DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.376e^-10)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_P	6.6315	0.0363

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1844 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	1709446	X_1709446_SNP [dm3] X_1815413_SNP [dm6]	A	G	1.180e^-6	0.658	INTRON CG42666	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10118135	3L_10118135_SNP [dm3] 3L_10125035_SNP [dm6]	T	A	1.443e^-6	0.658	INTRON dpr6
3R	14925813	3R_14925813_SNP [dm3] 3R_19100091_SNP [dm6]	T	C	1.449e^-6	0.658	INTRON CG6040
3R	9599335	3R_9599335_SNP [dm3] 3R_13773613_SNP [dm6]	T	C	1.592e^-6	0.658	INTRON CG9297
3R	19822485	3R_19822485_SNP [dm3] 3R_23996763_SNP [dm6]	T	C	1.813e^-6	0.658	DOWNSTREAM CG33108 & 1 other INTRON CG33108 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1709178	X_1709178_SNP [dm3] X_1815145_SNP [dm6]	G	A	2.106e^-6	0.658	INTRON CG42666	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2955101	X_2955101_SNP [dm3] X_3061068_SNP [dm6]	T	C	2.785e^-6	0.66	INTRON kirre
X	1709512	X_1709512_SNP [dm3] X_1815479_SNP [dm6]	T	C	2.814e^-6	0.66	INTRON CG42666	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10453062	3L_10453062_SNP [dm3] 3L_10459962_SNP [dm6]	A	T	3.901e^-6	0.785	NON_SYNONYMOUS_CODING Gem3	TF binding site mE1_TFBS_sens
3L	20377237	3L_20377237_SNP [dm3] 3L_20384137_SNP [dm6]	C	A	4.473e^-6	0.785	UPSTREAM fbl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	1058604	2L_1058604_SNP [dm3] 2L_1058604_SNP [dm6]	G	A	5.226e^-6	0.785	INTRON S	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	13699192	2L_13699192_SNP [dm3] 2L_13699192_SNP [dm6]	A	G	5.687e^-6	0.785	INTRON CG31814	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	1709376	X_1709376_SNP [dm3] X_1815343_SNP [dm6]	C	T	5.970e^-6	0.785	INTRON CG42666	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1709546	X_1709546_SNP [dm3] X_1815513_SNP [dm6]	G	C	5.970e^-6	0.785	INTRON CG42666	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14770848	3R_14770848_SNP [dm3] 3R_18945126_SNP [dm6]	T	C	7.447e^-6	0.785	INTRON CG42613
2L	12479269	2L_12479269_INS [dm3] 2L_12479269_INS [dm6]	T	TGT	8.038e^-6	0.785	INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8110787	X_8110787_SNP [dm3] X_8216754_SNP [dm6]	G	T	8.322e^-6	0.785	UPSTREAM sdt INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	13699214	2L_13699214_SNP [dm3] 2L_13699214_SNP [dm6]	T	A	8.512e^-6	0.785	INTRON CG31814	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	13935733	X_13935733_INS [dm3] X_14041700_INS [dm6]	A	AA	9.228e^-6	0.785	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	13626838	2L_13626838_SNP [dm3] 2L_13626838_SNP [dm6]	C	T	9.232e^-6	0.785	INTRON kuz
3R	14031244	3R_14031244_SNP [dm3] 3R_18205522_SNP [dm6]	C	T	9.764e^-6	0.785	INTRON CG7985
3R	19959655	3R_19959655_SNP [dm3] 3R_24133933_SNP [dm6]	C	T	1.023e^-5	0.785	UPSTREAM Sec10 INTRON Tsc1
2L	13699196	2L_13699196_SNP [dm3] 2L_13699196_SNP [dm6]	T	A	1.071e^-5	0.785	INTRON CG31814	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	14031256	3R_14031256_SNP [dm3] 3R_18205534_SNP [dm6]	A	T	1.088e^-5	0.785	INTRON CG7985
2L	13732191	2L_13732191_SNP [dm3] 2L_13732191_SNP [dm6]	T	C	1.136e^-5	0.785	INTERGENIC
3L	8490274	3L_8490274_SNP [dm3] 3L_8497174_SNP [dm6]	C	A	1.216e^-5	0.785	INTRON CG43163	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	14031237	3R_14031237_SNP [dm3] 3R_18205515_SNP [dm6]	T	C	1.354e^-5	0.785	INTRON CG7985
2L	13732174	2L_13732174_SNP [dm3] 2L_13732174_SNP [dm6]	G	A	1.357e^-5	0.785	INTERGENIC
3R	14031264	3R_14031264_SNP [dm3] 3R_18205542_SNP [dm6]	G	T	1.448e^-5	0.785	INTRON CG7985
2L	4620416	2L_4620416_SNP [dm3] 2L_4620416_SNP [dm6]	A	T	1.501e^-5	0.785	EXON CR44609
X	8110760	X_8110760_SNP [dm3] X_8216727_SNP [dm6]	A	T	1.590e^-5	0.785	UPSTREAM sdt INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	8110784	X_8110784_INS [dm3] X_8216751_INS [dm6]	T	TATA	1.590e^-5	0.785	UPSTREAM sdt INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	8110786	X_8110786_SNP [dm3] X_8216753_SNP [dm6]	G	A	1.590e^-5	0.785	UPSTREAM sdt INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	14658582	2R_14658582_DEL [dm3] 2R_18771077_DEL [dm6]	AA	C	1.647e^-5	0.785	UPSTREAM Mctp DOWNSTREAM tRNA:CR30229 INTRON Mctp
X	11142838	X_11142838_SNP [dm3] X_11248805_SNP [dm6]	A	G	1.714e^-5	0.785	UTR_3_PRIME CG15198 INTRON CG44422
2R	17041946	2R_17041946_SNP [dm3] 2R_21154441_SNP [dm6]	A	G	1.726e^-5	0.785	INTRON CG30389	TF binding site mE1_TFBS_cad
2L	13732180	2L_13732180_SNP [dm3] 2L_13732180_SNP [dm6]	C	G	1.793e^-5	0.785	INTERGENIC
2R	13957755	2R_13957755_SNP [dm3] 2R_18070250_SNP [dm6]	C	A	1.820e^-5	0.785	INTRON CG34386
2R	16768742	2R_16768742_SNP [dm3] 2R_20881237_SNP [dm6]	C	T	1.884e^-5	0.785	INTRON Cib2
3R	14031055	3R_14031055_SNP [dm3] 3R_18205333_SNP [dm6]	G	A	1.891e^-5	0.785	INTRON CG7985
2L	19317959	2L_19317959_SNP [dm3] 2L_19317959_SNP [dm6]	G	T	1.903e^-5	0.785	INTERGENIC
2L	13732181	2L_13732181_SNP [dm3] 2L_13732181_SNP [dm6]	C	T	1.939e^-5	0.785	INTERGENIC
3R	14685904	3R_14685904_DEL [dm3] 3R_18860182_DEL [dm6]	ACTTTGACACTCTATTACTA...	A	1.952e^-5	0.785	INTERGENIC
2L	13726409	2L_13726409_SNP [dm3] 2L_13726409_SNP [dm6]	G	C	1.971e^-5	0.785	INTERGENIC
3L	20525999	3L_20525999_SNP [dm3] 3L_20532899_SNP [dm6]	G	A	2.019e^-5	0.785	UPSTREAM CG13250 INTRON Rcd2
3R	20471805	3R_20471805_SNP [dm3] 3R_24646083_SNP [dm6]	G	C	2.020e^-5	0.785	SYNONYMOUS_CODING puf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13143072	3R_13143072_SNP [dm3] 3R_17317350_SNP [dm6]	T	C	2.110e^-5	0.785	INTERGENIC
2L	15456044	2L_15456044_SNP [dm3] 2L_15456044_SNP [dm6]	T	A	2.116e^-5	0.785	INTERGENIC
2R	14656796	2R_14656796_SNP [dm3] 2R_18769291_SNP [dm6]	G	T	2.142e^-5	0.785	UPSTREAM tRNA:CR30229 INTRON Mctp
X	8110717	X_8110717_SNP [dm3] X_8216684_SNP [dm6]	G	A	2.142e^-5	0.785	UPSTREAM sdt INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	8110742	X_8110742_SNP [dm3] X_8216709_SNP [dm6]	T	C	2.142e^-5	0.785	UPSTREAM sdt INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	13732143	2L_13732143_SNP [dm3] 2L_13732143_SNP [dm6]	G	C	2.266e^-5	0.785	INTERGENIC
X	1943188	X_1943188_SNP [dm3] X_2049155_SNP [dm6]	G	C	2.282e^-5	0.785	UPSTREAM moody INTRON CG4313 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	8439655	3R_8439655_SNP [dm3] 3R_12613933_SNP [dm6]	C	A	2.288e^-5	0.785	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	10443848	3R_10443848_SNP [dm3] 3R_14618126_SNP [dm6]	C	A	2.301e^-5	0.785	UTR_3_PRIME CG14853 DOWNSTREAM put	TF binding site mE1_TFBS_cad
2L	13732188	2L_13732188_SNP [dm3] 2L_13732188_SNP [dm6]	A	G	2.368e^-5	0.793	INTERGENIC
3R	14770847	3R_14770847_SNP [dm3] 3R_18945125_SNP [dm6]	G	C	2.491e^-5	0.807	INTRON CG42613
2L	13732185	2L_13732185_SNP [dm3] 2L_13732185_SNP [dm6]	T	A	2.495e^-5	0.807	INTERGENIC
3R	26165107	3R_26165107_SNP [dm3] 3R_30339385_SNP [dm6]	G	T	2.564e^-5	0.815	INTRON hdc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1709584	X_1709584_SNP [dm3] X_1815551_SNP [dm6]	C	T	2.701e^-5	0.832	INTRON CG42666	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20388392	3L_20388392_SNP [dm3] 3L_20395292_SNP [dm6]	A	G	2.746e^-5	0.832	DOWNSTREAM CR45677 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	9599210	3R_9599210_SNP [dm3] 3R_13773488_SNP [dm6]	G	T	2.749e^-5	0.832	INTRON CG9297
X	3127319	X_3127319_SNP [dm3] X_3233286_SNP [dm6]	C	A	2.970e^-5	0.862	INTRON dnc
X	8110346	X_8110346_SNP [dm3] X_8216313_SNP [dm6]	T	C	3.084e^-5	0.862	UTR_5_PRIME sdt UPSTREAM sdt INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	13730702	2L_13730702_SNP [dm3] 2L_13730702_SNP [dm6]	T	A	3.085e^-5	0.862	INTERGENIC
X	17628812	X_17628812_SNP [dm3] X_17734779_SNP [dm6]	T	A	3.120e^-5	0.862	UTR_5_PRIME CG42684 INTRON CG42684	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	9578678	2R_9578678_SNP [dm3] 2R_13691173_SNP [dm6]	A	T	3.122e^-5	0.862	DOWNSTREAM CG6220 INTRON fas
3R	18683569	3R_18683569_DEL [dm3] 3R_22857847_DEL [dm6]	TTT	C	3.125e^-5	0.862	INTERGENIC
3R	19822711	3R_19822711_SNP [dm3] 3R_23996989_SNP [dm6]	A	G	3.416e^-5	0.92	UTR_3_PRIME LSm3 DOWNSTREAM CG33108 & 1 other INTRON CG33108	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	4620417	2L_4620417_SNP [dm3] 2L_4620417_SNP [dm6]	A	C	3.436e^-5	0.92	EXON CR44609
2L	13114562	2L_13114562_SNP [dm3] 2L_13114562_SNP [dm6]	T	C	3.524e^-5	0.92	INTERGENIC
2R	13046918	2R_13046918_SNP [dm3] 2R_17159413_SNP [dm6]	T	C	3.532e^-5	0.92	UPSTREAM CG30458 DOWNSTREAM CG30457 INTERGENIC
2L	13699220	2L_13699220_SNP [dm3] 2L_13699220_SNP [dm6]	C	A	3.658e^-5	0.924	INTRON CG31814	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	14067639	3L_14067639_SNP [dm3] 3L_14074539_SNP [dm6]	G	A	3.666e^-5	0.924	INTRON Pex1
2L	13342981	2L_13342981_SNP [dm3] 2L_13342981_SNP [dm6]	C	T	3.717e^-5	0.924	INTERGENIC
3L	10453082	3L_10453082_SNP [dm3] 3L_10459982_SNP [dm6]	C	A	3.767e^-5	0.924	NON_SYNONYMOUS_CODING Gem3	TF binding site mE1_TFBS_sens
2R	9644381	2R_9644381_SNP [dm3] 2R_13756876_SNP [dm6]	A	T	3.879e^-5	0.924	NON_SYNONYMOUS_CODING CG6280	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	22027833	3R_22027833_SNP [dm3] 3R_26202111_SNP [dm6]	C	G	3.963e^-5	0.924	INTRON CR44320
3R	14031189	3R_14031189_SNP [dm3] 3R_18205467_SNP [dm6]	C	T	4.099e^-5	0.924	INTRON CG7985
3R	14031096	3R_14031096_SNP [dm3] 3R_18205374_SNP [dm6]	A	T	4.102e^-5	0.924	INTRON CG7985
3R	10442198	3R_10442198_SNP [dm3] 3R_14616476_SNP [dm6]	C	A	4.201e^-5	0.924	INTRON CG14853
2L	19317992	2L_19317992_SNP [dm3] 2L_19317992_SNP [dm6]	T	C	4.220e^-5	0.924	INTERGENIC
2L	13640906	2L_13640906_SNP [dm3] 2L_13640906_SNP [dm6]	C	A	4.354e^-5	0.924	INTRON ics	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20226596	3R_20226596_SNP [dm3] 3R_24400874_SNP [dm6]	A	T	4.379e^-5	0.924	UTR_3_PRIME nAChRalpha1 DOWNSTREAM nAChRalpha1
3R	10442208	3R_10442208_INS [dm3] 3R_14616486_INS [dm6]	T	TGCTA	4.434e^-5	0.924	INTRON CG14853
3L	16902427	3L_16902427_SNP [dm3] 3L_16909327_SNP [dm6]	A	T	4.457e^-5	0.924	INTRON Lmpt
3R	14276534	3R_14276534_SNP [dm3] 3R_18450812_SNP [dm6]	A	G	4.484e^-5	0.924	UPSTREAM fru INTRON fru	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11719231	3R_11719231_DEL [dm3] 3R_15893509_DEL [dm6]	TTGCGAATATATAACCTTTG...	T	4.519e^-5	0.924	INTRON CG14877
2L	5447933	2L_5447933_SNP [dm3] 2L_5447933_SNP [dm6]	T	C	4.605e^-5	0.924	INTERGENIC
X	8109749	X_8109749_SNP [dm3] X_8215716_SNP [dm6]	G	A	4.674e^-5	0.924	UPSTREAM sdt INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	20457070	3L_20457070_SNP [dm3] 3L_20463970_SNP [dm6]	C	G	4.757e^-5	0.924	DOWNSTREAM CG42764 INTRON CG5195
2R	14658584	2R_14658584_INS [dm3] 2R_18771079_INS [dm6]	C	CC	4.771e^-5	0.924	UPSTREAM Mctp DOWNSTREAM tRNA:CR30229 INTRON Mctp
3R	10442235	3R_10442235_SNP [dm3] 3R_14616513_SNP [dm6]	C	T	4.795e^-5	0.924	INTRON CG14853
3R	16548282	3R_16548282_SNP [dm3] 3R_20722560_SNP [dm6]	G	A	4.863e^-5	0.924	INTERGENIC
X	1943062	X_1943062_SNP [dm3] X_2049029_SNP [dm6]	C	A	4.908e^-5	0.924	UPSTREAM moody INTRON CG4313 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	13732195	2L_13732195_SNP [dm3] 2L_13732195_SNP [dm6]	T	C	4.974e^-5	0.924	INTERGENIC
2R	17760166	2R_17760166_SNP [dm3] 2R_21872661_SNP [dm6]	A	T	4.980e^-5	0.924	UTR_5_PRIME Fili	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	11719230	3R_11719230_SNP [dm3] 3R_15893508_SNP [dm6]	A	G	4.984e^-5	0.924	INTRON CG14877
2L	13699168	2L_13699168_SNP [dm3] 2L_13699168_SNP [dm6]	C	G	5.000e^-5	0.924	INTRON CG31814	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	1709910	X_1709910_SNP [dm3] X_1815877_SNP [dm6]	G	T	5.066e^-5	0.924	INTRON CG42666	TF binding site mE1_TFBS_HSA
X	8109768	X_8109768_SNP [dm3] X_8215735_SNP [dm6]	G	A	5.191e^-5	0.924	UPSTREAM sdt INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	12555464	2R_12555464_SNP [dm3] 2R_16667959_SNP [dm6]	T	A	5.222e^-5	0.924	UPSTREAM Picot INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	8109816	X_8109816_INS [dm3] X_8215783_INS [dm6]	C	CCTTAATATC	5.262e^-5	0.924	UPSTREAM sdt INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	12484795	2L_12484795_SNP [dm3] 2L_12484795_SNP [dm6]	G	T	5.343e^-5	0.924	INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
X	1709124	X_1709124_SNP [dm3] X_1815091_SNP [dm6]	G	A	5.447e^-5	0.924	INTRON CG42666	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16004067	3L_16004067_SNP [dm3] 3L_16010967_SNP [dm6]	G	T	5.533e^-5	0.924	UPSTREAM mib1 INTRON mib1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
X	11143024	X_11143024_SNP [dm3] X_11248991_SNP [dm6]	T	C	5.589e^-5	0.924	DOWNSTREAM CG15198 INTRON CG44422
3R	19343558	3R_19343558_SNP [dm3] 3R_23517836_SNP [dm6]	T	C	5.600e^-5	0.924	INTRON Irk2
3R	26290209	3R_26290209_SNP [dm3] 3R_30464487_SNP [dm6]	G	T	5.718e^-5	0.924	INTRON CDase
X	8109801	X_8109801_SNP [dm3] X_8215768_SNP [dm6]	T	A	5.724e^-5	0.924	UPSTREAM sdt INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	5856666	X_5856666_SNP [dm3] X_5962633_SNP [dm6]	T	G	5.798e^-5	0.924	NON_SYNONYMOUS_CODING fs_1_M3	TF binding site mE1_TFBS_chinmo
2R	13956158	2R_13956158_SNP [dm3] 2R_18068653_SNP [dm6]	G	T	5.829e^-5	0.924	INTRON CG34386
3R	10342011	3R_10342011_SNP [dm3] 3R_14516289_SNP [dm6]	G	T	5.853e^-5	0.924	UPSTREAM CG34273 INTRON Pde6
3R	10341935	3R_10341935_SNP [dm3] 3R_14516213_SNP [dm6]	A	G	5.887e^-5	0.924	SYNONYMOUS_CODING Pde6 UPSTREAM CG34273
3R	3617968	3R_3617968_SNP [dm3] 3R_7792246_SNP [dm6]	A	T	5.958e^-5	0.924	NON_SYNONYMOUS_CODING CG10086	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14031225	3R_14031225_SNP [dm3] 3R_18205503_SNP [dm6]	C	T	5.992e^-5	0.924	INTRON CG7985
2R	17760164	2R_17760164_SNP [dm3] 2R_21872659_SNP [dm6]	G	A	6.009e^-5	0.924	UTR_5_PRIME Fili	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	20245290	3R_20245290_SNP [dm3] 3R_24419568_SNP [dm6]	C	T	6.114e^-5	0.924	INTRON nAChRalpha1
3R	9599208	3R_9599208_SNP [dm3] 3R_13773486_SNP [dm6]	A	T	6.114e^-5	0.924	INTRON CG9297
2L	17373884	2L_17373884_SNP [dm3] 2L_17373884_SNP [dm6]	T	C	6.135e^-5	0.924	SYNONYMOUS_CODING Lrch	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6944541	2L_6944541_SNP [dm3] 2L_6944541_SNP [dm6]	T	C	6.171e^-5	0.924	SYNONYMOUS_CODING CG10158 DOWNSTREAM ihog	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5158026	3L_5158026_SNP [dm3] 3L_5164926_SNP [dm6]	G	T	6.176e^-5	0.924	INTRON shep
3L	20375625	3L_20375625_SNP [dm3] 3L_20382525_SNP [dm6]	G	A	6.187e^-5	0.924	SYNONYMOUS_CODING CG5498 DOWNSTREAM RhoBTB	TF binding site BDTNP1_TFBS_dl
3L	7818498	3L_7818498_SNP [dm3] 3L_7825398_SNP [dm6]	G	A	6.226e^-5	0.924	INTRON Pdp1
3L	16004079	3L_16004079_INS [dm3] 3L_16010979_INS [dm6]	T	TT	6.236e^-5	0.924	UPSTREAM mib1 INTRON mib1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3L	398355	3L_398355_SNP [dm3] 3L_398355_SNP [dm6]	G	C	6.280e^-5	0.924	INTERGENIC	TF binding site mE1_TFBS_cad
2L	13640871	2L_13640871_SNP [dm3] 2L_13640871_SNP [dm6]	C	G	6.312e^-5	0.924	INTRON ics	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14654631	2R_14654631_SNP [dm3] 2R_18767126_SNP [dm6]	G	T	6.394e^-5	0.924	UTR_5_PRIME Mctp INTRON Mctp
3R	10439009	3R_10439009_SNP [dm3] 3R_14613287_SNP [dm6]	T	A	6.446e^-5	0.924	UPSTREAM CG14853 INTRON CG14853
2R	20975600	2R_20975600_SNP [dm3] 2R_25088077_SNP [dm6]	G	A	6.485e^-5	0.924	INTRON lov
2L	12268279	2L_12268279_SNP [dm3] 2L_12268279_SNP [dm6]	A	T	6.656e^-5	0.924	INTRON aret
2R	13790526	2R_13790526_SNP [dm3] 2R_17903021_SNP [dm6]	A	C	6.673e^-5	0.924	INTRON Elk
3R	14032362	3R_14032362_SNP [dm3] 3R_18206640_SNP [dm6]	T	C	6.685e^-5	0.924	INTRON CG7985
2L	13699246	2L_13699246_SNP [dm3] 2L_13699246_SNP [dm6]	G	T	6.689e^-5	0.924	INTRON CG31814	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17733384	2R_17733384_SNP [dm3] 2R_21845879_SNP [dm6]	A	T	6.771e^-5	0.924	INTERGENIC
3R	14031252	3R_14031252_SNP [dm3] 3R_18205530_SNP [dm6]	A	C	6.846e^-5	0.924	INTRON CG7985
2L	13732153	2L_13732153_SNP [dm3] 2L_13732153_SNP [dm6]	A	T	6.862e^-5	0.924	INTERGENIC
2L	13730708	2L_13730708_SNP [dm3] 2L_13730708_SNP [dm6]	C	T	6.908e^-5	0.924	INTERGENIC
2R	21015528	2R_21015528_SNP [dm3] 2R_25128005_SNP [dm6]	G	A	6.952e^-5	0.924	INTRON lov	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	5514705	3L_5514705_SNP [dm3] 3L_5521605_SNP [dm6]	C	G	7.011e^-5	0.924	INTRON Lkr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10442242	3R_10442242_SNP [dm3] 3R_14616520_SNP [dm6]	C	T	7.018e^-5	0.924	INTRON CG14853
2R	12647616	2R_12647616_SNP [dm3] 2R_16760111_SNP [dm6]	G	A	7.062e^-5	0.924	SYNONYMOUS_CODING unc-104	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12647658	2R_12647658_SNP [dm3] 2R_16760153_SNP [dm6]	C	T	7.062e^-5	0.924	SYNONYMOUS_CODING unc-104	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15960340	3L_15960340_SNP [dm3] 3L_15967240_SNP [dm6]	A	G	7.182e^-5	0.924	SYNONYMOUS_CODING l_3_72Ab UPSTREAM CG10516	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_sens
2R	12647565	2R_12647565_SNP [dm3] 2R_16760060_SNP [dm6]	T	C	7.230e^-5	0.924	SYNONYMOUS_CODING unc-104	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12647625	2R_12647625_SNP [dm3] 2R_16760120_SNP [dm6]	G	C	7.273e^-5	0.924	SYNONYMOUS_CODING unc-104	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	20985196	2R_20985196_SNP [dm3] 2R_25097673_SNP [dm6]	T	C	7.305e^-5	0.924	INTRON lov	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3264129	3L_3264129_SNP [dm3] 3L_3264129_SNP [dm6]	C	A	7.451e^-5	0.924	INTRON ckd
2L	1162744	2L_1162744_SNP [dm3] 2L_1162744_SNP [dm6]	C	T	7.481e^-5	0.924	INTRON CG5080	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13954181	2R_13954181_SNP [dm3] 2R_18066676_SNP [dm6]	C	T	7.578e^-5	0.924	INTRON CG34386
3L	20377268	3L_20377268_SNP [dm3] 3L_20384168_SNP [dm6]	T	G	7.616e^-5	0.924	UPSTREAM fbl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	11999635	3L_11999635_SNP [dm3] 3L_12006535_SNP [dm6]	A	T	7.694e^-5	0.924	SYNONYMOUS_CODING CG6928
3L	12678304	3L_12678304_SNP [dm3] 3L_12685204_SNP [dm6]	G	A	7.743e^-5	0.924	INTERGENIC
2R	14654632	2R_14654632_SNP [dm3] 2R_18767127_SNP [dm6]	A	G	7.816e^-5	0.924	UTR_5_PRIME Mctp INTRON Mctp
3R	23401798	3R_23401798_SNP [dm3] 3R_27576076_SNP [dm6]	G	A	7.842e^-5	0.924	INTRON wdb
3R	14031229	3R_14031229_SNP [dm3] 3R_18205507_SNP [dm6]	G	A	7.869e^-5	0.924	INTRON CG7985
2R	19313562	2R_19313562_SNP [dm3] 2R_23426039_SNP [dm6]	A	G	7.870e^-5	0.924	UPSTREAM CG9815 INTRON CG9815	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	13732139	2L_13732139_SNP [dm3] 2L_13732139_SNP [dm6]	T	A	7.893e^-5	0.924	INTERGENIC
X	19759012	X_19759012_SNP [dm3] X_19864979_SNP [dm6]	C	T	7.969e^-5	0.924	NON_SYNONYMOUS_CODING CG15618 SYNONYMOUS_CODING CG15618	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	8161896	3L_8161896_SNP [dm3] 3L_8168796_SNP [dm6]	G	A	8.025e^-5	0.924	INTERGENIC
2L	13743190	2L_13743190_SNP [dm3] 2L_13743190_SNP [dm6]	A	C	8.037e^-5	0.924	INTERGENIC
2L	14502734	2L_14502734_SNP [dm3] 2L_14502734_SNP [dm6]	T	C	8.135e^-5	0.924	INTERGENIC
2L	7061197	2L_7061197_SNP [dm3] 2L_7061197_SNP [dm6]	G	A	8.175e^-5	0.924	NON_SYNONYMOUS_CODING Mnn1 UPSTREAM CG31907
3R	25278525	3R_25278525_DEL [dm3] 3R_29452803_DEL [dm6]	CCAACACTAGCAC...	C	8.187e^-5	0.924	INTRON Ptp99A	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1950351	2L_1950351_SNP [dm3] 2L_1950351_SNP [dm6]	T	C	8.216e^-5	0.924	UTR_3_PRIME erm
3L	16903791	3L_16903791_SNP [dm3] 3L_16910691_SNP [dm6]	C	T	8.249e^-5	0.924	UPSTREAM Lmpt INTRON Lmpt
2L	13114668	2L_13114668_SNP [dm3] 2L_13114668_SNP [dm6]	G	C	8.297e^-5	0.924	INTERGENIC
3L	13507416	3L_13507416_SNP [dm3] 3L_13514316_SNP [dm6]	C	T	8.332e^-5	0.924	SYNONYMOUS_CODING Liprin-beta	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2L	13699231	2L_13699231_SNP [dm3] 2L_13699231_SNP [dm6]	A	T	8.356e^-5	0.924	INTRON CG31814	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	10435169	3R_10435169_SNP [dm3] 3R_14609447_SNP [dm6]	T	C	8.437e^-5	0.924	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	18306672	3L_18306672_SNP [dm3] 3L_18313572_SNP [dm6]	A	T	8.515e^-5	0.924	INTERGENIC
3L	17748652	3L_17748652_SNP [dm3] 3L_17755552_SNP [dm6]	C	A	8.570e^-5	0.924	NON_SYNONYMOUS_CODING Msi INTRON Adgf-A
3R	16730995	3R_16730995_SNP [dm3] 3R_20905273_SNP [dm6]	G	A	8.571e^-5	0.924	SYNONYMOUS_CODING TotX INTRON CG5621
3L	20522129	3L_20522129_SNP [dm3] 3L_20529029_SNP [dm6]	C	T	8.649e^-5	0.924	NON_SYNONYMOUS_CODING Rcd2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12566141	3L_12566141_SNP [dm3] 3L_12573041_SNP [dm6]	C	A	8.876e^-5	0.924	UPSTREAM sowah INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26093784	3R_26093784_DEL [dm3] 3R_30268062_DEL [dm6]	CT	C	8.966e^-5	0.924	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	20399166	3L_20399166_SNP [dm3] 3L_20406066_SNP [dm6]	A	T	8.981e^-5	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2L	15456213	2L_15456213_SNP [dm3] 2L_15456213_SNP [dm6]	G	A	8.990e^-5	0.924	INTERGENIC
2R	13956161	2R_13956161_SNP [dm3] 2R_18068656_SNP [dm6]	G	T	8.998e^-5	0.924	INTRON CG34386
X	1946652	X_1946652_SNP [dm3] X_2052619_SNP [dm6]	G	A	9.222e^-5	0.924	UPSTREAM CG4313 INTRON CG4313	TF binding site mE1_TFBS_cad
2L	13640826	2L_13640826_SNP [dm3] 2L_13640826_SNP [dm6]	C	T	9.312e^-5	0.924	INTRON ics	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23857034	3R_23857034_SNP [dm3] 3R_28031312_SNP [dm6]	A	C	9.332e^-5	0.924	NON_SYNONYMOUS_CODING CG34362
2R	19813985	2R_19813985_SNP [dm3] 2R_23926462_SNP [dm6]	G	A	9.345e^-5	0.924	SYNONYMOUS_CODING CG2812 UTR_3_PRIME Ca-P60A DOWNSTREAM Ca-P60A	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	15130333	3R_15130333_SNP [dm3] 3R_19304611_SNP [dm6]	T	C	9.407e^-5	0.924	UTR_3_PRIME Dl
3R	20382739	3R_20382739_DEL [dm3] 3R_24557017_DEL [dm6]	CC	C	9.483e^-5	0.924	UPSTREAM snRNA:U6:96Ac DOWNSTREAM snRNA:U6:96Aa & 3 others INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
X	13462356	X_13462356_SNP [dm3] X_13568323_SNP [dm6]	A	C	9.514e^-5	0.924	INTRON Tango13
3R	10445608	3R_10445608_SNP [dm3] 3R_14619886_SNP [dm6]	T	G	9.544e^-5	0.924	UTR_3_PRIME put DOWNSTREAM CG14853 & 1 other	TF binding site mE1_TFBS_kn
2R	19974833	2R_19974833_SNP [dm3] 2R_24087310_SNP [dm6]	T	A	9.591e^-5	0.924	INTRON snama	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	20399506	3L_20399506_SNP [dm3] 3L_20406406_SNP [dm6]	A	G	9.593e^-5	0.924	DOWNSTREAM CG13248 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3R	20184437	3R_20184437_SNP [dm3] 3R_24358715_SNP [dm6]	T	C	9.594e^-5	0.924	SYNONYMOUS_CODING CG18528 UPSTREAM Golgin84	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18284457	2R_18284457_SNP [dm3] 2R_22396952_SNP [dm6]	A	G	9.707e^-5	0.924	INTRON babos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	11947370	3L_11947370_INS [dm3] 3L_11954270_INS [dm6]	A	ATACAGTTCA	9.764e^-5	0.924	UPSTREAM obst-G INTRON CG7248
3L	16004055	3L_16004055_SNP [dm3] 3L_16010955_SNP [dm6]	G	A	9.774e^-5	0.924	UPSTREAM mib1 INTRON mib1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2R	9653951	2R_9653951_SNP [dm3] 2R_13766446_SNP [dm6]	T	A	9.792e^-5	0.924	INTERGENIC
X	19599284	X_19599284_SNP [dm3] X_19705251_SNP [dm6]	G	C	9.821e^-5	0.924	SYNONYMOUS_CODING CG14230 UPSTREAM CG14232	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	1945355	X_1945355_SNP [dm3] X_2051322_SNP [dm6]	G	A	9.898e^-5	0.924	INTRON CG4313	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20471793	3R_20471793_SNP [dm3] 3R_24646071_SNP [dm6]	A	C	9.970e^-5	0.924	SYNONYMOUS_CODING puf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2868260	3L_2868260_SNP [dm3] 3L_2868260_SNP [dm6]	C	A	1.002e^-4	0.924	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
X	8110768	X_8110768_SNP [dm3] X_8216735_SNP [dm6]	T	A	1.003e^-4	0.924	UPSTREAM sdt INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	3447912	3L_3447912_SNP [dm3] 3L_3447912_SNP [dm6]	A	C	1.003e^-4	0.924	INTRON eIF5B
2R	6444961	2R_6444961_SNP [dm3] 2R_10557456_SNP [dm6]	A	T	1.006e^-4	0.924	UPSTREAM psq INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	2955196	X_2955196_SNP [dm3] X_3061163_SNP [dm6]	G	A	1.007e^-4	0.924	INTRON kirre
3L	17625849	3L_17625849_SNP [dm3] 3L_17632749_SNP [dm6]	A	C	1.016e^-4	0.924	UPSTREAM CG7497 DOWNSTREAM CR44567 & 1 other INTERGENIC
2L	13699247	2L_13699247_SNP [dm3] 2L_13699247_SNP [dm6]	C	A	1.018e^-4	0.924	INTRON CG31814	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	5184658	3L_5184658_SNP [dm3] 3L_5191558_SNP [dm6]	G	A	1.020e^-4	0.924	INTRON shep
3L	17625862	3L_17625862_SNP [dm3] 3L_17632762_SNP [dm6]	T	C	1.036e^-4	0.924	UPSTREAM CG7497 DOWNSTREAM CR44567 & 1 other INTERGENIC
2L	1060556	2L_1060556_SNP [dm3] 2L_1060556_SNP [dm6]	C	T	1.041e^-4	0.924	INTRON S
X	4896345	X_4896345_SNP [dm3] X_5002312_SNP [dm6]	T	A	1.047e^-4	0.924	INTRON CR44833	regulatory region REDfly_CRMs
3L	20494874	3L_20494874_SNP [dm3] 3L_20501774_SNP [dm6]	A	G	1.050e^-4	0.924	DOWNSTREAM CG18281 INTRON CG32425	transposable element FlyBase
2R	19413027	2R_19413027_SNP [dm3] 2R_23525504_SNP [dm6]	A	G	1.053e^-4	0.924	SYNONYMOUS_CODING mi	TF binding site mE1_TFBS_sens
2L	13733455	2L_13733455_SNP [dm3] 2L_13733455_SNP [dm6]	G	C	1.054e^-4	0.924	INTERGENIC
3L	17675258	3L_17675258_SNP [dm3] 3L_17682158_SNP [dm6]	C	T	1.054e^-4	0.924	INTRON CG34251
3R	24623954	3R_24623954_SNP [dm3] 3R_28798232_SNP [dm6]	G	C	1.057e^-4	0.924	INTERGENIC
3R	8731180	3R_8731180_SNP [dm3] 3R_12905458_SNP [dm6]	T	A	1.070e^-4	0.924	INTERGENIC
2R	21140130	2R_21140130_SNP [dm3] 2R_25252607_SNP [dm6]	T	C	1.073e^-4	0.924	UPSTREAM CG30428 INTRON CG9380 & 1 other	transposable element FlyBase
2L	13776219	2L_13776219_SNP [dm3] 2L_13776219_SNP [dm6]	A	T	1.074e^-4	0.924	UPSTREAM CR31845 INTRON CG9008
X	1943171	X_1943171_SNP [dm3] X_2049138_SNP [dm6]	C	A	1.076e^-4	0.924	UPSTREAM moody INTRON CG4313 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	18163995	3R_18163995_SNP [dm3] 3R_22338273_SNP [dm6]	G	T	1.080e^-4	0.924	INTRON CG5388	TF binding site mE1_TFBS_Trl
2L	13732127	2L_13732127_SNP [dm3] 2L_13732127_SNP [dm6]	T	C	1.081e^-4	0.924	INTERGENIC
3L	10453107	3L_10453107_SNP [dm3] 3L_10460007_SNP [dm6]	C	T	1.084e^-4	0.924	NON_SYNONYMOUS_CODING Gem3	TF binding site mE1_TFBS_sens
2R	17347739	2R_17347739_SNP [dm3] 2R_21460234_SNP [dm6]	G	T	1.091e^-4	0.926	INTRON Sdc
X	1708327	X_1708327_SNP [dm3] X_1814294_SNP [dm6]	C	G	1.102e^-4	0.927	INTRON CG42666	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	10050362	2L_10050362_SNP [dm3] 2L_10050362_SNP [dm6]	T	C	1.106e^-4	0.927	SYNONYMOUS_CODING CG33301 UPSTREAM CR44874	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14815324	2L_14815324_SNP [dm3] 2L_14815324_SNP [dm6]	T	G	1.112e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4631069	3L_4631069_SNP [dm3] 3L_4631069_SNP [dm6]	C	T	1.116e^-4	0.927	INTRON axo
2R	12801899	2R_12801899_SNP [dm3] 2R_16914394_SNP [dm6]	A	T	1.133e^-4	0.927	INTERGENIC
3R	22756973	3R_22756973_SNP [dm3] 3R_26931251_SNP [dm6]	C	T	1.143e^-4	0.927	INTRON sda
X	8108506	X_8108506_SNP [dm3] X_8214473_SNP [dm6]	T	C	1.144e^-4	0.927	INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	13733554	2L_13733554_SNP [dm3] 2L_13733554_SNP [dm6]	A	C	1.150e^-4	0.927	INTERGENIC
3L	18693862	3L_18693862_SNP [dm3] 3L_18700762_SNP [dm6]	C	A	1.152e^-4	0.927	INTERGENIC
3R	19189351	3R_19189351_SNP [dm3] 3R_23363629_SNP [dm6]	T	C	1.163e^-4	0.927	UPSTREAM CG4408 INTERGENIC
2L	13732150	2L_13732150_SNP [dm3] 2L_13732150_SNP [dm6]	C	T	1.167e^-4	0.927	INTERGENIC
2R	16457869	2R_16457869_SNP [dm3] 2R_20570364_SNP [dm6]	G	A	1.179e^-4	0.927	INTRON qsm	TF binding site BDTNP1_TFBS_prd
X	4248694	X_4248694_SNP [dm3] X_4354661_SNP [dm6]	T	A	1.179e^-4	0.927	INTRON norpA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4282459	3R_4282459_DEL [dm3] 3R_8456737_DEL [dm6]	TAT	T	1.190e^-4	0.927	INTRON CG45263
3L	8161913	3L_8161913_SNP [dm3] 3L_8168813_SNP [dm6]	A	T	1.197e^-4	0.927	INTERGENIC
2L	18595778	2L_18595778_SNP [dm3] 2L_18595778_SNP [dm6]	C	T	1.198e^-4	0.927	DOWNSTREAM amos & 1 other INTERGENIC	regulatory region REDfly_CRMs
2R	18439055	2R_18439055_SNP [dm3] 2R_22551550_SNP [dm6]	T	C	1.199e^-4	0.927	SYNONYMOUS_CODING CG6018 INTRON px	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	17701666	3R_17701666_SNP [dm3] 3R_21875944_SNP [dm6]	A	T	1.201e^-4	0.927	INTRON CG6656
3L	4635988	3L_4635988_SNP [dm3] 3L_4635988_SNP [dm6]	A	G	1.202e^-4	0.927	DOWNSTREAM axo INTRON axo	TF binding site mE1_TFBS_hkb
