DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.484e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	4.9247	0.0852

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2118 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	4371850	2L_4371850_SNP [dm3] 2L_4371850_SNP [dm6]	A	C	2.912e^-7	0.546	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
X	9224651	X_9224651_INS [dm3] X_9330618_INS [dm6]	C	CATTCCTCAATTAC...	9.284e^-7	0.789	UPSTREAM CG34450 DOWNSTREAM CG34449 INTRON CG34449
2L	2685254	2L_2685254_SNP [dm3] 2L_2685254_SNP [dm6]	T	C	1.575e^-6	0.789	INTRON CG31690
2L	10526140	2L_10526140_SNP [dm3] 2L_10526140_SNP [dm6]	T	A	1.682e^-6	0.789	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	2685246	2L_2685246_SNP [dm3] 2L_2685246_SNP [dm6]	A	C	3.604e^-6	0.852	INTRON CG31690
X	11740253	X_11740253_SNP [dm3] X_11846220_SNP [dm6]	C	T	3.977e^-6	0.852	UPSTREAM CG15740 INTERGENIC	TF binding site BDTNP1_TFBS_sna
X	6159600	X_6159600_DEL [dm3] X_6265567_DEL [dm6]	TTAGTT	T	5.193e^-6	0.852	INTRON schlank	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7095110	3R_7095110_SNP [dm3] 3R_11269388_SNP [dm6]	T	C	5.518e^-6	0.852	DOWNSTREAM CR31386 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	9224573	X_9224573_SNP [dm3] X_9330540_SNP [dm6]	A	C	6.653e^-6	0.852	UPSTREAM CG34450 DOWNSTREAM CG34449 INTRON CG34449
2L	4737803	2L_4737803_SNP [dm3] 2L_4737803_SNP [dm6]	T	G	6.963e^-6	0.852	INTRON CG15630	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	9224569	X_9224569_INS [dm3] X_9330536_INS [dm6]	C	CTTTGTGTGTAGGAC...	7.746e^-6	0.852	UPSTREAM CG34450 DOWNSTREAM CG34449 INTRON CG34449
2L	3165750	2L_3165750_SNP [dm3] 2L_3165750_SNP [dm6]	A	G	8.432e^-6	0.852	INTRON Hydr2	TF binding site BDTNP1_TFBS_da
X	11952680	X_11952680_SNP [dm3] X_12058647_SNP [dm6]	G	C	8.438e^-6	0.852	INTRON CR43960 & 1 other
2L	4371314	2L_4371314_SNP [dm3] 2L_4371314_SNP [dm6]	A	C	8.526e^-6	0.852	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2L	2685239	2L_2685239_SNP [dm3] 2L_2685239_SNP [dm6]	A	C	8.924e^-6	0.852	INTRON CG31690
3R	10261796	3R_10261796_SNP [dm3] 3R_14436074_SNP [dm6]	G	A	8.979e^-6	0.852	INTRON cv-c
3L	10432425	3L_10432425_SNP [dm3] 3L_10439325_SNP [dm6]	A	C	9.016e^-6	0.852	INTERGENIC	transposable element FlyBase
2L	4737839	2L_4737839_SNP [dm3] 2L_4737839_SNP [dm6]	A	G	9.760e^-6	0.852	INTRON CG15630	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	12570683	2L_12570683_SNP [dm3] 2L_12570683_SNP [dm6]	T	G	1.048e^-5	0.852	DOWNSTREAM CR44597 EXON CR44598
3R	7093944	3R_7093944_SNP [dm3] 3R_11268222_SNP [dm6]	T	C	1.159e^-5	0.852	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	17458476	3L_17458476_SNP [dm3] 3L_17465376_SNP [dm6]	C	T	1.186e^-5	0.852	UPSTREAM CG7603 INTERGENIC
3R	15832996	3R_15832996_SNP [dm3] 3R_20007274_SNP [dm6]	T	C	1.242e^-5	0.852	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	20571200	3L_20571200_SNP [dm3] 3L_20578100_SNP [dm6]	C	A	1.266e^-5	0.852	INTERGENIC
3R	23856601	3R_23856601_SNP [dm3] 3R_28030879_SNP [dm6]	G	A	1.397e^-5	0.852	SYNONYMOUS_CODING CG34362	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	9224695	X_9224695_SNP [dm3] X_9330662_SNP [dm6]	A	G	1.406e^-5	0.852	UPSTREAM CG34450 DOWNSTREAM CG34449 INTRON CG34449
2L	8624504	2L_8624504_SNP [dm3] 2L_8624504_SNP [dm6]	T	C	1.476e^-5	0.852	INTRON Sema-1a	TF binding site BDTNP1_TFBS_twi
3L	6918599	3L_6918599_SNP [dm3] 3L_6925499_SNP [dm6]	G	A	1.477e^-5	0.852	INTERGENIC
3R	23055674	3R_23055674_SNP [dm3] 3R_27229952_SNP [dm6]	T	C	1.528e^-5	0.852	SYNONYMOUS_CODING CG31064 UPSTREAM CG42814 DOWNSTREAM CG31064	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14641706	2R_14641706_SNP [dm3] 2R_18754201_SNP [dm6]	A	T	1.546e^-5	0.852	UTR_3_PRIME Hs3st-A UPSTREAM Cyp12b2
2R	17992459	2R_17992459_SNP [dm3] 2R_22104954_SNP [dm6]	G	A	1.589e^-5	0.852	SYNONYMOUS_CODING CG6613
2L	2581910	2L_2581910_SNP [dm3] 2L_2581910_SNP [dm6]	T	G	1.630e^-5	0.852	SYNONYMOUS_CODING Drp1 DOWNSTREAM Arpc5	TF binding site mE1_TFBS_sens
2R	19882908	2R_19882908_SNP [dm3] 2R_23995385_SNP [dm6]	A	G	1.663e^-5	0.852	UPSTREAM CG3860 DOWNSTREAM Unc-89 INTERGENIC
2L	4738122	2L_4738122_SNP [dm3] 2L_4738122_SNP [dm6]	G	T	1.721e^-5	0.852	INTRON CG15630	TF binding site mE1_TFBS_inv
2L	2685245	2L_2685245_SNP [dm3] 2L_2685245_SNP [dm6]	T	C	1.795e^-5	0.852	INTRON CG31690
X	17302405	X_17302405_SNP [dm3] X_17408372_SNP [dm6]	T	C	1.809e^-5	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26208894	3R_26208894_SNP [dm3] 3R_30383172_SNP [dm6]	A	T	1.836e^-5	0.852	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3753356	2L_3753356_SNP [dm3] 2L_3753356_SNP [dm6]	G	A	1.877e^-5	0.852	UTR_3_PRIME CG10019
3L	20571198	3L_20571198_SNP [dm3] 3L_20578098_SNP [dm6]	G	T	1.975e^-5	0.852	INTERGENIC
3L	4714688	3L_4714688_SNP [dm3] 3L_4714688_SNP [dm6]	C	G	2.004e^-5	0.852	INTRON RhoGEF64C
2L	4707969	2L_4707969_SNP [dm3] 2L_4707969_SNP [dm6]	G	T	2.083e^-5	0.852	INTRON CG34351
3L	4000540	3L_4000540_SNP [dm3] 3L_4000540_SNP [dm6]	G	T	2.154e^-5	0.852	INTERGENIC
X	18258435	X_18258435_SNP [dm3] X_18364402_SNP [dm6]	C	T	2.171e^-5	0.852	INTERGENIC
2R	3072957	2R_3072957_SNP [dm3] 2R_7185452_SNP [dm6]	C	T	2.174e^-5	0.852	DOWNSTREAM CG30384 INTRON pk	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13973622	2L_13973622_SNP [dm3] 2L_13973622_SNP [dm6]	C	T	2.182e^-5	0.852	UTR_3_PRIME NimC1 UPSTREAM He DOWNSTREAM NimC1
2L	4737812	2L_4737812_SNP [dm3] 2L_4737812_SNP [dm6]	A	G	2.224e^-5	0.852	INTRON CG15630	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	7095561	3R_7095561_SNP [dm3] 3R_11269839_SNP [dm6]	A	T	2.303e^-5	0.852	EXON CR31386	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17374961	X_17374961_INS [dm3] X_17480928_INS [dm6]	C	CGTAC	2.346e^-5	0.852	INTRON CG43658
3R	9060793	3R_9060793_SNP [dm3] 3R_13235071_SNP [dm6]	G	C	2.406e^-5	0.852	INTRON Ace
3R	7867826	3R_7867826_DEL [dm3] 3R_12042104_DEL [dm6]	TGTAA	T	2.467e^-5	0.852	SPLICE_SITE_REGION CG14736 INTRON CG14736
2L	7209688	2L_7209688_SNP [dm3] 2L_7209688_SNP [dm6]	T	C	2.513e^-5	0.852	INTRON CG13784
3R	7532971	3R_7532971_SNP [dm3] 3R_11707249_SNP [dm6]	G	A	2.583e^-5	0.852	INTERGENIC
2R	17897289	2R_17897289_SNP [dm3] 2R_22009784_SNP [dm6]	G	A	2.588e^-5	0.852	INTRON CG34370
3R	22684457	3R_22684457_SNP [dm3] 3R_26858735_SNP [dm6]	A	T	2.590e^-5	0.852	INTRON Lerp	TF binding site mE1_TFBS_chinmo
3L	1584381	3L_1584381_SNP [dm3] 3L_1584381_SNP [dm6]	G	A	2.709e^-5	0.852	INTRON CG13917
3L	11649612	3L_11649612_SNP [dm3] 3L_11656512_SNP [dm6]	C	T	2.709e^-5	0.852	UPSTREAM mir-274 INTRON CG32085
3L	2805475	3L_2805475_SNP [dm3] 3L_2805475_SNP [dm6]	C	T	2.719e^-5	0.852	INTRON CG43444
X	15008482	X_15008482_SNP [dm3] X_15114449_SNP [dm6]	T	G	2.879e^-5	0.852	DOWNSTREAM Rab3-GEF INTRON Cyp4s3
2L	11380032	2L_11380032_SNP [dm3] 2L_11380032_SNP [dm6]	T	G	2.887e^-5	0.852	INTERGENIC	regulatory region REDfly_CRMs
2R	17553599	2R_17553599_SNP [dm3] 2R_21666094_SNP [dm6]	A	G	2.889e^-5	0.852	SYNONYMOUS_CODING CG42364 UTR_3_PRIME CG42362 & 1 other UPSTREAM CG42365	TF binding site BDTNP1_TFBS_twi
3L	11236602	3L_11236602_SNP [dm3] 3L_11243502_SNP [dm6]	A	C	2.903e^-5	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	26169686	3R_26169686_SNP [dm3] 3R_30343964_SNP [dm6]	A	G	2.906e^-5	0.852	INTRON hdc	TF binding site BDTNP1_TFBS_dl
2L	20881515	2L_20881515_SNP [dm3] 2L_20881515_SNP [dm6]	G	A	2.921e^-5	0.852	INTRON sky & 1 other
2L	11380135	2L_11380135_INS [dm3] 2L_11380135_INS [dm6]	T	AAGC	2.955e^-5	0.852	INTERGENIC	regulatory region REDfly_CRMs
2L	11380075	2L_11380075_SNP [dm3] 2L_11380075_SNP [dm6]	G	A	3.016e^-5	0.852	INTERGENIC	regulatory region REDfly_CRMs
2L	5814084	2L_5814084_SNP [dm3] 2L_5814084_SNP [dm6]	C	T	3.055e^-5	0.852	INTERGENIC
2R	9774081	2R_9774081_SNP [dm3] 2R_13886576_SNP [dm6]	G	A	3.361e^-5	0.852	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad
2L	7087064	2L_7087064_SNP [dm3] 2L_7087064_SNP [dm6]	A	G	3.366e^-5	0.852	INTERGENIC
2R	2544075	2R_2544075_SNP [dm3] 2R_6656570_SNP [dm6]	T	C	3.415e^-5	0.852	START_GAINED geminin UTR_5_PRIME geminin UPSTREAM sced & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	4738141	2L_4738141_SNP [dm3] 2L_4738141_SNP [dm6]	G	A	3.460e^-5	0.852	INTRON CG15630	TF binding site mE1_TFBS_inv
2R	8366414	2R_8366414_SNP [dm3] 2R_12478909_SNP [dm6]	T	C	3.473e^-5	0.852	INTRON Dh44-R2
X	17964016	X_17964016_SNP [dm3] X_18069983_SNP [dm6]	T	C	3.491e^-5	0.852	SYNONYMOUS_CODING Dhc16F	TF binding site mE1_TFBS_chinmo
3L	2805669	3L_2805669_SNP [dm3] 3L_2805669_SNP [dm6]	C	T	3.493e^-5	0.852	INTRON CG43444
3R	16785590	3R_16785590_SNP [dm3] 3R_20959868_SNP [dm6]	A	G	3.557e^-5	0.852	INTRON Atpalpha
3L	5974012	3L_5974012_SNP [dm3] 3L_5980912_SNP [dm6]	G	A	3.600e^-5	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2R	9458858	2R_9458858_SNP [dm3] 2R_13571353_SNP [dm6]	T	C	3.765e^-5	0.852	UTR_3_PRIME CG42807 DOWNSTREAM CG42807	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_Stat92E
3R	25528919	3R_25528919_DEL [dm3] 3R_29703197_DEL [dm6]	GGGA	C	3.812e^-5	0.852	INTERGENIC
2L	2685316	2L_2685316_SNP [dm3] 2L_2685316_SNP [dm6]	A	C	3.843e^-5	0.852	INTRON CG31690
2R	3611393	2R_3611393_SNP [dm3] 2R_7723888_SNP [dm6]	T	A	3.937e^-5	0.852	INTRON CG18812	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	11379979	2L_11379979_SNP [dm3] 2L_11379979_SNP [dm6]	A	G	3.955e^-5	0.852	INTERGENIC	regulatory region REDfly_CRMs
2R	14579652	2R_14579652_SNP [dm3] 2R_18692147_SNP [dm6]	C	T	4.008e^-5	0.852	UTR_5_PRIME Sik3 INTRON Sik3
3R	23856487	3R_23856487_SNP [dm3] 3R_28030765_SNP [dm6]	C	T	4.037e^-5	0.852	SYNONYMOUS_CODING CG34362	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25528940	3R_25528940_DEL [dm3] 3R_29703218_DEL [dm6]	TTAGATTT	T	4.159e^-5	0.852	INTERGENIC
3R	22684478	3R_22684478_SNP [dm3] 3R_26858756_SNP [dm6]	A	T	4.170e^-5	0.852	INTRON Lerp	TF binding site mE1_TFBS_chinmo
2L	11371106	2L_11371106_SNP [dm3] 2L_11371106_SNP [dm6]	C	T	4.226e^-5	0.852	INTRON salr
X	12741149	X_12741149_SNP [dm3] X_12847116_SNP [dm6]	T	C	4.299e^-5	0.852	INTRON Pde9
2L	3165595	2L_3165595_SNP [dm3] 2L_3165595_SNP [dm6]	G	A	4.299e^-5	0.852	INTRON Hydr2	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	12741060	X_12741060_SNP [dm3] X_12847027_SNP [dm6]	A	T	4.305e^-5	0.852	INTRON Pde9
3R	7535917	3R_7535917_SNP [dm3] 3R_11710195_SNP [dm6]	C	T	4.323e^-5	0.852	INTERGENIC
X	18254515	X_18254515_SNP [dm3] X_18360482_SNP [dm6]	C	T	4.361e^-5	0.852	INTRON CG6106	TF binding site mE1_TFBS_chinmo
2L	2598730	2L_2598730_SNP [dm3] 2L_2598730_SNP [dm6]	A	G	4.470e^-5	0.852	EXON CR44790
3R	5144752	3R_5144752_SNP [dm3] 3R_9319030_SNP [dm6]	T	C	4.605e^-5	0.852	INTRON CG8861
2L	6841314	2L_6841314_SNP [dm3] 2L_6841314_SNP [dm6]	T	A	4.856e^-5	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2L	9855381	2L_9855381_SNP [dm3] 2L_9855381_SNP [dm6]	A	C	5.006e^-5	0.852	INTRON nAChRalpha6
3R	12784029	3R_12784029_SNP [dm3] 3R_16958307_SNP [dm6]	T	A	5.068e^-5	0.852	INTRON Abd-B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7087068	2L_7087068_SNP [dm3] 2L_7087068_SNP [dm6]	G	T	5.116e^-5	0.852	INTERGENIC
2L	17980099	2L_17980099_SNP [dm3] 2L_17980099_SNP [dm6]	A	T	5.158e^-5	0.852	SYNONYMOUS_CODING btv
3R	23856535	3R_23856535_SNP [dm3] 3R_28030813_SNP [dm6]	G	A	5.171e^-5	0.852	SYNONYMOUS_CODING CG34362	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19160930	2R_19160930_SNP [dm3] 2R_23273407_SNP [dm6]	C	T	5.421e^-5	0.852	NON_SYNONYMOUS_CODING ord
3L	3916871	3L_3916871_SNP [dm3] 3L_3916871_SNP [dm6]	A	G	5.422e^-5	0.852	INTRON Eip63F-1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	12570559	2L_12570559_SNP [dm3] 2L_12570559_SNP [dm6]	T	C	5.432e^-5	0.852	DOWNSTREAM CR44598 & 1 other INTERGENIC
X	9224592	X_9224592_SNP [dm3] X_9330559_SNP [dm6]	T	C	5.540e^-5	0.852	UPSTREAM CG34450 DOWNSTREAM CG34449 INTRON CG34449
2R	16109640	2R_16109640_SNP [dm3] 2R_20222135_SNP [dm6]	C	T	5.572e^-5	0.852	EXON CR45423
3L	5974017	3L_5974017_SNP [dm3] 3L_5980917_SNP [dm6]	T	G	5.603e^-5	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
X	22396342	X_22396342_SNP [dm3] X_22994506_SNP [dm6]	T	G	5.619e^-5	0.852	NON_SYNONYMOUS_CODING stnA UTR_5_PRIME stnB
3L	2616619	3L_2616619_SNP [dm3] 3L_2616619_SNP [dm6]	G	T	5.798e^-5	0.852	INTRON Pxn
3R	20439498	3R_20439498_SNP [dm3] 3R_24613776_SNP [dm6]	T	A	5.806e^-5	0.852	INTRON mld
2L	11380152	2L_11380152_SNP [dm3] 2L_11380152_SNP [dm6]	A	G	5.913e^-5	0.852	INTERGENIC	regulatory region REDfly_CRMs
2L	17979751	2L_17979751_SNP [dm3] 2L_17979751_SNP [dm6]	C	T	6.037e^-5	0.852	NON_SYNONYMOUS_CODING btv	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	10904707	X_10904707_SNP [dm3] X_11010674_SNP [dm6]	T	C	6.099e^-5	0.852	INTRON CG42339
2L	11341474	2L_11341474_SNP [dm3] 2L_11341474_SNP [dm6]	C	T	6.106e^-5	0.852	DOWNSTREAM CG14926 INTERGENIC
2R	1343241	2R_1343241_SNP [dm3] 2R_5455736_SNP [dm6]	T	C	6.231e^-5	0.852	UTR_3_PRIME laccase2
3R	10267727	3R_10267727_SNP [dm3] 3R_14442005_SNP [dm6]	G	A	6.284e^-5	0.852	INTRON cv-c
3R	17000224	3R_17000224_SNP [dm3] 3R_21174502_SNP [dm6]	T	C	6.320e^-5	0.852	SYNONYMOUS_CODING SNF4Agamma INTRON SNF4Agamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15833047	3R_15833047_SNP [dm3] 3R_20007325_SNP [dm6]	A	G	6.341e^-5	0.852	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	10082712	X_10082712_SNP [dm3] X_10188679_SNP [dm6]	A	G	6.349e^-5	0.852	NON_SYNONYMOUS_CODING CG43902 INTRON CR44894
2L	11380079	2L_11380079_SNP [dm3] 2L_11380079_SNP [dm6]	T	C	6.374e^-5	0.852	INTERGENIC	regulatory region REDfly_CRMs
2R	17636210	2R_17636210_SNP [dm3] 2R_21748705_SNP [dm6]	C	T	6.424e^-5	0.852	INTERGENIC
2R	17223207	2R_17223207_SNP [dm3] 2R_21335702_SNP [dm6]	A	T	6.440e^-5	0.852	SYNONYMOUS_CODING dom DOWNSTREAM snoRNA:Me28S-G2596 & 1 other INTRON dom	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10968250	2R_10968250_DEL [dm3] 2R_15080745_DEL [dm6]	AG	A	6.454e^-5	0.852	INTERGENIC	TF binding site mE1_TFBS_inv
X	6159683	X_6159683_SNP [dm3] X_6265650_SNP [dm6]	T	C	6.474e^-5	0.852	INTRON schlank	TF binding site BDTNP1_TFBS_twi
2L	13912431	2L_13912431_SNP [dm3] 2L_13912431_SNP [dm6]	G	A	6.500e^-5	0.852	SYNONYMOUS_CODING Acyp DOWNSTREAM Ance-2	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	15833028	3R_15833028_SNP [dm3] 3R_20007306_SNP [dm6]	T	C	6.509e^-5	0.852	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	17458394	3L_17458394_SNP [dm3] 3L_17465294_SNP [dm6]	A	G	6.569e^-5	0.852	UPSTREAM CG7603 INTERGENIC
2L	4738177	2L_4738177_SNP [dm3] 2L_4738177_SNP [dm6]	C	A	6.602e^-5	0.852	INTRON CG15630	TF binding site mE1_TFBS_inv
3R	10264788	3R_10264788_SNP [dm3] 3R_14439066_SNP [dm6]	C	A	6.724e^-5	0.852	INTRON cv-c
2L	2796220	2L_2796220_SNP [dm3] 2L_2796220_SNP [dm6]	C	T	6.819e^-5	0.852	UPSTREAM Syt1 INTRON Syt1
2L	10626187	2L_10626187_SNP [dm3] 2L_10626187_SNP [dm6]	T	C	6.872e^-5	0.852	INTRON Trim9
2R	2544607	2R_2544607_SNP [dm3] 2R_6657102_SNP [dm6]	T	A	6.928e^-5	0.852	UPSTREAM sced & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16867234	3L_16867234_INS [dm3] 3L_16874134_INS [dm6]	G	GCCACAACATATGAATTGTT...	6.938e^-5	0.852	INTRON Lmpt
2L	12570579	2L_12570579_SNP [dm3] 2L_12570579_SNP [dm6]	A	G	6.962e^-5	0.852	DOWNSTREAM CR44598 & 1 other INTERGENIC
3R	23055791	3R_23055791_SNP [dm3] 3R_27230069_SNP [dm6]	G	A	7.007e^-5	0.852	SYNONYMOUS_CODING CG31064 UPSTREAM CG42814 DOWNSTREAM CG31064	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	22396179	X_22396179_SNP [dm3] X_22994343_SNP [dm6]	G	T	7.087e^-5	0.852	INTRON stnA & 1 other
3L	8365383	3L_8365383_SNP [dm3] 3L_8372283_SNP [dm6]	C	T	7.184e^-5	0.852	UPSTREAM ImpE1 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10837021	X_10837021_SNP [dm3] X_10942988_SNP [dm6]	T	C	7.202e^-5	0.852	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo
2R	17107284	2R_17107284_SNP [dm3] 2R_21219779_SNP [dm6]	G	A	7.241e^-5	0.852	SYNONYMOUS_CODING ASPP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	8047861	3L_8047861_SNP [dm3] 3L_8054761_SNP [dm6]	G	A	7.361e^-5	0.852	SYNONYMOUS_CODING bip1 DOWNSTREAM nmo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17458704	3L_17458704_SNP [dm3] 3L_17465604_SNP [dm6]	G	A	7.379e^-5	0.852	UPSTREAM CG7603 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7344433	3R_7344433_SNP [dm3] 3R_11518711_SNP [dm6]	T	C	7.383e^-5	0.852	INTERGENIC
2L	17980009	2L_17980009_SNP [dm3] 2L_17980009_SNP [dm6]	G	A	7.530e^-5	0.852	SYNONYMOUS_CODING btv
3L	14859736	3L_14859736_SNP [dm3] 3L_14866636_SNP [dm6]	T	C	7.535e^-5	0.852	SYNONYMOUS_CODING CG17839
X	10621309	X_10621309_SNP [dm3] X_10727276_SNP [dm6]	A	T	7.544e^-5	0.852	INTRON CG32676
X	8810143	X_8810143_SNP [dm3] X_8916110_SNP [dm6]	T	C	7.698e^-5	0.852	INTRON rdgA
2L	16898528	2L_16898528_SNP [dm3] 2L_16898528_SNP [dm6]	C	T	7.782e^-5	0.852	SYNONYMOUS_CODING CG31805 UTR_3_PRIME CG31805 INTRON tweek
3R	25529847	3R_25529847_SNP [dm3] 3R_29704125_SNP [dm6]	T	C	7.803e^-5	0.852	INTERGENIC
3L	23881093	3L_23881093_SNP [dm3] 3L_23887993_SNP [dm6]	G	C	7.818e^-5	0.852	INTRON CG40470
2R	14651434	2R_14651434_SNP [dm3] 2R_18763929_SNP [dm6]	T	C	7.868e^-5	0.852	INTRON Mctp
X	13708767	X_13708767_SNP [dm3] X_13814734_SNP [dm6]	A	G	7.874e^-5	0.852	SYNONYMOUS_CODING Clic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	8365377	3L_8365377_SNP [dm3] 3L_8372277_SNP [dm6]	T	C	7.932e^-5	0.852	UPSTREAM ImpE1 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9135979	3R_9135979_SNP [dm3] 3R_13310257_SNP [dm6]	T	C	7.964e^-5	0.852	SYNONYMOUS_CODING CG32473
2R	9890887	2R_9890887_SNP [dm3] 2R_14003382_SNP [dm6]	A	G	7.987e^-5	0.852	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	9786635	X_9786635_SNP [dm3] X_9892602_SNP [dm6]	G	C	8.103e^-5	0.852	INTRON CG15249
2L	6841312	2L_6841312_SNP [dm3] 2L_6841312_SNP [dm6]	T	C	8.108e^-5	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3R	7867892	3R_7867892_SNP [dm3] 3R_12042170_SNP [dm6]	C	A	8.162e^-5	0.852	SYNONYMOUS_CODING CG14736
2R	8713614	2R_8713614_SNP [dm3] 2R_12826109_SNP [dm6]	C	T	8.182e^-5	0.852	INTERGENIC
3R	15833384	3R_15833384_SNP [dm3] 3R_20007662_SNP [dm6]	T	C	8.275e^-5	0.852	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	2579604	2L_2579604_SNP [dm3] 2L_2579604_SNP [dm6]	G	A	8.315e^-5	0.852	UPSTREAM Arpc5 DOWNSTREAM Elba2 INTRON CG3214	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	19407793	2R_19407793_SNP [dm3] 2R_23520270_SNP [dm6]	C	T	8.390e^-5	0.852	UTR_3_PRIME RabX1
2L	4371369	2L_4371369_SNP [dm3] 2L_4371369_SNP [dm6]	C	A	8.425e^-5	0.852	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
X	13502131	X_13502131_DEL [dm3] X_13608098_DEL [dm6]	TT	G	8.433e^-5	0.852	INTRON CG11178	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17223261	2R_17223261_SNP [dm3] 2R_21335756_SNP [dm6]	G	A	8.439e^-5	0.852	SYNONYMOUS_CODING dom DOWNSTREAM snoRNA:Me28S-G2596 & 1 other INTRON dom	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2579584	2L_2579584_SNP [dm3] 2L_2579584_SNP [dm6]	A	C	8.478e^-5	0.852	UPSTREAM Arpc5 DOWNSTREAM Elba2 INTRON CG3214	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	7078545	3L_7078545_SNP [dm3] 3L_7085445_SNP [dm6]	C	T	8.566e^-5	0.852	DOWNSTREAM Cpr65Ea INTERGENIC
X	7535074	X_7535074_INS [dm3] X_7641041_INS [dm6]	A	ACA	8.572e^-5	0.852	INTRON ct	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	9863718	3L_9863718_SNP [dm3] 3L_9870618_SNP [dm6]	C	T	8.656e^-5	0.852	UTR_3_PRIME CG8108	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	17430870	3R_17430870_DEL [dm3] 3R_21605148_DEL [dm6]	CA	C	8.690e^-5	0.852	INTRON InR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	12848963	2R_12848963_SNP [dm3] 2R_16961458_SNP [dm6]	T	C	8.798e^-5	0.852	INTERGENIC
2L	8625221	2L_8625221_SNP [dm3] 2L_8625221_SNP [dm6]	A	T	8.807e^-5	0.852	INTRON Sema-1a	TF binding site BDTNP1_TFBS_twi
3R	5079272	3R_5079272_SNP [dm3] 3R_9253550_SNP [dm6]	T	C	8.856e^-5	0.852	DOWNSTREAM St2 EXON CR16735
2L	5814166	2L_5814166_SNP [dm3] 2L_5814166_SNP [dm6]	C	A	8.860e^-5	0.852	INTERGENIC
3R	10836289	3R_10836289_SNP [dm3] 3R_15010567_SNP [dm6]	T	G	8.900e^-5	0.852	INTERGENIC
2R	17324521	2R_17324521_SNP [dm3] 2R_21437016_SNP [dm6]	A	T	8.970e^-5	0.852	INTRON Sdc
2L	3283035	2L_3283035_SNP [dm3] 2L_3283035_SNP [dm6]	G	A	8.990e^-5	0.852	INTERGENIC
3R	9125126	3R_9125126_SNP [dm3] 3R_13299404_SNP [dm6]	A	C	9.056e^-5	0.852	SYNONYMOUS_CODING CG8774	TF binding site mE1_TFBS_HSA
3R	8514741	3R_8514741_SNP [dm3] 3R_12689019_SNP [dm6]	A	G	9.118e^-5	0.852	DOWNSTREAM Su_fu_ INTRON kar	TF binding site mE1_TFBS_chinmo
3R	10261815	3R_10261815_SNP [dm3] 3R_14436093_SNP [dm6]	C	T	9.167e^-5	0.852	INTRON cv-c
X	14457120	X_14457120_SNP [dm3] X_14563087_SNP [dm6]	T	C	9.208e^-5	0.852	INTERGENIC
2R	10867805	2R_10867805_SNP [dm3] 2R_14980300_SNP [dm6]	C	T	9.225e^-5	0.852	UTR_3_PRIME ckn UPSTREAM pcs
3R	7045037	3R_7045037_SNP [dm3] 3R_11219315_SNP [dm6]	A	G	9.319e^-5	0.852	DOWNSTREAM CG6693 INTRON CG6689	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	4000541	3L_4000541_SNP [dm3] 3L_4000541_SNP [dm6]	C	G	9.566e^-5	0.852	INTERGENIC
2R	17763647	2R_17763647_SNP [dm3] 2R_21876142_SNP [dm6]	C	T	9.583e^-5	0.852	INTRON Fili
3R	16785589	3R_16785589_SNP [dm3] 3R_20959867_SNP [dm6]	A	G	9.604e^-5	0.852	INTRON Atpalpha
2L	4371246	2L_4371246_SNP [dm3] 2L_4371246_SNP [dm6]	T	G	9.636e^-5	0.852	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3R	6931654	3R_6931654_INS [dm3] 3R_11105932_INS [dm6]	T	TTAACCATATTT...	9.690e^-5	0.852	INTERGENIC
3L	23118179	3L_23118179_SNP [dm3] 3L_23125079_SNP [dm6]	A	T	9.719e^-5	0.852	UPSTREAM CG33217 INTERGENIC	transposable element FlyBase
3L	7983643	3L_7983643_SNP [dm3] 3L_7990543_SNP [dm6]	G	T	9.727e^-5	0.852	INTRON nmo
2L	11380055	2L_11380055_SNP [dm3] 2L_11380055_SNP [dm6]	T	C	9.759e^-5	0.852	INTERGENIC	regulatory region REDfly_CRMs
3L	697338	3L_697338_SNP [dm3] 3L_697338_SNP [dm6]	C	T	9.791e^-5	0.852	INTRON CG13894	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	7047759	3R_7047759_SNP [dm3] 3R_11222037_SNP [dm6]	A	T	9.880e^-5	0.852	UPSTREAM snoRNA:Me18S-C1096 & 2 others DOWNSTREAM CR31144 INTRON RpL3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	16558480	2L_16558480_SNP [dm3] 2L_16558480_SNP [dm6]	C	G	9.911e^-5	0.852	NON_SYNONYMOUS_CODING CG42389	TF binding site mE1_TFBS_cad
3R	8441900	3R_8441900_SNP [dm3] 3R_12616178_SNP [dm6]	G	A	9.983e^-5	0.852	INTERGENIC
3R	5114045	3R_5114045_SNP [dm3] 3R_9288323_SNP [dm6]	A	T	9.984e^-5	0.852	INTERGENIC
3R	10267752	3R_10267752_SNP [dm3] 3R_14442030_SNP [dm6]	A	T	9.993e^-5	0.852	INTRON cv-c
2L	10609185	2L_10609185_SNP [dm3] 2L_10609185_SNP [dm6]	G	A	1.002e^-4	0.852	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3L	9376734	3L_9376734_SNP [dm3] 3L_9383634_SNP [dm6]	G	A	1.004e^-4	0.852	UPSTREAM Hsp27 DOWNSTREAM Hsp23 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	16910236	3L_16910236_SNP [dm3] 3L_16917136_SNP [dm6]	G	A	1.010e^-4	0.852	INTRON Lmpt	TF binding site BDTNP1_TFBS_z
3L	7487992	3L_7487992_SNP [dm3] 3L_7494892_SNP [dm6]	T	G	1.010e^-4	0.852	SYNONYMOUS_CODING Cyp4d8	TF binding site mE1_TFBS_cad
2L	8558451	2L_8558451_SNP [dm3] 2L_8558451_SNP [dm6]	G	A	1.012e^-4	0.852	INTRON Sema-1a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19890752	2R_19890752_SNP [dm3] 2R_24003229_SNP [dm6]	G	C	1.014e^-4	0.852	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26107811	3R_26107811_SNP [dm3] 3R_30282089_SNP [dm6]	T	G	1.015e^-4	0.852	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	15833647	3R_15833647_SNP [dm3] 3R_20007925_SNP [dm6]	T	G	1.020e^-4	0.852	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	2549352	2L_2549352_SNP [dm3] 2L_2549352_SNP [dm6]	T	C	1.020e^-4	0.852	INTERGENIC
2R	17338567	2R_17338567_SNP [dm3] 2R_21451062_SNP [dm6]	T	C	1.024e^-4	0.852	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2685255	2L_2685255_SNP [dm3] 2L_2685255_SNP [dm6]	T	C	1.025e^-4	0.852	INTRON CG31690
3L	23117908	3L_23117908_SNP [dm3] 3L_23124808_SNP [dm6]	G	A	1.029e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_cad
X	4730324	X_4730324_SNP [dm3] X_4836291_SNP [dm6]	G	A	1.037e^-4	0.852	INTERGENIC
X	12869807	X_12869807_SNP [dm3] X_12975774_SNP [dm6]	T	A	1.042e^-4	0.852	INTRON CG12716	TF binding site mE1_TFBS_inv
X	20381551	X_20381551_SNP [dm3] X_20510524_SNP [dm6]	T	G	1.050e^-4	0.852	UTR_5_PRIME RhoGAP19D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA
2R	14581212	2R_14581212_SNP [dm3] 2R_18693707_SNP [dm6]	T	G	1.051e^-4	0.852	INTRON Sik3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	17274105	2R_17274105_SNP [dm3] 2R_21386600_SNP [dm6]	G	T	1.051e^-4	0.852	UTR_5_PRIME Acox57D-p UPSTREAM Acox57D-p & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	5529251	2L_5529251_SNP [dm3] 2L_5529251_SNP [dm6]	G	A	1.053e^-4	0.852	NON_SYNONYMOUS_CODING CG31915 INTRON Cap-D3	TF binding site mE1_TFBS_sens
2L	6127663	2L_6127663_SNP [dm3] 2L_6127663_SNP [dm6]	T	G	1.054e^-4	0.852	NON_SYNONYMOUS_CODING WDR79 UPSTREAM WDR79 DOWNSTREAM CG42730 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8140296	3R_8140296_SNP [dm3] 3R_12314574_SNP [dm6]	G	T	1.058e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23856556	3R_23856556_SNP [dm3] 3R_28030834_SNP [dm6]	G	A	1.059e^-4	0.852	SYNONYMOUS_CODING CG34362	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15456417	2L_15456417_SNP [dm3] 2L_15456417_SNP [dm6]	C	T	1.069e^-4	0.852	INTERGENIC
2L	7264572	2L_7264572_SNP [dm3] 2L_7264572_SNP [dm6]	T	C	1.074e^-4	0.852	INTRON Wnt4	TF binding site mE1_TFBS_HSA
3L	23073777	3L_23073777_SNP [dm3] 3L_23080677_SNP [dm6]	G	A	1.075e^-4	0.852	INTERGENIC	transposable element FlyBase
2R	14574371	2R_14574371_SNP [dm3] 2R_18686866_SNP [dm6]	C	T	1.076e^-4	0.852	UPSTREAM CG42855 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8706921	3L_8706921_SNP [dm3] 3L_8713821_SNP [dm6]	T	C	1.076e^-4	0.852	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18062465	2L_18062465_SNP [dm3] 2L_18062465_SNP [dm6]	G	A	1.078e^-4	0.852	SYNONYMOUS_CODING rdo
2L	7087010	2L_7087010_SNP [dm3] 2L_7087010_SNP [dm6]	A	C	1.081e^-4	0.852	INTERGENIC
X	10839262	X_10839262_SNP [dm3] X_10945229_SNP [dm6]	A	G	1.083e^-4	0.852	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo
2R	19160982	2R_19160982_SNP [dm3] 2R_23273459_SNP [dm6]	A	G	1.086e^-4	0.852	SYNONYMOUS_CODING ord
X	7535070	X_7535070_SNP [dm3] X_7641037_SNP [dm6]	G	A	1.089e^-4	0.852	INTRON ct	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	10628293	X_10628293_SNP [dm3] X_10734260_SNP [dm6]	G	C	1.091e^-4	0.852	INTRON CG32676
2L	5904799	2L_5904799_INS [dm3] 2L_5904799_INS [dm6]	A	AA	1.092e^-4	0.852	UPSTREAM CG9021 DOWNSTREAM CR43808 INTERGENIC
2R	17067921	2R_17067921_SNP [dm3] 2R_21180416_SNP [dm6]	G	A	1.103e^-4	0.852	UPSTREAM tRNA:CR33539 INTRON Pu	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5709040	X_5709040_DEL [dm3] X_5815007_DEL [dm6]	CT	C	1.109e^-4	0.852	UTR_3_PRIME CG15766
2L	7086558	2L_7086558_SNP [dm3] 2L_7086558_SNP [dm6]	T	C	1.112e^-4	0.852	INTERGENIC
3R	16764410	3R_16764410_SNP [dm3] 3R_20938688_SNP [dm6]	T	A	1.114e^-4	0.852	INTRON CG31191
X	15180798	X_15180798_SNP [dm3] X_15286765_SNP [dm6]	G	C	1.114e^-4	0.852	INTERGENIC
X	17301918	X_17301918_SNP [dm3] X_17407885_SNP [dm6]	C	T	1.128e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10836219	3R_10836219_SNP [dm3] 3R_15010497_SNP [dm6]	A	G	1.132e^-4	0.852	INTERGENIC
3R	9378880	3R_9378880_SNP [dm3] 3R_13553158_SNP [dm6]	A	G	1.140e^-4	0.852	INTERGENIC
3R	4307553	3R_4307553_SNP [dm3] 3R_8481831_SNP [dm6]	C	A	1.143e^-4	0.852	INTERGENIC
X	18214212	X_18214212_SNP [dm3] X_18320179_SNP [dm6]	A	G	1.150e^-4	0.852	INTRON CG6023
2R	16062112	2R_16062112_SNP [dm3] 2R_20174607_SNP [dm6]	C	T	1.163e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	8549161	3R_8549161_SNP [dm3] 3R_12723439_SNP [dm6]	G	T	1.168e^-4	0.852	UPSTREAM Men INTERGENIC
3R	7049789	3R_7049789_SNP [dm3] 3R_11224067_SNP [dm6]	C	A	1.169e^-4	0.852	SYNONYMOUS_CODING RpL3 UTR_3_PRIME RpL3 UPSTREAM snoRNA:Me28S-G2017 DOWNSTREAM snoRNA:Psi28S-291	TF binding site mE1_TFBS_sens
2L	17976994	2L_17976994_SNP [dm3] 2L_17976994_SNP [dm6]	T	G	1.176e^-4	0.852	NON_SYNONYMOUS_CODING btv
3L	468608	3L_468608_SNP [dm3] 3L_468608_SNP [dm6]	G	C	1.184e^-4	0.852	INTRON klar
2L	4371373	2L_4371373_SNP [dm3] 2L_4371373_SNP [dm6]	A	T	1.185e^-4	0.852	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2R	19846412	2R_19846412_SNP [dm3] 2R_23958889_SNP [dm6]	G	A	1.193e^-4	0.852	SYNONYMOUS_CODING alpha-catenin-related	TF binding site mE1_TFBS_chinmo
2R	9767517	2R_9767517_SNP [dm3] 2R_13880012_SNP [dm6]	A	G	1.205e^-4	0.852	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad
2L	4371727	2L_4371727_SNP [dm3] 2L_4371727_SNP [dm6]	G	T	1.211e^-4	0.852	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3L	1469020	3L_1469020_SNP [dm3] 3L_1469020_SNP [dm6]	G	C	1.211e^-4	0.852	DOWNSTREAM rho INTRON Ptp61F
