DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.345e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1687 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	5103716	2L_5103716_SNP [dm3] 2L_5103716_SNP [dm6]	A	C	2.011e^-7	0.377	INTRON Msp300
2R	4966701	2R_4966701_SNP [dm3] 2R_9079196_SNP [dm6]	C	T	9.179e^-7	0.58	INTRON CG8083
2R	4966982	2R_4966982_SNP [dm3] 2R_9079477_SNP [dm6]	T	A	9.273e^-7	0.58	INTRON CG8083
2R	4966667	2R_4966667_SNP [dm3] 2R_9079162_SNP [dm6]	C	A	2.267e^-6	0.675	INTRON CG8083
3R	20022991	3R_20022991_SNP [dm3] 3R_24197269_SNP [dm6]	T	G	3.273e^-6	0.675	UTR_3_PRIME twin DOWNSTREAM twin & 1 other
3R	16304247	3R_16304247_SNP [dm3] 3R_20478525_SNP [dm6]	A	G	4.139e^-6	0.675	INTRON Gfrl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13668018	3L_13668018_SNP [dm3] 3L_13674918_SNP [dm6]	T	A	4.423e^-6	0.675	INTRON bru-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11970942	X_11970942_SNP [dm3] X_12076909_SNP [dm6]	C	T	4.793e^-6	0.675	INTRON CR43960 & 1 other
X	11970928	X_11970928_SNP [dm3] X_12076895_SNP [dm6]	G	C	5.803e^-6	0.675	INTRON CR43960 & 1 other
2L	8573793	2L_8573793_SNP [dm3] 2L_8573793_SNP [dm6]	G	C	6.458e^-6	0.675	INTRON Sema-1a
3R	19205965	3R_19205965_SNP [dm3] 3R_23380243_SNP [dm6]	T	A	6.626e^-6	0.675	INTRON CG4393	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4979138	2R_4979138_SNP [dm3] 2R_9091633_SNP [dm6]	T	C	6.694e^-6	0.675	NON_SYNONYMOUS_CODING CG8080 DOWNSTREAM CG13741
2L	20726434	2L_20726434_SNP [dm3] 2L_20726434_SNP [dm6]	G	A	6.768e^-6	0.675	NON_SYNONYMOUS_CODING CG9316 DOWNSTREAM CG9317
2L	20726435	2L_20726435_SNP [dm3] 2L_20726435_SNP [dm6]	A	G	7.438e^-6	0.675	NON_SYNONYMOUS_CODING CG9316 DOWNSTREAM CG9317
2R	4965186	2R_4965186_SNP [dm3] 2R_9077681_SNP [dm6]	C	T	7.844e^-6	0.675	DOWNSTREAM ana INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1908274	2L_1908274_SNP [dm3] 2L_1908274_SNP [dm6]	A	C	8.231e^-6	0.675	INTRON CG7337
2R	4980022	2R_4980022_SNP [dm3] 2R_9092517_SNP [dm6]	T	A	8.484e^-6	0.675	UTR_5_PRIME CG8080 UTR_3_PRIME CG13741 UPSTREAM CG8080	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	11970932	X_11970932_SNP [dm3] X_12076899_SNP [dm6]	C	T	9.124e^-6	0.675	INTRON CR43960 & 1 other
2R	17759009	2R_17759009_SNP [dm3] 2R_21871504_SNP [dm6]	G	T	9.150e^-6	0.675	UPSTREAM Fili INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	4965035	2R_4965035_SNP [dm3] 2R_9077530_SNP [dm6]	A	T	9.185e^-6	0.675	UTR_3_PRIME ana	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4966408	2R_4966408_SNP [dm3] 2R_9078903_SNP [dm6]	A	T	9.265e^-6	0.675	START_GAINED CG8083 UTR_5_PRIME CG8083
3R	14130642	3R_14130642_SNP [dm3] 3R_18304920_SNP [dm6]	C	A	9.277e^-6	0.675	SPLICE_SITE_REGION PKD INTRON PKD	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13668131	3L_13668131_SNP [dm3] 3L_13675031_SNP [dm6]	T	A	9.627e^-6	0.675	INTRON bru-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13100332	X_13100332_SNP [dm3] X_13206299_SNP [dm6]	T	G	9.852e^-6	0.675	INTRON sno
3L	12962455	3L_12962455_SNP [dm3] 3L_12969355_SNP [dm6]	G	A	9.890e^-6	0.675	INTERGENIC
3L	2191418	3L_2191418_SNP [dm3] 3L_2191418_SNP [dm6]	T	A	1.021e^-5	0.675	INTRON CG5707
X	11970951	X_11970951_SNP [dm3] X_12076918_SNP [dm6]	C	T	1.026e^-5	0.675	INTRON CR43960 & 1 other
2L	19637182	2L_19637182_SNP [dm3] 2L_19637182_SNP [dm6]	G	A	1.033e^-5	0.675	INTRON Lar
2R	4986493	2R_4986493_SNP [dm3] 2R_9098988_SNP [dm6]	C	T	1.044e^-5	0.675	UPSTREAM CG8078 INTRON CG8777	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11970948	X_11970948_SNP [dm3] X_12076915_SNP [dm6]	A	C	1.111e^-5	0.675	INTRON CR43960 & 1 other
3R	11394603	3R_11394603_SNP [dm3] 3R_15568881_SNP [dm6]	A	T	1.119e^-5	0.675	INTERGENIC
3L	12555589	3L_12555589_SNP [dm3] 3L_12562489_SNP [dm6]	T	C	1.178e^-5	0.675	INTRON sowah
X	12020591	X_12020591_SNP [dm3] X_12126558_SNP [dm6]	C	T	1.187e^-5	0.675	INTRON Ten-a
X	11970962	X_11970962_SNP [dm3] X_12076929_SNP [dm6]	A	T	1.261e^-5	0.696	INTRON CR43960 & 1 other
2L	20726548	2L_20726548_SNP [dm3] 2L_20726548_SNP [dm6]	C	A	1.399e^-5	0.734	UTR_5_PRIME CG9316 DOWNSTREAM CG9317
2L	4139274	2L_4139274_DEL [dm3] 2L_4139274_DEL [dm6]	TT	T	1.409e^-5	0.734	INTERGENIC
2R	17759046	2R_17759046_INS [dm3] 2R_21871541_INS [dm6]	A	ACGTTTTTATGCGATGTATA...	1.471e^-5	0.746	UPSTREAM Fili INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	10973238	2L_10973238_SNP [dm3] 2L_10973238_SNP [dm6]	C	T	1.684e^-5	0.809	UTR_3_PRIME CG16743 DOWNSTREAM abo
3L	10032551	3L_10032551_SNP [dm3] 3L_10039451_SNP [dm6]	T	C	1.699e^-5	0.809	INTRON dpr6
2R	4971530	2R_4971530_SNP [dm3] 2R_9084025_SNP [dm6]	T	C	1.724e^-5	0.809	SPLICE_SITE_REGION CNT1 DOWNSTREAM CG13742 INTRON CNT1
3L	17239384	3L_17239384_SNP [dm3] 3L_17246284_SNP [dm6]	A	G	1.896e^-5	0.83	INTRON CR43870	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4998103	2R_4998103_SNP [dm3] 2R_9110598_SNP [dm6]	C	T	1.907e^-5	0.83	UPSTREAM Pmm45A & 1 other DOWNSTREAM Mys45A INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
X	11970958	X_11970958_SNP [dm3] X_12076925_SNP [dm6]	G	A	1.909e^-5	0.83	INTRON CR43960 & 1 other
2L	8573939	2L_8573939_SNP [dm3] 2L_8573939_SNP [dm6]	T	A	2.061e^-5	0.83	INTRON Sema-1a
3L	10032712	3L_10032712_SNP [dm3] 3L_10039612_SNP [dm6]	A	C	2.080e^-5	0.83	INTRON dpr6	TF binding site BDTNP1_TFBS_dl
2L	3685668	2L_3685668_SNP [dm3] 2L_3685668_SNP [dm6]	G	A	2.132e^-5	0.83	INTRON CG34340
2R	4995062	2R_4995062_SNP [dm3] 2R_9107557_SNP [dm6]	G	A	2.221e^-5	0.83	SYNONYMOUS_CODING Pmm45A DOWNSTREAM Vang	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5398896	2L_5398896_DEL [dm3] 2L_5398896_DEL [dm6]	TCGATTTCTGGATTGCT...	T	2.222e^-5	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12394399	3L_12394399_SNP [dm3] 3L_12401299_SNP [dm6]	C	T	2.273e^-5	0.83	SYNONYMOUS_CODING Smyd4 DOWNSTREAM CG32103	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13763690	2L_13763690_SNP [dm3] 2L_13763690_SNP [dm6]	C	T	2.279e^-5	0.83	INTRON TM9SF4
3R	2791123	3R_2791123_SNP [dm3] 3R_6965401_SNP [dm6]	T	G	2.321e^-5	0.83	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	3147824	X_3147824_SNP [dm3] X_3253791_SNP [dm6]	A	C	2.354e^-5	0.83	INTRON dnc
3R	21034718	3R_21034718_SNP [dm3] 3R_25208996_SNP [dm6]	T	A	2.412e^-5	0.83	UPSTREAM CG13654 & 1 other INTRON CG13654	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	4140922	2L_4140922_SNP [dm3] 2L_4140922_SNP [dm6]	C	A	2.414e^-5	0.83	INTERGENIC
2R	4965618	2R_4965618_SNP [dm3] 2R_9078113_SNP [dm6]	A	T	2.434e^-5	0.83	UPSTREAM CG8083 DOWNSTREAM ana INTERGENIC
X	12001653	X_12001653_SNP [dm3] X_12107620_SNP [dm6]	G	C	2.502e^-5	0.838	NON_SYNONYMOUS_CODING CG2750 INTRON CR43960 & 1 other
2R	12100825	2R_12100825_DEL [dm3] 2R_16213320_DEL [dm6]	CAGC	C	2.607e^-5	0.846	INTRON mrj	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	10649577	3L_10649577_SNP [dm3] 3L_10656477_SNP [dm6]	T	C	2.621e^-5	0.846	INTRON CG32066	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5103745	2L_5103745_SNP [dm3] 2L_5103745_SNP [dm6]	T	C	2.660e^-5	0.846	INTRON Msp300
2L	2914066	2L_2914066_SNP [dm3] 2L_2914066_SNP [dm6]	G	A	2.721e^-5	0.848	INTRON lilli
3L	17453493	3L_17453493_SNP [dm3] 3L_17460393_SNP [dm6]	T	A	2.840e^-5	0.848	INTRON CR44565
3L	17453706	3L_17453706_SNP [dm3] 3L_17460606_SNP [dm6]	A	T	2.840e^-5	0.848	DOWNSTREAM CR44565 INTERGENIC
3R	14025729	3R_14025729_SNP [dm3] 3R_18200007_SNP [dm6]	G	C	2.877e^-5	0.848	UPSTREAM CG7985 & 1 other INTRON CG7985	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2R	17685847	2R_17685847_SNP [dm3] 2R_21798342_SNP [dm6]	A	G	2.895e^-5	0.848	SYNONYMOUS_CODING CG18735 DOWNSTREAM CG4386	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16293950	2L_16293950_SNP [dm3] 2L_16293950_SNP [dm6]	T	A	2.939e^-5	0.848	UPSTREAM CG13258 & 2 others INTERGENIC
3R	21034653	3R_21034653_SNP [dm3] 3R_25208931_SNP [dm6]	C	G	3.067e^-5	0.87	UPSTREAM CG13654 & 1 other INTRON CG13654	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	17453151	3L_17453151_SNP [dm3] 3L_17460051_SNP [dm6]	T	C	3.133e^-5	0.87	UPSTREAM CR44565 INTERGENIC
2R	6442232	2R_6442232_SNP [dm3] 2R_10554727_SNP [dm6]	T	C	3.158e^-5	0.87	INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
X	17511939	X_17511939_SNP [dm3] X_17617906_SNP [dm6]	A	C	3.266e^-5	0.87	INTERGENIC
2L	1908235	2L_1908235_SNP [dm3] 2L_1908235_SNP [dm6]	T	C	3.289e^-5	0.87	INTRON CG7337
2R	6796850	2R_6796850_SNP [dm3] 2R_10909345_SNP [dm6]	C	G	3.294e^-5	0.87	UPSTREAM Obp47a INTERGENIC
X	5258976	X_5258976_SNP [dm3] X_5364943_SNP [dm6]	T	A	3.348e^-5	0.872	UPSTREAM SK INTRON SK	TF binding site BDTNP1_TFBS_dl
3R	21034681	3R_21034681_SNP [dm3] 3R_25208959_SNP [dm6]	C	T	3.418e^-5	0.878	UPSTREAM CG13654 & 1 other INTRON CG13654	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	1908190	2L_1908190_SNP [dm3] 2L_1908190_SNP [dm6]	T	A	3.509e^-5	0.889	INTRON CG7337
X	10285676	X_10285676_SNP [dm3] X_10391643_SNP [dm6]	A	G	3.572e^-5	0.893	INTRON flw
3R	20022978	3R_20022978_SNP [dm3] 3R_24197256_SNP [dm6]	C	T	3.718e^-5	0.901	UTR_3_PRIME twin DOWNSTREAM twin & 1 other
3L	10033852	3L_10033852_INS [dm3] 3L_10040752_INS [dm6]	G	GT	3.737e^-5	0.901	INTRON dpr6
2R	5008245	2R_5008245_SNP [dm3] 2R_9120740_SNP [dm6]	C	T	3.784e^-5	0.901	UTR_3_PRIME Su_var_2-10 DOWNSTREAM Su_var_2-10 INTRON Su_var_2-10
2L	1908158	2L_1908158_SNP [dm3] 2L_1908158_SNP [dm6]	A	T	3.797e^-5	0.901	INTRON CG7337
3R	3285710	3R_3285710_SNP [dm3] 3R_7459988_SNP [dm6]	G	A	3.841e^-5	0.901	INTERGENIC
3L	18669661	3L_18669661_SNP [dm3] 3L_18676561_SNP [dm6]	G	C	3.895e^-5	0.902	SYNONYMOUS_CODING GNBP1
2R	15069206	2R_15069206_SNP [dm3] 2R_19181701_SNP [dm6]	T	G	4.087e^-5	0.935	INTRON hppy
2L	10349468	2L_10349468_SNP [dm3] 2L_10349468_SNP [dm6]	A	T	4.146e^-5	0.937	INTRON CG34367
3R	3285717	3R_3285717_SNP [dm3] 3R_7459995_SNP [dm6]	C	A	4.287e^-5	0.954	INTERGENIC
X	17511938	X_17511938_SNP [dm3] X_17617905_SNP [dm6]	C	A	4.342e^-5	0.954	INTERGENIC
3L	11546358	3L_11546358_SNP [dm3] 3L_11553258_SNP [dm6]	A	G	4.379e^-5	0.954	UPSTREAM mir-4968 & 1 other INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	18951474	3L_18951474_SNP [dm3] 3L_18958374_SNP [dm6]	T	G	4.463e^-5	0.954	INTERGENIC
2L	16921624	2L_16921624_SNP [dm3] 2L_16921624_SNP [dm6]	G	A	4.507e^-5	0.954	INTERGENIC
2R	4997694	2R_4997694_SNP [dm3] 2R_9110189_SNP [dm6]	C	G	4.528e^-5	0.954	UPSTREAM Pmm45A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
3L	15880269	3L_15880269_SNP [dm3] 3L_15887169_SNP [dm6]	T	A	4.769e^-5	0.983	INTRON pHCl
3R	3121037	3R_3121037_SNP [dm3] 3R_7295315_SNP [dm6]	C	T	4.806e^-5	0.983	INTRON rn
2R	10333070	2R_10333070_SNP [dm3] 2R_14445565_SNP [dm6]	T	C	4.836e^-5	0.983	INTRON Oaz
2R	5014151	2R_5014151_SNP [dm3] 2R_9126646_SNP [dm6]	G	A	4.900e^-5	0.983	INTRON CG18659	TF binding site mE1_TFBS_sens
X	3169710	X_3169710_SNP [dm3] X_3275677_SNP [dm6]	T	G	4.965e^-5	0.983	INTRON dnc
2L	3583614	2L_3583614_SNP [dm3] 2L_3583614_SNP [dm6]	G	A	5.075e^-5	0.983	INTERGENIC
2L	1626980	2L_1626980_SNP [dm3] 2L_1626980_SNP [dm6]	G	T	5.209e^-5	0.983	UPSTREAM CR44603 INTERGENIC
2R	12370624	2R_12370624_SNP [dm3] 2R_16483119_SNP [dm6]	G	A	5.217e^-5	0.983	INTERGENIC
X	3978280	X_3978280_SNP [dm3] X_4084247_SNP [dm6]	T	C	5.230e^-5	0.983	SYNONYMOUS_CODING CG43689	TF binding site mE1_TFBS_chinmo
2L	13334865	2L_13334865_SNP [dm3] 2L_13334865_SNP [dm6]	A	G	5.241e^-5	0.983	INTERGENIC
2R	10148146	2R_10148146_DEL [dm3] 2R_14260641_DEL [dm6]	GAC	G	5.280e^-5	0.983	UTR_3_PRIME beta4GalNAcTA DOWNSTREAM CG8547
3R	13390692	3R_13390692_SNP [dm3] 3R_17564970_SNP [dm6]	C	A	5.292e^-5	0.983	INTRON Hmx
3L	5314228	3L_5314228_SNP [dm3] 3L_5321128_SNP [dm6]	T	C	5.658e^-5	1	INTERGENIC
3L	12394396	3L_12394396_SNP [dm3] 3L_12401296_SNP [dm6]	G	T	5.901e^-5	1	SYNONYMOUS_CODING Smyd4 DOWNSTREAM CG32103	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8252419	2R_8252419_SNP [dm3] 2R_12364914_SNP [dm6]	G	A	6.023e^-5	1	EXON CR33013
3R	6389944	3R_6389944_SNP [dm3] 3R_10564222_SNP [dm6]	G	C	6.045e^-5	1	INTRON hth
3L	10033072	3L_10033072_SNP [dm3] 3L_10039972_SNP [dm6]	C	G	6.183e^-5	1	INTRON dpr6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20386553	3R_20386553_SNP [dm3] 3R_24560831_SNP [dm6]	T	C	6.240e^-5	1	INTRON CG13624	TF binding site mE1_TFBS_cad
2R	4998792	2R_4998792_SNP [dm3] 2R_9111287_SNP [dm6]	C	T	6.244e^-5	1	SYNONYMOUS_CODING tsu DOWNSTREAM Mys45A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	14130604	3R_14130604_SNP [dm3] 3R_18304882_SNP [dm6]	C	G	6.250e^-5	1	INTRON PKD	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1908241	2L_1908241_SNP [dm3] 2L_1908241_SNP [dm6]	G	C	6.375e^-5	1	INTRON CG7337
X	10285725	X_10285725_SNP [dm3] X_10391692_SNP [dm6]	A	C	6.402e^-5	1	INTRON flw
2L	5883985	2L_5883985_SNP [dm3] 2L_5883985_SNP [dm6]	T	A	6.416e^-5	1	UPSTREAM CG43185 DOWNSTREAM Sfp26Ac INTRON CG44574
2L	2618187	2L_2618187_DEL [dm3] 2L_2618187_DEL [dm6]	TACCAGGAAGGATGTGGATT...	T	6.455e^-5	1	INTERGENIC
3R	14025731	3R_14025731_SNP [dm3] 3R_18200009_SNP [dm6]	C	T	6.455e^-5	1	UPSTREAM CG7985 & 1 other INTRON CG7985	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	10032200	3L_10032200_SNP [dm3] 3L_10039100_SNP [dm6]	A	G	6.571e^-5	1	INTRON dpr6
3L	12125625	3L_12125625_SNP [dm3] 3L_12132525_SNP [dm6]	C	A	6.603e^-5	1	SYNONYMOUS_CODING CG11534 DOWNSTREAM Lsp2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	12540603	2R_12540603_SNP [dm3] 2R_16653098_SNP [dm6]	C	T	6.628e^-5	1	UPSTREAM Amyrel DOWNSTREAM Nach INTERGENIC
2L	1908245	2L_1908245_SNP [dm3] 2L_1908245_SNP [dm6]	T	A	6.738e^-5	1	INTRON CG7337
2L	5883977	2L_5883977_SNP [dm3] 2L_5883977_SNP [dm6]	A	T	6.892e^-5	1	UPSTREAM CG43185 DOWNSTREAM Sfp26Ac INTRON CG44574
3L	10968136	3L_10968136_DEL [dm3] 3L_10975036_DEL [dm6]	TCTCAT	CG	6.955e^-5	1	INTERGENIC	TF binding site mE1_TFBS_cad
3L	9504818	3L_9504818_SNP [dm3] 3L_9511718_SNP [dm6]	T	G	7.120e^-5	1	UPSTREAM snoRNA:Me28S-G3253 & 1 other DOWNSTREAM CG33703 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3L	18951776	3L_18951776_SNP [dm3] 3L_18958676_SNP [dm6]	C	T	7.197e^-5	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	13380370	3R_13380370_SNP [dm3] 3R_17554648_SNP [dm6]	A	T	7.256e^-5	1	INTERGENIC
2L	1908240	2L_1908240_SNP [dm3] 2L_1908240_SNP [dm6]	T	G	7.523e^-5	1	INTRON CG7337
X	10283765	X_10283765_SNP [dm3] X_10389732_SNP [dm6]	A	G	7.551e^-5	1	INTRON flw
2L	15328798	2L_15328798_SNP [dm3] 2L_15328798_SNP [dm6]	A	T	7.591e^-5	1	INTERGENIC
2L	15432149	2L_15432149_SNP [dm3] 2L_15432149_SNP [dm6]	C	T	7.688e^-5	1	INTERGENIC
2R	4963547	2R_4963547_SNP [dm3] 2R_9076042_SNP [dm6]	C	G	7.737e^-5	1	INTRON ana	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3R	16371445	3R_16371445_SNP [dm3] 3R_20545723_SNP [dm6]	G	A	7.743e^-5	1	INTRON Stat92E
2R	14078508	2R_14078508_SNP [dm3] 2R_18191003_SNP [dm6]	A	T	7.903e^-5	1	INTRON CG33958
3L	10968106	3L_10968106_SNP [dm3] 3L_10975006_SNP [dm6]	T	C	7.908e^-5	1	INTERGENIC	TF binding site mE1_TFBS_cad
3R	21034818	3R_21034818_SNP [dm3] 3R_25209096_SNP [dm6]	C	T	8.015e^-5	1	UPSTREAM CG13654 & 1 other INTRON CG13654	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	14062950	3R_14062950_SNP [dm3] 3R_18237228_SNP [dm6]	A	G	8.043e^-5	1	SYNONYMOUS_CODING repo	TF binding site mE1_TFBS_chinmo
3R	24465716	3R_24465716_SNP [dm3] 3R_28639994_SNP [dm6]	G	A	8.051e^-5	1	INTERGENIC
X	4147271	X_4147271_SNP [dm3] X_4253238_SNP [dm6]	A	G	8.057e^-5	1	UPSTREAM CG15576 INTERGENIC
3L	10968002	3L_10968002_SNP [dm3] 3L_10974902_SNP [dm6]	A	C	8.078e^-5	1	INTERGENIC
2R	4965565	2R_4965565_SNP [dm3] 2R_9078060_SNP [dm6]	C	T	8.093e^-5	1	UPSTREAM CG8083 DOWNSTREAM ana INTERGENIC
3L	17239389	3L_17239389_SNP [dm3] 3L_17246289_SNP [dm6]	A	G	8.135e^-5	1	INTRON CR43870	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21035909	3R_21035909_SNP [dm3] 3R_25210187_SNP [dm6]	A	T	8.217e^-5	1	INTRON CG13654	TF binding site mE1_TFBS_HSA
2L	14494537	2L_14494537_SNP [dm3] 2L_14494537_SNP [dm6]	G	A	8.318e^-5	1	DOWNSTREAM noc INTERGENIC	TF binding site mE1_TFBS_zfh1
2L	16293942	2L_16293942_SNP [dm3] 2L_16293942_SNP [dm6]	G	A	8.341e^-5	1	UPSTREAM CG13258 & 2 others INTERGENIC
2R	5002459	2R_5002459_SNP [dm3] 2R_9114954_SNP [dm6]	C	T	8.372e^-5	1	SYNONYMOUS_CODING Phax	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	17239366	3L_17239366_SNP [dm3] 3L_17246266_SNP [dm6]	G	C	8.378e^-5	1	INTRON CR43870	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10047294	3L_10047294_SNP [dm3] 3L_10054194_SNP [dm6]	C	T	8.389e^-5	1	INTRON dpr6
2L	1057043	2L_1057043_SNP [dm3] 2L_1057043_SNP [dm6]	C	G	8.439e^-5	1	INTRON S
3R	2595479	3R_2595479_SNP [dm3] 3R_6769757_SNP [dm6]	A	G	8.707e^-5	1	INTRON CR42721
2R	12100860	2R_12100860_SNP [dm3] 2R_16213355_SNP [dm6]	C	T	8.795e^-5	1	INTRON mrj	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	11545272	3L_11545272_SNP [dm3] 3L_11552172_SNP [dm6]	C	T	8.803e^-5	1	DOWNSTREAM mir-4968 INTRON Mob2	TF binding site BDTNP1_TFBS_dl
2L	16293955	2L_16293955_SNP [dm3] 2L_16293955_SNP [dm6]	T	G	8.916e^-5	1	UPSTREAM CG13258 & 2 others INTERGENIC
2R	17685841	2R_17685841_SNP [dm3] 2R_21798336_SNP [dm6]	G	T	8.922e^-5	1	SYNONYMOUS_CODING CG18735 DOWNSTREAM CG4386	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14412396	3L_14412396_SNP [dm3] 3L_14419296_SNP [dm6]	G	T	8.951e^-5	1	INTRON bbg
2R	4961527	2R_4961527_SNP [dm3] 2R_9074022_SNP [dm6]	T	C	8.993e^-5	1	INTRON ana
2L	10972807	2L_10972807_SNP [dm3] 2L_10972807_SNP [dm6]	A	T	9.072e^-5	1	SYNONYMOUS_CODING CG16743 DOWNSTREAM YL-1 & 1 other
X	10283793	X_10283793_SNP [dm3] X_10389760_SNP [dm6]	G	A	9.080e^-5	1	INTRON flw
3L	12555588	3L_12555588_SNP [dm3] 3L_12562488_SNP [dm6]	C	T	9.097e^-5	1	INTRON sowah
2R	17685844	2R_17685844_SNP [dm3] 2R_21798339_SNP [dm6]	G	A	9.109e^-5	1	SYNONYMOUS_CODING CG18735 DOWNSTREAM CG4386	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7688608	3R_7688608_SNP [dm3] 3R_11862886_SNP [dm6]	C	T	9.133e^-5	1	INTRON CG6959
3R	19116835	3R_19116835_SNP [dm3] 3R_23291113_SNP [dm6]	G	T	9.139e^-5	1	UTR_3_PRIME pnt UPSTREAM CG4434
2L	16293938	2L_16293938_MNP [dm3] 2L_16293938_MNP [dm6]	GAA	AGC	9.246e^-5	1	UPSTREAM CG13258 & 2 others INTERGENIC
2L	16294123	2L_16294123_SNP [dm3] 2L_16294123_SNP [dm6]	A	G	9.328e^-5	1	UPSTREAM Cyp303a1 & 1 other INTERGENIC
2R	8443989	2R_8443989_SNP [dm3] 2R_12556484_SNP [dm6]	C	T	9.391e^-5	1	INTRON fra
2R	12540488	2R_12540488_SNP [dm3] 2R_16652983_SNP [dm6]	A	C	9.439e^-5	1	UPSTREAM Amyrel DOWNSTREAM Nach INTERGENIC
2L	14259715	2L_14259715_SNP [dm3] 2L_14259715_SNP [dm6]	A	G	9.465e^-5	1	INTERGENIC
2L	9594034	2L_9594034_SNP [dm3] 2L_9594034_SNP [dm6]	C	T	9.470e^-5	1	INTERGENIC	regulatory region REDfly_CRMs
2R	9751397	2R_9751397_SNP [dm3] 2R_13863892_SNP [dm6]	G	T	9.496e^-5	1	UTR_3_PRIME CG13344 DOWNSTREAM shot & 1 other
3L	12579654	3L_12579654_SNP [dm3] 3L_12586554_SNP [dm6]	A	T	9.547e^-5	1	INTRON ara
2R	5006782	2R_5006782_SNP [dm3] 2R_9119277_SNP [dm6]	T	C	9.598e^-5	1	UTR_3_PRIME Su_var_2-10 INTRON Su_var_2-10	TF binding site mE1_TFBS_cad
3R	12728912	3R_12728912_DEL [dm3] 3R_16903190_DEL [dm6]	TT	T	9.609e^-5	1	INTRON iab-8
3L	13670904	3L_13670904_SNP [dm3] 3L_13677804_SNP [dm6]	G	A	9.619e^-5	1	INTRON bru-3
2R	7200135	2R_7200135_SNP [dm3] 2R_11312630_SNP [dm6]	C	T	9.668e^-5	1	INTRON nompA	TF binding site mE1_TFBS_cad
2R	4993740	2R_4993740_SNP [dm3] 2R_9106235_SNP [dm6]	C	T	9.759e^-5	1	UTR_3_PRIME Vang DOWNSTREAM Pmm45A
3L	12958060	3L_12958060_SNP [dm3] 3L_12964960_SNP [dm6]	T	C	9.785e^-5	1	SYNONYMOUS_CODING Or69a INTRON Or69a
2R	8251676	2R_8251676_SNP [dm3] 2R_12364171_SNP [dm6]	G	C	9.871e^-5	1	INTRON CR33013	TF binding site mE1_TFBS_cad
X	12001644	X_12001644_SNP [dm3] X_12107611_SNP [dm6]	G	T	9.883e^-5	1	NON_SYNONYMOUS_CODING CG2750 INTRON CR43960 & 1 other
3L	19420793	3L_19420793_SNP [dm3] 3L_19427693_SNP [dm6]	G	A	9.937e^-5	1	INTERGENIC
3L	9701761	3L_9701761_SNP [dm3] 3L_9708661_SNP [dm6]	T	C	9.938e^-5	1	SYNONYMOUS_CODING CG16711 UTR_3_PRIME CG16711	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4531637	X_4531637_SNP [dm3] X_4637604_SNP [dm6]	C	T	1.005e^-4	1	NON_SYNONYMOUS_CODING pon	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10694739	2R_10694739_SNP [dm3] 2R_14807234_SNP [dm6]	G	C	1.010e^-4	1	UPSTREAM kn INTERGENIC	regulatory region REDfly_CRMs
3L	9085040	3L_9085040_SNP [dm3] 3L_9091940_SNP [dm6]	A	G	1.014e^-4	1	SYNONYMOUS_CODING Tequila
X	19284364	X_19284364_DEL [dm3] X_19390331_DEL [dm6]	TT	T	1.019e^-4	1	INTRON kek5
3L	9508986	3L_9508986_SNP [dm3] 3L_9515886_SNP [dm6]	G	T	1.022e^-4	1	INTRON CG33700
2L	14494377	2L_14494377_SNP [dm3] 2L_14494377_SNP [dm6]	A	G	1.031e^-4	1	DOWNSTREAM noc INTERGENIC
2L	1908187	2L_1908187_SNP [dm3] 2L_1908187_SNP [dm6]	G	A	1.032e^-4	1	INTRON CG7337
3R	6326901	3R_6326901_SNP [dm3] 3R_10501179_SNP [dm6]	C	T	1.039e^-4	1	INTERGENIC
3R	9640481	3R_9640481_DEL [dm3] 3R_13814759_DEL [dm6]	AGA	A	1.040e^-4	1	UPSTREAM CR43641 DOWNSTREAM tal-AA & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	17820879	X_17820879_SNP [dm3] X_17926846_SNP [dm6]	G	A	1.052e^-4	1	UTR_3_PRIME Sh
3L	18269942	3L_18269942_SNP [dm3] 3L_18276842_SNP [dm6]	T	A	1.060e^-4	1	INTERGENIC
3L	10604723	3L_10604723_SNP [dm3] 3L_10611623_SNP [dm6]	C	A	1.067e^-4	1	INTERGENIC
2R	10860522	2R_10860522_SNP [dm3] 2R_14973017_SNP [dm6]	T	A	1.072e^-4	1	INTRON ckn	TF binding site BDTNP1_TFBS_twi
3L	14524791	3L_14524791_SNP [dm3] 3L_14531691_SNP [dm6]	A	T	1.075e^-4	1	INTRON bbg
2R	17918544	2R_17918544_SNP [dm3] 2R_22031039_SNP [dm6]	A	G	1.075e^-4	1	INTRON CG34370
3R	20424688	3R_20424688_SNP [dm3] 3R_24598966_SNP [dm6]	G	A	1.077e^-4	1	INTRON mld
2L	1908242	2L_1908242_INS [dm3] 2L_1908242_INS [dm6]	A	AG	1.078e^-4	1	INTRON CG7337
X	11970897	X_11970897_SNP [dm3] X_12076864_SNP [dm6]	T	C	1.089e^-4	1	INTRON CR43960 & 1 other
3L	18950398	3L_18950398_SNP [dm3] 3L_18957298_SNP [dm6]	C	A	1.105e^-4	1	INTERGENIC
2L	16370752	2L_16370752_SNP [dm3] 2L_16370752_SNP [dm6]	T	A	1.105e^-4	1	INTERGENIC
2R	12540482	2R_12540482_DEL [dm3] 2R_16652977_DEL [dm6]	ATTTA	A	1.108e^-4	1	UPSTREAM Amyrel DOWNSTREAM Nach INTERGENIC
3R	24079068	3R_24079068_SNP [dm3] 3R_28253346_SNP [dm6]	G	A	1.109e^-4	1	INTERGENIC
2L	13875231	2L_13875231_SNP [dm3] 2L_13875231_SNP [dm6]	T	G	1.121e^-4	1	INTRON CenG1A
2R	8443991	2R_8443991_SNP [dm3] 2R_12556486_SNP [dm6]	T	C	1.135e^-4	1	INTRON fra
2R	12540514	2R_12540514_SNP [dm3] 2R_16653009_SNP [dm6]	A	G	1.144e^-4	1	UPSTREAM Amyrel DOWNSTREAM Nach INTERGENIC
3R	18865255	3R_18865255_SNP [dm3] 3R_23039533_SNP [dm6]	C	T	1.144e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5261632	X_5261632_SNP [dm3] X_5367599_SNP [dm6]	T	A	1.149e^-4	1	INTRON SK
3L	17453090	3L_17453090_SNP [dm3] 3L_17459990_SNP [dm6]	T	C	1.184e^-4	1	UPSTREAM CR44565 INTERGENIC
3L	18950977	3L_18950977_SNP [dm3] 3L_18957877_SNP [dm6]	T	G	1.193e^-4	1	INTERGENIC
3L	18951010	3L_18951010_SNP [dm3] 3L_18957910_SNP [dm6]	G	A	1.193e^-4	1	INTERGENIC
2R	8352020	2R_8352020_SNP [dm3] 2R_12464515_SNP [dm6]	T	C	1.194e^-4	1	SYNONYMOUS_CODING Lac	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	3978439	X_3978439_SNP [dm3] X_4084406_SNP [dm6]	G	A	1.208e^-4	1	INTRON CG43689	TF binding site mE1_TFBS_chinmo
3L	18898485	3L_18898485_SNP [dm3] 3L_18905385_SNP [dm6]	T	C	1.220e^-4	1	UTR_5_PRIME CG6841 UPSTREAM CSN1b
3R	26954136	3R_26954136_SNP [dm3] 3R_31128414_SNP [dm6]	G	A	1.232e^-4	1	SYNONYMOUS_CODING CG15556
3R	2805458	3R_2805458_SNP [dm3] 3R_6979736_SNP [dm6]	C	T	1.251e^-4	1	INTRON Antp	TF binding site BDTNP1_TFBS_dl
2R	18388152	2R_18388152_SNP [dm3] 2R_22500647_SNP [dm6]	T	G	1.264e^-4	1	INTRON px
3R	14706015	3R_14706015_SNP [dm3] 3R_18880293_SNP [dm6]	G	A	1.270e^-4	1	INTERGENIC
3L	18732171	3L_18732171_SNP [dm3] 3L_18739071_SNP [dm6]	A	C	1.274e^-4	1	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	10990417	3L_10990417_SNP [dm3] 3L_10997317_SNP [dm6]	A	T	1.278e^-4	1	INTRON klu	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	12758388	2R_12758388_SNP [dm3] 2R_16870883_SNP [dm6]	A	T	1.279e^-4	1	INTRON CG6426
2L	2600192	2L_2600192_SNP [dm3] 2L_2600192_SNP [dm6]	A	C	1.292e^-4	1	UPSTREAM CR44790 DOWNSTREAM CR44789 INTERGENIC
2L	14719558	2L_14719558_SNP [dm3] 2L_14719558_SNP [dm6]	T	G	1.294e^-4	1	INTERGENIC
2L	3638887	2L_3638887_SNP [dm3] 2L_3638887_SNP [dm6]	A	G	1.295e^-4	1	INTRON for	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10968143	3L_10968143_SNP [dm3] 3L_10975043_SNP [dm6]	C	G	1.302e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
X	5892875	X_5892875_SNP [dm3] X_5998842_SNP [dm6]	A	T	1.303e^-4	1	INTRON CG4766	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	5789945	3L_5789945_SNP [dm3] 3L_5796845_SNP [dm6]	C	T	1.319e^-4	1	UPSTREAM Tektin-C DOWNSTREAM S6k INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo
3L	17453004	3L_17453004_SNP [dm3] 3L_17459904_SNP [dm6]	C	A	1.325e^-4	1	UPSTREAM CR44565 INTERGENIC
3R	13380372	3R_13380372_SNP [dm3] 3R_17554650_SNP [dm6]	G	C	1.330e^-4	1	INTERGENIC
3L	12933381	3L_12933381_SNP [dm3] 3L_12940281_SNP [dm6]	A	G	1.333e^-4	1	INTERGENIC
2L	5103416	2L_5103416_SNP [dm3] 2L_5103416_SNP [dm6]	G	A	1.334e^-4	1	NON_SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13517088	3R_13517088_SNP [dm3] 3R_17691366_SNP [dm6]	A	G	1.335e^-4	1	SYNONYMOUS_CODING osa	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14151557	3R_14151557_SNP [dm3] 3R_18325835_SNP [dm6]	C	T	1.339e^-4	1	INTRON CG31235	TF binding site mE1_TFBS_chinmo
3L	9508285	3L_9508285_SNP [dm3] 3L_9515185_SNP [dm6]	G	A	1.341e^-4	1	SPLICE_SITE_REGION CG33700 INTRON CG33700	TF binding site mE1_TFBS_sbb
2R	12540596	2R_12540596_SNP [dm3] 2R_16653091_SNP [dm6]	G	C	1.349e^-4	1	UPSTREAM Amyrel DOWNSTREAM Nach INTERGENIC
2L	1007000	2L_1007000_DEL [dm3] 2L_1007000_DEL [dm6]	AA	A	1.355e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2L	12208794	2L_12208794_SNP [dm3] 2L_12208794_SNP [dm6]	T	A	1.356e^-4	1	SYNONYMOUS_CODING CG31759 INTRON aret
3R	10224605	3R_10224605_SNP [dm3] 3R_14398883_SNP [dm6]	C	T	1.356e^-4	1	INTRON cv-c
2R	4998326	2R_4998326_SNP [dm3] 2R_9110821_SNP [dm6]	A	G	1.358e^-4	1	UTR_5_PRIME tsu DOWNSTREAM Mys45A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
3L	14412397	3L_14412397_SNP [dm3] 3L_14419297_SNP [dm6]	T	G	1.359e^-4	1	INTRON bbg
3L	10032789	3L_10032789_SNP [dm3] 3L_10039689_SNP [dm6]	A	G	1.369e^-4	1	INTRON dpr6	TF binding site BDTNP1_TFBS_dl
3R	21034765	3R_21034765_SNP [dm3] 3R_25209043_SNP [dm6]	C	T	1.371e^-4	1	UPSTREAM CG13654 & 1 other INTRON CG13654	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	19284340	X_19284340_DEL [dm3] X_19390307_DEL [dm6]	AA	A	1.378e^-4	1	INTRON kek5
3R	26729201	3R_26729201_SNP [dm3] 3R_30903479_SNP [dm6]	A	G	1.384e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	4614783	2L_4614783_SNP [dm3] 2L_4614783_SNP [dm6]	A	G	1.386e^-4	1	UPSTREAM dp INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	10115933	2L_10115933_SNP [dm3] 2L_10115933_SNP [dm6]	C	A	1.390e^-4	1	INTRON CG44153 & 1 other
3R	402492	3R_402492_SNP [dm3] 3R_4576770_SNP [dm6]	T	C	1.407e^-4	1	INTERGENIC	transposable element FlyBase
2R	8352038	2R_8352038_SNP [dm3] 2R_12464533_SNP [dm6]	C	T	1.416e^-4	1	SYNONYMOUS_CODING Lac	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3519561	2L_3519561_SNP [dm3] 2L_3519561_SNP [dm6]	A	G	1.418e^-4	1	UTR_5_PRIME CG3213 UPSTREAM CG8851	TF binding site mE1_TFBS_cad
2R	4965670	2R_4965670_SNP [dm3] 2R_9078165_SNP [dm6]	T	A	1.422e^-4	1	UPSTREAM CG8083 DOWNSTREAM ana INTERGENIC
2R	5011192	2R_5011192_SNP [dm3] 2R_9123687_SNP [dm6]	A	T	1.433e^-4	1	UTR_3_PRIME CG18659 DOWNSTREAM GstE13
X	3169716	X_3169716_SNP [dm3] X_3275683_SNP [dm6]	T	C	1.437e^-4	1	INTRON dnc
3L	10696975	3L_10696975_SNP [dm3] 3L_10703875_SNP [dm6]	T	C	1.440e^-4	1	INTERGENIC
2R	12758393	2R_12758393_SNP [dm3] 2R_16870888_SNP [dm6]	G	T	1.440e^-4	1	INTRON CG6426
X	3169683	X_3169683_SNP [dm3] X_3275650_SNP [dm6]	C	G	1.464e^-4	1	INTRON dnc
3R	19116840	3R_19116840_SNP [dm3] 3R_23291118_SNP [dm6]	C	T	1.469e^-4	1	UTR_3_PRIME pnt UPSTREAM CG4434
3L	11544441	3L_11544441_SNP [dm3] 3L_11551341_SNP [dm6]	A	G	1.474e^-4	1	INTRON Mob2	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3R	3443789	3R_3443789_SNP [dm3] 3R_7618067_SNP [dm6]	C	A	1.475e^-4	1	INTRON CG34127
