNP [dm3] 2L_10936922_SNP [dm6]	A	G	4.028e^-4	0.993	UPSTREAM CG14072 INTRON dpr2 & 1 other
X	9666531	X_9666531_SNP [dm3] X_9772498_SNP [dm6]	G	A	4.029e^-4	0.993	INTERGENIC
2L	12482463	2L_12482463_INS [dm3] 2L_12482463_INS [dm6]	T	TG	4.032e^-4	0.993	INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	12351345	X_12351345_SNP [dm3] X_12457312_SNP [dm6]	A	G	4.033e^-4	0.993	SYNONYMOUS_CODING CG15731	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2R	2612918	2R_2612918_SNP [dm3] 2R_6725413_SNP [dm6]	T	G	4.038e^-4	0.993	INTRON l_2_01289	TF binding site mE1_TFBS_cad
2L	22198400	2L_22198400_SNP [dm3] 2L_22198400_SNP [dm6]	G	T	4.044e^-4	0.993	UTR_5_PRIME Ir40a UPSTREAM Ir40a INTRON Ir40a
3L	11029272	3L_11029272_SNP [dm3] 3L_11036172_SNP [dm6]	A	G	4.058e^-4	0.993	DOWNSTREAM CG43693 & 1 other INTERGENIC
2L	14202885	2L_14202885_SNP [dm3] 2L_14202885_SNP [dm6]	G	C	4.059e^-4	0.993	INTRON Dyrk2
3R	14448626	3R_14448626_SNP [dm3] 3R_18622904_SNP [dm6]	A	G	4.062e^-4	0.993	INTRON qin	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	15787705	2R_15787705_SNP [dm3] 2R_19900200_SNP [dm6]	C	T	4.066e^-4	0.993	INTERGENIC
X	3971644	X_3971644_SNP [dm3] X_4077611_SNP [dm6]	G	T	4.073e^-4	0.993	INTRON CG43689
3R	11130297	3R_11130297_SNP [dm3] 3R_15304575_SNP [dm6]	C	T	4.076e^-4	0.993	UTR_3_PRIME Tm1 DOWNSTREAM Tm1 INTRON Tm1
2L	15307532	2L_15307532_SNP [dm3] 2L_15307532_SNP [dm6]	G	T	4.077e^-4	0.993	INTERGENIC
2L	9326759	2L_9326759_SNP [dm3] 2L_9326759_SNP [dm6]	T	C	4.086e^-4	0.993	UPSTREAM CR45457 & 1 other DOWNSTREAM CR45456 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	22243413	2L_22243413_SNP [dm3] 2L_22243413_SNP [dm6]	G	T	4.092e^-4	0.993	UTR_3_PRIME CG3262	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	16756902	2L_16756902_SNP [dm3] 2L_16756902_SNP [dm6]	A	C	4.092e^-4	0.993	INTRON yellow-b
2L	9509979	2L_9509979_SNP [dm3] 2L_9509979_SNP [dm6]	G	T	4.110e^-4	0.993	INTRON CG33298
3L	8419413	3L_8419413_SNP [dm3] 3L_8426313_SNP [dm6]	A	G	4.115e^-4	0.993	INTRON Cbl
2L	796722	2L_796722_SNP [dm3] 2L_796722_SNP [dm6]	A	G	4.117e^-4	0.993	INTERGENIC
3L	2280167	3L_2280167_SNP [dm3] 3L_2280167_SNP [dm6]	C	T	4.118e^-4	0.993	INTERGENIC
3R	1898793	3R_1898793_SNP [dm3] 3R_6073071_SNP [dm6]	T	C	4.127e^-4	0.993	INTERGENIC
2R	14273925	2R_14273925_SNP [dm3] 2R_18386420_SNP [dm6]	G	C	4.131e^-4	0.993	UPSTREAM CG15067 & 1 other INTERGENIC
X	10041097	X_10041097_SNP [dm3] X_10147064_SNP [dm6]	T	C	4.132e^-4	0.993	INTRON CR44894 & 1 other
3L	11138134	3L_11138134_INS [dm3] 3L_11145034_INS [dm6]	T	TT	4.141e^-4	0.993	INTRON CG32082
X	22096175	X_22096175_SNP [dm3] X_22694339_SNP [dm6]	A	G	4.155e^-4	0.993	INTRON CR44997
2L	10937794	2L_10937794_SNP [dm3] 2L_10937794_SNP [dm6]	G	T	4.156e^-4	0.993	NON_SYNONYMOUS_CODING CG14072 INTRON dpr2
2R	9979289	2R_9979289_SNP [dm3] 2R_14091784_SNP [dm6]	T	G	4.167e^-4	0.993	UTR_3_PRIME CG42288 DOWNSTREAM CG42287 INTRON Prosap
2R	9486693	2R_9486693_INS [dm3] 2R_13599188_INS [dm6]	G	TC	4.167e^-4	0.993	DOWNSTREAM S-Lap5 INTERGENIC
3R	14486560	3R_14486560_SNP [dm3] 3R_18660838_SNP [dm6]	C	T	4.168e^-4	0.993	SYNONYMOUS_CODING CstF-64 DOWNSTREAM Cpsf73	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	314383	3L_314383_SNP [dm3] 3L_314383_SNP [dm6]	A	C	4.184e^-4	0.993	INTRON fwd
2R	11299456	2R_11299456_SNP [dm3] 2R_15411951_SNP [dm6]	A	G	4.189e^-4	0.993	INTRON CG43729
2L	14959829	2L_14959829_INS [dm3] 2L_14959829_INS [dm6]	A	ACA	4.205e^-4	0.993	INTRON CG42313
2R	11400424	2R_11400424_SNP [dm3] 2R_15512919_SNP [dm6]	A	C	4.209e^-4	0.993	UPSTREAM GalNAc-T1 INTRON GalNAc-T1
2L	2292196	2L_2292196_SNP [dm3] 2L_2292196_SNP [dm6]	C	T	4.211e^-4	0.993	INTERGENIC
3R	10318080	3R_10318080_SNP [dm3] 3R_14492358_SNP [dm6]	A	T	4.215e^-4	0.993	INTERGENIC
2L	437032	2L_437032_SNP [dm3] 2L_437032_SNP [dm6]	G	A	4.216e^-4	0.993	INTRON ex
2R	13639156	2R_13639156_SNP [dm3] 2R_17751651_SNP [dm6]	A	T	4.217e^-4	0.993	INTRON CG5002	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	9666222	X_9666222_SNP [dm3] X_9772189_SNP [dm6]	A	G	4.220e^-4	0.993	INTERGENIC