2R	8528000	2R_8528000_INS [dm3] 2R_12640495_INS [dm6]	C	CC	1.210e^-4	0.927	UTR_3_PRIME Iswi DOWNSTREAM CG8785	TF binding site mE1_TFBS_cad
X	8473377	X_8473377_SNP [dm3] X_8579344_SNP [dm6]	T	C	1.227e^-4	0.927	INTRON CG12065
2R	17911071	2R_17911071_DEL [dm3] 2R_22023566_DEL [dm6]	CT	C	1.228e^-4	0.927	INTRON CG34370
2R	17911074	2R_17911074_SNP [dm3] 2R_22023569_SNP [dm6]	T	G	1.228e^-4	0.927	INTRON CG34370
3L	6346202	3L_6346202_SNP [dm3] 3L_6353102_SNP [dm6]	C	A	1.236e^-4	0.927	UPSTREAM CG13300 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	9653945	2R_9653945_SNP [dm3] 2R_13766440_SNP [dm6]	G	A	1.242e^-4	0.927	INTERGENIC
2R	19306885	2R_19306885_SNP [dm3] 2R_23419362_SNP [dm6]	A	G	1.244e^-4	0.927	INTRON CG9812
2R	6671712	2R_6671712_SNP [dm3] 2R_10784207_SNP [dm6]	T	A	1.252e^-4	0.927	INTRON CG33144 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
X	1941970	X_1941970_SNP [dm3] X_2047937_SNP [dm6]	T	A	1.252e^-4	0.927	INTRON CG4313 & 1 other
3R	16548877	3R_16548877_SNP [dm3] 3R_20723155_SNP [dm6]	A	C	1.256e^-4	0.927	INTERGENIC
3L	2868245	3L_2868245_SNP [dm3] 3L_2868245_SNP [dm6]	C	T	1.269e^-4	0.927	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3L	18091399	3L_18091399_SNP [dm3] 3L_18098299_SNP [dm6]	A	C	1.271e^-4	0.927	INTRON CG13698
3R	6928451	3R_6928451_SNP [dm3] 3R_11102729_SNP [dm6]	C	T	1.273e^-4	0.927	INTERGENIC
2L	13743189	2L_13743189_SNP [dm3] 2L_13743189_SNP [dm6]	A	C	1.280e^-4	0.927	INTERGENIC
2L	4653711	2L_4653711_SNP [dm3] 2L_4653711_SNP [dm6]	A	C	1.281e^-4	0.927	DOWNSTREAM CG3355 INTERGENIC
3R	20226369	3R_20226369_SNP [dm3] 3R_24400647_SNP [dm6]	C	T	1.282e^-4	0.927	UTR_3_PRIME nAChRalpha1 DOWNSTREAM nAChRalpha1
2L	5993163	2L_5993163_SNP [dm3] 2L_5993163_SNP [dm6]	T	C	1.283e^-4	0.927	SYNONYMOUS_CODING lid	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10736424	3L_10736424_SNP [dm3] 3L_10743324_SNP [dm6]	A	T	1.286e^-4	0.927	INTERGENIC	TF binding site mE1_TFBS_Trl
3R	11598630	3R_11598630_SNP [dm3] 3R_15772908_SNP [dm6]	A	T	1.296e^-4	0.927	INTERGENIC
3R	22229908	3R_22229908_SNP [dm3] 3R_26404186_SNP [dm6]	A	T	1.301e^-4	0.927	UPSTREAM ppk15 INTERGENIC
2R	19814030	2R_19814030_SNP [dm3] 2R_23926507_SNP [dm6]	G	A	1.302e^-4	0.927	SPLICE_SITE_REGION CG2812 UTR_3_PRIME Ca-P60A DOWNSTREAM Ca-P60A INTRON CG2812	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	5062186	X_5062186_SNP [dm3] X_5168153_SNP [dm6]	C	T	1.303e^-4	0.927	INTRON rg & 1 other
2R	17041350	2R_17041350_SNP [dm3] 2R_21153845_SNP [dm6]	T	A	1.304e^-4	0.927	INTRON CG30389
3L	16004017	3L_16004017_SNP [dm3] 3L_16010917_SNP [dm6]	G	A	1.320e^-4	0.927	UPSTREAM mib1 INTRON mib1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3L	20456351	3L_20456351_SNP [dm3] 3L_20463251_SNP [dm6]	C	T	1.324e^-4	0.927	DOWNSTREAM mag INTRON CG5195	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	20457790	3L_20457790_SNP [dm3] 3L_20464690_SNP [dm6]	A	T	1.324e^-4	0.927	UPSTREAM CG5195 DOWNSTREAM CG42764 INTRON CG5195
3L	20461786	3L_20461786_SNP [dm3] 3L_20468686_SNP [dm6]	G	C	1.324e^-4	0.927	DOWNSTREAM CG32428 INTRON CG5955	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1682483	3L_1682483_SNP [dm3] 3L_1682483_SNP [dm6]	T	A	1.330e^-4	0.927	INTRON CG7991
2R	13831592	2R_13831592_SNP [dm3] 2R_17944087_SNP [dm6]	A	G	1.330e^-4	0.927	INTERGENIC
3L	15959970	3L_15959970_SNP [dm3] 3L_15966870_SNP [dm6]	T	A	1.336e^-4	0.928	INTRON l_3_72Ab	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	16528349	2R_16528349_SNP [dm3] 2R_20640844_SNP [dm6]	G	A	1.350e^-4	0.934	UPSTREAM maf-S & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
3L	17625769	3L_17625769_SNP [dm3] 3L_17632669_SNP [dm6]	A	C	1.362e^-4	0.937	UPSTREAM CG7497 DOWNSTREAM CR44567 & 1 other INTERGENIC
2R	6589768	2R_6589768_SNP [dm3] 2R_10702263_SNP [dm6]	A	T	1.369e^-4	0.937	INTRON stan
2R	6589774	2R_6589774_SNP [dm3] 2R_10702269_SNP [dm6]	T	C	1.369e^-4	0.937	INTRON stan
3L	17625788	3L_17625788_SNP [dm3] 3L_17632688_SNP [dm6]	T	A	1.379e^-4	0.937	UPSTREAM CG7497 DOWNSTREAM CR44567 & 1 other INTERGENIC
2L	14540299	2L_14540299_SNP [dm3] 2L_14540299_SNP [dm6]	T	A	1.379e^-4	0.937	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9638499	3L_9638499_SNP [dm3] 3L_9645399_SNP [dm6]	G	C	1.389e^-4	0.938	SYNONYMOUS_CODING CG33696 INTRON fry
3R	10838951	3R_10838951_SNP [dm3] 3R_15013229_SNP [dm6]	T	C	1.395e^-4	0.938	INTERGENIC
3R	18861893	3R_18861893_SNP [dm3] 3R_23036171_SNP [dm6]	G	A	1.398e^-4	0.938	UPSTREAM CG13833 INTERGENIC
3R	7340784	3R_7340784_SNP [dm3] 3R_11515062_SNP [dm6]	C	T	1.403e^-4	0.938	INTERGENIC
2R	4138301	2R_4138301_SNP [dm3] 2R_8250796_SNP [dm6]	C	A	1.409e^-4	0.938	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	20517086	3L_20517086_SNP [dm3] 3L_20523986_SNP [dm6]	G	A	1.415e^-4	0.938	SYNONYMOUS_CODING CG4825	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14845597	3L_14845597_INS [dm3] 3L_14852497_INS [dm6]	A	AA	1.425e^-4	0.938	INTRON CG17839
3R	24529165	3R_24529165_SNP [dm3] 3R_28703443_SNP [dm6]	C	T	1.437e^-4	0.938	INTRON htt	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	13462383	X_13462383_SNP [dm3] X_13568350_SNP [dm6]	G	T	1.437e^-4	0.938	INTRON Tango13
3L	20080205	3L_20080205_SNP [dm3] 3L_20087105_SNP [dm6]	C	T	1.443e^-4	0.938	INTRON sNPF-R
2R	19498809	2R_19498809_SNP [dm3] 2R_23611286_SNP [dm6]	T	A	1.450e^-4	0.938	INTRON CG17664 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	15959191	3L_15959191_SNP [dm3] 3L_15966091_SNP [dm6]	G	A	1.455e^-4	0.938	SYNONYMOUS_CODING l_3_72Ab	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	7454271	3L_7454271_SNP [dm3] 3L_7461171_SNP [dm6]	G	A	1.457e^-4	0.938	INTERGENIC
3R	22239895	3R_22239895_SNP [dm3] 3R_26414173_SNP [dm6]	A	G	1.462e^-4	0.938	SYNONYMOUS_CODING CG5432
2R	4136152	2R_4136152_SNP [dm3] 2R_8248647_SNP [dm6]	G	A	1.471e^-4	0.938	DOWNSTREAM CG44439 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	20477713	3L_20477713_SNP [dm3] 3L_20484613_SNP [dm6]	T	A	1.475e^-4	0.938	UTR_3_PRIME ZnT77C
X	19368582	X_19368582_SNP [dm3] X_19474549_SNP [dm6]	G	A	1.476e^-4	0.938	NON_SYNONYMOUS_CODING CG32533 UPSTREAM CG12200	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6589756	2R_6589756_SNP [dm3] 2R_10702251_SNP [dm6]	C	A	1.484e^-4	0.938	INTRON stan
2L	13699224	2L_13699224_INS [dm3] 2L_13699224_INS [dm6]	T	TAGAAATTATG...	1.518e^-4	0.938	INTRON CG31814	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	13699228	2L_13699228_INS [dm3] 2L_13699228_INS [dm6]	T	TGG	1.518e^-4	0.938	INTRON CG31814	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	13699236	2L_13699236_INS [dm3] 2L_13699236_INS [dm6]	T	TACGCT	1.518e^-4	0.938	INTRON CG31814	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	13699243	2L_13699243_SNP [dm3] 2L_13699243_SNP [dm6]	A	G	1.518e^-4	0.938	INTRON CG31814	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	8385398	2R_8385398_DEL [dm3] 2R_12497893_DEL [dm6]	TGGGAGT	T	1.527e^-4	0.938	INTRON fdl & 1 other	TF binding site mE1_TFBS_inv
2L	13963801	2L_13963801_SNP [dm3] 2L_13963801_SNP [dm6]	A	C	1.536e^-4	0.938	DOWNSTREAM NimA INTRON NimB1
3L	20523337	3L_20523337_SNP [dm3] 3L_20530237_SNP [dm6]	T	C	1.538e^-4	0.938	INTRON Rcd2	TF binding site BDTNP1_TFBS_dl
2R	13956129	2R_13956129_SNP [dm3] 2R_18068624_SNP [dm6]	C	T	1.543e^-4	0.938	INTRON CG34386
2R	3887512	2R_3887512_SNP [dm3] 2R_8000007_SNP [dm6]	T	C	1.543e^-4	0.938	DOWNSTREAM CG11191 INTERGENIC
3R	25301475	3R_25301475_SNP [dm3] 3R_29475753_SNP [dm6]	C	T	1.544e^-4	0.938	INTRON Ptp99A
2L	4075496	2L_4075496_SNP [dm3] 2L_4075496_SNP [dm6]	T	C	1.552e^-4	0.938	INTRON ed EXON CR44984
3R	10442205	3R_10442205_SNP [dm3] 3R_14616483_SNP [dm6]	T	G	1.556e^-4	0.938	INTRON CG14853
X	14457966	X_14457966_SNP [dm3] X_14563933_SNP [dm6]	G	T	1.557e^-4	0.938	INTERGENIC
3L	20388365	3L_20388365_SNP [dm3] 3L_20395265_SNP [dm6]	T	C	1.558e^-4	0.938	DOWNSTREAM CR45677 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	18665518	3R_18665518_SNP [dm3] 3R_22839796_SNP [dm6]	G	C	1.560e^-4	0.938	INTERGENIC
X	5688246	X_5688246_SNP [dm3] X_5794213_SNP [dm6]	G	A	1.561e^-4	0.938	SYNONYMOUS_CODING CG12239	TF binding site mE1_TFBS_sens
2R	13510905	2R_13510905_SNP [dm3] 2R_17623400_SNP [dm6]	T	A	1.568e^-4	0.938	INTRON CG10936
2L	13732148	2L_13732148_SNP [dm3] 2L_13732148_SNP [dm6]	C	T	1.568e^-4	0.938	INTERGENIC
2L	14537638	2L_14537638_SNP [dm3] 2L_14537638_SNP [dm6]	A	C	1.571e^-4	0.938	INTERGENIC	TF binding site mE1_TFBS_Ubx
3R	25300186	3R_25300186_SNP [dm3] 3R_29474464_SNP [dm6]	A	T	1.577e^-4	0.938	INTRON Ptp99A
3L	17933354	3L_17933354_SNP [dm3] 3L_17940254_SNP [dm6]	C	T	1.580e^-4	0.938	INTRON CG43174
2L	4618531	2L_4618531_SNP [dm3] 2L_4618531_SNP [dm6]	T	C	1.580e^-4	0.938	INTERGENIC	TF binding site mE1_TFBS_cad
2R	17347715	2R_17347715_SNP [dm3] 2R_21460210_SNP [dm6]	A	G	1.592e^-4	0.939	INTRON Sdc
2L	13699249	2L_13699249_SNP [dm3] 2L_13699249_SNP [dm6]	C	A	1.599e^-4	0.939	INTRON CG31814	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25300185	3R_25300185_SNP [dm3] 3R_29474463_SNP [dm6]	G	T	1.605e^-4	0.939	INTRON Ptp99A
2L	7770058	2L_7770058_SNP [dm3] 2L_7770058_SNP [dm6]	A	T	1.605e^-4	0.939	INTRON CG7191
3R	17561647	3R_17561647_SNP [dm3] 3R_21735925_SNP [dm6]	G	T	1.606e^-4	0.939	UTR_3_PRIME Sfp93F DOWNSTREAM CG42869	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23401803	3R_23401803_SNP [dm3] 3R_27576081_SNP [dm6]	A	C	1.627e^-4	0.941	INTRON wdb
2L	13699239	2L_13699239_SNP [dm3] 2L_13699239_SNP [dm6]	A	C	1.632e^-4	0.941	INTRON CG31814	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	13732136	2L_13732136_SNP [dm3] 2L_13732136_SNP [dm6]	C	G	1.633e^-4	0.941	INTERGENIC
2R	20117616	2R_20117616_SNP [dm3] 2R_24230093_SNP [dm6]	G	C	1.643e^-4	0.941	UPSTREAM CG30419 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	1556023	3L_1556023_INS [dm3] 3L_1556023_INS [dm6]	T	TT	1.647e^-4	0.941	DOWNSTREAM Cct2 INTRON CG12099	TF binding site mE1_TFBS_cad
X	5688237	X_5688237_SNP [dm3] X_5794204_SNP [dm6]	T	C	1.651e^-4	0.941	SPLICE_SITE_REGION CG12239 SYNONYMOUS_CODING CG12239	TF binding site mE1_TFBS_sens
3L	2868252	3L_2868252_DEL [dm3] 3L_2868252_DEL [dm6]	CTGGACA	C	1.654e^-4	0.941	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2R	12647649	2R_12647649_SNP [dm3] 2R_16760144_SNP [dm6]	C	T	1.656e^-4	0.941	SYNONYMOUS_CODING unc-104	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12647682	2R_12647682_SNP [dm3] 2R_16760177_SNP [dm6]	G	A	1.656e^-4	0.941	SYNONYMOUS_CODING unc-104	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7169915	2R_7169915_SNP [dm3] 2R_11282410_SNP [dm6]	A	G	1.682e^-4	0.943	SYNONYMOUS_CODING CG9062	TF binding site BDTNP1_TFBS_sna
2R	19973851	2R_19973851_SNP [dm3] 2R_24086328_SNP [dm6]	G	C	1.682e^-4	0.943	UPSTREAM snama DOWNSTREAM CG16786 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
X	14457970	X_14457970_SNP [dm3] X_14563937_SNP [dm6]	T	C	1.692e^-4	0.943	INTERGENIC
3R	10341926	3R_10341926_SNP [dm3] 3R_14516204_SNP [dm6]	C	T	1.698e^-4	0.943	SYNONYMOUS_CODING Pde6 UPSTREAM CG34273
X	13462398	X_13462398_SNP [dm3] X_13568365_SNP [dm6]	G	A	1.704e^-4	0.943	INTRON Tango13
2R	4474512	2R_4474512_SNP [dm3] 2R_8587007_SNP [dm6]	A	G	1.706e^-4	0.943	INTERGENIC	TF binding site mE1_TFBS_cad
3L	20375846	3L_20375846_SNP [dm3] 3L_20382746_SNP [dm6]	G	T	1.706e^-4	0.943	SYNONYMOUS_CODING CG5498 DOWNSTREAM RhoBTB
2R	13955568	2R_13955568_SNP [dm3] 2R_18068063_SNP [dm6]	T	G	1.716e^-4	0.943	INTRON CG34386
3L	22427864	3L_22427864_SNP [dm3] 3L_22434764_SNP [dm6]	C	G	1.718e^-4	0.943	INTERGENIC
3L	20403512	3L_20403512_SNP [dm3] 3L_20410412_SNP [dm6]	G	A	1.722e^-4	0.943	UTR_5_PRIME CG13248
3L	9907692	3L_9907692_DEL [dm3] 3L_9914592_DEL [dm6]	GGATTAAAG	G	1.728e^-4	0.943	INTRON CG34356
X	1939058	X_1939058_SNP [dm3] X_2045025_SNP [dm6]	C	G	1.728e^-4	0.943	UTR_3_PRIME moody INTRON CG4313
X	1707989	X_1707989_SNP [dm3] X_1813956_SNP [dm6]	T	A	1.734e^-4	0.943	INTRON CG42666
3L	15960157	3L_15960157_SNP [dm3] 3L_15967057_SNP [dm6]	G	A	1.737e^-4	0.943	SYNONYMOUS_CODING l_3_72Ab	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
3L	5587898	3L_5587898_SNP [dm3] 3L_5594798_SNP [dm6]	C	T	1.745e^-4	0.943	UPSTREAM CG5150 INTRON CG10592	TF binding site BDTNP1_TFBS_dl
2L	13114940	2L_13114940_SNP [dm3] 2L_13114940_SNP [dm6]	G	A	1.749e^-4	0.943	INTERGENIC
3R	4418223	3R_4418223_SNP [dm3] 3R_8592501_SNP [dm6]	C	T	1.754e^-4	0.943	INTRON 5-HT2B
2R	9578099	2R_9578099_SNP [dm3] 2R_13690594_SNP [dm6]	G	T	1.757e^-4	0.943	INTRON fas
X	8110769	X_8110769_SNP [dm3] X_8216736_SNP [dm6]	T	A	1.758e^-4	0.943	UPSTREAM sdt INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	5845257	X_5845257_SNP [dm3] X_5951224_SNP [dm6]	A	T	1.759e^-4	0.943	SYNONYMOUS_CODING CG32755	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	20184635	3R_20184635_SNP [dm3] 3R_24358913_SNP [dm6]	G	A	1.775e^-4	0.943	SYNONYMOUS_CODING CG18528 UPSTREAM Golgin84	TF binding site mE1_TFBS_sens
2R	14826244	2R_14826244_SNP [dm3] 2R_18938739_SNP [dm6]	C	A	1.778e^-4	0.943	INTRON sano
2L	13699232	2L_13699232_SNP [dm3] 2L_13699232_SNP [dm6]	T	A	1.778e^-4	0.943	INTRON CG31814	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	9595188	3R_9595188_SNP [dm3] 3R_13769466_SNP [dm6]	C	T	1.789e^-4	0.943	SYNONYMOUS_CODING Cht5
2L	13626843	2L_13626843_DEL [dm3] 2L_13626843_DEL [dm6]	AA	A	1.803e^-4	0.943	INTRON kuz
2R	17347723	2R_17347723_SNP [dm3] 2R_21460218_SNP [dm6]	A	C	1.807e^-4	0.943	INTRON Sdc
3L	7469394	3L_7469394_SNP [dm3] 3L_7476294_SNP [dm6]	T	A	1.813e^-4	0.943	DOWNSTREAM CG43292 INTERGENIC
2R	18399732	2R_18399732_SNP [dm3] 2R_22512227_SNP [dm6]	A	G	1.818e^-4	0.943	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Ubx
2L	10049666	2L_10049666_SNP [dm3] 2L_10049666_SNP [dm6]	A	T	1.839e^-4	0.943	SYNONYMOUS_CODING CG33301	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10118233	3L_10118233_SNP [dm3] 3L_10125133_SNP [dm6]	G	A	1.841e^-4	0.943	INTRON dpr6
3R	17558492	3R_17558492_SNP [dm3] 3R_21732770_SNP [dm6]	A	G	1.841e^-4	0.943	INTERGENIC
3L	10118154	3L_10118154_SNP [dm3] 3L_10125054_SNP [dm6]	C	G	1.842e^-4	0.943	INTRON dpr6
3L	12566169	3L_12566169_SNP [dm3] 3L_12573069_SNP [dm6]	G	A	1.846e^-4	0.943	UPSTREAM sowah INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13958685	2R_13958685_SNP [dm3] 2R_18071180_SNP [dm6]	A	T	1.849e^-4	0.943	INTRON CG34386
X	1938689	X_1938689_SNP [dm3] X_2044656_SNP [dm6]	G	A	1.854e^-4	0.943	UTR_3_PRIME moody UPSTREAM CG4325 INTRON CG4313
3L	20521631	3L_20521631_SNP [dm3] 3L_20528531_SNP [dm6]	T	C	1.856e^-4	0.943	NON_SYNONYMOUS_CODING Rcd2 DOWNSTREAM CG4858
3L	17927531	3L_17927531_SNP [dm3] 3L_17934431_SNP [dm6]	C	T	1.857e^-4	0.943	INTRON CG43173 & 1 other
3R	16857218	3R_16857218_SNP [dm3] 3R_21031496_SNP [dm6]	T	C	1.869e^-4	0.943	SYNONYMOUS_CODING Dhc93AB
X	1701940	X_1701940_SNP [dm3] X_1807907_SNP [dm6]	A	C	1.888e^-4	0.943	INTRON CG42666	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10458481	3R_10458481_SNP [dm3] 3R_14632759_SNP [dm6]	T	C	1.900e^-4	0.943	INTRON CG7886 & 1 other
2R	5111807	2R_5111807_SNP [dm3] 2R_9224302_SNP [dm6]	T	C	1.904e^-4	0.943	INTERGENIC
3L	7469397	3L_7469397_MNP [dm3] 3L_7476297_MNP [dm6]	ATA	TAG	1.912e^-4	0.943	DOWNSTREAM CG43292 INTERGENIC
X	2699168	X_2699168_SNP [dm3] X_2805135_SNP [dm6]	T	C	1.916e^-4	0.943	INTRON kirre
3L	2129466	3L_2129466_SNP [dm3] 3L_2129466_SNP [dm6]	G	A	1.925e^-4	0.943	INTRON zormin
2L	13732157	2L_13732157_SNP [dm3] 2L_13732157_SNP [dm6]	A	T	1.926e^-4	0.943	INTERGENIC
3R	12251329	3R_12251329_SNP [dm3] 3R_16425607_SNP [dm6]	C	A	1.933e^-4	0.943	UPSTREAM tRNA:CR31497 INTERGENIC	regulatory region REDfly_CRMs
X	1937110	X_1937110_SNP [dm3] X_2043077_SNP [dm6]	C	T	1.935e^-4	0.943	SYNONYMOUS_CODING CG4325 UPSTREAM Actn & 1 other INTRON CG4313	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	14067657	3L_14067657_SNP [dm3] 3L_14074557_SNP [dm6]	T	A	1.940e^-4	0.943	INTRON Pex1
2R	14655614	2R_14655614_SNP [dm3] 2R_18768109_SNP [dm6]	C	A	1.945e^-4	0.943	INTRON Mctp	TF binding site mE1_TFBS_chinmo
2R	16109986	2R_16109986_SNP [dm3] 2R_20222481_SNP [dm6]	G	A	1.949e^-4	0.943	UPSTREAM CR45423 INTERGENIC
3R	17233961	3R_17233961_SNP [dm3] 3R_21408239_SNP [dm6]	A	T	1.951e^-4	0.943	UTR_3_PRIME CheB93a UPSTREAM CheB93b	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	11598617	3R_11598617_SNP [dm3] 3R_15772895_SNP [dm6]	A	T	1.968e^-4	0.943	INTERGENIC
3R	25337142	3R_25337142_SNP [dm3] 3R_29511420_SNP [dm6]	G	C	1.968e^-4	0.943	INTERGENIC
3L	20484986	3L_20484986_SNP [dm3] 3L_20491886_SNP [dm6]	G	A	1.969e^-4	0.943	UPSTREAM CG6020 INTRON ZnT77C
3L	19268621	3L_19268621_DEL [dm3] 3L_19275521_DEL [dm6]	TT	T	1.976e^-4	0.943	UPSTREAM CG14086 INTERGENIC
X	5221812	X_5221812_SNP [dm3] X_5327779_SNP [dm6]	G	A	1.977e^-4	0.943	SYNONYMOUS_CODING CG3309	TF binding site mE1_TFBS_chinmo
X	21871882	X_21871882_SNP [dm3] X_22470046_SNP [dm6]	G	A	1.978e^-4	0.943	UTR_3_PRIME CG14619 & 1 other DOWNSTREAM CG14613
3L	1295517	3L_1295517_SNP [dm3] 3L_1295517_SNP [dm6]	T	A	1.980e^-4	0.943	UTR_3_PRIME CG32333 UPSTREAM Rabex-5	TF binding site BDTNP1_TFBS_dl
3L	10418620	3L_10418620_SNP [dm3] 3L_10425520_SNP [dm6]	T	G	1.980e^-4	0.943	INTERGENIC
3L	13507128	3L_13507128_SNP [dm3] 3L_13514028_SNP [dm6]	A	G	1.986e^-4	0.943	SYNONYMOUS_CODING Liprin-beta UPSTREAM Vps36	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv mE1_TFBS_sens
X	12051107	X_12051107_SNP [dm3] X_12157074_SNP [dm6]	C	T	1.997e^-4	0.943	INTRON Ten-a
X	16196724	X_16196724_INS [dm3] X_16302691_INS [dm6]	A	ACA	1.998e^-4	0.943	INTRON CG3632
3R	22231813	3R_22231813_SNP [dm3] 3R_26406091_SNP [dm6]	A	G	2.020e^-4	0.943	INTERGENIC
3L	14332765	3L_14332765_SNP [dm3] 3L_14339665_SNP [dm6]	G	C	2.023e^-4	0.943	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	13343003	2L_13343003_SNP [dm3] 2L_13343003_SNP [dm6]	A	C	2.029e^-4	0.943	INTERGENIC
3L	13081362	3L_13081362_SNP [dm3] 3L_13088262_SNP [dm6]	G	A	2.030e^-4	0.943	UPSTREAM CG17300 DOWNSTREAM CG11251 EXON CR45749	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	4896302	X_4896302_SNP [dm3] X_5002269_SNP [dm6]	C	A	2.033e^-4	0.943	INTRON CR44833	regulatory region REDfly_CRMs
3L	15960646	3L_15960646_SNP [dm3] 3L_15967546_SNP [dm6]	A	T	2.038e^-4	0.943	SYNONYMOUS_CODING l_3_72Ab UPSTREAM CG10516	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	19813765	2R_19813765_SNP [dm3] 2R_23926242_SNP [dm6]	T	A	2.040e^-4	0.943	UTR_3_PRIME Ca-P60A DOWNSTREAM Ca-P60A INTRON CG2812	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	7340761	3R_7340761_SNP [dm3] 3R_11515039_SNP [dm6]	T	C	2.043e^-4	0.943	INTERGENIC
2R	13957683	2R_13957683_SNP [dm3] 2R_18070178_SNP [dm6]	A	T	2.047e^-4	0.943	INTRON CG34386
X	13462387	X_13462387_SNP [dm3] X_13568354_SNP [dm6]	T	A	2.050e^-4	0.943	INTRON Tango13
2R	14149300	2R_14149300_INS [dm3] 2R_18261795_INS [dm6]	T	TC	2.051e^-4	0.943	INTERGENIC
2R	14149303	2R_14149303_DEL [dm3] 2R_18261798_DEL [dm6]	AAACT	A	2.051e^-4	0.943	INTERGENIC
2R	13790564	2R_13790564_SNP [dm3] 2R_17903059_SNP [dm6]	C	T	2.053e^-4	0.943	INTRON Elk
3L	9577230	3L_9577230_SNP [dm3] 3L_9584130_SNP [dm6]	A	T	2.061e^-4	0.943	INTRON CG42673
X	1938688	X_1938688_SNP [dm3] X_2044655_SNP [dm6]	G	A	2.061e^-4	0.943	UTR_3_PRIME moody UPSTREAM CG4325 INTRON CG4313
2R	13954463	2R_13954463_SNP [dm3] 2R_18066958_SNP [dm6]	A	G	2.067e^-4	0.943	INTRON CG34386
X	15014939	X_15014939_SNP [dm3] X_15120906_SNP [dm6]	T	C	2.068e^-4	0.943	INTERGENIC
2R	14658698	2R_14658698_SNP [dm3] 2R_18771193_SNP [dm6]	T	A	2.080e^-4	0.943	UPSTREAM Mctp DOWNSTREAM tRNA:CR30229 INTRON Mctp
2R	14658699	2R_14658699_DEL [dm3] 2R_18771194_DEL [dm6]	AT	A	2.080e^-4	0.943	UPSTREAM Mctp DOWNSTREAM tRNA:CR30229 INTRON Mctp
3L	20374399	3L_20374399_SNP [dm3] 3L_20381299_SNP [dm6]	G	A	2.080e^-4	0.943	SPLICE_SITE_REGION RhoBTB INTRON RhoBTB	TF binding site mE1_TFBS_cad
3L	14000649	3L_14000649_SNP [dm3] 3L_14007549_SNP [dm6]	C	T	2.081e^-4	0.943	UTR_5_PRIME upSET	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12544303	3L_12544303_SNP [dm3] 3L_12551203_SNP [dm6]	T	C	2.082e^-4	0.943	INTRON sowah	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	20482750	3L_20482750_SNP [dm3] 3L_20489650_SNP [dm6]	G	A	2.101e^-4	0.947	INTRON ZnT77C
X	1942287	X_1942287_SNP [dm3] X_2048254_SNP [dm6]	A	T	2.102e^-4	0.947	UTR_5_PRIME moody INTRON CG4313 & 1 other
3R	22239934	3R_22239934_SNP [dm3] 3R_26414212_SNP [dm6]	T	A	2.116e^-4	0.947	SYNONYMOUS_CODING CG5432
2R	3292785	2R_3292785_SNP [dm3] 2R_7405280_SNP [dm6]	C	G	2.117e^-4	0.947	DOWNSTREAM CG43267 INTRON Eaf
3L	8161804	3L_8161804_DEL [dm3] 3L_8168704_DEL [dm6]	CTG	C	2.124e^-4	0.947	INTERGENIC
3L	21901095	3L_21901095_SNP [dm3] 3L_21907995_SNP [dm6]	T	C	2.124e^-4	0.947	INTRON mub
3L	9641593	3L_9641593_SNP [dm3] 3L_9648493_SNP [dm6]	A	C	2.125e^-4	0.947	INTRON fry & 1 other
3L	4078472	3L_4078472_SNP [dm3] 3L_4078472_SNP [dm6]	T	G	2.146e^-4	0.948	INTRON Gad1
3L	13995163	3L_13995163_SNP [dm3] 3L_14002063_SNP [dm6]	A	C	2.155e^-4	0.948	UPSTREAM upSET & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2R	18285012	2R_18285012_SNP [dm3] 2R_22397507_SNP [dm6]	C	A	2.156e^-4	0.948	INTRON babos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16583775	2R_16583775_SNP [dm3] 2R_20696270_SNP [dm6]	G	T	2.157e^-4	0.948	INTERGENIC
2L	13699238	2L_13699238_SNP [dm3] 2L_13699238_SNP [dm6]	T	G	2.157e^-4	0.948	INTRON CG31814	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	20483996	3L_20483996_SNP [dm3] 3L_20490896_SNP [dm6]	T	A	2.184e^-4	0.948	INTRON ZnT77C
2R	5107966	2R_5107966_SNP [dm3] 2R_9220461_SNP [dm6]	A	T	2.190e^-4	0.948	INTERGENIC
3R	11598521	3R_11598521_SNP [dm3] 3R_15772799_SNP [dm6]	C	T	2.195e^-4	0.948	INTERGENIC
3R	11598632	3R_11598632_SNP [dm3] 3R_15772910_SNP [dm6]	C	T	2.196e^-4	0.948	INTERGENIC
2L	11174021	2L_11174021_SNP [dm3] 2L_11174021_SNP [dm6]	G	A	2.197e^-4	0.948	INTRON Ca-beta	TF binding site mE1_TFBS_HSA
3L	12587352	3L_12587352_SNP [dm3] 3L_12594252_SNP [dm6]	A	G	2.197e^-4	0.948	SYNONYMOUS_CODING ara	TF binding site mE1_TFBS_cad
3R	17982482	3R_17982482_SNP [dm3] 3R_22156760_SNP [dm6]	G	T	2.198e^-4	0.948	INTRON SKIP
3R	23409755	3R_23409755_SNP [dm3] 3R_27584033_SNP [dm6]	A	G	2.198e^-4	0.948	NON_SYNONYMOUS_CODING raps	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	16447088	2L_16447088_SNP [dm3] 2L_16447088_SNP [dm6]	C	A	2.201e^-4	0.948	UPSTREAM Idgf2 DOWNSTREAM Idgf1 INTRON CG5888
3L	18003160	3L_18003160_SNP [dm3] 3L_18010060_SNP [dm6]	A	G	2.204e^-4	0.948	INTRON Eip75B	TF binding site mE1_TFBS_Trl
2R	11838300	2R_11838300_SNP [dm3] 2R_15950795_SNP [dm6]	C	A	2.221e^-4	0.952	UTR_5_PRIME Strn-Mlck DOWNSTREAM Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_HSA
X	3333622	X_3333622_SNP [dm3] X_3439589_SNP [dm6]	G	A	2.225e^-4	0.952	INTRON CR44999 & 1 other
3L	22431272	3L_22431272_SNP [dm3] 3L_22438172_SNP [dm6]	A	C	2.233e^-4	0.952	INTERGENIC
2R	19749207	2R_19749207_SNP [dm3] 2R_23861684_SNP [dm6]	T	C	2.239e^-4	0.952	UTR_5_PRIME TBPH INTRON TBPH	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	16857206	3R_16857206_SNP [dm3] 3R_21031484_SNP [dm6]	T	C	2.242e^-4	0.952	SYNONYMOUS_CODING Dhc93AB
3L	20491479	3L_20491479_SNP [dm3] 3L_20498379_SNP [dm6]	G	C	2.244e^-4	0.952	SYNONYMOUS_CODING CG32425 INTRON CG32425	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	18453008	2R_18453008_SNP [dm3] 2R_22565503_SNP [dm6]	T	A	2.250e^-4	0.953	INTRON dnr1
2L	3734550	2L_3734550_SNP [dm3] 2L_3734550_SNP [dm6]	G	T	2.257e^-4	0.953	INTRON CG10019
3L	9582866	3L_9582866_SNP [dm3] 3L_9589766_SNP [dm6]	G	T	2.260e^-4	0.953	INTRON CG42673
2R	7169461	2R_7169461_SNP [dm3] 2R_11281956_SNP [dm6]	T	C	2.278e^-4	0.956	SPLICE_SITE_REGION CG9062 DOWNSTREAM Vhl INTRON CG9062
3L	1613217	3L_1613217_SNP [dm3] 3L_1613217_SNP [dm6]	C	T	2.279e^-4	0.956	NON_SYNONYMOUS_CODING CG12105 INTRON CG33791 & 1 other
X	3465883	X_3465883_SNP [dm3] X_3571850_SNP [dm6]	G	A	2.288e^-4	0.957	SYNONYMOUS_CODING CG2875 UTR_3_PRIME ppk8 UPSTREAM CG32791	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	14058733	X_14058733_SNP [dm3] X_14164700_SNP [dm6]	C	T	2.308e^-4	0.957	INTERGENIC
3R	24623932	3R_24623932_SNP [dm3] 3R_28798210_SNP [dm6]	G	T	2.311e^-4	0.957	INTERGENIC
3L	14365358	3L_14365358_SNP [dm3] 3L_14372258_SNP [dm6]	G	A	2.312e^-4	0.957	INTERGENIC
3R	8543951	3R_8543951_SNP [dm3] 3R_12718229_SNP [dm6]	C	G	2.314e^-4	0.957	INTRON Men
3R	20245388	3R_20245388_SNP [dm3] 3R_24419666_SNP [dm6]	T	C	2.315e^-4	0.957	INTRON nAChRalpha1
3L	1295660	3L_1295660_SNP [dm3] 3L_1295660_SNP [dm6]	A	C	2.317e^-4	0.957	UTR_3_PRIME CG32333 UPSTREAM Rabex-5	TF binding site BDTNP1_TFBS_dl
3R	22606048	3R_22606048_SNP [dm3] 3R_26780326_SNP [dm6]	A	G	2.322e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	16025231	X_16025231_SNP [dm3] X_16131198_SNP [dm6]	C	A	2.331e^-4	0.958	INTRON disco-r
3L	7469395	3L_7469395_SNP [dm3] 3L_7476295_SNP [dm6]	A	C	2.340e^-4	0.958	DOWNSTREAM CG43292 INTERGENIC
3L	10722989	3L_10722989_DEL [dm3] 3L_10729889_DEL [dm6]	TGATAAGTTTAAT...	T	2.342e^-4	0.958	INTERGENIC
X	1937963	X_1937963_SNP [dm3] X_2043930_SNP [dm6]	T	C	2.345e^-4	0.958	UPSTREAM CG4325 DOWNSTREAM moody INTRON CG4313	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	2743644	2L_2743644_SNP [dm3] 2L_2743644_SNP [dm6]	C	T	2.377e^-4	0.966	SYNONYMOUS_CODING CG9961 UTR_3_PRIME CG9961 DOWNSTREAM Hrs
2L	13726367	2L_13726367_SNP [dm3] 2L_13726367_SNP [dm6]	A	C	2.378e^-4	0.966	INTERGENIC
X	2948271	X_2948271_SNP [dm3] X_3054238_SNP [dm6]	A	T	2.383e^-4	0.966	INTRON kirre	TF binding site BDTNP1_TFBS_dl
3L	15252791	3L_15252791_SNP [dm3] 3L_15259691_SNP [dm6]	A	G	2.394e^-4	0.966	INTERGENIC	TF binding site mE1_TFBS_inv
X	1699195	X_1699195_SNP [dm3] X_1805162_SNP [dm6]	G	A	2.408e^-4	0.966	INTRON CG42666	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19411560	2R_19411560_SNP [dm3] 2R_23524037_SNP [dm6]	G	A	2.412e^-4	0.966	UTR_5_PRIME mi UPSTREAM RabX1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
3L	8162022	3L_8162022_SNP [dm3] 3L_8168922_SNP [dm6]	A	T	2.425e^-4	0.966	INTERGENIC
2R	19975211	2R_19975211_SNP [dm3] 2R_24087688_SNP [dm6]	C	T	2.427e^-4	0.966	SYNONYMOUS_CODING snama
X	1960011	X_1960011_SNP [dm3] X_2065978_SNP [dm6]	A	C	2.431e^-4	0.966	NON_SYNONYMOUS_CODING CG14054 UPSTREAM CG4281 DOWNSTREAM CG4199 EXON CR44381	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	3871951	3L_3871951_SNP [dm3] 3L_3871951_SNP [dm6]	T	C	2.437e^-4	0.966	INTERGENIC
2R	8450113	2R_8450113_DEL [dm3] 2R_12562608_DEL [dm6]	TT	T	2.441e^-4	0.966	UTR_3_PRIME CG30056 INTRON fra
2R	9563152	2R_9563152_INS [dm3] 2R_13675647_INS [dm6]	G	GGCA	2.443e^-4	0.966	INTRON fas	TF binding site BDTNP1_TFBS_twi
3L	16903595	3L_16903595_DEL [dm3] 3L_16910495_DEL [dm6]	CGCAC	C	2.444e^-4	0.966	UPSTREAM Lmpt INTRON Lmpt
X	3333619	X_3333619_SNP [dm3] X_3439586_SNP [dm6]	T	C	2.454e^-4	0.966	INTRON CR44999 & 1 other
3R	18665509	3R_18665509_SNP [dm3] 3R_22839787_SNP [dm6]	C	T	2.471e^-4	0.966	INTERGENIC
2R	21132124	2R_21132124_SNP [dm3] 2R_25244601_SNP [dm6]	C	A	2.472e^-4	0.966	INTRON CG9380	TF binding site mE1_TFBS_Kr
2L	12948206	2L_12948206_SNP [dm3] 2L_12948206_SNP [dm6]	C	T	2.479e^-4	0.966	INTERGENIC
3R	11598790	3R_11598790_SNP [dm3] 3R_15773068_SNP [dm6]	G	A	2.479e^-4	0.966	INTERGENIC
3L	7469437	3L_7469437_SNP [dm3] 3L_7476337_SNP [dm6]	A	G	2.480e^-4	0.966	DOWNSTREAM CG43292 INTERGENIC
2R	10718082	2R_10718082_DEL [dm3] 2R_14830577_DEL [dm6]	CACC	C	2.485e^-4	0.966	INTERGENIC
3L	8162021	3L_8162021_SNP [dm3] 3L_8168921_SNP [dm6]	C	A	2.492e^-4	0.966	INTERGENIC
3R	10451117	3R_10451117_SNP [dm3] 3R_14625395_SNP [dm6]	T	C	2.499e^-4	0.966	UTR_5_PRIME put UPSTREAM His4r	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	6944550	2L_6944550_SNP [dm3] 2L_6944550_SNP [dm6]	A	C	2.500e^-4	0.966	SYNONYMOUS_CODING CG10158 DOWNSTREAM ihog	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	13732151	2L_13732151_SNP [dm3] 2L_13732151_SNP [dm6]	C	G	2.512e^-4	0.966	INTERGENIC
3R	16548828	3R_16548828_SNP [dm3] 3R_20723106_SNP [dm6]	G	A	2.514e^-4	0.966	INTERGENIC
3R	19576115	3R_19576115_SNP [dm3] 3R_23750393_SNP [dm6]	G	C	2.519e^-4	0.966	DOWNSTREAM RanBP3 INTRON Hmgcr	TF binding site mE1_TFBS_cad
X	5973930	X_5973930_SNP [dm3] X_6079897_SNP [dm6]	T	G	2.533e^-4	0.966	INTRON CG4660
2R	19974686	2R_19974686_DEL [dm3] 2R_24087163_DEL [dm6]	TA	T	2.536e^-4	0.966	DOWNSTREAM CG16786 INTRON snama	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11598640	3R_11598640_SNP [dm3] 3R_15772918_SNP [dm6]	A	G	2.540e^-4	0.966	INTERGENIC