3L	11544444	3L_11544444_SNP [dm3] 3L_11551344_SNP [dm6]	A	G	1.488e^-4	1	INTRON Mob2	TF binding site mE1_TFBS_D mE1_TFBS_HSA
X	17515024	X_17515024_SNP [dm3] X_17620991_SNP [dm6]	A	G	1.490e^-4	1	INTERGENIC
3L	11545309	3L_11545309_DEL [dm3] 3L_11552209_DEL [dm6]	GC	G	1.495e^-4	1	DOWNSTREAM mir-4968 INTRON Mob2	TF binding site BDTNP1_TFBS_dl
X	20578070	X_20578070_SNP [dm3] X_20707043_SNP [dm6]	G	A	1.526e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
X	18456130	X_18456130_SNP [dm3] X_18562097_SNP [dm6]	T	A	1.528e^-4	1	INTRON Bx	TF binding site mE1_TFBS_chinmo
2R	8443988	2R_8443988_SNP [dm3] 2R_12556483_SNP [dm6]	A	T	1.537e^-4	1	INTRON fra
2R	17297856	2R_17297856_SNP [dm3] 2R_21410351_SNP [dm6]	A	G	1.543e^-4	1	INTRON Sdc
3R	16304250	3R_16304250_SNP [dm3] 3R_20478528_SNP [dm6]	G	A	1.555e^-4	1	INTRON Gfrl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12001628	X_12001628_SNP [dm3] X_12107595_SNP [dm6]	C	T	1.565e^-4	1	SYNONYMOUS_CODING CG2750 INTRON CR43960 & 1 other
3L	18666780	3L_18666780_SNP [dm3] 3L_18673680_SNP [dm6]	G	A	1.566e^-4	1	SYNONYMOUS_CODING GNBP2 UPSTREAM Capr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	15572460	2L_15572460_SNP [dm3] 2L_15572460_SNP [dm6]	G	A	1.570e^-4	1	INTRON kek3
3L	15294572	3L_15294572_SNP [dm3] 3L_15301472_SNP [dm6]	T	G	1.585e^-4	1	SYNONYMOUS_CODING Best3 DOWNSTREAM Best4	TF binding site mE1_TFBS_sens
3L	17456054	3L_17456054_SNP [dm3] 3L_17462954_SNP [dm6]	G	A	1.602e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	10445307	2L_10445307_DEL [dm3] 2L_10445307_DEL [dm6]	TACGTTCAATGCCCATT...	T	1.604e^-4	1	INTRON loh
3L	18949211	3L_18949211_SNP [dm3] 3L_18956111_SNP [dm6]	A	G	1.605e^-4	1	DOWNSTREAM CG6836 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	9907197	2R_9907197_SNP [dm3] 2R_14019692_SNP [dm6]	C	A	1.605e^-4	1	INTRON mam
2R	10333006	2R_10333006_DEL [dm3] 2R_14445501_DEL [dm6]	TAAAT	T	1.614e^-4	1	INTRON Oaz
3R	24655197	3R_24655197_SNP [dm3] 3R_28829475_SNP [dm6]	A	G	1.621e^-4	1	INTRON WASp
X	19550464	X_19550464_SNP [dm3] X_19656431_SNP [dm6]	C	T	1.622e^-4	1	SYNONYMOUS_CODING CG14215	TF binding site mE1_TFBS_cad
3L	1978764	3L_1978764_SNP [dm3] 3L_1978764_SNP [dm6]	G	A	1.624e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13763444	2L_13763444_SNP [dm3] 2L_13763444_SNP [dm6]	C	T	1.627e^-4	1	INTRON TM9SF4
X	17515032	X_17515032_SNP [dm3] X_17620999_SNP [dm6]	T	C	1.629e^-4	1	INTERGENIC
3R	19116857	3R_19116857_SNP [dm3] 3R_23291135_SNP [dm6]	T	G	1.632e^-4	1	UTR_3_PRIME pnt UPSTREAM CG4434
3L	10032916	3L_10032916_SNP [dm3] 3L_10039816_SNP [dm6]	C	A	1.637e^-4	1	INTRON dpr6	TF binding site BDTNP1_TFBS_dl
X	11971051	X_11971051_SNP [dm3] X_12077018_SNP [dm6]	A	G	1.642e^-4	1	INTRON CR43960 & 1 other
2L	3419760	2L_3419760_SNP [dm3] 2L_3419760_SNP [dm6]	A	G	1.673e^-4	1	INTRON pgant2
2R	12998903	2R_12998903_SNP [dm3] 2R_17111398_SNP [dm6]	A	T	1.681e^-4	1	INTRON CG15611
2L	10973372	2L_10973372_SNP [dm3] 2L_10973372_SNP [dm6]	G	A	1.681e^-4	1	UTR_3_PRIME CG16743 DOWNSTREAM abo & 1 other
3R	13970030	3R_13970030_SNP [dm3] 3R_18144308_SNP [dm6]	T	G	1.691e^-4	1	INTERGENIC
2L	15758371	2L_15758371_SNP [dm3] 2L_15758371_SNP [dm6]	C	T	1.708e^-4	1	SYNONYMOUS_CODING Gli	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14329081	3R_14329081_SNP [dm3] 3R_18503359_SNP [dm6]	G	A	1.713e^-4	1	INTRON fru
2L	2616422	2L_2616422_SNP [dm3] 2L_2616422_SNP [dm6]	G	A	1.714e^-4	1	INTERGENIC
3L	18951901	3L_18951901_SNP [dm3] 3L_18958801_SNP [dm6]	T	A	1.719e^-4	1	INTERGENIC	TF binding site mE1_TFBS_sbb
3R	7011205	3R_7011205_SNP [dm3] 3R_11185483_SNP [dm6]	T	C	1.722e^-4	1	INTERGENIC
3R	8389274	3R_8389274_SNP [dm3] 3R_12563552_SNP [dm6]	C	G	1.723e^-4	1	INTRON Octbeta2R
3R	3443748	3R_3443748_SNP [dm3] 3R_7618026_SNP [dm6]	C	T	1.723e^-4	1	INTRON CG34127
2R	4969919	2R_4969919_SNP [dm3] 2R_9082414_SNP [dm6]	A	C	1.741e^-4	1	UTR_5_PRIME CNT1 DOWNSTREAM CG8083
3L	15354696	3L_15354696_SNP [dm3] 3L_15361596_SNP [dm6]	A	G	1.749e^-4	1	INTERGENIC	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
3R	13380170	3R_13380170_SNP [dm3] 3R_17554448_SNP [dm6]	A	T	1.754e^-4	1	INTERGENIC
2R	16128387	2R_16128387_SNP [dm3] 2R_20240882_SNP [dm6]	C	T	1.754e^-4	1	SPLICE_SITE_REGION Efhc1.2 INTRON Efhc1.2
3R	21022015	3R_21022015_SNP [dm3] 3R_25196293_SNP [dm6]	A	G	1.758e^-4	1	SYNONYMOUS_CODING CG13653	TF binding site BDTNP1_TFBS_dl
3R	10057660	3R_10057660_SNP [dm3] 3R_14231938_SNP [dm6]	C	T	1.768e^-4	1	INTERGENIC
3L	12941910	3L_12941910_DEL [dm3] 3L_12948810_DEL [dm6]	TT	T	1.770e^-4	1	INTERGENIC
2L	14476558	2L_14476558_INS [dm3] 2L_14476558_INS [dm6]	A	AATA	1.772e^-4	1	INTERGENIC
2L	12518206	2L_12518206_SNP [dm3] 2L_12518206_SNP [dm6]	A	G	1.776e^-4	1	INTRON bun
3L	19410782	3L_19410782_SNP [dm3] 3L_19417682_SNP [dm6]	T	G	1.778e^-4	1	INTERGENIC
2R	12449171	2R_12449171_SNP [dm3] 2R_16561666_SNP [dm6]	C	T	1.780e^-4	1	INTRON DAT
X	12533652	X_12533652_SNP [dm3] X_12639619_SNP [dm6]	T	G	1.787e^-4	1	INTRON Tomosyn	TF binding site BDTNP1_TFBS_da
2R	19475618	2R_19475618_DEL [dm3] 2R_23588095_DEL [dm6]	TAGCATCAAGCTTTGAGCT...	T	1.793e^-4	1	INTRON apt	TF binding site BDTNP1_TFBS_dl
2L	16456768	2L_16456768_SNP [dm3] 2L_16456768_SNP [dm6]	A	T	1.800e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
2L	15328738	2L_15328738_SNP [dm3] 2L_15328738_SNP [dm6]	A	T	1.806e^-4	1	INTERGENIC
X	3169708	X_3169708_SNP [dm3] X_3275675_SNP [dm6]	C	T	1.833e^-4	1	INTRON dnc
X	10135339	X_10135339_SNP [dm3] X_10241306_SNP [dm6]	T	A	1.836e^-4	1	INTRON Hk
3R	14151540	3R_14151540_SNP [dm3] 3R_18325818_SNP [dm6]	T	A	1.851e^-4	1	INTRON CG31235	TF binding site mE1_TFBS_chinmo
3L	19410768	3L_19410768_SNP [dm3] 3L_19417668_SNP [dm6]	C	T	1.860e^-4	1	INTERGENIC
3L	18666804	3L_18666804_SNP [dm3] 3L_18673704_SNP [dm6]	G	C	1.874e^-4	1	NON_SYNONYMOUS_CODING GNBP2 UPSTREAM Capr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	15295316	3L_15295316_SNP [dm3] 3L_15302216_SNP [dm6]	C	A	1.887e^-4	1	SYNONYMOUS_CODING Best3	TF binding site mE1_TFBS_sens
3L	17214775	3L_17214775_SNP [dm3] 3L_17221675_SNP [dm6]	C	T	1.897e^-4	1	INTRON Rbp6
3L	747347	3L_747347_SNP [dm3] 3L_747347_SNP [dm6]	G	C	1.900e^-4	1	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	15880257	3L_15880257_SNP [dm3] 3L_15887157_SNP [dm6]	A	T	1.903e^-4	1	INTRON pHCl
2L	9147083	2L_9147083_SNP [dm3] 2L_9147083_SNP [dm6]	G	A	1.908e^-4	1	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12731006	3R_12731006_SNP [dm3] 3R_16905284_SNP [dm6]	T	A	1.913e^-4	1	INTRON iab-8	TF binding site mE1_TFBS_HSA
X	10285669	X_10285669_INS [dm3] X_10391636_INS [dm6]	G	GGGTGGGTAATGAGAGCTGC...	1.919e^-4	1	INTRON flw
2R	10175535	2R_10175535_SNP [dm3] 2R_14288030_SNP [dm6]	G	C	1.925e^-4	1	UPSTREAM Ih INTRON Ih
2L	11296201	2L_11296201_SNP [dm3] 2L_11296201_SNP [dm6]	G	A	1.926e^-4	1	INTERGENIC
3L	9499668	3L_9499668_SNP [dm3] 3L_9506568_SNP [dm6]	G	A	1.927e^-4	1	DOWNSTREAM CG3408 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11414043	3R_11414043_SNP [dm3] 3R_15588321_SNP [dm6]	C	A	1.930e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sens
2L	2588672	2L_2588672_SNP [dm3] 2L_2588672_SNP [dm6]	A	G	1.931e^-4	1	INTERGENIC
2L	1627651	2L_1627651_SNP [dm3] 2L_1627651_SNP [dm6]	A	G	1.936e^-4	1	INTERGENIC
3L	17265955	3L_17265955_SNP [dm3] 3L_17272855_SNP [dm6]	C	T	1.940e^-4	1	INTERGENIC
2L	2488420	2L_2488420_SNP [dm3] 2L_2488420_SNP [dm6]	T	C	1.941e^-4	1	UTR_3_PRIME Slh	enhancer FlyBase
3L	18669158	3L_18669158_SNP [dm3] 3L_18676058_SNP [dm6]	C	T	1.950e^-4	1	NON_SYNONYMOUS_CODING GNBP1 UPSTREAM GNBP2
3R	19206213	3R_19206213_SNP [dm3] 3R_23380491_SNP [dm6]	A	G	1.952e^-4	1	INTRON CG4393	TF binding site mE1_TFBS_chinmo
X	3978462	X_3978462_SNP [dm3] X_4084429_SNP [dm6]	A	T	1.971e^-4	1	INTRON CG43689	TF binding site mE1_TFBS_chinmo
2R	12758468	2R_12758468_SNP [dm3] 2R_16870963_SNP [dm6]	A	G	1.974e^-4	1	INTRON CG6426
3R	4615518	3R_4615518_SNP [dm3] 3R_8789796_SNP [dm6]	G	C	1.986e^-4	1	INTRON Pif1B & 1 other
3R	12049688	3R_12049688_SNP [dm3] 3R_16223966_SNP [dm6]	A	G	1.988e^-4	1	DOWNSTREAM CR45643 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12540521	2R_12540521_DEL [dm3] 2R_16653016_DEL [dm6]	TCGAATCT	A	1.994e^-4	1	UPSTREAM Amyrel DOWNSTREAM Nach INTERGENIC
3L	18668844	3L_18668844_SNP [dm3] 3L_18675744_SNP [dm6]	G	T	1.994e^-4	1	UPSTREAM GNBP1 & 1 other INTERGENIC
3L	10032937	3L_10032937_SNP [dm3] 3L_10039837_SNP [dm6]	T	G	1.995e^-4	1	INTRON dpr6	TF binding site BDTNP1_TFBS_dl
3R	2805495	3R_2805495_SNP [dm3] 3R_6979773_SNP [dm6]	A	T	2.002e^-4	1	INTRON Antp	TF binding site BDTNP1_TFBS_dl
3R	3063043	3R_3063043_SNP [dm3] 3R_7237321_SNP [dm6]	G	T	2.003e^-4	1	INTRON CG14608
3L	9719065	3L_9719065_SNP [dm3] 3L_9725965_SNP [dm6]	C	G	2.006e^-4	1	SYNONYMOUS_CODING defl UPSTREAM Naa60	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1544016	2L_1544016_SNP [dm3] 2L_1544016_SNP [dm6]	G	C	2.006e^-4	1	INTERGENIC
X	6625440	X_6625440_SNP [dm3] X_6731407_SNP [dm6]	T	C	2.014e^-4	1	UPSTREAM CG3168 INTRON CG3168
2L	16362195	2L_16362195_SNP [dm3] 2L_16362195_SNP [dm6]	C	T	2.021e^-4	1	INTERGENIC
2R	12109322	2R_12109322_SNP [dm3] 2R_16221817_SNP [dm6]	T	C	2.021e^-4	1	UPSTREAM mrj DOWNSTREAM CG7798 EXON CR43898	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	7958113	2L_7958113_SNP [dm3] 2L_7958113_SNP [dm6]	T	A	2.022e^-4	1	INTRON Snoo	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	420076	3R_420076_SNP [dm3] 3R_4594354_SNP [dm6]	G	A	2.028e^-4	1	INTERGENIC
2L	2787504	2L_2787504_SNP [dm3] 2L_2787504_SNP [dm6]	G	T	2.028e^-4	1	INTRON Syt1
2R	8814591	2R_8814591_SNP [dm3] 2R_12927086_SNP [dm6]	T	A	2.032e^-4	1	INTRON sug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4424763	2L_4424763_SNP [dm3] 2L_4424763_SNP [dm6]	G	A	2.040e^-4	1	INTRON CG15431
2L	3419727	2L_3419727_SNP [dm3] 2L_3419727_SNP [dm6]	A	G	2.044e^-4	1	INTRON pgant2
2R	12540542	2R_12540542_DEL [dm3] 2R_16653037_DEL [dm6]	AGTTCTTCAAGACAACAC...	A	2.048e^-4	1	UPSTREAM Amyrel DOWNSTREAM Nach INTERGENIC
2R	6198348	2R_6198348_SNP [dm3] 2R_10310843_SNP [dm6]	C	T	2.051e^-4	1	SYNONYMOUS_CODING CG12909 DOWNSTREAM Obp46a	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3L	14205341	3L_14205341_SNP [dm3] 3L_14212241_SNP [dm6]	G	A	2.056e^-4	1	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run
2L	2617093	2L_2617093_SNP [dm3] 2L_2617093_SNP [dm6]	G	A	2.060e^-4	1	INTERGENIC
3L	744897	3L_744897_SNP [dm3] 3L_744897_SNP [dm6]	A	T	2.076e^-4	1	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18668849	3L_18668849_SNP [dm3] 3L_18675749_SNP [dm6]	G	T	2.079e^-4	1	UPSTREAM GNBP1 & 1 other INTERGENIC
2L	11297522	2L_11297522_SNP [dm3] 2L_11297522_SNP [dm6]	A	G	2.083e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	2617779	2L_2617779_SNP [dm3] 2L_2617779_SNP [dm6]	G	A	2.091e^-4	1	INTERGENIC
X	20578027	X_20578027_SNP [dm3] X_20707000_SNP [dm6]	T	C	2.094e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
2L	7958412	2L_7958412_SNP [dm3] 2L_7958412_SNP [dm6]	T	C	2.096e^-4	1	INTRON Snoo
3R	24491392	3R_24491392_SNP [dm3] 3R_28665670_SNP [dm6]	G	T	2.100e^-4	1	INTERGENIC
3R	15920851	3R_15920851_SNP [dm3] 3R_20095129_SNP [dm6]	C	T	2.100e^-4	1	INTERGENIC
X	10978063	X_10978063_SNP [dm3] X_11084030_SNP [dm6]	G	A	2.112e^-4	1	SYNONYMOUS_CODING sev	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12540539	2R_12540539_SNP [dm3] 2R_16653034_SNP [dm6]	G	T	2.118e^-4	1	UPSTREAM Amyrel DOWNSTREAM Nach INTERGENIC
3L	10032933	3L_10032933_SNP [dm3] 3L_10039833_SNP [dm6]	A	G	2.124e^-4	1	INTRON dpr6	TF binding site BDTNP1_TFBS_dl
3L	17474584	3L_17474584_SNP [dm3] 3L_17481484_SNP [dm6]	A	C	2.127e^-4	1	SPLICE_SITE_REGION CG6333 UTR_5_PRIME CG6333
3L	1324129	3L_1324129_SNP [dm3] 3L_1324129_SNP [dm6]	G	A	2.138e^-4	1	UPSTREAM Myo61F INTRON Myo61F EXON CR45166
2L	16293912	2L_16293912_MNP [dm3] 2L_16293912_MNP [dm6]	TGC	CAT	2.159e^-4	1	UPSTREAM CG13258 & 2 others INTERGENIC	transposable element FlyBase
X	13085287	X_13085287_SNP [dm3] X_13191254_SNP [dm6]	G	C	2.162e^-4	1	SYNONYMOUS_CODING CG12723	TF binding site mE1_TFBS_chinmo
2L	4144579	2L_4144579_SNP [dm3] 2L_4144579_SNP [dm6]	T	A	2.162e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	1906681	2L_1906681_SNP [dm3] 2L_1906681_SNP [dm6]	A	C	2.167e^-4	1	INTRON CG7337
3R	11414042	3R_11414042_SNP [dm3] 3R_15588320_SNP [dm6]	C	A	2.167e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sens
3L	10654735	3L_10654735_SNP [dm3] 3L_10661635_SNP [dm6]	C	T	2.168e^-4	1	NON_SYNONYMOUS_CODING CG8003 UPSTREAM CG32066	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	10968079	3L_10968079_SNP [dm3] 3L_10974979_SNP [dm6]	A	T	2.169e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2R	7465046	2R_7465046_SNP [dm3] 2R_11577541_SNP [dm6]	C	A	2.179e^-4	1	UTR_3_PRIME tou
3L	10126784	3L_10126784_SNP [dm3] 3L_10133684_SNP [dm6]	A	T	2.179e^-4	1	INTRON dpr6
3R	3961857	3R_3961857_SNP [dm3] 3R_8136135_SNP [dm6]	G	T	2.183e^-4	1	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	417624	3R_417624_SNP [dm3] 3R_4591902_SNP [dm6]	C	T	2.184e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19287487	3L_19287487_SNP [dm3] 3L_19294387_SNP [dm6]	A	G	2.187e^-4	1	UPSTREAM fal INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	12555572	3L_12555572_SNP [dm3] 3L_12562472_SNP [dm6]	G	A	2.190e^-4	1	INTRON sowah
2L	8052454	2L_8052454_SNP [dm3] 2L_8052454_SNP [dm6]	G	A	2.200e^-4	1	SYNONYMOUS_CODING CG7466
3L	3044350	3L_3044350_SNP [dm3] 3L_3044350_SNP [dm6]	A	T	2.217e^-4	1	UTR_3_PRIME scramb2 DOWNSTREAM Jafrac2	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	4876515	X_4876515_DEL [dm3] X_4982482_DEL [dm6]	CTGCTGCCCAC...	C	2.217e^-4	1	INTRON CR44833
X	18934689	X_18934689_SNP [dm3] X_19040656_SNP [dm6]	G	T	2.221e^-4	1	INTERGENIC
3R	12049648	3R_12049648_SNP [dm3] 3R_16223926_SNP [dm6]	A	T	2.227e^-4	1	DOWNSTREAM CR45643 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	13550322	3L_13550322_SNP [dm3] 3L_13557222_SNP [dm6]	G	T	2.228e^-4	1	UPSTREAM CR45178 INTRON bru-3
3L	1101648	3L_1101648_SNP [dm3] 3L_1101648_SNP [dm6]	T	C	2.230e^-4	1	UPSTREAM bab1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	11964464	2R_11964464_SNP [dm3] 2R_16076959_SNP [dm6]	C	T	2.250e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11634904	2R_11634904_SNP [dm3] 2R_15747399_SNP [dm6]	T	C	2.258e^-4	1	INTRON CG30089	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	12730256	3R_12730256_SNP [dm3] 3R_16904534_SNP [dm6]	G	T	2.263e^-4	1	INTRON iab-8
3L	10968098	3L_10968098_SNP [dm3] 3L_10974998_SNP [dm6]	G	A	2.264e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3L	19413580	3L_19413580_SNP [dm3] 3L_19420480_SNP [dm6]	C	T	2.264e^-4	1	INTERGENIC
3R	16375868	3R_16375868_SNP [dm3] 3R_20550146_SNP [dm6]	C	T	2.277e^-4	1	INTRON Stat92E	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Stat92E
X	10978048	X_10978048_SNP [dm3] X_11084015_SNP [dm6]	G	T	2.280e^-4	1	SYNONYMOUS_CODING sev	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9073880	2L_9073880_SNP [dm3] 2L_9073880_SNP [dm6]	C	T	2.283e^-4	1	INTERGENIC
3R	15920900	3R_15920900_SNP [dm3] 3R_20095178_SNP [dm6]	C	A	2.286e^-4	1	INTERGENIC
2R	4996519	2R_4996519_SNP [dm3] 2R_9109014_SNP [dm6]	C	T	2.291e^-4	1	INTRON Pmm45A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	10032835	3L_10032835_SNP [dm3] 3L_10039735_SNP [dm6]	A	G	2.292e^-4	1	INTRON dpr6	TF binding site BDTNP1_TFBS_dl
X	17395628	X_17395628_SNP [dm3] X_17501595_SNP [dm6]	C	T	2.302e^-4	1	INTRON CG43658
3L	7022291	3L_7022291_SNP [dm3] 3L_7029191_SNP [dm6]	G	A	2.305e^-4	1	INTRON Mp
3R	11522770	3R_11522770_DEL [dm3] 3R_15697048_DEL [dm6]	AC	A	2.319e^-4	1	UTR_3_PRIME CG5399 UPSTREAM CR45635 DOWNSTREAM CG5399
3L	14835250	3L_14835250_SNP [dm3] 3L_14842150_SNP [dm6]	T	A	2.324e^-4	1	INTRON CG17839
3L	9084006	3L_9084006_SNP [dm3] 3L_9090906_SNP [dm6]	A	C	2.325e^-4	1	SYNONYMOUS_CODING Tequila	TF binding site mE1_TFBS_cad
2L	4139015	2L_4139015_SNP [dm3] 2L_4139015_SNP [dm6]	C	T	2.327e^-4	1	INTERGENIC
2R	14793138	2R_14793138_SNP [dm3] 2R_18905633_SNP [dm6]	C	G	2.329e^-4	1	INTRON sano
3R	19831742	3R_19831742_SNP [dm3] 3R_24006020_SNP [dm6]	G	A	2.355e^-4	1	INTRON KrT95D	TF binding site BDTNP1_TFBS_dl
3R	18502268	3R_18502268_SNP [dm3] 3R_22676546_SNP [dm6]	C	T	2.363e^-4	1	INTRON CG45058	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	21046024	X_21046024_SNP [dm3] X_21174997_SNP [dm6]	C	T	2.365e^-4	1	INTERGENIC	transposable element FlyBase
3L	10810594	3L_10810594_SNP [dm3] 3L_10817494_SNP [dm6]	T	A	2.385e^-4	1	DOWNSTREAM CR45247 INTERGENIC
X	16141268	X_16141268_SNP [dm3] X_16247235_SNP [dm6]	C	T	2.386e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10811620	2L_10811620_SNP [dm3] 2L_10811620_SNP [dm6]	C	T	2.395e^-4	1	INTRON Nos
2R	4958716	2R_4958716_SNP [dm3] 2R_9071211_SNP [dm6]	T	C	2.399e^-4	1	INTRON ana	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_Med mE1_TFBS_cad
X	12618745	X_12618745_SNP [dm3] X_12724712_SNP [dm6]	T	C	2.409e^-4	1	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	12101032	2R_12101032_SNP [dm3] 2R_16213527_SNP [dm6]	C	T	2.412e^-4	1	INTRON mrj	TF binding site mE1_TFBS_inv
X	3147896	X_3147896_SNP [dm3] X_3253863_SNP [dm6]	A	C	2.428e^-4	1	INTRON dnc
3L	13654988	3L_13654988_SNP [dm3] 3L_13661888_SNP [dm6]	G	C	2.430e^-4	1	INTRON bru-3
X	14167658	X_14167658_SNP [dm3] X_14273625_SNP [dm6]	A	G	2.433e^-4	1	INTRON na	TF binding site mE1_TFBS_inv
2L	588289	2L_588289_SNP [dm3] 2L_588289_SNP [dm6]	C	T	2.446e^-4	1	INTRON Gsc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10069537	2L_10069537_SNP [dm3] 2L_10069537_SNP [dm6]	T	A	2.458e^-4	1	NON_SYNONYMOUS_CODING CG44153	TF binding site BDTNP1_TFBS_sna
3R	7144018	3R_7144018_SNP [dm3] 3R_11318296_SNP [dm6]	G	C	2.465e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10860498	2R_10860498_SNP [dm3] 2R_14972993_SNP [dm6]	C	A	2.466e^-4	1	INTRON ckn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	19287550	3L_19287550_SNP [dm3] 3L_19294450_SNP [dm6]	T	G	2.480e^-4	1	UPSTREAM fal INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	22827320	3R_22827320_SNP [dm3] 3R_27001598_SNP [dm6]	G	T	2.482e^-4	1	NON_SYNONYMOUS_CODING CG31077 INTRON RYa-R	TF binding site mE1_TFBS_sens
2R	20229018	2R_20229018_SNP [dm3] 2R_24341495_SNP [dm6]	A	C	2.494e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	3582987	2L_3582987_SNP [dm3] 2L_3582987_SNP [dm6]	G	C	2.495e^-4	1	INTERGENIC
3R	14242445	3R_14242445_SNP [dm3] 3R_18416723_SNP [dm6]	C	T	2.500e^-4	1	UTR_3_PRIME fru	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	13517145	3R_13517145_SNP [dm3] 3R_17691423_SNP [dm6]	G	C	2.504e^-4	1	SYNONYMOUS_CODING osa	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	15679199	2R_15679199_SNP [dm3] 2R_19791694_SNP [dm6]	A	G	2.521e^-4	1	INTERGENIC
2L	6619263	2L_6619263_DEL [dm3] 2L_6619263_DEL [dm6]	TCT	T	2.525e^-4	1	INTRON CG11320 EXON CR44913
3R	15294156	3R_15294156_SNP [dm3] 3R_19468434_SNP [dm6]	C	T	2.528e^-4	1	INTRON Dys	TF binding site mE1_TFBS_inv
X	8571699	X_8571699_INS [dm3] X_8677666_INS [dm6]	C	CAAG	2.528e^-4	1	INTRON CG12772	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	10964372	2L_10964372_SNP [dm3] 2L_10964372_SNP [dm6]	T	A	2.532e^-4	1	UPSTREAM dpr2 DOWNSTREAM CG33129 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk
3R	6394600	3R_6394600_SNP [dm3] 3R_10568878_SNP [dm6]	T	C	2.544e^-4	1	INTRON hth	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3R	12049634	3R_12049634_SNP [dm3] 3R_16223912_SNP [dm6]	C	A	2.549e^-4	1	DOWNSTREAM CR45643 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17326673	2R_17326673_SNP [dm3] 2R_21439168_SNP [dm6]	A	G	2.556e^-4	1	INTRON Sdc
X	13257501	X_13257501_SNP [dm3] X_13363468_SNP [dm6]	T	C	2.580e^-4	1	SYNONYMOUS_CODING Syt12
3R	25539735	3R_25539735_SNP [dm3] 3R_29714013_SNP [dm6]	A	G	2.581e^-4	1	UPSTREAM Obp99d & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	8363860	2R_8363860_SNP [dm3] 2R_12476355_SNP [dm6]	C	T	2.591e^-4	1	INTRON Dh44-R2
2L	7584084	2L_7584084_SNP [dm3] 2L_7584084_SNP [dm6]	C	G	2.594e^-4	1	DOWNSTREAM Spn28B INTERGENIC
2L	18605590	2L_18605590_SNP [dm3] 2L_18605590_SNP [dm6]	T	C	2.595e^-4	1	UPSTREAM CG31789 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	378186	3R_378186_SNP [dm3] 3R_4552464_SNP [dm6]	C	A	2.596e^-4	1	INTRON CG34357
X	5261430	X_5261430_SNP [dm3] X_5367397_SNP [dm6]	T	C	2.601e^-4	1	INTRON SK
X	2355663	X_2355663_SNP [dm3] X_2461630_SNP [dm6]	G	A	2.603e^-4	1	INTRON boi
2R	17573853	2R_17573853_SNP [dm3] 2R_21686348_SNP [dm6]	C	T	2.605e^-4	1	SYNONYMOUS_CODING Tbp DOWNSTREAM CG10306	TF binding site BDTNP1_TFBS_dl
2R	12757076	2R_12757076_SNP [dm3] 2R_16869571_SNP [dm6]	T	C	2.617e^-4	1	SYNONYMOUS_CODING CG6426 DOWNSTREAM Ef1beta	TF binding site mE1_TFBS_Trl
3L	5907389	3L_5907389_SNP [dm3] 3L_5914289_SNP [dm6]	T	A	2.623e^-4	1	INTRON CG13288
2R	6496487	2R_6496487_SNP [dm3] 2R_10608982_SNP [dm6]	G	A	2.629e^-4	1	INTRON psq
3R	18677140	3R_18677140_SNP [dm3] 3R_22851418_SNP [dm6]	G	A	2.631e^-4	1	EXON CR43846	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2L	10095903	2L_10095903_SNP [dm3] 2L_10095903_SNP [dm6]	T	G	2.632e^-4	1	INTRON CG44153 & 1 other
2L	11297788	2L_11297788_SNP [dm3] 2L_11297788_SNP [dm6]	A	C	2.648e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	11337506	3L_11337506_SNP [dm3] 3L_11344406_SNP [dm6]	G	A	2.651e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	4976783	2R_4976783_SNP [dm3] 2R_9089278_SNP [dm6]	T	C	2.657e^-4	1	DOWNSTREAM CG8080 INTRON Dbp45A
X	11970915	X_11970915_DEL [dm3] X_12076882_DEL [dm6]	ATTCACGA	A	2.667e^-4	1	INTRON CR43960 & 1 other
2R	11220968	2R_11220968_SNP [dm3] 2R_15333463_SNP [dm6]	G	A	2.669e^-4	1	INTRON Hr51
3R	15920861	3R_15920861_SNP [dm3] 3R_20095139_SNP [dm6]	A	G	2.672e^-4	1	INTERGENIC
2R	20370835	2R_20370835_SNP [dm3] 2R_24483312_SNP [dm6]	T	C	2.676e^-4	1	INTRON CG13579
2L	14703380	2L_14703380_SNP [dm3] 2L_14703380_SNP [dm6]	T	A	2.678e^-4	1	INTERGENIC
X	11799470	X_11799470_SNP [dm3] X_11905437_SNP [dm6]	T	C	2.689e^-4	1	UPSTREAM Upf1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	9263166	2R_9263166_SNP [dm3] 2R_13375661_SNP [dm6]	C	A	2.695e^-4	1	DOWNSTREAM CG10814 INTERGENIC
3R	13970073	3R_13970073_SNP [dm3] 3R_18144351_SNP [dm6]	G	A	2.695e^-4	1	INTERGENIC
2R	12370636	2R_12370636_SNP [dm3] 2R_16483131_SNP [dm6]	A	C	2.701e^-4	1	INTERGENIC
2R	12758584	2R_12758584_SNP [dm3] 2R_16871079_SNP [dm6]	T	C	2.702e^-4	1	INTRON CG6426
3R	18499516	3R_18499516_SNP [dm3] 3R_22673794_SNP [dm6]	A	G	2.731e^-4	1	UPSTREAM CG45058 INTRON CG45058	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	15920860	3R_15920860_SNP [dm3] 3R_20095138_SNP [dm6]	A	C	2.734e^-4	1	INTERGENIC
2R	10472242	2R_10472242_SNP [dm3] 2R_14584737_SNP [dm6]	G	A	2.745e^-4	1	UTR_3_PRIME ttv
3R	12953601	3R_12953601_SNP [dm3] 3R_17127879_SNP [dm6]	T	C	2.764e^-4	1	UPSTREAM CG17477 & 2 others INTRON CG31269
3L	9888233	3L_9888233_SNP [dm3] 3L_9895133_SNP [dm6]	G	A	2.764e^-4	1	UTR_3_PRIME CG6707 UPSTREAM CG14164 & 1 other
3R	19212198	3R_19212198_SNP [dm3] 3R_23386476_SNP [dm6]	T	G	2.773e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	9504857	3L_9504857_SNP [dm3] 3L_9511757_SNP [dm6]	T	A	2.801e^-4	1	UPSTREAM snoRNA:Me28S-G3253 & 1 other DOWNSTREAM CG33703 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_HSA
3L	10032924	3L_10032924_SNP [dm3] 3L_10039824_SNP [dm6]	T	A	2.803e^-4	1	INTRON dpr6	TF binding site BDTNP1_TFBS_dl
3R	3440349	3R_3440349_SNP [dm3] 3R_7614627_SNP [dm6]	T	G	2.811e^-4	1	INTRON CG34127
3L	12988057	3L_12988057_SNP [dm3] 3L_12994957_SNP [dm6]	C	T	2.811e^-4	1	UPSTREAM CG11262 INTERGENIC
3L	10159551	3L_10159551_SNP [dm3] 3L_10166451_SNP [dm6]	T	C	2.821e^-4	1	NON_SYNONYMOUS_CODING CG6628 INTRON dpr10
2L	1628597	2L_1628597_SNP [dm3] 2L_1628597_SNP [dm6]	C	T	2.825e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
3R	12813126	3R_12813126_SNP [dm3] 3R_16987404_SNP [dm6]	C	T	2.830e^-4	1	UPSTREAM CG18622 INTRON CG18622
2L	16361115	2L_16361115_SNP [dm3] 2L_16361115_SNP [dm6]	T	G	2.834e^-4	1	INTERGENIC
3L	9057448	3L_9057448_SNP [dm3] 3L_9064348_SNP [dm6]	C	G	2.840e^-4	1	INTRON Argk	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6442363	2R_6442363_SNP [dm3] 2R_10554858_SNP [dm6]	A	G	2.848e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	10377496	3L_10377496_SNP [dm3] 3L_10384396_SNP [dm6]	G	A	2.853e^-4	1	INTERGENIC
3R	13380107	3R_13380107_SNP [dm3] 3R_17554385_SNP [dm6]	A	T	2.866e^-4	1	INTERGENIC
2L	7111759	2L_7111759_SNP [dm3] 2L_7111759_SNP [dm6]	A	T	2.868e^-4	1	INTRON Pvf3
X	14164611	X_14164611_SNP [dm3] X_14270578_SNP [dm6]	T	C	2.872e^-4	1	SYNONYMOUS_CODING na	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12759368	2R_12759368_SNP [dm3] 2R_16871863_SNP [dm6]	A	G	2.873e^-4	1	UPSTREAM CG6421 DOWNSTREAM CG6426 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	13085080	X_13085080_SNP [dm3] X_13191047_SNP [dm6]	A	C	2.877e^-4	1	SYNONYMOUS_CODING CG12723	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20099103	2L_20099103_SNP [dm3] 2L_20099103_SNP [dm6]	G	T	2.890e^-4	1	UTR_5_PRIME Kua INTRON Kua	TF binding site BDTNP1_TFBS_dl
3R	23641152	3R_23641152_SNP [dm3] 3R_27815430_SNP [dm6]	A	G	2.893e^-4	1	INTRON CG34353
2R	10176715	2R_10176715_SNP [dm3] 2R_14289210_SNP [dm6]	A	T	2.895e^-4	1	UTR_5_PRIME Ih UPSTREAM Ih INTRON Ih	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	16169379	3L_16169379_SNP [dm3] 3L_16176279_SNP [dm6]	T	C	2.895e^-4	1	UPSTREAM CR45754 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	16293922	2L_16293922_SNP [dm3] 2L_16293922_SNP [dm6]	C	T	2.905e^-4	1	UPSTREAM CG13258 & 2 others INTERGENIC	transposable element FlyBase
2R	15069183	2R_15069183_SNP [dm3] 2R_19181678_SNP [dm6]	A	C	2.912e^-4	1	INTRON hppy
X	8934777	X_8934777_SNP [dm3] X_9040744_SNP [dm6]	A	C	2.927e^-4	1	INTRON CR43836 & 1 other	TF binding site mE1_TFBS_bab1
3L	2525408	3L_2525408_SNP [dm3] 3L_2525408_SNP [dm6]	G	A	2.934e^-4	1	SYNONYMOUS_CODING Spn DOWNSTREAM CG32295	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	19736539	2R_19736539_SNP [dm3] 2R_23849016_SNP [dm6]	T	A	2.952e^-4	1	DOWNSTREAM eIF6 INTRON ytr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10874823	2R_10874823_SNP [dm3] 2R_14987318_SNP [dm6]	C	T	2.958e^-4	1	DOWNSTREAM CG7639 INTRON pcs	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2R	10860511	2R_10860511_SNP [dm3] 2R_14973006_SNP [dm6]	T	A	2.959e^-4	1	INTRON ckn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21596173	2L_21596173_DEL [dm3] 2L_21596173_DEL [dm6]	TT	T	2.969e^-4	1	INTERGENIC
3L	18951581	3L_18951581_SNP [dm3] 3L_18958481_SNP [dm6]	T	C	2.973e^-4	1	INTERGENIC	TF binding site mE1_TFBS_sbb
X	21046595	X_21046595_SNP [dm3] X_21175568_SNP [dm6]	G	A	2.976e^-4	1	INTERGENIC
3R	13390757	3R_13390757_SNP [dm3] 3R_17565035_SNP [dm6]	A	G	2.984e^-4	1	INTRON Hmx
X	2389624	X_2389624_SNP [dm3] X_2495591_SNP [dm6]	A	G	2.998e^-4	1	INTRON trol	TF binding site mE1_TFBS_sens
3L	10649543	3L_10649543_SNP [dm3] 3L_10656443_SNP [dm6]	T	A	2.998e^-4	1	INTRON CG32066	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11776602	2R_11776602_SNP [dm3] 2R_15889097_SNP [dm6]	C	T	3.018e^-4	1	INTRON sli	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	6395114	X_6395114_SNP [dm3] X_6501081_SNP [dm6]	T	C	3.019e^-4	1	INTRON CG42340
3R	2588372	3R_2588372_SNP [dm3] 3R_6762650_SNP [dm6]	G	C	3.019e^-4	1	UTR_5_PRIME Ama UPSTREAM Ama & 1 other INTRON CR45593	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
3R	18676965	3R_18676965_SNP [dm3] 3R_22851243_SNP [dm6]	A	G	3.025e^-4	1	EXON CR43846	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
2R	6847843	2R_6847843_SNP [dm3] 2R_10960338_SNP [dm6]	C	T	3.032e^-4	1	INTERGENIC
2L	16161392	2L_16161392_SNP [dm3] 2L_16161392_SNP [dm6]	G	T	3.041e^-4	1	INTERGENIC
3R	10057639	3R_10057639_SNP [dm3] 3R_14231917_SNP [dm6]	T	A	3.043e^-4	1	INTERGENIC
3R	12729835	3R_12729835_SNP [dm3] 3R_16904113_SNP [dm6]	T	C	3.053e^-4	1	INTRON iab-8
X	20577938	X_20577938_SNP [dm3] X_20706911_SNP [dm6]	G	T	3.061e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
3R	402486	3R_402486_SNP [dm3] 3R_4576764_SNP [dm6]	G	A	3.068e^-4	1	INTERGENIC	transposable element FlyBase