2L	936098	2L_936098_SNP [dm3] 2L_936098_SNP [dm6]	C	A	4.232e^-4	0.993	INTRON CG4341	TF binding site mE1_TFBS_Trl
2R	17771837	2R_17771837_SNP [dm3] 2R_21884332_SNP [dm6]	T	A	4.234e^-4	0.993	INTRON Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13778950	2L_13778950_SNP [dm3] 2L_13778950_SNP [dm6]	T	C	4.238e^-4	0.993	DOWNSTREAM CR31845 INTRON CG9008
2L	9183693	2L_9183693_SNP [dm3] 2L_9183693_SNP [dm6]	T	A	4.241e^-4	0.993	INTRON tai	TF binding site mE1_TFBS_HSA
3R	22402456	3R_22402456_SNP [dm3] 3R_26576734_SNP [dm6]	C	A	4.243e^-4	0.993	UTR_3_PRIME scrib INTRON scrib
3R	11526637	3R_11526637_SNP [dm3] 3R_15700915_SNP [dm6]	C	A	4.245e^-4	0.993	INTERGENIC
2L	17576085	2L_17576085_SNP [dm3] 2L_17576085_SNP [dm6]	T	A	4.250e^-4	0.993	UPSTREAM CR45358 INTERGENIC
3L	6392417	3L_6392417_SNP [dm3] 3L_6399317_SNP [dm6]	C	G	4.253e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	14934538	2R_14934538_SNP [dm3] 2R_19047033_SNP [dm6]	A	T	4.253e^-4	0.993	INTERGENIC
2R	10913626	2R_10913626_SNP [dm3] 2R_15026121_SNP [dm6]	C	A	4.255e^-4	0.993	DOWNSTREAM CR45256 INTRON hbs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12813480	3L_12813480_SNP [dm3] 3L_12820380_SNP [dm6]	A	C	4.257e^-4	0.993	NON_SYNONYMOUS_CODING CG42588
2L	9287029	2L_9287029_SNP [dm3] 2L_9287029_SNP [dm6]	T	C	4.269e^-4	0.993	INTRON Ggamma30A
2L	6804628	2L_6804628_SNP [dm3] 2L_6804628_SNP [dm6]	T	A	4.280e^-4	0.993	UTR_3_PRIME CG17375 DOWNSTREAM CG11236	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	18886040	X_18886040_SNP [dm3] X_18992007_SNP [dm6]	A	T	4.285e^-4	0.993	INTRON CG43759
3R	24253469	3R_24253469_SNP [dm3] 3R_28427747_SNP [dm6]	C	A	4.296e^-4	0.993	INTRON beat-VI
3L	291445	3L_291445_SNP [dm3] 3L_291445_SNP [dm6]	A	G	4.308e^-4	0.993	INTRON RhoGEF3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	14042293	3R_14042293_SNP [dm3] 3R_18216571_SNP [dm6]	T	G	4.314e^-4	0.993	SYNONYMOUS_CODING CG14314	TF binding site mE1_TFBS_cad
3L	4478619	3L_4478619_SNP [dm3] 3L_4478619_SNP [dm6]	A	G	4.318e^-4	0.993	INTERGENIC
2R	19299817	2R_19299817_SNP [dm3] 2R_23412294_SNP [dm6]	A	T	4.321e^-4	0.993	DOWNSTREAM CG9812 INTERGENIC
2R	17771824	2R_17771824_SNP [dm3] 2R_21884319_SNP [dm6]	A	G	4.330e^-4	0.993	INTRON Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24264404	3R_24264404_SNP [dm3] 3R_28438682_SNP [dm6]	T	C	4.347e^-4	0.993	INTRON beat-VI
3L	1336170	3L_1336170_SNP [dm3] 3L_1336170_SNP [dm6]	A	G	4.352e^-4	0.993	UPSTREAM CG2211 INTRON l_3_02640	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3951031	3L_3951031_SNP [dm3] 3L_3951031_SNP [dm6]	C	T	4.355e^-4	0.993	DOWNSTREAM CG14984 INTERGENIC
2L	7230586	2L_7230586_SNP [dm3] 2L_7230586_SNP [dm6]	T	G	4.363e^-4	0.993	SYNONYMOUS_CODING Ndae1
3R	14062749	3R_14062749_SNP [dm3] 3R_18237027_SNP [dm6]	A	G	4.364e^-4	0.993	SYNONYMOUS_CODING repo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	9286020	3L_9286020_SNP [dm3] 3L_9292920_SNP [dm6]	C	T	4.368e^-4	0.993	INTERGENIC
2L	12276081	2L_12276081_SNP [dm3] 2L_12276081_SNP [dm6]	G	T	4.376e^-4	0.993	INTRON aret
X	8772284	X_8772284_SNP [dm3] X_8878251_SNP [dm6]	G	T	4.377e^-4	0.993	INTRON Moe
2R	12739205	2R_12739205_SNP [dm3] 2R_16851700_SNP [dm6]	A	C	4.381e^-4	0.993	SYNONYMOUS_CODING IntS8	TF binding site mE1_TFBS_cad
3L	3209688	3L_3209688_SNP [dm3] 3L_3209688_SNP [dm6]	T	C	4.381e^-4	0.993	SYNONYMOUS_CODING gry UPSTREAM CG32270 & 1 other	TF binding site mE1_TFBS_chinmo
2L	21976857	2L_21976857_SNP [dm3] 2L_21976857_SNP [dm6]	C	T	4.387e^-4	0.993	INTERGENIC
2L	2315401	2L_2315401_SNP [dm3] 2L_2315401_SNP [dm6]	G	A	4.389e^-4	0.993	INTRON CG9967 & 1 other
2R	10911856	2R_10911856_INS [dm3] 2R_15024351_INS [dm6]	C	CGAAC	4.395e^-4	0.993	UPSTREAM CR45256 DOWNSTREAM Obp51a INTRON hbs
3L	3386561	3L_3386561_SNP [dm3] 3L_3386561_SNP [dm6]	C	A	4.397e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7524119	2L_7524119_SNP [dm3] 2L_7524119_SNP [dm6]	A	T	4.402e^-4	0.993	INTRON RapGAP1
2R	4902783	2R_4902783_SNP [dm3] 2R_9015278_SNP [dm6]	A	T	4.408e^-4	0.993	INTRON CG13744	TF binding site mE1_TFBS_cad
2L	1026953	2L_1026953_SNP [dm3] 2L_1026953_SNP [dm6]	T	A	4.409e^-4	0.993	UPSTREAM CG4375 INTRON IA-2