3L	6858736	3L_6858736_SNP [dm3] 3L_6865636_SNP [dm6]	T	A	2.561e^-4	0.966	EXON CR45115
2L	6944385	2L_6944385_SNP [dm3] 2L_6944385_SNP [dm6]	T	C	2.561e^-4	0.966	SYNONYMOUS_CODING CG10158	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	13957706	2R_13957706_SNP [dm3] 2R_18070201_SNP [dm6]	A	T	2.563e^-4	0.966	INTRON CG34386
2R	17347738	2R_17347738_SNP [dm3] 2R_21460233_SNP [dm6]	A	G	2.568e^-4	0.966	INTRON Sdc
3L	20460111	3L_20460111_SNP [dm3] 3L_20467011_SNP [dm6]	A	T	2.568e^-4	0.966	UTR_5_PRIME CG5955 UPSTREAM CG42764
3R	24541299	3R_24541299_SNP [dm3] 3R_28715577_SNP [dm6]	C	T	2.569e^-4	0.966	INTRON htt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	7467436	3L_7467436_SNP [dm3] 3L_7474336_SNP [dm6]	A	G	2.572e^-4	0.966	INTERGENIC
3L	8488994	3L_8488994_SNP [dm3] 3L_8495894_SNP [dm6]	C	T	2.576e^-4	0.966	INTRON CG43163
2L	1057946	2L_1057946_SNP [dm3] 2L_1057946_SNP [dm6]	C	T	2.592e^-4	0.966	INTRON S	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	8473300	X_8473300_SNP [dm3] X_8579267_SNP [dm6]	G	A	2.594e^-4	0.966	INTRON CG12065
3L	5587892	3L_5587892_SNP [dm3] 3L_5594792_SNP [dm6]	A	C	2.594e^-4	0.966	UPSTREAM CG5150 INTRON CG10592	TF binding site BDTNP1_TFBS_dl
3L	7833807	3L_7833807_INS [dm3] 3L_7840707_INS [dm6]	T	TT	2.596e^-4	0.966	INTRON Pdp1	regulatory region REDfly_CRMs
2L	17536244	2L_17536244_SNP [dm3] 2L_17536244_SNP [dm6]	A	C	2.602e^-4	0.966	INTERGENIC
3L	17671045	3L_17671045_SNP [dm3] 3L_17677945_SNP [dm6]	C	T	2.606e^-4	0.966	INTRON CG34251
X	18622262	X_18622262_SNP [dm3] X_18728229_SNP [dm6]	C	A	2.612e^-4	0.966	INTERGENIC
3L	11701155	3L_11701155_SNP [dm3] 3L_11708055_SNP [dm6]	A	T	2.621e^-4	0.966	UPSTREAM CG11658 & 2 others INTRON CG11658	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	11598622	3R_11598622_SNP [dm3] 3R_15772900_SNP [dm6]	C	T	2.623e^-4	0.966	INTERGENIC
3L	7469392	3L_7469392_SNP [dm3] 3L_7476292_SNP [dm6]	T	A	2.623e^-4	0.966	DOWNSTREAM CG43292 INTERGENIC
3R	20383622	3R_20383622_SNP [dm3] 3R_24557900_SNP [dm6]	A	T	2.624e^-4	0.966	UTR_3_PRIME CG13624 DOWNSTREAM snRNA:U6:96Ac
2R	12654089	2R_12654089_SNP [dm3] 2R_16766584_SNP [dm6]	C	T	2.636e^-4	0.966	UPSTREAM CG5348 & 2 others INTRON unc-104
3R	16549074	3R_16549074_SNP [dm3] 3R_20723352_SNP [dm6]	G	C	2.641e^-4	0.966	INTERGENIC
3R	20307882	3R_20307882_SNP [dm3] 3R_24482160_SNP [dm6]	C	G	2.646e^-4	0.966	INTERGENIC
3L	10453053	3L_10453053_SNP [dm3] 3L_10459953_SNP [dm6]	A	G	2.654e^-4	0.966	SYNONYMOUS_CODING Gem3	TF binding site mE1_TFBS_sens
2R	6671682	2R_6671682_SNP [dm3] 2R_10784177_SNP [dm6]	A	G	2.655e^-4	0.966	INTRON CG33144 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	12651674	2R_12651674_SNP [dm3] 2R_16764169_SNP [dm6]	T	G	2.655e^-4	0.966	UTR_5_PRIME unc-104 INTRON unc-104	TF binding site mE1_TFBS_Trl
3L	12678331	3L_12678331_SNP [dm3] 3L_12685231_SNP [dm6]	T	C	2.661e^-4	0.966	INTERGENIC
3R	22184593	3R_22184593_SNP [dm3] 3R_26358871_SNP [dm6]	T	A	2.666e^-4	0.966	INTRON CG33970
3L	6514739	3L_6514739_INS [dm3] 3L_6521639_INS [dm6]	C	CTG	2.667e^-4	0.966	INTRON sfl
3L	12789542	3L_12789542_SNP [dm3] 3L_12796442_SNP [dm6]	T	G	2.668e^-4	0.966	DOWNSTREAM CG42709 INTRON Atg1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	5543259	2L_5543259_SNP [dm3] 2L_5543259_SNP [dm6]	T	A	2.670e^-4	0.966	UTR_5_PRIME Lam UPSTREAM Hel25E INTRON Lam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	5806568	X_5806568_SNP [dm3] X_5912535_SNP [dm6]	C	T	2.674e^-4	0.966	SYNONYMOUS_CODING CG12236 DOWNSTREAM CG12236 & 1 other	TF binding site mE1_TFBS_Trl
2R	12000155	2R_12000155_SNP [dm3] 2R_16112650_SNP [dm6]	A	C	2.691e^-4	0.968	NON_SYNONYMOUS_CODING Asph
X	8473342	X_8473342_SNP [dm3] X_8579309_SNP [dm6]	T	A	2.693e^-4	0.968	INTRON CG12065
X	11971864	X_11971864_SNP [dm3] X_12077831_SNP [dm6]	T	C	2.717e^-4	0.968	INTRON CR43960 & 1 other
2R	19975281	2R_19975281_SNP [dm3] 2R_24087758_SNP [dm6]	C	T	2.726e^-4	0.968	INTRON snama
3R	9659208	3R_9659208_SNP [dm3] 3R_13833486_SNP [dm6]	C	T	2.729e^-4	0.968	DOWNSTREAM Nsf2 INTERGENIC	TF binding site mE1_TFBS_bab1
2L	13690421	2L_13690421_SNP [dm3] 2L_13690421_SNP [dm6]	T	C	2.748e^-4	0.968	INTRON CG31814
3L	20080169	3L_20080169_SNP [dm3] 3L_20087069_SNP [dm6]	C	A	2.758e^-4	0.968	INTRON sNPF-R
2R	21124040	2R_21124040_DEL [dm3] 2R_25236517_DEL [dm6]	CATC	C	2.760e^-4	0.968	INTRON CG9380
3L	20494826	3L_20494826_SNP [dm3] 3L_20501726_SNP [dm6]	G	T	2.762e^-4	0.968	DOWNSTREAM CG18281 INTRON CG32425	transposable element FlyBase
3L	22433544	3L_22433544_SNP [dm3] 3L_22440444_SNP [dm6]	C	T	2.763e^-4	0.968	INTERGENIC
3R	22239925	3R_22239925_SNP [dm3] 3R_26414203_SNP [dm6]	G	T	2.772e^-4	0.968	SYNONYMOUS_CODING CG5432
3R	11598628	3R_11598628_SNP [dm3] 3R_15772906_SNP [dm6]	T	A	2.779e^-4	0.968	INTERGENIC
2R	20979896	2R_20979896_SNP [dm3] 2R_25092373_SNP [dm6]	A	G	2.785e^-4	0.968	INTRON lov
2R	21028566	2R_21028566_SNP [dm3] 2R_25141043_SNP [dm6]	C	T	2.785e^-4	0.968	INTERGENIC
2L	12485348	2L_12485348_SNP [dm3] 2L_12485348_SNP [dm6]	C	G	2.786e^-4	0.968	INTRON bun	TF binding site mE1_TFBS_Trl
3L	15938598	3L_15938598_SNP [dm3] 3L_15945498_SNP [dm6]	A	C	2.792e^-4	0.968	INTRON Pka-C3	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
X	1934921	X_1934921_SNP [dm3] X_2040888_SNP [dm6]	C	T	2.797e^-4	0.968	NON_SYNONYMOUS_CODING usp UPSTREAM CG4313 INTRON Actn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12835847	3L_12835847_SNP [dm3] 3L_12842747_SNP [dm6]	A	G	2.803e^-4	0.968	INTRON CG10960	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	19368536	X_19368536_SNP [dm3] X_19474503_SNP [dm6]	G	A	2.805e^-4	0.968	SYNONYMOUS_CODING CG32533 UPSTREAM CG12200	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17347705	2R_17347705_SNP [dm3] 2R_21460200_SNP [dm6]	A	G	2.808e^-4	0.968	INTRON Sdc
X	15015023	X_15015023_SNP [dm3] X_15120990_SNP [dm6]	A	G	2.812e^-4	0.968	INTERGENIC
3L	5044787	3L_5044787_DEL [dm3] 3L_5044787_DEL [dm6]	ATCTACTTGGGGTA...	A	2.816e^-4	0.968	INTRON Con
3R	23413170	3R_23413170_SNP [dm3] 3R_27587448_SNP [dm6]	G	A	2.823e^-4	0.968	SYNONYMOUS_CODING CG5639	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	20457094	3L_20457094_SNP [dm3] 3L_20463994_SNP [dm6]	T	G	2.826e^-4	0.968	DOWNSTREAM CG42764 INTRON CG5195
3L	10244477	3L_10244477_SNP [dm3] 3L_10251377_SNP [dm6]	T	C	2.829e^-4	0.968	INTERGENIC
3R	12903179	3R_12903179_SNP [dm3] 3R_17077457_SNP [dm6]	C	T	2.833e^-4	0.968	INTRON Keap1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	20999505	2R_20999505_SNP [dm3] 2R_25111982_SNP [dm6]	T	A	2.838e^-4	0.968	INTRON lov	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	14771161	3R_14771161_SNP [dm3] 3R_18945439_SNP [dm6]	G	T	2.842e^-4	0.968	INTRON CG42613
X	3021442	X_3021442_DEL [dm3] X_3127409_DEL [dm6]	AC	A	2.848e^-4	0.968	INTRON kirre
3L	20455405	3L_20455405_SNP [dm3] 3L_20462305_SNP [dm6]	C	T	2.852e^-4	0.968	DOWNSTREAM mag INTRON CG5195
3L	20477905	3L_20477905_SNP [dm3] 3L_20484805_SNP [dm6]	T	G	2.853e^-4	0.968	SYNONYMOUS_CODING ZnT77C
2L	17367424	2L_17367424_DEL [dm3] 2L_17367424_DEL [dm6]	TT	T	2.854e^-4	0.968	DOWNSTREAM Lrch INTERGENIC
3L	7469438	3L_7469438_SNP [dm3] 3L_7476338_SNP [dm6]	A	T	2.860e^-4	0.968	DOWNSTREAM CG43292 INTERGENIC
2R	21137673	2R_21137673_DEL [dm3] 2R_25250150_DEL [dm6]	GGCAGTAGATCGTGCTT...	G	2.861e^-4	0.968	INTRON CG9380 & 1 other
3R	17701840	3R_17701840_SNP [dm3] 3R_21876118_SNP [dm6]	A	G	2.866e^-4	0.968	INTRON CG6656
3L	7024513	3L_7024513_SNP [dm3] 3L_7031413_SNP [dm6]	C	T	2.867e^-4	0.968	INTRON Mp
X	19996776	X_19996776_SNP [dm3] X_20102743_SNP [dm6]	C	G	2.870e^-4	0.968	INTERGENIC	transposable element FlyBase
3R	6974733	3R_6974733_SNP [dm3] 3R_11149011_SNP [dm6]	G	A	2.878e^-4	0.968	INTERGENIC
2R	21086324	2R_21086324_SNP [dm3] 2R_25198801_SNP [dm6]	T	G	2.879e^-4	0.968	INTRON CG9380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	14365339	3L_14365339_SNP [dm3] 3L_14372239_SNP [dm6]	T	A	2.887e^-4	0.969	INTERGENIC
3L	399738	3L_399738_SNP [dm3] 3L_399738_SNP [dm6]	A	C	2.909e^-4	0.973	INTERGENIC	TF binding site mE1_TFBS_cad
2R	5219214	2R_5219214_SNP [dm3] 2R_9331709_SNP [dm6]	C	T	2.918e^-4	0.973	INTRON CG13954 & 1 other
2R	5906146	2R_5906146_SNP [dm3] 2R_10018641_SNP [dm6]	C	A	2.918e^-4	0.973	INTRON Pka-R2
3R	26290178	3R_26290178_SNP [dm3] 3R_30464456_SNP [dm6]	T	A	2.930e^-4	0.973	INTRON CDase
3R	22435330	3R_22435330_SNP [dm3] 3R_26609608_SNP [dm6]	A	G	2.934e^-4	0.973	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	10442201	3R_10442201_SNP [dm3] 3R_14616479_SNP [dm6]	A	T	2.936e^-4	0.973	INTRON CG14853
2L	2896507	2L_2896507_SNP [dm3] 2L_2896507_SNP [dm6]	T	A	2.939e^-4	0.973	INTRON lilli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	21137690	2R_21137690_INS [dm3] 2R_25250167_INS [dm6]	T	TAAAG	2.950e^-4	0.973	INTRON CG9380 & 1 other
2R	12647601	2R_12647601_SNP [dm3] 2R_16760096_SNP [dm6]	C	T	2.951e^-4	0.973	SYNONYMOUS_CODING unc-104	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	20453219	3L_20453219_SNP [dm3] 3L_20460119_SNP [dm6]	T	C	2.955e^-4	0.973	UPSTREAM CG5195 & 1 other INTRON CG5195
X	15015012	X_15015012_SNP [dm3] X_15120979_SNP [dm6]	C	T	2.957e^-4	0.973	INTERGENIC
2L	12994852	2L_12994852_SNP [dm3] 2L_12994852_SNP [dm6]	A	T	2.978e^-4	0.976	INTRON CG12404
2L	12994854	2L_12994854_SNP [dm3] 2L_12994854_SNP [dm6]	G	C	2.978e^-4	0.976	INTRON CG12404
3R	17566158	3R_17566158_SNP [dm3] 3R_21740436_SNP [dm6]	T	C	2.982e^-4	0.976	NON_SYNONYMOUS_CODING CG5849	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	15138419	3R_15138419_SNP [dm3] 3R_19312697_SNP [dm6]	C	A	2.992e^-4	0.978	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	8613078	X_8613078_SNP [dm3] X_8719045_SNP [dm6]	A	T	2.997e^-4	0.978	SYNONYMOUS_CODING l_1_G0020	TF binding site mE1_TFBS_sens
2L	10587176	2L_10587176_SNP [dm3] 2L_10587176_SNP [dm6]	C	G	3.004e^-4	0.978	INTRON Trim9
2L	2851122	2L_2851122_SNP [dm3] 2L_2851122_SNP [dm6]	C	G	3.030e^-4	0.978	INTRON CG3104
3R	6305896	3R_6305896_SNP [dm3] 3R_10480174_SNP [dm6]	C	A	3.032e^-4	0.978	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	6861287	2R_6861287_INS [dm3] 2R_10973782_INS [dm6]	A	AAG	3.034e^-4	0.978	INTERGENIC
2R	17273266	2R_17273266_SNP [dm3] 2R_21385761_SNP [dm6]	G	A	3.047e^-4	0.978	NON_SYNONYMOUS_CODING EfSec UPSTREAM Acox57D-p	TF binding site BDTNP1_TFBS_dl
X	2699328	X_2699328_SNP [dm3] X_2805295_SNP [dm6]	A	G	3.049e^-4	0.978	INTRON kirre
2R	12400153	2R_12400153_SNP [dm3] 2R_16512648_SNP [dm6]	T	C	3.052e^-4	0.978	INTRON Sema-2a
X	16705973	X_16705973_SNP [dm3] X_16811940_SNP [dm6]	A	G	3.053e^-4	0.978	UTR_5_PRIME CG4829
2L	16969793	2L_16969793_SNP [dm3] 2L_16969793_SNP [dm6]	C	A	3.059e^-4	0.978	INTERGENIC
3L	11701161	3L_11701161_SNP [dm3] 3L_11708061_SNP [dm6]	A	G	3.060e^-4	0.978	UPSTREAM CG11658 & 2 others INTRON CG11658	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	10042856	2R_10042856_SNP [dm3] 2R_14155351_SNP [dm6]	G	A	3.060e^-4	0.978	SYNONYMOUS_CODING pea	TF binding site mE1_TFBS_sens
2R	21099130	2R_21099130_SNP [dm3] 2R_25211607_SNP [dm6]	A	G	3.078e^-4	0.978	INTRON CG9380	regulatory region FlyBase TF binding site BDTNP1_TFBS_hb
3L	14332826	3L_14332826_SNP [dm3] 3L_14339726_SNP [dm6]	A	G	3.081e^-4	0.978	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	6957377	3R_6957377_SNP [dm3] 3R_11131655_SNP [dm6]	T	G	3.092e^-4	0.978	INTERGENIC
2L	18595700	2L_18595700_SNP [dm3] 2L_18595700_SNP [dm6]	T	G	3.093e^-4	0.978	DOWNSTREAM amos & 1 other INTERGENIC	regulatory region REDfly_CRMs
3L	1289733	3L_1289733_SNP [dm3] 3L_1289733_SNP [dm6]	C	T	3.108e^-4	0.978	INTRON CG32333
2R	14585253	2R_14585253_SNP [dm3] 2R_18697748_SNP [dm6]	G	C	3.111e^-4	0.978	DOWNSTREAM CG15071 INTRON Sik3
2R	6124212	2R_6124212_SNP [dm3] 2R_10236707_SNP [dm6]	A	G	3.117e^-4	0.978	INTRON Hr46
2L	7046783	2L_7046783_SNP [dm3] 2L_7046783_SNP [dm6]	T	G	3.118e^-4	0.978	NON_SYNONYMOUS_CODING milt INTRON milt	TF binding site BDTNP1_TFBS_twi
3L	12055542	3L_12055542_INS [dm3] 3L_12062442_INS [dm6]	C	TT	3.120e^-4	0.978	INTRON rols	TF binding site BDTNP1_TFBS_da
3L	15959500	3L_15959500_SNP [dm3] 3L_15966400_SNP [dm6]	C	A	3.122e^-4	0.978	SYNONYMOUS_CODING l_3_72Ab	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	11143043	X_11143043_SNP [dm3] X_11249010_SNP [dm6]	G	C	3.136e^-4	0.978	DOWNSTREAM CG15198 INTRON CG44422
3L	20349239	3L_20349239_SNP [dm3] 3L_20356139_SNP [dm6]	C	T	3.136e^-4	0.978	SYNONYMOUS_CODING CG5618 UPSTREAM kin17	TF binding site mE1_TFBS_sens
X	19600727	X_19600727_INS [dm3] X_19706694_INS [dm6]	T	TGT	3.137e^-4	0.978	UTR_3_PRIME meso18E DOWNSTREAM CG14230	TF binding site mE1_TFBS_HSA
2L	13710139	2L_13710139_SNP [dm3] 2L_13710139_SNP [dm6]	G	C	3.139e^-4	0.978	NON_SYNONYMOUS_CODING CG7311 UTR_3_PRIME CG7311 INTRON CG31814	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	3882297	2R_3882297_SNP [dm3] 2R_7994792_SNP [dm6]	T	A	3.152e^-4	0.978	NON_SYNONYMOUS_CODING Dic3 DOWNSTREAM Hey	TF binding site mE1_TFBS_cad
3R	10442203	3R_10442203_SNP [dm3] 3R_14616481_SNP [dm6]	G	T	3.154e^-4	0.978	INTRON CG14853
3R	17701839	3R_17701839_SNP [dm3] 3R_21876117_SNP [dm6]	T	G	3.156e^-4	0.978	INTRON CG6656
2R	12403585	2R_12403585_SNP [dm3] 2R_16516080_SNP [dm6]	G	T	3.159e^-4	0.978	UPSTREAM Sema-2a INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_zfh1
X	18232497	X_18232497_SNP [dm3] X_18338464_SNP [dm6]	C	T	3.161e^-4	0.978	INTRON CG6123
3R	19906382	3R_19906382_DEL [dm3] 3R_24080660_DEL [dm6]	AATATCAATTTATTATCTAC...	A	3.170e^-4	0.978	INTRON 4EHP
X	13684238	X_13684238_SNP [dm3] X_13790205_SNP [dm6]	T	G	3.170e^-4	0.978	DOWNSTREAM CG10993 INTRON inaE
3R	27024592	3R_27024592_SNP [dm3] 3R_31198870_SNP [dm6]	A	C	3.177e^-4	0.978	INTRON CG1544	TF binding site mE1_TFBS_HSA
2R	16115345	2R_16115345_SNP [dm3] 2R_20227840_SNP [dm6]	G	A	3.177e^-4	0.978	INTERGENIC
3R	26290210	3R_26290210_SNP [dm3] 3R_30464488_SNP [dm6]	G	T	3.181e^-4	0.978	INTRON CDase
3R	20184455	3R_20184455_SNP [dm3] 3R_24358733_SNP [dm6]	A	G	3.214e^-4	0.986	SYNONYMOUS_CODING CG18528 UPSTREAM Golgin84	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11436929	3L_11436929_SNP [dm3] 3L_11443829_SNP [dm6]	A	T	3.236e^-4	0.991	DOWNSTREAM CR44549 INTERGENIC
X	13462392	X_13462392_SNP [dm3] X_13568359_SNP [dm6]	T	A	3.239e^-4	0.991	INTRON Tango13
2L	5388990	2L_5388990_SNP [dm3] 2L_5388990_SNP [dm6]	G	A	3.246e^-4	0.992	DOWNSTREAM CR44745 INTERGENIC
3L	7818462	3L_7818462_SNP [dm3] 3L_7825362_SNP [dm6]	A	C	3.252e^-4	0.992	INTRON Pdp1
3L	20375632	3L_20375632_SNP [dm3] 3L_20382532_SNP [dm6]	G	A	3.259e^-4	0.992	NON_SYNONYMOUS_CODING CG5498 DOWNSTREAM RhoBTB
X	1958585	X_1958585_SNP [dm3] X_2064552_SNP [dm6]	T	C	3.275e^-4	0.993	SYNONYMOUS_CODING CG4281 UPSTREAM CR44381 DOWNSTREAM CG14054	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	19438651	2R_19438651_SNP [dm3] 2R_23551128_SNP [dm6]	A	C	3.293e^-4	0.993	UTR_5_PRIME pita UPSTREAM Dcp-1 INTRON pita	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	22435304	3R_22435304_SNP [dm3] 3R_26609582_SNP [dm6]	C	T	3.295e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	548097	2L_548097_SNP [dm3] 2L_548097_SNP [dm6]	G	T	3.299e^-4	0.993	SYNONYMOUS_CODING Ets21C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19817860	3R_19817860_SNP [dm3] 3R_23992138_SNP [dm6]	A	G	3.306e^-4	0.993	SYNONYMOUS_CODING CG13604 UPSTREAM CG13604 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	1701456	X_1701456_SNP [dm3] X_1807423_SNP [dm6]	T	C	3.310e^-4	0.993	INTRON CG42666	TF binding site mE1_TFBS_chinmo
X	17628582	X_17628582_SNP [dm3] X_17734549_SNP [dm6]	A	G	3.315e^-4	0.993	INTRON CG42684	TF binding site BDTNP1_TFBS_dl
2R	18367534	2R_18367534_SNP [dm3] 2R_22480029_SNP [dm6]	G	A	3.316e^-4	0.993	SYNONYMOUS_CODING CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7618574	3L_7618574_SNP [dm3] 3L_7625474_SNP [dm6]	T	G	3.317e^-4	0.993	SYNONYMOUS_CODING CG33275	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	13220202	3R_13220202_SNP [dm3] 3R_17394480_SNP [dm6]	T	C	3.332e^-4	0.993	UPSTREAM CREG DOWNSTREAM Sur-8 INTRON CREG	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11705554	3L_11705554_SNP [dm3] 3L_11712454_SNP [dm6]	A	G	3.340e^-4	0.993	UTR_3_PRIME CG14132	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	19827402	2R_19827402_SNP [dm3] 2R_23939879_SNP [dm6]	T	C	3.349e^-4	0.993	UPSTREAM Tal & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	1931456	X_1931456_SNP [dm3] X_2037423_SNP [dm6]	T	C	3.363e^-4	0.993	UPSTREAM Actn INTRON Actn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	5061741	X_5061741_SNP [dm3] X_5167708_SNP [dm6]	A	T	3.368e^-4	0.993	INTRON rg & 1 other
2L	8956842	2L_8956842_SNP [dm3] 2L_8956842_SNP [dm6]	T	C	3.370e^-4	0.993	INTRON CG31886	TF binding site BDTNP1_TFBS_twi mE1_TFBS_zfh1
3R	13921445	3R_13921445_SNP [dm3] 3R_18095723_SNP [dm6]	C	T	3.371e^-4	0.993	SPLICE_SITE_REGION sr INTRON sr
3L	8161798	3L_8161798_SNP [dm3] 3L_8168698_SNP [dm6]	C	T	3.380e^-4	0.993	INTERGENIC
X	15014937	X_15014937_SNP [dm3] X_15120904_SNP [dm6]	G	C	3.385e^-4	0.993	INTERGENIC
3L	11780913	3L_11780913_SNP [dm3] 3L_11787813_SNP [dm6]	C	T	3.390e^-4	0.993	NON_SYNONYMOUS_CODING Pi3K68D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10931111	3L_10931111_SNP [dm3] 3L_10938011_SNP [dm6]	A	G	3.423e^-4	0.993	INTERGENIC
3R	17952342	3R_17952342_SNP [dm3] 3R_22126620_SNP [dm6]	T	C	3.429e^-4	0.993	INTRON CG42390
3L	8772739	3L_8772739_SNP [dm3] 3L_8779639_SNP [dm6]	C	T	3.434e^-4	0.993	INTRON Fhos	TF binding site mE1_TFBS_cad
2R	15259393	2R_15259393_SNP [dm3] 2R_19371888_SNP [dm6]	G	C	3.441e^-4	0.993	INTRON CG9416	TF binding site BDTNP1_TFBS_twi
3L	16431384	3L_16431384_SNP [dm3] 3L_16438284_SNP [dm6]	C	A	3.444e^-4	0.993	INTRON CG33158 & 1 other	TF binding site BDTNP1_TFBS_twi
3R	8552792	3R_8552792_SNP [dm3] 3R_12727070_SNP [dm6]	G	A	3.467e^-4	0.993	UPSTREAM CR44231 INTERGENIC
3R	17104370	3R_17104370_SNP [dm3] 3R_21278648_SNP [dm6]	A	G	3.492e^-4	0.993	UTR_3_PRIME SIFaR
X	16156173	X_16156173_SNP [dm3] X_16262140_SNP [dm6]	G	C	3.493e^-4	0.993	INTERGENIC
3R	10342046	3R_10342046_SNP [dm3] 3R_14516324_SNP [dm6]	G	C	3.515e^-4	0.993	SYNONYMOUS_CODING Pde6 UPSTREAM CG34273
3R	22877820	3R_22877820_SNP [dm3] 3R_27052098_SNP [dm6]	C	A	3.525e^-4	0.993	INTRON RYa-R
2R	3366069	2R_3366069_SNP [dm3] 2R_7478564_SNP [dm6]	A	G	3.528e^-4	0.993	DOWNSTREAM wech INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3R	12951621	3R_12951621_SNP [dm3] 3R_17125899_SNP [dm6]	T	A	3.531e^-4	0.993	UPSTREAM cher DOWNSTREAM CG17477 INTERGENIC	TF binding site mE1_TFBS_inv
2L	17368564	2L_17368564_SNP [dm3] 2L_17368564_SNP [dm6]	T	A	3.546e^-4	0.993	DOWNSTREAM Lrch INTRON Lrch	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	4896296	X_4896296_SNP [dm3] X_5002263_SNP [dm6]	T	C	3.547e^-4	0.993	INTRON CR44833	regulatory region REDfly_CRMs
2R	10178654	2R_10178654_SNP [dm3] 2R_14291149_SNP [dm6]	T	C	3.549e^-4	0.993	SYNONYMOUS_CODING Ih START_GAINED Ih UTR_5_PRIME Ih UPSTREAM Ih	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
X	1955732	X_1955732_SNP [dm3] X_2061699_SNP [dm6]	T	G	3.555e^-4	0.993	UTR_5_PRIME Sik2 DOWNSTREAM CG4281
X	15154262	X_15154262_SNP [dm3] X_15260229_SNP [dm6]	G	C	3.557e^-4	0.993	INTERGENIC
2L	2979350	2L_2979350_SNP [dm3] 2L_2979350_SNP [dm6]	A	G	3.565e^-4	0.993	UPSTREAM CG9643 DOWNSTREAM CG3165 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4248690	X_4248690_SNP [dm3] X_4354657_SNP [dm6]	T	A	3.567e^-4	0.993	INTRON norpA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	1939075	X_1939075_SNP [dm3] X_2045042_SNP [dm6]	C	G	3.571e^-4	0.993	UTR_3_PRIME moody INTRON CG4313
2R	12647652	2R_12647652_SNP [dm3] 2R_16760147_SNP [dm6]	T	C	3.581e^-4	0.993	SYNONYMOUS_CODING unc-104	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9423366	2R_9423366_SNP [dm3] 2R_13535861_SNP [dm6]	C	T	3.581e^-4	0.993	DOWNSTREAM tRNA:K2:50C INTERGENIC
3R	11598642	3R_11598642_SNP [dm3] 3R_15772920_SNP [dm6]	T	A	3.596e^-4	0.993	INTERGENIC
3L	1543420	3L_1543420_SNP [dm3] 3L_1543420_SNP [dm6]	C	T	3.597e^-4	0.993	SYNONYMOUS_CODING CG7852 UTR_3_PRIME CG7852
X	1707645	X_1707645_SNP [dm3] X_1813612_SNP [dm6]	G	C	3.601e^-4	0.993	INTRON CG42666
2R	13049990	2R_13049990_SNP [dm3] 2R_17162485_SNP [dm6]	G	C	3.603e^-4	0.993	INTERGENIC
X	15009717	X_15009717_SNP [dm3] X_15115684_SNP [dm6]	G	A	3.605e^-4	0.993	SYNONYMOUS_CODING Cyp4s3
3L	9366859	3L_9366859_SNP [dm3] 3L_9373759_SNP [dm6]	G	T	3.608e^-4	0.993	UTR_5_PRIME Hsp22 UTR_3_PRIME Hsp67Bb UPSTREAM Hsp22 DOWNSTREAM Hsp67Bb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2R	18563878	2R_18563878_SNP [dm3] 2R_22676373_SNP [dm6]	A	G	3.621e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	9752503	3R_9752503_SNP [dm3] 3R_13926781_SNP [dm6]	G	A	3.626e^-4	0.993	INTERGENIC
2R	19438275	2R_19438275_SNP [dm3] 2R_23550752_SNP [dm6]	C	T	3.628e^-4	0.993	SYNONYMOUS_CODING pita UPSTREAM Dcp-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
3R	17558385	3R_17558385_SNP [dm3] 3R_21732663_SNP [dm6]	G	C	3.636e^-4	0.993	INTERGENIC
2R	10625161	2R_10625161_SNP [dm3] 2R_14737656_SNP [dm6]	C	T	3.643e^-4	0.993	EXON CR43428
3R	7634498	3R_7634498_SNP [dm3] 3R_11808776_SNP [dm6]	A	G	3.651e^-4	0.993	INTRON ClC-a	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2R	20935288	2R_20935288_SNP [dm3] 2R_25047765_SNP [dm6]	G	A	3.651e^-4	0.993	INTRON gsb-n	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
2R	20229469	2R_20229469_SNP [dm3] 2R_24341946_SNP [dm6]	G	A	3.659e^-4	0.993	UPSTREAM bs INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3089948	2L_3089948_SNP [dm3] 2L_3089948_SNP [dm6]	T	C	3.661e^-4	0.993	NON_SYNONYMOUS_CODING toc INTRON toc
3L	11705159	3L_11705159_SNP [dm3] 3L_11712059_SNP [dm6]	A	C	3.666e^-4	0.993	UPSTREAM crim DOWNSTREAM CG14132 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	14588175	3R_14588175_DEL [dm3] 3R_18762453_DEL [dm6]	GGGG	G	3.669e^-4	0.993	INTRON CG7720	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	2794237	3L_2794237_SNP [dm3] 3L_2794237_SNP [dm6]	T	C	3.670e^-4	0.993	SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18174178	2L_18174178_SNP [dm3] 2L_18174178_SNP [dm6]	C	T	3.678e^-4	0.993	INTRON CG42750
2L	13997245	2L_13997245_SNP [dm3] 2L_13997245_SNP [dm6]	G	T	3.693e^-4	0.993	INTRON rk
3L	10355353	3L_10355353_SNP [dm3] 3L_10362253_SNP [dm6]	T	A	3.693e^-4	0.993	EXON CR44327	TF binding site BDTNP1_TFBS_dl
3R	20195736	3R_20195736_SNP [dm3] 3R_24370014_SNP [dm6]	C	T	3.695e^-4	0.993	SYNONYMOUS_CODING CG13614 DOWNSTREAM CG33341 & 1 other
X	22220479	X_22220479_SNP [dm3] X_22818643_SNP [dm6]	T	C	3.700e^-4	0.993	INTERGENIC
3R	16846236	3R_16846236_SNP [dm3] 3R_21020514_SNP [dm6]	G	T	3.704e^-4	0.993	UTR_3_PRIME Rlip DOWNSTREAM CG17278
3R	12258550	3R_12258550_SNP [dm3] 3R_16432828_SNP [dm6]	T	A	3.711e^-4	0.993	UTR_3_PRIME CG31279 UPSTREAM CG17565 DOWNSTREAM tRNA:CR31282
3L	22576412	3L_22576412_SNP [dm3] 3L_22583312_SNP [dm6]	A	G	3.718e^-4	0.993	NON_SYNONYMOUS_CODING CG14459	TF binding site mE1_TFBS_HSA
3L	3786924	3L_3786924_SNP [dm3] 3L_3786924_SNP [dm6]	G	A	3.731e^-4	0.993	INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	13044388	2L_13044388_SNP [dm3] 2L_13044388_SNP [dm6]	G	A	3.734e^-4	0.993	INTRON CG9932
3R	20182651	3R_20182651_SNP [dm3] 3R_24356929_SNP [dm6]	T	A	3.754e^-4	0.993	SYNONYMOUS_CODING Golgin84 DOWNSTREAM CG6454	TF binding site mE1_TFBS_sens
2L	10063625	2L_10063625_SNP [dm3] 2L_10063625_SNP [dm6]	C	T	3.771e^-4	0.993	NON_SYNONYMOUS_CODING Spn31A DOWNSTREAM CG44153
3L	22307725	3L_22307725_SNP [dm3] 3L_22314625_SNP [dm6]	G	T	3.778e^-4	0.993	INTRON Ten-m
3L	18306580	3L_18306580_SNP [dm3] 3L_18313480_SNP [dm6]	G	A	3.786e^-4	0.993	INTERGENIC
2R	18474638	2R_18474638_SNP [dm3] 2R_22587133_SNP [dm6]	T	C	3.798e^-4	0.993	INTRON dnr1
X	13231251	X_13231251_DEL [dm3] X_13337218_DEL [dm6]	AACA	A	3.803e^-4	0.993	INTRON RpS15Aa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	4911489	2L_4911489_SNP [dm3] 2L_4911489_SNP [dm6]	A	G	3.811e^-4	0.993	SYNONYMOUS_CODING hoe1 UTR_5_PRIME hoe1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13766745	2L_13766745_SNP [dm3] 2L_13766745_SNP [dm6]	T	C	3.813e^-4	0.993	INTRON TM9SF4
3R	20477360	3R_20477360_SNP [dm3] 3R_24651638_SNP [dm6]	C	A	3.815e^-4	0.993	INTRON ash2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	20069852	2L_20069852_SNP [dm3] 2L_20069852_SNP [dm6]	G	A	3.819e^-4	0.993	UPSTREAM CR44907 DOWNSTREAM CG10730 INTRON bwa	TF binding site mE1_TFBS_cad
2L	17366998	2L_17366998_SNP [dm3] 2L_17366998_SNP [dm6]	T	A	3.825e^-4	0.993	DOWNSTREAM Lrch INTERGENIC
3R	12268927	3R_12268927_SNP [dm3] 3R_16443205_SNP [dm6]	G	T	3.826e^-4	0.993	UPSTREAM CG14882 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
2R	17421228	2R_17421228_SNP [dm3] 2R_21533723_SNP [dm6]	G	C	3.827e^-4	0.993	INTRON Egfr
3L	1289729	3L_1289729_SNP [dm3] 3L_1289729_SNP [dm6]	C	A	3.827e^-4	0.993	INTRON CG32333
3L	12977661	3L_12977661_SNP [dm3] 3L_12984561_SNP [dm6]	G	C	3.830e^-4	0.993	INTERGENIC
2R	9781407	2R_9781407_SNP [dm3] 2R_13893902_SNP [dm6]	C	T	3.833e^-4	0.993	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	20490699	3L_20490699_SNP [dm3] 3L_20497599_SNP [dm6]	T	A	3.834e^-4	0.993	UTR_5_PRIME CG32425 DOWNSTREAM CG6020 INTRON CG32425	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	8488961	3L_8488961_SNP [dm3] 3L_8495861_SNP [dm6]	T	C	3.840e^-4	0.993	INTRON CG43163
X	15009726	X_15009726_SNP [dm3] X_15115693_SNP [dm6]	A	T	3.846e^-4	0.993	SYNONYMOUS_CODING Cyp4s3
2L	7743118	2L_7743118_SNP [dm3] 2L_7743118_SNP [dm6]	T	G	3.857e^-4	0.993	DOWNSTREAM CG7214 INTERGENIC
3L	2868231	3L_2868231_SNP [dm3] 3L_2868231_SNP [dm6]	A	G	3.860e^-4	0.993	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
X	11086253	X_11086253_SNP [dm3] X_11192220_SNP [dm6]	C	G	3.861e^-4	0.993	UPSTREAM CR44765 INTERGENIC
3L	20494860	3L_20494860_SNP [dm3] 3L_20501760_SNP [dm6]	G	A	3.863e^-4	0.993	DOWNSTREAM CG18281 INTRON CG32425	transposable element FlyBase
X	5856547	X_5856547_SNP [dm3] X_5962514_SNP [dm6]	T	C	3.863e^-4	0.993	SYNONYMOUS_CODING fs_1_M3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17038205	2R_17038205_SNP [dm3] 2R_21150700_SNP [dm6]	C	A	3.869e^-4	0.993	SYNONYMOUS_CODING CG30389
2R	17760233	2R_17760233_SNP [dm3] 2R_21872728_SNP [dm6]	T	A	3.870e^-4	0.993	INTRON Fili	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	23401762	3R_23401762_INS [dm3] 3R_27576040_INS [dm6]	A	AA	3.885e^-4	0.993	INTRON wdb
X	19343302	X_19343302_SNP [dm3] X_19449269_SNP [dm6]	G	A	3.889e^-4	0.993	INTRON kek5
X	1937111	X_1937111_SNP [dm3] X_2043078_SNP [dm6]	G	A	3.900e^-4	0.993	NON_SYNONYMOUS_CODING CG4325 UPSTREAM Actn & 1 other INTRON CG4313	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	17952383	3R_17952383_DEL [dm3] 3R_22126661_DEL [dm6]	GTATT	A	3.901e^-4	0.993	INTRON CG42390
3L	4054818	3L_4054818_SNP [dm3] 3L_4054818_SNP [dm6]	A	G	3.906e^-4	0.993	INTRON CG1136
2R	11838301	2R_11838301_SNP [dm3] 2R_15950796_SNP [dm6]	A	C	3.911e^-4	0.993	UTR_5_PRIME Strn-Mlck DOWNSTREAM Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_HSA
3R	20472931	3R_20472931_SNP [dm3] 3R_24647209_SNP [dm6]	A	G	3.916e^-4	0.993	SYNONYMOUS_CODING puf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	13230600	X_13230600_INS [dm3] X_13336567_INS [dm6]	C	CAAC	3.934e^-4	0.993	INTRON RpS15Aa	TF binding site mE1_TFBS_GATAe
X	7503731	X_7503731_SNP [dm3] X_7609698_SNP [dm6]	C	T	3.934e^-4	0.993	INTRON ct	TF binding site BDTNP1_TFBS_z
X	1006360	X_1006360_SNP [dm3] X_1112327_SNP [dm6]	T	C	3.936e^-4	0.993	INTRON CG3655
3L	4635993	3L_4635993_SNP [dm3] 3L_4635993_SNP [dm6]	A	C	3.936e^-4	0.993	DOWNSTREAM axo INTRON axo	TF binding site mE1_TFBS_hkb
4	415202	4_415202_SNP [dm3] 4_394576_SNP [dm6]	T	A	3.936e^-4	0.993	UTR_5_PRIME Lin29 UPSTREAM CR44027	TF binding site BDTNP1_TFBS_dl
3L	8161891	3L_8161891_SNP [dm3] 3L_8168791_SNP [dm6]	A	T	3.937e^-4	0.993	INTERGENIC
2R	13957818	2R_13957818_SNP [dm3] 2R_18070313_SNP [dm6]	C	A	3.944e^-4	0.993	INTRON CG34386
X	1945120	X_1945120_DEL [dm3] X_2051087_DEL [dm6]	CA	C	3.946e^-4	0.993	UPSTREAM moody INTRON CG4313	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	16768797	2R_16768797_SNP [dm3] 2R_20881292_SNP [dm6]	A	C	3.952e^-4	0.993	INTRON Cib2	TF binding site mE1_TFBS_inv
X	5619924	X_5619924_SNP [dm3] X_5725891_SNP [dm6]	A	C	3.953e^-4	0.993	INTRON CG32758
3L	1111458	3L_1111458_SNP [dm3] 3L_1111458_SNP [dm6]	A	T	3.956e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8770554	2L_8770554_SNP [dm3] 2L_8770554_SNP [dm6]	A	G	3.956e^-4	0.993	SYNONYMOUS_CODING CG9465	TF binding site mE1_TFBS_sens