3L	8361031	3L_8361031_SNP [dm3] 3L_8367931_SNP [dm6]	A	G	3.077e^-4	1	INTERGENIC
X	12877705	X_12877705_SNP [dm3] X_12983672_SNP [dm6]	A	G	3.079e^-4	1	UPSTREAM CG32643 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1544152	2L_1544152_SNP [dm3] 2L_1544152_SNP [dm6]	A	G	3.082e^-4	1	INTERGENIC
2R	5971571	2R_5971571_SNP [dm3] 2R_10084066_SNP [dm6]	C	A	3.118e^-4	1	UTR_3_PRIME egr
2L	12331357	2L_12331357_SNP [dm3] 2L_12331357_SNP [dm6]	C	T	3.125e^-4	1	INTERGENIC
3L	5211697	3L_5211697_DEL [dm3] 3L_5218597_DEL [dm6]	GTG	G	3.126e^-4	1	INTRON shep
3L	12565312	3L_12565312_SNP [dm3] 3L_12572212_SNP [dm6]	C	T	3.127e^-4	1	INTRON sowah	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	14069443	3L_14069443_SNP [dm3] 3L_14076343_SNP [dm6]	A	C	3.134e^-4	1	UPSTREAM btl DOWNSTREAM Pex1 INTRON btl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15319427	2L_15319427_SNP [dm3] 2L_15319427_SNP [dm6]	A	T	3.136e^-4	1	UPSTREAM nht INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19287491	3L_19287491_SNP [dm3] 3L_19294391_SNP [dm6]	G	A	3.144e^-4	1	UPSTREAM fal INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	15294153	3R_15294153_SNP [dm3] 3R_19468431_SNP [dm6]	T	C	3.156e^-4	1	INTRON Dys	TF binding site mE1_TFBS_inv
3L	9504514	3L_9504514_SNP [dm3] 3L_9511414_SNP [dm6]	G	A	3.158e^-4	1	UPSTREAM snoRNA:Me28S-G3253 & 1 other DOWNSTREAM CG33703 INTRON RpS9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
X	13263826	X_13263826_SNP [dm3] X_13369793_SNP [dm6]	C	T	3.171e^-4	1	UPSTREAM CG1640 INTRON dmrt11E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4994284	2R_4994284_SNP [dm3] 2R_9106779_SNP [dm6]	A	G	3.175e^-4	1	UTR_3_PRIME Vang DOWNSTREAM Pmm45A
2R	7400804	2R_7400804_SNP [dm3] 2R_11513299_SNP [dm6]	G	T	3.187e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_eve mE1_TFBS_HSA
3R	20819349	3R_20819349_SNP [dm3] 3R_24993627_SNP [dm6]	T	C	3.193e^-4	1	INTRON tnc
2L	10579072	2L_10579072_SNP [dm3] 2L_10579072_SNP [dm6]	T	A	3.202e^-4	1	UPSTREAM CG34160 INTRON Trim9
3R	24465431	3R_24465431_SNP [dm3] 3R_28639709_SNP [dm6]	C	T	3.204e^-4	1	DOWNSTREAM CG9988 INTERGENIC
2L	5398794	2L_5398794_SNP [dm3] 2L_5398794_SNP [dm6]	A	C	3.207e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2542683	2L_2542683_SNP [dm3] 2L_2542683_SNP [dm6]	G	C	3.214e^-4	1	INTERGENIC
2R	18512501	2R_18512501_SNP [dm3] 2R_22624996_SNP [dm6]	A	T	3.224e^-4	1	INTRON CG33143
3L	10047034	3L_10047034_SNP [dm3] 3L_10053934_SNP [dm6]	T	C	3.228e^-4	1	INTRON dpr6
3R	14621611	3R_14621611_DEL [dm3] 3R_18795889_DEL [dm6]	CACAAGCCAACAAGACC...	C	3.233e^-4	1	UPSTREAM CG7720 INTERGENIC
3L	9504869	3L_9504869_SNP [dm3] 3L_9511769_SNP [dm6]	A	T	3.235e^-4	1	UPSTREAM snoRNA:Me28S-G3253 & 1 other DOWNSTREAM CG33703 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_HSA
3R	20389198	3R_20389198_SNP [dm3] 3R_24563476_SNP [dm6]	A	G	3.246e^-4	1	INTRON CG13624
3L	13676853	3L_13676853_SNP [dm3] 3L_13683753_SNP [dm6]	G	C	3.250e^-4	1	INTRON bru-3
2R	12022780	2R_12022780_SNP [dm3] 2R_16135275_SNP [dm6]	C	T	3.253e^-4	1	INTRON spin	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	12741405	3R_12741405_SNP [dm3] 3R_16915683_SNP [dm6]	C	A	3.257e^-4	1	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8360331	2R_8360331_SNP [dm3] 2R_12472826_SNP [dm6]	G	C	3.262e^-4	1	SYNONYMOUS_CODING CG8550
3L	10810536	3L_10810536_DEL [dm3] 3L_10817436_DEL [dm6]	AAGATTATAACTA...	A	3.263e^-4	1	DOWNSTREAM CR45247 INTERGENIC
2L	12331358	2L_12331358_SNP [dm3] 2L_12331358_SNP [dm6]	A	G	3.270e^-4	1	INTERGENIC
2R	4172506	2R_4172506_SNP [dm3] 2R_8285001_SNP [dm6]	G	A	3.285e^-4	1	INTERGENIC
2L	12401804	2L_12401804_SNP [dm3] 2L_12401804_SNP [dm6]	C	A	3.289e^-4	1	UTR_3_PRIME Pkd2
2L	13680862	2L_13680862_SNP [dm3] 2L_13680862_SNP [dm6]	C	T	3.290e^-4	1	INTRON CG31814	TF binding site BDTNP1_TFBS_twi
2R	18512513	2R_18512513_SNP [dm3] 2R_22625008_SNP [dm6]	A	G	3.295e^-4	1	INTRON CG33143
2L	4859476	2L_4859476_SNP [dm3] 2L_4859476_SNP [dm6]	G	A	3.301e^-4	1	INTRON pog
X	10120531	X_10120531_SNP [dm3] X_10226498_SNP [dm6]	A	G	3.306e^-4	1	UPSTREAM CG34408 INTRON CG34408	TF binding site BDTNP1_TFBS_twi
3R	12745657	3R_12745657_SNP [dm3] 3R_16919935_SNP [dm6]	A	G	3.314e^-4	1	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_zfh1
3R	12727072	3R_12727072_MNP [dm3] 3R_16901350_MNP [dm6]	GAC	CTA	3.315e^-4	1	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	13004106	2R_13004106_SNP [dm3] 2R_17116601_SNP [dm6]	T	C	3.320e^-4	1	INTERGENIC
3L	8351802	3L_8351802_SNP [dm3] 3L_8358702_SNP [dm6]	G	C	3.324e^-4	1	START_GAINED Idh UTR_5_PRIME Idh UPSTREAM Idh INTRON Idh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	17940982	3R_17940982_SNP [dm3] 3R_22115260_SNP [dm6]	C	A	3.335e^-4	1	DOWNSTREAM Ir94b & 1 other INTERGENIC
3L	12988078	3L_12988078_SNP [dm3] 3L_12994978_SNP [dm6]	G	A	3.340e^-4	1	UPSTREAM CG11262 INTERGENIC
2L	4341868	2L_4341868_SNP [dm3] 2L_4341868_SNP [dm6]	C	A	3.342e^-4	1	INTRON Atet
3L	14835274	3L_14835274_SNP [dm3] 3L_14842174_SNP [dm6]	G	A	3.346e^-4	1	INTRON CG17839
2R	15679206	2R_15679206_SNP [dm3] 2R_19791701_SNP [dm6]	G	A	3.360e^-4	1	INTERGENIC
2R	15679211	2R_15679211_SNP [dm3] 2R_19791706_SNP [dm6]	G	A	3.360e^-4	1	INTERGENIC
2L	1475350	2L_1475350_SNP [dm3] 2L_1475350_SNP [dm6]	A	T	3.366e^-4	1	INTERGENIC
3L	10029457	3L_10029457_SNP [dm3] 3L_10036357_SNP [dm6]	G	A	3.368e^-4	1	INTRON dpr6
2R	12540438	2R_12540438_INS [dm3] 2R_16652933_INS [dm6]	A	AACCAGATAAATTA...	3.370e^-4	1	UPSTREAM Amyrel DOWNSTREAM Nach INTERGENIC
2R	16494865	2R_16494865_SNP [dm3] 2R_20607360_SNP [dm6]	T	G	3.371e^-4	1	UTR_3_PRIME Hil DOWNSTREAM bl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	15152557	X_15152557_SNP [dm3] X_15258524_SNP [dm6]	T	A	3.373e^-4	1	INTERGENIC
X	3961108	X_3961108_INS [dm3] X_4067075_INS [dm6]	A	ATAGATCTCTTGATAGA...	3.378e^-4	1	INTERGENIC
3R	19205304	3R_19205304_SNP [dm3] 3R_23379582_SNP [dm6]	C	T	3.379e^-4	1	SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	10135333	X_10135333_SNP [dm3] X_10241300_SNP [dm6]	T	C	3.379e^-4	1	INTRON Hk
3L	10032593	3L_10032593_SNP [dm3] 3L_10039493_SNP [dm6]	G	A	3.388e^-4	1	INTRON dpr6
2L	1714145	2L_1714145_SNP [dm3] 2L_1714145_SNP [dm6]	G	C	3.388e^-4	1	INTRON frtz	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	11474450	2R_11474450_SNP [dm3] 2R_15586945_SNP [dm6]	T	A	3.391e^-4	1	INTERGENIC
3R	12417072	3R_12417072_SNP [dm3] 3R_16591350_SNP [dm6]	T	C	3.397e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	14695171	3R_14695171_SNP [dm3] 3R_18869449_SNP [dm6]	G	A	3.402e^-4	1	INTERGENIC
3L	18951495	3L_18951495_SNP [dm3] 3L_18958395_SNP [dm6]	C	A	3.409e^-4	1	INTERGENIC
3L	14835259	3L_14835259_SNP [dm3] 3L_14842159_SNP [dm6]	A	G	3.413e^-4	1	INTRON CG17839
2L	2136494	2L_2136494_SNP [dm3] 2L_2136494_SNP [dm6]	T	C	3.426e^-4	1	SYNONYMOUS_CODING GlyP DOWNSTREAM tho2	TF binding site mE1_TFBS_cad
3L	8504181	3L_8504181_SNP [dm3] 3L_8511081_SNP [dm6]	G	C	3.427e^-4	1	INTRON CG6745
2L	8292776	2L_8292776_INS [dm3] 2L_8292776_INS [dm6]	T	TT	3.439e^-4	1	INTRON Btk29A	TF binding site mE1_TFBS_cnc
2L	4342106	2L_4342106_SNP [dm3] 2L_4342106_SNP [dm6]	C	T	3.440e^-4	1	SYNONYMOUS_CODING Atet
3R	19212248	3R_19212248_SNP [dm3] 3R_23386526_SNP [dm6]	T	C	3.443e^-4	1	INTERGENIC	TF binding site mE1_TFBS_Trl
3R	12730130	3R_12730130_SNP [dm3] 3R_16904408_SNP [dm6]	C	A	3.450e^-4	1	INTRON iab-8
2L	15760127	2L_15760127_SNP [dm3] 2L_15760127_SNP [dm6]	C	G	3.453e^-4	1	INTRON Gli	TF binding site mE1_TFBS_cad
2R	4954857	2R_4954857_SNP [dm3] 2R_9067352_SNP [dm6]	G	A	3.460e^-4	1	INTRON ana
2L	8796843	2L_8796843_SNP [dm3] 2L_8796843_SNP [dm6]	C	T	3.461e^-4	1	INTERGENIC	TF binding site mE1_TFBS_sens
3L	3842089	3L_3842089_DEL [dm3] 3L_3842089_DEL [dm6]	TAT	T	3.464e^-4	1	UTR_3_PRIME enc DOWNSTREAM enc
2L	16293965	2L_16293965_SNP [dm3] 2L_16293965_SNP [dm6]	C	G	3.467e^-4	1	UPSTREAM CG13258 & 2 others INTERGENIC
2R	16130476	2R_16130476_SNP [dm3] 2R_20242971_SNP [dm6]	T	C	3.468e^-4	1	SYNONYMOUS_CODING CG11208 DOWNSTREAM Efhc1.2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13516797	3R_13516797_SNP [dm3] 3R_17691075_SNP [dm6]	T	C	3.477e^-4	1	SYNONYMOUS_CODING osa	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	4997971	2R_4997971_SNP [dm3] 2R_9110466_SNP [dm6]	T	G	3.478e^-4	1	UPSTREAM Pmm45A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
3R	19212249	3R_19212249_DEL [dm3] 3R_23386527_DEL [dm6]	AT	A	3.484e^-4	1	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	11337498	3L_11337498_SNP [dm3] 3L_11344398_SNP [dm6]	T	A	3.485e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	12988063	3L_12988063_SNP [dm3] 3L_12994963_SNP [dm6]	G	A	3.487e^-4	1	UPSTREAM CG11262 INTERGENIC
2L	14972127	2L_14972127_SNP [dm3] 2L_14972127_SNP [dm6]	A	T	3.496e^-4	1	UTR_5_PRIME CG42313
X	3246505	X_3246505_SNP [dm3] X_3352472_SNP [dm6]	T	G	3.498e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10860455	2R_10860455_SNP [dm3] 2R_14972950_SNP [dm6]	G	A	3.498e^-4	1	INTRON ckn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15681901	3L_15681901_SNP [dm3] 3L_15688801_SNP [dm6]	G	A	3.521e^-4	1	SYNONYMOUS_CODING CG34451 UPSTREAM CG34452	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1908220	2L_1908220_SNP [dm3] 2L_1908220_SNP [dm6]	G	A	3.523e^-4	1	INTRON CG7337
3R	14131086	3R_14131086_SNP [dm3] 3R_18305364_SNP [dm6]	C	A	3.527e^-4	1	SYNONYMOUS_CODING PKD DOWNSTREAM PKD	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12049650	3R_12049650_SNP [dm3] 3R_16223928_SNP [dm6]	C	T	3.529e^-4	1	DOWNSTREAM CR45643 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7554109	2L_7554109_SNP [dm3] 2L_7554109_SNP [dm6]	A	T	3.535e^-4	1	INTRON RapGAP1
3R	14062911	3R_14062911_SNP [dm3] 3R_18237189_SNP [dm6]	T	C	3.547e^-4	1	SYNONYMOUS_CODING repo	TF binding site mE1_TFBS_chinmo
2L	581411	2L_581411_SNP [dm3] 2L_581411_SNP [dm6]	A	G	3.553e^-4	1	INTERGENIC
2L	15263599	2L_15263599_SNP [dm3] 2L_15263599_SNP [dm6]	G	A	3.554e^-4	1	SYNONYMOUS_CODING yuri UPSTREAM yuri	TF binding site mE1_TFBS_sens
2R	7058708	2R_7058708_SNP [dm3] 2R_11171203_SNP [dm6]	A	G	3.561e^-4	1	INTRON shn & 1 other
3L	10333422	3L_10333422_SNP [dm3] 3L_10340322_SNP [dm6]	T	G	3.581e^-4	1	INTERGENIC
3L	8135438	3L_8135438_SNP [dm3] 3L_8142338_SNP [dm6]	C	A	3.585e^-4	1	UTR_3_PRIME CG13676 DOWNSTREAM mus301
3R	13272779	3R_13272779_DEL [dm3] 3R_17447057_DEL [dm6]	TT	T	3.587e^-4	1	DOWNSTREAM CG5873 INTRON Eh
3R	11522720	3R_11522720_SNP [dm3] 3R_15696998_SNP [dm6]	A	G	3.589e^-4	1	UTR_3_PRIME CG5399 UPSTREAM CR45635 DOWNSTREAM CG5399
2L	5407933	2L_5407933_SNP [dm3] 2L_5407933_SNP [dm6]	T	A	3.597e^-4	1	INTRON H15	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15933738	3R_15933738_SNP [dm3] 3R_20108016_SNP [dm6]	A	G	3.607e^-4	1	UPSTREAM CG31206 INTERGENIC
3R	19299542	3R_19299542_SNP [dm3] 3R_23473820_SNP [dm6]	G	A	3.613e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
3L	17214755	3L_17214755_SNP [dm3] 3L_17221655_SNP [dm6]	T	G	3.613e^-4	1	INTRON Rbp6
2L	16370750	2L_16370750_SNP [dm3] 2L_16370750_SNP [dm6]	C	T	3.615e^-4	1	INTERGENIC
2L	3686017	2L_3686017_SNP [dm3] 2L_3686017_SNP [dm6]	G	T	3.618e^-4	1	INTRON CG34340
2L	2596876	2L_2596876_SNP [dm3] 2L_2596876_SNP [dm6]	T	A	3.625e^-4	1	INTERGENIC
2L	4383371	2L_4383371_SNP [dm3] 2L_4383371_SNP [dm6]	A	T	3.627e^-4	1	SYNONYMOUS_CODING CG3338 UPSTREAM CG17612	TF binding site mE1_TFBS_cad
3R	15921616	3R_15921616_SNP [dm3] 3R_20095894_SNP [dm6]	A	G	3.638e^-4	1	INTERGENIC
2L	20097653	2L_20097653_SNP [dm3] 2L_20097653_SNP [dm6]	C	T	3.642e^-4	1	START_GAINED Kua UTR_5_PRIME Kua UPSTREAM Kua & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_Ubx
2L	1909203	2L_1909203_SNP [dm3] 2L_1909203_SNP [dm6]	C	A	3.660e^-4	1	INTRON CG7337
2R	4960228	2R_4960228_SNP [dm3] 2R_9072723_SNP [dm6]	G	A	3.661e^-4	1	INTRON ana	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
3L	12864905	3L_12864905_SNP [dm3] 3L_12871805_SNP [dm6]	A	G	3.671e^-4	1	INTERGENIC
2L	1544004	2L_1544004_SNP [dm3] 2L_1544004_SNP [dm6]	A	G	3.687e^-4	1	INTERGENIC
2R	19982505	2R_19982505_SNP [dm3] 2R_24094982_SNP [dm6]	C	T	3.691e^-4	1	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9503886	3L_9503886_INS [dm3] 3L_9510786_INS [dm6]	T	TT	3.698e^-4	1	INTRON RpS9 EXON snoRNA:Me28S-G3253	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	8254463	2R_8254463_SNP [dm3] 2R_12366958_SNP [dm6]	C	T	3.698e^-4	1	UPSTREAM CG33012 DOWNSTREAM CR33013 INTERGENIC
3L	9508365	3L_9508365_SNP [dm3] 3L_9515265_SNP [dm6]	G	C	3.700e^-4	1	UTR_5_PRIME CG33700
3L	7434865	3L_7434865_SNP [dm3] 3L_7441765_SNP [dm6]	C	A	3.700e^-4	1	INTRON CG42458
2R	17759276	2R_17759276_SNP [dm3] 2R_21871771_SNP [dm6]	C	A	3.707e^-4	1	UPSTREAM Fili INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	19239496	3L_19239496_SNP [dm3] 3L_19246396_SNP [dm6]	G	A	3.715e^-4	1	INTERGENIC
X	18453549	X_18453549_SNP [dm3] X_18559516_SNP [dm6]	G	A	3.721e^-4	1	INTRON Bx
3L	18897364	3L_18897364_SNP [dm3] 3L_18904264_SNP [dm6]	C	T	3.726e^-4	1	SYNONYMOUS_CODING CSN1b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	18676860	3R_18676860_SNP [dm3] 3R_22851138_SNP [dm6]	G	C	3.736e^-4	1	EXON CR43846	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12988068	3L_12988068_SNP [dm3] 3L_12994968_SNP [dm6]	T	C	3.760e^-4	1	UPSTREAM CG11262 INTERGENIC
2R	4172452	2R_4172452_DEL [dm3] 2R_8284947_DEL [dm6]	AG	A	3.761e^-4	1	INTERGENIC
3L	5503474	3L_5503474_SNP [dm3] 3L_5510374_SNP [dm6]	C	T	3.780e^-4	1	SYNONYMOUS_CODING CG34342
3R	19212126	3R_19212126_SNP [dm3] 3R_23386404_SNP [dm6]	G	A	3.786e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	3337771	2L_3337771_SNP [dm3] 2L_3337771_SNP [dm6]	G	A	3.789e^-4	1	SYNONYMOUS_CODING E23	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	9798000	3R_9798000_SNP [dm3] 3R_13972278_SNP [dm6]	A	G	3.798e^-4	1	UPSTREAM rdx INTRON rdx & 1 other EXON CR43460	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12084805	X_12084805_SNP [dm3] X_12190772_SNP [dm6]	G	T	3.812e^-4	1	INTRON Ten-a
X	3246507	X_3246507_SNP [dm3] X_3352474_SNP [dm6]	T	C	3.832e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7274794	2L_7274794_SNP [dm3] 2L_7274794_SNP [dm6]	G	A	3.854e^-4	1	INTRON Wnt4
2R	8444970	2R_8444970_SNP [dm3] 2R_12557465_SNP [dm6]	T	A	3.870e^-4	1	SYNONYMOUS_CODING fra	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	4781646	2L_4781646_SNP [dm3] 2L_4781646_SNP [dm6]	T	C	3.871e^-4	1	INTRON CG15630
3R	11989930	3R_11989930_SNP [dm3] 3R_16164208_SNP [dm6]	T	C	3.871e^-4	1	INTRON CG6006
2L	5408049	2L_5408049_SNP [dm3] 2L_5408049_SNP [dm6]	A	C	3.882e^-4	1	INTRON H15	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	11413998	3R_11413998_DEL [dm3] 3R_15588276_DEL [dm6]	CCTTCCGAT	C	3.892e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sens
X	13206488	X_13206488_INS [dm3] X_13312455_INS [dm6]	T	TAT	3.898e^-4	1	INTRON IP3K2
2L	13583719	2L_13583719_SNP [dm3] 2L_13583719_SNP [dm6]	A	G	3.910e^-4	1	DOWNSTREAM CR44973 INTRON kuz
2L	6045926	2L_6045926_SNP [dm3] 2L_6045926_SNP [dm6]	G	A	3.945e^-4	1	UTR_5_PRIME ade2 UPSTREAM ade2 & 1 other DOWNSTREAM slmo & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11296046	2L_11296046_SNP [dm3] 2L_11296046_SNP [dm6]	A	G	3.946e^-4	1	INTERGENIC
3L	17269144	3L_17269144_SNP [dm3] 3L_17276044_SNP [dm6]	C	T	3.946e^-4	1	UPSTREAM CR45436 INTERGENIC
2R	10874825	2R_10874825_SNP [dm3] 2R_14987320_SNP [dm6]	G	A	3.946e^-4	1	DOWNSTREAM CG7639 INTRON pcs	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8765988	3L_8765988_SNP [dm3] 3L_8772888_SNP [dm6]	G	T	3.952e^-4	1	INTRON Fhos
3R	27284582	3R_27284582_SNP [dm3] 3R_31458860_SNP [dm6]	T	C	3.956e^-4	1	DOWNSTREAM Gprk2 & 1 other INTRON lox	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7434871	3L_7434871_SNP [dm3] 3L_7441771_SNP [dm6]	T	A	3.965e^-4	1	INTRON CG42458
2R	13004110	2R_13004110_SNP [dm3] 2R_17116605_SNP [dm6]	A	G	3.971e^-4	1	INTERGENIC
3L	12942972	3L_12942972_SNP [dm3] 3L_12949872_SNP [dm6]	A	G	3.976e^-4	1	INTERGENIC
X	12001640	X_12001640_SNP [dm3] X_12107607_SNP [dm6]	A	G	3.986e^-4	1	SYNONYMOUS_CODING CG2750 INTRON CR43960 & 1 other
2L	14927902	2L_14927902_SNP [dm3] 2L_14927902_SNP [dm6]	C	T	3.997e^-4	1	SYNONYMOUS_CODING CG3491 INTRON CG42313
3L	13679144	3L_13679144_SNP [dm3] 3L_13686044_SNP [dm6]	T	C	4.000e^-4	1	INTRON bru-3
2L	6530931	2L_6530931_SNP [dm3] 2L_6530931_SNP [dm6]	A	G	4.005e^-4	1	UPSTREAM eya INTRON eya	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	11544120	3L_11544120_SNP [dm3] 3L_11551020_SNP [dm6]	G	A	4.010e^-4	1	INTRON Mob2
3R	12727014	3R_12727014_DEL [dm3] 3R_16901292_DEL [dm6]	CGCTGCTA	C	4.018e^-4	1	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	4857813	2L_4857813_SNP [dm3] 2L_4857813_SNP [dm6]	G	A	4.020e^-4	1	INTRON pog
2L	12458305	2L_12458305_SNP [dm3] 2L_12458305_SNP [dm6]	C	T	4.027e^-4	1	INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	5967425	3L_5967425_SNP [dm3] 3L_5974325_SNP [dm6]	C	G	4.028e^-4	1	INTRON CG10479	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	12731169	3R_12731169_SNP [dm3] 3R_16905447_SNP [dm6]	T	A	4.030e^-4	1	INTRON iab-8	TF binding site mE1_TFBS_HSA
2L	11913195	2L_11913195_SNP [dm3] 2L_11913195_SNP [dm6]	C	T	4.048e^-4	1	INTRON Pde1c
2R	4953707	2R_4953707_SNP [dm3] 2R_9066202_SNP [dm6]	A	C	4.050e^-4	1	INTRON ana	regulatory region REDfly_CRMs
3L	4423405	3L_4423405_SNP [dm3] 3L_4423405_SNP [dm6]	C	G	4.052e^-4	1	INTRON CG15020
2R	15679231	2R_15679231_SNP [dm3] 2R_19791726_SNP [dm6]	A	G	4.065e^-4	1	INTERGENIC
2L	1906764	2L_1906764_SNP [dm3] 2L_1906764_SNP [dm6]	G	A	4.067e^-4	1	INTRON CG7337
2R	9263181	2R_9263181_SNP [dm3] 2R_13375676_SNP [dm6]	T	C	4.084e^-4	1	DOWNSTREAM CG10814 INTERGENIC
2L	12805724	2L_12805724_SNP [dm3] 2L_12805724_SNP [dm6]	G	T	4.090e^-4	1	INTERGENIC
3R	19830850	3R_19830850_SNP [dm3] 3R_24005128_SNP [dm6]	T	A	4.091e^-4	1	INTRON KrT95D
2L	2854861	2L_2854861_SNP [dm3] 2L_2854861_SNP [dm6]	T	C	4.098e^-4	1	START_GAINED CG3104 UTR_5_PRIME CG3104 INTRON CG3104
2R	15081705	2R_15081705_SNP [dm3] 2R_19194200_SNP [dm6]	A	G	4.106e^-4	1	INTRON hppy
3L	11337502	3L_11337502_SNP [dm3] 3L_11344402_SNP [dm6]	A	T	4.118e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	11962105	3R_11962105_SNP [dm3] 3R_16136383_SNP [dm6]	A	G	4.127e^-4	1	INTRON Sb
3L	9508364	3L_9508364_SNP [dm3] 3L_9515264_SNP [dm6]	T	C	4.166e^-4	1	UTR_5_PRIME CG33700
X	17845369	X_17845369_SNP [dm3] X_17951336_SNP [dm6]	C	G	4.184e^-4	1	INTRON Sh	TF binding site BDTNP1_TFBS_dl
X	3170062	X_3170062_INS [dm3] X_3276029_INS [dm6]	T	TTCCCTCTTTTTTTGTT...	4.195e^-4	1	INTRON dnc
X	11970769	X_11970769_SNP [dm3] X_12076736_SNP [dm6]	A	C	4.202e^-4	1	INTRON CR43960 & 1 other
2L	7799198	2L_7799198_SNP [dm3] 2L_7799198_SNP [dm6]	A	G	4.204e^-4	1	UPSTREAM r2d2 INTRON Herp	TF binding site BDTNP1_TFBS_dl
3R	12813066	3R_12813066_SNP [dm3] 3R_16987344_SNP [dm6]	G	A	4.210e^-4	1	UPSTREAM CG18622 INTRON CG18622
2R	7058656	2R_7058656_SNP [dm3] 2R_11171151_SNP [dm6]	A	T	4.211e^-4	1	INTRON shn & 1 other
2L	12723376	2L_12723376_SNP [dm3] 2L_12723376_SNP [dm6]	T	C	4.212e^-4	1	NON_SYNONYMOUS_CODING MRP	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_sens
2R	4953706	2R_4953706_SNP [dm3] 2R_9066201_SNP [dm6]	A	C	4.218e^-4	1	INTRON ana	regulatory region REDfly_CRMs
X	6134031	X_6134031_SNP [dm3] X_6239998_SNP [dm6]	T	C	4.221e^-4	1	DOWNSTREAM Rbcn-3A INTRON CG14445
3L	1913184	3L_1913184_SNP [dm3] 3L_1913184_SNP [dm6]	C	A	4.223e^-4	1	INTERGENIC
3R	21378022	3R_21378022_SNP [dm3] 3R_25552300_SNP [dm6]	A	G	4.224e^-4	1	INTRON msi
2L	6818093	2L_6818093_SNP [dm3] 2L_6818093_SNP [dm6]	G	A	4.224e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3L	18269940	3L_18269940_SNP [dm3] 3L_18276840_SNP [dm6]	T	G	4.229e^-4	1	INTERGENIC
2L	2876620	2L_2876620_DEL [dm3] 2L_2876620_DEL [dm6]	TG	T	4.251e^-4	1	DOWNSTREAM Prx6005 INTRON CG8814
3R	24758734	3R_24758734_SNP [dm3] 3R_28933012_SNP [dm6]	A	T	4.258e^-4	1	INTRON CG14521
3R	18331935	3R_18331935_SNP [dm3] 3R_22506213_SNP [dm6]	G	T	4.261e^-4	1	INTRON Octbeta1R
2R	19089585	2R_19089585_SNP [dm3] 2R_23202062_SNP [dm6]	T	A	4.264e^-4	1	INTRON CG34371	TF binding site BDTNP1_TFBS_twi
2R	12291679	2R_12291679_SNP [dm3] 2R_16404174_SNP [dm6]	A	G	4.269e^-4	1	INTRON Sema-2b
2R	4969288	2R_4969288_SNP [dm3] 2R_9081783_SNP [dm6]	G	A	4.269e^-4	1	SYNONYMOUS_CODING CG8083 UPSTREAM CNT1
2L	3583358	2L_3583358_SNP [dm3] 2L_3583358_SNP [dm6]	A	G	4.270e^-4	1	INTERGENIC
3R	19116842	3R_19116842_INS [dm3] 3R_23291120_INS [dm6]	T	TG	4.272e^-4	1	UTR_3_PRIME pnt UPSTREAM CG4434
3R	11816942	3R_11816942_SNP [dm3] 3R_15991220_SNP [dm6]	C	G	4.277e^-4	1	INTRON srp & 1 other	TF binding site mE1_TFBS_cad
2L	11435288	2L_11435288_SNP [dm3] 2L_11435288_SNP [dm6]	A	G	4.277e^-4	1	UTR_3_PRIME salm
3L	14236416	3L_14236416_SNP [dm3] 3L_14243316_SNP [dm6]	G	C	4.280e^-4	1	INTERGENIC
2R	18746417	2R_18746417_SNP [dm3] 2R_22858894_SNP [dm6]	A	G	4.281e^-4	1	UPSTREAM inaD INTERGENIC
2R	11474079	2R_11474079_SNP [dm3] 2R_15586574_SNP [dm6]	C	A	4.287e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4614479	2L_4614479_SNP [dm3] 2L_4614479_SNP [dm6]	T	C	4.291e^-4	1	UPSTREAM dp INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	9737525	3L_9737525_SNP [dm3] 3L_9744425_SNP [dm6]	A	T	4.303e^-4	1	UPSTREAM CG42268 DOWNSTREAM CR44348 INTRON CG42268	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23645751	3R_23645751_SNP [dm3] 3R_27820029_SNP [dm6]	T	A	4.306e^-4	1	INTRON CG34353
2R	10914682	2R_10914682_SNP [dm3] 2R_15027177_SNP [dm6]	G	A	4.314e^-4	1	INTRON hbs	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	9030702	3L_9030702_SNP [dm3] 3L_9037602_SNP [dm6]	T	G	4.314e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
3R	24482096	3R_24482096_SNP [dm3] 3R_28656374_SNP [dm6]	G	A	4.337e^-4	1	INTERGENIC
3L	1255460	3L_1255460_INS [dm3] 3L_1255460_INS [dm6]	A	AT	4.345e^-4	1	UPSTREAM CG9134 INTRON CG9130 & 1 other	TF binding site mE1_TFBS_chinmo
2R	9196032	2R_9196032_SNP [dm3] 2R_13308527_SNP [dm6]	A	T	4.353e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	19287513	3L_19287513_SNP [dm3] 3L_19294413_SNP [dm6]	A	G	4.369e^-4	1	UPSTREAM fal INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	15599641	2L_15599641_SNP [dm3] 2L_15599641_SNP [dm6]	G	A	4.373e^-4	1	INTERGENIC
2R	18630459	2R_18630459_SNP [dm3] 2R_22742954_SNP [dm6]	C	T	4.373e^-4	1	UTR_3_PRIME CG42260 DOWNSTREAM CG42260
X	6676530	X_6676530_SNP [dm3] X_6782497_SNP [dm6]	A	T	4.378e^-4	1	INTRON C3G
3L	18949222	3L_18949222_SNP [dm3] 3L_18956122_SNP [dm6]	C	G	4.379e^-4	1	DOWNSTREAM CG6836 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	2600201	2L_2600201_SNP [dm3] 2L_2600201_SNP [dm6]	G	A	4.380e^-4	1	UPSTREAM CR44790 DOWNSTREAM CR44789 INTERGENIC
X	12020732	X_12020732_SNP [dm3] X_12126699_SNP [dm6]	C	T	4.380e^-4	1	INTRON Ten-a
2L	14977097	2L_14977097_SNP [dm3] 2L_14977097_SNP [dm6]	G	A	4.382e^-4	1	INTRON mol
2L	18609883	2L_18609883_SNP [dm3] 2L_18609883_SNP [dm6]	C	T	4.387e^-4	1	SYNONYMOUS_CODING Atac2 DOWNSTREAM CG10333
2L	15572359	2L_15572359_SNP [dm3] 2L_15572359_SNP [dm6]	C	G	4.397e^-4	1	INTRON kek3
2R	6442337	2R_6442337_SNP [dm3] 2R_10554832_SNP [dm6]	C	G	4.397e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	12049622	3R_12049622_SNP [dm3] 3R_16223900_SNP [dm6]	G	A	4.411e^-4	1	DOWNSTREAM CR45643 INTERGENIC
3L	12981683	3L_12981683_SNP [dm3] 3L_12988583_SNP [dm6]	C	A	4.413e^-4	1	INTERGENIC
3L	5501338	3L_5501338_SNP [dm3] 3L_5508238_SNP [dm6]	G	A	4.413e^-4	1	INTRON CG34342
2L	14348815	2L_14348815_SNP [dm3] 2L_14348815_SNP [dm6]	G	A	4.415e^-4	1	UPSTREAM CR44850 & 1 other DOWNSTREAM l_2_34Fc INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Ubx
3L	5634450	3L_5634450_SNP [dm3] 3L_5641350_SNP [dm6]	G	T	4.416e^-4	1	UPSTREAM Blimp-1 INTRON Blimp-1
2R	19089561	2R_19089561_SNP [dm3] 2R_23202038_SNP [dm6]	A	T	4.418e^-4	1	INTRON CG34371	TF binding site BDTNP1_TFBS_twi
2R	17759275	2R_17759275_SNP [dm3] 2R_21871770_SNP [dm6]	G	C	4.427e^-4	1	UPSTREAM Fili INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	12727023	3R_12727023_SNP [dm3] 3R_16901301_SNP [dm6]	A	C	4.432e^-4	1	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	26955122	3R_26955122_SNP [dm3] 3R_31129400_SNP [dm6]	T	C	4.437e^-4	1	SYNONYMOUS_CODING CG15556
3R	26953941	3R_26953941_SNP [dm3] 3R_31128219_SNP [dm6]	T	C	4.459e^-4	1	SYNONYMOUS_CODING CG15556 DOWNSTREAM CG15554
2L	18398934	2L_18398934_SNP [dm3] 2L_18398934_SNP [dm6]	G	A	4.462e^-4	1	INTERGENIC
X	15152551	X_15152551_SNP [dm3] X_15258518_SNP [dm6]	T	C	4.468e^-4	1	INTERGENIC
3L	5306472	3L_5306472_SNP [dm3] 3L_5313372_SNP [dm6]	T	G	4.476e^-4	1	INTERGENIC
3R	19206526	3R_19206526_SNP [dm3] 3R_23380804_SNP [dm6]	C	T	4.491e^-4	1	SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_chinmo
2L	9032266	2L_9032266_SNP [dm3] 2L_9032266_SNP [dm6]	T	C	4.496e^-4	1	UPSTREAM CG9582 & 1 other INTERGENIC
2L	4474740	2L_4474740_SNP [dm3] 2L_4474740_SNP [dm6]	C	T	4.500e^-4	1	NON_SYNONYMOUS_CODING ine	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7003055	2L_7003055_SNP [dm3] 2L_7003055_SNP [dm6]	C	T	4.502e^-4	1	INTRON uif	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
3L	11359857	3L_11359857_SNP [dm3] 3L_11366757_SNP [dm6]	T	C	4.505e^-4	1	DOWNSTREAM CR45036 INTERGENIC	TF binding site mE1_TFBS_inv
2R	12449560	2R_12449560_SNP [dm3] 2R_16562055_SNP [dm6]	C	A	4.515e^-4	1	INTRON DAT
2L	12816257	2L_12816257_SNP [dm3] 2L_12816257_SNP [dm6]	A	G	4.517e^-4	1	DOWNSTREAM kek1 INTERGENIC
3R	13390555	3R_13390555_DEL [dm3] 3R_17564833_DEL [dm6]	TCCTAAATGCGAATA...	CAAC	4.518e^-4	1	INTRON Hmx
3L	13549720	3L_13549720_SNP [dm3] 3L_13556620_SNP [dm6]	T	A	4.533e^-4	1	INTRON bru-3
3L	13670872	3L_13670872_SNP [dm3] 3L_13677772_SNP [dm6]	A	T	4.556e^-4	1	INTRON bru-3
2R	10694767	2R_10694767_SNP [dm3] 2R_14807262_SNP [dm6]	G	A	4.556e^-4	1	UPSTREAM kn INTERGENIC	regulatory region REDfly_CRMs
2L	8369054	2L_8369054_SNP [dm3] 2L_8369054_SNP [dm6]	A	T	4.558e^-4	1	INTRON Pp2A-29B	TF binding site mE1_TFBS_cad
3R	20400259	3R_20400259_SNP [dm3] 3R_24574537_SNP [dm6]	A	T	4.562e^-4	1	INTRON CG13624
2L	4614497	2L_4614497_SNP [dm3] 2L_4614497_SNP [dm6]	C	T	4.563e^-4	1	UPSTREAM dp INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	23180794	3R_23180794_SNP [dm3] 3R_27355072_SNP [dm6]	G	A	4.567e^-4	1	INTRON CG42534
2L	14719100	2L_14719100_SNP [dm3] 2L_14719100_SNP [dm6]	G	A	4.580e^-4	1	INTERGENIC
3R	14342150	3R_14342150_SNP [dm3] 3R_18516428_SNP [dm6]	T	A	4.588e^-4	1	INTRON fru	TF binding site BDTNP1_TFBS_twi
2L	10936998	2L_10936998_SNP [dm3] 2L_10936998_SNP [dm6]	G	C	4.593e^-4	1	UPSTREAM CG14072 INTRON dpr2 & 1 other
3R	14037612	3R_14037612_SNP [dm3] 3R_18211890_SNP [dm6]	C	A	4.595e^-4	1	INTRON CG7985
3R	9132126	3R_9132126_SNP [dm3] 3R_13306404_SNP [dm6]	T	C	4.597e^-4	1	INTRON CG32473
X	5303658	X_5303658_DEL [dm3] X_5409625_DEL [dm6]	TGTAT	T	4.617e^-4	1	INTRON NAAT1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20041291	3R_20041291_INS [dm3] 3R_24215569_INS [dm6]	T	TT	4.623e^-4	1	UTR_3_PRIME CG17786 INTRON twin
2L	18386777	2L_18386777_SNP [dm3] 2L_18386777_SNP [dm6]	T	C	4.625e^-4	1	UTR_3_PRIME Fas3 INTRON Fas3
3L	13670875	3L_13670875_DEL [dm3] 3L_13677775_DEL [dm6]	ACAGAACGA	A	4.626e^-4	1	INTRON bru-3
2L	5386168	2L_5386168_SNP [dm3] 2L_5386168_SNP [dm6]	C	T	4.631e^-4	1	INTERGENIC
3L	11640795	3L_11640795_SNP [dm3] 3L_11647695_SNP [dm6]	T	C	4.632e^-4	1	SYNONYMOUS_CODING RIOK1	TF binding site mE1_TFBS_sens
2L	14548798	2L_14548798_SNP [dm3] 2L_14548798_SNP [dm6]	G	A	4.635e^-4	1	SYNONYMOUS_CODING CG4218
3L	9737596	3L_9737596_SNP [dm3] 3L_9744496_SNP [dm6]	G	A	4.654e^-4	1	UPSTREAM CG42268 DOWNSTREAM CR44348 INTRON CG42268	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11971015	X_11971015_SNP [dm3] X_12076982_SNP [dm6]	G	A	4.655e^-4	1	INTRON CR43960 & 1 other
3L	12125087	3L_12125087_SNP [dm3] 3L_12131987_SNP [dm6]	T	A	4.656e^-4	1	UPSTREAM CG11534 DOWNSTREAM Lsp2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA
X	12446675	X_12446675_SNP [dm3] X_12552642_SNP [dm6]	A	C	4.668e^-4	1	UPSTREAM Cpr11B INTRON CG43921
3L	18952059	3L_18952059_DEL [dm3] 3L_18958959_DEL [dm6]	GA	G	4.669e^-4	1	INTERGENIC
3L	18898741	3L_18898741_SNP [dm3] 3L_18905641_SNP [dm6]	G	A	4.674e^-4	1	UPSTREAM CSN1b INTRON CG6841	TF binding site mE1_TFBS_cad