2L	10464595	2L_10464595_SNP [dm3] 2L_10464595_SNP [dm6]	A	T	4.411e^-4	0.993	INTRON RluA-1
2L	21976824	2L_21976824_DEL [dm3] 2L_21976824_DEL [dm6]	TT	T	4.412e^-4	0.993	INTERGENIC
3L	10403743	3L_10403743_SNP [dm3] 3L_10410643_SNP [dm6]	A	T	4.430e^-4	0.993	DOWNSTREAM CR44543 INTERGENIC	TF binding site mE1_TFBS_inv
3L	15155778	3L_15155778_SNP [dm3] 3L_15162678_SNP [dm6]	T	G	4.431e^-4	0.993	SYNONYMOUS_CODING CG7011 DOWNSTREAM CG6878	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_sens
3L	3029107	3L_3029107_SNP [dm3] 3L_3029107_SNP [dm6]	G	A	4.432e^-4	0.993	INTERGENIC
2L	995494	2L_995494_SNP [dm3] 2L_995494_SNP [dm6]	T	C	4.436e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1334660	3L_1334660_SNP [dm3] 3L_1334660_SNP [dm6]	A	C	4.442e^-4	0.993	UTR_5_PRIME CG2211 UPSTREAM l_3_02640 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4022342	2L_4022342_SNP [dm3] 2L_4022342_SNP [dm6]	G	A	4.442e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
X	6362268	X_6362268_DEL [dm3] X_6468235_DEL [dm6]	TGATGCAGCT	T	4.448e^-4	0.993	CODON_DELETION CG42340	TF binding site mE1_TFBS_chinmo
3L	2740425	3L_2740425_SNP [dm3] 3L_2740425_SNP [dm6]	A	G	4.452e^-4	0.993	DOWNSTREAM Acp62F INTRON Mrtf
3L	8419420	3L_8419420_SNP [dm3] 3L_8426320_SNP [dm6]	T	A	4.453e^-4	0.993	INTRON Cbl
2R	18149688	2R_18149688_SNP [dm3] 2R_22262183_SNP [dm6]	G	T	4.454e^-4	0.993	INTRON dve
2R	9130969	2R_9130969_SNP [dm3] 2R_13243464_SNP [dm6]	A	C	4.457e^-4	0.993	DOWNSTREAM CR45278 INTERGENIC
2R	16812437	2R_16812437_SNP [dm3] 2R_20924932_SNP [dm6]	C	A	4.466e^-4	0.993	INTRON Rx
2L	12407604	2L_12407604_SNP [dm3] 2L_12407604_SNP [dm6]	C	A	4.466e^-4	0.993	SYNONYMOUS_CODING vir-1
2L	2791957	2L_2791957_SNP [dm3] 2L_2791957_SNP [dm6]	G	A	4.483e^-4	0.993	INTRON Syt1
2R	9524148	2R_9524148_SNP [dm3] 2R_13636643_SNP [dm6]	C	G	4.485e^-4	0.993	INTRON fas
2L	10093110	2L_10093110_SNP [dm3] 2L_10093110_SNP [dm6]	G	A	4.485e^-4	0.993	UPSTREAM CG13133 & 1 other INTRON CG44153
2R	11303324	2R_11303324_SNP [dm3] 2R_15415819_SNP [dm6]	G	A	4.485e^-4	0.993	UTR_5_PRIME CG43729 INTRON CG43729	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	20617357	3L_20617357_SNP [dm3] 3L_20624257_SNP [dm6]	G	T	4.491e^-4	0.993	EXON CR44684	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10108261	X_10108261_DEL [dm3] X_10214228_DEL [dm6]	AA	A	4.495e^-4	0.993	UTR_3_PRIME l_1_G0230 DOWNSTREAM CG2962
3L	1616079	3L_1616079_SNP [dm3] 3L_1616079_SNP [dm6]	T	A	4.496e^-4	0.993	UPSTREAM CG12105 INTRON CG33791 & 1 other
2R	5384556	2R_5384556_SNP [dm3] 2R_9497051_SNP [dm6]	A	C	4.497e^-4	0.993	INTRON Wnt2	TF binding site mE1_TFBS_chinmo
X	5512883	X_5512883_SNP [dm3] X_5618850_SNP [dm6]	G	A	4.498e^-4	0.993	UPSTREAM RhoGAP5A DOWNSTREAM Mlc-c INTERGENIC
3L	2610389	3L_2610389_SNP [dm3] 3L_2610389_SNP [dm6]	T	G	4.499e^-4	0.993	UTR_3_PRIME Pxn INTRON Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11776360	2L_11776360_SNP [dm3] 2L_11776360_SNP [dm6]	A	C	4.504e^-4	0.993	INTERGENIC
2R	990180	2R_990180_SNP [dm3] 2R_5102675_SNP [dm6]	A	G	4.508e^-4	0.993	INTERGENIC	transposable element FlyBase
2L	14002639	2L_14002639_SNP [dm3] 2L_14002639_SNP [dm6]	G	T	4.509e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_sbb
2R	7385387	2R_7385387_DEL [dm3] 2R_11497882_DEL [dm6]	TT	T	4.517e^-4	0.993	INTRON inv
3L	21099046	3L_21099046_INS [dm3] 3L_21105946_INS [dm6]	T	TA	4.517e^-4	0.993	INTRON ko	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13263621	2L_13263621_SNP [dm3] 2L_13263621_SNP [dm6]	C	G	4.528e^-4	0.993	INTRON CG44085
3R	13720520	3R_13720520_SNP [dm3] 3R_17894798_SNP [dm6]	C	T	4.532e^-4	0.993	NON_SYNONYMOUS_CODING Rim INTRON Rim	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	13473948	X_13473948_SNP [dm3] X_13579915_SNP [dm6]	T	A	4.535e^-4	0.993	INTRON Tango13
X	9539454	X_9539454_SNP [dm3] X_9645421_SNP [dm6]	T	C	4.553e^-4	0.993	INTRON l_1_G0232	TF binding site BDTNP1_TFBS_twi
X	17716627	X_17716627_SNP [dm3] X_17822594_SNP [dm6]	T	G	4.560e^-4	0.993	INTRON Socs16D	TF binding site mE1_TFBS_cad