2R	9532558	2R_9532558_SNP [dm3] 2R_13645053_SNP [dm6]	G	A	1.214e^-4	0.852	INTRON fas
2L	3889669	2L_3889669_SNP [dm3] 2L_3889669_SNP [dm6]	C	T	1.214e^-4	0.852	SYNONYMOUS_CODING capu UTR_5_PRIME capu UPSTREAM capu INTRON capu	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_kn mE1_TFBS_ttk
3R	9067966	3R_9067966_SNP [dm3] 3R_13242244_SNP [dm6]	C	T	1.216e^-4	0.852	INTRON Ace
X	5708950	X_5708950_SNP [dm3] X_5814917_SNP [dm6]	A	C	1.218e^-4	0.852	UTR_3_PRIME CG15766
2L	4371256	2L_4371256_SNP [dm3] 2L_4371256_SNP [dm6]	T	G	1.234e^-4	0.852	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2R	12940182	2R_12940182_SNP [dm3] 2R_17052677_SNP [dm6]	T	C	1.241e^-4	0.852	NON_SYNONYMOUS_CODING CG9646 INTRON CG9646	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	7033789	3R_7033789_SNP [dm3] 3R_11208067_SNP [dm6]	G	T	1.242e^-4	0.852	NON_SYNONYMOUS_CODING cu DOWNSTREAM SdhC
3L	23881066	3L_23881066_SNP [dm3] 3L_23887966_SNP [dm6]	A	T	1.243e^-4	0.852	INTRON CG40470
3R	9102027	3R_9102027_SNP [dm3] 3R_13276305_SNP [dm6]	C	G	1.244e^-4	0.852	INTERGENIC
3R	4472957	3R_4472957_SNP [dm3] 3R_8647235_SNP [dm6]	G	T	1.249e^-4	0.852	UTR_3_PRIME Mkk4 DOWNSTREAM Mkk4
2L	11380355	2L_11380355_SNP [dm3] 2L_11380355_SNP [dm6]	T	A	1.251e^-4	0.852	INTERGENIC	regulatory region REDfly_CRMs
X	17301959	X_17301959_SNP [dm3] X_17407926_SNP [dm6]	T	A	1.264e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	20882482	2L_20882482_SNP [dm3] 2L_20882482_SNP [dm6]	A	G	1.267e^-4	0.852	INTRON sky & 1 other
X	5708702	X_5708702_DEL [dm3] X_5814669_DEL [dm6]	TC	T	1.268e^-4	0.852	DOWNSTREAM CG15766 INTERGENIC
2R	14581204	2R_14581204_SNP [dm3] 2R_18693699_SNP [dm6]	C	T	1.276e^-4	0.852	INTRON Sik3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	11379587	2L_11379587_SNP [dm3] 2L_11379587_SNP [dm6]	G	T	1.284e^-4	0.852	INTERGENIC	regulatory region REDfly_CRMs
2R	19241582	2R_19241582_SNP [dm3] 2R_23354059_SNP [dm6]	G	A	1.285e^-4	0.852	UPSTREAM CG30409 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17723768	2R_17723768_SNP [dm3] 2R_21836263_SNP [dm6]	T	A	1.292e^-4	0.852	SYNONYMOUS_CODING CG4377
2L	4588629	2L_4588629_INS [dm3] 2L_4588629_INS [dm6]	T	TT	1.294e^-4	0.852	INTRON dp	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	16060948	2R_16060948_SNP [dm3] 2R_20173443_SNP [dm6]	T	C	1.298e^-4	0.852	INTERGENIC
3R	25732368	3R_25732368_SNP [dm3] 3R_29906646_SNP [dm6]	C	A	1.302e^-4	0.852	DOWNSTREAM CG15515 INTERGENIC
2L	13139091	2L_13139091_SNP [dm3] 2L_13139091_SNP [dm6]	C	G	1.302e^-4	0.852	INTERGENIC
3L	8811778	3L_8811778_SNP [dm3] 3L_8818678_SNP [dm6]	G	T	1.306e^-4	0.852	INTERGENIC
3L	23117909	3L_23117909_SNP [dm3] 3L_23124809_SNP [dm6]	C	G	1.313e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_cad
3R	20970805	3R_20970805_SNP [dm3] 3R_25145083_SNP [dm6]	A	G	1.328e^-4	0.852	INTERGENIC
3L	8878927	3L_8878927_SNP [dm3] 3L_8885827_SNP [dm6]	A	G	1.329e^-4	0.852	INTRON dally
3L	19184721	3L_19184721_SNP [dm3] 3L_19191621_SNP [dm6]	T	G	1.331e^-4	0.852	INTRON fz2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19241579	2R_19241579_INS [dm3] 2R_23354056_INS [dm6]	T	TGT	1.335e^-4	0.852	UPSTREAM CG30409 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	5974011	3L_5974011_SNP [dm3] 3L_5980911_SNP [dm6]	T	C	1.348e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3R	10264752	3R_10264752_SNP [dm3] 3R_14439030_SNP [dm6]	A	C	1.352e^-4	0.852	INTRON cv-c
3R	1037417	3R_1037417_SNP [dm3] 3R_5211695_SNP [dm6]	G	A	1.353e^-4	0.852	INTRON cno	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_sens
3R	7049978	3R_7049978_SNP [dm3] 3R_11224256_SNP [dm6]	C	T	1.355e^-4	0.852	UPSTREAM snoRNA:Me28S-G2017 DOWNSTREAM snoRNA:Psi28S-291 INTRON RpL3	TF binding site mE1_TFBS_sens
2L	4355538	2L_4355538_SNP [dm3] 2L_4355538_SNP [dm6]	A	C	1.367e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	23094263	3L_23094263_SNP [dm3] 3L_23101163_SNP [dm6]	A	C	1.373e^-4	0.852	INTRON CkIIalpha
3L	2325572	3L_2325572_SNP [dm3] 3L_2325572_SNP [dm6]	G	A	1.384e^-4	0.852	INTRON MsR1
3L	8580080	3L_8580080_INS [dm3] 3L_8586980_INS [dm6]	T	TATTATTT	1.388e^-4	0.852	INTRON CG43078	TF binding site mE1_TFBS_chinmo
3R	7048709	3R_7048709_DEL [dm3] 3R_11222987_DEL [dm6]	AA	A	1.389e^-4	0.852	UTR_3_PRIME RpL3 UPSTREAM snoRNA:Psi28S-291 DOWNSTREAM snoRNA:Me18S-C1096 & 1 other INTRON RpL3 EXON CR31144	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	7867839	3R_7867839_SNP [dm3] 3R_12042117_SNP [dm6]	T	C	1.389e^-4	0.852	INTRON CG14736
2R	2571388	2R_2571388_SNP [dm3] 2R_6683883_SNP [dm6]	T	C	1.398e^-4	0.852	SYNONYMOUS_CODING CG15909 UPSTREAM CR44165 DOWNSTREAM Tdc2 INTRON CG9422	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_HSA
3R	5097271	3R_5097271_SNP [dm3] 3R_9271549_SNP [dm6]	T	C	1.401e^-4	0.852	INTERGENIC
2L	8555233	2L_8555233_SNP [dm3] 2L_8555233_SNP [dm6]	A	C	1.405e^-4	0.852	INTRON Sema-1a
3L	3003871	3L_3003871_DEL [dm3] 3L_3003871_DEL [dm6]	TT	T	1.408e^-4	0.852	INTRON FMRFaR
3L	8808942	3L_8808942_INS [dm3] 3L_8815842_INS [dm6]	T	TT	1.413e^-4	0.852	INTERGENIC
2R	16062091	2R_16062091_SNP [dm3] 2R_20174586_SNP [dm6]	A	G	1.415e^-4	0.852	INTERGENIC
3L	17458713	3L_17458713_SNP [dm3] 3L_17465613_SNP [dm6]	A	G	1.416e^-4	0.852	UPSTREAM CG7603 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2094283	2L_2094283_SNP [dm3] 2L_2094283_SNP [dm6]	T	A	1.421e^-4	0.852	INTRON dpr3	TF binding site BDTNP1_TFBS_twi
2R	19007559	2R_19007559_SNP [dm3] 2R_23120036_SNP [dm6]	A	T	1.427e^-4	0.852	INTERGENIC
3R	5121354	3R_5121354_SNP [dm3] 3R_9295632_SNP [dm6]	A	C	1.434e^-4	0.852	INTRON CG8861
3L	23118313	3L_23118313_SNP [dm3] 3L_23125213_SNP [dm6]	T	C	1.438e^-4	0.852	UPSTREAM CG33217 INTERGENIC	transposable element FlyBase
3R	7867846	3R_7867846_SNP [dm3] 3R_12042124_SNP [dm6]	T	C	1.448e^-4	0.852	INTRON CG14736
3L	10048720	3L_10048720_SNP [dm3] 3L_10055620_SNP [dm6]	T	A	1.453e^-4	0.852	INTRON dpr6
2R	17425896	2R_17425896_SNP [dm3] 2R_21538391_SNP [dm6]	T	G	1.454e^-4	0.852	SYNONYMOUS_CODING CG33226 UPSTREAM CG30287 INTRON Egfr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20786830	3L_20786830_SNP [dm3] 3L_20793730_SNP [dm6]	G	A	1.458e^-4	0.852	UPSTREAM Six4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	7920517	3R_7920517_SNP [dm3] 3R_12094795_SNP [dm6]	G	A	1.462e^-4	0.852	UPSTREAM dpr17 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10726183	3R_10726183_SNP [dm3] 3R_14900461_SNP [dm6]	T	G	1.475e^-4	0.852	UTR_3_PRIME RpS5b UPSTREAM VhaPPA1-2 DOWNSTREAM CG3817	TF binding site mE1_TFBS_chinmo
X	22395898	X_22395898_SNP [dm3] X_22994062_SNP [dm6]	A	G	1.476e^-4	0.852	INTRON stnA & 1 other
X	7535069	X_7535069_SNP [dm3] X_7641036_SNP [dm6]	G	T	1.478e^-4	0.852	INTRON ct	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	24786522	3R_24786522_SNP [dm3] 3R_28960800_SNP [dm6]	G	A	1.483e^-4	0.852	INTRON CG14521
2L	2736548	2L_2736548_SNP [dm3] 2L_2736548_SNP [dm6]	A	G	1.492e^-4	0.852	INTRON CG31689
X	19876316	X_19876316_SNP [dm3] X_19982283_SNP [dm6]	C	G	1.497e^-4	0.852	INTERGENIC
2R	17636228	2R_17636228_SNP [dm3] 2R_21748723_SNP [dm6]	T	A	1.504e^-4	0.852	INTERGENIC
2L	2736549	2L_2736549_SNP [dm3] 2L_2736549_SNP [dm6]	G	T	1.506e^-4	0.852	INTRON CG31689
2L	4077502	2L_4077502_SNP [dm3] 2L_4077502_SNP [dm6]	G	T	1.507e^-4	0.852	INTRON ed
3L	17458707	3L_17458707_SNP [dm3] 3L_17465607_SNP [dm6]	C	A	1.511e^-4	0.852	UPSTREAM CG7603 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12698960	3L_12698960_SNP [dm3] 3L_12705860_SNP [dm6]	C	T	1.512e^-4	0.852	INTRON mirr	TF binding site BDTNP1_TFBS_da
2L	3486009	2L_3486009_SNP [dm3] 2L_3486009_SNP [dm6]	T	C	1.514e^-4	0.852	INTRON CG15414
2R	2544002	2R_2544002_SNP [dm3] 2R_6656497_SNP [dm6]	A	T	1.517e^-4	0.852	UPSTREAM sced & 1 other INTRON geminin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	23856568	3R_23856568_SNP [dm3] 3R_28030846_SNP [dm6]	T	G	1.518e^-4	0.852	NON_SYNONYMOUS_CODING CG34362	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17324522	2R_17324522_SNP [dm3] 2R_21437017_SNP [dm6]	C	T	1.520e^-4	0.852	INTRON Sdc
X	19055737	X_19055737_SNP [dm3] X_19161704_SNP [dm6]	C	T	1.522e^-4	0.852	INTRON RhoGAP18B	TF binding site mE1_TFBS_inv
3R	15833054	3R_15833054_SNP [dm3] 3R_20007332_SNP [dm6]	G	T	1.525e^-4	0.852	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	5080333	3R_5080333_SNP [dm3] 3R_9254611_SNP [dm6]	A	T	1.526e^-4	0.852	UPSTREAM CG16734 EXON CR16735	TF binding site mE1_TFBS_inv
2L	15444466	2L_15444466_SNP [dm3] 2L_15444466_SNP [dm6]	A	G	1.529e^-4	0.852	INTERGENIC
X	19060695	X_19060695_INS [dm3] X_19166662_INS [dm6]	A	AG	1.530e^-4	0.852	INTRON RhoGAP18B
2R	11520751	2R_11520751_SNP [dm3] 2R_15633246_SNP [dm6]	A	T	1.531e^-4	0.852	INTRON CG42524
2L	6127316	2L_6127316_SNP [dm3] 2L_6127316_SNP [dm6]	C	G	1.538e^-4	0.852	NON_SYNONYMOUS_CODING WDR79 DOWNSTREAM CG42730 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	17192832	2R_17192832_SNP [dm3] 2R_21305327_SNP [dm6]	C	T	1.542e^-4	0.852	SYNONYMOUS_CODING CG42672	TF binding site mE1_TFBS_cad
2R	1373350	2R_1373350_SNP [dm3] 2R_5485845_SNP [dm6]	T	C	1.546e^-4	0.852	INTRON CG30440
2R	17272610	2R_17272610_SNP [dm3] 2R_21385105_SNP [dm6]	A	G	1.549e^-4	0.852	SYNONYMOUS_CODING EfSec UPSTREAM CG10795	TF binding site mE1_TFBS_sens
3L	10649235	3L_10649235_DEL [dm3] 3L_10656135_DEL [dm6]	TT	T	1.552e^-4	0.852	INTRON CG32066	TF binding site BDTNP1_TFBS_twi
2R	17637264	2R_17637264_SNP [dm3] 2R_21749759_SNP [dm6]	G	T	1.560e^-4	0.852	INTERGENIC
2R	17872253	2R_17872253_SNP [dm3] 2R_21984748_SNP [dm6]	C	A	1.561e^-4	0.852	DOWNSTREAM CG30401 INTERGENIC
2R	12848119	2R_12848119_SNP [dm3] 2R_16960614_SNP [dm6]	C	G	1.565e^-4	0.852	UPSTREAM CG9010 INTERGENIC
3R	7048740	3R_7048740_SNP [dm3] 3R_11223018_SNP [dm6]	G	A	1.565e^-4	0.852	UTR_3_PRIME RpL3 UPSTREAM snoRNA:Psi28S-291 DOWNSTREAM snoRNA:Me18S-C1096 & 1 other INTRON RpL3 EXON CR31144	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	7088448	3R_7088448_SNP [dm3] 3R_11262726_SNP [dm6]	A	T	1.565e^-4	0.852	INTERGENIC
3R	12783027	3R_12783027_SNP [dm3] 3R_16957305_SNP [dm6]	T	A	1.585e^-4	0.852	INTRON Abd-B	TF binding site mE1_TFBS_bab1
X	8369800	X_8369800_SNP [dm3] X_8475767_SNP [dm6]	A	G	1.590e^-4	0.852	UTR_3_PRIME Cp7Fb INTRON CG33223
3R	9136003	3R_9136003_SNP [dm3] 3R_13310281_SNP [dm6]	C	T	1.593e^-4	0.852	SYNONYMOUS_CODING CG32473
2R	19160890	2R_19160890_SNP [dm3] 2R_23273367_SNP [dm6]	C	T	1.594e^-4	0.852	NON_SYNONYMOUS_CODING ord
2L	4371304	2L_4371304_SNP [dm3] 2L_4371304_SNP [dm6]	C	G	1.600e^-4	0.852	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3R	7166194	3R_7166194_SNP [dm3] 3R_11340472_SNP [dm6]	A	G	1.602e^-4	0.852	INTRON pros	TF binding site BDTNP1_TFBS_dl
2R	14651494	2R_14651494_SNP [dm3] 2R_18763989_SNP [dm6]	T	C	1.608e^-4	0.852	INTRON Mctp
2R	6679800	2R_6679800_SNP [dm3] 2R_10792295_SNP [dm6]	T	G	1.614e^-4	0.852	INTRON CG33144 & 1 other
2L	5863063	2L_5863063_SNP [dm3] 2L_5863063_SNP [dm6]	A	C	1.621e^-4	0.852	INTRON rau
X	15008480	X_15008480_SNP [dm3] X_15114447_SNP [dm6]	A	T	1.623e^-4	0.852	DOWNSTREAM Rab3-GEF INTRON Cyp4s3
3L	7548154	3L_7548154_SNP [dm3] 3L_7555054_SNP [dm6]	C	T	1.628e^-4	0.852	DOWNSTREAM CG14837 INTERGENIC
3L	697359	3L_697359_SNP [dm3] 3L_697359_SNP [dm6]	A	T	1.633e^-4	0.852	INTRON CG13894	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	6670435	3R_6670435_SNP [dm3] 3R_10844713_SNP [dm6]	G	C	1.637e^-4	0.852	INTRON Cad86C
2R	18505714	2R_18505714_SNP [dm3] 2R_22618209_SNP [dm6]	T	G	1.639e^-4	0.852	INTRON CG33143
3R	10256691	3R_10256691_SNP [dm3] 3R_14430969_SNP [dm6]	G	T	1.641e^-4	0.852	INTRON cv-c
X	19666983	X_19666983_SNP [dm3] X_19772950_SNP [dm6]	T	A	1.642e^-4	0.852	INTRON vfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19144494	3R_19144494_SNP [dm3] 3R_23318772_SNP [dm6]	C	T	1.649e^-4	0.852	INTRON pnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9134586	3R_9134586_SNP [dm3] 3R_13308864_SNP [dm6]	C	T	1.650e^-4	0.852	SYNONYMOUS_CODING CG32473 UPSTREAM CG32473 INTRON CG32473
3R	7473821	3R_7473821_SNP [dm3] 3R_11648099_SNP [dm6]	G	A	1.665e^-4	0.852	INTRON Csk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	14687656	3R_14687656_SNP [dm3] 3R_18861934_SNP [dm6]	A	T	1.671e^-4	0.852	INTERGENIC
X	14628581	X_14628581_SNP [dm3] X_14734548_SNP [dm6]	T	C	1.671e^-4	0.852	INTRON NetB
2L	2736573	2L_2736573_SNP [dm3] 2L_2736573_SNP [dm6]	C	G	1.672e^-4	0.852	UPSTREAM mir-4914 INTRON CG31689
2L	5240754	2L_5240754_SNP [dm3] 2L_5240754_SNP [dm6]	T	C	1.675e^-4	0.852	UPSTREAM tRNA:CR31971 DOWNSTREAM tRNA:CR31914 INTRON tkv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
X	6159732	X_6159732_SNP [dm3] X_6265699_SNP [dm6]	G	T	1.676e^-4	0.852	INTRON schlank	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	18381924	X_18381924_SNP [dm3] X_18487891_SNP [dm6]	G	A	1.676e^-4	0.852	SYNONYMOUS_CODING CG15046 UPSTREAM psh	TF binding site mE1_TFBS_chinmo
3L	11649747	3L_11649747_SNP [dm3] 3L_11656647_SNP [dm6]	C	T	1.683e^-4	0.852	UPSTREAM mir-274 INTRON CG32085
2L	2738390	2L_2738390_SNP [dm3] 2L_2738390_SNP [dm6]	G	A	1.687e^-4	0.852	SPLICE_SITE_REGION CG31689 DOWNSTREAM mir-4914 INTRON CG31689	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22108417	3R_22108417_SNP [dm3] 3R_26282695_SNP [dm6]	C	G	1.689e^-4	0.852	INTERGENIC
2L	7065840	2L_7065840_SNP [dm3] 2L_7065840_SNP [dm6]	A	G	1.697e^-4	0.852	UPSTREAM Nuf2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	16887697	3L_16887697_SNP [dm3] 3L_16894597_SNP [dm6]	G	A	1.702e^-4	0.852	INTRON Lmpt
2L	10560877	2L_10560877_SNP [dm3] 2L_10560877_SNP [dm6]	A	G	1.704e^-4	0.852	INTRON Trim9
2L	7144665	2L_7144665_SNP [dm3] 2L_7144665_SNP [dm6]	A	G	1.713e^-4	0.852	INTRON Pvf3 EXON CR44612	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22105750	3R_22105750_SNP [dm3] 3R_26280028_SNP [dm6]	A	C	1.720e^-4	0.852	INTERGENIC
2R	18682670	2R_18682670_SNP [dm3] 2R_22795165_SNP [dm6]	C	A	1.726e^-4	0.852	INTRON CG42260
2L	973537	2L_973537_SNP [dm3] 2L_973537_SNP [dm6]	C	T	1.730e^-4	0.852	INTERGENIC
3L	11236588	3L_11236588_SNP [dm3] 3L_11243488_SNP [dm6]	C	T	1.735e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	18572083	X_18572083_SNP [dm3] X_18678050_SNP [dm6]	G	A	1.737e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	10836220	3R_10836220_SNP [dm3] 3R_15010498_SNP [dm6]	G	A	1.737e^-4	0.852	INTERGENIC
3R	24051552	3R_24051552_SNP [dm3] 3R_28225830_SNP [dm6]	A	T	1.738e^-4	0.852	INTRON CG34354	TF binding site mE1_TFBS_HSA
3R	24217558	3R_24217558_SNP [dm3] 3R_28391836_SNP [dm6]	A	T	1.741e^-4	0.852	INTERGENIC
3R	7047609	3R_7047609_SNP [dm3] 3R_11221887_SNP [dm6]	G	A	1.745e^-4	0.852	UPSTREAM RpL3 & 3 others DOWNSTREAM CR31144 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA
X	5894696	X_5894696_SNP [dm3] X_6000663_SNP [dm6]	G	C	1.745e^-4	0.852	UTR_5_PRIME CG4766 UPSTREAM CR44498	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	12267964	3L_12267964_SNP [dm3] 3L_12274864_SNP [dm6]	C	T	1.751e^-4	0.852	INTRON CG4300
3L	5659849	3L_5659849_SNP [dm3] 3L_5666749_SNP [dm6]	C	T	1.757e^-4	0.852	INTRON sif
X	18381957	X_18381957_SNP [dm3] X_18487924_SNP [dm6]	T	C	1.762e^-4	0.852	SYNONYMOUS_CODING CG15046	TF binding site mE1_TFBS_chinmo
3L	489475	3L_489475_SNP [dm3] 3L_489475_SNP [dm6]	A	G	1.771e^-4	0.852	INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8878866	3L_8878866_SNP [dm3] 3L_8885766_SNP [dm6]	G	C	1.772e^-4	0.852	INTRON dally
3L	5603735	3L_5603735_SNP [dm3] 3L_5610635_SNP [dm6]	C	T	1.773e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
3L	10432415	3L_10432415_SNP [dm3] 3L_10439315_SNP [dm6]	T	A	1.775e^-4	0.852	INTERGENIC	transposable element FlyBase
2R	17636180	2R_17636180_SNP [dm3] 2R_21748675_SNP [dm6]	A	G	1.780e^-4	0.852	INTERGENIC
2L	11380203	2L_11380203_SNP [dm3] 2L_11380203_SNP [dm6]	A	T	1.781e^-4	0.852	INTERGENIC	regulatory region REDfly_CRMs
3R	24051550	3R_24051550_SNP [dm3] 3R_28225828_SNP [dm6]	G	C	1.796e^-4	0.852	INTRON CG34354	TF binding site mE1_TFBS_HSA
3L	3796047	3L_3796047_INS [dm3] 3L_3796047_INS [dm6]	T	GGGC	1.799e^-4	0.852	INTRON CG32264
2L	13324162	2L_13324162_SNP [dm3] 2L_13324162_SNP [dm6]	G	A	1.802e^-4	0.852	INTRON CG43778
X	13955851	X_13955851_INS [dm3] X_14061818_INS [dm6]	G	GGCTG	1.810e^-4	0.852	UPSTREAM Ste:CG33236 INTERGENIC
2R	17553607	2R_17553607_SNP [dm3] 2R_21666102_SNP [dm6]	A	T	1.812e^-4	0.852	NON_SYNONYMOUS_CODING CG42364 UTR_3_PRIME CG42362 & 1 other UPSTREAM CG42365	TF binding site BDTNP1_TFBS_twi
X	13344986	X_13344986_SNP [dm3] X_13450953_SNP [dm6]	G	A	1.818e^-4	0.852	INTRON Neto
2L	5519142	2L_5519142_SNP [dm3] 2L_5519142_SNP [dm6]	T	C	1.821e^-4	0.852	SYNONYMOUS_CODING CG7382 UPSTREAM cl DOWNSTREAM CG14020	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	11650075	3L_11650075_SNP [dm3] 3L_11656975_SNP [dm6]	G	A	1.822e^-4	0.852	DOWNSTREAM mir-274 INTRON CG32085 EXON mir-274
2R	4465233	2R_4465233_SNP [dm3] 2R_8577728_SNP [dm6]	T	C	1.831e^-4	0.852	INTRON CG42326
X	10839097	X_10839097_SNP [dm3] X_10945064_SNP [dm6]	C	T	1.833e^-4	0.852	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo
3L	2276681	3L_2276681_SNP [dm3] 3L_2276681_SNP [dm6]	T	A	1.841e^-4	0.852	SYNONYMOUS_CODING yellow-g2
2L	12265453	2L_12265453_SNP [dm3] 2L_12265453_SNP [dm6]	C	G	1.844e^-4	0.852	INTRON aret
3L	7078547	3L_7078547_SNP [dm3] 3L_7085447_SNP [dm6]	G	A	1.844e^-4	0.852	DOWNSTREAM Cpr65Ea INTERGENIC
3R	24054243	3R_24054243_SNP [dm3] 3R_28228521_SNP [dm6]	T	C	1.845e^-4	0.852	INTRON CG34354
3R	15833511	3R_15833511_SNP [dm3] 3R_20007789_SNP [dm6]	A	G	1.848e^-4	0.852	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	8356867	3L_8356867_SNP [dm3] 3L_8363767_SNP [dm6]	G	T	1.860e^-4	0.852	INTERGENIC
3R	15832898	3R_15832898_SNP [dm3] 3R_20007176_SNP [dm6]	A	G	1.862e^-4	0.852	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	6957986	3R_6957986_SNP [dm3] 3R_11132264_SNP [dm6]	T	C	1.862e^-4	0.852	INTERGENIC
2R	17636561	2R_17636561_SNP [dm3] 2R_21749056_SNP [dm6]	G	T	1.878e^-4	0.852	INTERGENIC
3L	16040962	3L_16040962_SNP [dm3] 3L_16047862_SNP [dm6]	C	T	1.881e^-4	0.852	INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	2830845	2R_2830845_SNP [dm3] 2R_6943340_SNP [dm6]	G	A	1.885e^-4	0.852	SYNONYMOUS_CODING CheB42b INTRON mim
2R	16061866	2R_16061866_SNP [dm3] 2R_20174361_SNP [dm6]	T	A	1.891e^-4	0.852	INTERGENIC
3R	7325400	3R_7325400_SNP [dm3] 3R_11499678_SNP [dm6]	C	G	1.895e^-4	0.852	UPSTREAM dpr5 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	9419441	X_9419441_SNP [dm3] X_9525408_SNP [dm6]	T	A	1.895e^-4	0.852	INTRON CG32700
2L	7065843	2L_7065843_SNP [dm3] 2L_7065843_SNP [dm6]	T	G	1.906e^-4	0.852	UPSTREAM Nuf2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3R	22748490	3R_22748490_DEL [dm3] 3R_26922768_DEL [dm6]	TAT	T	1.912e^-4	0.852	INTRON sda
2R	19882150	2R_19882150_SNP [dm3] 2R_23994627_SNP [dm6]	T	G	1.921e^-4	0.852	UTR_5_PRIME CG3860 DOWNSTREAM Unc-89
3R	8500607	3R_8500607_SNP [dm3] 3R_12674885_SNP [dm6]	G	A	1.921e^-4	0.852	DOWNSTREAM CG14395 INTRON CG6188	TF binding site mE1_TFBS_cad
3R	24054113	3R_24054113_SNP [dm3] 3R_28228391_SNP [dm6]	G	A	1.927e^-4	0.852	INTRON CG34354
2R	17834431	2R_17834431_SNP [dm3] 2R_21946926_SNP [dm6]	T	C	1.927e^-4	0.852	DOWNSTREAM Fili INTERGENIC
2L	2550415	2L_2550415_SNP [dm3] 2L_2550415_SNP [dm6]	C	T	1.929e^-4	0.852	DOWNSTREAM CG3515 INTERGENIC
2L	3673700	2L_3673700_SNP [dm3] 2L_3673700_SNP [dm6]	G	A	1.930e^-4	0.852	INTRON CG34340
3L	5739023	3L_5739023_SNP [dm3] 3L_5745923_SNP [dm6]	A	T	1.937e^-4	0.852	UTR_3_PRIME sif INTRON sif
2L	8064497	2L_8064497_SNP [dm3] 2L_8064497_SNP [dm6]	A	G	1.938e^-4	0.852	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14149300	2R_14149300_INS [dm3] 2R_18261795_INS [dm6]	T	TC	1.944e^-4	0.852	INTERGENIC
2R	14149303	2R_14149303_DEL [dm3] 2R_18261798_DEL [dm6]	AAACT	A	1.944e^-4	0.852	INTERGENIC
3R	9125183	3R_9125183_SNP [dm3] 3R_13299461_SNP [dm6]	G	A	1.952e^-4	0.852	SYNONYMOUS_CODING CG8774
2R	13726534	2R_13726534_DEL [dm3] 2R_17839029_DEL [dm6]	TT	T	1.954e^-4	0.852	INTRON grh	TF binding site BDTNP1_TFBS_da
3R	6669639	3R_6669639_SNP [dm3] 3R_10843917_SNP [dm6]	G	C	1.964e^-4	0.852	SYNONYMOUS_CODING Cad86C	TF binding site mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
3L	18191000	3L_18191000_SNP [dm3] 3L_18197900_SNP [dm6]	A	T	1.966e^-4	0.852	DOWNSTREAM CR45234 INTERGENIC
3L	494797	3L_494797_INS [dm3] 3L_494797_INS [dm6]	A	AA	1.981e^-4	0.852	INTRON klar
2R	18084900	2R_18084900_SNP [dm3] 2R_22197395_SNP [dm6]	T	A	1.988e^-4	0.852	UPSTREAM snoRNA:Or-CD1 INTRON Swim	TF binding site BDTNP1_TFBS_dl
X	22368881	X_22368881_SNP [dm3] X_22967045_SNP [dm6]	A	T	1.988e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7281419	2R_7281419_SNP [dm3] 2R_11393914_SNP [dm6]	G	T	1.988e^-4	0.852	UPSTREAM tRNA:CR30257 INTRON sprt
2L	4592087	2L_4592087_SNP [dm3] 2L_4592087_SNP [dm6]	C	A	1.999e^-4	0.852	UPSTREAM dp INTRON dp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	23117963	3L_23117963_SNP [dm3] 3L_23124863_SNP [dm6]	A	T	2.002e^-4	0.852	INTERGENIC
2R	14086117	2R_14086117_SNP [dm3] 2R_18198612_SNP [dm6]	G	A	2.022e^-4	0.852	INTERGENIC
3R	12732724	3R_12732724_SNP [dm3] 3R_16907002_SNP [dm6]	C	T	2.032e^-4	0.852	INTRON iab-8	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	8514595	3R_8514595_SNP [dm3] 3R_12688873_SNP [dm6]	T	C	2.045e^-4	0.852	DOWNSTREAM Su_fu_ INTRON kar	TF binding site mE1_TFBS_chinmo
X	5680720	X_5680720_SNP [dm3] X_5786687_SNP [dm6]	T	G	2.049e^-4	0.852	INTRON CG42699
3L	9751938	3L_9751938_SNP [dm3] 3L_9758838_SNP [dm6]	A	G	2.049e^-4	0.852	INTRON CG42268
3R	7867885	3R_7867885_SNP [dm3] 3R_12042163_SNP [dm6]	T	A	2.052e^-4	0.852	NON_SYNONYMOUS_CODING CG14736 SPLICE_SITE_REGION CG14736
3L	8029516	3L_8029516_SNP [dm3] 3L_8036416_SNP [dm6]	C	T	2.053e^-4	0.852	INTRON nmo	TF binding site BDTNP1_TFBS_twi
3L	4118497	3L_4118497_SNP [dm3] 3L_4118497_SNP [dm6]	G	T	2.063e^-4	0.852	INTRON Chd64
X	22397621	X_22397621_SNP [dm3] X_22995785_SNP [dm6]	T	C	2.067e^-4	0.852	UTR_5_PRIME stnB & 1 other
2L	17980024	2L_17980024_SNP [dm3] 2L_17980024_SNP [dm6]	T	C	2.068e^-4	0.852	SYNONYMOUS_CODING btv
2L	7065861	2L_7065861_SNP [dm3] 2L_7065861_SNP [dm6]	C	T	2.068e^-4	0.852	UPSTREAM Nuf2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	3796116	3L_3796116_SNP [dm3] 3L_3796116_SNP [dm6]	G	A	2.083e^-4	0.852	INTRON CG32264
2R	11681033	2R_11681033_SNP [dm3] 2R_15793528_SNP [dm6]	G	T	2.085e^-4	0.852	UPSTREAM tun INTRON Zasp52	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14254455	3R_14254455_SNP [dm3] 3R_18428733_SNP [dm6]	T	C	2.087e^-4	0.852	UTR_3_PRIME fru INTRON fru
3R	22684412	3R_22684412_SNP [dm3] 3R_26858690_SNP [dm6]	A	G	2.090e^-4	0.852	INTRON Lerp	TF binding site mE1_TFBS_chinmo
X	10839490	X_10839490_SNP [dm3] X_10945457_SNP [dm6]	G	A	2.096e^-4	0.852	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo
X	20349070	X_20349070_SNP [dm3] X_20478043_SNP [dm6]	C	G	2.097e^-4	0.852	SYNONYMOUS_CODING RhoGAP19D
2L	2738328	2L_2738328_SNP [dm3] 2L_2738328_SNP [dm6]	C	T	2.100e^-4	0.852	SYNONYMOUS_CODING CG31689 DOWNSTREAM mir-4914	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5591448	3L_5591448_SNP [dm3] 3L_5598348_SNP [dm6]	G	C	2.102e^-4	0.852	DOWNSTREAM CG5150 & 1 other INTERGENIC
2L	9203846	2L_9203846_SNP [dm3] 2L_9203846_SNP [dm6]	T	A	2.109e^-4	0.852	INTRON tai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	24052222	3R_24052222_SNP [dm3] 3R_28226500_SNP [dm6]	C	T	2.119e^-4	0.852	INTRON CG34354
2L	3532041	2L_3532041_SNP [dm3] 2L_3532041_SNP [dm6]	A	T	2.120e^-4	0.852	INTRON Che-13	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	5087199	3R_5087199_SNP [dm3] 3R_9261477_SNP [dm6]	A	G	2.124e^-4	0.852	INTRON VhaM8.9	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6931691	3R_6931691_DEL [dm3] 3R_11105969_DEL [dm6]	TTTTATA	T	2.138e^-4	0.852	INTERGENIC
X	20374576	X_20374576_SNP [dm3] X_20503549_SNP [dm6]	C	T	2.139e^-4	0.852	INTRON RhoGAP19D
2L	12155772	2L_12155772_SNP [dm3] 2L_12155772_SNP [dm6]	G	A	2.145e^-4	0.852	INTRON CG31760
3L	16874384	3L_16874384_SNP [dm3] 3L_16881284_SNP [dm6]	T	C	2.148e^-4	0.852	INTRON Lmpt
X	10500200	X_10500200_SNP [dm3] X_10606167_SNP [dm6]	T	C	2.160e^-4	0.852	INTRON CG43347
3L	12623391	3L_12623391_SNP [dm3] 3L_12630291_SNP [dm6]	A	C	2.162e^-4	0.852	INTRON CR32111
2R	17790134	2R_17790134_SNP [dm3] 2R_21902629_SNP [dm6]	C	T	2.164e^-4	0.852	INTRON Fili
3L	23087774	3L_23087774_SNP [dm3] 3L_23094674_SNP [dm6]	C	A	2.165e^-4	0.852	INTRON RpL10
2L	9640713	2L_9640713_SNP [dm3] 2L_9640713_SNP [dm6]	G	A	2.167e^-4	0.852	INTRON Apoltp
3R	2985542	3R_2985542_SNP [dm3] 3R_7159820_SNP [dm6]	G	A	2.172e^-4	0.852	INTERGENIC
3R	10264783	3R_10264783_SNP [dm3] 3R_14439061_SNP [dm6]	G	A	2.180e^-4	0.852	INTRON cv-c
3L	18313210	3L_18313210_SNP [dm3] 3L_18320110_SNP [dm6]	T	C	2.183e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_inv
X	9786599	X_9786599_SNP [dm3] X_9892566_SNP [dm6]	C	G	2.186e^-4	0.852	INTRON CG15249
X	22409001	X_22409001_SNP [dm3] X_23007165_SNP [dm6]	A	C	2.186e^-4	0.852	UPSTREAM CR45009 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	9469465	2R_9469465_DEL [dm3] 2R_13581960_DEL [dm6]	AGCA	A	2.189e^-4	0.852	INTRON CG6191 & 1 other	TF binding site mE1_TFBS_sens
3R	7048700	3R_7048700_INS [dm3] 3R_11222978_INS [dm6]	T	TT	2.191e^-4	0.852	UTR_3_PRIME RpL3 UPSTREAM snoRNA:Psi28S-291 DOWNSTREAM snoRNA:Me18S-C1096 & 1 other INTRON RpL3 EXON CR31144	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	12156516	3L_12156516_SNP [dm3] 3L_12163416_SNP [dm6]	G	A	2.191e^-4	0.852	DOWNSTREAM Rh7 INTRON CG9760	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	7565854	3R_7565854_SNP [dm3] 3R_11740132_SNP [dm6]	A	C	2.193e^-4	0.852	NON_SYNONYMOUS_CODING Blm	TF binding site mE1_TFBS_sens
2L	3814515	2L_3814515_SNP [dm3] 2L_3814515_SNP [dm6]	G	A	2.196e^-4	0.852	UPSTREAM CR44076 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3R	25528961	3R_25528961_SNP [dm3] 3R_29703239_SNP [dm6]	T	C	2.206e^-4	0.852	INTERGENIC
2R	17275482	2R_17275482_SNP [dm3] 2R_21387977_SNP [dm6]	T	C	2.210e^-4	0.852	SYNONYMOUS_CODING Acox57D-p	TF binding site mE1_TFBS_sens
3L	12893217	3L_12893217_SNP [dm3] 3L_12900117_SNP [dm6]	A	T	2.213e^-4	0.852	INTERGENIC
X	3215303	X_3215303_SNP [dm3] X_3321270_SNP [dm6]	T	G	2.219e^-4	0.852	INTRON CR44886 & 1 other
3R	15833654	3R_15833654_DEL [dm3] 3R_20007932_DEL [dm6]	TTTTTCGAGGC...	T	2.224e^-4	0.852	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	20571213	3L_20571213_SNP [dm3] 3L_20578113_SNP [dm6]	A	T	2.226e^-4	0.852	INTERGENIC
2R	11681032	2R_11681032_SNP [dm3] 2R_15793527_SNP [dm6]	G	A	2.235e^-4	0.852	UPSTREAM tun INTRON Zasp52	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16758860	3L_16758860_SNP [dm3] 3L_16765760_SNP [dm6]	A	G	2.235e^-4	0.852	UPSTREAM Nrt INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3531820	2L_3531820_SNP [dm3] 2L_3531820_SNP [dm6]	A	G	2.239e^-4	0.852	SYNONYMOUS_CODING Che-13	TF binding site mE1_TFBS_sens
X	22396276	X_22396276_SNP [dm3] X_22994440_SNP [dm6]	T	G	2.240e^-4	0.852	INTRON stnA & 1 other
3L	4147952	3L_4147952_SNP [dm3] 3L_4147952_SNP [dm6]	A	C	2.240e^-4	0.852	UPSTREAM CG1299 INTERGENIC
3R	7045919	3R_7045919_SNP [dm3] 3R_11220197_SNP [dm6]	C	T	2.241e^-4	0.852	UPSTREAM CG6689 DOWNSTREAM CG6693 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA
3R	7045922	3R_7045922_SNP [dm3] 3R_11220200_SNP [dm6]	T	A	2.241e^-4	0.852	UPSTREAM CG6689 DOWNSTREAM CG6693 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA
2R	8663898	2R_8663898_SNP [dm3] 2R_12776393_SNP [dm6]	T	C	2.244e^-4	0.852	UPSTREAM CR45266 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	1144029	2R_1144029_INS [dm3] 2R_5256524_INS [dm6]	T	TC	2.247e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12313932	X_12313932_SNP [dm3] X_12419899_SNP [dm6]	C	T	2.268e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	16786344	3R_16786344_SNP [dm3] 3R_20960622_SNP [dm6]	A	G	2.270e^-4	0.852	INTRON Atpalpha
3R	16786412	3R_16786412_SNP [dm3] 3R_20960690_SNP [dm6]	T	A	2.270e^-4	0.852	INTRON Atpalpha
3L	10432412	3L_10432412_SNP [dm3] 3L_10439312_SNP [dm6]	C	G	2.273e^-4	0.852	INTERGENIC	transposable element FlyBase
2L	11380194	2L_11380194_INS [dm3] 2L_11380194_INS [dm6]	T	TGCATT	2.276e^-4	0.852	INTERGENIC	regulatory region REDfly_CRMs
2L	3532054	2L_3532054_SNP [dm3] 2L_3532054_SNP [dm6]	T	A	2.277e^-4	0.852	INTRON Che-13	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	2268317	2L_2268317_SNP [dm3] 2L_2268317_SNP [dm6]	A	G	2.278e^-4	0.852	UTR_3_PRIME CG17242
X	19666962	X_19666962_SNP [dm3] X_19772929_SNP [dm6]	T	A	2.290e^-4	0.852	INTRON vfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6704066	3L_6704066_SNP [dm3] 3L_6710966_SNP [dm6]	T	G	2.291e^-4	0.852	INTERGENIC
3R	27448719	3R_27448719_SNP [dm3] 3R_31622997_SNP [dm6]	C	A	2.292e^-4	0.852	DOWNSTREAM pasha INTRON kek6
2R	17796896	2R_17796896_SNP [dm3] 2R_21909391_SNP [dm6]	G	A	2.296e^-4	0.852	INTRON Fili
