DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.345e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1687 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

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Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	5103716	2L_5103716_SNP [dm3] 2L_5103716_SNP [dm6]	A	C	2.011e^-7	0.377	INTRON Msp300
2R	4966701	2R_4966701_SNP [dm3] 2R_9079196_SNP [dm6]	C	T	9.179e^-7	0.58	INTRON CG8083
2R	4966982	2R_4966982_SNP [dm3] 2R_9079477_SNP [dm6]	T	A	9.273e^-7	0.58	INTRON CG8083
2R	4966667	2R_4966667_SNP [dm3] 2R_9079162_SNP [dm6]	C	A	2.267e^-6	0.675	INTRON CG8083
3R	20022991	3R_20022991_SNP [dm3] 3R_24197269_SNP [dm6]	T	G	3.273e^-6	0.675	UTR_3_PRIME twin DOWNSTREAM twin & 1 other
3R	16304247	3R_16304247_SNP [dm3] 3R_20478525_SNP [dm6]	A	G	4.139e^-6	0.675	INTRON Gfrl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13668018	3L_13668018_SNP [dm3] 3L_13674918_SNP [dm6]	T	A	4.423e^-6	0.675	INTRON bru-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11970942	X_11970942_SNP [dm3] X_12076909_SNP [dm6]	C	T	4.793e^-6	0.675	INTRON CR43960 & 1 other
X	11970928	X_11970928_SNP [dm3] X_12076895_SNP [dm6]	G	C	5.803e^-6	0.675	INTRON CR43960 & 1 other
2L	8573793	2L_8573793_SNP [dm3] 2L_8573793_SNP [dm6]	G	C	6.458e^-6	0.675	INTRON Sema-1a
3R	19205965	3R_19205965_SNP [dm3] 3R_23380243_SNP [dm6]	T	A	6.626e^-6	0.675	INTRON CG4393	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4979138	2R_4979138_SNP [dm3] 2R_9091633_SNP [dm6]	T	C	6.694e^-6	0.675	NON_SYNONYMOUS_CODING CG8080 DOWNSTREAM CG13741
2L	20726434	2L_20726434_SNP [dm3] 2L_20726434_SNP [dm6]	G	A	6.768e^-6	0.675	NON_SYNONYMOUS_CODING CG9316 DOWNSTREAM CG9317
2L	20726435	2L_20726435_SNP [dm3] 2L_20726435_SNP [dm6]	A	G	7.438e^-6	0.675	NON_SYNONYMOUS_CODING CG9316 DOWNSTREAM CG9317
2R	4965186	2R_4965186_SNP [dm3] 2R_9077681_SNP [dm6]	C	T	7.844e^-6	0.675	DOWNSTREAM ana INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1908274	2L_1908274_SNP [dm3] 2L_1908274_SNP [dm6]	A	C	8.231e^-6	0.675	INTRON CG7337
2R	4980022	2R_4980022_SNP [dm3] 2R_9092517_SNP [dm6]	T	A	8.484e^-6	0.675	UTR_5_PRIME CG8080 UTR_3_PRIME CG13741 UPSTREAM CG8080	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	11970932	X_11970932_SNP [dm3] X_12076899_SNP [dm6]	C	T	9.124e^-6	0.675	INTRON CR43960 & 1 other
2R	17759009	2R_17759009_SNP [dm3] 2R_21871504_SNP [dm6]	G	T	9.150e^-6	0.675	UPSTREAM Fili INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	4965035	2R_4965035_SNP [dm3] 2R_9077530_SNP [dm6]	A	T	9.185e^-6	0.675	UTR_3_PRIME ana	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4966408	2R_4966408_SNP [dm3] 2R_9078903_SNP [dm6]	A	T	9.265e^-6	0.675	START_GAINED CG8083 UTR_5_PRIME CG8083