3R	10940261	3R_10940261_SNP [dm3] 3R_15114539_SNP [dm6]	T	A	4.561e^-4	0.993	INTRON CG42788
2L	19233521	2L_19233521_SNP [dm3] 2L_19233521_SNP [dm6]	C	T	4.567e^-4	0.993	INTERGENIC
2R	2667171	2R_2667171_SNP [dm3] 2R_6779666_SNP [dm6]	G	A	4.576e^-4	0.993	DOWNSTREAM Cyp6a2 INTRON Epac
3R	10927777	3R_10927777_SNP [dm3] 3R_15102055_SNP [dm6]	C	A	4.578e^-4	0.993	INTRON CG42788
3L	2180921	3L_2180921_SNP [dm3] 3L_2180921_SNP [dm6]	C	T	4.578e^-4	0.993	INTERGENIC
3L	3687421	3L_3687421_SNP [dm3] 3L_3687421_SNP [dm6]	A	G	4.580e^-4	0.993	INTERGENIC
X	4088065	X_4088065_SNP [dm3] X_4194032_SNP [dm6]	T	A	4.586e^-4	0.993	INTRON Fas2
2L	17037179	2L_17037179_DEL [dm3] 2L_17037179_DEL [dm6]	GCCA	G	4.607e^-4	0.993	INTERGENIC
X	2332091	X_2332091_SNP [dm3] X_2438058_SNP [dm6]	C	A	4.618e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11398544	2R_11398544_SNP [dm3] 2R_15511039_SNP [dm6]	G	A	4.619e^-4	0.993	UPSTREAM GalNAc-T1 INTERGENIC
3R	804511	3R_804511_SNP [dm3] 3R_4978789_SNP [dm6]	T	G	4.624e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	20030694	2R_20030694_DEL [dm3] 2R_24143171_DEL [dm6]	TTTTATAGAT	T	4.624e^-4	0.993	INTRON Dat
3R	13484423	3R_13484423_SNP [dm3] 3R_17658701_SNP [dm6]	G	A	4.635e^-4	0.993	UPSTREAM tRNA:CR31575 INTRON CG14322
2L	12941351	2L_12941351_SNP [dm3] 2L_12941351_SNP [dm6]	C	G	4.644e^-4	0.993	INTERGENIC
X	3022113	X_3022113_SNP [dm3] X_3128080_SNP [dm6]	T	A	4.646e^-4	0.993	UPSTREAM kirre INTRON kirre
X	10466939	X_10466939_SNP [dm3] X_10572906_SNP [dm6]	A	T	4.648e^-4	0.993	INTRON spri
2R	8808541	2R_8808541_SNP [dm3] 2R_12921036_SNP [dm6]	T	C	4.651e^-4	0.993	SYNONYMOUS_CODING NAT1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	10102730	X_10102730_SNP [dm3] X_10208697_SNP [dm6]	T	G	4.674e^-4	0.993	UPSTREAM CR44894 INTRON CG15309	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	9298444	2L_9298444_SNP [dm3] 2L_9298444_SNP [dm6]	C	T	4.674e^-4	0.993	UTR_3_PRIME Ggamma30A
3R	10927802	3R_10927802_SNP [dm3] 3R_15102080_SNP [dm6]	A	C	4.703e^-4	0.993	SPLICE_SITE_REGION CG42788 INTRON CG42788
3L	12678952	3L_12678952_MNP [dm3] 3L_12685852_MNP [dm6]	GCA	AAG	4.707e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	18779392	2R_18779392_SNP [dm3] 2R_22891869_SNP [dm6]	A	G	4.708e^-4	0.993	INTRON MED23
2R	11499798	2R_11499798_SNP [dm3] 2R_15612293_SNP [dm6]	C	T	4.709e^-4	0.993	INTERGENIC
2L	924213	2L_924213_SNP [dm3] 2L_924213_SNP [dm6]	G	A	4.710e^-4	0.993	INTRON CG4341	TF binding site mE1_TFBS_chinmo
2L	19318237	2L_19318237_SNP [dm3] 2L_19318237_SNP [dm6]	G	T	4.718e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_cad
X	2988311	X_2988311_SNP [dm3] X_3094278_SNP [dm6]	A	T	4.732e^-4	0.993	INTRON kirre	regulatory region REDfly_CRMs
X	8721263	X_8721263_SNP [dm3] X_8827230_SNP [dm6]	T	A	4.737e^-4	0.993	INTERGENIC
2R	12268184	2R_12268184_SNP [dm3] 2R_16380679_SNP [dm6]	C	T	4.738e^-4	0.993	NON_SYNONYMOUS_CODING CG43187 UPSTREAM CR45317 DOWNSTREAM CR45316
X	5410101	X_5410101_SNP [dm3] X_5516068_SNP [dm6]	C	T	4.741e^-4	0.993	UPSTREAM CG12730 DOWNSTREAM CR45518 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	6415000	X_6415000_SNP [dm3] X_6520967_SNP [dm6]	T	C	4.743e^-4	0.993	INTRON CG42340
3R	4465210	3R_4465210_SNP [dm3] 3R_8639488_SNP [dm6]	T	A	4.744e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	19299680	2R_19299680_SNP [dm3] 2R_23412157_SNP [dm6]	C	T	4.746e^-4	0.993	DOWNSTREAM CG9812 INTERGENIC
2L	6804615	2L_6804615_SNP [dm3] 2L_6804615_SNP [dm6]	A	C	4.747e^-4	0.993	UTR_3_PRIME CG17375 DOWNSTREAM CG17375 & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	10806498	2L_10806498_SNP [dm3] 2L_10806498_SNP [dm6]	A	G	4.748e^-4	0.993	SYNONYMOUS_CODING Nos UTR_3_PRIME Nos	TF binding site mE1_TFBS_chinmo
2L	7747988	2L_7747988_DEL [dm3] 2L_7747988_DEL [dm6]	GAAAGTTTAATGGTC...	G	4.749e^-4	0.993	DOWNSTREAM CG7211 INTERGENIC
3L	16451411	3L_16451411_SNP [dm3] 3L_16458311_SNP [dm6]	T	A	4.749e^-4	0.993	INTRON CG33158
3L	4365135	3L_4365135_SNP [dm3] 3L_4365135_SNP [dm6]	T	C	4.753e^-4	0.993	SYNONYMOUS_CODING mRpS6 UPSTREAM CG33514	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	3687454	3L_3687454_SNP [dm3] 3L_3687454_SNP [dm6]	A	G	4.757e^-4	0.993	INTERGENIC