3L	1034709	3L_1034709_SNP [dm3] 3L_1034709_SNP [dm6]	C	A	3.962e^-4	0.993	UTR_5_PRIME trio & 1 other UPSTREAM CG9205 INTRON trio	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
2L	9186088	2L_9186088_SNP [dm3] 2L_9186088_SNP [dm6]	T	G	3.964e^-4	0.993	INTRON tai	TF binding site BDTNP1_TFBS_prd
3L	11947219	3L_11947219_SNP [dm3] 3L_11954119_SNP [dm6]	A	G	3.969e^-4	0.993	UTR_5_PRIME CG7248 UPSTREAM obst-G
X	13228989	X_13228989_SNP [dm3] X_13334956_SNP [dm6]	A	G	3.972e^-4	0.993	DOWNSTREAM RpS15Aa INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	16923453	2R_16923453_SNP [dm3] 2R_21035948_SNP [dm6]	A	G	3.987e^-4	0.993	INTERGENIC
3L	7469404	3L_7469404_DEL [dm3] 3L_7476304_DEL [dm6]	ACGT	A	3.990e^-4	0.993	DOWNSTREAM CG43292 INTERGENIC
3L	13129512	3L_13129512_SNP [dm3] 3L_13136412_SNP [dm6]	A	T	3.994e^-4	0.993	INTRON CG33262	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4991180	2R_4991180_INS [dm3] 2R_9103675_INS [dm6]	G	GTCAGTGGCG	4.009e^-4	0.993	DOWNSTREAM CG8777	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	17563993	3R_17563993_SNP [dm3] 3R_21738271_SNP [dm6]	T	A	4.010e^-4	0.993	UPSTREAM CG42870 DOWNSTREAM CG34034 INTERGENIC
3R	26979401	3R_26979401_SNP [dm3] 3R_31153679_SNP [dm6]	G	A	4.012e^-4	0.993	INTRON Gycbeta100B
3L	7470026	3L_7470026_SNP [dm3] 3L_7476926_SNP [dm6]	T	A	4.021e^-4	0.993	DOWNSTREAM CG43292 INTERGENIC
3R	22231367	3R_22231367_SNP [dm3] 3R_26405645_SNP [dm6]	G	A	4.022e^-4	0.993	INTERGENIC
3R	16730998	3R_16730998_SNP [dm3] 3R_20905276_SNP [dm6]	G	A	4.029e^-4	0.993	SYNONYMOUS_CODING TotX INTRON CG5621
3R	10458071	3R_10458071_SNP [dm3] 3R_14632349_SNP [dm6]	A	G	4.043e^-4	0.993	INTRON CG7886 & 1 other
2L	7112413	2L_7112413_SNP [dm3] 2L_7112413_SNP [dm6]	T	C	4.047e^-4	0.993	INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13462359	X_13462359_SNP [dm3] X_13568326_SNP [dm6]	C	A	4.056e^-4	0.993	INTRON Tango13
X	8142374	X_8142374_SNP [dm3] X_8248341_SNP [dm6]	A	T	4.056e^-4	0.993	DOWNSTREAM ND75 & 1 other INTERGENIC
3L	8299930	3L_8299930_SNP [dm3] 3L_8306830_SNP [dm6]	T	C	4.062e^-4	0.993	NON_SYNONYMOUS_CODING Gr66a DOWNSTREAM BI-1
3L	13008685	3L_13008685_SNP [dm3] 3L_13015585_SNP [dm6]	C	T	4.073e^-4	0.993	UPSTREAM CG11267 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
X	16025223	X_16025223_SNP [dm3] X_16131190_SNP [dm6]	T	A	4.075e^-4	0.993	INTRON disco-r
2R	6671683	2R_6671683_DEL [dm3] 2R_10784178_DEL [dm6]	TATAATAAATAATA...	T	4.083e^-4	0.993	INTRON CG33144 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	19827348	2R_19827348_SNP [dm3] 2R_23939825_SNP [dm6]	C	T	4.084e^-4	0.993	UPSTREAM Tal & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	5743094	X_5743094_SNP [dm3] X_5849061_SNP [dm6]	G	A	4.089e^-4	0.993	INTERGENIC
X	8473314	X_8473314_SNP [dm3] X_8579281_SNP [dm6]	A	T	4.090e^-4	0.993	INTRON CG12065
2L	9989071	2L_9989071_SNP [dm3] 2L_9989071_SNP [dm6]	A	G	4.093e^-4	0.993	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14070202	3L_14070202_INS [dm3] 3L_14077102_INS [dm6]	T	TTCGCTCGATT...	4.097e^-4	0.993	UTR_5_PRIME btl DOWNSTREAM Pex1 INTRON btl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16157419	2R_16157419_SNP [dm3] 2R_20269914_SNP [dm6]	C	T	4.108e^-4	0.993	NON_SYNONYMOUS_CODING CG8908	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7469413	3L_7469413_DEL [dm3] 3L_7476313_DEL [dm6]	TTTCC	T	4.109e^-4	0.993	DOWNSTREAM CG43292 INTERGENIC
3R	25219377	3R_25219377_SNP [dm3] 3R_29393655_SNP [dm6]	T	A	4.109e^-4	0.993	INTRON Ptp99A
2L	5447887	2L_5447887_SNP [dm3] 2L_5447887_SNP [dm6]	A	C	4.113e^-4	0.993	INTERGENIC
3R	11598605	3R_11598605_SNP [dm3] 3R_15772883_SNP [dm6]	T	A	4.114e^-4	0.993	INTERGENIC
2R	13957861	2R_13957861_SNP [dm3] 2R_18070356_SNP [dm6]	T	A	4.123e^-4	0.993	INTRON CG34386
X	8615251	X_8615251_SNP [dm3] X_8721218_SNP [dm6]	T	C	4.127e^-4	0.993	UPSTREAM l_1_G0020 INTRON CG1789	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
X	13229307	X_13229307_SNP [dm3] X_13335274_SNP [dm6]	C	T	4.128e^-4	0.993	DOWNSTREAM RpS15Aa INTERGENIC	TF binding site mE1_TFBS_kn
3L	6962523	3L_6962523_SNP [dm3] 3L_6969423_SNP [dm6]	A	C	4.129e^-4	0.993	UPSTREAM CG9953 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_ttk mE1_TFBS_Ubx
X	8142385	X_8142385_SNP [dm3] X_8248352_SNP [dm6]	A	G	4.130e^-4	0.993	DOWNSTREAM ND75 & 1 other INTERGENIC
3R	10435793	3R_10435793_INS [dm3] 3R_14610071_INS [dm6]	A	ATTAC	4.134e^-4	0.993	UTR_5_PRIME CG14853	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	10439216	3R_10439216_SNP [dm3] 3R_14613494_SNP [dm6]	C	G	4.134e^-4	0.993	UPSTREAM CG14853 INTRON CG14853
3R	10439241	3R_10439241_SNP [dm3] 3R_14613519_SNP [dm6]	A	T	4.134e^-4	0.993	UPSTREAM CG14853 INTRON CG14853
3R	10439770	3R_10439770_SNP [dm3] 3R_14614048_SNP [dm6]	G	T	4.134e^-4	0.993	INTRON CG14853
3R	10440144	3R_10440144_DEL [dm3] 3R_14614422_DEL [dm6]	AGCAGTAAAC	A	4.134e^-4	0.993	INTRON CG14853
3R	10440160	3R_10440160_SNP [dm3] 3R_14614438_SNP [dm6]	T	C	4.134e^-4	0.993	INTRON CG14853
3R	10440161	3R_10440161_DEL [dm3] 3R_14614439_DEL [dm6]	GA	G	4.134e^-4	0.993	INTRON CG14853
3R	10447476	3R_10447476_SNP [dm3] 3R_14621754_SNP [dm6]	C	T	4.134e^-4	0.993	SYNONYMOUS_CODING put	TF binding site mE1_TFBS_sens
3R	10451193	3R_10451193_SNP [dm3] 3R_14625471_SNP [dm6]	C	T	4.134e^-4	0.993	START_GAINED put UTR_5_PRIME put UPSTREAM His4r	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	10451426	3R_10451426_SNP [dm3] 3R_14625704_SNP [dm6]	A	G	4.134e^-4	0.993	UPSTREAM His4r & 1 other DOWNSTREAM CG7886 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	10451975	3R_10451975_SNP [dm3] 3R_14626253_SNP [dm6]	A	G	4.134e^-4	0.993	UPSTREAM put DOWNSTREAM CG7886 INTRON His4r	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3R	10454624	3R_10454624_SNP [dm3] 3R_14628902_SNP [dm6]	A	G	4.134e^-4	0.993	SYNONYMOUS_CODING CG7886	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10455938	3R_10455938_SNP [dm3] 3R_14630216_SNP [dm6]	C	A	4.134e^-4	0.993	UPSTREAM Cad88C INTRON CG7886	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10458933	3R_10458933_SNP [dm3] 3R_14633211_SNP [dm6]	A	T	4.134e^-4	0.993	INTRON CG7886 & 1 other
3R	20538167	3R_20538167_SNP [dm3] 3R_24712445_SNP [dm6]	T	C	4.141e^-4	0.993	UPSTREAM CG13627 DOWNSTREAM slo INTERGENIC
2R	21131094	2R_21131094_SNP [dm3] 2R_25243571_SNP [dm6]	A	C	4.142e^-4	0.993	UTR_5_PRIME CG9380	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	13995727	3L_13995727_SNP [dm3] 3L_14002627_SNP [dm6]	T	C	4.147e^-4	0.993	UPSTREAM CG8783 INTRON upSET	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	4400727	2L_4400727_SNP [dm3] 2L_4400727_SNP [dm6]	T	G	4.156e^-4	0.994	UPSTREAM CG33003 DOWNSTREAM l_2_k05819 INTERGENIC	TF binding site mE1_TFBS_cad
2L	7028563	2L_7028563_SNP [dm3] 2L_7028563_SNP [dm6]	A	G	4.169e^-4	0.994	SYNONYMOUS_CODING CG3476
2L	6847150	2L_6847150_SNP [dm3] 2L_6847150_SNP [dm6]	A	C	4.176e^-4	0.994	INTERGENIC
2L	2851118	2L_2851118_SNP [dm3] 2L_2851118_SNP [dm6]	C	T	4.192e^-4	0.994	INTRON CG3104
3L	8069417	3L_8069417_SNP [dm3] 3L_8076317_SNP [dm6]	C	T	4.192e^-4	0.994	INTRON Ect4
2R	9574321	2R_9574321_SNP [dm3] 2R_13686816_SNP [dm6]	G	T	4.199e^-4	0.994	INTRON fas
X	3791436	X_3791436_SNP [dm3] X_3897403_SNP [dm6]	C	A	4.200e^-4	0.994	INTRON CG42541
X	14458000	X_14458000_SNP [dm3] X_14563967_SNP [dm6]	G	C	4.204e^-4	0.994	INTERGENIC
2L	14013014	2L_14013014_SNP [dm3] 2L_14013014_SNP [dm6]	A	C	4.205e^-4	0.994	UTR_5_PRIME bgm UPSTREAM bgm
3L	11150944	3L_11150944_SNP [dm3] 3L_11157844_SNP [dm6]	G	T	4.210e^-4	0.994	INTRON CG32082	TF binding site BDTNP1_TFBS_prd
3R	19165361	3R_19165361_INS [dm3] 3R_23339639_INS [dm6]	G	GTGATCAGCGAAAG...	4.220e^-4	0.994	INTRON pnt
3L	20352200	3L_20352200_SNP [dm3] 3L_20359100_SNP [dm6]	G	C	4.220e^-4	0.994	SYNONYMOUS_CODING CG5665 DOWNSTREAM kin17 & 1 other	TF binding site mE1_TFBS_HSA
2L	19316630	2L_19316630_SNP [dm3] 2L_19316630_SNP [dm6]	C	A	4.220e^-4	0.994	INTERGENIC
3R	16828116	3R_16828116_SNP [dm3] 3R_21002394_SNP [dm6]	C	T	4.226e^-4	0.994	INTRON Calx
2L	13114489	2L_13114489_SNP [dm3] 2L_13114489_SNP [dm6]	C	T	4.237e^-4	0.996	INTERGENIC
3R	10457222	3R_10457222_SNP [dm3] 3R_14631500_SNP [dm6]	A	C	4.248e^-4	0.996	INTRON CG7886 & 1 other
3L	5632313	3L_5632313_SNP [dm3] 3L_5639213_SNP [dm6]	A	T	4.251e^-4	0.996	INTRON Blimp-1
2L	14522799	2L_14522799_SNP [dm3] 2L_14522799_SNP [dm6]	G	C	4.256e^-4	0.996	INTERGENIC
3L	20550655	3L_20550655_SNP [dm3] 3L_20557555_SNP [dm6]	G	A	4.259e^-4	0.996	INTERGENIC
X	1939807	X_1939807_SNP [dm3] X_2045774_SNP [dm6]	C	G	4.274e^-4	0.996	NON_SYNONYMOUS_CODING moody SYNONYMOUS_CODING moody INTRON CG4313	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10451395	3R_10451395_SNP [dm3] 3R_14625673_SNP [dm6]	G	A	4.274e^-4	0.996	START_GAINED put UTR_5_PRIME put UPSTREAM His4r	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	11705703	3L_11705703_SNP [dm3] 3L_11712603_SNP [dm6]	C	T	4.275e^-4	0.996	SYNONYMOUS_STOP CG14132	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	20335894	3L_20335894_SNP [dm3] 3L_20342794_SNP [dm6]	A	G	4.282e^-4	0.996	NON_SYNONYMOUS_CODING Spn77Bc
2L	19317938	2L_19317938_SNP [dm3] 2L_19317938_SNP [dm6]	T	A	4.286e^-4	0.996	INTERGENIC
X	15009732	X_15009732_SNP [dm3] X_15115699_SNP [dm6]	G	A	4.298e^-4	0.998	SYNONYMOUS_CODING Cyp4s3
2R	18389794	2R_18389794_SNP [dm3] 2R_22502289_SNP [dm6]	C	A	4.306e^-4	0.998	INTRON px
2L	10065887	2L_10065887_SNP [dm3] 2L_10065887_SNP [dm6]	C	T	4.324e^-4	0.998	NON_SYNONYMOUS_CODING CG44153	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17561697	2R_17561697_SNP [dm3] 2R_21674192_SNP [dm6]	A	C	4.349e^-4	0.998	UPSTREAM CG30263 INTERGENIC
X	1699199	X_1699199_INS [dm3] X_1805166_INS [dm6]	A	AGGAGCA	4.363e^-4	0.998	INTRON CG42666	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	20244999	X_20244999_DEL [dm3] X_20373972_DEL [dm6]	AGTGGGAGCCTCAAT...	A	4.367e^-4	0.998	INTERGENIC
2L	10524745	2L_10524745_SNP [dm3] 2L_10524745_SNP [dm6]	T	C	4.368e^-4	0.998	INTERGENIC
2R	16758526	2R_16758526_SNP [dm3] 2R_20871021_SNP [dm6]	A	G	4.368e^-4	0.998	DOWNSTREAM IM14 INTRON Ipk1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2R	18924155	2R_18924155_SNP [dm3] 2R_23036632_SNP [dm6]	G	A	4.369e^-4	0.998	INTRON twi & 1 other	TF binding site mE1_TFBS_inv
3L	20399381	3L_20399381_SNP [dm3] 3L_20406281_SNP [dm6]	T	C	4.374e^-4	0.998	DOWNSTREAM CG13248 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3L	12428301	3L_12428301_SNP [dm3] 3L_12435201_SNP [dm6]	C	A	4.386e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z
2R	12354711	2R_12354711_SNP [dm3] 2R_16467206_SNP [dm6]	G	A	4.391e^-4	0.998	SPLICE_SITE_REGION CheB53a INTRON CheB53a
3L	6353606	3L_6353606_SNP [dm3] 3L_6360506_SNP [dm6]	G	T	4.391e^-4	0.998	INTERGENIC	TF binding site mE1_TFBS_inv
3R	4093381	3R_4093381_SNP [dm3] 3R_8267659_SNP [dm6]	T	C	4.395e^-4	0.998	SYNONYMOUS_CODING Mcm2 DOWNSTREAM CG9630
2R	17270607	2R_17270607_SNP [dm3] 2R_21383102_SNP [dm6]	T	A	4.404e^-4	0.998	DOWNSTREAM CG10795 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19225917	3R_19225917_SNP [dm3] 3R_23400195_SNP [dm6]	C	T	4.405e^-4	0.998	UPSTREAM CR44323 INTERGENIC
3L	8065946	3L_8065946_SNP [dm3] 3L_8072846_SNP [dm6]	T	A	4.407e^-4	0.998	INTRON Ect4
3L	15178661	3L_15178661_SNP [dm3] 3L_15185561_SNP [dm6]	T	A	4.410e^-4	0.998	INTERGENIC
3L	17772541	3L_17772541_SNP [dm3] 3L_17779441_SNP [dm6]	A	G	4.423e^-4	0.998	INTERGENIC
2L	6977754	2L_6977754_SNP [dm3] 2L_6977754_SNP [dm6]	A	G	4.434e^-4	0.998	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5219193	2R_5219193_SNP [dm3] 2R_9331688_SNP [dm6]	A	G	4.436e^-4	0.998	INTRON CG13954 & 1 other
2R	5219209	2R_5219209_SNP [dm3] 2R_9331704_SNP [dm6]	A	T	4.436e^-4	0.998	INTRON CG13954 & 1 other
2R	5219232	2R_5219232_SNP [dm3] 2R_9331727_SNP [dm6]	T	A	4.436e^-4	0.998	INTRON CG13954 & 1 other
3L	11589167	3L_11589167_SNP [dm3] 3L_11596067_SNP [dm6]	T	A	4.444e^-4	0.998	INTERGENIC
3L	8489022	3L_8489022_SNP [dm3] 3L_8495922_SNP [dm6]	C	A	4.445e^-4	0.998	INTRON CG43163
3L	20477956	3L_20477956_SNP [dm3] 3L_20484856_SNP [dm6]	T	C	4.445e^-4	0.998	SYNONYMOUS_CODING ZnT77C
2R	16402627	2R_16402627_SNP [dm3] 2R_20515122_SNP [dm6]	A	T	4.491e^-4	0.998	INTERGENIC
3L	15119991	3L_15119991_SNP [dm3] 3L_15126891_SNP [dm6]	G	C	4.494e^-4	0.998	INTRON Cep135
3L	8299918	3L_8299918_SNP [dm3] 3L_8306818_SNP [dm6]	A	G	4.499e^-4	0.998	SYNONYMOUS_CODING Gr66a DOWNSTREAM BI-1
3R	19777991	3R_19777991_SNP [dm3] 3R_23952269_SNP [dm6]	T	C	4.508e^-4	0.998	UTR_3_PRIME Aats-glupro	TF binding site mE1_TFBS_cad
3L	412029	3L_412029_SNP [dm3] 3L_412029_SNP [dm6]	C	A	4.525e^-4	0.998	INTERGENIC
2L	17368793	2L_17368793_SNP [dm3] 2L_17368793_SNP [dm6]	T	A	4.525e^-4	0.998	UTR_3_PRIME Lrch INTRON Lrch	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	19411574	2R_19411574_SNP [dm3] 2R_23524051_SNP [dm6]	T	C	4.528e^-4	0.998	UTR_5_PRIME mi UPSTREAM RabX1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
3R	21272173	3R_21272173_INS [dm3] 3R_25446451_INS [dm6]	A	ATCT	4.538e^-4	0.998	INTRON Fur1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17555001	3R_17555001_SNP [dm3] 3R_21729279_SNP [dm6]	C	A	4.550e^-4	0.998	DOWNSTREAM CR43096 INTERGENIC
2L	5802662	2L_5802662_SNP [dm3] 2L_5802662_SNP [dm6]	G	T	4.560e^-4	0.998	SYNONYMOUS_CODING CG7239 UPSTREAM CG14005	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16498544	2R_16498544_SNP [dm3] 2R_20611039_SNP [dm6]	G	T	4.572e^-4	0.998	INTRON Hil
3R	14273722	3R_14273722_SNP [dm3] 3R_18448000_SNP [dm6]	A	T	4.579e^-4	0.998	UPSTREAM fru INTRON fru	TF binding site BDTNP1_TFBS_dl
3L	20350415	3L_20350415_SNP [dm3] 3L_20357315_SNP [dm6]	C	G	4.581e^-4	0.998	NON_SYNONYMOUS_CODING kin17 DOWNSTREAM CG5618	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	17370030	2L_17370030_SNP [dm3] 2L_17370030_SNP [dm6]	A	T	4.586e^-4	0.998	UTR_3_PRIME Lrch INTRON Lrch
2R	17759018	2R_17759018_SNP [dm3] 2R_21871513_SNP [dm6]	T	A	4.616e^-4	0.998	UPSTREAM Fili INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	8168147	3R_8168147_SNP [dm3] 3R_12342425_SNP [dm6]	A	T	4.616e^-4	0.998	DOWNSTREAM CG44956 INTERGENIC
2L	5389020	2L_5389020_SNP [dm3] 2L_5389020_SNP [dm6]	T	A	4.619e^-4	0.998	DOWNSTREAM CR44745 INTERGENIC
3L	9413342	3L_9413342_SNP [dm3] 3L_9420242_SNP [dm6]	G	C	4.623e^-4	0.998	UPSTREAM CG3967 INTRON CG3967
3L	8299973	3L_8299973_SNP [dm3] 3L_8306873_SNP [dm6]	T	G	4.629e^-4	0.998	SYNONYMOUS_CODING Gr66a DOWNSTREAM BI-1
3R	20225351	3R_20225351_SNP [dm3] 3R_24399629_SNP [dm6]	T	A	4.634e^-4	0.998	UTR_3_PRIME nAChRalpha1	TF binding site mE1_TFBS_run
3R	10438279	3R_10438279_SNP [dm3] 3R_14612557_SNP [dm6]	T	C	4.661e^-4	0.998	INTRON CG14853
3L	11947268	3L_11947268_SNP [dm3] 3L_11954168_SNP [dm6]	T	C	4.669e^-4	0.998	UTR_5_PRIME CG7248 UPSTREAM obst-G
2L	4620494	2L_4620494_SNP [dm3] 2L_4620494_SNP [dm6]	C	G	4.672e^-4	0.998	EXON CR44609
3R	9815412	3R_9815412_SNP [dm3] 3R_13989690_SNP [dm6]	T	A	4.675e^-4	0.998	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1682469	3L_1682469_SNP [dm3] 3L_1682469_SNP [dm6]	A	T	4.678e^-4	0.998	INTRON CG7991
2R	5219222	2R_5219222_SNP [dm3] 2R_9331717_SNP [dm6]	A	T	4.678e^-4	0.998	INTRON CG13954 & 1 other
2R	7388057	2R_7388057_DEL [dm3] 2R_11500552_DEL [dm6]	AG	A	4.679e^-4	0.998	INTRON inv
3L	20375357	3L_20375357_SNP [dm3] 3L_20382257_SNP [dm6]	G	C	4.687e^-4	0.998	UTR_3_PRIME RhoBTB DOWNSTREAM CG5498	TF binding site BDTNP1_TFBS_dl
X	10965392	X_10965392_SNP [dm3] X_11071359_SNP [dm6]	C	T	4.692e^-4	0.998	DOWNSTREAM sev INTERGENIC
3L	7833886	3L_7833886_SNP [dm3] 3L_7840786_SNP [dm6]	C	A	4.700e^-4	0.998	INTRON Pdp1	regulatory region REDfly_CRMs
2L	15092176	2L_15092176_SNP [dm3] 2L_15092176_SNP [dm6]	A	C	4.704e^-4	0.998	SYNONYMOUS_CODING CG15270
3R	5355157	3R_5355157_SNP [dm3] 3R_9529435_SNP [dm6]	C	T	4.713e^-4	0.998	UTR_3_PRIME by INTRON by
3R	7684312	3R_7684312_SNP [dm3] 3R_11858590_SNP [dm6]	G	A	4.717e^-4	0.998	INTRON CG6959
2R	16852666	2R_16852666_SNP [dm3] 2R_20965161_SNP [dm6]	C	T	4.721e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	1956902	X_1956902_SNP [dm3] X_2062869_SNP [dm6]	T	C	4.736e^-4	0.998	NON_SYNONYMOUS_CODING CG4281 UPSTREAM Sik2	TF binding site mE1_TFBS_sens
3R	11695541	3R_11695541_SNP [dm3] 3R_15869819_SNP [dm6]	C	T	4.744e^-4	0.998	SYNONYMOUS_CODING CG31183	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5397939	3L_5397939_SNP [dm3] 3L_5404839_SNP [dm6]	A	G	4.745e^-4	0.998	INTERGENIC
3L	11950797	3L_11950797_SNP [dm3] 3L_11957697_SNP [dm6]	A	G	4.749e^-4	0.998	UPSTREAM CG43294 & 1 other DOWNSTREAM CG7248 INTRON CG11570
3L	20525254	3L_20525254_SNP [dm3] 3L_20532154_SNP [dm6]	A	G	4.754e^-4	0.998	INTRON Rcd2
3R	19144494	3R_19144494_SNP [dm3] 3R_23318772_SNP [dm6]	C	T	4.759e^-4	0.998	INTRON pnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9577353	3L_9577353_SNP [dm3] 3L_9584253_SNP [dm6]	A	G	4.762e^-4	0.998	INTRON CG42673
2R	8431229	2R_8431229_SNP [dm3] 2R_12543724_SNP [dm6]	C	A	4.766e^-4	0.998	INTRON fra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	13114560	2L_13114560_SNP [dm3] 2L_13114560_SNP [dm6]	C	A	4.766e^-4	0.998	INTERGENIC
X	8111005	X_8111005_INS [dm3] X_8216972_INS [dm6]	A	AAA	4.766e^-4	0.998	UTR_5_PRIME sdt INTRON sdt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23971142	3R_23971142_SNP [dm3] 3R_28145420_SNP [dm6]	A	T	4.775e^-4	0.998	INTERGENIC
2R	21066767	2R_21066767_SNP [dm3] 2R_25179244_SNP [dm6]	C	T	4.778e^-4	0.998	INTERGENIC
X	8612571	X_8612571_SNP [dm3] X_8718538_SNP [dm6]	G	A	4.779e^-4	0.998	SYNONYMOUS_CODING l_1_G0020	TF binding site mE1_TFBS_sens
2L	13114681	2L_13114681_DEL [dm3] 2L_13114681_DEL [dm6]	TT	T	4.787e^-4	0.998	INTERGENIC
3R	11593013	3R_11593013_SNP [dm3] 3R_15767291_SNP [dm6]	T	A	4.792e^-4	0.998	INTRON CG5623
2R	12403338	2R_12403338_DEL [dm3] 2R_16515833_DEL [dm6]	AATAATTTAA	A	4.794e^-4	0.998	UPSTREAM Sema-2a INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9431243	2L_9431243_DEL [dm3] 2L_9431243_DEL [dm6]	TA	T	4.798e^-4	0.998	UPSTREAM scat & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2162202	3L_2162202_SNP [dm3] 3L_2162202_SNP [dm6]	C	T	4.804e^-4	0.998	INTRON CG15822
3R	23413808	3R_23413808_SNP [dm3] 3R_27588086_SNP [dm6]	G	A	4.809e^-4	0.998	SYNONYMOUS_CODING CG5639	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	13228944	X_13228944_SNP [dm3] X_13334911_SNP [dm6]	G	A	4.810e^-4	0.998	DOWNSTREAM RpS15Aa INTERGENIC	TF binding site mE1_TFBS_kn
3L	7469429	3L_7469429_DEL [dm3] 3L_7476329_DEL [dm6]	GTTAA	G	4.810e^-4	0.998	DOWNSTREAM CG43292 INTERGENIC
3L	17749806	3L_17749806_SNP [dm3] 3L_17756706_SNP [dm6]	G	A	4.813e^-4	0.998	SYNONYMOUS_CODING Msi INTRON Adgf-A	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13009095	3L_13009095_SNP [dm3] 3L_13015995_SNP [dm6]	G	T	4.817e^-4	0.998	UPSTREAM CG11267 & 1 other INTERGENIC
3L	2315194	3L_2315194_SNP [dm3] 3L_2315194_SNP [dm6]	C	T	4.817e^-4	0.998	INTERGENIC
2R	11983762	2R_11983762_SNP [dm3] 2R_16096257_SNP [dm6]	C	T	4.817e^-4	0.998	INTRON Dg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3L	6631384	3L_6631384_SNP [dm3] 3L_6638284_SNP [dm6]	C	G	4.823e^-4	0.998	INTERGENIC
3L	9919159	3L_9919159_SNP [dm3] 3L_9926059_SNP [dm6]	T	C	4.828e^-4	0.998	INTRON CG34356	TF binding site mE1_TFBS_HSA
2R	21100583	2R_21100583_INS [dm3] 2R_25213060_INS [dm6]	G	GG	4.851e^-4	0.998	INTRON CG9380	regulatory region FlyBase TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	26071490	3R_26071490_SNP [dm3] 3R_30245768_SNP [dm6]	T	G	4.858e^-4	0.998	NON_SYNONYMOUS_CODING CG9733
4	287965	4_287965_SNP [dm3] 4_267339_SNP [dm6]	C	G	4.864e^-4	0.998	DOWNSTREAM NfI INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	17919207	3R_17919207_SNP [dm3] 3R_22093485_SNP [dm6]	G	A	4.866e^-4	0.998	INTRON CG5778
3L	1994750	3L_1994750_SNP [dm3] 3L_1994750_SNP [dm6]	A	G	4.877e^-4	0.998	INTERGENIC
2L	12481426	2L_12481426_DEL [dm3] 2L_12481426_DEL [dm6]	AGTACCCTGCTTATGCAAAC...	A	4.878e^-4	0.998	INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	13343184	2L_13343184_SNP [dm3] 2L_13343184_SNP [dm6]	C	A	4.883e^-4	0.998	INTERGENIC
2R	19749365	2R_19749365_SNP [dm3] 2R_23861842_SNP [dm6]	C	G	4.885e^-4	0.998	UTR_5_PRIME TBPH INTRON TBPH	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	18197405	2L_18197405_SNP [dm3] 2L_18197405_SNP [dm6]	T	G	4.886e^-4	0.998	INTRON CG42750
3L	8489011	3L_8489011_SNP [dm3] 3L_8495911_SNP [dm6]	C	T	4.887e^-4	0.998	INTRON CG43163
2L	10050536	2L_10050536_SNP [dm3] 2L_10050536_SNP [dm6]	G	A	4.894e^-4	0.998	SYNONYMOUS_CODING CG33301 UPSTREAM CR44874	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13954357	2R_13954357_SNP [dm3] 2R_18066852_SNP [dm6]	A	G	4.895e^-4	0.998	INTRON CG34386
3R	4832768	3R_4832768_SNP [dm3] 3R_9007046_SNP [dm6]	C	T	4.909e^-4	0.998	SYNONYMOUS_CODING CG11982 UPSTREAM Prosbeta3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12753509	2L_12753509_SNP [dm3] 2L_12753509_SNP [dm6]	T	C	4.924e^-4	0.998	INTERGENIC	transposable element FlyBase
2R	4138299	2R_4138299_SNP [dm3] 2R_8250794_SNP [dm6]	A	G	4.942e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16997623	2R_16997623_SNP [dm3] 2R_21110118_SNP [dm6]	C	T	4.943e^-4	0.998	INTRON ktub
X	10256223	X_10256223_SNP [dm3] X_10362190_SNP [dm6]	T	C	4.950e^-4	0.998	INTRON l_1_G0289	TF binding site mE1_TFBS_HSA
2R	19446759	2R_19446759_SNP [dm3] 2R_23559236_SNP [dm6]	C	A	4.951e^-4	0.998	INTRON ItgalphaPS5	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10513683	2R_10513683_DEL [dm3] 2R_14626178_DEL [dm6]	TATAAATTTCC...	T	4.963e^-4	0.998	INTERGENIC
3R	17564000	3R_17564000_SNP [dm3] 3R_21738278_SNP [dm6]	G	A	4.968e^-4	0.998	UPSTREAM CG42870 DOWNSTREAM CG34034 INTERGENIC
3R	22606061	3R_22606061_SNP [dm3] 3R_26780339_SNP [dm6]	A	T	4.989e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18367435	2R_18367435_SNP [dm3] 2R_22479930_SNP [dm6]	T	C	5.004e^-4	0.998	SYNONYMOUS_CODING CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13916882	2L_13916882_SNP [dm3] 2L_13916882_SNP [dm6]	G	A	5.006e^-4	0.998	INTRON Ance-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10965822	X_10965822_SNP [dm3] X_11071789_SNP [dm6]	G	A	5.010e^-4	0.998	SYNONYMOUS_CODING sev	TF binding site mE1_TFBS_chinmo
3R	20184470	3R_20184470_SNP [dm3] 3R_24358748_SNP [dm6]	A	G	5.010e^-4	0.998	SYNONYMOUS_CODING CG18528 UPSTREAM Golgin84	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	21880008	X_21880008_DEL [dm3] X_22478172_DEL [dm6]	AATAAGTAAT	GC	5.023e^-4	0.998	UPSTREAM CG12576 INTRON CG12576
2R	14658689	2R_14658689_SNP [dm3] 2R_18771184_SNP [dm6]	A	T	5.024e^-4	0.998	UPSTREAM Mctp DOWNSTREAM tRNA:CR30229 INTRON Mctp
3L	20350131	3L_20350131_SNP [dm3] 3L_20357031_SNP [dm6]	G	A	5.033e^-4	0.998	SYNONYMOUS_CODING kin17 DOWNSTREAM CG5618	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	7973001	X_7973001_SNP [dm3] X_8078968_SNP [dm6]	T	G	5.041e^-4	0.998	DOWNSTREAM CG1571 INTRON CG2254
3L	5587931	3L_5587931_SNP [dm3] 3L_5594831_SNP [dm6]	A	C	5.043e^-4	0.998	UPSTREAM CG5150 INTRON CG10592	TF binding site BDTNP1_TFBS_dl
3R	5694915	3R_5694915_INS [dm3] 3R_9869193_INS [dm6]	A	AA	5.059e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk
X	8610110	X_8610110_SNP [dm3] X_8716077_SNP [dm6]	C	A	5.075e^-4	0.998	NON_SYNONYMOUS_CODING CG1785 DOWNSTREAM l_1_G0020	TF binding site mE1_TFBS_sens
2R	3562553	2R_3562553_SNP [dm3] 2R_7675048_SNP [dm6]	T	G	5.076e^-4	0.998	SYNONYMOUS_CODING CG12107 UPSTREAM mRpL52 DOWNSTREAM U2A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	21127400	2R_21127400_SNP [dm3] 2R_25239877_SNP [dm6]	T	A	5.079e^-4	0.998	INTRON CG9380
3L	4697522	3L_4697522_SNP [dm3] 3L_4697522_SNP [dm6]	T	A	5.080e^-4	0.998	UPSTREAM CG13713 INTRON RhoGEF64C	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2R	12633014	2R_12633014_SNP [dm3] 2R_16745509_SNP [dm6]	A	G	5.087e^-4	0.998	UTR_3_PRIME CG15617 UPSTREAM Sfp53D	TF binding site mE1_TFBS_cad
3L	4631398	3L_4631398_SNP [dm3] 3L_4631398_SNP [dm6]	A	G	5.092e^-4	0.998	INTRON axo
3R	10291022	3R_10291022_SNP [dm3] 3R_14465300_SNP [dm6]	C	T	5.093e^-4	0.998	INTRON cv-c	TF binding site mE1_TFBS_cad
3L	12428291	3L_12428291_SNP [dm3] 3L_12435191_SNP [dm6]	A	T	5.100e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z
3R	14736089	3R_14736089_DEL [dm3] 3R_18910367_DEL [dm6]	AGTCATAA	A	5.106e^-4	0.998	UTR_3_PRIME EndoA DOWNSTREAM CG14291 & 1 other
2L	3734552	2L_3734552_SNP [dm3] 2L_3734552_SNP [dm6]	T	C	5.116e^-4	0.998	INTRON CG10019
2R	12403336	2R_12403336_SNP [dm3] 2R_16515831_SNP [dm6]	A	G	5.122e^-4	0.998	UPSTREAM Sema-2a INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	14454282	2R_14454282_SNP [dm3] 2R_18566777_SNP [dm6]	G	A	5.127e^-4	0.998	INTRON GEFmeso	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3734548	2L_3734548_SNP [dm3] 2L_3734548_SNP [dm6]	G	T	5.129e^-4	0.998	INTRON CG10019
2R	18029046	2R_18029046_SNP [dm3] 2R_22141541_SNP [dm6]	A	G	5.140e^-4	0.998	DOWNSTREAM gom INTRON a
3L	12344457	3L_12344457_SNP [dm3] 3L_12351357_SNP [dm6]	G	T	5.149e^-4	0.998	UTR_5_PRIME CrzR
2L	3734546	2L_3734546_SNP [dm3] 2L_3734546_SNP [dm6]	A	T	5.149e^-4	0.998	INTRON CG10019
X	1432115	X_1432115_SNP [dm3] X_1538082_SNP [dm6]	G	A	5.158e^-4	0.998	INTRON Mur2B
X	3256282	X_3256282_SNP [dm3] X_3362249_SNP [dm6]	G	A	5.164e^-4	0.998	INTERGENIC
X	2955018	X_2955018_SNP [dm3] X_3060985_SNP [dm6]	T	A	5.178e^-4	0.998	INTRON kirre
X	9960977	X_9960977_SNP [dm3] X_10066944_SNP [dm6]	T	G	5.206e^-4	0.998	INTRON CG15312
3L	20359472	3L_20359472_SNP [dm3] 3L_20366372_SNP [dm6]	A	T	5.215e^-4	0.998	UTR_5_PRIME Toll-9 UPSTREAM Toll-9 & 1 other	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	12151596	2L_12151596_SNP [dm3] 2L_12151596_SNP [dm6]	C	T	5.217e^-4	0.998	INTRON CG31760
2L	9208320	2L_9208320_SNP [dm3] 2L_9208320_SNP [dm6]	C	T	5.224e^-4	0.998	INTRON tai	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14035464	3R_14035464_SNP [dm3] 3R_18209742_SNP [dm6]	T	C	5.226e^-4	0.998	DOWNSTREAM CG44158 INTRON CG7985
3R	16480469	3R_16480469_SNP [dm3] 3R_20654747_SNP [dm6]	A	G	5.235e^-4	0.998	INTRON Nep4
X	12992776	X_12992776_SNP [dm3] X_13098743_SNP [dm6]	A	G	5.235e^-4	0.998	INTRON CG43313
3L	13009032	3L_13009032_SNP [dm3] 3L_13015932_SNP [dm6]	T	C	5.239e^-4	0.998	UPSTREAM CG11267 & 1 other INTERGENIC
3L	4697535	3L_4697535_SNP [dm3] 3L_4697535_SNP [dm6]	C	G	5.239e^-4	0.998	UPSTREAM CG13713 INTRON RhoGEF64C	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2L	13732111	2L_13732111_SNP [dm3] 2L_13732111_SNP [dm6]	T	A	5.246e^-4	0.998	INTERGENIC
3L	8488940	3L_8488940_SNP [dm3] 3L_8495840_SNP [dm6]	A	G	5.247e^-4	0.998	INTRON CG43163
3R	22877827	3R_22877827_SNP [dm3] 3R_27052105_SNP [dm6]	T	G	5.248e^-4	0.998	INTRON RYa-R
X	7568789	X_7568789_SNP [dm3] X_7674756_SNP [dm6]	T	G	5.250e^-4	0.998	UTR_3_PRIME ct
3R	19822788	3R_19822788_SNP [dm3] 3R_23997066_SNP [dm6]	A	C	5.250e^-4	0.998	DOWNSTREAM CG33108 & 2 others INTRON CG33108	TF binding site BDTNP1_TFBS_dl
2L	2949693	2L_2949693_SNP [dm3] 2L_2949693_SNP [dm6]	A	G	5.252e^-4	0.998	SYNONYMOUS_CODING lilli	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7028466	2L_7028466_SNP [dm3] 2L_7028466_SNP [dm6]	T	A	5.263e^-4	0.998	INTRON CG3476
2R	6470196	2R_6470196_SNP [dm3] 2R_10582691_SNP [dm6]	A	G	5.269e^-4	0.998	UPSTREAM psq INTRON psq	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
X	9439602	X_9439602_SNP [dm3] X_9545569_SNP [dm6]	T	C	5.271e^-4	0.998	INTRON CG32700
3R	14771271	3R_14771271_SNP [dm3] 3R_18945549_SNP [dm6]	A	T	5.284e^-4	0.998	INTRON CG42613
2L	6386522	2L_6386522_SNP [dm3] 2L_6386522_SNP [dm6]	G	A	5.284e^-4	0.998	INTRON CG42368
3R	26083619	3R_26083619_SNP [dm3] 3R_30257897_SNP [dm6]	A	C	5.286e^-4	0.998	INTERGENIC
2L	1183170	2L_1183170_SNP [dm3] 2L_1183170_SNP [dm6]	G	T	5.289e^-4	0.998	SYNONYMOUS_CODING CG5126 UPSTREAM Tgt DOWNSTREAM CG4896	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	18091391	3L_18091391_SNP [dm3] 3L_18098291_SNP [dm6]	T	A	5.308e^-4	0.998	INTRON CG13698
X	11971911	X_11971911_DEL [dm3] X_12077878_DEL [dm6]	TT	T	5.315e^-4	0.998	INTRON CR43960 & 1 other
3R	10342073	3R_10342073_SNP [dm3] 3R_14516351_SNP [dm6]	T	C	5.333e^-4	0.998	SYNONYMOUS_CODING Pde6 UPSTREAM CG34273
X	8606192	X_8606192_SNP [dm3] X_8712159_SNP [dm6]	T	C	5.338e^-4	0.998	DOWNSTREAM CG2004 INTRON Hexo2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	26648871	3R_26648871_SNP [dm3] 3R_30823149_SNP [dm6]	G	T	5.345e^-4	0.998	UPSTREAM cindr INTRON cindr	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	20433924	3R_20433924_DEL [dm3] 3R_24608202_DEL [dm6]	CCGAAATGC	C	5.360e^-4	0.998	INTRON mld