2L	7138066	2L_7138066_SNP [dm3] 2L_7138066_SNP [dm6]	G	A	2.307e^-4	0.852	INTRON Pvf3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25527804	3R_25527804_SNP [dm3] 3R_29702082_SNP [dm6]	C	T	2.309e^-4	0.852	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24052368	3R_24052368_SNP [dm3] 3R_28226646_SNP [dm6]	T	A	2.318e^-4	0.852	INTRON CG34354
3R	24052398	3R_24052398_SNP [dm3] 3R_28226676_SNP [dm6]	C	T	2.318e^-4	0.852	INTRON CG34354
3L	7078530	3L_7078530_SNP [dm3] 3L_7085430_SNP [dm6]	T	G	2.319e^-4	0.852	DOWNSTREAM Cpr65Ea INTERGENIC
3L	5591430	3L_5591430_SNP [dm3] 3L_5598330_SNP [dm6]	A	G	2.324e^-4	0.852	DOWNSTREAM CG5150 & 1 other INTERGENIC
3R	16948510	3R_16948510_SNP [dm3] 3R_21122788_SNP [dm6]	T	G	2.324e^-4	0.852	INTRON slmb
3L	697484	3L_697484_SNP [dm3] 3L_697484_SNP [dm6]	A	G	2.328e^-4	0.852	INTRON CG13894	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	2738232	2L_2738232_SNP [dm3] 2L_2738232_SNP [dm6]	A	G	2.336e^-4	0.852	SYNONYMOUS_CODING CG31689 DOWNSTREAM mir-4914	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3539958	3L_3539958_SNP [dm3] 3L_3539958_SNP [dm6]	T	C	2.337e^-4	0.852	INTRON Eip63E
2L	7089185	2L_7089185_SNP [dm3] 2L_7089185_SNP [dm6]	T	C	2.339e^-4	0.852	INTERGENIC
3R	5099295	3R_5099295_SNP [dm3] 3R_9273573_SNP [dm6]	C	A	2.339e^-4	0.852	INTERGENIC
2R	7032458	2R_7032458_SNP [dm3] 2R_11144953_SNP [dm6]	T	G	2.343e^-4	0.852	INTRON CG13229	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	11681004	2R_11681004_SNP [dm3] 2R_15793499_SNP [dm6]	G	A	2.344e^-4	0.852	UPSTREAM tun INTRON Zasp52	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	20436784	2R_20436784_SNP [dm3] 2R_24549261_SNP [dm6]	T	C	2.350e^-4	0.852	INTRON CG4622 & 1 other
3R	24051554	3R_24051554_SNP [dm3] 3R_28225832_SNP [dm6]	A	C	2.356e^-4	0.852	INTRON CG34354	TF binding site mE1_TFBS_HSA
2L	11380189	2L_11380189_SNP [dm3] 2L_11380189_SNP [dm6]	C	T	2.377e^-4	0.852	INTERGENIC	regulatory region REDfly_CRMs
3R	16786411	3R_16786411_SNP [dm3] 3R_20960689_SNP [dm6]	A	T	2.378e^-4	0.852	INTRON Atpalpha
3L	12134849	3L_12134849_SNP [dm3] 3L_12141749_SNP [dm6]	A	T	2.382e^-4	0.852	INTRON RhoGAP68F
X	6857632	X_6857632_SNP [dm3] X_6963599_SNP [dm6]	A	C	2.393e^-4	0.852	SYNONYMOUS_CODING CG14431 INTRON CG32732	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2621650	2L_2621650_SNP [dm3] 2L_2621650_SNP [dm6]	A	C	2.397e^-4	0.852	DOWNSTREAM CG43403 INTERGENIC
2L	4070826	2L_4070826_SNP [dm3] 2L_4070826_SNP [dm6]	C	T	2.400e^-4	0.852	INTRON ed
3R	6899906	3R_6899906_SNP [dm3] 3R_11074184_SNP [dm6]	C	T	2.403e^-4	0.852	INTERGENIC
2R	19868454	2R_19868454_SNP [dm3] 2R_23980931_SNP [dm6]	T	G	2.408e^-4	0.852	INTRON Sox14	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	24217520	3R_24217520_SNP [dm3] 3R_28391798_SNP [dm6]	T	A	2.411e^-4	0.852	INTERGENIC
2R	19846070	2R_19846070_SNP [dm3] 2R_23958547_SNP [dm6]	T	G	2.413e^-4	0.852	INTRON alpha-catenin-related
2R	11900213	2R_11900213_SNP [dm3] 2R_16012708_SNP [dm6]	A	C	2.424e^-4	0.852	SYNONYMOUS_CODING CG8389	TF binding site BDTNP1_TFBS_sna
3L	12135158	3L_12135158_SNP [dm3] 3L_12142058_SNP [dm6]	T	C	2.424e^-4	0.852	SYNONYMOUS_CODING RhoGAP68F
3R	6931685	3R_6931685_SNP [dm3] 3R_11105963_SNP [dm6]	A	T	2.428e^-4	0.852	INTERGENIC
3L	9593446	3L_9593446_SNP [dm3] 3L_9600346_SNP [dm6]	C	T	2.430e^-4	0.852	DOWNSTREAM CG3088 & 1 other INTERGENIC
3R	7047662	3R_7047662_SNP [dm3] 3R_11221940_SNP [dm6]	T	A	2.434e^-4	0.852	UPSTREAM snoRNA:Me18S-C1096 & 2 others DOWNSTREAM CR31144 INTRON RpL3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA
2L	18270620	2L_18270620_SNP [dm3] 2L_18270620_SNP [dm6]	T	G	2.439e^-4	0.852	INTRON CG42750
X	18257794	X_18257794_SNP [dm3] X_18363761_SNP [dm6]	C	G	2.441e^-4	0.852	INTERGENIC
3L	2835654	3L_2835654_SNP [dm3] 3L_2835654_SNP [dm6]	T	A	2.448e^-4	0.852	INTRON CG43444
2L	3532035	2L_3532035_SNP [dm3] 2L_3532035_SNP [dm6]	A	C	2.453e^-4	0.852	INTRON Che-13	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
X	9020201	X_9020201_SNP [dm3] X_9126168_SNP [dm6]	T	C	2.459e^-4	0.852	SYNONYMOUS_CODING fend	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2R	6526070	2R_6526070_SNP [dm3] 2R_10638565_SNP [dm6]	A	G	2.461e^-4	0.852	SPLICE_SITE_REGION CG11883 INTRON CG11883	TF binding site mE1_TFBS_cad
X	20441811	X_20441811_SNP [dm3] X_20570784_SNP [dm6]	C	T	2.468e^-4	0.852	INTERGENIC
3L	7728460	3L_7728460_SNP [dm3] 3L_7735360_SNP [dm6]	C	A	2.472e^-4	0.852	INTRON CG32373 & 1 other
3R	8514739	3R_8514739_SNP [dm3] 3R_12689017_SNP [dm6]	C	T	2.477e^-4	0.852	DOWNSTREAM Su_fu_ INTRON kar	TF binding site mE1_TFBS_chinmo
2R	17425899	2R_17425899_SNP [dm3] 2R_21538394_SNP [dm6]	C	T	2.480e^-4	0.852	SYNONYMOUS_CODING CG33226 UPSTREAM CG30287 INTRON Egfr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5092982	3R_5092982_SNP [dm3] 3R_9267260_SNP [dm6]	G	A	2.481e^-4	0.852	NON_SYNONYMOUS_CODING Vps16A UPSTREAM Aats-trp	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
2R	17637480	2R_17637480_SNP [dm3] 2R_21749975_SNP [dm6]	T	C	2.493e^-4	0.852	INTERGENIC
2L	1655178	2L_1655178_SNP [dm3] 2L_1655178_SNP [dm6]	C	T	2.494e^-4	0.852	INTRON chinmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	23088601	3L_23088601_SNP [dm3] 3L_23095501_SNP [dm6]	C	T	2.495e^-4	0.852	UPSTREAM RpL10 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2R	3925805	2R_3925805_SNP [dm3] 2R_8038300_SNP [dm6]	G	A	2.496e^-4	0.852	INTRON Optix	regulatory region REDfly_CRMs
2R	11677723	2R_11677723_SNP [dm3] 2R_15790218_SNP [dm6]	A	T	2.504e^-4	0.852	INTRON Zasp52	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	11223337	3R_11223337_SNP [dm3] 3R_15397615_SNP [dm6]	A	T	2.507e^-4	0.852	INTRON Rbp	TF binding site BDTNP1_TFBS_dl
3R	22765509	3R_22765509_SNP [dm3] 3R_26939787_SNP [dm6]	T	C	2.508e^-4	0.852	INTRON sda
3L	11236601	3L_11236601_SNP [dm3] 3L_11243501_SNP [dm6]	G	A	2.511e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	7094935	3R_7094935_SNP [dm3] 3R_11269213_SNP [dm6]	G	T	2.516e^-4	0.852	DOWNSTREAM CR31386 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	2865070	X_2865070_INS [dm3] X_2971037_INS [dm6]	C	CC	2.521e^-4	0.852	INTRON kirre & 1 other
3L	12057504	3L_12057504_SNP [dm3] 3L_12064404_SNP [dm6]	G	T	2.525e^-4	0.852	INTRON rols
X	8450802	X_8450802_SNP [dm3] X_8556769_SNP [dm6]	A	G	2.528e^-4	0.852	SYNONYMOUS_CODING IntS4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8874383	3L_8874383_SNP [dm3] 3L_8881283_SNP [dm6]	G	A	2.551e^-4	0.852	INTRON dally
2L	2268279	2L_2268279_SNP [dm3] 2L_2268279_SNP [dm6]	A	C	2.559e^-4	0.852	UTR_3_PRIME CG17242 DOWNSTREAM CG17242
2R	9565682	2R_9565682_SNP [dm3] 2R_13678177_SNP [dm6]	C	T	2.562e^-4	0.852	INTRON fas
3R	7049669	3R_7049669_SNP [dm3] 3R_11223947_SNP [dm6]	T	C	2.568e^-4	0.852	SYNONYMOUS_CODING RpL3 UTR_3_PRIME RpL3 UPSTREAM CR31144 & 1 other DOWNSTREAM RpL3 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2R	9459493	2R_9459493_SNP [dm3] 2R_13571988_SNP [dm6]	C	T	2.574e^-4	0.852	INTRON CG42807	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
3R	21824251	3R_21824251_SNP [dm3] 3R_25998529_SNP [dm6]	C	T	2.576e^-4	0.852	UTR_3_PRIME E_spl_mdelta-HLH	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	12565386	3L_12565386_SNP [dm3] 3L_12572286_SNP [dm6]	T	C	2.577e^-4	0.852	INTRON sowah	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10296659	2L_10296659_SNP [dm3] 2L_10296659_SNP [dm6]	C	A	2.578e^-4	0.852	SYNONYMOUS_CODING CYLD	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10106344	2L_10106344_SNP [dm3] 2L_10106344_SNP [dm6]	A	G	2.588e^-4	0.852	INTRON CG44153 & 1 other
2L	13912873	2L_13912873_SNP [dm3] 2L_13912873_SNP [dm6]	T	C	2.593e^-4	0.852	DOWNSTREAM Acyp INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	6931682	3R_6931682_SNP [dm3] 3R_11105960_SNP [dm6]	G	A	2.594e^-4	0.852	INTERGENIC
2R	17636850	2R_17636850_SNP [dm3] 2R_21749345_SNP [dm6]	T	C	2.598e^-4	0.852	INTERGENIC
2R	19241602	2R_19241602_SNP [dm3] 2R_23354079_SNP [dm6]	C	A	2.601e^-4	0.852	UPSTREAM CG30409 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	13441932	2L_13441932_SNP [dm3] 2L_13441932_SNP [dm6]	A	G	2.602e^-4	0.852	INTRON CG42784 EXON CR45683
2L	17781419	2L_17781419_SNP [dm3] 2L_17781419_SNP [dm6]	A	T	2.604e^-4	0.852	INTERGENIC
3R	13304120	3R_13304120_SNP [dm3] 3R_17478398_SNP [dm6]	C	T	2.607e^-4	0.852	INTRON Dscam3
3R	14687657	3R_14687657_SNP [dm3] 3R_18861935_SNP [dm6]	A	T	2.613e^-4	0.852	INTERGENIC
3R	4616303	3R_4616303_SNP [dm3] 3R_8790581_SNP [dm6]	T	A	2.613e^-4	0.852	UTR_5_PRIME Pif1B & 1 other INTRON Pif1A & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13195510	3R_13195510_SNP [dm3] 3R_17369788_SNP [dm6]	T	G	2.616e^-4	0.852	INTERGENIC
2R	13413523	2R_13413523_SNP [dm3] 2R_17526018_SNP [dm6]	G	C	2.628e^-4	0.852	SYNONYMOUS_CODING Patronin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	5079577	3R_5079577_SNP [dm3] 3R_9253855_SNP [dm6]	T	C	2.643e^-4	0.852	DOWNSTREAM St2 EXON CR16735
2R	17553654	2R_17553654_SNP [dm3] 2R_21666149_SNP [dm6]	T	C	2.643e^-4	0.852	NON_SYNONYMOUS_CODING CG42364 UPSTREAM CG42365 DOWNSTREAM CG42362 & 1 other	TF binding site BDTNP1_TFBS_twi
3R	10259983	3R_10259983_SNP [dm3] 3R_14434261_SNP [dm6]	A	C	2.648e^-4	0.852	INTRON cv-c
2R	11681210	2R_11681210_SNP [dm3] 2R_15793705_SNP [dm6]	G	A	2.648e^-4	0.852	UPSTREAM tun INTRON Zasp52	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA
3L	2749207	3L_2749207_SNP [dm3] 3L_2749207_SNP [dm6]	G	A	2.650e^-4	0.852	INTRON Mrtf
2L	3531250	2L_3531250_SNP [dm3] 2L_3531250_SNP [dm6]	G	C	2.659e^-4	0.852	SPLICE_SITE_REGION Che-13 UPSTREAM Spindly INTRON Che-13
3R	5091823	3R_5091823_SNP [dm3] 3R_9266101_SNP [dm6]	T	A	2.660e^-4	0.852	UPSTREAM Vps16A INTRON Aats-trp	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	7894425	3R_7894425_SNP [dm3] 3R_12068703_SNP [dm6]	G	C	2.662e^-4	0.852	UTR_3_PRIME CG14741
2R	14637079	2R_14637079_SNP [dm3] 2R_18749574_SNP [dm6]	G	T	2.683e^-4	0.852	INTRON Hs3st-A
3R	7344161	3R_7344161_SNP [dm3] 3R_11518439_SNP [dm6]	A	G	2.686e^-4	0.852	INTERGENIC
3R	16467739	3R_16467739_SNP [dm3] 3R_20642017_SNP [dm6]	C	A	2.689e^-4	0.852	SYNONYMOUS_CODING Lrrk
X	10052639	X_10052639_SNP [dm3] X_10158606_SNP [dm6]	A	G	2.692e^-4	0.852	UTR_5_PRIME CG43902 INTRON CR44894
3R	7034033	3R_7034033_SNP [dm3] 3R_11208311_SNP [dm6]	A	G	2.697e^-4	0.852	NON_SYNONYMOUS_CODING cu DOWNSTREAM SdhC
X	13499079	X_13499079_SNP [dm3] X_13605046_SNP [dm6]	A	G	2.697e^-4	0.852	UPSTREAM CG11178 EXON CR44654	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
2L	2543859	2L_2543859_SNP [dm3] 2L_2543859_SNP [dm6]	A	T	2.700e^-4	0.852	INTERGENIC
3R	6993633	3R_6993633_SNP [dm3] 3R_11167911_SNP [dm6]	A	T	2.713e^-4	0.852	NON_SYNONYMOUS_CODING Ugt86De DOWNSTREAM Ugt35b
2L	15764540	2L_15764540_SNP [dm3] 2L_15764540_SNP [dm6]	A	G	2.732e^-4	0.852	SYNONYMOUS_CODING CG3793	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13388996	2R_13388996_SNP [dm3] 2R_17501491_SNP [dm6]	A	T	2.734e^-4	0.852	UPSTREAM CG43164 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	9509261	3L_9509261_SNP [dm3] 3L_9516161_SNP [dm6]	G	T	2.741e^-4	0.852	INTRON CG33700
3L	1887968	3L_1887968_SNP [dm3] 3L_1887968_SNP [dm6]	G	T	2.753e^-4	0.852	INTRON Tmhs	TF binding site mE1_TFBS_cnc mE1_TFBS_inv
3L	17370940	3L_17370940_SNP [dm3] 3L_17377840_SNP [dm6]	T	G	2.753e^-4	0.852	INTRON Cad74A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	14637550	2R_14637550_SNP [dm3] 2R_18750045_SNP [dm6]	G	T	2.754e^-4	0.852	INTRON Hs3st-A
3R	9109435	3R_9109435_SNP [dm3] 3R_13283713_SNP [dm6]	G	A	2.756e^-4	0.852	SYNONYMOUS_CODING CG8630	TF binding site mE1_TFBS_cad
X	9224474	X_9224474_SNP [dm3] X_9330441_SNP [dm6]	G	T	2.761e^-4	0.852	UTR_5_PRIME CG34450 DOWNSTREAM CG34449 INTRON CG34449
X	18970213	X_18970213_DEL [dm3] X_19076180_DEL [dm6]	AA	A	2.769e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3532042	2L_3532042_SNP [dm3] 2L_3532042_SNP [dm6]	T	C	2.773e^-4	0.852	INTRON Che-13	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	2701668	2L_2701668_SNP [dm3] 2L_2701668_SNP [dm6]	C	T	2.786e^-4	0.852	INTRON CG31690	TF binding site mE1_TFBS_chinmo
3L	2663269	3L_2663269_SNP [dm3] 3L_2663269_SNP [dm6]	C	A	2.787e^-4	0.852	SPLICE_SITE_REGION CG33234 SYNONYMOUS_CODING CG33234 INTRON Fife
3L	4887093	3L_4887093_SNP [dm3] 3L_4887093_SNP [dm6]	T	G	2.789e^-4	0.852	INTRON CG17150
3R	23279569	3R_23279569_SNP [dm3] 3R_27453847_SNP [dm6]	G	T	2.794e^-4	0.852	INTERGENIC
3R	6969898	3R_6969898_SNP [dm3] 3R_11144176_SNP [dm6]	C	T	2.801e^-4	0.852	DOWNSTREAM CheA86a INTERGENIC
2L	17683944	2L_17683944_SNP [dm3] 2L_17683944_SNP [dm6]	A	G	2.804e^-4	0.852	INTRON CadN
3L	3796121	3L_3796121_SNP [dm3] 3L_3796121_SNP [dm6]	G	T	2.804e^-4	0.852	INTRON CG32264
2R	19895090	2R_19895090_SNP [dm3] 2R_24007567_SNP [dm6]	C	G	2.810e^-4	0.852	INTRON Unc-89	TF binding site mE1_TFBS_cad
3L	4147954	3L_4147954_SNP [dm3] 3L_4147954_SNP [dm6]	A	C	2.814e^-4	0.852	UPSTREAM CG1299 INTERGENIC
3R	8584431	3R_8584431_SNP [dm3] 3R_12758709_SNP [dm6]	T	G	2.825e^-4	0.852	INTRON beat-Vc
3L	9593448	3L_9593448_SNP [dm3] 3L_9600348_SNP [dm6]	C	T	2.828e^-4	0.852	DOWNSTREAM CG3088 & 1 other INTERGENIC
X	7532481	X_7532481_SNP [dm3] X_7638448_SNP [dm6]	A	C	2.842e^-4	0.852	INTRON ct
3L	2749209	3L_2749209_SNP [dm3] 3L_2749209_SNP [dm6]	T	A	2.845e^-4	0.852	INTRON Mrtf
3R	16764538	3R_16764538_SNP [dm3] 3R_20938816_SNP [dm6]	G	A	2.849e^-4	0.852	INTRON CG31191
2R	11677774	2R_11677774_SNP [dm3] 2R_15790269_SNP [dm6]	T	A	2.853e^-4	0.852	INTRON Zasp52	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	7470466	3L_7470466_SNP [dm3] 3L_7477366_SNP [dm6]	T	A	2.858e^-4	0.852	INTERGENIC
2R	18438126	2R_18438126_SNP [dm3] 2R_22550621_SNP [dm6]	G	A	2.860e^-4	0.852	NON_SYNONYMOUS_CODING CG6018 INTRON px	TF binding site mE1_TFBS_cad
3R	7044836	3R_7044836_SNP [dm3] 3R_11219114_SNP [dm6]	G	A	2.861e^-4	0.852	NON_SYNONYMOUS_CODING CG6689	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	2684915	2L_2684915_SNP [dm3] 2L_2684915_SNP [dm6]	C	G	2.861e^-4	0.852	INTRON CG31690
2R	17637990	2R_17637990_SNP [dm3] 2R_21750485_SNP [dm6]	T	C	2.865e^-4	0.852	INTERGENIC
2L	5530957	2L_5530957_SNP [dm3] 2L_5530957_SNP [dm6]	C	T	2.867e^-4	0.852	SYNONYMOUS_CODING CG7277 DOWNSTREAM CG31915 INTRON Cap-D3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16062097	2R_16062097_SNP [dm3] 2R_20174592_SNP [dm6]	C	T	2.869e^-4	0.852	INTERGENIC
3R	9600748	3R_9600748_SNP [dm3] 3R_13775026_SNP [dm6]	T	G	2.871e^-4	0.852	INTRON CG9297
X	18622262	X_18622262_SNP [dm3] X_18728229_SNP [dm6]	C	A	2.879e^-4	0.852	INTERGENIC
X	10499777	X_10499777_SNP [dm3] X_10605744_SNP [dm6]	T	A	2.881e^-4	0.852	SYNONYMOUS_CODING CG43347	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2485909	3L_2485909_SNP [dm3] 3L_2485909_SNP [dm6]	T	C	2.897e^-4	0.852	INTRON CG45186	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
2R	19882840	2R_19882840_SNP [dm3] 2R_23995317_SNP [dm6]	T	G	2.901e^-4	0.852	UPSTREAM CG3860 DOWNSTREAM Unc-89 INTERGENIC
X	17388501	X_17388501_SNP [dm3] X_17494468_SNP [dm6]	A	T	2.907e^-4	0.852	INTRON CG43658
2R	9889641	2R_9889641_SNP [dm3] 2R_14002136_SNP [dm6]	A	G	2.907e^-4	0.852	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	14040926	3L_14040926_SNP [dm3] 3L_14047826_SNP [dm6]	T	C	2.915e^-4	0.852	INTRON blue	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	391927	3L_391927_INS [dm3] 3L_391927_INS [dm6]	A	AATTGGAT	2.916e^-4	0.852	DOWNSTREAM CR45378 INTRON trh
2L	3531973	2L_3531973_SNP [dm3] 2L_3531973_SNP [dm6]	A	G	2.918e^-4	0.852	SYNONYMOUS_CODING Che-13	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_sens
3L	7079593	3L_7079593_SNP [dm3] 3L_7086493_SNP [dm6]	A	T	2.922e^-4	0.852	INTRON Cpr65Ea
3L	13175477	3L_13175477_SNP [dm3] 3L_13182377_SNP [dm6]	C	G	2.925e^-4	0.852	INTERGENIC
3R	14254380	3R_14254380_SNP [dm3] 3R_18428658_SNP [dm6]	A	C	2.932e^-4	0.852	UTR_3_PRIME fru INTRON fru
3L	22842099	3L_22842099_SNP [dm3] 3L_22848999_SNP [dm6]	A	G	2.936e^-4	0.852	INTERGENIC
2L	4744737	2L_4744737_SNP [dm3] 2L_4744737_SNP [dm6]	C	T	2.938e^-4	0.852	INTRON CG15630
3R	7048982	3R_7048982_SNP [dm3] 3R_11223260_SNP [dm6]	C	T	2.941e^-4	0.852	UTR_3_PRIME RpL3 UPSTREAM snoRNA:Psi28S-291 & 1 other DOWNSTREAM snoRNA:Me18S-C1096 & 2 others INTRON RpL3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	5617448	3L_5617448_SNP [dm3] 3L_5624348_SNP [dm6]	A	G	2.944e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	2094277	2L_2094277_SNP [dm3] 2L_2094277_SNP [dm6]	T	C	2.946e^-4	0.852	INTRON dpr3	TF binding site BDTNP1_TFBS_twi
2L	2332302	2L_2332302_SNP [dm3] 2L_2332302_SNP [dm6]	A	G	2.959e^-4	0.852	INTRON CG9967 & 1 other
2R	17250831	2R_17250831_SNP [dm3] 2R_21363326_SNP [dm6]	T	C	2.960e^-4	0.852	INTRON cv-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	20828621	2L_20828621_SNP [dm3] 2L_20828621_SNP [dm6]	A	G	2.964e^-4	0.852	UPSTREAM CG31673 DOWNSTREAM CG9331 INTERGENIC
2R	1751054	2R_1751054_DEL [dm3] 2R_5863549_DEL [dm6]	GACATACAATGG...	G	2.971e^-4	0.852	INTERGENIC
2L	12600320	2L_12600320_SNP [dm3] 2L_12600320_SNP [dm6]	A	T	2.976e^-4	0.852	INTRON nub
3R	16796317	3R_16796317_SNP [dm3] 3R_20970595_SNP [dm6]	C	T	2.978e^-4	0.852	INTRON Atpalpha
X	17963432	X_17963432_SNP [dm3] X_18069399_SNP [dm6]	C	G	2.983e^-4	0.852	SYNONYMOUS_CODING Dhc16F
2R	16062109	2R_16062109_SNP [dm3] 2R_20174604_SNP [dm6]	G	T	2.984e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	9060849	3R_9060849_SNP [dm3] 3R_13235127_SNP [dm6]	C	G	2.985e^-4	0.852	INTRON Ace
3R	22688749	3R_22688749_SNP [dm3] 3R_26863027_SNP [dm6]	T	C	2.987e^-4	0.852	UPSTREAM IntS12 & 1 other INTRON Lerp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	10836258	3R_10836258_SNP [dm3] 3R_15010536_SNP [dm6]	G	A	2.987e^-4	0.852	INTERGENIC
2R	19827402	2R_19827402_SNP [dm3] 2R_23939879_SNP [dm6]	T	C	2.988e^-4	0.852	UPSTREAM Tal & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	20349416	X_20349416_SNP [dm3] X_20478389_SNP [dm6]	C	T	2.995e^-4	0.852	INTRON RhoGAP19D
2L	13758476	2L_13758476_SNP [dm3] 2L_13758476_SNP [dm6]	C	T	2.997e^-4	0.852	INTRON TM9SF4
3R	15141936	3R_15141936_SNP [dm3] 3R_19316214_SNP [dm6]	C	A	3.003e^-4	0.852	INTRON Dl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	7490451	3R_7490451_DEL [dm3] 3R_11664729_DEL [dm6]	CAAGGAACTCTTTGTGTC...	C	3.003e^-4	0.852	INTRON CG42327	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5876508	3L_5876508_SNP [dm3] 3L_5883408_SNP [dm6]	C	T	3.005e^-4	0.852	SYNONYMOUS_CODING CG13287	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3003974	3L_3003974_SNP [dm3] 3L_3003974_SNP [dm6]	T	A	3.007e^-4	0.852	INTRON FMRFaR
X	10904696	X_10904696_SNP [dm3] X_11010663_SNP [dm6]	G	A	3.012e^-4	0.852	INTRON CG42339
3L	15155988	3L_15155988_SNP [dm3] 3L_15162888_SNP [dm6]	C	A	3.012e^-4	0.852	DOWNSTREAM CG6878 INTRON CG7011	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	10560649	2L_10560649_SNP [dm3] 2L_10560649_SNP [dm6]	T	C	3.023e^-4	0.852	INTRON Trim9
3L	329786	3L_329786_SNP [dm3] 3L_329786_SNP [dm6]	G	A	3.027e^-4	0.852	DOWNSTREAM mthl9 INTRON Ptpmeg	TF binding site BDTNP1_TFBS_dl
2R	16062085	2R_16062085_SNP [dm3] 2R_20174580_SNP [dm6]	T	C	3.041e^-4	0.852	INTERGENIC
X	3955297	X_3955297_SNP [dm3] X_4061264_SNP [dm6]	G	A	3.044e^-4	0.852	INTERGENIC
3L	9275512	3L_9275512_SNP [dm3] 3L_9282412_SNP [dm6]	A	T	3.058e^-4	0.852	INTRON GluRIB
2L	4588764	2L_4588764_SNP [dm3] 2L_4588764_SNP [dm6]	C	T	3.065e^-4	0.852	INTRON dp	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	2738000	2L_2738000_SNP [dm3] 2L_2738000_SNP [dm6]	T	C	3.069e^-4	0.852	DOWNSTREAM mir-4914 INTRON CG31689
3R	25529880	3R_25529880_SNP [dm3] 3R_29704158_SNP [dm6]	T	C	3.077e^-4	0.852	INTERGENIC
3R	7510477	3R_7510477_SNP [dm3] 3R_11684755_SNP [dm6]	T	A	3.080e^-4	0.852	UTR_3_PRIME CG6834 UPSTREAM CG6830
X	11564043	X_11564043_SNP [dm3] X_11670010_SNP [dm6]	A	T	3.085e^-4	0.852	INTRON Ptp10D
2L	3531994	2L_3531994_SNP [dm3] 2L_3531994_SNP [dm6]	C	T	3.089e^-4	0.852	SYNONYMOUS_CODING Che-13	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_sens
3L	7548835	3L_7548835_SNP [dm3] 3L_7555735_SNP [dm6]	G	A	3.092e^-4	0.852	DOWNSTREAM CG14837 INTERGENIC
2R	17272612	2R_17272612_SNP [dm3] 2R_21385107_SNP [dm6]	T	G	3.096e^-4	0.852	NON_SYNONYMOUS_CODING EfSec UPSTREAM CG10795	TF binding site mE1_TFBS_sens
3R	6991664	3R_6991664_SNP [dm3] 3R_11165942_SNP [dm6]	A	T	3.100e^-4	0.852	NON_SYNONYMOUS_CODING Ugt86Dg DOWNSTREAM Ugt86De
2L	9544826	2L_9544826_DEL [dm3] 2L_9544826_DEL [dm6]	TGGC	T	3.104e^-4	0.852	UTR_3_PRIME CG13113 UPSTREAM CG13114
3R	23113888	3R_23113888_SNP [dm3] 3R_27288166_SNP [dm6]	G	A	3.104e^-4	0.852	SYNONYMOUS_CODING bigmax UPSTREAM Hmu DOWNSTREAM CG3368	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	18611638	2R_18611638_SNP [dm3] 2R_22724133_SNP [dm6]	T	C	3.107e^-4	0.852	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	7867850	3R_7867850_SNP [dm3] 3R_12042128_SNP [dm6]	G	A	3.109e^-4	0.852	INTRON CG14736
2R	1373294	2R_1373294_SNP [dm3] 2R_5485789_SNP [dm6]	T	A	3.109e^-4	0.852	INTRON CG30440	transposable element FlyBase
3R	7041735	3R_7041735_SNP [dm3] 3R_11216013_SNP [dm6]	A	T	3.118e^-4	0.852	UPSTREAM CG4820 INTRON RpS25	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	1764880	3R_1764880_SNP [dm3] 3R_5939158_SNP [dm6]	G	A	3.119e^-4	0.852	INTRON CG34113
3R	16743792	3R_16743792_SNP [dm3] 3R_20918070_SNP [dm6]	G	T	3.122e^-4	0.852	INTRON CG31191 & 1 other	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	2889788	2L_2889788_SNP [dm3] 2L_2889788_SNP [dm6]	T	C	3.132e^-4	0.852	UTR_5_PRIME lilli UPSTREAM lilli INTRON lilli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	20425544	2R_20425544_SNP [dm3] 2R_24538021_SNP [dm6]	G	A	3.137e^-4	0.852	INTRON CG4622 & 1 other
3R	7049017	3R_7049017_SNP [dm3] 3R_11223295_SNP [dm6]	C	G	3.138e^-4	0.852	UTR_3_PRIME RpL3 UPSTREAM snoRNA:Psi28S-291 & 1 other DOWNSTREAM snoRNA:Me18S-C1096 & 2 others INTRON RpL3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	10560411	2L_10560411_SNP [dm3] 2L_10560411_SNP [dm6]	T	C	3.150e^-4	0.852	INTRON Trim9
X	5884337	X_5884337_SNP [dm3] X_5990304_SNP [dm6]	C	T	3.150e^-4	0.852	UTR_5_PRIME CG5966 INTRON CG5966
3R	7926420	3R_7926420_SNP [dm3] 3R_12100698_SNP [dm6]	G	A	3.152e^-4	0.852	INTRON dpr17
X	17388490	X_17388490_SNP [dm3] X_17494457_SNP [dm6]	G	T	3.155e^-4	0.852	INTRON CG43658
3L	12836960	3L_12836960_SNP [dm3] 3L_12843860_SNP [dm6]	C	A	3.171e^-4	0.852	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC
X	13608231	X_13608231_SNP [dm3] X_13714198_SNP [dm6]	T	C	3.178e^-4	0.852	UTR_3_PRIME NnaD INTRON CG9940 & 1 other	TF binding site BDTNP1_TFBS_dl
X	19667099	X_19667099_SNP [dm3] X_19773066_SNP [dm6]	T	C	3.180e^-4	0.852	INTRON vfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12848108	2R_12848108_SNP [dm3] 2R_16960603_SNP [dm6]	G	A	3.193e^-4	0.852	UPSTREAM CG9010 INTERGENIC
3L	4677373	3L_4677373_SNP [dm3] 3L_4677373_SNP [dm6]	C	T	3.194e^-4	0.852	UPSTREAM CG34266 INTRON axo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10704211	2L_10704211_SNP [dm3] 2L_10704211_SNP [dm6]	T	A	3.195e^-4	0.852	SYNONYMOUS_CODING CG6415 INTRON Lip2	TF binding site mE1_TFBS_chinmo
3R	24192572	3R_24192572_SNP [dm3] 3R_28366850_SNP [dm6]	T	A	3.197e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	6931688	3R_6931688_SNP [dm3] 3R_11105966_SNP [dm6]	C	A	3.205e^-4	0.852	INTERGENIC
X	18710587	X_18710587_SNP [dm3] X_18816554_SNP [dm6]	G	C	3.206e^-4	0.852	INTRON CG42450	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4375192	2L_4375192_SNP [dm3] 2L_4375192_SNP [dm6]	G	A	3.207e^-4	0.852	INTRON Traf4	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	24123756	3R_24123756_SNP [dm3] 3R_28298034_SNP [dm6]	G	A	3.212e^-4	0.852	INTERGENIC
3L	23116936	3L_23116936_SNP [dm3] 3L_23123836_SNP [dm6]	G	A	3.213e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad transposable element FlyBase
2L	6155306	2L_6155306_SNP [dm3] 2L_6155306_SNP [dm6]	C	A	3.217e^-4	0.852	UPSTREAM CG31639 INTERGENIC
X	19236873	X_19236873_SNP [dm3] X_19342840_SNP [dm6]	A	G	3.218e^-4	0.852	SPLICE_SITE_REGION nAChRalpha7 INTRON nAChRalpha7
2L	7064675	2L_7064675_SNP [dm3] 2L_7064675_SNP [dm6]	C	A	3.224e^-4	0.852	NON_SYNONYMOUS_CODING Nuf2 DOWNSTREAM Sem1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	10602051	2L_10602051_SNP [dm3] 2L_10602051_SNP [dm6]	A	C	3.232e^-4	0.852	INTRON Trim9
3R	6641078	3R_6641078_SNP [dm3] 3R_10815356_SNP [dm6]	G	T	3.234e^-4	0.852	UTR_5_PRIME CG4089 UPSTREAM CG14693
3R	24787842	3R_24787842_SNP [dm3] 3R_28962120_SNP [dm6]	T	A	3.239e^-4	0.852	INTRON CG14521
2L	4077601	2L_4077601_SNP [dm3] 2L_4077601_SNP [dm6]	A	G	3.249e^-4	0.852	INTRON ed
2L	12239741	2L_12239741_DEL [dm3] 2L_12239741_DEL [dm6]	CGGCAC	C	3.252e^-4	0.852	INTRON aret
2L	18270618	2L_18270618_SNP [dm3] 2L_18270618_SNP [dm6]	C	A	3.256e^-4	0.852	INTRON CG42750
3R	23055686	3R_23055686_SNP [dm3] 3R_27229964_SNP [dm6]	G	A	3.257e^-4	0.852	SYNONYMOUS_CODING CG31064 UPSTREAM CG42814 DOWNSTREAM CG31064	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18252881	X_18252881_DEL [dm3] X_18358848_DEL [dm6]	TATGT	T	3.268e^-4	0.852	UPSTREAM CG6106 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	1086910	3L_1086910_SNP [dm3] 3L_1086910_SNP [dm6]	T	C	3.286e^-4	0.852	INTRON bab1
3L	23117633	3L_23117633_SNP [dm3] 3L_23124533_SNP [dm6]	G	T	3.290e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_cad transposable element FlyBase
3L	16920456	3L_16920456_SNP [dm3] 3L_16927356_SNP [dm6]	A	G	3.301e^-4	0.852	UTR_5_PRIME CG13023
3R	7892456	3R_7892456_SNP [dm3] 3R_12066734_SNP [dm6]	T	C	3.301e^-4	0.852	INTERGENIC
3L	4099983	3L_4099983_SNP [dm3] 3L_4099983_SNP [dm6]	T	G	3.310e^-4	0.852	INTRON CG14995	TF binding site mE1_TFBS_inv
3R	23116647	3R_23116647_SNP [dm3] 3R_27290925_SNP [dm6]	C	T	3.310e^-4	0.852	NON_SYNONYMOUS_CODING Hmu DOWNSTREAM CG3348	TF binding site mE1_TFBS_cad
3R	17109464	3R_17109464_SNP [dm3] 3R_21283742_SNP [dm6]	C	A	3.320e^-4	0.852	INTRON SIFaR & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10307391	2R_10307391_SNP [dm3] 2R_14419886_SNP [dm6]	G	T	3.320e^-4	0.852	UPSTREAM CG17386 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	3259374	2L_3259374_SNP [dm3] 2L_3259374_SNP [dm6]	G	A	3.322e^-4	0.852	INTERGENIC
3L	10432389	3L_10432389_SNP [dm3] 3L_10439289_SNP [dm6]	A	G	3.323e^-4	0.852	INTERGENIC	transposable element FlyBase
3L	3107858	3L_3107858_DEL [dm3] 3L_3107858_DEL [dm6]	AAACTGGCATTTAAATC...	T	3.332e^-4	0.852	UPSTREAM Cht7 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	7048220	3R_7048220_SNP [dm3] 3R_11222498_SNP [dm6]	T	A	3.340e^-4	0.852	UPSTREAM CG6693 & 1 other DOWNSTREAM snoRNA:Me18S-C1096 INTRON RpL3 EXON CR31144	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	5884366	X_5884366_SNP [dm3] X_5990333_SNP [dm6]	T	C	3.348e^-4	0.852	UTR_5_PRIME CG5966 INTRON CG5966
2R	14598534	2R_14598534_SNP [dm3] 2R_18711029_SNP [dm6]	A	G	3.349e^-4	0.852	UPSTREAM pncr016:2R & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	7423015	3L_7423015_SNP [dm3] 3L_7429915_SNP [dm6]	T	C	3.350e^-4	0.852	INTRON CG42458	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	2541915	2L_2541915_SNP [dm3] 2L_2541915_SNP [dm6]	G	A	3.354e^-4	0.852	INTERGENIC
3R	10318488	3R_10318488_SNP [dm3] 3R_14492766_SNP [dm6]	A	T	3.356e^-4	0.852	INTERGENIC
2L	13259257	2L_13259257_SNP [dm3] 2L_13259257_SNP [dm6]	A	G	3.357e^-4	0.852	SYNONYMOUS_CODING CG31730 DOWNSTREAM CG31851
3R	15834136	3R_15834136_SNP [dm3] 3R_20008414_SNP [dm6]	C	T	3.364e^-4	0.852	UTR_5_PRIME Hs6st UPSTREAM MED25	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	8038734	3L_8038734_SNP [dm3] 3L_8045634_SNP [dm6]	C	G	3.377e^-4	0.852	INTRON nmo
3L	23116751	3L_23116751_SNP [dm3] 3L_23123651_SNP [dm6]	T	A	3.380e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_cad
X	11042303	X_11042303_DEL [dm3] X_11148270_DEL [dm6]	GTGGGCGGTGGCCGGG...	G	3.388e^-4	0.852	INTRON Ran	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	16140338	X_16140338_SNP [dm3] X_16246305_SNP [dm6]	T	C	3.390e^-4	0.852	INTERGENIC
3L	8264301	3L_8264301_SNP [dm3] 3L_8271201_SNP [dm6]	G	C	3.394e^-4	0.852	INTRON Dscam4
2L	2706915	2L_2706915_SNP [dm3] 2L_2706915_SNP [dm6]	A	G	3.402e^-4	0.852	INTRON CG31690
2R	1143992	2R_1143992_SNP [dm3] 2R_5256487_SNP [dm6]	T	C	3.403e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13346714	2L_13346714_SNP [dm3] 2L_13346714_SNP [dm6]	G	A	3.410e^-4	0.852	INTERGENIC
3L	5766459	3L_5766459_SNP [dm3] 3L_5773359_SNP [dm6]	A	C	3.413e^-4	0.852	SYNONYMOUS_CODING scny	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8029467	3L_8029467_SNP [dm3] 3L_8036367_SNP [dm6]	T	G	3.413e^-4	0.852	INTRON nmo	TF binding site BDTNP1_TFBS_twi
X	20349105	X_20349105_SNP [dm3] X_20478078_SNP [dm6]	A	T	3.426e^-4	0.852	NON_SYNONYMOUS_CODING RhoGAP19D
3R	16765174	3R_16765174_SNP [dm3] 3R_20939452_SNP [dm6]	G	T	3.429e^-4	0.852	INTRON CG31191