3R	12921958	3R_12921958_SNP [dm3] 3R_17096236_SNP [dm6]	A	C	4.758e^-4	0.993	UPSTREAM cher INTRON cher
3L	4733681	3L_4733681_SNP [dm3] 3L_4733681_SNP [dm6]	T	C	4.761e^-4	0.993	INTRON RhoGEF64C
2R	10420442	2R_10420442_SNP [dm3] 2R_14532937_SNP [dm6]	G	A	4.763e^-4	0.993	INTRON ttv
3L	5372560	3L_5372560_SNP [dm3] 3L_5379460_SNP [dm6]	G	A	4.766e^-4	0.993	SYNONYMOUS_CODING Ir64a
X	3321799	X_3321799_INS [dm3] X_3427766_INS [dm6]	T	TATACT	4.772e^-4	0.993	UPSTREAM tRNA:CR32493 INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	925292	2L_925292_DEL [dm3] 2L_925292_DEL [dm6]	GGGGCTGTGC	G	4.773e^-4	0.993	INTRON CG4341
2R	1343755	2R_1343755_SNP [dm3] 2R_5456250_SNP [dm6]	A	G	4.775e^-4	0.993	DOWNSTREAM laccase2 INTERGENIC	transposable element FlyBase
3L	17180483	3L_17180483_SNP [dm3] 3L_17187383_SNP [dm6]	C	T	4.781e^-4	0.993	INTRON Rbp6
3L	1617295	3L_1617295_SNP [dm3] 3L_1617295_SNP [dm6]	G	A	4.784e^-4	0.993	SYNONYMOUS_CODING CG33791 UTR_3_PRIME CG18170 DOWNSTREAM CG13926
3R	8110533	3R_8110533_SNP [dm3] 3R_12284811_SNP [dm6]	G	A	4.787e^-4	0.993	INTRON svp
3L	15913616	3L_15913616_SNP [dm3] 3L_15920516_SNP [dm6]	T	A	4.792e^-4	0.993	INTRON sff	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
2L	4199948	2L_4199948_SNP [dm3] 2L_4199948_SNP [dm6]	G	T	4.802e^-4	0.993	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18897207	2R_18897207_SNP [dm3] 2R_23009684_SNP [dm6]	C	T	4.819e^-4	0.993	INTRON twi
2R	14993507	2R_14993507_SNP [dm3] 2R_19106002_SNP [dm6]	A	G	4.821e^-4	0.993	INTRON 5-HT1A
3L	10628661	3L_10628661_SNP [dm3] 3L_10635561_SNP [dm6]	C	T	4.830e^-4	0.993	SYNONYMOUS_CODING E_z_ DOWNSTREAM CG34001
3L	11130108	3L_11130108_SNP [dm3] 3L_11137008_SNP [dm6]	G	T	4.831e^-4	0.993	INTRON CG32082
3L	16866842	3L_16866842_MNP [dm3] 3L_16873742_MNP [dm6]	CTT	TAA	4.838e^-4	0.993	INTRON Lmpt
3L	2281168	3L_2281168_SNP [dm3] 3L_2281168_SNP [dm6]	A	T	4.851e^-4	0.993	INTERGENIC
3L	15155441	3L_15155441_SNP [dm3] 3L_15162341_SNP [dm6]	C	T	4.857e^-4	0.993	SYNONYMOUS_CODING CG6878 INTRON CG7011	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	20191561	2R_20191561_SNP [dm3] 2R_24304038_SNP [dm6]	C	G	4.862e^-4	0.993	INTERGENIC	regulatory region REDfly_CRMs
X	6696816	X_6696816_SNP [dm3] X_6802783_SNP [dm6]	C	G	4.875e^-4	0.993	UPSTREAM pod1 INTRON C3G	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_Trl
3L	2603421	3L_2603421_SNP [dm3] 3L_2603421_SNP [dm6]	C	T	4.876e^-4	0.993	SYNONYMOUS_CODING Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	1821530	3R_1821530_SNP [dm3] 3R_5995808_SNP [dm6]	T	C	4.899e^-4	0.993	EXON CR44928
X	10347018	X_10347018_SNP [dm3] X_10452985_SNP [dm6]	A	G	4.901e^-4	0.993	UPSTREAM CG32683 INTRON CG32683
3L	2602949	3L_2602949_SNP [dm3] 3L_2602949_SNP [dm6]	T	C	4.902e^-4	0.993	NON_SYNONYMOUS_CODING Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2280195	3L_2280195_SNP [dm3] 3L_2280195_SNP [dm6]	C	G	4.905e^-4	0.993	INTERGENIC
3L	13583356	3L_13583356_SNP [dm3] 3L_13590256_SNP [dm6]	C	T	4.929e^-4	0.993	INTRON bru-3
3L	2902926	3L_2902926_SNP [dm3] 3L_2902926_SNP [dm6]	C	T	4.931e^-4	0.993	INTRON Shab
3L	12813479	3L_12813479_SNP [dm3] 3L_12820379_SNP [dm6]	G	A	4.939e^-4	0.993	SYNONYMOUS_CODING CG42588
2R	17771766	2R_17771766_SNP [dm3] 2R_21884261_SNP [dm6]	G	A	4.940e^-4	0.993	INTRON Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2R	6928850	2R_6928850_SNP [dm3] 2R_11041345_SNP [dm6]	C	A	4.941e^-4	0.993	INTRON luna
2L	12226772	2L_12226772_SNP [dm3] 2L_12226772_SNP [dm6]	A	G	4.943e^-4	0.993	INTRON aret
3R	13484421	3R_13484421_SNP [dm3] 3R_17658699_SNP [dm6]	T	C	4.945e^-4	0.993	UPSTREAM tRNA:CR31575 INTRON CG14322
3L	2184080	3L_2184080_SNP [dm3] 3L_2184080_SNP [dm6]	A	G	4.946e^-4	0.993	INTERGENIC
3R	11030804	3R_11030804_SNP [dm3] 3R_15205082_SNP [dm6]	C	T	4.946e^-4	0.993	INTRON Spn88Ea
X	14022759	X_14022759_SNP [dm3] X_14128726_SNP [dm6]	T	C	4.962e^-4	0.993	INTERGENIC
2R	13528550	2R_13528550_SNP [dm3] 2R_17641045_SNP [dm6]	C	G	4.963e^-4	0.993	INTERGENIC