X	14457997	X_14457997_SNP [dm3] X_14563964_SNP [dm6]	G	A	5.360e^-4	0.998	INTERGENIC
3L	13827335	3L_13827335_SNP [dm3] 3L_13834235_SNP [dm6]	G	A	5.370e^-4	0.998	INTERGENIC
2R	18367891	2R_18367891_SNP [dm3] 2R_22480386_SNP [dm6]	T	C	5.394e^-4	0.998	SYNONYMOUS_CODING CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	20382981	3L_20382981_SNP [dm3] 3L_20389881_SNP [dm6]	C	A	5.404e^-4	0.998	INTRON fbl EXON CR43944
3L	13751874	3L_13751874_SNP [dm3] 3L_13758774_SNP [dm6]	C	A	5.408e^-4	0.998	INTRON bru-3
3R	17082248	3R_17082248_SNP [dm3] 3R_21256526_SNP [dm6]	A	G	5.419e^-4	0.998	INTRON ETHR
3L	5587922	3L_5587922_SNP [dm3] 3L_5594822_SNP [dm6]	T	C	5.423e^-4	0.998	UPSTREAM CG5150 INTRON CG10592	TF binding site BDTNP1_TFBS_dl
X	15014666	X_15014666_DEL [dm3] X_15120633_DEL [dm6]	TGT	T	5.425e^-4	0.998	INTERGENIC
X	14792024	X_14792024_INS [dm3] X_14897991_INS [dm6]	A	AGTACAAC	5.429e^-4	0.998	INTRON Flo2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20435257	3L_20435257_SNP [dm3] 3L_20442157_SNP [dm6]	A	T	5.433e^-4	0.998	UPSTREAM CG5910 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Trl
2L	9185980	2L_9185980_SNP [dm3] 2L_9185980_SNP [dm6]	T	C	5.437e^-4	0.998	INTRON tai	TF binding site BDTNP1_TFBS_prd
2L	16748322	2L_16748322_DEL [dm3] 2L_16748322_DEL [dm6]	CGTAGACC	C	5.444e^-4	0.998	UTR_3_PRIME CG17912 INTRON CG17912
2R	21098726	2R_21098726_SNP [dm3] 2R_25211203_SNP [dm6]	A	G	5.456e^-4	0.998	INTRON CG9380	regulatory region FlyBase transposable element FlyBase
2R	18493073	2R_18493073_SNP [dm3] 2R_22605568_SNP [dm6]	G	A	5.499e^-4	0.998	UTR_5_PRIME CG4294 UPSTREAM RpS16	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2L	5387676	2L_5387676_SNP [dm3] 2L_5387676_SNP [dm6]	T	C	5.518e^-4	0.998	EXON CR44745	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	16980181	2L_16980181_SNP [dm3] 2L_16980181_SNP [dm6]	T	C	5.520e^-4	0.998	INTRON beat-IIIb
X	14457932	X_14457932_SNP [dm3] X_14563899_SNP [dm6]	C	G	5.527e^-4	0.998	INTERGENIC
2L	17996616	2L_17996616_SNP [dm3] 2L_17996616_SNP [dm6]	C	A	5.528e^-4	0.998	INTERGENIC
3R	15046547	3R_15046547_DEL [dm3] 3R_19220825_DEL [dm6]	AGAGGAT	A	5.531e^-4	0.998	INTRON vib
X	2346676	X_2346676_SNP [dm3] X_2452643_SNP [dm6]	T	A	5.537e^-4	0.998	INTRON boi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo
2R	21073813	2R_21073813_SNP [dm3] 2R_25186290_SNP [dm6]	G	A	5.543e^-4	0.998	INTRON CG9380
3L	20352299	3L_20352299_SNP [dm3] 3L_20359199_SNP [dm6]	C	T	5.546e^-4	0.998	SYNONYMOUS_CODING CG5665 DOWNSTREAM kin17 & 1 other
2L	15354580	2L_15354580_SNP [dm3] 2L_15354580_SNP [dm6]	T	C	5.551e^-4	0.998	INTERGENIC
2R	9565017	2R_9565017_SNP [dm3] 2R_13677512_SNP [dm6]	G	A	5.557e^-4	0.998	INTRON fas
2L	4325929	2L_4325929_SNP [dm3] 2L_4325929_SNP [dm6]	G	T	5.558e^-4	0.998	INTRON CG16857
2L	5955221	2L_5955221_SNP [dm3] 2L_5955221_SNP [dm6]	A	G	5.563e^-4	0.998	UTR_3_PRIME CG9044 DOWNSTREAM CG13999	TF binding site mE1_TFBS_inv
3R	12742760	3R_12742760_SNP [dm3] 3R_16917038_SNP [dm6]	A	G	5.570e^-4	0.998	INTRON iab-8	TF binding site mE1_TFBS_cad
X	12809459	X_12809459_SNP [dm3] X_12915426_SNP [dm6]	C	T	5.589e^-4	0.998	INTRON CR45626

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.517e^-9)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.03575

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	3.9729	0.0462

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1488 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	20952929	2L_20952929_SNP [dm3] 2L_20952929_SNP [dm6]	A	T	3.556e^-7	0.667	INTERGENIC
2L	16244593	2L_16244593_SNP [dm3] 2L_16244593_SNP [dm6]	C	G	2.916e^-6	1	NON_SYNONYMOUS_CODING CG42818
3R	27690841	3R_27690841_SNP [dm3] 3R_31865119_SNP [dm6]	G	A	5.839e^-6	1	INTRON heph
3L	8519751	3L_8519751_SNP [dm3] 3L_8526651_SNP [dm6]	G	T	6.721e^-6	1	INTRON foi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	8250775	3L_8250775_SNP [dm3] 3L_8257675_SNP [dm6]	G	A	7.348e^-6	1	INTRON Dscam4
3R	27680862	3R_27680862_SNP [dm3] 3R_31855140_SNP [dm6]	T	A	1.106e^-5	1	INTRON heph
3L	8444765	3L_8444765_SNP [dm3] 3L_8451665_SNP [dm6]	T	A	1.157e^-5	1	INTRON Gug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve
2L	5276490	2L_5276490_SNP [dm3] 2L_5276490_SNP [dm6]	G	A	1.193e^-5	1	INTRON Bsg25D	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	16427122	2L_16427122_SNP [dm3] 2L_16427122_SNP [dm6]	G	A	1.675e^-5	1	INTRON CG5888	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25934420	3R_25934420_SNP [dm3] 3R_30108698_SNP [dm6]	A	T	1.688e^-5	1	INTRON sima	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	14934837	3R_14934837_SNP [dm3] 3R_19109115_SNP [dm6]	T	A	1.875e^-5	1	INTRON CG6040
2L	3329658	2L_3329658_SNP [dm3] 2L_3329658_SNP [dm6]	A	T	1.916e^-5	1	UTR_3_PRIME CG33282
2L	5391369	2L_5391369_SNP [dm3] 2L_5391369_SNP [dm6]	G	T	1.955e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_hkb
2L	16427046	2L_16427046_SNP [dm3] 2L_16427046_SNP [dm6]	A	C	2.069e^-5	1	INTRON CG5888	TF binding site mE1_TFBS_HSA
2L	17539812	2L_17539812_INS [dm3] 2L_17539812_INS [dm6]	C	CC	2.093e^-5	1	INTERGENIC
2L	16427047	2L_16427047_SNP [dm3] 2L_16427047_SNP [dm6]	C	T	2.154e^-5	1	INTRON CG5888	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18061245	3L_18061245_SNP [dm3] 3L_18068145_SNP [dm6]	A	G	2.367e^-5	1	DOWNSTREAM CG44006 INTERGENIC
2L	16423061	2L_16423061_DEL [dm3] 2L_16423061_DEL [dm6]	GG	G	2.377e^-5	1	INTRON CG5888	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17032124	2L_17032124_SNP [dm3] 2L_17032124_SNP [dm6]	T	G	2.486e^-5	1	INTERGENIC
2R	4541449	2R_4541449_SNP [dm3] 2R_8653944_SNP [dm6]	C	T	2.529e^-5	1	INTRON ptc	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_sens
2R	10236683	2R_10236683_SNP [dm3] 2R_14349178_SNP [dm6]	G	A	2.657e^-5	1	INTRON Shroom
3R	11134208	3R_11134208_DEL [dm3] 3R_15308486_DEL [dm6]	AG	A	2.677e^-5	1	UTR_3_PRIME Tm1 DOWNSTREAM Tm1
3R	27689231	3R_27689231_SNP [dm3] 3R_31863509_SNP [dm6]	G	A	2.708e^-5	1	INTRON heph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8424647	3L_8424647_SNP [dm3] 3L_8431547_SNP [dm6]	G	A	2.858e^-5	1	UTR_3_PRIME Cbl DOWNSTREAM Unr
3R	6640453	3R_6640453_SNP [dm3] 3R_10814731_SNP [dm6]	A	G	2.865e^-5	1	UPSTREAM CG4089 INTRON CG14693
3L	18061340	3L_18061340_SNP [dm3] 3L_18068240_SNP [dm6]	G	T	2.948e^-5	1	DOWNSTREAM CG44006 INTERGENIC
3L	10384607	3L_10384607_SNP [dm3] 3L_10391507_SNP [dm6]	G	T	3.072e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	8327913	3L_8327913_SNP [dm3] 3L_8334813_SNP [dm6]	A	G	3.076e^-5	1	INTERGENIC
3L	8444659	3L_8444659_DEL [dm3] 3L_8451559_DEL [dm6]	AT	C	3.303e^-5	1	INTRON Gug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_eve
2L	13046469	2L_13046469_INS [dm3] 2L_13046469_INS [dm6]	A	AA	3.346e^-5	1	INTRON CG9932
3L	8445451	3L_8445451_SNP [dm3] 3L_8452351_SNP [dm6]	G	A	3.520e^-5	1	INTRON Gug	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	12518167	3L_12518167_SNP [dm3] 3L_12525067_SNP [dm6]	G	A	3.537e^-5	1	SYNONYMOUS_CODING ver DOWNSTREAM eIF-2beta	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10583635	2R_10583635_SNP [dm3] 2R_14696130_SNP [dm6]	G	C	3.568e^-5	1	INTRON mspo
2L	3329901	2L_3329901_SNP [dm3] 2L_3329901_SNP [dm6]	A	T	3.612e^-5	1	DOWNSTREAM CG33282 INTERGENIC
2L	7775133	2L_7775133_SNP [dm3] 2L_7775133_SNP [dm6]	T	C	3.681e^-5	1	DOWNSTREAM CG7179 & 1 other INTERGENIC
2L	15090353	2L_15090353_DEL [dm3] 2L_15090353_DEL [dm6]	TA	T	3.694e^-5	1	INTRON CG15270
3R	6681561	3R_6681561_SNP [dm3] 3R_10855839_SNP [dm6]	C	T	3.820e^-5	1	UTR_3_PRIME CG4511 UPSTREAM CG4570	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19093558	2L_19093558_SNP [dm3] 2L_19093558_SNP [dm6]	A	T	3.958e^-5	1	INTRON Lim3
2L	16455994	2L_16455994_SNP [dm3] 2L_16455994_SNP [dm6]	A	C	4.029e^-5	1	DOWNSTREAM Idgf3 INTERGENIC	regulatory region REDfly_CRMs
2L	16456002	2L_16456002_SNP [dm3] 2L_16456002_SNP [dm6]	C	A	4.029e^-5	1	DOWNSTREAM Idgf3 INTERGENIC	regulatory region REDfly_CRMs
2L	16456005	2L_16456005_DEL [dm3] 2L_16456005_DEL [dm6]	GACCA	T	4.029e^-5	1	DOWNSTREAM Idgf3 INTERGENIC	regulatory region REDfly_CRMs
3R	18800575	3R_18800575_DEL [dm3] 3R_22974853_DEL [dm6]	GCTTTAAG	G	4.178e^-5	1	INTERGENIC
3R	11134218	3R_11134218_DEL [dm3] 3R_15308496_DEL [dm6]	AA	A	4.249e^-5	1	UTR_3_PRIME Tm1 DOWNSTREAM Tm1
3R	25251075	3R_25251075_SNP [dm3] 3R_29425353_SNP [dm6]	T	A	4.292e^-5	1	INTRON Ptp99A
2L	16456062	2L_16456062_SNP [dm3] 2L_16456062_SNP [dm6]	C	G	4.346e^-5	1	DOWNSTREAM Idgf3 INTERGENIC	regulatory region REDfly_CRMs
2L	13529011	2L_13529011_SNP [dm3] 2L_13529011_SNP [dm6]	C	T	4.579e^-5	1	UPSTREAM CG33641 & 1 other DOWNSTREAM CG33640 INTRON B4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7207018	3L_7207018_SNP [dm3] 3L_7213918_SNP [dm6]	A	T	4.655e^-5	1	INTERGENIC
3L	6941295	3L_6941295_SNP [dm3] 3L_6948195_SNP [dm6]	T	C	4.683e^-5	1	INTRON tow
2R	7269832	2R_7269832_SNP [dm3] 2R_11382327_SNP [dm6]	A	G	4.718e^-5	1	INTRON Sod3
2L	6267746	2L_6267746_SNP [dm3] 2L_6267746_SNP [dm6]	A	G	4.735e^-5	1	INTRON Ddr
2L	5599105	2L_5599105_SNP [dm3] 2L_5599105_SNP [dm6]	C	T	4.753e^-5	1	DOWNSTREAM CG18266 INTERGENIC
2L	20924704	2L_20924704_SNP [dm3] 2L_20924704_SNP [dm6]	A	T	4.807e^-5	1	DOWNSTREAM RPA2 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	18495991	2R_18495991_SNP [dm3] 2R_22608486_SNP [dm6]	G	A	4.809e^-5	1	UTR_5_PRIME Vps20 UPSTREAM Vps20 DOWNSTREAM snoRNA:Psi28S-1175c & 3 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8346511	2L_8346511_SNP [dm3] 2L_8346511_SNP [dm6]	G	A	5.041e^-5	1	UPSTREAM CG7778 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	17073511	2L_17073511_INS [dm3] 2L_17073511_INS [dm6]	A	AT	5.231e^-5	1	INTERGENIC
2L	15090343	2L_15090343_SNP [dm3] 2L_15090343_SNP [dm6]	A	G	5.330e^-5	1	INTRON CG15270
X	21361279	X_21361279_SNP [dm3] X_21490252_SNP [dm6]	T	C	5.333e^-5	1	INTERGENIC
3L	15429503	3L_15429503_SNP [dm3] 3L_15436403_SNP [dm6]	G	A	5.372e^-5	1	UPSTREAM CR43625 INTERGENIC
3L	7466407	3L_7466407_SNP [dm3] 3L_7473307_SNP [dm6]	G	A	5.374e^-5	1	DOWNSTREAM CG8541 INTERGENIC
3L	14712745	3L_14712745_SNP [dm3] 3L_14719645_SNP [dm6]	G	A	5.437e^-5	1	INTRON ome
2L	5941625	2L_5941625_SNP [dm3] 2L_5941625_SNP [dm6]	T	C	5.444e^-5	1	UPSTREAM CR45289 DOWNSTREAM Sfp26Ad INTERGENIC
2L	2407243	2L_2407243_SNP [dm3] 2L_2407243_SNP [dm6]	T	C	5.444e^-5	1	SYNONYMOUS_CODING VGlut
X	17713894	X_17713894_SNP [dm3] X_17819861_SNP [dm6]	T	A	5.481e^-5	1	UPSTREAM CG12986 DOWNSTREAM Socs16D INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	10059618	X_10059618_SNP [dm3] X_10165585_SNP [dm6]	A	G	5.535e^-5	1	INTRON CR44894 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	10059619	X_10059619_SNP [dm3] X_10165586_SNP [dm6]	G	A	5.535e^-5	1	INTRON CR44894 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	8645355	2L_8645355_SNP [dm3] 2L_8645355_SNP [dm6]	G	T	5.886e^-5	1	INTRON Sema-1a
3R	6293018	3R_6293018_DEL [dm3] 3R_10467296_DEL [dm6]	CC	C	5.983e^-5	1	INTERGENIC
2R	17652277	2R_17652277_SNP [dm3] 2R_21764772_SNP [dm6]	G	A	6.121e^-5	1	UPSTREAM CR43983 & 1 other DOWNSTREAM CR43984 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3329915	2L_3329915_SNP [dm3] 2L_3329915_SNP [dm6]	A	T	6.171e^-5	1	DOWNSTREAM CG33282 INTERGENIC
3L	4148607	3L_4148607_SNP [dm3] 3L_4148607_SNP [dm6]	C	T	6.268e^-5	1	UPSTREAM CG1299 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	19145377	3R_19145377_INS [dm3] 3R_23319655_INS [dm6]	CC	GTTTATAAGA	6.368e^-5	1	INTRON pnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
2R	9645864	2R_9645864_SNP [dm3] 2R_13758359_SNP [dm6]	C	A	6.371e^-5	1	SYNONYMOUS_CODING CG6280	TF binding site mE1_TFBS_HSA
3R	25934488	3R_25934488_SNP [dm3] 3R_30108766_SNP [dm6]	C	T	6.452e^-5	1	INTRON sima	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	5812664	3L_5812664_SNP [dm3] 3L_5819564_SNP [dm6]	A	G	6.507e^-5	1	INTRON vn
3R	19033495	3R_19033495_SNP [dm3] 3R_23207773_SNP [dm6]	T	C	6.512e^-5	1	INTRON cnc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	8521239	3L_8521239_SNP [dm3] 3L_8528139_SNP [dm6]	T	A	6.546e^-5	1	UPSTREAM foi INTRON foi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18565110	2L_18565110_SNP [dm3] 2L_18565110_SNP [dm6]	C	T	6.567e^-5	1	INTRON Pde11	TF binding site mE1_TFBS_HSA
2L	16469191	2L_16469191_SNP [dm3] 2L_16469191_SNP [dm6]	A	G	6.582e^-5	1	SYNONYMOUS_CODING dac	TF binding site mE1_TFBS_inv
2R	18598908	2R_18598908_SNP [dm3] 2R_22711403_SNP [dm6]	C	T	6.693e^-5	1	SYNONYMOUS_CODING CG30275 UTR_3_PRIME CG30275
3L	3792505	3L_3792505_SNP [dm3] 3L_3792505_SNP [dm6]	G	A	6.811e^-5	1	DOWNSTREAM CG32266 INTRON CG32264
2L	15090347	2L_15090347_SNP [dm3] 2L_15090347_SNP [dm6]	G	A	7.057e^-5	1	INTRON CG15270
3L	8519020	3L_8519020_SNP [dm3] 3L_8525920_SNP [dm6]	C	G	7.245e^-5	1	INTRON foi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	1722086	2L_1722086_SNP [dm3] 2L_1722086_SNP [dm6]	T	G	7.494e^-5	1	INTRON Rim2
2R	12940432	2R_12940432_SNP [dm3] 2R_17052927_SNP [dm6]	G	A	7.504e^-5	1	SYNONYMOUS_CODING CG9646 INTRON CG9646	TF binding site mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	18061236	3L_18061236_SNP [dm3] 3L_18068136_SNP [dm6]	C	T	7.544e^-5	1	DOWNSTREAM CG44006 INTERGENIC
X	10059639	X_10059639_SNP [dm3] X_10165606_SNP [dm6]	T	C	7.595e^-5	1	INTRON CR44894 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	5971771	3R_5971771_SNP [dm3] 3R_10146049_SNP [dm6]	C	A	7.667e^-5	1	INTRON Invadolysin
X	9861283	X_9861283_SNP [dm3] X_9967250_SNP [dm6]	C	G	7.908e^-5	1	DOWNSTREAM CG43386 & 1 other INTRON CG43386
3R	25934493	3R_25934493_SNP [dm3] 3R_30108771_SNP [dm6]	A	C	7.944e^-5	1	INTRON sima	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	11389498	3R_11389498_SNP [dm3] 3R_15563776_SNP [dm6]	C	T	8.025e^-5	1	INTERGENIC
3R	13924655	3R_13924655_SNP [dm3] 3R_18098933_SNP [dm6]	T	C	8.066e^-5	1	INTRON sr
3L	18061234	3L_18061234_SNP [dm3] 3L_18068134_SNP [dm6]	C	T	8.072e^-5	1	DOWNSTREAM CG44006 INTERGENIC
3L	7207213	3L_7207213_DEL [dm3] 3L_7214113_DEL [dm6]	TCTATGT	T	8.296e^-5	1	INTERGENIC
2L	2407608	2L_2407608_SNP [dm3] 2L_2407608_SNP [dm6]	G	A	8.296e^-5	1	SYNONYMOUS_CODING VGlut
X	13281684	X_13281684_INS [dm3] X_13387651_INS [dm6]	T	TAGTCAGGAAAAATT...	8.416e^-5	1	UTR_5_PRIME CG1662 UPSTREAM CG1662 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	27681088	3R_27681088_SNP [dm3] 3R_31855366_SNP [dm6]	G	A	8.502e^-5	1	INTRON heph
3R	27652703	3R_27652703_SNP [dm3] 3R_31826981_SNP [dm6]	T	G	8.519e^-5	1	INTRON RhoGAP100F
3R	11134053	3R_11134053_SNP [dm3] 3R_15308331_SNP [dm6]	T	C	8.629e^-5	1	UTR_3_PRIME Tm1 DOWNSTREAM Tm1
3R	16020673	3R_16020673_SNP [dm3] 3R_20194951_SNP [dm6]	G	T	8.730e^-5	1	INTERGENIC
3L	7207149	3L_7207149_SNP [dm3] 3L_7214049_SNP [dm6]	G	T	8.935e^-5	1	INTERGENIC
2R	6088473	2R_6088473_SNP [dm3] 2R_10200968_SNP [dm6]	C	T	8.949e^-5	1	INTERGENIC
3L	3995305	3L_3995305_DEL [dm3] 3L_3995305_DEL [dm6]	AAAGTCA	A	8.967e^-5	1	INTERGENIC
3R	27675784	3R_27675784_SNP [dm3] 3R_31850062_SNP [dm6]	A	C	8.975e^-5	1	UTR_3_PRIME heph DOWNSTREAM heph
3R	18841238	3R_18841238_SNP [dm3] 3R_23015516_SNP [dm6]	C	T	9.033e^-5	1	DOWNSTREAM CG6688 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3329708	2L_3329708_SNP [dm3] 2L_3329708_SNP [dm6]	G	T	9.060e^-5	1	UTR_3_PRIME CG33282
2L	16495730	2L_16495730_SNP [dm3] 2L_16495730_SNP [dm6]	T	A	9.209e^-5	1	INTRON Tpr2	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	18841264	3R_18841264_SNP [dm3] 3R_23015542_SNP [dm6]	C	T	9.238e^-5	1	DOWNSTREAM CG6688 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10425689	3R_10425689_SNP [dm3] 3R_14599967_SNP [dm6]	A	G	9.372e^-5	1	INTRON stumps	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11813906	2L_11813906_SNP [dm3] 2L_11813906_SNP [dm6]	T	G	9.400e^-5	1	UPSTREAM CycY DOWNSTREAM Pde1c INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	20096649	2R_20096649_SNP [dm3] 2R_24209126_SNP [dm6]	A	C	9.489e^-5	1	UPSTREAM CG11406 INTERGENIC
3R	25251108	3R_25251108_SNP [dm3] 3R_29425386_SNP [dm6]	C	T	9.505e^-5	1	INTRON Ptp99A
2R	19371089	2R_19371089_SNP [dm3] 2R_23483566_SNP [dm6]	G	T	9.556e^-5	1	INTRON CG43795	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15906140	2L_15906140_SNP [dm3] 2L_15906140_SNP [dm6]	C	T	9.720e^-5	1	INTRON beat-Ib
3L	14725485	3L_14725485_SNP [dm3] 3L_14732385_SNP [dm6]	T	C	9.783e^-5	1	DOWNSTREAM CG13471 INTRON ome
3L	690981	3L_690981_SNP [dm3] 3L_690981_SNP [dm6]	T	A	9.785e^-5	1	SYNONYMOUS_CODING RabX6 UPSTREAM CG32483 DOWNSTREAM Vti1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	27652508	3R_27652508_SNP [dm3] 3R_31826786_SNP [dm6]	T	A	9.786e^-5	1	INTRON RhoGAP100F
3R	25934538	3R_25934538_SNP [dm3] 3R_30108816_SNP [dm6]	C	A	9.789e^-5	1	INTRON sima	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	12680238	3L_12680238_SNP [dm3] 3L_12687138_SNP [dm6]	A	G	9.868e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6295239	3R_6295239_SNP [dm3] 3R_10469517_SNP [dm6]	C	G	9.890e^-5	1	INTERGENIC
3L	15324169	3L_15324169_SNP [dm3] 3L_15331069_SNP [dm6]	C	A	9.909e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11224739	2L_11224739_SNP [dm3] 2L_11224739_SNP [dm6]	C	T	9.921e^-5	1	INTRON ab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3R	27664304	3R_27664304_SNP [dm3] 3R_31838582_SNP [dm6]	C	A	9.945e^-5	1	DOWNSTREAM RhoGAP100F INTRON RhoGAP100F
2R	17850560	2R_17850560_SNP [dm3] 2R_21963055_SNP [dm6]	G	A	9.962e^-5	1	INTERGENIC
3L	21197024	3L_21197024_SNP [dm3] 3L_21203924_SNP [dm6]	C	G	9.972e^-5	1	UPSTREAM CG33056 & 1 other INTRON CG10512
3L	8521240	3L_8521240_DEL [dm3] 3L_8528140_DEL [dm6]	AATCGTAC	A	1.023e^-4	1	UPSTREAM foi INTRON foi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8521570	3L_8521570_SNP [dm3] 3L_8528470_SNP [dm6]	C	T	1.023e^-4	1	UPSTREAM foi INTRON foi	TF binding site BDTNP1_TFBS_dl
2R	17652279	2R_17652279_SNP [dm3] 2R_21764774_SNP [dm6]	G	A	1.024e^-4	1	UPSTREAM CR43983 & 1 other DOWNSTREAM CR43984 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3601332	3L_3601332_SNP [dm3] 3L_3601332_SNP [dm6]	G	A	1.027e^-4	1	INTRON Eip63E
2R	13341518	2R_13341518_SNP [dm3] 2R_17454013_SNP [dm6]	G	T	1.036e^-4	1	INTRON CG10764
3R	25644940	3R_25644940_SNP [dm3] 3R_29819218_SNP [dm6]	T	A	1.042e^-4	1	UTR_5_PRIME neo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	8419420	3L_8419420_SNP [dm3] 3L_8426320_SNP [dm6]	T	A	1.059e^-4	1	INTRON Cbl
3R	27698910	3R_27698910_SNP [dm3] 3R_31873188_SNP [dm6]	C	T	1.062e^-4	1	INTRON heph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14067325	X_14067325_SNP [dm3] X_14173292_SNP [dm6]	C	G	1.064e^-4	1	UPSTREAM betaNACtes1 INTERGENIC
3R	27653646	3R_27653646_SNP [dm3] 3R_31827924_SNP [dm6]	G	A	1.064e^-4	1	UTR_5_PRIME RhoGAP100F UPSTREAM RhoGAP100F INTRON RhoGAP100F
3R	27688468	3R_27688468_SNP [dm3] 3R_31862746_SNP [dm6]	A	C	1.064e^-4	1	INTRON heph	TF binding site BDTNP1_TFBS_twi
X	4923090	X_4923090_SNP [dm3] X_5029057_SNP [dm6]	G	A	1.068e^-4	1	INTRON CR44833
3R	9477138	3R_9477138_SNP [dm3] 3R_13651416_SNP [dm6]	C	T	1.073e^-4	1	SYNONYMOUS_CODING rin
3R	27098019	3R_27098019_SNP [dm3] 3R_31272297_SNP [dm6]	C	T	1.079e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	11610796	2L_11610796_SNP [dm3] 2L_11610796_SNP [dm6]	G	A	1.080e^-4	1	SYNONYMOUS_CODING spag4 INTRON kek2
3R	14358977	3R_14358977_SNP [dm3] 3R_18533255_SNP [dm6]	A	G	1.102e^-4	1	INTRON fru
3L	8071616	3L_8071616_SNP [dm3] 3L_8078516_SNP [dm6]	G	A	1.110e^-4	1	INTRON Ect4	TF binding site mE1_TFBS_Kr
2L	20928561	2L_20928561_SNP [dm3] 2L_20928561_SNP [dm6]	G	A	1.118e^-4	1	UPSTREAM CR33319 & 1 other DOWNSTREAM CG9270 INTERGENIC	transposable element FlyBase
2L	16197366	2L_16197366_SNP [dm3] 2L_16197366_SNP [dm6]	A	T	1.122e^-4	1	INTERGENIC
X	9668618	X_9668618_SNP [dm3] X_9774585_SNP [dm6]	A	T	1.129e^-4	1	INTERGENIC
3L	7560911	3L_7560911_SNP [dm3] 3L_7567811_SNP [dm6]	C	A	1.144e^-4	1	INTRON frac
X	4235550	X_4235550_SNP [dm3] X_4341517_SNP [dm6]	C	T	1.147e^-4	1	INTRON norpA
2L	5391438	2L_5391438_DEL [dm3] 2L_5391438_DEL [dm6]	AGGTGATCTTAGA...	A	1.148e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_hkb mE1_TFBS_HSA
X	16922690	X_16922690_SNP [dm3] X_17028657_SNP [dm6]	C	G	1.152e^-4	1	INTRON CG45002
3R	22532979	3R_22532979_SNP [dm3] 3R_26707257_SNP [dm6]	T	C	1.154e^-4	1	INTRON amon	TF binding site mE1_TFBS_ftz_f1
2L	11631822	2L_11631822_SNP [dm3] 2L_11631822_SNP [dm6]	T	A	1.172e^-4	1	INTERGENIC
2L	20928047	2L_20928047_SNP [dm3] 2L_20928047_SNP [dm6]	A	T	1.172e^-4	1	UPSTREAM CR33319 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	7207020	3L_7207020_SNP [dm3] 3L_7213920_SNP [dm6]	C	T	1.187e^-4	1	INTERGENIC
2L	11631820	2L_11631820_SNP [dm3] 2L_11631820_SNP [dm6]	A	T	1.189e^-4	1	INTERGENIC
2L	12064109	2L_12064109_SNP [dm3] 2L_12064109_SNP [dm6]	G	T	1.206e^-4	1	SYNONYMOUS_CODING CG14946 UPSTREAM Rab3-GAP	TF binding site mE1_TFBS_sens
3L	21197027	3L_21197027_DEL [dm3] 3L_21203927_DEL [dm6]	TT	T	1.208e^-4	1	UPSTREAM CG33056 & 1 other INTRON CG10512
2L	5391452	2L_5391452_SNP [dm3] 2L_5391452_SNP [dm6]	G	A	1.228e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_hkb mE1_TFBS_HSA
3L	7207021	3L_7207021_SNP [dm3] 3L_7213921_SNP [dm6]	G	A	1.233e^-4	1	INTERGENIC
3R	27673416	3R_27673416_SNP [dm3] 3R_31847694_SNP [dm6]	A	C	1.239e^-4	1	UTR_3_PRIME heph
3R	27680226	3R_27680226_SNP [dm3] 3R_31854504_SNP [dm6]	A	T	1.239e^-4	1	INTRON heph
3R	11134198	3R_11134198_SNP [dm3] 3R_15308476_SNP [dm6]	T	A	1.245e^-4	1	UTR_3_PRIME Tm1 DOWNSTREAM Tm1
3L	21196847	3L_21196847_SNP [dm3] 3L_21203747_SNP [dm6]	C	G	1.255e^-4	1	UPSTREAM CG33056 & 1 other INTRON CG10512	TF binding site BDTNP1_TFBS_dl
X	7938159	X_7938159_SNP [dm3] X_8044126_SNP [dm6]	C	G	1.286e^-4	1	INTRON fs_1_h	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7938168	X_7938168_SNP [dm3] X_8044135_SNP [dm6]	C	T	1.286e^-4	1	INTRON fs_1_h	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7938169	X_7938169_SNP [dm3] X_8044136_SNP [dm6]	A	G	1.286e^-4	1	INTRON fs_1_h	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17241944	X_17241944_SNP [dm3] X_17347911_SNP [dm6]	A	T	1.292e^-4	1	INTERGENIC
2L	20242163	2L_20242163_SNP [dm3] 2L_20242163_SNP [dm6]	T	C	1.294e^-4	1	INTERGENIC
3L	14252465	3L_14252465_SNP [dm3] 3L_14259365_SNP [dm6]	G	A	1.300e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
2R	5086861	2R_5086861_SNP [dm3] 2R_9199356_SNP [dm6]	A	G	1.302e^-4	1	INTRON unpg	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo
3R	16998247	3R_16998247_DEL [dm3] 3R_21172525_DEL [dm6]	GCGGATAGAG	G	1.302e^-4	1	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16922646	X_16922646_SNP [dm3] X_17028613_SNP [dm6]	T	C	1.306e^-4	1	INTRON CG45002
2L	11618630	2L_11618630_SNP [dm3] 2L_11618630_SNP [dm6]	T	C	1.306e^-4	1	INTRON kek2
2L	10110200	2L_10110200_SNP [dm3] 2L_10110200_SNP [dm6]	C	T	1.322e^-4	1	INTRON CG44153 & 1 other
2L	17006138	2L_17006138_SNP [dm3] 2L_17006138_SNP [dm6]	G	A	1.324e^-4	1	INTERGENIC
3L	5812931	3L_5812931_SNP [dm3] 3L_5819831_SNP [dm6]	A	G	1.327e^-4	1	INTRON vn
2R	19081494	2R_19081494_SNP [dm3] 2R_23193971_SNP [dm6]	A	C	1.335e^-4	1	INTRON CG34371	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27664260	3R_27664260_SNP [dm3] 3R_31838538_SNP [dm6]	A	T	1.335e^-4	1	DOWNSTREAM RhoGAP100F INTRON RhoGAP100F
2R	14559823	2R_14559823_SNP [dm3] 2R_18672318_SNP [dm6]	T	A	1.336e^-4	1	INTRON edl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	13662358	3L_13662358_SNP [dm3] 3L_13669258_SNP [dm6]	G	A	1.340e^-4	1	INTRON bru-3
3R	27650799	3R_27650799_SNP [dm3] 3R_31825077_SNP [dm6]	C	T	1.344e^-4	1	UPSTREAM RhoGAP100F INTRON RhoGAP100F
3R	27667333	3R_27667333_SNP [dm3] 3R_31841611_SNP [dm6]	C	T	1.344e^-4	1	SYNONYMOUS_CODING RhoGAP100F UTR_3_PRIME RhoGAP100F	TF binding site mE1_TFBS_HSA
3R	27674395	3R_27674395_SNP [dm3] 3R_31848673_SNP [dm6]	T	A	1.344e^-4	1	UTR_3_PRIME heph	TF binding site BDTNP1_TFBS_twi
3R	27681412	3R_27681412_DEL [dm3] 3R_31855690_DEL [dm6]	GAGCGAAAGGGATGTTG...	G	1.344e^-4	1	INTRON heph
3R	27683247	3R_27683247_SNP [dm3] 3R_31857525_SNP [dm6]	T	A	1.344e^-4	1	INTRON heph
3R	27686857	3R_27686857_SNP [dm3] 3R_31861135_SNP [dm6]	G	T	1.344e^-4	1	INTRON heph
3R	27688672	3R_27688672_SNP [dm3] 3R_31862950_SNP [dm6]	T	A	1.344e^-4	1	INTRON heph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27690254	3R_27690254_SNP [dm3] 3R_31864532_SNP [dm6]	G	A	1.344e^-4	1	INTRON heph
3R	27679109	3R_27679109_SNP [dm3] 3R_31853387_SNP [dm6]	A	T	1.344e^-4	1	INTRON heph
3L	1372391	3L_1372391_SNP [dm3] 3L_1372391_SNP [dm6]	A	T	1.349e^-4	1	INTRON Ptp61F & 1 other
2L	7586800	2L_7586800_INS [dm3] 2L_7586800_INS [dm6]	T	TA	1.356e^-4	1	INTERGENIC
2L	3329718	2L_3329718_SNP [dm3] 2L_3329718_SNP [dm6]	A	G	1.358e^-4	1	UTR_3_PRIME CG33282
2L	17525811	2L_17525811_SNP [dm3] 2L_17525811_SNP [dm6]	G	A	1.360e^-4	1	SYNONYMOUS_CODING CG15144 DOWNSTREAM Dhc36C
2L	2734177	2L_2734177_SNP [dm3] 2L_2734177_SNP [dm6]	G	A	1.370e^-4	1	INTRON CG31689
X	7696014	X_7696014_SNP [dm3] X_7801981_SNP [dm6]	C	A	1.372e^-4	1	INTERGENIC
2L	11586894	2L_11586894_SNP [dm3] 2L_11586894_SNP [dm6]	C	T	1.401e^-4	1	UPSTREAM Mst33A INTRON kek2
2R	14815962	2R_14815962_SNP [dm3] 2R_18928457_SNP [dm6]	T	A	1.409e^-4	1	INTRON sano
2L	17039086	2L_17039086_SNP [dm3] 2L_17039086_SNP [dm6]	T	A	1.415e^-4	1	INTERGENIC
3R	20519195	3R_20519195_SNP [dm3] 3R_24693473_SNP [dm6]	A	C	1.420e^-4	1	INTRON slo
3R	27654048	3R_27654048_INS [dm3] 3R_31828326_INS [dm6]	A	AATGC	1.422e^-4	1	INTRON RhoGAP100F
2R	16585438	2R_16585438_SNP [dm3] 2R_20697933_SNP [dm6]	G	C	1.422e^-4	1	UPSTREAM dpr INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	14815290	2R_14815290_SNP [dm3] 2R_18927785_SNP [dm6]	T	A	1.423e^-4	1	INTRON sano
3R	27659719	3R_27659719_SNP [dm3] 3R_31833997_SNP [dm6]	A	G	1.428e^-4	1	INTRON RhoGAP100F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8444507	3L_8444507_SNP [dm3] 3L_8451407_SNP [dm6]	T	G	1.435e^-4	1	INTRON Gug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7586847	2L_7586847_SNP [dm3] 2L_7586847_SNP [dm6]	C	T	1.444e^-4	1	INTERGENIC
2R	19253721	2R_19253721_SNP [dm3] 2R_23366198_SNP [dm6]	C	T	1.449e^-4	1	SYNONYMOUS_CODING vir UPSTREAM Ice1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	27656921	3R_27656921_SNP [dm3] 3R_31831199_SNP [dm6]	C	T	1.449e^-4	1	INTRON RhoGAP100F
X	21305347	X_21305347_SNP [dm3] X_21434320_SNP [dm6]	C	T	1.449e^-4	1	INTRON CG42343	transposable element FlyBase
X	4235608	X_4235608_SNP [dm3] X_4341575_SNP [dm6]	C	T	1.454e^-4	1	INTRON norpA
2L	6200982	2L_6200982_SNP [dm3] 2L_6200982_SNP [dm6]	G	T	1.469e^-4	1	INTRON CG34380
3R	27660546	3R_27660546_SNP [dm3] 3R_31834824_SNP [dm6]	C	T	1.470e^-4	1	SYNONYMOUS_CODING RhoGAP100F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	15438204	X_15438204_SNP [dm3] X_15544171_SNP [dm6]	T	C	1.492e^-4	1	INTRON Ac13E
3L	21194991	3L_21194991_SNP [dm3] 3L_21201891_SNP [dm6]	A	T	1.495e^-4	1	INTRON CG33054 & 1 other	TF binding site mE1_TFBS_bab1
3L	9391338	3L_9391338_SNP [dm3] 3L_9398238_SNP [dm6]	A	G	1.507e^-4	1	INTRON CG4080	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA
2L	7586860	2L_7586860_SNP [dm3] 2L_7586860_SNP [dm6]	A	C	1.512e^-4	1	INTERGENIC
2L	2407614	2L_2407614_SNP [dm3] 2L_2407614_SNP [dm6]	C	T	1.518e^-4	1	SYNONYMOUS_CODING VGlut
2L	10110163	2L_10110163_SNP [dm3] 2L_10110163_SNP [dm6]	G	T	1.523e^-4	1	INTRON CG44153 & 1 other
3L	13934473	3L_13934473_SNP [dm3] 3L_13941373_SNP [dm6]	C	T	1.533e^-4	1	SYNONYMOUS_CODING CG32137	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	11224734	2L_11224734_SNP [dm3] 2L_11224734_SNP [dm6]	G	T	1.533e^-4	1	INTRON ab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
2L	8226316	2L_8226316_SNP [dm3] 2L_8226316_SNP [dm6]	C	T	1.533e^-4	1	SYNONYMOUS_CODING Pvr
2L	7776204	2L_7776204_SNP [dm3] 2L_7776204_SNP [dm6]	T	A	1.534e^-4	1	SYNONYMOUS_CODING CG7179	TF binding site mE1_TFBS_cad
3R	8364374	3R_8364374_SNP [dm3] 3R_12538652_SNP [dm6]	A	G	1.550e^-4	1	INTRON Octbeta3R
2R	18498970	2R_18498970_SNP [dm3] 2R_22611465_SNP [dm6]	C	G	1.586e^-4	1	SYNONYMOUS_CODING CG4329	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	19877942	2L_19877942_SNP [dm3] 2L_19877942_SNP [dm6]	T	C	1.608e^-4	1	INTRON sick
2L	12580500	2L_12580500_SNP [dm3] 2L_12580500_SNP [dm6]	C	T	1.634e^-4	1	UPSTREAM CR44596 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	27694319	3R_27694319_SNP [dm3] 3R_31868597_SNP [dm6]	A	T	1.643e^-4	1	INTRON heph
2R	4156037	2R_4156037_SNP [dm3] 2R_8268532_SNP [dm6]	C	T	1.657e^-4	1	INTRON CG30371
2L	9950201	2L_9950201_SNP [dm3] 2L_9950201_SNP [dm6]	A	C	1.662e^-4	1	DOWNSTREAM mir-87 INTERGENIC