3R	8529026	3R_8529026_SNP [dm3] 3R_12703304_SNP [dm6]	G	A	3.429e^-4	0.852	INTRON Past1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14706086	3L_14706086_SNP [dm3] 3L_14712986_SNP [dm6]	C	G	3.433e^-4	0.852	INTRON ome
2R	9768138	2R_9768138_SNP [dm3] 2R_13880633_SNP [dm6]	C	T	3.434e^-4	0.852	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad
3L	8837322	3L_8837322_SNP [dm3] 3L_8844222_SNP [dm6]	C	T	3.437e^-4	0.852	INTRON dally
2L	7088807	2L_7088807_SNP [dm3] 2L_7088807_SNP [dm6]	G	T	3.441e^-4	0.852	INTERGENIC
3L	8029460	3L_8029460_SNP [dm3] 3L_8036360_SNP [dm6]	G	A	3.455e^-4	0.852	INTRON nmo	TF binding site BDTNP1_TFBS_twi
2L	7065340	2L_7065340_SNP [dm3] 2L_7065340_SNP [dm6]	G	A	3.461e^-4	0.852	SYNONYMOUS_CODING Nuf2 DOWNSTREAM Sem1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
2L	7065343	2L_7065343_SNP [dm3] 2L_7065343_SNP [dm6]	C	A	3.461e^-4	0.852	SYNONYMOUS_CODING Nuf2 DOWNSTREAM Sem1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
2R	16777147	2R_16777147_SNP [dm3] 2R_20889642_SNP [dm6]	A	C	3.466e^-4	0.852	INTRON otp	TF binding site mE1_TFBS_HSA
2L	19732070	2L_19732070_SNP [dm3] 2L_19732070_SNP [dm6]	T	A	3.471e^-4	0.852	DOWNSTREAM CG10462 & 1 other INTERGENIC
3L	4887067	3L_4887067_SNP [dm3] 3L_4887067_SNP [dm6]	A	T	3.476e^-4	0.852	INTRON CG17150
2L	13041599	2L_13041599_SNP [dm3] 2L_13041599_SNP [dm6]	T	C	3.478e^-4	0.852	INTRON CG9932
X	20420301	X_20420301_SNP [dm3] X_20549274_SNP [dm6]	T	G	3.480e^-4	0.852	INTRON RunxB
3L	3796478	3L_3796478_SNP [dm3] 3L_3796478_SNP [dm6]	C	A	3.483e^-4	0.852	INTRON CG32264
2L	6726827	2L_6726827_SNP [dm3] 2L_6726827_SNP [dm6]	T	C	3.489e^-4	0.852	INTRON Liprin-alpha
2R	1155218	2R_1155218_SNP [dm3] 2R_5267713_SNP [dm6]	G	T	3.499e^-4	0.852	INTRON d4
3R	7890696	3R_7890696_INS [dm3] 3R_12064974_INS [dm6]	A	AAA	3.502e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2157563	3L_2157563_SNP [dm3] 3L_2157563_SNP [dm6]	T	C	3.506e^-4	0.852	SYNONYMOUS_CODING CG15822	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	23076052	3L_23076052_SNP [dm3] 3L_23082952_SNP [dm6]	C	G	3.507e^-4	0.852	INTERGENIC
X	11357097	X_11357097_SNP [dm3] X_11463064_SNP [dm6]	C	T	3.508e^-4	0.852	INTRON CG43155
3R	25175439	3R_25175439_SNP [dm3] 3R_29349717_SNP [dm6]	G	A	3.511e^-4	0.852	INTERGENIC
3L	13302321	3L_13302321_INS [dm3] 3L_13309221_INS [dm6]	A	TG	3.521e^-4	0.852	INTERGENIC
3R	10264813	3R_10264813_SNP [dm3] 3R_14439091_SNP [dm6]	A	G	3.527e^-4	0.852	INTRON cv-c
3R	7892527	3R_7892527_SNP [dm3] 3R_12066805_SNP [dm6]	C	A	3.534e^-4	0.852	INTERGENIC
2L	11644218	2L_11644218_SNP [dm3] 2L_11644218_SNP [dm6]	A	G	3.535e^-4	0.852	DOWNSTREAM CG6614 INTERGENIC
3L	8701326	3L_8701326_DEL [dm3] 3L_8708226_DEL [dm6]	CTCCC	C	3.537e^-4	0.852	INTERGENIC	regulatory region REDfly_CRMs
2L	18538838	2L_18538838_SNP [dm3] 2L_18538838_SNP [dm6]	T	C	3.542e^-4	0.852	INTRON Pde11
2R	17900948	2R_17900948_SNP [dm3] 2R_22013443_SNP [dm6]	G	A	3.547e^-4	0.852	INTRON CG34370
X	13966833	X_13966833_SNP [dm3] X_14072800_SNP [dm6]	T	C	3.549e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2R	14641630	2R_14641630_SNP [dm3] 2R_18754125_SNP [dm6]	G	T	3.559e^-4	0.852	UTR_3_PRIME Hs3st-A UPSTREAM Cyp12b2
2L	8053052	2L_8053052_SNP [dm3] 2L_8053052_SNP [dm6]	G	A	3.562e^-4	0.852	UTR_3_PRIME CG7466
3R	21976925	3R_21976925_SNP [dm3] 3R_26151203_SNP [dm6]	C	T	3.564e^-4	0.852	INTERGENIC
2R	14641372	2R_14641372_SNP [dm3] 2R_18753867_SNP [dm6]	T	A	3.580e^-4	0.852	UTR_3_PRIME Hs3st-A
2R	3954862	2R_3954862_SNP [dm3] 2R_8067357_SNP [dm6]	C	T	3.582e^-4	0.852	NON_SYNONYMOUS_CODING CG17977 UPSTREAM lig	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
X	9287927	X_9287927_SNP [dm3] X_9393894_SNP [dm6]	T	C	3.586e^-4	0.852	INTRON mgl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	3592239	3L_3592239_SNP [dm3] 3L_3592239_SNP [dm6]	A	T	3.586e^-4	0.852	INTRON Eip63E	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	25435703	3R_25435703_SNP [dm3] 3R_29609981_SNP [dm6]	C	T	3.589e^-4	0.852	INTRON alph	TF binding site mE1_TFBS_chinmo
2R	11677734	2R_11677734_SNP [dm3] 2R_15790229_SNP [dm6]	T	C	3.600e^-4	0.852	INTRON Zasp52	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	16342723	2R_16342723_SNP [dm3] 2R_20455218_SNP [dm6]	G	A	3.600e^-4	0.852	INTRON CG12484
2L	10562646	2L_10562646_SNP [dm3] 2L_10562646_SNP [dm6]	T	C	3.602e^-4	0.852	INTRON Trim9
3R	16075195	3R_16075195_SNP [dm3] 3R_20249473_SNP [dm6]	G	A	3.603e^-4	0.852	INTERGENIC
3L	17458338	3L_17458338_SNP [dm3] 3L_17465238_SNP [dm6]	C	G	3.607e^-4	0.852	UPSTREAM CG7603 INTERGENIC
X	15180793	X_15180793_SNP [dm3] X_15286760_SNP [dm6]	G	A	3.608e^-4	0.852	INTERGENIC
3R	10255793	3R_10255793_SNP [dm3] 3R_14430071_SNP [dm6]	C	A	3.620e^-4	0.852	INTRON cv-c	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10012033	3L_10012033_SNP [dm3] 3L_10018933_SNP [dm6]	C	G	3.622e^-4	0.852	INTRON dpr6
2L	3523992	2L_3523992_SNP [dm3] 2L_3523992_SNP [dm6]	C	A	3.633e^-4	0.852	UTR_5_PRIME Sr-CIV
3R	3286425	3R_3286425_SNP [dm3] 3R_7460703_SNP [dm6]	G	C	3.638e^-4	0.852	INTERGENIC
2L	2703029	2L_2703029_DEL [dm3] 2L_2703029_DEL [dm6]	CGGCCATTCATCCGACCCAT...	C	3.649e^-4	0.852	INTRON CG31690
3R	20672365	3R_20672365_SNP [dm3] 3R_24846643_SNP [dm6]	A	G	3.650e^-4	0.852	UPSTREAM Esp INTRON Esp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5796764	2L_5796764_SNP [dm3] 2L_5796764_SNP [dm6]	A	G	3.665e^-4	0.852	INTRON CG9171
2L	11860036	2L_11860036_SNP [dm3] 2L_11860036_SNP [dm6]	T	C	3.666e^-4	0.852	INTRON Pde1c
3L	12057474	3L_12057474_SNP [dm3] 3L_12064374_SNP [dm6]	G	T	3.667e^-4	0.852	INTRON rols
3L	17815597	3L_17815597_SNP [dm3] 3L_17822497_SNP [dm6]	T	A	3.668e^-4	0.852	UPSTREAM Grd INTRON Ir75c
X	10082681	X_10082681_SNP [dm3] X_10188648_SNP [dm6]	G	A	3.688e^-4	0.852	SYNONYMOUS_CODING CG43902 INTRON CR44894
3R	10265603	3R_10265603_SNP [dm3] 3R_14439881_SNP [dm6]	C	A	3.690e^-4	0.852	INTRON cv-c	TF binding site mE1_TFBS_sbb
2R	16062108	2R_16062108_SNP [dm3] 2R_20174603_SNP [dm6]	T	A	3.692e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	5601404	3L_5601404_SNP [dm3] 3L_5608304_SNP [dm6]	A	G	3.693e^-4	0.852	UPSTREAM Eaf6 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
3L	5601486	3L_5601486_SNP [dm3] 3L_5608386_SNP [dm6]	T	A	3.693e^-4	0.852	UPSTREAM Eaf6 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
2R	17620555	2R_17620555_SNP [dm3] 2R_21733050_SNP [dm6]	C	T	3.693e^-4	0.852	INTERGENIC
3R	10268364	3R_10268364_SNP [dm3] 3R_14442642_SNP [dm6]	G	C	3.694e^-4	0.852	INTRON cv-c
X	13499132	X_13499132_INS [dm3] X_13605099_INS [dm6]	C	CCAACAA	3.696e^-4	0.852	UPSTREAM CG11178 EXON CR44654	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
3L	8029458	3L_8029458_SNP [dm3] 3L_8036358_SNP [dm6]	C	G	3.701e^-4	0.852	INTRON nmo	TF binding site BDTNP1_TFBS_twi
3L	15831780	3L_15831780_SNP [dm3] 3L_15838680_SNP [dm6]	A	G	3.710e^-4	0.852	NON_SYNONYMOUS_CODING CG32150 UTR_3_PRIME CG32150
2R	4500013	2R_4500013_SNP [dm3] 2R_8612508_SNP [dm6]	G	A	3.710e^-4	0.852	DOWNSTREAM rgr INTRON CG8642
3L	7513388	3L_7513388_SNP [dm3] 3L_7520288_SNP [dm6]	T	C	3.720e^-4	0.852	INTRON ltl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	1024682	3L_1024682_SNP [dm3] 3L_1024682_SNP [dm6]	T	C	3.725e^-4	0.852	SYNONYMOUS_CODING trio	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	10563088	2L_10563088_SNP [dm3] 2L_10563088_SNP [dm6]	T	A	3.726e^-4	0.852	INTRON Trim9
3L	16917931	3L_16917931_SNP [dm3] 3L_16924831_SNP [dm6]	G	A	3.729e^-4	0.852	SYNONYMOUS_CODING CG13023 DOWNSTREAM CG13028	TF binding site mE1_TFBS_cad
2R	8370724	2R_8370724_SNP [dm3] 2R_12483219_SNP [dm6]	A	T	3.729e^-4	0.852	INTRON Dh44-R2
2R	11677721	2R_11677721_SNP [dm3] 2R_15790216_SNP [dm6]	C	T	3.730e^-4	0.852	INTRON Zasp52	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	24359067	3R_24359067_SNP [dm3] 3R_28533345_SNP [dm6]	C	T	3.733e^-4	0.852	INTRON Ppn	TF binding site BDTNP1_TFBS_twi
2R	19241623	2R_19241623_DEL [dm3] 2R_23354100_DEL [dm6]	AAAAGTCA	A	3.737e^-4	0.852	UPSTREAM CG30409 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	19241632	2R_19241632_DEL [dm3] 2R_23354109_DEL [dm6]	TTTTGAA	T	3.737e^-4	0.852	UPSTREAM CG30409 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	16061989	2R_16061989_SNP [dm3] 2R_20174484_SNP [dm6]	A	G	3.740e^-4	0.852	INTERGENIC
2R	6679818	2R_6679818_SNP [dm3] 2R_10792313_SNP [dm6]	A	G	3.741e^-4	0.852	INTRON CG33144 & 1 other
X	17103934	X_17103934_SNP [dm3] X_17209901_SNP [dm6]	A	T	3.745e^-4	0.852	NON_SYNONYMOUS_CODING CG12995 DOWNSTREAM CG32563	TF binding site BDTNP1_TFBS_sna
3L	8347273	3L_8347273_SNP [dm3] 3L_8354173_SNP [dm6]	A	T	3.754e^-4	0.852	SYNONYMOUS_CODING CG17352 UTR_3_PRIME CG17352 DOWNSTREAM mir-4913	TF binding site mE1_TFBS_cad
2R	19241552	2R_19241552_SNP [dm3] 2R_23354029_SNP [dm6]	G	C	3.762e^-4	0.852	UPSTREAM CG30409 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	6945717	3L_6945717_SNP [dm3] 3L_6952617_SNP [dm6]	A	T	3.766e^-4	0.852	UTR_3_PRIME CG10077 INTRON CG10077
X	10836529	X_10836529_SNP [dm3] X_10942496_SNP [dm6]	G	A	3.770e^-4	0.852	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo
3R	8099075	3R_8099075_SNP [dm3] 3R_12273353_SNP [dm6]	T	A	3.770e^-4	0.852	SYNONYMOUS_CODING Sfp87B INTRON svp
X	15993625	X_15993625_SNP [dm3] X_16099592_SNP [dm6]	G	A	3.784e^-4	0.852	SYNONYMOUS_CODING CG42353 UTR_5_PRIME CG42354	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11371068	2L_11371068_SNP [dm3] 2L_11371068_SNP [dm6]	G	T	3.785e^-4	0.852	INTRON salr
3R	14254360	3R_14254360_SNP [dm3] 3R_18428638_SNP [dm6]	T	G	3.792e^-4	0.852	UTR_3_PRIME fru INTRON fru
2R	17992513	2R_17992513_SNP [dm3] 2R_22105008_SNP [dm6]	G	T	3.794e^-4	0.852	INTRON CG6613
3L	10533620	3L_10533620_SNP [dm3] 3L_10540520_SNP [dm6]	T	A	3.797e^-4	0.852	INTRON A2bp1
2R	19241664	2R_19241664_SNP [dm3] 2R_23354141_SNP [dm6]	T	C	3.798e^-4	0.852	UPSTREAM CG30409 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10875627	3R_10875627_SNP [dm3] 3R_15049905_SNP [dm6]	A	T	3.798e^-4	0.852	INTERGENIC
2L	10274659	2L_10274659_SNP [dm3] 2L_10274659_SNP [dm6]	T	G	3.815e^-4	0.852	NON_SYNONYMOUS_CODING Utx
2L	14011776	2L_14011776_SNP [dm3] 2L_14011776_SNP [dm6]	A	G	3.817e^-4	0.852	INTERGENIC
2L	4371859	2L_4371859_SNP [dm3] 2L_4371859_SNP [dm6]	C	G	3.819e^-4	0.852	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
X	3290900	X_3290900_SNP [dm3] X_3396867_SNP [dm6]	G	A	3.827e^-4	0.852	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	12692201	X_12692201_SNP [dm3] X_12798168_SNP [dm6]	C	T	3.833e^-4	0.852	INTRON Pde9
3L	4804291	3L_4804291_SNP [dm3] 3L_4804291_SNP [dm6]	T	C	3.839e^-4	0.852	SYNONYMOUS_CODING CG7509
2R	11520313	2R_11520313_SNP [dm3] 2R_15632808_SNP [dm6]	A	G	3.844e^-4	0.852	INTRON CG42524
X	11122316	X_11122316_SNP [dm3] X_11228283_SNP [dm6]	C	T	3.850e^-4	0.852	INTRON CG44422
3L	14388981	3L_14388981_SNP [dm3] 3L_14395881_SNP [dm6]	A	T	3.851e^-4	0.852	INTERGENIC
2R	3914443	2R_3914443_SNP [dm3] 2R_8026938_SNP [dm6]	T	G	3.860e^-4	0.852	DOWNSTREAM CR45267 INTERGENIC
2L	4609381	2L_4609381_SNP [dm3] 2L_4609381_SNP [dm6]	G	T	3.862e^-4	0.852	INTRON dp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10870113	2L_10870113_SNP [dm3] 2L_10870113_SNP [dm6]	A	T	3.867e^-4	0.852	UPSTREAM CG12517 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	13424289	2L_13424289_SNP [dm3] 2L_13424289_SNP [dm6]	A	T	3.877e^-4	0.852	INTRON CG42784
3R	12244901	3R_12244901_SNP [dm3] 3R_16419179_SNP [dm6]	G	A	3.878e^-4	0.852	INTERGENIC	regulatory region REDfly_CRMs
2R	6667698	2R_6667698_SNP [dm3] 2R_10780193_SNP [dm6]	G	A	3.885e^-4	0.852	INTRON CG33144
2R	16062084	2R_16062084_SNP [dm3] 2R_20174579_SNP [dm6]	A	G	3.888e^-4	0.852	INTERGENIC
2L	5796753	2L_5796753_SNP [dm3] 2L_5796753_SNP [dm6]	A	G	3.894e^-4	0.852	INTRON CG9171
2L	7768152	2L_7768152_SNP [dm3] 2L_7768152_SNP [dm6]	T	A	3.896e^-4	0.852	INTRON CG7191
X	22397328	X_22397328_SNP [dm3] X_22995492_SNP [dm6]	G	T	3.896e^-4	0.852	NON_SYNONYMOUS_CODING stnA UTR_5_PRIME stnB
2L	3271765	2L_3271765_SNP [dm3] 2L_3271765_SNP [dm6]	C	A	3.897e^-4	0.852	UTR_3_PRIME CG3347
3L	23118334	3L_23118334_DEL [dm3] 3L_23125234_DEL [dm6]	TA	T	3.902e^-4	0.852	UPSTREAM CG33217 INTERGENIC	transposable element FlyBase
3L	12382238	3L_12382238_SNP [dm3] 3L_12389138_SNP [dm6]	C	G	3.909e^-4	0.852	INTRON Ncc69
2R	3553888	2R_3553888_SNP [dm3] 2R_7666383_SNP [dm6]	A	G	3.913e^-4	0.852	SYNONYMOUS_CODING CG2064 DOWNSTREAM CG12042	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12385319	2L_12385319_SNP [dm3] 2L_12385319_SNP [dm6]	G	C	3.916e^-4	0.852	INTRON bru-2
3L	5766048	3L_5766048_SNP [dm3] 3L_5772948_SNP [dm6]	A	C	3.917e^-4	0.852	SYNONYMOUS_CODING scny	TF binding site mE1_TFBS_chinmo
X	15400857	X_15400857_SNP [dm3] X_15506824_SNP [dm6]	G	A	3.920e^-4	0.852	INTRON Gmap	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26006167	3R_26006167_SNP [dm3] 3R_30180445_SNP [dm6]	A	C	3.922e^-4	0.852	SYNONYMOUS_CODING Bet5 DOWNSTREAM CG15530	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
X	21091362	X_21091362_SNP [dm3] X_21220335_SNP [dm6]	C	T	3.925e^-4	0.852	INTRON CG32521
3R	4395896	3R_4395896_SNP [dm3] 3R_8570174_SNP [dm6]	G	A	3.928e^-4	0.852	DOWNSTREAM Cenp-C INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
X	15855772	X_15855772_SNP [dm3] X_15961739_SNP [dm6]	C	A	3.937e^-4	0.852	INTRON mmd
3L	20523947	3L_20523947_SNP [dm3] 3L_20530847_SNP [dm6]	C	T	3.937e^-4	0.852	INTRON Rcd2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19667113	X_19667113_SNP [dm3] X_19773080_SNP [dm6]	A	C	3.938e^-4	0.852	INTRON vfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9809744	3L_9809744_SNP [dm3] 3L_9816644_SNP [dm6]	T	A	3.954e^-4	0.852	INTRON CG43897
3R	7093401	3R_7093401_SNP [dm3] 3R_11267679_SNP [dm6]	T	C	3.962e^-4	0.852	INTERGENIC
3L	12893221	3L_12893221_SNP [dm3] 3L_12900121_SNP [dm6]	T	C	3.969e^-4	0.852	INTERGENIC
X	18486217	X_18486217_DEL [dm3] X_18592184_DEL [dm6]	ATA	A	3.974e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4381817	2L_4381817_SNP [dm3] 2L_4381817_SNP [dm6]	T	A	3.976e^-4	0.852	NON_SYNONYMOUS_CODING CG17612	TF binding site mE1_TFBS_sens
3L	6630087	3L_6630087_SNP [dm3] 3L_6636987_SNP [dm6]	C	T	3.991e^-4	0.852	INTERGENIC
2L	20880911	2L_20880911_SNP [dm3] 2L_20880911_SNP [dm6]	C	A	3.998e^-4	0.852	INTRON sky & 1 other
X	4331654	X_4331654_SNP [dm3] X_4437621_SNP [dm6]	G	A	4.002e^-4	0.852	INTRON CR32773 & 1 other
2R	11681040	2R_11681040_SNP [dm3] 2R_15793535_SNP [dm6]	A	G	4.009e^-4	0.852	UPSTREAM tun INTRON Zasp52	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20880559	3L_20880559_SNP [dm3] 3L_20887459_SNP [dm6]	A	G	4.012e^-4	0.852	EXON CR44686	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	16405353	3R_16405353_SNP [dm3] 3R_20579631_SNP [dm6]	G	A	4.020e^-4	0.852	UTR_5_PRIME EloB UPSTREAM Srp14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
3R	15833423	3R_15833423_SNP [dm3] 3R_20007701_SNP [dm6]	A	G	4.020e^-4	0.852	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	26313823	3R_26313823_SNP [dm3] 3R_30488101_SNP [dm6]	T	C	4.021e^-4	0.852	UPSTREAM Jon99Fii & 1 other INTERGENIC
3R	10836334	3R_10836334_SNP [dm3] 3R_15010612_SNP [dm6]	A	G	4.030e^-4	0.852	INTERGENIC
3R	20978157	3R_20978157_SNP [dm3] 3R_25152435_SNP [dm6]	T	G	4.031e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4374438	2L_4374438_SNP [dm3] 2L_4374438_SNP [dm6]	T	C	4.032e^-4	0.852	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	4804267	3L_4804267_SNP [dm3] 3L_4804267_SNP [dm6]	G	A	4.040e^-4	0.852	SYNONYMOUS_CODING CG7509
2L	3241581	2L_3241581_SNP [dm3] 2L_3241581_SNP [dm6]	T	G	4.042e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	8811770	3L_8811770_SNP [dm3] 3L_8818670_SNP [dm6]	C	A	4.045e^-4	0.852	INTERGENIC
X	9570320	X_9570320_SNP [dm3] X_9676287_SNP [dm6]	T	C	4.048e^-4	0.852	INTRON nej
2R	11525199	2R_11525199_SNP [dm3] 2R_15637694_SNP [dm6]	T	C	4.048e^-4	0.852	INTRON CG42524
3R	24085271	3R_24085271_SNP [dm3] 3R_28259549_SNP [dm6]	C	G	4.056e^-4	0.852	INTERGENIC
X	22407641	X_22407641_SNP [dm3] X_23005805_SNP [dm6]	C	T	4.058e^-4	0.852	INTERGENIC	transposable element FlyBase
3L	15829542	3L_15829542_SNP [dm3] 3L_15836442_SNP [dm6]	G	C	4.059e^-4	0.852	INTRON CG15715	TF binding site BDTNP1_TFBS_dl
X	18717955	X_18717955_INS [dm3] X_18823922_INS [dm6]	T	TAAAATATT	4.062e^-4	0.852	INTRON CG42450
3R	20994092	3R_20994092_SNP [dm3] 3R_25168370_SNP [dm6]	A	T	4.063e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3R	9257560	3R_9257560_SNP [dm3] 3R_13431838_SNP [dm6]	A	T	4.076e^-4	0.852	INTRON yrt
2L	5955905	2L_5955905_SNP [dm3] 2L_5955905_SNP [dm6]	G	A	4.079e^-4	0.852	SYNONYMOUS_CODING CG13999 DOWNSTREAM CG9044 & 1 other
3L	9300361	3L_9300361_SNP [dm3] 3L_9307261_SNP [dm6]	T	C	4.080e^-4	0.852	INTERGENIC
3R	8346633	3R_8346633_SNP [dm3] 3R_12520911_SNP [dm6]	G	A	4.080e^-4	0.852	INTRON Octbeta3R
2R	10459574	2R_10459574_SNP [dm3] 2R_14572069_SNP [dm6]	C	T	4.089e^-4	0.852	SYNONYMOUS_CODING LamC INTRON ttv	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	17458710	3L_17458710_SNP [dm3] 3L_17465610_SNP [dm6]	A	G	4.091e^-4	0.852	UPSTREAM CG7603 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13605756	3R_13605756_SNP [dm3] 3R_17780034_SNP [dm6]	A	G	4.092e^-4	0.852	SYNONYMOUS_CODING CG43102 UTR_5_PRIME CG43102	TF binding site mE1_TFBS_chinmo
3R	5129987	3R_5129987_SNP [dm3] 3R_9304265_SNP [dm6]	C	A	4.093e^-4	0.852	INTRON CG8861
3L	23899141	3L_23899141_SNP [dm3] 3L_23906041_SNP [dm6]	T	A	4.094e^-4	0.852	INTRON CG40470
2R	18085049	2R_18085049_SNP [dm3] 2R_22197544_SNP [dm6]	A	G	4.094e^-4	0.852	UPSTREAM snoRNA:Or-CD1 INTRON Swim	TF binding site BDTNP1_TFBS_dl
X	2196540	X_2196540_SNP [dm3] X_2302507_SNP [dm6]	T	A	4.094e^-4	0.852	INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3R	7047743	3R_7047743_SNP [dm3] 3R_11222021_SNP [dm6]	T	G	4.102e^-4	0.852	UPSTREAM snoRNA:Me18S-C1096 & 2 others DOWNSTREAM CR31144 INTRON RpL3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA
2L	8548569	2L_8548569_SNP [dm3] 2L_8548569_SNP [dm6]	A	G	4.103e^-4	0.852	INTRON Sema-1a
2R	3556580	2R_3556580_SNP [dm3] 2R_7669075_SNP [dm6]	C	T	4.113e^-4	0.852	UPSTREAM CG12042 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
3R	994734	3R_994734_SNP [dm3] 3R_5169012_SNP [dm6]	T	C	4.113e^-4	0.852	INTRON dpr16	transposable element FlyBase
X	5749545	X_5749545_SNP [dm3] X_5855512_SNP [dm6]	T	A	4.123e^-4	0.852	INTERGENIC
2R	12331701	2R_12331701_SNP [dm3] 2R_16444196_SNP [dm6]	G	A	4.132e^-4	0.852	INTRON CG4409
2L	13265740	2L_13265740_SNP [dm3] 2L_13265740_SNP [dm6]	C	T	4.134e^-4	0.852	INTRON CG44085 & 1 other	TF binding site mE1_TFBS_cad
3R	7048485	3R_7048485_SNP [dm3] 3R_11222763_SNP [dm6]	T	C	4.136e^-4	0.852	SYNONYMOUS_CODING RpL3 UPSTREAM snoRNA:Me18S-A425 & 1 other DOWNSTREAM snoRNA:Me18S-C1096 INTRON RpL3 EXON CR31144	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	26979291	3R_26979291_SNP [dm3] 3R_31153569_SNP [dm6]	G	A	4.138e^-4	0.852	INTRON Gycbeta100B
3R	7867870	3R_7867870_SNP [dm3] 3R_12042148_SNP [dm6]	A	T	4.140e^-4	0.852	INTRON CG14736
3R	10017036	3R_10017036_SNP [dm3] 3R_14191314_SNP [dm6]	A	G	4.148e^-4	0.852	INTRON Dop1R1
X	10500322	X_10500322_DEL [dm3] X_10606289_DEL [dm6]	AGCAAGTTTTCGAATTTTCA...	A	4.148e^-4	0.852	INTRON CG43347
2L	5903746	2L_5903746_SNP [dm3] 2L_5903746_SNP [dm6]	G	A	4.159e^-4	0.852	SYNONYMOUS_CODING CG9021	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	23085038	3L_23085038_SNP [dm3] 3L_23091938_SNP [dm6]	T	C	4.162e^-4	0.852	INTERGENIC
X	20471498	X_20471498_SNP [dm3] X_20600471_SNP [dm6]	T	C	4.171e^-4	0.852	INTRON RunxA
3R	24231292	3R_24231292_SNP [dm3] 3R_28405570_SNP [dm6]	C	T	4.172e^-4	0.852	INTERGENIC
3R	11587835	3R_11587835_SNP [dm3] 3R_15762113_SNP [dm6]	C	A	4.174e^-4	0.852	INTERGENIC
2R	16243924	2R_16243924_SNP [dm3] 2R_20356419_SNP [dm6]	G	C	4.185e^-4	0.852	INTERGENIC
2L	12181195	2L_12181195_SNP [dm3] 2L_12181195_SNP [dm6]	G	A	4.187e^-4	0.852	INTRON aret
X	12869935	X_12869935_SNP [dm3] X_12975902_SNP [dm6]	A	G	4.188e^-4	0.852	SYNONYMOUS_CODING CG12716	TF binding site mE1_TFBS_inv
3R	7904796	3R_7904796_SNP [dm3] 3R_12079074_SNP [dm6]	A	G	4.192e^-4	0.852	INTRON CG14741	TF binding site mE1_TFBS_Trl
3L	5601405	3L_5601405_SNP [dm3] 3L_5608305_SNP [dm6]	A	T	4.194e^-4	0.852	UPSTREAM Eaf6 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
X	5367310	X_5367310_SNP [dm3] X_5473277_SNP [dm6]	T	G	4.197e^-4	0.852	INTRON SPR
3R	16795723	3R_16795723_SNP [dm3] 3R_20970001_SNP [dm6]	A	G	4.197e^-4	0.852	INTRON Atpalpha
3R	11724757	3R_11724757_SNP [dm3] 3R_15899035_SNP [dm6]	T	C	4.199e^-4	0.852	INTRON glob1
3R	16912435	3R_16912435_SNP [dm3] 3R_21086713_SNP [dm6]	C	T	4.202e^-4	0.852	SYNONYMOUS_CODING RhoGAP93B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10499208	3L_10499208_SNP [dm3] 3L_10506108_SNP [dm6]	T	C	4.204e^-4	0.852	UTR_5_PRIME A2bp1
3R	9263064	3R_9263064_SNP [dm3] 3R_13437342_SNP [dm6]	A	G	4.208e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	18975422	X_18975422_SNP [dm3] X_19081389_SNP [dm6]	T	C	4.212e^-4	0.852	UPSTREAM CG14191 INTERGENIC
2R	17941819	2R_17941819_SNP [dm3] 2R_22054314_SNP [dm6]	T	G	4.213e^-4	0.852	INTERGENIC
2L	4371729	2L_4371729_SNP [dm3] 2L_4371729_SNP [dm6]	G	A	4.221e^-4	0.852	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2L	3485797	2L_3485797_SNP [dm3] 2L_3485797_SNP [dm6]	T	A	4.228e^-4	0.852	INTRON CG15414
3R	8901716	3R_8901716_INS [dm3] 3R_13075994_INS [dm6]	T	TT	4.233e^-4	0.852	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7888658	2L_7888658_SNP [dm3] 2L_7888658_SNP [dm6]	C	A	4.233e^-4	0.852	NON_SYNONYMOUS_CODING Spn28Da DOWNSTREAM Spn28Db	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	23848482	3L_23848482_SNP [dm3] 3L_23855382_SNP [dm6]	G	T	4.234e^-4	0.852	INTRON CG40470
X	15201054	X_15201054_SNP [dm3] X_15307021_SNP [dm6]	A	G	4.235e^-4	0.852	INTRON gce	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	9287938	X_9287938_SNP [dm3] X_9393905_SNP [dm6]	C	T	4.240e^-4	0.852	INTRON mgl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	10833806	X_10833806_SNP [dm3] X_10939773_SNP [dm6]	G	C	4.244e^-4	0.852	INTRON Myo10A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5080522	3R_5080522_SNP [dm3] 3R_9254800_SNP [dm6]	T	A	4.252e^-4	0.852	UPSTREAM CG16734 DOWNSTREAM CR16735 INTERGENIC
2R	12139951	2R_12139951_DEL [dm3] 2R_16252446_DEL [dm6]	TAGACGAC	T	4.265e^-4	0.852	INTRON CngA
2L	3241617	2L_3241617_SNP [dm3] 2L_3241617_SNP [dm6]	G	A	4.270e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	3539955	3L_3539955_SNP [dm3] 3L_3539955_SNP [dm6]	C	G	4.275e^-4	0.852	INTRON Eip63E
3R	20571989	3R_20571989_SNP [dm3] 3R_24746267_SNP [dm6]	C	G	4.278e^-4	0.852	SYNONYMOUS_CODING tok	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	18717963	X_18717963_DEL [dm3] X_18823930_DEL [dm6]	TT	T	4.287e^-4	0.852	INTRON CG42450
2R	17546768	2R_17546768_SNP [dm3] 2R_21659263_SNP [dm6]	T	C	4.298e^-4	0.852	SYNONYMOUS_CODING Rae1 DOWNSTREAM CG10320	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	15057869	3R_15057869_SNP [dm3] 3R_19232147_SNP [dm6]	C	G	4.298e^-4	0.852	SYNONYMOUS_CODING unc79
3R	21990484	3R_21990484_DEL [dm3] 3R_26164762_DEL [dm6]	GTGAA	G	4.309e^-4	0.852	INTERGENIC
3R	23514699	3R_23514699_SNP [dm3] 3R_27688977_SNP [dm6]	G	C	4.315e^-4	0.852	UPSTREAM CG31055 INTRON CG12880	TF binding site mE1_TFBS_chinmo
3R	5097536	3R_5097536_SNP [dm3] 3R_9271814_SNP [dm6]	G	A	4.315e^-4	0.852	INTERGENIC
2R	12343588	2R_12343588_SNP [dm3] 2R_16456083_SNP [dm6]	G	A	4.316e^-4	0.852	INTERGENIC
2R	10868148	2R_10868148_SNP [dm3] 2R_14980643_SNP [dm6]	A	T	4.320e^-4	0.852	UTR_3_PRIME ckn UPSTREAM pcs DOWNSTREAM ckn	TF binding site BDTNP1_TFBS_dl
3L	8876900	3L_8876900_SNP [dm3] 3L_8883800_SNP [dm6]	C	G	4.325e^-4	0.852	INTRON dally
3R	11587839	3R_11587839_INS [dm3] 3R_15762117_INS [dm6]	A	GCAAACCACAAC...	4.330e^-4	0.852	UPSTREAM CG12784 INTERGENIC
2L	3164243	2L_3164243_SNP [dm3] 2L_3164243_SNP [dm6]	T	A	4.332e^-4	0.852	DOWNSTREAM CR31953 INTRON Hydr2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	10202348	3R_10202348_SNP [dm3] 3R_14376626_SNP [dm6]	A	T	4.340e^-4	0.852	EXON CR44943	TF binding site BDTNP1_TFBS_dl
3L	3794274	3L_3794274_DEL [dm3] 3L_3794274_DEL [dm6]	AGACAAGCA	A	4.350e^-4	0.852	INTRON CG32264
3L	16234689	3L_16234689_SNP [dm3] 3L_16241589_SNP [dm6]	A	G	4.352e^-4	0.852	INTERGENIC
3R	23221425	3R_23221425_SNP [dm3] 3R_27395703_SNP [dm6]	T	G	4.353e^-4	0.852	INTRON side
X	20349064	X_20349064_SNP [dm3] X_20478037_SNP [dm6]	C	A	4.359e^-4	0.852	SYNONYMOUS_CODING RhoGAP19D
3R	23055773	3R_23055773_SNP [dm3] 3R_27230051_SNP [dm6]	C	T	4.360e^-4	0.852	SYNONYMOUS_CODING CG31064 UPSTREAM CG42814 DOWNSTREAM CG31064	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13389474	2R_13389474_SNP [dm3] 2R_17501969_SNP [dm6]	T	A	4.364e^-4	0.852	UPSTREAM CG43164 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9359134	2L_9359134_SNP [dm3] 2L_9359134_SNP [dm6]	G	T	4.364e^-4	0.852	INTERGENIC
2R	6883723	2R_6883723_SNP [dm3] 2R_10996218_SNP [dm6]	T	C	4.366e^-4	0.852	INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11564044	X_11564044_SNP [dm3] X_11670011_SNP [dm6]	C	A	4.385e^-4	0.852	INTRON Ptp10D
2R	10231971	2R_10231971_SNP [dm3] 2R_14344466_SNP [dm6]	A	G	4.388e^-4	0.852	INTRON Shroom
3R	7050944	3R_7050944_SNP [dm3] 3R_11225222_SNP [dm6]	T	A	4.389e^-4	0.852	UPSTREAM scpr-C DOWNSTREAM snoRNA:Me28S-G2017 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med
X	9568119	X_9568119_SNP [dm3] X_9674086_SNP [dm6]	G	A	4.390e^-4	0.852	SYNONYMOUS_CODING nej	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_sens
3R	5080521	3R_5080521_SNP [dm3] 3R_9254799_SNP [dm6]	A	T	4.402e^-4	0.852	UPSTREAM CG16734 DOWNSTREAM CR16735 INTERGENIC
2R	10674549	2R_10674549_SNP [dm3] 2R_14787044_SNP [dm6]	C	A	4.405e^-4	0.852	INTRON kn	TF binding site BDTNP1_TFBS_dl
2R	2717461	2R_2717461_SNP [dm3] 2R_6829956_SNP [dm6]	G	T	4.405e^-4	0.852	NON_SYNONYMOUS_CODING CG15236	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9593441	3L_9593441_SNP [dm3] 3L_9600341_SNP [dm6]	G	A	4.408e^-4	0.852	UTR_3_PRIME CG3222 DOWNSTREAM CG3088
2L	5956283	2L_5956283_SNP [dm3] 2L_5956283_SNP [dm6]	C	G	4.408e^-4	0.852	UTR_5_PRIME CG13999 UPSTREAM Vm26Ab DOWNSTREAM CG13998
3R	16795701	3R_16795701_SNP [dm3] 3R_20969979_SNP [dm6]	T	A	4.409e^-4	0.852	INTRON Atpalpha
2R	6679768	2R_6679768_SNP [dm3] 2R_10792263_SNP [dm6]	A	G	4.409e^-4	0.852	NON_SYNONYMOUS_CODING mthl13 INTRON CG33144
X	16798692	X_16798692_SNP [dm3] X_16904659_SNP [dm6]	C	T	4.411e^-4	0.852	EXON CR44754
2R	7643668	2R_7643668_SNP [dm3] 2R_11756163_SNP [dm6]	T	C	4.411e^-4	0.852	UPSTREAM ths INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	4588668	2L_4588668_SNP [dm3] 2L_4588668_SNP [dm6]	C	A	4.420e^-4	0.852	INTRON dp	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	11380086	2L_11380086_SNP [dm3] 2L_11380086_SNP [dm6]	T	A	4.425e^-4	0.852	INTERGENIC	regulatory region REDfly_CRMs
2L	17781412	2L_17781412_SNP [dm3] 2L_17781412_SNP [dm6]	G	A	4.426e^-4	0.852	INTERGENIC
3R	9257679	3R_9257679_SNP [dm3] 3R_13431957_SNP [dm6]	C	T	4.431e^-4	0.852	SYNONYMOUS_CODING yrt
3L	20523720	3L_20523720_SNP [dm3] 3L_20530620_SNP [dm6]	T	A	4.437e^-4	0.853	INTRON Rcd2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7867873	3R_7867873_SNP [dm3] 3R_12042151_SNP [dm6]	A	T	4.450e^-4	0.853	INTRON CG14736
2L	8549272	2L_8549272_SNP [dm3] 2L_8549272_SNP [dm6]	C	T	4.455e^-4	0.853	INTRON Sema-1a
3R	7990282	3R_7990282_SNP [dm3] 3R_12164560_SNP [dm6]	C	A	4.473e^-4	0.853	NON_SYNONYMOUS_CODING Cpn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13155741	3R_13155741_SNP [dm3] 3R_17330019_SNP [dm6]	G	T	4.480e^-4	0.853	INTRON beat-IIa
2R	17223321	2R_17223321_SNP [dm3] 2R_21335816_SNP [dm6]	A	C	4.485e^-4	0.853	SYNONYMOUS_CODING dom DOWNSTREAM snoRNA:Me28S-G2596 & 1 other INTRON dom	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5632313	3L_5632313_SNP [dm3] 3L_5639213_SNP [dm6]	A	T	4.487e^-4	0.853	INTRON Blimp-1
3R	2514105	3R_2514105_SNP [dm3] 3R_6688383_SNP [dm6]	A	C	4.494e^-4	0.853	DOWNSTREAM Ccp84Ag INTERGENIC
3L	821992	3L_821992_SNP [dm3] 3L_821992_SNP [dm6]	T	C	4.494e^-4	0.853	DOWNSTREAM CR43883 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	10332911	3R_10332911_SNP [dm3] 3R_14507189_SNP [dm6]	T	G	4.496e^-4	0.853	INTRON CR44177
3R	11724808	3R_11724808_SNP [dm3] 3R_15899086_SNP [dm6]	T	C	4.496e^-4	0.853	INTRON glob1
2L	11252187	2L_11252187_SNP [dm3] 2L_11252187_SNP [dm6]	C	T	4.503e^-4	0.853	INTRON ab	TF binding site BDTNP1_TFBS_twi
X	3418829	X_3418829_INS [dm3] X_3524796_INS [dm6]	T	TC	4.513e^-4	0.853	INTRON CG32791
2L	12392683	2L_12392683_SNP [dm3] 2L_12392683_SNP [dm6]	A	T	4.518e^-4	0.853	INTRON bru-2
2R	17223201	2R_17223201_SNP [dm3] 2R_21335696_SNP [dm6]	A	C	4.519e^-4	0.853	SYNONYMOUS_CODING dom DOWNSTREAM snoRNA:Me28S-G2596 & 1 other INTRON dom	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	21107791	X_21107791_INS [dm3] X_21236764_INS [dm6]	T	TCT	4.520e^-4	0.853	INTRON CG32521