2L	2876681	2L_2876681_SNP [dm3] 2L_2876681_SNP [dm6]	C	T	4.675e^-4	1	DOWNSTREAM Prx6005 INTRON CG8814
3R	14151532	3R_14151532_SNP [dm3] 3R_18325810_SNP [dm6]	A	C	4.680e^-4	1	INTRON CG31235	TF binding site mE1_TFBS_chinmo
2L	4329102	2L_4329102_SNP [dm3] 2L_4329102_SNP [dm6]	T	C	4.689e^-4	1	SYNONYMOUS_CODING CG16857	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	2151827	X_2151827_SNP [dm3] X_2257794_SNP [dm6]	C	T	4.711e^-4	1	INTRON CG3078	TF binding site mE1_TFBS_chinmo
3R	16375576	3R_16375576_SNP [dm3] 3R_20549854_SNP [dm6]	G	A	4.723e^-4	1	INTRON Stat92E	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	6396781	X_6396781_SNP [dm3] X_6502748_SNP [dm6]	A	T	4.725e^-4	1	INTRON CG42340
3L	646343	3L_646343_SNP [dm3] 3L_646343_SNP [dm6]	C	A	4.730e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	3503467	2L_3503467_SNP [dm3] 2L_3503467_SNP [dm6]	C	G	4.743e^-4	1	SYNONYMOUS_CODING tim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4560052	2L_4560052_SNP [dm3] 2L_4560052_SNP [dm6]	G	A	4.756e^-4	1	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12401819	2L_12401819_DEL [dm3] 2L_12401819_DEL [dm6]	TG	T	4.758e^-4	1	UTR_3_PRIME Pkd2
2R	9865984	2R_9865984_SNP [dm3] 2R_13978479_SNP [dm6]	C	T	4.760e^-4	1	INTRON CG6701	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4385674	3R_4385674_SNP [dm3] 3R_8559952_SNP [dm6]	A	T	4.767e^-4	1	UTR_3_PRIME pch2 DOWNSTREAM pch2
2R	10509358	2R_10509358_SNP [dm3] 2R_14621853_SNP [dm6]	A	G	4.782e^-4	1	UPSTREAM snoRNA:Me28S-C3227a & 4 others INTRON Uhg5 EXON snoRNA:Me18S-C1366	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	13670929	3L_13670929_SNP [dm3] 3L_13677829_SNP [dm6]	A	C	4.797e^-4	1	INTRON bru-3
2R	10860547	2R_10860547_SNP [dm3] 2R_14973042_SNP [dm6]	G	A	4.798e^-4	1	INTRON ckn	TF binding site BDTNP1_TFBS_twi
2R	4172401	2R_4172401_SNP [dm3] 2R_8284896_SNP [dm6]	G	A	4.802e^-4	1	INTERGENIC
2L	4781938	2L_4781938_SNP [dm3] 2L_4781938_SNP [dm6]	T	C	4.802e^-4	1	INTRON CG15630
2R	20813473	2R_20813473_SNP [dm3] 2R_24925950_SNP [dm6]	G	A	4.803e^-4	1	INTRON pain
2R	11227408	2R_11227408_SNP [dm3] 2R_15339903_SNP [dm6]	A	G	4.812e^-4	1	UPSTREAM unc-5 DOWNSTREAM Hr51 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
2R	4172520	2R_4172520_SNP [dm3] 2R_8285015_SNP [dm6]	T	A	4.823e^-4	1	INTERGENIC
3L	16629237	3L_16629237_SNP [dm3] 3L_16636137_SNP [dm6]	T	G	4.832e^-4	1	INTRON Abl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19212129	3R_19212129_SNP [dm3] 3R_23386407_SNP [dm6]	A	G	4.842e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	16629847	3L_16629847_SNP [dm3] 3L_16636747_SNP [dm6]	T	G	4.845e^-4	1	INTRON Abl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	10978081	X_10978081_SNP [dm3] X_11084048_SNP [dm6]	T	C	4.847e^-4	1	SYNONYMOUS_CODING sev	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16131196	2R_16131196_SNP [dm3] 2R_20243691_SNP [dm6]	A	G	4.850e^-4	1	SYNONYMOUS_CODING CG11208 DOWNSTREAM Efhc1.2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2R	9263123	2R_9263123_SNP [dm3] 2R_13375618_SNP [dm6]	T	G	4.852e^-4	1	DOWNSTREAM CG10814 INTERGENIC
3L	11546484	3L_11546484_SNP [dm3] 3L_11553384_SNP [dm6]	C	A	4.855e^-4	1	UPSTREAM mir-4968 & 1 other INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	20940321	2L_20940321_SNP [dm3] 2L_20940321_SNP [dm6]	C	A	4.881e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10874839	2R_10874839_SNP [dm3] 2R_14987334_SNP [dm6]	C	T	4.896e^-4	1	DOWNSTREAM CG7639 INTRON pcs	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	7685413	3R_7685413_SNP [dm3] 3R_11859691_SNP [dm6]	T	A	4.896e^-4	1	INTRON CG6959
3R	12725451	3R_12725451_SNP [dm3] 3R_16899729_SNP [dm6]	C	T	4.899e^-4	1	EXON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
3R	14154875	3R_14154875_SNP [dm3] 3R_18329153_SNP [dm6]	C	T	4.912e^-4	1	UPSTREAM CG31235 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	16629251	3L_16629251_SNP [dm3] 3L_16636151_SNP [dm6]	G	A	4.918e^-4	1	INTRON Abl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	13084778	X_13084778_SNP [dm3] X_13190745_SNP [dm6]	A	G	4.919e^-4	1	SYNONYMOUS_CODING CG12723	TF binding site mE1_TFBS_chinmo
3L	19410789	3L_19410789_SNP [dm3] 3L_19417689_SNP [dm6]	G	C	4.919e^-4	1	INTERGENIC
3R	11989896	3R_11989896_SNP [dm3] 3R_16164174_SNP [dm6]	A	C	4.923e^-4	1	INTRON CG6006
2R	18458514	2R_18458514_SNP [dm3] 2R_22571009_SNP [dm6]	T	G	4.924e^-4	1	INTRON dnr1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	22753635	3R_22753635_SNP [dm3] 3R_26927913_SNP [dm6]	G	A	4.936e^-4	1	INTRON sda
2L	11297785	2L_11297785_SNP [dm3] 2L_11297785_SNP [dm6]	G	A	4.937e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	24654262	3R_24654262_SNP [dm3] 3R_28828540_SNP [dm6]	G	T	4.944e^-4	1	INTRON WASp
2L	8443958	2L_8443958_SNP [dm3] 2L_8443958_SNP [dm6]	T	C	4.945e^-4	1	NON_SYNONYMOUS_CODING CG31897
2L	3695738	2L_3695738_SNP [dm3] 2L_3695738_SNP [dm6]	A	T	4.949e^-4	1	UPSTREAM CG43165 & 1 other DOWNSTREAM CG16712 INTERGENIC
2L	8883344	2L_8883344_SNP [dm3] 2L_8883344_SNP [dm6]	C	T	4.952e^-4	1	INTERGENIC
X	7828717	X_7828717_DEL [dm3] X_7934684_DEL [dm6]	CTAC	C	4.955e^-4	1	UPSTREAM RpS14b DOWNSTREAM RpS14a INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
X	8142477	X_8142477_SNP [dm3] X_8248444_SNP [dm6]	G	A	4.956e^-4	1	DOWNSTREAM ND75 & 1 other INTERGENIC
3L	22991771	3L_22991771_SNP [dm3] 3L_22998671_SNP [dm6]	T	C	4.958e^-4	1	UTR_5_PRIME nrm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15294140	3R_15294140_SNP [dm3] 3R_19468418_SNP [dm6]	T	A	4.962e^-4	1	INTRON Dys	TF binding site mE1_TFBS_inv
3R	8388042	3R_8388042_SNP [dm3] 3R_12562320_SNP [dm6]	T	C	4.967e^-4	1	UTR_5_PRIME Octbeta2R INTRON Octbeta2R
3L	10033422	3L_10033422_SNP [dm3] 3L_10040322_SNP [dm6]	A	G	4.969e^-4	1	INTRON dpr6	TF binding site BDTNP1_TFBS_dl
2R	12758387	2R_12758387_SNP [dm3] 2R_16870882_SNP [dm6]	C	T	4.970e^-4	1	INTRON CG6426
3R	9991833	3R_9991833_SNP [dm3] 3R_14166111_SNP [dm6]	C	T	4.971e^-4	1	UTR_3_PRIME Dop1R1
2L	3239983	2L_3239983_SNP [dm3] 2L_3239983_SNP [dm6]	G	A	4.976e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	10232271	2L_10232271_SNP [dm3] 2L_10232271_SNP [dm6]	C	A	4.979e^-4	1	UPSTREAM eEF1delta & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
2L	2600191	2L_2600191_SNP [dm3] 2L_2600191_SNP [dm6]	T	C	5.010e^-4	1	UPSTREAM CR44790 DOWNSTREAM CR44789 INTERGENIC
2R	9178739	2R_9178739_SNP [dm3] 2R_13291234_SNP [dm6]	G	T	5.012e^-4	1	INTRON Dh31-R	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4549607	2L_4549607_SNP [dm3] 2L_4549607_SNP [dm6]	G	T	5.013e^-4	1	INTRON dp
2L	1469682	2L_1469682_SNP [dm3] 2L_1469682_SNP [dm6]	C	G	5.014e^-4	1	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	12722164	2L_12722164_SNP [dm3] 2L_12722164_SNP [dm6]	A	T	5.018e^-4	1	UPSTREAM MRP & 1 other INTRON MRP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	11864710	3L_11864710_SNP [dm3] 3L_11871610_SNP [dm6]	C	G	5.019e^-4	1	UPSTREAM CG5906 INTRON CG44837	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	21300547	2L_21300547_SNP [dm3] 2L_21300547_SNP [dm6]	C	T	5.022e^-4	1	INTRON Mio
3L	1979255	3L_1979255_SNP [dm3] 3L_1979255_SNP [dm6]	G	C	5.024e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	13676707	3L_13676707_SNP [dm3] 3L_13683607_SNP [dm6]	T	C	5.028e^-4	1	INTRON bru-3
2L	12458321	2L_12458321_DEL [dm3] 2L_12458321_DEL [dm6]	GTAAATTTAGCACTGCAATT...	CCATTGCAATCCAGACTAAC...	5.038e^-4	1	INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	12711450	3R_12711450_SNP [dm3] 3R_16885728_SNP [dm6]	G	A	5.047e^-4	1	INTRON iab-8	TF binding site BDTNP1_TFBS_dl
3L	1063371	3L_1063371_SNP [dm3] 3L_1063371_SNP [dm6]	T	C	5.056e^-4	1	INTRON bab1
3R	6298292	3R_6298292_SNP [dm3] 3R_10472570_SNP [dm6]	A	C	5.057e^-4	1	INTERGENIC
3R	402340	3R_402340_SNP [dm3] 3R_4576618_SNP [dm6]	A	G	5.075e^-4	1	INTERGENIC	transposable element FlyBase
2L	2876684	2L_2876684_SNP [dm3] 2L_2876684_SNP [dm6]	G	T	5.083e^-4	1	DOWNSTREAM Prx6005 INTRON CG8814
3L	10218023	3L_10218023_SNP [dm3] 3L_10224923_SNP [dm6]	C	G	5.084e^-4	1	SYNONYMOUS_CODING scramb1	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	19213165	3R_19213165_SNP [dm3] 3R_23387443_SNP [dm6]	T	A	5.090e^-4	1	DOWNSTREAM CG31515 INTERGENIC
2R	10793758	2R_10793758_SNP [dm3] 2R_14906253_SNP [dm6]	A	T	5.091e^-4	1	UPSTREAM CG10249 INTRON CG10249
3R	21744756	3R_21744756_SNP [dm3] 3R_25919034_SNP [dm6]	G	A	5.092e^-4	1	DOWNSTREAM CG42235 INTRON CG42235
3R	23616283	3R_23616283_SNP [dm3] 3R_27790561_SNP [dm6]	A	C	5.109e^-4	1	INTRON CG34353
3R	19212078	3R_19212078_SNP [dm3] 3R_23386356_SNP [dm6]	T	C	5.109e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	12020259	X_12020259_SNP [dm3] X_12126226_SNP [dm6]	G	T	5.110e^-4	1	INTRON Ten-a
2R	6596633	2R_6596633_SNP [dm3] 2R_10709128_SNP [dm6]	C	T	5.111e^-4	1	SYNONYMOUS_CODING stan	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	5501334	3L_5501334_SNP [dm3] 3L_5508234_SNP [dm6]	A	G	5.117e^-4	1	INTRON CG34342
2R	7352314	2R_7352314_SNP [dm3] 2R_11464809_SNP [dm6]	C	T	5.124e^-4	1	UTR_3_PRIME E_Pc_ DOWNSTREAM E_Pc_
3L	1631927	3L_1631927_INS [dm3] 3L_1631927_INS [dm6]	T	TTT	5.126e^-4	1	UTR_3_PRIME nSyb DOWNSTREAM nSyb
3R	3473014	3R_3473014_SNP [dm3] 3R_7647292_SNP [dm6]	C	T	5.126e^-4	1	INTERGENIC
3R	9132117	3R_9132117_SNP [dm3] 3R_13306395_SNP [dm6]	C	T	5.135e^-4	1	INTRON CG32473
X	19706199	X_19706199_SNP [dm3] X_19812166_SNP [dm6]	A	G	5.137e^-4	1	UPSTREAM skpD INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	11447743	2L_11447743_SNP [dm3] 2L_11447743_SNP [dm6]	C	T	5.160e^-4	1	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	6592517	2R_6592517_SNP [dm3] 2R_10705012_SNP [dm6]	G	C	5.174e^-4	1	UPSTREAM stan INTRON stan
3R	6298290	3R_6298290_SNP [dm3] 3R_10472568_SNP [dm6]	T	A	5.174e^-4	1	INTERGENIC
X	10285658	X_10285658_SNP [dm3] X_10391625_SNP [dm6]	C	T	5.175e^-4	1	INTRON flw
3R	10710960	3R_10710960_SNP [dm3] 3R_14885238_SNP [dm6]	T	C	5.183e^-4	1	SYNONYMOUS_CODING Rrp6	TF binding site BDTNP1_TFBS_Med mE1_TFBS_sens
3R	26598041	3R_26598041_SNP [dm3] 3R_30772319_SNP [dm6]	A	G	5.212e^-4	1	INTRON zfh1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	5103603	2L_5103603_INS [dm3] 2L_5103603_INS [dm6]	T	TT	5.215e^-4	1	SPLICE_SITE_REGION Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad
2L	14977101	2L_14977101_SNP [dm3] 2L_14977101_SNP [dm6]	C	T	5.234e^-4	1	INTRON mol
X	13004314	X_13004314_SNP [dm3] X_13110281_SNP [dm6]	T	C	5.235e^-4	1	INTRON CG43313	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	13875230	2L_13875230_SNP [dm3] 2L_13875230_SNP [dm6]	G	A	5.250e^-4	1	INTRON CenG1A
2L	15572326	2L_15572326_SNP [dm3] 2L_15572326_SNP [dm6]	G	A	5.260e^-4	1	INTRON kek3
3L	13675706	3L_13675706_DEL [dm3] 3L_13682606_DEL [dm6]	AA	A	5.265e^-4	1	INTRON bru-3
3L	24223913	3L_24223913_SNP [dm3] 3L_24230813_SNP [dm6]	T	G	5.268e^-4	1	INTRON Snap25
2L	3420210	2L_3420210_SNP [dm3] 2L_3420210_SNP [dm6]	G	A	5.273e^-4	1	INTRON pgant2
3L	3044388	3L_3044388_SNP [dm3] 3L_3044388_SNP [dm6]	A	G	5.274e^-4	1	UTR_3_PRIME scramb2 DOWNSTREAM Jafrac2	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	18948969	3L_18948969_SNP [dm3] 3L_18955869_SNP [dm6]	G	A	5.277e^-4	1	DOWNSTREAM CG6836 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	13902305	3L_13902305_SNP [dm3] 3L_13909205_SNP [dm6]	T	G	5.282e^-4	1	INTRON Rgl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	18605134	2L_18605134_SNP [dm3] 2L_18605134_SNP [dm6]	T	A	5.284e^-4	1	START_GAINED CG10413 UTR_5_PRIME CG10413 UPSTREAM CG31789 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18605137	2L_18605137_INS [dm3] 2L_18605137_INS [dm6]	C	CAAT	5.284e^-4	1	UTR_5_PRIME CG10413 UPSTREAM CG31789 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12001645	X_12001645_SNP [dm3] X_12107612_SNP [dm6]	A	G	5.285e^-4	1	NON_SYNONYMOUS_CODING CG2750 INTRON CR43960 & 1 other
2R	10874833	2R_10874833_SNP [dm3] 2R_14987328_SNP [dm6]	A	C	5.289e^-4	1	DOWNSTREAM CG7639 INTRON pcs	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	10140481	3R_10140481_SNP [dm3] 3R_14314759_SNP [dm6]	G	T	5.291e^-4	1	UPSTREAM Crz DOWNSTREAM CG31321 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24465442	3R_24465442_SNP [dm3] 3R_28639720_SNP [dm6]	G	A	5.292e^-4	1	DOWNSTREAM CG9988 INTERGENIC
2L	13874993	2L_13874993_SNP [dm3] 2L_13874993_SNP [dm6]	T	G	5.296e^-4	1	INTRON CenG1A
3L	1591434	3L_1591434_SNP [dm3] 3L_1591434_SNP [dm6]	C	A	5.297e^-4	1	INTRON CG13917
2R	6443931	2R_6443931_SNP [dm3] 2R_10556426_SNP [dm6]	G	C	5.298e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2R	10794364	2R_10794364_SNP [dm3] 2R_14906859_SNP [dm6]	G	A	5.301e^-4	1	UPSTREAM CG10249 INTRON CG10249
3L	3842082	3L_3842082_SNP [dm3] 3L_3842082_SNP [dm6]	C	G	5.302e^-4	1	UTR_3_PRIME enc DOWNSTREAM enc
2L	2787487	2L_2787487_SNP [dm3] 2L_2787487_SNP [dm6]	G	A	5.307e^-4	1	INTRON Syt1
3R	26194839	3R_26194839_SNP [dm3] 3R_30369117_SNP [dm6]	G	A	5.309e^-4	1	UTR_3_PRIME hdc
X	12020810	X_12020810_SNP [dm3] X_12126777_SNP [dm6]	C	T	5.311e^-4	1	INTRON Ten-a
3R	7114317	3R_7114317_SNP [dm3] 3R_11288595_SNP [dm6]	G	A	5.318e^-4	1	INTRON CR31386
3R	2988944	3R_2988944_SNP [dm3] 3R_7163222_SNP [dm6]	C	G	5.318e^-4	1	INTRON sas	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	7413114	3L_7413114_SNP [dm3] 3L_7420014_SNP [dm6]	C	A	5.322e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16630148	3L_16630148_SNP [dm3] 3L_16637048_SNP [dm6]	A	T	5.324e^-4	1	INTRON Abl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12759503	2R_12759503_SNP [dm3] 2R_16871998_SNP [dm6]	A	T	5.328e^-4	1	UPSTREAM CG6421 DOWNSTREAM CG6426 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	11913162	2L_11913162_SNP [dm3] 2L_11913162_SNP [dm6]	T	C	5.329e^-4	1	INTRON Pde1c
3L	13245310	3L_13245310_SNP [dm3] 3L_13252210_SNP [dm6]	A	G	5.331e^-4	1	INTRON caps
2L	4140587	2L_4140587_SNP [dm3] 2L_4140587_SNP [dm6]	G	A	5.336e^-4	1	INTERGENIC
2R	12758671	2R_12758671_INS [dm3] 2R_16871166_INS [dm6]	T	TC	5.341e^-4	1	INTRON CG6426	TF binding site mE1_TFBS_cad
2R	15679218	2R_15679218_SNP [dm3] 2R_19791713_SNP [dm6]	A	G	5.342e^-4	1	INTERGENIC
2L	1906854	2L_1906854_SNP [dm3] 2L_1906854_SNP [dm6]	C	A	5.344e^-4	1	INTRON CG7337
2R	10518231	2R_10518231_SNP [dm3] 2R_14630726_SNP [dm6]	C	T	5.348e^-4	1	SYNONYMOUS_CODING CG10131
3L	9535576	3L_9535576_SNP [dm3] 3L_9542476_SNP [dm6]	A	G	5.348e^-4	1	SYNONYMOUS_CODING Ir67a
3R	11522755	3R_11522755_SNP [dm3] 3R_15697033_SNP [dm6]	C	A	5.349e^-4	1	UTR_3_PRIME CG5399 UPSTREAM CR45635 DOWNSTREAM CG5399
3L	14344669	3L_14344669_SNP [dm3] 3L_14351569_SNP [dm6]	A	G	5.360e^-4	1	INTRON fz
3L	13670889	3L_13670889_DEL [dm3] 3L_13677789_DEL [dm6]	AGGATTGGAAA...	CC	5.360e^-4	1	INTRON bru-3
3L	13670911	3L_13670911_DEL [dm3] 3L_13677811_DEL [dm6]	AATGGAGGAGTTAG...	A	5.360e^-4	1	INTRON bru-3
3R	12729994	3R_12729994_SNP [dm3] 3R_16904272_SNP [dm6]	G	A	5.361e^-4	1	INTRON iab-8
X	12020356	X_12020356_SNP [dm3] X_12126323_SNP [dm6]	C	T	5.365e^-4	1	INTRON Ten-a
3L	10047295	3L_10047295_SNP [dm3] 3L_10054195_SNP [dm6]	T	C	5.373e^-4	1	INTRON dpr6
3R	12736352	3R_12736352_SNP [dm3] 3R_16910630_SNP [dm6]	T	G	5.396e^-4	1	INTRON iab-8	TF binding site BDTNP1_TFBS_dl
2L	13763184	2L_13763184_SNP [dm3] 2L_13763184_SNP [dm6]	A	G	5.401e^-4	1	INTRON TM9SF4
3R	12049646	3R_12049646_INS [dm3] 3R_16223924_INS [dm6]	T	TT	5.403e^-4	1	DOWNSTREAM CR45643 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10648706	3L_10648706_SNP [dm3] 3L_10655606_SNP [dm6]	T	A	5.410e^-4	1	INTRON CG32066
3R	15925365	3R_15925365_DEL [dm3] 3R_20099643_DEL [dm6]	AA	A	5.413e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	16539204	2R_16539204_SNP [dm3] 2R_20651699_SNP [dm6]	G	A	5.415e^-4	1	DOWNSTREAM CG16799 INTRON Lrt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5971572	2R_5971572_SNP [dm3] 2R_10084067_SNP [dm6]	A	T	5.419e^-4	1	UTR_3_PRIME egr
2L	7554047	2L_7554047_SNP [dm3] 2L_7554047_SNP [dm6]	T	A	5.420e^-4	1	INTRON RapGAP1
3R	17730486	3R_17730486_SNP [dm3] 3R_21904764_SNP [dm6]	C	A	5.424e^-4	1	INTRON CG6678
2L	10353142	2L_10353142_SNP [dm3] 2L_10353142_SNP [dm6]	A	C	5.426e^-4	1	INTRON CG34367	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2L	18605144	2L_18605144_DEL [dm3] 2L_18605144_DEL [dm6]	CGG	T	5.426e^-4	1	UTR_5_PRIME CG10413 UPSTREAM CG31789 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11640834	3L_11640834_SNP [dm3] 3L_11647734_SNP [dm6]	C	T	5.427e^-4	1	SYNONYMOUS_CODING RIOK1	TF binding site mE1_TFBS_sens
3R	419782	3R_419782_SNP [dm3] 3R_4594060_SNP [dm6]	A	T	5.430e^-4	1	INTERGENIC	transposable element FlyBase
3R	16376485	3R_16376485_SNP [dm3] 3R_20550763_SNP [dm6]	C	A	5.434e^-4	1	START_GAINED Stat92E UTR_5_PRIME Stat92E INTRON Stat92E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
X	11105087	X_11105087_DEL [dm3] X_11211054_DEL [dm6]	CC	C	5.435e^-4	1	INTERGENIC
3R	18676845	3R_18676845_SNP [dm3] 3R_22851123_SNP [dm6]	A	G	5.452e^-4	1	EXON CR43846	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7572546	2L_7572546_SNP [dm3] 2L_7572546_SNP [dm6]	A	T	5.453e^-4	1	INTRON RapGAP1
2L	7572555	2L_7572555_SNP [dm3] 2L_7572555_SNP [dm6]	A	T	5.453e^-4	1	INTRON RapGAP1
2L	14711865	2L_14711865_SNP [dm3] 2L_14711865_SNP [dm6]	T	A	5.469e^-4	1	UPSTREAM CG15282 INTERGENIC
3R	10466951	3R_10466951_SNP [dm3] 3R_14641229_SNP [dm6]	G	A	5.474e^-4	1	NON_SYNONYMOUS_CODING Cad88C INTRON CG7886
3R	11413947	3R_11413947_SNP [dm3] 3R_15588225_SNP [dm6]	C	T	5.475e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sens
2R	16790580	2R_16790580_SNP [dm3] 2R_20903075_SNP [dm6]	G	A	5.475e^-4	1	UTR_5_PRIME otp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	12642671	2L_12642671_SNP [dm3] 2L_12642671_SNP [dm6]	T	C	5.480e^-4	1	INTRON Ref2
3L	7173888	3L_7173888_INS [dm3] 3L_7180788_INS [dm6]	A	ATACTACACTAGAGT...	5.488e^-4	1	INTRON Dscam2	TF binding site mE1_TFBS_inv
3L	5907409	3L_5907409_SNP [dm3] 3L_5914309_SNP [dm6]	T	A	5.509e^-4	1	INTRON CG13288
2L	20099059	2L_20099059_SNP [dm3] 2L_20099059_SNP [dm6]	C	G	5.510e^-4	1	INTRON Kua	TF binding site BDTNP1_TFBS_dl
3L	9084009	3L_9084009_SNP [dm3] 3L_9090909_SNP [dm6]	G	A	5.515e^-4	1	SYNONYMOUS_CODING Tequila	TF binding site mE1_TFBS_cad
2R	8432310	2R_8432310_SNP [dm3] 2R_12544805_SNP [dm6]	G	A	5.518e^-4	1	UPSTREAM CG33752 INTRON fra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7572533	2L_7572533_SNP [dm3] 2L_7572533_SNP [dm6]	G	A	5.521e^-4	1	INTRON RapGAP1
3L	20709370	3L_20709370_SNP [dm3] 3L_20716270_SNP [dm6]	G	T	5.538e^-4	1	UTR_3_PRIME cmpy INTRON cmpy	TF binding site BDTNP1_TFBS_twi
3L	14835252	3L_14835252_SNP [dm3] 3L_14842152_SNP [dm6]	C	T	5.541e^-4	1	INTRON CG17839
2R	19791841	2R_19791841_SNP [dm3] 2R_23904318_SNP [dm6]	C	T	5.544e^-4	1	SYNONYMOUS_CODING CG13562 DOWNSTREAM Lpt & 1 other
X	2486298	X_2486298_SNP [dm3] X_2592265_SNP [dm6]	T	C	5.551e^-4	1	UTR_5_PRIME egh INTRON egh
2L	2542677	2L_2542677_SNP [dm3] 2L_2542677_SNP [dm6]	A	T	5.551e^-4	1	INTERGENIC
2L	6035695	2L_6035695_SNP [dm3] 2L_6035695_SNP [dm6]	T	G	5.558e^-4	1	SYNONYMOUS_CODING mtm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	10032895	3L_10032895_SNP [dm3] 3L_10039795_SNP [dm6]	G	A	5.572e^-4	1	INTRON dpr6	TF binding site BDTNP1_TFBS_dl
3R	27284571	3R_27284571_SNP [dm3] 3R_31458849_SNP [dm6]	T	C	5.572e^-4	1	DOWNSTREAM Gprk2 & 1 other INTRON lox	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	17183969	3L_17183969_SNP [dm3] 3L_17190869_SNP [dm6]	T	C	5.574e^-4	1	INTRON Rbp6
3R	3482621	3R_3482621_SNP [dm3] 3R_7656899_SNP [dm6]	C	G	5.583e^-4	1	INTERGENIC
X	6418879	X_6418879_SNP [dm3] X_6524846_SNP [dm6]	C	A	5.603e^-4	1	UPSTREAM CG42340 INTRON CG3918	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	6418882	X_6418882_SNP [dm3] X_6524849_SNP [dm6]	A	T	5.603e^-4	1	UPSTREAM CG42340 INTRON CG3918	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11883246	3L_11883246_SNP [dm3] 3L_11890146_SNP [dm6]	A	T	5.615e^-4	1	INTRON CG44837
2L	3121286	2L_3121286_SNP [dm3] 2L_3121286_SNP [dm6]	T	G	5.626e^-4	1	INTRON toc
2L	15328796	2L_15328796_SNP [dm3] 2L_15328796_SNP [dm6]	T	C	5.633e^-4	1	INTERGENIC
X	5870323	X_5870323_SNP [dm3] X_5976290_SNP [dm6]	T	C	5.634e^-4	1	INTRON Grip
2L	9937613	2L_9937613_SNP [dm3] 2L_9937613_SNP [dm6]	C	T	5.657e^-4	1	DOWNSTREAM Apf INTRON CG31712 EXON CR45007	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
X	4143799	X_4143799_SNP [dm3] X_4249766_SNP [dm6]	A	C	5.660e^-4	1	INTERGENIC
2R	18722729	2R_18722729_SNP [dm3] 2R_22835206_SNP [dm6]	A	G	5.673e^-4	1	SYNONYMOUS_CODING CG12490 DOWNSTREAM CG30265
3R	13417752	3R_13417752_SNP [dm3] 3R_17592030_SNP [dm6]	T	C	5.675e^-4	1	INTERGENIC
2L	13584051	2L_13584051_SNP [dm3] 2L_13584051_SNP [dm6]	C	T	5.687e^-4	1	INTRON kuz
3R	402578	3R_402578_SNP [dm3] 3R_4576856_SNP [dm6]	G	A	5.698e^-4	1	INTERGENIC	transposable element FlyBase
3R	18499337	3R_18499337_SNP [dm3] 3R_22673615_SNP [dm6]	A	G	5.699e^-4	1	UPSTREAM CG45058 INTRON CG45058	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
X	3147713	X_3147713_SNP [dm3] X_3253680_SNP [dm6]	A	C	5.699e^-4	1	INTRON dnc
3L	10968060	3L_10968060_SNP [dm3] 3L_10974960_SNP [dm6]	T	A	5.704e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	16293998	2L_16293998_DEL [dm3] 2L_16293998_DEL [dm6]	AAACATTTCTTCA...	A	5.709e^-4	1	UPSTREAM CG13258 & 2 others INTERGENIC
3L	4302670	3L_4302670_SNP [dm3] 3L_4302670_SNP [dm6]	C	G	5.716e^-4	1	INTRON dyl
2L	581403	2L_581403_SNP [dm3] 2L_581403_SNP [dm6]	T	G	5.717e^-4	1	INTERGENIC
3L	19212391	3L_19212391_SNP [dm3] 3L_19219291_SNP [dm6]	T	C	5.732e^-4	1	INTRON fz2
3R	16167421	3R_16167421_SNP [dm3] 3R_20341699_SNP [dm6]	A	G	5.732e^-4	1	INTRON Ir92a
X	19550383	X_19550383_SNP [dm3] X_19656350_SNP [dm6]	C	T	5.739e^-4	1	SYNONYMOUS_CODING CG14215	TF binding site mE1_TFBS_cad
2R	12540590	2R_12540590_INS [dm3] 2R_16653085_INS [dm6]	A	AT	5.744e^-4	1	UPSTREAM Amyrel DOWNSTREAM Nach INTERGENIC
3R	402410	3R_402410_SNP [dm3] 3R_4576688_SNP [dm6]	T	G	5.752e^-4	1	INTERGENIC	transposable element FlyBase
3L	11545540	3L_11545540_SNP [dm3] 3L_11552440_SNP [dm6]	C	T	5.757e^-4	1	DOWNSTREAM mir-4968 INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	12731090	3R_12731090_DEL [dm3] 3R_16905368_DEL [dm6]	GGG	G	5.762e^-4	1	INTRON iab-8	TF binding site mE1_TFBS_HSA
X	6395117	X_6395117_SNP [dm3] X_6501084_SNP [dm6]	T	G	5.765e^-4	1	INTRON CG42340
2L	1007167	2L_1007167_SNP [dm3] 2L_1007167_SNP [dm6]	C	T	5.771e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	10654625	3L_10654625_SNP [dm3] 3L_10661525_SNP [dm6]	A	T	5.774e^-4	1	UTR_5_PRIME CG8003 UPSTREAM CG32066	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	13031124	2L_13031124_SNP [dm3] 2L_13031124_SNP [dm6]	C	T	5.776e^-4	1	SYNONYMOUS_CODING CG9932	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	1591200	3L_1591200_SNP [dm3] 3L_1591200_SNP [dm6]	G	A	5.782e^-4	1	INTRON CG13917
2L	7575683	2L_7575683_SNP [dm3] 2L_7575683_SNP [dm6]	C	T	5.785e^-4	1	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7715892	2L_7715892_SNP [dm3] 2L_7715892_SNP [dm6]	C	T	5.786e^-4	1	SYNONYMOUS_CODING CG33296	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	20389016	3R_20389016_SNP [dm3] 3R_24563294_SNP [dm6]	A	T	5.795e^-4	1	INTRON CG13624
2R	16130647	2R_16130647_SNP [dm3] 2R_20243142_SNP [dm6]	C	T	5.800e^-4	1	DOWNSTREAM Efhc1.2 INTRON CG11208	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9937637	2L_9937637_SNP [dm3] 2L_9937637_SNP [dm6]	C	A	5.804e^-4	1	DOWNSTREAM Apf INTRON CG31712 EXON CR45007	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	12988188	3L_12988188_SNP [dm3] 3L_12995088_SNP [dm6]	A	G	5.804e^-4	1	UPSTREAM CG11262 INTERGENIC
3R	3467147	3R_3467147_SNP [dm3] 3R_7641425_SNP [dm6]	C	A	5.809e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad transposable element FlyBase
2R	16130821	2R_16130821_SNP [dm3] 2R_20243316_SNP [dm6]	A	G	5.827e^-4	1	SYNONYMOUS_CODING CG11208 DOWNSTREAM Efhc1.2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	10815720	3L_10815720_SNP [dm3] 3L_10822620_SNP [dm6]	C	T	5.838e^-4	1	INTERGENIC
3L	18759616	3L_18759616_SNP [dm3] 3L_18766516_SNP [dm6]	C	T	5.843e^-4	1	UPSTREAM ftz-f1 INTRON ftz-f1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	21347190	3R_21347190_SNP [dm3] 3R_25521468_SNP [dm6]	C	G	5.855e^-4	1	INTRON msi
2R	4993613	2R_4993613_SNP [dm3] 2R_9106108_SNP [dm6]	G	A	5.857e^-4	1	UTR_3_PRIME Vang
2R	10860499	2R_10860499_SNP [dm3] 2R_14972994_SNP [dm6]	C	A	5.865e^-4	1	INTRON ckn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14226113	3L_14226113_SNP [dm3] 3L_14233013_SNP [dm6]	C	T	5.878e^-4	1	UTR_3_PRIME nuf UPSTREAM CG7924 DOWNSTREAM nuf
3L	18726539	3L_18726539_SNP [dm3] 3L_18733439_SNP [dm6]	G	A	5.889e^-4	1	INTERGENIC
3R	10029922	3R_10029922_SNP [dm3] 3R_14204200_SNP [dm6]	C	T	5.897e^-4	1	INTRON Dop1R1
2L	5103687	2L_5103687_SNP [dm3] 2L_5103687_SNP [dm6]	T	G	5.909e^-4	1	INTRON Msp300
2R	8365437	2R_8365437_SNP [dm3] 2R_12477932_SNP [dm6]	A	G	5.911e^-4	1	INTRON Dh44-R2
2L	1007166	2L_1007166_SNP [dm3] 2L_1007166_SNP [dm6]	G	C	5.913e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2L	6615052	2L_6615052_SNP [dm3] 2L_6615052_SNP [dm6]	A	T	5.916e^-4	1	INTRON CG11050
3L	13543367	3L_13543367_SNP [dm3] 3L_13550267_SNP [dm6]	G	A	5.921e^-4	1	INTRON bru-3
2L	10353210	2L_10353210_SNP [dm3] 2L_10353210_SNP [dm6]	C	T	5.925e^-4	1	INTRON CG34367	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3L	10032893	3L_10032893_SNP [dm3] 3L_10039793_SNP [dm6]	C	A	5.926e^-4	1	INTRON dpr6	TF binding site BDTNP1_TFBS_dl
2R	16060431	2R_16060431_SNP [dm3] 2R_20172926_SNP [dm6]	A	G	5.931e^-4	1	INTERGENIC
3R	11979761	3R_11979761_SNP [dm3] 3R_16154039_SNP [dm6]	A	C	5.932e^-4	1	UPSTREAM CG6006 INTERGENIC
3L	11547448	3L_11547448_SNP [dm3] 3L_11554348_SNP [dm6]	C	A	5.932e^-4	1	INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	18605131	2L_18605131_SNP [dm3] 2L_18605131_SNP [dm6]	C	T	5.933e^-4	1	UTR_5_PRIME CG10413 UPSTREAM CG31789 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9419296	2R_9419296_SNP [dm3] 2R_13531791_SNP [dm6]	T	C	5.935e^-4	1	INTRON Vmat
3L	18078271	3L_18078271_SNP [dm3] 3L_18085171_SNP [dm6]	C	T	5.947e^-4	1	DOWNSTREAM CR32194 EXON CR43253
2L	581351	2L_581351_SNP [dm3] 2L_581351_SNP [dm6]	T	C	5.949e^-4	1	INTERGENIC
3R	12731119	3R_12731119_SNP [dm3] 3R_16905397_SNP [dm6]	G	C	5.955e^-4	1	INTRON iab-8	TF binding site mE1_TFBS_HSA
3L	18897361	3L_18897361_SNP [dm3] 3L_18904261_SNP [dm6]	A	G	5.963e^-4	1	SYNONYMOUS_CODING CSN1b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	15679200	2R_15679200_SNP [dm3] 2R_19791695_SNP [dm6]	G	T	5.964e^-4	1	INTERGENIC

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.070e^-2)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.08731

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	4.8884	0.027

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1339 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	1007191	2R_1007191_SNP [dm3] 2R_5119686_SNP [dm6]	C	T	6.589e^-7	1	INTRON gus
X	22240957	X_22240957_SNP [dm3] X_22839121_SNP [dm6]	A	C	2.124e^-6	1	INTRON fog & 1 other
3L	10943167	3L_10943167_SNP [dm3] 3L_10950067_SNP [dm6]	T	G	2.294e^-6	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	22236222	X_22236222_SNP [dm3] X_22834386_SNP [dm6]	A	G	3.153e^-6	1	UPSTREAM mir-2491 INTRON fog & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2L	1935728	2L_1935728_SNP [dm3] 2L_1935728_SNP [dm6]	T	A	4.430e^-6	1	INTRON CG7337	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1935747	2L_1935747_SNP [dm3] 2L_1935747_SNP [dm6]	T	C	4.509e^-6	1	SYNONYMOUS_CODING CG7337	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	15320567	X_15320567_SNP [dm3] X_15426534_SNP [dm6]	T	G	4.805e^-6	1	INTRON Cngl
3L	11065924	3L_11065924_SNP [dm3] 3L_11072824_SNP [dm6]	C	A	5.324e^-6	1	SYNONYMOUS_CODING Mocs1 UTR_3_PRIME Mocs1 DOWNSTREAM l_3_01239	TF binding site mE1_TFBS_sens
X	22242039	X_22242039_SNP [dm3] X_22840203_SNP [dm6]	A	T	6.509e^-6	1	INTRON fog & 1 other
3R	10743641	3R_10743641_SNP [dm3] 3R_14917919_SNP [dm6]	G	A	8.164e^-6	1	UPSTREAM Sdr INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	16660640	2R_16660640_SNP [dm3] 2R_20773135_SNP [dm6]	G	T	1.082e^-5	1	UPSTREAM CG13443 INTERGENIC