2L	9713728	2L_9713728_SNP [dm3] 2L_9713728_SNP [dm6]	G	A	1.668e^-4	1	UTR_3_PRIME Nckx30C
3R	6378366	3R_6378366_SNP [dm3] 3R_10552644_SNP [dm6]	A	C	1.672e^-4	1	INTRON hth
3R	6502138	3R_6502138_SNP [dm3] 3R_10676416_SNP [dm6]	A	G	1.674e^-4	1	INTRON CG6465
3L	7207139	3L_7207139_SNP [dm3] 3L_7214039_SNP [dm6]	A	G	1.681e^-4	1	INTERGENIC
3R	25940431	3R_25940431_INS [dm3] 3R_30114709_INS [dm6]	A	AA	1.682e^-4	1	INTRON sima
2R	10582372	2R_10582372_SNP [dm3] 2R_14694867_SNP [dm6]	G	C	1.683e^-4	1	INTRON mspo
2L	20435294	2L_20435294_SNP [dm3] 2L_20435294_SNP [dm6]	C	G	1.693e^-4	1	INTRON CG31688
X	9861345	X_9861345_SNP [dm3] X_9967312_SNP [dm6]	C	T	1.695e^-4	1	DOWNSTREAM CG43386 & 1 other INTRON CG43386
2L	15634492	2L_15634492_SNP [dm3] 2L_15634492_SNP [dm6]	C	T	1.697e^-4	1	UTR_3_PRIME CG18480
2L	12580502	2L_12580502_DEL [dm3] 2L_12580502_DEL [dm6]	ACAGGA	A	1.705e^-4	1	UPSTREAM CR44596 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	18478112	2L_18478112_SNP [dm3] 2L_18478112_SNP [dm6]	C	A	1.715e^-4	1	INTRON CG10283
2L	17038103	2L_17038103_SNP [dm3] 2L_17038103_SNP [dm6]	T	C	1.733e^-4	1	INTERGENIC
2L	7586845	2L_7586845_SNP [dm3] 2L_7586845_SNP [dm6]	T	G	1.734e^-4	1	INTERGENIC
2L	18478075	2L_18478075_SNP [dm3] 2L_18478075_SNP [dm6]	G	T	1.760e^-4	1	INTRON CG10283
3L	11300869	3L_11300869_SNP [dm3] 3L_11307769_SNP [dm6]	A	G	1.762e^-4	1	INTERGENIC
2L	12580501	2L_12580501_SNP [dm3] 2L_12580501_SNP [dm6]	A	C	1.767e^-4	1	UPSTREAM CR44596 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	17006179	2L_17006179_SNP [dm3] 2L_17006179_SNP [dm6]	A	T	1.771e^-4	1	INTERGENIC
2R	1246716	2R_1246716_SNP [dm3] 2R_5359211_SNP [dm6]	A	G	1.774e^-4	1	INTERGENIC	transposable element FlyBase
3R	25222149	3R_25222149_SNP [dm3] 3R_29396427_SNP [dm6]	G	C	1.783e^-4	1	INTRON Ptp99A
3R	7970147	3R_7970147_SNP [dm3] 3R_12144425_SNP [dm6]	A	T	1.792e^-4	1	SYNONYMOUS_CODING dpr15
2L	21878265	2L_21878265_DEL [dm3] 2L_21878265_DEL [dm6]	AA	A	1.804e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
2L	17073554	2L_17073554_SNP [dm3] 2L_17073554_SNP [dm6]	G	A	1.809e^-4	1	INTERGENIC
3L	7206988	3L_7206988_SNP [dm3] 3L_7213888_SNP [dm6]	C	A	1.821e^-4	1	INTERGENIC
X	13281206	X_13281206_SNP [dm3] X_13387173_SNP [dm6]	G	C	1.822e^-4	1	UPSTREAM CG1662 INTRON Yippee	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Ubx
2R	6102923	2R_6102923_DEL [dm3] 2R_10215418_DEL [dm6]	TATATAT	T	1.824e^-4	1	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	1366740	3L_1366740_SNP [dm3] 3L_1366740_SNP [dm6]	A	G	1.830e^-4	1	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	16410527	2L_16410527_INS [dm3] 2L_16410527_INS [dm6]	C	CATAAATGTATACTGAGACA...	1.841e^-4	1	INTRON CG5888
2R	19148755	2R_19148755_SNP [dm3] 2R_23261232_SNP [dm6]	G	C	1.859e^-4	1	INTERGENIC
2L	15906149	2L_15906149_SNP [dm3] 2L_15906149_SNP [dm6]	C	T	1.864e^-4	1	INTRON beat-Ib
2L	7586813	2L_7586813_SNP [dm3] 2L_7586813_SNP [dm6]	T	A	1.873e^-4	1	INTERGENIC
3R	25490608	3R_25490608_SNP [dm3] 3R_29664886_SNP [dm6]	A	C	1.879e^-4	1	SYNONYMOUS_CODING ppk21	TF binding site mE1_TFBS_sens
2R	1203725	2R_1203725_SNP [dm3] 2R_5316220_SNP [dm6]	C	A	1.881e^-4	1	INTRON sxc
2L	945100	2L_945100_SNP [dm3] 2L_945100_SNP [dm6]	C	T	1.893e^-4	1	INTRON CG4341
3L	8514471	3L_8514471_SNP [dm3] 3L_8521371_SNP [dm6]	G	A	1.906e^-4	1	SYNONYMOUS_CODING se DOWNSTREAM GstO2	TF binding site mE1_TFBS_sens
3R	16887130	3R_16887130_SNP [dm3] 3R_21061408_SNP [dm6]	C	A	1.910e^-4	1	UPSTREAM Mvl DOWNSTREAM Cortactin INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2L	3019808	2L_3019808_SNP [dm3] 2L_3019808_SNP [dm6]	C	T	1.910e^-4	1	SYNONYMOUS_CODING CG17264	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14171333	3R_14171333_SNP [dm3] 3R_18345611_SNP [dm6]	A	G	1.927e^-4	1	INTRON CG15803
3R	27671812	3R_27671812_SNP [dm3] 3R_31846090_SNP [dm6]	A	G	1.929e^-4	1	UTR_3_PRIME RhoGAP100F DOWNSTREAM RhoGAP100F & 1 other
X	20573309	X_20573309_INS [dm3] X_20702282_INS [dm6]	T	TT	1.933e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	18829132	2R_18829132_DEL [dm3] 2R_22941609_DEL [dm6]	AA	A	1.940e^-4	1	UPSTREAM CG42694 & 1 other INTERGENIC
X	13451124	X_13451124_SNP [dm3] X_13557091_SNP [dm6]	T	G	1.958e^-4	1	NON_SYNONYMOUS_CODING CG32631
2R	18994220	2R_18994220_SNP [dm3] 2R_23106697_SNP [dm6]	C	A	1.961e^-4	1	INTERGENIC
X	10059598	X_10059598_SNP [dm3] X_10165565_SNP [dm6]	G	A	1.977e^-4	1	INTRON CR44894 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	19364653	2R_19364653_SNP [dm3] 2R_23477130_SNP [dm6]	G	T	1.983e^-4	1	UPSTREAM CG13557 DOWNSTREAM CR43792 INTRON CG43795 EXON CR43793
3R	24797988	3R_24797988_SNP [dm3] 3R_28972266_SNP [dm6]	G	A	1.984e^-4	1	EXON CR45669
2L	16471770	2L_16471770_SNP [dm3] 2L_16471770_SNP [dm6]	A	G	2.000e^-4	1	INTRON dac
3L	9105364	3L_9105364_SNP [dm3] 3L_9112264_SNP [dm6]	G	A	2.001e^-4	1	UTR_3_PRIME bol INTRON bol
2R	17135668	2R_17135668_SNP [dm3] 2R_21248163_SNP [dm6]	G	C	2.002e^-4	1	INTRON ASPP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15130145	3R_15130145_SNP [dm3] 3R_19304423_SNP [dm6]	G	T	2.021e^-4	1	UTR_3_PRIME Dl DOWNSTREAM Dl
3L	18113870	3L_18113870_SNP [dm3] 3L_18120770_SNP [dm6]	C	G	2.034e^-4	1	SYNONYMOUS_CODING CG7341 DOWNSTREAM CG42853	TF binding site mE1_TFBS_cad
2L	7778636	2L_7778636_SNP [dm3] 2L_7778636_SNP [dm6]	G	A	2.038e^-4	1	UPSTREAM CG7179 INTERGENIC
2R	17438996	2R_17438996_SNP [dm3] 2R_21551491_SNP [dm6]	C	T	2.043e^-4	1	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	13229959	3L_13229959_SNP [dm3] 3L_13236859_SNP [dm6]	C	G	2.043e^-4	1	INTRON caps	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	1245649	2R_1245649_SNP [dm3] 2R_5358144_SNP [dm6]	A	G	2.066e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA transposable element FlyBase
2L	16393631	2L_16393631_SNP [dm3] 2L_16393631_SNP [dm6]	A	G	2.070e^-4	1	INTERGENIC
X	8367912	X_8367912_SNP [dm3] X_8473879_SNP [dm6]	A	G	2.079e^-4	1	SYNONYMOUS_CODING Cp7Fb DOWNSTREAM Cp7Fa INTRON CG33223
2L	20926149	2L_20926149_SNP [dm3] 2L_20926149_SNP [dm6]	G	A	2.089e^-4	1	UPSTREAM RPA2 DOWNSTREAM CG9272 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	12177353	3L_12177353_SNP [dm3] 3L_12184253_SNP [dm6]	G	T	2.092e^-4	1	UPSTREAM CG6910 DOWNSTREAM CAH2 INTERGENIC
3R	9647119	3R_9647119_SNP [dm3] 3R_13821397_SNP [dm6]	T	C	2.097e^-4	1	INTERGENIC
2L	9942365	2L_9942365_SNP [dm3] 2L_9942365_SNP [dm6]	G	C	2.098e^-4	1	SYNONYMOUS_CODING CG5853 UTR_3_PRIME CG4619	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7430452	2L_7430452_SNP [dm3] 2L_7430452_SNP [dm6]	G	A	2.115e^-4	1	DOWNSTREAM CG5958 & 1 other INTERGENIC
2L	1187873	2L_1187873_SNP [dm3] 2L_1187873_SNP [dm6]	C	A	2.115e^-4	1	INTRON CG5001	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	16422810	2L_16422810_SNP [dm3] 2L_16422810_SNP [dm6]	C	A	2.126e^-4	1	INTRON CG5888	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	13556982	2L_13556982_SNP [dm3] 2L_13556982_SNP [dm6]	T	G	2.127e^-4	1	INTRON kuz
2L	16473267	2L_16473267_SNP [dm3] 2L_16473267_SNP [dm6]	C	A	2.133e^-4	1	SYNONYMOUS_CODING dac	TF binding site mE1_TFBS_cad
2L	18890022	2L_18890022_SNP [dm3] 2L_18890022_SNP [dm6]	G	A	2.134e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	3329792	2L_3329792_SNP [dm3] 2L_3329792_SNP [dm6]	T	A	2.136e^-4	1	UTR_3_PRIME CG33282
2R	20096921	2R_20096921_SNP [dm3] 2R_24209398_SNP [dm6]	C	A	2.147e^-4	1	INTERGENIC
X	8340042	X_8340042_SNP [dm3] X_8446009_SNP [dm6]	C	T	2.157e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19044077	2L_19044077_SNP [dm3] 2L_19044077_SNP [dm6]	C	T	2.163e^-4	1	SYNONYMOUS_CODING Ttc19 DOWNSTREAM Catsup	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15794435	2L_15794435_SNP [dm3] 2L_15794435_SNP [dm6]	T	A	2.174e^-4	1	INTERGENIC
3R	1269082	3R_1269082_SNP [dm3] 3R_5443360_SNP [dm6]	A	T	2.189e^-4	1	DOWNSTREAM CG14669 INTRON CG14669	transposable element FlyBase
2L	16416793	2L_16416793_SNP [dm3] 2L_16416793_SNP [dm6]	A	T	2.197e^-4	1	DOWNSTREAM snoRNA:Me28S-A2958 INTRON CG5888
2L	11813946	2L_11813946_SNP [dm3] 2L_11813946_SNP [dm6]	C	A	2.211e^-4	1	UPSTREAM CycY DOWNSTREAM Pde1c INTERGENIC
3R	11533149	3R_11533149_SNP [dm3] 3R_15707427_SNP [dm6]	T	C	2.220e^-4	1	SYNONYMOUS_CODING CG5404
2L	6122447	2L_6122447_SNP [dm3] 2L_6122447_SNP [dm6]	C	T	2.220e^-4	1	INTRON stai
3R	6246634	3R_6246634_SNP [dm3] 3R_10420912_SNP [dm6]	T	A	2.236e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14951548	3R_14951548_SNP [dm3] 3R_19125826_SNP [dm6]	C	T	2.238e^-4	1	SYNONYMOUS_CODING CG6040	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7586808	2L_7586808_SNP [dm3] 2L_7586808_SNP [dm6]	A	T	2.244e^-4	1	INTERGENIC
3R	25322070	3R_25322070_SNP [dm3] 3R_29496348_SNP [dm6]	A	G	2.248e^-4	1	UPSTREAM CG2010 INTRON CG2010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	14259258	3R_14259258_SNP [dm3] 3R_18433536_SNP [dm6]	A	T	2.255e^-4	1	INTRON fru
2R	5086960	2R_5086960_SNP [dm3] 2R_9199455_SNP [dm6]	C	T	2.258e^-4	1	SYNONYMOUS_CODING unpg	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo
3L	8624120	3L_8624120_DEL [dm3] 3L_8631020_DEL [dm6]	TTT	T	2.263e^-4	1	DOWNSTREAM Cdc6 INTRON Zasp66
X	5437010	X_5437010_SNP [dm3] X_5542977_SNP [dm6]	G	A	2.273e^-4	1	INTRON Vsx2
2L	6200993	2L_6200993_SNP [dm3] 2L_6200993_SNP [dm6]	A	C	2.274e^-4	1	INTRON CG34380
2L	1457463	2L_1457463_SNP [dm3] 2L_1457463_SNP [dm6]	A	G	2.277e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14259247	3R_14259247_SNP [dm3] 3R_18433525_SNP [dm6]	C	A	2.286e^-4	1	INTRON fru
2R	7275904	2R_7275904_SNP [dm3] 2R_11388399_SNP [dm6]	T	A	2.297e^-4	1	UTR_5_PRIME CG30022 INTRON sprt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3330441	2L_3330441_SNP [dm3] 2L_3330441_SNP [dm6]	A	G	2.301e^-4	1	UPSTREAM CG3285 DOWNSTREAM CG33282 INTERGENIC
2L	20926776	2L_20926776_SNP [dm3] 2L_20926776_SNP [dm6]	G	T	2.333e^-4	1	NON_SYNONYMOUS_CODING CG9272 UPSTREAM RPA2	TF binding site BDTNP1_TFBS_Med
3R	27083156	3R_27083156_SNP [dm3] 3R_31257434_SNP [dm6]	A	C	2.341e^-4	1	UPSTREAM CG3669 DOWNSTREAM spn-F INTERGENIC
2L	20763966	2L_20763966_SNP [dm3] 2L_20763966_SNP [dm6]	C	G	2.351e^-4	1	SYNONYMOUS_CODING dia	TF binding site mE1_TFBS_sens
X	13126662	X_13126662_SNP [dm3] X_13232629_SNP [dm6]	C	T	2.352e^-4	1	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27081893	3R_27081893_SNP [dm3] 3R_31256171_SNP [dm6]	C	A	2.359e^-4	1	SYNONYMOUS_CODING spn-F	TF binding site mE1_TFBS_cad
3L	15967252	3L_15967252_SNP [dm3] 3L_15974152_SNP [dm6]	C	T	2.365e^-4	1	SYNONYMOUS_CODING brm	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2657847	3L_2657847_SNP [dm3] 3L_2657847_SNP [dm6]	G	A	2.366e^-4	1	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_chinmo
2R	1202364	2R_1202364_SNP [dm3] 2R_5314859_SNP [dm6]	C	T	2.367e^-4	1	INTRON sxc	transposable element FlyBase
3R	20522620	3R_20522620_SNP [dm3] 3R_24696898_SNP [dm6]	C	A	2.370e^-4	1	INTRON slo	TF binding site mE1_TFBS_inv
3R	20679322	3R_20679322_SNP [dm3] 3R_24853600_SNP [dm6]	A	T	2.370e^-4	1	SPLICE_SITE_REGION nct DOWNSTREAM HdacX INTRON nct	TF binding site mE1_TFBS_sens
3L	8516485	3L_8516485_SNP [dm3] 3L_8523385_SNP [dm6]	A	T	2.380e^-4	1	DOWNSTREAM GstO1 INTRON GstO2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_ttk
2L	7715589	2L_7715589_SNP [dm3] 2L_7715589_SNP [dm6]	A	T	2.387e^-4	1	NON_SYNONYMOUS_CODING CG33296
2L	6201238	2L_6201238_SNP [dm3] 2L_6201238_SNP [dm6]	C	T	2.395e^-4	1	INTRON CG34380
2L	3329778	2L_3329778_SNP [dm3] 2L_3329778_SNP [dm6]	G	A	2.412e^-4	1	UTR_3_PRIME CG33282
X	13340857	X_13340857_DEL [dm3] X_13446824_DEL [dm6]	TA	T	2.414e^-4	1	INTRON Neto	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	18497926	2R_18497926_SNP [dm3] 2R_22610421_SNP [dm6]	G	A	2.419e^-4	1	SYNONYMOUS_CODING CG4329	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8180548	2L_8180548_SNP [dm3] 2L_8180548_SNP [dm6]	A	G	2.433e^-4	1	SYNONYMOUS_CODING Piezo INTRON Piezo	TF binding site mE1_TFBS_cad
2L	7046971	2L_7046971_SNP [dm3] 2L_7046971_SNP [dm6]	G	A	2.441e^-4	1	NON_SYNONYMOUS_CODING milt INTRON milt
X	5027847	X_5027847_SNP [dm3] X_5133814_SNP [dm6]	A	T	2.444e^-4	1	DOWNSTREAM Rpn13R INTRON rg & 1 other
3R	25332816	3R_25332816_SNP [dm3] 3R_29507094_SNP [dm6]	C	T	2.464e^-4	1	INTERGENIC
3R	22532939	3R_22532939_SNP [dm3] 3R_26707217_SNP [dm6]	A	G	2.465e^-4	1	INTRON amon	TF binding site mE1_TFBS_ftz_f1
3R	13380586	3R_13380586_SNP [dm3] 3R_17554864_SNP [dm6]	T	G	2.480e^-4	1	INTERGENIC
2R	17807700	2R_17807700_SNP [dm3] 2R_21920195_SNP [dm6]	A	T	2.489e^-4	1	INTRON Fili
2L	16427135	2L_16427135_DEL [dm3] 2L_16427135_DEL [dm6]	CTTATGTCATATTCAGTTGC...	T	2.498e^-4	1	INTRON CG5888	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17143887	2R_17143887_DEL [dm3] 2R_21256382_DEL [dm6]	CCTT	G	2.501e^-4	1	INTRON Rgk3
3L	8940290	3L_8940290_SNP [dm3] 3L_8947190_SNP [dm6]	G	C	2.507e^-4	1	INTRON CG43783 & 1 other
2L	16455992	2L_16455992_SNP [dm3] 2L_16455992_SNP [dm6]	A	T	2.514e^-4	1	DOWNSTREAM Idgf3 INTERGENIC	regulatory region REDfly_CRMs
2L	17084266	2L_17084266_SNP [dm3] 2L_17084266_SNP [dm6]	A	G	2.516e^-4	1	INTERGENIC
3R	18718088	3R_18718088_SNP [dm3] 3R_22892366_SNP [dm6]	A	T	2.530e^-4	1	INTERGENIC
3L	4120166	3L_4120166_SNP [dm3] 3L_4120166_SNP [dm6]	T	C	2.540e^-4	1	INTRON Chd64	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
2L	5826785	2L_5826785_SNP [dm3] 2L_5826785_SNP [dm6]	T	C	2.548e^-4	1	INTRON TrissinR
3L	17017271	3L_17017271_SNP [dm3] 3L_17024171_SNP [dm6]	A	T	2.583e^-4	1	UPSTREAM Fit2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	9202448	3R_9202448_SNP [dm3] 3R_13376726_SNP [dm6]	C	A	2.584e^-4	1	UPSTREAM CR44138 INTRON CG9813
3R	27652465	3R_27652465_DEL [dm3] 3R_31826743_DEL [dm6]	AA	A	2.602e^-4	1	INTRON RhoGAP100F
3L	2372809	3L_2372809_SNP [dm3] 3L_2372809_SNP [dm6]	C	T	2.607e^-4	1	UTR_3_PRIME CG8993 UPSTREAM CG1317 & 1 other DOWNSTREAM mRpL23	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	8519383	3L_8519383_DEL [dm3] 3L_8526283_DEL [dm6]	TG	T	2.607e^-4	1	INTRON foi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	9692587	2L_9692587_SNP [dm3] 2L_9692587_SNP [dm6]	G	T	2.620e^-4	1	INTRON Pka-C1
X	12211631	X_12211631_SNP [dm3] X_12317598_SNP [dm6]	A	G	2.629e^-4	1	INTRON Ten-a	TF binding site mE1_TFBS_chinmo
X	18880666	X_18880666_SNP [dm3] X_18986633_SNP [dm6]	T	C	2.634e^-4	1	INTRON CG43759	TF binding site BDTNP1_TFBS_dl
3L	3006864	3L_3006864_SNP [dm3] 3L_3006864_SNP [dm6]	G	T	2.641e^-4	1	INTRON FMRFaR
3R	10204207	3R_10204207_SNP [dm3] 3R_14378485_SNP [dm6]	A	T	2.643e^-4	1	INTERGENIC
X	17315619	X_17315619_SNP [dm3] X_17421586_SNP [dm6]	G	A	2.668e^-4	1	NON_SYNONYMOUS_CODING CG8611 DOWNSTREAM CG12994	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
3L	16725149	3L_16725149_SNP [dm3] 3L_16732049_SNP [dm6]	T	A	2.673e^-4	1	INTERGENIC
2L	4924600	2L_4924600_SNP [dm3] 2L_4924600_SNP [dm6]	G	A	2.683e^-4	1	INTRON hoe1
2L	6174092	2L_6174092_SNP [dm3] 2L_6174092_SNP [dm6]	A	G	2.702e^-4	1	INTERGENIC
3L	17126371	3L_17126371_SNP [dm3] 3L_17133271_SNP [dm6]	G	T	2.705e^-4	1	INTRON Rbp6
2R	10583664	2R_10583664_SNP [dm3] 2R_14696159_SNP [dm6]	C	A	2.707e^-4	1	INTRON mspo
2L	16863928	2L_16863928_SNP [dm3] 2L_16863928_SNP [dm6]	A	C	2.713e^-4	1	INTERGENIC
X	16922692	X_16922692_SNP [dm3] X_17028659_SNP [dm6]	G	A	2.718e^-4	1	INTRON CG45002
2R	17563062	2R_17563062_SNP [dm3] 2R_21675557_SNP [dm6]	G	C	2.719e^-4	1	INTRON CG30263
2R	17160492	2R_17160492_SNP [dm3] 2R_21272987_SNP [dm6]	A	G	2.722e^-4	1	INTRON Rgk3
2L	5122946	2L_5122946_SNP [dm3] 2L_5122946_SNP [dm6]	T	C	2.723e^-4	1	INTRON Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	9645906	2R_9645906_SNP [dm3] 2R_13758401_SNP [dm6]	G	A	2.749e^-4	1	SYNONYMOUS_CODING CG6280	TF binding site mE1_TFBS_HSA
3R	14259124	3R_14259124_DEL [dm3] 3R_18433402_DEL [dm6]	AGCAAA	A	2.758e^-4	1	INTRON fru
2R	6277438	2R_6277438_SNP [dm3] 2R_10389933_SNP [dm6]	T	A	2.783e^-4	1	INTRON CG42732
3L	899868	3L_899868_SNP [dm3] 3L_899868_SNP [dm6]	C	T	2.784e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	3004051	3L_3004051_SNP [dm3] 3L_3004051_SNP [dm6]	A	T	2.787e^-4	1	INTRON FMRFaR
2R	1225610	2R_1225610_SNP [dm3] 2R_5338105_SNP [dm6]	C	T	2.800e^-4	1	INTERGENIC
3R	27672822	3R_27672822_SNP [dm3] 3R_31847100_SNP [dm6]	C	T	2.806e^-4	1	UTR_3_PRIME heph DOWNSTREAM RhoGAP100F
2R	8431965	2R_8431965_SNP [dm3] 2R_12544460_SNP [dm6]	G	A	2.821e^-4	1	INTRON fra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20562956	X_20562956_SNP [dm3] X_20691929_SNP [dm6]	T	C	2.825e^-4	1	INTRON run	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Kr
X	5683383	X_5683383_SNP [dm3] X_5789350_SNP [dm6]	G	T	2.828e^-4	1	UTR_3_PRIME CG42699 UPSTREAM CG15767
2L	13046676	2L_13046676_SNP [dm3] 2L_13046676_SNP [dm6]	T	G	2.836e^-4	1	INTRON CG9932
2L	17237125	2L_17237125_SNP [dm3] 2L_17237125_SNP [dm6]	C	T	2.845e^-4	1	INTRON beat-IIIc
2R	18030857	2R_18030857_SNP [dm3] 2R_22143352_SNP [dm6]	A	G	2.850e^-4	1	INTRON a	TF binding site BDTNP1_TFBS_twi
3L	21218925	3L_21218925_SNP [dm3] 3L_21225825_SNP [dm6]	G	A	2.858e^-4	1	UPSTREAM Eip78C INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	18566149	2L_18566149_SNP [dm3] 2L_18566149_SNP [dm6]	G	C	2.869e^-4	1	INTRON Pde11
2R	17539926	2R_17539926_SNP [dm3] 2R_21652421_SNP [dm6]	A	C	2.880e^-4	1	UPSTREAM CG30284 INTRON CG10082
3R	10273990	3R_10273990_SNP [dm3] 3R_14448268_SNP [dm6]	C	A	2.890e^-4	1	INTRON cv-c
2L	2681378	2L_2681378_INS [dm3] 2L_2681378_INS [dm6]	CGC	AATAAAATATAAAA...	2.906e^-4	1	INTRON CG31690
3R	18800596	3R_18800596_SNP [dm3] 3R_22974874_SNP [dm6]	T	A	2.907e^-4	1	INTERGENIC
2L	4200392	2L_4200392_SNP [dm3] 2L_4200392_SNP [dm6]	A	T	2.908e^-4	1	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	13350168	2L_13350168_SNP [dm3] 2L_13350168_SNP [dm6]	C	T	2.909e^-4	1	UTR_3_PRIME CG9395
X	3627777	X_3627777_SNP [dm3] X_3733744_SNP [dm6]	C	G	2.913e^-4	1	INTRON tlk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9374292	2L_9374292_SNP [dm3] 2L_9374292_SNP [dm6]	T	A	2.920e^-4	1	DOWNSTREAM CR43865 INTRON Shawl
2R	18159762	2R_18159762_SNP [dm3] 2R_22272257_SNP [dm6]	T	C	2.922e^-4	1	INTRON dve
3L	8444121	3L_8444121_SNP [dm3] 3L_8451021_SNP [dm6]	T	C	2.922e^-4	1	INTRON Gug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	15113032	2R_15113032_SNP [dm3] 2R_19225527_SNP [dm6]	G	A	2.926e^-4	1	INTRON hppy	TF binding site mE1_TFBS_chinmo
X	21363568	X_21363568_SNP [dm3] X_21492541_SNP [dm6]	C	T	2.934e^-4	1	INTERGENIC
2L	9007832	2L_9007832_SNP [dm3] 2L_9007832_SNP [dm6]	G	A	2.942e^-4	1	INTERGENIC
3R	27690432	3R_27690432_SNP [dm3] 3R_31864710_SNP [dm6]	C	A	2.980e^-4	1	INTRON heph
2L	11590932	2L_11590932_SNP [dm3] 2L_11590932_SNP [dm6]	G	C	2.982e^-4	1	DOWNSTREAM Acp33A INTRON kek2
3L	6668814	3L_6668814_SNP [dm3] 3L_6675714_SNP [dm6]	C	A	2.986e^-4	1	INTERGENIC
2R	6097241	2R_6097241_SNP [dm3] 2R_10209736_SNP [dm6]	T	C	2.998e^-4	1	INTRON Hr46 & 1 other
2R	15268963	2R_15268963_DEL [dm3] 2R_19381458_DEL [dm6]	CT	C	3.009e^-4	1	UPSTREAM CG10073 INTRON CG10073
3L	8444365	3L_8444365_SNP [dm3] 3L_8451265_SNP [dm6]	A	T	3.013e^-4	1	INTRON Gug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	21879206	2L_21879206_SNP [dm3] 2L_21879206_SNP [dm6]	G	C	3.014e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15885852	3R_15885852_SNP [dm3] 3R_20060130_SNP [dm6]	T	C	3.026e^-4	1	UPSTREAM CG4390 DOWNSTREAM mdlc INTERGENIC
2L	20114465	2L_20114465_SNP [dm3] 2L_20114465_SNP [dm6]	G	T	3.033e^-4	1	INTERGENIC
2L	14791085	2L_14791085_SNP [dm3] 2L_14791085_SNP [dm6]	G	T	3.041e^-4	1	INTERGENIC
2R	17438999	2R_17438999_SNP [dm3] 2R_21551494_SNP [dm6]	G	A	3.045e^-4	1	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	21204314	3L_21204314_SNP [dm3] 3L_21211214_SNP [dm6]	G	C	3.049e^-4	1	INTRON CG10508
3L	11250905	3L_11250905_DEL [dm3] 3L_11257805_DEL [dm6]	CC	C	3.059e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	6410716	2R_6410716_DEL [dm3] 2R_10523211_DEL [dm6]	GTG	G	3.060e^-4	1	DOWNSTREAM lola INTRON lola	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	806781	3L_806781_SNP [dm3] 3L_806781_SNP [dm6]	T	C	3.064e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8652763	2L_8652763_SNP [dm3] 2L_8652763_SNP [dm6]	C	A	3.070e^-4	1	INTRON Sema-1a
3L	11167289	3L_11167289_SNP [dm3] 3L_11174189_SNP [dm6]	T	A	3.075e^-4	1	INTRON CG14142
2L	3329772	2L_3329772_SNP [dm3] 2L_3329772_SNP [dm6]	T	G	3.077e^-4	1	UTR_3_PRIME CG33282
3R	14951500	3R_14951500_SNP [dm3] 3R_19125778_SNP [dm6]	G	A	3.078e^-4	1	SYNONYMOUS_CODING CG6040	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6250411	3R_6250411_DEL [dm3] 3R_10424689_DEL [dm6]	CC	C	3.078e^-4	1	INTERGENIC
2L	4924452	2L_4924452_SNP [dm3] 2L_4924452_SNP [dm6]	T	C	3.114e^-4	1	INTRON hoe1
2R	9645882	2R_9645882_SNP [dm3] 2R_13758377_SNP [dm6]	C	A	3.116e^-4	1	SYNONYMOUS_CODING CG6280	TF binding site mE1_TFBS_HSA
3L	13848282	3L_13848282_SNP [dm3] 3L_13855182_SNP [dm6]	A	G	3.117e^-4	1	INTRON Hml
3L	1408861	3L_1408861_SNP [dm3] 3L_1408861_SNP [dm6]	G	A	3.121e^-4	1	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo
2L	20924128	2L_20924128_SNP [dm3] 2L_20924128_SNP [dm6]	C	T	3.122e^-4	1	DOWNSTREAM RPA2 INTRON CR33318
3R	27693510	3R_27693510_SNP [dm3] 3R_31867788_SNP [dm6]	A	T	3.122e^-4	1	INTRON heph
3R	27693564	3R_27693564_SNP [dm3] 3R_31867842_SNP [dm6]	G	T	3.122e^-4	1	INTRON heph
3R	27693565	3R_27693565_DEL [dm3] 3R_31867843_DEL [dm6]	GA	G	3.122e^-4	1	INTRON heph
2L	6175163	2L_6175163_SNP [dm3] 2L_6175163_SNP [dm6]	A	G	3.125e^-4	1	INTERGENIC
2L	20114430	2L_20114430_SNP [dm3] 2L_20114430_SNP [dm6]	C	T	3.155e^-4	1	INTERGENIC
2L	7586842	2L_7586842_SNP [dm3] 2L_7586842_SNP [dm6]	G	T	3.157e^-4	1	INTERGENIC
2L	16411472	2L_16411472_SNP [dm3] 2L_16411472_SNP [dm6]	T	C	3.178e^-4	1	INTRON CG5888	TF binding site BDTNP1_TFBS_dl
2R	5136389	2R_5136389_SNP [dm3] 2R_9248884_SNP [dm6]	T	C	3.179e^-4	1	INTERGENIC
X	3773694	X_3773694_SNP [dm3] X_3879661_SNP [dm6]	G	A	3.181e^-4	1	SYNONYMOUS_CODING CG2930 DOWNSTREAM CG2930	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	4288881	3L_4288881_SNP [dm3] 3L_4288881_SNP [dm6]	C	T	3.197e^-4	1	UPSTREAM Hexo1 DOWNSTREAM TfIIEbeta INTRON Hexo1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	14165962	3R_14165962_SNP [dm3] 3R_18340240_SNP [dm6]	T	C	3.200e^-4	1	INTRON CG15803
3L	7206979	3L_7206979_SNP [dm3] 3L_7213879_SNP [dm6]	A	C	3.201e^-4	1	INTERGENIC
3R	25350755	3R_25350755_SNP [dm3] 3R_29525033_SNP [dm6]	C	T	3.214e^-4	1	INTERGENIC
X	13449905	X_13449905_SNP [dm3] X_13555872_SNP [dm6]	A	C	3.217e^-4	1	UPSTREAM CG32631 & 1 other INTERGENIC
2R	5983073	2R_5983073_SNP [dm3] 2R_10095568_SNP [dm6]	C	T	3.231e^-4	1	UTR_3_PRIME CG2269 UPSTREAM Jra	TF binding site BDTNP1_TFBS_dl
2L	16837039	2L_16837039_SNP [dm3] 2L_16837039_SNP [dm6]	T	C	3.232e^-4	1	SYNONYMOUS_CODING CG13283 UPSTREAM SclB & 1 other
2R	10085889	2R_10085889_SNP [dm3] 2R_14198384_SNP [dm6]	A	G	3.236e^-4	1	DOWNSTREAM VGAT & 1 other INTERGENIC
2L	14165524	2L_14165524_SNP [dm3] 2L_14165524_SNP [dm6]	T	C	3.246e^-4	1	SYNONYMOUS_CODING CG43333	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	17210592	2L_17210592_SNP [dm3] 2L_17210592_SNP [dm6]	C	G	3.248e^-4	1	INTRON beat-IIIc
2L	17038438	2L_17038438_INS [dm3] 2L_17038438_INS [dm6]	T	TTTA	3.266e^-4	1	INTERGENIC
3L	13934479	3L_13934479_SNP [dm3] 3L_13941379_SNP [dm6]	A	T	3.269e^-4	1	SYNONYMOUS_CODING CG32137	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	16197276	2L_16197276_SNP [dm3] 2L_16197276_SNP [dm6]	G	C	3.272e^-4	1	INTERGENIC
2R	13551630	2R_13551630_SNP [dm3] 2R_17664125_SNP [dm6]	A	G	3.275e^-4	1	INTRON CCHa1-R
2R	11967868	2R_11967868_SNP [dm3] 2R_16080363_SNP [dm6]	T	C	3.277e^-4	1	DOWNSTREAM Dg INTERGENIC
2L	16456076	2L_16456076_SNP [dm3] 2L_16456076_SNP [dm6]	G	T	3.277e^-4	1	DOWNSTREAM Idgf3 INTERGENIC	regulatory region REDfly_CRMs
2R	16927392	2R_16927392_SNP [dm3] 2R_21039887_SNP [dm6]	T	C	3.281e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3460119	2L_3460119_SNP [dm3] 2L_3460119_SNP [dm6]	C	T	3.287e^-4	1	DOWNSTREAM CG3246 INTRON Sec5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18719861	3R_18719861_SNP [dm3] 3R_22894139_SNP [dm6]	C	A	3.302e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
X	21201743	X_21201743_SNP [dm3] X_21330716_SNP [dm6]	A	T	3.345e^-4	1	UTR_3_PRIME tty DOWNSTREAM tty
3L	6109754	3L_6109754_SNP [dm3] 3L_6116654_SNP [dm6]	G	C	3.347e^-4	1	INTRON Ets65A	TF binding site mE1_TFBS_Kr
2L	11814081	2L_11814081_SNP [dm3] 2L_11814081_SNP [dm6]	C	T	3.361e^-4	1	UPSTREAM CycY DOWNSTREAM Pde1c INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	6244658	2L_6244658_SNP [dm3] 2L_6244658_SNP [dm6]	A	T	3.365e^-4	1	INTERGENIC
3L	4120168	3L_4120168_SNP [dm3] 3L_4120168_SNP [dm6]	A	T	3.375e^-4	1	INTRON Chd64	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
X	17162294	X_17162294_SNP [dm3] X_17268261_SNP [dm6]	T	C	3.376e^-4	1	UTR_5_PRIME f INTRON f
2L	16244585	2L_16244585_SNP [dm3] 2L_16244585_SNP [dm6]	A	T	3.379e^-4	1	NON_SYNONYMOUS_CODING CG42818
2L	6189901	2L_6189901_SNP [dm3] 2L_6189901_SNP [dm6]	T	C	3.381e^-4	1	INTRON CG34380	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo
X	8277873	X_8277873_SNP [dm3] X_8383840_SNP [dm6]	G	A	3.383e^-4	1	INTERGENIC
2R	19371199	2R_19371199_SNP [dm3] 2R_23483676_SNP [dm6]	T	C	3.397e^-4	1	INTRON CG43795	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22565750	3L_22565750_SNP [dm3] 3L_22572650_SNP [dm6]	A	C	3.429e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	15105741	X_15105741_SNP [dm3] X_15211708_SNP [dm6]	T	C	3.446e^-4	1	DOWNSTREAM CG5662 INTERGENIC
X	5683348	X_5683348_SNP [dm3] X_5789315_SNP [dm6]	C	A	3.447e^-4	1	UTR_3_PRIME CG42699 UPSTREAM CG15767
3L	12451347	3L_12451347_SNP [dm3] 3L_12458247_SNP [dm6]	T	G	3.464e^-4	1	INTERGENIC
3R	10274018	3R_10274018_SNP [dm3] 3R_14448296_SNP [dm6]	A	G	3.471e^-4	1	INTRON cv-c
3R	6204687	3R_6204687_SNP [dm3] 3R_10378965_SNP [dm6]	A	T	3.493e^-4	1	UPSTREAM Rfx INTERGENIC
3R	26309356	3R_26309356_SNP [dm3] 3R_30483634_SNP [dm6]	G	A	3.495e^-4	1	INTRON PH4alphaEFB	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16239590	3R_16239590_SNP [dm3] 3R_20413868_SNP [dm6]	C	A	3.496e^-4	1	INTRON Gfrl
3L	21195034	3L_21195034_SNP [dm3] 3L_21201934_SNP [dm6]	T	C	3.508e^-4	1	UPSTREAM CG10512 INTRON CG33054 & 1 other	TF binding site mE1_TFBS_bab1
2L	2613948	2L_2613948_SNP [dm3] 2L_2613948_SNP [dm6]	A	T	3.514e^-4	1	INTERGENIC
2R	11612301	2R_11612301_SNP [dm3] 2R_15724796_SNP [dm6]	C	A	3.518e^-4	1	INTERGENIC
2L	16455995	2L_16455995_SNP [dm3] 2L_16455995_SNP [dm6]	A	G	3.526e^-4	1	DOWNSTREAM Idgf3 INTERGENIC	regulatory region REDfly_CRMs
3L	8521051	3L_8521051_SNP [dm3] 3L_8527951_SNP [dm6]	T	G	3.532e^-4	1	UPSTREAM foi INTRON foi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3329740	2L_3329740_SNP [dm3] 2L_3329740_SNP [dm6]	G	C	3.533e^-4	1	UTR_3_PRIME CG33282
2L	14909988	2L_14909988_INS [dm3] 2L_14909988_INS [dm6]	G	GCGGAGTGG	3.534e^-4	1	INTRON CG42313	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14725637	3L_14725637_SNP [dm3] 3L_14732537_SNP [dm6]	A	T	3.535e^-4	1	DOWNSTREAM CG13471 INTRON ome
2L	10384183	2L_10384183_SNP [dm3] 2L_10384183_SNP [dm6]	C	T	3.537e^-4	1	DOWNSTREAM cdc2 INTRON CG5096	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1046233	2L_1046233_SNP [dm3] 2L_1046233_SNP [dm6]	A	T	3.540e^-4	1	INTRON IA-2
2L	16738949	2L_16738949_SNP [dm3] 2L_16738949_SNP [dm6]	G	A	3.554e^-4	1	UTR_5_PRIME ChLD3 UPSTREAM glu	TF binding site mE1_TFBS_chinmo
2L	15154162	2L_15154162_SNP [dm3] 2L_15154162_SNP [dm6]	C	G	3.564e^-4	1	INTERGENIC
3R	20068323	3R_20068323_DEL [dm3] 3R_24242601_DEL [dm6]	AGATTACATTTTATTTCATC...	A	3.568e^-4	1	INTRON mask	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	13398327	X_13398327_SNP [dm3] X_13504294_SNP [dm6]	A	T	3.569e^-4	1	INTRON Neto	TF binding site mE1_TFBS_chinmo
2L	17084184	2L_17084184_SNP [dm3] 2L_17084184_SNP [dm6]	T	C	3.572e^-4	1	INTERGENIC
X	16922637	X_16922637_SNP [dm3] X_17028604_SNP [dm6]	A	C	3.585e^-4	1	INTRON CG45002
2L	20772158	2L_20772158_SNP [dm3] 2L_20772158_SNP [dm6]	G	A	3.603e^-4	1	INTRON cad	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4010611	2L_4010611_SNP [dm3] 2L_4010611_SNP [dm6]	C	T	3.615e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	19715709	3R_19715709_DEL [dm3] 3R_23889987_DEL [dm6]	AC	A	3.630e^-4	1	UTR_5_PRIME Pli DOWNSTREAM TfIIA-S	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	17038850	2L_17038850_DEL [dm3] 2L_17038850_DEL [dm6]	CCACATATATCAGTC...	C	3.646e^-4	1	INTERGENIC