3R	14130642	3R_14130642_SNP [dm3] 3R_18304920_SNP [dm6]	C	A	9.277e^-6	0.675	SPLICE_SITE_REGION PKD INTRON PKD	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13668131	3L_13668131_SNP [dm3] 3L_13675031_SNP [dm6]	T	A	9.627e^-6	0.675	INTRON bru-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13100332	X_13100332_SNP [dm3] X_13206299_SNP [dm6]	T	G	9.852e^-6	0.675	INTRON sno
3L	12962455	3L_12962455_SNP [dm3] 3L_12969355_SNP [dm6]	G	A	9.890e^-6	0.675	INTERGENIC
3L	2191418	3L_2191418_SNP [dm3] 3L_2191418_SNP [dm6]	T	A	1.021e^-5	0.675	INTRON CG5707
X	11970951	X_11970951_SNP [dm3] X_12076918_SNP [dm6]	C	T	1.026e^-5	0.675	INTRON CR43960 & 1 other
2L	19637182	2L_19637182_SNP [dm3] 2L_19637182_SNP [dm6]	G	A	1.033e^-5	0.675	INTRON Lar
2R	4986493	2R_4986493_SNP [dm3] 2R_9098988_SNP [dm6]	C	T	1.044e^-5	0.675	UPSTREAM CG8078 INTRON CG8777	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11970948	X_11970948_SNP [dm3] X_12076915_SNP [dm6]	A	C	1.111e^-5	0.675	INTRON CR43960 & 1 other
3R	11394603	3R_11394603_SNP [dm3] 3R_15568881_SNP [dm6]	A	T	1.119e^-5	0.675	INTERGENIC
3L	12555589	3L_12555589_SNP [dm3] 3L_12562489_SNP [dm6]	T	C	1.178e^-5	0.675	INTRON sowah
X	12020591	X_12020591_SNP [dm3] X_12126558_SNP [dm6]	C	T	1.187e^-5	0.675	INTRON Ten-a
X	11970962	X_11970962_SNP [dm3] X_12076929_SNP [dm6]	A	T	1.261e^-5	0.696	INTRON CR43960 & 1 other
2L	20726548	2L_20726548_SNP [dm3] 2L_20726548_SNP [dm6]	C	A	1.399e^-5	0.734	UTR_5_PRIME CG9316 DOWNSTREAM CG9317
2L	4139274	2L_4139274_DEL [dm3] 2L_4139274_DEL [dm6]	TT	T	1.409e^-5	0.734	INTERGENIC
2R	17759046	2R_17759046_INS [dm3] 2R_21871541_INS [dm6]	A	ACGTTTTTATGCGATGTATA...	1.471e^-5	0.746	UPSTREAM Fili INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	10973238	2L_10973238_SNP [dm3] 2L_10973238_SNP [dm6]	C	T	1.684e^-5	0.809	UTR_3_PRIME CG16743 DOWNSTREAM abo
3L	10032551	3L_10032551_SNP [dm3] 3L_10039451_SNP [dm6]	T	C	1.699e^-5	0.809	INTRON dpr6
2R	4971530	2R_4971530_SNP [dm3] 2R_9084025_SNP [dm6]	T	C	1.724e^-5	0.809	SPLICE_SITE_REGION CNT1 DOWNSTREAM CG13742 INTRON CNT1
3L	17239384	3L_17239384_SNP [dm3] 3L_17246284_SNP [dm6]	A	G	1.896e^-5	0.83	INTRON CR43870	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4998103	2R_4998103_SNP [dm3] 2R_9110598_SNP [dm6]	C	T	1.907e^-5	0.83	UPSTREAM Pmm45A & 1 other DOWNSTREAM Mys45A INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
X	11970958	X_11970958_SNP [dm3] X_12076925_SNP [dm6]	G	A	1.909e^-5	0.83	INTRON CR43960 & 1 other
2L	8573939	2L_8573939_SNP [dm3] 2L_8573939_SNP [dm6]	T	A	2.061e^-5	0.83	INTRON Sema-1a
3L	10032712	3L_10032712_SNP [dm3] 3L_10039612_SNP [dm6]	A	C	2.080e^-5	0.83	INTRON dpr6	TF binding site BDTNP1_TFBS_dl
2L	3685668	2L_3685668_SNP [dm3] 2L_3685668_SNP [dm6]	G	A	2.132e^-5	0.83	INTRON CG34340
2R	4995062	2R_4995062_SNP [dm3] 2R_9107557_SNP [dm6]	G	A	2.221e^-5	0.83	SYNONYMOUS_CODING Pmm45A DOWNSTREAM Vang	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5398896	2L_5398896_DEL [dm3] 2L_5398896_DEL [dm6]	TCGATTTCTGGATTGCT...	T	2.222e^-5	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12394399	3L_12394399_SNP [dm3] 3L_12401299_SNP [dm6]	C	T	2.273e^-5	0.83	SYNONYMOUS_CODING Smyd4 DOWNSTREAM CG32103	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13763690	2L_13763690_SNP [dm3] 2L_13763690_SNP [dm6]	C	T	2.279e^-5	0.83	INTRON TM9SF4