3R	9530292	3R_9530292_SNP [dm3] 3R_13704570_SNP [dm6]	G	A	1.092e^-5	1	SYNONYMOUS_CODING Adgf-D
2R	993500	2R_993500_SNP [dm3] 2R_5105995_SNP [dm6]	T	C	1.102e^-5	1	INTERGENIC	TF binding site mE1_TFBS_cad transposable element FlyBase
2R	1016061	2R_1016061_SNP [dm3] 2R_5128556_SNP [dm6]	C	A	1.140e^-5	1	UPSTREAM gus INTRON CR43256	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn
2L	2589409	2L_2589409_SNP [dm3] 2L_2589409_SNP [dm6]	A	T	1.230e^-5	1	INTERGENIC
3L	13823737	3L_13823737_SNP [dm3] 3L_13830637_SNP [dm6]	G	A	1.239e^-5	1	INTERGENIC
3L	10738870	3L_10738870_SNP [dm3] 3L_10745770_SNP [dm6]	G	A	1.244e^-5	1	INTERGENIC
3L	10706516	3L_10706516_SNP [dm3] 3L_10713416_SNP [dm6]	G	A	1.273e^-5	1	INTERGENIC
3L	13823742	3L_13823742_INS [dm3] 3L_13830642_INS [dm6]	A	AAGGG	1.474e^-5	1	INTERGENIC
3R	10743659	3R_10743659_SNP [dm3] 3R_14917937_SNP [dm6]	G	A	1.562e^-5	1	UPSTREAM Sdr INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	1038803	2R_1038803_SNP [dm3] 2R_5151298_SNP [dm6]	A	T	1.602e^-5	1	INTRON Atf6
2R	1042008	2R_1042008_SNP [dm3] 2R_5154503_SNP [dm6]	G	T	1.712e^-5	1	UTR_3_PRIME Atf6 DOWNSTREAM Atf6	transposable element FlyBase
2R	1039846	2R_1039846_INS [dm3] 2R_5152341_INS [dm6]	A	AA	1.782e^-5	1	INTRON Atf6	transposable element FlyBase
3R	10743566	3R_10743566_SNP [dm3] 3R_14917844_SNP [dm6]	A	C	2.271e^-5	1	UPSTREAM Sdr INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	6103096	3L_6103096_SNP [dm3] 3L_6109996_SNP [dm6]	A	G	2.296e^-5	1	INTRON Ets65A	TF binding site mE1_TFBS_cad
3L	10943127	3L_10943127_SNP [dm3] 3L_10950027_SNP [dm6]	T	C	2.473e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1016218	2R_1016218_SNP [dm3] 2R_5128713_SNP [dm6]	A	T	2.474e^-5	1	UPSTREAM gus INTRON CR43256	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10893021	3R_10893021_SNP [dm3] 3R_15067299_SNP [dm6]	G	A	2.480e^-5	1	INTRON dpr9
2L	12633558	2L_12633558_SNP [dm3] 2L_12633558_SNP [dm6]	A	T	2.509e^-5	1	INTRON Ref2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3R	10743707	3R_10743707_SNP [dm3] 3R_14917985_SNP [dm6]	A	C	2.647e^-5	1	UPSTREAM Sdr INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	993213	2R_993213_SNP [dm3] 2R_5105708_SNP [dm6]	A	C	2.722e^-5	1	INTERGENIC	TF binding site mE1_TFBS_cad transposable element FlyBase
2R	991930	2R_991930_SNP [dm3] 2R_5104425_SNP [dm6]	G	T	2.762e^-5	1	INTERGENIC	transposable element FlyBase
3L	10943177	3L_10943177_SNP [dm3] 3L_10950077_SNP [dm6]	C	A	2.782e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1469141	3L_1469141_SNP [dm3] 3L_1469141_SNP [dm6]	A	G	2.871e^-5	1	DOWNSTREAM rho INTRON Ptp61F
3L	7906528	3L_7906528_SNP [dm3] 3L_7913428_SNP [dm6]	G	A	2.962e^-5	1	SYNONYMOUS_CODING CG8281 DOWNSTREAM CG8111	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	16508299	3R_16508299_SNP [dm3] 3R_20682577_SNP [dm6]	A	T	3.283e^-5	1	INTERGENIC
3R	18850728	3R_18850728_SNP [dm3] 3R_23025006_SNP [dm6]	G	T	3.427e^-5	1	SYNONYMOUS_CODING lmd UPSTREAM lmd	TF binding site mE1_TFBS_cad
3L	13823735	3L_13823735_SNP [dm3] 3L_13830635_SNP [dm6]	A	T	3.612e^-5	1	INTERGENIC
3R	10743654	3R_10743654_SNP [dm3] 3R_14917932_SNP [dm6]	G	T	3.810e^-5	1	UPSTREAM Sdr INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	16660610	2R_16660610_SNP [dm3] 2R_20773105_SNP [dm6]	T	A	3.869e^-5	1	UPSTREAM CG13443 INTERGENIC
3L	2682188	3L_2682188_SNP [dm3] 3L_2682188_SNP [dm6]	C	G	3.956e^-5	1	INTRON Fife
2R	18994974	2R_18994974_SNP [dm3] 2R_23107451_SNP [dm6]	C	T	3.982e^-5	1	INTERGENIC
2L	13490599	2L_13490599_SNP [dm3] 2L_13490599_SNP [dm6]	C	A	4.017e^-5	1	INTRON CG42784
2R	1015999	2R_1015999_SNP [dm3] 2R_5128494_SNP [dm6]	A	T	4.134e^-5	1	UPSTREAM gus INTRON CR43256 EXON CR43256	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn
2R	1021434	2R_1021434_SNP [dm3] 2R_5133929_SNP [dm6]	G	T	4.209e^-5	1	INTERGENIC
2L	5917901	2L_5917901_SNP [dm3] 2L_5917901_SNP [dm6]	G	A	4.224e^-5	1	SYNONYMOUS_CODING bchs
2R	1038823	2R_1038823_SNP [dm3] 2R_5151318_SNP [dm6]	G	T	4.225e^-5	1	INTRON Atf6
3R	5386571	3R_5386571_SNP [dm3] 3R_9560849_SNP [dm6]	C	G	4.290e^-5	1	DOWNSTREAM CG9393 INTRON MBD-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2R	9766761	2R_9766761_SNP [dm3] 2R_13879256_SNP [dm6]	G	A	4.380e^-5	1	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2948375	2L_2948375_SNP [dm3] 2L_2948375_SNP [dm6]	T	A	4.402e^-5	1	NON_SYNONYMOUS_CODING lilli
2L	14657158	2L_14657158_SNP [dm3] 2L_14657158_SNP [dm6]	C	T	4.470e^-5	1	INTRON osp
X	8953057	X_8953057_DEL [dm3] X_9059024_DEL [dm6]	GTGATGG	G	4.562e^-5	1	INTRON CG15365
2L	6724583	2L_6724583_SNP [dm3] 2L_6724583_SNP [dm6]	T	G	4.617e^-5	1	INTRON Liprin-alpha	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_zfh1
2L	4380234	2L_4380234_SNP [dm3] 2L_4380234_SNP [dm6]	G	A	4.807e^-5	1	UTR_3_PRIME Traf4 DOWNSTREAM CG17612	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10290590	3L_10290590_SNP [dm3] 3L_10297490_SNP [dm6]	T	C	4.849e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	26070924	3R_26070924_SNP [dm3] 3R_30245202_SNP [dm6]	G	A	4.864e^-5	1	INTRON CG9733
2R	2426886	2R_2426886_SNP [dm3] 2R_6539381_SNP [dm6]	A	T	4.881e^-5	1	INTRON jing
3L	10738806	3L_10738806_SNP [dm3] 3L_10745706_SNP [dm6]	T	A	5.094e^-5	1	INTERGENIC
X	3483521	X_3483521_SNP [dm3] X_3589488_SNP [dm6]	G	A	5.107e^-5	1	INTRON AstA-R1
X	14243242	X_14243242_SNP [dm3] X_14349209_SNP [dm6]	G	A	5.215e^-5	1	INTRON dpr8
3L	10290572	3L_10290572_SNP [dm3] 3L_10297472_SNP [dm6]	T	A	5.263e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	16660624	2R_16660624_SNP [dm3] 2R_20773119_SNP [dm6]	G	A	5.411e^-5	1	UPSTREAM CG13443 INTERGENIC
3L	12638877	3L_12638877_INS [dm3] 3L_12645777_INS [dm6]	AT	TGG	5.428e^-5	1	EXON CR32111
2R	1010092	2R_1010092_SNP [dm3] 2R_5122587_SNP [dm6]	A	T	5.468e^-5	1	UPSTREAM gus INTRON gus	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn
X	22242347	X_22242347_SNP [dm3] X_22840511_SNP [dm6]	T	A	5.605e^-5	1	INTRON fog & 1 other
3L	18577945	3L_18577945_SNP [dm3] 3L_18584845_SNP [dm6]	G	T	5.767e^-5	1	DOWNSTREAM CR45435 INTERGENIC
2R	16660627	2R_16660627_SNP [dm3] 2R_20773122_SNP [dm6]	A	G	5.775e^-5	1	UPSTREAM CG13443 INTERGENIC
2R	16660632	2R_16660632_SNP [dm3] 2R_20773127_SNP [dm6]	G	T	5.775e^-5	1	UPSTREAM CG13443 INTERGENIC
3L	2950366	3L_2950366_SNP [dm3] 3L_2950366_SNP [dm6]	G	A	5.810e^-5	1	NON_SYNONYMOUS_CODING CG32846 INTRON Shab
2R	1010438	2R_1010438_SNP [dm3] 2R_5122933_SNP [dm6]	T	A	5.833e^-5	1	UPSTREAM gus INTRON gus	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3L	10738810	3L_10738810_SNP [dm3] 3L_10745710_SNP [dm6]	A	T	5.880e^-5	1	INTERGENIC
2R	16665889	2R_16665889_SNP [dm3] 2R_20778384_SNP [dm6]	A	G	5.913e^-5	1	SYNONYMOUS_CODING CG43711 UPSTREAM CG43710
X	16565038	X_16565038_INS [dm3] X_16671005_INS [dm6]	C	CGATGC	6.062e^-5	1	INTRON CG13012	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10743523	3R_10743523_SNP [dm3] 3R_14917801_SNP [dm6]	A	G	6.156e^-5	1	UPSTREAM Sdr INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	6103112	3L_6103112_SNP [dm3] 3L_6110012_SNP [dm6]	A	G	6.176e^-5	1	INTRON Ets65A	TF binding site mE1_TFBS_cad
2L	10127212	2L_10127212_SNP [dm3] 2L_10127212_SNP [dm6]	C	G	6.328e^-5	1	INTRON CG44153
3L	11173572	3L_11173572_SNP [dm3] 3L_11180472_SNP [dm6]	C	A	6.359e^-5	1	INTRON GlcAT-P
2R	1042714	2R_1042714_SNP [dm3] 2R_5155209_SNP [dm6]	A	T	6.400e^-5	1	DOWNSTREAM Atf6 INTERGENIC
2R	1042715	2R_1042715_SNP [dm3] 2R_5155210_SNP [dm6]	C	T	6.400e^-5	1	DOWNSTREAM Atf6 INTERGENIC
2L	5262184	2L_5262184_SNP [dm3] 2L_5262184_SNP [dm6]	G	A	6.450e^-5	1	INTRON tkv	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11186024	3L_11186024_SNP [dm3] 3L_11192924_SNP [dm6]	T	C	6.470e^-5	1	INTRON GlcAT-P
2R	1029081	2R_1029081_SNP [dm3] 2R_5141576_SNP [dm6]	G	A	6.470e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16685732	2R_16685732_SNP [dm3] 2R_20798227_SNP [dm6]	C	A	6.497e^-5	1	INTERGENIC
2R	19692912	2R_19692912_SNP [dm3] 2R_23805389_SNP [dm6]	A	G	6.523e^-5	1	NON_SYNONYMOUS_CODING CG5539 DOWNSTREAM Ssrp INTRON CG13561	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2588834	2L_2588834_SNP [dm3] 2L_2588834_SNP [dm6]	C	G	6.597e^-5	1	INTERGENIC
2R	13998082	2R_13998082_SNP [dm3] 2R_18110577_SNP [dm6]	C	T	6.615e^-5	1	DOWNSTREAM CG34196 INTERGENIC
2R	14865989	2R_14865989_SNP [dm3] 2R_18978484_SNP [dm6]	T	C	6.686e^-5	1	SYNONYMOUS_CODING CG18605	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13998150	2R_13998150_DEL [dm3] 2R_18110645_DEL [dm6]	CTTAGTCTTGG...	A	6.778e^-5	1	DOWNSTREAM CG34196 INTERGENIC
2R	11178877	2R_11178877_SNP [dm3] 2R_15291372_SNP [dm6]	C	T	6.879e^-5	1	UPSTREAM Trpm INTRON Trpm
X	11440481	X_11440481_SNP [dm3] X_11546448_SNP [dm6]	T	A	6.939e^-5	1	UPSTREAM mir-2492 INTRON Drak
2R	1021452	2R_1021452_SNP [dm3] 2R_5133947_SNP [dm6]	T	A	6.986e^-5	1	INTERGENIC
3L	11186236	3L_11186236_SNP [dm3] 3L_11193136_SNP [dm6]	G	T	7.104e^-5	1	INTRON GlcAT-P
2R	1007650	2R_1007650_SNP [dm3] 2R_5120145_SNP [dm6]	G	A	7.132e^-5	1	INTRON gus
3L	12638504	3L_12638504_SNP [dm3] 3L_12645404_SNP [dm6]	G	T	7.366e^-5	1	EXON CR32111
3R	26943544	3R_26943544_SNP [dm3] 3R_31117822_SNP [dm6]	G	A	7.470e^-5	1	INTERGENIC
3L	11186096	3L_11186096_SNP [dm3] 3L_11192996_SNP [dm6]	G	T	7.519e^-5	1	INTRON GlcAT-P
X	18040083	X_18040083_SNP [dm3] X_18146050_SNP [dm6]	A	G	7.575e^-5	1	INTERGENIC
2R	13998163	2R_13998163_SNP [dm3] 2R_18110658_SNP [dm6]	G	T	7.580e^-5	1	DOWNSTREAM CG34196 INTERGENIC
2L	16874637	2L_16874637_SNP [dm3] 2L_16874637_SNP [dm6]	A	G	7.606e^-5	1	INTRON CR31781
3R	16421912	3R_16421912_DEL [dm3] 3R_20596190_DEL [dm6]	TAGT	T	7.790e^-5	1	INTRON bon	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	1042661	2R_1042661_SNP [dm3] 2R_5155156_SNP [dm6]	A	T	7.884e^-5	1	DOWNSTREAM Atf6 INTERGENIC
3L	12065970	3L_12065970_SNP [dm3] 3L_12072870_SNP [dm6]	T	G	7.962e^-5	1	INTRON Sema-5c	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	1042654	2R_1042654_SNP [dm3] 2R_5155149_SNP [dm6]	C	A	8.053e^-5	1	DOWNSTREAM Atf6 INTERGENIC
2L	2822281	2L_2822281_SNP [dm3] 2L_2822281_SNP [dm6]	C	G	8.100e^-5	1	INTRON Duox
2L	15556751	2L_15556751_SNP [dm3] 2L_15556751_SNP [dm6]	A	C	8.104e^-5	1	INTRON kek3	TF binding site mE1_TFBS_HSA
2R	1015970	2R_1015970_SNP [dm3] 2R_5128465_SNP [dm6]	G	T	8.249e^-5	1	UPSTREAM CR43256 & 1 other INTRON CR43256	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn
3R	20720642	3R_20720642_SNP [dm3] 3R_24894920_SNP [dm6]	A	T	8.434e^-5	1	UPSTREAM CG31121 INTRON CG11069	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	9977600	2R_9977600_SNP [dm3] 2R_14090095_SNP [dm6]	T	G	8.435e^-5	1	UPSTREAM CG42287 & 1 other INTRON Prosap
2R	11175909	2R_11175909_SNP [dm3] 2R_15288404_SNP [dm6]	G	A	8.489e^-5	1	INTRON Trpm
2L	13062885	2L_13062885_SNP [dm3] 2L_13062885_SNP [dm6]	C	A	8.499e^-5	1	INTERGENIC
3L	10843673	3L_10843673_SNP [dm3] 3L_10850573_SNP [dm6]	C	A	8.537e^-5	1	INTRON CR45169	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	11146988	2L_11146988_SNP [dm3] 2L_11146988_SNP [dm6]	C	T	8.629e^-5	1	INTRON Gyc32E
2L	15143552	2L_15143552_SNP [dm3] 2L_15143552_SNP [dm6]	A	G	8.682e^-5	1	INTERGENIC
2R	10103225	2R_10103225_SNP [dm3] 2R_14215720_SNP [dm6]	C	G	8.702e^-5	1	DOWNSTREAM mir-308 INTRON RpS23	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	11938896	2L_11938896_SNP [dm3] 2L_11938896_SNP [dm6]	C	T	8.718e^-5	1	SYNONYMOUS_CODING Or33c	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	18856806	3L_18856806_SNP [dm3] 3L_18863706_SNP [dm6]	T	C	8.758e^-5	1	START_GAINED CG6865 UTR_5_PRIME CG6865 UPSTREAM CG6865
3R	26075655	3R_26075655_SNP [dm3] 3R_30249933_SNP [dm6]	A	G	8.776e^-5	1	SYNONYMOUS_CODING CG34299 UPSTREAM CG9682 INTRON CG34299	TF binding site mE1_TFBS_inv
3L	2682181	3L_2682181_SNP [dm3] 3L_2682181_SNP [dm6]	C	T	8.816e^-5	1	INTRON Fife
X	14669817	X_14669817_SNP [dm3] X_14775784_SNP [dm6]	G	T	8.900e^-5	1	SYNONYMOUS_CODING CG5334 UPSTREAM CG5347
2L	10760787	2L_10760787_SNP [dm3] 2L_10760787_SNP [dm6]	A	G	9.106e^-5	1	UPSTREAM CG6495 INTERGENIC
2R	3767806	2R_3767806_INS [dm3] 2R_7880301_INS [dm6]	A	AA	9.128e^-5	1	INTRON Dgk
2R	12546674	2R_12546674_SNP [dm3] 2R_16659169_SNP [dm6]	C	A	9.204e^-5	1	UPSTREAM Picot INTRON Picot
3L	2193921	3L_2193921_SNP [dm3] 3L_2193921_SNP [dm6]	C	T	9.220e^-5	1	INTERGENIC	TF binding site mE1_TFBS_cad
2R	2459248	2R_2459248_SNP [dm3] 2R_6571743_SNP [dm6]	A	G	9.252e^-5	1	INTRON jing	TF binding site BDTNP1_TFBS_dl
X	3483508	X_3483508_SNP [dm3] X_3589475_SNP [dm6]	G	A	9.336e^-5	1	INTRON AstA-R1
2L	17255471	2L_17255471_SNP [dm3] 2L_17255471_SNP [dm6]	C	G	9.382e^-5	1	INTRON beat-IIIc
2R	972756	2R_972756_SNP [dm3] 2R_5085251_SNP [dm6]	G	A	9.392e^-5	1	INTERGENIC	transposable element FlyBase
2R	1015905	2R_1015905_SNP [dm3] 2R_5128400_SNP [dm6]	T	A	9.417e^-5	1	UPSTREAM CR43256 & 1 other INTRON CR43256	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn
3R	11767875	3R_11767875_SNP [dm3] 3R_15942153_SNP [dm6]	C	T	9.426e^-5	1	INTRON Sap47
2R	7087083	2R_7087083_INS [dm3] 2R_11199578_INS [dm6]	G	GTAAAAAATCAGT...	9.478e^-5	1	INTRON shn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
2R	7089922	2R_7089922_SNP [dm3] 2R_11202417_SNP [dm6]	A	G	9.478e^-5	1	INTRON shn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	5917787	2L_5917787_SNP [dm3] 2L_5917787_SNP [dm6]	C	T	9.694e^-5	1	SYNONYMOUS_CODING bchs
X	16231379	X_16231379_SNP [dm3] X_16337346_SNP [dm6]	A	G	9.871e^-5	1	INTRON Dsp1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14250013	3L_14250013_DEL [dm3] 3L_14256913_DEL [dm6]	ATGCCCCACGAA...	A	9.891e^-5	1	INTERGENIC
2L	7236686	2L_7236686_SNP [dm3] 2L_7236686_SNP [dm6]	G	A	9.970e^-5	1	INTRON Ndae1
3L	15049771	3L_15049771_SNP [dm3] 3L_15056671_SNP [dm6]	T	C	1.025e^-4	1	INTRON Sytbeta
X	16231383	X_16231383_SNP [dm3] X_16337350_SNP [dm6]	A	G	1.038e^-4	1	INTRON Dsp1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10332521	2R_10332521_SNP [dm3] 2R_14445016_SNP [dm6]	A	C	1.045e^-4	1	INTRON Oaz
2R	999359	2R_999359_SNP [dm3] 2R_5111854_SNP [dm6]	C	T	1.047e^-4	1	INTERGENIC
2R	10867784	2R_10867784_SNP [dm3] 2R_14980279_SNP [dm6]	G	A	1.082e^-4	1	UTR_3_PRIME ckn UPSTREAM pcs
3L	10707650	3L_10707650_SNP [dm3] 3L_10714550_SNP [dm6]	T	C	1.091e^-4	1	INTERGENIC
3L	7281169	3L_7281169_SNP [dm3] 3L_7288069_SNP [dm6]	G	A	1.094e^-4	1	INTRON unc-13-4A
2R	16660251	2R_16660251_SNP [dm3] 2R_20772746_SNP [dm6]	G	T	1.100e^-4	1	UPSTREAM CG13443 INTERGENIC	TF binding site mE1_TFBS_HSA
X	9108324	X_9108324_SNP [dm3] X_9214291_SNP [dm6]	C	A	1.106e^-4	1	UPSTREAM Obp8a INTERGENIC
3L	6113140	3L_6113140_SNP [dm3] 3L_6120040_SNP [dm6]	G	T	1.107e^-4	1	INTRON Ets65A	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	13823733	3L_13823733_INS [dm3] 3L_13830633_INS [dm6]	A	AA	1.127e^-4	1	INTERGENIC
2R	7090148	2R_7090148_SNP [dm3] 2R_11202643_SNP [dm6]	G	T	1.143e^-4	1	INTRON shn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	1447535	3L_1447535_SNP [dm3] 3L_1447535_SNP [dm6]	A	T	1.147e^-4	1	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14925631	2L_14925631_SNP [dm3] 2L_14925631_SNP [dm6]	T	A	1.160e^-4	1	SYNONYMOUS_CODING CG3491 INTRON CG42313
2L	5891579	2L_5891579_INS [dm3] 2L_5891579_INS [dm6]	C	CC	1.164e^-4	1	DOWNSTREAM Acp26Ab INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	16735520	X_16735520_SNP [dm3] X_16841487_SNP [dm6]	G	A	1.168e^-4	1	INTRON RSG7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4862102	3R_4862102_SNP [dm3] 3R_9036380_SNP [dm6]	G	A	1.171e^-4	1	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6103589	3L_6103589_SNP [dm3] 3L_6110489_SNP [dm6]	T	C	1.172e^-4	1	UPSTREAM Ets65A INTRON Ets65A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
X	22202793	X_22202793_INS [dm3] X_22800957_INS [dm6]	G	GTG	1.183e^-4	1	INTERGENIC
2R	966756	2R_966756_SNP [dm3] 2R_5079251_SNP [dm6]	G	T	1.184e^-4	1	INTERGENIC
2R	11170506	2R_11170506_SNP [dm3] 2R_15283001_SNP [dm6]	G	T	1.186e^-4	1	SYNONYMOUS_CODING Trpm
4	233280	4_233280_SNP [dm3] 4_212654_SNP [dm6]	T	A	1.190e^-4	1	NON_SYNONYMOUS_CODING Crk SYNONYMOUS_CODING Crk UTR_3_PRIME Crk
2R	7524657	2R_7524657_SNP [dm3] 2R_11637152_SNP [dm6]	A	T	1.198e^-4	1	INTRON CG9005	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	16735481	X_16735481_DEL [dm3] X_16841448_DEL [dm6]	GA	T	1.199e^-4	1	INTRON RSG7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16735514	X_16735514_SNP [dm3] X_16841481_SNP [dm6]	T	A	1.199e^-4	1	INTRON RSG7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9085438	X_9085438_DEL [dm3] X_9191405_DEL [dm6]	TG	A	1.214e^-4	1	UPSTREAM CG12115 & 1 other INTERGENIC
3R	26070949	3R_26070949_SNP [dm3] 3R_30245227_SNP [dm6]	C	A	1.214e^-4	1	INTRON CG9733
3L	12638420	3L_12638420_SNP [dm3] 3L_12645320_SNP [dm6]	T	C	1.221e^-4	1	INTRON CR32111
3R	11443123	3R_11443123_SNP [dm3] 3R_15617401_SNP [dm6]	G	A	1.230e^-4	1	INTERGENIC
3L	6111499	3L_6111499_SNP [dm3] 3L_6118399_SNP [dm6]	A	T	1.232e^-4	1	INTRON Ets65A
2R	7088554	2R_7088554_SNP [dm3] 2R_11201049_SNP [dm6]	C	T	1.234e^-4	1	INTRON shn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_zfh1
2R	996605	2R_996605_SNP [dm3] 2R_5109100_SNP [dm6]	C	T	1.235e^-4	1	INTERGENIC
2R	998994	2R_998994_SNP [dm3] 2R_5111489_SNP [dm6]	A	T	1.235e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4710144	2L_4710144_SNP [dm3] 2L_4710144_SNP [dm6]	T	C	1.242e^-4	1	INTRON CG34351
2R	11179121	2R_11179121_SNP [dm3] 2R_15291616_SNP [dm6]	T	C	1.244e^-4	1	UPSTREAM Trpm INTRON Trpm
3L	6102331	3L_6102331_SNP [dm3] 3L_6109231_SNP [dm6]	T	G	1.269e^-4	1	INTRON Ets65A
2L	5961011	2L_5961011_SNP [dm3] 2L_5961011_SNP [dm6]	A	G	1.283e^-4	1	UPSTREAM Vm26Aa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	13666747	3L_13666747_SNP [dm3] 3L_13673647_SNP [dm6]	T	C	1.290e^-4	1	INTRON bru-3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	22907627	3R_22907627_SNP [dm3] 3R_27081905_SNP [dm6]	G	T	1.295e^-4	1	SYNONYMOUS_CODING CG14257 INTRON CG14257	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	10892510	X_10892510_DEL [dm3] X_10998477_DEL [dm6]	GC	G	1.302e^-4	1	INTRON CG42339
2R	7329816	2R_7329816_SNP [dm3] 2R_11442311_SNP [dm6]	A	T	1.303e^-4	1	UPSTREAM qvr DOWNSTREAM CG7777 INTERGENIC
2L	17251674	2L_17251674_SNP [dm3] 2L_17251674_SNP [dm6]	G	T	1.320e^-4	1	INTRON beat-IIIc
2L	5892270	2L_5892270_SNP [dm3] 2L_5892270_SNP [dm6]	T	C	1.333e^-4	1	DOWNSTREAM Acp26Ab & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	995189	2R_995189_SNP [dm3] 2R_5107684_SNP [dm6]	C	A	1.335e^-4	1	INTERGENIC	transposable element FlyBase
X	5869023	X_5869023_SNP [dm3] X_5974990_SNP [dm6]	A	C	1.342e^-4	1	INTRON Grip
X	22242407	X_22242407_SNP [dm3] X_22840571_SNP [dm6]	C	T	1.374e^-4	1	INTRON fog & 1 other
3L	2193996	3L_2193996_SNP [dm3] 3L_2193996_SNP [dm6]	G	A	1.377e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	17255468	2L_17255468_SNP [dm3] 2L_17255468_SNP [dm6]	G	T	1.391e^-4	1	INTRON beat-IIIc
3L	18856940	3L_18856940_SNP [dm3] 3L_18863840_SNP [dm6]	G	A	1.396e^-4	1	UPSTREAM CG6865 INTRON CG6865
2R	1039302	2R_1039302_SNP [dm3] 2R_5151797_SNP [dm6]	T	C	1.412e^-4	1	INTRON Atf6	transposable element FlyBase
2R	5169979	2R_5169979_SNP [dm3] 2R_9282474_SNP [dm6]	G	A	1.431e^-4	1	INTRON Pkn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14363413	2L_14363413_SNP [dm3] 2L_14363413_SNP [dm6]	C	T	1.431e^-4	1	SYNONYMOUS_CODING spel1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	10868635	2R_10868635_SNP [dm3] 2R_14981130_SNP [dm6]	T	C	1.434e^-4	1	UPSTREAM pcs DOWNSTREAM ckn INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Ubx
X	16429611	X_16429611_SNP [dm3] X_16535578_SNP [dm6]	C	T	1.439e^-4	1	INTERGENIC
3L	12638619	3L_12638619_SNP [dm3] 3L_12645519_SNP [dm6]	G	A	1.440e^-4	1	EXON CR32111
2R	987048	2R_987048_SNP [dm3] 2R_5099543_SNP [dm6]	A	T	1.458e^-4	1	INTERGENIC	transposable element FlyBase
X	4733726	X_4733726_SNP [dm3] X_4839693_SNP [dm6]	A	T	1.472e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	4380018	2L_4380018_SNP [dm3] 2L_4380018_SNP [dm6]	G	T	1.479e^-4	1	SYNONYMOUS_CODING Traf4 DOWNSTREAM CG17612	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
X	15320555	X_15320555_INS [dm3] X_15426522_INS [dm6]	T	TT	1.484e^-4	1	INTRON Cngl
X	22242527	X_22242527_SNP [dm3] X_22840691_SNP [dm6]	C	T	1.488e^-4	1	INTRON fog & 1 other
2L	10759801	2L_10759801_SNP [dm3] 2L_10759801_SNP [dm6]	C	T	1.497e^-4	1	INTERGENIC
2R	12412304	2R_12412304_SNP [dm3] 2R_16524799_SNP [dm6]	T	A	1.500e^-4	1	INTRON Sema-2a
2R	17979633	2R_17979633_SNP [dm3] 2R_22092128_SNP [dm6]	A	G	1.502e^-4	1	UPSTREAM CG44163 INTRON CG11073	TF binding site mE1_TFBS_chinmo
2R	7088858	2R_7088858_SNP [dm3] 2R_11201353_SNP [dm6]	A	C	1.520e^-4	1	INTRON shn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_zfh1
2L	21633656	2L_21633656_SNP [dm3] 2L_21633656_SNP [dm6]	A	G	1.546e^-4	1	SYNONYMOUS_CODING Ac3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	10277025	3R_10277025_INS [dm3] 3R_14451303_INS [dm6]	T	TTT	1.558e^-4	1	INTRON cv-c
3L	10707651	3L_10707651_SNP [dm3] 3L_10714551_SNP [dm6]	C	T	1.562e^-4	1	INTERGENIC
2R	11156395	2R_11156395_SNP [dm3] 2R_15268890_SNP [dm6]	C	G	1.564e^-4	1	INTRON Trpm
2L	14758040	2L_14758040_DEL [dm3] 2L_14758040_DEL [dm6]	AA	A	1.574e^-4	1	INTERGENIC
2R	984639	2R_984639_SNP [dm3] 2R_5097134_SNP [dm6]	G	A	1.600e^-4	1	INTERGENIC	transposable element FlyBase
3L	2194008	3L_2194008_SNP [dm3] 3L_2194008_SNP [dm6]	C	T	1.607e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	14425074	2L_14425074_SNP [dm3] 2L_14425074_SNP [dm6]	T	G	1.629e^-4	1	INTRON Cpr35B	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	20200009	2R_20200009_SNP [dm3] 2R_24312486_SNP [dm6]	T	A	1.653e^-4	1	UTR_3_PRIME betaTub60D	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	9358278	3L_9358278_SNP [dm3] 3L_9365178_SNP [dm6]	T	C	1.654e^-4	1	SYNONYMOUS_CODING CG4447 INTRON Klp67A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	1035812	2R_1035812_SNP [dm3] 2R_5148307_SNP [dm6]	A	C	1.657e^-4	1	SYNONYMOUS_CODING Atf6
2R	5169980	2R_5169980_SNP [dm3] 2R_9282475_SNP [dm6]	G	C	1.668e^-4	1	INTRON Pkn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18563685	3L_18563685_SNP [dm3] 3L_18570585_SNP [dm6]	T	G	1.675e^-4	1	INTRON AstC-R1
2R	8640266	2R_8640266_SNP [dm3] 2R_12752761_SNP [dm6]	C	T	1.689e^-4	1	DOWNSTREAM Taz INTRON mos
3R	5385172	3R_5385172_SNP [dm3] 3R_9559450_SNP [dm6]	G	T	1.702e^-4	1	UTR_5_PRIME AP-1mu UPSTREAM MBD-like	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	9047436	3R_9047436_SNP [dm3] 3R_13221714_SNP [dm6]	C	T	1.705e^-4	1	INTERGENIC
2L	4781162	2L_4781162_SNP [dm3] 2L_4781162_SNP [dm6]	A	T	1.708e^-4	1	INTRON CG15630
3L	6111801	3L_6111801_SNP [dm3] 3L_6118701_SNP [dm6]	C	T	1.715e^-4	1	INTRON Ets65A
X	5569851	X_5569851_SNP [dm3] X_5675818_SNP [dm6]	G	T	1.716e^-4	1	INTRON Tre1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi
2L	9995327	2L_9995327_SNP [dm3] 2L_9995327_SNP [dm6]	G	A	1.731e^-4	1	UTR_3_PRIME bib DOWNSTREAM CG31875
2R	16670393	2R_16670393_SNP [dm3] 2R_20782888_SNP [dm6]	A	G	1.736e^-4	1	INTERGENIC
2L	10759811	2L_10759811_SNP [dm3] 2L_10759811_SNP [dm6]	C	T	1.739e^-4	1	INTERGENIC
2L	17887052	2L_17887052_DEL [dm3] 2L_17887052_DEL [dm6]	TTAT	T	1.765e^-4	1	INTERGENIC
3L	8254916	3L_8254916_SNP [dm3] 3L_8261816_SNP [dm6]	T	C	1.768e^-4	1	INTRON Dscam4
3L	11152879	3L_11152879_SNP [dm3] 3L_11159779_SNP [dm6]	C	G	1.768e^-4	1	NON_SYNONYMOUS_CODING CG32082
X	16735776	X_16735776_SNP [dm3] X_16841743_SNP [dm6]	T	A	1.771e^-4	1	INTRON RSG7	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4795363	2L_4795363_SNP [dm3] 2L_4795363_SNP [dm6]	C	T	1.779e^-4	1	SYNONYMOUS_CODING CG3294	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	983943	2R_983943_SNP [dm3] 2R_5096438_SNP [dm6]	C	A	1.787e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad transposable element FlyBase
3R	21783280	3R_21783280_SNP [dm3] 3R_25957558_SNP [dm6]	G	C	1.801e^-4	1	INTERGENIC
2R	16665727	2R_16665727_SNP [dm3] 2R_20778222_SNP [dm6]	A	T	1.823e^-4	1	UPSTREAM CG43710 DOWNSTREAM CG43711 INTERGENIC
2R	11165729	2R_11165729_SNP [dm3] 2R_15278224_SNP [dm6]	T	C	1.832e^-4	1	SYNONYMOUS_CODING Trpm
2R	5345625	2R_5345625_SNP [dm3] 2R_9458120_SNP [dm6]	C	T	1.853e^-4	1	SYNONYMOUS_CODING Camta INTRON Camta	TF binding site mE1_TFBS_cad
3R	18855266	3R_18855266_SNP [dm3] 3R_23029544_SNP [dm6]	C	T	1.861e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
X	22242399	X_22242399_SNP [dm3] X_22840563_SNP [dm6]	G	C	1.865e^-4	1	INTRON fog & 1 other
3R	14189541	3R_14189541_SNP [dm3] 3R_18363819_SNP [dm6]	C	T	1.883e^-4	1	SPLICE_SITE_REGION CG7669 DOWNSTREAM WRNexo INTRON CG7669
2L	17255952	2L_17255952_DEL [dm3] 2L_17255952_DEL [dm6]	CTCATCACCACCCACC...	C	1.889e^-4	1	INTRON beat-IIIc
X	14801220	X_14801220_SNP [dm3] X_14907187_SNP [dm6]	T	A	1.897e^-4	1	NON_SYNONYMOUS_CODING CG9509 INTRON Flo2
2L	17347775	2L_17347775_SNP [dm3] 2L_17347775_SNP [dm6]	A	G	1.899e^-4	1	INTERGENIC
2L	5891659	2L_5891659_SNP [dm3] 2L_5891659_SNP [dm6]	G	C	1.900e^-4	1	DOWNSTREAM Acp26Ab INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	11830332	2R_11830332_SNP [dm3] 2R_15942827_SNP [dm6]	A	G	1.900e^-4	1	UPSTREAM Cyp4aa1 INTERGENIC
3L	6601099	3L_6601099_SNP [dm3] 3L_6607999_SNP [dm6]	C	T	1.902e^-4	1	SYNONYMOUS_CODING CG8368 DOWNSTREAM CR45418	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	8207016	X_8207016_SNP [dm3] X_8312983_SNP [dm6]	C	A	1.914e^-4	1	INTRON nAChRalpha3	transposable element FlyBase
2R	7523826	2R_7523826_SNP [dm3] 2R_11636321_SNP [dm6]	C	T	1.930e^-4	1	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10867961	2R_10867961_SNP [dm3] 2R_14980456_SNP [dm6]	A	G	1.936e^-4	1	UTR_3_PRIME ckn UPSTREAM pcs	TF binding site BDTNP1_TFBS_dl
2L	2590789	2L_2590789_DEL [dm3] 2L_2590789_DEL [dm6]	AA	A	1.938e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
3R	9047430	3R_9047430_SNP [dm3] 3R_13221708_SNP [dm6]	G	T	1.939e^-4	1	INTERGENIC
2L	13062888	2L_13062888_SNP [dm3] 2L_13062888_SNP [dm6]	G	T	1.940e^-4	1	INTERGENIC
2L	13062902	2L_13062902_SNP [dm3] 2L_13062902_SNP [dm6]	A	C	1.940e^-4	1	INTERGENIC
3R	19098415	3R_19098415_SNP [dm3] 3R_23272693_SNP [dm6]	C	T	1.943e^-4	1	INTRON orb
2L	888102	2L_888102_SNP [dm3] 2L_888102_SNP [dm6]	A	G	1.959e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	8866154	3L_8866154_DEL [dm3] 3L_8873054_DEL [dm6]	AA	A	1.982e^-4	1	INTRON dally	TF binding site mE1_TFBS_cad
3L	12233714	3L_12233714_SNP [dm3] 3L_12240614_SNP [dm6]	C	T	1.984e^-4	1	INTRON app	TF binding site BDTNP1_TFBS_twi
3L	10440345	3L_10440345_SNP [dm3] 3L_10447245_SNP [dm6]	G	T	1.990e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	16746684	X_16746684_SNP [dm3] X_16852651_SNP [dm6]	T	C	1.990e^-4	1	INTRON CG13003
3R	25322629	3R_25322629_SNP [dm3] 3R_29496907_SNP [dm6]	A	T	1.994e^-4	1	INTRON CG2010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2R	7329843	2R_7329843_SNP [dm3] 2R_11442338_SNP [dm6]	A	G	1.997e^-4	1	UPSTREAM qvr DOWNSTREAM CG7777 INTERGENIC
2L	5961822	2L_5961822_SNP [dm3] 2L_5961822_SNP [dm6]	A	G	2.002e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10113482	2R_10113482_SNP [dm3] 2R_14225977_SNP [dm6]	A	G	2.006e^-4	1	INTRON CG8468	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3238419	X_3238419_SNP [dm3] X_3344386_SNP [dm6]	T	C	2.014e^-4	1	DOWNSTREAM dnc INTRON CR44886	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	5371064	3R_5371064_SNP [dm3] 3R_9545342_SNP [dm6]	A	C	2.017e^-4	1	INTRON mura	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2L	14424118	2L_14424118_SNP [dm3] 2L_14424118_SNP [dm6]	C	T	2.019e^-4	1	DOWNSTREAM Cpr35B INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	6395013	3L_6395013_SNP [dm3] 3L_6401913_SNP [dm6]	G	A	2.020e^-4	1	INTRON CG42747
2L	4854272	2L_4854272_SNP [dm3] 2L_4854272_SNP [dm6]	A	C	2.041e^-4	1	INTRON pog
2L	18918003	2L_18918003_SNP [dm3] 2L_18918003_SNP [dm6]	A	G	2.042e^-4	1	INTRON ssp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	26811085	3R_26811085_SNP [dm3] 3R_30985363_SNP [dm6]	G	A	2.056e^-4	1	INTRON 5-HT7
X	4645220	X_4645220_SNP [dm3] X_4751187_SNP [dm6]	T	A	2.068e^-4	1	INTERGENIC