3L	3794142	3L_3794142_DEL [dm3] 3L_3794142_DEL [dm6]	TT	T	4.521e^-4	0.853	INTRON CG32264
2L	11380230	2L_11380230_SNP [dm3] 2L_11380230_SNP [dm6]	C	A	4.535e^-4	0.853	INTERGENIC	regulatory region REDfly_CRMs
X	14853496	X_14853496_SNP [dm3] X_14959463_SNP [dm6]	T	A	4.536e^-4	0.853	INTRON eag	TF binding site mE1_TFBS_bab1
2R	11525232	2R_11525232_SNP [dm3] 2R_15637727_SNP [dm6]	C	T	4.538e^-4	0.853	INTRON CG42524
3R	23518083	3R_23518083_SNP [dm3] 3R_27692361_SNP [dm6]	G	A	4.545e^-4	0.853	UTR_3_PRIME CG12880
3R	16405241	3R_16405241_INS [dm3] 3R_20579519_INS [dm6]	G	GG	4.547e^-4	0.853	UTR_5_PRIME EloB UPSTREAM Srp14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	4708805	2L_4708805_DEL [dm3] 2L_4708805_DEL [dm6]	CCAGTCCGCTT...	C	4.548e^-4	0.853	INTRON CG34351
3R	13304287	3R_13304287_SNP [dm3] 3R_17478565_SNP [dm6]	G	C	4.549e^-4	0.853	SPLICE_SITE_REGION Dscam3 INTRON Dscam3
3L	1888013	3L_1888013_SNP [dm3] 3L_1888013_SNP [dm6]	A	G	4.549e^-4	0.853	INTRON Tmhs	TF binding site mE1_TFBS_cnc mE1_TFBS_inv

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.135e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	4.8185	0.0899

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1841 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	12600320	2L_12600320_SNP [dm3] 2L_12600320_SNP [dm6]	A	T	3.798e^-7	0.451	INTRON nub
3R	4472957	3R_4472957_SNP [dm3] 3R_8647235_SNP [dm6]	G	T	5.986e^-7	0.451	UTR_3_PRIME Mkk4 DOWNSTREAM Mkk4
3R	14924513	3R_14924513_SNP [dm3] 3R_19098791_SNP [dm6]	T	C	7.213e^-7	0.451	INTRON CG6040
3R	14924547	3R_14924547_SNP [dm3] 3R_19098825_SNP [dm6]	C	G	1.287e^-6	0.498	INTRON CG6040
X	10500322	X_10500322_DEL [dm3] X_10606289_DEL [dm6]	AGCAAGTTTTCGAATTTTCA...	A	1.573e^-6	0.498	INTRON CG43347
3R	14924511	3R_14924511_SNP [dm3] 3R_19098789_SNP [dm6]	T	A	1.683e^-6	0.498	INTRON CG6040
3L	16041040	3L_16041040_SNP [dm3] 3L_16047940_SNP [dm6]	T	G	2.079e^-6	0.498	INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	23856601	3R_23856601_SNP [dm3] 3R_28030879_SNP [dm6]	G	A	2.125e^-6	0.498	SYNONYMOUS_CODING CG34362	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27513199	3R_27513199_SNP [dm3] 3R_31687477_SNP [dm6]	C	T	3.156e^-6	0.533	DOWNSTREAM CR45564 INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site mE1_TFBS_chinmo
2R	14149300	2R_14149300_INS [dm3] 2R_18261795_INS [dm6]	T	TC	3.536e^-6	0.533	INTERGENIC
2R	14149303	2R_14149303_DEL [dm3] 2R_18261798_DEL [dm6]	AAACT	A	3.536e^-6	0.533	INTERGENIC
3L	839225	3L_839225_SNP [dm3] 3L_839225_SNP [dm6]	C	T	3.593e^-6	0.533	UTR_3_PRIME CG13887 DOWNSTREAM CG13902 INTRON CG13887	TF binding site mE1_TFBS_inv
3L	13181535	3L_13181535_SNP [dm3] 3L_13188435_SNP [dm6]	A	T	3.761e^-6	0.533	INTERGENIC
3R	12732724	3R_12732724_SNP [dm3] 3R_16907002_SNP [dm6]	C	T	3.977e^-6	0.533	INTRON iab-8	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	12160627	2L_12160627_SNP [dm3] 2L_12160627_SNP [dm6]	T	G	5.375e^-6	0.672	INTRON CG31760	TF binding site mE1_TFBS_HSA
3R	23856487	3R_23856487_SNP [dm3] 3R_28030765_SNP [dm6]	C	T	5.748e^-6	0.674	SYNONYMOUS_CODING CG34362	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	7752373	X_7752373_SNP [dm3] X_7858340_SNP [dm6]	A	T	6.917e^-6	0.747	SYNONYMOUS_CODING CG1409
2L	4355538	2L_4355538_SNP [dm3] 2L_4355538_SNP [dm6]	A	C	7.172e^-6	0.747	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	12732786	3R_12732786_SNP [dm3] 3R_16907064_SNP [dm6]	A	G	8.059e^-6	0.767	INTRON iab-8	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	10500200	X_10500200_SNP [dm3] X_10606167_SNP [dm6]	T	C	8.175e^-6	0.767	INTRON CG43347
2R	8352074	2R_8352074_SNP [dm3] 2R_12464569_SNP [dm6]	C	A	9.160e^-6	0.792	SYNONYMOUS_CODING Lac	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4707969	2L_4707969_SNP [dm3] 2L_4707969_SNP [dm6]	G	T	9.291e^-6	0.792	INTRON CG34351
2L	4371850	2L_4371850_SNP [dm3] 2L_4371850_SNP [dm6]	A	C	1.003e^-5	0.818	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
X	15114945	X_15114945_SNP [dm3] X_15220912_SNP [dm6]	C	G	1.075e^-5	0.84	INTRON CG43075
X	13955851	X_13955851_INS [dm3] X_14061818_INS [dm6]	G	GGCTG	1.154e^-5	0.866	UPSTREAM Ste:CG33236 INTERGENIC
3R	23856711	3R_23856711_SNP [dm3] 3R_28030989_SNP [dm6]	G	C	1.273e^-5	0.918	NON_SYNONYMOUS_CODING CG34362	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5144752	3R_5144752_SNP [dm3] 3R_9319030_SNP [dm6]	T	C	1.327e^-5	0.922	INTRON CG8861
2R	17176266	2R_17176266_SNP [dm3] 2R_21288761_SNP [dm6]	A	G	1.539e^-5	0.968	SYNONYMOUS_CODING CG10505	TF binding site mE1_TFBS_chinmo
3L	3533304	3L_3533304_SNP [dm3] 3L_3533304_SNP [dm6]	C	T	1.637e^-5	0.968	INTRON Eip63E
2L	2860101	2L_2860101_DEL [dm3] 2L_2860101_DEL [dm6]	AT	A	1.687e^-5	0.968	INTRON CG2991	TF binding site mE1_TFBS_inv
2R	12633116	2R_12633116_SNP [dm3] 2R_16745611_SNP [dm6]	G	A	1.695e^-5	0.968	UTR_3_PRIME CG15617 UPSTREAM Sfp53D	TF binding site mE1_TFBS_cad
2R	8370724	2R_8370724_SNP [dm3] 2R_12483219_SNP [dm6]	A	T	1.969e^-5	0.968	INTRON Dh44-R2
2R	16109640	2R_16109640_SNP [dm3] 2R_20222135_SNP [dm6]	C	T	1.971e^-5	0.968	EXON CR45423
3R	23856568	3R_23856568_SNP [dm3] 3R_28030846_SNP [dm6]	T	G	2.006e^-5	0.968	NON_SYNONYMOUS_CODING CG34362	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6891371	2R_6891371_SNP [dm3] 2R_11003866_SNP [dm6]	A	G	2.381e^-5	0.968	INTRON luna
3R	25191216	3R_25191216_SNP [dm3] 3R_29365494_SNP [dm6]	A	C	2.442e^-5	0.968	INTERGENIC
3L	2626580	3L_2626580_SNP [dm3] 3L_2626580_SNP [dm6]	A	T	2.446e^-5	0.968	INTRON Pxn	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	7455990	X_7455990_SNP [dm3] X_7561957_SNP [dm6]	A	T	2.455e^-5	0.968	DOWNSTREAM CR44502 INTERGENIC
2R	1407715	2R_1407715_SNP [dm3] 2R_5520210_SNP [dm6]	C	T	2.526e^-5	0.968	INTRON CG30438	transposable element FlyBase
3R	12732754	3R_12732754_DEL [dm3] 3R_16907032_DEL [dm6]	GCTGA	G	2.662e^-5	0.968	INTRON iab-8	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	7730170	X_7730170_SNP [dm3] X_7836137_SNP [dm6]	A	G	2.678e^-5	0.968	INTRON CG1402
X	13708767	X_13708767_SNP [dm3] X_13814734_SNP [dm6]	A	G	2.686e^-5	0.968	SYNONYMOUS_CODING Clic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	2201072	3L_2201072_SNP [dm3] 3L_2201072_SNP [dm6]	G	A	2.727e^-5	0.968	INTERGENIC
2L	5759723	2L_5759723_SNP [dm3] 2L_5759723_SNP [dm6]	C	A	2.813e^-5	0.968	SYNONYMOUS_CODING CG11030
2L	15456417	2L_15456417_SNP [dm3] 2L_15456417_SNP [dm6]	C	T	2.973e^-5	0.968	INTERGENIC
3L	14141337	3L_14141337_SNP [dm3] 3L_14148237_SNP [dm6]	T	A	2.998e^-5	0.968	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3134187	3L_3134187_SNP [dm3] 3L_3134187_SNP [dm6]	G	A	3.023e^-5	0.968	UPSTREAM CG11537 INTRON CG11537
3L	3924544	3L_3924544_DEL [dm3] 3L_3924544_DEL [dm6]	GCGAATCAG	G	3.128e^-5	0.968	INTRON Eip63F-1
2L	2390906	2L_2390906_SNP [dm3] 2L_2390906_SNP [dm6]	T	G	3.263e^-5	0.968	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
3R	24198356	3R_24198356_SNP [dm3] 3R_28372634_SNP [dm6]	T	A	3.286e^-5	0.968	INTERGENIC
3R	10259255	3R_10259255_SNP [dm3] 3R_14433533_SNP [dm6]	C	G	3.291e^-5	0.968	INTRON cv-c	TF binding site mE1_TFBS_chinmo
3L	18716266	3L_18716266_SNP [dm3] 3L_18723166_SNP [dm6]	C	T	3.311e^-5	0.968	UPSTREAM CR43985 INTRON CG12477	TF binding site mE1_TFBS_cad
3R	12732764	3R_12732764_SNP [dm3] 3R_16907042_SNP [dm6]	C	A	3.393e^-5	0.968	INTRON iab-8	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	23856535	3R_23856535_SNP [dm3] 3R_28030813_SNP [dm6]	G	A	3.401e^-5	0.968	SYNONYMOUS_CODING CG34362	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5012861	X_5012861_DEL [dm3] X_5118828_DEL [dm6]	AA	A	3.441e^-5	0.968	INTRON rg & 1 other
3L	4212503	3L_4212503_SNP [dm3] 3L_4212503_SNP [dm6]	G	A	3.472e^-5	0.968	SYNONYMOUS_CODING Cpr64Ac UPSTREAM Cpr64Ab INTRON CG43367	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	7535074	X_7535074_INS [dm3] X_7641041_INS [dm6]	A	ACA	3.567e^-5	0.968	INTRON ct	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	12633102	2R_12633102_SNP [dm3] 2R_16745597_SNP [dm6]	G	A	3.639e^-5	0.968	UTR_3_PRIME CG15617 UPSTREAM Sfp53D	TF binding site mE1_TFBS_cad
X	7535575	X_7535575_SNP [dm3] X_7641542_SNP [dm6]	T	C	3.657e^-5	0.968	INTRON ct
3L	14141407	3L_14141407_SNP [dm3] 3L_14148307_SNP [dm6]	G	C	3.662e^-5	0.968	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3L	14141421	3L_14141421_DEL [dm3] 3L_14148321_DEL [dm6]	AT	C	3.662e^-5	0.968	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
X	18622262	X_18622262_SNP [dm3] X_18728229_SNP [dm6]	C	A	3.695e^-5	0.968	INTERGENIC
3R	24225203	3R_24225203_SNP [dm3] 3R_28399481_SNP [dm6]	T	G	3.818e^-5	0.968	INTERGENIC
2R	12633024	2R_12633024_SNP [dm3] 2R_16745519_SNP [dm6]	C	T	3.840e^-5	0.968	UTR_3_PRIME CG15617 UPSTREAM Sfp53D	TF binding site mE1_TFBS_cad
3L	2626748	3L_2626748_SNP [dm3] 3L_2626748_SNP [dm6]	C	T	3.862e^-5	0.968	INTRON Pxn	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	7532481	X_7532481_SNP [dm3] X_7638448_SNP [dm6]	A	C	3.887e^-5	0.968	INTRON ct
3L	16093381	3L_16093381_SNP [dm3] 3L_16100281_SNP [dm6]	T	A	3.906e^-5	0.968	UTR_5_PRIME CG5414 DOWNSTREAM ms_3_72Dt
2L	2390810	2L_2390810_SNP [dm3] 2L_2390810_SNP [dm6]	G	A	3.926e^-5	0.968	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
2L	12155772	2L_12155772_SNP [dm3] 2L_12155772_SNP [dm6]	G	A	3.946e^-5	0.968	INTRON CG31760
2R	17592932	2R_17592932_SNP [dm3] 2R_21705427_SNP [dm6]	T	C	4.002e^-5	0.968	UPSTREAM HmgZ INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
X	5156996	X_5156996_SNP [dm3] X_5262963_SNP [dm6]	G	A	4.011e^-5	0.968	INTERGENIC
2L	3283035	2L_3283035_SNP [dm3] 2L_3283035_SNP [dm6]	G	A	4.038e^-5	0.968	INTERGENIC
3L	14141405	3L_14141405_SNP [dm3] 3L_14148305_SNP [dm6]	T	C	4.074e^-5	0.968	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
X	5012893	X_5012893_SNP [dm3] X_5118860_SNP [dm6]	G	A	4.092e^-5	0.968	INTRON rg & 1 other
3R	22684457	3R_22684457_SNP [dm3] 3R_26858735_SNP [dm6]	A	T	4.170e^-5	0.968	INTRON Lerp	TF binding site mE1_TFBS_chinmo
3R	10261796	3R_10261796_SNP [dm3] 3R_14436074_SNP [dm6]	G	A	4.181e^-5	0.968	INTRON cv-c
2L	10962126	2L_10962126_SNP [dm3] 2L_10962126_SNP [dm6]	C	T	4.192e^-5	0.968	INTRON dpr2
2L	3545253	2L_3545253_SNP [dm3] 2L_3545253_SNP [dm6]	A	T	4.245e^-5	0.968	START_GAINED drm UTR_5_PRIME drm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	931623	2L_931623_SNP [dm3] 2L_931623_SNP [dm6]	G	C	4.433e^-5	0.968	INTRON CG4341	TF binding site mE1_TFBS_chinmo
2R	17834431	2R_17834431_SNP [dm3] 2R_21946926_SNP [dm6]	T	C	4.474e^-5	0.968	DOWNSTREAM Fili INTERGENIC
X	7529947	X_7529947_SNP [dm3] X_7635914_SNP [dm6]	T	G	4.478e^-5	0.968	INTRON ct
X	7456045	X_7456045_SNP [dm3] X_7562012_SNP [dm6]	T	C	4.601e^-5	0.968	DOWNSTREAM CR44502 INTERGENIC
2L	12730359	2L_12730359_SNP [dm3] 2L_12730359_SNP [dm6]	C	T	4.612e^-5	0.968	INTRON MRP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23487743	3R_23487743_SNP [dm3] 3R_27662021_SNP [dm6]	C	T	4.637e^-5	0.968	UPSTREAM unc80 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8924771	2R_8924771_SNP [dm3] 2R_13037266_SNP [dm6]	G	C	4.660e^-5	0.968	INTERGENIC
X	11335036	X_11335036_SNP [dm3] X_11441003_SNP [dm6]	A	G	4.710e^-5	0.968	INTRON Evi5
2R	8924165	2R_8924165_SNP [dm3] 2R_13036660_SNP [dm6]	A	T	4.796e^-5	0.968	INTERGENIC
3R	4582520	3R_4582520_SNP [dm3] 3R_8756798_SNP [dm6]	C	G	4.805e^-5	0.968	DOWNSTREAM CR44228 INTRON CG11768 & 1 other
X	7535069	X_7535069_SNP [dm3] X_7641036_SNP [dm6]	G	T	4.831e^-5	0.968	INTRON ct	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	4513330	2L_4513330_SNP [dm3] 2L_4513330_SNP [dm6]	T	A	4.867e^-5	0.968	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25435703	3R_25435703_SNP [dm3] 3R_29609981_SNP [dm6]	C	T	4.987e^-5	0.968	INTRON alph	TF binding site mE1_TFBS_chinmo
3L	4922059	3L_4922059_SNP [dm3] 3L_4922059_SNP [dm6]	T	A	4.988e^-5	0.968	INTERGENIC
3R	14924531	3R_14924531_SNP [dm3] 3R_19098809_SNP [dm6]	A	G	5.068e^-5	0.968	INTRON CG6040
3R	22684478	3R_22684478_SNP [dm3] 3R_26858756_SNP [dm6]	A	T	5.100e^-5	0.968	INTRON Lerp	TF binding site mE1_TFBS_chinmo
X	12741149	X_12741149_SNP [dm3] X_12847116_SNP [dm6]	T	C	5.123e^-5	0.968	INTRON Pde9
2L	4371256	2L_4371256_SNP [dm3] 2L_4371256_SNP [dm6]	T	G	5.124e^-5	0.968	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3L	14142845	3L_14142845_SNP [dm3] 3L_14149745_SNP [dm6]	T	C	5.255e^-5	0.968	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	2616619	3L_2616619_SNP [dm3] 3L_2616619_SNP [dm6]	G	T	5.335e^-5	0.968	INTRON Pxn
X	14566468	X_14566468_SNP [dm3] X_14672435_SNP [dm6]	C	T	5.361e^-5	0.968	INTERGENIC
X	18460592	X_18460592_SNP [dm3] X_18566559_SNP [dm6]	T	A	5.447e^-5	0.968	NON_SYNONYMOUS_CODING Bx DOWNSTREAM tRNA:CR32546 INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	7535070	X_7535070_SNP [dm3] X_7641037_SNP [dm6]	G	A	5.448e^-5	0.968	INTRON ct	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	12633014	2R_12633014_SNP [dm3] 2R_16745509_SNP [dm6]	A	G	5.503e^-5	0.968	UTR_3_PRIME CG15617 UPSTREAM Sfp53D	TF binding site mE1_TFBS_cad
2L	13884873	2L_13884873_INS [dm3] 2L_13884873_INS [dm6]	T	TGACAAAC	5.631e^-5	0.968	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8039184	3L_8039184_SNP [dm3] 3L_8046084_SNP [dm6]	T	A	5.665e^-5	0.968	INTRON nmo
X	7730220	X_7730220_SNP [dm3] X_7836187_SNP [dm6]	G	C	5.736e^-5	0.968	INTRON CG1402
3R	4616303	3R_4616303_SNP [dm3] 3R_8790581_SNP [dm6]	T	A	5.756e^-5	0.968	UTR_5_PRIME Pif1B & 1 other INTRON Pif1A & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8400534	3L_8400534_SNP [dm3] 3L_8407434_SNP [dm6]	C	G	5.808e^-5	0.968	SYNONYMOUS_CODING Oseg1 DOWNSTREAM CG13667
2R	12633092	2R_12633092_SNP [dm3] 2R_16745587_SNP [dm6]	T	C	5.829e^-5	0.968	UTR_3_PRIME CG15617 UPSTREAM Sfp53D	TF binding site mE1_TFBS_cad
3L	8909981	3L_8909981_SNP [dm3] 3L_8916881_SNP [dm6]	A	T	5.944e^-5	0.968	INTRON Tsp66E
2R	14147972	2R_14147972_DEL [dm3] 2R_18260467_DEL [dm6]	GA	G	5.950e^-5	0.968	INTERGENIC
2R	8924745	2R_8924745_SNP [dm3] 2R_13037240_SNP [dm6]	A	C	5.976e^-5	0.968	INTERGENIC
3R	15710852	3R_15710852_SNP [dm3] 3R_19885130_SNP [dm6]	T	A	5.987e^-5	0.968	INTRON Pk92B
3R	15710859	3R_15710859_SNP [dm3] 3R_19885137_SNP [dm6]	C	T	5.987e^-5	0.968	INTRON Pk92B
3R	15710869	3R_15710869_SNP [dm3] 3R_19885147_SNP [dm6]	T	A	5.987e^-5	0.968	INTRON Pk92B
3R	15710941	3R_15710941_SNP [dm3] 3R_19885219_SNP [dm6]	C	T	5.987e^-5	0.968	SYNONYMOUS_CODING Pk92B
3R	17221924	3R_17221924_SNP [dm3] 3R_21396202_SNP [dm6]	A	G	5.987e^-5	0.968	INTERGENIC
3R	22827279	3R_22827279_SNP [dm3] 3R_27001557_SNP [dm6]	A	G	6.173e^-5	0.969	NON_SYNONYMOUS_CODING CG31077 INTRON RYa-R	TF binding site mE1_TFBS_sens
2R	11674503	2R_11674503_SNP [dm3] 2R_15786998_SNP [dm6]	G	A	6.275e^-5	0.969	INTRON Zasp52
2L	6021728	2L_6021728_SNP [dm3] 2L_6021728_SNP [dm6]	A	C	6.348e^-5	0.969	DOWNSTREAM CG13996 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2390867	2L_2390867_SNP [dm3] 2L_2390867_SNP [dm6]	G	A	6.382e^-5	0.969	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
3L	2659255	3L_2659255_SNP [dm3] 3L_2659255_SNP [dm6]	C	G	6.388e^-5	0.969	UPSTREAM CG33233 INTRON Fife	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	4216009	3R_4216009_SNP [dm3] 3R_8390287_SNP [dm6]	T	G	6.392e^-5	0.969	INTRON CG45263	TF binding site BDTNP1_TFBS_dl
2R	10227190	2R_10227190_SNP [dm3] 2R_14339685_SNP [dm6]	G	A	6.398e^-5	0.969	INTRON Shroom
2L	4371304	2L_4371304_SNP [dm3] 2L_4371304_SNP [dm6]	C	G	6.444e^-5	0.969	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2R	12633101	2R_12633101_SNP [dm3] 2R_16745596_SNP [dm6]	A	C	6.461e^-5	0.969	UTR_3_PRIME CG15617 UPSTREAM Sfp53D	TF binding site mE1_TFBS_cad
2R	12633090	2R_12633090_SNP [dm3] 2R_16745585_SNP [dm6]	C	A	6.545e^-5	0.973	UTR_3_PRIME CG15617 UPSTREAM Sfp53D	TF binding site mE1_TFBS_cad
3L	18743070	3L_18743070_SNP [dm3] 3L_18749970_SNP [dm6]	A	G	6.624e^-5	0.973	NON_SYNONYMOUS_CODING Atg3 DOWNSTREAM ftz-f1
X	10499777	X_10499777_SNP [dm3] X_10605744_SNP [dm6]	T	A	6.640e^-5	0.973	SYNONYMOUS_CODING CG43347	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27527083	3R_27527083_SNP [dm3] 3R_31701361_SNP [dm6]	C	A	6.698e^-5	0.974	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	2659364	3L_2659364_DEL [dm3] 3L_2659364_DEL [dm6]	GCC	AA	6.784e^-5	0.975	UPSTREAM CG33233 INTRON Fife	TF binding site mE1_TFBS_chinmo
X	13808605	X_13808605_SNP [dm3] X_13914572_SNP [dm6]	A	T	6.832e^-5	0.975	INTRON mamo
X	9224651	X_9224651_INS [dm3] X_9330618_INS [dm6]	C	CATTCCTCAATTAC...	6.864e^-5	0.975	UPSTREAM CG34450 DOWNSTREAM CG34449 INTRON CG34449
2L	13917200	2L_13917200_SNP [dm3] 2L_13917200_SNP [dm6]	G	A	7.000e^-5	0.987	SYNONYMOUS_CODING Ance-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	1751054	2R_1751054_DEL [dm3] 2R_5863549_DEL [dm6]	GACATACAATGG...	G	7.290e^-5	0.991	INTERGENIC
3L	18730777	3L_18730777_SNP [dm3] 3L_18737677_SNP [dm6]	T	A	7.299e^-5	0.991	INTERGENIC
2L	10558264	2L_10558264_SNP [dm3] 2L_10558264_SNP [dm6]	A	T	7.480e^-5	0.991	INTRON Trim9	TF binding site mE1_TFBS_inv
3R	13195510	3R_13195510_SNP [dm3] 3R_17369788_SNP [dm6]	T	G	7.510e^-5	0.991	INTERGENIC
X	5012873	X_5012873_DEL [dm3] X_5118840_DEL [dm6]	ACCATGCTC	A	7.526e^-5	0.991	INTRON rg & 1 other
X	5012882	X_5012882_INS [dm3] X_5118849_INS [dm6]	G	GTTGTAT	7.526e^-5	0.991	INTRON rg & 1 other
2L	15456418	2L_15456418_SNP [dm3] 2L_15456418_SNP [dm6]	A	C	7.676e^-5	0.991	INTERGENIC
X	12688021	X_12688021_SNP [dm3] X_12793988_SNP [dm6]	T	C	7.704e^-5	0.991	SYNONYMOUS_CODING Pde9	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2390848	2L_2390848_SNP [dm3] 2L_2390848_SNP [dm6]	A	T	7.850e^-5	0.991	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
2R	15016264	2R_15016264_SNP [dm3] 2R_19128759_SNP [dm6]	A	G	7.892e^-5	0.991	UPSTREAM botv INTRON CG15117
3L	3006118	3L_3006118_SNP [dm3] 3L_3006118_SNP [dm6]	G	A	7.990e^-5	0.991	INTRON FMRFaR
3R	23856556	3R_23856556_SNP [dm3] 3R_28030834_SNP [dm6]	G	A	8.008e^-5	0.991	SYNONYMOUS_CODING CG34362	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8523278	3R_8523278_SNP [dm3] 3R_12697556_SNP [dm6]	T	A	8.052e^-5	0.991	UPSTREAM Past1 DOWNSTREAM NijC INTRON Past1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
3L	10432425	3L_10432425_SNP [dm3] 3L_10439325_SNP [dm6]	A	C	8.231e^-5	0.991	INTERGENIC	transposable element FlyBase
X	19006471	X_19006471_SNP [dm3] X_19112438_SNP [dm6]	A	G	8.257e^-5	0.991	INTERGENIC
3L	10049630	3L_10049630_SNP [dm3] 3L_10056530_SNP [dm6]	T	C	8.737e^-5	0.991	INTRON dpr6
2R	12573425	2R_12573425_INS [dm3] 2R_16685920_INS [dm6]	G	GG	8.759e^-5	0.991	INTRON CG30463
2R	8352098	2R_8352098_SNP [dm3] 2R_12464593_SNP [dm6]	C	T	8.848e^-5	0.991	SYNONYMOUS_CODING Lac	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2542931	2R_2542931_SNP [dm3] 2R_6655426_SNP [dm6]	A	T	8.901e^-5	0.991	DOWNSTREAM geminin & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	17811196	3L_17811196_SNP [dm3] 3L_17818096_SNP [dm6]	G	A	8.920e^-5	0.991	NON_SYNONYMOUS_CODING Ir75b UPSTREAM Ir75a
2R	19835225	2R_19835225_SNP [dm3] 2R_23947702_SNP [dm6]	A	T	8.946e^-5	0.991	DOWNSTREAM CG13565 & 1 other INTRON CG13565
2L	13884860	2L_13884860_SNP [dm3] 2L_13884860_SNP [dm6]	C	G	8.975e^-5	0.991	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	5136184	3L_5136184_SNP [dm3] 3L_5143084_SNP [dm6]	C	A	9.047e^-5	0.991	SYNONYMOUS_CODING CG4623 DOWNSTREAM CG10671
3L	17811191	3L_17811191_SNP [dm3] 3L_17818091_SNP [dm6]	G	A	9.057e^-5	0.991	SYNONYMOUS_CODING Ir75b UPSTREAM Ir75a
2R	9076377	2R_9076377_INS [dm3] 2R_13188872_INS [dm6]	A	ATA	9.067e^-5	0.991	INTRON seq & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_Trl
3L	14859736	3L_14859736_SNP [dm3] 3L_14866636_SNP [dm6]	T	C	9.094e^-5	0.991	SYNONYMOUS_CODING CG17839
3L	8209861	3L_8209861_INS [dm3] 3L_8216761_INS [dm6]	A	ATGTACATA	9.125e^-5	0.991	DOWNSTREAM CG8012 INTERGENIC
X	12692201	X_12692201_SNP [dm3] X_12798168_SNP [dm6]	C	T	9.179e^-5	0.991	INTRON Pde9
X	5156834	X_5156834_SNP [dm3] X_5262801_SNP [dm6]	C	T	9.242e^-5	0.991	INTERGENIC
2L	2390833	2L_2390833_SNP [dm3] 2L_2390833_SNP [dm6]	C	T	9.325e^-5	0.991	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
2L	2390850	2L_2390850_SNP [dm3] 2L_2390850_SNP [dm6]	C	T	9.325e^-5	0.991	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
3R	4899436	3R_4899436_SNP [dm3] 3R_9073714_SNP [dm6]	C	G	9.443e^-5	0.991	INTRON pum
2R	17338567	2R_17338567_SNP [dm3] 2R_21451062_SNP [dm6]	T	C	9.589e^-5	0.991	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14389265	3L_14389265_SNP [dm3] 3L_14396165_SNP [dm6]	T	A	9.639e^-5	0.991	INTERGENIC
2L	13884863	2L_13884863_DEL [dm3] 2L_13884863_DEL [dm6]	AAGTAATA	A	9.698e^-5	0.991	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	15443395	2L_15443395_SNP [dm3] 2L_15443395_SNP [dm6]	C	A	9.717e^-5	0.991	INTERGENIC
3L	16040962	3L_16040962_SNP [dm3] 3L_16047862_SNP [dm6]	C	T	9.777e^-5	0.991	INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	12632865	2R_12632865_INS [dm3] 2R_16745360_INS [dm6]	T	TA	9.858e^-5	0.991	UTR_3_PRIME CG15617 UPSTREAM Sfp53D
3L	14141471	3L_14141471_SNP [dm3] 3L_14148371_SNP [dm6]	T	G	1.002e^-4	0.991	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
X	19006491	X_19006491_SNP [dm3] X_19112458_SNP [dm6]	T	A	1.003e^-4	0.991	INTERGENIC
3L	10049646	3L_10049646_DEL [dm3] 3L_10056546_DEL [dm6]	GT	G	1.010e^-4	0.991	INTRON dpr6
3R	26015112	3R_26015112_SNP [dm3] 3R_30189390_SNP [dm6]	C	A	1.016e^-4	0.991	INTRON CG9747
X	12446759	X_12446759_SNP [dm3] X_12552726_SNP [dm6]	T	C	1.021e^-4	0.991	UPSTREAM Cpr11B INTRON CG43921
3R	22105750	3R_22105750_SNP [dm3] 3R_26280028_SNP [dm6]	A	C	1.022e^-4	0.991	INTERGENIC
X	10500604	X_10500604_SNP [dm3] X_10606571_SNP [dm6]	C	T	1.024e^-4	0.991	SYNONYMOUS_CODING CG43347
3L	330235	3L_330235_SNP [dm3] 3L_330235_SNP [dm6]	G	C	1.036e^-4	0.991	INTRON Ptpmeg & 1 other
3R	23856730	3R_23856730_SNP [dm3] 3R_28031008_SNP [dm6]	T	A	1.038e^-4	0.991	SYNONYMOUS_CODING CG34362	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23487731	3R_23487731_DEL [dm3] 3R_27662009_DEL [dm6]	ACTTTAA	A	1.050e^-4	0.991	UPSTREAM unc80 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10410693	3L_10410693_SNP [dm3] 3L_10417593_SNP [dm6]	G	A	1.054e^-4	0.991	INTERGENIC
2L	13139202	2L_13139202_SNP [dm3] 2L_13139202_SNP [dm6]	G	A	1.055e^-4	0.991	INTERGENIC
X	12717281	X_12717281_DEL [dm3] X_12823248_DEL [dm6]	TTGCCTTATTGCTTTCGCTT...	T	1.055e^-4	0.991	INTRON Pde9
X	7529311	X_7529311_SNP [dm3] X_7635278_SNP [dm6]	G	A	1.057e^-4	0.991	INTRON ct	TF binding site BDTNP1_TFBS_dl
3L	9863718	3L_9863718_SNP [dm3] 3L_9870618_SNP [dm6]	C	T	1.057e^-4	0.991	UTR_3_PRIME CG8108	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	1343241	2R_1343241_SNP [dm3] 2R_5455736_SNP [dm6]	T	C	1.063e^-4	0.991	UTR_3_PRIME laccase2
X	11335093	X_11335093_SNP [dm3] X_11441060_SNP [dm6]	C	A	1.066e^-4	0.991	INTRON Evi5
X	10500601	X_10500601_SNP [dm3] X_10606568_SNP [dm6]	G	A	1.071e^-4	0.991	SYNONYMOUS_CODING CG43347
3L	10345760	3L_10345760_SNP [dm3] 3L_10352660_SNP [dm6]	C	A	1.072e^-4	0.991	INTRON CR44327
3L	8039177	3L_8039177_SNP [dm3] 3L_8046077_SNP [dm6]	T	C	1.074e^-4	0.991	INTRON nmo
X	18622113	X_18622113_SNP [dm3] X_18728080_SNP [dm6]	A	G	1.083e^-4	0.991	INTERGENIC
2L	4371246	2L_4371246_SNP [dm3] 2L_4371246_SNP [dm6]	T	G	1.093e^-4	0.991	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2R	8367662	2R_8367662_SNP [dm3] 2R_12480157_SNP [dm6]	C	G	1.096e^-4	0.991	INTRON Dh44-R2
2L	19732070	2L_19732070_SNP [dm3] 2L_19732070_SNP [dm6]	T	A	1.101e^-4	0.991	DOWNSTREAM CG10462 & 1 other INTERGENIC
2L	2390898	2L_2390898_SNP [dm3] 2L_2390898_SNP [dm6]	A	T	1.106e^-4	0.991	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
3R	10843134	3R_10843134_SNP [dm3] 3R_15017412_SNP [dm6]	A	C	1.108e^-4	0.991	INTERGENIC
2R	14147768	2R_14147768_SNP [dm3] 2R_18260263_SNP [dm6]	T	C	1.110e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	2390909	2L_2390909_SNP [dm3] 2L_2390909_SNP [dm6]	A	C	1.118e^-4	0.991	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
2L	4365480	2L_4365480_SNP [dm3] 2L_4365480_SNP [dm6]	T	C	1.124e^-4	0.991	INTRON Traf4	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3R	25341014	3R_25341014_SNP [dm3] 3R_29515292_SNP [dm6]	T	C	1.132e^-4	0.991	UPSTREAM CG2014 INTERGENIC
2L	12265453	2L_12265453_SNP [dm3] 2L_12265453_SNP [dm6]	C	G	1.140e^-4	0.991	INTRON aret
2L	4737803	2L_4737803_SNP [dm3] 2L_4737803_SNP [dm6]	T	G	1.141e^-4	0.991	INTRON CG15630	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	3573442	2R_3573442_SNP [dm3] 2R_7685937_SNP [dm6]	G	C	1.146e^-4	0.991	INTRON CG1399
3L	839651	3L_839651_SNP [dm3] 3L_839651_SNP [dm6]	T	C	1.154e^-4	0.991	UTR_3_PRIME CG13887 DOWNSTREAM CG13902
3R	7340784	3R_7340784_SNP [dm3] 3R_11515062_SNP [dm6]	C	T	1.163e^-4	0.991	INTERGENIC
3R	21495123	3R_21495123_SNP [dm3] 3R_25669401_SNP [dm6]	A	G	1.167e^-4	0.991	SYNONYMOUS_CODING Lgr3
3L	328786	3L_328786_SNP [dm3] 3L_328786_SNP [dm6]	G	T	1.171e^-4	0.991	UPSTREAM Atac3 INTRON Ptpmeg	TF binding site BDTNP1_TFBS_dl
3R	25732368	3R_25732368_SNP [dm3] 3R_29906646_SNP [dm6]	C	A	1.174e^-4	0.991	DOWNSTREAM CG15515 INTERGENIC
2R	17846134	2R_17846134_SNP [dm3] 2R_21958629_SNP [dm6]	C	G	1.178e^-4	0.991	INTERGENIC
2R	18935521	2R_18935521_SNP [dm3] 2R_23047998_SNP [dm6]	C	T	1.182e^-4	0.991	SYNONYMOUS_CODING twi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12633118	2R_12633118_SNP [dm3] 2R_16745613_SNP [dm6]	G	A	1.189e^-4	0.991	UTR_3_PRIME CG15617 UPSTREAM Sfp53D	TF binding site mE1_TFBS_cad
2L	7087064	2L_7087064_SNP [dm3] 2L_7087064_SNP [dm6]	A	G	1.189e^-4	0.991	INTERGENIC
2L	19646903	2L_19646903_SNP [dm3] 2L_19646903_SNP [dm6]	A	T	1.193e^-4	0.991	INTRON Lar
3R	7990282	3R_7990282_SNP [dm3] 3R_12164560_SNP [dm6]	C	A	1.193e^-4	0.991	NON_SYNONYMOUS_CODING Cpn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13181555	3L_13181555_SNP [dm3] 3L_13188455_SNP [dm6]	T	C	1.198e^-4	0.991	INTERGENIC
2R	13426813	2R_13426813_SNP [dm3] 2R_17539308_SNP [dm6]	A	G	1.202e^-4	0.991	UPSTREAM CG43370 DOWNSTREAM eIF3-S9 INTERGENIC	TF binding site mE1_TFBS_cad
2L	18504005	2L_18504005_SNP [dm3] 2L_18504005_SNP [dm6]	T	C	1.216e^-4	0.991	UPSTREAM kon INTERGENIC
2R	17333125	2R_17333125_SNP [dm3] 2R_21445620_SNP [dm6]	A	G	1.225e^-4	0.991	INTRON Sdc
2R	20055584	2R_20055584_SNP [dm3] 2R_24168061_SNP [dm6]	C	T	1.231e^-4	0.991	INTRON CG3328	TF binding site mE1_TFBS_chinmo
3R	17230401	3R_17230401_SNP [dm3] 3R_21404679_SNP [dm6]	G	A	1.249e^-4	0.991	SYNONYMOUS_CODING CG7907	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	24225173	3R_24225173_SNP [dm3] 3R_28399451_SNP [dm6]	G	A	1.250e^-4	0.991	INTERGENIC
2R	8502734	2R_8502734_SNP [dm3] 2R_12615229_SNP [dm6]	C	G	1.259e^-4	0.991	UPSTREAM Galphaq INTRON Galphaq & 1 other	TF binding site mE1_TFBS_sens
3L	16961315	3L_16961315_SNP [dm3] 3L_16968215_SNP [dm6]	C	G	1.265e^-4	0.991	UTR_3_PRIME Nc73EF DOWNSTREAM Nc73EF
2L	5759543	2L_5759543_SNP [dm3] 2L_5759543_SNP [dm6]	C	T	1.272e^-4	0.991	SYNONYMOUS_CODING CG11030	TF binding site mE1_TFBS_cad
X	18460067	X_18460067_SNP [dm3] X_18566034_SNP [dm6]	C	T	1.272e^-4	0.991	UPSTREAM Bx DOWNSTREAM tRNA:CR32546 INTRON Bx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	21310984	3L_21310984_SNP [dm3] 3L_21317884_SNP [dm6]	C	T	1.278e^-4	0.991	SYNONYMOUS_CODING Pc UPSTREAM Rab26 DOWNSTREAM CR45674	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
3R	17000224	3R_17000224_SNP [dm3] 3R_21174502_SNP [dm6]	T	C	1.280e^-4	0.991	SYNONYMOUS_CODING SNF4Agamma INTRON SNF4Agamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23487745	3R_23487745_SNP [dm3] 3R_27662023_SNP [dm6]	C	T	1.286e^-4	0.991	UPSTREAM unc80 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24231292	3R_24231292_SNP [dm3] 3R_28405570_SNP [dm6]	C	T	1.293e^-4	0.991	INTERGENIC
3L	3924563	3L_3924563_SNP [dm3] 3L_3924563_SNP [dm6]	C	T	1.296e^-4	0.991	INTRON Eip63F-1
2R	18474284	2R_18474284_SNP [dm3] 2R_22586779_SNP [dm6]	A	C	1.302e^-4	0.991	INTRON dnr1
X	3215026	X_3215026_SNP [dm3] X_3320993_SNP [dm6]	G	A	1.306e^-4	0.991	INTRON dnc & 1 other
2L	12730337	2L_12730337_SNP [dm3] 2L_12730337_SNP [dm6]	T	C	1.316e^-4	0.991	INTRON MRP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15254537	3L_15254537_SNP [dm3] 3L_15261437_SNP [dm6]	T	C	1.317e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3R	4216030	3R_4216030_SNP [dm3] 3R_8390308_SNP [dm6]	G	A	1.323e^-4	0.991	INTRON CG45263
X	21889592	X_21889592_SNP [dm3] X_22487756_SNP [dm6]	G	C	1.338e^-4	0.991	SYNONYMOUS_CODING l_1_G0196 DOWNSTREAM CR43493 & 1 other
3R	18399628	3R_18399628_SNP [dm3] 3R_22573906_SNP [dm6]	G	A	1.341e^-4	0.991	INTRON CG33110