3R	10987215	3R_10987215_SNP [dm3] 3R_15161493_SNP [dm6]	A	G	4.967e^-4	0.993	INTRON Gyc88E	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	1647701	3L_1647701_SNP [dm3] 3L_1647701_SNP [dm6]	T	C	4.969e^-4	0.993	UPSTREAM Bro & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	5230155	X_5230155_INS [dm3] X_5336122_INS [dm6]	T	TAT	4.972e^-4	0.993	INTERGENIC
3L	6464308	3L_6464308_SNP [dm3] 3L_6471208_SNP [dm6]	G	A	4.973e^-4	0.993	INTRON CG42747
2R	10030480	2R_10030480_SNP [dm3] 2R_14142975_SNP [dm6]	G	T	4.976e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	11851748	3L_11851748_SNP [dm3] 3L_11858648_SNP [dm6]	A	G	4.978e^-4	0.993	INTRON CG44837
3R	24941534	3R_24941534_SNP [dm3] 3R_29115812_SNP [dm6]	C	A	4.979e^-4	0.993	SYNONYMOUS_CODING CG11876 UPSTREAM Atg14 DOWNSTREAM CG11876	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	2790072	X_2790072_SNP [dm3] X_2896039_SNP [dm6]	A	G	5.010e^-4	0.993	INTRON kirre
3R	24477682	3R_24477682_SNP [dm3] 3R_28651960_SNP [dm6]	T	C	5.011e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11693161	2R_11693161_SNP [dm3] 2R_15805656_SNP [dm6]	C	T	5.015e^-4	0.993	INTRON tun & 1 other
2R	14659034	2R_14659034_SNP [dm3] 2R_18771529_SNP [dm6]	T	C	5.017e^-4	0.993	UTR_5_PRIME Mctp INTRON Mctp
X	9666520	X_9666520_SNP [dm3] X_9772487_SNP [dm6]	C	A	5.017e^-4	0.993	INTERGENIC
2L	480521	2L_480521_SNP [dm3] 2L_480521_SNP [dm6]	C	T	5.036e^-4	0.993	UPSTREAM cbt INTRON ush	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	972134	2R_972134_SNP [dm3] 2R_5084629_SNP [dm6]	T	G	5.037e^-4	0.993	INTERGENIC
3L	3684231	3L_3684231_SNP [dm3] 3L_3684231_SNP [dm6]	C	A	5.040e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19318067	2L_19318067_SNP [dm3] 2L_19318067_SNP [dm6]	T	C	5.045e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_cad
2R	4470920	2R_4470920_SNP [dm3] 2R_8583415_SNP [dm6]	T	C	5.048e^-4	0.993	INTRON CG42326
2L	9949841	2L_9949841_SNP [dm3] 2L_9949841_SNP [dm6]	A	G	5.052e^-4	0.993	DOWNSTREAM mir-87 INTERGENIC	TF binding site mE1_TFBS_sens
3L	17180470	3L_17180470_INS [dm3] 3L_17187370_INS [dm6]	A	ATATTTGGA	5.056e^-4	0.993	INTRON Rbp6
2R	2666348	2R_2666348_SNP [dm3] 2R_6778843_SNP [dm6]	C	T	5.057e^-4	0.993	DOWNSTREAM Cyp6a2 INTRON Epac
X	8618737	X_8618737_SNP [dm3] X_8724704_SNP [dm6]	G	A	5.058e^-4	0.993	EXON CR43297
2R	17016688	2R_17016688_SNP [dm3] 2R_21129183_SNP [dm6]	C	T	5.066e^-4	0.993	SYNONYMOUS_CODING mago UPSTREAM CG4050 DOWNSTREAM Magi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	1332613	3L_1332613_SNP [dm3] 3L_1332613_SNP [dm6]	T	C	5.067e^-4	0.993	SYNONYMOUS_CODING msd5 DOWNSTREAM mtacp1 & 2 others
X	17007458	X_17007458_SNP [dm3] X_17113425_SNP [dm6]	T	A	5.074e^-4	0.993	INTRON CG5004
2R	2624989	2R_2624989_SNP [dm3] 2R_6737484_SNP [dm6]	G	A	5.077e^-4	0.993	INTRON l_2_01289
3L	15440588	3L_15440588_INS [dm3] 3L_15447488_INS [dm6]	A	AGATA	5.078e^-4	0.993	INTERGENIC
2R	11303369	2R_11303369_SNP [dm3] 2R_15415864_SNP [dm6]	A	G	5.086e^-4	0.993	UTR_5_PRIME CG43729 INTRON CG43729	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	7338238	3R_7338238_SNP [dm3] 3R_11512516_SNP [dm6]	T	C	5.090e^-4	0.993	INTERGENIC
X	9560882	X_9560882_SNP [dm3] X_9666849_SNP [dm6]	T	G	5.094e^-4	0.993	UTR_3_PRIME nej
2L	14251231	2L_14251231_SNP [dm3] 2L_14251231_SNP [dm6]	C	G	5.098e^-4	0.993	INTERGENIC
X	22132287	X_22132287_SNP [dm3] X_22730451_SNP [dm6]	G	T	5.100e^-4	0.993	INTRON CR44997	transposable element FlyBase
2L	15307779	2L_15307779_SNP [dm3] 2L_15307779_SNP [dm6]	G	A	5.101e^-4	0.993	INTERGENIC
X	3374846	X_3374846_SNP [dm3] X_3480813_SNP [dm6]	T	A	5.107e^-4	0.993	INTRON CR44999 & 1 other
3L	5952209	3L_5952209_SNP [dm3] 3L_5959109_SNP [dm6]	C	G	5.113e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	15155237	3L_15155237_SNP [dm3] 3L_15162137_SNP [dm6]	A	G	5.113e^-4	0.993	DOWNSTREAM Prp31 INTRON CG7011 & 1 other	TF binding site mE1_TFBS_sens
X	22116509	X_22116509_SNP [dm3] X_22714673_SNP [dm6]	G	A	5.118e^-4	0.993	INTRON CR44997	transposable element FlyBase
2L	13108667	2L_13108667_SNP [dm3] 2L_13108667_SNP [dm6]	T	C	5.119e^-4	0.993	INTRON CG5142