2L	2590827	2L_2590827_SNP [dm3] 2L_2590827_SNP [dm6]	G	A	2.072e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
3R	9122747	3R_9122747_SNP [dm3] 3R_13297025_SNP [dm6]	G	T	2.074e^-4	1	INTRON CG8773
2R	9207066	2R_9207066_DEL [dm3] 2R_13319561_DEL [dm6]	TT	G	2.077e^-4	1	INTERGENIC
3R	19080447	3R_19080447_SNP [dm3] 3R_23254725_SNP [dm6]	A	G	2.081e^-4	1	UTR_3_PRIME EloA DOWNSTREAM wda
3R	8096417	3R_8096417_SNP [dm3] 3R_12270695_SNP [dm6]	G	A	2.091e^-4	1	UPSTREAM CG17738 DOWNSTREAM CR44039 INTRON svp
3L	16978975	3L_16978975_SNP [dm3] 3L_16985875_SNP [dm6]	A	G	2.102e^-4	1	UPSTREAM Exn INTRON Exn	TF binding site mE1_TFBS_bab1 mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3R	19189462	3R_19189462_SNP [dm3] 3R_23363740_SNP [dm6]	C	T	2.124e^-4	1	UPSTREAM CG4408 INTERGENIC
3L	12702878	3L_12702878_SNP [dm3] 3L_12709778_SNP [dm6]	A	G	2.130e^-4	1	UTR_3_PRIME mirr DOWNSTREAM mirr	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	17340756	3L_17340756_SNP [dm3] 3L_17347656_SNP [dm6]	G	A	2.133e^-4	1	INTRON Mip
2R	7523154	2R_7523154_SNP [dm3] 2R_11635649_SNP [dm6]	C	T	2.137e^-4	1	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
3L	15870453	3L_15870453_SNP [dm3] 3L_15877353_SNP [dm6]	A	G	2.142e^-4	1	UPSTREAM CR44051 INTRON pHCl
3L	2446329	3L_2446329_SNP [dm3] 3L_2446329_SNP [dm6]	C	T	2.159e^-4	1	INTRON CG45186
X	22199745	X_22199745_SNP [dm3] X_22797909_SNP [dm6]	A	C	2.162e^-4	1	DOWNSTREAM CR44997 INTERGENIC
2R	17291163	2R_17291163_SNP [dm3] 2R_21403658_SNP [dm6]	G	C	2.167e^-4	1	INTRON Sdc
3L	6395012	3L_6395012_SNP [dm3] 3L_6401912_SNP [dm6]	T	C	2.174e^-4	1	INTRON CG42747
3L	17956812	3L_17956812_SNP [dm3] 3L_17963712_SNP [dm6]	T	G	2.181e^-4	1	INTRON Eip75B
2L	4846981	2L_4846981_INS [dm3] 2L_4846981_INS [dm6]	A	AA	2.181e^-4	1	UPSTREAM mxt & 1 other INTRON mxt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	9604025	3R_9604025_SNP [dm3] 3R_13778303_SNP [dm6]	G	A	2.184e^-4	1	NON_SYNONYMOUS_CODING CG9297	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	17629332	X_17629332_SNP [dm3] X_17735299_SNP [dm6]	T	A	2.188e^-4	1	INTRON CG42684	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	4776144	2L_4776144_SNP [dm3] 2L_4776144_SNP [dm6]	C	A	2.193e^-4	1	INTRON CG15630
3L	6100930	3L_6100930_SNP [dm3] 3L_6107830_SNP [dm6]	G	C	2.194e^-4	1	INTRON Ets65A	TF binding site mE1_TFBS_cad
2L	17887092	2L_17887092_SNP [dm3] 2L_17887092_SNP [dm6]	G	T	2.195e^-4	1	INTERGENIC
3L	18870405	3L_18870405_SNP [dm3] 3L_18877305_SNP [dm6]	G	A	2.199e^-4	1	SYNONYMOUS_CODING Ugt DOWNSTREAM CG3961
2R	7087085	2R_7087085_SNP [dm3] 2R_11199580_SNP [dm6]	T	C	2.209e^-4	1	INTRON shn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
X	19668414	X_19668414_SNP [dm3] X_19774381_SNP [dm6]	G	A	2.217e^-4	1	INTRON vfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1401115	3L_1401115_SNP [dm3] 3L_1401115_SNP [dm6]	A	G	2.233e^-4	1	SYNONYMOUS_CODING CG32320 UPSTREAM tRNA:E4:62Ad & 1 other INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	5871821	3L_5871821_SNP [dm3] 3L_5878721_SNP [dm6]	C	T	2.238e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
4	249748	4_249748_SNP [dm3] 4_229122_SNP [dm6]	C	A	2.244e^-4	1	SYNONYMOUS_CODING yellow-h
2R	6867766	2R_6867766_SNP [dm3] 2R_10980261_SNP [dm6]	G	C	2.246e^-4	1	UTR_3_PRIME luna
3L	12041341	3L_12041341_SNP [dm3] 3L_12048241_SNP [dm6]	C	G	2.247e^-4	1	INTRON rols
2R	7523966	2R_7523966_DEL [dm3] 2R_11636461_DEL [dm6]	AAACGGGGTGACGGTGGCCA...	A	2.250e^-4	1	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12707584	3L_12707584_SNP [dm3] 3L_12714484_SNP [dm6]	G	C	2.256e^-4	1	INTERGENIC
X	18040255	X_18040255_SNP [dm3] X_18146222_SNP [dm6]	C	A	2.256e^-4	1	INTERGENIC
3R	5370503	3R_5370503_SNP [dm3] 3R_9544781_SNP [dm6]	A	C	2.257e^-4	1	INTRON mura	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
X	16577062	X_16577062_SNP [dm3] X_16683029_SNP [dm6]	T	A	2.290e^-4	1	SPLICE_SITE_REGION Axs SYNONYMOUS_CODING Axs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16746680	X_16746680_SNP [dm3] X_16852647_SNP [dm6]	A	T	2.294e^-4	1	INTRON CG13003
2L	2589381	2L_2589381_SNP [dm3] 2L_2589381_SNP [dm6]	A	G	2.300e^-4	1	INTERGENIC
X	10114467	X_10114467_SNP [dm3] X_10220434_SNP [dm6]	T	A	2.301e^-4	1	UTR_5_PRIME CG34408	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	971506	2R_971506_SNP [dm3] 2R_5084001_SNP [dm6]	A	T	2.302e^-4	1	INTERGENIC
2L	4845082	2L_4845082_SNP [dm3] 2L_4845082_SNP [dm6]	G	T	2.314e^-4	1	SPLICE_SITE_REGION mxt INTRON mxt	TF binding site mE1_TFBS_chinmo
X	11740242	X_11740242_SNP [dm3] X_11846209_SNP [dm6]	T	G	2.315e^-4	1	UPSTREAM CG15740 INTERGENIC	TF binding site BDTNP1_TFBS_sna
2L	5960951	2L_5960951_SNP [dm3] 2L_5960951_SNP [dm6]	A	T	2.319e^-4	1	UPSTREAM Vm26Aa INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	16816324	2R_16816324_SNP [dm3] 2R_20928819_SNP [dm6]	A	T	2.331e^-4	1	INTRON Rx
3L	11186000	3L_11186000_SNP [dm3] 3L_11192900_SNP [dm6]	G	T	2.332e^-4	1	INTRON GlcAT-P
2R	19974896	2R_19974896_DEL [dm3] 2R_24087373_DEL [dm6]	AGGATTGCAGCGCATTGT...	A	2.339e^-4	1	INTRON snama	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	18859225	3R_18859225_SNP [dm3] 3R_23033503_SNP [dm6]	C	A	2.339e^-4	1	NON_SYNONYMOUS_CODING CG13833
3R	6629771	3R_6629771_SNP [dm3] 3R_10804049_SNP [dm6]	G	A	2.345e^-4	1	UPSTREAM CG14692 INTERGENIC
2L	11147099	2L_11147099_SNP [dm3] 2L_11147099_SNP [dm6]	G	C	2.347e^-4	1	INTRON Gyc32E
2L	5892242	2L_5892242_SNP [dm3] 2L_5892242_SNP [dm6]	G	T	2.352e^-4	1	DOWNSTREAM Acp26Ab & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	3483509	X_3483509_SNP [dm3] X_3589476_SNP [dm6]	A	C	2.358e^-4	1	INTRON AstA-R1
X	5569711	X_5569711_SNP [dm3] X_5675678_SNP [dm6]	C	T	2.360e^-4	1	INTRON Tre1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5962130	2L_5962130_SNP [dm3] 2L_5962130_SNP [dm6]	T	A	2.366e^-4	1	DOWNSTREAM psd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10830725	2L_10830725_SNP [dm3] 2L_10830725_SNP [dm6]	G	A	2.374e^-4	1	INTRON Nos
2L	3983107	2L_3983107_SNP [dm3] 2L_3983107_SNP [dm6]	A	C	2.390e^-4	1	INTRON fred
3R	10552734	3R_10552734_INS [dm3] 3R_14727012_INS [dm6]	G	GTGG	2.400e^-4	1	INTRON CG7530
3L	18860185	3L_18860185_SNP [dm3] 3L_18867085_SNP [dm6]	A	C	2.412e^-4	1	NON_SYNONYMOUS_CODING CG14074 UPSTREAM Dysb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	5960952	2L_5960952_DEL [dm3] 2L_5960952_DEL [dm6]	CA	C	2.415e^-4	1	UPSTREAM Vm26Aa INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	13823721	3L_13823721_SNP [dm3] 3L_13830621_SNP [dm6]	C	A	2.421e^-4	1	INTERGENIC
3L	12702884	3L_12702884_SNP [dm3] 3L_12709784_SNP [dm6]	T	C	2.425e^-4	1	UTR_3_PRIME mirr DOWNSTREAM mirr	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	17008788	2L_17008788_SNP [dm3] 2L_17008788_SNP [dm6]	A	G	2.427e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
2R	7525451	2R_7525451_SNP [dm3] 2R_11637946_SNP [dm6]	A	G	2.431e^-4	1	INTRON CG9005	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
3R	17549545	3R_17549545_SNP [dm3] 3R_21723823_SNP [dm6]	G	A	2.432e^-4	1	DOWNSTREAM CR44096 INTERGENIC
2L	5860966	2L_5860966_SNP [dm3] 2L_5860966_SNP [dm6]	A	G	2.439e^-4	1	SYNONYMOUS_CODING rau	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5970937	X_5970937_SNP [dm3] X_6076904_SNP [dm6]	G	A	2.442e^-4	1	SYNONYMOUS_CODING CG4666
2L	10774550	2L_10774550_SNP [dm3] 2L_10774550_SNP [dm6]	T	C	2.465e^-4	1	SYNONYMOUS_CODING CG31869
2R	7523138	2R_7523138_DEL [dm3] 2R_11635633_DEL [dm6]	AGCTAAGGGA	A	2.467e^-4	1	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
3R	21854228	3R_21854228_SNP [dm3] 3R_26028506_SNP [dm6]	T	C	2.467e^-4	1	DOWNSTREAM E_spl_m5-HLH INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	9108311	X_9108311_SNP [dm3] X_9214278_SNP [dm6]	C	G	2.473e^-4	1	UPSTREAM Obp8a INTERGENIC
4	218617	4_218617_SNP [dm3] 4_197991_SNP [dm6]	T	A	2.477e^-4	1	NON_SYNONYMOUS_CODING CG31998
3L	11892533	3L_11892533_SNP [dm3] 3L_11899433_SNP [dm6]	A	G	2.483e^-4	1	INTRON CG44837 & 1 other
X	10085837	X_10085837_SNP [dm3] X_10191804_SNP [dm6]	A	C	2.488e^-4	1	NON_SYNONYMOUS_CODING CG43902 INTRON CR44894
2R	9901731	2R_9901731_SNP [dm3] 2R_14014226_SNP [dm6]	T	A	2.502e^-4	1	INTRON mam
3R	25569049	3R_25569049_SNP [dm3] 3R_29743327_SNP [dm6]	A	G	2.503e^-4	1	SYNONYMOUS_CODING CG7609
2L	15549344	2L_15549344_SNP [dm3] 2L_15549344_SNP [dm6]	G	A	2.504e^-4	1	UPSTREAM CR45728 INTERGENIC
3R	26811050	3R_26811050_SNP [dm3] 3R_30985328_SNP [dm6]	C	T	2.515e^-4	1	INTRON 5-HT7
3L	14302632	3L_14302632_SNP [dm3] 3L_14309532_SNP [dm6]	C	G	2.532e^-4	1	INTRON fz
2L	5960995	2L_5960995_SNP [dm3] 2L_5960995_SNP [dm6]	G	A	2.534e^-4	1	UPSTREAM Vm26Aa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	15546687	2L_15546687_SNP [dm3] 2L_15546687_SNP [dm6]	C	A	2.542e^-4	1	UPSTREAM Skadu INTERGENIC
3L	12233571	3L_12233571_SNP [dm3] 3L_12240471_SNP [dm6]	T	G	2.552e^-4	1	INTRON app	TF binding site BDTNP1_TFBS_twi
2L	14459269	2L_14459269_SNP [dm3] 2L_14459269_SNP [dm6]	A	T	2.560e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2L	12515002	2L_12515002_SNP [dm3] 2L_12515002_SNP [dm6]	T	C	2.562e^-4	1	INTRON bun
3L	3633490	3L_3633490_SNP [dm3] 3L_3633490_SNP [dm6]	C	T	2.564e^-4	1	INTRON dar1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	3792946	3L_3792946_SNP [dm3] 3L_3792946_SNP [dm6]	T	C	2.582e^-4	1	INTRON CG32264
3L	6101010	3L_6101010_DEL [dm3] 3L_6107910_DEL [dm6]	AGGAGCTGCGTAAAAATATT...	A	2.607e^-4	1	INTRON Ets65A	TF binding site mE1_TFBS_cad
2R	1036868	2R_1036868_SNP [dm3] 2R_5149363_SNP [dm6]	G	T	2.621e^-4	1	INTRON Atf6
2L	5961013	2L_5961013_SNP [dm3] 2L_5961013_SNP [dm6]	A	C	2.635e^-4	1	UPSTREAM Vm26Aa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	9355013	3L_9355013_SNP [dm3] 3L_9361913_SNP [dm6]	A	C	2.636e^-4	1	UTR_3_PRIME CG34455 UPSTREAM CG34456 DOWNSTREAM Klp67A
2L	15507729	2L_15507729_SNP [dm3] 2L_15507729_SNP [dm6]	C	T	2.641e^-4	1	INTERGENIC
2R	8871048	2R_8871048_SNP [dm3] 2R_12983543_SNP [dm6]	G	A	2.643e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	1797628	2R_1797628_SNP [dm3] 2R_5910123_SNP [dm6]	C	G	2.650e^-4	1	INTRON CG43366
X	22241522	X_22241522_SNP [dm3] X_22839686_SNP [dm6]	T	G	2.651e^-4	1	INTRON fog & 1 other
3R	16414669	3R_16414669_SNP [dm3] 3R_20588947_SNP [dm6]	C	T	2.652e^-4	1	UPSTREAM Sep2 INTRON Srp72	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	27480104	3R_27480104_SNP [dm3] 3R_31654382_SNP [dm6]	G	A	2.654e^-4	1	INTRON kek6	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	9818966	X_9818966_SNP [dm3] X_9924933_SNP [dm6]	G	A	2.655e^-4	1	INTERGENIC
2R	10291222	2R_10291222_DEL [dm3] 2R_14403717_DEL [dm6]	AG	A	2.660e^-4	1	INTERGENIC
2L	13975613	2L_13975613_SNP [dm3] 2L_13975613_SNP [dm6]	A	T	2.662e^-4	1	SYNONYMOUS_CODING NimC1	TF binding site mE1_TFBS_chinmo
3R	26723235	3R_26723235_SNP [dm3] 3R_30897513_SNP [dm6]	C	T	2.665e^-4	1	SYNONYMOUS_CODING Cyp4c3
2L	14655540	2L_14655540_SNP [dm3] 2L_14655540_SNP [dm6]	T	C	2.668e^-4	1	INTRON osp
3L	5949291	3L_5949291_SNP [dm3] 3L_5956191_SNP [dm6]	A	T	2.670e^-4	1	INTERGENIC
2L	5924755	2L_5924755_SNP [dm3] 2L_5924755_SNP [dm6]	T	A	2.682e^-4	1	DOWNSTREAM CR43926 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5970913	X_5970913_SNP [dm3] X_6076880_SNP [dm6]	G	A	2.689e^-4	1	SYNONYMOUS_CODING CG4666
X	6024431	X_6024431_SNP [dm3] X_6130398_SNP [dm6]	T	C	2.695e^-4	1	INTRON Ca-alpha1T
3R	6522116	3R_6522116_DEL [dm3] 3R_10696394_DEL [dm6]	TTAGT	A	2.705e^-4	1	UPSTREAM pug & 1 other DOWNSTREAM Skeletor INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	14869293	2L_14869293_SNP [dm3] 2L_14869293_SNP [dm6]	A	T	2.712e^-4	1	INTERGENIC
3L	10478413	3L_10478413_SNP [dm3] 3L_10485313_SNP [dm6]	T	C	2.712e^-4	1	INTRON A2bp1
2L	5889040	2L_5889040_SNP [dm3] 2L_5889040_SNP [dm6]	T	A	2.718e^-4	1	DOWNSTREAM CR44578 INTERGENIC
2R	9816060	2R_9816060_SNP [dm3] 2R_13928555_SNP [dm6]	C	T	2.722e^-4	1	INTRON shot
2R	980525	2R_980525_SNP [dm3] 2R_5093020_SNP [dm6]	C	T	2.724e^-4	1	SYNONYMOUS_CODING CG3107	TF binding site BDTNP1_TFBS_twi
X	12587295	X_12587295_SNP [dm3] X_12693262_SNP [dm6]	T	G	2.724e^-4	1	SYNONYMOUS_CODING Smr	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	16660575	2R_16660575_SNP [dm3] 2R_20773070_SNP [dm6]	G	T	2.730e^-4	1	UPSTREAM CG13443 INTERGENIC
2R	16660611	2R_16660611_INS [dm3] 2R_20773106_INS [dm6]	T	TAGAATGCTGCA...	2.730e^-4	1	UPSTREAM CG13443 INTERGENIC
2R	8972281	2R_8972281_SNP [dm3] 2R_13084776_SNP [dm6]	G	A	2.738e^-4	1	INTERGENIC
3R	8410098	3R_8410098_SNP [dm3] 3R_12584376_SNP [dm6]	T	C	2.738e^-4	1	INTRON Octbeta2R
3L	5949292	3L_5949292_SNP [dm3] 3L_5956192_SNP [dm6]	T	C	2.747e^-4	1	INTERGENIC
2L	530374	2L_530374_SNP [dm3] 2L_530374_SNP [dm6]	C	A	2.749e^-4	1	INTRON ush	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
3L	13977934	3L_13977934_SNP [dm3] 3L_13984834_SNP [dm6]	C	T	2.756e^-4	1	INTRON CG17364
2L	18019060	2L_18019060_SNP [dm3] 2L_18019060_SNP [dm6]	T	G	2.757e^-4	1	INTRON rdo
4	313601	4_313601_SNP [dm3] 4_292975_SNP [dm6]	T	A	2.762e^-4	1	INTRON Syt7
2R	986092	2R_986092_SNP [dm3] 2R_5098587_SNP [dm6]	C	T	2.770e^-4	1	INTERGENIC	transposable element FlyBase
X	8207039	X_8207039_SNP [dm3] X_8313006_SNP [dm6]	C	T	2.772e^-4	1	INTRON nAChRalpha3	transposable element FlyBase
2L	20642284	2L_20642284_DEL [dm3] 2L_20642284_DEL [dm6]	AGCA	A	2.793e^-4	1	DOWNSTREAM CG17470 & 1 other INTERGENIC
2L	20657284	2L_20657284_SNP [dm3] 2L_20657284_SNP [dm6]	G	A	2.793e^-4	1	NON_SYNONYMOUS_CODING CG2614	TF binding site mE1_TFBS_sens
2R	19148129	2R_19148129_SNP [dm3] 2R_23260606_SNP [dm6]	T	G	2.797e^-4	1	INTERGENIC
3L	17421991	3L_17421991_SNP [dm3] 3L_17428891_SNP [dm6]	C	A	2.821e^-4	1	UPSTREAM CG33052 DOWNSTREAM CG32174 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	17422261	3L_17422261_SNP [dm3] 3L_17429161_SNP [dm6]	G	A	2.821e^-4	1	SYNONYMOUS_CODING CG32174 UTR_3_PRIME frc UPSTREAM CG33052	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	7126136	2R_7126136_SNP [dm3] 2R_11238631_SNP [dm6]	A	G	2.824e^-4	1	SYNONYMOUS_CODING CG13216 UPSTREAM CG34224 DOWNSTREAM CG13215	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_sens
2L	5618623	2L_5618623_SNP [dm3] 2L_5618623_SNP [dm6]	G	T	2.832e^-4	1	UPSTREAM CG14010 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	18856954	3L_18856954_SNP [dm3] 3L_18863854_SNP [dm6]	T	A	2.833e^-4	1	UPSTREAM CG6865 INTRON CG6865
3L	13823726	3L_13823726_SNP [dm3] 3L_13830626_SNP [dm6]	G	T	2.835e^-4	1	INTERGENIC
3L	1063808	3L_1063808_SNP [dm3] 3L_1063808_SNP [dm6]	G	A	2.840e^-4	1	INTRON bab1
3L	18970308	3L_18970308_SNP [dm3] 3L_18977208_SNP [dm6]	A	G	2.880e^-4	1	INTERGENIC
3L	2094521	3L_2094521_SNP [dm3] 3L_2094521_SNP [dm6]	C	A	2.902e^-4	1	INTRON sls
3L	18150956	3L_18150956_SNP [dm3] 3L_18157856_SNP [dm6]	C	T	2.907e^-4	1	INTRON CG13699	TF binding site mE1_TFBS_HSA
3R	27461446	3R_27461446_SNP [dm3] 3R_31635724_SNP [dm6]	T	C	2.915e^-4	1	INTRON kek6	TF binding site mE1_TFBS_chinmo
3L	2080984	3L_2080984_SNP [dm3] 3L_2080984_SNP [dm6]	T	G	2.925e^-4	1	SYNONYMOUS_CODING sls INTRON sls
2L	20637012	2L_20637012_SNP [dm3] 2L_20637012_SNP [dm6]	T	C	2.927e^-4	1	INTERGENIC	transposable element FlyBase
3R	4861956	3R_4861956_SNP [dm3] 3R_9036234_SNP [dm6]	C	G	2.947e^-4	1	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13490630	2L_13490630_SNP [dm3] 2L_13490630_SNP [dm6]	A	T	2.947e^-4	1	INTRON CG42784
3R	14780576	3R_14780576_SNP [dm3] 3R_18954854_SNP [dm6]	T	C	2.951e^-4	1	INTRON CG42613 & 1 other
2R	2442449	2R_2442449_SNP [dm3] 2R_6554944_SNP [dm6]	T	A	2.956e^-4	1	INTRON jing	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26070444	3R_26070444_SNP [dm3] 3R_30244722_SNP [dm6]	C	T	2.956e^-4	1	INTRON CG9733	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5966608	2L_5966608_SNP [dm3] 2L_5966608_SNP [dm6]	T	G	2.962e^-4	1	SYNONYMOUS_CODING CG13992	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	13359424	3R_13359424_SNP [dm3] 3R_17533702_SNP [dm6]	T	G	2.966e^-4	1	SYNONYMOUS_CODING CG5823	TF binding site BDTNP1_TFBS_dl
3L	2094206	3L_2094206_SNP [dm3] 3L_2094206_SNP [dm6]	T	A	2.969e^-4	1	INTRON sls
2R	983942	2R_983942_SNP [dm3] 2R_5096437_SNP [dm6]	T	C	2.974e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad transposable element FlyBase
2R	1041724	2R_1041724_SNP [dm3] 2R_5154219_SNP [dm6]	T	A	2.977e^-4	1	UTR_3_PRIME Atf6 DOWNSTREAM Atf6	transposable element FlyBase
3L	6112975	3L_6112975_SNP [dm3] 3L_6119875_SNP [dm6]	C	G	2.983e^-4	1	INTRON Ets65A	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	16735758	X_16735758_SNP [dm3] X_16841725_SNP [dm6]	T	A	2.994e^-4	1	INTRON RSG7	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12688472	3L_12688472_SNP [dm3] 3L_12695372_SNP [dm6]	G	A	2.997e^-4	1	INTRON mirr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	20652656	2L_20652656_SNP [dm3] 2L_20652656_SNP [dm6]	G	T	3.009e^-4	1	NON_SYNONYMOUS_CODING bru
3L	18591689	3L_18591689_SNP [dm3] 3L_18598589_SNP [dm6]	A	T	3.014e^-4	1	DOWNSTREAM CR45390 INTERGENIC
2R	19148131	2R_19148131_SNP [dm3] 2R_23260608_SNP [dm6]	A	C	3.028e^-4	1	INTERGENIC
2L	9591231	2L_9591231_SNP [dm3] 2L_9591231_SNP [dm6]	T	G	3.030e^-4	1	INTRON CG3841	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14248858	3L_14248858_INS [dm3] 3L_14255758_INS [dm6]	C	CC	3.030e^-4	1	INTERGENIC
2R	14281092	2R_14281092_SNP [dm3] 2R_18393587_SNP [dm6]	A	C	3.048e^-4	1	UPSTREAM Idgf5 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	8065711	X_8065711_SNP [dm3] X_8171678_SNP [dm6]	A	G	3.055e^-4	1	SYNONYMOUS_CODING slpr
3L	3282976	3L_3282976_DEL [dm3] 3L_3282976_DEL [dm6]	CCC	C	3.063e^-4	1	INTRON CG12017
3R	25478245	3R_25478245_SNP [dm3] 3R_29652523_SNP [dm6]	G	A	3.071e^-4	1	INTRON Dop1R2	TF binding site mE1_TFBS_chinmo
3L	17422031	3L_17422031_SNP [dm3] 3L_17428931_SNP [dm6]	T	A	3.081e^-4	1	UPSTREAM CG33052 DOWNSTREAM CG32174 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	17422034	3L_17422034_SNP [dm3] 3L_17428934_SNP [dm6]	C	A	3.081e^-4	1	UPSTREAM CG33052 DOWNSTREAM CG32174 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	19437083	3R_19437083_SNP [dm3] 3R_23611361_SNP [dm6]	T	C	3.091e^-4	1	INTRON CG31145
3L	18856943	3L_18856943_SNP [dm3] 3L_18863843_SNP [dm6]	A	T	3.103e^-4	1	UPSTREAM CG6865 INTRON CG6865
X	16602799	X_16602799_SNP [dm3] X_16708766_SNP [dm6]	A	C	3.104e^-4	1	INTRON CG4678	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6103673	3L_6103673_SNP [dm3] 3L_6110573_SNP [dm6]	A	G	3.107e^-4	1	UPSTREAM Ets65A INTRON Ets65A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2L	15267121	2L_15267121_SNP [dm3] 2L_15267121_SNP [dm6]	G	A	3.113e^-4	1	INTRON Cul3	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	15608551	3L_15608551_INS [dm3] 3L_15615451_INS [dm6]	C	CC	3.122e^-4	1	INTRON comm3
2L	17176860	2L_17176860_SNP [dm3] 2L_17176860_SNP [dm6]	G	T	3.145e^-4	1	SYNONYMOUS_CODING Gr36a DOWNSTREAM CR44394
X	8207057	X_8207057_SNP [dm3] X_8313024_SNP [dm6]	T	A	3.151e^-4	1	INTRON nAChRalpha3	transposable element FlyBase
2R	4897014	2R_4897014_SNP [dm3] 2R_9009509_SNP [dm6]	G	T	3.154e^-4	1	UPSTREAM CG8172 INTRON CG8172	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	12038934	X_12038934_SNP [dm3] X_12144901_SNP [dm6]	T	A	3.160e^-4	1	INTRON Ten-a
2L	17347791	2L_17347791_SNP [dm3] 2L_17347791_SNP [dm6]	C	A	3.161e^-4	1	INTERGENIC
X	6527297	X_6527297_SNP [dm3] X_6633264_SNP [dm6]	T	C	3.175e^-4	1	UPSTREAM CG14443 INTRON pigs	TF binding site mE1_TFBS_HSA
2R	995324	2R_995324_SNP [dm3] 2R_5107819_SNP [dm6]	G	T	3.185e^-4	1	INTERGENIC	transposable element FlyBase
3R	18330238	3R_18330238_SNP [dm3] 3R_22504516_SNP [dm6]	T	C	3.198e^-4	1	INTRON Octbeta1R	TF binding site mE1_TFBS_cad
3R	18330265	3R_18330265_SNP [dm3] 3R_22504543_SNP [dm6]	A	G	3.198e^-4	1	INTRON Octbeta1R
2R	3514491	2R_3514491_SNP [dm3] 2R_7626986_SNP [dm6]	G	A	3.202e^-4	1	NON_SYNONYMOUS_CODING CG43340	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2590796	2L_2590796_SNP [dm3] 2L_2590796_SNP [dm6]	T	G	3.203e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
2R	10791428	2R_10791428_SNP [dm3] 2R_14903923_SNP [dm6]	A	G	3.205e^-4	1	UPSTREAM CG10249 DOWNSTREAM Cyp317a1 INTRON CG10249
2L	14756968	2L_14756968_SNP [dm3] 2L_14756968_SNP [dm6]	T	A	3.221e^-4	1	INTERGENIC
3L	6780698	3L_6780698_SNP [dm3] 3L_6787598_SNP [dm6]	G	T	3.228e^-4	1	UPSTREAM CR45759 INTERGENIC
3L	15049784	3L_15049784_SNP [dm3] 3L_15056684_SNP [dm6]	G	A	3.256e^-4	1	INTRON Sytbeta
3L	5241782	3L_5241782_SNP [dm3] 3L_5248682_SNP [dm6]	T	C	3.258e^-4	1	UPSTREAM shep INTRON shep
2R	19481793	2R_19481793_SNP [dm3] 2R_23594270_SNP [dm6]	A	G	3.267e^-4	1	INTRON apt	TF binding site mE1_TFBS_sens
3L	18592329	3L_18592329_SNP [dm3] 3L_18599229_SNP [dm6]	C	T	3.273e^-4	1	DOWNSTREAM CR45390 & 2 others INTERGENIC
2R	17979568	2R_17979568_SNP [dm3] 2R_22092063_SNP [dm6]	C	T	3.281e^-4	1	SPLICE_SITE_ACCEPTOR CG11073 UPSTREAM CG44163 INTRON CG11073	TF binding site mE1_TFBS_chinmo
2L	20638426	2L_20638426_DEL [dm3] 2L_20638426_DEL [dm6]	ATTACTTGGAAAACCGTTTT...	A	3.293e^-4	1	UPSTREAM CR43158 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	8719404	2L_8719404_SNP [dm3] 2L_8719404_SNP [dm6]	T	A	3.303e^-4	1	INTRON raw
3L	10943126	3L_10943126_SNP [dm3] 3L_10950026_SNP [dm6]	G	T	3.304e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	22241066	X_22241066_SNP [dm3] X_22839230_SNP [dm6]	A	G	3.312e^-4	1	INTRON fog & 1 other
X	8207058	X_8207058_INS [dm3] X_8313025_INS [dm6]	T	TATA	3.316e^-4	1	INTRON nAChRalpha3	transposable element FlyBase
2L	16161680	2L_16161680_SNP [dm3] 2L_16161680_SNP [dm6]	A	C	3.323e^-4	1	INTERGENIC
2R	19705140	2R_19705140_SNP [dm3] 2R_23817617_SNP [dm6]	G	A	3.342e^-4	1	INTRON CG4797
2R	1016203	2R_1016203_SNP [dm3] 2R_5128698_SNP [dm6]	G	A	3.349e^-4	1	UPSTREAM gus INTRON CR43256	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14997972	2L_14997972_SNP [dm3] 2L_14997972_SNP [dm6]	C	A	3.355e^-4	1	UPSTREAM mol INTERGENIC
2R	9502577	2R_9502577_SNP [dm3] 2R_13615072_SNP [dm6]	C	G	3.367e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16659526	2R_16659526_SNP [dm3] 2R_20772021_SNP [dm6]	C	T	3.368e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	21104108	3R_21104108_SNP [dm3] 3R_25278386_SNP [dm6]	G	A	3.374e^-4	1	DOWNSTREAM CG10514 INTERGENIC
3L	3633973	3L_3633973_SNP [dm3] 3L_3633973_SNP [dm6]	A	G	3.380e^-4	1	INTRON dar1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	1289663	3L_1289663_SNP [dm3] 3L_1289663_SNP [dm6]	T	C	3.381e^-4	1	INTRON CG32333
3R	26954400	3R_26954400_SNP [dm3] 3R_31128678_SNP [dm6]	C	T	3.411e^-4	1	SYNONYMOUS_CODING CG15556
2R	11169846	2R_11169846_SNP [dm3] 2R_15282341_SNP [dm6]	G	A	3.411e^-4	1	INTRON Trpm
3L	754374	3L_754374_SNP [dm3] 3L_754374_SNP [dm6]	G	T	3.411e^-4	1	DOWNSTREAM emc INTRON hng3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	15428037	2R_15428037_SNP [dm3] 2R_19540532_SNP [dm6]	T	C	3.413e^-4	1	INTRON sm
3L	4448448	3L_4448448_SNP [dm3] 3L_4448448_SNP [dm6]	T	G	3.425e^-4	1	DOWNSTREAM CG12607 INTERGENIC
2L	12457614	2L_12457614_SNP [dm3] 2L_12457614_SNP [dm6]	C	A	3.425e^-4	1	UTR_3_PRIME bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5688615	X_5688615_SNP [dm3] X_5794582_SNP [dm6]	G	T	3.426e^-4	1	DOWNSTREAM CG12239 INTERGENIC
2L	15337740	2L_15337740_SNP [dm3] 2L_15337740_SNP [dm6]	C	T	3.445e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14379964	3R_14379964_INS [dm3] 3R_18554242_INS [dm6]	C	CACAAAAAAC	3.445e^-4	1	INTERGENIC
3R	10781364	3R_10781364_SNP [dm3] 3R_14955642_SNP [dm6]	A	C	3.445e^-4	1	INTERGENIC
3L	1946897	3L_1946897_SNP [dm3] 3L_1946897_SNP [dm6]	T	C	3.446e^-4	1	SYNONYMOUS_CODING mu2 UPSTREAM Cnb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	4185763	2R_4185763_SNP [dm3] 2R_8298258_SNP [dm6]	G	A	3.447e^-4	1	DOWNSTREAM mir-280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3972591	X_3972591_SNP [dm3] X_4078558_SNP [dm6]	G	A	3.449e^-4	1	NON_SYNONYMOUS_CODING CG43689	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12698306	3L_12698306_SNP [dm3] 3L_12705206_SNP [dm6]	T	A	3.453e^-4	1	INTRON mirr
3L	1841931	3L_1841931_SNP [dm3] 3L_1841931_SNP [dm6]	C	T	3.456e^-4	1	INTRON Cpr62Bc
X	16678618	X_16678618_SNP [dm3] X_16784585_SNP [dm6]	A	G	3.458e^-4	1	NON_SYNONYMOUS_CODING mRpL22 DOWNSTREAM CG9609	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	5820473	3L_5820473_SNP [dm3] 3L_5827373_SNP [dm6]	C	T	3.460e^-4	1	INTRON vn
2R	10323770	2R_10323770_SNP [dm3] 2R_14436265_SNP [dm6]	C	A	3.474e^-4	1	INTRON Oaz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	13497210	X_13497210_SNP [dm3] X_13603177_SNP [dm6]	A	T	3.502e^-4	1	UPSTREAM up INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17792794	2R_17792794_SNP [dm3] 2R_21905289_SNP [dm6]	G	C	3.514e^-4	1	INTRON Fili
3R	4891073	3R_4891073_SNP [dm3] 3R_9065351_SNP [dm6]	G	C	3.516e^-4	1	NON_SYNONYMOUS_CODING Ada UPSTREAM beag DOWNSTREAM pum	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	6629825	3R_6629825_SNP [dm3] 3R_10804103_SNP [dm6]	T	A	3.517e^-4	1	UPSTREAM CG14692 INTERGENIC
X	16735580	X_16735580_SNP [dm3] X_16841547_SNP [dm6]	T	G	3.519e^-4	1	INTRON RSG7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10430571	3R_10430571_SNP [dm3] 3R_14604849_SNP [dm6]	A	G	3.520e^-4	1	SYNONYMOUS_CODING stumps	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14869703	2L_14869703_SNP [dm3] 2L_14869703_SNP [dm6]	G	A	3.531e^-4	1	DOWNSTREAM CG4480 INTERGENIC
3L	11691200	3L_11691200_SNP [dm3] 3L_11698100_SNP [dm6]	C	T	3.539e^-4	1	SPLICE_SITE_REGION CG6053 INTRON CG6053	TF binding site mE1_TFBS_HSA
X	18010025	X_18010025_SNP [dm3] X_18115992_SNP [dm6]	G	A	3.542e^-4	1	INTRON wupA	regulatory region REDfly_CRMs
3L	18559139	3L_18559139_SNP [dm3] 3L_18566039_SNP [dm6]	G	A	3.545e^-4	1	INTRON AstC-R1
3L	11199683	3L_11199683_SNP [dm3] 3L_11206583_SNP [dm6]	G	A	3.557e^-4	1	UTR_3_PRIME Ube3a UPSTREAM Plod	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	9089495	2R_9089495_SNP [dm3] 2R_13201990_SNP [dm6]	A	G	3.570e^-4	1	SYNONYMOUS_CODING Aats-val DOWNSTREAM lat & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	5169961	2R_5169961_SNP [dm3] 2R_9282456_SNP [dm6]	G	T	3.583e^-4	1	INTRON Pkn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7310004	2R_7310004_SNP [dm3] 2R_11422499_SNP [dm6]	T	G	3.594e^-4	1	INTRON Drip
3R	10999016	3R_10999016_SNP [dm3] 3R_15173294_SNP [dm6]	G	T	3.596e^-4	1	DOWNSTREAM Mf INTRON Mf & 1 other
2L	15267085	2L_15267085_SNP [dm3] 2L_15267085_SNP [dm6]	A	G	3.596e^-4	1	INTRON Cul3	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	12522792	3L_12522792_SNP [dm3] 3L_12529692_SNP [dm6]	G	T	3.597e^-4	1	DOWNSTREAM Tsf2 INTRON nst	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17887043	2L_17887043_SNP [dm3] 2L_17887043_SNP [dm6]	A	G	3.608e^-4	1	INTERGENIC
2L	13062943	2L_13062943_SNP [dm3] 2L_13062943_SNP [dm6]	T	C	3.609e^-4	1	INTERGENIC
2R	9158063	2R_9158063_SNP [dm3] 2R_13270558_SNP [dm6]	C	T	3.619e^-4	1	INTRON Dh31-R
2R	2433232	2R_2433232_SNP [dm3] 2R_6545727_SNP [dm6]	T	C	3.622e^-4	1	INTRON jing
2L	5297563	2L_5297563_SNP [dm3] 2L_5297563_SNP [dm6]	A	G	3.624e^-4	1	INTRON vri EXON CR45730	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	12447647	2L_12447647_SNP [dm3] 2L_12447647_SNP [dm6]	C	T	3.625e^-4	1	SYNONYMOUS_CODING CG5421 UPSTREAM Oatp33Eb
3L	12522788	3L_12522788_SNP [dm3] 3L_12529688_SNP [dm6]	T	C	3.630e^-4	1	DOWNSTREAM Tsf2 INTRON nst	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11137897	2L_11137897_SNP [dm3] 2L_11137897_SNP [dm6]	T	C	3.630e^-4	1	SYNONYMOUS_CODING hgo DOWNSTREAM Gyc32E
2R	7105035	2R_7105035_SNP [dm3] 2R_11217530_SNP [dm6]	A	C	3.649e^-4	1	DOWNSTREAM shn INTRON CG9084
2R	7101925	2R_7101925_SNP [dm3] 2R_11214420_SNP [dm6]	T	C	3.653e^-4	1	SYNONYMOUS_CODING shn	TF binding site mE1_TFBS_cad
X	7275244	X_7275244_DEL [dm3] X_7381211_DEL [dm6]	AGAGTGCGCGCGAAGGATGA...	A	3.662e^-4	1	INTRON CG1677 & 1 other
2L	14425061	2L_14425061_SNP [dm3] 2L_14425061_SNP [dm6]	A	T	3.675e^-4	1	INTRON Cpr35B	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	19746476	2R_19746476_INS [dm3] 2R_23858953_INS [dm6]	T	TGTTA	3.684e^-4	1	UPSTREAM bgcn DOWNSTREAM TBPH INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	22236004	X_22236004_SNP [dm3] X_22834168_SNP [dm6]	G	A	3.694e^-4	1	UPSTREAM mir-2491 INTRON fog & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2R	3769181	2R_3769181_SNP [dm3] 2R_7881676_SNP [dm6]	C	T	3.700e^-4	1	INTRON Dgk