3R	2791123	3R_2791123_SNP [dm3] 3R_6965401_SNP [dm6]	T	G	2.321e^-5	0.83	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	3147824	X_3147824_SNP [dm3] X_3253791_SNP [dm6]	A	C	2.354e^-5	0.83	INTRON dnc
3R	21034718	3R_21034718_SNP [dm3] 3R_25208996_SNP [dm6]	T	A	2.412e^-5	0.83	UPSTREAM CG13654 & 1 other INTRON CG13654	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	4140922	2L_4140922_SNP [dm3] 2L_4140922_SNP [dm6]	C	A	2.414e^-5	0.83	INTERGENIC
2R	4965618	2R_4965618_SNP [dm3] 2R_9078113_SNP [dm6]	A	T	2.434e^-5	0.83	UPSTREAM CG8083 DOWNSTREAM ana INTERGENIC
X	12001653	X_12001653_SNP [dm3] X_12107620_SNP [dm6]	G	C	2.502e^-5	0.838	NON_SYNONYMOUS_CODING CG2750 INTRON CR43960 & 1 other
2R	12100825	2R_12100825_DEL [dm3] 2R_16213320_DEL [dm6]	CAGC	C	2.607e^-5	0.846	INTRON mrj	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	10649577	3L_10649577_SNP [dm3] 3L_10656477_SNP [dm6]	T	C	2.621e^-5	0.846	INTRON CG32066	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5103745	2L_5103745_SNP [dm3] 2L_5103745_SNP [dm6]	T	C	2.660e^-5	0.846	INTRON Msp300
2L	2914066	2L_2914066_SNP [dm3] 2L_2914066_SNP [dm6]	G	A	2.721e^-5	0.848	INTRON lilli
3L	17453493	3L_17453493_SNP [dm3] 3L_17460393_SNP [dm6]	T	A	2.840e^-5	0.848	INTRON CR44565
3L	17453706	3L_17453706_SNP [dm3] 3L_17460606_SNP [dm6]	A	T	2.840e^-5	0.848	DOWNSTREAM CR44565 INTERGENIC
3R	14025729	3R_14025729_SNP [dm3] 3R_18200007_SNP [dm6]	G	C	2.877e^-5	0.848	UPSTREAM CG7985 & 1 other INTRON CG7985	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2R	17685847	2R_17685847_SNP [dm3] 2R_21798342_SNP [dm6]	A	G	2.895e^-5	0.848	SYNONYMOUS_CODING CG18735 DOWNSTREAM CG4386	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16293950	2L_16293950_SNP [dm3] 2L_16293950_SNP [dm6]	T	A	2.939e^-5	0.848	UPSTREAM CG13258 & 2 others INTERGENIC
3R	21034653	3R_21034653_SNP [dm3] 3R_25208931_SNP [dm6]	C	G	3.067e^-5	0.87	UPSTREAM CG13654 & 1 other INTRON CG13654	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	17453151	3L_17453151_SNP [dm3] 3L_17460051_SNP [dm6]	T	C	3.133e^-5	0.87	UPSTREAM CR44565 INTERGENIC
2R	6442232	2R_6442232_SNP [dm3] 2R_10554727_SNP [dm6]	T	C	3.158e^-5	0.87	INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
X	17511939	X_17511939_SNP [dm3] X_17617906_SNP [dm6]	A	C	3.266e^-5	0.87	INTERGENIC
2L	1908235	2L_1908235_SNP [dm3] 2L_1908235_SNP [dm6]	T	C	3.289e^-5	0.87	INTRON CG7337
2R	6796850	2R_6796850_SNP [dm3] 2R_10909345_SNP [dm6]	C	G	3.294e^-5	0.87	UPSTREAM Obp47a INTERGENIC
X	5258976	X_5258976_SNP [dm3] X_5364943_SNP [dm6]	T	A	3.348e^-5	0.872	UPSTREAM SK INTRON SK	TF binding site BDTNP1_TFBS_dl