3R	27683924	3R_27683924_SNP [dm3] 3R_31858202_SNP [dm6]	T	A	3.658e^-4	1	INTRON heph
2L	5296969	2L_5296969_SNP [dm3] 2L_5296969_SNP [dm6]	G	C	3.668e^-4	1	DOWNSTREAM CR45730 INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	25490824	3R_25490824_SNP [dm3] 3R_29665102_SNP [dm6]	C	T	3.673e^-4	1	SYNONYMOUS_CODING ppk21	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7586785	2L_7586785_SNP [dm3] 2L_7586785_SNP [dm6]	T	C	3.681e^-4	1	INTERGENIC
2L	15158102	2L_15158102_SNP [dm3] 2L_15158102_SNP [dm6]	T	A	3.703e^-4	1	INTERGENIC
2L	13754846	2L_13754846_SNP [dm3] 2L_13754846_SNP [dm6]	A	T	3.708e^-4	1	DOWNSTREAM CR44846 INTRON CR44846 & 1 other
3L	18318282	3L_18318282_SNP [dm3] 3L_18325182_SNP [dm6]	C	T	3.709e^-4	1	INTERGENIC
3L	4357029	3L_4357029_SNP [dm3] 3L_4357029_SNP [dm6]	C	G	3.709e^-4	1	INTRON Cip4
2L	1704751	2L_1704751_SNP [dm3] 2L_1704751_SNP [dm6]	A	G	3.713e^-4	1	UPSTREAM cpb DOWNSTREAM chinmo INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA
2L	1179808	2L_1179808_SNP [dm3] 2L_1179808_SNP [dm6]	C	T	3.719e^-4	1	UTR_3_PRIME CG4896 INTRON CG4896
2R	10582385	2R_10582385_SNP [dm3] 2R_14694880_SNP [dm6]	C	A	3.730e^-4	1	INTRON mspo
2L	16105147	2L_16105147_SNP [dm3] 2L_16105147_SNP [dm6]	A	C	3.734e^-4	1	INTERGENIC
X	7911129	X_7911129_SNP [dm3] X_8017096_SNP [dm6]	T	G	3.735e^-4	1	INTRON Tbh
2L	20056839	2L_20056839_SNP [dm3] 2L_20056839_SNP [dm6]	A	G	3.737e^-4	1	DOWNSTREAM sNPF INTERGENIC
2L	14791112	2L_14791112_SNP [dm3] 2L_14791112_SNP [dm6]	G	T	3.743e^-4	1	INTERGENIC
2L	10611137	2L_10611137_SNP [dm3] 2L_10611137_SNP [dm6]	T	C	3.748e^-4	1	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	13511529	3L_13511529_DEL [dm3] 3L_13518429_DEL [dm6]	GTGG	G	3.768e^-4	1	CODON_DELETION CG10710	TF binding site mE1_TFBS_cad
2L	9680441	2L_9680441_SNP [dm3] 2L_9680441_SNP [dm6]	C	A	3.775e^-4	1	INTERGENIC
X	17713892	X_17713892_SNP [dm3] X_17819859_SNP [dm6]	T	G	3.780e^-4	1	UPSTREAM CG12986 DOWNSTREAM Socs16D INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18679625	3R_18679625_SNP [dm3] 3R_22853903_SNP [dm6]	G	T	3.794e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10290904	2L_10290904_SNP [dm3] 2L_10290904_SNP [dm6]	T	A	3.802e^-4	1	INTRON CG5604	TF binding site BDTNP1_TFBS_twi
2L	5613311	2L_5613311_SNP [dm3] 2L_5613311_SNP [dm6]	T	C	3.806e^-4	1	INTRON CG14010
2R	8990059	2R_8990059_SNP [dm3] 2R_13102554_SNP [dm6]	T	G	3.809e^-4	1	INTERGENIC
X	16098172	X_16098172_SNP [dm3] X_16204139_SNP [dm6]	C	T	3.815e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
X	19395830	X_19395830_SNP [dm3] X_19501797_SNP [dm6]	G	A	3.820e^-4	1	INTRON Pfrx & 1 other
3R	8833951	3R_8833951_SNP [dm3] 3R_13008229_SNP [dm6]	A	G	3.825e^-4	1	UTR_3_PRIME CG7518 DOWNSTREAM CG8031 & 1 other	TF binding site mE1_TFBS_cad
2L	14320632	2L_14320632_SNP [dm3] 2L_14320632_SNP [dm6]	C	T	3.832e^-4	1	SYNONYMOUS_CODING wb
X	21201659	X_21201659_SNP [dm3] X_21330632_SNP [dm6]	T	A	3.843e^-4	1	UTR_3_PRIME tty DOWNSTREAM tty
3L	18061294	3L_18061294_SNP [dm3] 3L_18068194_SNP [dm6]	C	G	3.849e^-4	1	DOWNSTREAM CG44006 INTERGENIC
2L	17073490	2L_17073490_SNP [dm3] 2L_17073490_SNP [dm6]	T	A	3.851e^-4	1	INTERGENIC
X	5683384	X_5683384_SNP [dm3] X_5789351_SNP [dm6]	T	C	3.853e^-4	1	UTR_3_PRIME CG42699 UPSTREAM CG15767
3R	23346413	3R_23346413_SNP [dm3] 3R_27520691_SNP [dm6]	A	C	3.854e^-4	1	UPSTREAM CG12885 INTERGENIC
3L	10684452	3L_10684452_SNP [dm3] 3L_10691352_SNP [dm6]	C	T	3.869e^-4	1	SYNONYMOUS_CODING CG11811 DOWNSTREAM simj	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	20570936	2L_20570936_SNP [dm3] 2L_20570936_SNP [dm6]	T	C	3.871e^-4	1	INTRON CR45347
3R	19382220	3R_19382220_SNP [dm3] 3R_23556498_SNP [dm6]	T	C	3.880e^-4	1	UTR_5_PRIME CG10164 UPSTREAM beat-IV
2L	17073500	2L_17073500_SNP [dm3] 2L_17073500_SNP [dm6]	A	T	3.883e^-4	1	INTERGENIC
X	18389890	X_18389890_SNP [dm3] X_18495857_SNP [dm6]	A	T	3.890e^-4	1	UTR_3_PRIME GalNAc-T2 DOWNSTREAM CR45627 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	7586891	2L_7586891_SNP [dm3] 2L_7586891_SNP [dm6]	G	T	3.891e^-4	1	INTERGENIC
2R	18165434	2R_18165434_SNP [dm3] 2R_22277929_SNP [dm6]	T	C	3.892e^-4	1	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19253795	2R_19253795_SNP [dm3] 2R_23366272_SNP [dm6]	A	T	3.917e^-4	1	UTR_5_PRIME vir UPSTREAM Ice1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	11224756	2L_11224756_SNP [dm3] 2L_11224756_SNP [dm6]	A	C	3.929e^-4	1	INTRON ab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
2L	16105280	2L_16105280_DEL [dm3] 2L_16105280_DEL [dm6]	GAATGAGTTGTTAGAGCTCT...	G	3.955e^-4	1	INTERGENIC
2L	20522674	2L_20522674_SNP [dm3] 2L_20522674_SNP [dm6]	G	A	3.955e^-4	1	INTERGENIC
3R	2850482	3R_2850482_SNP [dm3] 3R_7024760_SNP [dm6]	A	G	3.962e^-4	1	INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2L	21751433	2L_21751433_SNP [dm3] 2L_21751433_SNP [dm6]	C	T	3.968e^-4	1	INTRON step	transposable element FlyBase
2L	16449945	2L_16449945_SNP [dm3] 2L_16449945_SNP [dm6]	G	A	3.976e^-4	1	SYNONYMOUS_CODING Idgf2 UPSTREAM Idgf3
3R	13603303	3R_13603303_SNP [dm3] 3R_17777581_SNP [dm6]	G	T	3.979e^-4	1	INTRON CG43102	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_dl
2R	17135503	2R_17135503_DEL [dm3] 2R_21247998_DEL [dm6]	GG	G	3.982e^-4	1	INTRON ASPP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18841204	3R_18841204_SNP [dm3] 3R_23015482_SNP [dm6]	A	G	3.983e^-4	1	DOWNSTREAM CG6688 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8940516	3L_8940516_SNP [dm3] 3L_8947416_SNP [dm6]	C	A	3.985e^-4	1	INTRON CG43783 & 1 other
2L	14324222	2L_14324222_SNP [dm3] 2L_14324222_SNP [dm6]	C	T	3.994e^-4	1	SYNONYMOUS_CODING wb	TF binding site mE1_TFBS_cad
2L	16423088	2L_16423088_SNP [dm3] 2L_16423088_SNP [dm6]	C	A	3.995e^-4	1	INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6102894	2R_6102894_SNP [dm3] 2R_10215389_SNP [dm6]	C	T	3.997e^-4	1	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	14259135	3R_14259135_SNP [dm3] 3R_18433413_SNP [dm6]	A	G	4.008e^-4	1	INTRON fru
X	12939900	X_12939900_SNP [dm3] X_13045867_SNP [dm6]	T	C	4.019e^-4	1	INTRON rad
2L	7586768	2L_7586768_SNP [dm3] 2L_7586768_SNP [dm6]	G	A	4.029e^-4	1	INTERGENIC
X	17320023	X_17320023_SNP [dm3] X_17425990_SNP [dm6]	C	T	4.034e^-4	1	UPSTREAM CG5613 INTRON CG12994 & 1 other
3R	10387399	3R_10387399_SNP [dm3] 3R_14561677_SNP [dm6]	A	T	4.035e^-4	1	UPSTREAM CG14851 DOWNSTREAM CG14850 INTERGENIC
3R	21405022	3R_21405022_SNP [dm3] 3R_25579300_SNP [dm6]	G	A	4.040e^-4	1	INTRON msi
2L	15775174	2L_15775174_SNP [dm3] 2L_15775174_SNP [dm6]	G	A	4.047e^-4	1	INTERGENIC
3R	19087945	3R_19087945_SNP [dm3] 3R_23262223_SNP [dm6]	C	T	4.049e^-4	1	UTR_3_PRIME orb
3L	18717178	3L_18717178_SNP [dm3] 3L_18724078_SNP [dm6]	C	T	4.061e^-4	1	UPSTREAM CG12477 EXON CR43985
2L	5391488	2L_5391488_SNP [dm3] 2L_5391488_SNP [dm6]	G	C	4.068e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_hkb mE1_TFBS_HSA
3R	19249558	3R_19249558_SNP [dm3] 3R_23423836_SNP [dm6]	T	C	4.077e^-4	1	INTRON CG4374
2R	6108413	2R_6108413_SNP [dm3] 2R_10220908_SNP [dm6]	T	C	4.103e^-4	1	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	12177320	3L_12177320_SNP [dm3] 3L_12184220_SNP [dm6]	C	A	4.104e^-4	1	UPSTREAM CG6910 DOWNSTREAM CAH2 INTERGENIC
3R	19382511	3R_19382511_SNP [dm3] 3R_23556789_SNP [dm6]	G	A	4.104e^-4	1	START_GAINED CG10164 UTR_5_PRIME CG10164 UPSTREAM beat-IV & 1 other
2L	9950205	2L_9950205_SNP [dm3] 2L_9950205_SNP [dm6]	A	T	4.115e^-4	1	DOWNSTREAM mir-87 INTERGENIC
2L	5838112	2L_5838112_SNP [dm3] 2L_5838112_SNP [dm6]	G	C	4.115e^-4	1	INTRON TrissinR
3L	7628951	3L_7628951_SNP [dm3] 3L_7635851_SNP [dm6]	T	G	4.117e^-4	1	INTRON CG33275	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15090392	2L_15090392_SNP [dm3] 2L_15090392_SNP [dm6]	C	T	4.121e^-4	1	INTRON CG15270
2R	17539826	2R_17539826_SNP [dm3] 2R_21652321_SNP [dm6]	T	C	4.124e^-4	1	UPSTREAM CG30284 INTRON CG10082
3R	24084970	3R_24084970_SNP [dm3] 3R_28259248_SNP [dm6]	A	G	4.125e^-4	1	INTERGENIC
2L	3682141	2L_3682141_SNP [dm3] 2L_3682141_SNP [dm6]	G	A	4.129e^-4	1	INTRON CG34340	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	14512529	X_14512529_SNP [dm3] X_14618496_SNP [dm6]	C	G	4.140e^-4	1	INTRON NetA
3L	5156160	3L_5156160_SNP [dm3] 3L_5163060_SNP [dm6]	C	T	4.152e^-4	1	SYNONYMOUS_CODING shep
3R	3626152	3R_3626152_SNP [dm3] 3R_7800430_SNP [dm6]	A	T	4.160e^-4	1	INTRON CG3014
3R	7202327	3R_7202327_SNP [dm3] 3R_11376605_SNP [dm6]	T	C	4.163e^-4	1	SYNONYMOUS_CODING pros	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19160649	2R_19160649_SNP [dm3] 2R_23273126_SNP [dm6]	A	G	4.184e^-4	1	SYNONYMOUS_CODING ord
3R	27641630	3R_27641630_INS [dm3] 3R_31815908_INS [dm6]	A	ATCT	4.192e^-4	1	INTRON RhoGAP100F
3R	13058883	3R_13058883_SNP [dm3] 3R_17233161_SNP [dm6]	T	C	4.192e^-4	1	INTRON beat-IIb
2R	16359739	2R_16359739_SNP [dm3] 2R_20472234_SNP [dm6]	C	T	4.194e^-4	1	SYNONYMOUS_CODING CG12484
X	10059328	X_10059328_SNP [dm3] X_10165295_SNP [dm6]	G	A	4.206e^-4	1	INTRON CR44894 & 1 other
3L	9025445	3L_9025445_INS [dm3] 3L_9032345_INS [dm6]	A	AA	4.224e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	15105742	X_15105742_DEL [dm3] X_15211709_DEL [dm6]	AGTTTCTAAATGTGG...	A	4.227e^-4	1	DOWNSTREAM CG5662 INTERGENIC
X	5674095	X_5674095_SNP [dm3] X_5780062_SNP [dm6]	T	G	4.230e^-4	1	NON_SYNONYMOUS_CODING CG3108 INTRON CG42699
X	15105780	X_15105780_SNP [dm3] X_15211747_SNP [dm6]	A	T	4.231e^-4	1	DOWNSTREAM CG5662 INTERGENIC
X	17713886	X_17713886_SNP [dm3] X_17819853_SNP [dm6]	T	C	4.240e^-4	1	UPSTREAM CG12986 DOWNSTREAM Socs16D INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	18478057	2L_18478057_SNP [dm3] 2L_18478057_SNP [dm6]	G	A	4.241e^-4	1	INTRON CG10283
3L	15429748	3L_15429748_SNP [dm3] 3L_15436648_SNP [dm6]	C	A	4.244e^-4	1	UPSTREAM CR43625 INTERGENIC
2L	7586836	2L_7586836_SNP [dm3] 2L_7586836_SNP [dm6]	T	C	4.247e^-4	1	INTERGENIC
2L	14493160	2L_14493160_SNP [dm3] 2L_14493160_SNP [dm6]	A	G	4.256e^-4	1	SYNONYMOUS_STOP noc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	18067146	3L_18067146_SNP [dm3] 3L_18074046_SNP [dm6]	C	A	4.257e^-4	1	UPSTREAM CG44004 DOWNSTREAM CR45391 INTERGENIC
2L	11193219	2L_11193219_SNP [dm3] 2L_11193219_SNP [dm6]	T	C	4.267e^-4	1	INTRON Ca-beta
2L	15141352	2L_15141352_SNP [dm3] 2L_15141352_SNP [dm6]	T	G	4.271e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	9925063	2L_9925063_SNP [dm3] 2L_9925063_SNP [dm6]	T	A	4.279e^-4	1	UPSTREAM CG42366 & 1 other INTERGENIC
2R	17143898	2R_17143898_SNP [dm3] 2R_21256393_SNP [dm6]	A	T	4.287e^-4	1	INTRON Rgk3
3R	26559195	3R_26559195_SNP [dm3] 3R_30733473_SNP [dm6]	T	G	4.287e^-4	1	INTERGENIC
3R	3631910	3R_3631910_SNP [dm3] 3R_7806188_SNP [dm6]	T	A	4.288e^-4	1	UTR_3_PRIME CG2993 INTRON CG2993
3R	25222235	3R_25222235_SNP [dm3] 3R_29396513_SNP [dm6]	T	C	4.290e^-4	1	INTRON Ptp99A
X	11158856	X_11158856_SNP [dm3] X_11264823_SNP [dm6]	C	G	4.290e^-4	1	INTRON CG44422
2R	9928511	2R_9928511_SNP [dm3] 2R_14041006_SNP [dm6]	A	G	4.295e^-4	1	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	6302944	3R_6302944_SNP [dm3] 3R_10477222_SNP [dm6]	T	C	4.296e^-4	1	INTERGENIC
3R	11693755	3R_11693755_SNP [dm3] 3R_15868033_SNP [dm6]	T	C	4.310e^-4	1	INTRON CG31183
2L	20503684	2L_20503684_SNP [dm3] 2L_20503684_SNP [dm6]	A	G	4.317e^-4	1	INTERGENIC
X	16922689	X_16922689_SNP [dm3] X_17028656_SNP [dm6]	T	A	4.333e^-4	1	INTRON CG45002
2R	19539734	2R_19539734_SNP [dm3] 2R_23652211_SNP [dm6]	C	T	4.339e^-4	1	INTRON retn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
2L	15148370	2L_15148370_SNP [dm3] 2L_15148370_SNP [dm6]	G	T	4.345e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17006150	2L_17006150_SNP [dm3] 2L_17006150_SNP [dm6]	A	T	4.348e^-4	1	INTERGENIC
2R	10085892	2R_10085892_SNP [dm3] 2R_14198387_SNP [dm6]	T	A	4.349e^-4	1	DOWNSTREAM VGAT & 1 other INTERGENIC
2R	4870567	2R_4870567_SNP [dm3] 2R_8983062_SNP [dm6]	A	G	4.359e^-4	1	INTRON CG8213
2L	14320638	2L_14320638_SNP [dm3] 2L_14320638_SNP [dm6]	C	T	4.364e^-4	1	SYNONYMOUS_CODING wb
2L	21837645	2L_21837645_SNP [dm3] 2L_21837645_SNP [dm6]	C	T	4.364e^-4	1	DOWNSTREAM tsh INTERGENIC
2R	7276180	2R_7276180_SNP [dm3] 2R_11388675_SNP [dm6]	A	G	4.370e^-4	1	UTR_5_PRIME CG30022 INTRON sprt	TF binding site mE1_TFBS_sens
2L	951106	2L_951106_SNP [dm3] 2L_951106_SNP [dm6]	C	A	4.396e^-4	1	INTRON CG4341	TF binding site mE1_TFBS_chinmo
X	7937882	X_7937882_SNP [dm3] X_8043849_SNP [dm6]	A	T	4.396e^-4	1	INTRON fs_1_h	TF binding site mE1_TFBS_cad
2L	1457405	2L_1457405_SNP [dm3] 2L_1457405_SNP [dm6]	G	T	4.404e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21201744	X_21201744_SNP [dm3] X_21330717_SNP [dm6]	C	T	4.415e^-4	1	UTR_3_PRIME tty DOWNSTREAM tty
3R	12911121	3R_12911121_INS [dm3] 3R_17085399_INS [dm6]	G	GGTTT	4.420e^-4	1	UPSTREAM GckIII DOWNSTREAM kuk INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	16422508	2L_16422508_SNP [dm3] 2L_16422508_SNP [dm6]	C	T	4.427e^-4	1	INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	5669091	X_5669091_SNP [dm3] X_5775058_SNP [dm6]	A	G	4.434e^-4	1	INTRON CG42699 & 1 other	TF binding site mE1_TFBS_cad
X	3792324	X_3792324_SNP [dm3] X_3898291_SNP [dm6]	T	C	4.435e^-4	1	INTRON CG42541
X	1369676	X_1369676_SNP [dm3] X_1475643_SNP [dm6]	G	A	4.443e^-4	1	INTRON Rab27	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16529347	3L_16529347_SNP [dm3] 3L_16536247_SNP [dm6]	T	A	4.454e^-4	1	INTRON CG43373
3L	12589704	3L_12589704_SNP [dm3] 3L_12596604_SNP [dm6]	T	G	4.460e^-4	1	DOWNSTREAM ara INTERGENIC
2L	15892108	2L_15892108_SNP [dm3] 2L_15892108_SNP [dm6]	T	A	4.472e^-4	1	SYNONYMOUS_CODING Tep1
X	16923027	X_16923027_SNP [dm3] X_17028994_SNP [dm6]	T	C	4.473e^-4	1	INTRON CG45002
3R	17086850	3R_17086850_SNP [dm3] 3R_21261128_SNP [dm6]	T	C	4.473e^-4	1	INTRON ETHR
X	2534807	X_2534807_SNP [dm3] X_2640774_SNP [dm6]	C	G	4.481e^-4	1	UPSTREAM sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	17241899	X_17241899_SNP [dm3] X_17347866_SNP [dm6]	C	T	4.485e^-4	1	INTERGENIC
3R	27646788	3R_27646788_SNP [dm3] 3R_31821066_SNP [dm6]	C	A	4.486e^-4	1	INTRON RhoGAP100F
3R	18956856	3R_18956856_SNP [dm3] 3R_23131134_SNP [dm6]	C	A	4.489e^-4	1	INTRON hh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9500637	3L_9500637_SNP [dm3] 3L_9507537_SNP [dm6]	C	T	4.501e^-4	1	UTR_3_PRIME CG3408
2R	16585766	2R_16585766_SNP [dm3] 2R_20698261_SNP [dm6]	T	C	4.506e^-4	1	UPSTREAM dpr INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	27641623	3R_27641623_DEL [dm3] 3R_31815901_DEL [dm6]	AACACC	A	4.514e^-4	1	INTRON RhoGAP100F
3R	27642489	3R_27642489_SNP [dm3] 3R_31816767_SNP [dm6]	C	T	4.514e^-4	1	INTRON RhoGAP100F
3R	27642490	3R_27642490_SNP [dm3] 3R_31816768_SNP [dm6]	C	T	4.514e^-4	1	INTRON RhoGAP100F
3R	27642496	3R_27642496_SNP [dm3] 3R_31816774_SNP [dm6]	T	A	4.514e^-4	1	INTRON RhoGAP100F
2R	19372043	2R_19372043_SNP [dm3] 2R_23484520_SNP [dm6]	G	A	4.515e^-4	1	INTRON CG43795
3R	15277800	3R_15277800_SNP [dm3] 3R_19452078_SNP [dm6]	C	T	4.517e^-4	1	INTRON CG31221
3L	17016060	3L_17016060_SNP [dm3] 3L_17022960_SNP [dm6]	C	T	4.530e^-4	1	UPSTREAM CG6652 DOWNSTREAM a10 INTERGENIC
2R	7277170	2R_7277170_SNP [dm3] 2R_11389665_SNP [dm6]	A	C	4.530e^-4	1	UPSTREAM CG30022 INTRON sprt
2L	2407386	2L_2407386_INS [dm3] 2L_2407386_INS [dm6]	A	ATATTAACAAAAAA...	4.531e^-4	1	INTRON VGlut
3R	19033346	3R_19033346_SNP [dm3] 3R_23207624_SNP [dm6]	C	A	4.556e^-4	1	INTRON cnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	10138974	3L_10138974_SNP [dm3] 3L_10145874_SNP [dm6]	A	C	4.558e^-4	1	INTERGENIC
2R	16585424	2R_16585424_SNP [dm3] 2R_20697919_SNP [dm6]	C	T	4.570e^-4	1	UPSTREAM dpr INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	15423183	2L_15423183_SNP [dm3] 2L_15423183_SNP [dm6]	C	T	4.571e^-4	1	DOWNSTREAM wor INTERGENIC
3L	18659852	3L_18659852_SNP [dm3] 3L_18666752_SNP [dm6]	C	G	4.576e^-4	1	UTR_3_PRIME MYPT-75D UPSTREAM CG42495	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	11630038	2L_11630038_SNP [dm3] 2L_11630038_SNP [dm6]	G	T	4.586e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
2L	5838090	2L_5838090_SNP [dm3] 2L_5838090_SNP [dm6]	G	T	4.598e^-4	1	INTRON TrissinR
3R	6291750	3R_6291750_SNP [dm3] 3R_10466028_SNP [dm6]	G	T	4.609e^-4	1	INTERGENIC
3L	13236532	3L_13236532_SNP [dm3] 3L_13243432_SNP [dm6]	T	C	4.610e^-4	1	INTRON caps	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8444636	3L_8444636_SNP [dm3] 3L_8451536_SNP [dm6]	G	A	4.615e^-4	1	INTRON Gug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	11874752	2L_11874752_SNP [dm3] 2L_11874752_SNP [dm6]	C	T	4.626e^-4	1	UPSTREAM Pde1c INTRON Pde1c
2R	15449895	2R_15449895_SNP [dm3] 2R_19562390_SNP [dm6]	A	T	4.631e^-4	1	INTRON sm
2L	19644094	2L_19644094_SNP [dm3] 2L_19644094_SNP [dm6]	C	A	4.639e^-4	1	INTRON Lar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15920131	3L_15920131_SNP [dm3] 3L_15927031_SNP [dm6]	A	C	4.646e^-4	1	INTRON Pka-C3
3L	5337660	3L_5337660_SNP [dm3] 3L_5344560_SNP [dm6]	A	G	4.653e^-4	1	SYNONYMOUS_CODING lama	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	2984796	2L_2984796_SNP [dm3] 2L_2984796_SNP [dm6]	T	G	4.666e^-4	1	SYNONYMOUS_CODING Chd1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	17320030	X_17320030_SNP [dm3] X_17425997_SNP [dm6]	T	C	4.672e^-4	1	UPSTREAM CG5613 INTRON CG12994 & 1 other
2L	11580828	2L_11580828_SNP [dm3] 2L_11580828_SNP [dm6]	T	A	4.676e^-4	1	INTERGENIC
3R	13058700	3R_13058700_SNP [dm3] 3R_17232978_SNP [dm6]	T	C	4.693e^-4	1	INTRON beat-IIb
3R	5975728	3R_5975728_SNP [dm3] 3R_10150006_SNP [dm6]	C	T	4.699e^-4	1	INTRON Invadolysin
3R	27083125	3R_27083125_SNP [dm3] 3R_31257403_SNP [dm6]	C	T	4.702e^-4	1	UPSTREAM CG3669 DOWNSTREAM spn-F INTERGENIC
2L	14192635	2L_14192635_SNP [dm3] 2L_14192635_SNP [dm6]	C	T	4.703e^-4	1	INTRON Dyrk2
3L	13074594	3L_13074594_SNP [dm3] 3L_13081494_SNP [dm6]	G	A	4.707e^-4	1	EXON CR43652	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA
2L	19796920	2L_19796920_SNP [dm3] 2L_19796920_SNP [dm6]	G	A	4.715e^-4	1	INTRON sick	TF binding site BDTNP1_TFBS_dl
X	7988821	X_7988821_SNP [dm3] X_8094788_SNP [dm6]	G	A	4.720e^-4	1	UTR_3_PRIME CG2258 UPSTREAM Ubc-E2H	TF binding site mE1_TFBS_HSA
X	16556620	X_16556620_SNP [dm3] X_16662587_SNP [dm6]	G	A	4.723e^-4	1	SYNONYMOUS_CODING CG15865 INTRON r	TF binding site mE1_TFBS_chinmo
3L	16189796	3L_16189796_SNP [dm3] 3L_16196696_SNP [dm6]	G	T	4.732e^-4	1	INTRON CR45437 EXON CR45437
2R	19398897	2R_19398897_SNP [dm3] 2R_23511374_SNP [dm6]	A	G	4.732e^-4	1	UTR_3_PRIME CG3906	TF binding site mE1_TFBS_cad
2L	6090926	2L_6090926_SNP [dm3] 2L_6090926_SNP [dm6]	T	A	4.740e^-4	1	UPSTREAM Kr-h1 & 1 other INTRON Kr-h1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	11438420	2L_11438420_SNP [dm3] 2L_11438420_SNP [dm6]	T	A	4.740e^-4	1	SYNONYMOUS_CODING salm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19602993	3R_19602993_SNP [dm3] 3R_23777271_SNP [dm6]	T	C	4.750e^-4	1	UTR_3_PRIME Nup98-96 INTRON Nup98-96
2L	7586870	2L_7586870_SNP [dm3] 2L_7586870_SNP [dm6]	G	T	4.772e^-4	1	INTERGENIC
3L	2317796	3L_2317796_SNP [dm3] 3L_2317796_SNP [dm6]	T	C	4.786e^-4	1	UPSTREAM CR45427 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	14164535	2L_14164535_SNP [dm3] 2L_14164535_SNP [dm6]	A	T	4.794e^-4	1	INTRON CG43333
3L	2654896	3L_2654896_SNP [dm3] 3L_2654896_SNP [dm6]	T	G	4.798e^-4	1	SYNONYMOUS_CODING CG42304 UTR_3_PRIME Snup DOWNSTREAM Fife
3L	7558477	3L_7558477_SNP [dm3] 3L_7565377_SNP [dm6]	A	G	4.799e^-4	1	NON_SYNONYMOUS_CODING frac
3R	23226811	3R_23226811_SNP [dm3] 3R_27401089_SNP [dm6]	A	C	4.801e^-4	1	INTRON side
3R	8514592	3R_8514592_SNP [dm3] 3R_12688870_SNP [dm6]	G	A	4.804e^-4	1	INTRON kar	TF binding site mE1_TFBS_chinmo
2L	19492705	2L_19492705_SNP [dm3] 2L_19492705_SNP [dm6]	C	G	4.843e^-4	1	NON_SYNONYMOUS_CODING CG10189 UPSTREAM swm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	19898226	2R_19898226_SNP [dm3] 2R_24010703_SNP [dm6]	C	G	4.846e^-4	1	SYNONYMOUS_CODING Unc-89 INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15125850	2L_15125850_SNP [dm3] 2L_15125850_SNP [dm6]	T	C	4.854e^-4	1	INTERGENIC
X	15105812	X_15105812_INS [dm3] X_15211779_INS [dm6]	T	TTTAAAGATATACT...	4.859e^-4	1	DOWNSTREAM CG5662 INTERGENIC
3L	14605708	3L_14605708_SNP [dm3] 3L_14612608_SNP [dm6]	T	A	4.862e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	3363448	2L_3363448_SNP [dm3] 2L_3363448_SNP [dm6]	T	A	4.893e^-4	1	INTRON CG34394	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1603303	2L_1603303_SNP [dm3] 2L_1603303_SNP [dm6]	G	A	4.923e^-4	1	SYNONYMOUS_CODING haf INTRON CG31935	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	8532197	X_8532197_SNP [dm3] X_8638164_SNP [dm6]	T	C	4.925e^-4	1	INTRON oc	regulatory region REDfly_CRMs
3R	6640619	3R_6640619_SNP [dm3] 3R_10814897_SNP [dm6]	C	T	4.925e^-4	1	SYNONYMOUS_CODING CG14693 UPSTREAM CG4089
2R	6408577	2R_6408577_SNP [dm3] 2R_10521072_SNP [dm6]	G	A	4.930e^-4	1	SYNONYMOUS_CODING lola DOWNSTREAM lola INTRON lola	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	18679614	3R_18679614_SNP [dm3] 3R_22853892_SNP [dm6]	C	T	4.937e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_HSA
X	16842747	X_16842747_SNP [dm3] X_16948714_SNP [dm6]	T	G	4.939e^-4	1	UPSTREAM CG13000 INTRON RhoGAP15B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	11614254	3L_11614254_SNP [dm3] 3L_11621154_SNP [dm6]	G	A	4.940e^-4	1	INTRON CG6084
2L	6201237	2L_6201237_SNP [dm3] 2L_6201237_SNP [dm6]	T	C	4.955e^-4	1	INTRON CG34380
3L	8570542	3L_8570542_SNP [dm3] 3L_8577442_SNP [dm6]	T	G	4.955e^-4	1	START_GAINED CG43078 UTR_5_PRIME CG43078	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	806464	3L_806464_SNP [dm3] 3L_806464_SNP [dm6]	C	A	4.955e^-4	1	INTERGENIC
2L	5122939	2L_5122939_SNP [dm3] 2L_5122939_SNP [dm6]	C	T	4.959e^-4	1	SPLICE_SITE_DONOR Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	12374466	2R_12374466_SNP [dm3] 2R_16486961_SNP [dm6]	C	G	4.961e^-4	1	INTRON CG33458
2L	2984937	2L_2984937_SNP [dm3] 2L_2984937_SNP [dm6]	A	G	4.974e^-4	1	SYNONYMOUS_CODING Chd1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7051557	2L_7051557_SNP [dm3] 2L_7051557_SNP [dm6]	C	T	4.982e^-4	1	SYNONYMOUS_CODING milt	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	27684618	3R_27684618_SNP [dm3] 3R_31858896_SNP [dm6]	G	A	4.990e^-4	1	INTRON heph
2L	7586764	2L_7586764_SNP [dm3] 2L_7586764_SNP [dm6]	A	T	4.992e^-4	1	INTERGENIC
3L	17016207	3L_17016207_SNP [dm3] 3L_17023107_SNP [dm6]	A	C	5.004e^-4	1	UPSTREAM CG6652 DOWNSTREAM a10 INTERGENIC
X	8277936	X_8277936_SNP [dm3] X_8383903_SNP [dm6]	A	T	5.007e^-4	1	INTERGENIC
X	6503281	X_6503281_SNP [dm3] X_6609248_SNP [dm6]	A	T	5.011e^-4	1	INTRON pigs
2R	11639383	2R_11639383_INS [dm3] 2R_15751878_INS [dm6]	T	TAT	5.027e^-4	1	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	9898075	2L_9898075_SNP [dm3] 2L_9898075_SNP [dm6]	G	T	5.032e^-4	1	NON_SYNONYMOUS_CODING Muc30E UPSTREAM RpS2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7955323	3L_7955323_SNP [dm3] 3L_7962223_SNP [dm6]	A	G	5.040e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	16413230	2L_16413230_SNP [dm3] 2L_16413230_SNP [dm6]	C	A	5.049e^-4	1	INTRON CG5888	TF binding site mE1_TFBS_HSA
3L	11792036	3L_11792036_DEL [dm3] 3L_11798936_DEL [dm6]	ACTA	A	5.049e^-4	1	DOWNSTREAM CG10361 & 1 other INTERGENIC
2L	16243744	2L_16243744_SNP [dm3] 2L_16243744_SNP [dm6]	G	T	5.063e^-4	1	NON_SYNONYMOUS_CODING CG42818
2L	4205257	2L_4205257_SNP [dm3] 2L_4205257_SNP [dm6]	T	C	5.078e^-4	1	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	5945512	2L_5945512_SNP [dm3] 2L_5945512_SNP [dm6]	A	T	5.083e^-4	1	INTRON Gpdh	TF binding site mE1_TFBS_Trl
2L	16244978	2L_16244978_SNP [dm3] 2L_16244978_SNP [dm6]	T	A	5.091e^-4	1	DOWNSTREAM PRL-1 INTRON CG42818
X	2534821	X_2534821_SNP [dm3] X_2640788_SNP [dm6]	C	T	5.097e^-4	1	UPSTREAM sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18499593	2R_18499593_SNP [dm3] 2R_22612088_SNP [dm6]	C	T	5.099e^-4	1	SYNONYMOUS_CODING CG4329
2L	7031989	2L_7031989_SNP [dm3] 2L_7031989_SNP [dm6]	G	A	5.101e^-4	1	SYNONYMOUS_CODING Rab30 UPSTREAM CG11266	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2R	12359851	2R_12359851_SNP [dm3] 2R_16472346_SNP [dm6]	T	C	5.109e^-4	1	INTERGENIC
X	15105735	X_15105735_SNP [dm3] X_15211702_SNP [dm6]	C	T	5.110e^-4	1	DOWNSTREAM CG5662 INTERGENIC
2L	16389991	2L_16389991_SNP [dm3] 2L_16389991_SNP [dm6]	A	T	5.116e^-4	1	INTERGENIC
2R	7641242	2R_7641242_SNP [dm3] 2R_11753737_SNP [dm6]	A	T	5.122e^-4	1	INTERGENIC
2L	16791898	2L_16791898_SNP [dm3] 2L_16791898_SNP [dm6]	A	C	5.122e^-4	1	INTRON CG17928	TF binding site mE1_TFBS_Trl
2L	20588452	2L_20588452_SNP [dm3] 2L_20588452_SNP [dm6]	T	C	5.131e^-4	1	INTRON CR44909
3R	24323975	3R_24323975_SNP [dm3] 3R_28498253_SNP [dm6]	C	T	5.141e^-4	1	INTRON Dhc98D
3R	6247119	3R_6247119_SNP [dm3] 3R_10421397_SNP [dm6]	T	A	5.147e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	10868597	2R_10868597_SNP [dm3] 2R_14981092_SNP [dm6]	C	T	5.150e^-4	1	UPSTREAM pcs DOWNSTREAM ckn INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Ubx
3L	5818332	3L_5818332_INS [dm3] 3L_5825232_INS [dm6]	A	AGACGGAGA	5.174e^-4	1	INTRON vn
2L	15882559	2L_15882559_SNP [dm3] 2L_15882559_SNP [dm6]	C	T	5.184e^-4	1	DOWNSTREAM CG44475 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	16855814	2L_16855814_SNP [dm3] 2L_16855814_SNP [dm6]	C	A	5.190e^-4	1	INTRON CG31809	transposable element FlyBase
3L	8520756	3L_8520756_SNP [dm3] 3L_8527656_SNP [dm6]	G	C	5.196e^-4	1	INTRON foi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	15439374	X_15439374_DEL [dm3] X_15545341_DEL [dm6]	CCCG	T	5.196e^-4	1	INTRON Ac13E
2L	17073531	2L_17073531_SNP [dm3] 2L_17073531_SNP [dm6]	A	C	5.197e^-4	1	INTERGENIC
X	2616208	X_2616208_SNP [dm3] X_2722175_SNP [dm6]	C	T	5.203e^-4	1	SYNONYMOUS_CODING fs_1_Yb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10913101	3L_10913101_SNP [dm3] 3L_10920001_SNP [dm6]	C	A	5.203e^-4	1	INTERGENIC
X	15105720	X_15105720_SNP [dm3] X_15211687_SNP [dm6]	A	C	5.213e^-4	1	DOWNSTREAM CG5662 INTERGENIC
3R	18990768	3R_18990768_SNP [dm3] 3R_23165046_SNP [dm6]	T	G	5.214e^-4	1	INTERGENIC
X	18389902	X_18389902_SNP [dm3] X_18495869_SNP [dm6]	A	T	5.227e^-4	1	UTR_3_PRIME GalNAc-T2 DOWNSTREAM CR45627 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	11663162	3L_11663162_SNP [dm3] 3L_11670062_SNP [dm6]	T	C	5.229e^-4	1	INTRON CG32085
3L	12217127	3L_12217127_SNP [dm3] 3L_12224027_SNP [dm6]	T	C	5.239e^-4	1	INTRON app
2R	16359733	2R_16359733_SNP [dm3] 2R_20472228_SNP [dm6]	T	C	5.263e^-4	1	SYNONYMOUS_CODING CG12484
3R	6815112	3R_6815112_SNP [dm3] 3R_10989390_SNP [dm6]	G	A	5.266e^-4	1	INTRON CG34114
2L	16473111	2L_16473111_SNP [dm3] 2L_16473111_SNP [dm6]	G	C	5.274e^-4	1	INTRON dac	TF binding site mE1_TFBS_cad
2R	15112549	2R_15112549_SNP [dm3] 2R_19225044_SNP [dm6]	G	T	5.275e^-4	1	INTRON hppy	TF binding site mE1_TFBS_chinmo
2L	960078	2L_960078_SNP [dm3] 2L_960078_SNP [dm6]	T	C	5.278e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	17006199	2L_17006199_SNP [dm3] 2L_17006199_SNP [dm6]	G	T	5.296e^-4	1	INTERGENIC
2L	1704844	2L_1704844_SNP [dm3] 2L_1704844_SNP [dm6]	A	G	5.298e^-4	1	UPSTREAM cpb DOWNSTREAM chinmo INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA
2L	8178429	2L_8178429_DEL [dm3] 2L_8178429_DEL [dm6]	TTAT	T	5.306e^-4	1	INTRON Piezo	TF binding site mE1_TFBS_chinmo
3R	27640261	3R_27640261_SNP [dm3] 3R_31814539_SNP [dm6]	A	C	5.316e^-4	1	INTRON RhoGAP100F
3R	21407437	3R_21407437_SNP [dm3] 3R_25581715_SNP [dm6]	G	C	5.322e^-4	1	NON_SYNONYMOUS_CODING CG4582 INTRON msi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17038463	2R_17038463_SNP [dm3] 2R_21150958_SNP [dm6]	T	C	5.327e^-4	1	INTRON CG30389
3R	24798126	3R_24798126_SNP [dm3] 3R_28972404_SNP [dm6]	C	T	5.329e^-4	1	EXON CR45669
X	8365083	X_8365083_SNP [dm3] X_8471050_SNP [dm6]	A	G	5.330e^-4	1	INTRON CG33223 & 1 other
2R	18829697	2R_18829697_DEL [dm3] 2R_22942174_DEL [dm6]	AATTGAACGCAA...	A	5.346e^-4	1	UTR_5_PRIME CG42694
2L	12609497	2L_12609497_SNP [dm3] 2L_12609497_SNP [dm6]	A	G	5.350e^-4	1	INTRON nub	TF binding site BDTNP1_TFBS_dl
3R	24677390	3R_24677390_SNP [dm3] 3R_28851668_SNP [dm6]	T	C	5.358e^-4	1	INTRON spg
2R	6108766	2R_6108766_SNP [dm3] 2R_10221261_SNP [dm6]	G	A	5.365e^-4	1	INTRON Hr46 & 1 other
X	846434	X_846434_SNP [dm3] X_952401_SNP [dm6]	G	A	5.370e^-4	1	UPSTREAM CG3690 INTERGENIC
3L	6940809	3L_6940809_SNP [dm3] 3L_6947709_SNP [dm6]	G	A	5.371e^-4	1	SYNONYMOUS_CODING tow
2L	7586772	2L_7586772_SNP [dm3] 2L_7586772_SNP [dm6]	G	A	5.372e^-4	1	INTERGENIC
3R	6253427	3R_6253427_SNP [dm3] 3R_10427705_SNP [dm6]	G	A	5.387e^-4	1	INTERGENIC