2R	8627824	2R_8627824_SNP [dm3] 2R_12740319_SNP [dm6]	G	A	3.715e^-4	1	INTRON CG42663
2L	9590091	2L_9590091_SNP [dm3] 2L_9590091_SNP [dm6]	A	T	3.725e^-4	1	SYNONYMOUS_CODING CG3841	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17261464	2L_17261464_SNP [dm3] 2L_17261464_SNP [dm6]	A	G	3.726e^-4	1	UPSTREAM beat-IIIc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10815137	3L_10815137_SNP [dm3] 3L_10822037_SNP [dm6]	A	G	3.726e^-4	1	INTERGENIC
3R	10743736	3R_10743736_SNP [dm3] 3R_14918014_SNP [dm6]	C	T	3.740e^-4	1	UPSTREAM Sdr INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	20650105	2L_20650105_SNP [dm3] 2L_20650105_SNP [dm6]	G	T	3.756e^-4	1	UPSTREAM CG2611 DOWNSTREAM bru & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11165731	2R_11165731_SNP [dm3] 2R_15278226_SNP [dm6]	G	A	3.756e^-4	1	SYNONYMOUS_CODING Trpm
3R	21855983	3R_21855983_SNP [dm3] 3R_26030261_SNP [dm6]	C	G	3.763e^-4	1	UPSTREAM E_spl_m5-HLH INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	17549081	3R_17549081_SNP [dm3] 3R_21723359_SNP [dm6]	A	G	3.773e^-4	1	DOWNSTREAM CR44096 INTERGENIC
2R	13960435	2R_13960435_DEL [dm3] 2R_18072930_DEL [dm6]	TCTTT	T	3.773e^-4	1	INTRON CG34386
2R	9799387	2R_9799387_SNP [dm3] 2R_13911882_SNP [dm6]	C	A	3.790e^-4	1	UPSTREAM shot INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	9799397	2R_9799397_SNP [dm3] 2R_13911892_SNP [dm6]	C	A	3.790e^-4	1	UPSTREAM shot INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	17629307	X_17629307_SNP [dm3] X_17735274_SNP [dm6]	A	G	3.816e^-4	1	INTRON CG42684	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	17629311	X_17629311_SNP [dm3] X_17735278_SNP [dm6]	C	A	3.816e^-4	1	INTRON CG42684	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	12702881	3L_12702881_SNP [dm3] 3L_12709781_SNP [dm6]	A	G	3.826e^-4	1	UTR_3_PRIME mirr DOWNSTREAM mirr	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	9521814	2R_9521814_SNP [dm3] 2R_13634309_SNP [dm6]	A	G	3.830e^-4	1	INTRON fas	TF binding site BDTNP1_TFBS_dl
3L	10289947	3L_10289947_SNP [dm3] 3L_10296847_SNP [dm6]	T	A	3.855e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13823711	3L_13823711_SNP [dm3] 3L_13830611_SNP [dm6]	C	A	3.859e^-4	1	INTERGENIC
2R	7442907	2R_7442907_SNP [dm3] 2R_11555402_SNP [dm6]	T	C	3.865e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2649895	2L_2649895_SNP [dm3] 2L_2649895_SNP [dm6]	G	A	3.867e^-4	1	SYNONYMOUS_CODING CG33125 UTR_3_PRIME CG33125
3L	6102332	3L_6102332_SNP [dm3] 3L_6109232_SNP [dm6]	T	G	3.867e^-4	1	INTRON Ets65A
2L	14056321	2L_14056321_SNP [dm3] 2L_14056321_SNP [dm6]	T	G	3.868e^-4	1	INTRON nAChRalpha5
3R	7634536	3R_7634536_SNP [dm3] 3R_11808814_SNP [dm6]	C	T	3.879e^-4	1	INTRON ClC-a	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2R	5424607	2R_5424607_SNP [dm3] 2R_9537102_SNP [dm6]	A	T	3.894e^-4	1	INTRON brp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3L	9305250	3L_9305250_SNP [dm3] 3L_9312150_SNP [dm6]	A	G	3.894e^-4	1	INTERGENIC
3L	10943223	3L_10943223_SNP [dm3] 3L_10950123_SNP [dm6]	T	A	3.896e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5893581	2L_5893581_SNP [dm3] 2L_5893581_SNP [dm6]	C	T	3.903e^-4	1	NON_SYNONYMOUS_CODING Acp26Aa UPSTREAM Acp26Ab
2R	8324174	2R_8324174_SNP [dm3] 2R_12436669_SNP [dm6]	T	A	3.908e^-4	1	SPLICE_SITE_REGION CG30051 UPSTREAM DUBAI & 1 other INTRON CG30051	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	8324176	2R_8324176_SNP [dm3] 2R_12436671_SNP [dm6]	T	A	3.908e^-4	1	UPSTREAM DUBAI & 1 other INTRON CG30051	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	11868795	3R_11868795_INS [dm3] 3R_16043073_INS [dm6]	T	AA	3.909e^-4	1	UPSTREAM CG10264 INTERGENIC
2L	5727356	2L_5727356_SNP [dm3] 2L_5727356_SNP [dm6]	A	T	3.926e^-4	1	UTR_3_PRIME CG14006 INTRON CG11030	TF binding site mE1_TFBS_cad
3R	8096493	3R_8096493_SNP [dm3] 3R_12270771_SNP [dm6]	T	A	3.927e^-4	1	UPSTREAM CG17738 DOWNSTREAM CR44039 INTRON svp	TF binding site mE1_TFBS_inv
2R	992155	2R_992155_SNP [dm3] 2R_5104650_SNP [dm6]	G	A	3.932e^-4	1	INTERGENIC	transposable element FlyBase
2L	8110849	2L_8110849_SNP [dm3] 2L_8110849_SNP [dm6]	C	T	3.948e^-4	1	UTR_3_PRIME Bsg	TF binding site BDTNP1_TFBS_dl
2L	18107467	2L_18107467_SNP [dm3] 2L_18107467_SNP [dm6]	C	T	3.953e^-4	1	INTERGENIC
2L	6263986	2L_6263986_SNP [dm3] 2L_6263986_SNP [dm6]	A	G	3.956e^-4	1	SYNONYMOUS_CODING CG13983 INTRON Ddr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6111500	3L_6111500_SNP [dm3] 3L_6118400_SNP [dm6]	G	A	3.959e^-4	1	INTRON Ets65A
3L	11211506	3L_11211506_SNP [dm3] 3L_11218406_SNP [dm6]	C	A	3.962e^-4	1	INTRON CG42671
2R	1544013	2R_1544013_SNP [dm3] 2R_5656508_SNP [dm6]	A	C	3.967e^-4	1	UTR_3_PRIME CG1344 & 1 other DOWNSTREAM Not3 & 1 other	TF binding site mE1_TFBS_HSA
X	3963121	X_3963121_SNP [dm3] X_4069088_SNP [dm6]	G	T	3.969e^-4	1	INTERGENIC
2L	21949810	2L_21949810_SNP [dm3] 2L_21949810_SNP [dm6]	C	A	3.974e^-4	1	DOWNSTREAM CR45704 INTERGENIC	transposable element FlyBase
3L	6293587	3L_6293587_SNP [dm3] 3L_6300487_SNP [dm6]	C	G	3.984e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10743746	3R_10743746_SNP [dm3] 3R_14918024_SNP [dm6]	A	C	3.990e^-4	1	UPSTREAM Sdr INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	2589429	2L_2589429_SNP [dm3] 2L_2589429_SNP [dm6]	A	T	3.995e^-4	1	INTERGENIC
3L	13823717	3L_13823717_SNP [dm3] 3L_13830617_SNP [dm6]	T	C	3.999e^-4	1	INTERGENIC
2R	6867746	2R_6867746_SNP [dm3] 2R_10980241_SNP [dm6]	T	C	4.010e^-4	1	UTR_3_PRIME luna
2R	6867748	2R_6867748_SNP [dm3] 2R_10980243_SNP [dm6]	C	G	4.010e^-4	1	UTR_3_PRIME luna
2R	20441335	2R_20441335_SNP [dm3] 2R_24553812_SNP [dm6]	T	G	4.012e^-4	1	INTRON CG4622 & 1 other
3R	13367908	3R_13367908_SNP [dm3] 3R_17542186_SNP [dm6]	T	C	4.018e^-4	1	INTRON SF1
2L	13062853	2L_13062853_SNP [dm3] 2L_13062853_SNP [dm6]	A	T	4.018e^-4	1	INTERGENIC
2L	13062907	2L_13062907_SNP [dm3] 2L_13062907_SNP [dm6]	G	T	4.018e^-4	1	INTERGENIC
2L	13062935	2L_13062935_DEL [dm3] 2L_13062935_DEL [dm6]	AAAATGA	A	4.018e^-4	1	INTERGENIC
3R	20569482	3R_20569482_SNP [dm3] 3R_24743760_SNP [dm6]	A	C	4.020e^-4	1	INTRON tok
3R	20236788	3R_20236788_SNP [dm3] 3R_24411066_SNP [dm6]	G	C	4.037e^-4	1	INTRON nAChRalpha1
2L	3413437	2L_3413437_SNP [dm3] 2L_3413437_SNP [dm6]	A	G	4.041e^-4	1	INTRON pgant2
2R	7523320	2R_7523320_DEL [dm3] 2R_11635815_DEL [dm6]	CG	C	4.043e^-4	1	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	16429619	X_16429619_SNP [dm3] X_16535586_SNP [dm6]	G	A	4.056e^-4	1	INTERGENIC
2R	966128	2R_966128_SNP [dm3] 2R_5078623_SNP [dm6]	A	C	4.064e^-4	1	INTERGENIC	transposable element FlyBase
2R	10615861	2R_10615861_SNP [dm3] 2R_14728356_SNP [dm6]	A	C	4.070e^-4	1	INTERGENIC
3L	1944517	3L_1944517_SNP [dm3] 3L_1944517_SNP [dm6]	T	C	4.078e^-4	1	SYNONYMOUS_CODING mu2
3L	12069867	3L_12069867_SNP [dm3] 3L_12076767_SNP [dm6]	C	T	4.085e^-4	1	INTRON Sema-5c
2L	13490816	2L_13490816_SNP [dm3] 2L_13490816_SNP [dm6]	G	A	4.097e^-4	1	INTRON CG42784
X	16428039	X_16428039_SNP [dm3] X_16534006_SNP [dm6]	C	A	4.111e^-4	1	UPSTREAM para INTERGENIC
3L	12522766	3L_12522766_SNP [dm3] 3L_12529666_SNP [dm6]	A	G	4.115e^-4	1	DOWNSTREAM Tsf2 INTRON nst	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9427908	3L_9427908_SNP [dm3] 3L_9434808_SNP [dm6]	G	T	4.122e^-4	1	NON_SYNONYMOUS_CODING CG42526 UPSTREAM MTF-1 INTRON MTF-1
3R	5100403	3R_5100403_SNP [dm3] 3R_9274681_SNP [dm6]	C	A	4.138e^-4	1	INTERGENIC
2R	8928229	2R_8928229_SNP [dm3] 2R_13040724_SNP [dm6]	C	T	4.148e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16327175	3L_16327175_SNP [dm3] 3L_16334075_SNP [dm6]	T	A	4.149e^-4	1	DOWNSTREAM CG13056 INTERGENIC
3R	13371776	3R_13371776_SNP [dm3] 3R_17546054_SNP [dm6]	A	G	4.151e^-4	1	SPLICE_SITE_REGION Prx3 DOWNSTREAM SF1 INTRON Prx3	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	4197317	2L_4197317_SNP [dm3] 2L_4197317_SNP [dm6]	G	A	4.169e^-4	1	START_GAINED CG3714 UTR_5_PRIME CG3714 INTRON CG3714	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
X	15267429	X_15267429_SNP [dm3] X_15373396_SNP [dm6]	T	A	4.179e^-4	1	INTRON acj6	TF binding site BDTNP1_TFBS_dl
2L	11891490	2L_11891490_INS [dm3] 2L_11891490_INS [dm6]	G	GG	4.188e^-4	1	INTRON Pde1c
3R	11656912	3R_11656912_SNP [dm3] 3R_15831190_SNP [dm6]	T	G	4.193e^-4	1	SYNONYMOUS_CODING rec DOWNSTREAM CG4576	TF binding site mE1_TFBS_sens
3R	10186623	3R_10186623_SNP [dm3] 3R_14360901_SNP [dm6]	C	T	4.201e^-4	1	SYNONYMOUS_CODING CG31320 INTRON NK7.1
3L	6113322	3L_6113322_SNP [dm3] 3L_6120222_SNP [dm6]	A	T	4.217e^-4	1	INTRON Ets65A	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	26322948	3R_26322948_SNP [dm3] 3R_30497226_SNP [dm6]	C	A	4.219e^-4	1	SYNONYMOUS_CODING PH4alphaNE1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9098691	2R_9098691_SNP [dm3] 2R_13211186_SNP [dm6]	A	G	4.223e^-4	1	UPSTREAM CG34312 DOWNSTREAM FLASH INTRON CG30058 & 2 others
3R	12948000	3R_12948000_SNP [dm3] 3R_17122278_SNP [dm6]	C	G	4.227e^-4	1	DOWNSTREAM CG42779 INTRON cher	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9681919	2L_9681919_DEL [dm3] 2L_9681919_DEL [dm6]	AA	A	4.228e^-4	1	DOWNSTREAM Pka-C1 INTERGENIC
2L	5962143	2L_5962143_SNP [dm3] 2L_5962143_SNP [dm6]	G	C	4.233e^-4	1	DOWNSTREAM psd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18107460	2L_18107460_SNP [dm3] 2L_18107460_SNP [dm6]	G	T	4.240e^-4	1	INTERGENIC
2L	15346841	2L_15346841_SNP [dm3] 2L_15346841_SNP [dm6]	A	G	4.252e^-4	1	INTERGENIC
2L	15346842	2L_15346842_SNP [dm3] 2L_15346842_SNP [dm6]	A	G	4.252e^-4	1	INTERGENIC
3L	16443907	3L_16443907_SNP [dm3] 3L_16450807_SNP [dm6]	C	A	4.252e^-4	1	SYNONYMOUS_CODING dsx-c73A INTRON CG33158	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14009907	3R_14009907_SNP [dm3] 3R_18184185_SNP [dm6]	C	T	4.253e^-4	1	SYNONYMOUS_CODING CG7208 UPSTREAM cdm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	1947203	3L_1947203_SNP [dm3] 3L_1947203_SNP [dm6]	G	T	4.264e^-4	1	SYNONYMOUS_CODING mu2 UPSTREAM Cnb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25558055	3R_25558055_SNP [dm3] 3R_29732333_SNP [dm6]	T	A	4.266e^-4	1	SYNONYMOUS_CODING Kul UTR_3_PRIME Kul	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1217903	2L_1217903_SNP [dm3] 2L_1217903_SNP [dm6]	A	G	4.273e^-4	1	UPSTREAM CR43263 INTERGENIC
2R	8619062	2R_8619062_SNP [dm3] 2R_12731557_SNP [dm6]	T	A	4.277e^-4	1	INTRON CG42663	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	9376172	3L_9376172_SNP [dm3] 3L_9383072_SNP [dm6]	G	A	4.285e^-4	1	UPSTREAM Hsp27 DOWNSTREAM Hsp23 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	7906105	3L_7906105_SNP [dm3] 3L_7913005_SNP [dm6]	C	T	4.286e^-4	1	SYNONYMOUS_CODING CG8281 DOWNSTREAM CG8111	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_sens
2R	9158129	2R_9158129_SNP [dm3] 2R_13270624_SNP [dm6]	A	G	4.297e^-4	1	INTRON Dh31-R
2L	6272257	2L_6272257_SNP [dm3] 2L_6272257_SNP [dm6]	C	A	4.304e^-4	1	DOWNSTREAM CR42735 INTRON Ddr
2L	4816356	2L_4816356_SNP [dm3] 2L_4816356_SNP [dm6]	C	T	4.313e^-4	1	SYNONYMOUS_CODING CG3225 DOWNSTREAM CG15629	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	18548530	3R_18548530_SNP [dm3] 3R_22722808_SNP [dm6]	C	G	4.314e^-4	1	SYNONYMOUS_CODING Irp-1A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	14429579	2L_14429579_SNP [dm3] 2L_14429579_SNP [dm6]	T	G	4.329e^-4	1	EXON CR44732	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
X	14235893	X_14235893_SNP [dm3] X_14341860_SNP [dm6]	A	G	4.329e^-4	1	INTRON dpr8
3L	18856959	3L_18856959_SNP [dm3] 3L_18863859_SNP [dm6]	G	A	4.333e^-4	1	UPSTREAM CG6865 INTRON CG6865
2L	20642276	2L_20642276_SNP [dm3] 2L_20642276_SNP [dm6]	A	G	4.336e^-4	1	DOWNSTREAM CG17470 & 1 other INTERGENIC
2L	20642282	2L_20642282_SNP [dm3] 2L_20642282_SNP [dm6]	G	A	4.336e^-4	1	DOWNSTREAM CG17470 & 1 other INTERGENIC
2L	20642283	2L_20642283_SNP [dm3] 2L_20642283_SNP [dm6]	A	T	4.336e^-4	1	DOWNSTREAM CG17470 & 1 other INTERGENIC
2L	20645564	2L_20645564_SNP [dm3] 2L_20645564_SNP [dm6]	A	T	4.336e^-4	1	UPSTREAM CG2608 & 1 other INTRON phr6-4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	20650179	2L_20650179_SNP [dm3] 2L_20650179_SNP [dm6]	G	A	4.336e^-4	1	UPSTREAM CG2611 DOWNSTREAM bru & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20658748	2L_20658748_SNP [dm3] 2L_20658748_SNP [dm6]	C	T	4.336e^-4	1	SYNONYMOUS_CODING CG2614 DOWNSTREAM CG31678
3L	9358415	3L_9358415_SNP [dm3] 3L_9365315_SNP [dm6]	G	T	4.343e^-4	1	DOWNSTREAM CG4447 INTRON Klp67A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9428237	2R_9428237_SNP [dm3] 2R_13540732_SNP [dm6]	T	C	4.346e^-4	1	UTR_5_PRIME CG6145 INTRON CG6145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
X	22241017	X_22241017_SNP [dm3] X_22839181_SNP [dm6]	T	C	4.358e^-4	1	INTRON fog & 1 other
2R	1816416	2R_1816416_SNP [dm3] 2R_5928911_SNP [dm6]	A	C	4.358e^-4	1	NON_SYNONYMOUS_CODING CG43366
3L	16330197	3L_16330197_SNP [dm3] 3L_16337097_SNP [dm6]	T	A	4.362e^-4	1	INTERGENIC
2L	5893760	2L_5893760_SNP [dm3] 2L_5893760_SNP [dm6]	C	T	4.363e^-4	1	NON_SYNONYMOUS_CODING Acp26Aa UPSTREAM Acp26Ab
3L	10695992	3L_10695992_DEL [dm3] 3L_10702892_DEL [dm6]	AAGCTCTGA	T	4.395e^-4	1	INTERGENIC
X	22039005	X_22039005_SNP [dm3] X_22637169_SNP [dm6]	C	G	4.397e^-4	1	INTERGENIC
3R	10251483	3R_10251483_SNP [dm3] 3R_14425761_SNP [dm6]	C	G	4.406e^-4	1	INTRON cv-c
4	382038	4_382038_SNP [dm3] 4_361412_SNP [dm6]	T	G	4.413e^-4	1	INTRON Hcf
3L	18563929	3L_18563929_SNP [dm3] 3L_18570829_SNP [dm6]	A	C	4.413e^-4	1	INTRON AstC-R1
2L	14351947	2L_14351947_SNP [dm3] 2L_14351947_SNP [dm6]	C	A	4.422e^-4	1	UPSTREAM CG43052 & 1 other DOWNSTREAM l_2_34Fd INTERGENIC
2L	4094516	2L_4094516_SNP [dm3] 2L_4094516_SNP [dm6]	C	T	4.427e^-4	1	INTRON ed	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8065795	X_8065795_SNP [dm3] X_8171762_SNP [dm6]	G	A	4.453e^-4	1	SYNONYMOUS_CODING slpr	TF binding site mE1_TFBS_chinmo
2L	5618622	2L_5618622_SNP [dm3] 2L_5618622_SNP [dm6]	T	C	4.457e^-4	1	UPSTREAM CG14010 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	4892062	3R_4892062_INS [dm3] 3R_9066340_INS [dm6]	T	TGTATT	4.473e^-4	1	DOWNSTREAM pum & 1 other INTERGENIC
2L	15648278	2L_15648278_SNP [dm3] 2L_15648278_SNP [dm6]	T	G	4.474e^-4	1	INTRON CG4587
2L	7021091	2L_7021091_SNP [dm3] 2L_7021091_SNP [dm6]	T	C	4.475e^-4	1	UPSTREAM Pcp INTRON ade3
2L	13975735	2L_13975735_SNP [dm3] 2L_13975735_SNP [dm6]	C	T	4.477e^-4	1	NON_SYNONYMOUS_CODING NimC1	TF binding site mE1_TFBS_chinmo
2L	12826960	2L_12826960_SNP [dm3] 2L_12826960_SNP [dm6]	A	T	4.492e^-4	1	INTERGENIC
2L	290790	2L_290790_SNP [dm3] 2L_290790_SNP [dm6]	G	T	4.496e^-4	1	INTRON CG3625
2R	9010154	2R_9010154_SNP [dm3] 2R_13122649_SNP [dm6]	A	G	4.498e^-4	1	START_GAINED CG13325 UTR_5_PRIME CG13325 UPSTREAM CG13325
2R	16664508	2R_16664508_SNP [dm3] 2R_20777003_SNP [dm6]	G	A	4.499e^-4	1	SYNONYMOUS_CODING CG43710 UPSTREAM CG43709	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	20661659	2L_20661659_SNP [dm3] 2L_20661659_SNP [dm6]	T	C	4.503e^-4	1	INTRON CG31678
3L	11183897	3L_11183897_SNP [dm3] 3L_11190797_SNP [dm6]	T	A	4.509e^-4	1	INTRON GlcAT-P
2L	9981583	2L_9981583_SNP [dm3] 2L_9981583_SNP [dm6]	C	T	4.519e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	14424533	3L_14424533_SNP [dm3] 3L_14431433_SNP [dm6]	G	T	4.522e^-4	1	INTRON bbg
2R	6052464	2R_6052464_SNP [dm3] 2R_10164959_SNP [dm6]	C	A	4.528e^-4	1	INTRON KCNQ	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12422663	2R_12422663_DEL [dm3] 2R_16535158_DEL [dm6]	TGT	T	4.535e^-4	1	UTR_5_PRIME loopin-1 INTRON loopin-1
2L	21900629	2L_21900629_SNP [dm3] 2L_21900629_SNP [dm6]	A	G	4.548e^-4	1	INTERGENIC	transposable element FlyBase
2R	3767795	2R_3767795_SNP [dm3] 2R_7880290_SNP [dm6]	A	G	4.565e^-4	1	INTRON Dgk
2R	990916	2R_990916_SNP [dm3] 2R_5103411_SNP [dm6]	G	A	4.571e^-4	1	INTERGENIC	transposable element FlyBase
3R	22099175	3R_22099175_SNP [dm3] 3R_26273453_SNP [dm6]	A	T	4.588e^-4	1	INTRON CG6154
3R	18721961	3R_18721961_SNP [dm3] 3R_22896239_SNP [dm6]	G	T	4.597e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8097461	3R_8097461_SNP [dm3] 3R_12271739_SNP [dm6]	G	A	4.628e^-4	1	DOWNSTREAM CG17738 INTRON svp	TF binding site mE1_TFBS_inv
3L	16435910	3L_16435910_SNP [dm3] 3L_16442810_SNP [dm6]	T	C	4.631e^-4	1	INTRON CG33158 & 1 other
2R	7105012	2R_7105012_SNP [dm3] 2R_11217507_SNP [dm6]	G	A	4.633e^-4	1	DOWNSTREAM shn INTRON CG9084
2L	5961323	2L_5961323_SNP [dm3] 2L_5961323_SNP [dm6]	A	T	4.644e^-4	1	UPSTREAM Vm26Aa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	5385727	3R_5385727_SNP [dm3] 3R_9560005_SNP [dm6]	T	C	4.652e^-4	1	SYNONYMOUS_CODING MBD-like UPSTREAM AP-1mu	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	16074799	3R_16074799_DEL [dm3] 3R_20249077_DEL [dm6]	CCAAAAATAAACACGAAA...	C	4.659e^-4	1	INTERGENIC
3L	18949250	3L_18949250_SNP [dm3] 3L_18956150_SNP [dm6]	C	T	4.669e^-4	1	DOWNSTREAM CG6836 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	11168159	X_11168159_SNP [dm3] X_11274126_SNP [dm6]	C	T	4.670e^-4	1	INTRON CG44422
2R	1127593	2R_1127593_SNP [dm3] 2R_5240088_SNP [dm6]	G	T	4.674e^-4	1	INTRON Nipped-A	transposable element FlyBase
2L	10789978	2L_10789978_SNP [dm3] 2L_10789978_SNP [dm6]	T	G	4.677e^-4	1	UPSTREAM CG31870 INTRON CG31869
3R	10743821	3R_10743821_SNP [dm3] 3R_14918099_SNP [dm6]	T	A	4.679e^-4	1	UPSTREAM Sdr INTERGENIC	TF binding site mE1_TFBS_inv
2L	14026277	2L_14026277_SNP [dm3] 2L_14026277_SNP [dm6]	T	C	4.680e^-4	1	UPSTREAM CG4500 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_zfh1
2L	1217817	2L_1217817_SNP [dm3] 2L_1217817_SNP [dm6]	T	G	4.693e^-4	1	UPSTREAM CR43263 INTERGENIC
2L	15161009	2L_15161009_SNP [dm3] 2L_15161009_SNP [dm6]	G	C	4.702e^-4	1	UPSTREAM CR44771 DOWNSTREAM CG4168 EXON CR44770
3L	8317207	3L_8317207_SNP [dm3] 3L_8324107_SNP [dm6]	A	T	4.708e^-4	1	INTERGENIC
2R	19177689	2R_19177689_SNP [dm3] 2R_23290166_SNP [dm6]	A	T	4.716e^-4	1	DOWNSTREAM CR44783 INTERGENIC
3R	21855980	3R_21855980_SNP [dm3] 3R_26030258_SNP [dm6]	A	G	4.721e^-4	1	UPSTREAM E_spl_m5-HLH INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	20920101	3L_20920101_SNP [dm3] 3L_20927001_SNP [dm6]	C	G	4.722e^-4	1	UPSTREAM CG10589 INTRON fng
3L	10478434	3L_10478434_SNP [dm3] 3L_10485334_SNP [dm6]	G	T	4.731e^-4	1	INTRON A2bp1
2R	10805909	2R_10805909_SNP [dm3] 2R_14918404_SNP [dm6]	G	T	4.740e^-4	1	INTRON CG10249
2L	17117713	2L_17117713_SNP [dm3] 2L_17117713_SNP [dm6]	A	C	4.749e^-4	1	INTERGENIC
3L	11032565	3L_11032565_SNP [dm3] 3L_11039465_SNP [dm6]	T	C	4.759e^-4	1	INTRON CG43693
2R	17027158	2R_17027158_DEL [dm3] 2R_21139653_DEL [dm6]	CTCCAAACC	C	4.761e^-4	1	UTR_5_PRIME Magi INTRON Magi
3R	15892690	3R_15892690_SNP [dm3] 3R_20066968_SNP [dm6]	G	A	4.769e^-4	1	INTERGENIC
3R	21197364	3R_21197364_SNP [dm3] 3R_25371642_SNP [dm6]	G	A	4.770e^-4	1	INTRON Fur1
2L	17887080	2L_17887080_SNP [dm3] 2L_17887080_SNP [dm6]	A	G	4.770e^-4	1	INTERGENIC
4	293967	4_293967_SNP [dm3] 4_273341_SNP [dm6]	A	T	4.783e^-4	1	SYNONYMOUS_CODING NfI	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	272939	2L_272939_SNP [dm3] 2L_272939_SNP [dm6]	C	T	4.785e^-4	1	SYNONYMOUS_CODING mbm UPSTREAM CG11555	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	2549123	3L_2549123_SNP [dm3] 3L_2549123_SNP [dm6]	T	A	4.786e^-4	1	INTRON Spn
2L	17347808	2L_17347808_SNP [dm3] 2L_17347808_SNP [dm6]	A	T	4.789e^-4	1	INTERGENIC
3R	17946752	3R_17946752_SNP [dm3] 3R_22121030_SNP [dm6]	A	G	4.792e^-4	1	INTRON CG42390
2R	9799496	2R_9799496_SNP [dm3] 2R_13911991_SNP [dm6]	A	G	4.801e^-4	1	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	19026930	2R_19026930_SNP [dm3] 2R_23139407_SNP [dm6]	A	T	4.812e^-4	1	DOWNSTREAM CG30192 INTRON CG13544
2L	16012156	2L_16012156_SNP [dm3] 2L_16012156_SNP [dm6]	G	A	4.821e^-4	1	INTRON beat-Ic
2L	13497076	2L_13497076_SNP [dm3] 2L_13497076_SNP [dm6]	G	A	4.828e^-4	1	INTRON CG42784	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	7344161	3R_7344161_SNP [dm3] 3R_11518439_SNP [dm6]	A	G	4.836e^-4	1	INTERGENIC
2L	6050632	2L_6050632_SNP [dm3] 2L_6050632_SNP [dm6]	G	T	4.842e^-4	1	UPSTREAM CG9135 DOWNSTREAM CG12393 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	3237858	X_3237858_SNP [dm3] X_3343825_SNP [dm6]	A	T	4.854e^-4	1	DOWNSTREAM dnc INTRON CR44886	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_zfh1
X	16735488	X_16735488_DEL [dm3] X_16841455_DEL [dm6]	AATAATCAAAGCGCATTTAA...	G	4.863e^-4	1	INTRON RSG7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7523266	2R_7523266_SNP [dm3] 2R_11635761_SNP [dm6]	A	G	4.864e^-4	1	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
3L	1666504	3L_1666504_SNP [dm3] 3L_1666504_SNP [dm6]	A	G	4.879e^-4	1	UTR_3_PRIME CG7974 DOWNSTREAM snoRNA:Me28S-A2634b & 3 others INTRON Uhg7 EXON snoRNA:Me28S-A2634c	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_zfh1
2R	997991	2R_997991_SNP [dm3] 2R_5110486_SNP [dm6]	T	C	4.888e^-4	1	INTERGENIC
2L	6050857	2L_6050857_SNP [dm3] 2L_6050857_SNP [dm6]	C	A	4.891e^-4	1	UTR_5_PRIME CG9135 DOWNSTREAM CG12393	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	12855843	X_12855843_SNP [dm3] X_12961810_SNP [dm6]	G	A	4.900e^-4	1	INTERGENIC
3R	12748534	3R_12748534_SNP [dm3] 3R_16922812_SNP [dm6]	C	G	4.906e^-4	1	EXON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	18040257	X_18040257_SNP [dm3] X_18146224_SNP [dm6]	T	G	4.925e^-4	1	INTERGENIC
2R	17710752	2R_17710752_SNP [dm3] 2R_21823247_SNP [dm6]	G	A	4.931e^-4	1	SYNONYMOUS_CODING CG13492	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18856123	3R_18856123_SNP [dm3] 3R_23030401_SNP [dm6]	G	C	4.935e^-4	1	INTERGENIC
2L	4639607	2L_4639607_SNP [dm3] 2L_4639607_SNP [dm6]	G	T	4.945e^-4	1	INTERGENIC
2R	9428234	2R_9428234_SNP [dm3] 2R_13540729_SNP [dm6]	T	G	4.949e^-4	1	UTR_5_PRIME CG6145 INTRON CG6145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2R	17494913	2R_17494913_SNP [dm3] 2R_21607408_SNP [dm6]	G	T	4.953e^-4	1	UPSTREAM CR43243 & 1 other DOWNSTREAM CG15673 INTRON CG10433	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	18855268	3R_18855268_SNP [dm3] 3R_23029546_SNP [dm6]	A	G	4.955e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
3L	14599002	3L_14599002_INS [dm3] 3L_14605902_INS [dm6]	T	TTATTATATTTACTATTGTT...	4.970e^-4	1	INTERGENIC
2R	7122270	2R_7122270_SNP [dm3] 2R_11234765_SNP [dm6]	T	A	4.983e^-4	1	UPSTREAM CG13227 DOWNSTREAM CG13228 INTERGENIC
2L	10535532	2L_10535532_SNP [dm3] 2L_10535532_SNP [dm6]	C	T	4.987e^-4	1	SYNONYMOUS_CODING CG18302
2R	7437136	2R_7437136_SNP [dm3] 2R_11549631_SNP [dm6]	G	A	4.990e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_cad
X	8207007	X_8207007_SNP [dm3] X_8312974_SNP [dm6]	G	A	4.998e^-4	1	INTRON nAChRalpha3	transposable element FlyBase
3L	2947482	3L_2947482_SNP [dm3] 3L_2947482_SNP [dm6]	C	A	5.001e^-4	1	INTRON Shab
2L	1421114	2L_1421114_SNP [dm3] 2L_1421114_SNP [dm6]	C	T	5.006e^-4	1	UPSTREAM lea INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	7946596	3R_7946596_SNP [dm3] 3R_12120874_SNP [dm6]	A	T	5.013e^-4	1	DOWNSTREAM CG4702 INTERGENIC	TF binding site BDTNP1_TFBS_ftz
2R	1127562	2R_1127562_SNP [dm3] 2R_5240057_SNP [dm6]	A	C	5.014e^-4	1	INTRON Nipped-A	transposable element FlyBase
2L	12719998	2L_12719998_SNP [dm3] 2L_12719998_SNP [dm6]	T	C	5.014e^-4	1	INTRON CG5792 & 1 other	TF binding site mE1_TFBS_sens
2R	20566569	2R_20566569_SNP [dm3] 2R_24679046_SNP [dm6]	G	A	5.015e^-4	1	INTRON Mmp1
2R	5869578	2R_5869578_SNP [dm3] 2R_9982073_SNP [dm6]	A	G	5.041e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12723526	2R_12723526_SNP [dm3] 2R_16836021_SNP [dm6]	A	T	5.051e^-4	1	EXON CR43650
3R	26950216	3R_26950216_SNP [dm3] 3R_31124494_SNP [dm6]	C	T	5.058e^-4	1	INTERGENIC
2R	9905718	2R_9905718_DEL [dm3] 2R_14018213_DEL [dm6]	TGGAAACAGTAACTTTACAG...	T	5.071e^-4	1	INTRON mam
2L	17606502	2L_17606502_SNP [dm3] 2L_17606502_SNP [dm6]	T	A	5.071e^-4	1	EXON CR44412
2L	15549346	2L_15549346_SNP [dm3] 2L_15549346_SNP [dm6]	T	G	5.075e^-4	1	UPSTREAM CR45728 INTERGENIC
3L	2682196	3L_2682196_SNP [dm3] 3L_2682196_SNP [dm6]	A	G	5.085e^-4	1	INTRON Fife
3L	15049777	3L_15049777_MNP [dm3] 3L_15056677_MNP [dm6]	TGATT	AACAA	5.087e^-4	1	INTRON Sytbeta
X	2376965	X_2376965_SNP [dm3] X_2482932_SNP [dm6]	A	G	5.094e^-4	1	INTRON trol	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11065957	3L_11065957_SNP [dm3] 3L_11072857_SNP [dm6]	C	T	5.095e^-4	1	SYNONYMOUS_CODING Mocs1 UTR_3_PRIME Mocs1 DOWNSTREAM l_3_01239	TF binding site mE1_TFBS_sens
X	14460387	X_14460387_SNP [dm3] X_14566354_SNP [dm6]	A	G	5.096e^-4	1	INTERGENIC
4	118590	4_118590_SNP [dm3] 4_97964_SNP [dm6]	C	T	5.097e^-4	1	NON_SYNONYMOUS_CODING pan INTRON pan
2R	19177624	2R_19177624_SNP [dm3] 2R_23290101_SNP [dm6]	C	T	5.100e^-4	1	DOWNSTREAM CR44783 INTERGENIC
X	22199804	X_22199804_SNP [dm3] X_22797968_SNP [dm6]	A	G	5.107e^-4	1	DOWNSTREAM CR44997 INTERGENIC
3L	6104491	3L_6104491_SNP [dm3] 3L_6111391_SNP [dm6]	A	C	5.108e^-4	1	UPSTREAM Ets65A INTRON Ets65A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16074818	3R_16074818_SNP [dm3] 3R_20249096_SNP [dm6]	A	T	5.109e^-4	1	INTERGENIC
2L	4709942	2L_4709942_SNP [dm3] 2L_4709942_SNP [dm6]	A	T	5.111e^-4	1	INTRON CG34351	TF binding site mE1_TFBS_chinmo
2R	7526025	2R_7526025_DEL [dm3] 2R_11638520_DEL [dm6]	CACTTATGGC	C	5.116e^-4	1	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	18021443	2L_18021443_SNP [dm3] 2L_18021443_SNP [dm6]	A	C	5.119e^-4	1	INTRON rdo
4	472260	4_472260_SNP [dm3] 4_451634_SNP [dm6]	A	T	5.122e^-4	1	INTRON CaMKI
2L	17347884	2L_17347884_DEL [dm3] 2L_17347884_DEL [dm6]	TA	T	5.122e^-4	1	INTERGENIC
4	498251	4_498251_SNP [dm3] 4_477625_SNP [dm6]	G	T	5.126e^-4	1	SYNONYMOUS_CODING Asator
2L	2057288	2L_2057288_SNP [dm3] 2L_2057288_SNP [dm6]	A	T	5.139e^-4	1	INTRON Or22c
3L	14724019	3L_14724019_SNP [dm3] 3L_14730919_SNP [dm6]	G	A	5.156e^-4	1	INTRON ome
X	6727002	X_6727002_SNP [dm3] X_6832969_SNP [dm6]	C	T	5.158e^-4	1	UPSTREAM CG12796 INTRON nonC	TF binding site mE1_TFBS_cad
2L	13975610	2L_13975610_SNP [dm3] 2L_13975610_SNP [dm6]	T	G	5.163e^-4	1	SYNONYMOUS_CODING NimC1	TF binding site mE1_TFBS_chinmo
2R	6363666	2R_6363666_DEL [dm3] 2R_10476161_DEL [dm6]	AA	A	5.181e^-4	1	UPSTREAM whd INTRON whd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	7906853	3L_7906853_SNP [dm3] 3L_7913753_SNP [dm6]	C	T	5.188e^-4	1	UTR_3_PRIME CG8281 & 1 other	TF binding site mE1_TFBS_chinmo
2L	20655965	2L_20655965_SNP [dm3] 2L_20655965_SNP [dm6]	C	A	5.204e^-4	1	UTR_5_PRIME bru UPSTREAM CG2614	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	8065229	3R_8065229_SNP [dm3] 3R_12239507_SNP [dm6]	C	A	5.208e^-4	1	UPSTREAM CR44036 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	9990775	3L_9990775_SNP [dm3] 3L_9997675_SNP [dm6]	A	T	5.209e^-4	1	INTRON dpr6
3R	26080688	3R_26080688_SNP [dm3] 3R_30254966_SNP [dm6]	A	T	5.217e^-4	1	DOWNSTREAM CG18404 INTERGENIC
2L	17117714	2L_17117714_SNP [dm3] 2L_17117714_SNP [dm6]	A	C	5.223e^-4	1	INTERGENIC
X	13396304	X_13396304_SNP [dm3] X_13502271_SNP [dm6]	T	C	5.231e^-4	1	INTRON Neto
2R	11830197	2R_11830197_INS [dm3] 2R_15942692_INS [dm6]	C	CGC	5.256e^-4	1	UPSTREAM Cyp4aa1 INTERGENIC
3L	6100993	3L_6100993_SNP [dm3] 3L_6107893_SNP [dm6]	G	A	5.258e^-4	1	INTRON Ets65A	TF binding site mE1_TFBS_cad
X	5970640	X_5970640_SNP [dm3] X_6076607_SNP [dm6]	C	T	5.262e^-4	1	SYNONYMOUS_CODING CG4666
2L	16133068	2L_16133068_SNP [dm3] 2L_16133068_SNP [dm6]	G	A	5.265e^-4	1	UPSTREAM CG4892 INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13074576	2R_13074576_SNP [dm3] 2R_17187071_SNP [dm6]	C	A	5.271e^-4	1	DOWNSTREAM CR44388 INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	9158034	2R_9158034_SNP [dm3] 2R_13270529_SNP [dm6]	T	C	5.274e^-4	1	INTRON Dh31-R
2R	7138535	2R_7138535_SNP [dm3] 2R_11251030_SNP [dm6]	C	T	5.281e^-4	1	SYNONYMOUS_CODING Or47a DOWNSTREAM Cpr47Ea
2R	12323054	2R_12323054_SNP [dm3] 2R_16435549_SNP [dm6]	C	T	5.291e^-4	1	SYNONYMOUS_CODING CG7848