3R	21034681	3R_21034681_SNP [dm3] 3R_25208959_SNP [dm6]	C	T	3.418e^-5	0.878	UPSTREAM CG13654 & 1 other INTRON CG13654	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	1908190	2L_1908190_SNP [dm3] 2L_1908190_SNP [dm6]	T	A	3.509e^-5	0.889	INTRON CG7337
X	10285676	X_10285676_SNP [dm3] X_10391643_SNP [dm6]	A	G	3.572e^-5	0.893	INTRON flw
3R	20022978	3R_20022978_SNP [dm3] 3R_24197256_SNP [dm6]	C	T	3.718e^-5	0.901	UTR_3_PRIME twin DOWNSTREAM twin & 1 other
3L	10033852	3L_10033852_INS [dm3] 3L_10040752_INS [dm6]	G	GT	3.737e^-5	0.901	INTRON dpr6
2R	5008245	2R_5008245_SNP [dm3] 2R_9120740_SNP [dm6]	C	T	3.784e^-5	0.901	UTR_3_PRIME Su_var_2-10 DOWNSTREAM Su_var_2-10 INTRON Su_var_2-10
2L	1908158	2L_1908158_SNP [dm3] 2L_1908158_SNP [dm6]	A	T	3.797e^-5	0.901	INTRON CG7337
3R	3285710	3R_3285710_SNP [dm3] 3R_7459988_SNP [dm6]	G	A	3.841e^-5	0.901	INTERGENIC
3L	18669661	3L_18669661_SNP [dm3] 3L_18676561_SNP [dm6]	G	C	3.895e^-5	0.902	SYNONYMOUS_CODING GNBP1
2R	15069206	2R_15069206_SNP [dm3] 2R_19181701_SNP [dm6]	T	G	4.087e^-5	0.935	INTRON hppy
2L	10349468	2L_10349468_SNP [dm3] 2L_10349468_SNP [dm6]	A	T	4.146e^-5	0.937	INTRON CG34367
3R	3285717	3R_3285717_SNP [dm3] 3R_7459995_SNP [dm6]	C	A	4.287e^-5	0.954	INTERGENIC
X	17511938	X_17511938_SNP [dm3] X_17617905_SNP [dm6]	C	A	4.342e^-5	0.954	INTERGENIC
3L	11546358	3L_11546358_SNP [dm3] 3L_11553258_SNP [dm6]	A	G	4.379e^-5	0.954	UPSTREAM mir-4968 & 1 other INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	18951474	3L_18951474_SNP [dm3] 3L_18958374_SNP [dm6]	T	G	4.463e^-5	0.954	INTERGENIC
2L	16921624	2L_16921624_SNP [dm3] 2L_16921624_SNP [dm6]	G	A	4.507e^-5	0.954	INTERGENIC
2R	4997694	2R_4997694_SNP [dm3] 2R_9110189_SNP [dm6]	C	G	4.528e^-5	0.954	UPSTREAM Pmm45A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
3L	15880269	3L_15880269_SNP [dm3] 3L_15887169_SNP [dm6]	T	A	4.769e^-5	0.983	INTRON pHCl
3R	3121037	3R_3121037_SNP [dm3] 3R_7295315_SNP [dm6]	C	T	4.806e^-5	0.983	INTRON rn
2R	10333070	2R_10333070_SNP [dm3] 2R_14445565_SNP [dm6]	T	C	4.836e^-5	0.983	INTRON Oaz
2R	5014151	2R_5014151_SNP [dm3] 2R_9126646_SNP [dm6]	G	A	4.900e^-5	0.983	INTRON CG18659	TF binding site mE1_TFBS_sens
X	3169710	X_3169710_SNP [dm3] X_3275677_SNP [dm6]	T	G	4.965e^-5	0.983	INTRON dnc
2L	3583614	2L_3583614_SNP [dm3] 2L_3583614_SNP [dm6]	G	A	5.075e^-5	0.983	INTERGENIC
2L	1626980	2L_1626980_SNP [dm3] 2L_1626980_SNP [dm6]	G	T	5.209e^-5	0.983	UPSTREAM CR44603 INTERGENIC
2R	12370624	2R_12370624_SNP [dm3] 2R_16483119_SNP [dm6]	G	A	5.217e^-5	0.983	INTERGENIC
X	3978280	X_3978280_SNP [dm3] X_4084247_SNP [dm6]	T	C	5.230e^-5	0.983	SYNONYMOUS_CODING CG43689	TF binding site mE1_TFBS_chinmo
2L	13334865	2L_13334865_SNP [dm3] 2L_13334865_SNP [dm6]	A	G	5.241e^-5	0.983	INTERGENIC
2R	10148146	2R_10148146_DEL [dm3] 2R_14260641_DEL [dm6]	GAC	G	5.280e^-5	0.983	UTR_3_PRIME beta4GalNAcTA DOWNSTREAM CG8547

Showing 1 to 100 of 1,000 entries