X	18460603	X_18460603_SNP [dm3] X_18566570_SNP [dm6]	C	G	1.342e^-4	0.991	SYNONYMOUS_CODING Bx DOWNSTREAM tRNA:CR32546 INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18460626	X_18460626_SNP [dm3] X_18566593_SNP [dm6]	A	G	1.352e^-4	0.991	NON_SYNONYMOUS_CODING Bx DOWNSTREAM tRNA:CR32546 INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13426832	2R_13426832_SNP [dm3] 2R_17539327_SNP [dm6]	A	C	1.367e^-4	0.991	NON_SYNONYMOUS_CODING CG43370 DOWNSTREAM eIF3-S9	TF binding site mE1_TFBS_cad
X	19006684	X_19006684_SNP [dm3] X_19112651_SNP [dm6]	C	T	1.371e^-4	0.991	INTERGENIC
3L	12834469	3L_12834469_INS [dm3] 3L_12841369_INS [dm6]	A	AA	1.371e^-4	0.991	INTRON CG10960
3R	20622730	3R_20622730_SNP [dm3] 3R_24797008_SNP [dm6]	T	C	1.377e^-4	0.991	SYNONYMOUS_CODING Ets96B DOWNSTREAM Ude	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5059440	3L_5059440_SNP [dm3] 3L_5059440_SNP [dm6]	A	T	1.383e^-4	0.991	INTRON Con
3L	7715586	3L_7715586_SNP [dm3] 3L_7722486_SNP [dm6]	T	G	1.399e^-4	0.991	SYNONYMOUS_CODING CG7457 INTRON CG32373
2L	966939	2L_966939_SNP [dm3] 2L_966939_SNP [dm6]	C	A	1.403e^-4	0.991	INTERGENIC
2R	15383852	2R_15383852_SNP [dm3] 2R_19496347_SNP [dm6]	C	A	1.406e^-4	0.991	SYNONYMOUS_CODING hpo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	845291	3L_845291_SNP [dm3] 3L_845291_SNP [dm6]	G	A	1.406e^-4	0.991	SYNONYMOUS_CODING CG13889	TF binding site mE1_TFBS_chinmo
2L	10561042	2L_10561042_SNP [dm3] 2L_10561042_SNP [dm6]	A	C	1.411e^-4	0.991	INTRON Trim9
3R	13293803	3R_13293803_SNP [dm3] 3R_17468081_SNP [dm6]	C	G	1.413e^-4	0.991	INTERGENIC
3L	9593446	3L_9593446_SNP [dm3] 3L_9600346_SNP [dm6]	C	T	1.416e^-4	0.991	DOWNSTREAM CG3088 & 1 other INTERGENIC
2L	18202677	2L_18202677_SNP [dm3] 2L_18202677_SNP [dm6]	T	C	1.421e^-4	0.991	INTRON CG42750	TF binding site mE1_TFBS_cad
3L	4212824	3L_4212824_SNP [dm3] 3L_4212824_SNP [dm6]	T	A	1.427e^-4	0.991	INTRON CG43367 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16556337	3L_16556337_DEL [dm3] 3L_16563237_DEL [dm6]	ATGA	A	1.438e^-4	0.991	DOWNSTREAM Mipp1 INTERGENIC	TF binding site mE1_TFBS_bab1
2R	17723768	2R_17723768_SNP [dm3] 2R_21836263_SNP [dm6]	T	A	1.439e^-4	0.991	SYNONYMOUS_CODING CG4377
3R	18585480	3R_18585480_SNP [dm3] 3R_22759758_SNP [dm6]	A	T	1.452e^-4	0.991	SYNONYMOUS_CODING CG4725 INTRON Usp12-46 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2581910	2L_2581910_SNP [dm3] 2L_2581910_SNP [dm6]	T	G	1.466e^-4	0.991	SYNONYMOUS_CODING Drp1 DOWNSTREAM Arpc5	TF binding site mE1_TFBS_sens
X	10628293	X_10628293_SNP [dm3] X_10734260_SNP [dm6]	G	C	1.472e^-4	0.991	INTRON CG32676
2L	10560881	2L_10560881_SNP [dm3] 2L_10560881_SNP [dm6]	T	G	1.472e^-4	0.991	INTRON Trim9
2L	7088810	2L_7088810_SNP [dm3] 2L_7088810_SNP [dm6]	C	A	1.476e^-4	0.991	INTERGENIC
2L	7387685	2L_7387685_DEL [dm3] 2L_7387685_DEL [dm6]	AGTACTATG	A	1.481e^-4	0.991	UPSTREAM gudu INTRON CG5149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	2834218	3L_2834218_SNP [dm3] 3L_2834218_SNP [dm6]	G	A	1.489e^-4	0.991	INTRON CG43444
X	11335061	X_11335061_SNP [dm3] X_11441028_SNP [dm6]	C	T	1.494e^-4	0.991	INTRON Evi5
3R	26169686	3R_26169686_SNP [dm3] 3R_30343964_SNP [dm6]	A	G	1.495e^-4	0.991	INTRON hdc	TF binding site BDTNP1_TFBS_dl
3R	4927280	3R_4927280_SNP [dm3] 3R_9101558_SNP [dm6]	C	T	1.499e^-4	0.991	INTRON pum
3R	23857495	3R_23857495_SNP [dm3] 3R_28031773_SNP [dm6]	T	G	1.507e^-4	0.991	INTRON CG34362
3L	8356867	3L_8356867_SNP [dm3] 3L_8363767_SNP [dm6]	G	T	1.514e^-4	0.991	INTERGENIC
2L	7559208	2L_7559208_SNP [dm3] 2L_7559208_SNP [dm6]	T	C	1.516e^-4	0.991	INTRON RapGAP1
X	12741060	X_12741060_SNP [dm3] X_12847027_SNP [dm6]	A	T	1.522e^-4	0.991	INTRON Pde9
X	12006388	X_12006388_SNP [dm3] X_12112355_SNP [dm6]	T	C	1.533e^-4	0.991	SYNONYMOUS_CODING CG2750 INTRON CR43960 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18001550	2L_18001550_SNP [dm3] 2L_18001550_SNP [dm6]	C	T	1.537e^-4	0.991	INTERGENIC
3L	17815597	3L_17815597_SNP [dm3] 3L_17822497_SNP [dm6]	T	A	1.548e^-4	0.991	UPSTREAM Grd INTRON Ir75c
2L	7089185	2L_7089185_SNP [dm3] 2L_7089185_SNP [dm6]	T	C	1.561e^-4	0.991	INTERGENIC
X	18460582	X_18460582_SNP [dm3] X_18566549_SNP [dm6]	C	G	1.563e^-4	0.991	SYNONYMOUS_CODING Bx DOWNSTREAM tRNA:CR32546 INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12957663	3R_12957663_SNP [dm3] 3R_17131941_SNP [dm6]	G	A	1.576e^-4	0.991	SYNONYMOUS_CODING CG4053 UPSTREAM CG31266	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	16999055	3R_16999055_SNP [dm3] 3R_21173333_SNP [dm6]	C	G	1.576e^-4	0.991	INTRON SNF4Agamma
2L	5814084	2L_5814084_SNP [dm3] 2L_5814084_SNP [dm6]	C	T	1.597e^-4	0.991	INTERGENIC
3R	24204176	3R_24204176_SNP [dm3] 3R_28378454_SNP [dm6]	G	A	1.611e^-4	0.991	INTERGENIC
2L	3421358	2L_3421358_SNP [dm3] 2L_3421358_SNP [dm6]	T	C	1.615e^-4	0.991	INTRON pgant2
3L	15043073	3L_15043073_SNP [dm3] 3L_15049973_SNP [dm6]	G	C	1.636e^-4	0.991	NON_SYNONYMOUS_CODING CG18581 UPSTREAM CG43678 DOWNSTREAM CG12310 & 1 other INTRON Sytbeta	TF binding site BDTNP1_TFBS_twi
2R	17176261	2R_17176261_SNP [dm3] 2R_21288756_SNP [dm6]	C	T	1.639e^-4	0.991	SYNONYMOUS_CODING CG10505	TF binding site mE1_TFBS_chinmo
3L	5136146	3L_5136146_SNP [dm3] 3L_5143046_SNP [dm6]	T	C	1.647e^-4	0.991	INTRON CG4623
X	15074960	X_15074960_SNP [dm3] X_15180927_SNP [dm6]	C	T	1.648e^-4	0.991	SYNONYMOUS_CODING CG43737	TF binding site mE1_TFBS_chinmo
2L	20881515	2L_20881515_SNP [dm3] 2L_20881515_SNP [dm6]	G	A	1.655e^-4	0.991	INTRON sky & 1 other
3L	10432389	3L_10432389_SNP [dm3] 3L_10439289_SNP [dm6]	A	G	1.668e^-4	0.991	INTERGENIC	transposable element FlyBase
3R	26805556	3R_26805556_SNP [dm3] 3R_30979834_SNP [dm6]	G	T	1.677e^-4	0.991	INTRON 5-HT7
2R	3573441	2R_3573441_SNP [dm3] 2R_7685936_SNP [dm6]	A	C	1.679e^-4	0.991	INTRON CG1399
3L	837495	3L_837495_SNP [dm3] 3L_837495_SNP [dm6]	A	G	1.682e^-4	0.991	UTR_5_PRIME CG13901 UPSTREAM CG13887 DOWNSTREAM CG42554	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2R	4337153	2R_4337153_SNP [dm3] 2R_8449648_SNP [dm6]	C	T	1.695e^-4	0.991	UTR_3_PRIME Cyp4e1 DOWNSTREAM Mal-A1
3L	16234987	3L_16234987_SNP [dm3] 3L_16241887_SNP [dm6]	A	G	1.698e^-4	0.991	INTERGENIC
2L	13137692	2L_13137692_SNP [dm3] 2L_13137692_SNP [dm6]	T	A	1.706e^-4	0.991	INTERGENIC
3R	23487754	3R_23487754_SNP [dm3] 3R_27662032_SNP [dm6]	C	T	1.713e^-4	0.991	UPSTREAM unc80 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25832991	3R_25832991_SNP [dm3] 3R_30007269_SNP [dm6]	C	T	1.715e^-4	0.991	SYNONYMOUS_CODING CG7912 INTRON Nlp
3L	7642366	3L_7642366_SNP [dm3] 3L_7649266_SNP [dm6]	A	C	1.720e^-4	0.991	INTERGENIC
3L	329161	3L_329161_SNP [dm3] 3L_329161_SNP [dm6]	T	C	1.734e^-4	0.991	DOWNSTREAM mthl9 INTRON Ptpmeg	TF binding site BDTNP1_TFBS_dl
X	9121129	X_9121129_SNP [dm3] X_9227096_SNP [dm6]	C	T	1.743e^-4	0.991	UPSTREAM Gr8a DOWNSTREAM CG15370 INTERGENIC
2R	6126259	2R_6126259_SNP [dm3] 2R_10238754_SNP [dm6]	T	C	1.758e^-4	0.991	UPSTREAM CR45265 INTRON Hdc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	16138348	3L_16138348_SNP [dm3] 3L_16145248_SNP [dm6]	T	C	1.765e^-4	0.991	INTRON CG5151
3R	17020888	3R_17020888_SNP [dm3] 3R_21195166_SNP [dm6]	C	A	1.765e^-4	0.991	INTRON SNF4Agamma
3R	24231283	3R_24231283_SNP [dm3] 3R_28405561_SNP [dm6]	T	C	1.767e^-4	0.991	INTERGENIC
2L	3111095	2L_3111095_SNP [dm3] 2L_3111095_SNP [dm6]	C	G	1.775e^-4	0.991	DOWNSTREAM PpD6 INTRON toc
3L	9593448	3L_9593448_SNP [dm3] 3L_9600348_SNP [dm6]	C	T	1.776e^-4	0.991	DOWNSTREAM CG3088 & 1 other INTERGENIC
3R	14683178	3R_14683178_SNP [dm3] 3R_18857456_SNP [dm6]	G	A	1.778e^-4	0.991	INTERGENIC
3R	8901716	3R_8901716_INS [dm3] 3R_13075994_INS [dm6]	T	TT	1.790e^-4	0.991	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3079503	2L_3079503_SNP [dm3] 2L_3079503_SNP [dm6]	G	A	1.809e^-4	0.991	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	9345022	2R_9345022_SNP [dm3] 2R_13457517_SNP [dm6]	C	A	1.825e^-4	0.991	SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	7526507	X_7526507_SNP [dm3] X_7632474_SNP [dm6]	C	T	1.826e^-4	0.991	INTRON ct
3R	9945886	3R_9945886_SNP [dm3] 3R_14120164_SNP [dm6]	C	T	1.835e^-4	0.991	SYNONYMOUS_CODING Abi	TF binding site mE1_TFBS_cad
3L	14388810	3L_14388810_SNP [dm3] 3L_14395710_SNP [dm6]	A	C	1.837e^-4	0.991	INTERGENIC
3L	11363500	3L_11363500_SNP [dm3] 3L_11370400_SNP [dm6]	T	G	1.843e^-4	0.991	INTERGENIC
3L	12781308	3L_12781308_SNP [dm3] 3L_12788208_SNP [dm6]	C	A	1.879e^-4	0.991	INTRON Atg1
2L	6573085	2L_6573085_SNP [dm3] 2L_6573085_SNP [dm6]	A	G	1.883e^-4	0.991	INTRON CG11319
3R	4922947	3R_4922947_SNP [dm3] 3R_9097225_SNP [dm6]	C	A	1.885e^-4	0.991	INTRON pum
2L	3511480	2L_3511480_SNP [dm3] 2L_3511480_SNP [dm6]	C	A	1.900e^-4	0.991	NON_SYNONYMOUS_CODING CG33123	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	14388884	3L_14388884_SNP [dm3] 3L_14395784_SNP [dm6]	T	C	1.901e^-4	0.991	INTERGENIC
3R	15302294	3R_15302294_DEL [dm3] 3R_19476572_DEL [dm6]	TT	T	1.905e^-4	0.991	UPSTREAM Dys INTRON Dys	TF binding site mE1_TFBS_inv
2R	12940182	2R_12940182_SNP [dm3] 2R_17052677_SNP [dm6]	T	C	1.908e^-4	0.991	NON_SYNONYMOUS_CODING CG9646 INTRON CG9646	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13117442	2L_13117442_SNP [dm3] 2L_13117442_SNP [dm6]	T	A	1.912e^-4	0.991	INTERGENIC
3R	4927311	3R_4927311_SNP [dm3] 3R_9101589_SNP [dm6]	C	T	1.918e^-4	0.991	INTRON pum
3R	15913652	3R_15913652_SNP [dm3] 3R_20087930_SNP [dm6]	C	G	1.927e^-4	0.991	INTERGENIC
X	5156827	X_5156827_DEL [dm3] X_5262794_DEL [dm6]	TCGT	T	1.930e^-4	0.991	INTERGENIC
2L	5085807	2L_5085807_SNP [dm3] 2L_5085807_SNP [dm6]	A	C	1.941e^-4	0.991	INTRON pgant5
3L	14175488	3L_14175488_SNP [dm3] 3L_14182388_SNP [dm6]	C	T	1.945e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	7095110	3R_7095110_SNP [dm3] 3R_11269388_SNP [dm6]	T	C	1.947e^-4	0.991	DOWNSTREAM CR31386 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	14924728	3R_14924728_SNP [dm3] 3R_19099006_SNP [dm6]	T	A	1.951e^-4	0.991	INTRON CG6040	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	9222983	X_9222983_SNP [dm3] X_9328950_SNP [dm6]	T	A	1.959e^-4	0.991	DOWNSTREAM CG34450 INTRON CG34449
2L	10659869	2L_10659869_SNP [dm3] 2L_10659869_SNP [dm6]	G	T	1.959e^-4	0.991	INTERGENIC
3R	11595843	3R_11595843_SNP [dm3] 3R_15770121_SNP [dm6]	A	C	1.962e^-4	0.991	INTERGENIC
3R	14889079	3R_14889079_INS [dm3] 3R_19063357_INS [dm6]	C	CC	1.963e^-4	0.991	INTRON cdi
3L	10932506	3L_10932506_SNP [dm3] 3L_10939406_SNP [dm6]	A	C	1.966e^-4	0.991	INTERGENIC
X	7453584	X_7453584_SNP [dm3] X_7559551_SNP [dm6]	C	T	1.968e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	7031926	2L_7031926_SNP [dm3] 2L_7031926_SNP [dm6]	G	A	1.969e^-4	0.991	SYNONYMOUS_CODING Rab30 UPSTREAM CG11266	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	1555590	3L_1555590_SNP [dm3] 3L_1555590_SNP [dm6]	C	T	1.972e^-4	0.991	SYNONYMOUS_CODING CG12099 DOWNSTREAM Cct2	TF binding site mE1_TFBS_cad
2R	8251385	2R_8251385_SNP [dm3] 2R_12363880_SNP [dm6]	G	T	1.975e^-4	0.991	DOWNSTREAM CG30043 EXON CR33013	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	12957792	3R_12957792_SNP [dm3] 3R_17132070_SNP [dm6]	T	C	1.984e^-4	0.991	SYNONYMOUS_CODING CG4053 UPSTREAM CG31266	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	18576698	2L_18576698_SNP [dm3] 2L_18576698_SNP [dm6]	A	T	1.990e^-4	0.991	INTRON Pde11
3R	17089606	3R_17089606_SNP [dm3] 3R_21263884_SNP [dm6]	C	T	1.997e^-4	0.991	DOWNSTREAM ETHR INTRON ETHR
2R	1733786	2R_1733786_SNP [dm3] 2R_5846281_SNP [dm6]	C	A	2.009e^-4	0.991	INTRON dpr12
2L	18576240	2L_18576240_SNP [dm3] 2L_18576240_SNP [dm6]	T	A	2.015e^-4	0.991	INTRON Pde11
2R	4867877	2R_4867877_SNP [dm3] 2R_8980372_SNP [dm6]	A	C	2.022e^-4	0.991	INTRON CG8213
3L	16040815	3L_16040815_SNP [dm3] 3L_16047715_SNP [dm6]	C	G	2.023e^-4	0.991	UPSTREAM th INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
2R	8259091	2R_8259091_SNP [dm3] 2R_12371586_SNP [dm6]	C	A	2.024e^-4	0.991	UPSTREAM CG13160 DOWNSTREAM CG33012 INTERGENIC
2L	12991953	2L_12991953_SNP [dm3] 2L_12991953_SNP [dm6]	G	T	2.024e^-4	0.991	INTERGENIC
3R	13196801	3R_13196801_SNP [dm3] 3R_17371079_SNP [dm6]	A	C	2.038e^-4	0.991	DOWNSTREAM CR44256 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12730332	2L_12730332_SNP [dm3] 2L_12730332_SNP [dm6]	T	C	2.040e^-4	0.991	INTRON MRP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14228092	2L_14228092_SNP [dm3] 2L_14228092_SNP [dm6]	C	T	2.041e^-4	0.991	INTRON Dyrk2
3L	3003974	3L_3003974_SNP [dm3] 3L_3003974_SNP [dm6]	T	A	2.042e^-4	0.991	INTRON FMRFaR
3L	7081523	3L_7081523_SNP [dm3] 3L_7088423_SNP [dm6]	T	C	2.047e^-4	0.991	SYNONYMOUS_CODING Cpr65Eb
3L	837693	3L_837693_SNP [dm3] 3L_837693_SNP [dm6]	A	C	2.055e^-4	0.991	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2R	14086502	2R_14086502_SNP [dm3] 2R_18198997_SNP [dm6]	C	T	2.057e^-4	0.991	INTERGENIC
3L	16040968	3L_16040968_SNP [dm3] 3L_16047868_SNP [dm6]	T	G	2.061e^-4	0.991	INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	18050637	3R_18050637_SNP [dm3] 3R_22224915_SNP [dm6]	T	A	2.062e^-4	0.991	INTRON SKIP
3L	9561852	3L_9561852_SNP [dm3] 3L_9568752_SNP [dm6]	G	C	2.068e^-4	0.991	INTRON CG42673
2L	10563121	2L_10563121_SNP [dm3] 2L_10563121_SNP [dm6]	G	A	2.090e^-4	0.991	INTRON Trim9
3R	8346633	3R_8346633_SNP [dm3] 3R_12520911_SNP [dm6]	G	A	2.100e^-4	0.991	INTRON Octbeta3R
2R	9680318	2R_9680318_SNP [dm3] 2R_13792813_SNP [dm6]	G	T	2.107e^-4	0.991	DOWNSTREAM CR43811 INTERGENIC
3L	6630087	3L_6630087_SNP [dm3] 3L_6636987_SNP [dm6]	C	T	2.125e^-4	0.991	INTERGENIC
X	3214980	X_3214980_SNP [dm3] X_3320947_SNP [dm6]	A	T	2.145e^-4	0.991	INTRON dnc & 1 other
3R	14071070	3R_14071070_DEL [dm3] 3R_18245348_DEL [dm6]	CGTCCCAATATTTC...	C	2.145e^-4	0.991	INTRON 14-3-3epsilon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	10649235	3L_10649235_DEL [dm3] 3L_10656135_DEL [dm6]	TT	T	2.151e^-4	0.991	INTRON CG32066	TF binding site BDTNP1_TFBS_twi
2R	16872272	2R_16872272_SNP [dm3] 2R_20984767_SNP [dm6]	G	A	2.175e^-4	0.991	SYNONYMOUS_CODING CG15651 DOWNSTREAM CG9313	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2390908	2L_2390908_SNP [dm3] 2L_2390908_SNP [dm6]	G	A	2.204e^-4	0.991	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
3L	18713247	3L_18713247_SNP [dm3] 3L_18720147_SNP [dm6]	A	C	2.205e^-4	0.991	INTERGENIC
3L	669526	3L_669526_SNP [dm3] 3L_669526_SNP [dm6]	T	G	2.211e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	8209863	3L_8209863_SNP [dm3] 3L_8216763_SNP [dm6]	A	G	2.211e^-4	0.991	DOWNSTREAM CG8012 INTERGENIC
2R	15224147	2R_15224147_SNP [dm3] 2R_19336642_SNP [dm6]	T	C	2.216e^-4	0.991	INTRON Rgk1
3L	8039182	3L_8039182_SNP [dm3] 3L_8046082_SNP [dm6]	G	A	2.218e^-4	0.991	INTRON nmo
3R	17248735	3R_17248735_SNP [dm3] 3R_21423013_SNP [dm6]	T	A	2.223e^-4	0.991	INTRON lbl
2L	11371106	2L_11371106_SNP [dm3] 2L_11371106_SNP [dm6]	C	T	2.232e^-4	0.991	INTRON salr
2R	4337185	2R_4337185_SNP [dm3] 2R_8449680_SNP [dm6]	A	G	2.232e^-4	0.991	UTR_3_PRIME Cyp4e1 & 1 other
2R	15016269	2R_15016269_DEL [dm3] 2R_19128764_DEL [dm6]	TTGCTATCT	T	2.233e^-4	0.991	UPSTREAM botv INTRON CG15117
3R	14686419	3R_14686419_SNP [dm3] 3R_18860697_SNP [dm6]	T	G	2.236e^-4	0.991	INTERGENIC
3R	4307553	3R_4307553_SNP [dm3] 3R_8481831_SNP [dm6]	C	A	2.246e^-4	0.991	INTERGENIC
2R	8251388	2R_8251388_SNP [dm3] 2R_12363883_SNP [dm6]	T	C	2.246e^-4	0.991	DOWNSTREAM CG30043 EXON CR33013	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	12633012	2R_12633012_SNP [dm3] 2R_16745507_SNP [dm6]	C	T	2.257e^-4	0.991	UTR_3_PRIME CG15617 UPSTREAM Sfp53D	TF binding site mE1_TFBS_cad
2L	6221614	2L_6221614_DEL [dm3] 2L_6221614_DEL [dm6]	GAA	G	2.271e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6791783	3R_6791783_SNP [dm3] 3R_10966061_SNP [dm6]	A	C	2.278e^-4	0.991	INTERGENIC
3R	9451639	3R_9451639_SNP [dm3] 3R_13625917_SNP [dm6]	T	A	2.279e^-4	0.991	INTERGENIC
2L	3937364	2L_3937364_SNP [dm3] 2L_3937364_SNP [dm6]	A	C	2.280e^-4	0.991	INTRON fred
X	17368508	X_17368508_SNP [dm3] X_17474475_SNP [dm6]	A	G	2.280e^-4	0.991	INTRON CG43658
X	10292209	X_10292209_SNP [dm3] X_10398176_SNP [dm6]	T	C	2.284e^-4	0.991	INTRON flw
2R	13625466	2R_13625466_SNP [dm3] 2R_17737961_SNP [dm6]	T	C	2.286e^-4	0.991	NON_SYNONYMOUS_CODING CG6401 UPSTREAM CG6406
2L	12211559	2L_12211559_SNP [dm3] 2L_12211559_SNP [dm6]	G	T	2.311e^-4	0.991	INTRON aret
3L	1385378	3L_1385378_SNP [dm3] 3L_1385378_SNP [dm6]	C	T	2.318e^-4	0.991	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	8887281	3L_8887281_SNP [dm3] 3L_8894181_SNP [dm6]	A	C	2.329e^-4	0.991	UTR_3_PRIME Mcm7 DOWNSTREAM TrpA1
3L	21258065	3L_21258065_INS [dm3] 3L_21264965_INS [dm6]	A	AA	2.338e^-4	0.991	UTR_3_PRIME Eip78C
3L	9593441	3L_9593441_SNP [dm3] 3L_9600341_SNP [dm6]	G	A	2.338e^-4	0.991	UTR_3_PRIME CG3222 DOWNSTREAM CG3088
2L	4077502	2L_4077502_SNP [dm3] 2L_4077502_SNP [dm6]	G	T	2.343e^-4	0.991	INTRON ed
3R	6385694	3R_6385694_INS [dm3] 3R_10559972_INS [dm6]	G	GG	2.366e^-4	0.991	INTRON hth	TF binding site BDTNP1_TFBS_dl
3L	23117633	3L_23117633_SNP [dm3] 3L_23124533_SNP [dm6]	G	T	2.369e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_cad transposable element FlyBase
X	9222982	X_9222982_SNP [dm3] X_9328949_SNP [dm6]	C	T	2.372e^-4	0.991	DOWNSTREAM CG34450 INTRON CG34449
3R	22105728	3R_22105728_SNP [dm3] 3R_26280006_SNP [dm6]	A	G	2.382e^-4	0.991	INTERGENIC
2L	11208105	2L_11208105_SNP [dm3] 2L_11208105_SNP [dm6]	G	T	2.384e^-4	0.991	INTERGENIC
X	21893119	X_21893119_SNP [dm3] X_22491283_SNP [dm6]	A	T	2.407e^-4	0.991	UPSTREAM l_1_G0196 & 1 other INTRON l_1_G0196
3L	3539958	3L_3539958_SNP [dm3] 3L_3539958_SNP [dm6]	T	C	2.407e^-4	0.991	INTRON Eip63E
2L	9468082	2L_9468082_SNP [dm3] 2L_9468082_SNP [dm6]	A	G	2.409e^-4	0.991	INTERGENIC
X	19534695	X_19534695_SNP [dm3] X_19640662_SNP [dm6]	C	A	2.414e^-4	0.991	UTR_3_PRIME Rcd-1 DOWNSTREAM CG12237	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12331701	2R_12331701_SNP [dm3] 2R_16444196_SNP [dm6]	G	A	2.423e^-4	0.991	INTRON CG4409
2R	14146045	2R_14146045_SNP [dm3] 2R_18258540_SNP [dm6]	T	C	2.425e^-4	0.991	DOWNSTREAM CR44421 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	4616297	3R_4616297_DEL [dm3] 3R_8790575_DEL [dm6]	GATGT	G	2.428e^-4	0.991	UTR_5_PRIME Pif1B & 1 other INTRON Pif1A & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8609008	2L_8609008_SNP [dm3] 2L_8609008_SNP [dm6]	A	T	2.429e^-4	0.991	INTRON Sema-1a
3R	22164682	3R_22164682_SNP [dm3] 3R_26338960_SNP [dm6]	A	G	2.437e^-4	0.991	INTRON CG33970
2R	4869303	2R_4869303_DEL [dm3] 2R_8981798_DEL [dm6]	CGTCG	C	2.445e^-4	0.991	INTRON CG8213
3R	6848591	3R_6848591_SNP [dm3] 3R_11022869_SNP [dm6]	G	C	2.452e^-4	0.991	INTRON CG34114	TF binding site mE1_TFBS_ttk
3L	329786	3L_329786_SNP [dm3] 3L_329786_SNP [dm6]	G	A	2.459e^-4	0.991	DOWNSTREAM mthl9 INTRON Ptpmeg	TF binding site BDTNP1_TFBS_dl
3R	24673403	3R_24673403_SNP [dm3] 3R_28847681_SNP [dm6]	A	C	2.460e^-4	0.991	INTRON spg
2R	10968250	2R_10968250_DEL [dm3] 2R_15080745_DEL [dm6]	AG	A	2.471e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_inv
2L	19732103	2L_19732103_SNP [dm3] 2L_19732103_SNP [dm6]	G	A	2.478e^-4	0.991	UTR_3_PRIME CG10462 DOWNSTREAM Lar
X	8151621	X_8151621_DEL [dm3] X_8257588_DEL [dm6]	GGGTTTG	G	2.501e^-4	0.991	INTRON CG1632
2R	8276571	2R_8276571_SNP [dm3] 2R_12389066_SNP [dm6]	A	G	2.506e^-4	0.991	SYNONYMOUS_CODING Cpr49Ac UTR_3_PRIME Cpr49Ac	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	14560365	X_14560365_SNP [dm3] X_14666332_SNP [dm6]	C	T	2.513e^-4	0.991	INTERGENIC
2R	4859819	2R_4859819_SNP [dm3] 2R_8972314_SNP [dm6]	G	T	2.514e^-4	0.991	SYNONYMOUS_CODING CG8213	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2R	17553599	2R_17553599_SNP [dm3] 2R_21666094_SNP [dm6]	A	G	2.518e^-4	0.991	SYNONYMOUS_CODING CG42364 UTR_3_PRIME CG42362 & 1 other UPSTREAM CG42365	TF binding site BDTNP1_TFBS_twi
2R	8309007	2R_8309007_SNP [dm3] 2R_12421502_SNP [dm6]	G	T	2.518e^-4	0.991	SYNONYMOUS_CODING CG8834	TF binding site mE1_TFBS_cad
2L	10558082	2L_10558082_SNP [dm3] 2L_10558082_SNP [dm6]	T	C	2.526e^-4	0.991	INTRON Trim9	TF binding site mE1_TFBS_inv
3L	3049934	3L_3049934_SNP [dm3] 3L_3049934_SNP [dm6]	G	T	2.531e^-4	0.991	UTR_3_PRIME Sk2 UPSTREAM CG32485	TF binding site mE1_TFBS_cad
3L	8328176	3L_8328176_DEL [dm3] 3L_8335076_DEL [dm6]	AATCCACGG	A	2.533e^-4	0.991	INTERGENIC
2R	14983071	2R_14983071_SNP [dm3] 2R_19095566_SNP [dm6]	T	C	2.550e^-4	0.991	SYNONYMOUS_CODING Ir56a INTRON 5-HT1A
3L	8544773	3L_8544773_SNP [dm3] 3L_8551673_SNP [dm6]	T	C	2.560e^-4	0.991	INTRON rhea
X	7534530	X_7534530_SNP [dm3] X_7640497_SNP [dm6]	A	G	2.560e^-4	0.991	INTRON ct
2R	12555464	2R_12555464_SNP [dm3] 2R_16667959_SNP [dm6]	T	A	2.564e^-4	0.991	UPSTREAM Picot INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17422852	2R_17422852_SNP [dm3] 2R_21535347_SNP [dm6]	C	A	2.567e^-4	0.991	DOWNSTREAM CG30286 INTRON Egfr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA
2L	13139091	2L_13139091_SNP [dm3] 2L_13139091_SNP [dm6]	C	G	2.576e^-4	0.991	INTERGENIC
X	7534447	X_7534447_SNP [dm3] X_7640414_SNP [dm6]	A	G	2.576e^-4	0.991	INTRON ct
3L	21311191	3L_21311191_SNP [dm3] 3L_21318091_SNP [dm6]	T	A	2.580e^-4	0.991	UPSTREAM Rab26 & 1 other DOWNSTREAM CR45674 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
3L	19451044	3L_19451044_SNP [dm3] 3L_19457944_SNP [dm6]	C	T	2.582e^-4	0.991	INTERGENIC
2L	10560877	2L_10560877_SNP [dm3] 2L_10560877_SNP [dm6]	A	G	2.589e^-4	0.991	INTRON Trim9
3L	837496	3L_837496_SNP [dm3] 3L_837496_SNP [dm6]	G	A	2.590e^-4	0.991	UTR_5_PRIME CG13901 UPSTREAM CG13887 DOWNSTREAM CG42554	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2L	17012308	2L_17012308_SNP [dm3] 2L_17012308_SNP [dm6]	C	T	2.590e^-4	0.991	SYNONYMOUS_CODING CG6304	TF binding site mE1_TFBS_HSA
3R	14334174	3R_14334174_DEL [dm3] 3R_18508452_DEL [dm6]	CT	C	2.595e^-4	0.991	INTRON fru
3L	18643254	3L_18643254_SNP [dm3] 3L_18650154_SNP [dm6]	A	G	2.598e^-4	0.991	INTRON MYPT-75D
3L	13181505	3L_13181505_SNP [dm3] 3L_13188405_SNP [dm6]	T	A	2.599e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	19089108	2R_19089108_SNP [dm3] 2R_23201585_SNP [dm6]	T	G	2.601e^-4	0.991	INTRON CG34371	TF binding site BDTNP1_TFBS_twi
3R	16925995	3R_16925995_SNP [dm3] 3R_21100273_SNP [dm6]	G	C	2.606e^-4	0.991	SYNONYMOUS_CODING CG7044	TF binding site mE1_TFBS_sens
X	13608231	X_13608231_SNP [dm3] X_13714198_SNP [dm6]	T	C	2.606e^-4	0.991	UTR_3_PRIME NnaD INTRON CG9940 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	20069852	2L_20069852_SNP [dm3] 2L_20069852_SNP [dm6]	G	A	2.607e^-4	0.991	UPSTREAM CR44907 DOWNSTREAM CG10730 INTRON bwa	TF binding site mE1_TFBS_cad
X	3214624	X_3214624_SNP [dm3] X_3320591_SNP [dm6]	T	C	2.609e^-4	0.991	INTRON dnc & 1 other
3L	23868998	3L_23868998_SNP [dm3] 3L_23875898_SNP [dm6]	T	C	2.611e^-4	0.991	INTRON CG40470
3L	5976879	3L_5976879_SNP [dm3] 3L_5983779_SNP [dm6]	A	T	2.616e^-4	0.991	DOWNSTREAM CR45440 EXON CR45439	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	12781341	3L_12781341_SNP [dm3] 3L_12788241_SNP [dm6]	A	C	2.617e^-4	0.991	SPLICE_SITE_REGION Atg1 INTRON Atg1
3L	11236588	3L_11236588_SNP [dm3] 3L_11243488_SNP [dm6]	C	T	2.618e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	821992	3L_821992_SNP [dm3] 3L_821992_SNP [dm6]	T	C	2.619e^-4	0.991	DOWNSTREAM CR43883 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	3673700	2L_3673700_SNP [dm3] 2L_3673700_SNP [dm6]	G	A	2.622e^-4	0.991	INTRON CG34340
2R	19976085	2R_19976085_DEL [dm3] 2R_24088562_DEL [dm6]	TTT	A	2.646e^-4	0.991	INTRON snama	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	3617214	3R_3617214_SNP [dm3] 3R_7791492_SNP [dm6]	G	C	2.653e^-4	0.991	INTRON CG10086
3L	23118855	3L_23118855_SNP [dm3] 3L_23125755_SNP [dm6]	A	T	2.655e^-4	0.991	UPSTREAM CG33217 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
X	18974412	X_18974412_DEL [dm3] X_19080379_DEL [dm6]	AATTGAATTCCAGGTACTAA...	A	2.661e^-4	0.991	INTERGENIC
X	14845219	X_14845219_SNP [dm3] X_14951186_SNP [dm6]	C	A	2.670e^-4	0.991	UTR_5_PRIME pdgy UPSTREAM pdgy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	16720896	3R_16720896_SNP [dm3] 3R_20895174_SNP [dm6]	A	T	2.671e^-4	0.991	UTR_3_PRIME CG10830
X	19342959	X_19342959_SNP [dm3] X_19448926_SNP [dm6]	G	A	2.694e^-4	0.991	INTRON kek5
3L	10300396	3L_10300396_SNP [dm3] 3L_10307296_SNP [dm6]	T	A	2.694e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8400564	3L_8400564_SNP [dm3] 3L_8407464_SNP [dm6]	A	C	2.696e^-4	0.991	SPLICE_SITE_REGION Oseg1 SYNONYMOUS_CODING Oseg1 DOWNSTREAM CG13667
X	21886990	X_21886990_DEL [dm3] X_22485154_DEL [dm6]	AA	A	2.708e^-4	0.991	INTRON Cp110
2L	9509187	2L_9509187_SNP [dm3] 2L_9509187_SNP [dm6]	A	G	2.714e^-4	0.991	INTRON CG33298
3L	16961305	3L_16961305_SNP [dm3] 3L_16968205_SNP [dm6]	G	A	2.716e^-4	0.991	UTR_3_PRIME Nc73EF DOWNSTREAM Nc73EF
2R	15015534	2R_15015534_SNP [dm3] 2R_19128029_SNP [dm6]	G	T	2.717e^-4	0.991	UPSTREAM CG15117 INTRON CG15117
X	11740253	X_11740253_SNP [dm3] X_11846220_SNP [dm6]	C	T	2.718e^-4	0.991	UPSTREAM CG15740 INTERGENIC	TF binding site BDTNP1_TFBS_sna
X	7535911	X_7535911_SNP [dm3] X_7641878_SNP [dm6]	A	C	2.719e^-4	0.991	INTRON ct
2L	3259374	2L_3259374_SNP [dm3] 2L_3259374_SNP [dm6]	G	A	2.723e^-4	0.991	INTERGENIC
X	22407641	X_22407641_SNP [dm3] X_23005805_SNP [dm6]	C	T	2.725e^-4	0.991	INTERGENIC	transposable element FlyBase
3L	13845358	3L_13845358_SNP [dm3] 3L_13852258_SNP [dm6]	T	C	2.746e^-4	0.991	SYNONYMOUS_CODING Hml	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21015697	3R_21015697_SNP [dm3] 3R_25189975_SNP [dm6]	C	T	2.752e^-4	0.991	SYNONYMOUS_CODING dan INTRON lobo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	16867234	3L_16867234_INS [dm3] 3L_16874134_INS [dm6]	G	GCCACAACATATGAATTGTT...	2.760e^-4	0.991	INTRON Lmpt
3L	5603735	3L_5603735_SNP [dm3] 3L_5610635_SNP [dm6]	C	T	2.770e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
2R	8790691	2R_8790691_SNP [dm3] 2R_12903186_SNP [dm6]	C	T	2.775e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3217576	X_3217576_SNP [dm3] X_3323543_SNP [dm6]	G	A	2.775e^-4	0.991	INTRON CR44886 & 1 other
X	13160394	X_13160394_SNP [dm3] X_13266361_SNP [dm6]	G	C	2.791e^-4	0.991	SYNONYMOUS_CODING HDAC4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	20525999	3L_20525999_SNP [dm3] 3L_20532899_SNP [dm6]	G	A	2.815e^-4	0.991	UPSTREAM CG13250 INTRON Rcd2
3R	12740857	3R_12740857_SNP [dm3] 3R_16915135_SNP [dm6]	A	G	2.817e^-4	0.991	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12781332	3L_12781332_DEL [dm3] 3L_12788232_DEL [dm6]	AAGAT	A	2.819e^-4	0.991	INTRON Atg1
3R	7532971	3R_7532971_SNP [dm3] 3R_11707249_SNP [dm6]	G	A	2.820e^-4	0.991	INTERGENIC
2L	5793659	2L_5793659_SNP [dm3] 2L_5793659_SNP [dm6]	T	A	2.826e^-4	0.991	INTRON CG9171
X	10834852	X_10834852_SNP [dm3] X_10940819_SNP [dm6]	T	C	2.832e^-4	0.991	INTRON Myo10A
2L	7085030	2L_7085030_SNP [dm3] 2L_7085030_SNP [dm6]	A	T	2.834e^-4	0.991	UPSTREAM Pvf2 INTERGENIC	TF binding site mE1_TFBS_Trl
X	9861020	X_9861020_SNP [dm3] X_9966987_SNP [dm6]	A	C	2.834e^-4	0.991	DOWNSTREAM CG43386 & 1 other INTRON CG43386
3R	10279228	3R_10279228_SNP [dm3] 3R_14453506_SNP [dm6]	T	C	2.835e^-4	0.991	INTRON cv-c
2R	8610612	2R_8610612_SNP [dm3] 2R_12723107_SNP [dm6]	A	T	2.837e^-4	0.991	INTRON CG42663
2L	16785877	2L_16785877_SNP [dm3] 2L_16785877_SNP [dm6]	C	T	2.847e^-4	0.991	INTRON Mhc	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10226948	2R_10226948_SNP [dm3] 2R_14339443_SNP [dm6]	A	C	2.848e^-4	0.991	INTRON Shroom
3R	17006842	3R_17006842_SNP [dm3] 3R_21181120_SNP [dm6]	A	T	2.866e^-4	0.991	UTR_5_PRIME SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18725331	3L_18725331_SNP [dm3] 3L_18732231_SNP [dm6]	T	A	2.869e^-4	0.991	INTERGENIC
2L	19732109	2L_19732109_SNP [dm3] 2L_19732109_SNP [dm6]	A	C	2.871e^-4	0.991	UTR_3_PRIME CG10462 DOWNSTREAM Lar
2L	2689337	2L_2689337_SNP [dm3] 2L_2689337_SNP [dm6]	T	A	2.876e^-4	0.991	INTRON CG31690
2L	2689373	2L_2689373_SNP [dm3] 2L_2689373_SNP [dm6]	T	C	2.876e^-4	0.991	INTRON CG31690
2L	2689375	2L_2689375_SNP [dm3] 2L_2689375_SNP [dm6]	T	C	2.876e^-4	0.991	INTRON CG31690
2L	10560935	2L_10560935_SNP [dm3] 2L_10560935_SNP [dm6]	G	A	2.876e^-4	0.991	INTRON Trim9
2R	14637042	2R_14637042_SNP [dm3] 2R_18749537_SNP [dm6]	A	C	2.877e^-4	0.991	INTRON Hs3st-A
3L	6387950	3L_6387950_SNP [dm3] 3L_6394850_SNP [dm6]	C	G	2.879e^-4	0.991	INTERGENIC
3L	18713138	3L_18713138_SNP [dm3] 3L_18720038_SNP [dm6]	T	C	2.883e^-4	0.991	INTERGENIC
3R	16912435	3R_16912435_SNP [dm3] 3R_21086713_SNP [dm6]	C	T	2.884e^-4	0.991	SYNONYMOUS_CODING RhoGAP93B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10440331	2L_10440331_SNP [dm3] 2L_10440331_SNP [dm6]	T	C	2.886e^-4	0.991	SYNONYMOUS_CODING CG13142	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10503991	X_10503991_SNP [dm3] X_10609958_SNP [dm6]	G	C	2.899e^-4	0.991	INTRON CG43347
3L	2627277	3L_2627277_SNP [dm3] 3L_2627277_SNP [dm6]	A	G	2.901e^-4	0.991	INTRON Pxn
2L	3271765	2L_3271765_SNP [dm3] 2L_3271765_SNP [dm6]	C	A	2.904e^-4	0.991	UTR_3_PRIME CG3347
3L	12805359	3L_12805359_SNP [dm3] 3L_12812259_SNP [dm6]	A	C	2.904e^-4	0.991	DOWNSTREAM CG10754 INTRON Sap130	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	4681172	X_4681172_SNP [dm3] X_4787139_SNP [dm6]	C	A	2.911e^-4	0.991	INTERGENIC