3R	9215743	3R_9215743_SNP [dm3] 3R_13390021_SNP [dm6]	G	A	5.388e^-4	1	INTRON CCHa2
3R	19382510	3R_19382510_SNP [dm3] 3R_23556788_SNP [dm6]	A	C	5.389e^-4	1	UTR_5_PRIME CG10164 UPSTREAM beat-IV & 1 other
3R	14166050	3R_14166050_SNP [dm3] 3R_18340328_SNP [dm6]	T	G	5.393e^-4	1	INTRON CG15803
2L	18022870	2L_18022870_SNP [dm3] 2L_18022870_SNP [dm6]	C	T	5.398e^-4	1	INTRON rdo
2L	7586867	2L_7586867_SNP [dm3] 2L_7586867_SNP [dm6]	A	T	5.399e^-4	1	INTERGENIC
2L	19434270	2L_19434270_SNP [dm3] 2L_19434270_SNP [dm6]	T	C	5.402e^-4	1	INTRON Rab9
2R	16589337	2R_16589337_SNP [dm3] 2R_20701832_SNP [dm6]	A	G	5.405e^-4	1	INTRON dpr
2L	11814074	2L_11814074_DEL [dm3] 2L_11814074_DEL [dm6]	GG	G	5.408e^-4	1	UPSTREAM CycY DOWNSTREAM Pde1c INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	4037351	2L_4037351_DEL [dm3] 2L_4037351_DEL [dm6]	CTGC	C	5.412e^-4	1	INTRON ed
3L	12589726	3L_12589726_SNP [dm3] 3L_12596626_SNP [dm6]	G	A	5.416e^-4	1	DOWNSTREAM ara INTERGENIC
3L	2137708	3L_2137708_SNP [dm3] 3L_2137708_SNP [dm6]	G	A	5.420e^-4	1	SYNONYMOUS_CODING zormin	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6186331	2L_6186331_SNP [dm3] 2L_6186331_SNP [dm6]	T	C	5.427e^-4	1	INTRON CG34380	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	845762	X_845762_SNP [dm3] X_951729_SNP [dm6]	C	T	5.439e^-4	1	NON_SYNONYMOUS_CODING CG3690
3L	13662178	3L_13662178_SNP [dm3] 3L_13669078_SNP [dm6]	T	C	5.442e^-4	1	INTRON bru-3
3R	1288766	3R_1288766_SNP [dm3] 3R_5463044_SNP [dm6]	C	T	5.442e^-4	1	INTRON PEK	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	3451286	2L_3451286_SNP [dm3] 2L_3451286_SNP [dm6]	T	G	5.446e^-4	1	INTRON Snx1	TF binding site mE1_TFBS_cad
2L	1975583	2L_1975583_SNP [dm3] 2L_1975583_SNP [dm6]	G	A	5.449e^-4	1	UTR_3_PRIME CG15356 DOWNSTREAM Der-1
2L	11620209	2L_11620209_SNP [dm3] 2L_11620209_SNP [dm6]	T	C	5.452e^-4	1	INTRON kek2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	20144833	2L_20144833_SNP [dm3] 2L_20144833_SNP [dm6]	A	G	5.454e^-4	1	INTERGENIC
2L	16192805	2L_16192805_SNP [dm3] 2L_16192805_SNP [dm6]	G	T	5.460e^-4	1	INTERGENIC
3L	14104144	3L_14104144_SNP [dm3] 3L_14111044_SNP [dm6]	A	T	5.463e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	8632758	X_8632758_SNP [dm3] X_8738725_SNP [dm6]	C	G	5.465e^-4	1	INTERGENIC
3L	15961997	3L_15961997_SNP [dm3] 3L_15968897_SNP [dm6]	G	A	5.470e^-4	1	INTRON CG10516	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
2L	15159783	2L_15159783_SNP [dm3] 2L_15159783_SNP [dm6]	C	T	5.473e^-4	1	UPSTREAM CR44770 EXON CR44771	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	5515618	3L_5515618_SNP [dm3] 3L_5522518_SNP [dm6]	A	G	5.477e^-4	1	INTRON Lkr
2L	3363090	2L_3363090_SNP [dm3] 2L_3363090_SNP [dm6]	G	T	5.478e^-4	1	SYNONYMOUS_CODING CG34394	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6174790	2L_6174790_SNP [dm3] 2L_6174790_SNP [dm6]	A	G	5.488e^-4	1	INTERGENIC
2L	15148650	2L_15148650_SNP [dm3] 2L_15148650_SNP [dm6]	G	C	5.489e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	16414134	2L_16414134_SNP [dm3] 2L_16414134_SNP [dm6]	G	A	5.509e^-4	1	INTRON CG5888	TF binding site BDTNP1_TFBS_twi
2R	16698068	2R_16698068_SNP [dm3] 2R_20810563_SNP [dm6]	T	C	5.511e^-4	1	INTERGENIC
3L	7207068	3L_7207068_SNP [dm3] 3L_7213968_SNP [dm6]	G	T	5.513e^-4	1	INTERGENIC
2L	1412183	2L_1412183_SNP [dm3] 2L_1412183_SNP [dm6]	A	G	5.516e^-4	1	INTRON lea	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3R	6179914	3R_6179914_SNP [dm3] 3R_10354192_SNP [dm6]	T	C	5.521e^-4	1	INTRON jumu	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	15105816	X_15105816_SNP [dm3] X_15211783_SNP [dm6]	T	C	5.550e^-4	1	DOWNSTREAM CG5662 INTERGENIC
2L	19651404	2L_19651404_SNP [dm3] 2L_19651404_SNP [dm6]	C	A	5.564e^-4	1	INTRON Lar
3R	6242185	3R_6242185_DEL [dm3] 3R_10416463_DEL [dm6]	AGTTA	T	5.571e^-4	1	UPSTREAM CG6345 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
2R	1212369	2R_1212369_SNP [dm3] 2R_5324864_SNP [dm6]	C	G	5.580e^-4	1	INTRON sxc
3L	17016248	3L_17016248_SNP [dm3] 3L_17023148_SNP [dm6]	A	T	5.581e^-4	1	UTR_3_PRIME a10 UPSTREAM CG6652
3R	23612423	3R_23612423_SNP [dm3] 3R_27786701_SNP [dm6]	C	T	5.606e^-4	1	INTRON CG34353
3L	7955164	3L_7955164_SNP [dm3] 3L_7962064_SNP [dm6]	G	T	5.612e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3L	9370061	3L_9370061_SNP [dm3] 3L_9376961_SNP [dm6]	A	G	5.612e^-4	1	SYNONYMOUS_CODING Hsp26 DOWNSTREAM CG4461 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27081378	3R_27081378_SNP [dm3] 3R_31255656_SNP [dm6]	C	A	5.612e^-4	1	SYNONYMOUS_CODING spn-F UPSTREAM CG1750	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2994684	3L_2994684_SNP [dm3] 3L_2994684_SNP [dm6]	T	C	5.614e^-4	1	UPSTREAM CG2113 INTERGENIC
2L	2083507	2L_2083507_SNP [dm3] 2L_2083507_SNP [dm6]	A	C	5.615e^-4	1	INTRON dpr3 EXON CR44055
2L	20935134	2L_20935134_SNP [dm3] 2L_20935134_SNP [dm6]	C	T	5.617e^-4	1	INTERGENIC
2L	20947595	2L_20947595_SNP [dm3] 2L_20947595_SNP [dm6]	T	A	5.624e^-4	1	EXON CR44606
2L	16473104	2L_16473104_SNP [dm3] 2L_16473104_SNP [dm6]	C	T	5.647e^-4	1	INTRON dac	TF binding site mE1_TFBS_cad
2L	19048843	2L_19048843_SNP [dm3] 2L_19048843_SNP [dm6]	A	T	5.649e^-4	1	UPSTREAM CG10470 DOWNSTREAM Acn & 1 other INTERGENIC
2R	10582015	2R_10582015_SNP [dm3] 2R_14694510_SNP [dm6]	C	T	5.651e^-4	1	INTRON mspo
3L	12062186	3L_12062186_SNP [dm3] 3L_12069086_SNP [dm6]	T	C	5.661e^-4	1	SYNONYMOUS_CODING Sema-5c
2R	14730409	2R_14730409_SNP [dm3] 2R_18842904_SNP [dm6]	T	C	5.664e^-4	1	SYNONYMOUS_CODING CG15099	TF binding site mE1_TFBS_cad
X	2614899	X_2614899_SNP [dm3] X_2720866_SNP [dm6]	T	G	5.667e^-4	1	UPSTREAM CG2701 INTRON fs_1_Yb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8579237	2L_8579237_SNP [dm3] 2L_8579237_SNP [dm6]	T	C	5.667e^-4	1	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	13500349	2L_13500349_SNP [dm3] 2L_13500349_SNP [dm6]	T	C	5.672e^-4	1	UTR_3_PRIME CG42784 DOWNSTREAM B4	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	17607024	3L_17607024_SNP [dm3] 3L_17613924_SNP [dm6]	C	T	5.680e^-4	1	INTRON Eip74EF	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	21196074	3L_21196074_SNP [dm3] 3L_21202974_SNP [dm6]	C	A	5.681e^-4	1	UTR_5_PRIME CG10512 UPSTREAM CG33056 & 1 other INTRON CG33056	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	10256962	2L_10256962_SNP [dm3] 2L_10256962_SNP [dm6]	T	G	5.696e^-4	1	UTR_3_PRIME Pten INTRON Pten
2L	14325014	2L_14325014_SNP [dm3] 2L_14325014_SNP [dm6]	C	T	5.697e^-4	1	SYNONYMOUS_CODING wb	TF binding site mE1_TFBS_cad
3L	12499678	3L_12499678_SNP [dm3] 3L_12506578_SNP [dm6]	C	A	5.698e^-4	1	DOWNSTREAM vih INTRON CG10654	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3088659	X_3088659_SNP [dm3] X_3194626_SNP [dm6]	G	A	5.704e^-4	1	INTRON dnc
2R	16648581	2R_16648581_SNP [dm3] 2R_20761076_SNP [dm6]	T	C	5.710e^-4	1	INTERGENIC
X	18441505	X_18441505_DEL [dm3] X_18547472_DEL [dm6]	GTAG	G	5.711e^-4	1	INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26570758	3R_26570758_SNP [dm3] 3R_30745036_SNP [dm6]	C	T	5.711e^-4	1	SYNONYMOUS_CODING Npc2g DOWNSTREAM CG15543 & 1 other	TF binding site mE1_TFBS_cad
2L	15285494	2L_15285494_SNP [dm3] 2L_15285494_SNP [dm6]	A	G	5.712e^-4	1	SYNONYMOUS_CODING CG15263
2L	21153078	2L_21153078_SNP [dm3] 2L_21153078_SNP [dm6]	A	G	5.725e^-4	1	INTERGENIC
2R	17135631	2R_17135631_DEL [dm3] 2R_21248126_DEL [dm6]	CC	C	5.758e^-4	1	INTRON ASPP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5437060	X_5437060_SNP [dm3] X_5543027_SNP [dm6]	C	G	5.760e^-4	1	INTRON Vsx2
3R	14259040	3R_14259040_SNP [dm3] 3R_18433318_SNP [dm6]	C	G	5.768e^-4	1	INTRON fru
X	5437023	X_5437023_SNP [dm3] X_5542990_SNP [dm6]	T	G	5.769e^-4	1	INTRON Vsx2
2L	6175393	2L_6175393_SNP [dm3] 2L_6175393_SNP [dm6]	C	T	5.775e^-4	1	INTERGENIC
3R	27649517	3R_27649517_SNP [dm3] 3R_31823795_SNP [dm6]	A	G	5.776e^-4	1	INTRON RhoGAP100F
2R	15113037	2R_15113037_SNP [dm3] 2R_19225532_SNP [dm6]	T	A	5.777e^-4	1	INTRON hppy	TF binding site mE1_TFBS_chinmo
X	2534613	X_2534613_SNP [dm3] X_2640580_SNP [dm6]	T	G	5.781e^-4	1	UPSTREAM sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	16098077	X_16098077_SNP [dm3] X_16204044_SNP [dm6]	C	A	5.785e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	12187969	2R_12187969_SNP [dm3] 2R_16300464_SNP [dm6]	T	A	5.790e^-4	1	EXON CR45232
3R	14259366	3R_14259366_SNP [dm3] 3R_18433644_SNP [dm6]	A	T	5.796e^-4	1	INTRON fru
2L	10344318	2L_10344318_SNP [dm3] 2L_10344318_SNP [dm6]	T	A	5.803e^-4	1	UPSTREAM CG5022 DOWNSTREAM Sps2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7586792	2L_7586792_SNP [dm3] 2L_7586792_SNP [dm6]	T	A	5.805e^-4	1	INTERGENIC
2R	11288789	2R_11288789_SNP [dm3] 2R_15401284_SNP [dm6]	T	C	5.812e^-4	1	UTR_5_PRIME CG43729
2L	8830932	2L_8830932_SNP [dm3] 2L_8830932_SNP [dm6]	G	T	5.821e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16887041	3R_16887041_SNP [dm3] 3R_21061319_SNP [dm6]	T	C	5.839e^-4	1	UPSTREAM Mvl DOWNSTREAM Cortactin INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2R	12825821	2R_12825821_SNP [dm3] 2R_16938316_SNP [dm6]	T	G	5.844e^-4	1	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
2L	6374110	2L_6374110_SNP [dm3] 2L_6374110_SNP [dm6]	G	A	5.847e^-4	1	SYNONYMOUS_CODING slam	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1303561	2R_1303561_SNP [dm3] 2R_5416056_SNP [dm6]	T	C	5.856e^-4	1	UPSTREAM laccase2 INTRON laccase2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_kn
2L	2407388	2L_2407388_SNP [dm3] 2L_2407388_SNP [dm6]	G	A	5.863e^-4	1	INTRON VGlut
X	21194128	X_21194128_SNP [dm3] X_21323101_SNP [dm6]	C	T	5.868e^-4	1	UPSTREAM CG1486 INTRON Dd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h
2L	1285419	2L_1285419_SNP [dm3] 2L_1285419_SNP [dm6]	C	T	5.868e^-4	1	SYNONYMOUS_CODING robo3
2L	14791165	2L_14791165_SNP [dm3] 2L_14791165_SNP [dm6]	T	C	5.876e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	12825742	2R_12825742_SNP [dm3] 2R_16938237_SNP [dm6]	T	A	5.883e^-4	1	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
3R	14429852	3R_14429852_SNP [dm3] 3R_18604130_SNP [dm6]	A	G	5.885e^-4	1	INTRON qin & 1 other
2R	19621392	2R_19621392_SNP [dm3] 2R_23733869_SNP [dm6]	A	G	5.885e^-4	1	UTR_3_PRIME Sesn DOWNSTREAM mir-4979 & 1 other
2R	16589335	2R_16589335_SNP [dm3] 2R_20701830_SNP [dm6]	A	G	5.885e^-4	1	INTRON dpr
3L	1807502	3L_1807502_SNP [dm3] 3L_1807502_SNP [dm6]	A	C	5.888e^-4	1	UPSTREAM CR45687 & 1 other DOWNSTREAM CG42676 INTERGENIC
3R	18990840	3R_18990840_SNP [dm3] 3R_23165118_SNP [dm6]	A	G	5.896e^-4	1	INTERGENIC
2R	13551609	2R_13551609_SNP [dm3] 2R_17664104_SNP [dm6]	T	A	5.897e^-4	1	INTRON CCHa1-R
2L	20924168	2L_20924168_SNP [dm3] 2L_20924168_SNP [dm6]	G	T	5.899e^-4	1	SPLICE_SITE_ACCEPTOR CR33318 DOWNSTREAM RPA2 INTRON CR33318
2L	2614603	2L_2614603_SNP [dm3] 2L_2614603_SNP [dm6]	C	A	5.910e^-4	1	INTERGENIC
3R	22350451	3R_22350451_SNP [dm3] 3R_26524729_SNP [dm6]	T	C	5.912e^-4	1	INTRON plum	TF binding site mE1_TFBS_cnc
2L	19501468	2L_19501468_SNP [dm3] 2L_19501468_SNP [dm6]	C	T	5.926e^-4	1	NON_SYNONYMOUS_CODING Top3alpha DOWNSTREAM CG10188
3L	12012553	3L_12012553_SNP [dm3] 3L_12019453_SNP [dm6]	G	A	5.927e^-4	1	INTRON rols
3R	19412293	3R_19412293_SNP [dm3] 3R_23586571_SNP [dm6]	T	C	5.931e^-4	1	DOWNSTREAM CG10182 INTERGENIC
3R	6293287	3R_6293287_SNP [dm3] 3R_10467565_SNP [dm6]	A	T	5.942e^-4	1	INTERGENIC
X	10059536	X_10059536_SNP [dm3] X_10165503_SNP [dm6]	C	T	5.944e^-4	1	INTRON CR44894 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	11178983	3L_11178983_SNP [dm3] 3L_11185883_SNP [dm6]	T	C	5.957e^-4	1	INTRON GlcAT-P
3L	16427322	3L_16427322_SNP [dm3] 3L_16434222_SNP [dm6]	C	T	5.963e^-4	1	INTRON CG33158 & 1 other
2R	17652433	2R_17652433_SNP [dm3] 2R_21764928_SNP [dm6]	G	T	5.976e^-4	1	UPSTREAM CR43983 & 1 other DOWNSTREAM CR43984 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	1228860	2R_1228860_SNP [dm3] 2R_5341355_SNP [dm6]	A	T	5.977e^-4	1	UPSTREAM CG10465 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	1993577	2R_1993577_SNP [dm3] 2R_6106072_SNP [dm6]	G	A	5.994e^-4	1	INTRON EcR
3L	12429918	3L_12429918_SNP [dm3] 3L_12436818_SNP [dm6]	G	A	6.019e^-4	1	INTERGENIC
2L	4866465	2L_4866465_SNP [dm3] 2L_4866465_SNP [dm6]	G	T	6.023e^-4	1	INTRON pog
2R	7276122	2R_7276122_SNP [dm3] 2R_11388617_SNP [dm6]	A	T	6.024e^-4	1	UTR_5_PRIME CG30022 INTRON sprt	TF binding site mE1_TFBS_sens
2L	15144158	2L_15144158_SNP [dm3] 2L_15144158_SNP [dm6]	G	C	6.025e^-4	1	INTERGENIC
2R	12825716	2R_12825716_SNP [dm3] 2R_16938211_SNP [dm6]	C	T	6.025e^-4	1	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
2L	16374411	2L_16374411_INS [dm3] 2L_16374411_INS [dm6]	A	AA	6.028e^-4	1	INTERGENIC
X	14042883	X_14042883_SNP [dm3] X_14148850_SNP [dm6]	T	A	6.040e^-4	1	INTERGENIC
X	845520	X_845520_SNP [dm3] X_951487_SNP [dm6]	A	G	6.053e^-4	1	SYNONYMOUS_CODING CG3690	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2120038	2L_2120038_SNP [dm3] 2L_2120038_SNP [dm6]	G	A	6.061e^-4	1	INTERGENIC
2R	16585415	2R_16585415_SNP [dm3] 2R_20697910_SNP [dm6]	T	C	6.072e^-4	1	UPSTREAM dpr INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	16798692	X_16798692_SNP [dm3] X_16904659_SNP [dm6]	C	T	6.091e^-4	1	EXON CR44754
2L	19866861	2L_19866861_SNP [dm3] 2L_19866861_SNP [dm6]	C	T	6.094e^-4	1	INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	18725055	3L_18725055_SNP [dm3] 3L_18731955_SNP [dm6]	T	A	6.096e^-4	1	INTERGENIC
2L	8283458	2L_8283458_SNP [dm3] 2L_8283458_SNP [dm6]	T	G	6.111e^-4	1	SYNONYMOUS_CODING Btk29A UTR_5_PRIME Btk29A
3L	15324417	3L_15324417_SNP [dm3] 3L_15331317_SNP [dm6]	T	C	6.125e^-4	1	UPSTREAM CR43247 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15142683	2L_15142683_SNP [dm3] 2L_15142683_SNP [dm6]	A	C	6.128e^-4	1	INTERGENIC
2L	8579520	2L_8579520_SNP [dm3] 2L_8579520_SNP [dm6]	G	A	6.129e^-4	1	INTRON Sema-1a
3L	4736929	3L_4736929_SNP [dm3] 3L_4736929_SNP [dm6]	T	C	6.159e^-4	1	INTRON RhoGEF64C
3L	12487091	3L_12487091_SNP [dm3] 3L_12493991_SNP [dm6]	C	T	6.186e^-4	1	DOWNSTREAM CR45682 INTRON CG10657	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	17320827	X_17320827_SNP [dm3] X_17426794_SNP [dm6]	C	T	6.188e^-4	1	NON_SYNONYMOUS_CODING CG5613 INTRON CG12994
2R	13806969	2R_13806969_SNP [dm3] 2R_17919464_SNP [dm6]	T	A	6.189e^-4	1	INTRON Elk
X	7911133	X_7911133_SNP [dm3] X_8017100_SNP [dm6]	T	C	6.189e^-4	1	INTRON Tbh
2L	1186529	2L_1186529_SNP [dm3] 2L_1186529_SNP [dm6]	G	T	6.191e^-4	1	DOWNSTREAM Tgt INTRON CG5001	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	1308354	2R_1308354_SNP [dm3] 2R_5420849_SNP [dm6]	T	G	6.193e^-4	1	INTRON laccase2
2R	1246810	2R_1246810_SNP [dm3] 2R_5359305_SNP [dm6]	A	G	6.198e^-4	1	INTERGENIC	transposable element FlyBase
X	5611769	X_5611769_SNP [dm3] X_5717736_SNP [dm6]	C	T	6.207e^-4	1	UTR_5_PRIME CG33080	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4986072	2L_4986072_SNP [dm3] 2L_4986072_SNP [dm6]	T	C	6.208e^-4	1	SYNONYMOUS_CODING CG34126	TF binding site mE1_TFBS_cad
3L	797694	3L_797694_SNP [dm3] 3L_797694_SNP [dm6]	G	A	6.208e^-4	1	INTERGENIC
2R	12825740	2R_12825740_SNP [dm3] 2R_16938235_SNP [dm6]	G	A	6.208e^-4	1	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
2R	10632398	2R_10632398_SNP [dm3] 2R_14744893_SNP [dm6]	C	T	6.221e^-4	1	INTRON CG12858
2R	12187912	2R_12187912_SNP [dm3] 2R_16300407_SNP [dm6]	T	C	6.240e^-4	1	EXON CR45232
2R	16228091	2R_16228091_SNP [dm3] 2R_20340586_SNP [dm6]	C	T	6.256e^-4	1	INTERGENIC
X	4860275	X_4860275_SNP [dm3] X_4966242_SNP [dm6]	T	G	6.256e^-4	1	INTRON CR44833	regulatory region REDfly_CRMs
2L	14084333	2L_14084333_SNP [dm3] 2L_14084333_SNP [dm6]	A	G	6.268e^-4	1	INTRON nAChRalpha5
X	5734876	X_5734876_SNP [dm3] X_5840843_SNP [dm6]	A	T	6.273e^-4	1	DOWNSTREAM CG15765 INTERGENIC
3L	15311985	3L_15311985_SNP [dm3] 3L_15318885_SNP [dm6]	C	A	6.282e^-4	1	INTERGENIC
2L	14120266	2L_14120266_SNP [dm3] 2L_14120266_SNP [dm6]	G	T	6.287e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	15105762	X_15105762_DEL [dm3] X_15211729_DEL [dm6]	TTACTGGCGAGTC...	T	6.293e^-4	1	DOWNSTREAM CG5662 INTERGENIC
2L	4736841	2L_4736841_SNP [dm3] 2L_4736841_SNP [dm6]	C	G	6.301e^-4	1	INTRON CG15630
2R	17385030	2R_17385030_SNP [dm3] 2R_21497525_SNP [dm6]	C	T	6.304e^-4	1	UPSTREAM Fkbp14 INTRON Fkbp14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	11425586	2L_11425586_SNP [dm3] 2L_11425586_SNP [dm6]	C	G	6.304e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	3318276	2L_3318276_SNP [dm3] 2L_3318276_SNP [dm6]	G	A	6.309e^-4	1	SYNONYMOUS_CODING CG3326 DOWNSTREAM CG3277
2R	18474916	2R_18474916_SNP [dm3] 2R_22587411_SNP [dm6]	C	T	6.319e^-4	1	INTRON dnr1
3L	12533817	3L_12533817_SNP [dm3] 3L_12540717_SNP [dm6]	T	G	6.320e^-4	1	UPSTREAM CR43612 INTRON sowah	TF binding site mE1_TFBS_Kr
3R	20678027	3R_20678027_SNP [dm3] 3R_24852305_SNP [dm6]	T	G	6.321e^-4	1	SYNONYMOUS_CODING nct DOWNSTREAM CG7006	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	27258106	3R_27258106_SNP [dm3] 3R_31432384_SNP [dm6]	G	C	6.328e^-4	1	INTRON Gprk2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	20242137	2L_20242137_SNP [dm3] 2L_20242137_SNP [dm6]	C	A	6.329e^-4	1	INTERGENIC
2L	6377415	2L_6377415_SNP [dm3] 2L_6377415_SNP [dm6]	T	G	6.338e^-4	1	DOWNSTREAM CG42368 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12297091	2R_12297091_SNP [dm3] 2R_16409586_SNP [dm6]	C	T	6.342e^-4	1	INTRON Sema-2b
2L	15794413	2L_15794413_SNP [dm3] 2L_15794413_SNP [dm6]	A	G	6.349e^-4	1	INTERGENIC
3L	15428915	3L_15428915_SNP [dm3] 3L_15435815_SNP [dm6]	C	A	6.355e^-4	1	INTERGENIC
3R	14296640	3R_14296640_SNP [dm3] 3R_18470918_SNP [dm6]	A	T	6.373e^-4	1	INTRON fru
3R	27650401	3R_27650401_INS [dm3] 3R_31824679_INS [dm6]	C	CAC	6.383e^-4	1	INTRON RhoGAP100F
2R	15445245	2R_15445245_SNP [dm3] 2R_19557740_SNP [dm6]	T	A	6.408e^-4	1	INTRON sm
2L	17545819	2L_17545819_SNP [dm3] 2L_17545819_SNP [dm6]	T	C	6.413e^-4	1	INTERGENIC
3R	27649794	3R_27649794_SNP [dm3] 3R_31824072_SNP [dm6]	A	T	6.415e^-4	1	INTRON RhoGAP100F
3R	14259106	3R_14259106_SNP [dm3] 3R_18433384_SNP [dm6]	A	G	6.422e^-4	1	INTRON fru
2L	11652317	2L_11652317_DEL [dm3] 2L_11652317_DEL [dm6]	AAAATAAC	A	6.429e^-4	1	UPSTREAM CG4983 & 1 other INTERGENIC
2L	17043131	2L_17043131_SNP [dm3] 2L_17043131_SNP [dm6]	A	G	6.430e^-4	1	EXON CR43802
3R	27638157	3R_27638157_SNP [dm3] 3R_31812435_SNP [dm6]	C	T	6.437e^-4	1	UPSTREAM RhoGAP100F & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
3L	9370109	3L_9370109_SNP [dm3] 3L_9377009_SNP [dm6]	G	A	6.437e^-4	1	SYNONYMOUS_CODING Hsp26 DOWNSTREAM CG4461 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19227050	3R_19227050_SNP [dm3] 3R_23401328_SNP [dm6]	G	T	6.439e^-4	1	INTERGENIC
X	7971821	X_7971821_SNP [dm3] X_8077788_SNP [dm6]	C	G	6.440e^-4	1	SYNONYMOUS_CODING CG1571 DOWNSTREAM CG2254	TF binding site mE1_TFBS_cad
3R	7705264	3R_7705264_SNP [dm3] 3R_11879542_SNP [dm6]	T	C	6.451e^-4	1	SYNONYMOUS_CODING sad DOWNSTREAM CG6962	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	6507863	3R_6507863_SNP [dm3] 3R_10682141_SNP [dm6]	C	A	6.457e^-4	1	UPSTREAM CR44230 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8517696	3L_8517696_SNP [dm3] 3L_8524596_SNP [dm6]	G	T	6.458e^-4	1	SYNONYMOUS_CODING GstO1 UPSTREAM foi	TF binding site BDTNP1_TFBS_dl
2R	10100481	2R_10100481_SNP [dm3] 2R_14212976_SNP [dm6]	C	A	6.460e^-4	1	UPSTREAM Sox15 INTERGENIC	TF binding site mE1_TFBS_Trl
X	4757464	X_4757464_SNP [dm3] X_4863431_SNP [dm6]	G	T	6.462e^-4	1	INTRON CG42594
3R	5963860	3R_5963860_INS [dm3] 3R_10138138_INS [dm6]	T	TA	6.468e^-4	1	INTRON tws	TF binding site mE1_TFBS_bab1
2L	15285324	2L_15285324_SNP [dm3] 2L_15285324_SNP [dm6]	G	A	6.469e^-4	1	NON_SYNONYMOUS_CODING CG15263
X	5674096	X_5674096_SNP [dm3] X_5780063_SNP [dm6]	T	G	6.479e^-4	1	NON_SYNONYMOUS_CODING CG3108 INTRON CG42699
2L	9895488	2L_9895488_SNP [dm3] 2L_9895488_SNP [dm6]	G	A	6.481e^-4	1	SYNONYMOUS_CODING Bka UPSTREAM snoRNA:Me18S-G1620 & 2 others DOWNSTREAM RpS2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	12288390	3L_12288390_SNP [dm3] 3L_12295290_SNP [dm6]	C	T	6.483e^-4	1	INTRON CG4328
2L	3364226	2L_3364226_SNP [dm3] 2L_3364226_SNP [dm6]	A	T	6.503e^-4	1	NON_SYNONYMOUS_CODING CG34394	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27631354	3R_27631354_SNP [dm3] 3R_31805632_SNP [dm6]	A	G	6.507e^-4	1	NON_SYNONYMOUS_CODING CG1971 UPSTREAM CG1971 & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	27633822	3R_27633822_SNP [dm3] 3R_31808100_SNP [dm6]	C	A	6.507e^-4	1	SYNONYMOUS_CODING CG11576	TF binding site mE1_TFBS_cad
3R	27634570	3R_27634570_DEL [dm3] 3R_31808848_DEL [dm6]	ATAAACCTCACACGAATCTT...	A	6.507e^-4	1	INTRON CG11576
3R	27638941	3R_27638941_SNP [dm3] 3R_31813219_SNP [dm6]	C	T	6.507e^-4	1	START_GAINED RhoGAP100F UTR_5_PRIME RhoGAP100F UPSTREAM FeCH	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	13339093	2L_13339093_SNP [dm3] 2L_13339093_SNP [dm6]	C	A	6.512e^-4	1	INTERGENIC
2R	1244328	2R_1244328_SNP [dm3] 2R_5356823_SNP [dm6]	A	G	6.522e^-4	1	INTERGENIC	transposable element FlyBase
2R	8254463	2R_8254463_SNP [dm3] 2R_12366958_SNP [dm6]	C	T	6.529e^-4	1	UPSTREAM CG33012 DOWNSTREAM CR33013 INTERGENIC
2L	2938991	2L_2938991_SNP [dm3] 2L_2938991_SNP [dm6]	G	A	6.534e^-4	1	INTRON lilli	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	8244756	3L_8244756_SNP [dm3] 3L_8251656_SNP [dm6]	C	T	6.542e^-4	1	INTRON Dscam4
2R	8705154	2R_8705154_SNP [dm3] 2R_12817649_SNP [dm6]	G	C	6.549e^-4	1	INTERGENIC
2L	11631858	2L_11631858_SNP [dm3] 2L_11631858_SNP [dm6]	C	G	6.562e^-4	1	INTERGENIC
2R	4881550	2R_4881550_SNP [dm3] 2R_8994045_SNP [dm6]	G	A	6.565e^-4	1	SPLICE_SITE_REGION Np INTRON Np	TF binding site mE1_TFBS_chinmo
3R	6507828	3R_6507828_SNP [dm3] 3R_10682106_SNP [dm6]	A	T	6.571e^-4	1	UPSTREAM CR44230 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15132897	2L_15132897_SNP [dm3] 2L_15132897_SNP [dm6]	C	A	6.578e^-4	1	UPSTREAM tRNA:L:35C INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	6287123	3L_6287123_SNP [dm3] 3L_6294023_SNP [dm6]	T	C	6.580e^-4	1	INTERGENIC
2L	16111202	2L_16111202_SNP [dm3] 2L_16111202_SNP [dm6]	G	A	6.581e^-4	1	INTERGENIC
3R	20496111	3R_20496111_SNP [dm3] 3R_24670389_SNP [dm6]	G	C	6.589e^-4	1	INTRON slo	TF binding site mE1_TFBS_cad
2L	1977424	2L_1977424_SNP [dm3] 2L_1977424_SNP [dm6]	A	G	6.606e^-4	1	SYNONYMOUS_CODING CG15356	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1189957	2L_1189957_SNP [dm3] 2L_1189957_SNP [dm6]	A	G	6.611e^-4	1	INTRON CG5001
3R	27649599	3R_27649599_SNP [dm3] 3R_31823877_SNP [dm6]	A	T	6.623e^-4	1	INTRON RhoGAP100F
2R	5136118	2R_5136118_SNP [dm3] 2R_9248613_SNP [dm6]	A	C	6.630e^-4	1	INTERGENIC
3R	1952529	3R_1952529_SNP [dm3] 3R_6126807_SNP [dm6]	G	C	6.635e^-4	1	DOWNSTREAM CR43487 EXON CR43486
3R	18809127	3R_18809127_SNP [dm3] 3R_22983405_SNP [dm6]	G	A	6.641e^-4	1	INTRON Nha2
2R	18897241	2R_18897241_SNP [dm3] 2R_23009718_SNP [dm6]	T	G	6.643e^-4	1	INTRON twi
2R	19706613	2R_19706613_SNP [dm3] 2R_23819090_SNP [dm6]	G	C	6.645e^-4	1	UPSTREAM CG4797 INTERGENIC	TF binding site mE1_TFBS_kn
3R	19603074	3R_19603074_SNP [dm3] 3R_23777352_SNP [dm6]	G	C	6.646e^-4	1	UTR_3_PRIME Nup98-96 INTRON Nup98-96
2L	19694078	2L_19694078_SNP [dm3] 2L_19694078_SNP [dm6]	C	T	6.655e^-4	1	INTRON Lar
2R	12825729	2R_12825729_SNP [dm3] 2R_16938224_SNP [dm6]	G	A	6.659e^-4	1	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
2R	12825731	2R_12825731_SNP [dm3] 2R_16938226_SNP [dm6]	T	C	6.659e^-4	1	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
3R	20759254	3R_20759254_SNP [dm3] 3R_24933532_SNP [dm6]	T	C	6.659e^-4	1	NON_SYNONYMOUS_CODING CG11771	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8172371	2L_8172371_SNP [dm3] 2L_8172371_SNP [dm6]	T	G	6.680e^-4	1	INTRON Piezo
3R	22993342	3R_22993342_SNP [dm3] 3R_27167620_SNP [dm6]	T	A	6.681e^-4	1	DOWNSTREAM spn-D INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
2R	5136112	2R_5136112_SNP [dm3] 2R_9248607_SNP [dm6]	A	T	6.693e^-4	1	INTERGENIC
3R	18983786	3R_18983786_INS [dm3] 3R_23158064_INS [dm6]	A	AAGAA	6.700e^-4	1	UTR_3_PRIME VhaAC39-2 UPSTREAM unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	3374264	2R_3374264_SNP [dm3] 2R_7486759_SNP [dm6]	C	A	6.702e^-4	1	UPSTREAM wech INTRON wech	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	12808921	2L_12808921_SNP [dm3] 2L_12808921_SNP [dm6]	G	T	6.710e^-4	1	UPSTREAM CR43818 INTERGENIC
3L	9192757	3L_9192757_SNP [dm3] 3L_9199657_SNP [dm6]	A	G	6.727e^-4	1	INTERGENIC
3L	8624090	3L_8624090_SNP [dm3] 3L_8630990_SNP [dm6]	C	T	6.732e^-4	1	DOWNSTREAM Cdc6 INTRON Zasp66
3L	15698630	3L_15698630_DEL [dm3] 3L_15705530_DEL [dm6]	AGGAA	A	6.733e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
X	8069412	X_8069412_SNP [dm3] X_8175379_SNP [dm6]	G	A	6.746e^-4	1	SYNONYMOUS_CODING slpr	TF binding site mE1_TFBS_sens
2L	12580275	2L_12580275_DEL [dm3] 2L_12580275_DEL [dm6]	CC	C	6.747e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cnc
2L	5698297	2L_5698297_DEL [dm3] 2L_5698297_DEL [dm6]	TC	T	6.748e^-4	1	INTERGENIC
2L	20950971	2L_20950971_SNP [dm3] 2L_20950971_SNP [dm6]	A	G	6.751e^-4	1	INTERGENIC
3R	18983784	3R_18983784_SNP [dm3] 3R_23158062_SNP [dm6]	A	T	6.753e^-4	1	UTR_3_PRIME VhaAC39-2 UPSTREAM unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	9715052	2L_9715052_SNP [dm3] 2L_9715052_SNP [dm6]	C	G	6.765e^-4	1	UTR_3_PRIME Nckx30C	TF binding site BDTNP1_TFBS_dl
3L	6668805	3L_6668805_SNP [dm3] 3L_6675705_SNP [dm6]	G	A	6.778e^-4	1	INTERGENIC
2R	12373993	2R_12373993_SNP [dm3] 2R_16486488_SNP [dm6]	C	T	6.783e^-4	1	UPSTREAM CG15712 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2R	9051929	2R_9051929_SNP [dm3] 2R_13164424_SNP [dm6]	T	G	6.790e^-4	1	SYNONYMOUS_CODING GLaz UPSTREAM CG15870 DOWNSTREAM Nrk
3R	22758941	3R_22758941_SNP [dm3] 3R_26933219_SNP [dm6]	G	A	6.793e^-4	1	INTRON sda
2L	20928187	2L_20928187_SNP [dm3] 2L_20928187_SNP [dm6]	C	G	6.795e^-4	1	UPSTREAM CR33319 & 1 other INTERGENIC	transposable element FlyBase
3L	7254056	3L_7254056_SNP [dm3] 3L_7260956_SNP [dm6]	T	C	6.796e^-4	1	INTRON CG14830
2L	15285467	2L_15285467_SNP [dm3] 2L_15285467_SNP [dm6]	T	C	6.803e^-4	1	SYNONYMOUS_CODING CG15263
2L	13549285	2L_13549285_SNP [dm3] 2L_13549285_SNP [dm6]	G	T	6.836e^-4	1	UTR_5_PRIME B4 UPSTREAM kuz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
X	17241902	X_17241902_SNP [dm3] X_17347869_SNP [dm6]	C	T	6.842e^-4	1	INTERGENIC
2R	1250339	2R_1250339_SNP [dm3] 2R_5362834_SNP [dm6]	C	A	6.846e^-4	1	UTR_5_PRIME CG10417 UPSTREAM CR42646	TF binding site BDTNP1_TFBS_dl
2R	19610780	2R_19610780_SNP [dm3] 2R_23723257_SNP [dm6]	G	A	6.849e^-4	1	INTRON Sesn
3L	7125863	3L_7125863_SNP [dm3] 3L_7132763_SNP [dm6]	T	C	6.853e^-4	1	INTRON Dbi	TF binding site BDTNP1_TFBS_da
2R	12825823	2R_12825823_SNP [dm3] 2R_16938318_SNP [dm6]	G	T	6.862e^-4	1	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
3L	21225763	3L_21225763_SNP [dm3] 3L_21232663_SNP [dm6]	C	T	6.872e^-4	1	INTRON Eip78C
X	16098139	X_16098139_SNP [dm3] X_16204106_SNP [dm6]	T	A	6.874e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	824604	X_824604_SNP [dm3] X_930571_SNP [dm6]	C	A	6.876e^-4	1	UPSTREAM CG3708 DOWNSTREAM CG3706 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	9121536	3L_9121536_SNP [dm3] 3L_9128436_SNP [dm6]	G	A	6.885e^-4	1	INTRON bol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	14605760	3L_14605760_SNP [dm3] 3L_14612660_SNP [dm6]	A	G	6.886e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	19785843	3R_19785843_SNP [dm3] 3R_23960121_SNP [dm6]	C	T	6.895e^-4	1	UTR_3_PRIME AP-1sigma INTRON AP-1sigma
2L	6179587	2L_6179587_INS [dm3] 2L_6179587_INS [dm6]	A	AA	6.912e^-4	1	UTR_5_PRIME CG34380	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	2616081	X_2616081_SNP [dm3] X_2722048_SNP [dm6]	G	A	6.913e^-4	1	SYNONYMOUS_CODING fs_1_Yb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10118279	X_10118279_SNP [dm3] X_10224246_SNP [dm6]	T	C	6.915e^-4	1	INTRON CG34408	TF binding site mE1_TFBS_HSA
2R	1316513	2R_1316513_SNP [dm3] 2R_5429008_SNP [dm6]	G	A	6.917e^-4	1	INTRON laccase2	transposable element FlyBase
2R	15112555	2R_15112555_SNP [dm3] 2R_19225050_SNP [dm6]	C	A	6.931e^-4	1	INTRON hppy	TF binding site mE1_TFBS_chinmo
2L	13368027	2L_13368027_SNP [dm3] 2L_13368027_SNP [dm6]	A	G	6.931e^-4	1	SYNONYMOUS_CODING Tap42 DOWNSTREAM CG6523	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17038418	2L_17038418_SNP [dm3] 2L_17038418_SNP [dm6]	T	G	6.932e^-4	1	INTERGENIC

By genomic position
Variant impact
Gene name

se_ChillComaRec phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results