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GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.070e^-2)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.08731

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	4.8884	0.027

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1339 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Show entries

Search:

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	1007191	2R_1007191_SNP [dm3] 2R_5119686_SNP [dm6]	C	T	6.589e^-7	1	INTRON gus
X	22240957	X_22240957_SNP [dm3] X_22839121_SNP [dm6]	A	C	2.124e^-6	1	INTRON fog & 1 other
3L	10943167	3L_10943167_SNP [dm3] 3L_10950067_SNP [dm6]	T	G	2.294e^-6	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	22236222	X_22236222_SNP [dm3] X_22834386_SNP [dm6]	A	G	3.153e^-6	1	UPSTREAM mir-2491 INTRON fog & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2L	1935728	2L_1935728_SNP [dm3] 2L_1935728_SNP [dm6]	T	A	4.430e^-6	1	INTRON CG7337	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1935747	2L_1935747_SNP [dm3] 2L_1935747_SNP [dm6]	T	C	4.509e^-6	1	SYNONYMOUS_CODING CG7337	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	15320567	X_15320567_SNP [dm3] X_15426534_SNP [dm6]	T	G	4.805e^-6	1	INTRON Cngl
3L	11065924	3L_11065924_SNP [dm3] 3L_11072824_SNP [dm6]	C	A	5.324e^-6	1	SYNONYMOUS_CODING Mocs1 UTR_3_PRIME Mocs1 DOWNSTREAM l_3_01239	TF binding site mE1_TFBS_sens
X	22242039	X_22242039_SNP [dm3] X_22840203_SNP [dm6]	A	T	6.509e^-6	1	INTRON fog & 1 other
3R	10743641	3R_10743641_SNP [dm3] 3R_14917919_SNP [dm6]	G	A	8.164e^-6	1	UPSTREAM Sdr INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	16660640	2R_16660640_SNP [dm3] 2R_20773135_SNP [dm6]	G	T	1.082e^-5	1	UPSTREAM CG13443 INTERGENIC
3R	9530292	3R_9530292_SNP [dm3] 3R_13704570_SNP [dm6]	G	A	1.092e^-5	1	SYNONYMOUS_CODING Adgf-D
2R	993500	2R_993500_SNP [dm3] 2R_5105995_SNP [dm6]	T	C	1.102e^-5	1	INTERGENIC	TF binding site mE1_TFBS_cad transposable element FlyBase
2R	1016061	2R_1016061_SNP [dm3] 2R_5128556_SNP [dm6]	C	A	1.140e^-5	1	UPSTREAM gus INTRON CR43256	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn
2L	2589409	2L_2589409_SNP [dm3] 2L_2589409_SNP [dm6]	A	T	1.230e^-5	1	INTERGENIC
3L	13823737	3L_13823737_SNP [dm3] 3L_13830637_SNP [dm6]	G	A	1.239e^-5	1	INTERGENIC
3L	10738870	3L_10738870_SNP [dm3] 3L_10745770_SNP [dm6]	G	A	1.244e^-5	1	INTERGENIC
3L	10706516	3L_10706516_SNP [dm3] 3L_10713416_SNP [dm6]	G	A	1.273e^-5	1	INTERGENIC
3L	13823742	3L_13823742_INS [dm3] 3L_13830642_INS [dm6]	A	AAGGG	1.474e^-5	1	INTERGENIC
3R	10743659	3R_10743659_SNP [dm3] 3R_14917937_SNP [dm6]	G	A	1.562e^-5	1	UPSTREAM Sdr INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	1038803	2R_1038803_SNP [dm3] 2R_5151298_SNP [dm6]	A	T	1.602e^-5	1	INTRON Atf6
2R	1042008	2R_1042008_SNP [dm3] 2R_5154503_SNP [dm6]	G	T	1.712e^-5	1	UTR_3_PRIME Atf6 DOWNSTREAM Atf6	transposable element FlyBase