3R	20970805	3R_20970805_SNP [dm3] 3R_25145083_SNP [dm6]	A	G	2.920e^-4	0.991	INTERGENIC
X	14560388	X_14560388_DEL [dm3] X_14666355_DEL [dm6]	TTTGTCTGAC	T	2.921e^-4	0.991	INTERGENIC
2L	19732106	2L_19732106_SNP [dm3] 2L_19732106_SNP [dm6]	G	A	2.931e^-4	0.991	UTR_3_PRIME CG10462 DOWNSTREAM Lar
2L	11322404	2L_11322404_SNP [dm3] 2L_11322404_SNP [dm6]	C	T	2.933e^-4	0.991	INTERGENIC
X	1976446	X_1976446_SNP [dm3] X_2082413_SNP [dm6]	A	T	2.933e^-4	0.991	INTRON Unc-76	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	22589589	3R_22589589_SNP [dm3] 3R_26763867_SNP [dm6]	A	T	2.942e^-4	0.991	INTERGENIC
3R	18625881	3R_18625881_SNP [dm3] 3R_22800159_SNP [dm6]	T	A	2.944e^-4	0.991	INTERGENIC
3L	23869016	3L_23869016_SNP [dm3] 3L_23875916_SNP [dm6]	T	G	2.948e^-4	0.991	INTRON CG40470
2L	12600150	2L_12600150_SNP [dm3] 2L_12600150_SNP [dm6]	A	G	2.968e^-4	0.991	INTRON nub
3R	23856206	3R_23856206_SNP [dm3] 3R_28030484_SNP [dm6]	G	A	2.973e^-4	0.991	INTRON CG34362
2L	14015073	2L_14015073_SNP [dm3] 2L_14015073_SNP [dm6]	T	A	2.976e^-4	0.991	INTRON bgm
3R	23487569	3R_23487569_SNP [dm3] 3R_27661847_SNP [dm6]	C	A	2.988e^-4	0.991	UPSTREAM unc80 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	17963432	X_17963432_SNP [dm3] X_18069399_SNP [dm6]	C	G	2.989e^-4	0.991	SYNONYMOUS_CODING Dhc16F
2L	11872644	2L_11872644_SNP [dm3] 2L_11872644_SNP [dm6]	T	C	2.999e^-4	0.991	INTRON Pde1c
3R	10122895	3R_10122895_SNP [dm3] 3R_14297173_SNP [dm6]	A	C	3.008e^-4	0.991	INTRON CG12207
2L	1009053	2L_1009053_SNP [dm3] 2L_1009053_SNP [dm6]	A	G	3.008e^-4	0.991	UTR_3_PRIME IA-2
3L	8808942	3L_8808942_INS [dm3] 3L_8815842_INS [dm6]	T	TT	3.011e^-4	0.991	INTERGENIC
3R	14334181	3R_14334181_SNP [dm3] 3R_18508459_SNP [dm6]	T	C	3.017e^-4	0.991	INTRON fru
2R	2717461	2R_2717461_SNP [dm3] 2R_6829956_SNP [dm6]	G	T	3.024e^-4	0.991	NON_SYNONYMOUS_CODING CG15236	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	9020201	X_9020201_SNP [dm3] X_9126168_SNP [dm6]	T	C	3.031e^-4	0.991	SYNONYMOUS_CODING fend	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
X	12662593	X_12662593_SNP [dm3] X_12768560_SNP [dm6]	A	T	3.032e^-4	0.991	INTRON CG3812
2R	13625463	2R_13625463_SNP [dm3] 2R_17737958_SNP [dm6]	T	C	3.032e^-4	0.991	NON_SYNONYMOUS_CODING CG6401 UPSTREAM CG6406
X	9224695	X_9224695_SNP [dm3] X_9330662_SNP [dm6]	A	G	3.033e^-4	0.991	UPSTREAM CG34450 DOWNSTREAM CG34449 INTRON CG34449
3L	14430980	3L_14430980_SNP [dm3] 3L_14437880_SNP [dm6]	A	T	3.039e^-4	0.991	INTRON bbg
3L	14430993	3L_14430993_DEL [dm3] 3L_14437893_DEL [dm6]	GGG	G	3.039e^-4	0.991	INTRON bbg
2R	11765293	2R_11765293_SNP [dm3] 2R_15877788_SNP [dm6]	G	A	3.047e^-4	0.991	INTRON sli
2L	3889669	2L_3889669_SNP [dm3] 2L_3889669_SNP [dm6]	C	T	3.052e^-4	0.991	SYNONYMOUS_CODING capu UTR_5_PRIME capu UPSTREAM capu INTRON capu	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_kn mE1_TFBS_ttk
2L	11208210	2L_11208210_SNP [dm3] 2L_11208210_SNP [dm6]	C	T	3.057e^-4	0.991	INTERGENIC
3R	25527804	3R_25527804_SNP [dm3] 3R_29702082_SNP [dm6]	C	T	3.073e^-4	0.991	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8632475	3L_8632475_INS [dm3] 3L_8639375_INS [dm6]	A	AA	3.079e^-4	0.991	DOWNSTREAM Zasp66 INTERGENIC	TF binding site mE1_TFBS_cnc
3R	9880264	3R_9880264_SNP [dm3] 3R_14054542_SNP [dm6]	A	C	3.080e^-4	0.991	INTERGENIC
2R	1731367	2R_1731367_SNP [dm3] 2R_5843862_SNP [dm6]	C	A	3.088e^-4	0.991	INTRON dpr12
3L	8546441	3L_8546441_SNP [dm3] 3L_8553341_SNP [dm6]	G	C	3.091e^-4	0.991	INTRON rhea	TF binding site BDTNP1_TFBS_twi
X	15639389	X_15639389_SNP [dm3] X_15745356_SNP [dm6]	G	A	3.092e^-4	0.991	SYNONYMOUS_CODING CG8944
3R	14334184	3R_14334184_SNP [dm3] 3R_18508462_SNP [dm6]	A	T	3.092e^-4	0.991	INTRON fru
3R	14330291	3R_14330291_SNP [dm3] 3R_18504569_SNP [dm6]	A	G	3.099e^-4	0.991	UPSTREAM fru INTRON fru
3L	10300392	3L_10300392_SNP [dm3] 3L_10307292_SNP [dm6]	G	T	3.104e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	7528397	X_7528397_SNP [dm3] X_7634364_SNP [dm6]	T	C	3.112e^-4	0.991	INTRON ct
X	5838721	X_5838721_INS [dm3] X_5944688_INS [dm6]	A	AA	3.117e^-4	0.991	UTR_3_PRIME CG12728 UPSTREAM CG32756 DOWNSTREAM CG12728	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10159247	3R_10159247_SNP [dm3] 3R_14333525_SNP [dm6]	T	C	3.120e^-4	0.991	INTRON NK7.1
2L	4375192	2L_4375192_SNP [dm3] 2L_4375192_SNP [dm6]	G	A	3.124e^-4	0.991	INTRON Traf4	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	13509663	3L_13509663_SNP [dm3] 3L_13516563_SNP [dm6]	T	C	3.127e^-4	0.991	NON_SYNONYMOUS_CODING CG10710 DOWNSTREAM Liprin-beta	TF binding site mE1_TFBS_cad
3R	15731739	3R_15731739_SNP [dm3] 3R_19906017_SNP [dm6]	T	C	3.135e^-4	0.991	INTRON RhoGAP92B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna
2R	1747805	2R_1747805_SNP [dm3] 2R_5860300_SNP [dm6]	C	T	3.142e^-4	0.991	UTR_3_PRIME dpr12 DOWNSTREAM dpr12
2L	13139218	2L_13139218_SNP [dm3] 2L_13139218_SNP [dm6]	G	T	3.157e^-4	0.991	INTERGENIC
3R	16926070	3R_16926070_SNP [dm3] 3R_21100348_SNP [dm6]	G	A	3.158e^-4	0.991	SYNONYMOUS_CODING CG7044	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9880267	3R_9880267_SNP [dm3] 3R_14054545_SNP [dm6]	A	T	3.162e^-4	0.991	INTERGENIC
X	14514815	X_14514815_SNP [dm3] X_14620782_SNP [dm6]	A	G	3.177e^-4	0.991	SYNONYMOUS_CODING NetA
3L	4438967	3L_4438967_SNP [dm3] 3L_4438967_SNP [dm6]	G	T	3.185e^-4	0.991	DOWNSTREAM CG15021 INTERGENIC
X	19006456	X_19006456_SNP [dm3] X_19112423_SNP [dm6]	G	A	3.187e^-4	0.991	INTERGENIC
2L	7026225	2L_7026225_SNP [dm3] 2L_7026225_SNP [dm6]	T	G	3.206e^-4	0.991	SYNONYMOUS_CODING CG31908	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	16349253	3R_16349253_SNP [dm3] 3R_20523531_SNP [dm6]	T	C	3.206e^-4	0.991	INTERGENIC
3L	6580561	3L_6580561_SNP [dm3] 3L_6587461_SNP [dm6]	C	T	3.208e^-4	0.991	INTRON CG18769 & 1 other
2R	18579063	2R_18579063_SNP [dm3] 2R_22691558_SNP [dm6]	T	C	3.224e^-4	0.991	DOWNSTREAM robo EXON CR44764	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	4565949	3R_4565949_SNP [dm3] 3R_8740227_SNP [dm6]	C	A	3.225e^-4	0.991	INTRON CG9801	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	17020864	3R_17020864_SNP [dm3] 3R_21195142_SNP [dm6]	T	C	3.229e^-4	0.991	INTRON SNF4Agamma
3R	20882627	3R_20882627_SNP [dm3] 3R_25056905_SNP [dm6]	C	T	3.238e^-4	0.991	UPSTREAM Unc-13-4B & 1 other INTRON Unc-13-4B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	18479283	3L_18479283_SNP [dm3] 3L_18486183_SNP [dm6]	G	A	3.245e^-4	0.991	UTR_3_PRIME AstC-R2 DOWNSTREAM AstC-R2
2L	18576689	2L_18576689_SNP [dm3] 2L_18576689_SNP [dm6]	C	A	3.249e^-4	0.991	INTRON Pde11
3R	15141936	3R_15141936_SNP [dm3] 3R_19316214_SNP [dm6]	C	A	3.265e^-4	0.991	INTRON Dl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	8308053	2R_8308053_SNP [dm3] 2R_12420548_SNP [dm6]	A	C	3.269e^-4	0.991	UTR_3_PRIME CG8834 INTRON CG8834	TF binding site mE1_TFBS_cad
X	21892387	X_21892387_SNP [dm3] X_22490551_SNP [dm6]	G	T	3.269e^-4	0.991	INTRON l_1_G0196 & 1 other
3R	14334182	3R_14334182_SNP [dm3] 3R_18508460_SNP [dm6]	A	T	3.284e^-4	0.991	INTRON fru
X	5709040	X_5709040_DEL [dm3] X_5815007_DEL [dm6]	CT	C	3.288e^-4	0.991	UTR_3_PRIME CG15766
3L	10972275	3L_10972275_SNP [dm3] 3L_10979175_SNP [dm6]	G	C	3.300e^-4	0.991	UPSTREAM CR45745 INTERGENIC
3R	22163980	3R_22163980_SNP [dm3] 3R_26338258_SNP [dm6]	A	G	3.311e^-4	0.991	INTRON CG33970
2L	6127348	2L_6127348_SNP [dm3] 2L_6127348_SNP [dm6]	C	T	3.313e^-4	0.991	SYNONYMOUS_CODING WDR79 DOWNSTREAM CG42730 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	7768085	2L_7768085_SNP [dm3] 2L_7768085_SNP [dm6]	T	C	3.317e^-4	0.991	INTRON CG7191
3L	18999917	3L_18999917_SNP [dm3] 3L_19006817_SNP [dm6]	G	C	3.332e^-4	0.991	NON_SYNONYMOUS_CODING nkd INTRON nkd
3R	8514592	3R_8514592_SNP [dm3] 3R_12688870_SNP [dm6]	G	A	3.333e^-4	0.991	INTRON kar	TF binding site mE1_TFBS_chinmo
2L	7031962	2L_7031962_SNP [dm3] 2L_7031962_SNP [dm6]	G	C	3.337e^-4	0.991	SYNONYMOUS_CODING Rab30 UPSTREAM CG11266	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2L	4359074	2L_4359074_DEL [dm3] 2L_4359074_DEL [dm6]	CTC	C	3.337e^-4	0.991	INTERGENIC
3R	11594152	3R_11594152_SNP [dm3] 3R_15768430_SNP [dm6]	G	T	3.343e^-4	0.991	UPSTREAM CG5623 INTERGENIC
2L	13118866	2L_13118866_SNP [dm3] 2L_13118866_SNP [dm6]	C	T	3.351e^-4	0.991	UPSTREAM CG43050 DOWNSTREAM CR44198 INTERGENIC
2R	8310897	2R_8310897_SNP [dm3] 2R_12423392_SNP [dm6]	A	G	3.368e^-4	0.991	UPSTREAM CG8834 & 1 other INTRON CG8520	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	17663720	2R_17663720_SNP [dm3] 2R_21776215_SNP [dm6]	G	A	3.376e^-4	0.991	INTERGENIC
3L	7220779	3L_7220779_SNP [dm3] 3L_7227679_SNP [dm6]	T	G	3.379e^-4	0.991	INTERGENIC
3R	18129307	3R_18129307_SNP [dm3] 3R_22303585_SNP [dm6]	A	C	3.379e^-4	0.991	NON_SYNONYMOUS_CODING CG7084
3L	19103086	3L_19103086_SNP [dm3] 3L_19109986_SNP [dm6]	T	G	3.380e^-4	0.991	INTRON CG14082
2R	15000410	2R_15000410_SNP [dm3] 2R_19112905_SNP [dm6]	C	T	3.387e^-4	0.991	INTRON 5-HT1A
3L	8365377	3L_8365377_SNP [dm3] 3L_8372277_SNP [dm6]	T	C	3.393e^-4	0.991	UPSTREAM ImpE1 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19006829	X_19006829_SNP [dm3] X_19112796_SNP [dm6]	A	C	3.393e^-4	0.991	INTERGENIC
3R	12742021	3R_12742021_SNP [dm3] 3R_16916299_SNP [dm6]	A	T	3.409e^-4	0.991	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19716523	2L_19716523_SNP [dm3] 2L_19716523_SNP [dm6]	C	T	3.410e^-4	0.991	INTRON Lar
3R	18531097	3R_18531097_SNP [dm3] 3R_22705375_SNP [dm6]	A	G	3.412e^-4	0.991	SYNONYMOUS_CODING CG13842
3R	9880253	3R_9880253_SNP [dm3] 3R_14054531_SNP [dm6]	C	T	3.417e^-4	0.991	INTERGENIC
3R	16341568	3R_16341568_SNP [dm3] 3R_20515846_SNP [dm6]	T	C	3.421e^-4	0.991	INTERGENIC
3R	24672410	3R_24672410_SNP [dm3] 3R_28846688_SNP [dm6]	C	T	3.423e^-4	0.991	INTRON spg	TF binding site BDTNP1_TFBS_dl
2R	19827402	2R_19827402_SNP [dm3] 2R_23939879_SNP [dm6]	T	C	3.452e^-4	0.991	UPSTREAM Tal & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	8502716	2R_8502716_SNP [dm3] 2R_12615211_SNP [dm6]	A	T	3.455e^-4	0.991	UPSTREAM Galphaq INTRON Galphaq & 1 other	TF binding site mE1_TFBS_sens
2R	8315718	2R_8315718_SNP [dm3] 2R_12428213_SNP [dm6]	A	G	3.456e^-4	0.991	UPSTREAM CG13154 DOWNSTREAM Nup54 INTERGENIC
2R	5903907	2R_5903907_INS [dm3] 2R_10016402_INS [dm6]	C	CC	3.457e^-4	0.991	INTRON Pka-R2
3R	13195209	3R_13195209_SNP [dm3] 3R_17369487_SNP [dm6]	C	T	3.458e^-4	0.991	INTERGENIC
3L	13185286	3L_13185286_SNP [dm3] 3L_13192186_SNP [dm6]	G	T	3.466e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_cad
2R	13351846	2R_13351846_SNP [dm3] 2R_17464341_SNP [dm6]	T	A	3.466e^-4	0.991	UTR_3_PRIME CG14478	TF binding site mE1_TFBS_chinmo
2R	12849849	2R_12849849_DEL [dm3] 2R_16962344_DEL [dm6]	ATTGAGCTTATA...	A	3.471e^-4	0.991	INTERGENIC
2R	19160930	2R_19160930_SNP [dm3] 2R_23273407_SNP [dm6]	C	T	3.473e^-4	0.991	NON_SYNONYMOUS_CODING ord
2L	13117378	2L_13117378_SNP [dm3] 2L_13117378_SNP [dm6]	T	A	3.497e^-4	0.991	INTERGENIC
3R	22684412	3R_22684412_SNP [dm3] 3R_26858690_SNP [dm6]	A	G	3.501e^-4	0.991	INTRON Lerp	TF binding site mE1_TFBS_chinmo
3R	13195214	3R_13195214_SNP [dm3] 3R_17369492_SNP [dm6]	C	G	3.506e^-4	0.991	INTERGENIC
X	7454229	X_7454229_SNP [dm3] X_7560196_SNP [dm6]	T	G	3.515e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	9340067	2R_9340067_SNP [dm3] 2R_13452562_SNP [dm6]	C	T	3.529e^-4	0.991	SYNONYMOUS_CODING cbs
2R	4500013	2R_4500013_SNP [dm3] 2R_8612508_SNP [dm6]	G	A	3.531e^-4	0.991	DOWNSTREAM rgr INTRON CG8642
3R	11724808	3R_11724808_SNP [dm3] 3R_15899086_SNP [dm6]	T	C	3.534e^-4	0.991	INTRON glob1
2L	2390880	2L_2390880_SNP [dm3] 2L_2390880_SNP [dm6]	C	G	3.537e^-4	0.991	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
X	6448524	X_6448524_SNP [dm3] X_6554491_SNP [dm6]	T	C	3.540e^-4	0.991	SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_chinmo
2L	2593347	2L_2593347_SNP [dm3] 2L_2593347_SNP [dm6]	T	G	3.548e^-4	0.991	DOWNSTREAM CG15394 INTERGENIC
3L	2660018	3L_2660018_SNP [dm3] 3L_2660018_SNP [dm6]	A	C	3.553e^-4	0.991	SYNONYMOUS_CODING CG33233 INTRON Fife
3R	14924710	3R_14924710_SNP [dm3] 3R_19098988_SNP [dm6]	A	T	3.554e^-4	0.991	INTRON CG6040	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	11677774	2R_11677774_SNP [dm3] 2R_15790269_SNP [dm6]	T	A	3.566e^-4	0.991	INTRON Zasp52	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	9297416	2L_9297416_SNP [dm3] 2L_9297416_SNP [dm6]	G	A	3.567e^-4	0.991	UTR_3_PRIME Ggamma30A
2L	11634874	2L_11634874_SNP [dm3] 2L_11634874_SNP [dm6]	G	T	3.572e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_inv
X	17309396	X_17309396_SNP [dm3] X_17415363_SNP [dm6]	A	T	3.576e^-4	0.991	INTRON CG8611
X	7455799	X_7455799_SNP [dm3] X_7561766_SNP [dm6]	C	A	3.581e^-4	0.991	INTERGENIC
2L	7122197	2L_7122197_SNP [dm3] 2L_7122197_SNP [dm6]	G	T	3.589e^-4	0.991	INTRON Pvf3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2R	8267492	2R_8267492_SNP [dm3] 2R_12379987_SNP [dm6]	G	A	3.590e^-4	0.991	SYNONYMOUS_CODING CG13155 DOWNSTREAM Cpr49Ab	TF binding site mE1_TFBS_chinmo
X	7531341	X_7531341_SNP [dm3] X_7637308_SNP [dm6]	T	C	3.592e^-4	0.991	INTRON ct
3L	3058145	3L_3058145_SNP [dm3] 3L_3058145_SNP [dm6]	G	A	3.595e^-4	0.991	INTRON CG32486	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16743792	3R_16743792_SNP [dm3] 3R_20918070_SNP [dm6]	G	T	3.599e^-4	0.991	INTRON CG31191 & 1 other	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	12006130	X_12006130_SNP [dm3] X_12112097_SNP [dm6]	T	G	3.601e^-4	0.991	NON_SYNONYMOUS_CODING CG2750 INTRON CR43960 & 1 other	TF binding site mE1_TFBS_sens
3L	9548746	3L_9548746_SNP [dm3] 3L_9555646_SNP [dm6]	C	A	3.613e^-4	0.991	INTRON CG42673
X	12006260	X_12006260_SNP [dm3] X_12112227_SNP [dm6]	A	G	3.628e^-4	0.991	NON_SYNONYMOUS_CODING CG2750 INTRON CR43960 & 1 other	TF binding site mE1_TFBS_sens
2L	21942647	2L_21942647_SNP [dm3] 2L_21942647_SNP [dm6]	G	T	3.632e^-4	0.991	INTERGENIC
3L	7643621	3L_7643621_SNP [dm3] 3L_7650521_SNP [dm6]	C	A	3.651e^-4	0.991	UPSTREAM CG32373 & 1 other INTERGENIC
2R	9421602	2R_9421602_SNP [dm3] 2R_13534097_SNP [dm6]	A	G	3.654e^-4	0.991	INTRON Vmat	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	15383714	2R_15383714_SNP [dm3] 2R_19496209_SNP [dm6]	G	A	3.660e^-4	0.991	SYNONYMOUS_CODING hpo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	12169709	X_12169709_INS [dm3] X_12275676_INS [dm6]	C	CCTTTT	3.673e^-4	0.991	DOWNSTREAM CG45603 INTRON Ten-a
X	12675868	X_12675868_SNP [dm3] X_12781835_SNP [dm6]	G	A	3.676e^-4	0.991	INTRON CG32647
X	10732667	X_10732667_SNP [dm3] X_10838634_SNP [dm6]	A	G	3.679e^-4	0.991	UPSTREAM CG15210 INTRON sbr
X	17964016	X_17964016_SNP [dm3] X_18069983_SNP [dm6]	T	C	3.680e^-4	0.991	SYNONYMOUS_CODING Dhc16F	TF binding site mE1_TFBS_chinmo
3L	13509984	3L_13509984_SNP [dm3] 3L_13516884_SNP [dm6]	G	A	3.680e^-4	0.991	NON_SYNONYMOUS_CODING CG10710 DOWNSTREAM Liprin-beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13195204	3R_13195204_SNP [dm3] 3R_17369482_SNP [dm6]	G	A	3.680e^-4	0.991	INTERGENIC
2L	10560960	2L_10560960_SNP [dm3] 2L_10560960_SNP [dm6]	T	G	3.681e^-4	0.991	INTRON Trim9
3L	4147939	3L_4147939_SNP [dm3] 3L_4147939_SNP [dm6]	T	A	3.684e^-4	0.991	UPSTREAM CG1299 INTERGENIC
2R	19379537	2R_19379537_SNP [dm3] 2R_23492014_SNP [dm6]	T	C	3.691e^-4	0.991	DOWNSTREAM CG43795 INTERGENIC
3R	6986512	3R_6986512_SNP [dm3] 3R_11160790_SNP [dm6]	T	G	3.713e^-4	0.991	UPSTREAM CG4757 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	2421678	3R_2421678_SNP [dm3] 3R_6595956_SNP [dm6]	G	A	3.715e^-4	0.991	DOWNSTREAM CG1138 INTERGENIC	TF binding site mE1_TFBS_inv
3L	14388854	3L_14388854_SNP [dm3] 3L_14395754_SNP [dm6]	G	T	3.718e^-4	0.991	INTERGENIC
2R	8252320	2R_8252320_SNP [dm3] 2R_12364815_SNP [dm6]	G	A	3.729e^-4	0.991	EXON CR33013
3L	5125592	3L_5125592_SNP [dm3] 3L_5132492_SNP [dm6]	A	G	3.737e^-4	0.991	DOWNSTREAM CG15213 & 1 other INTERGENIC
X	18973802	X_18973802_SNP [dm3] X_19079769_SNP [dm6]	C	T	3.737e^-4	0.991	INTERGENIC
X	19006741	X_19006741_SNP [dm3] X_19112708_SNP [dm6]	A	G	3.748e^-4	0.991	INTERGENIC
3L	19031654	3L_19031654_SNP [dm3] 3L_19038554_SNP [dm6]	A	C	3.763e^-4	0.991	INTRON nkd	TF binding site mE1_TFBS_cad
3L	10410717	3L_10410717_INS [dm3] 3L_10417617_INS [dm6]	T	TGT	3.765e^-4	0.991	INTERGENIC
2L	12600870	2L_12600870_SNP [dm3] 2L_12600870_SNP [dm6]	C	G	3.769e^-4	0.991	INTRON nub
2L	6127330	2L_6127330_SNP [dm3] 2L_6127330_SNP [dm6]	C	A	3.769e^-4	0.991	NON_SYNONYMOUS_CODING WDR79 DOWNSTREAM CG42730 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	17696134	3L_17696134_SNP [dm3] 3L_17703034_SNP [dm6]	T	A	3.777e^-4	0.991	INTRON Ccn
X	9861014	X_9861014_SNP [dm3] X_9966981_SNP [dm6]	T	G	3.782e^-4	0.991	DOWNSTREAM CG43386 & 1 other INTRON CG43386
X	12821915	X_12821915_SNP [dm3] X_12927882_SNP [dm6]	C	G	3.783e^-4	0.991	INTRON fne
2R	1574894	2R_1574894_SNP [dm3] 2R_5687389_SNP [dm6]	G	A	3.784e^-4	0.991	INTRON scaf
2R	8370727	2R_8370727_DEL [dm3] 2R_12483222_DEL [dm6]	AA	A	3.790e^-4	0.991	INTRON Dh44-R2
3L	18352449	3L_18352449_SNP [dm3] 3L_18359349_SNP [dm6]	C	A	3.795e^-4	0.991	INTERGENIC
2L	3687982	2L_3687982_SNP [dm3] 2L_3687982_SNP [dm6]	A	G	3.807e^-4	0.991	INTRON CG34340	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
X	13808786	X_13808786_SNP [dm3] X_13914753_SNP [dm6]	C	T	3.810e^-4	0.991	UTR_5_PRIME mamo INTRON mamo
2R	12849189	2R_12849189_SNP [dm3] 2R_16961684_SNP [dm6]	A	G	3.811e^-4	0.991	INTERGENIC
3L	13844973	3L_13844973_SNP [dm3] 3L_13851873_SNP [dm6]	T	C	3.815e^-4	0.991	SYNONYMOUS_CODING Hml	TF binding site mE1_TFBS_cad
2R	12632824	2R_12632824_SNP [dm3] 2R_16745319_SNP [dm6]	G	A	3.822e^-4	0.991	UTR_3_PRIME CG15617 UPSTREAM Sfp53D
X	21889962	X_21889962_INS [dm3] X_22488126_INS [dm6]	C	CA	3.824e^-4	0.991	DOWNSTREAM Cp110 INTRON l_1_G0196 EXON CR43493	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	9535064	3L_9535064_SNP [dm3] 3L_9541964_SNP [dm6]	C	T	3.824e^-4	0.991	DOWNSTREAM Ir67a INTERGENIC
3L	13509860	3L_13509860_SNP [dm3] 3L_13516760_SNP [dm6]	T	C	3.824e^-4	0.991	SYNONYMOUS_CODING CG10710 DOWNSTREAM Liprin-beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	21886801	X_21886801_SNP [dm3] X_22484965_SNP [dm6]	A	T	3.831e^-4	0.991	INTRON Cp110	transposable element FlyBase
2L	11227827	2L_11227827_SNP [dm3] 2L_11227827_SNP [dm6]	A	G	3.839e^-4	0.991	INTRON ab
2L	2332302	2L_2332302_SNP [dm3] 2L_2332302_SNP [dm6]	A	G	3.839e^-4	0.991	INTRON CG9967 & 1 other
X	10833510	X_10833510_SNP [dm3] X_10939477_SNP [dm6]	T	A	3.839e^-4	0.991	INTRON Myo10A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2689321	2L_2689321_SNP [dm3] 2L_2689321_SNP [dm6]	G	C	3.849e^-4	0.991	INTRON CG31690
X	11264686	X_11264686_SNP [dm3] X_11370653_SNP [dm6]	C	T	3.851e^-4	0.991	INTRON dlg1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
X	19007094	X_19007094_SNP [dm3] X_19113061_SNP [dm6]	C	G	3.852e^-4	0.991	INTERGENIC
3L	8837322	3L_8837322_SNP [dm3] 3L_8844222_SNP [dm6]	C	T	3.853e^-4	0.991	INTRON dally
2L	19732053	2L_19732053_SNP [dm3] 2L_19732053_SNP [dm6]	C	T	3.857e^-4	0.991	UTR_3_PRIME Lar DOWNSTREAM CG10462 & 1 other
X	19006918	X_19006918_SNP [dm3] X_19112885_SNP [dm6]	A	G	3.869e^-4	0.991	INTERGENIC
2R	9083971	2R_9083971_SNP [dm3] 2R_13196466_SNP [dm6]	C	A	3.869e^-4	0.991	INTRON Kdm4B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Kr mE1_TFBS_sens
2R	19882363	2R_19882363_SNP [dm3] 2R_23994840_SNP [dm6]	T	C	3.886e^-4	0.991	UTR_5_PRIME CG3860 DOWNSTREAM Unc-89
X	5884337	X_5884337_SNP [dm3] X_5990304_SNP [dm6]	C	T	3.889e^-4	0.991	UTR_5_PRIME CG5966 INTRON CG5966
3R	4615980	3R_4615980_SNP [dm3] 3R_8790258_SNP [dm6]	A	C	3.902e^-4	0.991	INTRON Pif1B & 1 other
3R	9133450	3R_9133450_SNP [dm3] 3R_13307728_SNP [dm6]	G	T	3.907e^-4	0.991	INTRON CG32473
X	7930412	X_7930412_SNP [dm3] X_8036379_SNP [dm6]	G	C	3.915e^-4	0.991	NON_SYNONYMOUS_CODING CG2233	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
X	8193223	X_8193223_INS [dm3] X_8299190_INS [dm6]	A	AGC	3.919e^-4	0.991	INTRON nAChRalpha3
X	12731939	X_12731939_SNP [dm3] X_12837906_SNP [dm6]	G	A	3.919e^-4	0.991	INTRON Pde9	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2390746	2L_2390746_SNP [dm3] 2L_2390746_SNP [dm6]	A	C	3.920e^-4	0.991	UPSTREAM VGlut & 1 other INTERGENIC
3R	24237872	3R_24237872_SNP [dm3] 3R_28412150_SNP [dm6]	C	A	3.922e^-4	0.991	INTERGENIC
2L	10296659	2L_10296659_SNP [dm3] 2L_10296659_SNP [dm6]	C	A	3.923e^-4	0.991	SYNONYMOUS_CODING CYLD	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	1566630	2R_1566630_SNP [dm3] 2R_5679125_SNP [dm6]	C	T	3.931e^-4	0.991	INTRON scaf	TF binding site mE1_TFBS_cad
3R	23487598	3R_23487598_SNP [dm3] 3R_27661876_SNP [dm6]	G	A	3.944e^-4	0.991	UPSTREAM unc80 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9133463	3R_9133463_SNP [dm3] 3R_13307741_SNP [dm6]	A	G	3.951e^-4	0.991	INTRON CG32473
2L	5454424	2L_5454424_SNP [dm3] 2L_5454424_SNP [dm6]	A	G	3.952e^-4	0.991	INTERGENIC
3R	14253664	3R_14253664_SNP [dm3] 3R_18427942_SNP [dm6]	T	A	3.955e^-4	0.991	UTR_3_PRIME fru INTRON fru
2L	10943532	2L_10943532_SNP [dm3] 2L_10943532_SNP [dm6]	A	G	3.955e^-4	0.991	UPSTREAM CR44492 INTRON dpr2 EXON CR44493
3R	5116779	3R_5116779_SNP [dm3] 3R_9291057_SNP [dm6]	A	G	3.969e^-4	0.991	INTERGENIC
X	8068474	X_8068474_DEL [dm3] X_8174441_DEL [dm6]	AGAGTA	A	3.973e^-4	0.991	INTRON slpr
2L	17004152	2L_17004152_SNP [dm3] 2L_17004152_SNP [dm6]	G	A	3.974e^-4	0.991	INTERGENIC
2L	14676023	2L_14676023_SNP [dm3] 2L_14676023_SNP [dm6]	A	G	3.977e^-4	0.991	INTRON osp
X	5884366	X_5884366_SNP [dm3] X_5990333_SNP [dm6]	T	C	3.991e^-4	0.991	UTR_5_PRIME CG5966 INTRON CG5966
3L	9244469	3L_9244469_SNP [dm3] 3L_9251369_SNP [dm6]	A	G	4.002e^-4	0.991	UPSTREAM GluRIB DOWNSTREAM CG4477 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17846136	2R_17846136_SNP [dm3] 2R_21958631_SNP [dm6]	A	T	4.003e^-4	0.991	INTERGENIC
X	4681162	X_4681162_SNP [dm3] X_4787129_SNP [dm6]	T	C	4.006e^-4	0.991	INTERGENIC
2L	5861912	2L_5861912_SNP [dm3] 2L_5861912_SNP [dm6]	C	A	4.007e^-4	0.991	INTRON rau
2R	2486876	2R_2486876_SNP [dm3] 2R_6599371_SNP [dm6]	G	A	4.016e^-4	0.991	DOWNSTREAM CG15233 INTRON jing	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	15819215	3R_15819215_SNP [dm3] 3R_19993493_SNP [dm6]	G	A	4.017e^-4	0.991	INTRON Hs6st	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18463910	3R_18463910_SNP [dm3] 3R_22638188_SNP [dm6]	C	T	4.019e^-4	0.991	NON_SYNONYMOUS_CODING loco	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	21803732	2L_21803732_SNP [dm3] 2L_21803732_SNP [dm6]	A	G	4.020e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	23055674	3R_23055674_SNP [dm3] 3R_27229952_SNP [dm6]	T	C	4.022e^-4	0.991	SYNONYMOUS_CODING CG31064 UPSTREAM CG42814 DOWNSTREAM CG31064	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6265749	3L_6265749_SNP [dm3] 3L_6272649_SNP [dm6]	T	A	4.022e^-4	0.991	INTERGENIC
3R	13195219	3R_13195219_SNP [dm3] 3R_17369497_SNP [dm6]	G	A	4.024e^-4	0.991	INTERGENIC
2R	19160982	2R_19160982_SNP [dm3] 2R_23273459_SNP [dm6]	A	G	4.031e^-4	0.991	SYNONYMOUS_CODING ord
3R	19144494	3R_19144494_SNP [dm3] 3R_23318772_SNP [dm6]	C	T	4.036e^-4	0.991	INTRON pnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17104998	3R_17104998_SNP [dm3] 3R_21279276_SNP [dm6]	C	T	4.041e^-4	0.991	SYNONYMOUS_CODING SIFaR	TF binding site mE1_TFBS_cad
2R	12849181	2R_12849181_SNP [dm3] 2R_16961676_SNP [dm6]	T	A	4.043e^-4	0.991	INTERGENIC
2L	12648070	2L_12648070_SNP [dm3] 2L_12648070_SNP [dm6]	G	A	4.052e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	5814166	2L_5814166_SNP [dm3] 2L_5814166_SNP [dm6]	C	A	4.059e^-4	0.991	INTERGENIC
2L	3519065	2L_3519065_SNP [dm3] 2L_3519065_SNP [dm6]	G	A	4.071e^-4	0.991	SYNONYMOUS_CODING CG3213 UPSTREAM CG8851	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15254523	3L_15254523_SNP [dm3] 3L_15261423_SNP [dm6]	T	C	4.072e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3R	16720898	3R_16720898_SNP [dm3] 3R_20895176_SNP [dm6]	A	G	4.081e^-4	0.991	UTR_3_PRIME CG10830
2R	20158091	2R_20158091_SNP [dm3] 2R_24270568_SNP [dm6]	T	C	4.100e^-4	0.991	INTERGENIC
X	18323023	X_18323023_SNP [dm3] X_18428990_SNP [dm6]	C	A	4.100e^-4	0.991	INTERGENIC
3L	4194549	3L_4194549_SNP [dm3] 3L_4194549_SNP [dm6]	C	T	4.103e^-4	0.991	UPSTREAM CG43367 DOWNSTREAM tipE INTRON CG43367	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3L	10481412	3L_10481412_SNP [dm3] 3L_10488312_SNP [dm6]	A	C	4.106e^-4	0.991	INTRON A2bp1
2L	6155306	2L_6155306_SNP [dm3] 2L_6155306_SNP [dm6]	C	A	4.106e^-4	0.991	UPSTREAM CG31639 INTERGENIC
3L	7843384	3L_7843384_SNP [dm3] 3L_7850284_SNP [dm6]	A	T	4.118e^-4	0.991	INTRON Pdp1	regulatory region REDfly_CRMs
2L	17682203	2L_17682203_SNP [dm3] 2L_17682203_SNP [dm6]	T	C	4.118e^-4	0.991	INTRON CadN
2L	8286202	2L_8286202_SNP [dm3] 2L_8286202_SNP [dm6]	A	T	4.122e^-4	0.991	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	21565594	3R_21565594_SNP [dm3] 3R_25739872_SNP [dm6]	T	C	4.122e^-4	0.991	INTRON LpR2
3L	2626794	3L_2626794_SNP [dm3] 3L_2626794_SNP [dm6]	T	C	4.126e^-4	0.991	INTRON Pxn	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	15901142	2R_15901142_SNP [dm3] 2R_20013637_SNP [dm6]	A	G	4.128e^-4	0.991	UPSTREAM CR44629 INTERGENIC
2L	13441932	2L_13441932_SNP [dm3] 2L_13441932_SNP [dm6]	A	G	4.137e^-4	0.991	INTRON CG42784 EXON CR45683
3R	17066436	3R_17066436_SNP [dm3] 3R_21240714_SNP [dm6]	G	T	4.142e^-4	0.991	INTERGENIC	regulatory region REDfly_CRMs
3R	3335040	3R_3335040_SNP [dm3] 3R_7509318_SNP [dm6]	T	G	4.145e^-4	0.991	DOWNSTREAM alpha-Est8 INTERGENIC
3L	2896552	3L_2896552_SNP [dm3] 3L_2896552_SNP [dm6]	A	G	4.146e^-4	0.991	UPSTREAM Shab INTRON Shab	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	19432578	2R_19432578_SNP [dm3] 2R_23545055_SNP [dm6]	G	T	4.146e^-4	0.991	UTR_3_PRIME wmd DOWNSTREAM CG30185	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13000375	3R_13000375_SNP [dm3] 3R_17174653_SNP [dm6]	A	T	4.146e^-4	0.991	INTRON Mur89F
3R	15339679	3R_15339679_SNP [dm3] 3R_19513957_SNP [dm6]	A	T	4.151e^-4	0.991	INTRON Dys
2R	8315686	2R_8315686_SNP [dm3] 2R_12428181_SNP [dm6]	T	C	4.167e^-4	0.991	UPSTREAM CG13154 DOWNSTREAM Nup54 INTERGENIC
X	8036532	X_8036532_SNP [dm3] X_8142499_SNP [dm6]	A	G	4.167e^-4	0.991	UPSTREAM Smox DOWNSTREAM CG17982 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	23487572	3R_23487572_SNP [dm3] 3R_27661850_SNP [dm6]	A	T	4.189e^-4	0.991	UPSTREAM unc80 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19552037	3R_19552037_SNP [dm3] 3R_23726315_SNP [dm6]	G	A	4.203e^-4	0.991	INTRON CG10365
2R	19726858	2R_19726858_SNP [dm3] 2R_23839335_SNP [dm6]	A	C	4.204e^-4	0.991	UTR_3_PRIME CG5549 DOWNSTREAM snoRNA:Psi18S-176
2R	9680382	2R_9680382_SNP [dm3] 2R_13792877_SNP [dm6]	G	A	4.214e^-4	0.991	DOWNSTREAM CR43811 INTERGENIC
3L	8365383	3L_8365383_SNP [dm3] 3L_8372283_SNP [dm6]	C	T	4.216e^-4	0.991	UPSTREAM ImpE1 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9067966	3R_9067966_SNP [dm3] 3R_13242244_SNP [dm6]	C	T	4.223e^-4	0.991	INTRON Ace
3R	8084450	3R_8084450_SNP [dm3] 3R_12258728_SNP [dm6]	G	A	4.228e^-4	0.991	UPSTREAM svp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	15254536	3L_15254536_SNP [dm3] 3L_15261436_SNP [dm6]	T	A	4.231e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3R	9060793	3R_9060793_SNP [dm3] 3R_13235071_SNP [dm6]	G	C	4.234e^-4	0.991	INTRON Ace
2R	18570666	2R_18570666_SNP [dm3] 2R_22683161_SNP [dm6]	C	A	4.235e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_sens
2R	16757048	2R_16757048_SNP [dm3] 2R_20869543_SNP [dm6]	T	A	4.237e^-4	0.991	UPSTREAM IM4 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	19835582	2R_19835582_SNP [dm3] 2R_23948059_SNP [dm6]	A	G	4.239e^-4	0.991	SYNONYMOUS_CODING CG13565 INTRON CG13565
X	9121094	X_9121094_SNP [dm3] X_9227061_SNP [dm6]	T	C	4.244e^-4	0.991	UPSTREAM Gr8a DOWNSTREAM CG15370 INTERGENIC
2L	7124672	2L_7124672_SNP [dm3] 2L_7124672_SNP [dm6]	T	A	4.255e^-4	0.991	INTRON Pvf3	TF binding site BDTNP1_TFBS_twi
3L	18535045	3L_18535045_SNP [dm3] 3L_18541945_SNP [dm6]	C	T	4.256e^-4	0.991	INTERGENIC
2L	18202707	2L_18202707_SNP [dm3] 2L_18202707_SNP [dm6]	C	T	4.263e^-4	0.991	INTRON CG42750	TF binding site mE1_TFBS_cad
3R	20978157	3R_20978157_SNP [dm3] 3R_25152435_SNP [dm6]	T	G	4.264e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	499699	3R_499699_SNP [dm3] 3R_4673977_SNP [dm6]	A	T	4.269e^-4	0.991	INTRON CG43427 EXON CR44157
2R	13726534	2R_13726534_DEL [dm3] 2R_17839029_DEL [dm6]	TT	T	4.273e^-4	0.991	INTRON grh	TF binding site BDTNP1_TFBS_da
2L	2931770	2L_2931770_SNP [dm3] 2L_2931770_SNP [dm6]	G	T	4.273e^-4	0.991	INTRON lilli
3L	17316562	3L_17316562_SNP [dm3] 3L_17323462_SNP [dm6]	C	G	4.274e^-4	0.991	NON_SYNONYMOUS_CODING CG13724
2L	21971520	2L_21971520_SNP [dm3] 2L_21971520_SNP [dm6]	C	T	4.290e^-4	0.991	INTERGENIC