X	4216132	X_4216132_SNP [dm3] X_4322099_SNP [dm6]	C	A	5.300e^-4	1	SYNONYMOUS_CODING mRpL33 UPSTREAM norpA DOWNSTREAM CG2982	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	10839993	3L_10839993_SNP [dm3] 3L_10846893_SNP [dm6]	T	C	5.303e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	15791963	3L_15791963_SNP [dm3] 3L_15798863_SNP [dm6]	G	A	5.304e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	20258676	X_20258676_SNP [dm3] X_20387649_SNP [dm6]	G	A	5.310e^-4	1	INTERGENIC
3R	20720723	3R_20720723_SNP [dm3] 3R_24895001_SNP [dm6]	G	A	5.312e^-4	1	UPSTREAM CG31121 INTRON CG11069	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	13890528	3L_13890528_SNP [dm3] 3L_13897428_SNP [dm6]	G	T	5.327e^-4	1	INTRON dysc
X	14756603	X_14756603_INS [dm3] X_14862570_INS [dm6]	T	TT	5.327e^-4	1	DOWNSTREAM CG9518 INTRON Flo2
X	7973034	X_7973034_SNP [dm3] X_8079001_SNP [dm6]	C	T	5.336e^-4	1	DOWNSTREAM CG1571 INTRON CG2254
3R	21784145	3R_21784145_SNP [dm3] 3R_25958423_SNP [dm6]	C	A	5.336e^-4	1	UPSTREAM CG14540 INTERGENIC
2L	20659924	2L_20659924_SNP [dm3] 2L_20659924_SNP [dm6]	G	C	5.336e^-4	1	NON_SYNONYMOUS_CODING CG31678 DOWNSTREAM CG2614	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16527889	2R_16527889_SNP [dm3] 2R_20640384_SNP [dm6]	A	G	5.349e^-4	1	SYNONYMOUS_CODING rig UPSTREAM maf-S	TF binding site BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
X	4733697	X_4733697_SNP [dm3] X_4839664_SNP [dm6]	C	G	5.356e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	5368387	3R_5368387_SNP [dm3] 3R_9542665_SNP [dm6]	C	T	5.361e^-4	1	NON_SYNONYMOUS_CODING mura INTRON mura	TF binding site mE1_TFBS_HSA
3L	7065961	3L_7065961_SNP [dm3] 3L_7072861_SNP [dm6]	A	C	5.374e^-4	1	DOWNSTREAM CG34030 INTRON CG8641	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	9490676	2R_9490676_SNP [dm3] 2R_13603171_SNP [dm6]	C	A	5.380e^-4	1	INTERGENIC
2R	2409735	2R_2409735_SNP [dm3] 2R_6522230_SNP [dm6]	G	A	5.385e^-4	1	INTRON jing
3L	6265669	3L_6265669_INS [dm3] 3L_6272569_INS [dm6]	G	GAAAAG	5.390e^-4	1	INTERGENIC
3L	6265672	3L_6265672_SNP [dm3] 3L_6272572_SNP [dm6]	T	G	5.390e^-4	1	INTERGENIC
3R	22098401	3R_22098401_SNP [dm3] 3R_26272679_SNP [dm6]	T	A	5.399e^-4	1	INTRON CG6154
X	10085893	X_10085893_SNP [dm3] X_10191860_SNP [dm6]	A	G	5.400e^-4	1	SYNONYMOUS_CODING CG43902 INTRON CR44894
2L	12665680	2L_12665680_SNP [dm3] 2L_12665680_SNP [dm6]	A	C	5.432e^-4	1	INTRON pdm2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9089396	2R_9089396_SNP [dm3] 2R_13201891_SNP [dm6]	A	G	5.434e^-4	1	SYNONYMOUS_CODING Aats-val DOWNSTREAM lat & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8215623	2L_8215623_SNP [dm3] 2L_8215623_SNP [dm6]	A	T	5.443e^-4	1	UPSTREAM CG8349 DOWNSTREAM CG8353 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
X	8799112	X_8799112_SNP [dm3] X_8905079_SNP [dm6]	A	G	5.451e^-4	1	SYNONYMOUS_CODING e_r_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	13567025	2L_13567025_DEL [dm3] 2L_13567025_DEL [dm6]	AA	A	5.461e^-4	1	INTRON kuz
2R	17710023	2R_17710023_SNP [dm3] 2R_21822518_SNP [dm6]	G	A	5.464e^-4	1	SYNONYMOUS_CODING CG13492	TF binding site mE1_TFBS_chinmo
3L	17822827	3L_17822827_INS [dm3] 3L_17829727_INS [dm6]	A	AA	5.474e^-4	1	INTRON Grd
2L	5894185	2L_5894185_SNP [dm3] 2L_5894185_SNP [dm6]	A	C	5.477e^-4	1	UPSTREAM Acp26Aa INTERGENIC
3L	14259540	3L_14259540_SNP [dm3] 3L_14266440_SNP [dm6]	G	A	5.480e^-4	1	INTERGENIC
2R	19746468	2R_19746468_DEL [dm3] 2R_23858945_DEL [dm6]	AACATACT	A	5.481e^-4	1	UPSTREAM bgcn DOWNSTREAM TBPH INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	18853245	3L_18853245_SNP [dm3] 3L_18860145_SNP [dm6]	T	G	5.482e^-4	1	UPSTREAM mir-315 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	6364130	2R_6364130_SNP [dm3] 2R_10476625_SNP [dm6]	T	A	5.493e^-4	1	INTRON whd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
3R	12417124	3R_12417124_INS [dm3] 3R_16591402_INS [dm6]	C	CGGCAGC	5.494e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	8619279	X_8619279_DEL [dm3] X_8725246_DEL [dm6]	AAAGCATTT	A	5.503e^-4	1	INTRON CR43297	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	8206956	X_8206956_SNP [dm3] X_8312923_SNP [dm6]	T	A	5.519e^-4	1	INTRON nAChRalpha3	transposable element FlyBase
2R	8916911	2R_8916911_SNP [dm3] 2R_13029406_SNP [dm6]	C	A	5.519e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	16909538	X_16909538_SNP [dm3] X_17015505_SNP [dm6]	T	G	5.521e^-4	1	INTRON CG45002
3R	7946826	3R_7946826_SNP [dm3] 3R_12121104_SNP [dm6]	A	T	5.534e^-4	1	DOWNSTREAM CG4702 INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
2R	19026924	2R_19026924_SNP [dm3] 2R_23139401_SNP [dm6]	A	C	5.539e^-4	1	DOWNSTREAM CG30192 INTRON CG13544
2L	20808511	2L_20808511_SNP [dm3] 2L_20808511_SNP [dm6]	G	T	5.543e^-4	1	INTRON CG9328
3L	18591677	3L_18591677_SNP [dm3] 3L_18598577_SNP [dm6]	T	C	5.551e^-4	1	DOWNSTREAM CR45390 INTERGENIC
2R	990917	2R_990917_SNP [dm3] 2R_5103412_SNP [dm6]	C	T	5.570e^-4	1	INTERGENIC	transposable element FlyBase
4	167786	4_167786_SNP [dm3] 4_147160_SNP [dm6]	C	A	5.571e^-4	1	INTERGENIC	transposable element FlyBase
3L	12522768	3L_12522768_SNP [dm3] 3L_12529668_SNP [dm6]	A	C	5.574e^-4	1	DOWNSTREAM Tsf2 INTRON nst	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8097408	3R_8097408_SNP [dm3] 3R_12271686_SNP [dm6]	C	T	5.575e^-4	1	DOWNSTREAM CG17738 INTRON svp	TF binding site mE1_TFBS_inv
2R	9340750	2R_9340750_SNP [dm3] 2R_13453245_SNP [dm6]	A	G	5.584e^-4	1	UTR_3_PRIME cbs DOWNSTREAM arr	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
3L	3874467	3L_3874467_SNP [dm3] 3L_3874467_SNP [dm6]	A	T	5.594e^-4	1	INTERGENIC
3R	26811988	3R_26811988_SNP [dm3] 3R_30986266_SNP [dm6]	T	C	5.607e^-4	1	INTRON 5-HT7
2L	5892426	2L_5892426_SNP [dm3] 2L_5892426_SNP [dm6]	A	T	5.611e^-4	1	UTR_3_PRIME Acp26Ab DOWNSTREAM Acp26Aa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	8619291	X_8619291_SNP [dm3] X_8725258_SNP [dm6]	T	A	5.615e^-4	1	INTRON CR43297	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16620035	2R_16620035_SNP [dm3] 2R_20732530_SNP [dm6]	G	T	5.629e^-4	1	INTRON dpr
3R	10158165	3R_10158165_SNP [dm3] 3R_14332443_SNP [dm6]	G	C	5.630e^-4	1	INTRON NK7.1
2L	14363628	2L_14363628_SNP [dm3] 2L_14363628_SNP [dm6]	C	A	5.632e^-4	1	NON_SYNONYMOUS_CODING spel1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	8206971	X_8206971_SNP [dm3] X_8312938_SNP [dm6]	A	T	5.640e^-4	1	INTRON nAChRalpha3	transposable element FlyBase
2L	10127201	2L_10127201_DEL [dm3] 2L_10127201_DEL [dm6]	GG	G	5.647e^-4	1	INTRON CG44153
3R	6952710	3R_6952710_SNP [dm3] 3R_11126988_SNP [dm6]	A	G	5.650e^-4	1	NON_SYNONYMOUS_CODING Ugt86Dd
2L	13291512	2L_13291512_SNP [dm3] 2L_13291512_SNP [dm6]	T	A	5.655e^-4	1	INTRON CG31729	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	18472699	3R_18472699_SNP [dm3] 3R_22646977_SNP [dm6]	T	A	5.663e^-4	1	INTRON CG45058
2R	9691050	2R_9691050_SNP [dm3] 2R_13803545_SNP [dm6]	A	G	5.666e^-4	1	INTRON Cpr50Cb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14865854	2R_14865854_SNP [dm3] 2R_18978349_SNP [dm6]	G	C	5.671e^-4	1	SYNONYMOUS_CODING CG18605	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17309144	2R_17309144_INS [dm3] 2R_21421639_INS [dm6]	T	TGTTT	5.673e^-4	1	INTRON Sdc
2R	5123941	2R_5123941_SNP [dm3] 2R_9236436_SNP [dm6]	A	T	5.679e^-4	1	INTRON hig
2R	16677761	2R_16677761_SNP [dm3] 2R_20790256_SNP [dm6]	A	T	5.689e^-4	1	UTR_3_PRIME CG43677 UPSTREAM CG43667
2L	8838791	2L_8838791_SNP [dm3] 2L_8838791_SNP [dm6]	C	T	5.691e^-4	1	INTERGENIC
2L	16633932	2L_16633932_SNP [dm3] 2L_16633932_SNP [dm6]	T	C	5.718e^-4	1	INTRON CG42389
3L	556422	3L_556422_SNP [dm3] 3L_556422_SNP [dm6]	T	G	5.721e^-4	1	INTRON hipk	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	17179712	X_17179712_SNP [dm3] X_17285679_SNP [dm6]	T	A	5.729e^-4	1	DOWNSTREAM Fim INTRON CG5445	TF binding site BDTNP1_TFBS_dl
2L	20640992	2L_20640992_SNP [dm3] 2L_20640992_SNP [dm6]	T	C	5.732e^-4	1	DOWNSTREAM CG31680 INTRON Sfp38D
X	13863597	X_13863597_SNP [dm3] X_13969564_SNP [dm6]	G	C	5.740e^-4	1	INTRON mamo
2L	9011927	2L_9011927_SNP [dm3] 2L_9011927_SNP [dm6]	A	G	5.743e^-4	1	UPSTREAM CG13102 DOWNSTREAM CG9568 & 1 other INTERGENIC
3R	6247944	3R_6247944_SNP [dm3] 3R_10422222_SNP [dm6]	T	C	5.745e^-4	1	INTERGENIC
3L	16435901	3L_16435901_SNP [dm3] 3L_16442801_SNP [dm6]	T	C	5.749e^-4	1	INTRON CG33158 & 1 other
2L	20655064	2L_20655064_SNP [dm3] 2L_20655064_SNP [dm6]	C	A	5.757e^-4	1	NON_SYNONYMOUS_CODING bru	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	1813473	2R_1813473_SNP [dm3] 2R_5925968_SNP [dm6]	T	G	5.765e^-4	1	NON_SYNONYMOUS_CODING CG43366	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	14460422	X_14460422_SNP [dm3] X_14566389_SNP [dm6]	A	G	5.765e^-4	1	INTERGENIC
2R	2443624	2R_2443624_INS [dm3] 2R_6556119_INS [dm6]	A	AA	5.766e^-4	1	INTRON jing	TF binding site mE1_TFBS_sens
2R	19921738	2R_19921738_SNP [dm3] 2R_24034215_SNP [dm6]	C	T	5.774e^-4	1	UTR_5_PRIME MAN1 UPSTREAM MAN1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	9691052	2R_9691052_SNP [dm3] 2R_13803547_SNP [dm6]	T	A	5.779e^-4	1	INTRON Cpr50Cb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	22198433	X_22198433_INS [dm3] X_22796597_INS [dm6]	T	TATATTCCGGCAT...	5.783e^-4	1	INTRON CR44997
2L	16759235	2L_16759235_SNP [dm3] 2L_16759235_SNP [dm6]	G	A	5.783e^-4	1	SYNONYMOUS_CODING ppk17 DOWNSTREAM yellow-b
2L	3680755	2L_3680755_SNP [dm3] 2L_3680755_SNP [dm6]	T	C	5.783e^-4	1	INTRON CG34340
2L	8215620	2L_8215620_SNP [dm3] 2L_8215620_SNP [dm6]	A	G	5.784e^-4	1	UPSTREAM CG8349 DOWNSTREAM CG8353 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	21104148	3R_21104148_SNP [dm3] 3R_25278426_SNP [dm6]	T	A	5.787e^-4	1	DOWNSTREAM CG10514 INTERGENIC
2L	20654288	2L_20654288_SNP [dm3] 2L_20654288_SNP [dm6]	C	T	5.794e^-4	1	SYNONYMOUS_CODING bru	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo
2R	1797606	2R_1797606_SNP [dm3] 2R_5910101_SNP [dm6]	C	G	5.794e^-4	1	INTRON CG43366
3L	1941270	3L_1941270_SNP [dm3] 3L_1941270_SNP [dm6]	C	T	5.830e^-4	1	UPSTREAM CR44536 INTRON Mfap1	TF binding site mE1_TFBS_cad
3R	20569389	3R_20569389_SNP [dm3] 3R_24743667_SNP [dm6]	T	C	5.830e^-4	1	INTRON tok
3L	16330140	3L_16330140_SNP [dm3] 3L_16337040_SNP [dm6]	T	C	5.831e^-4	1	INTERGENIC
3L	6101433	3L_6101433_SNP [dm3] 3L_6108333_SNP [dm6]	A	T	5.838e^-4	1	INTRON Ets65A	TF binding site mE1_TFBS_cad
3L	1137120	3L_1137120_SNP [dm3] 3L_1137120_SNP [dm6]	A	G	5.839e^-4	1	INTERGENIC
2R	19026923	2R_19026923_SNP [dm3] 2R_23139400_SNP [dm6]	G	T	5.848e^-4	1	DOWNSTREAM CG30192 INTRON CG13544
2R	8870914	2R_8870914_SNP [dm3] 2R_12983409_SNP [dm6]	C	T	5.848e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	22907513	3R_22907513_SNP [dm3] 3R_27081791_SNP [dm6]	C	T	5.851e^-4	1	SYNONYMOUS_CODING CG14257 INTRON CG14257	TF binding site mE1_TFBS_chinmo
X	8652612	X_8652612_SNP [dm3] X_8758579_SNP [dm6]	C	T	5.859e^-4	1	INTRON Lim1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	4594381	2L_4594381_SNP [dm3] 2L_4594381_SNP [dm6]	T	A	5.861e^-4	1	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	8638208	X_8638208_SNP [dm3] X_8744175_SNP [dm6]	G	T	5.865e^-4	1	INTERGENIC
2L	20726754	2L_20726754_SNP [dm3] 2L_20726754_SNP [dm6]	T	A	5.876e^-4	1	UPSTREAM CG9316 DOWNSTREAM CG9317 INTERGENIC
X	14460374	X_14460374_SNP [dm3] X_14566341_SNP [dm6]	T	C	5.889e^-4	1	INTERGENIC
3L	9358303	3L_9358303_SNP [dm3] 3L_9365203_SNP [dm6]	C	T	5.908e^-4	1	UTR_3_PRIME CG4447 INTRON Klp67A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	17629247	X_17629247_SNP [dm3] X_17735214_SNP [dm6]	A	C	5.919e^-4	1	SYNONYMOUS_CODING CG42684 INTRON CG42684	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9304334	3L_9304334_SNP [dm3] 3L_9311234_SNP [dm6]	C	T	5.921e^-4	1	INTERGENIC
2L	4741186	2L_4741186_SNP [dm3] 2L_4741186_SNP [dm6]	C	G	5.935e^-4	1	INTRON CG15630
X	16279537	X_16279537_SNP [dm3] X_16385504_SNP [dm6]	C	A	5.959e^-4	1	UTR_5_PRIME CG4239 UPSTREAM CG9992 & 1 other INTRON CG4239	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	16932949	X_16932949_SNP [dm3] X_17038916_SNP [dm6]	A	G	5.964e^-4	1	INTRON CG45002
3L	18847208	3L_18847208_SNP [dm3] 3L_18854108_SNP [dm6]	T	C	5.964e^-4	1	UPSTREAM CR45387 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19646464	2R_19646464_SNP [dm3] 2R_23758941_SNP [dm6]	T	A	5.996e^-4	1	INTRON CG9850	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	22099248	3R_22099248_SNP [dm3] 3R_26273526_SNP [dm6]	T	A	6.004e^-4	1	INTRON CG6154
3L	1551833	3L_1551833_SNP [dm3] 3L_1551833_SNP [dm6]	T	A	6.026e^-4	1	INTRON Cct1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10840024	3L_10840024_INS [dm3] 3L_10846924_INS [dm6]	A	AT	6.028e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	17547852	2L_17547852_SNP [dm3] 2L_17547852_SNP [dm6]	G	A	6.033e^-4	1	DOWNSTREAM CR45697 INTERGENIC
3L	6602942	3L_6602942_SNP [dm3] 3L_6609842_SNP [dm6]	C	T	6.039e^-4	1	UTR_5_PRIME CG8398 UPSTREAM CR45418 INTRON CG8398	TF binding site mE1_TFBS_inv
2L	2689227	2L_2689227_SNP [dm3] 2L_2689227_SNP [dm6]	A	C	6.049e^-4	1	INTRON CG31690
2R	16685905	2R_16685905_SNP [dm3] 2R_20798400_SNP [dm6]	C	T	6.072e^-4	1	INTERGENIC
3L	10841067	3L_10841067_SNP [dm3] 3L_10847967_SNP [dm6]	G	A	6.076e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	15878122	3R_15878122_SNP [dm3] 3R_20052400_SNP [dm6]	T	C	6.082e^-4	1	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
2L	6555014	2L_6555014_SNP [dm3] 2L_6555014_SNP [dm6]	G	T	6.085e^-4	1	DOWNSTREAM Osm6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13312609	2L_13312609_SNP [dm3] 2L_13312609_SNP [dm6]	A	G	6.086e^-4	1	INTRON CG43778
2R	4088193	2R_4088193_SNP [dm3] 2R_8200688_SNP [dm6]	A	T	6.087e^-4	1	INTRON LRP1
3R	27442277	3R_27442277_SNP [dm3] 3R_31616555_SNP [dm6]	T	C	6.088e^-4	1	UPSTREAM CG11539 INTRON CG1792	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	4633092	2L_4633092_SNP [dm3] 2L_4633092_SNP [dm6]	C	T	6.099e^-4	1	DOWNSTREAM CR45452 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	17600886	2L_17600886_SNP [dm3] 2L_17600886_SNP [dm6]	A	G	6.113e^-4	1	INTRON Sytalpha
X	2528712	X_2528712_SNP [dm3] X_2634679_SNP [dm6]	C	T	6.116e^-4	1	INTRON sgg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
3L	15429965	3L_15429965_SNP [dm3] 3L_15436865_SNP [dm6]	T	A	6.146e^-4	1	UPSTREAM CR43625 INTERGENIC
2L	13256151	2L_13256151_SNP [dm3] 2L_13256151_SNP [dm6]	A	G	6.149e^-4	1	SYNONYMOUS_CODING CG31728	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12638743	3L_12638743_SNP [dm3] 3L_12645643_SNP [dm6]	T	A	6.151e^-4	1	EXON CR32111
2R	7523180	2R_7523180_SNP [dm3] 2R_11635675_SNP [dm6]	T	A	6.157e^-4	1	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
3R	7947259	3R_7947259_INS [dm3] 3R_12121537_INS [dm6]	A	AT	6.185e^-4	1	DOWNSTREAM CG4702 INTERGENIC	TF binding site BDTNP1_TFBS_ftz
2R	14943021	2R_14943021_SNP [dm3] 2R_19055516_SNP [dm6]	T	C	6.193e^-4	1	SYNONYMOUS_CODING CG15116
2L	5893627	2L_5893627_SNP [dm3] 2L_5893627_SNP [dm6]	C	G	6.200e^-4	1	SYNONYMOUS_CODING Acp26Aa UPSTREAM Acp26Ab
2R	19976085	2R_19976085_DEL [dm3] 2R_24088562_DEL [dm6]	TTT	A	6.211e^-4	1	INTRON snama	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15116854	2R_15116854_SNP [dm3] 2R_19229349_SNP [dm6]	C	T	6.216e^-4	1	DOWNSTREAM CG7137 INTRON cora	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14424134	2L_14424134_SNP [dm3] 2L_14424134_SNP [dm6]	A	G	6.224e^-4	1	DOWNSTREAM Cpr35B INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	6999398	2L_6999398_SNP [dm3] 2L_6999398_SNP [dm6]	A	T	6.239e^-4	1	INTRON uif
X	14512200	X_14512200_SNP [dm3] X_14618167_SNP [dm6]	G	A	6.241e^-4	1	INTRON NetA
2R	17309136	2R_17309136_SNP [dm3] 2R_21421631_SNP [dm6]	T	A	6.244e^-4	1	INTRON Sdc
3L	9300540	3L_9300540_DEL [dm3] 3L_9307440_DEL [dm6]	GAGGGGCGGAGGAAGA...	G	6.246e^-4	1	INTERGENIC
3L	12522804	3L_12522804_SNP [dm3] 3L_12529704_SNP [dm6]	A	C	6.262e^-4	1	DOWNSTREAM Tsf2 INTRON nst	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13101476	3L_13101476_SNP [dm3] 3L_13108376_SNP [dm6]	A	T	6.282e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
X	12160754	X_12160754_SNP [dm3] X_12266721_SNP [dm6]	A	C	6.286e^-4	1	INTRON Ten-a	TF binding site mE1_TFBS_inv
2R	10097403	2R_10097403_SNP [dm3] 2R_14209898_SNP [dm6]	A	T	6.294e^-4	1	INTRON Sox15	regulatory region REDfly_CRMs
2L	2612324	2L_2612324_SNP [dm3] 2L_2612324_SNP [dm6]	G	C	6.299e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	6739397	3L_6739397_SNP [dm3] 3L_6746297_SNP [dm6]	C	T	6.311e^-4	1	SYNONYMOUS_CODING velo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	12856647	X_12856647_SNP [dm3] X_12962614_SNP [dm6]	C	T	6.337e^-4	1	INTERGENIC
3R	19365186	3R_19365186_SNP [dm3] 3R_23539464_SNP [dm6]	T	G	6.341e^-4	1	UPSTREAM CG10168 INTERGENIC
2L	14351784	2L_14351784_SNP [dm3] 2L_14351784_SNP [dm6]	A	T	6.346e^-4	1	UPSTREAM CG43052 & 1 other DOWNSTREAM l_2_34Fd INTERGENIC
2R	1031414	2R_1031414_SNP [dm3] 2R_5143909_SNP [dm6]	G	T	6.365e^-4	1	UPSTREAM Atf6 INTERGENIC	transposable element FlyBase
2L	5618608	2L_5618608_SNP [dm3] 2L_5618608_SNP [dm6]	A	T	6.367e^-4	1	UPSTREAM CG14010 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17492385	2R_17492385_SNP [dm3] 2R_21604880_SNP [dm6]	T	C	6.368e^-4	1	UPSTREAM CR45150 DOWNSTREAM CG10433 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8562118	3R_8562118_SNP [dm3] 3R_12736396_SNP [dm6]	A	C	6.376e^-4	1	INTERGENIC
2L	5716559	2L_5716559_SNP [dm3] 2L_5716559_SNP [dm6]	G	A	6.389e^-4	1	UPSTREAM CG34011 DOWNSTREAM CR44818 INTRON CG14007
2R	14955406	2R_14955406_SNP [dm3] 2R_19067901_SNP [dm6]	T	C	6.390e^-4	1	INTRON 5-HT1A
2R	11372152	2R_11372152_SNP [dm3] 2R_15484647_SNP [dm6]	G	A	6.408e^-4	1	INTERGENIC	TF binding site mE1_TFBS_Trl
X	13259722	X_13259722_SNP [dm3] X_13365689_SNP [dm6]	T	C	6.421e^-4	1	SYNONYMOUS_CODING Syt12	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16557874	2R_16557874_SNP [dm3] 2R_20670369_SNP [dm6]	A	G	6.433e^-4	1	UTR_5_PRIME exu UPSTREAM CG30152	TF binding site BDTNP1_TFBS_dl
2L	5895970	2L_5895970_DEL [dm3] 2L_5895970_DEL [dm6]	TTCTGGTCTGAT...	T	6.434e^-4	1	INTERGENIC
2L	15985048	2L_15985048_SNP [dm3] 2L_15985048_SNP [dm6]	A	G	6.442e^-4	1	INTERGENIC
2L	17567607	2L_17567607_SNP [dm3] 2L_17567607_SNP [dm6]	G	C	6.462e^-4	1	INTERGENIC
2R	4619334	2R_4619334_SNP [dm3] 2R_8731829_SNP [dm6]	G	A	6.464e^-4	1	INTRON stmA
2R	12493303	2R_12493303_SNP [dm3] 2R_16605798_SNP [dm6]	G	A	6.464e^-4	1	INTERGENIC
2L	5960996	2L_5960996_SNP [dm3] 2L_5960996_SNP [dm6]	G	A	6.470e^-4	1	UPSTREAM Vm26Aa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	16776034	3L_16776034_SNP [dm3] 3L_16782934_SNP [dm6]	T	C	6.484e^-4	1	UPSTREAM CG9706 DOWNSTREAM CG9705 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl
3R	21854081	3R_21854081_DEL [dm3] 3R_26028359_DEL [dm6]	GA	G	6.492e^-4	1	DOWNSTREAM E_spl_m5-HLH INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	7947111	3R_7947111_SNP [dm3] 3R_12121389_SNP [dm6]	A	G	6.496e^-4	1	DOWNSTREAM CG4702 INTERGENIC	TF binding site BDTNP1_TFBS_ftz
X	20910550	X_20910550_SNP [dm3] X_21039523_SNP [dm6]	C	T	6.502e^-4	1	UTR_3_PRIME Ntf-2 & 1 other DOWNSTREAM Ntf-2
2R	10089397	2R_10089397_SNP [dm3] 2R_14201892_SNP [dm6]	T	C	6.510e^-4	1	SYNONYMOUS_CODING Sox15 UPSTREAM VGAT	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2161834	3L_2161834_SNP [dm3] 3L_2161834_SNP [dm6]	G	A	6.532e^-4	1	UTR_5_PRIME CG15822
2L	5605599	2L_5605599_SNP [dm3] 2L_5605599_SNP [dm6]	G	A	6.535e^-4	1	INTRON CG14010
2R	20544210	2R_20544210_SNP [dm3] 2R_24656687_SNP [dm6]	C	A	6.548e^-4	1	INTERGENIC
X	8652572	X_8652572_DEL [dm3] X_8758539_DEL [dm6]	TA	T	6.549e^-4	1	INTRON Lim1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	8652575	X_8652575_SNP [dm3] X_8758542_SNP [dm6]	G	A	6.549e^-4	1	INTRON Lim1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	8652584	X_8652584_SNP [dm3] X_8758551_SNP [dm6]	C	A	6.549e^-4	1	INTRON Lim1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	8652628	X_8652628_SNP [dm3] X_8758595_SNP [dm6]	A	G	6.549e^-4	1	INTRON Lim1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	15006328	X_15006328_SNP [dm3] X_15112295_SNP [dm6]	T	A	6.556e^-4	1	UTR_3_PRIME Rab3-GEF
X	16577009	X_16577009_SNP [dm3] X_16682976_SNP [dm6]	C	A	6.567e^-4	1	INTRON Axs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9358421	3L_9358421_SNP [dm3] 3L_9365321_SNP [dm6]	G	T	6.569e^-4	1	DOWNSTREAM CG4447 INTRON Klp67A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	17670709	3R_17670709_SNP [dm3] 3R_21844987_SNP [dm6]	A	G	6.577e^-4	1	SYNONYMOUS_CODING Gr93c UPSTREAM CR44087 DOWNSTREAM Gr93d
2R	1016525	2R_1016525_SNP [dm3] 2R_5129020_SNP [dm6]	G	A	6.580e^-4	1	UPSTREAM gus EXON CR43256
3L	1990247	3L_1990247_SNP [dm3] 3L_1990247_SNP [dm6]	A	G	6.600e^-4	1	INTERGENIC
2L	7003935	2L_7003935_SNP [dm3] 2L_7003935_SNP [dm6]	G	T	6.603e^-4	1	INTRON uif	TF binding site BDTNP1_TFBS_dl
2R	20110617	2R_20110617_SNP [dm3] 2R_24223094_SNP [dm6]	G	A	6.613e^-4	1	INTRON CG30419
3L	20640329	3L_20640329_SNP [dm3] 3L_20647229_SNP [dm6]	A	T	6.652e^-4	1	INTERGENIC
3R	24500300	3R_24500300_SNP [dm3] 3R_28674578_SNP [dm6]	C	G	6.655e^-4	1	UPSTREAM CG9990 INTERGENIC
X	10963244	X_10963244_DEL [dm3] X_11069211_DEL [dm6]	ATTGATAGCCAAAAGCTCAC...	A	6.677e^-4	1	DOWNSTREAM CG15203 INTERGENIC
2L	22003737	2L_22003737_SNP [dm3] 2L_22003737_SNP [dm6]	G	A	6.688e^-4	1	INTERGENIC
3L	6113230	3L_6113230_SNP [dm3] 3L_6120130_SNP [dm6]	A	C	6.703e^-4	1	INTRON Ets65A	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	1036301	2R_1036301_SNP [dm3] 2R_5148796_SNP [dm6]	A	G	6.711e^-4	1	SYNONYMOUS_CODING Atf6
2R	7093134	2R_7093134_SNP [dm3] 2R_11205629_SNP [dm6]	A	G	6.712e^-4	1	INTRON shn	TF binding site mE1_TFBS_HSA
3R	16422150	3R_16422150_SNP [dm3] 3R_20596428_SNP [dm6]	A	T	6.713e^-4	1	INTRON bon	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	18864104	3R_18864104_SNP [dm3] 3R_23038382_SNP [dm6]	G	T	6.740e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17629605	2L_17629605_SNP [dm3] 2L_17629605_SNP [dm6]	T	C	6.742e^-4	1	INTERGENIC
3L	11186533	3L_11186533_SNP [dm3] 3L_11193433_SNP [dm6]	T	G	6.749e^-4	1	INTRON GlcAT-P
2R	16686160	2R_16686160_SNP [dm3] 2R_20798655_SNP [dm6]	G	T	6.757e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	22099223	3R_22099223_SNP [dm3] 3R_26273501_SNP [dm6]	C	A	6.770e^-4	1	INTRON CG6154
3L	18897361	3L_18897361_SNP [dm3] 3L_18904261_SNP [dm6]	A	G	6.776e^-4	1	SYNONYMOUS_CODING CSN1b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	20954895	3R_20954895_SNP [dm3] 3R_25129173_SNP [dm6]	C	T	6.784e^-4	1	SYNONYMOUS_CODING Clbn
3R	15059733	3R_15059733_SNP [dm3] 3R_19234011_SNP [dm6]	A	G	6.785e^-4	1	SYNONYMOUS_CODING unc79
3R	26073119	3R_26073119_SNP [dm3] 3R_30247397_SNP [dm6]	T	C	6.785e^-4	1	UPSTREAM CG9733 DOWNSTREAM tRNA:CR31383 INTERGENIC
X	13259685	X_13259685_SNP [dm3] X_13365652_SNP [dm6]	C	T	6.786e^-4	1	SYNONYMOUS_CODING Syt12	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10743834	3R_10743834_SNP [dm3] 3R_14918112_SNP [dm6]	G	C	6.793e^-4	1	UPSTREAM Sdr INTERGENIC	TF binding site mE1_TFBS_inv
3L	5949315	3L_5949315_SNP [dm3] 3L_5956215_SNP [dm6]	C	A	6.804e^-4	1	INTERGENIC
3L	23811555	3L_23811555_SNP [dm3] 3L_23818455_SNP [dm6]	A	T	6.808e^-4	1	INTERGENIC	transposable element FlyBase
3R	22098389	3R_22098389_SNP [dm3] 3R_26272667_SNP [dm6]	C	T	6.812e^-4	1	INTRON CG6154
2R	8619366	2R_8619366_INS [dm3] 2R_12731861_INS [dm6]	T	TT	6.813e^-4	1	INTRON CG42663	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	21317052	X_21317052_SNP [dm3] X_21446025_SNP [dm6]	G	A	6.837e^-4	1	INTRON CG42343
2R	17958244	2R_17958244_SNP [dm3] 2R_22070739_SNP [dm6]	A	T	6.845e^-4	1	NON_SYNONYMOUS_CODING CG11475 DOWNSTREAM Snp & 1 other
2R	11655950	2R_11655950_SNP [dm3] 2R_15768445_SNP [dm6]	C	T	6.849e^-4	1	NON_SYNONYMOUS_CODING Zasp52 INTRON Zasp52	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	7889916	X_7889916_MNP [dm3] X_7995883_MNP [dm6]	AGGT	TAAG	6.854e^-4	1	INTRON Tbh	TF binding site BDTNP1_TFBS_twi
2L	5981329	2L_5981329_SNP [dm3] 2L_5981329_SNP [dm6]	C	A	6.859e^-4	1	UPSTREAM chic & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_Stat92E mE1_TFBS_Trl mE1_TFBS_Ubx
3L	1447527	3L_1447527_SNP [dm3] 3L_1447527_SNP [dm6]	C	A	6.861e^-4	1	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3918803	2L_3918803_SNP [dm3] 2L_3918803_SNP [dm6]	G	T	6.868e^-4	1	SYNONYMOUS_CODING fred	TF binding site mE1_TFBS_sens
3L	10840040	3L_10840040_SNP [dm3] 3L_10846940_SNP [dm6]	G	A	6.869e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	16869550	3R_16869550_SNP [dm3] 3R_21043828_SNP [dm6]	G	T	6.874e^-4	1	UPSTREAM CG12278 INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	21104158	3R_21104158_SNP [dm3] 3R_25278436_SNP [dm6]	T	G	6.889e^-4	1	UTR_3_PRIME CG10514
2R	14866062	2R_14866062_SNP [dm3] 2R_18978557_SNP [dm6]	C	G	6.895e^-4	1	NON_SYNONYMOUS_CODING CG18605	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	8010649	2L_8010649_SNP [dm3] 2L_8010649_SNP [dm6]	T	G	6.898e^-4	1	UTR_5_PRIME CG34010 UPSTREAM Tg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
2R	14855563	2R_14855563_SNP [dm3] 2R_18968058_SNP [dm6]	G	T	6.909e^-4	1	INTERGENIC
2L	17567601	2L_17567601_SNP [dm3] 2L_17567601_SNP [dm6]	C	A	6.919e^-4	1	INTERGENIC
2R	7126217	2R_7126217_SNP [dm3] 2R_11238712_SNP [dm6]	C	T	6.938e^-4	1	SYNONYMOUS_CODING CG13216 DOWNSTREAM CG13215	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_sens
2L	15729748	2L_15729748_SNP [dm3] 2L_15729748_SNP [dm6]	C	T	6.938e^-4	1	SYNONYMOUS_CODING CycE	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12257302	2R_12257302_SNP [dm3] 2R_16369797_SNP [dm6]	G	C	6.940e^-4	1	INTERGENIC
4	125508	4_125508_SNP [dm3] 4_104882_SNP [dm6]	A	C	6.944e^-4	1	INTRON pan
3R	13855001	3R_13855001_SNP [dm3] 3R_18029279_SNP [dm6]	C	A	6.958e^-4	1	INTERGENIC
2L	14653329	2L_14653329_DEL [dm3] 2L_14653329_DEL [dm6]	AGCA	A	6.966e^-4	1	INTRON osp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18857051	3L_18857051_INS [dm3] 3L_18863951_INS [dm6]	A	AA	6.967e^-4	1	UPSTREAM CG6865 INTRON CG6865
X	22241482	X_22241482_SNP [dm3] X_22839646_SNP [dm6]	A	T	6.970e^-4	1	INTRON fog & 1 other
2L	17361811	2L_17361811_SNP [dm3] 2L_17361811_SNP [dm6]	C	A	6.971e^-4	1	DOWNSTREAM CR44346 INTERGENIC	transposable element FlyBase
2R	10792729	2R_10792729_SNP [dm3] 2R_14905224_SNP [dm6]	T	C	6.976e^-4	1	SYNONYMOUS_CODING CG10249	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25786894	3R_25786894_SNP [dm3] 3R_29961172_SNP [dm6]	A	T	6.978e^-4	1	INTRON TkR99D
2L	4629307	2L_4629307_SNP [dm3] 2L_4629307_SNP [dm6]	T	C	6.984e^-4	1	INTERGENIC
2L	11221089	2L_11221089_SNP [dm3] 2L_11221089_SNP [dm6]	C	T	6.985e^-4	1	INTRON ab	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1666844	3L_1666844_SNP [dm3] 3L_1666844_SNP [dm6]	A	G	6.991e^-4	1	UPSTREAM snoRNA:Me28S-A2634c & 1 other DOWNSTREAM snoRNA:Me28S-A2634a & 2 others INTRON Uhg7	TF binding site BDTNP1_TFBS_z mE1_TFBS_zfh1
2L	13085668	2L_13085668_SNP [dm3] 2L_13085668_SNP [dm6]	T	A	6.994e^-4	1	INTERGENIC
3L	16442956	3L_16442956_SNP [dm3] 3L_16449856_SNP [dm6]	G	C	6.995e^-4	1	INTRON CG33158 & 1 other
X	8008325	X_8008325_SNP [dm3] X_8114292_SNP [dm6]	T	A	6.998e^-4	1	INTRON Gclc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc
3R	14009883	3R_14009883_SNP [dm3] 3R_18184161_SNP [dm6]	C	G	7.002e^-4	1	SYNONYMOUS_CODING CG7208 UPSTREAM cdm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	4824866	2L_4824866_SNP [dm3] 2L_4824866_SNP [dm6]	C	T	7.003e^-4	1	INTRON CG15628	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9253657	3L_9253657_SNP [dm3] 3L_9260557_SNP [dm6]	G	A	7.006e^-4	1	INTRON GluRIB
2R	11188957	2R_11188957_SNP [dm3] 2R_15301452_SNP [dm6]	C	A	7.007e^-4	1	INTRON Trpm	TF binding site mE1_TFBS_inv
2R	19688424	2R_19688424_SNP [dm3] 2R_23800901_SNP [dm6]	A	G	7.008e^-4	1	UPSTREAM CG30177 INTERGENIC
3L	1588357	3L_1588357_SNP [dm3] 3L_1588357_SNP [dm6]	C	A	7.015e^-4	1	INTRON CG13917
2L	4855752	2L_4855752_INS [dm3] 2L_4855752_INS [dm6]	G	GCAG	7.031e^-4	1	INTRON pog
3L	9354431	3L_9354431_SNP [dm3] 3L_9361331_SNP [dm6]	G	T	7.032e^-4	1	NON_SYNONYMOUS_CODING CG34455 UPSTREAM CG34456	TF binding site mE1_TFBS_HSA
3L	11470336	3L_11470336_SNP [dm3] 3L_11477236_SNP [dm6]	C	T	7.040e^-4	1	INTERGENIC

By genomic position
Variant impact
Gene name

se_StarvationRes phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results