2R	1039846	2R_1039846_INS [dm3] 2R_5152341_INS [dm6]	A	AA	1.782e^-5	1	INTRON Atf6	transposable element FlyBase
3R	10743566	3R_10743566_SNP [dm3] 3R_14917844_SNP [dm6]	A	C	2.271e^-5	1	UPSTREAM Sdr INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	6103096	3L_6103096_SNP [dm3] 3L_6109996_SNP [dm6]	A	G	2.296e^-5	1	INTRON Ets65A	TF binding site mE1_TFBS_cad
3L	10943127	3L_10943127_SNP [dm3] 3L_10950027_SNP [dm6]	T	C	2.473e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1016218	2R_1016218_SNP [dm3] 2R_5128713_SNP [dm6]	A	T	2.474e^-5	1	UPSTREAM gus INTRON CR43256	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10893021	3R_10893021_SNP [dm3] 3R_15067299_SNP [dm6]	G	A	2.480e^-5	1	INTRON dpr9
2L	12633558	2L_12633558_SNP [dm3] 2L_12633558_SNP [dm6]	A	T	2.509e^-5	1	INTRON Ref2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3R	10743707	3R_10743707_SNP [dm3] 3R_14917985_SNP [dm6]	A	C	2.647e^-5	1	UPSTREAM Sdr INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	993213	2R_993213_SNP [dm3] 2R_5105708_SNP [dm6]	A	C	2.722e^-5	1	INTERGENIC	TF binding site mE1_TFBS_cad transposable element FlyBase
2R	991930	2R_991930_SNP [dm3] 2R_5104425_SNP [dm6]	G	T	2.762e^-5	1	INTERGENIC	transposable element FlyBase
3L	10943177	3L_10943177_SNP [dm3] 3L_10950077_SNP [dm6]	C	A	2.782e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1469141	3L_1469141_SNP [dm3] 3L_1469141_SNP [dm6]	A	G	2.871e^-5	1	DOWNSTREAM rho INTRON Ptp61F
3L	7906528	3L_7906528_SNP [dm3] 3L_7913428_SNP [dm6]	G	A	2.962e^-5	1	SYNONYMOUS_CODING CG8281 DOWNSTREAM CG8111	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	16508299	3R_16508299_SNP [dm3] 3R_20682577_SNP [dm6]	A	T	3.283e^-5	1	INTERGENIC
3R	18850728	3R_18850728_SNP [dm3] 3R_23025006_SNP [dm6]	G	T	3.427e^-5	1	SYNONYMOUS_CODING lmd UPSTREAM lmd	TF binding site mE1_TFBS_cad
3L	13823735	3L_13823735_SNP [dm3] 3L_13830635_SNP [dm6]	A	T	3.612e^-5	1	INTERGENIC
3R	10743654	3R_10743654_SNP [dm3] 3R_14917932_SNP [dm6]	G	T	3.810e^-5	1	UPSTREAM Sdr INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	16660610	2R_16660610_SNP [dm3] 2R_20773105_SNP [dm6]	T	A	3.869e^-5	1	UPSTREAM CG13443 INTERGENIC
3L	2682188	3L_2682188_SNP [dm3] 3L_2682188_SNP [dm6]	C	G	3.956e^-5	1	INTRON Fife
2R	18994974	2R_18994974_SNP [dm3] 2R_23107451_SNP [dm6]	C	T	3.982e^-5	1	INTERGENIC
2L	13490599	2L_13490599_SNP [dm3] 2L_13490599_SNP [dm6]	C	A	4.017e^-5	1	INTRON CG42784
2R	1015999	2R_1015999_SNP [dm3] 2R_5128494_SNP [dm6]	A	T	4.134e^-5	1	UPSTREAM gus INTRON CR43256 EXON CR43256	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn
2R	1021434	2R_1021434_SNP [dm3] 2R_5133929_SNP [dm6]	G	T	4.209e^-5	1	INTERGENIC
2L	5917901	2L_5917901_SNP [dm3] 2L_5917901_SNP [dm6]	G	A	4.224e^-5	1	SYNONYMOUS_CODING bchs
2R	1038823	2R_1038823_SNP [dm3] 2R_5151318_SNP [dm6]	G	T	4.225e^-5	1	INTRON Atf6