3L	3983490	3L_3983490_SNP [dm3] 3L_3983490_SNP [dm6]	G	C	4.291e^-4	0.991	UPSTREAM scrt INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	5591098	2L_5591098_SNP [dm3] 2L_5591098_SNP [dm6]	T	C	4.293e^-4	0.991	INTERGENIC
2R	19194763	2R_19194763_SNP [dm3] 2R_23307240_SNP [dm6]	G	T	4.294e^-4	0.991	INTERGENIC
2L	8609017	2L_8609017_SNP [dm3] 2L_8609017_SNP [dm6]	C	T	4.296e^-4	0.991	INTRON Sema-1a
3R	4952739	3R_4952739_SNP [dm3] 3R_9127017_SNP [dm6]	G	C	4.299e^-4	0.991	INTRON pum
2L	10870113	2L_10870113_SNP [dm3] 2L_10870113_SNP [dm6]	A	T	4.299e^-4	0.991	UPSTREAM CG12517 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	11371068	2L_11371068_SNP [dm3] 2L_11371068_SNP [dm6]	G	T	4.300e^-4	0.991	INTRON salr
X	7453920	X_7453920_SNP [dm3] X_7559887_SNP [dm6]	T	C	4.308e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	3327435	2L_3327435_SNP [dm3] 2L_3327435_SNP [dm6]	G	A	4.316e^-4	0.991	UPSTREAM CG33282 DOWNSTREAM CG33281 INTERGENIC
2R	8792503	2R_8792503_SNP [dm3] 2R_12904998_SNP [dm6]	A	T	4.316e^-4	0.991	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	8494394	X_8494394_SNP [dm3] X_8600361_SNP [dm6]	T	C	4.321e^-4	0.991	SYNONYMOUS_CODING Crag	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	10267727	3R_10267727_SNP [dm3] 3R_14442005_SNP [dm6]	G	A	4.328e^-4	0.991	INTRON cv-c
3L	16040948	3L_16040948_DEL [dm3] 3L_16047848_DEL [dm6]	CCT	C	4.332e^-4	0.991	INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	12848119	2R_12848119_SNP [dm3] 2R_16960614_SNP [dm6]	C	G	4.340e^-4	0.991	UPSTREAM CG9010 INTERGENIC
2R	17223207	2R_17223207_SNP [dm3] 2R_21335702_SNP [dm6]	A	T	4.348e^-4	0.991	SYNONYMOUS_CODING dom DOWNSTREAM snoRNA:Me28S-G2596 & 1 other INTRON dom	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13844109	3L_13844109_SNP [dm3] 3L_13851009_SNP [dm6]	T	C	4.348e^-4	0.991	SYNONYMOUS_CODING Hml	TF binding site mE1_TFBS_cad
3L	12781356	3L_12781356_SNP [dm3] 3L_12788256_SNP [dm6]	C	A	4.348e^-4	0.991	SYNONYMOUS_CODING Atg1
2R	10730633	2R_10730633_SNP [dm3] 2R_14843128_SNP [dm6]	G	A	4.354e^-4	0.991	UTR_3_PRIME NaPi-T
2R	4336993	2R_4336993_SNP [dm3] 2R_8449488_SNP [dm6]	A	C	4.361e^-4	0.991	NON_SYNONYMOUS_CODING Cyp4e1 DOWNSTREAM Mal-A1
2L	10560649	2L_10560649_SNP [dm3] 2L_10560649_SNP [dm6]	T	C	4.362e^-4	0.991	INTRON Trim9
3R	17055454	3R_17055454_SNP [dm3] 3R_21229732_SNP [dm6]	T	C	4.370e^-4	0.991	DOWNSTREAM e & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	10433787	3L_10433787_SNP [dm3] 3L_10440687_SNP [dm6]	C	G	4.380e^-4	0.991	INTERGENIC
3R	17518267	3R_17518267_SNP [dm3] 3R_21692545_SNP [dm6]	A	C	4.396e^-4	0.991	INTRON CG31176
3R	9599208	3R_9599208_SNP [dm3] 3R_13773486_SNP [dm6]	A	T	4.396e^-4	0.991	INTRON CG9297
3L	14388981	3L_14388981_SNP [dm3] 3L_14395881_SNP [dm6]	A	T	4.404e^-4	0.991	INTERGENIC
3R	12959369	3R_12959369_SNP [dm3] 3R_17133647_SNP [dm6]	C	T	4.404e^-4	0.991	UTR_3_PRIME CG31266 UPSTREAM CG31267	TF binding site mE1_TFBS_cad
2R	3387155	2R_3387155_INS [dm3] 2R_7499650_INS [dm6]	A	AA	4.408e^-4	0.991	UPSTREAM didum INTRON dpa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	21892197	X_21892197_SNP [dm3] X_22490361_SNP [dm6]	A	G	4.410e^-4	0.991	INTRON l_1_G0196 & 1 other
2L	4381817	2L_4381817_SNP [dm3] 2L_4381817_SNP [dm6]	T	A	4.413e^-4	0.991	NON_SYNONYMOUS_CODING CG17612	TF binding site mE1_TFBS_sens
2L	13117435	2L_13117435_SNP [dm3] 2L_13117435_SNP [dm6]	T	A	4.430e^-4	0.991	INTERGENIC
X	4681148	X_4681148_SNP [dm3] X_4787115_SNP [dm6]	C	T	4.443e^-4	0.991	INTERGENIC
X	4681163	X_4681163_DEL [dm3] X_4787130_DEL [dm6]	ATCAAT	A	4.443e^-4	0.991	INTERGENIC
2R	12849177	2R_12849177_SNP [dm3] 2R_16961672_SNP [dm6]	T	C	4.461e^-4	0.991	INTERGENIC
2L	18157782	2L_18157782_SNP [dm3] 2L_18157782_SNP [dm6]	C	T	4.466e^-4	0.991	SYNONYMOUS_CODING CG7200 DOWNSTREAM CG5783	TF binding site mE1_TFBS_sens
2R	13648088	2R_13648088_SNP [dm3] 2R_17760583_SNP [dm6]	G	C	4.483e^-4	0.991	UPSTREAM CG5009 DOWNSTREAM HLH54F INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	14142181	3L_14142181_SNP [dm3] 3L_14149081_SNP [dm6]	G	A	4.506e^-4	0.991	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	13195556	3R_13195556_SNP [dm3] 3R_17369834_SNP [dm6]	A	T	4.516e^-4	0.991	INTERGENIC
2L	18612953	2L_18612953_SNP [dm3] 2L_18612953_SNP [dm6]	A	C	4.527e^-4	0.991	UPSTREAM Atac2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12632997	2R_12632997_SNP [dm3] 2R_16745492_SNP [dm6]	A	G	4.530e^-4	0.991	UTR_3_PRIME CG15617 UPSTREAM Sfp53D	TF binding site mE1_TFBS_cad
2L	4077567	2L_4077567_SNP [dm3] 2L_4077567_SNP [dm6]	A	C	4.538e^-4	0.991	INTRON ed
3R	25810700	3R_25810700_SNP [dm3] 3R_29984978_SNP [dm6]	G	T	4.538e^-4	0.991	INTRON CG7896
X	3291285	X_3291285_SNP [dm3] X_3397252_SNP [dm6]	A	T	4.545e^-4	0.991	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23487575	3R_23487575_SNP [dm3] 3R_27661853_SNP [dm6]	T	G	4.553e^-4	0.991	UPSTREAM unc80 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16874857	2R_16874857_SNP [dm3] 2R_20987352_SNP [dm6]	G	A	4.558e^-4	0.991	SYNONYMOUS_CODING CG3216 UPSTREAM CG15651	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7889316	2L_7889316_SNP [dm3] 2L_7889316_SNP [dm6]	G	C	4.560e^-4	0.991	UTR_3_PRIME Spn28Db UPSTREAM Spn28Da
X	21890280	X_21890280_SNP [dm3] X_22488444_SNP [dm6]	A	C	4.561e^-4	0.991	DOWNSTREAM Cp110 INTRON l_1_G0196 EXON CR43493	TF binding site mE1_TFBS_Trl
X	21882694	X_21882694_SNP [dm3] X_22480858_SNP [dm6]	T	C	4.565e^-4	0.991	UTR_5_PRIME CG12576	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	17020875	3R_17020875_SNP [dm3] 3R_21195153_SNP [dm6]	A	T	4.570e^-4	0.991	INTRON SNF4Agamma
X	8041396	X_8041396_SNP [dm3] X_8147363_SNP [dm6]	G	T	4.572e^-4	0.991	UTR_3_PRIME CG2129 UPSTREAM CG15336	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	8268081	2R_8268081_SNP [dm3] 2R_12380576_SNP [dm6]	T	A	4.574e^-4	0.991	UPSTREAM CG13155 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	20165108	2R_20165108_SNP [dm3] 2R_24277585_SNP [dm6]	T	G	4.581e^-4	0.991	INTRON nvy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8924794	2R_8924794_SNP [dm3] 2R_13037289_SNP [dm6]	C	T	4.598e^-4	0.991	INTERGENIC
3L	12810000	3L_12810000_SNP [dm3] 3L_12816900_SNP [dm6]	G	A	4.600e^-4	0.991	NON_SYNONYMOUS_CODING CG42588	TF binding site mE1_TFBS_HSA
X	21889737	X_21889737_SNP [dm3] X_22487901_SNP [dm6]	A	C	4.601e^-4	0.991	DOWNSTREAM Cp110 INTRON l_1_G0196 EXON CR43493	TF binding site mE1_TFBS_Trl
2L	19457512	2L_19457512_SNP [dm3] 2L_19457512_SNP [dm6]	C	T	4.611e^-4	0.991	SYNONYMOUS_CODING CG10026	TF binding site BDTNP1_TFBS_dl
X	2902093	X_2902093_SNP [dm3] X_3008060_SNP [dm6]	C	A	4.632e^-4	0.991	INTRON kirre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Stat92E
2L	10444147	2L_10444147_SNP [dm3] 2L_10444147_SNP [dm6]	A	G	4.636e^-4	0.991	INTRON loh	TF binding site BDTNP1_TFBS_twi
2L	4692336	2L_4692336_SNP [dm3] 2L_4692336_SNP [dm6]	A	G	4.641e^-4	0.991	INTERGENIC
3R	23487571	3R_23487571_SNP [dm3] 3R_27661849_SNP [dm6]	C	A	4.647e^-4	0.991	UPSTREAM unc80 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10730091	2R_10730091_SNP [dm3] 2R_14842586_SNP [dm6]	G	A	4.651e^-4	0.991	DOWNSTREAM NaPi-T INTERGENIC
2L	7088624	2L_7088624_SNP [dm3] 2L_7088624_SNP [dm6]	T	C	4.653e^-4	0.991	INTERGENIC
X	9570320	X_9570320_SNP [dm3] X_9676287_SNP [dm6]	T	C	4.659e^-4	0.991	INTRON nej
2L	2368592	2L_2368592_SNP [dm3] 2L_2368592_SNP [dm6]	A	G	4.666e^-4	0.991	NON_SYNONYMOUS_CODING Axud1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	13608180	X_13608180_SNP [dm3] X_13714147_SNP [dm6]	T	C	4.667e^-4	0.991	UTR_3_PRIME NnaD INTRON CG9940 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	3154203	3R_3154203_SNP [dm3] 3R_7328481_SNP [dm6]	T	G	4.681e^-4	0.991	INTERGENIC
2R	17110073	2R_17110073_SNP [dm3] 2R_21222568_SNP [dm6]	C	T	4.690e^-4	0.991	INTRON ASPP	TF binding site mE1_TFBS_cad
X	21886514	X_21886514_SNP [dm3] X_22484678_SNP [dm6]	A	T	4.694e^-4	0.991	INTRON Cp110
2L	3510080	2L_3510080_SNP [dm3] 2L_3510080_SNP [dm6]	T	C	4.702e^-4	0.991	START_GAINED CG31954 UTR_5_PRIME CG31954 DOWNSTREAM CG33123 & 1 other
3L	328508	3L_328508_SNP [dm3] 3L_328508_SNP [dm6]	C	T	4.704e^-4	0.991	UPSTREAM Atac3 INTRON Ptpmeg	TF binding site BDTNP1_TFBS_dl
2R	15115063	2R_15115063_SNP [dm3] 2R_19227558_SNP [dm6]	G	A	4.711e^-4	0.991	SYNONYMOUS_CODING CG7137 DOWNSTREAM hppy	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	23518083	3R_23518083_SNP [dm3] 3R_27692361_SNP [dm6]	G	A	4.714e^-4	0.991	UTR_3_PRIME CG12880
2R	9567124	2R_9567124_SNP [dm3] 2R_13679619_SNP [dm6]	G	T	4.716e^-4	0.991	INTRON fas
X	7585043	X_7585043_SNP [dm3] X_7691010_SNP [dm6]	G	A	4.717e^-4	0.991	INTRON CHES-1-like	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3R	9605182	3R_9605182_SNP [dm3] 3R_13779460_SNP [dm6]	T	A	4.731e^-4	0.991	UPSTREAM CG9288 & 1 other DOWNSTREAM CG9297 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	22970402	3L_22970402_SNP [dm3] 3L_22977302_SNP [dm6]	T	A	4.738e^-4	0.991	INTERGENIC	transposable element FlyBase
3L	16932877	3L_16932877_SNP [dm3] 3L_16939777_SNP [dm6]	A	T	4.741e^-4	0.991	NON_SYNONYMOUS_CODING Cpr73D UPSTREAM CG13022	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2413945	3L_2413945_SNP [dm3] 3L_2413945_SNP [dm6]	A	T	4.744e^-4	0.991	UTR_5_PRIME CG45186 INTRON CG45186
2R	6237950	2R_6237950_SNP [dm3] 2R_10350445_SNP [dm6]	C	A	4.759e^-4	0.991	INTRON CG42732
X	19999491	X_19999491_SNP [dm3] X_20105458_SNP [dm6]	A	G	4.764e^-4	0.991	INTERGENIC
2L	11208127	2L_11208127_SNP [dm3] 2L_11208127_SNP [dm6]	G	T	4.775e^-4	0.991	INTERGENIC
3L	18723259	3L_18723259_SNP [dm3] 3L_18730159_SNP [dm6]	T	A	4.783e^-4	0.991	INTERGENIC
2L	10554328	2L_10554328_SNP [dm3] 2L_10554328_SNP [dm6]	G	T	4.786e^-4	0.991	INTRON Trim9	TF binding site mE1_TFBS_cad
3L	15034406	3L_15034406_SNP [dm3] 3L_15041306_SNP [dm6]	G	A	4.790e^-4	0.991	DOWNSTREAM Rpn12R INTRON Sytbeta	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	12265055	2L_12265055_SNP [dm3] 2L_12265055_SNP [dm6]	C	T	4.795e^-4	0.991	INTRON aret
3R	3427531	3R_3427531_SNP [dm3] 3R_7601809_SNP [dm6]	T	G	4.803e^-4	0.991	INTRON CG34127
2L	4375895	2L_4375895_SNP [dm3] 2L_4375895_SNP [dm6]	A	C	4.805e^-4	0.991	INTRON Traf4	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	18320929	2R_18320929_DEL [dm3] 2R_22433424_DEL [dm6]	CT	C	4.820e^-4	0.991	INTERGENIC
2L	7087068	2L_7087068_SNP [dm3] 2L_7087068_SNP [dm6]	G	T	4.829e^-4	0.991	INTERGENIC
3L	10905807	3L_10905807_SNP [dm3] 3L_10912707_SNP [dm6]	A	T	4.834e^-4	0.991	INTERGENIC
3L	10905813	3L_10905813_DEL [dm3] 3L_10912713_DEL [dm6]	TT	C	4.834e^-4	0.991	INTERGENIC
2L	14044469	2L_14044469_SNP [dm3] 2L_14044469_SNP [dm6]	C	T	4.844e^-4	0.991	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8924841	2R_8924841_SNP [dm3] 2R_13037336_SNP [dm6]	G	C	4.853e^-4	0.991	INTERGENIC
3L	7482764	3L_7482764_SNP [dm3] 3L_7489664_SNP [dm6]	A	G	4.853e^-4	0.991	INTERGENIC
X	5157666	X_5157666_SNP [dm3] X_5263633_SNP [dm6]	T	C	4.867e^-4	0.991	INTERGENIC
2R	13625474	2R_13625474_SNP [dm3] 2R_17737969_SNP [dm6]	A	G	4.868e^-4	0.991	SYNONYMOUS_CODING CG6401 UPSTREAM CG6406
3R	9146977	3R_9146977_SNP [dm3] 3R_13321255_SNP [dm6]	G	C	4.879e^-4	0.991	INTERGENIC
2R	8463311	2R_8463311_SNP [dm3] 2R_12575806_SNP [dm6]	C	G	4.880e^-4	0.991	UTR_3_PRIME Sin3A DOWNSTREAM ClC-b
X	10834226	X_10834226_SNP [dm3] X_10940193_SNP [dm6]	A	T	4.881e^-4	0.991	INTRON Myo10A	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9223144	X_9223144_SNP [dm3] X_9329111_SNP [dm6]	C	A	4.887e^-4	0.991	NON_SYNONYMOUS_CODING CG34450 INTRON CG34449
3L	563231	3L_563231_SNP [dm3] 3L_563231_SNP [dm6]	T	A	4.904e^-4	0.991	INTRON hipk
3L	12781331	3L_12781331_SNP [dm3] 3L_12788231_SNP [dm6]	C	A	4.907e^-4	0.991	INTRON Atg1
2L	13912883	2L_13912883_SNP [dm3] 2L_13912883_SNP [dm6]	C	A	4.918e^-4	0.991	DOWNSTREAM Acyp INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	2996107	X_2996107_SNP [dm3] X_3102074_SNP [dm6]	A	G	4.922e^-4	0.991	INTRON kirre
2L	8286122	2L_8286122_SNP [dm3] 2L_8286122_SNP [dm6]	T	G	4.922e^-4	0.991	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	25182567	3R_25182567_SNP [dm3] 3R_29356845_SNP [dm6]	T	C	4.925e^-4	0.991	UPSTREAM CR45547 INTERGENIC
3R	4952758	3R_4952758_SNP [dm3] 3R_9127036_SNP [dm6]	T	G	4.928e^-4	0.991	INTRON pum
3L	3909449	3L_3909449_SNP [dm3] 3L_3909449_SNP [dm6]	G	A	4.928e^-4	0.991	UTR_5_PRIME mge DOWNSTREAM Eip63F-1 INTRON mge	TF binding site mE1_TFBS_HSA
3R	23261701	3R_23261701_SNP [dm3] 3R_27435979_SNP [dm6]	T	C	4.929e^-4	0.991	INTRON side
3R	16921947	3R_16921947_SNP [dm3] 3R_21096225_SNP [dm6]	C	G	4.937e^-4	0.991	DOWNSTREAM CR44178 INTRON RhoGAP93B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	17017102	X_17017102_SNP [dm3] X_17123069_SNP [dm6]	A	G	4.938e^-4	0.991	INTRON CG5004	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	10151074	3R_10151074_SNP [dm3] 3R_14325352_SNP [dm6]	A	T	4.942e^-4	0.991	NON_SYNONYMOUS_CODING Afti	TF binding site mE1_TFBS_sens
2L	1021228	2L_1021228_SNP [dm3] 2L_1021228_SNP [dm6]	G	T	4.946e^-4	0.991	INTRON IA-2
3R	3245595	3R_3245595_SNP [dm3] 3R_7419873_SNP [dm6]	A	G	4.947e^-4	0.991	NON_SYNONYMOUS_CODING CG31544 UPSTREAM CG34023 & 1 other
3L	6379888	3L_6379888_DEL [dm3] 3L_6386788_DEL [dm6]	ATTAGCAGCTC...	A	4.953e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_HSA
X	10438196	X_10438196_SNP [dm3] X_10544163_SNP [dm6]	A	T	4.968e^-4	0.991	INTRON spri
3R	24793297	3R_24793297_SNP [dm3] 3R_28967575_SNP [dm6]	T	A	4.983e^-4	0.991	INTRON CG14521
3R	20993404	3R_20993404_SNP [dm3] 3R_25167682_SNP [dm6]	A	G	4.988e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	2277684	3L_2277684_SNP [dm3] 3L_2277684_SNP [dm6]	T	C	4.991e^-4	0.991	SYNONYMOUS_CODING yellow-g2
X	12869261	X_12869261_SNP [dm3] X_12975228_SNP [dm6]	A	T	4.992e^-4	0.991	NON_SYNONYMOUS_CODING CG12716 UPSTREAM CR43152
3L	840862	3L_840862_SNP [dm3] 3L_840862_SNP [dm6]	A	G	5.008e^-4	0.991	SYNONYMOUS_CODING CG13902 UPSTREAM Gr61a DOWNSTREAM CG13887	TF binding site mE1_TFBS_sens
2L	12265509	2L_12265509_SNP [dm3] 2L_12265509_SNP [dm6]	T	C	5.010e^-4	0.991	INTRON aret
2L	13123703	2L_13123703_SNP [dm3] 2L_13123703_SNP [dm6]	G	C	5.015e^-4	0.991	INTERGENIC
2R	3702921	2R_3702921_SNP [dm3] 2R_7815416_SNP [dm6]	G	C	5.029e^-4	0.991	UTR_3_PRIME CG1882 DOWNSTREAM CG1882
2L	10562475	2L_10562475_SNP [dm3] 2L_10562475_SNP [dm6]	T	C	5.033e^-4	0.991	INTRON Trim9
3R	9599210	3R_9599210_SNP [dm3] 3R_13773488_SNP [dm6]	G	T	5.036e^-4	0.991	INTRON CG9297
X	5884477	X_5884477_SNP [dm3] X_5990444_SNP [dm6]	C	T	5.038e^-4	0.991	UTR_5_PRIME CG5966 INTRON CG5966
3R	5152951	3R_5152951_SNP [dm3] 3R_9327229_SNP [dm6]	C	G	5.050e^-4	0.991	UTR_5_PRIME CG8861
2L	18202773	2L_18202773_SNP [dm3] 2L_18202773_SNP [dm6]	G	A	5.055e^-4	0.991	INTRON CG42750	TF binding site mE1_TFBS_cad
3R	21384191	3R_21384191_SNP [dm3] 3R_25558469_SNP [dm6]	T	A	5.056e^-4	0.991	INTRON msi
X	10833806	X_10833806_SNP [dm3] X_10939773_SNP [dm6]	G	C	5.063e^-4	0.991	INTRON Myo10A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15254479	3L_15254479_SNP [dm3] 3L_15261379_SNP [dm6]	A	G	5.063e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2L	13901680	2L_13901680_SNP [dm3] 2L_13901680_SNP [dm6]	G	A	5.068e^-4	0.991	SYNONYMOUS_CODING Smg5
3R	10292671	3R_10292671_SNP [dm3] 3R_14466949_SNP [dm6]	G	T	5.068e^-4	0.991	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	24195971	3R_24195971_SNP [dm3] 3R_28370249_SNP [dm6]	A	G	5.069e^-4	0.991	INTERGENIC
X	9976898	X_9976898_SNP [dm3] X_10082865_SNP [dm6]	G	A	5.073e^-4	0.991	UPSTREAM CG2972 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2L	10435610	2L_10435610_INS [dm3] 2L_10435610_INS [dm6]	C	CC	5.075e^-4	0.991	UTR_5_PRIME CG5337 UPSTREAM holn1
3L	20571575	3L_20571575_SNP [dm3] 3L_20578475_SNP [dm6]	T	G	5.075e^-4	0.991	INTERGENIC
3R	23856719	3R_23856719_SNP [dm3] 3R_28030997_SNP [dm6]	T	C	5.076e^-4	0.991	NON_SYNONYMOUS_CODING CG34362	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4101331	3L_4101331_SNP [dm3] 3L_4101331_SNP [dm6]	T	A	5.084e^-4	0.991	UPSTREAM CG14995 INTRON CG14995
2R	10730397	2R_10730397_DEL [dm3] 2R_14842892_DEL [dm6]	CA	C	5.087e^-4	0.991	UTR_3_PRIME NaPi-T DOWNSTREAM NaPi-T
2L	10526140	2L_10526140_SNP [dm3] 2L_10526140_SNP [dm6]	T	A	5.098e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	3531994	2L_3531994_SNP [dm3] 2L_3531994_SNP [dm6]	C	T	5.106e^-4	0.991	SYNONYMOUS_CODING Che-13	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_sens
2R	6544185	2R_6544185_SNP [dm3] 2R_10656680_SNP [dm6]	A	T	5.115e^-4	0.991	DOWNSTREAM CR44452 INTERGENIC
3L	2392989	3L_2392989_SNP [dm3] 3L_2392989_SNP [dm6]	G	A	5.122e^-4	0.991	INTRON CG45186	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
X	11310244	X_11310244_SNP [dm3] X_11416211_SNP [dm6]	T	C	5.128e^-4	0.991	UPSTREAM Gr10a INTRON Or10a
X	12692111	X_12692111_SNP [dm3] X_12798078_SNP [dm6]	G	A	5.131e^-4	0.991	INTRON Pde9
3L	12434956	3L_12434956_SNP [dm3] 3L_12441856_SNP [dm6]	G	A	5.131e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	3539955	3L_3539955_SNP [dm3] 3L_3539955_SNP [dm6]	C	G	5.135e^-4	0.991	INTRON Eip63E
3R	4951085	3R_4951085_DEL [dm3] 3R_9125363_DEL [dm6]	AAAGTAATTAAAA...	A	5.136e^-4	0.991	INTRON pum
X	19876316	X_19876316_SNP [dm3] X_19982283_SNP [dm6]	C	G	5.138e^-4	0.991	INTERGENIC
X	12741341	X_12741341_SNP [dm3] X_12847308_SNP [dm6]	C	T	5.139e^-4	0.991	INTRON Pde9
3L	6271498	3L_6271498_SNP [dm3] 3L_6278398_SNP [dm6]	G	C	5.140e^-4	0.991	INTERGENIC
3L	3999131	3L_3999131_SNP [dm3] 3L_3999131_SNP [dm6]	G	A	5.148e^-4	0.991	INTERGENIC
X	10052639	X_10052639_SNP [dm3] X_10158606_SNP [dm6]	A	G	5.149e^-4	0.991	UTR_5_PRIME CG43902 INTRON CR44894
2R	11855480	2R_11855480_SNP [dm3] 2R_15967975_SNP [dm6]	G	T	5.167e^-4	0.991	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
2L	3165595	2L_3165595_SNP [dm3] 2L_3165595_SNP [dm6]	G	A	5.169e^-4	0.991	INTRON Hydr2	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	18001529	2L_18001529_SNP [dm3] 2L_18001529_SNP [dm6]	A	C	5.170e^-4	0.991	INTERGENIC
3L	18436795	3L_18436795_SNP [dm3] 3L_18443695_SNP [dm6]	A	C	5.171e^-4	0.991	INTERGENIC
2R	17420539	2R_17420539_SNP [dm3] 2R_21533034_SNP [dm6]	A	T	5.180e^-4	0.991	UPSTREAM CR44725 INTRON Egfr
2L	4784483	2L_4784483_SNP [dm3] 2L_4784483_SNP [dm6]	T	G	5.181e^-4	0.991	INTRON CG15630
3R	16760731	3R_16760731_SNP [dm3] 3R_20935009_SNP [dm6]	G	T	5.182e^-4	0.991	INTRON CG31191
3L	4148445	3L_4148445_SNP [dm3] 3L_4148445_SNP [dm6]	C	T	5.191e^-4	0.991	UPSTREAM CG1299 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	17422850	2R_17422850_SNP [dm3] 2R_21535345_SNP [dm6]	T	A	5.191e^-4	0.991	DOWNSTREAM CG30286 INTRON Egfr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA
3R	14683680	3R_14683680_SNP [dm3] 3R_18857958_SNP [dm6]	T	C	5.206e^-4	0.991	INTERGENIC
X	5492712	X_5492712_SNP [dm3] X_5598679_SNP [dm6]	T	C	5.207e^-4	0.991	INTRON Vsx1	TF binding site BDTNP1_TFBS_da mE1_TFBS_Stat92E
3L	14142183	3L_14142183_SNP [dm3] 3L_14149083_SNP [dm6]	A	G	5.208e^-4	0.991	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	15102262	2L_15102262_SNP [dm3] 2L_15102262_SNP [dm6]	G	C	5.213e^-4	0.991	INTERGENIC
X	18254515	X_18254515_SNP [dm3] X_18360482_SNP [dm6]	C	T	5.215e^-4	0.991	INTRON CG6106	TF binding site mE1_TFBS_chinmo
3R	25412558	3R_25412558_SNP [dm3] 3R_29586836_SNP [dm6]	A	G	5.221e^-4	0.991	DOWNSTREAM CG7567 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2L	16676458	2L_16676458_SNP [dm3] 2L_16676458_SNP [dm6]	C	A	5.228e^-4	0.991	UPSTREAM her INTRON Trpgamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4137010	2L_4137010_SNP [dm3] 2L_4137010_SNP [dm6]	C	T	5.239e^-4	0.991	INTERGENIC
3L	4194762	3L_4194762_SNP [dm3] 3L_4194762_SNP [dm6]	G	A	5.245e^-4	0.991	NON_SYNONYMOUS_CODING CG43367 UTR_5_PRIME CG43367 DOWNSTREAM tipE	TF binding site BDTNP1_TFBS_dl
3L	6629670	3L_6629670_SNP [dm3] 3L_6636570_SNP [dm6]	G	C	5.245e^-4	0.991	INTERGENIC
3R	17055436	3R_17055436_DEL [dm3] 3R_21229714_DEL [dm6]	TGGGAAAATAATT...	T	5.257e^-4	0.991	DOWNSTREAM e & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	2523826	2R_2523826_SNP [dm3] 2R_6636321_SNP [dm6]	T	A	5.258e^-4	0.991	UPSTREAM Bap170 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	19833608	2R_19833608_SNP [dm3] 2R_23946085_SNP [dm6]	G	T	5.259e^-4	0.991	SPLICE_SITE_REGION Galphas DOWNSTREAM CG13565 INTRON Galphas
3R	13195418	3R_13195418_SNP [dm3] 3R_17369696_SNP [dm6]	A	G	5.261e^-4	0.991	INTERGENIC
3L	16932758	3L_16932758_SNP [dm3] 3L_16939658_SNP [dm6]	T	A	5.264e^-4	0.991	SYNONYMOUS_CODING Cpr73D UPSTREAM CG13022	TF binding site mE1_TFBS_chinmo
2R	11853293	2R_11853293_SNP [dm3] 2R_15965788_SNP [dm6]	A	G	5.280e^-4	0.991	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	27526803	3R_27526803_DEL [dm3] 3R_31701081_DEL [dm6]	TACATATCTGTGCGGCCT...	T	5.291e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	10467217	2L_10467217_SNP [dm3] 2L_10467217_SNP [dm6]	T	G	5.296e^-4	0.991	INTRON RluA-1
2L	5661957	2L_5661957_SNP [dm3] 2L_5661957_SNP [dm6]	G	T	5.298e^-4	0.991	UPSTREAM Hsp60C EXON CR44821
2R	19819388	2R_19819388_SNP [dm3] 2R_23931865_SNP [dm6]	C	T	5.306e^-4	0.991	SYNONYMOUS_CODING Ca-P60A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	23261597	3R_23261597_SNP [dm3] 3R_27435875_SNP [dm6]	G	A	5.318e^-4	0.991	INTRON side
3R	20672365	3R_20672365_SNP [dm3] 3R_24846643_SNP [dm6]	A	G	5.319e^-4	0.991	UPSTREAM Esp INTRON Esp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25736050	3R_25736050_SNP [dm3] 3R_29910328_SNP [dm6]	A	C	5.329e^-4	0.991	INTRON CG31036
2L	2390555	2L_2390555_SNP [dm3] 2L_2390555_SNP [dm6]	C	G	5.330e^-4	0.991	SYNONYMOUS_CODING CG43750
2R	18586714	2R_18586714_SNP [dm3] 2R_22699209_SNP [dm6]	C	G	5.331e^-4	0.991	SYNONYMOUS_CODING robo	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18206084	2L_18206084_SNP [dm3] 2L_18206084_SNP [dm6]	T	C	5.334e^-4	0.991	INTRON CG42750
3R	3390215	3R_3390215_SNP [dm3] 3R_7564493_SNP [dm6]	G	C	5.335e^-4	0.991	INTERGENIC
3L	12369767	3L_12369767_SNP [dm3] 3L_12376667_SNP [dm6]	C	A	5.337e^-4	0.991	INTRON Ncc69
3R	17701753	3R_17701753_SNP [dm3] 3R_21876031_SNP [dm6]	A	G	5.337e^-4	0.991	INTRON CG6656
3L	4212419	3L_4212419_SNP [dm3] 3L_4212419_SNP [dm6]	A	G	5.346e^-4	0.991	SYNONYMOUS_CODING Cpr64Ac UPSTREAM Cpr64Ab INTRON CG43367	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10867805	2R_10867805_SNP [dm3] 2R_14980300_SNP [dm6]	C	T	5.349e^-4	0.991	UTR_3_PRIME ckn UPSTREAM pcs
X	7455796	X_7455796_SNP [dm3] X_7561763_SNP [dm6]	C	A	5.349e^-4	0.991	INTERGENIC
3L	7728460	3L_7728460_SNP [dm3] 3L_7735360_SNP [dm6]	C	A	5.361e^-4	0.991	INTRON CG32373 & 1 other
X	5492709	X_5492709_SNP [dm3] X_5598676_SNP [dm6]	T	A	5.363e^-4	0.991	INTRON Vsx1	TF binding site BDTNP1_TFBS_da mE1_TFBS_Stat92E
2L	21355940	2L_21355940_INS [dm3] 2L_21355940_INS [dm6]	A	ATTGAATTGAAATTGA...	5.364e^-4	0.991	INTRON Tsp39D
2R	2516326	2R_2516326_SNP [dm3] 2R_6628821_SNP [dm6]	C	A	5.367e^-4	0.991	INTRON Vha16-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	7087010	2L_7087010_SNP [dm3] 2L_7087010_SNP [dm6]	A	C	5.369e^-4	0.991	INTERGENIC
2L	971639	2L_971639_SNP [dm3] 2L_971639_SNP [dm6]	G	A	5.377e^-4	0.991	INTERGENIC
2R	19835417	2R_19835417_SNP [dm3] 2R_23947894_SNP [dm6]	A	T	5.388e^-4	0.991	UTR_3_PRIME CG13565 DOWNSTREAM Galphas INTRON CG13565
X	14628581	X_14628581_SNP [dm3] X_14734548_SNP [dm6]	T	C	5.391e^-4	0.991	INTRON NetB
3L	14040926	3L_14040926_SNP [dm3] 3L_14047826_SNP [dm6]	T	C	5.394e^-4	0.991	INTRON blue	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	1979959	X_1979959_SNP [dm3] X_2085926_SNP [dm6]	T	G	5.395e^-4	0.991	INTRON Unc-76	TF binding site mE1_TFBS_chinmo
2L	18605819	2L_18605819_SNP [dm3] 2L_18605819_SNP [dm6]	G	T	5.397e^-4	0.991	UPSTREAM CG31789 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	6213323	2L_6213323_SNP [dm3] 2L_6213323_SNP [dm6]	G	A	5.399e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	16040819	3L_16040819_SNP [dm3] 3L_16047719_SNP [dm6]	C	T	5.400e^-4	0.991	UPSTREAM th INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
3R	10861692	3R_10861692_SNP [dm3] 3R_15035970_SNP [dm6]	T	C	5.404e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	14148581	2R_14148581_SNP [dm3] 2R_18261076_SNP [dm6]	C	T	5.407e^-4	0.991	INTERGENIC
3R	16904703	3R_16904703_SNP [dm3] 3R_21078981_SNP [dm6]	G	T	5.407e^-4	0.991	INTRON HHEX
3R	12960707	3R_12960707_SNP [dm3] 3R_17134985_SNP [dm6]	C	T	5.407e^-4	0.991	SYNONYMOUS_CODING CG31267
2L	16785886	2L_16785886_SNP [dm3] 2L_16785886_SNP [dm6]	C	T	5.408e^-4	0.991	INTRON Mhc	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16040598	3L_16040598_INS [dm3] 3L_16047498_INS [dm6]	A	AA	5.411e^-4	0.991	UPSTREAM th INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	12805363	3L_12805363_SNP [dm3] 3L_12812263_SNP [dm6]	A	C	5.413e^-4	0.991	DOWNSTREAM CG10754 INTRON Sap130	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	1584723	2L_1584723_SNP [dm3] 2L_1584723_SNP [dm6]	A	G	5.415e^-4	0.991	DOWNSTREAM CG10869 INTRON haf
2L	16955833	2L_16955833_SNP [dm3] 2L_16955833_SNP [dm6]	T	G	5.418e^-4	0.991	INTERGENIC
3R	9599335	3R_9599335_SNP [dm3] 3R_13773613_SNP [dm6]	T	C	5.419e^-4	0.991	INTRON CG9297
2R	13297069	2R_13297069_SNP [dm3] 2R_17409564_SNP [dm6]	C	T	5.427e^-4	0.991	SYNONYMOUS_CODING CG30101	TF binding site mE1_TFBS_HSA
2R	13413523	2R_13413523_SNP [dm3] 2R_17526018_SNP [dm6]	G	C	5.432e^-4	0.991	SYNONYMOUS_CODING Patronin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18202769	2L_18202769_DEL [dm3] 2L_18202769_DEL [dm6]	TG	T	5.432e^-4	0.991	INTRON CG42750	TF binding site mE1_TFBS_cad
3L	12015931	3L_12015931_SNP [dm3] 3L_12022831_SNP [dm6]	T	C	5.450e^-4	0.991	INTRON rols
3R	4468018	3R_4468018_SNP [dm3] 3R_8642296_SNP [dm6]	C	A	5.460e^-4	0.991	DOWNSTREAM tRNA:Y1:85Ae & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	13295532	3R_13295532_SNP [dm3] 3R_17469810_SNP [dm6]	T	C	5.472e^-4	0.991	INTERGENIC
3L	23848482	3L_23848482_SNP [dm3] 3L_23855382_SNP [dm6]	G	T	5.475e^-4	0.991	INTRON CG40470
2L	2396695	2L_2396695_SNP [dm3] 2L_2396695_SNP [dm6]	C	T	5.491e^-4	0.991	INTRON VGlut
3R	15302346	3R_15302346_SNP [dm3] 3R_19476624_SNP [dm6]	A	T	5.492e^-4	0.991	UPSTREAM Dys INTRON Dys	TF binding site mE1_TFBS_inv
3R	15302353	3R_15302353_MNP [dm3] 3R_19476631_MNP [dm6]	CATT	ACCC	5.492e^-4	0.991	UPSTREAM Dys INTRON Dys
3R	15302365	3R_15302365_DEL [dm3] 3R_19476643_DEL [dm6]	TA	T	5.492e^-4	0.991	UPSTREAM Dys INTRON Dys
3R	15302368	3R_15302368_SNP [dm3] 3R_19476646_SNP [dm6]	G	T	5.492e^-4	0.991	UPSTREAM Dys INTRON Dys
2L	13912873	2L_13912873_SNP [dm3] 2L_13912873_SNP [dm6]	T	C	5.493e^-4	0.991	DOWNSTREAM Acyp INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17422853	2R_17422853_SNP [dm3] 2R_21535348_SNP [dm6]	C	A	5.495e^-4	0.991	DOWNSTREAM CG30286 INTRON Egfr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA
2R	18611638	2R_18611638_SNP [dm3] 2R_22724133_SNP [dm6]	T	C	5.495e^-4	0.991	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	16556668	3L_16556668_SNP [dm3] 3L_16563568_SNP [dm6]	A	T	5.502e^-4	0.991	UTR_3_PRIME Mipp1 DOWNSTREAM Mipp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
2L	8286147	2L_8286147_SNP [dm3] 2L_8286147_SNP [dm6]	A	G	5.507e^-4	0.991	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	12072669	3R_12072669_SNP [dm3] 3R_16246947_SNP [dm6]	C	T	5.513e^-4	0.991	INTRON tara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	26366987	3R_26366987_SNP [dm3] 3R_30541265_SNP [dm6]	C	A	5.518e^-4	0.991	INTRON tmod
X	12675849	X_12675849_SNP [dm3] X_12781816_SNP [dm6]	C	T	5.519e^-4	0.991	INTRON CG32647
2R	3301221	2R_3301221_SNP [dm3] 2R_7413716_SNP [dm6]	C	A	5.534e^-4	0.991	INTERGENIC
3L	4807984	3L_4807984_SNP [dm3] 3L_4807984_SNP [dm6]	G	A	5.534e^-4	0.991	SYNONYMOUS_CODING Dhc64C UPSTREAM CG18808	TF binding site mE1_TFBS_cad
2L	18202709	2L_18202709_SNP [dm3] 2L_18202709_SNP [dm6]	C	T	5.534e^-4	0.991	INTRON CG42750	TF binding site mE1_TFBS_cad
3R	3259370	3R_3259370_SNP [dm3] 3R_7433648_SNP [dm6]	A	G	5.535e^-4	0.991	INTERGENIC
2R	9059226	2R_9059226_SNP [dm3] 2R_13171721_SNP [dm6]	G	C	5.551e^-4	0.991	UPSTREAM CR45142 DOWNSTREAM Spt-I INTRON AGBE	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	17063782	3R_17063782_SNP [dm3] 3R_21238060_SNP [dm6]	C	A	5.556e^-4	0.991	UPSTREAM e INTERGENIC	regulatory region REDfly_CRMs
X	9224569	X_9224569_INS [dm3] X_9330536_INS [dm6]	C	CTTTGTGTGTAGGAC...	5.563e^-4	0.991	UPSTREAM CG34450 DOWNSTREAM CG34449 INTRON CG34449
2R	8368651	2R_8368651_SNP [dm3] 2R_12481146_SNP [dm6]	G	C	5.568e^-4	0.991	SYNONYMOUS_CODING Dh44-R2
3R	16580282	3R_16580282_SNP [dm3] 3R_20754560_SNP [dm6]	G	C	5.571e^-4	0.991	DOWNSTREAM CG42322 INTRON CG42322
2R	19715730	2R_19715730_SNP [dm3] 2R_23828207_SNP [dm6]	A	G	5.594e^-4	0.991	INTRON CG5549
2L	1614023	2L_1614023_SNP [dm3] 2L_1614023_SNP [dm6]	G	T	5.596e^-4	0.991	SYNONYMOUS_CODING RFeSP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

sd_ChillComaRec phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results