2R	2609744	2R_2609744_SNP [dm3] 2R_6722239_SNP [dm6]	G	A	5.120e^-4	0.993	SYNONYMOUS_CODING l_2_01289
2L	12546780	2L_12546780_SNP [dm3] 2L_12546780_SNP [dm6]	G	A	5.147e^-4	0.993	UPSTREAM bun INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	18202749	3R_18202749_SNP [dm3] 3R_22377027_SNP [dm6]	G	A	5.152e^-4	0.993	SYNONYMOUS_CODING CG18596	TF binding site mE1_TFBS_sens
3R	23844059	3R_23844059_SNP [dm3] 3R_28018337_SNP [dm6]	G	C	5.156e^-4	0.993	INTERGENIC
3L	3126366	3L_3126366_DEL [dm3] 3L_3126366_DEL [dm6]	GAAATCAACAAATG...	G	5.162e^-4	0.993	INTRON prominin-like	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11397658	2R_11397658_SNP [dm3] 2R_15510153_SNP [dm6]	G	T	5.163e^-4	0.993	INTERGENIC
2L	1493661	2L_1493661_SNP [dm3] 2L_1493661_SNP [dm6]	G	A	5.164e^-4	0.993	UTR_3_PRIME CG31928 UPSTREAM CG33128 DOWNSTREAM CG31928
2L	12576084	2L_12576084_SNP [dm3] 2L_12576084_SNP [dm6]	C	T	5.169e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14645941	3R_14645941_SNP [dm3] 3R_18820219_SNP [dm6]	T	A	5.170e^-4	0.993	INTRON CG18208
2L	2676224	2L_2676224_SNP [dm3] 2L_2676224_SNP [dm6]	T	C	5.173e^-4	0.993	INTERGENIC
2L	13778965	2L_13778965_SNP [dm3] 2L_13778965_SNP [dm6]	C	A	5.189e^-4	0.993	DOWNSTREAM CR31845 INTRON CG9008
3L	5203453	3L_5203453_SNP [dm3] 3L_5210353_SNP [dm6]	T	C	5.191e^-4	0.993	INTRON shep
2L	5296186	2L_5296186_SNP [dm3] 2L_5296186_SNP [dm6]	C	T	5.193e^-4	0.993	INTRON vri
2L	13046650	2L_13046650_SNP [dm3] 2L_13046650_SNP [dm6]	A	C	5.199e^-4	0.993	INTRON CG9932
3L	13620160	3L_13620160_SNP [dm3] 3L_13627060_SNP [dm6]	A	G	5.204e^-4	0.993	INTRON bru-3	TF binding site mE1_TFBS_chinmo
2L	5244841	2L_5244841_SNP [dm3] 2L_5244841_SNP [dm6]	A	T	5.208e^-4	0.993	UPSTREAM tkv DOWNSTREAM CR14033 INTRON tkv
X	3627777	X_3627777_SNP [dm3] X_3733744_SNP [dm6]	C	G	5.221e^-4	0.993	INTRON tlk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4881977	3L_4881977_SNP [dm3] 3L_4881977_SNP [dm6]	C	G	5.221e^-4	0.993	INTRON CG17150
3L	12812462	3L_12812462_SNP [dm3] 3L_12819362_SNP [dm6]	T	A	5.235e^-4	0.993	SYNONYMOUS_CODING CG42588	TF binding site mE1_TFBS_sens
2L	16477281	2L_16477281_SNP [dm3] 2L_16477281_SNP [dm6]	A	G	5.248e^-4	0.993	INTRON dac	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	2789759	X_2789759_SNP [dm3] X_2895726_SNP [dm6]	C	G	5.257e^-4	0.993	INTRON kirre
3R	18179275	3R_18179275_SNP [dm3] 3R_22353553_SNP [dm6]	T	G	5.264e^-4	0.993	INTRON rdhB
2L	10809651	2L_10809651_SNP [dm3] 2L_10809651_SNP [dm6]	C	A	5.281e^-4	0.993	INTRON Nos
2R	13136752	2R_13136752_SNP [dm3] 2R_17249247_SNP [dm6]	T	C	5.284e^-4	0.993	INTRON mbl
2R	14362307	2R_14362307_SNP [dm3] 2R_18474802_SNP [dm6]	C	T	5.286e^-4	0.993	INTRON CG30116
2L	8312105	2L_8312105_SNP [dm3] 2L_8312105_SNP [dm6]	A	G	5.290e^-4	0.993	UPSTREAM CG7810 INTRON CG7806	TF binding site mE1_TFBS_HSA
3R	10939401	3R_10939401_INS [dm3] 3R_15113679_INS [dm6]	T	AC	5.292e^-4	0.993	INTRON CG42788
2R	2666354	2R_2666354_SNP [dm3] 2R_6778849_SNP [dm6]	C	T	5.294e^-4	0.993	DOWNSTREAM Cyp6a2 INTRON Epac
3L	2954177	3L_2954177_SNP [dm3] 3L_2954177_SNP [dm6]	T	A	5.303e^-4	0.993	DOWNSTREAM Shab INTRON Shab
2L	3668137	2L_3668137_SNP [dm3] 2L_3668137_SNP [dm6]	T	C	5.305e^-4	0.993	SYNONYMOUS_CODING Sfp24Ba DOWNSTREAM CG42463 INTRON CG34340
X	3320827	X_3320827_SNP [dm3] X_3426794_SNP [dm6]	A	T	5.311e^-4	0.993	DOWNSTREAM tRNA:CR32493 INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	293746	3L_293746_SNP [dm3] 3L_293746_SNP [dm6]	C	A	5.312e^-4	0.993	INTRON RhoGEF3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	960797	2L_960797_SNP [dm3] 2L_960797_SNP [dm6]	C	A	5.318e^-4	0.993	INTERGENIC
X	9259350	X_9259350_SNP [dm3] X_9365317_SNP [dm6]	C	T	5.319e^-4	0.993	SYNONYMOUS_CODING mgl
3R	18162284	3R_18162284_SNP [dm3] 3R_22336562_SNP [dm6]	T	C	5.323e^-4	0.993	DOWNSTREAM CG5388 INTRON CG5388	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	9560892	X_9560892_SNP [dm3] X_9666859_SNP [dm6]	A	G	5.324e^-4	0.993	UTR_3_PRIME nej
2R	17125489	2R_17125489_SNP [dm3] 2R_21237984_SNP [dm6]	G	C	5.329e^-4	0.993	INTRON ASPP