3R	5386571	3R_5386571_SNP [dm3] 3R_9560849_SNP [dm6]	C	G	4.290e^-5	1	DOWNSTREAM CG9393 INTRON MBD-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2R	9766761	2R_9766761_SNP [dm3] 2R_13879256_SNP [dm6]	G	A	4.380e^-5	1	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2948375	2L_2948375_SNP [dm3] 2L_2948375_SNP [dm6]	T	A	4.402e^-5	1	NON_SYNONYMOUS_CODING lilli
2L	14657158	2L_14657158_SNP [dm3] 2L_14657158_SNP [dm6]	C	T	4.470e^-5	1	INTRON osp
X	8953057	X_8953057_DEL [dm3] X_9059024_DEL [dm6]	GTGATGG	G	4.562e^-5	1	INTRON CG15365
2L	6724583	2L_6724583_SNP [dm3] 2L_6724583_SNP [dm6]	T	G	4.617e^-5	1	INTRON Liprin-alpha	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_zfh1
2L	4380234	2L_4380234_SNP [dm3] 2L_4380234_SNP [dm6]	G	A	4.807e^-5	1	UTR_3_PRIME Traf4 DOWNSTREAM CG17612	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10290590	3L_10290590_SNP [dm3] 3L_10297490_SNP [dm6]	T	C	4.849e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	26070924	3R_26070924_SNP [dm3] 3R_30245202_SNP [dm6]	G	A	4.864e^-5	1	INTRON CG9733
2R	2426886	2R_2426886_SNP [dm3] 2R_6539381_SNP [dm6]	A	T	4.881e^-5	1	INTRON jing
3L	10738806	3L_10738806_SNP [dm3] 3L_10745706_SNP [dm6]	T	A	5.094e^-5	1	INTERGENIC
X	3483521	X_3483521_SNP [dm3] X_3589488_SNP [dm6]	G	A	5.107e^-5	1	INTRON AstA-R1
X	14243242	X_14243242_SNP [dm3] X_14349209_SNP [dm6]	G	A	5.215e^-5	1	INTRON dpr8
3L	10290572	3L_10290572_SNP [dm3] 3L_10297472_SNP [dm6]	T	A	5.263e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	16660624	2R_16660624_SNP [dm3] 2R_20773119_SNP [dm6]	G	A	5.411e^-5	1	UPSTREAM CG13443 INTERGENIC
3L	12638877	3L_12638877_INS [dm3] 3L_12645777_INS [dm6]	AT	TGG	5.428e^-5	1	EXON CR32111
2R	1010092	2R_1010092_SNP [dm3] 2R_5122587_SNP [dm6]	A	T	5.468e^-5	1	UPSTREAM gus INTRON gus	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn
X	22242347	X_22242347_SNP [dm3] X_22840511_SNP [dm6]	T	A	5.605e^-5	1	INTRON fog & 1 other
3L	18577945	3L_18577945_SNP [dm3] 3L_18584845_SNP [dm6]	G	T	5.767e^-5	1	DOWNSTREAM CR45435 INTERGENIC
2R	16660627	2R_16660627_SNP [dm3] 2R_20773122_SNP [dm6]	A	G	5.775e^-5	1	UPSTREAM CG13443 INTERGENIC
2R	16660632	2R_16660632_SNP [dm3] 2R_20773127_SNP [dm6]	G	T	5.775e^-5	1	UPSTREAM CG13443 INTERGENIC
3L	2950366	3L_2950366_SNP [dm3] 3L_2950366_SNP [dm6]	G	A	5.810e^-5	1	NON_SYNONYMOUS_CODING CG32846 INTRON Shab
2R	1010438	2R_1010438_SNP [dm3] 2R_5122933_SNP [dm6]	T	A	5.833e^-5	1	UPSTREAM gus INTRON gus	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3L	10738810	3L_10738810_SNP [dm3] 3L_10745710_SNP [dm6]	A	T	5.880e^-5	1	INTERGENIC
2R	16665889	2R_16665889_SNP [dm3] 2R_20778384_SNP [dm6]	A	G	5.913e^-5	1	SYNONYMOUS_CODING CG43711 UPSTREAM CG43710
X	16565038	X_16565038_INS [dm3] X_16671005_INS [dm6]	C	CGATGC	6.062e^-5	1	INTRON CG13012	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10743523	3R_10743523_SNP [dm3] 3R_14917801_SNP [dm6]	A	G	6.156e^-5	1	UPSTREAM Sdr INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	6103112	3L_6103112_SNP [dm3] 3L_6110012_SNP [dm6]	A	G	6.176e^-5	1	INTRON Ets65A	TF binding site mE1_TFBS_cad
2L	10127212	2L_10127212_SNP [dm3] 2L_10127212_SNP [dm6]	C	G	6.328e^-5	1	INTRON CG44153
3L	11173572	3L_11173572_SNP [dm3] 3L_11180472_SNP [dm6]	C	A	6.359e^-5	1	INTRON GlcAT-P
2R	1042714	2R_1042714_SNP [dm3] 2R_5155209_SNP [dm6]	A	T	6.400e^-5	1	DOWNSTREAM Atf6 INTERGENIC
2R	1042715	2R_1042715_SNP [dm3] 2R_5155210_SNP [dm6]	C	T	6.400e^-5	1	DOWNSTREAM Atf6 INTERGENIC
2L	5262184	2L_5262184_SNP [dm3] 2L_5262184_SNP [dm6]	G	A	6.450e^-5	1	INTRON tkv	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11186024	3L_11186024_SNP [dm3] 3L_11192924_SNP [dm6]	T	C	6.470e^-5	1	INTRON GlcAT-P
2R	1029081	2R_1029081_SNP [dm3] 2R_5141576_SNP [dm6]	G	A	6.470e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16685732	2R_16685732_SNP [dm3] 2R_20798227_SNP [dm6]	C	A	6.497e^-5	1	INTERGENIC
2R	19692912	2R_19692912_SNP [dm3] 2R_23805389_SNP [dm6]	A	G	6.523e^-5	1	NON_SYNONYMOUS_CODING CG5539 DOWNSTREAM Ssrp INTRON CG13561	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2588834	2L_2588834_SNP [dm3] 2L_2588834_SNP [dm6]	C	G	6.597e^-5	1	INTERGENIC
2R	13998082	2R_13998082_SNP [dm3] 2R_18110577_SNP [dm6]	C	T	6.615e^-5	1	DOWNSTREAM CG34196 INTERGENIC
2R	14865989	2R_14865989_SNP [dm3] 2R_18978484_SNP [dm6]	T	C	6.686e^-5	1	SYNONYMOUS_CODING CG18605	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13998150	2R_13998150_DEL [dm3] 2R_18110645_DEL [dm6]	CTTAGTCTTGG...	A	6.778e^-5	1	DOWNSTREAM CG34196 INTERGENIC
2R	11178877	2R_11178877_SNP [dm3] 2R_15291372_SNP [dm6]	C	T	6.879e^-5	1	UPSTREAM Trpm INTRON Trpm
X	11440481	X_11440481_SNP [dm3] X_11546448_SNP [dm6]	T	A	6.939e^-5	1	UPSTREAM mir-2492 INTRON Drak
2R	1021452	2R_1021452_SNP [dm3] 2R_5133947_SNP [dm6]	T	A	6.986e^-5	1	INTERGENIC
3L	11186236	3L_11186236_SNP [dm3] 3L_11193136_SNP [dm6]	G	T	7.104e^-5	1	INTRON GlcAT-P
2R	1007650	2R_1007650_SNP [dm3] 2R_5120145_SNP [dm6]	G	A	7.132e^-5	1	INTRON gus
3L	12638504	3L_12638504_SNP [dm3] 3L_12645404_SNP [dm6]	G	T	7.366e^-5	1	EXON CR32111
3R	26943544	3R_26943544_SNP [dm3] 3R_31117822_SNP [dm6]	G	A	7.470e^-5	1	INTERGENIC
3L	11186096	3L_11186096_SNP [dm3] 3L_11192996_SNP [dm6]	G	T	7.519e^-5	1	INTRON GlcAT-P
X	18040083	X_18040083_SNP [dm3] X_18146050_SNP [dm6]	A	G	7.575e^-5	1	INTERGENIC
2R	13998163	2R_13998163_SNP [dm3] 2R_18110658_SNP [dm6]	G	T	7.580e^-5	1	DOWNSTREAM CG34196 INTERGENIC
2L	16874637	2L_16874637_SNP [dm3] 2L_16874637_SNP [dm6]	A	G	7.606e^-5	1	INTRON CR31781
3R	16421912	3R_16421912_DEL [dm3] 3R_20596190_DEL [dm6]	TAGT	T	7.790e^-5	1	INTRON bon	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad

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By genomic position
Variant impact
Gene name

se_StarvationRes phenotype

Phenotype distribution and association to known covariates

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GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results