2R	15674864	2R_15674864_INS [dm3] 2R_19787359_INS [dm6]	G	GGCTACACAATG...	5.330e^-4	0.993	EXON CR45231
2L	6260522	2L_6260522_SNP [dm3] 2L_6260522_SNP [dm6]	A	T	5.330e^-4	0.993	INTRON Ddr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2111329	2L_2111329_INS [dm3] 2L_2111329_INS [dm6]	A	AA	5.333e^-4	0.993	INTERGENIC
2L	16380266	2L_16380266_SNP [dm3] 2L_16380266_SNP [dm6]	T	C	5.342e^-4	0.993	INTERGENIC
2R	4950824	2R_4950824_SNP [dm3] 2R_9063319_SNP [dm6]	A	C	5.344e^-4	0.993	INTRON ana	regulatory region REDfly_CRMs
X	14330589	X_14330589_SNP [dm3] X_14436556_SNP [dm6]	G	C	5.375e^-4	0.993	INTRON dpr8
2R	2664977	2R_2664977_SNP [dm3] 2R_6777472_SNP [dm6]	G	A	5.378e^-4	0.993	UPSTREAM Epac INTRON Epac	TF binding site mE1_TFBS_cad
3L	2806287	3L_2806287_SNP [dm3] 3L_2806287_SNP [dm6]	T	C	5.387e^-4	0.993	INTRON CG43444	TF binding site mE1_TFBS_inv
3R	4916894	3R_4916894_SNP [dm3] 3R_9091172_SNP [dm6]	G	A	5.403e^-4	0.993	INTRON pum
2L	11251486	2L_11251486_SNP [dm3] 2L_11251486_SNP [dm6]	T	C	5.405e^-4	0.993	INTRON ab	TF binding site BDTNP1_TFBS_twi
3R	17146671	3R_17146671_SNP [dm3] 3R_21320949_SNP [dm6]	G	T	5.423e^-4	0.993	UTR_3_PRIME CG16791	TF binding site mE1_TFBS_cad
2R	3220085	2R_3220085_DEL [dm3] 2R_7332580_DEL [dm6]	AA	A	5.423e^-4	0.993	INTRON CR45129 & 1 other
3R	18593813	3R_18593813_SNP [dm3] 3R_22768091_SNP [dm6]	A	C	5.426e^-4	0.993	UPSTREAM CG13841 DOWNSTREAM CG43091 & 1 other INTRON Usp12-46 & 1 other
X	22124349	X_22124349_SNP [dm3] X_22722513_SNP [dm6]	G	A	5.433e^-4	0.993	INTRON CR44997	transposable element FlyBase
3L	15002022	3L_15002022_SNP [dm3] 3L_15008922_SNP [dm6]	G	A	5.434e^-4	0.993	INTRON Reck	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20953212	3R_20953212_SNP [dm3] 3R_25127490_SNP [dm6]	G	A	5.439e^-4	0.993	UPSTREAM Clbn & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	2608499	2R_2608499_SNP [dm3] 2R_6720994_SNP [dm6]	A	T	5.444e^-4	0.993	DOWNSTREAM l_2_01289 INTERGENIC
2R	8481747	2R_8481747_SNP [dm3] 2R_12594242_SNP [dm6]	C	T	5.447e^-4	0.993	UPSTREAM CR45279 DOWNSTREAM CR43909 INTRON Amph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	4052219	3L_4052219_SNP [dm3] 3L_4052219_SNP [dm6]	C	T	5.449e^-4	0.993	INTRON CG1136	TF binding site BDTNP1_TFBS_twi
3R	26178037	3R_26178037_DEL [dm3] 3R_30352315_DEL [dm6]	TCG	T	5.451e^-4	0.993	INTRON hdc
2L	960792	2L_960792_SNP [dm3] 2L_960792_SNP [dm6]	T	C	5.455e^-4	0.993	INTERGENIC
X	3130285	X_3130285_INS [dm3] X_3236252_INS [dm6]	C	CAAGTGGATTC...	5.458e^-4	0.993	UTR_3_PRIME CG14265 INTRON dnc
2R	19181174	2R_19181174_SNP [dm3] 2R_23293651_SNP [dm6]	C	T	5.465e^-4	0.993	INTERGENIC
3R	19655752	3R_19655752_SNP [dm3] 3R_23830030_SNP [dm6]	T	C	5.469e^-4	0.993	SYNONYMOUS_CODING CG34355
3R	5988341	3R_5988341_SNP [dm3] 3R_10162619_SNP [dm6]	A	T	5.481e^-4	0.993	INTRON Best1
3L	1334876	3L_1334876_SNP [dm3] 3L_1334876_SNP [dm6]	C	T	5.482e^-4	0.993	UTR_5_PRIME CG2211 UPSTREAM l_3_02640 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1093911	2L_1093911_SNP [dm3] 2L_1093911_SNP [dm6]	C	A	5.487e^-4	0.993	INTRON CG4629
3R	11486980	3R_11486980_DEL [dm3] 3R_15661258_DEL [dm6]	TT	T	5.491e^-4	0.993	INTERGENIC
3L	835141	3L_835141_SNP [dm3] 3L_835141_SNP [dm6]	G	A	5.498e^-4	0.993	SYNONYMOUS_CODING CG42553 UPSTREAM CG42554	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	9290951	3L_9290951_SNP [dm3] 3L_9297851_SNP [dm6]	T	G	5.502e^-4	0.993	INTERGENIC
2L	13952923	2L_13952923_SNP [dm3] 2L_13952923_SNP [dm6]	G	T	5.512e^-4	0.993	INTRON Ance-3
3R	10211808	3R_10211808_DEL [dm3] 3R_14386086_DEL [dm6]	ACACAGGGTTC...	A	5.523e^-4	0.993	INTERGENIC
2R	17163080	2R_17163080_SNP [dm3] 2R_21275575_SNP [dm6]	T	G	5.526e^-4	0.993	INTRON Rgk3
3L	21129400	3L_21129400_SNP [dm3] 3L_21136300_SNP [dm6]	T	C	5.545e^-4	0.993	START_GAINED CG10565 UTR_5_PRIME CG10565 UPSTREAM CG10565 DOWNSTREAM Ac78C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
2L	9672657	2L_9672657_SNP [dm3] 2L_9672657_SNP [dm6]	T	C	5.546e^-4	0.993	INTERGENIC

By genomic position
Variant impact
Gene name

mn_AlcoholSens_E1 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results